BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase
[Candidatus Liberibacter asiaticus str. psy62]
         (300 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done



>gi|239832306|ref|ZP_04680635.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
 gi|239824573|gb|EEQ96141.1| D-alanine--D-alanine ligase [Ochrobactrum intermedium LMG 3301]
          Length = 320

 Score =  239 bits (608), Expect = 5e-61,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 230/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA+ LE+ G++V++IDVDR+V  VLA LKPD+ FN LHG
Sbjct: 18  VAVLMGGFSSERPVSLSSGASCAATLEECGYRVTRIDVDRNVATVLAELKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS+L+NRF + +
Sbjct: 78  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVAPSLLLNRFEIGT 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 138 EHPMKPPYVVKPVREGSSFGVVIVKDDQAHPPQIISSAEWNYGAEVLVEKYIPGRELTCS 197

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 198 VMDDRAMDVCEIIPVGHQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTMALTAHRAIGC 257

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMT  S+ P++A  AG SF ELL WMVEDAS
Sbjct: 258 RGVSRSDFRFDDRFSEDGEVIWLEINTQPGMTSTSLVPDIARAAGISFGELLSWMVEDAS 317

Query: 298 CLR 300
           CLR
Sbjct: 318 CLR 320


>gi|254781179|ref|YP_003065592.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
 gi|254040856|gb|ACT57652.1| D-alanine--D-alanine ligase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 300

 Score =  238 bits (607), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 299/299 (100%), Positives = 299/299 (100%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN
Sbjct: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ
Sbjct: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV
Sbjct: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR
Sbjct: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR
Sbjct: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300


>gi|209550169|ref|YP_002282086.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535925|gb|ACI55860.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 308

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 177/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++QRLA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQRLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFTEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|241205551|ref|YP_002976647.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240859441|gb|ACS57108.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 308

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  S +VNRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAGAAGIPVAESQVVNRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|116253042|ref|YP_768880.1| D-alanine--D-alanine ligase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257690|emb|CAK08788.1| putative D-alanine--D-alanine ligase B [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 308

 Score =  234 bits (596), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 225/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GF V++IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFDVTRIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+ V  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGITVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++++E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVIVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q L+  AHQAIGC
Sbjct: 186 VMGETPLGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLSLRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|13471546|ref|NP_103112.1| D-alanine--D-alanine ligase [Mesorhizobium loti MAFF303099]
 gi|39931185|sp|Q98KB6|DDLB_RHILO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|14022288|dbj|BAB48898.1| D-alanyl-D-alanine ligase [Mesorhizobium loti MAFF303099]
          Length = 308

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 173/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE+ G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALENEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K++V + GVPV  S + NRF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKKIVKTVGVPVAESKVANRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYVIKP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVIKPVNEGSSFGVVIVSEGQSHPPQVVGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQA+GC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAVGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|153009077|ref|YP_001370292.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
 gi|166198496|sp|A6WZQ9|DDL_OCHA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151560965|gb|ABS14463.1| D-alanine--D-alanine ligase [Ochrobactrum anthropi ATCC 49188]
          Length = 308

 Score =  233 bits (595), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA+ LE+ G+ V++IDVDR+V  VLA LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGTACAATLEERGYCVTRIDVDRNVASVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V  S+L+NRF + +
Sbjct: 66  PFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVAVASSLLLNRFEIGT 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQ+ P  ++ S+ WN+G ++L+E+Y+ G ELTC 
Sbjct: 126 EHPMEPPYVVKPVREGSSFGVVIVKEDQTHPPQIISSAEWNYGAEVLVEKYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  +DV EI      FY Y+ KY +  S+HV PAKI  +IY+++Q +A  AH+AIGC
Sbjct: 186 VMGDRVMDVCEIIPVGHQFYDYDSKYVAGASSHVCPAKILPNIYQKIQTMALTAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF ELL WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRFSDDGEVIWLEINTQPGMTPTSLVPDIAKAAGISFGELLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|319782851|ref|YP_004142327.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317168739|gb|ADV12277.1| D-alanine/D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 308

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G+ V  S + +RF + +
Sbjct: 66  PFGEDGTIQGILEYLGIPYTHSGVLASALAMNKEQAKRVAKSVGIVVAESKVASRFAIQN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  +L SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVNEGSSFGVVIVHEGQSHPPQVLGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + ++ WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEIVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|218462241|ref|ZP_03502332.1| D-alanine--D-alanine ligase [Rhizobium etli Kim 5]
          Length = 308

 Score =  233 bits (594), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+++L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|118590889|ref|ZP_01548289.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
 gi|118436411|gb|EAV43052.1| D-alanylalanine synthetase [Stappia aggregata IAM 12614]
          Length = 308

 Score =  233 bits (593), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 158/303 (52%), Positives = 220/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSL+SGK CA ALE+AG++V+++DVDR++  VL  LKPD+ FN LHG
Sbjct: 6   VAVLMGGWVNERPVSLASGKGCADALEEAGYRVTRVDVDRNISAVLKDLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE+L IPYTHSG+LAS+L+M+K+++K V+++ G+PV   ++VNR  +  
Sbjct: 66  PFGEDGCVQGILEVLNIPYTHSGVLASSLAMNKVKAKAVMNAAGIPVTEHLVVNRREITR 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D+L+ E+++ G ELTC 
Sbjct: 126 EHPMKPPYVLKPINEGSSFGVLIVKEDQEFPPQELGREDWPYPDELMCEKFIGGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L V +I      FY Y+ KY+   S H+LPAKI   +Y+ ++ LA  AHQA+GC
Sbjct: 186 VMDDTALGVIDIVPLGHGFYDYDAKYAQGGSKHILPAKISPIVYQTIETLAVKAHQALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S ++  LE+N QPGMTP S+ PEMAA+ G SF++L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEREDGSGELICLEVNTQPGMTPTSLVPEMAAHKGMSFKDLVSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|218674672|ref|ZP_03524341.1| D-alanine--D-alanine ligase [Rhizobium etli GR56]
          Length = 308

 Score =  232 bits (592), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 176/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GF+V+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFQVTCIDVARDVSERLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W +G+++L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQIVSSPEWRYGEEVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLAVRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|327194618|gb|EGE61468.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 337

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 35  VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 94

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 95  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 154

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 155 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPDWHYGEDVLVERYVYGRELTCG 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 215 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 274

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 275 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 334

Query: 298 CLR 300
           CLR
Sbjct: 335 CLR 337


>gi|218663185|ref|ZP_03519115.1| D-alanine--D-alanine ligase [Rhizobium etli IE4771]
          Length = 308

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S +VNRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVVNRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 AHPMRPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VTE+     +FY Y+ KY+   S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGETALGVTEVVPLGHNFYDYDSKYAVGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|227822648|ref|YP_002826620.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
 gi|254767735|sp|C3MEM6|DDL_RHISN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227341649|gb|ACP25867.1| D-alanine--D-alanine ligase [Sinorhizobium fredii NGR234]
          Length = 306

 Score =  232 bits (592), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 173/301 (57%), Positives = 224/301 (74%), Gaps = 1/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG ACA ALE  G++VS++DV R V  VLA L+PD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGAACADALEAEGYRVSRVDVGRDVAAVLADLRPDIVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R    +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVADALIMDRREFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 AHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSAHVIPAQISPNIYQKIQSLAVKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+SRSDF FD     ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDASCL
Sbjct: 246 RGVSRSDFRFDDRGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDASCL 305

Query: 300 R 300
           R
Sbjct: 306 R 306


>gi|190892579|ref|YP_001979121.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697858|gb|ACE91943.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 308

 Score =  232 bits (591), Expect = 5e-59,   Method: Composition-based stats.
 Identities = 178/303 (58%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V ++ G+PV  S ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDKAKLVAAAAGIPVAESQVINRFAFPS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVAEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPQGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF E L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|260462093|ref|ZP_05810337.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259031953|gb|EEW33220.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 308

 Score =  231 bits (589), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA  LE  G++V+++DV R VG VLA LKPD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADELEKEGYQVTRVDVGRDVGSVLAELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+M+K ++K+V  S G PV  S + +RF +  
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMNKEQAKRVAKSVGTPVAESKVTSRFAIQD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++ + QS P  ++ SS W +GD +++E+Y+ G ELTC 
Sbjct: 126 KHPMKPPYVVKPVSEGSSFGVVIVSEGQSHPPQVIGSSEWKYGDTVMVERYIHGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      FY Y+ KY +  S H  PAK+  +IY+++Q LA  AHQ IGC
Sbjct: 186 VMGDVALGVCEIIPTGHSFYDYDSKYVAGGSKHECPAKVSPNIYQKIQTLALKAHQVIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLE+N QPGMTP S+ PE+AA+AG+SF +LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRHSENGEVVWLEVNTQPGMTPTSLVPEIAAHAGHSFGDLLSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|220927177|ref|YP_002502479.1| D-alanine--D-alanine ligase [Methylobacterium nodulans ORS 2060]
 gi|219951784|gb|ACL62176.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 307

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 163/303 (53%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  GF+++ IDV R++  VLA ++PD+AFN LHG
Sbjct: 5   VAVLMGGWSSEREVSLNSGRACARALEAQGFRITPIDVQRNLAAVLAEVQPDIAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LEL+ IPYTHSG+LASAL+M K R+K V+ S GVPV    +VNRF   S
Sbjct: 65  PCGEDGTVQGLLELMAIPYTHSGVLASALAMHKDRAKVVMRSAGVPVPEGRIVNRFEAAS 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS+G++++++ +S P   L    W++GD++L E Y+ G ELTC 
Sbjct: 125 RHVLPPPYVLKPVAEGSSVGVVIVREGRSHPPQELAREDWSYGDEVLAETYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I     ++Y Y+ KY+   S HVLPA+I   IY+ V+ LA  AHQA+GC
Sbjct: 185 VMGDTALGVIDIRPATGEWYDYDAKYAKGGSVHVLPAEIKPKIYQRVRELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AGYSF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTETSLVPELAAHAGYSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|307319701|ref|ZP_07599126.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306894632|gb|EFN25393.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 308

 Score =  230 bits (587), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+L+SAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLSSALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|15965924|ref|NP_386277.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti 1021]
 gi|307308234|ref|ZP_07587943.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
 gi|39930910|sp|Q92NM4|DDL_RHIME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15075193|emb|CAC46750.1| Probable D-alanine--D-alanine ligase B [Sinorhizobium meliloti
           1021]
 gi|306901232|gb|EFN31838.1| D-alanine/D-alanine ligase [Sinorhizobium meliloti BL225C]
          Length = 308

 Score =  230 bits (587), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 224/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV R V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEAEGYRVTRVDVGRDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKDQAKHVAKAAGIPVAEALVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+Y+ G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSEWRYGDRVMVERYIAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA+I  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQISPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLQFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|159185044|ref|NP_355054.2| D-alanine--D-alanine ligase [Agrobacterium tumefaciens str. C58]
 gi|22095557|sp|Q8UDN3|DDL_AGRT5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159140318|gb|AAK87839.2| D-alanylalanine synthetase [Agrobacterium tumefaciens str. C58]
          Length = 308

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 227/303 (74%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R V  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDVAAVLDELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVAGERVMNRFDFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP++ GSS G++++K+DQS P  +L SS W  G+Q+++E+Y+ G ELTCG
Sbjct: 126 EHPLQPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWPFGNQVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA I   IY+++Q LA +AHQAIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAGISPKIYQKIQTLAVMAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF +L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGDLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|312114841|ref|YP_004012437.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
 gi|311219970|gb|ADP71338.1| D-alanine/D-alanine ligase [Rhodomicrobium vannielii ATCC 17100]
          Length = 309

 Score =  230 bits (586), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 158/304 (51%), Positives = 215/304 (70%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+ACA ALE  G++V++IDV R +   LA LKPD AFN LHG
Sbjct: 7   IAVLMGGWSSEREVSLNSGEACAGALEAQGYRVTRIDVGRDIADRLAALKPDAAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK R+K  + + GVPV   ++ +      
Sbjct: 67  KWGEDGCVQGILETLQIPYTHSGVLASALAMDKARAKVAMKAAGVPVAAGVVASPAKAAQ 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +HL+ PPYV+KP+  GSS+G+ +++ D   P   L  + W HGD +L+E+YV G ELTC 
Sbjct: 127 RHLLPPPYVVKPVCEGSSVGVFIVRNDYEHPPQELTRADWTHGD-VLVERYVAGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD +L + EI   +   FY YE KY+   S H+LPA++  +IY+ +Q++A  AH A+G
Sbjct: 186 VLGDRALGIIEIKPAEGLIFYDYEAKYAKGGSYHILPARLSPEIYENIQKMAVDAHHALG 245

Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF  D     + ++  LE+N QPGMT  S+ PE+AA+AG SF EL+ W+VE+A
Sbjct: 246 CRGVSRADFRLDDRPEGTGELVCLEVNTQPGMTATSLVPELAAHAGLSFGELVRWIVENA 305

Query: 297 SCLR 300
           SC R
Sbjct: 306 SCNR 309


>gi|182677688|ref|YP_001831834.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
 gi|229463732|sp|B2IGG3|DDL_BEII9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182633571|gb|ACB94345.1| D-alanine--D-alanine ligase [Beijerinckia indica subsp. indica ATCC
           9039]
          Length = 307

 Score =  230 bits (585), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA AL   GF+V+++DVDR +G  LA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREVSLCSGAACAEALRGEGFEVTEVDVDRQIGERLAALRPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG++Q +LE+L IPYTHSG+LASAL+M K R++ V+++ GVP+   + V+R     
Sbjct: 65  RFGEDGIIQGVLEMLAIPYTHSGVLASALAMRKDRARDVLAAAGVPIAKGVTVDRLEAAQ 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKPL  GSS G+ ++++DQ+ P   L  S W  G+++L+E Y+ G ELTC 
Sbjct: 125 RHILPPPYVIKPLGEGSSFGVFIVREDQAYPPQELTRSDWAFGNRVLVESYIGGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+ + DV EI      +Y Y+ KY    S H+LPA++  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VIGEKAHDVIEIKAVGGGWYDYDAKYRKGGSIHILPAELKRNIYQNVQLLSLKAHKALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMV+DAS
Sbjct: 245 RGVSRTDFRYDDRPEGTGELIVLEVNTQPGMTETSLLPEIAAYAGLSFGELVRWMVDDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|86358446|ref|YP_470338.1| D-alanine--D-alanine ligase [Rhizobium etli CFN 42]
 gi|86282548|gb|ABC91611.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 308

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 175/303 (57%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K+V ++ G+PV  S ++NRF   +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKGKAKRVAAAAGIPVAESQVINRFAFPA 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP++ GSS G++++ +DQ+ P  ++ S  W++G+ +L+E+YV G ELTCG
Sbjct: 126 THPMKPPYVVKPVREGSSFGVVIVTEDQAHPPQVVSSPEWHYGEDVLVERYVYGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTE+     +FY Y+ KY++  S HV+PAKI  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEVVPLGHNFYDYDSKYAAGGSKHVIPAKISPNIYQKIQTLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       ++ WLE+N QPGMTP S+ PEMA +AGYSF + L WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLSDDGEIIWLEVNTQPGMTPTSLVPEMAGHAGYSFGQFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|325293460|ref|YP_004279324.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
 gi|325061313|gb|ADY65004.1| D-alanine-D-alanine ligase [Agrobacterium sp. H13-3]
          Length = 308

 Score =  229 bits (584), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 228/303 (75%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G+KV+++DV R +  VL  L+PD+AFN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGNACALALEGEGYKVTRVDVGRDIAAVLGELRPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LASAL+MDK ++K+V ++ G+PV    ++NRF   S
Sbjct: 66  PFGEDGTIQGILEYLAIPYTHSGVLASALAMDKAQAKKVAAAAGIPVADERVMNRFEFTS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E+Y+ G ELTCG
Sbjct: 126 EHPLAPPYVVKPVREGSSFGVVIVKEDQSHPPQILTSSEWRYGDHVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VTE+     +FY Y+ KY++  S HV+PA+I   IY+++Q LA +AH+AIGC
Sbjct: 186 VLDGEALGVTEVVPLGHNFYDYDAKYAAGGSKHVIPAEISPKIYQKIQTLAVMAHRAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMTP S+ PEMAA+AG SF  L+ WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRFSEDGEVIWLEVNTQPGMTPTSLVPEMAAHAGRSFGNLVSWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|217979596|ref|YP_002363743.1| D-alanine--D-alanine ligase [Methylocella silvestris BL2]
 gi|254767734|sp|B8ETM9|DDL_METSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217504972|gb|ACK52381.1| D-alanine/D-alanine ligase [Methylocella silvestris BL2]
          Length = 307

 Score =  229 bits (583), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG ACA ALE  GF+V+ +DVDR +   LA L+PD A N LHG
Sbjct: 5   VAVLMGGLSAEREVSLRSGAACAKALEAEGFRVTTLDVDRDIAQKLAALRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG++Q +LE+L IPYTHSG+LASAL+M K R+K V+ + GVPV   + + RF    
Sbjct: 65  RYGEDGVIQGVLEMLAIPYTHSGVLASALAMQKDRAKDVLRAAGVPVAEGVTIGRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KPL  GSS G+I+++ DQ+ P   L    W +GD +L+E++V G ELTC 
Sbjct: 125 AHVMTPPYVVKPLGEGSSFGVIIVRADQTHPPQELTRDDWAYGDLVLVERFVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +  VTEI      +Y Y+ KY +  S H+LPA +   +Y+ VQ LA +AH+A+GC
Sbjct: 185 VIGDKAYGVTEIRAADGGWYDYDAKYKAGGSIHILPANLKEFVYQNVQELALVAHRALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PE+AAYAG SF EL+ WMVEDAS
Sbjct: 245 RGVSRTDFRYDDTPQGTGELVVLEVNSQPGMTETSLVPEIAAYAGISFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|150397278|ref|YP_001327745.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
 gi|166198504|sp|A6UB80|DDL_SINMW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150028793|gb|ABR60910.1| D-alanine--D-alanine ligase [Sinorhizobium medicae WSM419]
          Length = 308

 Score =  228 bits (582), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 223/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSG ACA ALE  G++V+++DV   V  VL  L+PD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGTACADALEGEGYRVTRVDVGHDVAAVLQELRPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK ++K V  + G+PV  +++++R +  +
Sbjct: 66  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDKAQAKHVAKAAGIPVAEAVVMDRRSFGN 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH + PPYV+KP++ GSS G++++K+DQS P  ++ SS W +GD++++E+YV G E TCG
Sbjct: 126 QHPMKPPYVVKPVREGSSFGVVIVKEDQSHPPQVITSSDWRYGDRIMVERYVAGREFTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY    S HV+PA++  +IY+++Q LA  AHQAIGC
Sbjct: 186 VMGDVALGVTEIIPQGHAFYDYDSKYVKGGSKHVIPAQVSPNIYQKIQTLALKAHQAIGC 245

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMA +AG  F E L WMVEDAS
Sbjct: 246 RGVSRSDFRFDDRGDGEGELIWLEINTQPGMTPTSLVPEMAQHAGLRFGEFLRWMVEDAS 305

Query: 298 CLR 300
           CLR
Sbjct: 306 CLR 308


>gi|222086439|ref|YP_002544973.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723887|gb|ACM27043.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 308

 Score =  228 bits (581), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 171/303 (56%), Positives = 231/303 (76%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER VSLSSGKACA ALE  G++V+++DV+R V   LA LKPD+ FN LHG
Sbjct: 6   VAVLLGGFSSERPVSLSSGKACADALEAEGYRVTRVDVERDVSARLADLKPDVVFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K V +S G+PV  S+++NRF +  
Sbjct: 66  PFGEDGTIQGVLEYLQIPYTHSGVMASALAMDKARAKTVAASAGIPVAASLVLNRFDIAG 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H +  PYV+KP++ GSS G++++K++Q+ P  ++ SS W +GD++++E+Y+ G ELTCG
Sbjct: 126 EHPMPAPYVVKPVREGSSFGVVIVKEEQAHPPQIIASSEWRYGDEVMVERYIHGRELTCG 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      FY Y+ KY++  S HV+PA+I  ++Y+++Q LA  AHQAIGC
Sbjct: 186 VMGDTALGVTEIVPQGHSFYDYDSKYAAGGSKHVIPAEISPNLYQKIQLLALRAHQAIGC 245

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FD       ++ WLEIN QPGMTP S+ PEMAA+AGYSF E L WMVED+S
Sbjct: 246 RGVSRSDFRFDDRFSEEGELIWLEINTQPGMTPTSLLPEMAAHAGYSFGEFLRWMVEDSS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CSR 308


>gi|296448759|ref|ZP_06890613.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
 gi|296253733|gb|EFH00906.1| D-alanine/D-alanine ligase [Methylosinus trichosporium OB3b]
          Length = 311

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 215/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER +SL SG ACA ALE  GF+V+++DV R V  VLA LKPD+AFN LHG
Sbjct: 9   VAVLMGGLSSERPISLRSGAACAEALEGEGFRVTRVDVGRDVAEVLAALKPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE L IPYTHSG+LAS+L+M K  +K V+++ GVPV    +++R     
Sbjct: 69  RFGEDGCIQGILETLHIPYTHSGVLASSLAMRKDVAKSVMAAAGVPVPKGRVLSRQEAAK 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+ ++K+ +S P   L ++ W HGD +L E +VDG ELTC 
Sbjct: 129 AHALPPPYVLKPVSEGSSFGVFIVKEGRSHPPQELAAADWKHGDLMLAENFVDGRELTCA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI     +FY ++ KY+   S HVLPA +  +IY+EVQ+LA  AH+A+GC
Sbjct: 189 VMGDRALGVIEILPVSEEFYGFDAKYAKGGSKHVLPANLKQNIYQEVQQLALEAHRALGC 248

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PEMAA+AGYSF  L+ WMVEDAS
Sbjct: 249 RGVSRADFRYDDSPGGTGDLVVLEVNTQPGMTETSLVPEMAAHAGYSFGGLVRWMVEDAS 308

Query: 298 CLR 300
           C R
Sbjct: 309 CDR 311


>gi|304392253|ref|ZP_07374195.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
 gi|303296482|gb|EFL90840.1| D-alanine--D-alanine ligase [Ahrensia sp. R2A130]
          Length = 316

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 222/303 (73%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLS+G +CA ALE  G++V+++DVDR+V   LA LKPD+AFN LHG
Sbjct: 14  VAVLMGGWSSERPVSLSTGNSCADALEAEGYRVTRVDVDRNVSATLADLKPDVAFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K V    G+PV  + +++R     
Sbjct: 74  PHGEDGTIQGILEYLDIPYTHSGVMASALAMDKERAKTVARRAGIPVAEAKVMHRLEAAE 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +D+S P   L S  W +GD +++E+++ G ELTC 
Sbjct: 134 KHVMKPPYVVKPVNEGSSFGVLIVCEDRSTPPQELYSDEWPYGDTVMVERFIHGRELTCA 193

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI      +Y Y+ KY+   STHVLPA+I  +IY+++Q L+  AH+AIGC
Sbjct: 194 VMGDVALGVTEITAADGGWYDYDAKYAEGGSTHVLPAEILPNIYQKIQTLSLKAHEAIGC 253

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF  D     + ++ WLE+N QPGMTP S+ PE+A +AG++F +LL WMVEDAS
Sbjct: 254 RGVSRSDFRLDDRVNGTGELIWLEVNTQPGMTPTSLLPELAQHAGHTFGDLLSWMVEDAS 313

Query: 298 CLR 300
           C R
Sbjct: 314 CQR 316


>gi|90418191|ref|ZP_01226103.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
 gi|90337863|gb|EAS51514.1| D-alanine--D-alanine ligase [Aurantimonas manganoxydans SI85-9A1]
          Length = 321

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 216/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL+SGKACA+ALE AG+ V+ +DVDR+V   LA L+PD+AFN LHG
Sbjct: 19  VAVLMGGFSSERPVSLASGKACAAALETAGYTVTTVDVDRNVAETLARLRPDVAFNALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPYTHSG+LASAL+M K R+K V  + GVPV  + L +R     
Sbjct: 79  PFGEDGTIQGILEYLEIPYTHSGVLASALAMHKERAKIVAKAAGVPVAEAKLRHRLDAAE 138

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS G++++++DQ  P   L    W +GD ++IE++V G ELTC 
Sbjct: 139 SHVLPPPYVIKPVAEGSSFGVLIVREDQPHPPQQLYGDDWPYGDIVMIERFVAGRELTCA 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L+V EI      FY Y+ KY    S+H++PA +P D+ +++Q  +  AH A+GC
Sbjct: 199 VMGDVALEVCEIVTEGHAFYDYDSKYVPGGSSHIVPADLPKDVARKIQGWSLAAHAALGC 258

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D       +V WLE+N QPGMT  S+ P++AA +G+SF ELL WMVEDAS
Sbjct: 259 RGVSRSDFRYDDRFGPGGEVVWLEVNTQPGMTETSLVPDIAAASGHSFPELLSWMVEDAS 318

Query: 298 CLR 300
           C R
Sbjct: 319 CRR 321


>gi|163794530|ref|ZP_02188501.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
 gi|159180254|gb|EDP64777.1| D-alanylalanine synthetase [alpha proteobacterium BAL199]
          Length = 306

 Score =  227 bits (579), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+ CA AL  AG+KVS+IDVDR +   L  +KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAERAVSLSSGRECAKALRQAGWKVSEIDVDRGIARKLESVKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L +L IPYTHSG+ ASA++MDK  +K V +  G+      +V     D 
Sbjct: 68  PVGEDGNIQGVLNILGIPYTHSGVRASAVAMDKPTAKDVFARHGLRCPEGRVVTLSDFDK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              ++PPYVIKP+  GSS+G+ +++           +  W  GD +L+E+YV G ELT  
Sbjct: 128 GEPMTPPYVIKPIDQGSSVGVHIVR---EGDNYRPTAEDWPFGDAVLVERYVPGRELTVA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V    +            FY Y+ KY+   S H+LPA +P +I ++   +A  AH+AIGC
Sbjct: 185 VWDGEA-MEVTEITSSHGFYDYDAKYAEGGSIHMLPAPVPDEIRRQAMDIAARAHRAIGC 243

Query: 241 RGISRSDFLFDPLSRKV---FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D  + +    + LEIN QPGMTP S+ PE AA+ G SF EL+  MVEDA 
Sbjct: 244 RGVSRADFRYDDTAGEPGDLYLLEINTQPGMTPTSLVPEQAAHLGISFPELVSRMVEDAR 303

Query: 298 CL 299
           C 
Sbjct: 304 CD 305


>gi|323137889|ref|ZP_08072964.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
 gi|322396892|gb|EFX99418.1| D-alanine/D-alanine ligase [Methylocystis sp. ATCC 49242]
          Length = 307

 Score =  227 bits (577), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+ERE+SL SG+ACA ALE+  ++VS++DV      VLA L+PD+AFN LHG
Sbjct: 5   VAVLMGGLSAEREISLRSGEACAKALEEQAYRVSRVDVGHDAASVLAALEPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELL IPYTHSG+LAS+++M K  +K V+++ GVPV    +V+R     
Sbjct: 65  KFGEDGCIQGVLELLRIPYTHSGVLASSVAMKKDVAKVVMAAAGVPVPKGRVVHRLEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS G+ +I    + P   L  + W HGD +L EQ++ G ELTC 
Sbjct: 125 AHVLPVPYVLKPISEGSSFGVFIITDGDAPPPRELARADWAHGDLMLAEQFIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      +Y Y  KY+   S HVLPA +  +IY+EVQ LA  AH+A+GC
Sbjct: 185 VMGDRALDVIEILAADGGWYDYHAKYAKGGSKHVLPANLKQNIYQEVQHLAIEAHRALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     + ++  LE+N QPGMT  S+ PEMAAYAG+SF EL+ WMVEDAS
Sbjct: 245 RGVSRADFRYDDRPGGTGELVVLEVNTQPGMTETSLVPEMAAYAGFSFGELVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CDR 307


>gi|154252866|ref|YP_001413690.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
 gi|190359199|sp|A7HVV0|DDL_PARL1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154156816|gb|ABS64033.1| D-alanine--D-alanine ligase [Parvibaculum lavamentivorans DS-1]
          Length = 308

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 152/303 (50%), Positives = 208/303 (68%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGK CA AL   G++V++ID  R +   +  +KPD+AFN LHG
Sbjct: 7   VAVLKGGWSAEREVSLVSGKGCAEALRKHGYRVTEIDAGRDLADQILKVKPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+L +PYTHSG+LASAL+M K R+K V  + G+PV  S++V R     
Sbjct: 67  RWGEDGCVQGLLEILRVPYTHSGVLASALAMHKERAKFVFRAAGLPVAESVVVPREQAAH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +++   + P   L S+ WN GD+++ E+Y+ G ELTC 
Sbjct: 127 GHVMDPPYVIKPVSEGSSVGVFIVRAGDNRPPAELTSAEWNLGDEVMAERYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  +      +  + FY YE KY +  S H++PA I  DIY EVQR+   AH+A+GC
Sbjct: 187 VMGE-EIFGVTEIIANTTFYDYEAKYQTGGSRHIIPAPIDADIYAEVQRVTLAAHKALGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD   P   ++  LE+N QPGMTP S+ PE+A  AGYS+ EL+ WMVE+AS
Sbjct: 246 RGVSRADFRFDDTRPGKPELILLEVNTQPGMTPTSLVPELANLAGYSYGELVSWMVEEAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CDR 308


>gi|254292779|ref|YP_003058802.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
 gi|254041310|gb|ACT58105.1| D-alanine/D-alanine ligase [Hirschia baltica ATCC 49814]
          Length = 302

 Score =  226 bits (576), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 133/300 (44%), Positives = 190/300 (63%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG SSEREVSLSSG+  A A  + GF V +ID+ R +   L    PD+  N LHG
Sbjct: 4   VAVIMGGWSSEREVSLSSGRGMAQAARNEGFDVVEIDITRDLSNQLKEANPDVVLNALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+LEIPY+HSG+LASAL+MDK +S+ V +  G+ V    +  +  + +
Sbjct: 64  PYGEDGCVQGLLEILEIPYSHSGVLASALAMDKAKSRNVYARMGLLVAEGGVYAKEDVAA 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP+  GSS G++++ +  + P   L    W  GD +L+EQ++ G ELT  
Sbjct: 124 EHVMKPPYVVKPIAEGSSFGVLIVPEGANRPPAELLDPKWGFGDSVLVEQFIPGRELTVS 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V                D+Y Y  KY +  S HV+PA+I   + +     A +AH A+GC
Sbjct: 184 V-MGNEALAVTEITTLRDYYDYSAKYEAGGSKHVIPAEISDAVTQAALDAALIAHDALGC 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG+SRSDF +D  ++++  LE N QPGMTP S+ PE AA+ G S+ +L+ WM+EDASC R
Sbjct: 243 RGVSRSDFRYDDDTKRLVILETNTQPGMTPTSLVPEQAAHKGISYEKLVRWMIEDASCHR 302


>gi|83858912|ref|ZP_00952434.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
 gi|83853735|gb|EAP91587.1| D-alanine--D-alanine ligase B [Oceanicaulis alexandrii HTCC2633]
          Length = 304

 Score =  226 bits (575), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 138/299 (46%), Positives = 191/299 (63%), Gaps = 2/299 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S ER+VSL SG+    ALE  G++VS ID  D      L  +KPD+ FN LH
Sbjct: 5   VAVLLGGRSPERDVSLVSGRKVIEALEAKGYQVSPIDPRDHDWIDQLDGVKPDVVFNALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG VQ +L+ L  PYTHSG+ ASAL+MDK R+K V+   G+      L++RF   
Sbjct: 65  GDWGEDGRVQGVLDYLGYPYTHSGVAASALAMDKQRAKAVLREAGIQCPEGQLISRFEAA 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H++ PPYV KP   GSS+G++++ +  + P  +L S  W + +++LIE+++ G ELT 
Sbjct: 125 RDHVMKPPYVAKPNAQGSSVGVVIVPEGANRPPAILGSEDWPYDEEVLIERFIPGRELTV 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            VM           VPK+ FY Y+ KYS   S H LPA +P  ++ E    A  AHQ +G
Sbjct: 185 AVM-GDKPLTVTEIVPKTAFYDYDAKYSDGGSVHQLPADVPQAVFDECMAEALKAHQVLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           CRG++RSDF +DP +  V+ LEIN QPGMTP S+ PE AA+ G  F +L+ WMVE+A+C
Sbjct: 244 CRGLTRSDFRYDPETGGVWLLEINTQPGMTPTSLAPEQAAHCGIGFPDLVAWMVENAAC 302


>gi|254503140|ref|ZP_05115291.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
 gi|222439211|gb|EEE45890.1| putative D-ala D-ala ligase N-terminal domain protein [Labrenzia
           alexandrii DFL-11]
          Length = 327

 Score =  225 bits (574), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 216/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE+AG++VS++DVDR+V  VL  L+PD+AFN LHG
Sbjct: 25  VAVLMGGWVNERPVSLSSGKECAIALEEAGYRVSRVDVDRNVSAVLTELQPDVAFNALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ILE L IPYTHSG++AS+L+M+K+++K V+++ G+PV    +VNR  +  
Sbjct: 85  PFGEDGCVQGILEFLNIPYTHSGVMASSLAMNKVKAKAVMAAAGIPVTEHKVVNRHDISR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 145 EHPMEPPYVLKPINEGSSFGVLIVKEDQEFPPQELHREDWPYPDVLMCEKFIRGRELTCA 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  D +L V +I     +FY ++ KY+   S H+LPAKI   +Y+  + LA  AHQA+GC
Sbjct: 205 VKDDQALGVIDIVTQGQEFYDFDAKYAEGGSKHILPAKISPLVYQTAETLAVKAHQALGC 264

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S  +  LE+N QPGMTP S+ PEMAAY G SF++L+ WMVEDAS
Sbjct: 265 RGVSRADFRFDEREDGSGDLICLEVNTQPGMTPTSLVPEMAAYKGMSFKDLVSWMVEDAS 324

Query: 298 CLR 300
           C R
Sbjct: 325 CCR 327


>gi|315122574|ref|YP_004063063.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
 gi|313495976|gb|ADR52575.1| D-alanine--D-alanine ligase [Candidatus Liberibacter solanacearum
           CLso-ZC1]
          Length = 311

 Score =  225 bits (572), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 224/300 (74%), Positives = 270/300 (90%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSER+VSL SG+ CA+ALED GFKV+ IDVDRS+GL+L+HLKPD+AFN LHG
Sbjct: 12  VVVLMGGISSERDVSLLSGRVCAAALEDWGFKVTSIDVDRSIGLILSHLKPDIAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDGL+Q+ILE LEIPYTHSGILASALSMDKMR+K++VSS GV VCPS+LVNR TMDS
Sbjct: 72  GFGEDGLIQSILEFLEIPYTHSGILASALSMDKMRAKKIVSSSGVSVCPSVLVNRITMDS 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           QH++SPPY+IKPLKGGSSLG+IV+ + +S+PLD+LQSSSW HGDQLL+EQY++GIEL+CG
Sbjct: 132 QHVMSPPYIIKPLKGGSSLGVIVVTEGESVPLDVLQSSSWIHGDQLLVEQYINGIELSCG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI   KSDFY+Y+ KYSS  S+HVLPA IP  I +EV+R++ +AHQAIGC
Sbjct: 192 IMGEQALSVTEIVSQKSDFYTYDSKYSSSVSSHVLPANIPWSILQEVRRISVVAHQAIGC 251

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RGISRSDF+FDP+S+++FWLEIN QPGMT VSIFPEMAAYAGYSFR+LLLWM+EDASC R
Sbjct: 252 RGISRSDFIFDPVSKEIFWLEINTQPGMTNVSIFPEMAAYAGYSFRDLLLWMLEDASCSR 311


>gi|260576896|ref|ZP_05844879.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
 gi|259020933|gb|EEW24246.1| D-alanine/D-alanine ligase [Rhodobacter sp. SW2]
          Length = 307

 Score =  223 bits (569), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG+ CA AL +AGF+V ++D DR +   L+ ++PD+ FN LHG
Sbjct: 12  VAVLMGGLSAEREVSLVSGRECAQALREAGFQVIEVDADRDLCARLSEIQPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L +PYTHSG+LASAL+MDK R+K+   + G+P+  S L     + +
Sbjct: 72  RWGEDGCVQGMLEWLGLPYTHSGVLASALAMDKARAKEAYRAAGLPIVESRLACTAEVKA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ +++   + P  L         + +++E Y  G ELT  
Sbjct: 132 RHVMPPPYVVKPNNEGSSVGVYLVQDAANSPPQLGADMP----EVVMVETYAPGRELTVS 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+ +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC
Sbjct: 188 VMGERALAVTDII--TTGWYDYDAKYKPGGSRHVVPADLPQEITAACLEYALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AA  G SF EL  WMVEDASC
Sbjct: 246 RGLSRTDFRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAQCGISFPELCRWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 NR 307


>gi|110634354|ref|YP_674562.1| D-alanine--D-alanine ligase [Mesorhizobium sp. BNC1]
 gi|123353549|sp|Q11GS8|DDL_MESSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110285338|gb|ABG63397.1| D-alanine--D-alanine ligase [Chelativorans sp. BNC1]
          Length = 308

 Score =  223 bits (568), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 169/303 (55%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSG +CA ALE  G++VS++DV R V  VL+ LKPD+AFN LHG
Sbjct: 6   VAVLMGGFSSERPVSLSSGNSCADALEAEGYRVSRVDVSRDVSRVLSELKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE L IPYTHSG+LASAL+MDK  +K V  S G+PV  S ++NRF +  
Sbjct: 66  PFGEDGTVQGVLEYLGIPYTHSGVLASALAMDKDLAKTVAKSAGIPVASSRVMNRFEIGD 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H + PPYV+KP+  GSS G++++++ QS P  +L S+ W +G+++++E+Y+ G ELTC 
Sbjct: 126 KHPMEPPYVVKPVAEGSSFGVVIVREGQSHPPQVLGSAEWGYGERVMVERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L V EI      FY Y+ KY+   S HV PA+I  +IY++++RLA  AHQAIGC
Sbjct: 186 VMGDRVLGVCEIVPVGHSFYDYDSKYAPGGSRHVCPAEISPNIYQKIERLALKAHQAIGC 245

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D   P    + WLEIN QPGMTP S+ P++AA AG  F  LL WMVEDAS
Sbjct: 246 RGVSRSDFRYDDRLPGEEGIVWLEINTQPGMTPTSLVPDIAAQAGIGFGALLSWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CPR 308


>gi|307944891|ref|ZP_07660228.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
 gi|307771815|gb|EFO31039.1| D-alanine--D-alanine ligase [Roseibium sp. TrichSKD4]
          Length = 309

 Score =  222 bits (566), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 159/303 (52%), Positives = 218/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ CA+ALE  G+KV+++DVDR +  VLA L+PD+AFN LHG
Sbjct: 7   VAVLMGGWVNERPVSLSSGEGCAAALEKGGYKVTRVDVDRDIASVLADLRPDVAFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+LEIPYTHSG++ASAL+M+K ++K V++  G+PV   ++VNRF +  
Sbjct: 67  PFGEDGCIQGILEILEIPYTHSGVMASALAMNKDKAKAVMAEAGIPVTEHLIVNRFHVGH 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+I++K+DQ  P   L    W + D L+ E+++ G ELTC 
Sbjct: 127 DHPMKPPYVLKPINEGSSFGVIIVKEDQPHPPQELTREDWPYPDDLMCEKFIGGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMG+  L V E+    + FY ++ KY+   S H+LPAKI   +Y+E+Q+L+  AHQA+GC
Sbjct: 187 VMGEKPLGVIEVVPTGNSFYDFDAKYAEGGSKHILPAKISPFVYQEIQKLSVEAHQALGC 246

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     S  +  LE+N QPGMTP S+ PEMA + G S+ EL+ WMVE+AS
Sbjct: 247 RGVSRADFRFDEREDGSGNLVCLEVNTQPGMTPTSLVPEMAEHEGMSYVELVSWMVEEAS 306

Query: 298 CLR 300
           C R
Sbjct: 307 CCR 309


>gi|163760783|ref|ZP_02167863.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
 gi|162282105|gb|EDQ32396.1| D-alanine--D-alanine ligase [Hoeflea phototrophica DFL-43]
          Length = 312

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 164/303 (54%), Positives = 217/303 (71%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL++G  CA ALE AG+KV+++DV   V  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGFSSERPVSLATGNPCADALESAGYKVTRVDVGTDVASVLTELKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L IPYTHSG+ ASAL+MDK  SK V  + G+PV  S ++NR    S
Sbjct: 70  PFGEDGSIQGVLEYLGIPYTHSGVTASALAMDKRLSKIVAKAVGIPVAESKVMNRHDFTS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G+++++++Q+ P  ++ SS W +GD++++E+YV G ELTC 
Sbjct: 130 AHPMQPPYVVKPVNEGSSFGVVIVQENQTHPPQVITSSEWKYGDEVMVERYVPGRELTCT 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +MG+ +L VTEI      FY Y+ KY +  S HV PA+I   +Y++++RLA  AHQAIGC
Sbjct: 190 IMGNVALAVTEIVPQGHSFYDYDSKYVAGGSKHVCPAEISPIVYQKIRRLALKAHQAIGC 249

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF +D     + +V WLEIN QPGMTP S+ PEMA  AG+SF E + WMVEDAS
Sbjct: 250 RGVSRSDFRYDDRFSENGEVIWLEINTQPGMTPTSLAPEMALQAGHSFEEFVSWMVEDAS 309

Query: 298 CLR 300
           C R
Sbjct: 310 CRR 312


>gi|158426185|ref|YP_001527477.1| D-alanine--D-alanine ligase [Azorhizobium caulinodans ORS 571]
 gi|190359111|sp|A8HZA8|DDL_AZOC5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158333074|dbj|BAF90559.1| D-alanine ligase [Azorhizobium caulinodans ORS 571]
          Length = 306

 Score =  222 bits (566), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 161/303 (53%), Positives = 215/303 (70%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S EREVSL SG  CA ALE+ G++V+++DVDR V  VLA LKPD+A N+LHG
Sbjct: 5   VAVLMGGWSPEREVSLRSGAGCAKALEEVGYRVTRVDVDRDVAEVLARLKPDVALNLLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK R+K V+++ G+PV    LV R     
Sbjct: 65  CPGEDGTIQGILEILRIPYSHSGVLASALAMDKARAKVVMAAAGIPVPGGHLVTRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP  GGSS+G+ ++K+DQ  P   L  + W  G+ L+ E ++ G+ELTCG
Sbjct: 125 GHVLPPPYVLKPNTGGSSVGVFIVKEDQPHPPQELFRADWTFGESLMAEPFIKGLELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV         FY YE KY++  S H+LPA++   IY++V+ LA  AH+A+GC
Sbjct: 185 VMGDRALDVI-EVEAVHGFYDYESKYAAGGSRHILPARVLPQIYQQVRMLALEAHRALGC 243

Query: 241 RGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISR+DF +D   P  + +  LE+N QPGMT  S+ P+MAA+AG SF EL+ WMVEDA+
Sbjct: 244 RGISRADFRYDDTLPDGKGLVCLEVNTQPGMTETSLVPDMAAHAGISFGELVTWMVEDAT 303

Query: 298 CLR 300
             R
Sbjct: 304 LDR 306


>gi|328542969|ref|YP_004303078.1| D-alanine--D-alanine ligase B [polymorphum gilvum SL003B-26A1]
 gi|326412715|gb|ADZ69778.1| D-alanine--D-alanine ligase B [Polymorphum gilvum SL003B-26A1]
          Length = 308

 Score =  222 bits (565), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 163/303 (53%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSG+ACA ALE  G++V++IDVDR++  VLA  KPD+AFN LHG
Sbjct: 6   VAVLMGGWVNERPVSLSSGRACADALEARGYRVTRIDVDRTIAAVLAEAKPDVAFNALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG++ASAL+M+K+++K V+++ GVPV    +V+R ++ S
Sbjct: 66  PFGEDGCIQGILEILQIPYTHSGVMASALAMNKVKAKAVMAAAGVPVTEHRIVDRRSIGS 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H ++PPYV+KP+  GSS G++++K+D   P   L    W + D L+ E+Y+ G ELTC 
Sbjct: 126 EHPMAPPYVLKPINEGSSFGVLIVKEDAQFPPQELSRDDWPYPDVLMCERYIPGRELTCA 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V +I      FY YE KY+   S H+LPAKI   IY+EVQ+L   AHQA+GC
Sbjct: 186 VMGDRALGVIDIVPLGHGFYDYEAKYAEGGSQHILPAKISPIIYQEVQKLTLTAHQALGC 245

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD  +     +  LE+N QPGMTP S+ PE+AA+ GY F +L+ WMVEDAS
Sbjct: 246 RGVSRADFRFDEKADGTSSLICLEVNTQPGMTPTSLVPELAAHEGYDFGDLVTWMVEDAS 305

Query: 298 CLR 300
           C R
Sbjct: 306 CCR 308


>gi|114570624|ref|YP_757304.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
 gi|122315584|sp|Q0AMX1|DDL_MARMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114341086|gb|ABI66366.1| D-alanine--D-alanine ligase [Maricaulis maris MCS10]
          Length = 304

 Score =  222 bits (564), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 147/301 (48%), Positives = 197/301 (65%), Gaps = 2/301 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ER+VSL +G ACA  L DAG++V +ID  R +   LA   PD+ FN LHG
Sbjct: 5   IAVLMGGLSPERDVSLVTGAACAKGLRDAGYEVVEIDAGRHLSQQLADADPDVVFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDGLVQ +LE    PYTHSG+LASAL+MDK ++K V+ + G+P    I+ NRF    
Sbjct: 65  EWGEDGLVQGVLEHFGKPYTHSGVLASALAMDKQKAKDVLRAAGIPCPEGIIANRFEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV KP   GSS+G+ ++ +  + P   L S++W  GD++LIE+YV G ELT  
Sbjct: 125 AHVMKPPYVAKPNAQGSSVGVHIVLEGANRPPAELGSTAWALGDEILIERYVPGRELTVA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D +L       P + FY YE KY++  S H+LPA I  +I +    LA  AH+A+GC
Sbjct: 185 VMEDRALC-VTEIKPNTTFYDYEAKYTAGGSDHILPAPISAEIAELAMDLAVRAHRALGC 243

Query: 241 RGISRSDFLFDPLSRKV-FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG++RSDF +D  +    + LEIN QPGMTP S+ PE A Y G  F +L+ WM E+ASC 
Sbjct: 244 RGMTRSDFRYDSAADTPLWLLEINTQPGMTPTSLAPEQAQYCGIEFSDLVAWMAENASCR 303

Query: 300 R 300
           R
Sbjct: 304 R 304


>gi|170748771|ref|YP_001755031.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
 gi|190359165|sp|B1LXZ1|DDL_METRJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|170655293|gb|ACB24348.1| D-alanine--D-alanine ligase [Methylobacterium radiotolerans JCM
           2831]
          Length = 307

 Score =  222 bits (564), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKACA ALE  G++V+++DV   +  VL  L+PD AFN LHG
Sbjct: 5   VAVLLGGTSAEREVSLNSGKACADALEGEGYRVTRVDVGPDIASVLTALRPDAAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M+K R+K V+ + GV V    +VNR     
Sbjct: 65  PDGEDGTIQGLLEILKIPYTHSGVLASALAMNKERAKTVMRAAGVDVPEGRIVNRREAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS+G+I+++  +S P  +L S  W  G+Q+L E Y+ G ELTCG
Sbjct: 125 THPLPPPYVVKPIAEGSSVGVIIVRDGRSHPPQILASEEWTFGEQVLAEPYIAGRELTCG 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V E+     D+Y Y+ KY+   S HVLPA++  ++Y+ VQ L+  AHQA+GC
Sbjct: 185 VMGDKALGVIEVKAATGDWYDYDAKYAPGGSVHVLPAELKPNVYQRVQELSLTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PEMAA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGLLVVLEVNTQPGMTQTSLVPEMAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|114799909|ref|YP_759123.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
 gi|122942769|sp|Q0C570|DDL_HYPNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114740083|gb|ABI78208.1| D-alanine--D-alanine ligase [Hyphomonas neptunium ATCC 15444]
          Length = 306

 Score =  220 bits (561), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 136/300 (45%), Positives = 195/300 (65%), Gaps = 1/300 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER VSLSSG+  A+A   AG+ V++IDV R +   LA  +PD+  N LHG
Sbjct: 8   VAVIYGGWSSERPVSLSSGQQMAAAARKAGYDVTEIDVTRELASQLAEAEPDVVLNGLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE++ +PY+HSG+LASAL+MDK++SK V  S G+ V     V R    +
Sbjct: 68  PWGEDGCVQGLLEVMGLPYSHSGVLASALAMDKLKSKAVYRSAGLDVAADKRVTRAEAAA 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYV+KP+  GSS G++++++  + P   L   +W +GD L+ E+Y+ G ELT  
Sbjct: 128 AHALPPPYVVKPVNEGSSFGVLIVREGANGPPHELTGPNWRYGDYLMAEEYIPGRELTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +           D+Y ++ KY++  S HV+PA +P  + +     A LAH+A+GC
Sbjct: 188 VLGDRA-LAVTEITTLRDYYDFDAKYAAGGSRHVIPADLPAKVTEAAMDAALLAHRALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG +RSDF +D    ++  LE N QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 247 RGATRSDFRYDEQKDRLVILETNTQPGMTPTSLVPEQAAHMGMSFEDLVAWMIEDASCQR 306


>gi|103487362|ref|YP_616923.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
 gi|123379717|sp|Q1GRY2|DDL_SPHAL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|98977439|gb|ABF53590.1| D-alanine--D-alanine ligase [Sphingopyxis alaskensis RB2256]
          Length = 308

 Score =  220 bits (559), Expect = 2e-55,   Method: Composition-based stats.
 Identities = 134/302 (44%), Positives = 193/302 (63%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SGK  A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSAEREVSLMSGKGVADALESRGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+   YTHSG++ S +++DK  +KQ +   G+P+    +V+  ++ S
Sbjct: 68  VPGEDGTVQGMLDLMGFRYTHSGLVTSVIAIDKELTKQALVPHGIPMPTGTMVDSESLFS 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +++ D +    + +     W   D+LL E ++ G ELT
Sbjct: 128 VDPLPRPYVLKPVNEGSSVGVAIVRDDSNYGNPISRDALGPWQQFDRLLAEPFIKGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +L VTE+ V KS FY Y+ KY+   + HV PA +P D+ + ++ LA  AH+ +
Sbjct: 188 VAVLGDTALAVTELRV-KSGFYDYDAKYTDGLTEHVCPADVPDDVAQRMKDLALQAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + EL+  +VE+A
Sbjct: 247 GCKGASRSDFRWDDEHGLAGIFLLEVNTQPGMTPLSLVPEQARAVGMDYAELVERIVEEA 306

Query: 297 SC 298
             
Sbjct: 307 LT 308


>gi|114705266|ref|ZP_01438174.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
 gi|114540051|gb|EAU43171.1| D-alanine-D-alanine ligase protein [Fulvimarina pelagi HTCC2506]
          Length = 307

 Score =  219 bits (558), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 170/303 (56%), Positives = 221/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSER VSL SG+ACA+ALE  GF+VS++DVDR V   LA LKPD+AFN LHG
Sbjct: 5   VAVLMGGLSSERPVSLRSGEACAAALEGEGFQVSRVDVDRKVAETLATLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q ILE L+IPYTHSG+ ASAL+M+K+ +K VV S GVPV    ++ R  +  
Sbjct: 65  PYGEDGRIQGILEYLQIPYTHSGVTASALAMNKLLAKTVVISAGVPVAKGHVMKRQEIAD 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  SPPYVIKP+  GSS G+I++++DQ  P   L S  W  G+ LL+EQ+V G ELTC 
Sbjct: 125 THPFSPPYVIKPIAEGSSFGVIIVREDQPHPPQSLSSPEWTFGEDLLVEQFVHGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +LDV EI      FY Y+ KYS   S H++PA+IP D+ +++Q  + LAH+AIGC
Sbjct: 185 VMGDVALDVCEITTEGHAFYDYDSKYSDGGSVHIVPAEIPGDVARKIQEWSLLAHRAIGC 244

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++RSDF +D       +V WLE+N QPGMTPVS+ P++AA +G+SF +L+ WMVEDAS
Sbjct: 245 RGVTRSDFRYDDRFGSGGEVAWLEVNTQPGMTPVSLVPDIAAKSGHSFADLVRWMVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CER 307


>gi|222149132|ref|YP_002550089.1| D-alanine--D-alanine ligase [Agrobacterium vitis S4]
 gi|221736117|gb|ACM37080.1| D-alanine:D-alanine ligase [Agrobacterium vitis S4]
          Length = 300

 Score =  219 bits (557), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 162/298 (54%), Positives = 217/298 (72%), Gaps = 3/298 (1%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           GG SSER VSL+SG  CASALE+ G++V+++DV R +  VL  LKPD+ FN LHG FGED
Sbjct: 3   GGFSSERPVSLASGAPCASALEEHGYRVTRVDVTRDIASVLHDLKPDVVFNALHGPFGED 62

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
           G +Q ILE L IPYTHSG+LASAL+MDK ++K V ++ G+PV  +  ++RF + + H I 
Sbjct: 63  GTIQGILEYLSIPYTHSGVLASALAMDKTQAKIVAAAAGIPVAFARQMSRFEIGNVHPIE 122

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
           PPYV+KP++ GSS G++++K+DQS P  +L SS W +GD +++E YV G ELTCGVM   
Sbjct: 123 PPYVVKPVREGSSFGVVIVKEDQSHPPQILGSSEWRYGDTVMVESYVAGRELTCGVMDGK 182

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +L VTE+    + FY Y+ KY++  STHV+PA++   IY+++Q L+  AH AIGCRG+SR
Sbjct: 183 ALAVTEVIAKANTFYDYDSKYAAGGSTHVIPAQLSPKIYQKIQDLSVRAHNAIGCRGVSR 242

Query: 246 SDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SDF +D        + WLE+N QPGMTP S+ PEMAA+AG SF E + WMVEDASC R
Sbjct: 243 SDFRYDDRFSEDGDLIWLEVNTQPGMTPTSLVPEMAAHAGISFGEFVSWMVEDASCSR 300


>gi|302383797|ref|YP_003819620.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
 gi|302194425|gb|ADL01997.1| D-alanine/D-alanine ligase [Brevundimonas subvibrioides ATCC 15264]
          Length = 311

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 149/303 (49%), Positives = 204/303 (67%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+SSER+VSLSSGK CA ALE  G +V+++D  R +  VLA LKPD+  N LHG
Sbjct: 10  VAVLLGGLSSERDVSLSSGKGCADALEAQGARVTRVDAGRDLAQVLAELKPDVVLNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K V+++ GV V    L +R  + +
Sbjct: 70  EWGEDGCVQGILETLQIPYTHSGVLASALTMDKDKTKAVLNAAGVKVPGGGLFDRHAVSA 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I PPYVIKP   GSS+G+ ++++    P     S SW +GD +++E Y+ G EL   
Sbjct: 130 GHVIPPPYVIKPNAEGSSVGVYLVREG-DAPQPEPGSDSWTYGDLVMVEPYIPGKELAVA 188

Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+A+           P   FY YE KY+   S H LPA +P  +++   R +  AH A
Sbjct: 189 VIGEATGPRALTVTDITPVKGFYDYEAKYAPGGSVHKLPADLPPHVFEAAMRESEQAHAA 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG+SRSDF +D +  ++  LE+N QPGMTP S+ PE AAY G S+++L+ WMVEDAS
Sbjct: 249 LGCRGVSRSDFRYDDVKDELVLLEVNTQPGMTPTSLVPEQAAYCGMSYQDLVRWMVEDAS 308

Query: 298 CLR 300
           C R
Sbjct: 309 CPR 311


>gi|329888138|ref|ZP_08266736.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
 gi|328846694|gb|EGF96256.1| D-alanine--D-alanine ligase family protein [Brevundimonas diminuta
           ATCC 11568]
          Length = 312

 Score =  218 bits (556), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 152/303 (50%), Positives = 207/303 (68%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSLSSG+ CA ALE    KV+++D  R +  VL  LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLSSGRGCADALEGQVAKVTRVDAGRDLAQVLTALKPDVVFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK +SK V+ + GV V    L +R  + S
Sbjct: 70  KWGEDGCVQGILETLKIPYTHSGVLASALAMDKDKSKAVLQAAGVIVPGGGLFDRHEVAS 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I PPYV+KP   GSS+G+ V ++  + P+  + +  W +GDQ+++E ++ G EL   
Sbjct: 130 RHVIEPPYVVKPNAEGSSVGVYVAREGANRPVAEVGAEDWAYGDQVMVEPFIPGKELAVS 189

Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+A+           P   FY YE KY+   S HVLPA++P  ++ +  R A LAH A
Sbjct: 190 VIGEATGPRALTITDITPTKGFYDYEAKYAPGGSRHVLPAELPPHVFDKALRQAELAHAA 249

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG+SR+DF +D ++  +  LE+N QPGMTP S+ PE AA+ G  +REL+ WMVEDAS
Sbjct: 250 MGCRGVSRADFRYDDVNDVLVLLEVNTQPGMTPTSLVPEQAAFVGMDYRELVRWMVEDAS 309

Query: 298 CLR 300
           C R
Sbjct: 310 CPR 312


>gi|188582372|ref|YP_001925817.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
 gi|229485965|sp|B1ZGP9|DDL_METPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179345870|gb|ACB81282.1| D-alanine--D-alanine ligase [Methylobacterium populi BJ001]
          Length = 307

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTDLKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I++++++S P  +L S  W +G+++L E Y+ G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVREERSHPPQILASDEWVYGEEVLAETYIAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGLSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|254470440|ref|ZP_05083844.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
 gi|211960751|gb|EEA95947.1| D-alanine--D-alanine ligase B [Pseudovibrio sp. JE062]
          Length = 307

 Score =  218 bits (554), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 219/303 (72%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  +ER VSLSSGK CA ALE AG++V+++DVDR++  VL  LKPD+AFN LHG
Sbjct: 5   VAVLMGGWVAERPVSLSSGKDCADALEAAGYQVTRVDVDRNISAVLQDLKPDVAFNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE+L+IPYTHSG+++SAL+M K ++K V+ + GVPV  S++V+R     
Sbjct: 65  PFGEDGAIQGILEVLDIPYTHSGVMSSALAMHKEKAKAVMKAAGVPVANSLVVSRADAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP+  GSS G++++K+ Q  P   L    W +G+ L++E+Y+ G ELTC 
Sbjct: 125 RHVMEPPYVIKPINEGSSFGVLIVKEGQEYPPQELTRDDWEYGELLMVERYIPGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V EI      +Y Y+ KY    S H+LPA+I   +Y+E+Q+ +  AH A+GC
Sbjct: 185 VMGDVALGVLEIVPLGHAYYDYDAKYVPGGSQHILPAEILPSVYQEIQKSSLKAHHALGC 244

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG++R+DF F+       ++  LE+N QPGMTP S+ PE+AA+AG+ F+EL+ W+VEDAS
Sbjct: 245 RGVTRADFRFNEGPGGLGELICLEVNTQPGMTPTSLLPEIAAHAGHDFQELVSWIVEDAS 304

Query: 298 CLR 300
           C R
Sbjct: 305 CGR 307


>gi|148556844|ref|YP_001264426.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
 gi|190359229|sp|A5VDC2|DDL_SPHWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148502034|gb|ABQ70288.1| D-alanine--D-alanine ligase [Sphingomonas wittichii RW1]
          Length = 312

 Score =  217 bits (553), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 187/304 (61%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG   A ALE  G KV++ID+DR V L LA  KPD+ FN LHG
Sbjct: 7   IAVLMGGWSSEREVSLTSGNGVADALESLGHKVTRIDMDRDVALRLAEAKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+ +   I+V   ++ +
Sbjct: 67  TPGEDGTVQGMMDLMGLTYTHSGLTTSVIAIDKELTKQQLVPHGIRMPEGIIVESESLHA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ +IK+  +  + + + S   W     LL E ++ G ELT
Sbjct: 127 GDPMPRPYVLKPVNEGSSVGVAIIKERDNHGVPIHRDSHGPWQTFATLLAEPFIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V            VP S FY YE KY+   +TH+ PA +P DI +   R+A  AH+ +
Sbjct: 187 VAV-LGNRALGVTELVPSSGFYDYEAKYTDGLTTHICPADVPADIAEAAMRMALDAHRLL 245

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D    +  ++ LE+N QPGMTP+S+ PE A + G ++ +L+  +V++A
Sbjct: 246 GCKGTSRSDFRWDDERGEAGLYLLEVNTQPGMTPLSLVPEQARHVGLTYADLVQAIVDEA 305

Query: 297 SCLR 300
              +
Sbjct: 306 LAGK 309


>gi|254562111|ref|YP_003069206.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
 gi|254269389|emb|CAX25355.1| D-alanine--D-alanine ligase [Methylobacterium extorquens DM4]
          Length = 307

 Score =  217 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 157/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  LKPD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELKPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|259419137|ref|ZP_05743054.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
 gi|259345359|gb|EEW57213.1| D-alanine--D-alanine ligase [Silicibacter sp. TrichCH4B]
          Length = 308

 Score =  217 bits (551), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+ FN LHG
Sbjct: 13  VAMLMGGPSAEREVSLSTGRECARALRGEGYEVVEVDAGPDLVAQLKDIKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L IPYTHSG+LASAL+MDK RSK      G+PV  S+L ++  + +
Sbjct: 73  RWGEDGCVQGILEWLRIPYTHSGVLASALAMDKERSKAAYRIAGLPVVDSVLASKDEVMA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+I+PPYV+KP   GSS+GI ++ +  + P  L          ++++E Y  G E+T  
Sbjct: 133 GHVIAPPYVVKPNNEGSSVGIYIVHEAANSPPQLSDEMPA----RVMVETYAPGREMTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA +P +I       A  AH  +GC
Sbjct: 189 VMGDRALCVTDIL--TDGWYDYEAKYATGGSRHVLPADVPEEITNLCLDYAARAHDVLGC 246

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 247 RGISRTDFRWDEARGAEGLVLLETNTQPGMTPTSLSPEQAEHCGITFGQLCAWLVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 ER 308


>gi|85703762|ref|ZP_01034866.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
 gi|85672690|gb|EAQ27547.1| D-alanine--D-alanine ligase [Roseovarius sp. 217]
          Length = 296

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 139/301 (46%), Positives = 190/301 (63%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAATDLCTRLQDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + + 
Sbjct: 62  WGEDGCVQGMLEWLGLPYTHSGVLSSALAMDKERTKVAYRAAGLPVVDSVLARRDEVRAG 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV+KP   GSS+G+ +++   + P  L         D +++E Y  G ELT  V
Sbjct: 122 HVMPPPYVVKPYNEGSSVGVYLVEAGANRPPALSDDMP----DVVMVESYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD +L VT+I      +Y Y+ KY    S HV+PA +P +I+      A  AH+ +GCR
Sbjct: 178 IGDRALTVTDIL--TEGWYDYDAKYKPGGSRHVVPADVPQEIFDACLDYALRAHEVLGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE A   G SF EL  WMVEDASC 
Sbjct: 236 GVSRTDFRWDEARGLDGLILLETNTQPGMTPTSLVPEQAQALGISFPELCRWMVEDASCN 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|240139699|ref|YP_002964176.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
 gi|240009673|gb|ACS40899.1| D-alanine--D-alanine ligase [Methylobacterium extorquens AM1]
          Length = 307

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|254509513|ref|ZP_05121580.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
 gi|221533224|gb|EEE36212.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium KLH11]
          Length = 297

 Score =  216 bits (550), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 142/301 (47%), Positives = 194/301 (64%), Gaps = 7/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   GF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALVGEGFEVVELDAGPDLYARLLDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + IPYTHSG+L+SAL+MDK RSK++  + G+P+ PS++V +  +   
Sbjct: 62  WGEDGCVQGLLEWMRIPYTHSGVLSSALAMDKQRSKEIYQTEGLPIVPSVIVPKVEVVVA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV KP   GSS+GI ++ ++ + P  L  +      D +++E+YV G ELT  V
Sbjct: 122 HVMEPPYVAKPNNEGSSVGIYIVHENANGPPQLDAAMP----DHVMVEKYVAGRELTVTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +       +    +Y Y+ KY    S HVLPA IP DI+      A  AH A+GCR
Sbjct: 178 MGDRA-LTVTEIMTDGGWYDYDAKYKPGGSWHVLPADIPQDIFDRCMDYALKAHDALGCR 236

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R+D+ +D       +F LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC 
Sbjct: 237 GVTRTDYRWDDSMGADGLFLLETNTQPGMTPTSLVPEQAAHIGMSFGQLCAWMVEDASCD 296

Query: 300 R 300
           R
Sbjct: 297 R 297


>gi|298293095|ref|YP_003695034.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
 gi|296929606|gb|ADH90415.1| D-alanine/D-alanine ligase [Starkeya novella DSM 506]
          Length = 306

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 212/303 (69%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+ACA A E  G++V+++DV R +  VL  LKPD+A N LHG
Sbjct: 5   VAVLMGGWSSERQVSLWSGEACAKAAESVGYRVTRVDVGRDIAQVLTELKPDVALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L++PYTHSG+LASAL+MDK ++K ++++  VPV    +V R     
Sbjct: 65  PYGEDGTIQGVLEFLQVPYTHSGVLASALAMDKAQAKIILAASDVPVPEGRVVTRAEAAR 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP+  GSS+G+ +IK+DQ  P   L    W HGD LL E+Y+ G+ELTC 
Sbjct: 125 GHVLPRPYVLKPVSEGSSVGVFIIKEDQEHPPQELHRPDWPHGDLLLAERYIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L V         FY YE KY+   S H+LPA+I  ++Y++V+ LA  AH+A+GC
Sbjct: 185 VMGDEALGVI-EIQSDLRFYDYEAKYTPGGSVHILPARILPNVYQKVRMLAVKAHRALGC 243

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RGISRSDF +D  +     +  LE+N QPGMT +S+ PE+AA+AG+SF EL+ WMVEDAS
Sbjct: 244 RGISRSDFRYDDRTGDESGLVCLEVNTQPGMTELSLVPELAAHAGHSFGELVRWMVEDAS 303

Query: 298 CLR 300
             R
Sbjct: 304 LDR 306


>gi|218531123|ref|YP_002421939.1| D-alanine--D-alanine ligase [Methylobacterium chloromethanicum CM4]
 gi|254767733|sp|B7KSC6|DDL_METC4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218523426|gb|ACK84011.1| D-alanine/D-alanine ligase [Methylobacterium chloromethanicum CM4]
          Length = 307

 Score =  216 bits (549), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 213/303 (70%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA+ALE  G++V+++DV   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAAALEGEGYRVTRVDVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|294676380|ref|YP_003576995.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
 gi|294475200|gb|ADE84588.1| D-alanine--D-alanine ligase [Rhodobacter capsulatus SB 1003]
          Length = 307

 Score =  216 bits (549), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 144/302 (47%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG+ CA AL  AG+ V++ID    +   L  L PD+ FN LHG
Sbjct: 12  VAVLMGGPSAEREVSLSSGRECAKALRAAGYDVAEIDAGADLAERLRALMPDVVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L ++  + +
Sbjct: 72  RWGEDGCVQGILEWLRLPYTHSGVLASALAMDKTRAKAAYKAAGLPVVESRLASKAEVMA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP   GSS+G+ ++    + P  L         + +++E Y  G ELTC 
Sbjct: 132 AHVLPAPYVVKPNNEGSSVGVYLVLDGANRPPQLSDEMP----EVVMVETYAPGRELTCT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VTEI    + +Y Y  KY++  S HV PA++P  I + ++  A  AH+A+GC
Sbjct: 188 VMGDRALCVTEIV--TTGWYDYAAKYTAGGSRHVCPAELPAGIAETIRDYALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AA  G SF +L  WMVEDASC
Sbjct: 246 RGVSRTDFRWDESRGTAGLILLETNTQPGMTPTSLAPEQAAAEGMSFADLCRWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 DR 307


>gi|126741305|ref|ZP_01756983.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
 gi|126717623|gb|EBA14347.1| D-alanine--D-alanine ligase [Roseobacter sp. SK209-2-6]
          Length = 296

 Score =  215 bits (548), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 144/301 (47%), Positives = 193/301 (64%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   G++V ++D    +   L  + PD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLAERLKEISPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK      G+PV  SIL ++ T+ + 
Sbjct: 62  WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKERSKAAYRVAGLPVTESILADKATVMAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+I+PPYV+KP   GSS+GI ++ +  + P  L  S      + +++E Y  G ELT  V
Sbjct: 122 HVIAPPYVVKPNNEGSSVGIYIVNEGANTPPQLSDSMP----ETVMVEAYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VT+I      +Y YE KY+   S H  PAK+P +I +     A  AH+ +GCR
Sbjct: 178 MGDRALGVTDII--TDGWYDYEAKYAEGGSRHEFPAKVPEEIEELCLAYALKAHEILGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D    K  +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC+
Sbjct: 236 GVSRTDFRWDESKGKDGLILLETNTQPGMTPTSLAPEQAEGIGMSFGQLCAWMVEDASCV 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|299131921|ref|ZP_07025116.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
 gi|298592058|gb|EFI52258.1| D-alanine/D-alanine ligase [Afipia sp. 1NLS2]
          Length = 308

 Score =  215 bits (547), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 152/303 (50%), Positives = 206/303 (67%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V+++DV R +  VLA LKPD+AF  LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALESRGYRVTRVDVQRDIATVLAALKPDVAFMALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYTHSG+LAS+L+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETIGIPYTHSGVLASSLAMQKDLAKTVMATAGVPVAAGLTLSRTDIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H + PPYVIKP+  GSS+G+ ++ ++ + P   L    W+HG++LL+E+YV G ELTC 
Sbjct: 127 AHPMEPPYVIKPVADGSSVGVFIVTEEHAHPPQELFRDDWSHGERLLVEKYVAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +       VP   FY YE KYS   S HVLPA I   +Y+EV+RL   AH ++GC
Sbjct: 187 VIKGEA-SEVTEIVPLLKFYDYEAKYSKGASKHVLPAPILPFVYQEVRRLTLAAHVSLGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|95930728|ref|ZP_01313461.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
 gi|95133208|gb|EAT14874.1| D-alanine--D-alanine ligase [Desulfuromonas acetoxidans DSM 684]
          Length = 305

 Score =  215 bits (546), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 112/303 (36%), Positives = 179/303 (59%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG S+EREVSL +G A   ALE+ G+ V  ID D+++   L   + D+ F  +HG
Sbjct: 8   IGVIMGGTSAEREVSLRTGAAIVKALEECGYTVVAIDADKTLPAQLIEKQIDVVFLAVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG +Q +LEL++IPYT SG+LASAL++DK  +K++V+  GV    + LV+      
Sbjct: 68  RFGEDGTIQGMLELMQIPYTGSGVLASALAIDKAVTKRMVAQDGVTTPAATLVDVNSDVD 127

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                    P V+KP++ GS+LGI +      +   +  + + ++  ++L+E Y+DG E+
Sbjct: 128 DIVAQCGHFPQVVKPVREGSTLGIAIANNADELKQAI--AQARDYDRRVLVEDYIDGREV 185

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VM   +       VP+S FY Y  KY+   + +++PA +P   YK +Q+ A  ++ +
Sbjct: 186 TVSVMNGRA-LSIIEIVPESGFYDYTAKYTVGKTRYLVPAPLPESQYKAIQQAAVASYAS 244

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG +R DF+        ++LE+N  PGMT  S+ P+ AA  G  F +L+  +++DAS
Sbjct: 245 LGCRGAARVDFMVT--DDNFYFLEVNTIPGMTETSLLPKAAADCGMDFAKLVEGILDDAS 302

Query: 298 CLR 300
             R
Sbjct: 303 LDR 305


>gi|149914532|ref|ZP_01903062.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
 gi|149811325|gb|EDM71160.1| D-alanine--D-alanine ligase [Roseobacter sp. AzwK-3b]
          Length = 292

 Score =  215 bits (546), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 137/298 (45%), Positives = 191/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G  CA+AL +AG++V ++D    + L L+ + PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGHECAAALREAGYQVVEVDAGPDLYLQLSEVSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK ++K +  +  +PV  S+L  R  +   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQKTKDIYRAEELPVVHSLLARRDDVRRAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ +++   S P DL         +Q+++E +  G ELT  VMGD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVQDAASAPPDLSDDMP----EQVMVEAFAPGRELTATVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y+ KY+   S HV+PA IP DI+      A  AH+ +GCRG+S
Sbjct: 177 KALTVTDIL--TDGWYDYDAKYTPGGSRHVVPADIPADIFDACMDYALRAHRVLGCRGLS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDEARGLDGLVLLETNTQPGMTPTSLSPEQAKVMGISFPDLCRWMVEDASCNR 292


>gi|146276749|ref|YP_001166908.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
 gi|190359210|sp|A4WQD9|DDL_RHOS5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145554990|gb|ABP69603.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17025]
          Length = 307

 Score =  215 bits (546), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 147/302 (48%), Positives = 199/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSLSSG +C++AL DAG++V+++D    +  VLA ++PD  FN LHG
Sbjct: 12  VAVLMGGTSSEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAEVQPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S++     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVIATPDEVQA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +++ D + P  L           L++E Y+ G ELT  
Sbjct: 132 GHVLPPPYVVKPNCEGSSVGVYIVQADANGPPRLAPDMP----RDLMVETYIPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y+ KY    S HV+PA++P +I      +A  AH+A+GC
Sbjct: 188 VMGDRALAVTDIV--TDGWYDYDAKYRPGGSRHVVPAELPAEITDACLDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D       +  LE N QPGMTP S+ PE AA+ G SF E   WMVEDASC
Sbjct: 246 RGISRSDLRWDESRGAEGLILLETNTQPGMTPTSLSPEQAAHCGLSFPEFCAWMVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 NR 307


>gi|115524126|ref|YP_781037.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
 gi|122296540|sp|Q07PS7|DDL_RHOP5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115518073|gb|ABJ06057.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisA53]
          Length = 308

 Score =  214 bits (545), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 156/303 (51%), Positives = 203/303 (66%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG ACA ALE  GF+V++IDV R +  VL  L+PD A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGNACADALERRGFEVTRIDVARDIATVLDQLRPDSALMMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+ + GVPV   + ++R  +  
Sbjct: 67  HPGEDGSIQGVLETLAIPYSHSGVLASALAMQKDLAKTVMKTAGVPVAEGLTLSRDEIAR 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYVIKP+  GSS+G+ +I +    P   L    W +GD+LL+E+YV G ELTC 
Sbjct: 127 GHVMEPPYVIKPVADGSSVGVYIITEQHQHPPQELFRDDWAYGDKLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+     DV    VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTDVI-EIVPMVRFYDYEAKYSPGASKHVLPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AAYAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTGGLVCLEVNTQPGMTETSLVPELAAYAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|99080527|ref|YP_612681.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
 gi|122984380|sp|Q1GIU7|DDL_SILST RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|99036807|gb|ABF63419.1| D-alanine--D-alanine ligase [Ruegeria sp. TM1040]
          Length = 306

 Score =  214 bits (544), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 143/302 (47%), Positives = 196/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+EREVSLS+G+ CA AL   G++V ++D    +   L  +KPD+AFN LHG
Sbjct: 11  VAMLMGGPSAEREVSLSTGRECARALRGQGYEVVEVDAGPDLVAQLNDIKPDVAFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK    + G+PV  S++  +  + +
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERSKAAYRTAGLPVVDSVIAAKADVMA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+I+PPYV+KP   GSS+GI ++ +  + P  L +        Q+++E Y  G E+T  
Sbjct: 131 RHVIAPPYVVKPNNEGSSVGIYIVHEATNSPPQLSEEMPA----QVMVEAYAPGREMTVT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y YE KY++  S HVLPA+IP +I       A  AHQ +GC
Sbjct: 187 VMGDRALCVTDIL--TDGWYDYEAKYATGGSRHVLPAEIPDEIADLCHDYALRAHQVLGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE A + G +F +L  W+VEDASC
Sbjct: 245 RGISRTDFRWDEARGADGLVLLETNTQPGMTPTSLSPEQAEHVGLTFGQLCAWLVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 ER 306


>gi|291615171|ref|YP_003525328.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
 gi|291585283|gb|ADE12941.1| D-alanine/D-alanine ligase [Sideroxydans lithotrophicus ES-1]
          Length = 309

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 161/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL  +G      D  +     L   K D  F +LHG
Sbjct: 12  VAVLFGGRSAEREVSLKSGAAVLAALLKSGVDAHAFDPAQRDLSELKKEKFDRVFIILHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            +GEDG VQ  LEL++IPYT SG++ASA++MDK R+K V  + G+P+             
Sbjct: 72  RYGEDGTVQGALELMDIPYTGSGVMASAIAMDKWRTKLVWQAAGLPIPEYEALTAPSDWN 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G+  +K    +P+    + +  +   ++ E ++ G E T
Sbjct: 132 AVADHLDLPLFVKPSSEGSSVGVTKVKTVDELPIAY--AEAAKYDKVVIAESFMSGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L V     P ++FY YE KY   ++ ++ P  + ++   E+Q LA LA Q I
Sbjct: 190 ATILNGRALPVI-KIEPANEFYDYEAKYLRDDTRYLCPCGLSVEQEAEMQHLALLAFQLI 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC+G  R DF       K + LEIN  PGMT  S+ P  A  AG SF +L++ ++E A  
Sbjct: 249 GCQGWGRVDF-LRGDDGKFYLLEINTAPGMTDHSLVPMAARQAGISFEQLVVQILEGAGI 307

Query: 299 LR 300
            +
Sbjct: 308 GK 309


>gi|163852363|ref|YP_001640406.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
 gi|226696389|sp|A9VWV8|DDL_METEP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163663968|gb|ABY31335.1| D-alanine--D-alanine ligase [Methylobacterium extorquens PA1]
          Length = 307

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 155/303 (51%), Positives = 212/303 (69%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG ACA ALE  G++V++++V   +  VL  L+PD A N LHG
Sbjct: 5   VAVLMGGWSSEREISLRSGNACAEALEGEGYRVTRVNVGPDIATVLTELRPDAALNALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L+IPYTHSG+LASAL+M K R+K V+ + GV V    +VNR     
Sbjct: 65  PAGEDGTIQGLLEILKIPYTHSGVLASALAMHKERAKTVMRAAGVSVPEGRVVNRHDAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H ++PPYV+KP+  GSS+G+I+++ ++S P  +L S  W +G+++L E YV G ELTC 
Sbjct: 125 SHPLTPPYVVKPIAEGSSMGVIIVRDERSHPPQILASDEWVYGEEVLAETYVAGRELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI     ++Y ++ KY+   S HVLPA + L+IY+ VQ LA  AHQA+GC
Sbjct: 185 VLGDRALGVTEIKPVSGEWYDFDAKYAGGGSIHVLPADLKLNIYQRVQELALTAHQALGC 244

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+D  +D     +  +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 245 RGVSRADLRYDDTPGGTGALVVLEVNTQPGMTQTSLVPEIAAHAGQSFGELVRWMVEDAS 304

Query: 298 CLR 300
             R
Sbjct: 305 LNR 307


>gi|254467284|ref|ZP_05080695.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
 gi|206688192|gb|EDZ48674.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium Y4I]
          Length = 294

 Score =  213 bits (543), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG+ CA+AL   GF+V ++D  R +   LA +KPD+ FN LHG +G
Sbjct: 2   LMGGPSAEREVSLSSGRECAAALRGEGFEVVEVDAGRDLHARLAEVKPDVVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK RSK+V  S G+PV  S L  +  + + H+
Sbjct: 62  EDGCVQGLLEWLGIPYTHSGVLASALAMDKQRSKEVYRSAGLPVVESGLFAKEDVTAGHV 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++PPYV+KP   GSS+GI ++ +  + P  L ++       Q+++E Y  G ELT  V+G
Sbjct: 122 MAPPYVVKPNNEGSSVGIYIVHEAANGPPQLSEAMP----QQVMVETYAPGRELTTTVIG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH+A+GCRG+
Sbjct: 178 DRALTVTDIL--TDGWYDYDAKYKPGGSRHVLPADLPREIHDLCLEYALKAHEALGCRGV 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SR+DF +D       +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC R
Sbjct: 236 SRTDFRWDETRGASGLVLLETNTQPGMTPTSLVPEQAAFCGMSFGQLCAWMVEDASCNR 294


>gi|254418986|ref|ZP_05032710.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
 gi|196185163|gb|EDX80139.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Brevundimonas sp. BAL3]
          Length = 313

 Score =  213 bits (542), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 148/304 (48%), Positives = 201/304 (66%), Gaps = 4/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVLMGG+S+EREVSL+SG+ CA ALE  G +VS++D  R +  VL+ L KPD+  N LH
Sbjct: 10  VAVLMGGLSAEREVSLTSGEQCAQALERQGVRVSRVDAGRDLANVLSGLIKPDVVLNCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK V+ + GV V    L +R  + 
Sbjct: 70  GAWGEDGCVQGVLETLRIPYTHSGVLASALAMDKNRSKAVLKAAGVKVPGGGLYDRHEVA 129

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           S+H+I PPYV+KP   GSS+G+ ++ +  + P+  +    W +G+Q+++E Y+ G EL  
Sbjct: 130 SRHVIEPPYVVKPNAEGSSVGVYLVSEGANRPVAEVGEPGWAYGEQVMVEPYIAGKELAV 189

Query: 180 GVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            V+G A            P   FY YE KY+   S HVLPA +P  +++   R A  AH 
Sbjct: 190 AVIGYADGPRALTVTDITPTKGFYDYEAKYAPGGSVHVLPAVLPPAVFEAALRQAEAAHV 249

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG+SRSDF +D +   +  LE+N QPGMTP S+ PE AA+ G S+ +L+ WMVEDA
Sbjct: 250 AMGCRGVSRSDFRYDDVKDDLVLLEVNTQPGMTPTSLAPEQAAHTGMSYEDLVRWMVEDA 309

Query: 297 SCLR 300
           SC R
Sbjct: 310 SCPR 313


>gi|209884387|ref|YP_002288244.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
 gi|226696390|sp|B6JB38|DDL_OLICO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|209872583|gb|ACI92379.1| D-alanine--D-alanine ligase B [Oligotropha carboxidovorans OM5]
          Length = 308

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 153/303 (50%), Positives = 209/303 (68%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA+ALE  G++V++IDV R +  VL +LKPD+A  +LHG
Sbjct: 7   VAVLMGGWSSEREVSLRSGAACAAALERKGYRVTRIDVQRDIATVLQNLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+L+S+L+M K  +K V+++ GVPV   + + R  +  
Sbjct: 67  KPGEDGTIQGVLETLGIPYSHSGVLSSSLAMRKDLAKTVMATAGVPVAEGLTLTRAEIAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYVIKP+  GSS+G+ ++ +DQ+ P   L    W HG++LL+E+Y+ G ELTC 
Sbjct: 127 AHVMAPPYVIKPVADGSSVGVFIVTEDQAHPPQELFRDDWPHGEELLVEKYIAGRELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   + DV    VP   FY YE KYS   S HVLPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VIKGEASDVI-EIVPLLKFYDYEAKYSKGASKHVLPAPVLPFVYQEVRRLTLAAHGALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF +D     +  +  LE+N QPGMT  S+ PE+A YAG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRYDDRIEGTGGLVCLEVNTQPGMTETSLVPELAGYAGVAFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LDR 308


>gi|78043171|ref|YP_360179.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|123576231|sp|Q3ACF5|DDL_CARHZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77995286|gb|ABB14185.1| D-alanine--D-alanine ligase [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 312

 Score =  213 bits (541), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 106/303 (34%), Positives = 173/303 (57%), Gaps = 12/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSEREVSL +G A   AL   G+ V +ID+DR++   L     D AF  LHG
Sbjct: 3   IGVICGGLSSEREVSLRTGDAIFRALLKKGYNVVKIDMDRNIAETLKKENIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+++IPYT SGILAS+L++DK+ +K+++ + G+P    I  +     +
Sbjct: 63  KYGEDGAIQGLLEIMDIPYTGSGILASSLAIDKIMTKKILKAEGIPTPNYIAFSFDENPN 122

Query: 121 Q--------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P VIK  + GS++GI  +   Q +P  + +        QLL+E+++
Sbjct: 123 FEAISSEILQTLKLPVVIKAPREGSTIGIEFVFSKQELPKAIKKVLEI--DKQLLVEEFI 180

Query: 173 DGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +G+E+T       +  +      V K+ FY YE KY+   S H++P +I  ++ ++    
Sbjct: 181 EGVEVTASVLGNSNPVVLPLIEIVSKTRFYDYEAKYTPGLSEHIIPPRIAPELSQKAIEY 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   ++A+GCRG +R DF+ D    + + LE+N  PGMT  S+FP+ A   G SF +L+ 
Sbjct: 241 ARKTYKALGCRGFARVDFMIDVRKNEAYVLEVNTIPGMTATSLFPDAAKAQGISFEDLVE 300

Query: 291 WMV 293
            ++
Sbjct: 301 KIL 303


>gi|77919793|ref|YP_357608.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
 gi|123573744|sp|Q3A2G9|DDL_PELCD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77545876|gb|ABA89438.1| D-alanine--D-alanine ligase [Pelobacter carbinolicus DSM 2380]
          Length = 305

 Score =  212 bits (540), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 115/300 (38%), Positives = 174/300 (58%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL +GKA + AL   G++V+ ID  R +   L     ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLRTGKAISQALTRCGYEVTDIDAGRDLAQQLEKTGVEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL +IPYT SG+LAS+L+MDK+ +K+++   G+      ++ R     
Sbjct: 71  RFGEDGTVQGLLELADIPYTGSGVLASSLAMDKVATKKMLCYHGIATPGFAVMRRGQKIC 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             L   P V+KP + GS++GI ++  +Q +        ++ H D +L+EQ++ G E+T G
Sbjct: 131 GTLPDYPLVVKPAREGSTIGISIVHDEQEL--AAGLEEAFRHDDLVLVEQFIAGAEVTVG 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+           VPK  FY Y+ KY+   + ++LPA +P  +Y  +Q  A    +AIGC
Sbjct: 189 VLDGQP-LPIIQVVPKGGFYDYQSKYTPGQTEYLLPAPLPETLYGALQDSAVRVFEAIGC 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G +R DF+        + LE+N  PGMT  S+ P+ A   G SF EL+  ++  AS  +
Sbjct: 248 CGAARVDFMVTDTG--FYCLEVNTIPGMTETSLLPKAANAVGMSFDELVERILAGASLRK 305


>gi|300021781|ref|YP_003754392.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523602|gb|ADJ22071.1| D-alanine/D-alanine ligase [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 317

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 146/304 (48%), Positives = 202/304 (66%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ER+VSL+SG A   AL + G++V++IDVDR++   L  + PD+ FN LHG
Sbjct: 15  VAVLKGGLSAERDVSLNSGAAVGEALREEGYRVTEIDVDRNLAAQLEAINPDVCFNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE+L IPYTHSG+LASAL+M K R+K ++   GV V  + LV R     
Sbjct: 75  KFGEDGCVQGVLEMLAIPYTHSGVLASALAMHKERAKDIMKLAGVAVAEAKLVTRREAAE 134

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G++++      P     +S  +    +++E+YV G ELTC 
Sbjct: 135 AHVLPPPYVVKPPTEGSSVGVVIVPPGADRPPS-SIASGGSPDQIVMVERYVPGRELTCA 193

Query: 181 VMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+GD   DV EI       FY YE KY +  S H LPA++  D+Y+ V+ L   AHQA+G
Sbjct: 194 VIGDFVTDVIEIVPLRGLAFYDYESKYGAGGSKHELPAQLLPDVYQSVRSLTLRAHQALG 253

Query: 240 CRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CRG+SR+DF FD     + ++  LE+N QPGMT  S+ PE+A +AG+SF +L+ WMVEDA
Sbjct: 254 CRGVSRADFRFDDTAGGTGELICLEVNTQPGMTGTSLVPELAGHAGWSFGDLVRWMVEDA 313

Query: 297 SCLR 300
           SC R
Sbjct: 314 SCNR 317


>gi|56551730|ref|YP_162569.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241762278|ref|ZP_04760359.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|260752695|ref|YP_003225588.1| D-alanine--D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
 gi|81550526|sp|Q9RNM9|DDL_ZYMMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|5834367|gb|AAD53933.1|AF179611_17 D-alanine:D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|56543304|gb|AAV89458.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ZM4]
 gi|241373181|gb|EER62811.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis ATCC
           10988]
 gi|258552058|gb|ACV75004.1| D-alanine/D-alanine ligase [Zymomonas mobilis subsp. mobilis NCIMB
           11163]
          Length = 321

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 187/300 (62%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL SG+    ALE+AG++V+ +D+DR +   L   KPD+ FN LHG
Sbjct: 7   VVVLMGGWSSEREISLLSGRHVGKALEEAGYRVTLLDMDRDIAFKLREAKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +++L+ I YTHSG+ ASA+++DK  +K++++   +P+    LV R ++ +
Sbjct: 67  TPGEDGSIQGLMDLMAIRYTHSGLTASAIAIDKELTKKILTPENIPMPQGCLVERESLYT 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ +I +  +    +   Q   W +   LL E ++ G ELT
Sbjct: 127 KDPLPRPYVLKPVNEGSSVGVAIIDESFNDGQPIRKDQIDPWKNFKTLLAEPFIKGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             VMGD +        P + FY Y+ KY+   +TH+ PAKIP +I ++   L+  AHQ +
Sbjct: 187 VAVMGDKA-LAVTELCPNNGFYDYKAKYTDGMTTHICPAKIPAEIAEKAMALSLKAHQLL 245

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D  +    +F LE+N QPGMTP+S+ PE A   G  +  L   +VE+A
Sbjct: 246 GCRGPSRSDFRWDDEAGLDGLFLLEVNTQPGMTPLSLVPEQAKQLGIDYVALCRMIVEEA 305


>gi|56696094|ref|YP_166448.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
 gi|81350282|sp|Q5LU57|DDL_SILPO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56677831|gb|AAV94497.1| D-alanine--D-alanine ligase [Ruegeria pomeroyi DSS-3]
          Length = 306

 Score =  212 bits (539), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 143/302 (47%), Positives = 194/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+ CA+AL   GF+V ++D    +   L    PD+ FN LHG
Sbjct: 11  VAVLMGGPSAEREVSLVSGRECAAALRGEGFEVVELDAGSDLCDRLRASAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYT SG+LASAL+MDK RSK+   + G+PV  S L +R  +++
Sbjct: 71  RWGEDGCVQGLLEWLRIPYTSSGVLASALAMDKERSKEAYRAAGLPVAASQLADRAAIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L           L++E+YV G EL+  
Sbjct: 131 AHVMQPPYVVKPYNEGSSVGVYIVTEAANGPPVLAPDLPAT----LMVEEYVPGRELSTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L+VT+I      +Y Y  KYS   S HV+PA +P +I++     A  AH+A+GC
Sbjct: 187 VLGDRALNVTDII--TDGWYDYHAKYSPGGSRHVIPADLPPEIFELCLDYALRAHKALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +F LE N QPGMTP S+ PE A  AG SF +L  WMVEDASC
Sbjct: 245 RGLSRTDFRWDESRGAAGLFLLETNTQPGMTPTSLAPEQALAAGMSFGQLCAWMVEDASC 304

Query: 299 LR 300
            R
Sbjct: 305 DR 306


>gi|87199158|ref|YP_496415.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
 gi|123490034|sp|Q2G992|DDL_NOVAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|87134839|gb|ABD25581.1| D-alanine--D-alanine ligase [Novosphingobium aromaticivorans DSM
           12444]
          Length = 313

 Score =  212 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL SG+  A ALE  G +V++ID+DR V L LA  KPD+ FN LHG
Sbjct: 8   VAVLMGGWSSERPVSLMSGEGVAKALESKGHQVTRIDMDRDVALRLAEAKPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +++++ + YTHSG++ S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGSIQGLMDIMGLTYTHSGLVTSVIAIDKELTKQALVPHGIPMPGGRMVKTADLYK 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +    +       W   DQLL E ++ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGSPISAASKGPWQEFDQLLAEPFIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+GD +  +     PKS FY ++ KY+   + H+ PA+IP +I +  + +A  AH+ +
Sbjct: 188 TAVIGDRA-LLVTELRPKSGFYDFDAKYTEGMTDHICPAEIPDEITEACKDIALRAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  + +L+  ++ +A
Sbjct: 247 GCKGTSRSDFRWDDEQGVEGLFLLEVNTQPGMTPLSLVPEQARALGMDYSDLVEAIIAEA 306


>gi|254476016|ref|ZP_05089402.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
 gi|214030259|gb|EEB71094.1| D-alanine--D-alanine ligase [Ruegeria sp. R11]
          Length = 296

 Score =  212 bits (538), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 142/301 (47%), Positives = 197/301 (65%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLS+G+ CA+AL D G++V+++D    +   LA  +PD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSTGRECAAALRDEGYQVTELDAGPDLAAQLAADRPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L IPYTHSG+LASAL+MDK RSK+   + G+PV  S L  +  + + 
Sbjct: 62  WGEDGCVQGLLEWLAIPYTHSGVLASALAMDKQRSKEAFRAAGLPVVDSGLFAKSDVSAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+GI ++++  + P  L +       D++++E Y  G ELT  V
Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYIVQEAANTPPQLSEDMP----DEVMVETYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L VT+I      +Y ++ KY    S HVLPA +P +I++     A  AH A+GCR
Sbjct: 178 VDGKALTVTDIL--TDGWYDFDAKYKPGGSRHVLPADLPDEIFQLCLDYAVRAHDALGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D    K  +  LE N QPGMTP S+ PE AA+ G SF +L  WMVEDASC 
Sbjct: 236 GVSRTDFRWDESRGKDGLILLETNTQPGMTPTSLAPEQAAHCGMSFGQLCAWMVEDASCG 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|149202200|ref|ZP_01879173.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
 gi|149144298|gb|EDM32329.1| D-alanine--D-alanine ligase [Roseovarius sp. TM1035]
          Length = 296

 Score =  212 bits (538), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 140/301 (46%), Positives = 192/301 (63%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AV+MGG S+ER+VSLSSG+ CA AL +AGF+V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVIMGGPSAERDVSLSSGRECAVALREAGFEVVEVDAAADLCTCLQAIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+L+SAL+MDK R+K    + G+PV  S+L  R  + ++
Sbjct: 62  WGEDGCVQGMLEWLRLPYTHSGVLSSALAMDKERTKAAYRAAGLPVVESVLARRDEVRTR 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++ PPYV+KP   GSS+GI +++   + P  L         + +++E Y  G ELT  V
Sbjct: 122 HVMPPPYVVKPCNEGSSVGIYLVEAGANNPPALSDDMP----EVVMVEAYAPGRELTTTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH  +GCR
Sbjct: 178 MGDRALTVTDIL--TDGWYDYDAKYKPGGSRHVVPAEIPQEIFDACLDYALRAHAVLGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D    +  +  LE N QPGMTP S+ PE A   G +F EL  WMVEDASC 
Sbjct: 236 GVSRTDFRWDAARGRDGLILLETNTQPGMTPTSLAPEQAQAVGITFPELCRWMVEDASCN 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|77462663|ref|YP_352167.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126461556|ref|YP_001042670.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
 gi|123592597|sp|Q3J4L8|DDL_RHOS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359209|sp|A3PHT2|DDL_RHOS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77387081|gb|ABA78266.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides 2.4.1]
 gi|126103220|gb|ABN75898.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides ATCC 17029]
          Length = 307

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 148/302 (49%), Positives = 199/302 (65%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG
Sbjct: 12  VAVLMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + +
Sbjct: 72  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRA 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+G+ ++ +D + P  L           L++E YV G ELT  
Sbjct: 132 RHILPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QDLMVETYVPGRELTVT 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GC
Sbjct: 188 VMGDRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGC 245

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC
Sbjct: 246 RGISRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASC 305

Query: 299 LR 300
            R
Sbjct: 306 SR 307


>gi|119387195|ref|YP_918250.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119377790|gb|ABL72554.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 311

 Score =  211 bits (536), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 135/301 (44%), Positives = 193/301 (64%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLSSG+ CA AL  AG++V ++D  R +   LA   PD+ FN LHG
Sbjct: 16  VVVLMGGPSAEREVSLSSGRECAVALRQAGYEVVELDAGRDLPARLAEHAPDVVFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L   YTHSG+LASAL+MDK R+K+++   G+PV  S++ +   + +
Sbjct: 76  RWGEDGCVQGLLEWLGWRYTHSGVLASALAMDKSRAKEILRLAGLPVLDSLIADADEVRA 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYV+KP   GSS+G+ ++ +  + P  L          ++++E Y  G ELT  
Sbjct: 136 RHVMAPPYVVKPNDEGSSVGVYIVHEAANGPPQLSDKMPA----RVMVETYAPGRELTVA 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VTEI      +Y Y+ KY+   S HV+PA IP +I    +  A  AH+A+GC
Sbjct: 192 VLGDRALGVTEIV--TEGWYDYDAKYTPGGSRHVIPADIPEEIAAACRDHAVQAHRALGC 249

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG++RSDF +D       +  LE+N QPGMTP S+ PE AA++G  F  L  W+VE+A C
Sbjct: 250 RGLTRSDFRWDESRGLDGLIILEVNTQPGMTPTSLAPEQAAHSGMDFPALCRWIVEEALC 309

Query: 299 L 299
            
Sbjct: 310 R 310


>gi|310814886|ref|YP_003962850.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
 gi|308753621|gb|ADO41550.1| D-alanine--D-alanine ligase [Ketogulonicigenium vulgare Y25]
          Length = 292

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 147/298 (49%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ CA AL +AG+ V ++D D ++   LAH+KPD+ FN LHG +GE
Sbjct: 1   MGGFSAEREVSLSSGRECAKALVEAGYDVVEVDADATLVDRLAHVKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE L IPYTHSG+LASAL+MDK R+K    + G+PV PS+L  R  +  +H++
Sbjct: 61  DGCVQGILEWLRIPYTHSGVLASALAMDKQRTKSTYQAAGLPVVPSLLAARDEVSQRHMM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++    + P  L         D +++E Y  G ELT  V+GD
Sbjct: 121 DAPYVVKPANEGSSVGVYIVHAGANRPPQLSPEMP----DVVMVEAYAAGRELTTAVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KYS   S H +PA IP+ IY      A  AH+A+GCRG+S
Sbjct: 177 RALTVTDII--TDGWYDYNAKYSVGGSRHEIPANIPVQIYDACMDYALRAHRALGCRGLS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+AG SF EL  W+VEDASC R
Sbjct: 235 RTDFRWDETRGLDGLILLETNTQPGMTPTSLAPEQAAWAGISFPELCRWLVEDASCGR 292


>gi|190359233|sp|Q163J4|DDL_ROSDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 319

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 24  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 84  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L +        ++++E +  G ELT  
Sbjct: 144 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTT 199

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 200 VVGDRALTVTDIV--TDGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 257

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 258 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 317

Query: 299 LR 300
            R
Sbjct: 318 DR 319


>gi|110680528|ref|YP_683535.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
 gi|109456644|gb|ABG32849.1| D-alanine--D-alanine ligase [Roseobacter denitrificans OCh 114]
          Length = 332

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 187/302 (61%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSLSSG+ACA+AL D G+ V +ID    +G  L    PD   N LHG
Sbjct: 37  VAVLLGGPSVEREVSLSSGQACAAALRDEGYDVVEIDAGHDLGARLIDAGPDAVLNCLHG 96

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + +PY+HSG+LASAL+MDK RSK    + G+PV PS++     +  
Sbjct: 97  RWGEDGCVQGLLEWMGVPYSHSGVLASALAMDKQRSKDAFVAAGLPVVPSVIAKAADVRM 156

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P  L +        ++++E +  G ELT  
Sbjct: 157 GHVMQPPYVVKPNNEGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTT 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HV+PA IP DI+      A  AH A+GC
Sbjct: 213 VVGDRALTVTDIV--TDGWYDYDAKYKPGGSHHVVPADIPADIFDLCMDYALRAHHALGC 270

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMT  S+ PE AA  G +F +L  WMVEDASC
Sbjct: 271 RGVSRTDFRWDETKGAAGLILLETNTQPGMTATSLTPEQAAVTGMTFGKLCAWMVEDASC 330

Query: 299 LR 300
            R
Sbjct: 331 DR 332


>gi|294012774|ref|YP_003546234.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
 gi|292676104|dbj|BAI97622.1| D-alanine-D-alanine ligase [Sphingobium japonicum UT26S]
          Length = 321

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 124/300 (41%), Positives = 182/300 (60%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+   YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGFTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSESLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +    + +     W H ++LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFEELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V       +     PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPADIPPEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDEQGIEGLFLLEVNTQPGMTPLSLVPEQAARLGIDYAELVERIVEDA 306


>gi|126726626|ref|ZP_01742466.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
 gi|126703955|gb|EBA03048.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2150]
          Length = 304

 Score =  210 bits (534), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 195/302 (64%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLSSGK CA+AL  AGF   ++D   ++   L  + PD+AFN LHG
Sbjct: 9   IVVLMGGPSAEREVSLSSGKECAAALVRAGFDTVELDAGPNLVEDLKRIAPDVAFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE L+IPYTHSG+LASAL+MDK ++K    S G+PV  S+L  +  ++ 
Sbjct: 69  RWGEDGCVQGILEWLQIPYTHSGVLASALAMDKEKTKAAFRSVGLPVMESVLAPKAEIEG 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP+  GSS+G+ ++++  + P  L         + L++E Y  G ELT  
Sbjct: 129 SHVMAPPYVVKPVNEGSSVGVYLVQEGANSPPRLAPEMP----EILMVETYAPGRELTTT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY +  S HVLPA +P +I+      A  AH  +GC
Sbjct: 185 VIGDRALTVTDIL--TDGWYDYDAKYVAGGSRHVLPADVPSEIFDTCMEYAIRAHNVLGC 242

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE A + G SF EL+ WM+EDA+C
Sbjct: 243 RGVSRTDFRWDETRGLDGLILLETNTQPGMTPTSLSPEQAQHVGISFEELVTWMIEDATC 302

Query: 299 LR 300
            R
Sbjct: 303 NR 304


>gi|89067822|ref|ZP_01155266.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
 gi|89046420|gb|EAR52476.1| D-alanine--D-alanine ligase [Oceanicola granulosus HTCC2516]
          Length = 293

 Score =  210 bits (533), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 133/298 (44%), Positives = 181/298 (60%), Gaps = 7/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ C  AL +AGF   +ID    +   LA  KPD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRGCVDALREAGFSTIEIDAGPDLAERLAEAKPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L +PYTHSG+LASAL+MDK R+K    + G+PV  S L  R  +++ H++
Sbjct: 61  DGCVQGLLEWLRLPYTHSGVLASALAMDKERAKDAFRAEGLPVMESRLATRDEVEAGHVL 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  L         +++++E +  G ELT  VMG+
Sbjct: 121 PPPYVVKPYNEGSSVGVYIVAEGANAPPKLGAEMP----ERVMVEAFAPGRELTTMVMGE 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +     Y Y+ KY    S H +PA IP +I    +  A  AH+ IGCRG++
Sbjct: 177 RGALGVTDIITDGW-YDYDAKYKEGGSRHEVPAAIPAEIGAACRDYAERAHRVIGCRGVT 235

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LEIN QPGMTP S+ PE AA+AG  F EL  W+VEDASC R
Sbjct: 236 RTDFRWDESRGLDGLVLLEINTQPGMTPTSLVPEQAAWAGIGFPELCTWLVEDASCDR 293


>gi|307294492|ref|ZP_07574334.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
 gi|306878966|gb|EFN10184.1| D-alanine/D-alanine ligase [Sphingobium chlorophenolicum L-1]
          Length = 316

 Score =  209 bits (532), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 125/300 (41%), Positives = 183/300 (61%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G +V++ID+DR V L L+  +PD+ FN LHG
Sbjct: 8   VAVLMGGWSAERLVSLSSGEGVAKALESRGHRVTRIDMDRDVALRLSETRPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++  
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHIVPSASLFE 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++ +  +    + +     W H D+LL E Y+ G ELT
Sbjct: 128 GDPLPRPYVVKPVNEGSSVGVAIVTEGGNYGSPIGRDVEGPWLHFDELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V       +     PKS FY ++ KY+   + HV PA IP +I +  + +A  AHQ +
Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPAGIPQEIGEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SRSDF +D       +F LE+N QPGMTP+S+ PE AA  G  + EL+  +VEDA
Sbjct: 247 GCKGASRSDFRWDDTQGVEGLFLLEVNTQPGMTPLSLVPEQAAKLGIDYAELVERIVEDA 306


>gi|157803467|ref|YP_001492016.1| D-alanine--D-alanine ligase [Rickettsia canadensis str. McKiel]
 gi|189083046|sp|A8EXZ8|DDL_RICCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157784730|gb|ABV73231.1| D-alanylalanine synthetase [Rickettsia canadensis str. McKiel]
          Length = 354

 Score =  209 bits (531), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 119/297 (40%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S K  + AL   G+KV+ ID+   +   L  +KPD+ FN LHG
Sbjct: 58  IALVAGGMSAEREVSLVSSKGVSKALIALGYKVTFIDMGADIAFKLQEIKPDIVFNCLHG 117

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 118 TYGEDGCLSGLLNIMRIPYTHSGVLSSALAFDKIYSRSWFLTNNINMAESIVVNKSDNIK 177

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKP+  GSS+GI VI ++         +  + +GDQ++IE+Y+ G EL   
Sbjct: 178 IEPMKRPYVIKPITQGSSIGIEVIFEEDDFNFA---NYDFPYGDQVIIEKYIKGRELQVA 234

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA IP ++Y ++   +   ++ + C
Sbjct: 235 VLNGKALGVLEIKLLKNRFYDYETKYTEGFAEHLCPAPIPTNLYDKLLIESEKIYKTMNC 294

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +FL +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 295 KGPARVEFLLEDQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKAAS 351


>gi|212712759|ref|ZP_03320887.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
 gi|212684675|gb|EEB44203.1| hypothetical protein PROVALCAL_03856 [Providencia alcalifaciens DSM
           30120]
          Length = 306

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 114/306 (37%), Positives = 164/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQDFPVVTLKEAGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR    +
Sbjct: 65  RGGEDGTIQGMLEFMGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +     +P  +    ++   D LLIE++
Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDELPEAI--ELAFQFDDTLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L       P   FY YE KY S  + +  P+ +  D+  ++  +A
Sbjct: 183 LSGPEYTVAVLGDEVLPSI-RIQPPGIFYDYEAKYLSDETQYFCPSGLTNDLEAKLADMA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 MKAYQAVGCRGWGRVDVMQD-SDGEFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300

Query: 292 MVEDAS 297
           ++E AS
Sbjct: 301 ILELAS 306


>gi|260434243|ref|ZP_05788214.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260418071|gb|EEX11330.1| D-alanine--D-alanine ligase B [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 296

 Score =  209 bits (531), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 143/301 (47%), Positives = 194/301 (64%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG S+EREVSLSSG+ CA+AL   G +V ++D    +   L  +KPD+ FN LHG 
Sbjct: 2   AVLMGGPSAEREVSLSSGRECAAALVGEGIEVVELDAGPDLCARLQDIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE L +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V +  + + 
Sbjct: 62  WGEDGCVQGLLEWLRMPYTHSGVLASALAMDKQRSKEVFRAAGLPVADSVIVPKSDVMAG 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H++  PYV+KP   GSS+GI ++ +  + P  L         +Q+++EQYV G ELT  V
Sbjct: 122 HVMPAPYVVKPNNEGSSVGIYLVFEGSNGPPQLSDDMP----EQVMVEQYVAGRELTVTV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MGD +  +T   +    +Y Y+ KY    S HVLPA IP  I+      A  AHQ +GCR
Sbjct: 178 MGDRA--LTVTEILTDGWYDYDAKYKPGGSRHVLPADIPPRIFDLCMDYALRAHQVLGCR 235

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+D+ +D    +  +F LE N QPGMTP S+ PE AA+ G +F +L  WMVEDASC 
Sbjct: 236 GVSRTDYRWDEARGEEGLFLLETNTQPGMTPTSLVPEQAAHLGMTFGQLCAWMVEDASCD 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|148259087|ref|YP_001233214.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
 gi|190359105|sp|A5FUL3|DDL_ACICJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146400768|gb|ABQ29295.1| D-alanine--D-alanine ligase [Acidiphilium cryptum JF-5]
          Length = 301

 Score =  208 bits (530), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 125/301 (41%), Positives = 185/301 (61%), Gaps = 6/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L P  D  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFAAAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+ ++    HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADIARAW--RHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V       +    +    FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSV--LEDRALAVTEIRAEGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299

Query: 299 L 299
            
Sbjct: 300 R 300


>gi|260892987|ref|YP_003239084.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
 gi|260865128|gb|ACX52234.1| D-alanine/D-alanine ligase [Ammonifex degensii KC4]
          Length = 308

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 177/304 (58%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A   AL++ G++  +IDV   + L L+ +KPD+ F  LHG
Sbjct: 3   VAVLCGGNSAEREVSLRSGEAVYRALQERGWEAVKIDVGPDIALRLSEVKPDVVFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE++ +PYT  GILASAL+M+K+ +K+ + S  +P    I +++     
Sbjct: 63  KGGEDGSIQGLLEVMGLPYTGPGILASALAMNKIATKRYLRSASLPTPDFITLDKEETHD 122

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + L         P V+K    GSSLG+ ++++++ +   L  + ++ +   +L+E++++G
Sbjct: 123 EWLQRVKEFRPFPVVVKAPTQGSSLGMNIVRREEELLPAL--AEAFRYDPVVLVEEFIEG 180

Query: 175 IELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +E+T          +      V     Y YE KY+   S H++P ++P    ++V+ LA 
Sbjct: 181 VEVTAAVLGNRKPVVLPLIEIVADKGVYDYEAKYTPGKSQHIIPPRLPEPWQEKVKELAL 240

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             ++ + CRG SR DF+ D      + LE+N  PG+T VS+FP+ A  AG SF EL+  +
Sbjct: 241 ATYRWLDCRGFSRIDFMVD-HKGNPYILEVNTIPGLTEVSLFPDAARAAGISFGELVERL 299

Query: 293 VEDA 296
           +  A
Sbjct: 300 IYLA 303


>gi|255261595|ref|ZP_05340937.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
 gi|255103930|gb|EET46604.1| D-alanine--D-alanine ligase B [Thalassiobium sp. R2A62]
          Length = 306

 Score =  208 bits (529), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 138/302 (45%), Positives = 191/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S+EREVSLSSG  CA+ L + G++V ++D    + + LA  +PD+ FN LHG
Sbjct: 11  IVVIKGGPSAEREVSLSSGFECATGLRENGYEVIEVDAGHDLFVHLAEHQPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ ILE ++IPYTHSG+LASAL+MDK RSKQV    G+PV  S LV++     
Sbjct: 71  RWGEDGCVQGILEWMQIPYTHSGVLASALAMDKQRSKQVFVEAGLPVVESRLVSKEAAQV 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYVIKP   GSS+G+ +++   + P  L         D++++E +  G ELT  
Sbjct: 131 SHVLDVPYVIKPNNEGSSVGVYLVEDGANGPPTLGDEMP----DEVMVEAFAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA IP +I+      A  AH A+GC
Sbjct: 187 VLGDRALTVTDII--TDGWYDYDAKYVEGGSRHVLPADIPSEIHDACLDYALRAHVALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG +R+DF +D       +  LE N QPGMTP S+ PE AA+ G SF +L+ W++EDA+C
Sbjct: 245 RGATRTDFRWDEARGIDGLILLETNTQPGMTPTSLVPEQAAHVGISFPDLMRWIIEDATC 304

Query: 299 LR 300
            R
Sbjct: 305 NR 306


>gi|67459427|ref|YP_247051.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
 gi|75536158|sp|Q4UKP1|DDL_RICFE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|67004960|gb|AAY61886.1| D-alanine--D-alanine ligase [Rickettsia felis URRWXCal2]
          Length = 321

 Score =  208 bits (529), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSEGVSKALIELGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMAESIIVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI ++           ++ +G Q++IEQY+ G EL   
Sbjct: 145 SDPVKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYNFPYGYQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTNLYEKLLVESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|326402238|ref|YP_004282319.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
 gi|325049099|dbj|BAJ79437.1| D-alanine--D-alanine ligase [Acidiphilium multivorum AIU301]
          Length = 301

 Score =  208 bits (528), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 126/301 (41%), Positives = 185/301 (61%), Gaps = 6/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           +AVL+GGIS EREVSL+SG+  A+AL  AG+ V +I+V   +G V+A L P  D  FN L
Sbjct: 4   VAVLLGGISEEREVSLASGRQVAAALRKAGYDVFEIEVGADLGAVIAALTPAPDAVFNAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ + IPYTHSG+ AS+++MDK  +K V +S G+P+    +V    +
Sbjct: 64  HGRFGEDGTIQGVLDYMGIPYTHSGVRASSMAMDKGAAKAVFASAGLPLAQHRIVPLDEL 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  PYVIKP+  GSS+G+ ++++  +   D+ ++    HG   + E+YV G ELT
Sbjct: 124 AEADPLPRPYVIKPVNEGSSVGVFILREGDNRRADIARAW--RHGSVAMTEEYVPGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V       +    +    FY Y  KY++  S H +PA +P  +    + +A  AH+A+
Sbjct: 182 VSV--LEDRALAVTEIRAEGFYDYTAKYAAGASRHEIPADVPPSVSARARDVAVAAHRAL 239

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GCRG +RSDF +D  + ++  LE+N QPGMTP S+ PE AA+ G  F  L  WMVE+A+C
Sbjct: 240 GCRGATRSDFRYDDETDRLVLLEVNTQPGMTPTSLLPEQAAHCGIDFPALCAWMVENAAC 299

Query: 299 L 299
            
Sbjct: 300 R 300


>gi|298507094|gb|ADI85817.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens KN400]
          Length = 316

 Score =  207 bits (526), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 111/300 (37%), Positives = 182/300 (60%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A  +AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLNALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ V P   +       
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTVAPYRVVRRGEAVD 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ ++K  + +P  L   +++ + D +L+E+++ G E+ 
Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPYAL--ETAFRYDDDILVERFIKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++      VP ++FY +E KY++  + H+ P  +P ++Y+ +      AH+A+
Sbjct: 189 IGILDDRAMGAI-EIVPVNEFYDFEAKYTAGKAEHICPPVLPAELYRRLLAEGETAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297
           GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+  ++  A+
Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISAA 306


>gi|90424792|ref|YP_533162.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
 gi|122475818|sp|Q211U3|DDL_RHOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90106806|gb|ABD88843.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB18]
          Length = 308

 Score =  207 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 153/303 (50%), Positives = 207/303 (68%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SGKACA ALE  G++V+++DV R++G VL  LKPD+A  +LHG
Sbjct: 7   VAVLLGGWSSEREVSLRSGKACADALERCGYQVTRVDVQRNIGTVLDQLKPDVALVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPY+HSG+LASAL+M K  +K V+++ GVPV   + ++R  +  
Sbjct: 67  RPGEDGTIQGVLETLGIPYSHSGVLASALAMQKDLAKTVMATAGVPVAEGLTLSRAEVAK 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYVIKP+  GSS+G+ ++ +    P   L    W HG+QLL+E+YV G ELTC 
Sbjct: 127 RHVMAPPYVIKPVADGSSVGVFMVTEAHEHPPQELFRDDWPHGEQLLVEKYVAGKELTCA 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+      V    V  + FY YE KYS   S H+LPA +   +Y+EV+RL   AH A+GC
Sbjct: 187 VVKGEPTGVI-EIVQTNKFYDYEAKYSPGGSNHILPASLLPFVYQEVRRLTLAAHVALGC 245

Query: 241 RGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SR+DF FD     +  +  LE+N QPGMT  S+ PE+AA AG +F EL+ WMVEDAS
Sbjct: 246 RGVSRADFRFDDRIEGTAGLICLEVNTQPGMTETSLVPELAADAGITFDELVQWMVEDAS 305

Query: 298 CLR 300
             R
Sbjct: 306 LGR 308


>gi|104783451|ref|YP_609949.1| D-alanine--D-alanine ligase [Pseudomonas entomophila L48]
 gi|122401969|sp|Q1I5C0|DDL_PSEE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|95112438|emb|CAK17165.1| D-alanine-D-alanine ligase B [Pseudomonas entomophila L48]
          Length = 318

 Score =  207 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALTSAGVDVVAIDVGDDLLARLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     ++       
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEQDCV 139

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  +  +Q +        +  +  Q+L+EQ++ G E T
Sbjct: 140 AASAELGFPLIVKPAHEGSSIGMAKVNSEQELVAA--WKDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|84516385|ref|ZP_01003744.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
 gi|84509421|gb|EAQ05879.1| D-alanine--D-alanine ligase [Loktanella vestfoldensis SKA53]
          Length = 330

 Score =  207 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 189/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSLS+G+ CA+AL  A   V ++D    +   L  + PD  FN LHG
Sbjct: 35  VVVLMGGPSAEREVSLSTGRECAAALRAAECDVIEVDAGPDLATRLTQIAPDAVFNALHG 94

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSGILASAL++DK R+K +  + G+PV  SIL +   + +
Sbjct: 95  RWGEDGAVQGLLEWLRIPYTHSGILASALTLDKERTKDIYRAVGLPVVDSILADADDVRA 154

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYV+KP   GSS+GI +++   + P  L          ++++E Y  G ELT  
Sbjct: 155 RHVMPPPYVVKPYNEGSSVGIYIVQDAANGPPQLSADMPA----RVMVETYAPGRELTTT 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD +L VT+I      +Y Y  KY+   S HV+PA+IP  I+      A  AH+A+GC
Sbjct: 211 VMGDRALTVTDII--TDGWYDYHAKYAPGGSRHVVPAEIPAQIFDACMDYALRAHRALGC 268

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +D       +  LE N QPGMTP S+ PE AA  G SF +L  W+VEDASC
Sbjct: 269 RGISRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQAAKVGISFPQLCRWLVEDASC 328

Query: 299 LR 300
            R
Sbjct: 329 DR 330


>gi|39998157|ref|NP_954108.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
 gi|81701145|sp|Q748D8|DDL_GEOSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39985103|gb|AAR36458.1| D-alanine--D-alanine ligase [Geobacter sulfurreducens PCA]
          Length = 316

 Score =  207 bits (525), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 111/299 (37%), Positives = 181/299 (60%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL+SG A   AL+  G+    +DV R +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLASGGAVLKALQSRGYDAVPVDVGRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +K+V ++ G+ + P  +V R     
Sbjct: 71  RYGEDGTVQGLLELMGIPYTGSGVLASALAMNKIVAKEVFAARGLTIAPYRVVRRGETVD 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ ++K  + +P  L    ++ + D +L+E+++ G E+ 
Sbjct: 131 PVAEGFGYPVVVKPSQEGSSVGVSIVKSPEELPSAL--ELAFRYDDDILVERFIKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++      VP ++FY +E KY++  + H+ P  +P ++++ +      AH+A+
Sbjct: 189 IGILDDRAMGAI-EIVPVNEFYDFEAKYTAGKAEHICPPVLPAELHRRLLAEGEAAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDA 296
           GC G SR DFL      + + LE+N  PGMT +S+ PE+A   +G  F +L+  ++  A
Sbjct: 248 GCSGYSRVDFLVTE-GGECYLLEVNTLPGMTALSLLPEIALKESGIGFEDLVERILISA 305


>gi|91205776|ref|YP_538131.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
 gi|122425436|sp|Q1RHX2|DDL_RICBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91069320|gb|ABE05042.1| D-alanine--D-alanine ligase [Rickettsia bellii RML369-C]
          Length = 321

 Score =  207 bits (525), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 185/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADITVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R +F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARVEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|170720132|ref|YP_001747820.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169758135|gb|ACA71451.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 318

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIEALSSAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASEEDCV 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +  ++ +        +  +  Q+L+EQ++ G E T
Sbjct: 140 VAGTELGFPLIVKPAHEGSSIGMAKVNSERELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|89055244|ref|YP_510695.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
 gi|122498273|sp|Q28NP2|DDL_JANSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|88864793|gb|ABD55670.1| D-alanine--D-alanine ligase [Jannaschia sp. CCS1]
          Length = 316

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 188/310 (60%), Gaps = 14/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAF 55
           + VLMGG S+EREVSLS+G+ CA AL   GF V ++D         +   L  ++PD+ F
Sbjct: 11  VVVLMGGPSAEREVSLSTGRGCAEALRGEGFDVIEVDPGVTHAGAELCARLQEIQPDVVF 70

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG +GEDG VQ +LE + +PYTHSG+L+SAL+MDK R+K  + + G+PV  SI+  +
Sbjct: 71  NALHGRWGEDGCVQGLLEWMRLPYTHSGVLSSALAMDKTRAKTALKAHGLPVVDSIIAPK 130

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             + + H+++ PYV+KP   GSS+G+ ++ +  + P  L         D++++E Y  G 
Sbjct: 131 EAVVAAHVMATPYVVKPNNEGSSVGVYLVNEAANGPPHLSDDMP----DEVMVETYAPGR 186

Query: 176 ELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+GDA  D   + V       +Y Y+ KY    S HV+PA+IP +I+     +A 
Sbjct: 187 ELTVSVLGDAPGDPGALTVTDILTDGWYDYDAKYKPGGSRHVVPAQIPQEIWDACMDMAV 246

Query: 233 LAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            AH  +GC+G+SR+D+ +D       +  LE+N QPGMTP S+ PE     G SF +L  
Sbjct: 247 RAHTILGCKGVSRTDYRWDEARGLDGLIILEVNTQPGMTPTSLTPEQGEAVGMSFGKLCR 306

Query: 291 WMVEDASCLR 300
           W+VEDA+C R
Sbjct: 307 WLVEDATCDR 316


>gi|197105779|ref|YP_002131156.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
 gi|196479199|gb|ACG78727.1| D-alanine--D-alanine ligase B [Phenylobacterium zucineum HLK1]
          Length = 325

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 138/296 (46%), Positives = 200/296 (67%), Gaps = 1/296 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+SSEREVSL SG+ CA ALE  G KVS+ID  R +  VL+ LKPD+ FN LHG
Sbjct: 10  VAVLMGGLSSEREVSLVSGRECADALERLGAKVSRIDAGRDLAQVLSALKPDVCFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK ++K V+++ GVPV    L NR+ +  
Sbjct: 70  AWGEDGCVQGVLETLAIPYTHSGVLASALAMDKAKAKAVLAAAGVPVPGGGLYNRYDVAR 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H+++PPYV+K    GSS+G+ +++   + P   +   SW +G+Q+++E ++ G+EL  G
Sbjct: 130 EHVMAPPYVVKANAEGSSVGVFIVRDRANRPPQEILEPSWTYGEQVMVEPFIRGMELAVG 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM   +       + + +FY YE KY+   S H++PA++P    ++ +  +  AH A+GC
Sbjct: 190 VMDGKA-MEVTEILTEREFYDYEAKYAEGGSKHIVPARMPAHALEKAKEYSERAHAALGC 248

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG++RSD  +D ++  +  LE+N QPGMTP S+ PE AA  G  F  L+LW+ EDA
Sbjct: 249 RGVTRSDLRYDDINDILVLLEVNTQPGMTPTSLVPEQAAAQGVDFDRLVLWITEDA 304


>gi|325275004|ref|ZP_08141000.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
 gi|324099861|gb|EGB97711.1| D-alanine--D-alanine ligase [Pseudomonas sp. TJI-51]
          Length = 318

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L + K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTSAGVDVVAIDVGDDLLDRLQNEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   + +        +  +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAEELIAA--WQDAAQYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  A+
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAV 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|304321499|ref|YP_003855142.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
 gi|303300401|gb|ADM10000.1| D-alanylalanine synthetase [Parvularcula bermudensis HTCC2503]
          Length = 311

 Score =  206 bits (524), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/306 (45%), Positives = 189/306 (61%), Gaps = 7/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFN 56
           + VL GG  SERE+SL SG   A AL D G+ V +IDV R +  VL      L PD  FN
Sbjct: 7   IVVLKGGWCSEREISLISGATAADALRDEGYSVEEIDVGRDLATVLPASFDRLGPDAVFN 66

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG FGEDG VQ +LE+L IPYTHSG+L+SAL M+K R+K V++  G+ V     +   
Sbjct: 67  ALHGPFGEDGRVQGLLEILNIPYTHSGVLSSALCMNKPRAKMVLAQAGLKVPEGRTLPLN 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++  +H ++ PYV+KP+  GSS G+ ++  +Q +        +   G + L+E ++ G E
Sbjct: 127 SLTGRHPMAAPYVLKPIGDGSSFGVNIVMSEQEVAPKTEDLDADLFGTEALVETFIPGRE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT  V+G  +L      VPK+ FY +E KY+   STHVLPA IP ++   V+  +  A Q
Sbjct: 187 LTVSVLGAVAL-GVTEIVPKNTFYDFESKYAEGGSTHVLPADIPEEVADAVKAQSLKAVQ 245

Query: 237 AIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+GCRG+SR DF +D  S    +F LE+N QPGMTP S+ PE AA AG  F  L+ WM+E
Sbjct: 246 ALGCRGLSRVDFRWDDRSGVNGLFILEVNTQPGMTPTSLSPEQAAAAGIDFGALVRWMIE 305

Query: 295 DASCLR 300
           DASCLR
Sbjct: 306 DASCLR 311


>gi|260427103|ref|ZP_05781082.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
 gi|260421595|gb|EEX14846.1| D-alanine--D-alanine ligase [Citreicella sp. SE45]
          Length = 306

 Score =  206 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 140/302 (46%), Positives = 192/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSLSSG+ CA+AL   GF+V+++D    +   L  L PD+ FN LHG
Sbjct: 11  VAVLLGGPSAEREVSLSSGRECAAALRAEGFQVTEVDAGPDLAQQLQALAPDVVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYTHSG+LASAL+MDK RSKQV    G+PV  S+L ++  +++
Sbjct: 71  RWGEDGCVQGLLEWIGIPYTHSGVLASALAMDKERSKQVYRDAGLPVVESVLASKDEIEA 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H+++PPYV+KP   GSS+G+ ++    + P  L         + L++E Y  G ELT  
Sbjct: 131 AHVMAPPYVVKPYNEGSSVGVYLVMDGANTPPRLSPEMP----ETLMVETYAPGRELTTT 186

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L VT+I      +Y Y+ KY    S HVLPA +P +++      A  AH+A+GC
Sbjct: 187 VVGDRALTVTDIL--TDGWYDYDAKYKDGGSRHVLPAAVPQEVFDACLDYALRAHRALGC 244

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE     G SF  L  WMVEDA+C
Sbjct: 245 RGVSRTDFRWDESRGLDGLILLETNTQPGMTPTSLAPEQGQSVGISFGALCRWMVEDATC 304

Query: 299 LR 300
            R
Sbjct: 305 NR 306


>gi|86137674|ref|ZP_01056251.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
 gi|85826009|gb|EAQ46207.1| D-alanine--D-alanine ligase [Roseobacter sp. MED193]
          Length = 296

 Score =  206 bits (523), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 136/301 (45%), Positives = 193/301 (64%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL+GG S+EREVSLSSG+ CA+AL   G++V ++D    + + L  +KPD+ FN LHG 
Sbjct: 2   AVLLGGPSAEREVSLSSGRECAAALRGEGYEVVELDAGPDLYVQLTAIKPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG VQ +LE + +PYTHSG+LASAL+MDK RSK V    G+P+  S L ++  + + 
Sbjct: 62  WGEDGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKMVFHEAGLPIMESGLYDKDAVMAD 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+GI ++ +  + P  L          ++L+E +  G EL+  V
Sbjct: 122 HVMAPPYVVKPNNEGSSVGIYLVHEAANGPPQLSPEMP----QEVLVEAFAPGRELSVSV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD +L VT+I      +Y Y+ KY    S HV+PA+IP++I       A  AH+A+GCR
Sbjct: 178 LGDRALAVTDIL--TDGWYDYDAKYKPGGSRHVIPAEIPVEIRDLCLDYALRAHRALGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+D  +D       +  LE N QPGMTP S+ PE AA+ G SF  L  W+VE+ASC 
Sbjct: 236 GLSRTDIRWDESKGADGLILLETNNQPGMTPTSLAPEQAAHCGLSFGALCAWLVEEASCG 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|238910316|ref|ZP_04654153.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 301

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 119/298 (39%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S ER++S+ +G+ACA+AL+DAG+    IDVDR++   L  + PD+ FN LHG +
Sbjct: 6   VLCGGFSKERDISMVTGRACAAALKDAGYDAYIIDVDRTLPEKLRQINPDVCFNALHGPY 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG VQ +L ++ IPYTHSG+ AS+++MDK+++K +    G+ +    L++        
Sbjct: 66  GEDGSVQGLLNIMGIPYTHSGVGASSIAMDKIKTKAIACQHGIHIAEDQLIDYA-TYKSM 124

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  PYV+KP+  GSS+   +         + L   +W +    ++E+Y+ G ELT  V 
Sbjct: 125 EIPFPYVLKPVNDGSSIATYIFNTP---DAEKLSEQAWIYNTHAMMERYIKGRELTVTVF 181

Query: 183 GDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
            +  + VTEI       FY++  KY +  S H LPA IP   +      A   H  +GCR
Sbjct: 182 MNKPVTVTEIIPSTDHQFYNFHAKYDTGGSLHSLPADIPDKAFNICMENALAMHILLGCR 241

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           GISRSDF+ +  +  +F+LEIN QPGMTP S+ PE  A+AG SF +L+  +V++A+  
Sbjct: 242 GISRSDFILEENTGNIFFLEINTQPGMTPTSLVPEQLAWAGISFTQLVSLLVDEATID 299


>gi|16126782|ref|NP_421346.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|221235562|ref|YP_002517999.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
 gi|22095565|sp|Q9A5A9|DDL_CAUCR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13424106|gb|AAK24514.1| D-alanine--D-alanine ligase B [Caulobacter crescentus CB15]
 gi|220964735|gb|ACL96091.1| D-alanine--D-alanine ligase [Caulobacter crescentus NA1000]
          Length = 324

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 145/299 (48%), Positives = 200/299 (66%), Gaps = 3/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG ACA ALE  G KVS+ID    V  VLA  KPD+ FN LHG
Sbjct: 16  IAVLLGGPSSERKVSLVSGAACAEALERLGAKVSRIDPGPDVAQVLAATKPDMVFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 76  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVTVPGGGLFNRHDVAR 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ +IK+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 136 DHVLQPPYVVKPNAEGSSVGVFIIKEGANRPPEEVGAPSWTFGEEVMVEPYIQGMELAVA 195

Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+++             + FY YE KYS   S HVLPA IP  +     R+A LAH A
Sbjct: 196 VLGESNGPRALAVTDIRASTGFYDYEAKYSEGGSIHVLPAPIPNAVRDRAMRMAELAHTA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG++RSDF +D ++  +  LE+N QPGMTP S+ PE A + G  F +L+LW+VEDA
Sbjct: 256 LGCRGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLAPEQADHVGIPFDQLVLWIVEDA 314


>gi|157825461|ref|YP_001493181.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
 gi|190359211|sp|A8GMP8|DDL_RICAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157799419|gb|ABV74673.1| D-alanine--D-alanine ligase [Rickettsia akari str. Hartford]
          Length = 320

 Score =  206 bits (523), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 111/297 (37%), Positives = 184/297 (61%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL   G+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 24  IALVAGGMSAEREVSLVSSEGVQQALIALGYKVTFIDMGADIAVKLQEIKPDIVFNCLHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S     +  +    SI+V++    +
Sbjct: 84  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSSSWFFANSINTAESIVVSKSYNIN 143

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI ++            + +GDQ++IE+Y+ G E    
Sbjct: 144 TDPMKRPYVIKPLTQGSSIGVEVIFEEDDFNFA---DYDFPYGDQVVIERYIKGREFQVA 200

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +  ++Y+++   +   ++ + C
Sbjct: 201 VLNSKALGALEIKLIKNRFYDYETKYTEGFAEHLCPAPLHANLYEKLLIESEKIYKTMNC 260

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 261 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIAEIIKTAS 317


>gi|34499796|ref|NP_904011.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
 gi|39930963|sp|Q7NQ01|DDLB_CHRVO RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|34105646|gb|AAQ62000.1| D-alanine--D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 303

 Score =  205 bits (522), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 96/297 (32%), Positives = 149/297 (50%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    SAL   G      D        L     D  FN+LHG
Sbjct: 7   VAVLMGGSSSEREVSLMSGAGVLSALRSKGVDAHGFDPSEKPLSALKEEGFDCVFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            FGEDG +Q  LE L +PYT  G++ASA++MDK R+K +    G+P+        N    
Sbjct: 67  PFGEDGTLQGALEALGMPYTGCGVMASAIAMDKWRTKLLWKGAGLPIPAFELLDENSDFD 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G+  +K+   +     ++  +   D+++I +   G    
Sbjct: 127 AIERQLGLPIFVKPSTEGSSIGVTKVKQPGELRAAFEEARKY---DKVVIAEQFIGGGEY 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   +   T    P +++Y Y+ KY   ++ +  P+ +  ++    + LA  A + +
Sbjct: 184 TCAVIGETAYPTIKIEPATEYYDYQAKYFRDDTVYRCPSGLAPEVEARARELALKAFKVL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRG SR DFL D    +++ LE N  PGMT  S+ P  A   G ++ +L L +++ 
Sbjct: 244 GCRGWSRVDFLMDEA-GEIYLLEANTSPGMTSHSLVPMAARAEGIAYEDLCLKVLDT 299


>gi|209963942|ref|YP_002296857.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
 gi|209957408|gb|ACI98044.1| D-alanine--D-alanine ligase B [Rhodospirillum centenum SW]
          Length = 315

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 140/304 (46%), Positives = 205/304 (67%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--KPDLAFNVL 58
           +AVLMGG S+ER+VSL SG++ A+ALE+ G+ V+ +DV R +  +L  L  KPD+ FN L
Sbjct: 14  VAVLMGGWSAERDVSLVSGRSVAAALEERGYAVTAVDVQRDLPALLHALTPKPDVVFNAL 73

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDGL+Q +LE L +PYTHSG+LASAL+M+K  +++V+++ GVPV   + V R  +
Sbjct: 74  HGRGGEDGLIQGVLEYLGVPYTHSGVLASALAMNKEMTRRVLAAVGVPVPDGVTVTREQI 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H I PPYV+KP+  GSS+G+ +++  Q+    +L+   W +G+++L+E+++ G ELT
Sbjct: 134 LAGHPIEPPYVVKPVDEGSSVGVRIVRPGQN--QSVLEEGGWAYGERVLVERFIPGRELT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GVMGD +       VP+S F+ Y  KY+   + HV PA+IP D+ +E  RLA LAH+ +
Sbjct: 192 VGVMGDRA-LAVTEIVPRSGFFDYAAKYTEGEAVHVCPAQIPQDVQEEALRLALLAHRTL 250

Query: 239 GCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GC G+SRSDF +D     +  +++LE N QPG T +S+ PE AA  G  F EL  W+VE 
Sbjct: 251 GCSGVSRSDFRWDDSQAGTGGLYFLETNTQPGFTALSLLPEQAASQGIGFAELCAWIVEQ 310

Query: 296 ASCL 299
           A C 
Sbjct: 311 ARCH 314


>gi|206890747|ref|YP_002249129.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
 gi|226696392|sp|B5YFT1|DDL_THEYD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206742685|gb|ACI21742.1| D-alanine--D-alanine ligase B [Thermodesulfovibrio yellowstonii DSM
           11347]
          Length = 304

 Score =  205 bits (522), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 184/303 (60%), Gaps = 8/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+A  +AL++ G+ V  ID    +   +   K D+AF VLHG
Sbjct: 3   VGVIAGGISSEREVSLRSGQAVFNALKELGYDVVFIDAGIDLCEKIKIEKIDIAFLVLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116
            +GE+G VQ +LE++ IPYT SG+LASAL+MDK  SK++    G+PV P           
Sbjct: 63  GWGENGAVQGMLEVMGIPYTGSGVLASALAMDKEASKKIFLYHGIPVPPFKVLNKKDYIS 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +  S    S P V+KP + GSS+G+ ++K ++     +  + ++  G +++IE++++G E
Sbjct: 123 SAVSLSSFSFPCVVKPAEEGSSIGVNIVKNEREFKNAI--NEAFQFGKRVIIEKFIEGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +  GV+GD +L       PK  FYSYE KY+   + ++LP +I   +Y++++ L   AH+
Sbjct: 181 IHIGVLGDKALGGV-EVRPKKGFYSYEAKYTKGLTEYILPPEIDNALYEKLKELGLKAHK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++ C+G +R D + D      + LE+N  PGMT  S+ P++A+ AGY F+ L+  ++E +
Sbjct: 240 SLNCKGGTRVDMIVDQQGN-PYVLEVNTIPGMTETSLLPKIASLAGYDFKGLVKEILELS 298

Query: 297 SCL 299
              
Sbjct: 299 LKN 301


>gi|148265982|ref|YP_001232688.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
 gi|190359135|sp|A5G8J7|DDL_GEOUR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146399482|gb|ABQ28115.1| D-alanine--D-alanine ligase [Geobacter uraniireducens Rf4]
          Length = 310

 Score =  205 bits (521), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 116/299 (38%), Positives = 182/299 (60%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREVSLKSGAAVHQALLARGYDAVAIDVDRDIAQVLVREWVDVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE++ IPYT SG+LASAL+M+K+ +KQ   +  + V P  +  R    +
Sbjct: 71  RYGEDGAIQGLLEIMGIPYTGSGVLASALAMNKIFAKQAFQAARLTVAPYKVFCRGDKAA 130

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+KP + GSS+G+ ++KK+      +    ++ +  ++L+EQ++ G E+ 
Sbjct: 131 LAELEFSLPVVVKPSQEGSSVGVSIVKKESEFAAAM--KEAFRYDREILVEQFIKGSEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L      VPK++FY ++ KYS   + H+LPA++P ++Y++V R    AH+A+
Sbjct: 189 VGILEDKALGAI-EIVPKNEFYDFDAKYSPGMAEHILPARLPAELYRKVLRAGEDAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F +L+  ++  A+
Sbjct: 248 GCSGYSRVDFLVTEE-GACYILEVNTLPGMTDLSLLPEIARGSGIGFEDLVERILAAAA 305


>gi|26988073|ref|NP_743498.1| D-alanine--D-alanine ligase [Pseudomonas putida KT2440]
 gi|39931112|sp|Q88N74|DDLB_PSEPK RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24982797|gb|AAN66962.1|AE016324_12 D-alanine--D-alanine ligase B [Pseudomonas putida KT2440]
          Length = 318

 Score =  205 bits (521), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +        +  +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSTQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY   ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIVNDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|84501759|ref|ZP_00999931.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
 gi|84390380|gb|EAQ02939.1| D-alanine--D-alanine ligase [Oceanicola batsensis HTCC2597]
          Length = 297

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 139/301 (46%), Positives = 185/301 (61%), Gaps = 9/301 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL   G++V ++D DR +   LA L PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECAAALRGEGYEVVEVDADRDLSARLADLSPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + IPYTHSG+LASAL+MDK R+K V    G+P   S L  R  + S+H++
Sbjct: 61  DGCVQGVLEWMRIPYTHSGVLASALAMDKERTKGVYRQAGLPFAESCLARRSEIVSRHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ ++ +  + P  + ++      + L++E++V G ELT  VMG 
Sbjct: 121 EPPYVVKPFNEGSSVGVYLVHEVANGPPQVDEALP----ETLMVEKFVPGRELTVSVMGT 176

Query: 185 ASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
              D   + V       +Y YE KY+   S HV PAKIP DI       A  AH A+GCR
Sbjct: 177 GEGDPGPLCVTEILTDGWYDYEAKYTPGGSRHVCPAKIPQDIAAACLDYARRAHVALGCR 236

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE A   G  F  L  W+VEDASC 
Sbjct: 237 GVSRTDFRWDETRGAKGLILLETNTQPGMTPTSLTPEHAQAMGIGFGALCRWLVEDASCN 296

Query: 300 R 300
           R
Sbjct: 297 R 297


>gi|330811577|ref|YP_004356039.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327379685|gb|AEA71035.1| D-alanine--D-alanine ligase B [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 321

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 106/295 (35%), Positives = 159/295 (53%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLQALQSAGVDAFGIDVGDDFLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLASEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +        + ++  Q+L+EQ++ G E T
Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVNSLPELTAA--WKDASSYDSQVLVEQWITGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P +  Y Y+ KY + ++ + +P  +     KE+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYVANDTQYRIPCGLDAAKEKELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R+D + D    + ++LE+N  PGMT  S+ P  A  AG  F++L++ ++
Sbjct: 257 GIAGWGRADVMQDA-DGQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVVSIL 310


>gi|225850175|ref|YP_002730409.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
 gi|225644851|gb|ACO03037.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Persephonella marina EX-H1]
          Length = 303

 Score =  205 bits (520), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 163/298 (54%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           +A+L GG SSERE+S+ SGKA  +AL+  GF+ S  D    +     +    PDLAF  L
Sbjct: 6   IALLYGGSSSEREISIKSGKAVENALKKLGFQYSVFDPAEGKDFIKKITDYNPDLAFIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +LE L I YT S +  SA+ MDK  +K ++ + G+ V     +     
Sbjct: 66  HGKIGEDGTIQGVLEFLGIKYTGSDLKTSAICMDKSLTKDILKAEGITVPEGYTIQNLDQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP   GSS+G+ +++ +  +   + +        +++IE+++ G E+T
Sbjct: 126 INDLRLGYPVVVKPNSEGSSIGVKIVENEDQLGKAVGEILKI--DSKVIIERFIKGREIT 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++             K  FY Y  KY S  + ++ PA+I   +Y+++Q  A   +  +
Sbjct: 184 VGILNG-EPLDIIEIKVKEGFYDYYNKYISQETEYICPAEIESSLYRKIQNTALKIYNIL 242

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G++R DF+ D    K ++LE+N  PG+T  S+ P+ AA  G +F  L+L ++E A
Sbjct: 243 GCKGVARVDFILDK--DKPYFLEVNTIPGLTDHSLIPKAAAVKGINFESLILKIIEGA 298


>gi|307824834|ref|ZP_07655057.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
 gi|307734192|gb|EFO05046.1| D-alanine/D-alanine ligase [Methylobacter tundripaludum SV96]
          Length = 310

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 104/300 (34%), Positives = 156/300 (52%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG ++EREVSL SG A   AL+  G     IDV  S    LA  K D  FN++HG
Sbjct: 15  VAVMMGGSAAEREVSLRSGAAVYEALKRKGVDAIAIDVTGSPIEALAGQKFDRVFNIIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTM 118
             GEDG++Q +LE+L+IPYT SG++ASAL+MDK+R+K      G+  P    ++      
Sbjct: 75  RGGEDGVLQGVLEVLDIPYTGSGVMASALTMDKLRTKLCWQGYGLVTPKWCLLIDESDLD 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+        +   L  ++ +     +  E +V G E T
Sbjct: 135 GCIEKLGFPVIVKPAQEGSSIGMSKASNRDELLAALSVAAKYRCD--VYAEAWVTGKEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L V  +  P +  Y YE KY +  + +  P  +  D    ++ LA  A + +
Sbjct: 193 VAVLDGEALPVIRLETPNTF-YDYEAKYQATTTQYHCPCGLSQDQELFIRDLAVTACKVV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R D   D L  +   +E+N  PGMT  S+ P  A  AG  F EL+  ++E  SC
Sbjct: 252 GVKGWGRVDVFIDDL-GQYQLIEVNTVPGMTDHSLVPMAARQAGMDFEELVWRILET-SC 309


>gi|319778482|ref|YP_004129395.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
 gi|317108506|gb|ADU91252.1| D-alanine--D-alanine ligase [Taylorella equigenitalis MCE9]
          Length = 312

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 161/301 (53%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+   +AL+  G+ +   D+      +L     DLAF  LHG
Sbjct: 7   IAVLYGGNSAEREVSLMSGQGVGNALKSRGYNIELFDIA--NRDLLELKNFDLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG +Q  LELL+IPYT  G+++S++ M+K+ SK++    G+P      +       
Sbjct: 65  KYGEDGCIQGFLELLKIPYTGPGVMSSSVGMNKIVSKKIFIHEGIPTPEFRVVRDYEGLE 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP + GS++G+  +     +     +S      +++L+E+ ++G ELT
Sbjct: 125 KATQEIGYPIIVKPPQEGSTIGLKKVHSQDELTEAFNESI--KFDEEMLVEKCIEGRELT 182

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             ++G +           V     Y YE KY+  ++ ++ PAK+  ++ + ++ +   A+
Sbjct: 183 VAIIGKSPDTRALPIIEIVTPDGNYDYEQKYTRDDTQYICPAKLDENLARNIENICIKAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++ C+G SR D + D  +   + LEIN  PGMT  S+ P  A   G S+ ++   +++ 
Sbjct: 243 DSLECQGWSRVDVMLD-KNNCPWVLEINTSPGMTSHSLVPMAAKAIGLSYEDICEEILKT 301

Query: 296 A 296
           A
Sbjct: 302 A 302


>gi|313500435|gb|ADR61801.1| Ddl [Pseudomonas putida BIRD-1]
          Length = 318

 Score =  205 bits (520), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVAIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +        +  +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|237747014|ref|ZP_04577494.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
 gi|229378365|gb|EEO28456.1| D-alanine-D-alanine ligase [Oxalobacter formigenes HOxBLS]
          Length = 321

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 161/304 (52%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGKA   AL+  G      D   +    L   + D  F  LHG
Sbjct: 13  VGVLYGGKSAEREVSLVSGKAVCEALKSRGVDAHLFDTGINDPARLQDERFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE ++IPYT SG+LASA++MDK+ +K++  + G+P    + +   +   
Sbjct: 73  RYGEDGCMQGMLEQMQIPYTGSGVLASAIAMDKIMTKRLWLAEGLPTPRYVELKADSDSG 132

Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +     P ++KP   GS+LG+  +K+   +      + +  +   +L E+++ G+ELT
Sbjct: 133 KVMAHLGLPLIVKPAHEGSTLGLTRVKQADQLADAY--ALASKYDRSVLAEEFIKGMELT 190

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++       T      +     Y Y  KY +  + ++ P  +  +  +++++ A  ++
Sbjct: 191 CAILELDGKPQTLPLIRIIAPDANYDYHNKYFNDKTRYLCPCGLDAETEEKIRQCALKSY 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GCRG  R D +      + F LE+N  PGMT  S+ P  A  AG S+ +L L +++ 
Sbjct: 251 QALGCRGWGRVDVILRASDNEPFLLELNSSPGMTGHSLVPMAARQAGLSYEDLCLTLLQS 310

Query: 296 ASCL 299
           A+  
Sbjct: 311 ATLD 314


>gi|221638520|ref|YP_002524782.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
 gi|221159301|gb|ACM00281.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides KD131]
          Length = 294

 Score =  204 bits (519), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 146/299 (48%), Positives = 196/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +G
Sbjct: 2   LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++H+
Sbjct: 62  EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHI 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + PPYV+KP   GSS+G+ ++ +D + P  L           L++E YV G ELT  VMG
Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QNLMVETYVPGRELTVTVMG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRGI
Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC R
Sbjct: 236 SRSDLRWDESRGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294


>gi|157827096|ref|YP_001496160.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
 gi|166198502|sp|A8GW96|DDL_RICB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157802400|gb|ABV79123.1| D-alanine--D-alanine ligase [Rickettsia bellii OSU 85-389]
          Length = 321

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +    AL +AG+KV+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISAEGVGKALIEAGYKVTFIDMGADIAVKLHEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+LAS+L+ DK+ S+    +  + +  SI++++     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLASSLAFDKVHSRSWFLTNNINMAESIVISKGDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  PYVIKP   GSS+G+ VI ++         +  + +GD+++IE+Y+ G EL   
Sbjct: 145 TDPIKRPYVIKPFTQGSSIGVEVIFEEDDFNFA---NYDFPYGDEVIIEKYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI + K+ FY YE KY+   + H+ PA +P DIY ++ + +   +  + C
Sbjct: 202 ILNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPTDIYDKLLKESEKIYNTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAY G  F  L+  +++ AS
Sbjct: 262 KGAARAEFILEDGTNKLYALEINTHPGMTPLSIVPEIAAYHGIDFVNLIEEILKTAS 318


>gi|94498828|ref|ZP_01305372.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
 gi|94421716|gb|EAT06773.1| D-alanine--D-alanine ligase [Sphingomonas sp. SKA58]
          Length = 321

 Score =  204 bits (518), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 121/300 (40%), Positives = 178/300 (59%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSLSSG+  A ALE  G KV++ID+DR+V   LA  K D+ FN LHG
Sbjct: 8   VAVLMGGWSAERPVSLSSGEGVAKALESRGHKVTRIDMDRNVAQRLAETKADVIFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V   ++ +
Sbjct: 68  VPGEDGTVQGMMDLMGLTYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGHVVESESLFT 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +            W    +LL E Y+ G ELT
Sbjct: 128 ADPLPRPYVLKPVNEGSSVGVAIVTAEGNYGNPIARDAVGPWQDFPELLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V       +     PKS FY ++ KY+   + HV PA IP DI +  + +A  AHQ +
Sbjct: 188 TAV-LGDEALLVTELRPKSGFYDFDAKYTDGMTEHVCPADIPPDISEACKAIALRAHQLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       ++ LE+N QPGMTP+S+ PE AA  G  +  L+  +VE+A
Sbjct: 247 GCKGASRADFRWDDERGLNGLYLLEVNTQPGMTPLSLVPEQAAKLGIDYATLVETIVEEA 306


>gi|332557545|ref|ZP_08411867.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
 gi|332275257|gb|EGJ20572.1| D-alanine--D-alanine ligase [Rhodobacter sphaeroides WS8N]
          Length = 294

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 147/299 (49%), Positives = 196/299 (65%), Gaps = 8/299 (2%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           LMGG S+EREVSLSSG +C++AL DAG++V+++D    +  VLA L PD  FN LHG +G
Sbjct: 2   LMGGASTEREVSLSSGHSCSAALRDAGYEVTEVDAGPDLARVLAELSPDAVFNALHGRWG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK R+K+V ++ G+PV  S+L     + ++HL
Sbjct: 62  EDGCVQGLLEWLRIPYTHSGVLASALAMDKARAKEVFAAAGLPVTQSVLATPEEVRARHL 121

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + PPYV+KP   GSS+G+ ++ +D + P  L           L++E YV G ELT  VMG
Sbjct: 122 LPPPYVVKPNAEGSSVGVYIVHEDANGPPQLAADMP----QDLMVETYVPGRELTVTVMG 177

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D  L VT+I      +Y Y+ KY    S H++PA +P +I +    +A  AH+A+GCRGI
Sbjct: 178 DRVLAVTDIL--SDGWYDYDAKYRPGGSRHIVPADLPAEITEACHDIALRAHRALGCRGI 235

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SRSD  +D       +  LE N QPGMTP S+ PE AA+ GYSF E   W+VEDASC R
Sbjct: 236 SRSDLRWDEARGLAGLILLETNTQPGMTPTSLSPEQAAHCGYSFPEFCAWLVEDASCSR 294


>gi|188996366|ref|YP_001930617.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931433|gb|ACD66063.1| D-alanine/D-alanine ligase [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 299

 Score =  204 bits (518), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA   AL   G+     D+         +   KPDLAF VL
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYDYKVFDIIERDKFIKEILEYKPDLAFIVL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + +  +P    I       
Sbjct: 64  HGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFDIPTPDWIFFTEEKE 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+K    GSS+G+ ++   Q     + +  +    D++LIE+++ G ELT
Sbjct: 124 ALNYRPDFPAVVKAPTEGSSIGVYIVNNQQEYENAVKEVFNL--DDKVLIEKFIKGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D   D+ E+ V +   Y +  KY +  + ++ PA++  D+YK VQ L    ++ +
Sbjct: 182 VSILDDEVFDIVEVVVSEGF-YDFNNKYITGKTQYICPAQLDEDVYKNVQGLGHKVYKLL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G +R D +     +  + LE+N  PGMT  S+ P+ A+  G +F +L+  +++++
Sbjct: 241 NCKGPARVDIIL-ENDKNPYVLEVNTIPGMTEFSLLPKAASARGITFNQLVEKIIKNS 297


>gi|148549590|ref|YP_001269692.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148513648|gb|ABQ80508.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 318

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALSTAGVDVVGIDVGDDLLARLQSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +        +  +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSVKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GQFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|157964319|ref|YP_001499143.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
 gi|167012331|sp|A8F110|DDL_RICM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157844095|gb|ABV84596.1| D-alanine--D-alanine ligase [Rickettsia massiliae MTU5]
          Length = 321

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 114/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G+ V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYSVTFIDMGADITVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFNKIHSRSWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  + +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L V EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGVLEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALELNTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|330877131|gb|EGH11280.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 319

 Score =  203 bits (517), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDYAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|291279001|ref|YP_003495836.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
 gi|290753703|dbj|BAI80080.1| D-alanine-D-alanine ligase [Deferribacter desulfuricans SSM1]
          Length = 291

 Score =  203 bits (516), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 100/294 (34%), Positives = 163/294 (55%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL +G+A   AL++ G+    IDVD +V   +   +PD  F  LHG
Sbjct: 5   IAVLCGGLSSEREVSLKTGEAVKQALDNLGYDAFLIDVDNNVDKKIRETQPDYCFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPY  +G+ ASA++ DK  +K +V S G+      L        
Sbjct: 65  KYGEDGSIQGLLEVLGIPYNGAGVAASAIAYDKHLTKVLVQSVGIKTPDYYLCEND---- 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + +   P V+KP + GS++GI ++K           S +  +  ++LIE++++G ELT G
Sbjct: 121 KDIRFLPAVVKPAREGSTIGISIVKSKDEFSKAF--SEAKKYDSRVLIERFIEGKELTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ +  L       P   FY YE KY+   + ++    + +D   ++  ++      IGC
Sbjct: 179 IINNEVLPTIY-IKPIKGFYDYESKYTKGMTEYIFETGLNVDETDKLNNISLKVADLIGC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             + R D+++D    + F LE+N  PGMT  S+ P+ A  AGY F +L+  +++
Sbjct: 238 SSLCRIDYIYDGK--EFFLLEVNTIPGMTETSLLPKAAKKAGYDFEKLIDKIIK 289


>gi|167035501|ref|YP_001670732.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
 gi|189083045|sp|B0KFS4|DDL_PSEPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166861989|gb|ABZ00397.1| D-alanine--D-alanine ligase [Pseudomonas putida GB-1]
          Length = 318

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 159/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL  AG  V  IDV   +   L   + D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGAAVIDALTTAGVDVVAIDVGDDLLARLQSEEIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P     +       +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWQSLGIPTPRHAVLASESDCL 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +   Q +        +  +  Q+L+EQ++ G E T
Sbjct: 140 QASTELGFPLIVKPAHEGSSIGMAKVNSAQELVAA--WQDAAKYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P    Y Y+ KY + ++ + +P  +     +E+  L   A  AI
Sbjct: 198 IAVLRGQVLPPIALGTPHVF-YDYDAKYIANDTQYRIPCGLDSAKEQELIDLTARACDAI 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ ++  
Sbjct: 257 GIEGWGRLDVMQDEQ-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAESVA 315

Query: 299 LR 300
            R
Sbjct: 316 TR 317


>gi|300309680|ref|YP_003773772.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
 gi|300072465|gb|ADJ61864.1| D-alanine-D-alanine ligase B protein [Herbaspirillum seropedicae
           SmR1]
          Length = 334

 Score =  203 bits (516), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 89/310 (28%), Positives = 147/310 (47%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVS+ SG     AL   G      D        L   + D  F  LHG
Sbjct: 13  VGVLFGGRSAEREVSMMSGNGVLQALRSKGVDAHPFDPAERSLGELQAEQFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LE + +PYT  G+++S+++MDK+ +K++  S G+P    + ++      
Sbjct: 73  RYGEDGTLQGALEQMGLPYTGPGVMSSSIAMDKVMTKRIWLSHGLPTPRFLTLDAQATTR 132

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + L      +  P ++K    GS++GI  +     +           +   +L E+++ G
Sbjct: 133 EQLRLVPDTLGLPLMLKAPHEGSTIGIAKVNGYSDMQEGF--DLCARYDKVVLAEEFIRG 190

Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELT         A              Y Y+ KY + ++ ++ PA +  ++ + +Q LA
Sbjct: 191 RELTVPVLGTGSAARALPVIEIRAPEGNYDYQNKYFTDDTKYLCPAPLDEELTRHLQNLA 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             A  A+GCRG SR DF+   +    + + LEIN  PGMT  S+ P  A   G S+ +L 
Sbjct: 251 VQAFNALGCRGWSRVDFMLREVDGKAEPYLLEINTSPGMTGHSLVPMAAKAVGMSYEDLC 310

Query: 290 LWMVEDASCL 299
             +++ A+  
Sbjct: 311 CEILQMAALD 320


>gi|229588492|ref|YP_002870611.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens SBW25]
 gi|229360358|emb|CAY47215.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens SBW25]
          Length = 318

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 159/301 (52%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A   AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLEALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P      +      +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDA--WKAASTYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHTF-YDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D      ++LE+N  PGMT  S+ P  A  AG  F++L+L ++  AS 
Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL-AASI 314

Query: 299 L 299
            
Sbjct: 315 E 315


>gi|85707769|ref|ZP_01038835.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
 gi|85689303|gb|EAQ29306.1| D-alanyl-D-alanine ligase [Erythrobacter sp. NAP1]
          Length = 332

 Score =  203 bits (515), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 120/303 (39%), Positives = 176/303 (58%), Gaps = 7/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++EREVSL SG   + ALE  G +V+QID+DR V   +   KPD+ FN LHG
Sbjct: 18  VAVLMGGWANEREVSLMSGAGVSDALEMNGHRVTQIDMDRDVAQRITEAKPDVVFNALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   GVP     +V    +  
Sbjct: 78  VPGEDGSVQGMLDLMGVAYTHSGMATSVIAIDKQLTKQALIPHGVPFPGGRIVATKDIFE 137

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++ +D ++   + +     W   DQLL E ++ G ELT
Sbjct: 138 RDPLPRPYVLKPVNEGSSVGVAIVTEDSNVGNPINRDAPGPWQQFDQLLAEPFIKGRELT 197

Query: 179 ---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                             + +  FY YE KY+   + HV PA IP +I    +  A  AH
Sbjct: 198 TAVIDGADGPRALGVTELIIEHGFYDYEHKYTEGRTQHVCPADIPAEIAALCEDYAIRAH 257

Query: 236 QAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +GC G SR+DF +D  + +  +F LE N QPGMTP+S+ PE A +AG S+ EL+  +V
Sbjct: 258 KVLGCHGTSRTDFRWDDEAGEDGLFVLETNTQPGMTPLSLVPEQAKHAGISYPELVELIV 317

Query: 294 EDA 296
            +A
Sbjct: 318 REA 320


>gi|85373189|ref|YP_457251.1| D-alanine--D-alanine ligase [Erythrobacter litoralis HTCC2594]
 gi|122545201|sp|Q2NCY7|DDL_ERYLH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84786272|gb|ABC62454.1| D-alanyl-D-alanine ligase [Erythrobacter litoralis HTCC2594]
          Length = 323

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 122/300 (40%), Positives = 181/300 (60%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG ++EREVSL SG+  A ALE  G  V++ID+DR V   +A   PD+ FN LHG
Sbjct: 9   VVVLMGGWANEREVSLMSGEGVAKALEKRGHTVTRIDMDRQVAAKIAEAAPDVVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 69  VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKELTKQQLVPRGIPMPGGRIVQSEDLYQ 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELT 178
           Q  ++ PYV+KP+  GSS+G+ ++  + +    + +     W    +LL E ++ G ELT
Sbjct: 129 QDPLARPYVLKPVNEGSSVGVAIVTDESNYGNPIRRDAPGPWQEFRELLAEPFIRGRELT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G  +        PKS FY ++ KY+   + HV PA IP +I    ++ A  AH+ +
Sbjct: 189 TAVVGGQA-LAVTELKPKSGFYDFDAKYTDGMTEHVCPADIPPEIEALCKKYALEAHRIL 247

Query: 239 GCRGISRSDFLFDPL--SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SR+D+ +D       +F LE N QPGMTP+S+ PE AAYAG S+ +L+  +VE A
Sbjct: 248 GCRGTSRTDYRWDDEQGDDGLFVLETNTQPGMTPLSLVPEQAAYAGMSYEDLVEAIVEAA 307


>gi|83942737|ref|ZP_00955198.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
 gi|83953976|ref|ZP_00962697.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83841921|gb|EAP81090.1| D-alanine--D-alanine ligase [Sulfitobacter sp. NAS-14.1]
 gi|83846830|gb|EAP84706.1| D-alanine--D-alanine ligase [Sulfitobacter sp. EE-36]
          Length = 292

 Score =  203 bits (515), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 137/298 (45%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ACA+AL D  F+V ++D    +   L   +PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRACAAALRDRSFEVIEVDCGPDLCADLGAAQPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE + +PYTHSG+LASAL+MDK RSK+V  + G+PV  S++V+  T+   H++
Sbjct: 61  DGCVQGLLEWMGLPYTHSGVLASALAMDKQRSKEVFRAAGLPVVESLIVSAATVRGSHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+G+ +      I  +           ++++E+++ G ELT  VMG+
Sbjct: 121 DPPYVVKPNNEGSSVGVYL----VEIENNGPPQLDDAMPAEVMVEKFIPGRELTTTVMGE 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+  +  + +Y Y+ KY +  STHV+PA IP +I++     A  AH A+GCRG+S
Sbjct: 177 RALTVTD--IHTTGWYDYDAKYKAGGSTHVVPADIPHEIFELCMDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +F LE N QPGMTP S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDESKGAAGLFLLETNTQPGMTPTSLSPEQAQAVGISFGELCAWMVEDASCNR 292


>gi|224826080|ref|ZP_03699183.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
 gi|224601717|gb|EEG07897.1| D-alanine/D-alanine ligase [Lutiella nitroferrum 2002]
          Length = 303

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S+EREVSL SG     AL+  G      D        L     +  F  LHG
Sbjct: 7   VAVMMGGTSAEREVSLMSGGGVLKALQSQGVDAHAFDPAEKPLAALKDEGFERVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LE + +PYT  G++ASA+ MDK R+K +    G+P+   +L+   +  +
Sbjct: 67  PFGEDGTLQGALETMGMPYTGCGVMASAIGMDKWRTKLLWQGAGLPIPAFVLLADDSNFA 126

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G+  +K    +     ++  +   D+L+I +   G    
Sbjct: 127 AVEAQLGLPLFVKPATEGSSIGVTKVKHPGELRAAYEEARRY---DKLVIAEAFVGGGEY 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +       T    P ++FY Y+ KY   ++ +  P+ +  ++    + LA  A + +
Sbjct: 184 TCAIIGDKALPTIKIEPATEFYDYQAKYFRDDTVYRCPSGLSAEVELRARELALTAFKVL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D     ++ LE+N  PGMT  S+ P  A   G S+ EL L +++ A
Sbjct: 244 GGRGWGRVDFLMDEAGG-IYLLEVNTSPGMTSHSLVPMAARVEGLSYEELCLAILDMA 300


>gi|330964059|gb|EGH64319.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 319

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGHAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|213966565|ref|ZP_03394716.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384720|ref|ZP_07233138.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato Max13]
 gi|302059792|ref|ZP_07251333.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato K40]
 gi|302131739|ref|ZP_07257729.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato NCPPB
           1108]
 gi|213928415|gb|EEB61959.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|331016736|gb|EGH96792.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 319

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|229586498|ref|YP_002844999.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
 gi|259645172|sp|C3PMU6|DDL_RICAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|228021548|gb|ACP53256.1| D-alanine--D-alanine ligase [Rickettsia africae ESF-5]
          Length = 321

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 189/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+++GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMVGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGMLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|51473447|ref|YP_067204.1| D-alanine--D-alanine ligase [Rickettsia typhi str. Wilmington]
 gi|81390201|sp|Q68XC0|DDL_RICTY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51459759|gb|AAU03722.1| Alanine:alanine ligase (ADP-forming) [Rickettsia typhi str.
           Wilmington]
          Length = 321

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 117/297 (39%), Positives = 188/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ ID+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLISSVGVSKALIELGYKVTFIDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+       + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSCFLKNNINMADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++            + +G+ ++IEQY+ G EL   
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFH---FIDYDFPYGEDIIIEQYIQGQELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI + K+ FY YE KY+   + HV PA++P ++YK++   +   ++ I C
Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNKGFAKHVCPAQLPANLYKKLLIESEKIYKTINC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG SF  L+  +++ AS
Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGISFTNLIEEIIKMAS 318


>gi|15892256|ref|NP_359970.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
 gi|22095562|sp|Q92IT7|DDL_RICCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15619394|gb|AAL02871.1| D-alanine--D-alanine ligase [Rickettsia conorii str. Malish 7]
          Length = 321

 Score =  202 bits (514), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 186/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +   I+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAEGIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|153006725|ref|YP_001381050.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|190359108|sp|A7HH70|DDL_ANADF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152030298|gb|ABS28066.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 308

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 111/301 (36%), Positives = 164/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V+ +DVD  +   L  L+ D+AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRARGHDVTLVDVDAELPARLRELRVDVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE + IPYT SG+ ASA+ MDK  SK +  + G+ V             
Sbjct: 69  RWGEDGCVQGLLECMGIPYTGSGVTASAMGMDKTVSKAIFKALGLDVIEYRAFPPARAAE 128

Query: 121 QHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             L       P V+KP   GSS+G+ ++K    +     +++ +     +++E+YV G E
Sbjct: 129 IDLRDLPFGVPCVVKPAGEGSSVGVQIVKDAARLADACREAARYKGD--VVVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L       P ++FY Y  KY++  + +  PA+IP      V   A  AH+
Sbjct: 187 VNVAVLEGKALGAI-EIAPANEFYDYAAKYTAGTTRYYYPARIPEAHASRVMAAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC G++R DF+  P     F LE+N  PGMT  S+ P++AA  G +F EL   +++ A
Sbjct: 246 GLGCSGVTRVDFIVAP-DGTPFILEVNTLPGMTATSLVPKIAAGLGLAFPELCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|254488243|ref|ZP_05101448.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
 gi|214045112|gb|EEB85750.1| D-alanine--D-alanine ligase [Roseobacter sp. GAI101]
          Length = 292

 Score =  202 bits (514), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 140/298 (46%), Positives = 188/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLSSG+ACA+AL D  F V ++D    +   L  + PD+  N LHG +GE
Sbjct: 1   MGGPSAEREVSLSSGRACAAALRDRNFDVVEVDAGPDLCADLRAVAPDVVLNCLHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ ILE + IPY+HSG+LASAL+MDK RSK V  + G+PV  SI+     + + H++
Sbjct: 61  DGCVQGILEWMHIPYSHSGVLASALAMDKQRSKDVFRTVGLPVVESIIALASDVRAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++  + + P  L  +      D +++EQ+  G ELT  VMG 
Sbjct: 121 APPYVVKPNNEGSSVGVYLVDVENNGPPQLDDNMP----DYVMVEQFAAGRELTTTVMGQ 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I    + +Y Y+ KY    STH++PA IP DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDIL--TTGWYDYDAKYKEGGSTHIVPADIPQDIFDLCLDYALRAHNALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A   G SF +L  WMVEDASC R
Sbjct: 235 RTDFRWDESRGVDGLILLETNTQPGMTPTSLSPEQAQAVGISFGDLCAWMVEDASCHR 292


>gi|119944905|ref|YP_942585.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119863509|gb|ABM02986.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 306

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 159/301 (52%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA  +AL   G     ID      L L  L  D  F  LHG
Sbjct: 8   VAVLFGGHSAEREVSLRSGKAVLNALLRQGIDAYAIDPKFDDLLQLKQLNFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  L  L+IPYT S +L+SA++MDK ++KQ+  S  +P     ++ +   D 
Sbjct: 68  RGGEDGVIQGFLSTLDIPYTGSDVLSSAIAMDKSKTKQIWQSLQLPTAQYRIIIKEAFDP 127

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +S   ++KP+  GSSLG+  +   + +   L  + ++     +L+E ++ G
Sbjct: 128 AQAEQILAGLSGIAIVKPVSEGSSLGMAKVSTAKELIKAL--TEAFKFDQTVLLETWITG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L         + FY Y+ KY S ++ +  P  +  +   E+ +LA  A
Sbjct: 186 QEYTVSILNGKALPAI-RMHTNNTFYDYQAKYQSTDTQYYCPCGLEQEKLAELNQLAVDA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AIGCRG  R DF+ D  S + + LE+N  PGMT  S+ P+ A  AGY F +L + +++
Sbjct: 245 FAAIGCRGWGRVDFMLD-KSGQWYLLEVNTVPGMTETSLVPKAAKEAGYDFDQLTIEILK 303

Query: 295 D 295
            
Sbjct: 304 Q 304


>gi|332283267|ref|YP_004415178.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
 gi|330427220|gb|AEC18554.1| D-alanine--D-alanine ligase [Pusillimonas sp. T7-7]
          Length = 315

 Score =  202 bits (513), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 155/304 (50%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+    AL   G      D  R   + L +   D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGQGVFEALRSVGVDAHLFDTGRYTLVDLINAGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q  LEL+ +PYT SG LAS+L+MDK+ +KQV    G+P     ++   T   
Sbjct: 68  RYGEDGTLQGALELMGLPYTGSGTLASSLAMDKIMTKQVWLQQGLPTPRYAILRPDTDLA 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               ++  P +IKP   GS+LG+  +    S+        +  +   +L EQ++ G ELT
Sbjct: 128 SVAAVLDLPLIIKPPHEGSTLGVTKVDGLDSLREAY--QLAARYDADVLAEQFIVGRELT 185

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                  G A        V     Y YE KY S ++ ++ PAK+   +   ++++A  A+
Sbjct: 186 VALLGGGGSARALPVIEIVAPDGNYDYEHKYISNDTQYICPAKLDDALSASIRQIAEQAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GC G  R+DF+ D    K + LEIN  PGMT  S+ P  A   G S+ EL L ++  
Sbjct: 246 VALGCEGWGRADFMLDEA-GKPWLLEINTSPGMTSHSLVPMAAKADGMSYAELCLEILST 304

Query: 296 ASCL 299
           ASC 
Sbjct: 305 ASCK 308


>gi|312959059|ref|ZP_07773578.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286829|gb|EFQ65391.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 322

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 158/295 (53%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     IDV       L   K D AF +LHG
Sbjct: 20  VAVLFGGKSAEREVSLKSGNAVLAALQSAGVNAFGIDVGDDFLARLQAEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P      +      +
Sbjct: 80  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHSVLCSEDDCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 140 SAAKELGLPLIVKPAHEGSSIGMAKVNSAAELIDA--WKAASTYDSQVLVEQWIQGPEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRGQVLPPIALGTPHTF-YDYDAKYVASDTQYRIPCGLDATKEQELMDLTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G +R+D + D      ++LE+N  PGMT  S+ P  A  AG  F++L+L ++
Sbjct: 257 GIAGWARADVMQDDQGN-FWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAIL 310


>gi|114773358|ref|ZP_01450562.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
 gi|114546292|gb|EAU49203.1| D-alanine--D-alanine ligase [alpha proteobacterium HTCC2255]
          Length = 304

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 128/302 (42%), Positives = 183/302 (60%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SG   ASAL   G+ VS ID D ++   +    PD+ FN LHG
Sbjct: 9   VTVLNGGPSVEREVSLVSGNEIASALRGEGYIVSIIDADENLAPKITASNPDVVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE ++IPYTHSG+ +SAL+MDK ++K V  + G+PV  S+LV++  + +
Sbjct: 69  RWGEDGCVQGLLEWMQIPYTHSGVYSSALAMDKEKTKDVYRAAGLPVAASMLVSKSEILN 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  PYV+KP   GSS+G+ ++         + +       D L++E+++ G ELT  
Sbjct: 129 SHPMPAPYVVKPYNEGSSVGVYIVNSGDKPISTIKEELP----DTLMVEEFIPGYELTVT 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L VT I      +Y ++ KY +  S H +PA +P +I+      A  AH+ + C
Sbjct: 185 VLDGNALTVTNII--TDGWYDFDAKYENGGSHHEIPANLPKEIFDACIDYAERAHECLNC 242

Query: 241 RGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RG+SR+DF +D       +  LE N QPGMTP S+ PE AAY G SF +++ WMVEDASC
Sbjct: 243 RGLSRTDFRWDENLGLSGLKLLETNTQPGMTPTSLAPEQAAYKGISFGQMVRWMVEDASC 302

Query: 299 LR 300
            R
Sbjct: 303 NR 304


>gi|295098596|emb|CBK87686.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           NCTC 9394]
          Length = 306

 Score =  202 bits (513), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +  D AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +     +PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLELIGMPYTGSGVMASAISMDKLRSKLLWQGADLPVAPWVALTRREYEM 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + K   +   L  + ++ H +++LIE++
Sbjct: 125 GLSDSVNTRIAALGLPVIVKPSREGSSVGMSKVDKAVDLADAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +  +   E+Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGLEAEREAELQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|34580724|ref|ZP_00142204.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
 gi|28262109|gb|EAA25613.1| D-alanine--D-alanine ligase [Rickettsia sibirica 246]
          Length = 321

 Score =  202 bits (512), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 114/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKLYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIAEIIKTAS 318


>gi|15604119|ref|NP_220634.1| D-alanine--D-alanine ligase [Rickettsia prowazekii str. Madrid E]
 gi|6919859|sp|Q9ZDS6|DDL_RICPR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3860811|emb|CAA14711.1| D-ALANINE--D-ALANINE LIGASE (ddlB) [Rickettsia prowazekii]
 gi|292571845|gb|ADE29760.1| D-alanine--D-alanine ligase [Rickettsia prowazekii Rp22]
          Length = 321

 Score =  202 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 115/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S    + AL + G+KV+ +D+   + + L  + PD+ FN LHG
Sbjct: 25  IALVAGGMSAEREVSLVSSAGVSKALIELGYKVTFVDMGADIAVKLQEINPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+  +  V    + +  SI+V++    +
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGLLSSALAFDKIHFRSCVLKNNINIADSIVVSKSDHIN 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++            + +G+ ++IEQY+ G EL   
Sbjct: 145 TDPMKRPYVIKPLKQGSSIGVEVIFEEDDFN---FTDYDFPYGEDIIIEQYIQGQELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI + K+ FY YE KY+   + HV PA +P ++YK++   +   ++ I C
Sbjct: 202 LLNGKALGVLEIKLLKNRFYDYETKYNEGFAEHVCPAPLPANLYKKLLIESEKIYKTINC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  R++F+ +  + K++ LEIN  PGMTP+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPVRAEFILEEQTNKLYVLEINTHPGMTPLSIVPEIAAYAGINFTNLIEEIIKMAS 318


>gi|302185267|ref|ZP_07261940.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae 642]
          Length = 319

 Score =  202 bits (512), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       I      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVIENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330957968|gb|EGH58228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 319

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGQAVLKALVDAGVDAFGIDVGGDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P      +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKTASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVP 316

Query: 299 LR 300
           +R
Sbjct: 317 VR 318


>gi|237799293|ref|ZP_04587754.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331022149|gb|EGI02206.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 319

 Score =  201 bits (511), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLHRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+P      +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     + ++ LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDVQEQALKELAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|227824970|ref|ZP_03989802.1| conserved hypothetical protein [Acidaminococcus sp. D21]
 gi|226905469|gb|EEH91387.1| conserved hypothetical protein [Acidaminococcus sp. D21]
          Length = 312

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           + V+MGG S EREVSL++G A   AL++ G+    ID+D S+    +      + FN +H
Sbjct: 7   IGVVMGGPSKEREVSLNTGSAIVEALKEKGYDAVPIDLDPSLFPSQIEDAGVKVVFNAVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +QA+LE+L +PYT SG+L+SA++M+K  +K++  + GV     + +      
Sbjct: 67  GLYGEDGRLQAVLEMLGVPYTGSGVLSSAIAMNKFYTKRMFEANGVKTANCLYLTDKDRQ 126

Query: 120 SQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P V+KP + GSS+G+ ++KK++ +   L ++   ++G  +L E +  G
Sbjct: 127 TAKQDIIRKLGIPCVVKPAEQGSSIGVTIVKKEEDLDKALEEAF--SYGKLVLAEAFFTG 184

Query: 175 IELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+  GVM D+S +   +      P  DFY Y  KY+   +T+  PA     + K +Q  
Sbjct: 185 KEVAAGVMMDSSGNPIAMPLVLIEPHVDFYDYHNKYTKGATTYTCPAPFDECLTKALQEE 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++A+GC G++R D + D        LE+N  PGMT  S+ P+ A   G SF +L  
Sbjct: 245 AVKAYKALGCSGVARVDEMVDAEGN-FICLEVNTIPGMTATSLVPKAAKAMGLSFPDLCE 303

Query: 291 WMVEDA 296
            ++E A
Sbjct: 304 KILETA 309


>gi|28871541|ref|NP_794160.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931109|sp|Q87WY7|DDLB_PSESM RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28854792|gb|AAO57855.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 319

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAEREVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S     P+   +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGPATPLHAVLENENDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +++++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDDAQEQQLKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG +F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAE-GKFWLLEVNTVPGMTDHSLVPMAARAAGLNFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|146305959|ref|YP_001186424.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
 gi|190359205|sp|A4XQS6|DDL_PSEMY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145574160|gb|ABP83692.1| D-alanine--D-alanine ligase [Pseudomonas mendocina ymp]
          Length = 313

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 167/302 (55%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       LA  K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLQRLASEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P      +       
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCE 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  ++  +++        +  +  Q+L+EQ++ G E T
Sbjct: 135 AAAAELGFPLIVKPAHEGSSIGMAKVESVEALIAA--WQDAARYDSQVLVEQWIAGPEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P S  Y Y+ KY + ++ + +P  +  +   E++ L   A +A+
Sbjct: 193 VAVLRGEVLPPIGLGTPHSF-YDYDAKYLADDTQYRIPCGLSAEKEAELKELTARACEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R+D + D  S + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 252 GTQGWARADVMQDA-SGQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310

Query: 299 LR 300
            R
Sbjct: 311 AR 312


>gi|71082730|ref|YP_265449.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
 gi|123647529|sp|Q4FPK8|DDL_PELUB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71061843|gb|AAZ20846.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1062]
          Length = 304

 Score =  201 bits (511), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 170/304 (55%), Gaps = 12/304 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119
           GEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N        
Sbjct: 67  GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPKYIKFNHKKNKLNI 126

Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               +  +  P V+KP+  GSS+ + +  K   +             +++LIE+++ G E
Sbjct: 127 IKLIEKNLKFPVVVKPINEGSSVHVYICDKTNILKN----LKVLKSYNEILIEEFIPGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M + SL   E+   +  +       SS  + H++P  +  +   ++  +A  AH+
Sbjct: 183 IQVAIMNNKSLGAIELEPRRKFYDYEAKYNSSAKTKHLIPVDLSKNNLAKITGIARAAHK 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++DA
Sbjct: 243 IIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300

Query: 297 SCLR 300
           S  R
Sbjct: 301 SINR 304


>gi|91762848|ref|ZP_01264813.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
 gi|91718650|gb|EAS85300.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter ubique
           HTCC1002]
          Length = 304

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 172/304 (56%), Gaps = 12/304 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +GK  A  L   G+KV   + D+++   +   KPD+ FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGKQVAKELIKNGYKVLISEPDKNLSKNITSFKPDVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119
           GEDG +QAILE  +IPYTHSG++AS+++MDK  SK++     +     I  N        
Sbjct: 67  GEDGYIQAILETKKIPYTHSGVIASSIAMDKEISKKIFIKNKILTPRYIKFNHKKNKLNI 126

Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               + ++  P V+KP+  GSS+ + +  K       +    +    +++LIE+++ G E
Sbjct: 127 IKLIEKILKFPVVVKPINEGSSVHVYICDK----TNIIKNLKALKSYNEILIEEFIPGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +M + SL   E+   +  +       SS  + H++P  +  +   ++  +A  AH+
Sbjct: 183 IQVAIMNNKSLGAIELEPKRKFYDYEAKYNSSAKTKHLIPVDLSKNNQAKITGIARAAHK 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC+G++RSDF F   + K + LEIN QPGMT +S+ PE+A + G SF +L+ W+++DA
Sbjct: 243 IIGCKGVTRSDFKF--FNGKFYLLEINTQPGMTKLSLVPEIAKHKGISFIKLIEWILKDA 300

Query: 297 SCLR 300
           S  R
Sbjct: 301 SINR 304


>gi|329901114|ref|ZP_08272730.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
 gi|327549213|gb|EGF33801.1| D-alanine-D-alanine ligase [Oxalobacteraceae bacterium IMCC9480]
          Length = 322

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 145/304 (47%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+EREVSL SG    +AL   G      D        LA  + D  F  LHG
Sbjct: 11  VGVLLGGRSAEREVSLMSGNGVLAALRSKGIDAHPFDPAERSLAELATEQFDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LELL IPYT SG++ASA+ +DK+ +K++  S  +P    ++++  T   
Sbjct: 71  RFGEDGTLQGALELLGIPYTGSGVMASAIGIDKVMTKRIWLSHDLPTPRFLVLDAQTPAD 130

Query: 121 -----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++K    GS++G  + K      +    +    +   +L E+++ G 
Sbjct: 131 VLDEVPEELGLPLMLKAPHEGSTIG--IAKVIVDADMHTGFALCAQYDSVVLAEEFISGR 188

Query: 176 ELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           E+T         A              Y YE KY S ++ ++ PA +  ++   +Q +A 
Sbjct: 189 EITIPVLGSGHGARALPIVEIRAPEGNYDYEHKYFSDDTVYLCPAPLADEVTATLQDIAV 248

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A  A+GC G  R D +        F LE+N  PGMT  S+ P  A  AG S+ +L + +
Sbjct: 249 RAFNAVGCTGWGRVDIMLRAGDDAPFLLEVNTSPGMTSHSLVPMAAKAAGISYEDLCVEI 308

Query: 293 VEDA 296
           +  A
Sbjct: 309 LSTA 312


>gi|326388921|ref|ZP_08210503.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
 gi|326206521|gb|EGD57356.1| D-alanine--D-alanine ligase [Novosphingobium nitrogenifigens DSM
           19370]
          Length = 313

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 119/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE  G KV++ID+ R +   LA   PD+ FN LHG
Sbjct: 8   VAVLMGGWSNERPVSLMSGNGVADALESRGHKVTRIDMGRDIAQRLAEAAPDVVFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +++L+ + YTHSG+ AS +++DK  +KQ +   G+P+    +V    +  
Sbjct: 68  TPGEDGTVQGMMDLMGLTYTHSGLTASVIAIDKELTKQALVPHGIPMPGGRIVKSEDIFV 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++  + +    + + +   W   D LL E Y+ G ELT
Sbjct: 128 RDPLPRPYVLKPVNEGSSVGVAIVTVEGNYGNPIGRETVGPWQAFDHLLAEPYIRGRELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V    S  +     PKS FY ++ KY+   + H+ PA IP +I +  + +A  AH+ +
Sbjct: 188 TAV-LGDSALLVTELRPKSGFYDFDAKYTDGMTDHICPADIPEEIAQACKDIALKAHRLL 246

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D       +F LE+N QPGMTP+S+ PE A   G  +  L+  +V +A
Sbjct: 247 GCRGTSRSDFRWDDEQGIDGLFLLEVNTQPGMTPLSLVPEQARALGMDYATLVEAIVAEA 306


>gi|332187083|ref|ZP_08388823.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
 gi|332012783|gb|EGI54848.1| D-alanine--D-alanine ligase family protein [Sphingomonas sp. S17]
          Length = 314

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 118/300 (39%), Positives = 176/300 (58%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG   A ALE AG +V++ID+ R V   L   +PDL FN LHG
Sbjct: 7   IAVLMGGWSAERPVSLMSGAGVADALERAGHRVTRIDMGRDVAARLVEAQPDLVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +L+L+ I YTHSG+  S +++DK+ +KQ +   G+P+    +V    + +
Sbjct: 67  SPGEDGTVQGMLDLMGIAYTHSGLATSVIAIDKVLTKQALVPHGIPMPGGRIVKSEELFA 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++    +         +  W   ++LL E Y+ G ELT
Sbjct: 127 GDPLPRPYVLKPVNEGSSVGVAIVTDTSNHGNPIARDVAGPWAEFEELLAEPYIRGRELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V             PK+ +Y ++ KY+   + HV PA+IP +I +  + LA  AH+ +
Sbjct: 187 TAV-LGNRALGVTELKPKNGWYDFDAKYTDGLTEHVCPAQIPDEIAEACKSLALEAHRIL 245

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG SRSDF +D       +F LE+N QPGMTP+S+ PE   + G  +  L+  +V++A
Sbjct: 246 GCRGASRSDFRWDDERGVDGLFLLEVNTQPGMTPLSLVPEQGRHVGMDYDTLVQAIVDEA 305


>gi|311104003|ref|YP_003976856.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
 gi|310758692|gb|ADP14141.1| D-alanine--D-alanine ligase B [Achromobacter xylosoxidans A8]
          Length = 316

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 151/304 (49%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLSELAAQGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            +GEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P         +    
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPDFELLDADTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      +++     ++L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKE--AYAAAARFDAEVLAEQFITGRELT 185

Query: 179 CGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             V      A              Y YE KY S ++ +  PA +P ++  EV  +A  A+
Sbjct: 186 VAVLGGGKTARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPATLPPEVAAEVAEIAVQAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++ +
Sbjct: 246 QALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVAILSE 304

Query: 296 ASCL 299
           A+C 
Sbjct: 305 AACK 308


>gi|77460892|ref|YP_350399.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf0-1]
 gi|123603343|sp|Q3K746|DDL_PSEPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|77384895|gb|ABA76408.1| D-alanine--D-alanine ligase B [Pseudomonas fluorescens Pf0-1]
          Length = 324

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 108/301 (35%), Positives = 164/301 (54%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG A  +AL+ AG     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLFGGLSAEREVSLKSGNAVLTALQSAGVDAFGIDVGADILQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE+  IPYT SGILASAL+MDK+R+KQV  + G+P      +      +
Sbjct: 80  RGGEDGSMQGLLEVAGIPYTGSGILASALAMDKLRTKQVWHTLGIPTPRHAVLRSEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 140 SAATELGFPLIVKPAHEGSSIGMAKVSSASELIDA--WKAASTYDSQVLVEQWIHGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P +  Y Y+ KY + ++ + +P  +     KE+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYIANDTQYRIPCGLDAAKEKELMDLTAQACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R+D + D    K ++LE+N  PGMT  S+ P  A  AG  F++L+L ++  AS 
Sbjct: 257 GIAGWGRADVMQDA-DGKFWFLEVNTAPGMTDHSLVPMAAKAAGLDFQQLVLAIL-AASV 314

Query: 299 L 299
            
Sbjct: 315 D 315


>gi|288939897|ref|YP_003442137.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
 gi|288895269|gb|ADC61105.1| D-alanine/D-alanine ligase [Allochromatium vinosum DSM 180]
          Length = 308

 Score =  201 bits (511), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 163/297 (54%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG ++ERE+SL SG+A   AL+  G  V  ID D ++   L     D AF +LHG
Sbjct: 15  VALLMGGQAAEREISLKSGRAVHEALQRLGVDVEPIDPDATLLERLRTGGYDRAFIILHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-D 119
             GEDG +Q  LE + +PYT SG+L SAL MDK R K   + CG+P    +L+   +   
Sbjct: 75  RGGEDGQIQGALETIGLPYTGSGVLGSALGMDKYRCKLAWAGCGLPTADFVLLRDESDLT 134

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  P +IKP+  GSS+G+  ++  + +       ++      +L E+++ G+ELTC
Sbjct: 135 AAAELGFPLMIKPVHEGSSIGMARVESVEGLERA--WRAAAEFDSLVLAERWIQGMELTC 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++G  +L    +  P +  Y YE KYS+ ++ +  P+ +  ++   ++ LA  A   +G
Sbjct: 193 AILGHEALPTIRLETPHAF-YDYEAKYSADSTRYHCPSGLDAEVEARLRALALEAFDVVG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G  R D + D  + + F LEIN  PGMT  S+ P  A  AG  F +L+  ++E +
Sbjct: 252 ASGWGRVDMMLDG-TGQPFLLEINTVPGMTDHSLVPMAARVAGIDFDDLVWRILETS 307


>gi|253988596|ref|YP_003039952.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253780046|emb|CAQ83207.1| D-alanine--D-alanine ligase [Photorhabdus asymbiotica]
          Length = 306

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L++AG     ID    +   L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGHAVLAGLKEAGIDAHPIDTKDFLVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++AS+LSMDK+R+KQ+    G+ V P + +N    + 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASSLSMDKLRTKQLWQGIGLTVSPYVAINLQQFEQ 124

Query: 121 QHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +           P ++KP   GSS+G+  + +   +   L    ++ +   LLIE++
Sbjct: 125 FTDLQLQEHVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EIAFRYDADLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD +L       P + FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LYGPEYTVAILGDTALPSI-RIQPAAIFYDYDAKYWSEETKYFCPSGLSDEKEQQLAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++++GC G  R D + D      + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 LKAYKSVGCCGWGRVDIMMD-SDGVFYLLEVNTSPGMTSHSLVPMAARQAGLNFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|295688573|ref|YP_003592266.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
 gi|295430476|gb|ADG09648.1| D-alanine/D-alanine ligase [Caulobacter segnis ATCC 21756]
          Length = 319

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 143/303 (47%), Positives = 198/303 (65%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL SG  CA ALE  G KV++ID    +  VL   KPDL FN LHG
Sbjct: 11  IAVLLGGPSSERKVSLVSGAECADALERLGAKVTRIDAGPDIAQVLTAAKPDLVFNALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L++PYTHSG+LASAL+MDK ++K V+++ GV V    L NR  +  
Sbjct: 71  EWGEDGCVQGVLETLKLPYTHSGVLASALAMDKAKAKAVLAAAGVVVPGGGLFNRHDVAR 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++K+  + P + + + SW  G+++++E Y+ G+EL   
Sbjct: 131 DHVLPPPYVVKPNAEGSSVGVFIVKEGANRPPEEVGAPSWTFGEEVMVEPYIRGLELAVA 190

Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           VMG+A+             + FY YE KYS   S HVLPA IP  +     R+A LAH A
Sbjct: 191 VMGEANGPRALAVTDIRASTGFYDYEAKYSEGGSIHVLPAPIPDGVRDRAMRMAELAHTA 250

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCR ++RSD  +D ++  +  LE+N QPGMTP S+ PE AA+ G  F +L+LW+VEDA 
Sbjct: 251 LGCRSVTRSDLRYDDINDILVLLEVNTQPGMTPTSLAPEQAAHVGIPFDQLVLWIVEDAY 310

Query: 298 CLR 300
             R
Sbjct: 311 ARR 313


>gi|317493277|ref|ZP_07951699.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918670|gb|EFV40007.1| D-alanine-D-alanine ligase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 306

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A    L +AG     +D+       L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAVLKGLIEAGIDAHPVDIKDFPATQLKDAGYDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+PV P + +       
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPVSPFVAISRAQFDE 124

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  + + + +  P ++KP + GSS+G+  +         L    ++ H D +L+E++
Sbjct: 125 GLTQEMLVALNALGLPLIVKPSREGSSVGMSKVSDASEFDDAL--VEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +G+  L    I  P   FY YE KY S  + +  P+ +  D  +E+  LA
Sbjct: 183 LSGPEYTVAFLGEEILPSIRIQAP-GVFYDYEAKYLSDKTEYFCPSGLSEDRERELAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++++ C G  R D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 RKAYKSLDCSGWGRVDVMMD-SDGEFYLLEVNTAPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|237749167|ref|ZP_04579647.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
 gi|229380529|gb|EEO30620.1| D-alanine-D-alanine ligase [Oxalobacter formigenes OXCC13]
          Length = 321

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 154/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S EREVSL SGKA   AL+  G      D        L   K D  F  LHG
Sbjct: 13  VGVLYGGKSGEREVSLMSGKAVHEALKSKGIDAHLFDTGTHTVAELEKEKFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L++PYT SG++ASA++MDK+ +K++  + G+P      +   T  +
Sbjct: 73  IYGEDGCMQGLLEELQVPYTGSGVMASAIAMDKIMTKRLWLAEGLPTPRYTELKANTDFN 132

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP   GS+LG+  +     +        +  H   +L E++++G+ELT
Sbjct: 133 EVVAKLGLPLIVKPACEGSTLGLTRVTDASQMKEAY--ELAATHDQSVLAEEFIEGMELT 190

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+              +     Y Y+ KY S  + ++ P  +  ++ K +Q+    ++
Sbjct: 191 CAVLERDGKPEALPMIRIIAPGANYDYQNKYFSDETKYLCPCGLDAELEKSIQQYVVQSY 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GCRG  R D +      K F LE+N  PGMT  S+ P  A  AG  + +L + ++  
Sbjct: 251 RALGCRGWGRVDVMLRSTDNKPFLLELNSSPGMTGHSLVPMAAKQAGLDYADLCVTLLAA 310

Query: 296 ASCL 299
           A+  
Sbjct: 311 ATLD 314


>gi|157828212|ref|YP_001494454.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165932915|ref|YP_001649704.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
 gi|166198503|sp|A8GRC1|DDL_RICRS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083047|sp|B0BWS2|DDL_RICRO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157800693|gb|ABV75946.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908002|gb|ABY72298.1| D-alanine--D-alanine ligase [Rickettsia rickettsii str. Iowa]
          Length = 321

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 187/297 (62%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGGLPGLLNIMRIPYTHSGVLSSALAFDKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLTQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY++  + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTAGFADHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LEIN  PGM  +SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEINTHPGMMSLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|296101255|ref|YP_003611401.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055714|gb|ADF60452.1| D-alanine--D-alanine ligase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 306

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L +AG     +D        L  +  D  F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREAGVNAHLVDPKEVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREFEM 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + K   +   L  + ++ H +++LIE++
Sbjct: 125 GLQDSVNARIAELGLPVIVKPSREGSSVGMSKVDKADDLSSAL--AVAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGLEAEREADLQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWHVLGCSGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|30248997|ref|NP_841067.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
 gi|39930869|sp|Q82VS0|DDL_NITEU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30138614|emb|CAD84905.1| D-alanine--D-alanine ligase [Nitrosomonas europaea ATCC 19718]
          Length = 305

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A  +AL+ +       D        L     D  F  LHG
Sbjct: 9   VAVLLGGRSAEREISLRSGQAVLAALQRSRVNAHAFDPAGQPLENLLQQGFDRVFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LEL+E+PYT SGILASAL+MDK R+K +  + G+     ++++  +   
Sbjct: 69  RYGEDGSVQGALELMELPYTGSGILASALAMDKWRTKMIWQAAGINTPDYVMLDASSRFR 128

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP + GS+LG+  +  +Q         ++  +   +L EQ++ GIELT
Sbjct: 129 DVADRLGLPLIIKPAREGSTLGLNKVDNEQDFRSAY--QAAAEYDSLVLAEQFIQGIELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +          Y Y+ KY S ++ +  P+ +   +   +Q  A  AH+ +
Sbjct: 187 AAILDDMPLPLV-RIDVAEGLYDYQAKYFSESTRYTCPSGLSAALTTRIQEQALYAHRIL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E  SC
Sbjct: 246 GCTGWSRVDLILDE-NEQPFFLETNTSPGMTDHSLVPMAAKAAGISFDELVVQILEL-SC 303

Query: 299 L 299
            
Sbjct: 304 E 304


>gi|237755501|ref|ZP_04584122.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
 gi|237692325|gb|EEP61312.1| D-alanine--D-alanine ligase B [Sulfurihydrogenibium yellowstonense
           SS-5]
          Length = 300

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 157/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA   AL   G+     D+         +   KPDLAF VL
Sbjct: 4   IALLYGGYSREREISIKSGKAVEKALNQLGYTYKVFDIIERDKFIKEILEYKPDLAFIVL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +QAILE L IPYT S +  S ++MDK+ +K  + + G+P    I       
Sbjct: 64  HGKGGEDGTIQAILEFLGIPYTGSDMKTSVIAMDKVLTKMYLKNFGIPTPDWIFFTEEKE 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+K    GSS+G+ ++   Q     + +       D++L+E+++ G ELT
Sbjct: 124 ALNYRPDFPVVVKAPTEGSSIGVYIVNNQQEYENAVKEVFDL--DDKVLVEKFIKGRELT 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D   D+ E+ V +   Y +  KY +  + ++ PA++  D+YK +Q L    ++ +
Sbjct: 182 VSILDDEVFDIVEVVVSEGF-YDFNNKYITGKTQYICPAQLDEDVYKNIQDLGHKVYKLL 240

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G +R D +          LE+N  PGMT  S+ P+ A   G +F +L+  +++++
Sbjct: 241 NCKGPARVDIIL-ENDNNPHVLEVNTIPGMTEFSLLPKAALARGITFIQLVEKIIKNS 297


>gi|288958926|ref|YP_003449267.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
 gi|288911234|dbj|BAI72723.1| D-alanine-D-alanine ligase [Azospirillum sp. B510]
          Length = 335

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 133/305 (43%), Positives = 203/305 (66%), Gaps = 8/305 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           +AVLMGG S+EREVSL SG   A ALE+ G++V+ IDV R +G     L + +PD+ FN 
Sbjct: 29  VAVLMGGWSAEREVSLVSGAGVAKALEEEGYRVTAIDVQRDLGGLMQALTNPRPDVVFNA 88

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRF 116
           LHG  GEDG +Q +LE L +PYTHSG+ A+A++MDK  +K+++ + G+     ++     
Sbjct: 89  LHGRGGEDGTIQGVLEFLGLPYTHSGVQAAAIAMDKAMTKRLLDTVGIRSPKGMVLSRGE 148

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                H +  PY++KP+  GS++G+ ++++ Q+ P+    S     G+++L+E+++ G E
Sbjct: 149 IAGGVHPMPAPYIVKPVDEGSTVGVTLVREGQNSPVGDDGSFGATFGERVLVEEFIPGRE 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GVMGD +L VTEI    +  Y Y  KYS+ ++ H LPA IP  + +E +R+A LAHQ
Sbjct: 209 LTVGVMGDRALTVTEIVFQ-AQVYDYTAKYSAGHAVHTLPAAIPEAVAEEAKRVAVLAHQ 267

Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +GCRG+SRSDF +D     +  +++LEIN QPGMTP+S+ PE AA+ G ++  L+ W+V
Sbjct: 268 TLGCRGVSRSDFRWDDSRPGTDGLYFLEINNQPGMTPLSLVPEQAAHVGITYGALVGWLV 327

Query: 294 EDASC 298
           E+A+C
Sbjct: 328 ENAAC 332


>gi|53803430|ref|YP_114840.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
 gi|81681291|sp|Q604W0|DDL_METCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53757191|gb|AAU91482.1| D-alanine--D-alanine ligase [Methylococcus capsulatus str. Bath]
          Length = 309

 Score =  201 bits (510), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 156/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ERE+SL SGKA   AL   G     IDV R +   L   + D  FNV+HG
Sbjct: 14  VAVLMGGSAAEREISLKSGKAVLEALRSGGIDAEGIDVGRDLIAPLLERRFDRVFNVIHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG++Q  L  L +P T SG+LASALSMDK+R+K   +  G+P  P +         
Sbjct: 74  RGGEDGVLQGALACLRVPCTGSGVLASALSMDKLRTKLCWTGAGLPTPPWLRLDSPDDLE 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P ++KP + GSS+G+      + +        +  +G  +  E+++DG+E T
Sbjct: 134 RCRQALGFPVIVKPAEEGSSIGMSRAATAEELAQA--WERASGYGCAVFAERWIDGVEYT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++    L +  +  P +  Y ++ KY +  + +  P  +      E+Q L   A Q +
Sbjct: 192 GGMLKGVPLPLIRLETPHAF-YDFDAKYRADTTRYHCPCGLDTGREAELQALVLRACQIV 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R D L D  S + + +E+N  PGMT  S+ P  A  AG  F+EL+  ++E +
Sbjct: 251 GVSGWGRVDLLVD-RSGQPWLIEVNTVPGMTDHSLVPMAAKAAGIDFQELVWHILETS 307


>gi|188532904|ref|YP_001906701.1| D-alanine--D-alanine ligase [Erwinia tasmaniensis Et1/99]
 gi|229485955|sp|B2VD93|DDL_ERWT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188027946|emb|CAO95803.1| D-alanine-D-alanine ligase [Erwinia tasmaniensis Et1/99]
          Length = 306

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     ID+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLKEAGIDAHAIDIRDFPAMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD 
Sbjct: 65  RGGEDGTLQGVLEFLAIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  + +   +   L    ++   D++L+E +
Sbjct: 125 GLDAQLMTSIDALGLPLFVKPSREGSSVGISRVNQASELQAAL--QEAFRFDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L         S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVIGTDILPSI-RIQTASEFYDYDAKYLSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGQFYLLEVNTSPGMTSHSLVPMAANQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|254460833|ref|ZP_05074249.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2083]
 gi|206677422|gb|EDZ41909.1| D-alanine--D-alanine ligase [Rhodobacteraceae bacterium HTCC2083]
          Length = 292

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 137/298 (45%), Positives = 190/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVS SSG+ACA+AL + G++V+++D    +   L  + PD+ FN LHG  GE
Sbjct: 1   MGGPSAEREVSFSSGRACAAALREHGYQVTEMDAGADLATRLIAIAPDVVFNALHGRLGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L+IPYTHSG+LASAL+MDK RSK+V +  G+P+  SI+V    + ++H++
Sbjct: 61  DGCVQGVLEWLQIPYTHSGVLASALAMDKQRSKEVFAQVGLPIVKSIIVPAADVRARHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             PYV+KP   GSS+G+ ++ +  + P  L  +      + +++E +  G ELT  VMGD
Sbjct: 121 DAPYVVKPNSEGSSVGVYLVNEAANGPPQLDGTMP----EMVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HV+PA+IP +I+      A  AH+A+GCRG+S
Sbjct: 177 RPLTVTDIL--TDGWYDYDAKYKEGGSRHVVPAQIPQEIWDACMDYAVRAHEALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 RTDFRWDESRGLAGLILLETNTQPGMTATSLSPEQAQAIGMSFSELCSWMVEDASCNR 292


>gi|146310302|ref|YP_001175376.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
 gi|145317178|gb|ABP59325.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 306

 Score =  200 bits (509), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL+SG A  +AL + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLMGGTSAERDVSLNSGAAVLAALREGGVNAHPVDPKDIDVTRLKEMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + V R     
Sbjct: 65  RGGEDGTLQGLLDLIGMPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAVTRREFES 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       ++ P ++KP + GSS+G+  + K   +   L  + ++ H +++LIE++
Sbjct: 125 GLEVGVNQRIEQLALPVIVKPSREGSSVGMSKVDKADDLTSAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  P+ +  +  +E++ L 
Sbjct: 183 LGGPEFTVAMLGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEREEELKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMQD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|315633819|ref|ZP_07889108.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
 gi|315477069|gb|EFU67812.1| D-alanine-D-alanine ligase B [Aggregatibacter segnis ATCC 33393]
          Length = 313

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 164/303 (54%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 14  IAVLLGGTSAEREVSLNSGTAVLNALRKQGYDAHPIDPKEFPVATLKEQGFDRVFNILHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V      +
Sbjct: 74  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTVENRAN 133

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K    +   +    +      +LIE+++ G
Sbjct: 134 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAIAELESAV--DFALKFDRTVLIEEWLAG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L      VP+ +FY Y+ KY S N+ +  PA +     +E++ L   A
Sbjct: 192 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSDKREQELRHLVKQA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 251 YDVVGCRGWSRIDVIADAEGN-FRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVERILE 309

Query: 295 DAS 297
            ++
Sbjct: 310 LSA 312


>gi|302391535|ref|YP_003827355.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
 gi|302203612|gb|ADL12290.1| D-alanine/D-alanine ligase [Acetohalobium arabaticum DSM 5501]
          Length = 311

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/308 (35%), Positives = 178/308 (57%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV+ GG S ER++SL +GKA   ALE  G  V  +D +  +    L   + D+AF  LH
Sbjct: 5   VAVIRGGRSKERDISLKTGKAVYEALETEGVDVIALDPEEENFYQQLTTEEIDVAFIALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q + E+++IPYT SG+LAS+L+MDK+ SK++    GV      +++R   D
Sbjct: 65  GRYGEDGTIQGLFEMMDIPYTGSGVLASSLAMDKIISKKLFQQEGVLTPEFKVISRNNWD 124

Query: 120 S---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +  +  P V+KP   GSSLG+ +IKK +++   +  +    + +++L+E+
Sbjct: 125 QQAEKLLTELKIELDLPVVVKPALEGSSLGLSIIKKRENLATAVDTAF--EYDNEVLVEK 182

Query: 171 YVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           Y+ G E+T G+    D S+       PK+  Y +E KY+   +  V+PA++  +IY + Q
Sbjct: 183 YIAGKEITIGILGNQDLSVLPIIEIKPKTGAYDFEAKYTKGMTEFVIPAQLEEEIYNQAQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A  A++ + C G++R+D +      K + LE+N  PGMT  S+ P+ A  AG  F EL
Sbjct: 243 KIANKAYRVLKCSGMARADLIVSKE-GKPYVLEVNTIPGMTETSLLPQAAQAAGIDFPEL 301

Query: 289 LLWMVEDA 296
           +L ++E A
Sbjct: 302 VLEILEYA 309


>gi|293391360|ref|ZP_06635694.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290951894|gb|EFE02013.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 309

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 108/303 (35%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKIFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ SAL+MDKMR+K +  + G+PV    +V      +
Sbjct: 70  RGGEDGTMQGLLEQIGVPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K    +   +    +    + +LIE+++ G
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKSVDELESAV--DFALKFDNTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L      VP+ +FY Y+ KY S N+ +  PA +  +  +E+ RL   A
Sbjct: 188 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELHRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|226943455|ref|YP_002798528.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
 gi|226718382|gb|ACO77553.1| D-alanine--D-alanine ligase [Azotobacter vinelandii DJ]
          Length = 315

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL+ AG     IDV   +   L   + D AF VLHG
Sbjct: 17  VAVLFGGKSAERAVSLKSGQAVLEALQSAGVDAFGIDVGDDLLERLGRERIDRAFIVLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT SG+LASAL+MDK+R+KQV  S G+P     +    +   
Sbjct: 77  RGGEDGSMQGLLECVGIPYTGSGVLASALAMDKLRTKQVWQSLGLPTPRHAVPTSESDCR 136

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  +     +       S+ +H  Q+L+EQ++ G E T
Sbjct: 137 AAARDLGFPLIVKPAHEGSSIGMAKVNDIDELIAA--WLSARSHDPQVLVEQWIQGPEFT 194

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L    +  P S  Y Y+ KY + ++ + +P  +     +E++ L   A +A+
Sbjct: 195 VALLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLDSSKEEELKALCARACEAV 253

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 254 GVQGWARVDVMQDAE-GRFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAVLADSVE 312

Query: 299 LR 300
            R
Sbjct: 313 AR 314


>gi|306843225|ref|ZP_07475836.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306286590|gb|EFM58167.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 308

 Score =  200 bits (509), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 167/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +LA LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASILAELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKGRAKTVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWRYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|261345642|ref|ZP_05973286.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
 gi|282566124|gb|EFB71659.1| D-alanine--D-alanine ligase B [Providencia rustigianii DSM 4541]
          Length = 306

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 115/306 (37%), Positives = 162/306 (52%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTQNFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P I +NR    +
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYISLNRQKYTN 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +    ++P  +    ++   D LLIE++
Sbjct: 125 IKKEQLAQQVKHLGLPLIVKPSLEGSSVGMSKVDSLDALPEAI--ELAFRFDDTLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L       P   FY YE KY S  + +  P+ +      E+  +A
Sbjct: 183 LSGPEYTVAVLGDNVLPSI-RIQPPGVFYDYEAKYLSDETQYFCPSGLDSQREAELADIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    K + LE+N  PGMT  S+ P  A  AG  F +L+  
Sbjct: 242 MQAYQAVGCRGWGRVDVMQD-SDGKFYLLEVNTSPGMTSHSLVPMAARQAGLDFSQLVAR 300

Query: 292 MVEDAS 297
           ++E AS
Sbjct: 301 ILELAS 306


>gi|261867482|ref|YP_003255404.1| D-alanine--D-alanine ligase [Aggregatibacter actinomycetemcomitans
           D11S-1]
 gi|261412814|gb|ACX82185.1| D-alanine--D-alanine ligase B [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 309

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGEAVLNALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V      +
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTTENRVN 129

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K    +   +    +    + +LIE+++ G
Sbjct: 130 LNPESVVKKLGLPLMVKPSLEGSSVGLTKVKAVDELESAV--DFALKFDNTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L      VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL   A
Sbjct: 188 DEFTVPVLDNEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLSEEREQELRRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFAQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|58038646|ref|YP_190610.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
 gi|81352633|sp|Q5FUJ2|DDL_GLUOX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58001060|gb|AAW59954.1| D-alanine--D-alanine ligase [Gluconobacter oxydans 621H]
          Length = 303

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 129/303 (42%), Positives = 187/303 (61%), Gaps = 6/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVL+GG SSER VSL SG+A   AL + G  V+ IDV   +   +A LK   PD+ FN 
Sbjct: 3   VAVLLGGTSSERPVSLVSGEAAIEALREKGHDVTPIDVGPDIATTIASLKAAAPDVVFNA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +LE L +PYTHSGI ASA++MDK  ++ ++++ G+PV    +V    
Sbjct: 63  LHGPRGEDGAIQGVLEWLGLPYTHSGIRASAVAMDKGATRILLAAAGLPVAQGRVVTVEE 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYVIKP+  GSS+G+ +++   +   ++ ++     G + L+E ++ G EL
Sbjct: 123 LAEADPLPAPYVIKPVAEGSSVGVEIVRTGDNRRAEIARTW--RFGKEALVESFIPGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T GVMGD +L VT+I   ++  FY +E KY +  S HV+PA++P  +       A  AHQ
Sbjct: 181 TAGVMGDRALAVTDILPSETAAFYDFEAKYKAGGSRHVVPAELPQAVTDRALDYALRAHQ 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC+G SR+DF +D  +  +  LE+N QPGMTP S+ PE AAY G S+ EL  WMV +A
Sbjct: 241 TLGCQGASRTDFRYDEGTDTLVILEVNTQPGMTPTSLLPEQAAYCGISYPELCDWMVREA 300

Query: 297 SCL 299
              
Sbjct: 301 LAR 303


>gi|270263961|ref|ZP_06192229.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
 gi|270042154|gb|EFA15250.1| D-alanine--D-alanine ligase [Serratia odorifera 4Rx13]
          Length = 306

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     ID+       L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR     
Sbjct: 65  RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRLQYAG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L     + H D +L+E++
Sbjct: 125 AEKQSLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY Y+ KY S ++ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLGAEQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|254719459|ref|ZP_05181270.1| D-alanine--D-alanine ligase [Brucella sp. 83/13]
 gi|265984465|ref|ZP_06097200.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306839238|ref|ZP_07472055.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|264663057|gb|EEZ33318.1| D-alanine-D-alanine ligase B [Brucella sp. 83/13]
 gi|306405785|gb|EFM62047.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 308

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +LA LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASILAELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FG+DG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGKDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|183599899|ref|ZP_02961392.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
 gi|188022174|gb|EDU60214.1| hypothetical protein PROSTU_03420 [Providencia stuartii ATCC 25827]
          Length = 306

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     ID      + L     D  F  LHG
Sbjct: 5   VAVLFGGTSAEREVSLQSGNAVLAGLRQAGIDAHPIDTKDFPVVTLKDAGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + +++F   S
Sbjct: 65  RGGEDGTIQGMLEFLGLPYTGSGVMASALSMDKLRTKQLWEGAGLAVSPYVSLSKFEFSS 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +     +   L  + ++   + +LIE++
Sbjct: 125 LKTEKIEELVAYLGLPLIVKPSLEGSSVGMSKVDNLGDLSAAL--ALAFRFDETVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+ +L       P   FY YE KY S  + +  P+ +      ++ +LA
Sbjct: 183 LSGPEYTVAVLGEQTLPSI-RIQPPGVFYDYEAKYLSDETQYFCPSGLDAGSEAQLSQLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 MRAYQAVGCRGWGRVDVMQD-SDGQFYLLEVNTSPGMTSHSLVPMAARQAGMDFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|154244282|ref|YP_001415240.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
 gi|229486024|sp|A7IC40|DDL_XANP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154158367|gb|ABS65583.1| D-alanine--D-alanine ligase [Xanthobacter autotrophicus Py2]
          Length = 306

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 165/303 (54%), Positives = 215/303 (70%), Gaps = 4/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG ACA ALE AG++V+++DV R V  VL HLKPD+AFNVLHG
Sbjct: 5   VAVLMGGWSSEREVSLRSGAACAGALEAAGYRVTRVDVGRDVAEVLTHLKPDVAFNVLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q ILE+L IPY+HSG+LASAL+MDK +++ ++++ GVPV    LV+R     
Sbjct: 65  QPGEDGTIQGILEILRIPYSHSGVLASALAMDKAQARIMLAAAGVPVAKGGLVSRAEAAK 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++  PYV+KP  GGSS+G+ ++++DQ+ P   L    W HG+ LL E+++ G+ELTC 
Sbjct: 125 AHIMPTPYVLKPNAGGSSVGVFIVREDQAHPPQELTREDWPHGENLLAEEFIPGLELTCA 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VMGD  LDV         FY YE KY+   S H+LPA+I  +IY+ VQ L+  AH+A+GC
Sbjct: 185 VMGDKVLDVI-EIESTQKFYDYESKYAPGGSQHILPARILPEIYQRVQMLSLTAHRALGC 243

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           RG+SRSDF FDP       +  LE+N QPGMT  S+ PE+AA+AG SF EL+ WMVEDAS
Sbjct: 244 RGVSRSDFRFDPSRGDGSGLICLEVNTQPGMTETSLVPELAAHAGISFGELVTWMVEDAS 303

Query: 298 CLR 300
             R
Sbjct: 304 LER 306


>gi|157364709|ref|YP_001471476.1| D-alanyl-alanine synthetase A [Thermotoga lettingae TMO]
 gi|167012332|sp|A8F8C8|DDL_THELT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157315313|gb|ABV34412.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 296

 Score =  200 bits (508), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 159/299 (53%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +AVL+GGIS ER +SL SG+    AL+  G  V  IDVD +   +   LK  ++ FN LH
Sbjct: 3   IAVLLGGISRERPISLKSGENVLKALKKLGHDVVPIDVDENFLEIAPKLKEFEVVFNALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+FGEDG VQAIL+ + + YT S +LASA+  DK+ + +V+         +I        
Sbjct: 63  GHFGEDGTVQAILDWVGVSYTGSKVLASAICFDKVMTYRVLDGYVNFPEYTI---VKKPV 119

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P VIKP K GSS+G+ +      +  DL +       ++++I++Y++G ELT 
Sbjct: 120 KESPYGFPCVIKPRKEGSSIGVHICDNSNQLYNDLSEELKKY--NEMMIQRYIEGRELTV 177

Query: 180 GV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +  +G   +       PK  FY Y  KY S  +  +LPA + ++ Y++V   +  A + 
Sbjct: 178 SILEIGKPQILPVLELKPKRRFYDYTAKYVSGMTEFILPAPLSVEEYQKVANSSLRAFEL 237

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            GC G +R D +        + LE+N  PG+T +S  P  A  AG SF EL+  +++ A
Sbjct: 238 CGCEGFARVDGIL--KDNVFYVLELNTIPGLTDLSDMPASAKAAGMSFEELVDAIIQTA 294


>gi|37527516|ref|NP_930860.1| D-alanine--D-alanine ligase [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|39930824|sp|Q7N149|DDL_PHOLL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|36786951|emb|CAE16025.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 306

 Score =  200 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     +D        L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLREAGIDAHPVDTKDFPVTQLKEAGFEKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE L++PYT SG++ASALSMDK+R+KQV    G+ V P + +N      
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALSMDKLRTKQVWQGIGLTVSPYVSINSQQVER 124

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    +  P ++KP   GSS+G+  + +   +   L   +++ +   LL+E++
Sbjct: 125 LTDSQLQEYVADLGLPLIVKPSLEGSSVGMTKVNEISELRGAL--EAAFRYDVDLLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD +L       P + FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LHGPEYTVAILGDTALPSI-RIQPAAVFYDYDAKYWSEETQYFCPSGLSDEKEQQLAELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+Q++GC G  R D + D      + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAYQSVGCSGWGRVDVMMDT-DGDFYLLEVNTSPGMTSHSLVPMAARQAGLSFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|147677725|ref|YP_001211940.1| D-alanine--D-alanine ligase [Pelotomaculum thermopropionicum SI]
 gi|190359201|sp|A5D2F9|DDL_PELTS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146273822|dbj|BAF59571.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Pelotomaculum thermopropionicum SI]
          Length = 318

 Score =  200 bits (507), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 109/308 (35%), Positives = 172/308 (55%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A  +AL+   +   +IDV   V   +   + DLAF  LHG
Sbjct: 5   VGVLMGGRSSEREVSLKTGEAVYNALKVKNYLAVKIDVGLDVVERIKEERIDLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
            +GEDG +Q +LE+L+IPYT SG+LASAL+MDK  +K+++   G+P  P +LV +     
Sbjct: 65  RYGEDGTIQGLLEMLDIPYTGSGVLASALAMDKAATKKIIQYEGLPTPPFMLVEKKEALK 124

Query: 118 -------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+K    GS++G+  + K++ +   L    ++++    L+EQ
Sbjct: 125 ESLQACSERICREMGLPLVVKAPTQGSTIGMSFVHKEEDMAGAL--ELAYDYDPVALVEQ 182

Query: 171 YVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ G E+T       +         V  +  Y Y+ KY++  S H++P +IP      ++
Sbjct: 183 FIRGTEVTASILGNEEPVALPLIEIVSATGVYDYKAKYTAGMSDHIIPPRIPEKQQNAIK 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +LA    +++GCRG++R DF+ D      F LE+N  PGMT  S+FP+ A  AG  F +L
Sbjct: 243 KLAVSTFKSLGCRGLARVDFIVDKQGN-PFILEVNTIPGMTATSLFPDAARAAGIEFPDL 301

Query: 289 LLWMVEDA 296
           +  +VE A
Sbjct: 302 IEKLVELA 309


>gi|306844327|ref|ZP_07476919.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275399|gb|EFM57140.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 308

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 168/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  VLA LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GAACATTLEECGYRVTRIDVDRNVASVLAELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|83592283|ref|YP_426035.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
 gi|123767104|sp|Q2RVU7|DDL_RHORT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83575197|gb|ABC21748.1| D-alanine--D-alanine ligase [Rhodospirillum rubrum ATCC 11170]
          Length = 302

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 131/302 (43%), Positives = 193/302 (63%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VLMGG S+ER VSL+SG A   AL  AG+ V+ +DV R V   +A L   +PD+ FN 
Sbjct: 5   VTVLMGGFSTERAVSLNSGAAAGEALRQAGYAVTLLDVGRDVAAFIAALTQTRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+++ +PYTHSG LASA++MDK  +K V     +PV P ++ +R +
Sbjct: 65  LHGRFGEDGAIQGILDIMALPYTHSGRLASAIAMDKPSAKLVFERFAIPVAPHVVADRAS 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + ++  ++ PYV+KPL  GSS+G+ ++               W +G Q+++E+++ G EL
Sbjct: 125 VLAETAMARPYVVKPLDQGSSVGVTIVTS--ETNDLPFSRDDWPYGRQVMVERFIPGREL 182

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T GVMGD +L      V    FY Y+ KY+   S H++PA +  +++ + Q L+ LAHQA
Sbjct: 183 TVGVMGDKAL-GVTEIVTDHRFYDYDAKYAQGGSRHIVPAPVAPEVFAQAQELSVLAHQA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GCRG+SR+D  FD  +  ++ LE+N QPGMT  S+ PE A +AG SF +L+ W+VE A 
Sbjct: 242 LGCRGVSRADLRFDGET--LYMLEVNTQPGMTDTSLVPEQALHAGISFPDLVTWLVETAQ 299

Query: 298 CL 299
           C 
Sbjct: 300 CD 301


>gi|317402453|gb|EFV83022.1| D-alanine-D-alanine ligase [Achromobacter xylosoxidans C54]
          Length = 316

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 150/304 (49%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHQALLSAGVDAHLFDTGERSLAELAAEGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            FGEDG +Q  LELL IPYT SG LASAL+MDK  +K+V    G+P         +    
Sbjct: 68  RFGEDGSIQGALELLGIPYTGSGPLASALAMDKTMTKRVWLQHGLPTPEFELLDADTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      + +     ++L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAY--ALAAKFDAEVLAEQFIQGRELT 185

Query: 179 CGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             +      A              Y YE KY S ++ +  PA +P  + +EV  +A  A+
Sbjct: 186 VAILGGGKSARALPVIEIAAPGGNYDYEHKYFSDDTQYFCPAALPPAVAEEVADIAVRAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ EL + ++ D
Sbjct: 246 RALGCEGWGRADFMLDA-DNRPWLLEMNTSPGMTSHSLVPMAARATGMSYAELCVAILAD 304

Query: 296 ASCL 299
           ASC 
Sbjct: 305 ASCK 308


>gi|149186199|ref|ZP_01864513.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
 gi|148830230|gb|EDL48667.1| D-alanyl-D-alanine ligase [Erythrobacter sp. SD-21]
          Length = 329

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 118/307 (38%), Positives = 179/307 (58%), Gaps = 9/307 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE+ G KV++ID+DR V   +A +KPD+ FN LHG
Sbjct: 13  IAVLMGGWANERPVSLMSGEGVAKALEERGHKVTRIDMDRQVAARIAEVKPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ + YTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 73  VPGEDGTVQGMLDLMGVAYTHSGLATSVIAIDKQLTKQALVPHGIPMPGGRIVKSADLFD 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELT 178
           +  +  PYV+KP+  GSS+G+ ++  + +    + +S+     D  +LL E Y+ G E+T
Sbjct: 133 RDPLPRPYVLKPVNEGSSVGVAIVTDESNHGNPISRSAKGPWQDFAELLAEPYIKGREMT 192

Query: 179 ---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                              PKS FY ++ KY+   + HV PA IP  I      +A  AH
Sbjct: 193 AAVVDFPEGPRALAVTELKPKSGFYDFDAKYTDGLTDHVCPADIPEHIRDLCLEIALKAH 252

Query: 236 QAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +GC+G SR+DF +D    +  +F LE N QPGMTP+S+ PE A +AG  +  L+  ++
Sbjct: 253 KVLGCKGTSRTDFRWDEEEGEDGLFVLETNTQPGMTPLSLVPEQAKFAGIEYGALVETII 312

Query: 294 EDASCLR 300
             A+ LR
Sbjct: 313 --AAALR 317


>gi|159044960|ref|YP_001533754.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
 gi|189083041|sp|A8LS60|DDL_DINSH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157912720|gb|ABV94153.1| D-alanine--D-alanine ligase [Dinoroseobacter shibae DFL 12]
          Length = 308

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 140/302 (46%), Positives = 188/302 (62%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++MGG SSER VSLSSG+ C +AL   GF+V  +D    +   L  L+PD+ FN LHG
Sbjct: 13  VAMMMGGTSSERAVSLSSGRECGAALRAEGFEVIDLDAGPDLAARLEDLRPDVVFNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L IPYTHSG+LASAL+MDK R+K   ++ G+P+  S L  R  + +
Sbjct: 73  RWGEDGCVQGLLEWLRIPYTHSGVLASALAMDKERTKAAYAAAGLPIATSGLFTRAQIAA 132

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +H++ PPYVIKP   GSS+G+ ++ +      +L         D L++E +V G ELT  
Sbjct: 133 RHVMPPPYVIKPYNEGSSVGVYLVPEGAEAAPELADDLP----DTLMVEAFVPGRELTVT 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD +L VT+I      +Y Y+ KY    S HVLPA++P D+Y      A  AH+ +GC
Sbjct: 189 VQGDRALCVTDIV--TEGWYDYDAKYVPGGSRHVLPAEVPGDVYDACMAHAETAHRVLGC 246

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           RGISR+DF +DP      +  LE N QPGMTP S+ PE A + G  F  L  W+VEDASC
Sbjct: 247 RGISRTDFRWDPRRSLDGLALLETNTQPGMTPTSLTPEQAQHVGLGFGALCRWIVEDASC 306

Query: 299 LR 300
            R
Sbjct: 307 DR 308


>gi|330501926|ref|YP_004378795.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
 gi|328916212|gb|AEB57043.1| D-alanine--D-alanine ligase [Pseudomonas mendocina NK-01]
          Length = 313

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 166/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  SAL+ AG     IDV       L   K D AF VLHG
Sbjct: 15  VAVLFGGKSAEREVSLKSGNAVLSALQAAGVDAFGIDVGDDFLARLNSEKIDRAFIVLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P      +       
Sbjct: 75  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWHSLGLPTPRHAVLTSQADCK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  ++  +++        +  +  Q+L+EQ++ G E T
Sbjct: 135 AAATELGFPLIVKPAHEGSSIGMAKVESVEALVAA--WQDAARYDSQVLVEQWIAGPEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P +  Y Y+ KY + ++ + +P  +  +   E++ L   A +A+
Sbjct: 193 IAVLRGEVLPPIGLGTPHTF-YDYDAKYLADDTQYRIPCGLSAEKEAELKSLTARACEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G +R+D + D  S + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 252 GTQGWARADVMQDA-SGQFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVE 310

Query: 299 LR 300
            R
Sbjct: 311 AR 312


>gi|296284494|ref|ZP_06862492.1| D-alanine--D-alanine ligase [Citromicrobium bathyomarinum JL354]
          Length = 321

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 126/304 (41%), Positives = 183/304 (60%), Gaps = 5/304 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG ++ER VSL SG+  A ALE  G  V++ID+DR V   +A  KPD+ FN LHG
Sbjct: 9   VAVLMGGWANERPVSLMSGEGVAKALEARGHTVTRIDMDRQVAARIAEAKPDIVFNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+L+ +PYTHSG+  S +++DK  +KQ +   G+P+    +V    +  
Sbjct: 69  VPGEDGTVQGMLDLMGVPYTHSGLATSVIAIDKQLTKQALVPRGIPMPGGRIVKTDDLYE 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELT 178
              +  PYV+KP+  GSS+G+ ++  + +            W    +LL E Y+ G ELT
Sbjct: 129 GDPLPRPYVLKPVNEGSSVGVAIVTDESNYGNPIARDAKGPWQEFPELLAEPYIRGRELT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G  +L VTE+ V +S FY +E KY+   + HV PA+IP D+ +   R A  AH+ +
Sbjct: 189 TAVVGGKALGVTELIV-ESGFYDFENKYTDGRTRHVCPAEIPEDVAEACLRYALEAHRIL 247

Query: 239 GCRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G SR+DF +D       +F LE N QPGMTP+S+ PE A Y G S+ +L+  ++ DA
Sbjct: 248 GCKGTSRTDFRWDDQQGLDGLFVLETNTQPGMTPLSLVPEQAKYCGMSYEDLVETIIADA 307

Query: 297 SCLR 300
              R
Sbjct: 308 LADR 311


>gi|293392857|ref|ZP_06637175.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
 gi|291424716|gb|EFE97927.1| D-alanine-D-alanine ligase B [Serratia odorifera DSM 4582]
          Length = 306

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  + L +AG     ID        L        F  LHG
Sbjct: 5   VAVLMGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDTRDFPLAQLKAQGFSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L++PYT SG++ASAL+MDK R+K V  S G+P+ P + ++R     
Sbjct: 65  RGGEDGTLQGMLEFLDLPYTGSGVMASALTMDKWRTKMVWQSMGLPIAPYVALHRAEFVG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +           +  P ++KP + GSS+G+  + +   +   L    ++ H D +L+E++
Sbjct: 125 EAKSQLLASVEALGLPLIVKPSREGSSVGMSKVSEFGELVAAL--DEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  +       P   FY Y+ KY S ++ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAFLGDQLMPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLSAEQESELAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A   G  F +L+  
Sbjct: 242 ARAYRGLDCSGWGRVDVMQD-NDGSFYLLEVNTSPGMTSHSLVPMAARQFGLDFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|163855004|ref|YP_001629302.1| D-alanine--D-alanine ligase [Bordetella petrii DSM 12804]
 gi|190359114|sp|A9I4V9|DDL_BORPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|163258732|emb|CAP41031.1| D-alanine-D-alanine ligase [Bordetella petrii]
          Length = 326

 Score =  200 bits (507), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 146/304 (48%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ER+VSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 18  VGVLYGGRSAERDVSLMSGKGVHQALLSAGVDAHLFDTGERTLAELAAAGFDRVFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            +GEDG +Q  LELL +PYT SG +AS+LSMDK+ +K+V    G+               
Sbjct: 78  RYGEDGTLQGALELLGLPYTGSGPMASSLSMDKIMTKRVWLQHGLRTPAFEVLDAQAELR 137

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +      + +    D++L EQ++ G ELT
Sbjct: 138 TVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKE--GYAQAAKFDDEVLAEQFIAGRELT 195

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                    A        V     Y YE KY S  + +  PA +P  +  EV  LA  A+
Sbjct: 196 VAVLGTGAAAHALPVIEIVAPGGNYDYEHKYFSDETQYFCPADLPDAVAAEVADLAVRAY 255

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC G  R DF+ D    + + LE N  PGMT  S+ P  A   G S+ EL + +V +
Sbjct: 256 RALGCAGWGRIDFMLDA-DNRPWLLEANTSPGMTSHSLVPMAAKAIGMSYAELCVSIVSE 314

Query: 296 ASCL 299
           A+C 
Sbjct: 315 AACK 318


>gi|157369008|ref|YP_001476997.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157320772|gb|ABV39869.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 306

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     ID+       L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGAAVLAGLREAGIDAHGIDIRDFPVTQLKEHGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE LE+PYT SG++ASAL+MDK R+K V  S G+PV P + +NR     
Sbjct: 65  RGGEDGTLQGMLEFLELPYTGSGVMASALTMDKWRTKMVWQSMGLPVAPYVALNRKQYAG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L     + H D +L+E++
Sbjct: 125 AEKATLIARVEALGLPLIVKPSREGSSVGMSKVTERDALEAAL--EEGFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY Y+ KY S ++ +  P+ +      E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQPAGVFYDYQAKYISDDTQYFCPSGLGAQQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  
Sbjct: 242 LRAYRGLDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|163738723|ref|ZP_02146137.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
 gi|161388051|gb|EDQ12406.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis BS107]
          Length = 292

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 134/298 (44%), Positives = 192/298 (64%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKAEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L Q       D++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSQDMP----DEVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLTVTDIL--TDGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|78221636|ref|YP_383383.1| D-alanine--D-alanine ligase [Geobacter metallireducens GS-15]
 gi|78192891|gb|ABB30658.1| D-alanine--D-alanine ligase / cell division protein FtsQ [Geobacter
           metallireducens GS-15]
          Length = 627

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 120/300 (40%), Positives = 183/300 (61%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ERE+SLSSG A   AL   G+    IDVDR +  VL     D+AF  LHG
Sbjct: 11  IGVLMGGLSAEREISLSSGGAVHKALLARGYDAVAIDVDRDLPQVLVREWIDVAFICLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M+K+ +KQ  ++ G+ + P  ++ R     
Sbjct: 71  RYGEDGAVQGVLELMGIPYTGSGVLASALAMNKIFAKQAFAAAGLTITPHRVLVRGETFD 130

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P V+KP + GSS+G+ ++KK +   L     +++ + +++L+E++V G E+ 
Sbjct: 131 AVAAGIDLPVVVKPSQEGSSVGVSIVKKAE--ELAAALEAAFRYDNEILVEKFVKGREIQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D ++      VPK +FY +E KY+   + H+ P  +P D+Y+++      AH+A+
Sbjct: 189 VGILDDRAMGAI-EIVPKKEFYDFEAKYTDGMAEHICPPVLPADLYRKLLAEGEKAHRAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA-AYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        F LE+N  PGMT +S+ PE+A   AG +F EL+  ++  AS
Sbjct: 248 GCAGYSRVDFLVTE-GGDCFLLEVNTLPGMTALSLLPEIAQKEAGIAFEELVERILVSAS 306


>gi|330987136|gb|EGH85239.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 319

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      +       +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       S+  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKSASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|257483445|ref|ZP_05637486.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331011579|gb|EGH91635.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 319

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      +       +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       S+  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKSASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|259907419|ref|YP_002647775.1| D-alanine--D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|224963041|emb|CAX54524.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae Ep1/96]
 gi|283477252|emb|CAY73165.1| D-alanine-D-alanine ligase [Erwinia pyrifoliae DSM 12163]
          Length = 306

 Score =  199 bits (506), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 113/305 (37%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P I +NR     
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFIALNRVQMDA 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M S + +  P  +KP + GSS+GI  + +   +   L    ++ H D++L+E +
Sbjct: 125 GLDAQMMTSINALGLPLFVKPSREGSSVGISRVNQTSELQAAL--VEAFRHDDEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L         S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSI-RIQTSSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|187479348|ref|YP_787373.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
 gi|123513903|sp|Q2KVG4|DDL_BORA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115423935|emb|CAJ50487.1| D-alanine--D-alanine ligase [Bordetella avium 197N]
          Length = 317

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 154/304 (50%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG     AL  AG      D        L     +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGAGVHEALRSAGVDAHLFDTGLQDLTALEAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
            FGEDG +Q  LELL IPYT SG+ ASAL+MDK+ +K+V    G+P      ++  T   
Sbjct: 68  RFGEDGAIQGALELLNIPYTGSGVTASALAMDKIMTKRVWLQHGLPTPAFEEIDSDTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +      +S     + +L EQ+V G ELT
Sbjct: 128 RVPDRLGLPLILKPPHEGSTVGITKVAACADMEQAYAAASH--FDEVVLAEQFVRGRELT 185

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                   +A        V     Y Y+ KY +  + +  PA +P+ + ++++++A  A+
Sbjct: 186 VALLGSGRNARALPVIEIVAPDGNYDYQNKYFTDVTQYFCPADLPVGVAEQIEKIAVQAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ EL + ++ D
Sbjct: 246 RALGCEGWGRADFILDGQ-NQPWLLEMNTSPGMTSHSLVPMAARAVGMSYAELCVAILAD 304

Query: 296 ASCL 299
           ASC 
Sbjct: 305 ASCK 308


>gi|71735690|ref|YP_276228.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71556243|gb|AAZ35454.1| D-alanine--D-alanine ligase B [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320322448|gb|EFW78541.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           B076]
 gi|320330083|gb|EFW86070.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 319

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      +       +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|83589988|ref|YP_429997.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
 gi|123524583|sp|Q2RJD5|DDL_MOOTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83572902|gb|ABC19454.1| D-alanine--D-alanine ligase [Moorella thermoacetica ATCC 39073]
          Length = 309

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 156/305 (51%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A A+AL   G +V  ID++R V   L +  PD+ FN LHG
Sbjct: 3   IAVLMGGPSSEREISLKSGSAVAAALSGLGHQVITIDLNREVVARLKNFAPDVVFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG VQ +LE+L +PYT S +LASA++MDK+ +K+V+   G+P    +         
Sbjct: 63  KPGEDGSVQGLLEVLGLPYTGSRVLASAITMDKIMTKRVLLQAGIPTPKFLAWTGAEYAT 122

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P VIK    GS++G  +++++  +   +  +  ++          
Sbjct: 123 GKKEIKAAILKELGLPVVIKAPTQGSTIGTFIVREEGELEPAIAGALKYDLSFMAEAYLA 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              I           +      V  + FY Y+ KY+   S H++P ++P D+      LA
Sbjct: 183 GPEITAAVLGNRKPQVLPLIEIVSHTGFYDYQAKYTPGLSDHIIPPRLPDDVLAAATSLA 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              +  +GCRG +R DF+     R+   +E+N  PGMT  S+ P+ A  AG  F +L+  
Sbjct: 243 GRTYALLGCRGFARVDFIV-AGGREPQVIEVNSVPGMTATSLVPDAARAAGLDFPDLVQK 301

Query: 292 MVEDA 296
           +V+ A
Sbjct: 302 IVDLA 306


>gi|222053884|ref|YP_002536246.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
 gi|221563173|gb|ACM19145.1| D-alanine/D-alanine ligase [Geobacter sp. FRC-32]
          Length = 308

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 118/299 (39%), Positives = 180/299 (60%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+EREVSL SG A   AL   G+    IDVDR+V   +     + AF  LHG
Sbjct: 9   IGVLMGGFSAEREVSLKSGAAVLKALVGLGYNAVGIDVDRNVATKIVAEGINAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LEL+ IPYT SG+LASAL+M+K+ +KQ   + G+ V P  +V R  +  
Sbjct: 69  RYGEDGAIQGLLELMAIPYTGSGVLASALAMNKIFAKQAFQAAGLTVAPYRVVCRGEVFD 128

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+KP + GSS+G+ +++++  +   +    ++ +  ++LIEQ++ G E+ 
Sbjct: 129 AKTFTFPFPVVVKPSQEGSSVGVSIVRQESELEAAM--QDAFKYDREILIEQFIKGAEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D +L      VPK +FY +E KYS   + H+LPA++P D+Y++V R     H+A+
Sbjct: 187 VGILEDKALGAI-EIVPKKEFYDFEAKYSPGMAEHILPARLPADLYEKVLRAGEEGHRAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           GC G SR DFL        + LE+N  PGMT +S+ PE+A  +G  F EL+  ++  A+
Sbjct: 246 GCSGYSRVDFLVTTE-GLCYILEVNTLPGMTDLSLLPEIARGSGIEFGELVERLISAAT 303


>gi|163741566|ref|ZP_02148957.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
 gi|161385300|gb|EDQ09678.1| D-alanine--D-alanine ligase [Phaeobacter gallaeciensis 2.10]
          Length = 292

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 132/298 (44%), Positives = 190/298 (63%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSLS+G+ CA+AL D G++V+++D    +   L   +PD+ FN LHG +GE
Sbjct: 1   MGGPSAEREVSLSTGRECATALRDEGYQVTELDAGPDLAARLQADRPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG VQ +LE L IPYTHSG+LASAL+MDK R+K +  + G+PV  S + ++  + + H++
Sbjct: 61  DGCVQGLLEWLGIPYTHSGVLASALAMDKQRAKSIYRAAGLPVVESGIYSKTEVMAGHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           +PPYV+KP   GSS+G+ ++ +  + P  L          ++++E +  G ELT  V+GD
Sbjct: 121 APPYVVKPNNEGSSVGVYLVNEVANGPPQLSADMPH----EVMVESFAPGRELTTTVLGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             L VT+I      +Y Y+ KY    S HVLPA +P +I+      A  AH A+GCRGIS
Sbjct: 177 KPLMVTDIL--TDGWYDYDAKYKPGGSRHVLPADVPEEIFALCLDYAVKAHDALGCRGIS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE A ++G +F +L  W+VEDA+C R
Sbjct: 235 RTDFRWDEARGAEGLILLETNTQPGMTPTSLTPEQAEHSGMTFGQLCSWLVEDATCPR 292


>gi|298488537|ref|ZP_07006567.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156878|gb|EFH97968.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 319

 Score =  199 bits (506), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      +       +
Sbjct: 81  RGGEDGSMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|71909108|ref|YP_286695.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
 gi|123626568|sp|Q47AA6|DDL_DECAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71848729|gb|AAZ48225.1| D-alanine--D-alanine ligase [Dechloromonas aromatica RCB]
          Length = 301

 Score =  199 bits (505), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 157/299 (52%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG    +AL+  G      D        L     D AF  LHG
Sbjct: 7   VAVLFGGTSAEREVSLNSGSRVLAALQGQGIDAHAFDPAEQPLDALK--GYDRAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q  LE++ IPYT SG+LASAL+MDK R+K +  + G+ +     +  +    
Sbjct: 65  RHGEDGTIQGALEVMHIPYTGSGVLASALAMDKFRTKLMWRAAGLAIPEYALLTADSDFA 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D +  +  P  +KP + GSS+G+  +K+  ++     +++   H   ++ E+ V G E T
Sbjct: 125 DIEEELGLPLFVKPAREGSSIGVTKVKERGALKAAYEEAA--RHDPLVIAEKGVMGGEYT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++            P +++Y YE KY+  ++ ++ P  +P     E+++ A  A + +
Sbjct: 183 VGII-GDEAMPIIKIEPATEWYDYEAKYNRDDTRYLCPCGLPEAKEMEIRKGALEAFRIL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G RG  R DFL D    K ++LE+N  PGMT  S+ P  A   G  +  L+  ++E A+
Sbjct: 242 GGRGWGRVDFLMDE-DGKYYFLEVNTAPGMTDHSLVPMAARVNGMDYPTLVRRVLELAA 299


>gi|261338914|ref|ZP_05966772.1| hypothetical protein ENTCAN_05112 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318739|gb|EFC57677.1| D-alanine--D-alanine ligase B [Enterobacter cancerogenus ATCC
           35316]
          Length = 306

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL+SG A  + L + G     +D        L  +  D  F  LHG
Sbjct: 5   IAVLFGGTSAERDVSLNSGAAVLAGLREGGVNAHPVDPKDVDVTQLKAMGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGLLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRREYEM 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + K   +P  L  + ++ H +++LIE++
Sbjct: 125 GLNDSVNGRIAALGLPVIVKPSREGSSVGMSKVDKAGDLPAAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  P+ +      +++ L 
Sbjct: 183 LSGPEYTVAMLGEEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPSGLEDQREADLRALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTVLGCRGWGRIDVMLDG-DGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDQA 305


>gi|114327090|ref|YP_744247.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
 gi|122327928|sp|Q0BV28|DDL_GRABC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114315264|gb|ABI61324.1| D-alanine--D-alanine ligase [Granulibacter bethesdensis CGDNIH1]
          Length = 307

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 128/304 (42%), Positives = 184/304 (60%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--DLAFNVL 58
           + VL GGIS ER VSL SG+   +AL +AG++V+ I+V   +   +A L P  D+ FN L
Sbjct: 6   VVVLYGGISEERAVSLISGQQVVAALREAGYEVTPIEVGADLRDTIAALTPAPDVVFNAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +L+ L IPYTHSG+ ASA++MDK  ++    + G+PV    LV    +
Sbjct: 66  HGRFGEDGAIQGVLDWLNIPYTHSGVRASAIAMDKAAARTAFLAAGLPVAEGRLVTVEEL 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             Q  +  P+VIKP   GS++G+ ++ +  +   ++ +S   + G Q L+E+Y+ G ELT
Sbjct: 126 AEQDPLPRPFVIKPANEGSAVGVHILHEGDNRRTEIARSW--SFGGQALVEEYIPGRELT 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+ D +L       P+S FY YE KY+   S H+LPA++  D +K    +A  AH A+
Sbjct: 184 VGVLNDRAL-TVTDIRPRSAFYDYESKYAEGGSRHILPAQMHPDAFKRALDVALAAHHAL 242

Query: 239 GCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCRG +RSDF +D       ++  LE+N QPG+TP S+ PE AA  G  F  L  WMVE 
Sbjct: 243 GCRGATRSDFRYDDTRAEPGRLVLLEVNTQPGLTPTSLLPEQAALMGMDFVSLCRWMVEQ 302

Query: 296 ASCL 299
           A+C 
Sbjct: 303 ATCR 306


>gi|293603446|ref|ZP_06685871.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
 gi|292818148|gb|EFF77204.1| D-alanine-D-alanine ligase B [Achromobacter piechaudii ATCC 43553]
          Length = 316

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/304 (35%), Positives = 152/304 (50%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    D  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVQQALASAGVDAHLFDTGERSLAELAAEGFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LELL IPYT SG +ASAL+MDK  +K++    G+P     +++  T   
Sbjct: 68  RYGEDGTIQGALELLGIPYTGSGPMASALAMDKTMTKRLWLQVGLPTPEFEVLDADTELR 127

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P +IKP   GS++GI  +     +      +++      +L EQ++ G ELT
Sbjct: 128 LVPDRLSLPLIIKPPHEGSTVGITKVVGYSDMKEAY--AAAARFDSVVLAEQFIIGRELT 185

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                    A              Y YE KY S ++    PA +P  + +EV  +A  A+
Sbjct: 186 VAVLGSGKGARALPVIEIAAPGGNYDYEHKYFSDDTQFFCPATLPDGVAEEVAEIAVKAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GC G  R+DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++ +
Sbjct: 246 QALGCEGWGRADFILD-RDNRPWLLEMNTSPGMTSHSLVPMAAKAVGISYADLCVSILSE 304

Query: 296 ASCL 299
           ASC 
Sbjct: 305 ASCK 308


>gi|258515376|ref|YP_003191598.1| D-alanine--D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
 gi|257779081|gb|ACV62975.1| D-alanine/D-alanine ligase [Desulfotomaculum acetoxidans DSM 771]
          Length = 314

 Score =  199 bits (505), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 170/308 (55%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+EREVSL +G+A   AL   G++V +IDV  ++   +     D+AF  LHG
Sbjct: 5   IGVLLGGKSAEREVSLRTGEAIYKALLGLGYQVVKIDVQENIAERIKEESIDMAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE+L IPYT SG+LASAL+MDK+ +K+++    +P     L+ R + ++
Sbjct: 65  KYGEDGCIQGLLEILNIPYTGSGVLASALAMDKIATKRMLLQAKLPTAEFSLIRRSSYNN 124

Query: 121 QHL----------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P V+K    GS++GI  +  ++ +P  L    ++ +    LIEQ
Sbjct: 125 ETKEEICQTLFKYMPLPLVVKAPTQGSTIGISFVNNEEQLPDAL--EEAFRYDPIALIEQ 182

Query: 171 YVDGIEL--TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ G E+  T               V  +  Y Y+ KY+   S H++P ++  ++ K VQ
Sbjct: 183 FISGTEVTATVLGNNQPEALPLIEIVSNTGVYDYKAKYTVGLSDHIMPPRLKEEVQKNVQ 242

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA    + +GC G++R DF+ D  S   + LEIN  PGMT  S+ P+ A  AG SF +L
Sbjct: 243 ELAVKVFKTMGCSGLARVDFIVDANSN-PYILEINTIPGMTETSLAPDAARAAGISFTDL 301

Query: 289 LLWMVEDA 296
              M++ A
Sbjct: 302 TDRMIKFA 309


>gi|262044864|ref|ZP_06017907.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037833|gb|EEW39061.1| D-alanine-D-alanine ligase B [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 306

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSERCDLASAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|238893072|ref|YP_002917806.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545388|dbj|BAH61739.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 306

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFKDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|163746137|ref|ZP_02153496.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
 gi|161380882|gb|EDQ05292.1| D-alanine--D-alanine ligase [Oceanibulbus indolifex HEL-45]
          Length = 293

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 139/299 (46%), Positives = 190/299 (63%), Gaps = 9/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           MGG S+EREVSLSSG+ACA+AL + G + V +++ DR +  VL  LKP    N LHG +G
Sbjct: 1   MGGPSAEREVSLSSGRACAAALREHGGYNVIEVEADRDLAAVLTDLKPYAVLNCLHGRWG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG VQ +LE L IPYTHSG+LASAL+MDK RSK V    G+PV  SI+  +  + + H+
Sbjct: 61  EDGSVQGLLEWLHIPYTHSGVLASALAMDKQRSKDVFRHAGLPVLESIIAPKADVMASHV 120

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++PPYV+KP   GSS+G+ ++ ++ + P  L +        ++++E +  G ELT  VMG
Sbjct: 121 MAPPYVVKPNNEGSSVGVYLVAEENNGPPQLSEDMPA----EVMVETFAPGRELTTTVMG 176

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +L VT+I    + +Y Y+ KY    S HV+PA +P +I       A  AH+A+GC+G+
Sbjct: 177 DRALGVTDIIT--TGWYDYDAKYKPGGSRHVVPADLPQEITDLCFDYARRAHEALGCKGV 234

Query: 244 SRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           SR+DF +D       +  LE N QPGMT  S+ PE A   G SF EL  WMVEDASC R
Sbjct: 235 SRTDFRWDAARGAEGLILLETNTQPGMTATSLSPEQAVACGISFPELCAWMVEDASCDR 293


>gi|330888570|gb|EGH21231.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. mori str.
           301020]
          Length = 319

 Score =  198 bits (504), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLEALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+      +       +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLGNESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGFPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330012005|ref|ZP_08307222.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|328533994|gb|EGF60646.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 306

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFAA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|152968677|ref|YP_001333786.1| D-alanine--D-alanine ligase [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|150953526|gb|ABR75556.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
          Length = 306

 Score =  198 bits (504), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 157/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L       AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDVDITQLKKQGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+++PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELIQLPYTGSGVMASAISMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E++
Sbjct: 125 GLSTDVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLASAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P          +Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESAIQNLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|163784016|ref|ZP_02178976.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880714|gb|EDP74258.1| D-alanine--D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 295

 Score =  198 bits (503), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 157/298 (52%), Gaps = 15/298 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA  +AL+  G+     D  +    +  + +  PDLAF  L
Sbjct: 8   IALLYGGNSKEREISIKSGKAVENALKLLGYNYKVFDPVKGFEFIEEIKNYNPDLAFISL 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q++LE L I YT S    SA+ MDK+ +K+++SS  +PV  +        
Sbjct: 68  HGKGGEDGEIQSLLEFLGIKYTGSNPKTSAVCMDKVLTKKILSSENIPVPQTFS------ 121

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  I  P V+KP + GSS+G+ +    + +   L     +     ++IEQ++ G E+T
Sbjct: 122 --KDNIKFPVVVKPSEEGSSIGVYIANNKEDLNDALKHLKDY---KNIIIEQFIKGREIT 176

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    +      V    FY Y+ KY S  + ++ PA+I   + +++ ++A    +  
Sbjct: 177 VSILNG-KILPIVEIVVDDGFYDYKNKYISSKTNYICPAEIDEKLQEKINKIAKKCWEVF 235

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G  R D + D  +   + LEIN  PGMT  S+ P+ A   G SF EL+  ++E A
Sbjct: 236 NCKGAVRIDMIID-KNNTPYVLEINTIPGMTEHSLLPKAAKAIGLSFEELVNEIIEGA 292


>gi|269468110|gb|EEZ79820.1| D-alanine-D-alanine ligase [uncultured SUP05 cluster bacterium]
          Length = 292

 Score =  198 bits (503), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 154/295 (52%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+A   AL+    K  + D +      L   K D AF VLHG
Sbjct: 2   IAVLMGGNSAEREVSLESGEAVYIALKTQNIKCFKFDWNGDNLADLWSKKFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   +S   M+K  +K +     +P+ PS++ N      
Sbjct: 62  RGGEDGFIQKKLEDRNITYTGSDSRSSKNCMNKTTTKTIWKENDLPLAPSVVSNANEPIP 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP   GSS+GI  +     +   L  + +W +    LIE++++G E T  
Sbjct: 122 SITFPLPWAVKPTLEGSSIGISKVTDQSQLNEAL--ALAWKYDQNALIERWIEGDEYTVS 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ + +L   +I V    FY Y+ KY S ++ ++ P  +P    K +Q +A  A +A+  
Sbjct: 180 ILNNKALPAIKIIV-NRGFYDYKSKYHSDDTQYLCPCGLPETDEKHLQSIALRAFKAMNA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               R DF+ D  ++K++ LEIN  PGMT  S+ P  A   G SF EL+L ++ D
Sbjct: 239 SNWGRVDFIID-KNQKIYLLEINTVPGMTSHSLVPMAAKAEGISFDELVLNILND 292


>gi|126735387|ref|ZP_01751133.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
 gi|126715942|gb|EBA12807.1| D-alanine--D-alanine ligase [Roseobacter sp. CCS2]
          Length = 292

 Score =  198 bits (502), Expect = 9e-49,   Method: Composition-based stats.
 Identities = 138/298 (46%), Positives = 187/298 (62%), Gaps = 8/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+ER+VSLS+G+ CA+AL DA   V ++D    V   L  + PD+ FN LHG +GE
Sbjct: 1   MGGPSAERDVSLSTGRECAAALRDAECNVIEVDAGPDVAARLIEIAPDVVFNALHGRWGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           DG +Q +LE L+IPYTHSG+LASAL++DK R+K V    G+PV  SIL +   + + H++
Sbjct: 61  DGAIQGVLEWLQIPYTHSGVLASALTLDKQRTKDVYRKVGLPVVDSILASADAVRAAHVM 120

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            PPYV+KP   GSS+GI ++ +  + P  L         D++++E +  G ELT  VMGD
Sbjct: 121 PPPYVVKPYNEGSSVGIYIVNEGANGPPQLADDMP----DEVMVEAFAPGRELTTTVMGD 176

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +L VT+I      +Y Y  KY+   S H LPA IP+DI+      A  AH A+GCRG+S
Sbjct: 177 RALTVTDII--TDGWYDYHAKYAPGGSRHELPADIPVDIFDACMDYALRAHDALGCRGVS 234

Query: 245 RSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           R+DF +D       +  LE N QPGMTP S+ PE AA+ G +F E   W+VEDASC R
Sbjct: 235 RTDFRWDEARGLDGLILLETNTQPGMTPTSLTPEQAAHVGIAFPEFCRWLVEDASCDR 292


>gi|260220018|emb|CBA27135.1| D-alanine--D-alanine ligase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 312

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 6   VAVLMGGASAEREVSLMSGSGVLKALRSQGVDAHAFDPSERALDELKREGFDRCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTM 118
            FGEDG VQ  LELL IPYT SG++AS++SMDK+ +K++    G+       +     T 
Sbjct: 66  RFGEDGTVQGALELLGIPYTGSGVMASSISMDKVMTKRIWRFEGLSTPAWQQVKSAAETQ 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GSS+G   +            + +  H   +L EQ++ G E+T
Sbjct: 126 AAFAALGAPMIVKPAREGSSIGFTKVMSADQCDAAY--ALASQHDSHVLCEQFIAGDEVT 183

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V G +S          V     Y Y+ KY +  + +++PA +P    + +Q L   A+
Sbjct: 184 CPVWGPSSAPEALPVIRIVAPEGNYDYQNKYFTDTTQYLVPAGLPAGEEEAIQALVCKAY 243

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A+ AG S+ EL + +++ 
Sbjct: 244 QVLGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSASAAGISYEELCVRLLQS 303

Query: 296 ASCL 299
            +  
Sbjct: 304 TATD 307


>gi|239947809|ref|ZP_04699562.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239922085|gb|EER22109.1| D-alanine--D-alanine ligase [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 321

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/297 (38%), Positives = 188/297 (63%), Gaps = 3/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+E EVSL S +    AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  VALVAGGMSAECEVSLVSSEGVRKALVELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ DK+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFDKIHSRSWFLTNNINMVESIVVNKSNDVR 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYVIKPLK GSS+G+ VI ++ +          + +GDQ++IEQY+ G EL   
Sbjct: 145 NDPMKRPYVIKPLKQGSSIGVEVIFEEDNFNFA---DYDFPYGDQVIIEQYIKGRELQVA 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ + C
Sbjct: 202 VLNGKALGALEIKLLKNRFYDYETKYTEGFAEHLCPAPLPANLYEKLLIESEKIYKTMNC 261

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G +R++F+ +  + K++ LE+N  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 KGPARAEFILEEQTNKLYALEMNTHPGMAPLSIVPEIAAYAGINFTNLIEEIIKTAS 318


>gi|56476225|ref|YP_157814.1| D-alanine--D-alanine ligase [Aromatoleum aromaticum EbN1]
 gi|81358258|sp|Q5P6Z8|DDL_AZOSE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56312268|emb|CAI06913.1| D-alanine--D-alanine ligase (EC 6.3.2.4) (D-alanylalanine
           synthetase) (D-Ala-D-Ala ligase), gene: DDL OR DDLB OR
           NE0994 [Aromatoleum aromaticum EbN1]
          Length = 309

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  +AL+ AG      D  +    +L     D AF  LHG
Sbjct: 13  VAVLLGGTSAEREVSLMSGGAVLAALQAAGVDAHGFDPAQQDLHILKEQGFDRAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LELL+IPYT SG++ASAL+MDK R+K V ++CG+P     ++   T   
Sbjct: 73  RGGEDGTVQGLLELLKIPYTGSGVMASALAMDKWRTKMVWAACGLPTPRYAILAGDTDWE 132

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP+  GSS+G   +     +        +    D +L E+++ G ELT
Sbjct: 133 AVVAELGLPIFVKPVHEGSSMGATKVTAASQLKAA--WERAARFDDLVLAEEFIVGAELT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + + +L V  I  P    Y Y+ KY +  + ++ P+ +P +  + +Q L   + +A+
Sbjct: 191 VPFLAERALPVIRIEAP-GGKYDYQNKYFTDETRYLCPSGLPAEQEQALQALVMKSARAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +      + + LE+N  PGMT  S+ P  A   G  F  L L ++EDA
Sbjct: 250 GCRGWGRADLMLTG-DGRPYLLEMNTSPGMTGHSLVPMAAKAVGLDFTALCLAILEDA 306


>gi|206579559|ref|YP_002240436.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
 gi|206568617|gb|ACI10393.1| D-alanine--D-alanine ligase B [Klebsiella pneumoniae 342]
          Length = 306

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L +L    AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +   L  + ++ H D++L+E++
Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLQSAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P         ++Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|238650473|ref|YP_002916325.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
 gi|259645173|sp|C4K126|DDL_RICPU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238624571|gb|ACR47277.1| D-alanine--D-alanine ligase [Rickettsia peacockii str. Rustic]
          Length = 323

 Score =  198 bits (502), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 113/299 (37%), Positives = 187/299 (62%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG+S+EREVSL S +  + AL + G++V+ ID+   + + L  +KPD+ FN LHG
Sbjct: 25  IALMAGGMSAEREVSLVSSEGVSKALIELGYRVTFIDMGADIAVRLQEIKPDIVFNCLHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +  +L ++ IPYTHSG+L+SAL+ +K+ S+    +  + +  SI+VN+     
Sbjct: 85  TYGEDGCLPGLLNIMRIPYTHSGVLSSALAFNKIHSRIWFLTNNINMAESIVVNKSDNIK 144

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD--GIELT 178
              +  PYVIKPL  GSS+G+ VI  +            + +GDQ++IEQY+   G EL 
Sbjct: 145 NDPMKRPYVIKPLAQGSSIGVEVIFAEDDFNFA---DYDFPYGDQVIIEQYIKGQGRELQ 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+   +L   EI + K+ FY YE KY+   + H+ PA +P ++Y+++   +   ++ +
Sbjct: 202 VAVLNGKALGALEIKLLKNRFYDYETKYTEGFADHLCPAPLPANLYEKLLIESEKIYKTM 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            C+G +R++F+ +  + K++ LEIN  PGM P+SI PE+AAYAG +F  L+  +++ AS
Sbjct: 262 NCKGPARAEFILEEQTNKLYALEINTHPGMMPLSIVPEIAAYAGINFTNLIEEIIKTAS 320


>gi|288937136|ref|YP_003441195.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|290512559|ref|ZP_06551925.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|288891845|gb|ADC60163.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|289774900|gb|EFD82902.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 306

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L +L    AF  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPRDIDITQLKNLGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +L+L+++PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLDLIQLPYTGSGVMASALSMDKLRSKWLWQGAGLPVAPWVALTRAQFTA 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +IKP + GSS+G+  + +   +P  L  + ++ H D++L+E++
Sbjct: 125 GLSAAVEQQIAALGLPVIIKPSREGSSVGMSKVSESCDLPSAL--ALAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P         ++Q L 
Sbjct: 183 LSGPEFTVAIVGEEILPSI-RIQAAGTFYDYEAKYLSDETQYFCPGFEDPARESDIQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNVLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|70732382|ref|YP_262138.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
 gi|68346681|gb|AAY94287.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 318

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SGKA   AL+  G     IDV   +   L   K D AF +LHG
Sbjct: 20  VAVLYGGKSAEREVSLKSGKAVLEALQSGGVNAFGIDVGDDLLQRLLSEKIDRAFIILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE L IPYT SGILASAL+MDK+R+KQV  S G+P      +      +
Sbjct: 80  RGGEDGSMQGLLECLGIPYTGSGILASALAMDKLRTKQVWHSLGIPTPRHAVLSSEADCI 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 140 SAVAELGLPLIVKPAHEGSSIGMAKVTSASELIDA--WKAASTYDSQVLVEQWIQGPEFT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D  L    +  P +  Y Y+ KY + ++ + +P  +     +E+  L   A +A+
Sbjct: 198 IATLRDQVLPPIALGTPHTF-YDYDAKYLASDTQYRIPCGLDSSKEQELMELTAKACEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    + ++LE+N  PGMT  S+ P  A  AG  F++L+L ++  +  
Sbjct: 257 GIAGWARADVMQDAQ-GQFWFLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILAASLE 315

Query: 299 LR 300
            R
Sbjct: 316 AR 317


>gi|330981214|gb|EGH79317.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 319

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330938055|gb|EGH41817.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 319

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 165/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|119897177|ref|YP_932390.1| D-alanine--D-alanine ligase [Azoarcus sp. BH72]
 gi|190359112|sp|A1K3U8|DDL_AZOSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119669590|emb|CAL93503.1| probable D-alanine-D-alanine ligase [Azoarcus sp. BH72]
          Length = 304

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG A  +AL+ AG      D       +L     D  F  LHG
Sbjct: 8   VAVLFGGSSAERDVSLMSGAAVLAALQGAGVDAHAFDPAERDLHILKEEGYDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LEL+ IPYT SG++ASAL+MDK R+K V  SCG+P      +  +    
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALAMDKWRTKMVWLSCGLPTPRYAILDADSDFD 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP+  GSS+G   + +   +        +  +   ++ E+++ G ELT
Sbjct: 128 AIARDLGLPIFVKPVHEGSSMGATKVTEAGQLRAA--WELAARYDSLVIAEEFISGQELT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D +L +  I  P    Y Y+ KY + ++ +  P  +P    + +Q L   + + +
Sbjct: 186 APFLDDRALPLVRIVAPDG-NYDYQHKYFTDDTRYDCPCGLPQAEEEALQALILKSARVL 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +  P   + + LE+N  PGMT  S+ P  A  AG SF  L L ++  A
Sbjct: 245 GCRGWGRADLILTPE-GRPYLLEMNTSPGMTGHSLVPMSARVAGMSFEALCLAILAGA 301


>gi|225848999|ref|YP_002729163.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225644020|gb|ACN99070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 303

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 152/297 (51%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +A+L GG S ERE+S+ SGKA   AL+  G+     D          +   KPDLAF  L
Sbjct: 5   IALLYGGYSREREISIKSGKAVEGALQRLGYTYKVFDPVEREKFLEEIVDYKPDLAFIAL 64

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q++LE L IPYT S    S + MDK+ +K  +    +             
Sbjct: 65  HGKGGEDGTIQSLLEFLGIPYTGSDPKTSMICMDKVLTKMYLEKFNINTPKWSFFLNIED 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P V+K    GSS+G+ ++         +         +++L+EQ++ G ELT
Sbjct: 125 ALSFYPEFPVVVKAPNEGSSIGVYIVNNQDEYKKAVEDVFKL--DEKVLVEQFIKGRELT 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D  +      V +  FY Y+ KY +  + ++ PA++P ++YK VQ + +  ++++
Sbjct: 183 VGILDD-EVFDIVEVVVEEGFYDYQNKYITGKTKYICPAQLPPEVYKTVQDIGYKTYKSL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            C+G +R D + D  S   + LE+N  PGMT  S+ P+ AA  G SF +L+  +++ 
Sbjct: 242 NCKGQARVDIILD-YSLTPYVLEVNTVPGMTEFSLLPKAAAVKGISFDQLVDRIIKS 297


>gi|152980554|ref|YP_001354703.1| D-alanine--D-alanine ligase [Janthinobacterium sp. Marseille]
 gi|167012327|sp|A6T2F6|DDL_JANMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151280631|gb|ABR89041.1| D-alanine-D-alanine ligase [Janthinobacterium sp. Marseille]
          Length = 320

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 145/305 (47%), Gaps = 11/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK   +AL   G      D        LA  K D  F  LHG
Sbjct: 8   VGVLFGGRSAEREVSLMSGKGVLAALLSKGIDAHPFDPAERSLAELAAEKFDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114
            FGEDG +Q  LE L IPYT  G++ASA++MDK+ +K+V  S GVP              
Sbjct: 68  RFGEDGSLQGALEQLGIPYTGPGVMASAIAMDKVITKRVCLSHGVPTPKFTALEVEATTA 127

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                       P ++K    GS++G  + K + +  +         + D +L+EQ+V G
Sbjct: 128 EQLQAIAAEFGMPLMLKAPHEGSTIG--IAKVETAEGMQAGFDLCAKYDDVVLVEQFVKG 185

Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELT        +A        +     Y YE KY S ++ ++ PA       K VQ LA
Sbjct: 186 RELTVPVLGSGRNARALPIVEIIAPQGNYDYEHKYFSDDTQYLCPAPFDAAFTKRVQALA 245

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G +R DFL      + F LEIN  PGMT  S+ P  A  AG ++ +L + 
Sbjct: 246 VSAFNAVGCTGWARVDFLVRESDNEPFLLEINTSPGMTGHSLVPMSAKVAGTAYEDLCVE 305

Query: 292 MVEDA 296
           ++  A
Sbjct: 306 ILRMA 310


>gi|330994420|ref|ZP_08318345.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
 gi|329758420|gb|EGG74939.1| D-alanine--D-alanine ligase [Gluconacetobacter sp. SXCC-1]
          Length = 313

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 120/309 (38%), Positives = 179/309 (57%), Gaps = 12/309 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           +AVLMGG+S+ER+VSL+SG+  A AL   G  V  ID    +  ++  L+   PD  FN 
Sbjct: 6   IAVLMGGLSAERDVSLNSGRNVAEALRGLGHDVRCIDAGADLLAIVRDLRDYGPDAVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +Q +L+ + I YTHSG+ ASA +M+K  ++ V ++ G+PV   +L+    
Sbjct: 66  LHGRLGEDGAIQGVLDWMGIAYTHSGVRASATAMNKDAARTVFAAAGLPVATGMLLTPAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  PYV+KP+  GSS+G+ ++    +    + +    +HG  +L+E+Y+ G EL
Sbjct: 126 LEPADPLPAPYVVKPVNEGSSVGVEIVHAGSNRRGAIARGW--SHGPHVLVEEYIPGREL 183

Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GV+ D   ++     A     FY YE KY++  S H LPA+I    +     LA  AH
Sbjct: 184 TVGVLDDRALTVTDITPAASGPSFYDYEAKYAAGGSRHELPARIHPAAFARACDLALAAH 243

Query: 236 QAIGCRGISRSDFLFD-----PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+GCRG SR+DF +D         ++  LE N QPGMTP S+ PE AAY G  +  L  
Sbjct: 244 RALGCRGASRTDFRYDDTAGAEAPGRLVILETNTQPGMTPTSLLPEQAAYCGMDYATLCQ 303

Query: 291 WMVEDASCL 299
           WM++ A+C 
Sbjct: 304 WMIDHATCR 312


>gi|220918999|ref|YP_002494303.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|254767715|sp|B8J8F1|DDL_ANAD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219956853|gb|ACL67237.1| D-alanine/D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 308

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 111/301 (36%), Positives = 165/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G +V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHEVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R     
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++ +   +      ++S      +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGD--VIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L      VP + FY Y  KY++  + +  PA++P    + V + A  AH+
Sbjct: 187 VDVAVLDGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMQAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|167647622|ref|YP_001685285.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|190359125|sp|B0T824|DDL_CAUSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167350052|gb|ABZ72787.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 322

 Score =  197 bits (501), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 138/303 (45%), Positives = 195/303 (64%), Gaps = 3/303 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL +G A A+ALE  G +VS++D  + V  VL  L PDL FN LHG
Sbjct: 14  IAVLLGGPSAEREVSLVTGAAYAAALERLGARVSRVDPGKDVAQVLTALAPDLVFNGLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE L + YTHSG+LASAL+MDK +SK V+++ G+PV    L +R  +  
Sbjct: 74  RWGEDGCVQGVLETLGLAYTHSGVLASALAMDKAKSKAVLAAAGIPVPGGGLFDRHDVAQ 133

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H++ PPYV+KP   GSS+G+ ++ +  + P   L +  W  G+Q+++E Y+ G+EL   
Sbjct: 134 GHVMPPPYVVKPNAEGSSVGVSLVFEGANGPPRQLAAPDWAFGEQVMVEPYIPGLELAVA 193

Query: 181 VMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+G+++             + FY Y+ KYS   S HVLPA IP  +      LA L H A
Sbjct: 194 VVGESNGPRALAVTEIRSSTGFYDYDAKYSQGGSIHVLPAPIPDAVRDRALHLAKLGHTA 253

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +GC+G++RSDF +D ++  +  LE+N QPGMTP S+ PE A +AG SF  L+ W+VEDA 
Sbjct: 254 LGCQGVTRSDFRYDDINDLLVLLEVNTQPGMTPTSLVPEQADHAGVSFDRLVFWIVEDAY 313

Query: 298 CLR 300
             R
Sbjct: 314 ARR 316


>gi|310765080|gb|ADP10030.1| D-alanine--D-alanine ligase [Erwinia sp. Ejp617]
          Length = 306

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 168/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGAAVLKGLQEAGIDAHAVDIRDFPVTRLNEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LELL+IPYT SG++ASA++MDK+RSK +   CG+PV P + +NR  MD 
Sbjct: 65  RGGEDGTLQGVLELLDIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALNRVQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S + +  P  +KP + GSS+GI  + +   +   L    ++   +++L+E +
Sbjct: 125 GLDAQLMTSINALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDNEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L         S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGSDILPSI-RIQTTSEFYDYDAKYISDETQYFCPSGLSADQETELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +        + LE+N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 242 IAAWRALGCSGWGRVDVMM-GADGHFYLLEVNTSPGMTSHSLVPMAAKQAGMTFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|325980958|ref|YP_004293360.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325530477|gb|ADZ25198.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 305

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +       D        L     D AF  LHG
Sbjct: 9   VAVLLGGRSAEREVSLQSGQAVLDALIRSEVDAYSFDPAEQALEDLLRQGFDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE + +PYT SG+++SAL+MDK R+K +  + G+P    +L++  +   
Sbjct: 69  RFGEDGTIQGVLEWMRLPYTGSGVMSSALAMDKWRTKLLWQAVGIPSPRYVLLHSDSNFE 128

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +   L+  P ++KP + GS++G+  +     +        +  +   +L E+++ G ELT
Sbjct: 129 EVSELLGLPLIVKPAREGSTIGLSKVTHKNDLLPAY--ELAAQYDALVLAEEFIVGKELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+             + Y Y+ KY S ++ +  P+ +  ++  E+Q  A  A++ +
Sbjct: 187 VAILGETP-LPIVRIEITGELYDYQAKYVSNDTRYFCPSGLSDELELEIQAQALQAYKVL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G  R D +    + + ++LE+N  PGMT  S+ P  A  AG SF +L++ +++ +
Sbjct: 246 GCHGWGRVDLILT-QTGQFYFLEVNTSPGMTGHSLVPMAAKTAGISFEDLVMRILDLS 302


>gi|292489355|ref|YP_003532242.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
 gi|292898421|ref|YP_003537790.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291198269|emb|CBJ45375.1| D-alanine--D-alanine ligase B [Erwinia amylovora ATCC 49946]
 gi|291554789|emb|CBA22610.1| D-alanine-D-alanine ligase [Erwinia amylovora CFBP1430]
          Length = 306

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A    L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTAVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD 
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  + +   +   L    ++    ++L+E +
Sbjct: 125 GLDAQVMASIDALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDHEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L         S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSI-RIQTASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|197124219|ref|YP_002136170.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|229485856|sp|B4UES4|DDL_ANASK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|196174068|gb|ACG75041.1| D-alanine/D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 308

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 111/301 (36%), Positives = 163/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACADALRQKGHDVVLLDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
            FGEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R     
Sbjct: 69  RFGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRASAGS 128

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++ +   +      ++S      +++E+YV G E
Sbjct: 129 IGVGDLPFGLPCVVKPAGEGSSVGVHLVNEAAELGPACRDAASHAGD--VIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L      VP + FY Y  KY++  + +  PA++P    + V   A  AH+
Sbjct: 187 VDVAVLDGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARLPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AGDGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCERILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|77361417|ref|YP_340992.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
 gi|123587864|sp|Q3IFY2|DDL_PSEHT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76876328|emb|CAI87550.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 306

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNHGINAIAFDPKERPLWELNELAIDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+      
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I       ++KP   GSS+G+      Q +   L  S+++    Q+L+EQ++ G E 
Sbjct: 131 AAAIMQQFKKVMVKPSHEGSSIGMAQASTPQELEDAL--SNAFKFDSQVLVEQWISGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD  L V E+  P    Y Y+ KY +  + +  PA +     + +Q +A  A   
Sbjct: 189 TITVLGDEVLPVIEMTTPNGF-YDYQAKYQATTTQYHCPADLSPADTEHLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDQQGN-FYLLEVNTVPGMTEKSLVPMAAKAHGASFEQLVVRILEQ 304


>gi|15605989|ref|NP_213366.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
 gi|6225246|sp|O66806|DDL_AQUAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2983164|gb|AAC06765.1| D-alanine:D-alanine ligase [Aquifex aeolicus VF5]
          Length = 291

 Score =  197 bits (500), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 93/294 (31%), Positives = 160/294 (54%), Gaps = 7/294 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +GKA A AL + G +V ++D+D+ +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSSEREISLKTGKAVAKALRELGHEVYELDLDKELPCKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LE+L+IPYT S  +ASA+S+DK  +K++V S G+               
Sbjct: 63  RYGEDGTVQGLLEILDIPYTGSDTIASAVSIDKDFTKRIVKSLGINTPDWETFISEGDVL 122

Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P V+KP++ GSS+G+ +++  + +    L        +++++E++V+G ++T 
Sbjct: 123 NTEWNKFPAVVKPVREGSSVGLKIVESLEELKEYALDLLKKT--ERVMVEEFVEGRDMTV 180

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           G++   +L V EI         Y+ +                 + K++Q ++    + + 
Sbjct: 181 GILKGEALPVVEII---PKKGVYDYECKYTKGMSEYRILKDEKLSKKLQEISLKISKFLS 237

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +  +R DF       K+F+LE+N  PGMT +S+ P  A   G  F++L+  ++
Sbjct: 238 LKDFARIDFRVTKE-GKIFFLEVNTIPGMTELSLLPMAAKEKGMDFKKLISIII 290


>gi|254491359|ref|ZP_05104539.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxidans DMS010]
 gi|224463488|gb|EEF79757.1| putative D-ala D-ala ligase N-terminal domain protein [Methylophaga
           thiooxydans DMS010]
          Length = 312

 Score =  197 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SGKA  + L+  G     IDV   +   LA  + D AF VLHG
Sbjct: 14  VAVLMGGRSAEREISLISGKAVLAGLQRTGIDAYGIDVSFDICHQLASGQFDRAFVVLHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q  L+ + +P+T SG+ AS LSM+K  SKQ     G+P      +     T 
Sbjct: 74  RGGEDGEIQGFLQAINMPHTGSGVTASVLSMNKRISKQNWQQQGLPTARYEQVSQATDTE 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  +   +++   +  + +  + D ++ EQ++ G E T
Sbjct: 134 QLIQQLGLPLIIKPVNEGSSIGMSKVNDAETLQAAI--ALALKYDDDVIAEQWIQGEEYT 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L    +  P+   Y +E KY S ++ ++ P  + L+  +++Q+LA  A + +
Sbjct: 192 VAILDGQALPGIRLKTPREF-YDFEAKYQSNSTEYLCPCGLDLESEEQMQQLAIQAFEGL 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF+ D  + + + LE N  PGMT  S+ P  A  AG  F  L+  ++E +
Sbjct: 251 GMTGWGRIDFMRDG-TGQFYLLEANSVPGMTDHSLVPMAAKQAGLDFDALVWRILETS 307


>gi|134095969|ref|YP_001101044.1| D-alanine--D-alanine ligase [Herminiimonas arsenicoxydans]
 gi|190359141|sp|A4G8T6|DDL_HERAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|133739872|emb|CAL62923.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Herminiimonas arsenicoxydans]
          Length = 334

 Score =  197 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 150/305 (49%), Gaps = 11/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK   +AL+  G      D        LA  K D  F  LHG
Sbjct: 15  VGVLFGGRSAEREVSLMSGKGVLAALQSKGVDAHAFDPAERSLAELAAEKFDRVFIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           ++GEDG +Q  LE L IPYT  G++ASA+SMDK+ +K+V  S GVP     +++  T  +
Sbjct: 75  SYGEDGTLQGALEQLGIPYTGPGVMASAISMDKVMTKRVCLSHGVPTPRFTVLDAETTSA 134

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                       P ++K    GS++G  + K + +  +         +   +L+EQ+V G
Sbjct: 135 AQLQSVAAEFGLPLMLKAPHEGSTIG--IAKVETAEGMQAGFDLCAKYEAVVLVEQFVKG 192

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELT  V+G                   Y YE KY S ++ ++ PA       K VQ LA
Sbjct: 193 RELTVPVIGSGRNARALPIVEIRAPQGNYDYEHKYFSNDTEYLCPAPFDEAFTKRVQALA 252

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G SR DF+      + F LEIN  PGMT  S+ P  A  AG  + +L + 
Sbjct: 253 VSAFNAVGCTGWSRVDFMVRASDNEPFLLEINTSPGMTSHSLVPMSAKVAGTGYEDLCIE 312

Query: 292 MVEDA 296
           ++  A
Sbjct: 313 ILRSA 317


>gi|33593952|ref|NP_881596.1| D-alanine--D-alanine ligase [Bordetella pertussis Tohama I]
 gi|33603171|ref|NP_890731.1| D-alanine--D-alanine ligase [Bordetella bronchiseptica RB50]
 gi|39930855|sp|Q7VUQ5|DDL_BORPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930860|sp|Q7WFS4|DDL_BORBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33564026|emb|CAE43292.1| D-alanine--D-alanine ligase B [Bordetella pertussis Tohama I]
 gi|33568802|emb|CAE34560.1| D-alanine--D-alanine ligase B [Bordetella bronchiseptica RB50]
 gi|332383370|gb|AEE68217.1| D-alanine--D-alanine ligase [Bordetella pertussis CS]
          Length = 316

 Score =  197 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 149/304 (49%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P     +   +    
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +        +     ++L EQ++ G ELT
Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAY--ELAARFDAEVLAEQFITGRELT 185

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                    A        V     Y YE KY S ++ +  PA +P D+  +V  +A  A+
Sbjct: 186 VAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GC G  R DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++ +
Sbjct: 246 AALGCEGWGRVDFILDRE-NRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAE 304

Query: 296 ASCL 299
           A+C 
Sbjct: 305 AACK 308


>gi|119469216|ref|ZP_01612200.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
 gi|119447468|gb|EAW28736.1| D-alanine-D-alanine ligase B, affects cell division
           [Alteromonadales bacterium TW-7]
          Length = 306

 Score =  197 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A  +AL++ G      D        L  L  D  F  LHG
Sbjct: 11  VAVMLGGNSAEREVSLKSGQAVFNALQNCGVDAIAFDPQNRSLWELKELNVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+      
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            H I       ++KP   GSS+G+      Q +   L   +++    Q+L+EQ++ G E 
Sbjct: 131 AHAIMAEFKKVMVKPSHEGSSIGMAQATTAQELEDAL--INAFKFDSQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P    Y Y+ KY S  + +  PA +     +++Q ++  A   
Sbjct: 189 TVTVLGDEVQPVIEMTTPNGF-YDYQAKYQSNTTQYHCPANLSTHDTQQLQAMSLEAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304


>gi|121595959|ref|YP_987855.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
 gi|190359106|sp|A1WC04|DDL_ACISJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120608039|gb|ABM43779.1| D-alanine--D-alanine ligase [Acidovorax sp. JS42]
          Length = 332

 Score =  197 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   S    L        F  LHG
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P      +  +  T 
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C       +A              Y Y+ KY +  + +  P+ +P    +E+QR+   A+
Sbjct: 194 CPILGQGTEARALPVIRIEAPQGNYDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQAY 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++  
Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILAS 313

Query: 296 ASCL 299
           AS  
Sbjct: 314 ASLD 317


>gi|156935388|ref|YP_001439304.1| D-alanine--D-alanine ligase [Cronobacter sakazakii ATCC BAA-894]
 gi|156533642|gb|ABU78468.1| hypothetical protein ESA_03246 [Cronobacter sakazakii ATCC BAA-894]
          Length = 306

 Score =  197 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   IAVLLGGHSAERDVSLQSGSAVLAGLKEAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L +PYT SG++ASA++MDK+R+K +    G+PV   + + R  +  
Sbjct: 65  RGGEDGTLQGMLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAQWVALERQDITG 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +   +++   L    ++ H  ++L+E++
Sbjct: 125 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAEALLPAL--ELAFEHDSEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S  + +  PA I     + +Q L 
Sbjct: 183 LSGPEFTVAILGDEILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 MDAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|225627879|ref|ZP_03785915.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294852754|ref|ZP_06793427.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
 gi|225617042|gb|EEH14088.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|294821343|gb|EFG38342.1| D-alanine-D-alanine ligase B [Brucella sp. NVSL 07-0026]
          Length = 315

 Score =  197 bits (499), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 13  VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 63  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 303 LLSWMVEDASCLR 315


>gi|261823014|ref|YP_003261120.1| D-alanine--D-alanine ligase [Pectobacterium wasabiae WPP163]
 gi|261607027|gb|ACX89513.1| D-alanine/D-alanine ligase [Pectobacterium wasabiae WPP163]
          Length = 306

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTKLKEDGFTRVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE LE+PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLELPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRHYSE 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TAANELLAKFTHLGLPLIVKPSREGSSVGMSKVNALSELPAAL--EEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S ++ +  P+ +P D  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAVLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ C G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|222112147|ref|YP_002554411.1| d-alanine--d-alanine ligase [Acidovorax ebreus TPSY]
 gi|254767729|sp|B9MFR0|DDL_ACIET RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|221731591|gb|ACM34411.1| D-alanine/D-alanine ligase [Acidovorax ebreus TPSY]
          Length = 332

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   S    L        F  LHG
Sbjct: 16  VAVLMGGTSAEREVSLMSGGGVLQALRSRGVDAHAFDPAHSDLSELKAHGYSRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++  + G+P      +  +  T 
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRADGLPTPDWRLVSSSAETA 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGAPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G  +                Y Y+ KY +  + +  P+ +P    +E+QR+   A+
Sbjct: 194 CPILGQGAEARALPVIRIEAPQGNYDYQNKYFTDVTQYHCPSGLPEAEEREIQRIVVQAY 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++  
Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSANASGISYPDLCLRILAS 313

Query: 296 ASCL 299
           AS  
Sbjct: 314 ASLD 317


>gi|254967031|gb|ACT97551.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967042|gb|ACT97557.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967050|gb|ACT97561.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 301

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 119/301 (39%), Positives = 178/301 (59%), Gaps = 10/301 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLHG 60
           VLMGG S+EREVSL++GK   +AL+ AG++V   D+     +   L   KPD+ FN LHG
Sbjct: 7   VLMGGFSAEREVSLTTGKCVCAALKKAGYEVVSHDLQNGFELVETLKKEKPDVVFNALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           N+GEDG +Q  L++L++PYTHSG+ AS L MDK  +K++ S  G+ V     +      +
Sbjct: 67  NWGEDGEIQGFLDVLQVPYTHSGLKASVLGMDKSLTKELASENGIKVPQGEKMTFRKFKA 126

Query: 121 Q-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  PYV+KP+  GSS+G+ +I+K +           +    ++LIE+++DG ELTC
Sbjct: 127 EGTFLKMPYVVKPVSDGSSVGVYIIRKKEDAEA-----VRYEDDREILIEEFIDGKELTC 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+G  +  VTE+       Y Y  KY++  + H+LPA+IP +     +  A   H  +G
Sbjct: 182 MVLGSQAHVVTELRASDEF-YDYHAKYTAGATQHILPAEIPEEAANRCKLYAEHMHNILG 240

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CR +SR DF ++P    V  LEIN  PGMT +S+ PE A Y G  +  L  ++VE+ASC 
Sbjct: 241 CRSVSRCDFRYNPEDG-VVLLEINTAPGMTDLSLVPEQAKYIGIGYERLCSYLVENASCR 299

Query: 300 R 300
           +
Sbjct: 300 K 300


>gi|227113984|ref|ZP_03827640.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
          Length = 306

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +LIE++
Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S ++ +  P+ +P D  + +  LA
Sbjct: 183 LSGPEYTVAILGDDVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDDQEQALAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|148559516|ref|YP_001259321.1| D-alanine--D-alanine ligase [Brucella ovis ATCC 25840]
 gi|148370773|gb|ABQ60752.1| D-alanine--D-alanine ligase B [Brucella ovis ATCC 25840]
          Length = 308

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 167/313 (53%), Positives = 221/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+VV++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVVAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVSYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|114330270|ref|YP_746492.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
 gi|122314679|sp|Q0AJE4|DDL_NITEC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114307284|gb|ABI58527.1| D-alanine--D-alanine ligase [Nitrosomonas eutropha C91]
          Length = 306

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 105/301 (34%), Positives = 163/301 (54%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG A  +AL+ +       D        L     D AF  LHG
Sbjct: 9   VAVLLGGRSAEREISLKSGHAVLAALQRSQVDAHAFDPVGQPLEDLLKQGFDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LEL+++PYT SGILASAL+MDK R+K +  + G+     ++++  +   
Sbjct: 69  RYGEDGSVQGALELMDLPYTGSGILASALAMDKWRTKMIWQAAGISTPDYVMLDADSNFQ 128

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +IKP + GS++G+  +   Q +       ++  H   ++ EQ++ GIELT
Sbjct: 129 EVTDRLGLPLIIKPAREGSTIGLNKVDYAQDMQSAY--QTAAQHDSLVIAEQFIQGIELT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +          Y Y+ KY S ++ +  P+ +   +   +Q  A  AH+ +
Sbjct: 187 AAILDDVPLPLV-RIDVTEGLYDYQAKYFSESTRYTCPSGLSKILTTRIQEQALYAHRIL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G SR D + D  + + F+LE N  PGMT  S+ P  A  AG SF EL++ ++E  SC
Sbjct: 246 GCTGWSRVDLILD-KNGQPFFLEANTSPGMTNHSLVPMAAQAAGISFDELVIQILEL-SC 303

Query: 299 L 299
            
Sbjct: 304 E 304


>gi|254702149|ref|ZP_05163977.1| D-alanine--D-alanine ligase [Brucella suis bv. 5 str. 513]
 gi|254708100|ref|ZP_05169928.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M163/99/10]
 gi|254710469|ref|ZP_05172280.1| D-alanine--D-alanine ligase [Brucella pinnipedialis B2/94]
 gi|254714462|ref|ZP_05176273.1| D-alanine--D-alanine ligase [Brucella ceti M644/93/1]
 gi|254717360|ref|ZP_05179171.1| D-alanine--D-alanine ligase [Brucella ceti M13/05/1]
 gi|256031963|ref|ZP_05445577.1| D-alanine--D-alanine ligase [Brucella pinnipedialis M292/94/1]
 gi|256061485|ref|ZP_05451629.1| D-alanine--D-alanine ligase [Brucella neotomae 5K33]
 gi|256160162|ref|ZP_05457856.1| D-alanine--D-alanine ligase [Brucella ceti M490/95/1]
 gi|256255368|ref|ZP_05460904.1| D-alanine--D-alanine ligase [Brucella ceti B1/94]
 gi|256369844|ref|YP_003107355.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260169100|ref|ZP_05755911.1| D-alanine--D-alanine ligase [Brucella sp. F5/99]
 gi|261219191|ref|ZP_05933472.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261222570|ref|ZP_05936851.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|261315603|ref|ZP_05954800.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261318041|ref|ZP_05957238.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261322252|ref|ZP_05961449.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261325492|ref|ZP_05964689.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261752719|ref|ZP_05996428.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|261758607|ref|ZP_06002316.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|265989072|ref|ZP_06101629.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
 gi|265998535|ref|ZP_06111092.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|256000007|gb|ACU48406.1| D-alanylalanine synthetase [Brucella microti CCM 4915]
 gi|260921154|gb|EEX87807.1| D-alanine-D-alanine ligase B [Brucella ceti B1/94]
 gi|260924280|gb|EEX90848.1| D-alanine-D-alanine ligase B [Brucella ceti M13/05/1]
 gi|261294942|gb|EEX98438.1| D-alanine-D-alanine ligase B [Brucella ceti M644/93/1]
 gi|261297264|gb|EEY00761.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis B2/94]
 gi|261301472|gb|EEY04969.1| D-alanine-D-alanine ligase B [Brucella neotomae 5K33]
 gi|261304629|gb|EEY08126.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M163/99/10]
 gi|261738591|gb|EEY26587.1| D-alanine-D-alanine ligase B [Brucella sp. F5/99]
 gi|261742472|gb|EEY30398.1| D-alanine-D-alanine ligase B [Brucella suis bv. 5 str. 513]
 gi|262553159|gb|EEZ08993.1| D-alanine-D-alanine ligase B [Brucella ceti M490/95/1]
 gi|264661269|gb|EEZ31530.1| D-alanine-D-alanine ligase B [Brucella pinnipedialis M292/94/1]
          Length = 308

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|260596517|ref|YP_003209088.1| D-alanine--D-alanine ligase [Cronobacter turicensis z3032]
 gi|260215694|emb|CBA28033.1| D-alanine--D-alanine ligase B [Cronobacter turicensis z3032]
          Length = 326

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L+ AG     +D        L     D  F  LHG
Sbjct: 25  IAVLLGGSSAEREVSLQSGSAVLAGLKQAGVDAYAVDPRDVCVTTLKEEGFDKVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q  LE L +PYT SG++ASA++MDK+R+K +    G+PV P + + R  +  
Sbjct: 85  RGGEDGTLQGTLEYLGLPYTGSGVMASAITMDKLRTKLLWQGAGLPVAPWVALERHDIRG 144

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +   Q++   L    ++ H  ++L+E++
Sbjct: 145 GLSEALSARIAALGLPVIVKPSREGSSVGMSKVDSAQALLPAL--ELAFEHDSEVLVEKW 202

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S  + +  PA I     + +Q L 
Sbjct: 203 LSGPEFTVAILGDDILPSI-RIQPAGVFYDYEAKYLSDETQYFCPAGIDAGREQALQALV 261

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GCRG  R D + D    + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 262 LEAWRVLGCRGWGRVDVMQD-SDGEFYLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 320

Query: 292 MVEDA 296
           ++E A
Sbjct: 321 ILELA 325


>gi|146296394|ref|YP_001180165.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
 gi|166198476|sp|A4XJ89|DDL_CALS8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145409970|gb|ABP66974.1| D-alanine--D-alanine ligase [Caldicellulosiruptor saccharolyticus
           DSM 8903]
          Length = 364

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 95/343 (27%), Positives = 157/343 (45%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E EVS+ S K+    L+   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEVSIVSAKSVMQNLDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTM 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  YSIECFISPDRTKKALVKIKDSEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SAL MDK  +K++    G+P    +++           F    +   S P  +KP 
Sbjct: 126 GVLSSALCMDKAFAKKLALLEGIPQGHFLVIYKDEYLSKKEYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K    + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDKDELILAIHEAFLYDTKILIEQAINAREIECAVLGNSEILVSALGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           VP  +FYSYE KY   +S  ++PAK+   +  E++ LA   ++   C G++R DF  D  
Sbjct: 246 VPSREFYSYEAKYIDGSSELIIPAKLEKQVEDEIKELAVKIYKLFECSGMARIDFFVDKE 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  Y+G  + +LL  +++ A
Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEYSGIPYPQLLDKLIQLA 348


>gi|294787903|ref|ZP_06753147.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
 gi|294484196|gb|EFG31879.1| D-alanine--D-alanine ligase B [Simonsiella muelleri ATCC 29453]
          Length = 306

 Score =  196 bits (498), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 163/299 (54%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L +   D+AFN LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGNAILTALKSKGVDAHAFDPAETELFELKNQGFDIAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
           ++GEDG VQ  LE L IPYT  G+LASA+ MDK RSK +  +  +PV P ++        
Sbjct: 67  SYGEDGTVQGALEALAIPYTGCGVLASAIGMDKYRSKLLWQALNLPVPPFVILTDTSDFT 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  IKP   GSS+G+  IK    +     +    +   +++ E+++ G E T
Sbjct: 127 AVEAQLGLPMFIKPAAEGSSVGVYKIKTVGELQQKYQELRDQHMHGEIMAEKFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+   +       +P+++FY YE KY+  ++ ++ P+ +     + ++ LA  A +AI
Sbjct: 187 CGVIYRKAFPSI-KIIPQNEFYDYEAKYNRDDTIYLCPSDLIPADEQLMRDLALKAFEAI 245

Query: 239 -GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G     R DFL D    K++ LE N  PGMT  S+ P+ A  AG +F +L + +++ A
Sbjct: 246 GGGNNCGRVDFLRDA-DGKIYILEANTLPGMTSHSLIPKSAQVAGVAFADLCIDILKTA 303


>gi|284048637|ref|YP_003398976.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
 gi|283952858|gb|ADB47661.1| D-alanine/D-alanine ligase [Acidaminococcus fermentans DSM 20731]
          Length = 310

 Score =  196 bits (497), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 105/306 (34%), Positives = 170/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AV+MGG S EREVSL++G A  +AL++ G+    ID+D   +   L      + FN +H
Sbjct: 7   VAVVMGGPSKEREVSLNTGNAILNALKEKGYDAVAIDLDPEHIVDQLKASGARVVFNAVH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q ILE+L IPYT SG+LASAL+MDK+ +K +  +  VP    I +++    
Sbjct: 67  GLYGEDGRLQGILEMLGIPYTGSGVLASALAMDKVYTKHLFQNNHVPTARCIFLDKKRDQ 126

Query: 120 SQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P V+KP   GSS+G++++K ++ +   L ++    +GD +L E +  G
Sbjct: 127 DPKARILEEIGIPCVVKPATQGSSIGVVIVKDEKQLDDALQEAF--QYGDHVLCEAFFTG 184

Query: 175 IELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+  GVM         +      P  +FY +  KY+   +T+  PA    +  + +Q++
Sbjct: 185 KEVAAGVMMGEDGRAVPMPLVLIEPHVNFYDFHNKYTKGATTYTCPAPFDAETTRRLQKI 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++A+GC G++R+D +    +     LE+N  PGMT  S+ P+ AA  G SF +L  
Sbjct: 245 AVAAYEALGCSGVARTDLML-ADNGDCIALEVNTIPGMTATSLIPKAAAAMGISFPDLCE 303

Query: 291 WMVEDA 296
            +++ A
Sbjct: 304 KILKTA 309


>gi|17986865|ref|NP_539499.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. 16M]
 gi|39931178|sp|Q8YI63|DDLB_BRUME RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|17982503|gb|AAL51763.1| d-alanine--d-alanine ligase [Brucella melitensis bv. 1 str. 16M]
          Length = 315

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 13  VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 63  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 303 LLSWMVEDASCLR 315


>gi|288556059|ref|YP_003427994.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
 gi|288547219|gb|ADC51102.1| D-alanine--D-alanine ligase [Bacillus pseudofirmus OF4]
          Length = 305

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 109/302 (36%), Positives = 167/302 (55%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS+EREVSLSSGK   +AL+  G +V  ID        L +L+ DL +  LHG
Sbjct: 3   IAVLYGGISAEREVSLSSGKGIINALKANGHEVIGIDFHPDRLEDLLNLEVDLVYIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---CGVPVCPSILVNRFT 117
            +GEDG VQA+L++L I Y  SG+  SAL+MDK +SK                   +   
Sbjct: 63  RYGEDGKVQALLDMLNINYVGSGVQGSALAMDKAKSKLFFEREGTRIAKQHVLYKHSYDP 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P V+KP + GS++GI   + ++ +   + ++      + +L+E+++ G E+
Sbjct: 123 ETTAIEIPFPVVVKPNQEGSTIGITFAENEEELLNGIEEAFKL--DETVLLEEFIKGREV 180

Query: 178 TCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T  VMG+   +        VPK+ +Y YE KY++  S H++PA++  +    VQ+ A LA
Sbjct: 181 TVAVMGNKGREKALPVVEIVPKNKYYDYEAKYAAGMSEHIVPARLTSEQTDYVQKHAVLA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           HQA+GC   SR DF+          LE+N  PGMTP S++P+ A   G S+ E++   V+
Sbjct: 241 HQALGCDIYSRVDFIVPDDGGAPVILEVNTLPGMTPTSLYPDAAREIGLSYDEMIETFVQ 300

Query: 295 DA 296
            +
Sbjct: 301 LS 302


>gi|23502299|ref|NP_698426.1| D-alanine--D-alanine ligase [Brucella suis 1330]
 gi|163843684|ref|YP_001628088.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|254704685|ref|ZP_05166513.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|261755379|ref|ZP_05999088.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
 gi|39931155|sp|Q8FZP5|DDLB_BRUSU RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|23348275|gb|AAN30341.1| D-alanine--D-alanine ligase B [Brucella suis 1330]
 gi|163674407|gb|ABY38518.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|261745132|gb|EEY33058.1| D-alanine-D-alanine ligase B [Brucella suis bv. 3 str. 686]
          Length = 308

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|251792025|ref|YP_003006745.1| D-alanine--D-alanine ligase [Aggregatibacter aphrophilus NJ8700]
 gi|247533412|gb|ACS96658.1| D-alanine--D-alanine ligase B [Aggregatibacter aphrophilus NJ8700]
          Length = 309

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A   AL   G+    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLVALRKQGYDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +     
Sbjct: 70  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKENRVN 129

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M     +  P ++KP   GSS+G+  +K  + +   +    +      +LIE+++ G
Sbjct: 130 LNPMAVVKKLGLPLMVKPSLEGSSVGLTKVKAVEELESAV--DFALKFDRTVLIEEWLAG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+    L      VP+ +FY Y+ KY S N+ +  PA +  +  +E++RL   A
Sbjct: 188 DEFTVPVLDGEVLPSI-KIVPEGEFYDYDAKYISDNTQYFCPAGLTEEREQELRRLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 247 YDVVGCRGWSRIDVMADAE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVEKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|330973385|gb|EGH73451.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 319

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|325295149|ref|YP_004281663.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
 gi|325065597|gb|ADY73604.1| D-alanine--D-alanine ligase [Desulfurobacterium thermolithotrophum
           DSM 11699]
          Length = 291

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 91/295 (30%), Positives = 160/295 (54%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S E E+S  S K+   AL+  G +V ++++D ++   L   KPD  F  LHG
Sbjct: 3   VAVIYGGPSPEAEISRKSAKSVIFALKKLGHQVFELELDENITEKLKQQKPDKVFITLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE+    YT      SA+ MDK  +K+V+ +  +PV       +     
Sbjct: 63  SPGEDGTVQGLLEIAGYNYTGCNTQTSAICMDKDITKRVLKTYNIPVPAGETFFQGDKIE 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V+KP + GS++GI V+K + S    +    ++ +  +++IE+Y++G E+T  
Sbjct: 123 PVEI--PCVVKPARTGSTVGISVVKDENSFQKAV--EEAFKYDSKIIIEEYIEGREITVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L      V ++ FY ++ KY    + + +PA + L + +++++++    + + C
Sbjct: 179 VLNGFALPPV-EIVTETGFYDFDSKYKKQTTEYKVPANLNLKLQEKLKKISEKIFKVLEC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF  D  +   + LE+N  PGMT  S+ P+ A  AG  F +L+  ++E 
Sbjct: 238 KGAIRIDFRIDKWNN-PYVLEVNTIPGMTERSLLPKAANAAGIPFEKLIEEILES 291


>gi|297539589|ref|YP_003675358.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
 gi|297258936|gb|ADI30781.1| D-alanine/D-alanine ligase [Methylotenera sp. 301]
          Length = 312

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 104/302 (34%), Positives = 156/302 (51%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL+  G      D        L     D  F  LHG
Sbjct: 13  VAVLLGGKSGEREVSLKSGGAVLAALQAQGIDAHGFDPRDKPLHDLEV--FDRVFINLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG +Q  LE+L IPYT SG++ASA+ MDK R+K +  +  V       +       
Sbjct: 71  RYGEDGCIQGALEMLHIPYTGSGVMASAIGMDKWRTKLLWRAMNVITPDFELVTATSDFA 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSSLGI  +K+   +      ++       ++ E++++G E T
Sbjct: 131 AIEKSLGLPLFVKPANEGSSLGISKVKQAGGLQAAYKIAA--EADPLVIAEKFINGGEYT 188

Query: 179 CGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            G++GD             VPK++FY +E KY   ++ ++ P  +  +   ++Q+ A  A
Sbjct: 189 VGIIGDGKGGYQALPIIRIVPKNEFYDFEAKYLRDDTEYLCPCGLSAEKEAQIQQEALQA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + IGCRG  R DFL D      ++LE+N  PGMT  S+ P  A  AG SF +L++ ++E
Sbjct: 249 FRTIGCRGWGRVDFLMDDAGNH-YFLEVNTSPGMTDHSLVPMAAKAAGISFEQLVVRILE 307

Query: 295 DA 296
            A
Sbjct: 308 LA 309


>gi|258542973|ref|YP_003188406.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256634051|dbj|BAI00027.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-01]
 gi|256637111|dbj|BAI03080.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-03]
 gi|256640163|dbj|BAI06125.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-07]
 gi|256643220|dbj|BAI09175.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-22]
 gi|256646275|dbj|BAI12223.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-26]
 gi|256649328|dbj|BAI15269.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-32]
 gi|256652314|dbj|BAI18248.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256655372|dbj|BAI21299.1| D-alanine--D-alanine ligase [Acetobacter pasteurianus IFO 3283-12]
          Length = 312

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +      L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLATLVEALNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D++++    +G Q L+E ++ G E+
Sbjct: 127 LAHADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKNW--TYGPQALVEAFIPGREI 184

Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD   ++          DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDAASAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D  +     +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPDQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASCL 299
           VE A+C 
Sbjct: 305 VEQATCR 311


>gi|319764370|ref|YP_004128307.1| d-alanine/d-alanine ligase [Alicycliphilus denitrificans BC]
 gi|330826589|ref|YP_004389892.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
 gi|317118931|gb|ADV01420.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans BC]
 gi|329311961|gb|AEB86376.1| D-alanine/D-alanine ligase [Alicycliphilus denitrificans K601]
          Length = 322

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 100/304 (32%), Positives = 152/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D   +    L        F  LHG
Sbjct: 16  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPAHADLSELKTHGYQRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P      +  +  T 
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSSAETA 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 136 QAFQELGSPMIVKPSREGSTIGLTKVTSLGQCEQAYRLAA--QHDPEVLCEQFIDGDETT 193

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C        A        V     Y Y+ KY +  + +  P+ +P    +E++R+   A+
Sbjct: 194 CPVLGQGDAAQALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEAEEREIRRIVVQAY 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+ +L L ++  
Sbjct: 254 RTLGCRGWARADIMVRKSDRKPFLLEINTSPGMTGHSLVPMSAKASGISYPDLCLRILAS 313

Query: 296 ASCL 299
           AS  
Sbjct: 314 ASLD 317


>gi|221065140|ref|ZP_03541245.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
 gi|220710163|gb|EED65531.1| D-alanine/D-alanine ligase [Comamonas testosteroni KF-1]
          Length = 323

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGTGVLAALQSKGVDAHKFDPAEQGLDQLKAQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V+      
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVDSAEATR 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +              +  +  ++L EQ++ G E T
Sbjct: 136 AALQALGAPMIVKPARDGSSIGLTKVMDADECARAY--ELAAQYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G  +          V     Y Y+ KY +  + +  P+ +P     E+QR+   A 
Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++  
Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313

Query: 296 ASCL 299
           ++  
Sbjct: 314 STLD 317


>gi|225852910|ref|YP_002733143.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|256045058|ref|ZP_05447959.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 1 str. Rev.1]
 gi|256113981|ref|ZP_05454764.1| D-alanine--D-alanine ligase [Brucella melitensis bv. 3 str. Ether]
 gi|256263609|ref|ZP_05466141.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|260565343|ref|ZP_05835827.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|265991485|ref|ZP_06104042.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995323|ref|ZP_06107880.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|225641275|gb|ACO01189.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|260151411|gb|EEW86505.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. 16M]
 gi|262766436|gb|EEZ12225.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 3 str. Ether]
 gi|263002269|gb|EEZ14844.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093660|gb|EEZ17665.1| D-alanine-D-alanine ligase B [Brucella melitensis bv. 2 str. 63/9]
 gi|326409452|gb|ADZ66517.1| D-alanine--D-alanine ligase [Brucella melitensis M28]
 gi|326539158|gb|ADZ87373.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 308

 Score =  196 bits (497), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|33598260|ref|NP_885903.1| D-alanine--D-alanine ligase [Bordetella parapertussis 12822]
 gi|39930857|sp|Q7W4B6|DDL_BORPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33566818|emb|CAE39033.1| D-alanine--D-alanine ligase B [Bordetella parapertussis]
          Length = 316

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 148/304 (48%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SGK    AL  AG      D        LA    +  F  LHG
Sbjct: 8   VGVLYGGRSAEREVSLMSGKGVHEALLSAGVDAHLFDTGERSLADLAAAGFERVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
            +GEDG +Q  LELL IPYT SG LAS+LSMDK+ +K+V    G+P     +   +    
Sbjct: 68  RYGEDGTLQGALELLGIPYTGSGPLASSLSMDKIMTKRVWLQHGLPTPAFEVLGGSTELR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GS++GI  +     +        +     ++L EQ++ G ELT
Sbjct: 128 LVPDRLGLPLILKPPHEGSTVGITKVAGYSDMKAAY--ELAARFDAEVLAEQFITGRELT 185

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                    A        V     Y YE KY S ++ +  PA +P D+  +V  +A  A+
Sbjct: 186 VAVLGSGAAARALPVIEIVAPGGNYDYEHKYFSDDTQYFCPADLPADVAADVAAVAERAY 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GC G  R DF+ D    + + LE+N  PGMT  S+ P  A   G S+ +L + ++  
Sbjct: 246 AALGCEGWGRVDFILDRE-NRPWLLEMNTSPGMTGHSLVPMAARAVGMSYADLCVAILAK 304

Query: 296 ASCL 299
           A+C 
Sbjct: 305 AACK 308


>gi|296532817|ref|ZP_06895492.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
 gi|296266854|gb|EFH12804.1| D-alanine--D-alanine ligase [Roseomonas cervicalis ATCC 49957]
          Length = 303

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 131/299 (43%), Positives = 192/299 (64%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           +AVL GGIS+EREVSLS+G    +AL  AGF+V+ ++V   +  ++A L   KPD  FN 
Sbjct: 4   VAVLFGGISTEREVSLSTGGQVVTALRQAGFQVTPVEVTSDLAALVAALQAAKPDAVFNA 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L+ L IPYTHSG+ AS+++MDK  +K V ++ G+P+    +V    
Sbjct: 64  LHGRFGEDGCVQGVLDWLGIPYTHSGVRASSVAMDKAAAKAVFAAHGLPLAEHRVVTPAE 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYV+KP+  GSS+G+ ++K+  +   ++ ++     G Q++ E+Y+ G EL
Sbjct: 124 LEAADPLERPYVVKPVSEGSSVGVEILKEGDNRRAEIARNW--RFGPQIMAEEYIAGREL 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD  L           FY Y+ KY++  S H +PA+IP D+ +  +  A  AHQA
Sbjct: 182 TVAVMGDRPL-AVTEIGTGHVFYDYDAKYAAGGSRHTIPAEIPGDVAEAAKAAALRAHQA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG+SRSDF +D  + K+  LE+N QPG+TP S+ PE AA+ G SF EL  WMV +A
Sbjct: 241 LGCRGVSRSDFRYDDATGKLALLEVNTQPGLTPTSLVPEQAAHCGISFAELCAWMVREA 299


>gi|66047327|ref|YP_237168.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
 gi|63258034|gb|AAY39130.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 319

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 163/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPAHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|123441034|ref|YP_001005023.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122087995|emb|CAL10783.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 306

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGASAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR   + 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFET 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L    ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSAL--VEAFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSAELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D    + + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILTLA 305


>gi|22127498|ref|NP_670921.1| D-alanine--D-alanine ligase [Yersinia pestis KIM 10]
 gi|45443359|ref|NP_994898.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Microtus str.
           91001]
 gi|51595040|ref|YP_069231.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 32953]
 gi|108809535|ref|YP_653451.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|108810588|ref|YP_646355.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|145600340|ref|YP_001164416.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|150260408|ref|ZP_01917136.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|153949608|ref|YP_001402342.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162421556|ref|YP_001607293.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165928190|ref|ZP_02224022.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165937767|ref|ZP_02226328.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|166008968|ref|ZP_02229866.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166212032|ref|ZP_02238067.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|167401219|ref|ZP_02306719.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167421968|ref|ZP_02313721.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167426436|ref|ZP_02318189.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|167469526|ref|ZP_02334230.1| D-alanine--D-alanine ligase [Yersinia pestis FV-1]
 gi|170025731|ref|YP_001722236.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186894046|ref|YP_001871158.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|218927753|ref|YP_002345628.1| D-alanine--D-alanine ligase [Yersinia pestis CO92]
 gi|229837052|ref|ZP_04457217.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|229840445|ref|ZP_04460604.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229843013|ref|ZP_04463163.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229900780|ref|ZP_04515904.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|270487850|ref|ZP_06204924.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294502645|ref|YP_003566707.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|22095560|sp|Q8ZIE7|DDL_YERPE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81640386|sp|Q66EK3|DDL_YERPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123073601|sp|Q1CMM5|DDL_YERPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123372037|sp|Q1C216|DDL_YERPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198514|sp|A4TQ81|DDL_YERPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012333|sp|A7FM64|DDL_YERP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226696394|sp|A9R122|DDL_YERPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486025|sp|B2K4E8|DDL_YERPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486026|sp|B1JK79|DDL_YERPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21960595|gb|AAM87172.1|AE013964_8 D-alanine-D-alanine ligase B [Yersinia pestis KIM 10]
 gi|45438228|gb|AAS63775.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Microtus str.
           91001]
 gi|51588322|emb|CAH19930.1| D-alanine-D-alanine ligase B, affects cell division [Yersinia
           pseudotuberculosis IP 32953]
 gi|108774236|gb|ABG16755.1| D-alanine--D-alanine ligase [Yersinia pestis Nepal516]
 gi|108781448|gb|ABG15506.1| D-alanine--D-alanine ligase [Yersinia pestis Antiqua]
 gi|115346364|emb|CAL19236.1| D-alanine--D-alanine ligase B [Yersinia pestis CO92]
 gi|145212036|gb|ABP41443.1| D-alanine--D-alanine ligase [Yersinia pestis Pestoides F]
 gi|149289816|gb|EDM39893.1| D-alanine--D-alanine ligase B [Yersinia pestis CA88-4125]
 gi|152961103|gb|ABS48564.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis IP 31758]
 gi|162354371|gb|ABX88319.1| D-alanine--D-alanine ligase [Yersinia pestis Angola]
 gi|165914179|gb|EDR32795.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           IP275]
 gi|165919801|gb|EDR37102.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           F1991016]
 gi|165992307|gb|EDR44608.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           E1979001]
 gi|166206778|gb|EDR51258.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           B42003004]
 gi|166960105|gb|EDR56126.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Orientalis str.
           MG05-1020]
 gi|167049244|gb|EDR60652.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Antiqua str.
           UG05-0454]
 gi|167054534|gb|EDR64342.1| D-alanine--D-alanine ligase [Yersinia pestis biovar Mediaevalis
           str. K1973002]
 gi|169752265|gb|ACA69783.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis YPIII]
 gi|186697072|gb|ACC87701.1| D-alanine--D-alanine ligase [Yersinia pseudotuberculosis PB1/+]
 gi|229682119|gb|EEO78211.1| D-alanine--D-alanine ligase B [Yersinia pestis Nepal516]
 gi|229689889|gb|EEO81948.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696811|gb|EEO86858.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229705995|gb|EEO92004.1| D-alanine--D-alanine ligase B [Yersinia pestis Pestoides A]
 gi|262360675|gb|ACY57396.1| D-alanylalanine synthetase [Yersinia pestis D106004]
 gi|262364622|gb|ACY61179.1| D-alanylalanine synthetase [Yersinia pestis D182038]
 gi|270336354|gb|EFA47131.1| D-ala D-ala ligase N-terminal domain protein [Yersinia pestis KIM
           D27]
 gi|294353104|gb|ADE63445.1| D-alanylalanine synthetase [Yersinia pestis Z176003]
 gi|320016923|gb|ADW00495.1| D-alanine--D-alanine ligase B [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 306

 Score =  195 bits (496), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGIDAYGVDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   + 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQALGLPISPYVALNRQQFET 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +     +   L    ++ H   +LIE++
Sbjct: 125 LSPEELVACVAKLGLPLIVKPSHEGSSVGMSKVDHASELQKAL--VEAFQHDSDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY Y+ KY S  + +  P+ +  +  +++  LA
Sbjct: 183 LSGPEFTVAILGDEVLPSI-RIQPPGVFYDYDAKYLSDKTQYFCPSGLSDESEQQLAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+ A+ C G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYHALDCSGWGRVDVMQD-RDGHFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILMLA 305


>gi|189423736|ref|YP_001950913.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
 gi|229485956|sp|B3E3X9|DDL_GEOLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189419995|gb|ACD94393.1| D-alanine/D-alanine ligase [Geobacter lovleyi SZ]
          Length = 313

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 117/300 (39%), Positives = 183/300 (61%), Gaps = 7/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+ER+VSL SG A   AL   G+  + +DV  +V L+L   K DLAF  LHG
Sbjct: 11  IGVLMGGLSAERDVSLKSGMAVHQALLAMGYDSTALDVRHNVALILREEKIDLAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LEL++IPYT SG+LASAL+M K+ SKQ  ++ G+ + P   V +    +
Sbjct: 71  RYGEDGCIQGLLELMQIPYTGSGVLASALAMHKLYSKQAFAAAGLTITPYATVRQGDRCN 130

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +    P V+KP++ GSS+G+ ++KK + +   L    ++ +   +L+E+Y+ G E+ 
Sbjct: 131 AEQLPFGLPVVVKPVQEGSSVGVTIVKKPEDLQAAL--DEAFRYDTLVLVEKYIKGQEVQ 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ +  +      VPK++FY +E KYS   + H+ PA++   +Y++VQ+    AHQA+
Sbjct: 189 VGILANQPIGAI-EIVPKNEFYDFEAKYSDGMAEHIFPARLAEPLYQKVQQQGLQAHQAL 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-AGYSFRELLLWMVEDAS 297
           GC G  R DFL    +   + LE+N  PGMT +S+ PE+A   AG SF  L+  +   A+
Sbjct: 248 GCDGYCRVDFLVTE-NGDCYLLEVNTLPGMTALSLLPEIAQKGAGLSFEALVEQIACSAA 306


>gi|310823485|ref|YP_003955843.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396557|gb|ADO74016.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 314

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 113/301 (37%), Positives = 169/301 (56%), Gaps = 7/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+SSER+VSL +G A A AL   G+ V +IDV + V   L   K D+A+  LHG
Sbjct: 14  VGVLLGGLSSERDVSLRTGAAVAKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASA+ MDK+ +K + ++ G+P  P       T   
Sbjct: 74  RYGEDGSIQGLLESLFIPYTGSGVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAR 133

Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +       S P V+KP + GSS+G+ V K  ++    +    +  +   LL+EQ++ G E
Sbjct: 134 EAADTLPFSYPVVVKPSREGSSVGVHVCKTKEAYLAAV--EDAARYAGTLLVEQFIPGRE 191

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+ D +L V E+ V +  +       S   + ++ PA +P D Y+ V  +   AH+
Sbjct: 192 VQGAVLDDEALGVIEVVVAREFYDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHR 251

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC+G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   +++ A
Sbjct: 252 ALGCQGASRSDVIITE-GGDVFVLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGA 310

Query: 297 S 297
           S
Sbjct: 311 S 311


>gi|330895225|gb|EGH27563.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. japonica str.
           M301072PT]
          Length = 319

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|329115580|ref|ZP_08244302.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
 gi|326695008|gb|EGE46727.1| D-alanine--D-alanine ligase [Acetobacter pomorum DM001]
          Length = 312

 Score =  195 bits (495), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 131/307 (42%), Positives = 181/307 (58%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNV 57
           + VLMGG+SSER VSLSSG+  A AL   G+ V  +D    +      L   KPD+ FN 
Sbjct: 7   VTVLMGGMSSERVVSLSSGQGVAEALRSKGYDVCTLDAQADLAALVETLNTQKPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q IL+ + IPYTHSGI ASA +MDK  ++ +  + G+PV   ++V+  T
Sbjct: 67  LHGRFGEDGCIQGILDWMGIPYTHSGIRASATAMDKAAARAIFQTAGLPVAEGMVVDIAT 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +     +  PYV+KPL  GSS+G+ +++   +   D++++     G Q L+E ++ G E+
Sbjct: 127 LADADPLPTPYVVKPLNEGSSVGVSIVRTGSNTRADIVKNW--TFGPQALVEAFIPGREI 184

Query: 178 TCGVMGDA--SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           T GVMGD   ++          DFY Y+ KY    S HVLPA+I     K    +A  AH
Sbjct: 185 TVGVMGDRALTITDITPTGTGHDFYDYDSKYQVGGSAHVLPAQIDASSAKLALEVAVKAH 244

Query: 236 QAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           QA+GC G SRSDF  D  + +   +  LE+N QPGMT  S+ PE AAY G S+ EL  W+
Sbjct: 245 QALGCSGASRSDFRLDDTNPEQPHLILLEVNTQPGMTATSLLPEQAAYCGISYPELCAWL 304

Query: 293 VEDASCL 299
           VE A+C 
Sbjct: 305 VEQATCR 311


>gi|107100005|ref|ZP_01363923.1| hypothetical protein PaerPA_01001026 [Pseudomonas aeruginosa PACS2]
          Length = 319

 Score =  195 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLANEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|227327089|ref|ZP_03831113.1| D-alanine--D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 306

 Score =  195 bits (495), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+DAG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKDAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TAANALLAKFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S ++ +  P+ +P +  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLPDEQEQALAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILERA 305


>gi|90416338|ref|ZP_01224270.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
 gi|90332063|gb|EAS47277.1| D-alanylalanine synthetase [marine gamma proteobacterium HTCC2207]
          Length = 302

 Score =  195 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG SSEREVSL SG+A   AL + G  V  ID D ++   L   + DL F  LHG
Sbjct: 8   VGLLYGGTSSEREVSLMSGQAIHRALLNMGVDVVAIDADDNLLQSLPGHQLDLVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L++PYT SG+LASAL+MDK+R KQ+    G+P     L+   +  S
Sbjct: 68  PGGEDGTLQGALEYLKLPYTGSGVLASALAMDKLRCKQMWQGIGLPTTDFALLEADSDWS 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +    ++KP   GSS+G+      + +      + +  +   ++ E  + G E T
Sbjct: 128 AELQRLGGQVMVKPAAEGSSIGMSCAATPEQLQAA--WADASQYNTAVIAEPLLPGPEYT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L         ++FY Y+ KY S  + ++ P+++     +E+Q L   A  ++
Sbjct: 186 VAILDGQVLPSI-RIESNAEFYDYQAKYFSDQTQYLCPSELSESREQELQTLCLQAFDSV 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R D + D    +   LE+N  PGMT  S+ P  A  AG SF +L+  ++  A
Sbjct: 245 GCRGWGRVDVMVDHQ-GQFQLLEVNTVPGMTSHSLVPMAAKAAGLSFDQLVEKILAGA 301


>gi|325496028|gb|EGC93887.1| D-alanine--D-alanine ligase [Escherichia fergusonii ECD227]
          Length = 309

 Score =  195 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 68  RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 127

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P ++KP + GSS+G+  +  + S+   L    ++ H D++L+E++
Sbjct: 128 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDEVLVEKW 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  P+ +  +    ++ L 
Sbjct: 186 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 245 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 303

Query: 292 MVEDA 296
           ++E A
Sbjct: 304 ILELA 308


>gi|313106940|ref|ZP_07793143.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
 gi|310879645|gb|EFQ38239.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa 39016]
          Length = 319

 Score =  195 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|218547549|ref|YP_002381340.1| D-alanine--D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|218355090|emb|CAQ87697.1| D-alanine:D-alanine ligase [Escherichia fergusonii ATCC 35469]
 gi|324112495|gb|EGC06472.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 306

 Score =  195 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGVDAYPVDPKDVDVAQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVAITRTEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P ++KP + GSS+G+  +  + S+   L    ++ H D++L+E++
Sbjct: 125 GLSDEVVKQISALGLPLIVKPSREGSSVGMSKVVAENSVENAL--KLAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  P+ +  +    ++ L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEAEQESILKSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 QKAWTTLGCKGWGRIDVMLD-DDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|312173520|emb|CBX81774.1| D-alanine-D-alanine ligase [Erwinia amylovora ATCC BAA-2158]
          Length = 306

 Score =  195 bits (494), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG      L++AG     +D+       L     + AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGTXVLKGLQEAGIDAYPVDIRDFPVTRLKEEGFEKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+RSK +   CG+PV P + + R  MD 
Sbjct: 65  RGGEDGTLQGVLEFLNIPYTGSGVMASAITMDKLRSKYLWQGCGLPVSPFVALTRAQMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   S   +  P  +KP + GSS+GI  + +   +   L    ++    ++L+E +
Sbjct: 125 GLDAQVMASIAALGLPLFVKPSREGSSVGISRVNQASELQAAL--EEAFRFDHEVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T GV+G   L         S+FY Y+ KY S  + +  P+ +  D   E++ L 
Sbjct: 183 LSGPEYTVGVLGTDILPSI-RIQTASEFYDYDAKYFSDETQYFCPSGLSADQEAELRELT 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC G  R D +      + + LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 ISAWNALGCSGWGRVDVMM-GGDGRFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332160414|ref|YP_004296991.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|318607125|emb|CBY28623.1| D-alanine--D-alanine ligase B [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325664644|gb|ADZ41288.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|330859328|emb|CBX69675.1| D-alanine--D-alanine ligase [Yersinia enterocolitica W22703]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L +AG     ID        L     D  F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGEAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   + 
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFET 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +   +   L    ++ H   +LIE++
Sbjct: 125 LSSEELAACVAKLGLPLIVKPSHEGSSVGMSKVDQANQLHSAL--VEAFRHDTDVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L    I  P   FY YE KY S  + +  P+ +  ++ +++  L+
Sbjct: 183 LSGPEFTVAILGNDVLPSIRIQAP-GVFYDYEAKYLSDETQYFCPSGLSSELEQQLAALS 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LQAYQALGCSGWGRVDVMQD-SDGCFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILTLA 305


>gi|264680244|ref|YP_003280154.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
 gi|262210760|gb|ACY34858.1| D-alanine--D-alanine ligase [Comamonas testosteroni CNB-2]
          Length = 323

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V       
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +  P ++KP + GSS+G+  +              +  +  ++L EQ++ G E T
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAY--ELAAQYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G  +          V     Y Y+ KY +  + +  P+ +P     E+QR+   A 
Sbjct: 194 CPVLGTGAQAGALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++  
Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313

Query: 296 ASCL 299
           ++  
Sbjct: 314 STLD 317


>gi|82775499|ref|YP_401846.1| D-alanine--D-alanine ligase [Shigella dysenteriae Sd197]
 gi|81239647|gb|ABB60357.1| D-alanine-D-alanine ligase B [Shigella dysenteriae Sd197]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVVPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|50122735|ref|YP_051902.1| D-alanine--D-alanine ligase [Pectobacterium atrosepticum SCRI1043]
 gi|81643890|sp|Q6D0I5|DDL_ERWCT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49613261|emb|CAG76712.1| D-alanine--D-alanine ligase B [Pectobacterium atrosepticum
           SCRI1043]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDFPVTTLKEEGFTNVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYLD 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 TEANTLLAQFTHLGLPLIVKPSREGSSVGMSKVNTLSDLPAAL--EEAFRHDDDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S ++ +  P+ +  +  + +  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLSDEQEQALAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ C G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVDCSGWGRVDFMLD-SDDAFYLLEVNTSPGMTSHSLVPMAARQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|194439412|ref|ZP_03071489.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|194421671|gb|EDX37681.1| D-alanine--D-alanine ligase B [Escherichia coli 101-1]
 gi|323970764|gb|EGB66018.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P +++ R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVVLTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|254238927|ref|ZP_04932250.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|254244779|ref|ZP_04938101.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
 gi|126170858|gb|EAZ56369.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa C3719]
 gi|126198157|gb|EAZ62220.1| D-alanine-D-alanine ligase [Pseudomonas aeruginosa 2192]
          Length = 319

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAK-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|160896919|ref|YP_001562501.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
 gi|229485953|sp|A9BUK8|DDL_DELAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160362503|gb|ABX34116.1| D-alanine--D-alanine ligase [Delftia acidovorans SPH-1]
          Length = 326

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV       
Sbjct: 76  RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GS++G+  +   +      + +S   +  ++L E++++G E T
Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECDQAYVLAS--RYDPEVLCEEFIEGDETT 193

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C        A        V     Y Y+ KY + ++ +  P+ +P +   E++R+   A 
Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++  
Sbjct: 254 RTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILAS 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 AALD 317


>gi|15599606|ref|NP_253100.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|296391119|ref|ZP_06880594.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAb1]
 gi|39931188|sp|Q9LCT6|DDLB_PSEAE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|9950642|gb|AAG07798.1|AE004856_9 D-alanine--D-alanine ligase [Pseudomonas aeruginosa PAO1]
 gi|6715617|gb|AAF26456.1| D-alanine:D-alanine ligase B [Pseudomonas aeruginosa PAO1]
          Length = 319

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|289624984|ref|ZP_06457938.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           NCPPB3681]
 gi|289647042|ref|ZP_06478385.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           2250]
 gi|330868716|gb|EGH03425.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 319

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|220933952|ref|YP_002512851.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219995262|gb|ACL71864.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 309

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 160/304 (52%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG     AL+ AG     ID  R V  VL     D  FN+LHG
Sbjct: 9   VAVLLGGWSAEREISLISGGEVLKALQAAGVDAHGIDAGRDVLEVLKAGGFDRVFNMLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
             GEDG++Q  LEL+ +P T SG+L SA+SMDK+ +K++    G+P         +   +
Sbjct: 69  RGGEDGVIQGALELIGLPCTGSGVLGSAVSMDKLMTKRLWRGAGLPTPDYQVLDGDTDWV 128

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  ++    +P    ++++   G  +  E++V G E T
Sbjct: 129 VVASGLGLPLIVKPALEGSSIGMSKVETVGDLPEAYARAAAC--GGPVFAERWVTGTEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L +  +  P++  Y YE KY +  + + +P  +   + +  Q LA  A +A+
Sbjct: 187 AAILEGEPLPLIRLETPRAF-YDYEAKYKAETTRYHVPCGLEAAVEQRFQSLALQAFEAV 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DA 296
           G RG  R D + D +    + +E+N  PGMT  S+ P  A  AG  F+ L+L ++    A
Sbjct: 246 GARGWGRVDLMVDRV-GVPWLIEVNTVPGMTDHSLVPMAARAAGLDFQALVLRILAGTLA 304

Query: 297 SCLR 300
           S  R
Sbjct: 305 SGER 308


>gi|268591753|ref|ZP_06125974.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
 gi|291312714|gb|EFE53167.1| D-alanine--D-alanine ligase B [Providencia rettgeri DSM 1131]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L  AG     ID        L     +  F  LHG
Sbjct: 5   VAVLLGGSSAEREVSLQSGNAVLAGLRQAGIDAHPIDPQDFPVETLKDAGFNKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASALSMDK+R+KQ+    G+ V P + + +     
Sbjct: 65  RGGEDGTLQGLLETLNLPYTGSGVMASALSMDKLRTKQLWQGAGLSVSPYVYLTKQQYKQ 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  +   +++P  L    ++   + LLIE++
Sbjct: 125 ASYEQIVAKVQFLGLPLIVKPSLEGSSVGMSKVDNLEALPAAL--DLAFQFDETLLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD +L       P   FY YE KY S  + +  P+ +   +  E+  LA
Sbjct: 183 LSGPEFTVAVLGDNTLPPI-RIQPPGIFYDYEAKYLSDETQYFCPSGLDEQLESELADLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+Q +GC G  R D + D  + + + LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAYQVVGCEGWGRVDVMQD-SNGQFYLLEVNTSPGMTSHSLVPMAARQAGMSFSQLVVQ 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILRLA 305


>gi|309787232|ref|ZP_07681844.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
 gi|308924810|gb|EFP70305.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1617]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGQEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|253774878|ref|YP_003037709.1| D-alanine--D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|254160214|ref|YP_003043322.1| D-alanine--D-alanine ligase [Escherichia coli B str. REL606]
 gi|297518217|ref|ZP_06936603.1| D-alanine--D-alanine ligase [Escherichia coli OP50]
 gi|300931781|ref|ZP_07147081.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|242375928|emb|CAQ30609.1| D-alanine-D-alanine ligase B [Escherichia coli BL21(DE3)]
 gi|253325922|gb|ACT30524.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972115|gb|ACT37786.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976324|gb|ACT41994.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|300460441|gb|EFK23934.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|323960038|gb|EGB55684.1| D-alanine-D-alanine ligase [Escherichia coli H489]
          Length = 306

 Score =  195 bits (494), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILDEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|222872735|gb|EEF09866.1| predicted protein [Populus trichocarpa]
          Length = 326

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG     AL   G      D        L     D  F  LHG
Sbjct: 16  VAVLLGGRSAEREVSLMSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV       
Sbjct: 76  RYGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETR 135

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GS++G+  +   +      + +S   +  ++L E++++G E T
Sbjct: 136 AALQALGAPMIVKPSREGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETT 193

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C        A        V     Y Y+ KY + ++ +  P+ +P +   E++R+   A 
Sbjct: 194 CPVLGTGEGAHALPVIRIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG SR+D +     RK F LEIN  PGMT  S+ P  A   G S+  L L ++  
Sbjct: 254 RTLGCRGWSRADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAIGVSYENLCLGILAS 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 AALD 317


>gi|218698515|ref|YP_002406144.1| D-alanine--D-alanine ligase [Escherichia coli IAI39]
 gi|218368501|emb|CAR16236.1| D-alanine:D-alanine ligase [Escherichia coli IAI39]
          Length = 306

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVTLTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|237729390|ref|ZP_04559871.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
 gi|226909119|gb|EEH95037.1| D-alanine-D-alanine ligase [Citrobacter sp. 30_2]
          Length = 306

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  ++++ ++   L  + ++ H +++LIE++
Sbjct: 125 GLSDEVVTEISALGLPLIVKPSREGSSVGMSKVEEENALHGAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA + ++    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEVEQEARLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|218552675|ref|YP_002385588.1| D-alanine--D-alanine ligase [Escherichia coli IAI1]
 gi|218693561|ref|YP_002401228.1| D-alanine--D-alanine ligase [Escherichia coli 55989]
 gi|256020070|ref|ZP_05433935.1| D-alanine--D-alanine ligase [Shigella sp. D9]
 gi|332281220|ref|ZP_08393633.1| D-alanine:D-alanine ligase [Shigella sp. D9]
 gi|218350293|emb|CAU95976.1| D-alanine:D-alanine ligase [Escherichia coli 55989]
 gi|218359443|emb|CAQ96981.1| D-alanine:D-alanine ligase [Escherichia coli IAI1]
 gi|324118442|gb|EGC12336.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|332103572|gb|EGJ06918.1| D-alanine:D-alanine ligase [Shigella sp. D9]
          Length = 306

 Score =  195 bits (494), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|126729256|ref|ZP_01745070.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
 gi|126710246|gb|EBA09298.1| D-alanine--D-alanine ligase [Sagittula stellata E-37]
          Length = 296

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 127/301 (42%), Positives = 186/301 (61%), Gaps = 8/301 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG S+EREVSL SG+ CA+AL   G++V ++D    V   L  + PD+ FN LHG 
Sbjct: 2   AVLKGGPSAEREVSLVSGRECAAALRGEGYEVIELDAGPDVAERLKEIAPDVVFNALHGR 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           +GEDG +Q +LE L +PYTHSG+LAS+L++DK ++K    + G+PV  S L  +  + + 
Sbjct: 62  WGEDGCIQGMLEWLRLPYTHSGVLASSLAIDKEKTKAAYRTAGLPVAESSLARKSDVMAA 121

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H+++PPYV+KP   GSS+G+ ++ ++ + P  L ++      + +++EQ+V G ELT  V
Sbjct: 122 HVMAPPYVVKPYNEGSSVGVYLVHEEANGPPVLDETMP----EVVMVEQFVPGRELTATV 177

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           MG  +  +    +    +Y Y+ KY +  S H+ PA++P DI +     A  AH A+GCR
Sbjct: 178 MGGRA--LGVTEILTDGWYDYDAKYKAGGSRHICPAELPQDITEACLDYALRAHAALGCR 235

Query: 242 GISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+SR+DF +D       +  LE N QPGMTP S+ PE     G SF +   WMVEDASC 
Sbjct: 236 GVSRTDFRWDDTQELAGLRLLETNTQPGMTPTSLSPEHGQLVGMSFGQFCAWMVEDASCD 295

Query: 300 R 300
           R
Sbjct: 296 R 296


>gi|299533116|ref|ZP_07046501.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
 gi|298718893|gb|EFI59865.1| D-alanine--D-alanine ligase [Comamonas testosteroni S44]
          Length = 323

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG    +AL+  G    + D        L     D  F  LHG
Sbjct: 16  VAVLMGGRSSEREVSLMSGAGVLAALQSKGVDAHKFDPAEQGLEQLKVQGFDRCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL+IPYT SG++AS+++MDK+ +K++    G+P     +V       
Sbjct: 76  RYGEDGTVQGALELLDIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRMVASAAETR 135

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +  P ++KP + GSS+G+  +              +  +  ++L EQ++ G E T
Sbjct: 136 AALEALGAPMIVKPARDGSSIGLTKVMNADECAKAY--ELAAQYDAEVLCEQFIAGDETT 193

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G  +          V     Y Y+ KY +  + +  P+ +P     E+QR+   A 
Sbjct: 194 CPVLGTGAKAAALPVIRIVAPEGNYDYQNKYFTDTTQYHCPSGLPAAEEAEIQRIVEKAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A  +G S+  L L ++  
Sbjct: 254 RTLGCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMAARASGVSYENLCLGILAM 313

Query: 296 ASCL 299
           ++  
Sbjct: 314 STLD 317


>gi|194434413|ref|ZP_03066675.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|194417329|gb|EDX33436.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 1012]
 gi|332098163|gb|EGJ03136.1| D-alanine--D-alanine ligase B [Shigella dysenteriae 155-74]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMSLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|222530007|ref|YP_002573889.1| D-alanyl-alanine synthetase A [Caldicellulosiruptor bescii DSM
           6725]
 gi|254767717|sp|B9MLC6|DDL_ANATD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222456854|gb|ACM61116.1| D-alanine/D-alanine ligase [Caldicellulosiruptor bescii DSM 6725]
          Length = 364

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   ++V  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEVIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKVKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAGRIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|253689951|ref|YP_003019141.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|259645170|sp|C6DEU1|DDL_PECCP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251756529|gb|ACT14605.1| D-alanine/D-alanine ligase [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 167/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGQAVLAGLKEAGINAHAVDTRDVSVTTLKEEGFTKIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L +PYT SG++ASAL+MDK+R+KQV  + G+PV P + ++R     
Sbjct: 65  RGGEDGTLQGVLEFLGLPYTGSGVMASALTMDKLRTKQVWQAVGLPVSPYVALDRRQYSE 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +     +P  L    ++ H D +L+E++
Sbjct: 125 MAANALLATFTHLGLPLIVKPSREGSSVGMSKVNTLSELPAAL--EEAFRHDDDILVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L       P   FY YE KY S ++ +  P+ +  +  +E+  LA
Sbjct: 183 LSGPEYTVAILGDEVLPSI-RIQPAGTFYDYEAKYLSDDTQYFCPSGLSDEKEQELAGLA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R DF+ D      + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 242 MAAYRAVGCSGWGRVDFMLD-SDGAFYLLEVNTSPGMTSHSLVPMAAHQRGLTFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|82542696|ref|YP_406643.1| D-alanine--D-alanine ligase [Shigella boydii Sb227]
 gi|187730657|ref|YP_001878902.1| D-alanine--D-alanine ligase [Shigella boydii CDC 3083-94]
 gi|81244107|gb|ABB64815.1| D-alanine-D-alanine ligase B [Shigella boydii Sb227]
 gi|187427649|gb|ACD06923.1| D-alanine--D-alanine ligase B [Shigella boydii CDC 3083-94]
 gi|320172817|gb|EFW48049.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
 gi|320183621|gb|EFW58464.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098881|gb|EGJ03832.1| D-alanine--D-alanine ligase B [Shigella boydii 3594-74]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|289677706|ref|ZP_06498596.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae FF5]
          Length = 307

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 109/291 (37%), Positives = 160/291 (54%), Gaps = 6/291 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SGKA  SAL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGKAVLSALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAATELGLPLIVKPAHEGSSIGMAKVNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A +AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACEAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           G  G +R+D + D    K + LE+N  PGMT  S+ P  A  AG  F++L+
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLV 307


>gi|15602009|ref|NP_245081.1| D-alanine--D-alanine ligase [Pasteurella multocida subsp. multocida
           str. Pm70]
 gi|13431429|sp|P57819|DDL_PASMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12720361|gb|AAK02228.1| DdlB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 309

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 173/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL  AGF    ID        L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLDSGQAVLNALLSAGFDAHPIDPKTFPVATLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ SAL+MDKMR+K +  + G+PV    +V +  +  
Sbjct: 70  RGGEDGTMQGLLEQIGIPYTGCGVMTSALTMDKMRTKMLWKAFGLPVAEMEIVTKANVGE 129

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K+ + +   +    +  + D +LIE+++ G
Sbjct: 130 LNPSAVVEKLGLPVMVKPSLEGSSVGLTKVKRVEDLKSAV--DFALKYDDTVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+ +  L      VP+ +FY YE KY S N+ +  P+ +  +   E+++L   A
Sbjct: 188 AEFTVPVLDNEVLPSI-RIVPEGEFYDYEAKYISDNTQYFCPSGLSAEREDELKQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D  +     +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDG-NDAFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305

Query: 295 DAS 297
            ++
Sbjct: 306 LSA 308


>gi|157155564|ref|YP_001461262.1| D-alanine--D-alanine ligase [Escherichia coli E24377A]
 gi|157077594|gb|ABV17302.1| D-alanine--D-alanine ligase B [Escherichia coli E24377A]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVSPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|16128085|ref|NP_414634.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|74310711|ref|YP_309130.1| D-alanine--D-alanine ligase [Shigella sonnei Ss046]
 gi|89106975|ref|AP_000755.1| D-Alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           W3110]
 gi|157159563|ref|YP_001456881.1| D-alanine--D-alanine ligase [Escherichia coli HS]
 gi|170021552|ref|YP_001726506.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|170079731|ref|YP_001729051.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188494627|ref|ZP_03001897.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|193065887|ref|ZP_03046948.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194429381|ref|ZP_03061906.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209917285|ref|YP_002291369.1| D-alanine--D-alanine ligase [Escherichia coli SE11]
 gi|218703352|ref|YP_002410871.1| D-alanine--D-alanine ligase [Escherichia coli UMN026]
 gi|238899493|ref|YP_002925289.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|256025406|ref|ZP_05439271.1| D-alanine--D-alanine ligase [Escherichia sp. 4_1_40B]
 gi|260866245|ref|YP_003232647.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|293403164|ref|ZP_06647261.1| ddl [Escherichia coli FVEC1412]
 gi|293408183|ref|ZP_06652023.1| conserved hypothetical protein [Escherichia coli B354]
 gi|293417968|ref|ZP_06660590.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|300816130|ref|ZP_07096353.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300821903|ref|ZP_07102047.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300900877|ref|ZP_07119014.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300905501|ref|ZP_07123265.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300919647|ref|ZP_07136138.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300923126|ref|ZP_07139186.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300949890|ref|ZP_07163853.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300955958|ref|ZP_07168291.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301026100|ref|ZP_07189575.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301028575|ref|ZP_07191805.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301303807|ref|ZP_07209927.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301330127|ref|ZP_07222796.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301646404|ref|ZP_07246286.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307136693|ref|ZP_07496049.1| D-alanine--D-alanine ligase [Escherichia coli H736]
 gi|307311457|ref|ZP_07591099.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|312970186|ref|ZP_07784368.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|331640545|ref|ZP_08341693.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331661466|ref|ZP_08362390.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331666329|ref|ZP_08367210.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331680666|ref|ZP_08381325.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331681477|ref|ZP_08382114.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|118407|sp|P07862|DDLB_ECOLI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|157831485|pdb|1IOV|A Chain A, Complex Of D-Ala:d-Ala Ligase With Adp And A Phosphoryl
           Phosphonate
 gi|157834791|pdb|2DLN|A Chain A, Vancomycin Resistance: Structure Of D-Alanine:d-Alanine
           Ligase At 2.3 Angstroms Resolution
 gi|40860|emb|CAA38869.1| D-Ala:D-Ala ligase (Ddl) [Escherichia coli]
 gi|145724|gb|AAA23672.1| ddl cell wall enzyme [Escherichia coli]
 gi|146030|gb|AAA23815.1| D-alanine:D-alanine ligase [Escherichia coli]
 gi|1786280|gb|AAC73203.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           MG1655]
 gi|21321973|dbj|BAB96660.1| D-Alanine:D-alanine ligase [Escherichia coli str. K12 substr.
           W3110]
 gi|73854188|gb|AAZ86895.1| D-alanine-D-alanine ligase B [Shigella sonnei Ss046]
 gi|157065243|gb|ABV04498.1| D-alanine--D-alanine ligase B [Escherichia coli HS]
 gi|169756480|gb|ACA79179.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887566|gb|ACB01273.1| D-alanine:D-alanine ligase [Escherichia coli str. K-12 substr.
           DH10B]
 gi|188489826|gb|EDU64929.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|192926474|gb|EDV81107.1| D-alanine--D-alanine ligase B [Escherichia coli E22]
 gi|194412601|gb|EDX28898.1| D-alanine--D-alanine ligase B [Escherichia coli B171]
 gi|209910544|dbj|BAG75618.1| D-alanine-D-alanine ligase B [Escherichia coli SE11]
 gi|218430449|emb|CAR11315.1| D-alanine:D-alanine ligase [Escherichia coli UMN026]
 gi|238860726|gb|ACR62724.1| D-alanine:D-alanine ligase [Escherichia coli BW2952]
 gi|257762601|dbj|BAI34096.1| D-alanine:D-alanine ligase [Escherichia coli O111:H- str. 11128]
 gi|260450701|gb|ACX41123.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|284919872|emb|CBG32927.1| D-alanine--D-alanine ligase B [Escherichia coli 042]
 gi|291430079|gb|EFF03093.1| ddl [Escherichia coli FVEC1412]
 gi|291430686|gb|EFF03684.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291472434|gb|EFF14916.1| conserved hypothetical protein [Escherichia coli B354]
 gi|299878386|gb|EFI86597.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300317178|gb|EFJ66962.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300355641|gb|EFJ71511.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|300395671|gb|EFJ79209.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300402651|gb|EFJ86189.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300413287|gb|EFJ96597.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300420581|gb|EFK03892.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300450722|gb|EFK14342.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300525503|gb|EFK46572.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300531337|gb|EFK52399.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300840934|gb|EFK68694.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|300843874|gb|EFK71634.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|301075374|gb|EFK90180.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|306908436|gb|EFN38934.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|309700303|emb|CBI99591.1| D-alanine--D-alanine ligase B [Escherichia coli ETEC H10407]
 gi|310337684|gb|EFQ02795.1| D-alanine--D-alanine ligase B [Escherichia coli 1827-70]
 gi|315059315|gb|ADT73642.1| D-alanine:D-alanine ligase [Escherichia coli W]
 gi|315134786|dbj|BAJ41945.1| ddl [Escherichia coli DH1]
 gi|315616129|gb|EFU96748.1| D-alanine--D-alanine ligase B [Escherichia coli 3431]
 gi|320200389|gb|EFW74975.1| D-alanylalanine synthetase [Escherichia coli EC4100B]
 gi|323160110|gb|EFZ46071.1| D-alanine--D-alanine ligase B [Escherichia coli E128010]
 gi|323165975|gb|EFZ51755.1| D-alanine--D-alanine ligase B [Shigella sonnei 53G]
 gi|323171255|gb|EFZ56903.1| D-alanine--D-alanine ligase B [Escherichia coli LT-68]
 gi|323176400|gb|EFZ61992.1| D-alanine--D-alanine ligase B [Escherichia coli 1180]
 gi|323181789|gb|EFZ67202.1| D-alanine--D-alanine ligase B [Escherichia coli 1357]
 gi|323380127|gb|ADX52395.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|323939868|gb|EGB36068.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|324017747|gb|EGB86966.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|331040291|gb|EGI12498.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H736]
 gi|331061381|gb|EGI33344.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA143]
 gi|331066540|gb|EGI38417.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA271]
 gi|331072129|gb|EGI43465.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H591]
 gi|331081698|gb|EGI52859.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli H299]
 gi|332341424|gb|AEE54758.1| D-alanine--D-alanine ligase DdlB [Escherichia coli UMNK88]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|241664305|ref|YP_002982665.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12D]
 gi|240866332|gb|ACS63993.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12D]
          Length = 331

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 153/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+            V     Y Y+ KY + ++ +  PA I +D+   VQ L   A+
Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIAVDVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +   
Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|313200244|ref|YP_004038902.1| d-alanine/d-alanine ligase [Methylovorus sp. MP688]
 gi|312439560|gb|ADQ83666.1| D-alanine/D-alanine ligase [Methylovorus sp. MP688]
          Length = 320

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 153/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S EREVSL SG A  +AL   G + +  D  +R +  +LA    D  F  LH
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVEAAAFDPAERDLHELLA---FDRVFISLH 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117
           G FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+          +   
Sbjct: 83  GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+GI  +K+  ++      +      D L+I +   G   
Sbjct: 143 AAVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELA---AKSDPLVIAERFVGGGE 199

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +           VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +A
Sbjct: 200 YTVGILGDEALPIIRIVPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRA 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG RG  R DFL D    + ++LE+N  PGMT  S+ P  A   G SF EL++ ++E A
Sbjct: 260 IGGRGWGRVDFLMDEA-GRHYFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317


>gi|260842328|ref|YP_003220106.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
 gi|257757475|dbj|BAI28972.1| D-alanine:D-alanine ligase [Escherichia coli O103:H2 str. 12009]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAVLGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|323964812|gb|EGB60279.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327255070|gb|EGE66673.1| D-alanine--D-alanine ligase B [Escherichia coli STEC_7v]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|191167773|ref|ZP_03029580.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|193070839|ref|ZP_03051772.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|293476752|ref|ZP_06665160.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|309796082|ref|ZP_07690494.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|331650989|ref|ZP_08352017.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
 gi|190902199|gb|EDV61941.1| D-alanine--D-alanine ligase B [Escherichia coli B7A]
 gi|192955869|gb|EDV86339.1| D-alanine--D-alanine ligase B [Escherichia coli E110019]
 gi|254967073|gb|ACT97575.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_05]
 gi|254967084|gb|ACT97583.1| D-alanine-D-alanine ligase B [mixed culture bacterium
           CY_gF1DD01_10]
 gi|291321205|gb|EFE60647.1| D-alanine-D-alanine ligase B [Escherichia coli B088]
 gi|308120324|gb|EFO57586.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|323945721|gb|EGB41769.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323975744|gb|EGB70840.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
 gi|331051443|gb|EGI23492.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M718]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|281177312|dbj|BAI53642.1| D-alanine-D-alanine ligase B [Escherichia coli SE15]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +  S G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQSAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|309783023|ref|ZP_07677742.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
 gi|308918131|gb|EFP63809.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Ralstonia sp.
           5_7_47FAA]
          Length = 331

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHPFDPGLQPVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+            V     Y Y+ KY + ++ +  PA I  D+   VQ L   A+
Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIAADVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +   
Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|300112946|ref|YP_003759521.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
 gi|299538883|gb|ADJ27200.1| D-alanine/D-alanine ligase [Nitrosococcus watsonii C-113]
          Length = 316

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 156/302 (51%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G +   IDV + V   L+  +   AF VLHG
Sbjct: 13  VAVLMGGYSAEREISLKSGTAVLQALLRQGIEAHGIDVGKEVLTQLSKGEFTRAFIVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+     +P      +  +    
Sbjct: 73  RGGEDGVIQGALETLNLPYTGSGVLGSALTMDKLRSKQLWRGMDLPTADFSALTEDTDPA 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG++ ++   ++     +++       +  E+++ G E T
Sbjct: 133 VIAADLGLPLIVKPAREGSSLGMMKVESTDALQSAYREAAI--FDTAVFAERWLSGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  +  P+   Y +E KY +  + +  P  +       +Q LA  A Q +
Sbjct: 191 AAILADRVLPLIRLETPRVF-YDFEAKYHANTTHYFCPCGLSERQEHVLQALALEAFQVL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L ++E +  
Sbjct: 250 GASGWGRVDLRCDEKAH-PYLLEINTVPGMTDHSLVPMAAQAAGIGFDEMVLRILESSLE 308

Query: 299 LR 300
            R
Sbjct: 309 RR 310


>gi|215485258|ref|YP_002327689.1| D-alanine--D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312966220|ref|ZP_07780446.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|215263330|emb|CAS07645.1| D-alanine: D-alanine ligase [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312289463|gb|EFR17357.1| D-alanine--D-alanine ligase B [Escherichia coli 2362-75]
 gi|320197457|gb|EFW72071.1| D-alanine--D-alanine ligase B [Escherichia coli WV_060327]
          Length = 306

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENTLQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|157831486|pdb|1IOW|A Chain A, Complex Of Y216f D-Ala:d-Ala Ligase With Adp And A
           Phosphoryl Phosphinate
          Length = 306

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE K+ S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKFLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|218687969|ref|YP_002396181.1| D-alanine--D-alanine ligase [Escherichia coli ED1a]
 gi|306815310|ref|ZP_07449459.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|218425533|emb|CAR06316.1| D-alanine:D-alanine ligase [Escherichia coli ED1a]
 gi|222031923|emb|CAP74661.1| D-alanine--D-alanine ligase B [Escherichia coli LF82]
 gi|305850972|gb|EFM51427.1| D-alanine--D-alanine ligase [Escherichia coli NC101]
 gi|312944698|gb|ADR25525.1| D-alanine--D-alanine ligase [Escherichia coli O83:H1 str. NRG 857C]
 gi|315300007|gb|EFU59245.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|324008327|gb|EGB77546.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
          Length = 306

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|49083732|gb|AAT51128.1| PA4410 [synthetic construct]
          Length = 320

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 158/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG VQ +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSVQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|113460506|ref|YP_718570.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
 gi|123131919|sp|Q0I1D1|DDL_HAES1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|112822549|gb|ABI24638.1| D-alanine--D-alanine ligase [Haemophilus somnus 129PT]
          Length = 308

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 169/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV             
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +     +   +    +  + + +LIE+++ G
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  ++G+  L      VP+ +FY YE KY + N+ +  P+ +  +  +E+++L   A
Sbjct: 188 DELTVPILGNEVLPSI-KIVPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDGE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305

Query: 295 DA 296
            +
Sbjct: 306 LS 307


>gi|170718786|ref|YP_001783968.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
 gi|190359138|sp|B0US69|DDL_HAES2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168826915|gb|ACA32286.1| D-alanine--D-alanine ligase [Haemophilus somnus 2336]
          Length = 308

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 169/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + GF    ID       +L     D  FN+LHG
Sbjct: 10  IAVLLGGTSAEREVSLNSGNAVLTALRNQGFDAHPIDPKEYPVAMLKEQGFDRVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV             
Sbjct: 70  RGGEDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRTSFSQ 129

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +     +   +    +  + + +LIE+++ G
Sbjct: 130 LNPQVVVEKLGLPLMVKPSLEGSSVGLTKVNAIDDLKSAV--EFALQYDETVLIEEWLSG 187

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G+  L      VP+ +FY YE KY + N+ +  P+ +  +  +E+++L   A
Sbjct: 188 DELTVPVLGNEVLPSI-KIVPQGEFYDYEAKYIADNTQYFCPSGLTEEREQELRQLVKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D    K   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 247 YDVVGCRGWSRIDVMLDGE-GKFRLVEVNTNPGMTSHSLFPKSAATVGYSFEQLVVKILE 305

Query: 295 DA 296
            +
Sbjct: 306 LS 307


>gi|30061659|ref|NP_835830.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|30039901|gb|AAP15635.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 2457T]
          Length = 306

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  PGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|323935144|gb|EGB31511.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
          Length = 306

 Score =  194 bits (492), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV   + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAAWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332531951|ref|ZP_08407835.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332038578|gb|EGI75021.1| D-alanine--D-alanine ligase [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 306

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  +AL+++G      D        L  L  +  F  LHG
Sbjct: 11  VAVLLGGNSAEREVSLRSGQAVLNALQNSGIDAIAFDPQSRSLWELKELNVERVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+      
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKVRCKHLFKSAGLSTAPYTVVDAKKGFD 130

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I       ++KP   GSS+G+      Q +   L  ++++   +Q+L+EQ++ G E 
Sbjct: 131 AKAIMDEFKKVMVKPSHEGSSIGMAQASTTQELEDAL--ANAFKFDNQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E+  P    Y Y+ KY S  + +  PA +     K +Q ++  A   
Sbjct: 189 TITVLGDDVQPVIEMTTPNGF-YDYQAKYQSNTTQYHCPADLSEQDTKYLQAISLDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G +F +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQGN-FYLLEVNTVPGMTEKSLVPMAAKANGATFEQLVVRILEQ 304


>gi|237815828|ref|ZP_04594825.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297248708|ref|ZP_06932426.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
 gi|237789126|gb|EEP63337.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|297175877|gb|EFH35224.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 5 str. B3196]
          Length = 315

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 165/313 (52%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 13  VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 62

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 63  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 122

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 123 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 182

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 183 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 242

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 243 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 302

Query: 288 LLLWMVEDASCLR 300
           LL WM+EDASCLR
Sbjct: 303 LLSWMMEDASCLR 315


>gi|320179654|gb|EFW54603.1| D-alanine--D-alanine ligase B [Shigella boydii ATCC 9905]
          Length = 306

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|291280917|ref|YP_003497735.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|209746530|gb|ACI71572.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|290760790|gb|ADD54751.1| D-alanine--D-alanine ligase B [Escherichia coli O55:H7 str. CB9615]
 gi|320658217|gb|EFX25946.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320663526|gb|EFX30810.1| D-alanine--D-alanine ligase [Escherichia coli O55:H7 str. USDA
           5905]
          Length = 306

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|333010588|gb|EGK30021.1| D-alanine--D-alanine ligase B [Shigella flexneri VA-6]
          Length = 306

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLKASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|24111537|ref|NP_706047.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 301]
 gi|110804156|ref|YP_687676.1| D-alanine--D-alanine ligase [Shigella flexneri 5 str. 8401]
 gi|39931097|sp|Q83MF7|DDLB_SHIFL RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|24050296|gb|AAN41754.1| D-alanine-D-alanine ligase B [Shigella flexneri 2a str. 301]
 gi|110613704|gb|ABF02371.1| D-alanine-D-alanine ligase B [Shigella flexneri 5 str. 8401]
 gi|281599454|gb|ADA72438.1| D-alanine--D-alanine ligase B [Shigella flexneri 2002017]
 gi|313646525|gb|EFS10986.1| D-alanine--D-alanine ligase B [Shigella flexneri 2a str. 2457T]
 gi|332762094|gb|EGJ92363.1| D-alanine--D-alanine ligase B [Shigella flexneri 4343-70]
 gi|332762306|gb|EGJ92573.1| D-alanine--D-alanine ligase B [Shigella flexneri 2747-71]
 gi|332764938|gb|EGJ95166.1| D-alanine--D-alanine ligase B [Shigella flexneri K-671]
 gi|332768882|gb|EGJ99061.1| D-alanine--D-alanine ligase [Shigella flexneri 2930-71]
 gi|333009448|gb|EGK28904.1| D-alanine--D-alanine ligase B [Shigella flexneri K-218]
 gi|333011480|gb|EGK30894.1| D-alanine--D-alanine ligase B [Shigella flexneri K-272]
 gi|333021723|gb|EGK40972.1| D-alanine--D-alanine ligase B [Shigella flexneri K-227]
 gi|333022352|gb|EGK41590.1| D-alanine--D-alanine ligase B [Shigella flexneri K-304]
          Length = 306

 Score =  194 bits (492), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|283835154|ref|ZP_06354895.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
 gi|291069454|gb|EFE07563.1| D-alanine--D-alanine ligase B [Citrobacter youngae ATCC 29220]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D       +L  +     F  LHG
Sbjct: 5   IAVLSGGTSAEREVSLNSGAAVLAGLREGGVDAHLVDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LE + +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLEQIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +++  ++   L  + ++ H +++LIE++
Sbjct: 125 GLSDELVTKISALGLPLIVKPSREGSSVGMSKVEEQNALQGAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +  +   ++Q L 
Sbjct: 183 LSGPEFTVALLGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEAEQEAQLQELV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|225023730|ref|ZP_03712922.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
 gi|224943612|gb|EEG24821.1| hypothetical protein EIKCOROL_00594 [Eikenella corrodens ATCC
           23834]
          Length = 320

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 111/299 (37%), Positives = 166/299 (55%), Gaps = 4/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL SG A  +AL+  G    + D      L L      +AFNVLHG
Sbjct: 22  VAVLNGGFSSEREVSLDSGAAVLAALQSRGIDAHRFDPKEQDILQLKAQGFQVAFNVLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L+ + IPYT  G+ ASAL MDK R K +  + G+PV    +++  T  +
Sbjct: 82  TYGEDGTVQALLDSIGIPYTGCGMAASALGMDKYRCKLIWQALGLPVPDFAVLHDDTDFA 141

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +P    +    +   +++ E++VDG E T
Sbjct: 142 AVEAELGLPMFVKPAAEGSSVGVVKVKQPGELPKVYRELRERHLHGEIIAERFVDGGEYT 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G  +L      +P ++FY Y+ KY   ++ +  P+ +      E++RLA    +AI
Sbjct: 202 CAVLGQQALPSI-RIIPATEFYDYDAKYFRDDTVYQCPSDLDAAGEAEIRRLAKAGFEAI 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G RG  R DF     S K++ LEIN  PGMT  S+ P+ AA  G  F +L + ++  A+
Sbjct: 261 GGRGWGRVDF-LRSQSGKLYLLEINTVPGMTSHSLVPKAAAQTGLDFADLCVEVLSHAT 318


>gi|300715310|ref|YP_003740113.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
 gi|299061146|emb|CAX58253.1| D-alanine-D-alanine ligase [Erwinia billingiae Eb661]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L +AG     +D+     + L     D AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLMSGNAVLAGLIEAGVDAHAVDIRDFPVMRLKEEGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q +LE L IPYT SG++ASA++MDK+R+K +   CG+PV P + + R  MD 
Sbjct: 65  RGGEDGTLQGVLEFLSIPYTGSGVMASAITMDKLRTKFLWQGCGLPVSPYVALTRKEMDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  +    ++   L    ++ H D +L+E +
Sbjct: 125 GLTPETEAKIAALGLPVFVKPSCEGSSVGISRVNSADTLQAAL--VEAFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+GD  L         S+FY YE KY S ++ +  P+ +  +   E+  + 
Sbjct: 183 LSGPEYTVAVIGDEILPSI-RIKVVSEFYDYEAKYFSDDTEYFCPSGLSAEQEAELSDIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D +      + + LE+N  PGMT  S+ P     AG SF +L+  
Sbjct: 242 IKAWRALGCSGWGRVDVMM-GGDGQFYLLEVNTSPGMTGHSLVPMAGKQAGLSFSQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|62290321|ref|YP_222114.1| D-alanine--D-alanine ligase [Brucella abortus bv. 1 str. 9-941]
 gi|82700245|ref|YP_414819.1| D-alanine--D-alanine ligase [Brucella melitensis biovar Abortus
           2308]
 gi|189024554|ref|YP_001935322.1| D-alanine--D-alanine ligase [Brucella abortus S19]
 gi|254689622|ref|ZP_05152876.1| D-alanine--D-alanine ligase [Brucella abortus bv. 6 str. 870]
 gi|254694112|ref|ZP_05155940.1| D-alanine--D-alanine ligase [Brucella abortus bv. 3 str. Tulya]
 gi|254697764|ref|ZP_05159592.1| D-alanine--D-alanine ligase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730653|ref|ZP_05189231.1| D-alanine--D-alanine ligase [Brucella abortus bv. 4 str. 292]
 gi|256257872|ref|ZP_05463408.1| D-alanine--D-alanine ligase [Brucella abortus bv. 9 str. C68]
 gi|260546863|ref|ZP_05822602.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755150|ref|ZP_05867498.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260758369|ref|ZP_05870717.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260762195|ref|ZP_05874538.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884163|ref|ZP_05895777.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|261214412|ref|ZP_05928693.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
 gi|62196453|gb|AAX74753.1| DdlB, D-alanine--D-alanine ligase B [Brucella abortus bv. 1 str.
           9-941]
 gi|82616346|emb|CAJ11403.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189020126|gb|ACD72848.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095913|gb|EEW79790.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668687|gb|EEX55627.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 4 str. 292]
 gi|260672627|gb|EEX59448.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675258|gb|EEX62079.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 6 str. 870]
 gi|260873691|gb|EEX80760.1| D-alanine-D-alanine ligase B [Brucella abortus bv. 9 str. C68]
 gi|260916019|gb|EEX82880.1| D-Ala-D-Ala ligase B [Brucella abortus bv. 3 str. Tulya]
          Length = 308

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 165/313 (52%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIMPVGYQFYDYDSKYVAGASTHVCPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINTQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WM+EDASCLR
Sbjct: 296 LLSWMMEDASCLR 308


>gi|322421359|ref|YP_004200582.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
 gi|320127746|gb|ADW15306.1| D-alanine/D-alanine ligase [Geobacter sp. M18]
          Length = 305

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 116/297 (39%), Positives = 189/297 (63%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   G++   IDV R +   LA  + + AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGYQAVGIDVGRDLPQRLAEEQVERAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ +K + ++ G+ + P  +++R   + 
Sbjct: 71  RFGEDGSVQGLLELMAIPYTGSGVLASALAIDKIAAKTMFAAAGLKLAPYQVLSRG-EEL 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ ++++ Q +   L  + ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVSIVREPQQMEKAL--AEAFRYDSEILIEAFIDGKEVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   ++      VPK++FY YE KY+   + H+LPA++P  +Y+ V +    AH A+GC
Sbjct: 188 ILDGRAMGAI-EIVPKNEFYDYEAKYTDGGAEHILPARLPEQVYQAVLKEGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL +    + + LE+N  PGMT +S+ PE+A  +G  F +L+  ++  AS
Sbjct: 247 DCYSRVDFLVNEA-GECYLLEVNTLPGMTDLSLLPEIARGSGIDFDQLVQRILLAAS 302


>gi|317046899|ref|YP_004114547.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316948516|gb|ADU67991.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L + G     +D      L L     D AF  LHG
Sbjct: 5   VAVLLGGTSAERDVSLMSGNAVLAGLREMGIDAHPVDTRDVSVLNLKQQGFDKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE  +IPYT SG++ASA++MDK+RSK +    G+P    + + R   ++
Sbjct: 65  RGGEDGTLQAVLEFQQIPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQQEN 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  +    ++P  L  + ++ H D +L+E +
Sbjct: 125 GLDAQTLAEIDALGLPVFVKPSCEGSSVGISRVNTRDALPAAL--AEAFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L         S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGILGDQILPSI-KIQSASEFYDYEAKYISDDTQYFCPSGLSAEREAELQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDGEDN-FQLLEVNTSPGMTSHSLVPMAAKQAGLSFPQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|110640305|ref|YP_668033.1| D-alanine--D-alanine ligase [Escherichia coli 536]
 gi|191174586|ref|ZP_03036080.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300984514|ref|ZP_07177006.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|110341897|gb|ABG68134.1| D-alanine-D-alanine ligase B [Escherichia coli 536]
 gi|190905133|gb|EDV64778.1| D-alanine--D-alanine ligase B [Escherichia coli F11]
 gi|300306683|gb|EFJ61203.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|324012255|gb|EGB81474.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|331661138|ref|ZP_08362070.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
 gi|331052180|gb|EGI24219.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli TA206]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSQGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|170768438|ref|ZP_02902891.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
 gi|170122542|gb|EDS91473.1| D-alanine--D-alanine ligase B [Escherichia albertii TW07627]
          Length = 306

 Score =  193 bits (491), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEIDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDEQIADISALGLPLIVKPSREGSSVGMSKVVAENTLQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  P+ +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPSGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWMTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|91209156|ref|YP_539142.1| D-alanine--D-alanine ligase [Escherichia coli UTI89]
 gi|117622378|ref|YP_851291.1| D-alanine--D-alanine ligase [Escherichia coli APEC O1]
 gi|218557032|ref|YP_002389945.1| D-alanine--D-alanine ligase [Escherichia coli S88]
 gi|237704241|ref|ZP_04534722.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|91070730|gb|ABE05611.1| D-alanine--D-alanine ligase B [Escherichia coli UTI89]
 gi|115511502|gb|ABI99576.1| D-alanine--D-alanine ligase B [Escherichia coli APEC O1]
 gi|218363801|emb|CAR01461.1| D-alanine:D-alanine ligase [Escherichia coli S88]
 gi|226902153|gb|EEH88412.1| D-alanine-D-alanine ligase B [Escherichia sp. 3_2_53FAA]
 gi|294490795|gb|ADE89551.1| D-alanine--D-alanine ligase B [Escherichia coli IHE3034]
 gi|307629666|gb|ADN73970.1| D-alanine--D-alanine ligase [Escherichia coli UM146]
 gi|315285162|gb|EFU44607.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|323950912|gb|EGB46789.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323955290|gb|EGB51063.1| D-alanine-D-alanine ligase [Escherichia coli H263]
          Length = 306

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTIAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|170683837|ref|YP_001742214.1| D-alanine--D-alanine ligase [Escherichia coli SMS-3-5]
 gi|170521555|gb|ACB19733.1| D-alanine--D-alanine ligase B [Escherichia coli SMS-3-5]
          Length = 306

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDQQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|26246025|ref|NP_752064.1| D-alanine--D-alanine ligase [Escherichia coli CFT073]
 gi|227885003|ref|ZP_04002808.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300981129|ref|ZP_07175375.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|301048484|ref|ZP_07195509.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|29336713|sp|Q8FL63|DDLB_ECOL6 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|26106422|gb|AAN78608.1|AE016755_108 D-alanine--D-alanine ligase B [Escherichia coli CFT073]
 gi|227837832|gb|EEJ48298.1| D-alanine--D-alanine ligase [Escherichia coli 83972]
 gi|300299670|gb|EFJ56055.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300409031|gb|EFJ92569.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|307551936|gb|ADN44711.1| D-alanine--D-alanine ligase B [Escherichia coli ABU 83972]
 gi|315294713|gb|EFU54056.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
          Length = 306

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEALQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|322834418|ref|YP_004214445.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321169619|gb|ADW75318.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 306

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG A  + L ++G     ID       +L        F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLQSGAAVLAGLRESGVDAHGIDTKTFNVALLKEEGYSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT SG++ASAL+MDK R+K V  + G+PV P + ++R  ++ 
Sbjct: 65  RGGEDGTLQGLLEQIGLPYTGSGVMASALTMDKFRTKLVWQALGLPVTPFVALHRAQIEE 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  ++ +   L     + H D +LIE++
Sbjct: 125 AGQGALAAKIAELGLPVIVKPSREGSSVGMSKVTTEKELLPAL--QEGFRHDDNVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G   +       P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 183 LSGPEYTVAIVGSQVMPSI-RIQPAGTFYDYQAKYLSDETQYFCPSGLSEAQEQQLTALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+ C G  R D + D        LE+N  PGMT  S+ P  A +AG SF +L+  
Sbjct: 242 LQAYQALDCSGWGRVDVMQDG-DGNFNLLEVNTSPGMTSHSLVPMAAKHAGLSFPQLVFR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|253998175|ref|YP_003050238.1| D-alanine--D-alanine ligase [Methylovorus sp. SIP3-4]
 gi|253984854|gb|ACT49711.1| D-alanine/D-alanine ligase [Methylovorus sp. SIP3-4]
          Length = 320

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 154/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVLMGG S EREVSL SG A  +AL   G + +  D  +R +  +LA    D  F  LH
Sbjct: 26  VAVLMGGRSGEREVSLKSGGAVLAALLRQGVQAAAFDPAERDLHELLA---FDRVFISLH 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFT 117
           G FGEDG VQ  LEL+ IPYT SG+LAS++ MDK R+K +  S G+          +   
Sbjct: 83  GRFGEDGTVQGALELMGIPYTGSGVLASSVGMDKWRTKLLWRSAGIATPDFELLDASSDF 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+GI  +K+  ++      +      D L+I +   G   
Sbjct: 143 AAVEQRLGLPMFVKPANEGSSIGISKVKQSGALKAAYELA---AKSDPLVIAERFVGGGE 199

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +           VP ++FY +E KY   ++ ++ P  +P +    ++  A  A +A
Sbjct: 200 YTVGILGDEALPIIRIVPANEFYDFEAKYLRDDTQYLCPCGLPAEQEARIRAEALQAFRA 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG RG  R DFL D  S + ++LE+N  PGMT  S+ P  A   G SF EL++ ++E A
Sbjct: 260 IGGRGWGRVDFLMDE-SGRHYFLEVNTSPGMTDHSLVPMAAKANGISFDELVIRILELA 317


>gi|326564128|gb|EGE14366.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 46P47B1]
          Length = 307

 Score =  193 bits (490), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGTSAEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +  S
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+ ++++   +    +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L      +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|226941966|ref|YP_002797040.1| D-alanine--D-alanine ligase [Laribacter hongkongensis HLHK9]
 gi|259645169|sp|C1D5L4|DDL_LARHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226716893|gb|ACO76031.1| DdlB [Laribacter hongkongensis HLHK9]
          Length = 308

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 142/298 (47%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ERE+SL SG+   +AL   G      D        L     D  F  LHG
Sbjct: 12  VAVMMGGNSCEREISLMSGQGVLNALRGQGVDAHAFDPAEKPLAALQSEGFDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            FGEDG +Q  LE + IPYT  G++ASA+ MDK RSK V  + G+PV        +    
Sbjct: 72  AFGEDGTLQGALETMGIPYTGCGVMASAIGMDKWRSKLVWKAAGLPVPDFRLLADDSDFA 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSSLG+  ++K   +     ++  +   D L++ +   G    
Sbjct: 132 AIEAELGLPMFVKPACEGSSLGVTKVRKAGELAQAYAEARKF---DPLVLAEQFVGGGEY 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + +          P ++FY Y+ KY   ++ +  PA +  +    ++RLA      +
Sbjct: 189 TVALLEGRALPAIKIEPATEFYDYDAKYFRDDTVYRCPAGMDDEHELAMRRLAEQGFAVL 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DFL D    + + LEIN  PGMT  S+ P  A  AG ++  L L ++E A
Sbjct: 249 GGSGWGRIDFLVDEA-GQPYLLEINTAPGMTTHSLVPMAAREAGLTYEALCLKVLEAA 305


>gi|312135724|ref|YP_004003062.1| d-alanine/d-alanine ligase [Caldicellulosiruptor owensensis OL]
 gi|311775775|gb|ADQ05262.1| D-alanine/D-alanine ligase [Caldicellulosiruptor owensensis OL]
          Length = 364

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 162/343 (47%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+SL S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISLVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL +IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVIFPVLHGLNGEDGTVQGLLELSDIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAVRIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  ++G S+ +L+  ++  A
Sbjct: 306 TNKVYFNEVNTIPGFTNISMYPKLMEFSGISYSQLIDKLISLA 348


>gi|187930155|ref|YP_001900642.1| D-alanine--D-alanine ligase [Ralstonia pickettii 12J]
 gi|229485977|sp|B2UCX5|DDL_RALPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187727045|gb|ACD28210.1| D-alanine/D-alanine ligase [Ralstonia pickettii 12J]
          Length = 331

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 153/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG    +AL   G      D        LA    D     LHG
Sbjct: 20  VGVLMGGRSAEREISLMSGNGVLAALRARGVDAHAFDPGLQAVADLAKQGFDRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K+   + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRQWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+            V     Y Y+ KY + ++ +  PA IP D+   VQ L   A+
Sbjct: 198 CPIIGEGESATALPLIRIVAPQANYDYQNKYFTDDTRYECPAPIPADVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG  R+D +        F LE+N  PGMT  S+ P  A  AG S+ + +L +   
Sbjct: 258 RGLGCRGWGRADIMLRKSDNAPFLLEMNTSPGMTGHSLVPMGARAAGISYEDFVLQLAAS 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|15799776|ref|NP_285788.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 EDL933]
 gi|15829350|ref|NP_308123.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. Sakai]
 gi|168751398|ref|ZP_02776420.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|168755700|ref|ZP_02780707.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|168764029|ref|ZP_02789036.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|168771316|ref|ZP_02796323.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776936|ref|ZP_02801943.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|168781977|ref|ZP_02806984.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|168789619|ref|ZP_02814626.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|168801519|ref|ZP_02826526.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|195939308|ref|ZP_03084690.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC4024]
 gi|208806008|ref|ZP_03248345.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813450|ref|ZP_03254779.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208821506|ref|ZP_03261826.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399854|ref|YP_002268700.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|217325585|ref|ZP_03441669.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254791229|ref|YP_003076066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|261226849|ref|ZP_05941130.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK2000]
 gi|261255253|ref|ZP_05947786.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. FRIK966]
 gi|22095573|sp|Q8X9Y6|DDLB_ECO57 RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|12512798|gb|AAG54396.1|AE005186_2 D-alanine-D-alanine ligase B, affects cell division [Escherichia
           coli O157:H7 str. EDL933]
 gi|13359552|dbj|BAB33519.1| D-alanine-D-alanine ligase B [Escherichia coli O157:H7 str. Sakai]
 gi|187767759|gb|EDU31603.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4196]
 gi|188014545|gb|EDU52667.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4113]
 gi|189000480|gb|EDU69466.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4076]
 gi|189356982|gb|EDU75401.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4401]
 gi|189359901|gb|EDU78320.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4486]
 gi|189365902|gb|EDU84318.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4501]
 gi|189370780|gb|EDU89196.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC869]
 gi|189376378|gb|EDU94794.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. EC508]
 gi|208725809|gb|EDZ75410.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734727|gb|EDZ83414.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4045]
 gi|208741629|gb|EDZ89311.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161254|gb|ACI38687.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC4115]
 gi|209746524|gb|ACI71569.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746526|gb|ACI71570.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746528|gb|ACI71571.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|209746532|gb|ACI71573.1| D-alanine-D-alanine ligase B [Escherichia coli]
 gi|217321806|gb|EEC30230.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           TW14588]
 gi|254590629|gb|ACT69990.1| D-alanine:D-alanine ligase [Escherichia coli O157:H7 str. TW14359]
 gi|320190385|gb|EFW65035.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str.
           EC1212]
 gi|320642131|gb|EFX11482.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. G5101]
 gi|320647494|gb|EFX16289.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. 493-89]
 gi|320652828|gb|EFX21066.1| D-alanine--D-alanine ligase [Escherichia coli O157:H- str. H 2687]
 gi|320668838|gb|EFX35633.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. LSU-61]
 gi|326345188|gb|EGD68931.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1125]
 gi|326346958|gb|EGD70692.1| D-alanine--D-alanine ligase B [Escherichia coli O157:H7 str. 1044]
          Length = 306

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRVEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSV-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332527085|ref|ZP_08403165.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
 gi|332111516|gb|EGJ11498.1| D-alanine--D-alanine ligase [Rubrivivax benzoatilyticus JA2]
          Length = 316

 Score =  193 bits (490), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 107/308 (34%), Positives = 158/308 (51%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG     AL  AG      D        L H   + AF  LHG
Sbjct: 7   VAVLMGGSSAERQVSLMSGNGVLEALRRAGVDAHPFDPAERELAELKHAGFERAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++ ++ G+P      +       
Sbjct: 67  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKVMTKRIWAAEGLPTPRWAWLAPERQAR 126

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +H       +  P ++KP + GSS+GI  +     +   +    +  +   +L E+++DG
Sbjct: 127 EHVVAVPDQLGLPLIVKPPREGSSIGITKVAGYSEMQDAV--KLASEYDADVLCEEFIDG 184

Query: 175 IELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC V      A        V     Y +E KY S  + +  P+ +P     E+QRL 
Sbjct: 185 EEVTCAVLGDGASARALPVIRIVAPGGNYDFEHKYFSEETGYHCPSGLPPAEEAEIQRLT 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG S+ +L + 
Sbjct: 245 LAAYRLLGCRGWGRADLMIRASDRKPFLLEMNTSPGMTSHSLVPLAARVAGLSYEQLCVH 304

Query: 292 MVEDASCL 299
           ++E A+  
Sbjct: 305 VLECAALD 312


>gi|157147484|ref|YP_001454803.1| D-alanine--D-alanine ligase [Citrobacter koseri ATCC BAA-895]
 gi|157084689|gb|ABV14367.1| hypothetical protein CKO_03283 [Citrobacter koseri ATCC BAA-895]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     ID       +L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGVDAHPIDPKEVDVTLLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +L+L+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLDLIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+   K  +   L    + ++ H +++LIE++
Sbjct: 125 GLSDDALTRISALGLPLIVKPSREGSSVGM--SKVVEENALQAALALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +  +    +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEEEQEAILQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTALGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|301169880|emb|CBW29484.1| D-alanine:D-alanine ligase [Haemophilus influenzae 10810]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 170/302 (56%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RRGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LNPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|197247549|ref|YP_002145116.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197211252|gb|ACH48649.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAYPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|168464318|ref|ZP_02698221.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|194444863|ref|YP_002039362.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|207855644|ref|YP_002242295.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|194403526|gb|ACF63748.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|195632730|gb|EDX51184.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|206707447|emb|CAR31720.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|82703606|ref|YP_413172.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
 gi|123543907|sp|Q2Y641|DDL_NITMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82411671|gb|ABB75780.1| D-alanine--D-alanine ligase [Nitrosospira multiformis ATCC 25196]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 155/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SGKA   AL  +G      D        L       A   LHG
Sbjct: 10  VAVLLGGRSAEREISLESGKAVLDALRSSGVDAHPFDPSEQHMDALLQQGYTRAHIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            +GEDG VQ  LELL IPYT SG+LASAL+MDK R+K +  S G+     I         
Sbjct: 70  RYGEDGTVQGALELLGIPYTGSGVLASALAMDKWRTKLLWQSAGINTPRHILLDEQSDFD 129

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GS++G+  +++   +        +  H   +L EQ+++G ELT
Sbjct: 130 AVAKELGLPLIVKPSREGSTIGLSKVREAGEVAAA--WHLAARHDAMVLAEQFIEGTELT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L +      + D Y Y+ KY S  + +  P+ +  +    +++ A  AH+ +
Sbjct: 188 ASILGDVALPLV-RIQVEGDLYDYQAKYLSDKTQYFCPSGVSEEQECLIRKQALQAHRLL 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G  R D + D  S   ++LE N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 247 GCEGWGRVDLILD-KSGTPYFLEANTSPGMTTHSLVPMAAKAAGISFEELVLKILGLA 303


>gi|16759125|ref|NP_454742.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|29140675|ref|NP_804017.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56412402|ref|YP_149477.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|167550675|ref|ZP_02344432.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|168230409|ref|ZP_02655467.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168243455|ref|ZP_02668387.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|168262185|ref|ZP_02684158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|194451328|ref|YP_002044100.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194471648|ref|ZP_03077632.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197361338|ref|YP_002140973.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|213052846|ref|ZP_03345724.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213426153|ref|ZP_03358903.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213585685|ref|ZP_03367511.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213621330|ref|ZP_03374113.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213646585|ref|ZP_03376638.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|213855584|ref|ZP_03383824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|238911187|ref|ZP_04655024.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
 gi|289823732|ref|ZP_06543344.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|22095576|sp|Q8Z9G7|DDLB_SALTI RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|81359629|sp|Q5PDC6|DDL_SALPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486018|sp|B5BLC4|DDL_SALPK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25293550|pir||AG0518 D-alanine,D-alanine ligase B [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16501415|emb|CAD01287.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29136299|gb|AAO67866.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|56126659|gb|AAV76165.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. ATCC 9150]
 gi|194409632|gb|ACF69851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194458012|gb|EDX46851.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|197092813|emb|CAR58239.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Paratyphi A str. AKU_12601]
 gi|205324448|gb|EDZ12287.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205335047|gb|EDZ21811.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205337394|gb|EDZ24158.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|205348781|gb|EDZ35412.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|283783879|ref|YP_003363744.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
 gi|282947333|emb|CBG86878.1| D-alanine--D-alanine ligase B [Citrobacter rodentium ICC168]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 102/305 (33%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLFGGTSAEREVSLNSGAAVLAGLREGGVDAHPVDPKEVDVTQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL+ +PYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELIGLPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFEK 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + +  ++   L  + ++ H +++LIE++
Sbjct: 125 GLSEELVTQISALGLPLIVKPSREGSSVGMSKVAEYDALQSAL--ALAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       ++ L 
Sbjct: 183 LSGPEFTVAILGEEILPTI-RIQPAGTFYDYEAKYLSDETQYFCPAGLETAQEALLRDLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A   G SF +L++ 
Sbjct: 242 RKAWSTLGCKGWGRIDAMLD-SDGQFYLLEANTSPGMTSHSLVPMAAREKGLSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|323190226|gb|EFZ75502.1| D-alanine--D-alanine ligase B [Escherichia coli RN587/1]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L           FY YE KY S  + +  P  +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQSAGTFYDYEAKYLSDETQYFCPVGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|319897393|ref|YP_004135590.1| d-alanine:d-alanine ligase [Haemophilus influenzae F3031]
 gi|317432899|emb|CBY81265.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3031]
          Length = 306

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT   ++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCDVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY Y+ KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYKAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|332974211|gb|EGK11144.1| D-alanine-D-alanine ligase B [Kingella kingae ATCC 23330]
          Length = 307

 Score =  193 bits (489), Expect = 3e-47,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG+A   AL   G      D  ++    L     D+AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLISGQAIVDALRSKGVDAHPFDPAQTELAKLKKQGFDIAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
            +GEDG VQ  LE L +PYT  G+LASAL MDK R K + S+ G+P+ P ++++  +   
Sbjct: 67  TYGEDGTVQGALEALGVPYTGCGVLASALGMDKYRCKLIWSALGLPIPPFVVLHDNSHFA 126

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  IKP   GSS+G++ +K+   +  +  +         +L EQ++ G E T
Sbjct: 127 EVEQQLGLPLFIKPAAEGSSVGVVKVKQAGDLATEYAKLRDMGLHGVILAEQFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV    +L      +P+++FY YE KY   ++ ++ P+ +  D    +Q LA  A +AI
Sbjct: 187 CGVFNRQALPTI-RIIPQTEFYDYEAKYLRDDTVYLCPSDLNADDEARMQHLAQQAFEAI 245

Query: 239 -GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G   + R DFL D +   ++ LE N  PGMT  S+ P+ A   G  F +L + ++ +A
Sbjct: 246 GGGNSLGRIDFLKDSV-GCLYILEANTLPGMTSHSLIPKSAKQIGIDFADLCIAILNNA 303


>gi|204927234|ref|ZP_03218436.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|204323899|gb|EDZ09094.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
          Length = 306

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++L+E++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|152996625|ref|YP_001341460.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
 gi|190359163|sp|A6VYJ6|DDL_MARMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150837549|gb|ABR71525.1| D-alanine--D-alanine ligase [Marinomonas sp. MWYL1]
          Length = 317

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AV+ GG S+EREVSL SG   A  L   G++V ++D+          + L  ++ DLAF
Sbjct: 10  IAVIYGGRSAEREVSLQSGPLVAEGLRAKGYQVVELDLYGSNAALDPIVQLQSIEFDLAF 69

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113
             LHG  GEDG VQA+LE+   PYT S  LA  L+MDK+ +K+  +  G+P       + 
Sbjct: 70  IALHGGEGEDGRVQALLEMFGKPYTGSSPLACGLAMDKVLTKRFWNGIGIPTPAYLSFVD 129

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +      +  +S P ++KP + GS++GI        +   L+++    +   +L+E+++D
Sbjct: 130 HANADLIEEQMSYPVIVKPSREGSTIGINKAMNRAELDDALIKAL--EYDSDILVEEFID 187

Query: 174 GIELTCGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E T  V+ D +         P    Y YE KY + ++ ++LP  +  D   E+Q LA 
Sbjct: 188 GPEFTVTVIDDVAYPPIGLKPAPDHKLYDYEAKYIADDTEYLLPCGLDEDDENELQMLAL 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++++GC G  R D + D      + LE+N  PGMT  S+ P  A Y G  +  L+  +
Sbjct: 248 DAYRSLGCFGWGRVDVMRDQA-GVFWVLEVNTAPGMTSHSLVPMAAKYVGIDYASLVEKI 306

Query: 293 VEDA 296
            ++A
Sbjct: 307 AQNA 310


>gi|326795768|ref|YP_004313588.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
 gi|326546532|gb|ADZ91752.1| D-alanine--D-alanine ligase [Marinomonas mediterranea MMB-1]
          Length = 315

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 160/304 (52%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AVL GG  +EREVSL SG    +AL+  G+    ID+     DR+    L     D+AF
Sbjct: 8   IAVLYGGRCAEREVSLESGGLILNALKQKGYDAFGIDLYGARHDRNPIDQLRAEPFDIAF 67

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             LHG  GEDG +QA+L+L+  PYT S  LA AL+MDK+ +K++    G+P    I    
Sbjct: 68  IGLHGGEGEDGHIQALLDLMSKPYTGSRQLACALAMDKLMTKKLWKGLGIPTPDYIADAS 127

Query: 116 FT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +  +S P ++KP + GS++GI      + +   L  +    +  ++L+E++++
Sbjct: 128 DVSVECVERQLSYPVIVKPSREGSTIGISKADNTEQLMQALRDAR--EYDSEILVEEFIE 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E T  ++ D +     +   +    Y YE KY + ++ + LP+ +  D    ++ L+ 
Sbjct: 186 GPEFTVSIINDEAYPAIGLKPSEDHQLYDYEAKYLADDTEYRLPSGLSDDDESRLKALSL 245

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+ A+GC+G  R D +    +     LE+N  PGMT  S+ P  AA+ G S+++L+  +
Sbjct: 246 DAYLAVGCKGWGRVDVM-RRNNGDFSVLEVNTSPGMTSHSLVPMAAAHVGISYQDLVEKI 304

Query: 293 VEDA 296
           +  A
Sbjct: 305 LCSA 308


>gi|254037507|ref|ZP_04871584.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
 gi|226840613|gb|EEH72615.1| ddl cell wall enzyme [Escherichia sp. 1_1_43]
          Length = 306

 Score =  193 bits (489), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGLQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|116052444|ref|YP_792756.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115587665|gb|ABJ13680.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 319

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 157/302 (51%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAAGVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 DAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKERELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P     AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAVRAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|161619376|ref|YP_001593263.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260566067|ref|ZP_05836537.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
 gi|161336187|gb|ABX62492.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155585|gb|EEW90665.1| D-alanine-D-alanine ligase B [Brucella suis bv. 4 str. 40]
          Length = 308

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 166/313 (53%), Positives = 220/313 (70%), Gaps = 23/313 (7%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA+ LE+ G++V++IDVDR+V  +L  LK
Sbjct: 6   VAVLMGGFSSERSVSLSS----------GVACATTLEECGYRVTRIDVDRNVASILVELK 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q +LE L+IPYTHSG+LASAL+MDK R+K+V ++ GV V PS
Sbjct: 56  PDVVFNALHGPFGEDGAIQGVLEYLQIPYTHSGVLASALAMDKDRAKKVAAAAGVVVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L+NRF + SQH + PPYV+KP++ GSS G++++K+DQ  P  ++ S+ W +GD++++E 
Sbjct: 116 RLMNRFDIGSQHPMKPPYVVKPVREGSSFGVVIVKEDQPHPPQVIGSADWKYGDEVMVEG 175

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G ELTC VMGD ++DV EI      FY Y+ KY +  STHV PAKI  +IY+++Q +
Sbjct: 176 YIAGRELTCAVMGDRAMDVCEIIPVGYQFYDYDSKYVAGASTHVSPAKILPNIYQKIQTM 235

Query: 231 AFLAHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           A  AH+AIGCRG+SRSDF FD       +V WLEIN QPGMTP S+ P++A  AG SF E
Sbjct: 236 ALTAHRAIGCRGVSRSDFRFDDRFSEEGEVVWLEINAQPGMTPTSLVPDIAKAAGISFAE 295

Query: 288 LLLWMVEDASCLR 300
           LL WMVEDASCLR
Sbjct: 296 LLSWMVEDASCLR 308


>gi|171462989|ref|YP_001797102.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
 gi|229485972|sp|B1XT11|DDL_POLNS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171192527|gb|ACB43488.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           necessarius STIR1]
          Length = 337

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        L   K D  F  LHG
Sbjct: 30  VGVLLGGKSGEREISLMSGNGVLEALRSKGVDAHAFDAGLRCPTELVKEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELL +PYT S +LASAL++DK+ +KQV  S G+       +   +  +
Sbjct: 90  RFGEDGTIQGLLELLGLPYTGSAVLASALAIDKIVTKQVWISNGLATPEYEELTATSDWN 149

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSSLG+  +K  + +P     ++      +++ E  + G ELT
Sbjct: 150 AVVQHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYKLAAGL--DKKVIAETCIIGDELT 207

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G             +P    Y +  KY S  + ++ P  +  ++   VQ LA  A+
Sbjct: 208 CPLVGQGKTAEALPVIKIIPPQANYDFHNKYFSDETQYLCPTGLAPEVNAAVQTLALAAY 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +A+GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW++
Sbjct: 268 KALGCRTWGRADVMLDQKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGIEYADLVLWLL 325


>gi|319776619|ref|YP_004139107.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
 gi|317451210|emb|CBY87443.1| D-alanine:D-alanine ligase [Haemophilus influenzae F3047]
          Length = 306

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 112/302 (37%), Positives = 169/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|329124132|ref|ZP_08252679.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
 gi|327467557|gb|EGF13055.1| D-alanine-D-alanine ligase B [Haemophilus aegyptius ATCC 11116]
          Length = 306

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GGIS+EREVSL+SG A   AL + G+    ID        L        FN+LHG
Sbjct: 8   IAVLLGGISAEREVSLNSGNAVLEALLNQGYDAHPIDPKEYNVANLKKDGFHRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++DG
Sbjct: 128 LDPQSVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLDG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|297617349|ref|YP_003702508.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
 gi|297145186|gb|ADI01943.1| D-alanine/D-alanine ligase [Syntrophothermus lipocalidus DSM 12680]
          Length = 314

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 113/306 (36%), Positives = 175/306 (57%), Gaps = 15/306 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG S EREVSL SG+A A AL   GF+VS +D++ +    +   +PD+AF  LHG +
Sbjct: 7   VLYGGKSKEREVSLRSGRAVADALSQKGFEVSVLDLNENSVASIVADRPDVAFIALHGKY 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG VQ +L++LEIPY  S +L SA+ ++K  +K++++   +P  P +++N        
Sbjct: 67  GEDGTVQGLLDILEIPYVGSDVLTSAVCINKATTKKILAYEQLPTAPFVILNTERGPKIG 126

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP   GSS+G  ++KK++++   L   ++  +  +L++E+++
Sbjct: 127 LAEMADKVVKELGLPAVVKPATQGSSIGTTIVKKEEALIPAL--ETALGYDGELVVERFI 184

Query: 173 DGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           DG E+T       DA +      V +++FY YE KY+   S H++PA+I       V+ +
Sbjct: 185 DGTEVTASVLGNEDAEVLPLIEIVAENEFYDYEAKYTPGMSHHIIPARISERARVRVEEI 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   + A  CRG SR DF+ D      F LEIN  PGMT +S+FP+ A  AG SF +L  
Sbjct: 245 ALKTYHAFKCRGFSRVDFIVDKNDN-PFVLEINTIPGMTSLSLFPDAARAAGMSFEDLCA 303

Query: 291 WMVEDA 296
            +VE A
Sbjct: 304 RLVELA 309


>gi|302872435|ref|YP_003841071.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
 gi|302575294|gb|ADL43085.1| D-alanine/D-alanine ligase [Caldicellulosiruptor obsidiansis OB47]
          Length = 364

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKVLIEQAINAREIECAVLGNDEVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDDSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|145637108|ref|ZP_01792771.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
 gi|145269762|gb|EDK09702.1| D-alanylalanine synthetase [Haemophilus influenzae PittHH]
          Length = 306

 Score =  192 bits (488), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|290476451|ref|YP_003469356.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
 gi|289175789|emb|CBJ82592.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           bovienii SS-2004]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG++  + L++AG     +D        L       AF  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQSVVAGLKEAGINAYSVDTKDFDVTKLKGEGFSKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---------I 111
             GEDG +Q +LE L+IPYT SG++ASALSMDK+R+KQ+     +PV P           
Sbjct: 65  RGGEDGTLQGVLEFLQIPYTGSGVMASALSMDKLRTKQLWQGAKLPVSPYAAINAQKFEQ 124

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + +    +    +  P ++KP   GSS+G+  +     +   L    ++ H   +L+E++
Sbjct: 125 VNDFQLQEYVRELGLPLMVKPNLEGSSVGMTKVNDYSELRGAL--ELAFQHDTDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L    I  P   FY Y+ KY S  + +  P+ +  +   E+  +A
Sbjct: 183 LLGPEYTVAFLGDEVLPSIRIQAP-EVFYDYDAKYLSNETKYFCPSGLSAEKELELAEIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D  +   + LE+N  PGMT  S+ P  A  +G SF +L++ 
Sbjct: 242 SKAYKALGCSGWGRVD-IMDDGNGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVVK 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|332977768|gb|EGK14528.1| D-alanine-D-alanine ligase B [Psychrobacter sp. 1501(2011)]
          Length = 330

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 99/296 (33%), Positives = 159/296 (53%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A   AL+  G + +  D        L +   D  FNVLHG
Sbjct: 36  VAVVYGGSSNERDVSLNSGNAVLKALQSQGVEATHFDPKHQDVTELKN--YDRVFNVLHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L+ L+IP T SG+LASA+ MDK+R+KQ+   CG+   P  ++ + T   
Sbjct: 94  RGGEDGQLQGLLDWLQIPQTGSGVLASAIGMDKVRTKQLWLGCGLSTAPFAVLTKDTDWQ 153

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q +  +  P ++KP+  GSS+G+  +     +P     +S    GD ++ E+++ G E T
Sbjct: 154 QVVSALGLPLIVKPVHEGSSIGMSKVNTLDELPKAFELASGC--GDVVMAEKWIAGREFT 211

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     S+FY YE KY+  ++ + +P  +  +    +Q L+  A +A
Sbjct: 212 IVIIDDEAYPVIRLQPADVSNFYDYEAKYNRNDTMYHIPCGLSEEEETHLQALSLAAFKA 271

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G  R D + D  +   + LEIN  PGMT  S+ P  A   G  F +L   ++
Sbjct: 272 VDAEGWGRIDAMQDE-NGNFWLLEINTVPGMTSHSLVPMAAKARGMDFEQLCWHIL 326


>gi|218893501|ref|YP_002442370.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
 gi|218773729|emb|CAW29543.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa LESB58]
          Length = 319

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 156/302 (51%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     +L  A      IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSLLAARVDAFGIDVGEDLLQRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWLSLGLPTPDYAVLASEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLVELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +      E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKESELKELTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|16273066|ref|NP_439298.1| D-alanine--D-alanine ligase [Haemophilus influenzae Rd KW20]
 gi|260580224|ref|ZP_05848054.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
 gi|1169257|sp|P44405|DDL_HAEIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1574696|gb|AAC22795.1| D-alanine--D-alanine ligase (ddlB) [Haemophilus influenzae Rd KW20]
 gi|260093508|gb|EEW77441.1| D-alanylalanine synthetase [Haemophilus influenzae RdAW]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  + +  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQALSTLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|16763520|ref|NP_459135.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|167990003|ref|ZP_02571103.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168820876|ref|ZP_02832876.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|197264240|ref|ZP_03164314.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|22095577|sp|Q8ZRU1|DDLB_SALTY RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|16418630|gb|AAL19094.1| D-alanine-D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|197242495|gb|EDY25115.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|205331483|gb|EDZ18247.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205342502|gb|EDZ29266.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|261245363|emb|CBG23152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267991808|gb|ACY86693.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156758|emb|CBW16233.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911099|dbj|BAJ35073.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084373|emb|CBY94166.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Weltevreden str.
           2007-60-3289-1]
 gi|321222296|gb|EFX47368.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128450|gb|ADX15880.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987083|gb|AEF06066.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|239813928|ref|YP_002942838.1| D-alanine--D-alanine ligase [Variovorax paradoxus S110]
 gi|239800505|gb|ACS17572.1| D-alanine/D-alanine ligase [Variovorax paradoxus S110]
          Length = 323

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 96/308 (31%), Positives = 154/308 (50%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL SG     AL   G      D      + L        F  LHG
Sbjct: 12  VAVLFGGSSAEREISLLSGNGVLEALRSRGVDAHAFDPAERDLVELRREGFARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P    + +       
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPRYVRLAFDQQSR 131

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + +      +  P ++KP + GSS+G+  ++    +   +  S+   +   +L E++++G
Sbjct: 132 EQVRAVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSA--RYDADVLCEEFIEG 189

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC V+G                   Y Y+ KY + +  +  P+ +P     E+QR+ 
Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPEGAYDYQNKYFTDDVKYHCPSGLPEAEEHEIQRIT 249

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  +G ++ +L L 
Sbjct: 250 LAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARASGIAYEDLCLR 309

Query: 292 MVEDASCL 299
           ++  AS  
Sbjct: 310 VLASASLD 317


>gi|200387797|ref|ZP_03214409.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|199604895|gb|EDZ03440.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|323701728|ref|ZP_08113399.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
 gi|323533264|gb|EGB23132.1| D-alanine/D-alanine ligase [Desulfotomaculum nigrificans DSM 574]
          Length = 311

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 98/306 (32%), Positives = 165/306 (53%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+A   AL + G+ V +IDV   +   +   + +LAF  LHG
Sbjct: 5   VGVLCGGRSAEREVSLRSGEAVYQALLNCGYDVVKIDVGFDIAEQIKQHQIELAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
            +GEDG +Q +LELL+IPYT SG+LASA++++K+ +K++    G+P     ++       
Sbjct: 65  KYGEDGTIQGLLELLDIPYTGSGVLASAIAINKITTKKLFKLEGIPTPDFTVITRNEVSN 124

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +     +  L+  P V+K    GS++GI  + + + +   + +S  ++    +    
Sbjct: 125 LGLDHACKKALDLVGLPAVVKANTQGSTIGISFVHQAEQMGAAIEESLKYDQDVLVEKFI 184

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
               +  +     D            +  Y Y+ KY+   S H++P ++P +   ++++L
Sbjct: 185 SGMEVTASVLGNQDPVALPLIEITSVTGVYDYQAKYTPGISDHIIPPRLPEETQNKIKQL 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A Q +GCRG+ R DF+      +V+ LE+N  PGMT  S+FP+ A YAG  F +L+ 
Sbjct: 245 AVKAFQVLGCRGLGRVDFMV--QGSEVYALEVNTLPGMTATSLFPDAARYAGMEFPQLVD 302

Query: 291 WMVEDA 296
            +V+ A
Sbjct: 303 KLVKLA 308


>gi|260853305|ref|YP_003227196.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|257751954|dbj|BAI23456.1| D-alanine:D-alanine ligase [Escherichia coli O26:H11 str. 11368]
 gi|323157841|gb|EFZ43944.1| D-alanine--D-alanine ligase B [Escherichia coli EPECa14]
          Length = 306

 Score =  192 bits (488), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLDSY-GQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|315125605|ref|YP_004067608.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
 gi|315014118|gb|ADT67456.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas sp. SM9913]
          Length = 306

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 154/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  +AL D G      D        L  L  D  F  LHG
Sbjct: 11  VAVLLGGNSAERDVSLKSGQAVLNALLDVGIDAIAFDPQNRSLWELKSLYVDRVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE + +PYT S +L SAL+MDK+R K +  S G+   P  +V+      
Sbjct: 71  RGGEDGTVQGALEFMNLPYTGSNVLGSALAMDKIRCKHLFKSAGLSTAPYAVVDAKKGFD 130

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + I       ++KP   GSS+G+      + +   L  ++++    Q+L+EQ++ G E 
Sbjct: 131 ANAIMAQFKKVMVKPSHEGSSIGMAQASSAEELEDAL--TNAFKFDSQVLVEQWITGREF 188

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+GD    V E++ P    Y Y+ KY S ++ +  PA +     +++Q +A  A   
Sbjct: 189 TITVLGDEVQPVIEMSTPNGF-YDYQAKYQSSSTQYHCPADLSPSDTQKLQAMALDAFDL 247

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P  A   G SF +L++ ++E 
Sbjct: 248 VGASGWGRVDAMQDEQ-GHFYLLEVNTVPGMTEKSLVPMAAKANGASFEQLVVRILEQ 304


>gi|120609517|ref|YP_969195.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
 gi|190359104|sp|A1TKD3|DDL_ACIAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120587981|gb|ABM31421.1| D-alanine--D-alanine ligase [Acidovorax citrulli AAC00-1]
          Length = 334

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 150/304 (49%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L        F  LHG
Sbjct: 18  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT  G++ASA++MDK+ +K++    G+P      +     T 
Sbjct: 78  RHGEDGTVQGALELLGIPYTGPGVMASAIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 137

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            +S   +  ++L EQ+++G E T
Sbjct: 138 QALEDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIEGEETT 195

Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G             V     Y Y+ KY +  + +  P  +P    +E+QRL   A 
Sbjct: 196 CPVLGQGAGAHALPVIRIVAPEGNYDYQNKYFTDVTQYHCPCGLPEQEEREIQRLVVEAF 255

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L ++  
Sbjct: 256 RTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILAG 315

Query: 296 ASCL 299
           AS  
Sbjct: 316 ASLD 319


>gi|91200089|emb|CAJ73132.1| strongly similar to D-alanine:D-alanine ligase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 334

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 120/319 (37%), Positives = 159/319 (49%), Gaps = 25/319 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S ERE+SL SG A A AL+DAG  V  IDV       L H + D+AF  LHG
Sbjct: 6   IAVLMGGVSPEREISLRSGNAVAKALKDAGNNVICIDVKDEDIKELDHKEIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115
            FGEDG VQ +LE+  IPYT SG+ AS ++MDK+ SK+     G+           +   
Sbjct: 66  YFGEDGRVQQLLEVKGIPYTGSGVDASRIAMDKVESKRCFLDAGLKTPEYFLLKKPVNLA 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                      P VIKP  GGSS+G+ +IK+  +         +   GD+  +E+YV G 
Sbjct: 126 DIEQEIQEFGLPVVIKPTNGGSSIGVSIIKEGNNFH--YHVGEALKCGDEAFVERYVSGR 183

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYS-----------------YELKYSSLNSTHVLPAK 218
           E T G++   SL + EI V    F                   +E K + LN+       
Sbjct: 184 EFTIGILDSRSLPIIEICVADDFFDYNAKYNSGKTRYFVINKTFENKTNILNTPCCDVGF 243

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   +Y + Q LA  AH AIGCRG SR D L D  +   + LE+N  PG T  S+ P  A
Sbjct: 244 LDAALYDKAQELAIEAHNAIGCRGFSRVDILLDNKND-FYILEVNTIPGFTEKSLLPMAA 302

Query: 279 AYAGYSFRELLLWMVEDAS 297
             A  SF  L   +V+ AS
Sbjct: 303 RAADISFTSLCEKIVDLAS 321


>gi|326564830|gb|EGE15038.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 12P80B1]
 gi|326566495|gb|EGE16642.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 103P14B1]
 gi|326571235|gb|EGE21258.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC8]
 gi|326577220|gb|EGE27113.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 101P30B1]
          Length = 307

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +  S
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+ ++++   +    +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L      +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|312126949|ref|YP_003991823.1| d-alanine/d-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
 gi|311776968|gb|ADQ06454.1| D-alanine/D-alanine ligase [Caldicellulosiruptor hydrothermalis
           108]
          Length = 364

 Score =  192 bits (487), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFVSPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       D  +      
Sbjct: 186 NSGSSVGISKAKDREDLALAIHEAFLYDTKILIEQAINAREIECAVLGNDDVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVIEEIKDLAARIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  ++G  + +L+  ++  A
Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSGIPYSQLIDKLISLA 348


>gi|62178697|ref|YP_215114.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|62126330|gb|AAX64033.1| D-alanine-D-alanine ligase B, affects cell division [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322713150|gb|EFZ04721.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 306

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGSAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|91776618|ref|YP_546374.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
 gi|122985407|sp|Q1GZ04|DDL_METFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91710605|gb|ABE50533.1| D-alanine--D-alanine ligase [Methylobacillus flagellatus KT]
          Length = 302

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 146/298 (48%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL   G      D        LA    D  F  LHG
Sbjct: 8   VAVLLGGKSGEREVSLKSGAAVLAALRRNGVDAHAFDPAERALSELA--GFDRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG +Q  LEL+ IPYT SG++AS++ MDK R+K +  + GV       +  +    
Sbjct: 66  RYGEDGTIQGALELMGIPYTGSGVMASSVGMDKWRTKLLWRAAGVVTPDFELVTADSNFD 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K    +      +      D L+I +   G    
Sbjct: 126 AIERKLGLPLFVKPANEGSSIGISKVKAAGGLQAAYALA---AKSDPLVIAEQFVGGGEY 182

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   +       VP ++FY YE KY   ++ ++ P  +   + ++++  A  A + +
Sbjct: 183 TVGILGGAALPVIRIVPANEFYDYEAKYLRDDTQYLCPCGLDASLEEQIKAEALQAFRIV 242

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D    + ++LE+N  PGMT  S+ P  A   G  F EL+L ++E A
Sbjct: 243 GGRGWGRVDFLMDEA-GRHYFLEVNTSPGMTDHSLVPMGAKAVGLGFDELVLSILELA 299


>gi|296112511|ref|YP_003626449.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
 gi|295920205|gb|ADG60556.1| D-alanine-D-alanine ligase B DdlB [Moraxella catarrhalis RH4]
          Length = 307

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVICGGKSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +  S
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+ ++++   +    +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L      +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|241667465|ref|ZP_04755043.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876012|ref|ZP_05248722.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254842033|gb|EET20447.1| D-alanine-D-alanine ligase B [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 297

 Score =  192 bits (487), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPM-AKFLTDRLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               IS P  +KP  GGSS+    +K  + +     Q+S      +++IEQ+V G E+T 
Sbjct: 125 EADEISFPVAVKPSSGGSSIATFKVKSFEELENAYQQASKH---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ +          P ++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNNDVYSSVW-IEPLNEFYDYESK-YSGKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           C+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|88858804|ref|ZP_01133445.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
 gi|88819030|gb|EAR28844.1| D-alanine-D-alanine ligase B, affects cell division
           [Pseudoalteromonas tunicata D2]
          Length = 304

 Score =  192 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 96/298 (32%), Positives = 156/298 (52%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG+A  +AL   G      D        L  L+ D AF  LHG
Sbjct: 9   VAVLMGGSSAERDVSLRSGQAVLNALISQGVDAFAFDPAERNLFDLKSLQTDRAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L +PYT SG+L SAL+MDK+R K++  + G+     ++V +     
Sbjct: 69  RGGEDGTIQGALEFLGLPYTGSGVLGSALAMDKVRCKELFKARGLSSAEFVVVEQGAQFD 128

Query: 121 QHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I       ++KP   GSS+G+        +   +  S+++   D +++E+++ G E 
Sbjct: 129 SQAIINEFGAVMVKPAHEGSSIGMAKAATASELNEAI--SNAFRFDDTVMLEKWITGREF 186

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++   +  + E+  P+   Y YE KY + ++ +  PA++     + +Q LA  A + 
Sbjct: 187 TVTMISGVAQPIVEMVTPRGF-YDYEAKYQANSTQYYCPAELSQSETENLQLLAQHAFKL 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D    + + LE+N  PGMT  S+ P  A   G +F +L++ ++E 
Sbjct: 246 VGASGWGRVDAMRDQA-GQFYLLEVNTVPGMTEKSLVPMAAKANGMNFSQLVINILEQ 302


>gi|168234894|ref|ZP_02659952.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|194734683|ref|YP_002113148.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|194710185|gb|ACF89406.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197291932|gb|EDY31282.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. SL480]
 gi|322615951|gb|EFY12868.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620735|gb|EFY17595.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623913|gb|EFY20750.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322627361|gb|EFY24152.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322630668|gb|EFY27432.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322638112|gb|EFY34813.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322640598|gb|EFY37249.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322647739|gb|EFY44224.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322648088|gb|EFY44555.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322656880|gb|EFY53166.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322657410|gb|EFY53682.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322663729|gb|EFY59929.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322666562|gb|EFY62740.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322672279|gb|EFY68391.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322676409|gb|EFY72480.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322679498|gb|EFY75543.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322686173|gb|EFY82157.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323195017|gb|EFZ80203.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323200074|gb|EFZ85161.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323201105|gb|EFZ86174.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323209502|gb|EFZ94435.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323212246|gb|EFZ97070.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323216551|gb|EGA01277.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323219900|gb|EGA04378.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323225820|gb|EGA10040.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323228638|gb|EGA12767.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323236748|gb|EGA20824.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323239751|gb|EGA23798.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323242201|gb|EGA26230.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323249375|gb|EGA33291.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323252292|gb|EGA36143.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323256618|gb|EGA40348.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323262987|gb|EGA46537.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265472|gb|EGA48968.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323271740|gb|EGA55158.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 306

 Score =  192 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|90020497|ref|YP_526324.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
 gi|122996461|sp|Q21MG7|DDL_SACD2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89950097|gb|ABD80112.1| D-alanine--D-alanine ligase [Saccharophagus degradans 2-40]
          Length = 314

 Score =  192 bits (486), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 100/293 (34%), Positives = 149/293 (50%), Gaps = 6/293 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG SSEREVSL SG A   AL+  G     +DV       +    PD  F  LHG  
Sbjct: 21  VLFGGTSSEREVSLRSGAAVLQALQAGGVDAHGLDVQADAIAKIEAFAPDRVFIALHGPG 80

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +QA+L+ L IPYT S   ASAL+MDK+++KQV  S G+       +   +     
Sbjct: 81  GEDGKMQAVLDWLAIPYTGSDHAASALAMDKLKTKQVWQSVGLVTPEYASLVENSDWQAV 140

Query: 123 L--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           L  +     +KP   GSS+G+ V+   Q +     +++   +  ++L+E+ + G E T  
Sbjct: 141 LDSLGGQGFVKPAHEGSSIGMSVVSTAQELKAAYEKAAH--YDAKVLVERRIVGREFTVA 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L    +       Y Y+ KY S  + ++ P  +  +   E+Q +A  A  A+GC
Sbjct: 199 VLNGVALPAIGLKTDHVF-YDYDAKYVSNTTQYLCPCGLTQEKEAELQSIAQQAFAAVGC 257

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G  R DF+ D      + LE+N  PGMT  S+ P  A  +G  F EL+L ++
Sbjct: 258 KGWGRVDFMQDEAGN-FYLLEVNTVPGMTDHSLVPMAARQSGIEFNELVLEIL 309


>gi|145588357|ref|YP_001154954.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gi|190359204|sp|A4SV76|DDL_POLSQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145046763|gb|ABP33390.1| D-alanine--D-alanine ligase [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 337

 Score =  192 bits (486), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 152/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S ERE+SL SG     AL   G      D        LA  K D  F  LHG
Sbjct: 30  VGVLLGGRSGEREISLMSGNGVLQALLSKGVDAHGFDPGLRNPTELATEKFDRIFISLHG 89

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LELLE+PYT SG+LASAL++DK+ +KQ+  S G+       +   +  +
Sbjct: 90  RFGEDGTIQGLLELLELPYTGSGVLASALAIDKIATKQIWISNGLSTPEYEELTAKSDWN 149

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P ++KP   GSSLG+  +K  + +P     ++      +++ E  + G ELT
Sbjct: 150 AVVKHLGLPLIVKPAHEGSSLGLTKVKSVEELPAAYQLAAGL--DKKVIAETCIVGDELT 207

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C        A        +P    Y +  KY S  + ++ P  +  +I   VQ LA  A+
Sbjct: 208 CPLVGQGNSAEALPVIKIIPPQANYDFHNKYFSDETQYLCPTGLTAEINAAVQDLALAAY 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           Q +GCR   R+D + D  + K + LE+N  PGMT  S+ P  A  AG  + +L+LW++
Sbjct: 268 QTLGCRTWGRADVMLDKKTGKPYLLEMNTSPGMTSHSLVPMAAKAAGVEYADLVLWLL 325


>gi|260913005|ref|ZP_05919490.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
 gi|260632995|gb|EEX51161.1| D-alanine-D-alanine ligase B [Pasteurella dagmatis ATCC 43325]
          Length = 318

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 111/303 (36%), Positives = 174/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+A  +AL +AGF    ID        L     D  FN+LHG
Sbjct: 19  IAVLLGGTSAEREVSLNSGQAVLNALLNAGFDAHPIDPKNFPVASLKEQGFDRVFNILHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + IPYT  G++ASAL+MDKMR+K +  + G+PV    +V +  +  
Sbjct: 79  RGGEDGTMQGLLEQIGIPYTGCGVMASALTMDKMRTKMLWKAFGLPVAEMEIVTKNNVAE 138

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 139 LNPAEVVEKLGLPLMVKPSLEGSSVGLTKVKAVEDLKSAV--DFALKFDETVLIEEWLAG 196

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+ +L   A
Sbjct: 197 DELTIPVLDNEVLPAV-RIVPEGEFYDYEAKYLSDNTQYFCPAGLSKEREQELNQLVKRA 255

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D +      +   +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 256 YDVVGCRGWSRIDVM-TDSKGQFRLVEVNTNPGMTSHSLFPKSAAVVGYSFEQLVVRILE 314

Query: 295 DAS 297
            ++
Sbjct: 315 LSA 317


>gi|86609556|ref|YP_478318.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|123501569|sp|Q2JJV2|DDL_SYNJB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86558098|gb|ABD03055.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-2-3B'a(2-13)]
          Length = 325

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 114/303 (37%), Positives = 168/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           + VL GG S+ER+VS  +GKAC  ALED G +V  ID D  + L L   +    D  +  
Sbjct: 3   IVVLAGGRSAERQVSWVTGKACKRALEDLGHRVKVIDPDEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF- 116
           LHG  GEDG+VQ +L+ L +PY  SG LASAL+MDK+ SKQ+  + G+P     + +   
Sbjct: 63  LHGPGGEDGVVQGMLDWLGLPYQGSGPLASALAMDKLVSKQIFRAAGIPTPDWQVWDDQN 122

Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D    +  P VIKP   GS++GI +++ ++S    L  + S     ++ +E+YV 
Sbjct: 123 PLTWADCAAELGSPLVIKPSNNGSTVGISIVRDERSFAQGLELARSV--SSRIFLERYVP 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        +     
Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSPAGLARCEAAGLK 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+QA+GC G++R D   DP     + LE+N  PGMTP S+ P+ AA  G++F EL+  M+
Sbjct: 241 AYQALGCEGLARVDLRVDPEEN-PWVLEVNTLPGMTPTSLCPDAAAALGWTFTELVERML 299

Query: 294 EDA 296
           +DA
Sbjct: 300 QDA 302


>gi|326568017|gb|EGE18109.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC7]
          Length = 307

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 15  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +  S
Sbjct: 73  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 132

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+ ++++   +    +      +  ++L E+ + G E  
Sbjct: 133 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L      +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 191 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 250 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 305


>gi|326561547|gb|EGE11890.1| D-alanine--D-alanine ligase [Moraxella catarrhalis 7169]
 gi|326570679|gb|EGE20713.1| D-alanine--D-alanine ligase [Moraxella catarrhalis BC1]
 gi|326573082|gb|EGE23055.1| D-alanine--D-alanine ligase [Moraxella catarrhalis CO72]
 gi|326577785|gb|EGE27657.1| D-alanine--D-alanine ligase [Moraxella catarrhalis O35E]
          Length = 333

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG A  +AL   G      D   +    L     D  FNVLHG
Sbjct: 41  VAVVCGGTSTEREVSLNSGMAVLNALLSKGVDAHHFDPADTDISHLRA--YDRVFNVLHG 98

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +L+   +PYT  G+LASA++MDK R + +  S G+P  P ++++  +  S
Sbjct: 99  TFGEDGSLQGVLDGFNLPYTGCGVLASAIAMDKFRCRLLWQSLGLPNVPYVVLHDDSDFS 158

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G+ ++++   +    +      +  ++L E+ + G E  
Sbjct: 159 AVEREFGLPLFVKPAAEGSSVGVFMVEQAGDL--AKIYPKLKQYHGEILAEKAMMGGEYA 216

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L      +PK  FY YE KY   ++ +  P+ +  +  +++  LA  A +AI
Sbjct: 217 IPLLGEQVLPSI-RIIPKGKFYDYEAKYLRDDTIYQCPSDLTPEQERQMGELALKAFRAI 275

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G RG SR DF       K++ LEIN  PGMT  S+ P  A  AG  F EL L ++  
Sbjct: 276 GGRGWSRVDF-LKGHDGKLYVLEINTVPGMTDHSLVPMAAKEAGIGFDELCLQILRQ 331


>gi|152988032|ref|YP_001350318.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
 gi|150963190|gb|ABR85215.1| D-alanine--D-alanine ligase [Pseudomonas aeruginosa PA7]
          Length = 319

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 157/302 (51%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG     ++  AG     IDV   +   L   K D AF +LHG
Sbjct: 21  VAVLFGGKSAEREVSLKSGAMVLQSMLAAGVDAFGIDVGDDLLHRLVEEKIDRAFIILHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SG+LASAL+MDK+R+K+V  S G+P     +        
Sbjct: 81  RGGEDGSMQGLLECAGIPYTGSGVLASALAMDKLRTKRVWRSLGLPTPDYAVLGSEDDCR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP   GSS+G+  +     +        +  +  Q+L+EQ++ G E T
Sbjct: 141 EAAQRLGFPLIVKPAHEGSSIGMAKVGGLDELIAA--WREAARYDSQVLVEQWISGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P +  Y Y+ KY + ++ + +P  +      E++ L   A  A+
Sbjct: 199 VATLRGQVLPAIRLGTPHTF-YDYDAKYLASDTRYQVPCGLDEAKESELKDLTARACDAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G +G  R+D + D    + + LE+N  PGMT  S+ P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIQGWGRADVMQDAE-GRFWLLEVNTAPGMTDHSLVPMAARAAGLDFQQLVLAILADSRE 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|330445163|ref|ZP_08308815.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328489354|dbj|GAA03312.1| D-alanine--D-alanine ligase [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 303

 Score =  191 bits (485), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 172/301 (57%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG SSEREVSL SG    SA++  G  V Q+D       +L   K D  F  LHG
Sbjct: 3   VGVLCGGRSSEREVSLKSGAQIVSAVKALGHDVIQLDPCSIDLSMLNLYKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115
             GE G +QA+L++L+IPY  SG+LASA+S++K+++K+V S+ G+   P +         
Sbjct: 63  GLGESGHIQALLDILQIPYVGSGVLASAISLNKLKTKEVWSANGLLTAPWVLVRKSTSQS 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             + +   I+ P VIKPL  G S+G+     ++ +   L   +++ + D++L+EQ++ G 
Sbjct: 123 DILKACGEITFPVVIKPLNQGCSIGVAKADNEEQLWQAL--LAAFEYDDEVLVEQFIVGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+ D +L V +I      F+ +  K+ + ++T+  P+ +     K +Q++   A+
Sbjct: 181 EYTCAVLNDEALPVVQIC--SDTFFDWSAKFGTQSATYHCPSDLSEQEEKSMQQVVKAAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GCRG  R D L    +  V+ +E+N  PGMT  S++P  AA AG ++  L+  +++ 
Sbjct: 239 KALGCRGWGRVDVLLTE-NNDVYLIEMNTIPGMTERSVYPMAAAQAGLTYEALIAKLLDK 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|332095383|gb|EGJ00406.1| D-alanine--D-alanine ligase B [Shigella boydii 5216-82]
          Length = 306

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG    + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAVVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALS+DK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSIDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMTKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|311693457|gb|ADP96330.1| D-alanine-D-alanine ligase [marine bacterium HP15]
          Length = 323

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 6/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL  AG     +DV   +   + +   D  F  LHG
Sbjct: 22  VAVFMGGDSAEREVSLKSGKAVLAALVSAGVDAFAVDVRGCLLRTVDNPDFDRVFIALHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P      ++      
Sbjct: 82  RGGEDGTLQAILSQAGIPYTGSDVLASALAMDKLRTKYVFEGCGLPTPKFRTMSGADQAE 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP + GSS+G  + K   +  L     ++    + +L+E++++G E T
Sbjct: 142 QIIDELRAPLSVKPSREGSSIG--IRKVHTAAELAHAYEAAAALDNLVLVEEWIEGPEFT 199

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +L    ++      FY YE KY + ++ + +P  +  +    +Q LA  A + 
Sbjct: 200 VSLLQDRALPAIGLSASTEHVFYDYEAKYLADDTRYRIPCGLAPEDEVRLQHLALEAFRV 259

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR   R D + D    K + LE+N  PGMT  S+ P  A  AG SF EL++ +++D+
Sbjct: 260 VGCRTWGRVDIMQD-SDGKFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILKDS 317


>gi|253699160|ref|YP_003020349.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
 gi|259645167|sp|C6DZK9|DDL_GEOSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|251774010|gb|ACT16591.1| D-alanine/D-alanine ligase [Geobacter sp. M21]
          Length = 305

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 126/297 (42%), Positives = 187/297 (62%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  K ++AF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVRQGFQAVGIDVGRDLPQRLAEEKAEVAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLTLAPYQVLRRG-EEF 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ +++    +   L    ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L      VPK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+GC
Sbjct: 188 ILDGKALGAI-EIVPKGEFYDYEAKYTDGGAQHILPARLPEAVYGEVLRQGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGITFGELVLRILQAAS 302


>gi|161612474|ref|YP_001586439.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|161361838|gb|ABX65606.1| hypothetical protein SPAB_00164 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 306

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGINAHPVDPQEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|254786995|ref|YP_003074424.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
 gi|237685827|gb|ACR13091.1| D-alanine--D-alanine ligase B [Teredinibacter turnerae T7901]
          Length = 317

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 153/295 (51%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG+A A+ L + G  + ++D+       +     D AF  LHG
Sbjct: 19  VAVLYGGTSAERDVSLKSGRAVANGLREQGIDILELDIGNQGVAQILAATFDRAFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQA+L+LL IP+T S   ASA++MDK+++KQ+  S  +P     ++      +
Sbjct: 79  EGGEDGKVQALLQLLGIPFTGSLHTASAIAMDKLKTKQIWLSASLPTPDYRVLQSSDDFA 138

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L  +     +KP+  GSS+G+      + +       ++     ++  E  V G E T
Sbjct: 139 ACLQALGGSVFVKPVHEGSSIGMTCANNKEELKAAF--EAAEKFDSEVFAESTVVGREFT 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+  L   E+ +P + FY Y+ KY S  + ++ P  +  D  KE+  LA  + + I
Sbjct: 197 VAILGETVLPPIEL-LPSNRFYDYDAKYISNETRYLCPCNLTPDKNKELCELALKSFKMI 255

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GC G  R D L D        LE+N  PGMT  S+ P  A   G +F EL+  ++
Sbjct: 256 GCSGWGRVDALQDEAGN-FHLLEVNTVPGMTDHSLVPMAARAVGLNFSELVAEIL 309


>gi|167626884|ref|YP_001677384.1| D-alanyl-alanine synthetase A [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|190359131|sp|B0TVX5|DDL_FRAP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167596885|gb|ABZ86883.1| D-alanine--D-alanine ligase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 297

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 155/299 (51%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L + G+    +D   + + + L  L PD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLLNQGYDAVGLDASSKDLVVKLLELNPDKCFIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LELL I +T S + +  ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVAALLELLGIKHTGSTMKSCVVTMDKMISKEILMHHRMPTPM-AKFLTDRLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               IS P  +KP  GGSS+    +K  + +     Q+S      +++IEQ+V G E+T 
Sbjct: 125 EADEISFPVAVKPSSGGSSIATFKVKSLEELENAYQQASKH---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ +          P ++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNNDVYSSVW-IEPLNEFYDYESK-YSGKSIYHAPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           C+G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A C
Sbjct: 240 CKGHARVDFIYDDK-GDFYIMEINSSPGMTENSLSPKSAAAEGIDFDSFVKSILEQAQC 297


>gi|148652338|ref|YP_001279431.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
 gi|190359207|sp|A5WCU0|DDL_PSYWF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148571422|gb|ABQ93481.1| D-alanine--D-alanine ligase [Psychrobacter sp. PRwf-1]
          Length = 332

 Score =  191 bits (485), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 152/296 (51%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL+  G   +  D        L +   D  FNVLHG
Sbjct: 38  VAVVFGGNSNERAVSLDSGNAVLQALQSQGIDATHFDPKDQDVTELKN--YDRVFNVLHG 95

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +L+ L +P T SG+LASA+ MDK+R+KQ+   CG+   P  +   +    
Sbjct: 96  RGGEDGQLQGLLDWLGLPQTGSGVLASAIGMDKVRTKQLWHGCGLSTAPFAVLGADTDWQ 155

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              + +  P ++KP+  GSS+G+  +     +P     ++    GD ++ E+++ G E T
Sbjct: 156 QIVNTLGLPLIVKPVHEGSSIGMSKVNTLDELPKAYEVAAGC--GDVVMAEKWITGREFT 213

Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V        S+FY YE KY+  ++ + +P  +  +    +Q L+  A +A
Sbjct: 214 IVIIDDEAYPVIRLQPADISNFYDYEAKYNRNDTQYHIPCGLSAEEEAHLQALSLAAFKA 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G +F +L   ++
Sbjct: 274 VDAKGWGRIDAMQDEEGN-FWLLEINTVPGMTSHSLVPMAAKARGMNFEQLCWHIL 328


>gi|241765424|ref|ZP_04763394.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
 gi|241364829|gb|EER59802.1| D-alanine/D-alanine ligase [Acidovorax delafieldii 2AN]
          Length = 337

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D        L        F  LHG
Sbjct: 16  VAVLMGGASAEREVSLMSGAGVLQALRSRGVDAHAFDPAERDLGELRREGFARCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT  G++AS++SMDK+ +K++  + G+P      +     T+
Sbjct: 76  RHGEDGTVQGALELLGIPYTGPGVMASSMSMDKIMTKRIWRAEGLPTPDWRLVASVEETV 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P ++KP + GS++G+  +           Q+S   +  ++L EQ+++G E T
Sbjct: 136 EALETLGAPMIVKPSREGSTIGLSKVFSPDECAKAYEQAS--RYDPEVLCEQFIEGDETT 193

Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  P+ +P    +E+QRL   A 
Sbjct: 194 CPVLGEGAGAHALPVIRIVAPQGNYDYQNKYFTDDTQYHCPSGLPEAQEREIQRLVVQAF 253

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ +L + ++  
Sbjct: 254 RTLGCRGWARADIMIRACDRKPFLLEINTSPGMTGHSLVPMSARALGISYEDLCVGLLAT 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 ATLD 317


>gi|326315572|ref|YP_004233244.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
 gi|323372408|gb|ADX44677.1| D-alanine--D-alanine ligase [Acidovorax avenae subsp. avenae ATCC
           19860]
          Length = 335

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL   G      D  +S    L        F  LHG
Sbjct: 19  VAVLMGGDSAEREVSLMSGGGVLQALRARGVDAHAFDPSQSDLSELKSHGYARCFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT  G++AS+++MDK+ +K++    G+P     LV+     +
Sbjct: 79  RHGEDGTVQGALELLGIPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVSSAAETA 138

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           Q L     P ++KP + GS++G+  +            +S   +  ++L EQ++DG E T
Sbjct: 139 QALKDLGSPMIVKPSREGSTIGLTKVTSPGQCEQAYRLAS--RYDPEVLCEQFIDGEETT 196

Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G             V     Y Y+ KY +  + +  P+ +P    +E++RL   A 
Sbjct: 197 CPVLGQGAGAHALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEQEEREIRRLVVEAF 256

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + CRG +R+D +     RK F LEIN  PGMT  S+ P  A   G S+ EL L ++  
Sbjct: 257 RTLQCRGWARADIMIRASDRKPFLLEINTSPGMTGHSLVPMSARAMGVSYEELCLRILAG 316

Query: 296 ASCL 299
           AS  
Sbjct: 317 ASLD 320


>gi|90407786|ref|ZP_01215964.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
 gi|90311146|gb|EAS39253.1| D-alanine-D-alanine ligase B [Psychromonas sp. CNPT3]
          Length = 307

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 163/299 (54%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG+A  SAL   G     ID        L     D AF VLHG
Sbjct: 8   VAVLFGGTSAEREVSLRSGQAVLSALVAQGINAIAIDPKIDDVTQLKAQGFDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L+IPYT S +L+SA++MDK ++KQ+  S G+P     ++ +   D 
Sbjct: 68  RGGEDGTIQGLLTYLQIPYTGSDVLSSAITMDKSKTKQIWKSVGLPTAKYQIIIKNHYDP 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +S   ++KP+  GSS+G+  +   + +   L    ++    ++L+E +++G
Sbjct: 128 SQAKDILKELSGTVMVKPVNEGSSIGMAKVDNVEDLNKAL--LDAFKFDKKVLLETWIEG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++  A+L         +DFY Y+ KY S  + +  P  +     + + +LA  A
Sbjct: 186 EEYTVSMLSGAALPAI-KMATDNDFYDYQAKYQSTETRYYCPCGLDDQEMQTLNKLANAA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +IGC+G  R DF+ D  +++ F LEIN  PGMT  S+ P+ A  AGYSF +L+L ++
Sbjct: 245 FSSIGCQGWGRVDFMRDT-NKQWFLLEINSVPGMTETSLVPKAAKQAGYSFEQLVLEIL 302


>gi|52425719|ref|YP_088856.1| D-alanine--D-alanine ligase [Mannheimia succiniciproducens MBEL55E]
 gi|81386800|sp|Q65RY9|DDL_MANSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52307771|gb|AAU38271.1| DdlA protein [Mannheimia succiniciproducens MBEL55E]
          Length = 307

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/303 (36%), Positives = 178/303 (58%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL + G+    ID        L     + AFN+LHG
Sbjct: 9   IAVLLGGTSAEREVSLTSGDAVLTALRNQGYDAHPIDPKEYPVAQLKEQGFERAFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V R T+D 
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTRDTVDE 128

Query: 121 QHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            + +        P ++KP + GSS+G+  +   + +   +    +  H D +LIE+++ G
Sbjct: 129 LNPLEVVERLGLPLMVKPSREGSSVGLTKVNAVEELKNAV--DLALTHDDTVLIEEWLSG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           IE+T  V+ D  L      +P+ +FY Y+ KY S N+ ++ PA +  +  +E+Q+L   A
Sbjct: 187 IEMTVPVLDDQVLPAV-QIIPEGEFYDYDAKYISDNTRYICPAPMSEESLQELQKLVKRA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D +    +     +E+N  PGMT  S+FP+ AA  GYSF +L++ ++E
Sbjct: 246 YDVVGCRGWSRIDVM-TDANGNFRLVEVNTTPGMTSHSLFPKSAATVGYSFEQLVVKILE 304

Query: 295 DAS 297
            ++
Sbjct: 305 LSA 307


>gi|330950222|gb|EGH50482.1| D-alanine--D-alanine ligase [Pseudomonas syringae Cit 7]
          Length = 319

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 162/302 (53%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL+SG A   AL +AG     IDV       L   K D AF VLHG
Sbjct: 21  VAVLFGGKSAERAVSLNSGNAVLGALLEAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 80

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE LEIPYT SG+LASAL+MDK+R+KQV  S G+       +      +
Sbjct: 81  RGGEDGTMQGLLECLEIPYTGSGVLASALAMDKLRTKQVWQSLGLATPLHAVLENESDCI 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 141 CAVTELGLPLIVKPAHEGSSIGMAKVSSVDELIAA--WKAASTYDSQVLVEQWIQGPEFT 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    L    +  P S  Y Y+ KY + ++ + +P  +     +E+++LA  A  AI
Sbjct: 199 VASLRGQVLPPIGLGTPHSF-YDYDAKYLASDTQYRIPCGLGDAQEQELKQLAARACDAI 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G +R+D + D    K + LE+N  PGMT  S  P  A  AG  F++L+L ++ D+  
Sbjct: 258 GIAGWARTDVMQDAQ-GKFWLLEVNTVPGMTDHSQVPMAARAAGLDFQQLVLAILADSVQ 316

Query: 299 LR 300
            R
Sbjct: 317 AR 318


>gi|300938487|ref|ZP_07153227.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300456556|gb|EFK20049.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
          Length = 306

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +       +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGCIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|269137997|ref|YP_003294697.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|267983657|gb|ACY83486.1| D-alanine--D-alanine ligase [Edwardsiella tarda EIB202]
 gi|304558044|gb|ADM40708.1| D-alanine--D-alanine ligase B [Edwardsiella tarda FL6-60]
          Length = 306

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L++AG     +D  R     L     +  F  LHG
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKEAGIDAYPVDTMRFPATQLREAGFERVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + +       
Sbjct: 65  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 124

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                T+   + +  P ++KP + GSS+G+  + +       L    +  H D++LIE++
Sbjct: 125 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPAL--VEALRHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L           FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 183 LAGPEYTVAFIGDEILPSI-RIQAAGAFYDYEAKYLSDKTEYFCPSGLSDEQEQALAALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D    +   LE+N  PGMT  S+ P  A  AG  F +L++ 
Sbjct: 242 RRAYKALGCSGWGRVDVMQDAA-GEFCLLEVNTAPGMTSHSLVPMAARQAGMRFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|118496775|ref|YP_897825.1| D-alanine-D-alanine ligase B [Francisella tularensis subsp.
           novicida U112]
 gi|190359133|sp|A0Q4A6|DDL_FRATN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118422681|gb|ABK89071.1| D-alanine-D-alanine ligase B [Francisella novicida U112]
 gi|328676235|gb|AEB27105.1| D-alanine--D-alanine ligase [Francisella cf. novicida Fx1]
          Length = 296

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|331645202|ref|ZP_08346313.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
 gi|330909939|gb|EGH38449.1| D-alanine--D-alanine ligase B [Escherichia coli AA86]
 gi|331045959|gb|EGI18078.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Escherichia coli M605]
          Length = 306

 Score =  191 bits (484), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 160/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLNDKQLAEISSLGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVTILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  A  SF +L++ 
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQADMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|224581973|ref|YP_002635771.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466500|gb|ACN44330.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 306

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG S  +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSLSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|300722061|ref|YP_003711341.1| D-alanine-D-alanine ligase B [Xenorhabdus nematophila ATCC 19061]
 gi|297628558|emb|CBJ89130.1| D-alanine-D-alanine ligase B, affects cell division [Xenorhabdus
           nematophila ATCC 19061]
          Length = 306

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L++AG     +D        L        F  LHG
Sbjct: 5   VAVLLGGTSAEREVSLQSGQAIVTGLKEAGINAYSVDTKDFDVTKLKEEGFSKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------ 114
             GEDG +Q +LE L++PYT SG++ASA+SMDK+R+KQ+     +PV P + +N      
Sbjct: 65  RGGEDGTLQGLLEFLQLPYTGSGVMASAVSMDKLRTKQLWQGSKLPVSPYVAINSQKFEQ 124

Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    +  P ++KP   GSS+G+  +     +   L  + ++ +   +L+E++
Sbjct: 125 VSDFQLQDYVQELGLPLMVKPNLEGSSVGMTKVNDYAELRGAL--ALAFKYDTDVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G +GD +L    I  P    Y Y+ KY S  + +  P+ + ++  +E+  +A
Sbjct: 183 LFGPEYTVGFLGDEALPSIRIQAPDVF-YDYDAKYISNETQYFCPSGLSVEKEQELVDIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GCRG  R D + D      + LE N  PGMT  S+ P  A  AG+SF +L++ 
Sbjct: 242 SEAYKALGCRGWGRVD-IMDDGKGNFYLLEANTCPGMTSHSLVPLAARQAGFSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|262276883|ref|ZP_06054676.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
 gi|262223986|gb|EEY74445.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [alpha proteobacterium HIMB114]
          Length = 305

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 178/298 (59%), Gaps = 1/298 (0%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S ER VS+ SGKAC  A++  G++V + D  +++   +  + PD+ FN LHG +
Sbjct: 9   ILMGGRSKERSVSIDSGKACYQAIKKIGYEVYKYDPIKNIKNNIKKINPDIVFNCLHGKY 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q ILE L+IPYTHSG+ AS ++MDK++SK++     +      ++ + +     
Sbjct: 69  GEDGKIQKILEKLKIPYTHSGVKASEVAMDKIKSKKIFFKKKIITPNFKIIKKISDIKNK 128

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +    +++KP+  GSSLG+ +  +  +                L+ E Y++G E+   V+
Sbjct: 129 ISKSKFILKPINEGSSLGVQIFPEYPTSKNFKKIKKLIKKYKILIQEPYIEGREIQTAVL 188

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G+ ++   EI   ++ +        S  + H++P KIP  +  +++R+A +AH+++ CRG
Sbjct: 189 GNKAIGSVEIIPKRNFYDYKAKYSLSAKTKHIIPPKIPKRLDNKIKRIALIAHKSLKCRG 248

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ++RSDF   P + K++ LEIN QPGMT +S+ PE+A   G SF EL+ WM++DAS  R
Sbjct: 249 VTRSDFRVMP-NNKIYILEINTQPGMTNLSLVPEIAQNFGLSFTELVDWMIKDASINR 305


>gi|302877581|ref|YP_003846145.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
 gi|302580370|gb|ADL54381.1| D-alanine/D-alanine ligase [Gallionella capsiferriformans ES-2]
          Length = 631

 Score =  190 bits (483), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 104/298 (34%), Positives = 146/298 (48%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  ++L  +G      D        L     D  F  LHG
Sbjct: 335 VAVLFGGRSAEREVSLKSGAAVLASLLRSGVDAHAFDPASRSLQELQEQGFDRVFIALHG 394

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
            FGEDG VQ  LELL IPYT SG++AS+L MDK RSK V  + G+PV   ++       +
Sbjct: 395 RFGEDGTVQGALELLGIPYTGSGVMASSLGMDKWRSKLVWQAGGLPVPDFMMLAEQSEPL 454

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P  +KP   GSS+GI  +K    +     +++     D L+I +   G    
Sbjct: 455 DVIGKLGLPLFVKPANEGSSVGISKVKAVGELQAAYREAARH---DPLVIAERFIGGGEY 511

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +    +       P ++FY +E KY   ++ +  P+ +      ++Q LA  A   I
Sbjct: 512 TVAILGDQVLPVIKIEPANEFYDFEAKYLRDDTCYRCPSGLDAASEAKMQGLAQAAFALI 571

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G +G  R DFL      + + LE N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 572 GGQGWGRVDFLMSEA-GQPYVLEANTSPGMTDHSLVPMAARQAGISFDELVLRVLGMA 628


>gi|257454701|ref|ZP_05619957.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
 gi|257448011|gb|EEV22998.1| D-alanine--D-alanine ligase B [Enhydrobacter aerosaccus SK60]
          Length = 307

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 153/297 (51%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL+SG+A   AL   G      D   +    L     D  FNVLHG
Sbjct: 13  VAVVCGGWSAEREVSLTSGQAVLDALLAKGVDAHHFDPKETDISKLRD--YDRVFNVLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
            FGEDG +Q +L+   IPYT  G+LASA++MDK R++ V  +  +P  P +    N    
Sbjct: 71  TFGEDGSLQGVLDGFNIPYTGCGVLASAIAMDKFRNRLVWQALDLPNVPYVVLDDNTDFT 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+G+  IK+   +           +   +L E+ + G E  
Sbjct: 131 AIEQQLGLPLFVKPAAEGSSVGVFKIKEVGEL--AKTYPQLKQYHGAILAEKAITGGEYA 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C ++GD  L      +P ++FY YE KY+  ++ +  P+ +     + +Q++A  A  AI
Sbjct: 189 CSILGDEVLPSI-RIIPTTEFYDYEAKYNRDDTVYQCPSDLSEAQEQTMQQIARKAFAAI 247

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G +G SR DFL D     ++ LE+N  PGMT  S+ P  A   G  F  L + ++E 
Sbjct: 248 GGKGWSRVDFLRDDE-GTLYLLELNTVPGMTSHSLVPMAAKARGMDFATLCVRILEQ 303


>gi|319791670|ref|YP_004153310.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
 gi|315594133|gb|ADU35199.1| D-alanine/D-alanine ligase [Variovorax paradoxus EPS]
          Length = 323

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/308 (32%), Positives = 154/308 (50%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVS+ SG     AL   G      D      + L        F VLHG
Sbjct: 12  VAVLFGGSSAEREVSMMSGTGVLEALRSRGVDAHAFDPSERDLVELKREGFARCFVVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++  + G+P    + +       
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASSVAMDKVMTKRIWQADGLPTPKYVRLAFDQQSR 131

Query: 121 QHLIS------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + ++        P ++KP + GSS+G+  ++    +   +  S+   +   +L E++++G
Sbjct: 132 EQIMVVPDVLGLPLIVKPPREGSSIGVTKVEGYSQMQDAVTLSA--KYDADVLCEEFIEG 189

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC V+G                   Y Y+ KY +    +  P+ +P D   E+QR+ 
Sbjct: 190 EEVTCAVLGQGLDARALPVVRIAAPEGAYDYQNKYFTDVVQYKCPSGLPADEEHEIQRIT 249

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+  +GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  + EL L 
Sbjct: 250 LAAYHTLGCRGWGRADVMIRASDRKPFLLEMNTSPGMTSHSLVPMSARAAGIPYEELCLR 309

Query: 292 MVEDASCL 299
           ++  AS  
Sbjct: 310 VLASASLD 317


>gi|289548161|ref|YP_003473149.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
 gi|289181778|gb|ADC89022.1| D-alanine/D-alanine ligase [Thermocrinis albus DSM 14484]
          Length = 288

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 100/293 (34%), Positives = 156/293 (53%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   AL   G +   +DV   +   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSYEREISLKTGEAILRALRQLGHEAVPLDVTEDLCQRLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQA+L+LL IPY  SG+LASAL+MDK  +K++++  G+PV   I V R     
Sbjct: 63  PYGEDGRVQAVLDLLGIPYVGSGVLASALAMDKDFTKKILAFHGIPVPRWIAVKRNAPFR 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +L   P V+KP   GSS+G+ V++K++ + L L +        + LIE+++ G ++T G
Sbjct: 123 WNL--FPAVVKPADQGSSIGLHVVEKEEDLTLALEEVWKV--SQKALIEEFIQGKDVTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D  L   EI         Y+ +                 + +++Q +A   H  +  
Sbjct: 179 ILKDKPLPPIEIR---PKKGVYDYESKYTKGMTEYVFVEDPSVVEKLQEIALKVHTLLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +SR DF         + LE+N  PGMT +S+FP     AG  F +++  ++
Sbjct: 236 KDMSRIDFRLS-DDGTPYVLEVNTIPGMTELSLFPMACNKAGIDFAQMVHILL 287


>gi|126665244|ref|ZP_01736227.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
 gi|126630614|gb|EBA01229.1| D-alanylalanine synthetase [Marinobacter sp. ELB17]
          Length = 342

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 155/297 (52%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+ER+VSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 34  VAVFMGGDSAERDVSLKSGQAVLSALLSAGVNAFGVDVQGCLLKTVEQPEFDRVFIALHG 93

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +QAIL    IP+T S ++ASAL+MDK+R+K V + CG+       +       
Sbjct: 94  RGGEDGTLQAILSQAGIPFTGSDVMASALAMDKLRTKYVFAGCGLATPKFRTMASAEDAN 153

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP + GSS+GI  +     +       ++      +L+E++++G E T
Sbjct: 154 SIAAELRMPLSVKPSREGSSIGICKVTSAGELVQA--WQAAAALDTSVLVEEWIEGPEFT 211

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    ++      Y Y+ KY + ++ + +P  +  D    +Q+LA  A + +
Sbjct: 212 VSLLQDRALPAIGLSTDHVF-YDYDAKYLADDTRYCIPCGLSADEELRLQQLALEAFRVV 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCR   R D + D    K + LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 271 GCRTWGRVDIMQDA-DGKFWLLEVNTVPGMTDHSLVPMSARAAGISFEELVVRILAD 326


>gi|68249689|ref|YP_248801.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|145630240|ref|ZP_01786022.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229846171|ref|ZP_04466283.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260581811|ref|ZP_05849607.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|81335882|sp|Q4QLF6|DDL_HAEI8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68057888|gb|AAX88141.1| D-alanine--D-alanine ligase [Haemophilus influenzae 86-028NP]
 gi|144984521|gb|EDJ91944.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|229811175|gb|EEP46892.1| D-alanine--D-alanine ligase [Haemophilus influenzae 7P49H1]
 gi|260095004|gb|EEW78896.1| D-alanylalanine synthetase [Haemophilus influenzae NT127]
 gi|309973393|gb|ADO96594.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2846]
          Length = 306

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDALGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|332288550|ref|YP_004419402.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
 gi|330431446|gb|AEC16505.1| D-alanine-D-alanine ligase [Gallibacterium anatis UMN179]
          Length = 311

 Score =  190 bits (483), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 169/304 (55%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+EREVSL+SG A   AL+D GF  V  ID        L        FN+LH
Sbjct: 11  IAVLLGGTSAEREVSLNSGAAVLKALQDEGFTDVHAIDPKEFPVEDLKKQGFQRVFNILH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L IPYT  G+++SAL+MDKMR+K +  + G+PV   +++ + T  
Sbjct: 71  GRGGEDGSLQGLLEQLGIPYTGCGVMSSALTMDKMRTKLLWKAVGLPVAEMVVITKETRS 130

Query: 120 SQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P ++KP   GSS+G+  +KK + +   +  +    H D +LIE+++ 
Sbjct: 131 QLDAQAVVAKLGLPLMVKPSLEGSSVGLTKVKKVEELAAAVDTAL--THDDTVLIEEWLA 188

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E +  V+G   L    +  P  +FY Y+ KY   ++ +  P+ +  +   E++ L   
Sbjct: 189 GQEFSVPVLGGKVLPSI-LIKPAGEFYDYDAKYLLDSTQYFCPSGLSEERENELRNLVKQ 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  +GCRG SR D + D    +   +E+N  PGMT  S+FP  A   GYSF +L++ ++
Sbjct: 248 AYDIVGCRGWSRIDVMTDAQ-GRFRLVEVNTNPGMTSHSLFPMAAKVVGYSFSQLVVKIL 306

Query: 294 EDAS 297
           E ++
Sbjct: 307 ELSA 310


>gi|152979584|ref|YP_001345213.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
 gi|171704373|sp|A6VQN1|DDL_ACTSZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|150841307|gb|ABR75278.1| D-alanine--D-alanine ligase [Actinobacillus succinogenes 130Z]
          Length = 307

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 166/302 (54%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG +SEREVSL+SG A   AL   G+    +D        L     +  FN+LHG
Sbjct: 9   IAVLLGGTASEREVSLNSGAAVLDALRSQGYDAHPVDPKDMPVADLKQQGFERVFNILHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG++Q +LE + +PYT  G++ SAL+MDKMR+K +    G+P+    +V +     
Sbjct: 69  RGGEDGVIQGVLEQIGLPYTGCGVMTSALTMDKMRTKMLWKGFGLPIADMEIVTKNTALS 128

Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP + GSS+G+  +     +   +    +    D +LIE+++ G
Sbjct: 129 LEPQAIVARLGLPLMVKPSREGSSVGLTKVDSADKLKSAV--DLALKFDDIVLIEEWLSG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+GD  L      VP+ +FY Y  KY S N+ ++ P  +  + + E++ L   A
Sbjct: 187 DELTVPVLGDEVLPAV-QIVPEGEFYDYNAKYISDNTRYICPMPMSDERWDELKNLVKRA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  GYSF +L+  ++E
Sbjct: 246 YEAVGCRGWSRIDVMTDSEGN-FRLIEVNTTPGMTSHSLFPKSAATVGYSFEKLVEKILE 304

Query: 295 DA 296
            +
Sbjct: 305 LS 306


>gi|172057823|ref|YP_001814283.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
 gi|171990344|gb|ACB61266.1| D-alanine--D-alanine ligase [Exiguobacterium sibiricum 255-15]
          Length = 315

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 117/306 (38%), Positives = 164/306 (53%), Gaps = 10/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK+  +ALE  G +V  +D        + +L+ + A   LHG
Sbjct: 3   VAVLFGGISGEREVSLNSGKSVINALESKGHEVVAVDFHPERAEEILNLQVEAAVIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116
            +GEDG VQA+LE+  IPYT SG+LASAL+MDK RSK      G+ +   +      +  
Sbjct: 63  KYGEDGRVQALLEMAGIPYTGSGVLASALAMDKARSKVHFEKAGIRIARDVLVERGDDIE 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               Q     P V+KP + GSS G+ +   +Q +   +    ++   D +LIEQ++ G E
Sbjct: 123 QKIKQWDAQFPCVVKPAQEGSSNGLTIAMDEQMLRQGI--ELAFQADDAVLIEQFIKGRE 180

Query: 177 LTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           +T  V    G          +PK++FY YE KY+   S H+ PA+      + +Q  A L
Sbjct: 181 VTVPVLGAKGQEKALPVIEIIPKNEFYDYESKYAIGGSEHICPAQFDEKTTQTLQEWAVL 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AHQ +GC G SR+DFL  P       LE N  PGMT  S+FP+ A   G  + EL+   +
Sbjct: 241 AHQVLGCAGYSRTDFLV-PDEGAPVILETNTLPGMTSTSLFPDGARAVGIDYPELVETFI 299

Query: 294 EDASCL 299
           E A   
Sbjct: 300 ELAITR 305


>gi|311280928|ref|YP_003943159.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308750123|gb|ADO49875.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 306

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L +AG     +D       +L       AF  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREAGVDAYAVDPRDEDITLLKSKGFKKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q +LEL  IPYT SG++ASA+SMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGLLELTGIPYTGSGVMASAISMDKLRSKLLWQGAGLPVAPWVALTRAQFSQ 124

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+   K  +S  LD   + ++ H D++LIE++
Sbjct: 125 GLSAEDSQRIAALGLPLIVKPSREGSSVGM--SKVSESRALDAALALAFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  V+G+  L       P   FY YE KY S  + +  P        +E++ L 
Sbjct: 183 LSGPEFTVAVVGEEILPSI-RIQPAGTFYDYEAKYLSDETKYFCPGCEDPQREEEMKALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D    +++ LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LKAWNILGCSGWGRIDVMQDE-DGQLYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           +++ A
Sbjct: 301 ILDLA 305


>gi|296132694|ref|YP_003639941.1| D-alanine/D-alanine ligase [Thermincola sp. JR]
 gi|296031272|gb|ADG82040.1| D-alanine/D-alanine ligase [Thermincola potens JR]
          Length = 365

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 154/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +AV+ GG S E EVSL+S  +   AL    +++  I                        
Sbjct: 6   VAVIFGGKSGEHEVSLASANSVLQALNKEKYEIIPIKISREGKWYILSSLNTFDSNIKCE 65

Query: 37  -----DVDRSVGLVLAHLKP----------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                D      + L   +P          D+   VLHG FGEDG +Q +LEL  IPY  
Sbjct: 66  AAILADPTGDNLVNLQEKEPGQIFFTRESVDVVLPVLHGTFGEDGTLQGLLELANIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKP 132
            G+ AS++ MDK   K + +   +P    +   R   +          +  +  P  +KP
Sbjct: 126 CGVAASSVGMDKAMMKAMFAQHNLPQGKYLTFLRKEWEKDQDPICDEIETALGYPVFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE- 191
              GSS+GI        +   +  +    +  ++++E+ ++G E+   V+G+   + +  
Sbjct: 186 ANLGSSVGISKAANRDELVKAMHLAC--LYDRKVVVEENINGREIEVAVLGNDEPEASIA 243

Query: 192 -IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP +DFY YE KY S  S   +PA +      EV++LA  A +AI   G+SR DF  
Sbjct: 244 GEIVPCNDFYDYEAKYISGTSELKIPAPLDDKTMNEVRKLAVKAFKAIDGAGLSRVDFFI 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              + ++   EIN  PG T +S++P++ A  G  + +LL  ++E A
Sbjct: 304 KKDTGEILINEINTLPGFTEISMYPKLWAATGLPYDKLLDRLIELA 349


>gi|328675328|gb|AEB28003.1| D-alanine--D-alanine ligase [Francisella cf. novicida 3523]
          Length = 296

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 156/297 (52%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGLDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+L I +T S + +S ++MDKM SK++     +P           + 
Sbjct: 66  GEDGENGRVSALLEMLGIKHTSSSMKSSVITMDKMISKEIWMHHRMPTPM-AKFLTAKLF 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTENSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|124265657|ref|YP_001019661.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
 gi|190359164|sp|A2SCY7|DDL_METPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124258432|gb|ABM93426.1| D-alanine--D-alanine ligase [Methylibium petroleiphilum PM1]
          Length = 319

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 106/308 (34%), Positives = 163/308 (52%), Gaps = 11/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER++SL SG     AL+DAG      D      + L        F  LHG
Sbjct: 13  VAVLMGGTSAERDISLMSGGGVLKALQDAGVDAHAFDPKDHELVELRRQGFQRCFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K+V  + G+P    + +       
Sbjct: 73  RHGEDGTVQGALELLRIPYTGSGVMASAIAMDKIMTKRVWLAEGLPTPRYVRLAPDEQTP 132

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P ++KP + GSS+G+  +     +   +  S+   H   +L E+++DG
Sbjct: 133 ERVRGVPDDLGLPLIVKPPREGSSIGVTKVLGYSQMQDAVALSA--RHDPDVLCEEFIDG 190

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC V+G+ +          VP    Y Y+ KY +    ++ P+ +P D   E+QR+ 
Sbjct: 191 AEVTCPVLGEGANARALPVIRIVPPEAGYDYQNKYFTDEVKYLCPSGLPADEEAEIQRIV 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GCRG  R+D +     RK F LE+N  PGMT  S+ P  A  AG  + +L L 
Sbjct: 251 LAAYRALGCRGWGRADLMIRASDRKPFLLEMNTSPGMTGHSLVPMSAKAAGLGYEQLCLH 310

Query: 292 MVEDASCL 299
           +++ A+  
Sbjct: 311 ILQGAALD 318


>gi|169831401|ref|YP_001717383.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
 gi|229485966|sp|B1I3W6|DDL_DESAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169638245|gb|ACA59751.1| D-alanine--D-alanine ligase [Candidatus Desulforudis audaxviator
           MP104C]
          Length = 306

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 115/302 (38%), Positives = 179/302 (59%), Gaps = 9/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+S+EREVSL SG+A  +ALE  G++V  IDV+R V   +     +LAF  LHG
Sbjct: 5   IGVLMGGLSAEREVSLRSGRAVCAALESRGYEVVPIDVNRDVARTVRETGIELAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LE+L IPYT SG+LASAL+MDK+ +K++++  G+PV     +     DS
Sbjct: 65  PLGEDGAVQGLLEVLGIPYTGSGVLASALAMDKIATKKILAHAGLPVPEYRELEAGDADS 124

Query: 121 QH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P V+K    GSS+G+ ++++++ +    +  +    G ++L+E+++ G E
Sbjct: 125 ARAVVAELGLPVVVKAPTQGSSIGVYIVEREEDL-EARITDAVAYGGTRVLVEKFIAGPE 183

Query: 177 LT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           LT       +  +      V  +  Y YE KY+   S H++P ++P ++ + V  LA  A
Sbjct: 184 LTAAVLGNREPRVLPLIEIVSATGKYDYESKYTPGLSDHLIPPRVPREVQERVSDLALRA 243

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GCRG +R D +      + F LEIN  PG+T VS+FP+ A  AG SF +L+  +V 
Sbjct: 244 YRALGCRGFARVDLIV--SGNEAFILEINTIPGLTDVSLFPDAARAAGMSFPDLVEHLVR 301

Query: 295 DA 296
            A
Sbjct: 302 LA 303


>gi|238021217|ref|ZP_04601643.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
 gi|237868197|gb|EEP69203.1| hypothetical protein GCWU000324_01115 [Kingella oralis ATCC 51147]
          Length = 309

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 162/299 (54%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL+SGKA  +AL+  G      D   +    L       AFN+LHG
Sbjct: 10  IAVLMGGFSSEREISLASGKAILAALQSKGIDAHPFDPAETNLAELKTQGFQAAFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LE L IPYT  G+LASAL MDK R K +  + G+P+    +++  +  +
Sbjct: 70  TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWQALGLPIPAFAVLHDDSDFT 129

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  IKP   GSS+G+  + +   +     Q    N   ++L EQ++ G E T
Sbjct: 130 AVEQQLGLPLFIKPAAEGSSVGVHKVCQAGELAQIYRQLRRENLHGEILAEQFMSGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV+   +L      +P++DFY +E KY   ++ ++ P+ +  +  + +Q LA  A  AI
Sbjct: 190 CGVLNQQALPSI-RIIPQNDFYDWEAKYQRNDTVYLCPSDLSAEDEQLMQSLARQAFAAI 248

Query: 239 GCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G      R DFL D    K++ LE+N  PGMT  S+ P+ A   G  F +L + +++ A
Sbjct: 249 GGGNTCGRVDFLKDAA-GKIYILEVNTLPGMTGHSLIPKAAQQKGIGFADLCVAILQTA 306


>gi|161504748|ref|YP_001571860.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160866095|gb|ABX22718.1| hypothetical protein SARI_02871 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 306

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A  + L + G     +D        L  +    AF  LHG
Sbjct: 5   IAVLLGGASAEREVSLESGAAVLAGLREGGIDAHPVDPKEVDVAQLKAMGFQKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+ V P   + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLLVAPWFALTRAGFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  + ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPGREGSSVGMTKVVEENALQGAL--ALAFQHDDEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAILGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQEAALQLLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC+G  R D + +    + + LE N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 242 LQAWKALGCKGWGRIDVMLN-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|300702964|ref|YP_003744566.1| d-alanine-d-alanine ligase b, affects cell division [Ralstonia
           solanacearum CFBP2957]
 gi|299070627|emb|CBJ41922.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CFBP2957]
          Length = 331

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  PA IP D+   VQ L   A+
Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +   
Sbjct: 258 RGLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|289209358|ref|YP_003461424.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
 gi|288944989|gb|ADC72688.1| D-alanine/D-alanine ligase [Thioalkalivibrio sp. K90mix]
          Length = 313

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 97/298 (32%), Positives = 143/298 (47%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER++SL SG A  +AL   G     +D+ R     +A    D  F  LHG
Sbjct: 12  VAVLMGGWSGERDISLKSGNAVLAALRRQGVDAHAVDLTRETARCMALEGYDRVFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTM 118
             GEDG +Q  L++  +PYT +G+L SAL MDK+  K++ +   +P  P           
Sbjct: 72  ECGEDGTLQGCLDMGGMPYTGTGVLGSALGMDKLACKRLWAGTNLPSAPYRLLTPGFDPE 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP +GGSSLGI  + +   +P     +       Q+  EQ++ G E T
Sbjct: 132 AVADALGLPLIVKPARGGSSLGITRVDRVADLPAAFEAARVQP--GQVFAEQWITGREFT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+G+  L V EI      +  +    +        P  +      E+Q LA  A  A+
Sbjct: 190 VAVLGNEPLPVIEIRAASGFYDYHAKYEADDTGYLCPPPDLSRSAQLELQSLAIAAFAAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              G  R D L D    + F +E+N  PGMT  S+ P+ AA AG  F EL L +++ +
Sbjct: 250 EGCGWGRVDILQDEH-GENFLIEVNTIPGMTGHSLVPKAAAQAGIDFDELCLRILDSS 306


>gi|56707350|ref|YP_169246.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110669820|ref|YP_666377.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115315497|ref|YP_764220.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156503383|ref|YP_001429448.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|290953356|ref|ZP_06557977.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295313403|ref|ZP_06804010.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica URFT1]
 gi|81598013|sp|Q5NI96|DDL_FRATT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122324519|sp|Q0BK01|DDL_FRATO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123169653|sp|Q14JP9|DDL_FRAT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359132|sp|A7NET9|DDL_FRATF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56603842|emb|CAG44818.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|110320153|emb|CAL08201.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115130396|gb|ABI83583.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|156253986|gb|ABU62492.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|282158482|gb|ADA77873.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 296

 Score =  190 bits (482), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|253997366|ref|YP_003049430.1| D-alanine--D-alanine ligase [Methylotenera mobilis JLW8]
 gi|253984045|gb|ACT48903.1| D-alanine/D-alanine ligase [Methylotenera mobilis JLW8]
          Length = 301

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 149/298 (50%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S EREVSL SG A  +AL+  G      D        L     D A   LHG
Sbjct: 7   VAVLLGGKSGEREVSLKSGTAVLAALQRQGVDAHAFDPATRPLHDLES--FDTAMISLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            FGEDG +Q  LELL IPYT SG++ASA+ MDK R+K + S+ GV       +  +    
Sbjct: 65  RFGEDGAMQGALELLGIPYTGSGVMASAIGMDKWRTKMMWSAAGVSTPAFELVSADSDFE 124

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P  +KP   GSS+GI  +K+   +      +      D L+I +   G    
Sbjct: 125 AIEQRLGLPLFVKPANEGSSIGISKVKQTGGLKAAYELA---AKSDPLVIAEQFVGGGEY 181

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +           VPK++FY +E KY   ++ +  P  +  +   ++Q+ A LA   I
Sbjct: 182 TVGILGDQALPIVRIVPKNEFYDFEAKYLRDDTEYRCPCGLSAEKEAQIQQEALLAFNTI 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+G  R DFL D    K ++LE+N  PGMT  S+ P  A  AG SF EL++ ++  A
Sbjct: 242 GCQGWGRVDFLMDEA-GKHYFLEVNTSPGMTDHSLVPMAAKAAGISFDELVVSVLRLA 298


>gi|73542661|ref|YP_297181.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
 gi|123624027|sp|Q46WZ6|DDL_RALEJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72120074|gb|AAZ62337.1| D-alanine--D-alanine ligase [Ralstonia eutropha JMP134]
          Length = 327

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 158/304 (51%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLYGGRSAEREISLMSGSGVLAALQSRGVDAHGFDPATQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++  +  +      ++   T   
Sbjct: 77  RYGEDGTMQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHDLSTPRFAMLYADTDFD 136

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +        +    + ++ E ++DG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLSKVTDASQMREAF--EKAAALDNDVIAETFIDGAELT 194

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+ +          V     Y Y+ KY + ++ ++ P+ +  ++ +EVQ+LA  A+
Sbjct: 195 CPLVGEGATAEALPVIRIVAPDSNYDYQNKYFTDDTQYLCPSGLSAEVEREVQQLAVQAY 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +      K F LE+N  PGMT  S+ P  A  AG S+ + ++ +V  
Sbjct: 255 RVLGCRGWARADVML-RADGKPFLLEMNTSPGMTGHSLVPMAARAAGISYEDFVMQVVAA 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 ATLD 317


>gi|116621914|ref|YP_824070.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
 gi|122939638|sp|Q023Q5|DDL_SOLUE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116225076|gb|ABJ83785.1| D-alanine--D-alanine ligase [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 325

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 96/309 (31%), Positives = 167/309 (54%), Gaps = 15/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VL----AHLKPD 52
           +AV+ GG + E EVS+ S K+  + L+   ++  +  +D++       +L    AH   D
Sbjct: 5   VAVIYGGRTGEHEVSVRSAKSILAGLDCEKYETIEYFIDQNGKWSPGPILPEPGAHANID 64

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
           + F VLHG FGEDG VQ +LEL ++PY  +G+L SA+SMDK   K+V     +P+   + 
Sbjct: 65  VVFPVLHGTFGEDGTVQGLLELADLPYVGAGVLGSAVSMDKEMMKRVCKERMLPIVDYVT 124

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +D+   +  P  +KP   GSS+GI     +Q +      +    +  ++++E
Sbjct: 125 VTRQTPSIVDACRRLPFPMFVKPANLGSSVGISKAHDEQELEAAFSLAK--QYDRKIIVE 182

Query: 170 QYVDGIELTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + ++G EL C V+G+ +   +     +P  +FY YE KY    +   +PA +P +   E+
Sbjct: 183 RGIEGRELECSVLGNEAPMASLPCEILPSREFYDYEDKYLLDMARTQVPADLPGERTDEI 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +RLA   ++A+ C G++R DF  +  + +++  EIN  PG T +S++P+M  ++G  F  
Sbjct: 243 RRLAVECYRAVECEGMARVDFFLEHGTNRLYINEINTIPGFTSISMYPKMWEHSGIPFCT 302

Query: 288 LLLWMVEDA 296
           LL  ++E A
Sbjct: 303 LLDQLIEFA 311


>gi|291288101|ref|YP_003504917.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290885261|gb|ADD68961.1| D-alanine/D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 298

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 99/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL SG+A   +L   G+K   ID+DR V   ++    D+ F  LHG
Sbjct: 6   VAVLYGGMSAEREVSLRSGQAAYDSLVRLGYKTVLIDMDRDVAQKISEAGADVCFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L+++ +PYT S   A+ ++ DK+ SK+     GV     I +N      
Sbjct: 66  TYGEDGRVQGMLDIIGMPYTGSSYQANMVAFDKLLSKERFIKGGVTTPDYIELNAPKKGM 125

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                   VIKP + GSS+GI +++ ++     L    ++ +  ++++E+ + G+ELT  
Sbjct: 126 PFEC---CVIKPARQGSSVGIHIVQNEEEYFSKL--EDAFKYDSKVIVEECIKGVELTVS 180

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V     PK   Y YE KY+   + +V    +     + V+  A  A   +GC
Sbjct: 181 ILDGETLPVIC-IRPKKGVYDYESKYTKGMTEYVFDTGLSASETECVENAAMKAFDVLGC 239

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G  R+D ++D   R  + LE+N  PGMT  S+ P+ A  AG SF  ++  M+  A   +
Sbjct: 240 SGYGRADIMYD--GRTPYVLEVNTLPGMTETSLLPKAANKAGMSFDNMVEKMLLGAFKDK 297


>gi|121998867|ref|YP_001003654.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
 gi|190359139|sp|A1WYU0|DDL_HALHL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121590272|gb|ABM62852.1| D-alanine--D-alanine ligase [Halorhodospira halophila SL1]
          Length = 304

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 153/296 (51%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER++SL SG A  +AL+  G+     D        L     D+ F  LHG
Sbjct: 13  VAVLMGGTSAERDISLRSGGAILAALQRCGYDAEAYDPRDRALEGLR--GYDVVFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L+LL IPYT SG+L SAL MDK R K++    G+P     L+       
Sbjct: 71  RGGEDGTVQGLLDLLGIPYTGSGVLGSALGMDKWRCKRLWQGSGLPTPAGQLLTGDRPVL 130

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP + GSSLG+  ++  + +      ++   + D +L E +V+G E T  
Sbjct: 131 DEGVGYPVIVKPAREGSSLGMSRVEGPEELAEAYRVAA--AYDDTVLAEAWVEGEEYTVA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L    +  P +  + Y  KY + ++ H  P+ +  +   E+  L   A  A G 
Sbjct: 189 LLGDQALPSIRLETPHAF-FDYAAKYQAEDTGHHCPSGLGPEEEAELGALCREAFIASGG 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  R D + D    + + LE+N  PGMT  S+ P  AA AG  F EL+  ++ +A
Sbjct: 248 NGWGRVDVMRDT-GGRWWLLEVNTIPGMTDHSLVPIAAAQAGIGFDELVARILGEA 302


>gi|134302707|ref|YP_001122675.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|190359134|sp|A4J053|DDL_FRATW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134050484|gb|ABO47555.1| D-alanine--D-alanine ligase [Francisella tularensis subsp.
           tularensis WY96-3418]
          Length = 296

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHYRMPTPM-AKFLTDKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|312898959|ref|ZP_07758347.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
 gi|310620121|gb|EFQ03693.1| D-ala D-ala ligase [Megasphaera micronuciformis F0359]
          Length = 312

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 100/307 (32%), Positives = 162/307 (52%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           +AV++GG S+E  VS +SGK  A+AL   G+     + V       L   + D+ FN LH
Sbjct: 9   IAVIVGGPSTEAAVSRNSGKNVAAALRAKGYDPIITELVPEEWARTLKEGQFDIVFNALH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-- 117
           G +GEDG++Q   E++ IPYT  G++ASA+ M+K+ SK      G+   P          
Sbjct: 69  GRYGEDGVLQGTCEMMNIPYTGPGVMASAVGMNKVVSKSAFVGAGISTAPFRYYFEEQGV 128

Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +   + S P VIK    GSS+G ++++K   +   L ++    +G  ++ E ++ 
Sbjct: 129 DSIAEEILQVFSLPVVIKSAAQGSSIGTVIVRKKDDLKSALSEAF--AYGKSIVAEAFLS 186

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM + +  V    + K+  Y YE KY+   S H+ PA+IP ++ KE+Q L+  
Sbjct: 187 GREFTVAVMDELAFPVI-EIISKTGRYDYESKYTPGLSEHICPAQIPPELTKELQDLSLA 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   C+G++R D + D  + K + LEIN  PGMT  S+ P+ +   G  F +L   ++
Sbjct: 246 VFRLFHCKGVARVDLMTDE-NGKAYVLEINTVPGMTETSLVPDASRAMGMPFEDLCERIL 304

Query: 294 EDASCLR 300
           E+AS  +
Sbjct: 305 EEASTGK 311


>gi|54113087|gb|AAV29177.1| NT02FT0155 [synthetic construct]
          Length = 296

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|301630393|ref|XP_002944306.1| PREDICTED: d-alanine--D-alanine ligase-like [Xenopus (Silurana)
           tropicalis]
          Length = 334

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG     AL   G      D   +    L        F  LHG
Sbjct: 20  VAVLMGGDSSEREVSLMSGGGVLQALRARGVDAHAFDPAHASLADLKTHGYTRCFIALHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL IPYT SG++AS+++MDK+ +K++    G+P      +     T 
Sbjct: 80  RHGEDGTVQGALELLGIPYTGSGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAAETA 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  +            ++   H  ++L EQ++DG E T
Sbjct: 140 QALAALGAPMIVKPAREGSTIGLTKVTSPGQCQQAYRLAA--QHDPEVLCEQFIDGDETT 197

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G  +          V     Y Y+ KY +  + +  P+ +P    + +QRL   A+
Sbjct: 198 CPVLGQGASATALPVIRIVAPEGNYDYQNKYFTDVTQYHCPSGLPEAEERAIQRLVERAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG S+  L L ++  
Sbjct: 258 RTLGCRGWARADIMVRASDRQPFLLEINTSPGMTGHSLVPMSARAAGTSYEALCLRILAS 317

Query: 296 ASCL 299
           AS  
Sbjct: 318 ASLD 321


>gi|163782057|ref|ZP_02177056.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882589|gb|EDP76094.1| D-alanine:D-alanine ligase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 288

 Score =  190 bits (481), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 162/293 (55%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSERE+SL +G+A + AL+D G +V ++D+   +   L  +KPD  F  LHG
Sbjct: 3   IVVLMGGKSSEREISLKTGRAVSRALKDMGHEVHELDLTPEIACELLRIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L++L IPYT +G+L SA++MDK  +K+++SS G+P  P   V R     
Sbjct: 63  PYGEDGRIQGLLDILGIPYTGAGVLGSAVAMDKEITKRLLSSEGIPTPPWRCVRRGEEPV 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P V+KP   GSS+G+ V+  +  +   + +       D++L+E +++G ++T  
Sbjct: 123 W--RDFPAVVKPADQGSSVGLSVVHSEAELGKAVKELFELT--DKVLVESFIEGRDMTVA 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L V EI   K     Y+ +                ++ + +Q  A   ++ +G 
Sbjct: 179 ILKGKALPVIEI---KPIKGIYDYESKYTRGKTEYTFLEEGELSERLQDTALRVNELLGL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ++R DF  D      + LE+N  PGMT +S+FP     AG SF+E+L  ++
Sbjct: 236 KDMARVDFRVDGEGN-PYVLEVNTVPGMTELSLFPMACEKAGMSFKEMLSIIL 287


>gi|254455880|ref|ZP_05069309.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082882|gb|EDZ60308.1| D-alanine--D-alanine ligase B [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 304

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 167/304 (54%), Gaps = 12/304 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GGIS ER +SL +G   A  L+  G+++   + D+S+   +   KP + FN LHG F
Sbjct: 7   ILSGGISKERLISLDTGFQVAKELKKHGYEIRISEPDKSLEKKIKEFKPSVIFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--- 119
           GEDG +Q ILE  +IPYTHSG++AS+++MDK  SK++     +     I  +   ++   
Sbjct: 67  GEDGYIQTILEQFKIPYTHSGVIASSIAMDKEISKKIFKKNKIITPKHIKYSFDKINLEL 126

Query: 120 ---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P V+KP+  GSS+ + +  K                  Q++IE+++ G E
Sbjct: 127 VNKINKELKFPVVVKPINEGSSVNVFICTK----KNINQILKKMKSYKQVMIEEFIGGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   +MG+  L   E+   +  +       ++  + H++P  +  +   EV  +A  AH+
Sbjct: 183 IQVAIMGNKKLGAIELKPKRKFYDYQAKYNTNAKTQHIIPVDLDKNKLNEVLNIALKAHK 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGCRG++RSDF F     K + LEIN QPGMT +S+ PE+AAY G SF +L+ W+++DA
Sbjct: 243 KIGCRGVTRSDFKF--YKNKFYLLEINTQPGMTKLSLVPEIAAYQGISFYKLINWILKDA 300

Query: 297 SCLR 300
           S  R
Sbjct: 301 STKR 304


>gi|309751214|gb|ADO81198.1| D-alanine--D-alanine ligase [Haemophilus influenzae R2866]
          Length = 306

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|145627890|ref|ZP_01783691.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145639340|ref|ZP_01794946.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
 gi|144979665|gb|EDJ89324.1| D-alanylalanine synthetase [Haemophilus influenzae 22.1-21]
 gi|145271643|gb|EDK11554.1| D-alanylalanine synthetase [Haemophilus influenzae PittII]
          Length = 330

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 32  IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 91

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 92  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 151

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 152 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 209

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 210 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 268

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 269 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 327

Query: 295 DA 296
            +
Sbjct: 328 LS 329


>gi|300690343|ref|YP_003751338.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
 gi|299077403|emb|CBJ50028.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum PSI07]
          Length = 331

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 152/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  PA IP D+   VQ L   A+
Sbjct: 198 CAVIGEGESATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +   
Sbjct: 258 RGLGCRGWGRADIMLREHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|298243533|ref|ZP_06967340.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297556587|gb|EFH90451.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 85/353 (24%), Positives = 154/353 (43%), Gaps = 57/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL+S K+  + +    ++V  I ++++   +L              
Sbjct: 14  IGLIYGGRSGEHEVSLNSAKSVIANINSDKYEVVPIAINKTGKWLLGVEPTRMIEAEKST 73

Query: 47  ----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F V+HG  GEDG +Q +L
Sbjct: 74  QAEAELEQSTAVTFTGDPNLRRLIPVNGSQEQLENQGAIDVIFPVMHGTTGEDGALQGML 133

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           ++ ++PY   G+L SAL MDK + K +    G+PV   ++  R   +          +  
Sbjct: 134 DMADVPYVGCGVLGSALGMDKEKMKMIFERAGLPVGEYLVYRRNQWERDPESILNAIEEQ 193

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP+  GSS+GI        +   +  ++ ++    +         E       
Sbjct: 194 LNYPCFVKPVNLGSSVGINKAHDRAELVHAINVAAEYDRKVIIERNINCREFECAVLGND 253

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  + V    VP ++FY Y+ KY    S  + PA+I  ++ +E++R A +A  ++   G+
Sbjct: 254 EPIVSVMGEIVPSNEFYDYKAKYVDGKSQVITPAEISQELSQEMRRQALIAFTSLDLSGL 313

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF  +  + KV+  E+N  PG T VS++P +   +G  + EL+  +VE A
Sbjct: 314 SRIDFFLEKETNKVYINEVNTLPGFTQVSMYPMLWEASGIPYPELIDRLVELA 366


>gi|294670617|ref|ZP_06735495.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291307656|gb|EFE48899.1| hypothetical protein NEIELOOT_02341 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 308

 Score =  189 bits (480), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 159/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL+SG+A   AL   G      D   +    L     D AFN+LHG
Sbjct: 12  VAVLMGGFSSEREVSLASGQAVLEALRSKGVDAHAFDPKETPLGELKTQGFDCAFNILHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LE L I YT  G+LAS++ MDK RSK +    G+PV    ++   +   
Sbjct: 72  VFGEDGTVQGALEALGIRYTGCGVLASSIGMDKYRSKLLWKGLGLPVPDYAVLRDDSDFD 131

Query: 121 QHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP   GSS+G++ +K+   +     +   +    +++ E ++ G E T
Sbjct: 132 AVERQLGLPMFVKPANEGSSVGVVKVKEAGRLKEVYHELKQFR--GEIIAEAFIGGGEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CG++   +L      +P ++FY  E KY   ++ ++ P+ +  +  + ++ L   A  AI
Sbjct: 190 CGILNGRALPSV-RIIPATEFYDKEAKYDRDDTVYLCPSDLSEEDERLMRDLTVRAFHAI 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D  S +++ LE N  PGMT  S+ P+ AA  G+ F +L + +++ A
Sbjct: 249 GGRGWGRIDFLKDE-SGRLYLLEANTLPGMTSHSLVPKAAAQQGWDFAQLCVEILKTA 305


>gi|94501894|ref|ZP_01308404.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
 gi|94425947|gb|EAT10945.1| D-alanylalanine synthetase [Oceanobacter sp. RED65]
          Length = 301

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 99/297 (33%), Positives = 153/297 (51%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+EREVSL SG+A   AL        +ID  R++   LA  K D AF  LHG
Sbjct: 7   VAVILGGNSAEREVSLRSGEAIYQALIAQDIDAVKIDSARNLIGQLAEQKVDRAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE   IPYT SG+ ASA+ MDK RSK +     +P      +       
Sbjct: 67  VGGEDGTIQGLLEFYGIPYTGSGVKASAICMDKWRSKLIWQGLSLPTPKFTLVESLSDLK 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + +  P ++KP   GSS+GI  +  +  +    + +     G  +L EQ+V+G+E T
Sbjct: 127 EFANQVGYPLMVKPSLEGSSIGISKVASEAQLERAFVDAKQT--GSSVLAEQFVEGLEFT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++   +L   ++       Y Y  KY   ++ +++P  +  +    +Q LA  A+Q++
Sbjct: 185 VGILDGKALPAIQLKAANDF-YDYNAKYLQNDTQYIVPCGLESEKEACLQSLALQAYQSL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            C G  R D + D      + +E+N  PGMT  S+ P  A   G SF  L+L ++E 
Sbjct: 244 DCHGWGRVDVMQDAK-GDFWLIEVNTIPGMTDHSLVPMAAKARGMSFEALVLNILET 299


>gi|288819097|ref|YP_003433445.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|288788497|dbj|BAI70244.1| D-alanine:D-alanine ligase [Hydrogenobacter thermophilus TK-6]
 gi|308752680|gb|ADO46163.1| D-alanine/D-alanine ligase [Hydrogenobacter thermophilus TK-6]
          Length = 288

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 98/293 (33%), Positives = 159/293 (54%), Gaps = 8/293 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S ERE+SL +G+A   A+ + G +   +D++ ++   L  +KPD  F  LHG
Sbjct: 3   VVVLMGGRSEEREISLKTGEAVLRAIRELGHEAIPLDLEENLCQKLLEIKPDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPYT SG+L S L+MDK  +K++++   +PV   I V R     
Sbjct: 63  TYGEDGRVQGLLDILGIPYTGSGVLGSCLAMDKDITKKILTFHRIPVPAGICVRRGETFE 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H  S P V+KP   GSS+G+ ++K    +   + +  S +H  ++LIE+Y+ G ++T G
Sbjct: 123 WH--SFPAVVKPADQGSSVGLFLVKDHDELENAVREVLSISH--KVLIEEYIIGRDITVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L   EI   K     Y+ +                 + K++Q +A + H+ +  
Sbjct: 179 ILKGEALPPVEI---KPKKGIYDYESKYTKGMSDYVFLEDEKLIKKLQDIALMVHKYLEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + ISR DF         + LE N  PGMT +S+FP M    G  F+E++  ++
Sbjct: 236 KDISRVDFRLSE-DGVAYVLEANTIPGMTELSLFPMMCKKKGIEFKEMIHMLL 287


>gi|209545283|ref|YP_002277512.1| D-alanine--D-alanine ligase [Gluconacetobacter diazotrophicus PAl
           5]
 gi|209532960|gb|ACI52897.1| D-alanine/D-alanine ligase [Gluconacetobacter diazotrophicus PAl 5]
          Length = 315

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 7   ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 66

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 67  LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  +    +G   L+E+++ G EL
Sbjct: 127 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAIADAW--TYGPLALVEEFIPGREL 184

Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +    D+T       +FY Y  KY +  S H+LPA+I  D + +   LA  A
Sbjct: 185 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 244

Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L 
Sbjct: 245 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 304

Query: 290 LWMVEDASCL 299
            WMVE A+C 
Sbjct: 305 RWMVEHAACR 314


>gi|145633130|ref|ZP_01788862.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145635591|ref|ZP_01791289.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229844905|ref|ZP_04465043.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
 gi|144986356|gb|EDJ92935.1| D-alanylalanine synthetase [Haemophilus influenzae 3655]
 gi|145267153|gb|EDK07159.1| D-alanylalanine synthetase [Haemophilus influenzae PittAA]
 gi|229812286|gb|EEP47977.1| D-alanine--D-alanine ligase [Haemophilus influenzae 6P18H1]
          Length = 306

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 111/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVSVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|205351469|ref|YP_002225270.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|205271250|emb|CAR36038.1| D-alanine:D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|326626496|gb|EGE32839.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 306

 Score =  189 bits (480), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 108/305 (35%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S S+ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLSFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D    + + LE N  PGMT  S+    A  AG SF +L++ 
Sbjct: 242 LQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVTMAARQAGMSFSQLVVR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|296134866|ref|YP_003642108.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
 gi|295794988|gb|ADG29778.1| D-alanine/D-alanine ligase [Thiomonas intermedia K12]
          Length = 342

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++     +       +       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++      ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAA--RFDSRVLVEQFIEGDEVT 192

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G             V     Y YE KY S ++ ++ P+++P D    +Q L   ++
Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLHSY 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L ++  
Sbjct: 253 RTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILSM 312

Query: 296 ASCL 299
           A+  
Sbjct: 313 AALD 316


>gi|162148963|ref|YP_001603424.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787540|emb|CAP57136.1| UDP-N-acetylenolpyruvoylglucosamine reductase [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 645

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 123/310 (39%), Positives = 181/310 (58%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           + VL GG+S+ER VSLSSG   ++AL + GF V  +D    +G ++A L   +PD+ FN 
Sbjct: 337 ITVLTGGLSAERTVSLSSGAGISAALREEGFDVRVLDAGPDLGAIVADLTAHRPDVVFNA 396

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + IPYTHSG+ ASA++MDK  ++    + G+PV    ++    
Sbjct: 397 LHGRFGEDGSIQGVLDWMNIPYTHSGVRASAMAMDKAAARSAFRAAGLPVAQGGVIAIAD 456

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  PYVIKPL  GSS+G+ +++   +    +  +    +G   L+E+++ G EL
Sbjct: 457 FPAADPLPAPYVIKPLNEGSSVGVEIVRPGTNRRAAIADAW--TYGPLALVEEFIPGREL 514

Query: 178 TCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +    D+T       +FY Y  KY +  S H+LPA+I  D + +   LA  A
Sbjct: 515 TVGVMGDRALTVTDITPNPDAGHEFYDYAAKYQNGGSRHILPARIHPDAFAQALDLAVAA 574

Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GC G SR+DF +D         ++  LE+N QPGMTP S+ PE A   G  +  L 
Sbjct: 575 HRALGCAGASRTDFRYDDTQCGDGPGRLVILEVNTQPGMTPTSLLPEQAGACGIPYGALC 634

Query: 290 LWMVEDASCL 299
            WMVE A+C 
Sbjct: 635 RWMVEHAACR 644


>gi|89257158|ref|YP_514520.1| D-alanyl-alanine synthetase A [Francisella tularensis subsp.
           holarctica LVS]
 gi|122500155|sp|Q2A182|DDL_FRATH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89144989|emb|CAJ80349.1| D-alanine--D-alanine ligase B [Francisella tularensis subsp.
           holarctica LVS]
          Length = 296

 Score =  189 bits (479), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 6   IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 66  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 125 AEDEISFPAAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 181

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 182 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 239

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 240 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 295


>gi|325578819|ref|ZP_08148866.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
 gi|325159643|gb|EGC71775.1| D-alanine-D-alanine ligase B [Haemophilus parainfluenzae ATCC
           33392]
          Length = 316

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 169/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 18  IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +     
Sbjct: 78  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENAHE 137

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 138 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--DYALKFDNTILIEEWLAG 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G   L      VP+ +FY Y+ KY S N+ +  PA +  +  +E+ +L   A
Sbjct: 196 DELTVPVLGGEVLPAV-RIVPEGEFYDYDAKYISDNTQYFCPAGLSAEREQELAKLVKRA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ A+  G SF +L++ ++E
Sbjct: 255 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 313

Query: 295 DAS 297
            ++
Sbjct: 314 LSA 316


>gi|212638041|ref|YP_002314561.1| D-alanyl-alanine synthetase A [Anoxybacillus flavithermus WK1]
 gi|212559521|gb|ACJ32576.1| D-alanyl-D-alanine ligase [Anoxybacillus flavithermus WK1]
          Length = 355

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 149/331 (45%), Gaps = 39/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S E +VSL + ++  +A+    F V  I +      +                
Sbjct: 14  GILYGGKSPEHKVSLQTARSVINAINKEKFTVVPIYITTDGQWLRGEAIEGEVQHVNELA 73

Query: 46  ---------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                    L     D+ F +LHG  GEDG VQ +LELL +PY  +G+LASA+ MDK+  
Sbjct: 74  FQQGLPALALIANGIDVIFPLLHGPNGEDGTVQGMLELLNVPYVGNGVLASAVGMDKVVM 133

Query: 97  KQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           KQ+ +  G+     +   +              +  I  P  +KP   GSS+GI   K  
Sbjct: 134 KQLFAQAGLKQARYVFFLKNEWEGQKENVYETVEQEIGYPCFVKPANAGSSVGISKCKNR 193

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELK 205
           + +     ++    +  ++++E+ + G E+             V    VPK +FY YE K
Sbjct: 194 EQLQTAFQEAF--RYDRKVIVEEAIIGREVEIGVIGNDKPICSVVGEIVPKKEFYDYEAK 251

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y   N+   +PA +    Y+ ++++A  A + +   G+ R+DF       +V+  E+N  
Sbjct: 252 YVDGNTELFIPANVTDKEYETIKQMALAAFKVLDLAGLVRADFFLTA-DGEVYINEVNTM 310

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG TP S+FP +  + G  + EL+  +++ A
Sbjct: 311 PGFTPFSMFPLLWKHTGIPYEELIERLIQLA 341


>gi|77166309|ref|YP_344834.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|254435287|ref|ZP_05048794.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
 gi|123593332|sp|Q3J792|DDL_NITOC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|76884623|gb|ABA59304.1| D-alanine--D-alanine ligase [Nitrosococcus oceani ATCC 19707]
 gi|207088398|gb|EDZ65670.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Nitrosococcus oceani AFC27]
          Length = 316

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 101/302 (33%), Positives = 160/302 (52%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG S+ERE+SL SG A   +L   G +   IDVD+ V   L+  +   AF  LHG
Sbjct: 13  VVVLMGGYSAEREISLKSGTAVLQSLLRQGIEAHGIDVDKGVLTQLSKGQFTRAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG++Q +LE L +PYT SG+L SAL+MDK+RSK++     +P     ++ R T   
Sbjct: 73  RGGEDGVIQGVLETLNLPYTGSGVLGSALTMDKLRSKRLWRGMDLPTADFSVLTRDTNPA 132

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG++ ++  +++     ++        +  E+++ G E T
Sbjct: 133 LIAADLGLPLIVKPAREGSSLGMMKVESIEALQSAYREAVI--FDTAVFAERWLPGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D  L +  +  P+   Y +E KY +  + +  P  +     +++Q LA  A QA+
Sbjct: 191 AAILADRVLPLIRLETPRVF-YDFEAKYHANTTRYFCPCGLSEKQEQDLQALALEAFQAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G  R D   D  +   + LEIN  PGMT  S+ P  A  AG  F E++L ++  +  
Sbjct: 250 GASGWGRVDLRCDEKAH-PYLLEINTVPGMTDHSLVPMAAQAAGIEFDEMVLQILASSLE 308

Query: 299 LR 300
            R
Sbjct: 309 RR 310


>gi|148828300|ref|YP_001293053.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittGG]
 gi|166198486|sp|A5UIR4|DDL_HAEIG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148719542|gb|ABR00670.1| D-alanylalanine synthetase [Haemophilus influenzae PittGG]
          Length = 306

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 168/302 (55%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVS +SG+A   AL   G+    ID        L     + AFN+LHG
Sbjct: 8   IAVLLGGTSAEREVSFNSGRAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T   
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LDPQAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A
Sbjct: 186 DELTVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E
Sbjct: 245 YDAVGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILE 303

Query: 295 DA 296
            +
Sbjct: 304 LS 305


>gi|294635011|ref|ZP_06713528.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
 gi|291091610|gb|EFE24171.1| D-alanine--D-alanine ligase B [Edwardsiella tarda ATCC 23685]
          Length = 307

 Score =  189 bits (479), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A  + L+ AG     +D        L        F  LHG
Sbjct: 6   VAVLLGGTSAEREVSLESGQAVVNGLKQAGIDAYPVDTRAFPATQLRDAGFTRVFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
             GEDG +Q +LE L++PYT SG++ASAL+MDK+RSKQV  + G+PV P + +       
Sbjct: 66  RGGEDGTLQGVLEFLQLPYTGSGVMASALTMDKLRSKQVWQAAGLPVAPYVAISREQFDE 125

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                T+   + +  P ++KP + GSS+G+  + +       L    +  H D++LIE+ 
Sbjct: 126 GLTMDTLREINDLGLPLIVKPSREGSSVGMSKVNEPCEFDPAL--VEALRHDDEILIEKC 183

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD  L          +FY YE KY S  + +  P+ +  +  + +  L 
Sbjct: 184 LVGPEYTVAFIGDEILPSI-RIKAAGEFYDYEAKYLSDKTEYFCPSGLSAEQEQSLATLV 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D  S +   LE+N  PGMT  S+ P  A  AG SF +L++ 
Sbjct: 243 KRAYQALGCSGWGRVDVMQDE-SGRFCLLEVNTAPGMTSHSLVPMAARQAGMSFSQLVVR 301

Query: 292 MVEDA 296
           ++E A
Sbjct: 302 ILELA 306


>gi|320540403|ref|ZP_08040053.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
 gi|320029334|gb|EFW11363.1| putative D-alanine:D-alanine ligase [Serratia symbiotica str.
           Tucson]
          Length = 306

 Score =  189 bits (479), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 105/305 (34%), Positives = 161/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG A  + L + G     ID      + L     +  F  LHG
Sbjct: 5   VAVLLGGTSAEREISLQSGAAVLAGLREGGIDAHGIDPRDFPVIQLKAQGFNKVFISLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LELLE+PYT SG++ASAL MDK RSK +  S  +PV P + +NR     
Sbjct: 65  RGGEDGTIQGLLELLELPYTGSGVMASALGMDKWRSKMLWQSMELPVAPYVALNRKQYAG 124

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+G+  + +  ++ + L    ++ + D++L+E++
Sbjct: 125 DEKAALLDRLASLGFPLIVKPSCEGSSVGMSKVSESSTLEVAL--EEAFRYDDEVLVEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L           FY Y+ KY S N+ +  P+ +  +   E+  LA
Sbjct: 183 LSGPEYTVAMLGDQVLPSI-RIQSAGRFYDYQAKYISGNTQYFCPSGLSAEQEAEMAALA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+ CRG  R D + D      + LE+N  PGMT  S+ P  A   G SF +L+  
Sbjct: 242 LRAYRALDCRGWGRIDLMQD-SDGSFYLLEVNTSPGMTNNSLVPMAARQFGLSFSQLVTR 300

Query: 292 MVEDA 296
           ++  A
Sbjct: 301 ILALA 305


>gi|307731070|ref|YP_003908294.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
 gi|307585605|gb|ADN59003.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1003]
          Length = 317

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 144/295 (48%), Gaps = 9/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 16  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPSERPLAALKEEGFVRAFNALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 76  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 135

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +  +   +++E+ ++G
Sbjct: 136 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--VEAVKYDRIVVVEKSIEG 193

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  D    ++ LA  A
Sbjct: 194 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTPDEEARMKVLARRA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 254 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 307


>gi|83748768|ref|ZP_00945783.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|207721501|ref|YP_002251941.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|207744399|ref|YP_002260791.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
 gi|83724589|gb|EAP71752.1| D-alanine--D-alanine ligase [Ralstonia solanacearum UW551]
 gi|206586661|emb|CAQ17247.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum MolK2]
 gi|206595804|emb|CAQ62731.1| d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum IPO1609]
          Length = 331

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 153/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAELATQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  + G+P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHGLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ+++G ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAGLPAAYERAARL--DRDVMAEQFIEGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  PA IP ++   VQ L   A+
Sbjct: 198 CAVIGEGDSTTALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPAEVAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +   
Sbjct: 258 RSLGCRGWGRADIMLRKHDNAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|294338820|emb|CAZ87154.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B)
           (D-Ala-D-Ala ligase B) [Thiomonas sp. 3As]
          Length = 378

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 101/304 (33%), Positives = 155/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SGK   +AL+  G      D        L       AF  LHG
Sbjct: 15  VAVLMGGLSAEREVSLMSGKGVLAALQSRGVDAFAFDPSVDDLAALKSFGAQRAFINLHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
            +GEDG VQ  LELL IPYT  G+LASAL++DK  +K++     +       +       
Sbjct: 75  RWGEDGTVQGALELLGIPYTGPGVLASALAIDKAMTKRLWHFENLSTPKWREVGTLIEAR 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P + K    GS+LG+     +  +    L+++      ++L+EQ+++G E+T
Sbjct: 135 AAAAELGFPLIFKATHEGSTLGLKRADSEAEVQAAYLEAA--RFDSRVLVEQFIEGDEVT 192

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G             V     Y YE KY S ++ ++ P+++P D    +Q L   ++
Sbjct: 193 CAVIGAGDQARALPLIRIVAPGGNYDYEHKYFSDDTRYICPSELPADEEARIQDLVLRSY 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +     R+ F LEIN  PGMT  S+ P  A  AG  + +L L ++  
Sbjct: 253 RTLGCRGWARADVMIRATDRQPFLLEINTSPGMTSHSLVPMAARVAGLEYADLCLLILSM 312

Query: 296 ASCL 299
           A+  
Sbjct: 313 AALD 316


>gi|197116892|ref|YP_002137319.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
 gi|226696387|sp|B5EBQ4|DDL_GEOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197086252|gb|ACH37523.1| D-alanine--D-alanine ligase [Geobacter bemidjiensis Bem]
          Length = 305

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 125/297 (42%), Positives = 187/297 (62%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SGKA  ++L   GF+   IDV R +   LA  + +LAF  LHG
Sbjct: 11  IAVLMGGLSAEREVSLNSGKAVLASLVKQGFRAVGIDVGRDLPQRLAEEQVELAFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LEL+ IPYT SG+LASAL++DK+ SK + +S G+ + P  ++ R   + 
Sbjct: 71  RFGEDGSVQGLLELMGIPYTGSGVLASALAIDKIASKVIFASAGLKLAPYQVLRRG-EEL 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP + GSS+G+ +++    +   L    ++ +  ++LIE ++DG E+  G
Sbjct: 130 KLANPLPVVVKPSREGSSVGVGIVRDPSRMQAAL--DEAFRYDSEILIEGFIDGREVQVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L      +PK +FY YE KY+   + H+LPA++P  +Y EV R    AH A+GC
Sbjct: 188 ILNGKALGAI-EIIPKGEFYDYEAKYTDGGAQHILPARLPEAVYAEVLRQGEKAHAALGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              SR DFL    +   F LE+N  PGMT +S+ PE+A  AG +F EL+L +++ AS
Sbjct: 247 DCYSRVDFLVTE-TGDCFLLEVNTLPGMTDLSLLPEIAGGAGIAFGELVLRILQAAS 302


>gi|319786254|ref|YP_004145729.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
 gi|317464766|gb|ADV26498.1| D-alanine/D-alanine ligase [Pseudoxanthomonas suwonensis 11-1]
          Length = 317

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 106/300 (35%), Positives = 161/300 (53%), Gaps = 9/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG+    AL   G     +D   ++   LA  K D  FN+LHG
Sbjct: 20  VAVLMGGTSSEREVSLDSGRNVLEALRARGIDAQPVDGIPALVEALAQEKFDRVFNILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----VNR 115
             GE+G+VQ +L+ L +PYT +G+L SAL++DK+R+KQV  S  +P    +         
Sbjct: 80  GDGENGVVQGLLQALGVPYTGAGVLGSALTLDKIRTKQVWLSLNLPTPRYVRLDRGADAA 139

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               +   +  P ++KP   GSS+G+  +  +  +   +  + +  +  ++L+EQ V G 
Sbjct: 140 AVRAAARSLGLPVIVKPSCEGSSVGVSRVMDEDGLDEAI--ALAARYPGEMLMEQMVVGD 197

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELT GV+GD +L      VP+ ++Y Y  KY + ++ ++ P     D    V+ LA  A 
Sbjct: 198 ELTVGVLGDIALPSI-RIVPRGEWYDYNAKYIAEDTQYLCPGLEGEDE-LRVRELALAAF 255

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A GC G  R D +    +   + LE+N  PGMT  S+ P+ AA  G  F EL   ++E 
Sbjct: 256 RAAGCSGWGRIDVMRSRATGAPYLLEVNTAPGMTSHSLVPKAAAQLGIGFEELCWRILEQ 315


>gi|238026134|ref|YP_002910365.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
 gi|237875328|gb|ACR27661.1| D-alanine--D-alanine ligase [Burkholderia glumae BGR1]
          Length = 313

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 145/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SG+     L +AG      D        L       AFN LHG
Sbjct: 12  VAVLFGGVSAEREVSLNSGRLVLQGLREAGIDAHLFDPSERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT  G+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQLQGALDFYGIRYTGPGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDHA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+   VIK   +  L      +  H   +++E+ ++G
Sbjct: 132 ARAAEIVAKLGLPLFVKPASEGSSVA--VIKVKDAAALPAALDEAGRHDRIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  I      E +RLA  A
Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYLADDTQYLIPCGIEAAKETEFKRLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +GC G  R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FEVLGCSGWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|261379331|ref|ZP_05983904.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
 gi|284797768|gb|EFC53115.1| D-alanine--D-alanine ligase B [Neisseria subflava NJ9703]
          Length = 304

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +++  +   
Sbjct: 67  TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEEFKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|289579362|ref|YP_003477989.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289529075|gb|ADD03427.1| D-alanine/D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 359

 Score =  188 bits (478), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFGEGKNGFFPIDVVFPVLHGPNGEDGTIQGLLELLNIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------TMDSQHLISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R               +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  +  ++ +P  L  ++ ++    +        IE +     +    V    V
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIEKGIEAREIECSVLGNENPEASVAGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P ++FY Y  KY     + + +PA +P +  +E+++LA  A++A+  RG++R DFL D  
Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYKALDLRGMARVDFLMDRN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  V+  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 306 TGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348


>gi|301155888|emb|CBW15357.1| D-alanine:D-alanine ligase [Haemophilus parainfluenzae T3T1]
          Length = 306

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 107/303 (35%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G+    ID        L     D  FN+LHG
Sbjct: 8   IAVLLGGTSAEREVSLNSGAAVLNALVSQGYNAHGIDPKEYNVANLKADGFDRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V +   + 
Sbjct: 68  RGGEDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMEIVTKENANE 127

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G
Sbjct: 128 LNPQAVVEKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--DYALKFDNTILIEEWLAG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT  V+G   L      VP+ +FY Y+ KY S N+ +  PA + ++  +E+ +L   A
Sbjct: 186 DELTVPVLGGEVLPAV-RIVPEGEFYDYDAKYISDNTQYFCPAGLSVEREQELAKLVKRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  +GCRG SR D + D        +E+N  PGMT  S+FP+ A+  G SF +L++ ++E
Sbjct: 245 YDVVGCRGWSRIDVMTDAQGN-FRLVEVNTNPGMTSHSLFPKSASTVGISFEQLVVKILE 303

Query: 295 DAS 297
            ++
Sbjct: 304 LSA 306


>gi|238898843|ref|YP_002924525.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|259645168|sp|C4K734|DDL_HAMD5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229466603|gb|ACQ68377.1| D-alanine-D-alanine ligase B, affects cell division [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 320

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 110/319 (34%), Positives = 168/319 (52%), Gaps = 27/319 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++SL SG A  + L +AG     ID    +   L       AF  LHG
Sbjct: 5   VAVLLGGTSSERQISLQSGHAVVAGLREAGIDARPIDTKNFLVTELKEKGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L+IPYT SG++ASAL+MDK RSK +    G+PV P + +NR  +  
Sbjct: 65  RDGEDGHLQAVLEFLKIPYTGSGVMASALAMDKHRSKMIFQGAGLPVSPYVALNREQIWP 124

Query: 121 Q-----------------------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                                   + +  P ++KP + GSS G+  ++    +   L ++
Sbjct: 125 NVTQNTSNDLLLNNRISNKLIKNINQLGLPLIVKPSREGSSFGMTKVEHLDQLDDALKKA 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
               + +++L+E++  G ELT  ++GD  L    I V    FY Y+ KY S  + +  P+
Sbjct: 185 WH--YDEEILVEKWHFGTELTVAILGDTVLPSIRIQVS-DIFYDYQAKYVSDKTQYFCPS 241

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  +  K++  L+  A++A+GC G  R D + D      + +EIN  PGMT  S+FP  
Sbjct: 242 GLKQEQEKQLATLSMNAYRALGCDGWGRVDVMLDDE-GHFYLMEINTAPGMTDHSLFPMA 300

Query: 278 AAYAGYSFRELLLWMVEDA 296
           A  AG+SF EL+  ++  A
Sbjct: 301 ARQAGFSFSELVCKILSLA 319


>gi|257092206|ref|YP_003165847.1| D-alanine--D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
 gi|257044730|gb|ACV33918.1| D-alanine/D-alanine ligase [Candidatus Accumulibacter phosphatis
           clade IIA str. UW-1]
          Length = 308

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 101/303 (33%), Positives = 158/303 (52%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG    +AL   G      D        LA      AF  LHG
Sbjct: 9   VAVLFGGRSAEREVSLNSGSRVLAALRRQGVDAHAFDPAERQLDDLA--GFARAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q  LEL+ IPYT SG++ASAL MDK R+K +  + G+PV P ++++  T  +
Sbjct: 67  RYGEDGTIQGALELMGIPYTGSGVMASALGMDKWRTKLLWQAAGLPVPPYLMLDDATDLA 126

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+GI  +K+   +     ++ +  H   ++ E+ + G E T
Sbjct: 127 AVEAALGLPLFVKPACEGSSIGITKVKRPGELAAA--RAEAARHDSLVIAERAILGGEYT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +        P ++FY YE KY   ++ +  P  +      E+++ A  A + +
Sbjct: 185 VAIL-GNAALPIIKIEPSNEFYDYEAKYLRDDTAYRCPCGLTETRESELRQQALDAFRVL 243

Query: 239 GCRGISRSDFLFDPLSRKV----FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G RG  R DFL D  +       ++LE+N  PGMT  S+ P  A  AG S+ +L++ ++ 
Sbjct: 244 GGRGWGRVDFLLDQAAAAGGGAAYFLEVNTSPGMTDHSLVPMAARAAGMSYDDLVVRILA 303

Query: 295 DAS 297
            A+
Sbjct: 304 LAT 306


>gi|86604840|ref|YP_473603.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
 gi|123508098|sp|Q2JXY2|DDL_SYNJA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86553382|gb|ABC98340.1| D-alanine--D-alanine ligase B [Synechococcus sp. JA-3-3Ab]
          Length = 323

 Score =  188 bits (478), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/303 (35%), Positives = 167/303 (55%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           + +L GG S+ER+VSL +GKAC  ALED G +   ID +  + L L   +    D  +  
Sbjct: 3   IVILAGGRSAERQVSLVTGKACKRALEDLGHRAKLIDPEEDLPLRLWQERQAGCDFVWIA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-- 115
           LHG  GEDG+VQ +LE L +PY  SG LASAL+MDK+ SKQ+  + G+P    ++ +   
Sbjct: 63  LHGPGGEDGVVQGMLEWLGLPYQGSGPLASALAMDKLVSKQIFRAEGIPTPEWLVWDEAQ 122

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                +    +  P V+KP   GS++GI + + + S+   L  +SS     ++ +E+Y+ 
Sbjct: 123 PLSWAECVARLGSPLVVKPSNSGSTVGISLARDEVSLAQGLALASSV--SSRVFLERYIP 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+T  ++    L   EI   + DFY YE KY+   S H++P  +        +     
Sbjct: 181 GKEITLSILSGQVLPAIEIIPAQGDFYDYEAKYAPGGSRHLIPCSLSAAGLARCEAAGLR 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++ +GC G++R D   D      + LE+N  PGMTP S+ PE AA  G++F EL+  M+
Sbjct: 241 AYRVLGCEGLARVDLRVDA-DENPWVLEVNTLPGMTPTSLCPEAAAALGWTFTELVERML 299

Query: 294 EDA 296
           +DA
Sbjct: 300 QDA 302


>gi|307544554|ref|YP_003897033.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
 gi|307216578|emb|CBV41848.1| D-alanine--D-alanine ligase [Halomonas elongata DSM 2581]
          Length = 305

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 109/298 (36%), Positives = 166/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG+A  +AL+  G      D        L  L PD  F  LHG
Sbjct: 8   VVVLYGGDSAEREVSLKSGEAILAALQRGGVAPIAFDPAEGGLAGLEALAPDRVFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  L+LL IPYT SG+LASAL MDK R+K V  + G+P    +++N  +  +
Sbjct: 68  RGGEDGTLQGALDLLGIPYTGSGVLASALGMDKQRTKLVWQALGLPTPECVMLNAESDWN 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP+  GS+LGI ++   +++      ++ ++   +++ E+++ G E T
Sbjct: 128 AVVERLGLPLIVKPVHEGSTLGITIVDSAETLAAAYRDAARYD--ARVMAERFIQGEEYT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L    + VP S FY YE KY S  + + LP  +     K +  L   A +A+
Sbjct: 186 VSLLGDEALPAIRVEVP-SGFYDYEAKYLSDETLYHLPCGLSETDEKALAELCREAFEAV 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R D + D    + + LE+N  PGMT  S+ P+ AA+AG  F  L+L +++ A
Sbjct: 245 GCRGWGRVDVMRDDQ-GRFWLLEVNTVPGMTDHSLVPQAAAHAGIDFDTLVLRILDTA 301


>gi|297545503|ref|YP_003677805.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296843278|gb|ADH61794.1| D-alanine/D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 359

 Score =  188 bits (477), Expect = 7e-46,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 159/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEEGKNVFFPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------TMDSQHLISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R               +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIGDLETIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  +  ++ +P  L  ++ ++    +        IE +     +    V    V
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIEKGIEAREIECSVLGNENPEASVAGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P ++FY Y  KY     + + +PA +P +  +E+++LA  A++A+  RG++R DFL D  
Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEIRKLAIKAYRALDLRGMARVDFLMDRN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  V+  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 306 TGTVYLNEVNTIPGFTKISMYPKLWEASGKSYSALLDDLINLA 348


>gi|37519866|ref|NP_923243.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
 gi|39930828|sp|Q7NNW1|DDL_GLOVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|35210858|dbj|BAC88238.1| D-alanine--D-alanine ligase [Gloeobacter violaceus PCC 7421]
          Length = 302

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 163/301 (54%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL G  S EREVSL SG+A  +ALE  G +V+ +D    + + L    PD  +  LHG
Sbjct: 3   ITVLSGSDSPEREVSLVSGRAVQAALETLGHEVTMVDPGPDLPVRLLENPPDFVWIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNR 115
           + GE+G +Q +L+ L +PY  SG+ ASA++MDK+ SK++  + G+P         +    
Sbjct: 63  DKGENGKLQGLLDWLGLPYNGSGVTASAIAMDKVVSKRLFVAEGIPTPAYRVAEAVPQVS 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP  GGS++G+ + ++   +P  +    +  +  Q+LIEQY+ G 
Sbjct: 123 ECQAWLAALGSPVVVKPADGGSTVGVTIAREAGHLPEAV--RLALQYSPQVLIEQYIPGQ 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+T  ++    L   EI     DFY YE KY+   S H++P  +  D+ K     A+ A 
Sbjct: 181 EITVALLDGLVLPAIEIVPQGRDFYDYEAKYAPGGSRHLIPPNLAADVLKASVDAAYRAC 240

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+G  G+ R+D   DP   + + LE+N  PGMT  S+ PE A  AG  F +L+  +++ 
Sbjct: 241 RAVGSTGLVRADVRVDPE-GRPWVLEVNTLPGMTATSLAPEAAQAAGIDFEQLIQRIIDR 299

Query: 296 A 296
           +
Sbjct: 300 S 300


>gi|114566682|ref|YP_753836.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|122318278|sp|Q0AXT9|DDL_SYNWW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114337617|gb|ABI68465.1| D-alanine--D-alanine ligase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 309

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 110/304 (36%), Positives = 155/304 (50%), Gaps = 13/304 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VLMGG S EREVSL SGKA    L+DAG++V  +D        +    PD+ F  LHG  
Sbjct: 6   VLMGGTSEEREVSLKSGKAVYEGLKDAGYEVEALDFTPETIHRIREYSPDVVFITLHGKN 65

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDK--------MRSKQVVSSCGVPVCPSILVN 114
           GEDG VQ  LELL IPYT SG+LASA+ M+K                   +         
Sbjct: 66  GEDGTVQGYLELLGIPYTGSGVLASAVCMNKVITKKLLSYEGLPTADFQVIKKRGFNRDL 125

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                       P V+KP   GSS+G  +++K ++I   L    + +  +++L+E+++ G
Sbjct: 126 FNPDLLMEDFGLPLVVKPATQGSSVGTSIVRKRKNIVPAL--ELALSLDEEILVEKFIAG 183

Query: 175 IELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            ELT  V    +         VPK+++Y YE KY    S H++PA+I  +  + V+ ++ 
Sbjct: 184 TELTVTVLGKDNLKTLPVIEIVPKNEYYDYESKYMPGMSDHLIPARISEEERERVEEISC 243

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+ A+GCRG  R D + D      + LEIN  PGMT  S+ P+ A  AG  F ELL   
Sbjct: 244 KAYDAVGCRGYGRIDLILD-RGGNPYILEINTLPGMTGTSLVPDAARAAGIKFPELLDLF 302

Query: 293 VEDA 296
           V+ A
Sbjct: 303 VKMA 306


>gi|269101957|ref|ZP_06154654.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268161855|gb|EEZ40351.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 303

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 98/301 (32%), Positives = 165/301 (54%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG SSEREVSL SG    +A+E  G +   +D       +L   K D  F  LHG
Sbjct: 3   IGVLYGGDSSEREVSLKSGTRIIAAIESLGHEAIHLDPRYIDLSMLGFYKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNR 115
             GE G VQ++L++L+IPY  SG+LASA+S++K+++K++  + G+   P +     +   
Sbjct: 63  GMGESGHVQSLLDILQIPYIGSGVLASAISLNKLKTKEIWQANGLITAPWVLVQKTMPQV 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             M     ++ P V+KPL  G S+G+     +  +   L   +++ +  ++L+EQ++ G 
Sbjct: 123 DIMALCSELTFPVVVKPLNQGCSIGVAKADNEVQLWDAL--LAAFEYDTEVLVEQFIVGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+   +L V +I     +F+ +  K+ + ++T+  P+ +     + +Q     A+
Sbjct: 181 EYTCAVLNGEALPVVQIC--SEEFFDWNAKFGTQSATYHCPSDLTAIEEQTMQETILAAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           QA+GCRG  R D L    +  V+ +E+N  PGMT  S+FP  AA  G S+  L+  +++ 
Sbjct: 239 QALGCRGWGRIDVLLTEHND-VYLIEMNTIPGMTERSVFPMAAAQVGLSYEALIEQLLDH 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|281412315|ref|YP_003346394.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
 gi|281373418|gb|ADA66980.1| D-alanine/D-alanine ligase [Thermotoga naphthophila RKU-10]
          Length = 303

 Score =  188 bits (477), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   I +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P V+KP + GSS+G+ + + D+     + +         +++++Y+ G E+T 
Sbjct: 122 --SPLGYPCVVKPRREGSSIGVFICESDEEFQHAIKEDLPQY--GSVIVQEYIPGREMTV 177

Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++               PK  FY Y  KY+   +  +LPA +     + V+  A  A  
Sbjct: 178 SILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAFV 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+  +++ A
Sbjct: 238 EAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295


>gi|62259612|gb|AAX77863.1| unknown protein [synthetic construct]
          Length = 331

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 103/297 (34%), Positives = 158/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S EREVSL SGKA   +L   G+    +D   + +   L  LKPD  F  LH
Sbjct: 32  IVVLYGGDSPEREVSLKSGKAVLDSLISQGYDAVGVDASGKELVAKLLELKPDKCFVALH 91

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G V A+LE+LEI +T S + +S ++MDKM SK+++    +P           + 
Sbjct: 92  GEDGENGRVSALLEMLEIKHTSSSMKSSVITMDKMISKEILMHHRMPTPM-AKFLTDKLV 150

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           ++  IS P  +KP  GGSS+    +K  Q +     ++S +    +++IEQ+V G E+T 
Sbjct: 151 AEDEISFPVAVKPSSGGSSIATFKVKSIQELKHAYEEASKY---GEVMIEQWVTGKEITV 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D          P+++FY YE K  S  S +  P+ +      EV++LA  A+  +G
Sbjct: 208 AIVNDEVYSSVW-IEPQNEFYDYESK-YSGKSIYHSPSGLCEQKELEVRQLAKKAYDLLG 265

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G +R DF++D      + +EIN  PGMT  S+ P+ AA  G  F   +  ++E A
Sbjct: 266 CSGHARVDFIYDDRGN-FYIMEINSSPGMTDNSLSPKSAAAEGVDFDSFVKRIIEQA 321


>gi|42520004|ref|NP_965919.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
 gi|81831298|sp|Q73IQ8|DDL_WOLPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|42409741|gb|AAS13853.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Drosophila
           melanogaster]
          Length = 315

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      ++     + 
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   I  PYV+KP+  GSS+G+ +I   +        SS+    +++++E+Y+ GIEL  
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKNNSSTIM--EKMIVEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++       PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 183 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 242 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 299


>gi|256005208|ref|ZP_05430176.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|255990862|gb|EEU00976.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 2360]
 gi|316941575|gb|ADU75609.1| D-alanine/D-alanine ligase [Clostridium thermocellum DSM 1313]
          Length = 376

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 153/357 (42%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               D         +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|329118777|ref|ZP_08247475.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
 gi|327465124|gb|EGF11411.1| D-alanine-D-alanine ligase B [Neisseria bacilliformis ATCC
           BAA-1200]
          Length = 303

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 151/298 (50%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER+VSL SG+A  +AL + G      D   +    L     D AFN+LHG
Sbjct: 7   VAVLMGGFSSERQVSLDSGRAVLAALREKGVDAHAFDPKETPLGGLKTQGFDCAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LE L I YT  G+LASA+ MDK R K +    G+PV    ++   +   
Sbjct: 67  IFGEDGTVQGALEALGIRYTGCGVLASAVGMDKYRCKLLWKGLGLPVPDYEVLREDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ IK+   +     +   +      +I +   G    
Sbjct: 127 AVERKLGLPLFVKPANEGSSVGVVKIKEKGRLKNVYRELRQYKGE---IIAEKFIGGGEY 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +       +   +P ++FY  E KY   ++ ++ P+ +     K+++ L   A  AI
Sbjct: 184 TCAILGGEALPSVRIIPATEFYDQEAKYDRDDTVYLCPSDLSEADEKQMRELTVRAFDAI 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG  R DFL D  + +++ LE N  PGMT  S+ P+ AA AG  F +L L +++ A
Sbjct: 244 GGRGWGRIDFLKD-KNGRLYLLEANTLPGMTSHSLVPKAAAQAGIGFADLCLRILQTA 300


>gi|281418964|ref|ZP_06249982.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
 gi|281407421|gb|EFB37681.1| D-alanine/D-alanine ligase [Clostridium thermocellum JW20]
          Length = 376

 Score =  188 bits (477), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 92/357 (25%), Positives = 152/357 (42%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                         +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDAPVASTVGEIIPGNEFYDYKAKYIDNTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|225181129|ref|ZP_03734575.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
 gi|225168098|gb|EEG76903.1| D-alanine/D-alanine ligase [Dethiobacter alkaliphilus AHT 1]
          Length = 353

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 100/333 (30%), Positives = 162/333 (48%), Gaps = 39/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAHLKP-------- 51
           +AVL GG S E EVSL S  +    L D G ++V  + + R     L  ++         
Sbjct: 6   IAVLHGGRSGEHEVSLRSAASIMDGLRDVGQYEVLPVFISREGIWTLEGVRVAILPEPGI 65

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F VLHG +GEDG VQ +LEL  IPY  +G+  SA+ MDK+
Sbjct: 66  GGLYVLEGEKAGEVIPVDVVFPVLHGTYGEDGTVQGLLELARIPYVGAGVPGSAIGMDKI 125

Query: 95  RSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIK 145
             K  + + G+PV P +                  +  ++ P  +KP   GSS+GI    
Sbjct: 126 LMKAGLLAAGLPVGPYLWFTVADWEENKKQLLKQIEEELAFPCFVKPANLGSSVGISKAY 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   + ++    +  ++L+E+ + G E+ C V+G+   + +     +P +DFY Y 
Sbjct: 186 DSAQLEKAINEAL--QYDRRVLVEKMLTGCEIECSVLGNDRPEASVPGEIIPCNDFYDYS 243

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY   NS   +PAK+  +  K+V+ +A     A+ C G+ R DF  D  + +++ +EIN
Sbjct: 244 AKYLDDNSGLEIPAKLAPETIKKVREMAVQTFIALDCAGLGRVDFFVDEKTGEMWIIEIN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P++   +G SF ELL  +V+ A
Sbjct: 304 TLPGFTSISMYPKLWEASGISFNELLQKLVKLA 336


>gi|125974439|ref|YP_001038349.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
 gi|190359126|sp|A3DGS7|DDL_CLOTH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|125714664|gb|ABN53156.1| D-alanine--D-alanine ligase [Clostridium thermocellum ATCC 27405]
          Length = 376

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 153/357 (42%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE EVS  S  +    +    F VS I + +    +                 
Sbjct: 9   VIFGGQSSEHEVSRISATSILKNINLDKFDVSMIGITKDGKWLYYDGPIDKIPSGEWEEI 68

Query: 46  -----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQA 70
                                                  K D+ F VLHG  GEDG +Q 
Sbjct: 69  ALKDGTRSIADRVSLFDNIISCKNNACGLEKASENEKSKKIDVVFPVLHGCNGEDGTIQG 128

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQ 121
           + EL  IPY   G+LASA+ MDK+ +K +    G+P    +   R  +           +
Sbjct: 129 LFELAGIPYVGCGVLASAVGMDKIYAKIIFEKAGIPQADYLYFTRKEIYGDVEGVVDKIE 188

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
              S P  +KP   GSS+G+        +   L+ ++   +  ++LIE++++G E+ C V
Sbjct: 189 EKFSYPVFVKPSNAGSSVGVSKAHDKNELKEALIYAA--RYDRKVLIEEFINGREVECAV 246

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               D         +P ++FY Y+ KY    S   +PA +P +  ++++  A  A +A+ 
Sbjct: 247 LGNDDPVASTVGEIIPGNEFYDYKAKYIENTSKIKIPADLPEETVEQIRNYAVKAFKALD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF     + KV+  EIN  PG T +S++P +   +G S+ EL+  +++ A
Sbjct: 307 CSGLARVDFFVHKETGKVYINEINTMPGFTSISMYPMLWEESGISYPELIEKLIDLA 363


>gi|148269801|ref|YP_001244261.1| D-alanyl-alanine synthetase A [Thermotoga petrophila RKU-1]
 gi|166198512|sp|A5IKG2|DDL_THEP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147735345|gb|ABQ46685.1| D-alanine--D-alanine ligase [Thermotoga petrophila RKU-1]
          Length = 303

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 151/300 (50%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEYTVFDVKEDFLKEVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +    V +   I +  F   
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLATYRFLKDI-VEIPDFIEIREFMET 121

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P V+KP + GSS+G+ + + D+     L +         +++++Y+ G E+T 
Sbjct: 122 --SPLGYPCVVKPRREGSSIGVFICESDEEFQHALKEDLPRY--GSVIVQKYIPGREMTV 177

Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++               PK  FY Y  KY+   +  +LPA +     + V+  A  A  
Sbjct: 178 SILETEKGFEVLPILELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKETALKAFV 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GCRG  R D +F   + + ++LEIN  PG+T  S  P  A   G  F EL+  +++ A
Sbjct: 238 EAGCRGFGRVDGIF--SNGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295


>gi|327475199|gb|AEA77194.1| D-alanyl-alanine synthetase A [Exiguobacterium sp. EPVM]
          Length = 305

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 175/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GGIS EREVSL+SGK    ALE+ G +V  ID        L  L+ D+  + LHG
Sbjct: 3   VAVLYGGISGEREVSLTSGKGMIEALEERGHEVVAIDFHPDRADELLTLQADVVLSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ++LE+  +PYT SG+LASAL+MDK R+K + ++ G+ +   +L+       
Sbjct: 63  KYGEDGRVQSLLEMAGLPYTGSGVLASALAMDKARAKIIFAAAGIRIARDVLIETGDDID 122

Query: 121 Q----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP + GSS G+ +   +  +   + ++ +      +L+EQY+ G E
Sbjct: 123 AKVVEWGSEFPCVVKPAQEGSSNGLTIAMDEAMLREGIDKAFAC--DTAVLVEQYIKGRE 180

Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           LT  V+G+   +        +PK++FY YE KYS   S HV PA++P  + +EVQ  A  
Sbjct: 181 LTVPVLGNHGAEAALPVIEIIPKNEFYDYESKYSEGGSIHVCPAELPEALTEEVQTAAIK 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+GC G SRSDFL        + LE N  PGMTP+S+FP+ A   G S+ ELL   +
Sbjct: 241 AHRALGCSGYSRSDFLISE-DGLAYILETNTLPGMTPLSLFPDSARAVGISYGELLERFI 299

Query: 294 EDA 296
           E A
Sbjct: 300 ELA 302


>gi|319639048|ref|ZP_07993805.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
 gi|317399626|gb|EFV80290.1| D-alanine-D-alanine ligase [Neisseria mucosa C102]
          Length = 304

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 107/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +++  +   
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|114777859|ref|ZP_01452790.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
 gi|114551850|gb|EAU54390.1| D-alanine--D-alanine ligase [Mariprofundus ferrooxydans PV-1]
          Length = 307

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 148/296 (50%), Gaps = 12/296 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            VLMGG S+EREVSL SG A   AL  AG     ID+ ++    +A    D AF  LHG 
Sbjct: 15  GVLMGGTSAEREVSLRSGAAVLDALRAAGVDAVGIDLQQNWADQIAKAAIDTAFIALHGT 74

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG VQ +LE++ IPYT S ++ASAL M+K   KQV+   G+     I +     +  
Sbjct: 75  LGEDGCVQGLLEIMGIPYTGSHVMASALCMNKRLCKQVLGQAGLSTPMDIRIEVTGPE-- 132

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P  +KP+  GSS+G+  I   Q       Q+ +       + E  V+G+E+   V
Sbjct: 133 ---RYPVFVKPVAEGSSVGLHRISSQQE-----WQALNIQSPAAWMAEMPVNGVEIAVSV 184

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   +L       PKS  Y Y  KY+   + +  PA++P++  +     A  A  A GC 
Sbjct: 185 LAGVALMPV-EVAPKSGVYDYASKYTVGATEYFCPARLPMETVRYCMDCAEKAVAACGCT 243

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G  R D +      +   LEIN  PGMT  S+ P+ AA AG  F+ L L ++E AS
Sbjct: 244 GAPRVDMIV-GSGGEAVILEINTLPGMTATSLLPKAAAVAGIDFQTLCLRILETAS 298


>gi|254967109|gb|ACT97597.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 304

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 108/299 (36%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +++  +   
Sbjct: 67  TFGEDGAVQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEDEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|99035926|ref|ZP_01314973.1| hypothetical protein Wendoof_01000181 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 317

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      ++     + 
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   I  PYV+KP+  GSS+G+ +I   +        SS+    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKNNSSTIM--EKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++       PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|289423749|ref|ZP_06425544.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
 gi|289155788|gb|EFD04458.1| D-alanine--D-alanine ligase B [Peptostreptococcus anaerobius 653-L]
          Length = 300

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 143/299 (47%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+SSEREVSL+SGKA    L+   + V    +D    +       DLA   LHG
Sbjct: 4   IAVLYGGVSSEREVSLNSGKAMIDNLDKNKYDVIDFRIDSKDDIFKLDKDIDLALIGLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FT 117
            FGEDG +QA+LE + I Y+    L S + MDK  +K +    GV      +V       
Sbjct: 64  KFGEDGSIQAVLETMGINYSGCNPLTSGILMDKNFTKIIARENGVKTANWAIVKSVDAID 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P  IKP  GGSS+   ++K    +   +    ++ + D ++IE+Y+ GIE 
Sbjct: 124 YDKIDEIGYPVFIKPNSGGSSVATNLVKSKDQVESAV--IEAFKYDDIVMIEEYIKGIEH 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++               +F+ YE KYS+ N       ++   + K ++  +      
Sbjct: 182 TSFILNGEVFPTI-RITSDHEFFDYEAKYSTSNGAREEVVELEESVAKTLEDTSRTCWDI 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             CRG  R+D++      +V+ LEIN  PGMT  S+ P+ A   G  +  LL  ++E A
Sbjct: 241 YNCRGYVRADYIITE-DNQVYLLEINTLPGMTETSLIPKSAKARGIDYSGLLDKLIESA 298


>gi|225630001|ref|YP_002726792.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
 gi|259645176|sp|C0R5F9|DDL_WOLWR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225591982|gb|ACN95001.1| D-alanine--D-alanine ligase [Wolbachia sp. wRi]
          Length = 317

 Score =  188 bits (476), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 116/298 (38%), Positives = 178/298 (59%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      ++     + 
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   I  PYV+KP+  GSS+G+ +I   +        SS+    +++++E+Y+ GIEL  
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHEDYLELKDNSSTIM--EKMIVEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D ++       PK+ FY YE KY+   + H+ PAKIP +IYK     A   HQ +G
Sbjct: 185 AVLLDEAIGTI-EVRPKNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           C+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED+
Sbjct: 244 CKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIEDS 301


>gi|256821916|ref|YP_003145879.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
 gi|256795455|gb|ACV26111.1| D-alanine/D-alanine ligase [Kangiella koreensis DSM 16069]
          Length = 312

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 94/306 (30%), Positives = 167/306 (54%), Gaps = 9/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+E+E+SL SGKA  +AL + G     ID +      +     D  +N LHG
Sbjct: 9   VVVLYGGNSAEKEISLRSGKAVYNALLNVGIDAVLIDPEAEGLAAIQASNCDRVWNALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++QA L+LL +PYT SG++ASA++MDK+R+K +  +   PV    ++N   +  
Sbjct: 69  RGGEDGVIQAHLQLLGLPYTGSGVMASAIAMDKLRTKLIWQAMSYPVAKHRMLNTGVLTI 128

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        ++   ++KP++ GSS+G+      +++   +  +    +  ++++EQ++DG
Sbjct: 129 EQAEDVLADMNDCVMVKPIREGSSVGMAKADNAKALVEAVENAK--QYDREVMLEQWIDG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    +  P +  Y ++ KY S ++ +V P+ +  +   E+  L+  A
Sbjct: 187 EEYTVSILNGKALPSIRVKTPNTF-YDFQAKYQSQSTEYVCPSGLNDEDEAELAELSQAA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+GC G  R D + +  +     LE+N  PGMT  S+ P+ A  +G SF EL++ ++E
Sbjct: 246 FYALGCEGWGRVDLMRERSTGNWLLLEVNTVPGMTETSLVPKAAKQSGMSFDELVVAVLE 305

Query: 295 DASCLR 300
            +   R
Sbjct: 306 TSFVER 311


>gi|315186147|gb|EFU19909.1| D-alanine/D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 364

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 101/339 (29%), Positives = 161/339 (47%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVS  S  A    L+   F+V  + +       L              
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHEGRWYLQREVRVKDGALEVT 68

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWAVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V R ++   +         +  P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI  +  ++ +        ++ +  +++IEQ ++  E+ CGV G+  +        +   
Sbjct: 189 GISKVHDERGLKKA--CELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEIIHTH 246

Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +FY YE KY         +PA++  +  + V+ +A  A++A+ C G +R DFL D  +  
Sbjct: 247 EFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRNVAEKAYRALECEGFARVDFLLDTETEV 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +  EIN  PG TPVS+FP MA  AG SF +LL  ++E 
Sbjct: 307 FYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIEL 345


>gi|190572803|ref|YP_001970648.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia K279a]
 gi|190010725|emb|CAQ44334.1| putative D-alanine--D-alanine ligase B [Stenotrophomonas
           maltophilia K279a]
          Length = 320

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 115/298 (38%), Positives = 167/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D    +   LA    D  FN+LHG
Sbjct: 20  VAVLLGGTSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPELAKALAAGGIDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+   +
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDASNV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HALAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L      VPK  +Y Y  KY + ++ ++ P     D  + ++R+A  A +A
Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGGDEEE-IRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG SF EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRSSGRFFLLEVNTAPGMTSHSLVPKAAGQAGISFDELVWRVLEQ 313


>gi|188584653|ref|YP_001916198.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|229485967|sp|B2A2Z6|DDL_NATTJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|179349340|gb|ACB83610.1| D-alanine--D-alanine ligase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 365

 Score =  187 bits (475), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 157/348 (45%), Gaps = 51/348 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG S E EVSL S  +  +AL+   F+V  I + ++   +               
Sbjct: 6   VGVLFGGRSGEHEVSLKSANSILNALDRELFEVIPIGIRKNGEWISGEAPLEELETGIKN 65

Query: 46  ----------------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           L  L P       DL F VLHG FGEDG VQ  L+L  IPY  S
Sbjct: 66  QGNYAVSILPDPSKKVLWKLDPFEKISEIDLIFPVLHGTFGEDGTVQGFLDLCGIPYVGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+L S+L+MDK+  K+++   G+ V       R   +          +  +S P  +KP 
Sbjct: 126 GVLGSSLAMDKVMMKKILRRHGLQVANYYSFKRSEWEQDRDEIIFSIEKQLSYPIFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI  +K  + +   +  +    +  + L E+++ G E+        +    V  
Sbjct: 186 NLGSSVGISKVKNREELIQGIDLAV--KYDMKCLAEEFIPGKEIELSILGNDNPKTSVPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P ++FY Y  KY +  S  V+PA +   +  +++ +   A + + C G+SR D+   
Sbjct: 244 EIIPANEFYDYNAKYINNKSKLVIPAPLSETLKTKIEDMGVEAFRVLDCYGLSRVDYFVL 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               +V+  EIN  PG T +S++P++   +G S+ +LL  ++  A   
Sbjct: 304 EDQEEVYINEINTMPGFTEISMYPKLWTESGLSYSQLLTDLIYLALAR 351


>gi|299065610|emb|CBJ36782.1| D-alanine-D-alanine ligase B, affects cell division [Ralstonia
           solanacearum CMR15]
          Length = 331

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 98/302 (32%), Positives = 151/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ++DG ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIDGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  PA IP D    VQ L   A+
Sbjct: 198 CAVIGEGEHATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPADAAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +   
Sbjct: 258 RSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|17547561|ref|NP_520963.1| D-alanine--D-alanine ligase [Ralstonia solanacearum GMI1000]
 gi|39930909|sp|Q8XVI9|DDL_RALSO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17429865|emb|CAD16549.1| probable d-alanine--d-alanine ligase (d-alanylalanine
           synthetase)(d-ala-d-ala ligase) protein [Ralstonia
           solanacearum GMI1000]
          Length = 331

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/302 (32%), Positives = 151/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ERE+SL SG    +AL   G      D        LA          LHG
Sbjct: 20  VGVILGGRSAEREISLLSGNGVLAALRSRGVDAHPFDPGTQPVAGLAAQGFHRVVISLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
            FGEDG +Q +LE   IPYT SG+LASAL+MDK  +K++  +  +P    ++++      
Sbjct: 80  RFGEDGTIQGLLEQFGIPYTGSGVLASALAMDKEATKRLWQTHSLPTPDFVMLHAGADWQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +P    +++       ++ EQ++DG ELT
Sbjct: 140 AVADRLGLPLIVKPAREGSSIGLTKVTSVAELPAAYEKAARL--DRDVMAEQFIDGDELT 197

Query: 179 CGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ +  PA IP +    VQ L   A+
Sbjct: 198 CAVIGEGEHATALPLIRIVAPQANYDYQHKYFTDDTRYECPAPIPAEAAARVQALVVQAY 257

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +++GCRG  R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L +   
Sbjct: 258 RSLGCRGWGRADIMLRKHDGAPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQLAAT 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|220927741|ref|YP_002504650.1| D-alanyl-alanine synthetase A [Clostridium cellulolyticum H10]
 gi|254767725|sp|B8I590|DDL_CLOCE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219998069|gb|ACL74670.1| D-alanine/D-alanine ligase [Clostridium cellulolyticum H10]
          Length = 376

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVS  S ++    ++   + V  I + +S   +               
Sbjct: 6   VAIIFGGQSSEHEVSRVSAQSVIENIDKQKYDVEIIGITKSGQWLKYDGPVEKIGNGDWE 65

Query: 46  -LAHLKP--------------------------------DLAFNVLHGNFGEDGLVQAIL 72
            +A  KP                                D+ F VLHG  GEDG +Q + 
Sbjct: 66  AIAQKKPVESLSQAGISSSGITTVNSVRQIMPGNVKAPIDVIFPVLHGCNGEDGTIQGLF 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           EL  IPY   G+L SA+ MDK  +K +    G+P    ++ NR  + +         +  
Sbjct: 126 ELAGIPYVGCGVLGSAVGMDKAYTKIIFEKEGLPQGDYLVFNRKQVYNRIEDVVAQIEGR 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           ++ P  +KP   GSS+G+      +S+   L  ++   +  ++L+E++++G E+ C V  
Sbjct: 186 LTYPCFVKPSNAGSSVGVNKASDRESLVKALNIAA--KNDRRILVEEFINGREIECAVLG 243

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +         VP +DFY YE KY     +   +    +  +  ++++  A  A + + 
Sbjct: 244 NDNPVASTVGEVVPCNDFYDYEAKYQVGDSSKVVIPAPNLSKETVEKIREYAVRAFKCLD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR DF     + +++  EIN  PG T +S++P++ A +G  + EL+  ++E A
Sbjct: 304 CAGLSRVDFFVHKETGEIYINEINTLPGFTQISMYPKLWAASGIPYSELINKLIELA 360


>gi|323527428|ref|YP_004229581.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
 gi|323384430|gb|ADX56521.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1001]
          Length = 313

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/295 (31%), Positives = 143/295 (48%), Gaps = 9/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVMRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +  +   +++E+ ++G
Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--VEAVKYDRIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +       ++ LA  A
Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTPAEETRMKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|78484930|ref|YP_390855.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
 gi|123555841|sp|Q31I42|DDL_THICR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78363216|gb|ABB41181.1| D-alanine--D-alanine ligase [Thiomicrospira crunogena XCL-2]
          Length = 313

 Score =  187 bits (475), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 100/295 (33%), Positives = 157/295 (53%), Gaps = 6/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+++ER+VSL SG     AL+  G      DV     LV    K D AF  LHG
Sbjct: 18  VAVLMGGVAAERDVSLRSGAEVLKALKSEGVDAVGCDVTSVAQLVEIAQKYDRAFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG VQA+L+ L +PYT SG+ ASAL+MDK+R+K +    G+P    I+V+      
Sbjct: 78  RWGEDGGVQAVLDSLALPYTGSGMTASALAMDKLRTKWLWKGVGLPTPAFIVVSPSRPLD 137

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                ++ P ++KP   GSS+G+  +    ++   +    +  +  ++LIEQ++ G E T
Sbjct: 138 VETFDLTFPVIVKPSHEGSSIGMRKVDTLDALQEAV--DFAQQYDSEILIEQWITGREFT 195

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+   +L + ++       Y ++ KY S  + ++ P  + +   K +Q L   A  A+
Sbjct: 196 CAVLDGEALPMIQLKTDHDF-YDFDAKYQSNTTEYLCPCGLEIAEEKRIQALVLQAFDAV 254

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G R   R D + D    + + +EIN  PGMT  S+ P  A     SF +L+L ++
Sbjct: 255 GARHWGRVDLMLDDQ-NQPWLIEINTVPGMTDHSLVPMAAKAVDLSFSKLVLKLI 308


>gi|71281200|ref|YP_271111.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
 gi|123630929|sp|Q47VR1|DDL_COLP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71146940|gb|AAZ27413.1| D-alanine--D-alanine ligase [Colwellia psychrerythraea 34H]
          Length = 317

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 110/302 (36%), Positives = 162/302 (53%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+A A  LEDAGF V  ID        L   K D  F  LHG
Sbjct: 17  IAVLYGGNSAEREVSLNSGQAIAKGLEDAGFNVVLIDTKVVPLTDLVSNKIDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q  LE L+IPYT S +L S+LSMDK+RSKQ+  +CG+P  P  +VN+     
Sbjct: 77  RGGEDGCLQGALEYLDIPYTGSNVLGSSLSMDKVRSKQIFKACGIPTAPFTVVNKAEFST 136

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +    +    ++KP   GSS+G+   K    +   L    ++    Q+L+E ++DG
Sbjct: 137 LSLENILADLGGRVMVKPANEGSSIGMAQAKTIAQLRNAL--IEAFGFDTQVLLEAWIDG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD +L    +  P+   Y YE KY S ++ +  P  +      E++ L+  A
Sbjct: 195 PEYTVTILGDKALPAIHMETPREF-YDYEAKYQSTSTQYHCPCGLNERDENEIKSLSMKA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A G +G  R D +    + +   LE+N  PGMT  S+ P+ A   G +F EL+  +++
Sbjct: 254 FNATGAQGWGRVD-IMRNKTGEWQILEVNTVPGMTETSLVPKAAKVFGLNFSELVTQILQ 312

Query: 295 DA 296
            +
Sbjct: 313 LS 314


>gi|323706263|ref|ZP_08117830.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
 gi|323534427|gb|EGB24211.1| D-alanine/D-alanine ligase [Thermoanaerobacterium xylanolyticum
           LX-11]
          Length = 362

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 153/346 (44%), Gaps = 50/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E EVS  S  +  + ++   ++V  + + +     L              
Sbjct: 6   VAVLFGGQSGEHEVSRVSATSIINNIDREKYEVYMVGITKRGQWYLYSGDVDKIATGEWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG VQ ++ELLE+PY  
Sbjct: 66  KEAVPALIGPSTMYKGIIAFKDKSYEFYPIDVVFPVLHGPNGEDGTVQGLMELLEMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVI 130
             +L+S+L MDK+ SK++    G+P     +V R  ++               I  P  +
Sbjct: 126 PNVLSSSLCMDKVFSKRIFLESGIPTPKFTVVYRKNLNDVDKHEKIRSEISEKIGYPCFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI  +  +  +   L  ++ ++    +        IE +     +    V 
Sbjct: 186 KPANMGSSVGISKVHNEGELIDALKIAAKYDRKIIVEEGIDAREIECSVLGNDNPEASVA 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP  +FY Y+ KY    S   +PA IP    +E++ LA  A+ A+  RG++R DFL 
Sbjct: 246 GEIVPAHEFYDYDAKYFDEASKLFIPAPIPDAKMEEIRELAIKAYTALDVRGMARVDFLM 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  + KV+  E+N  PG T +S++P++   +G  + EL+  +++ A
Sbjct: 306 DKNTGKVYLNELNTIPGFTQISMYPKLWEASGKPYSELIDELIQLA 351


>gi|255066168|ref|ZP_05318023.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
 gi|255049713|gb|EET45177.1| D-alanine--D-alanine ligase B [Neisseria sicca ATCC 29256]
          Length = 304

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|312621719|ref|YP_004023332.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
 gi|312202186|gb|ADQ45513.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kronotskyensis
           2002]
          Length = 364

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 159/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDSKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVTEEIKDLAARIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ EIN  PG T +S++P++  ++   + +L+  ++  A
Sbjct: 306 TNKVYFNEINTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348


>gi|91785291|ref|YP_560497.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
 gi|123168042|sp|Q13TZ4|DDL_BURXL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91689245|gb|ABE32445.1| D-alanine--D-alanine ligase [Burkholderia xenovorans LB400]
          Length = 313

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +      +++E+ ++G
Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKFDRIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  D    ++ LA  A
Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLTADEEARLKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307


>gi|269213848|ref|ZP_05982990.2| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
 gi|269145191|gb|EEZ71609.1| D-alanine--D-alanine ligase B [Neisseria cinerea ATCC 14685]
          Length = 319

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L +     AFN+LHG
Sbjct: 22  VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKNQGFQTAFNILHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 82  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 141

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 142 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 200 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 258

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 259 IGAEGCVRVDFLRDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVDFADLCIEILKTA 316


>gi|312792764|ref|YP_004025687.1| d-alanine/d-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
 gi|312876811|ref|ZP_07736789.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|311796430|gb|EFR12781.1| D-alanine/D-alanine ligase [Caldicellulosiruptor lactoaceticus 6A]
 gi|312179904|gb|ADQ40074.1| D-alanine/D-alanine ligase [Caldicellulosiruptor kristjanssonii
           177R1B]
          Length = 364

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 89/343 (25%), Positives = 159/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG+S+E E+S+ S K+    ++   +++  I + +    +L   K          
Sbjct: 6   VAVLFGGVSTEHEISIVSAKSIMQNMDKEKYEIIPIGITKEGKWLLYTGKIEDLDNKWTQ 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  FSIECFISPDRTKKALVKIKDNEATFIDIDVVFPVLHGLNGEDGTVQGLLELSNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVIKPL 133
           G+L+SA+ MDK  +K++    G+P    ++V           F    +   S P  +KP 
Sbjct: 126 GVLSSAICMDKAFAKKLALLEGIPQGHFLVVYKNEYSAKKDYFIRRIESEFSYPVFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI   K  + + L + ++  ++    +        IE       +  +      
Sbjct: 186 NSGSSVGISKAKDREDLVLAIHEAFLYDTKILIEQAINAREIECAVLGNDEVFVSEPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P  +FYSYE KY   +S  ++PA++P ++ +E++ LA   ++   C G++R DF  D  
Sbjct: 246 IPSREFYSYEAKYIDNSSELIIPARLPKEVVEEIKDLAARIYKIFECCGMARVDFFVDKD 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV++ E+N  PG T +S++P++  ++   + +L+  ++  A
Sbjct: 306 TNKVYFNEVNTIPGFTSISMYPKLMEFSSIPYSQLIDKLISLA 348


>gi|241760206|ref|ZP_04758302.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
 gi|241319317|gb|EER55782.1| D-alanine--D-alanine ligase B [Neisseria flavescens SK114]
          Length = 304

 Score =  187 bits (474), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV   ++++  +   
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFVVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPVTEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DFL D    K++ LEIN  PGMT  S+ P+ A + G  F +L + +++ A
Sbjct: 244 IGADGCSRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFADLCIEILKTA 301


>gi|295106391|emb|CBL03934.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 315

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 113/303 (37%), Positives = 174/303 (57%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GGIS EREVSL+SG+    AL +AGF+V+ +D  D+     L     D+AF  LH
Sbjct: 12  VALLVGGISGEREVSLASGEGAHQALTEAGFQVTTLDPADKDDLKTLIDGGFDVAFICLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE++ +PY  SG+ +SAL+MDK++SK    + G+   PSI +      
Sbjct: 72  GKYGEDGTLQGMLEMIGLPYIGSGVWSSALAMDKVKSKVFYQAAGISTPPSITLGVNDTV 131

Query: 120 SQHLISP----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               I        V+K    GS+LG+ +++   +I   + ++      +++L+E+Y+ G 
Sbjct: 132 DVEEIVGSLGERCVVKSATEGSALGVFIVEGHDAIQEAIEKAR--ELDNEILVERYIKGK 189

Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V+G+ +         VP +DFY YE KY    S H+ PA +  +  +++Q +A  
Sbjct: 190 ELTVAVIGNDNPRALPIIEIVPVNDFYDYEAKYKPGASQHLCPAPLSEETTRQIQNMAVQ 249

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+ C G+SRSDF+ D      + LE N  PGMT  S+ P+ A  AG SF EL   ++
Sbjct: 250 AHKALECAGVSRSDFILDDE-GDWWILETNTIPGMTGTSLLPDAARAAGISFPELCTMLI 308

Query: 294 EDA 296
           E A
Sbjct: 309 EFA 311


>gi|15896148|ref|NP_349497.1| D-alanyl-alanine synthetase A [Clostridium acetobutylicum ATCC 824]
 gi|25452916|sp|Q97F58|DDL_CLOAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15025943|gb|AAK80837.1|AE007787_3 D-alanine-D-alanine ligase [Clostridium acetobutylicum ATCC 824]
 gi|325510303|gb|ADZ21939.1| D-alanine-D-alanine ligase [Clostridium acetobutylicum EA 2018]
          Length = 343

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 77/334 (23%), Positives = 155/334 (46%), Gaps = 37/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + +  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRVSAASVLRNIDTSKYDLFPIGITKKGEWFEYTGSADKIENGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +L+ +P     +L+S++ MD
Sbjct: 65  KDEFYKSPNGQAILFNKEVDVVFPVMHGLYGEDGTIQGLCKLVGVPCVGPSVLSSSVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+    +     ++V+               ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLEHFNIKQADYVVVHAHEYKTSKEEIIKEIENKLGYAVFIKPSNSGSSVGITK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               + +   L ++  ++    +        IE+      +    +    VP  +FY YE
Sbjct: 185 AHNRKELEAGLEEAMKYDRKILVEEALNAREIEVAVLGNEEPKAAIPGEIVPAKEFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY +  S  ++PA +  +  ++++ +A   ++A+ C G+SR DFL D  + +++  E+N
Sbjct: 245 AKYENAASKLLIPANLSNENLEKIKNIAIEVYKALDCSGMSRVDFLVDKDTTEMYLNEVN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             PG T +S++P++ A AG  + +L+  ++E A+
Sbjct: 305 TIPGFTSISMYPKLWAAAGKDYSKLIDELIELAA 338


>gi|261364822|ref|ZP_05977705.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
 gi|288566859|gb|EFC88419.1| D-alanine--D-alanine ligase B [Neisseria mucosa ATCC 25996]
          Length = 304

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGAAILNALKSKGIDAHAFDPKETPLAELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRALAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA+ G  F +L + +++ A
Sbjct: 244 IGADGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAHTGVDFADLCIEILKTA 301


>gi|150015470|ref|YP_001307724.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
 gi|189083037|sp|A6LQY8|DDL_CLOB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149901935|gb|ABR32768.1| D-alanine--D-alanine ligase [Clostridium beijerinckii NCIMB 8052]
          Length = 301

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 168/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+    +    ++V  I +D+   ++      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLQSGKSIIENINKEKYEVLPIVIDKKEDIINKSKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK V+ + G+   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDVSKSVLEANGIRTAPWINLRKGDNID 122

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            + I+    P V+KP  GGSS+   ++K+++ I   + ++  W    +++IE+++ G E+
Sbjct: 123 FNKINELGYPVVVKPTHGGSSVATFIVKEEKEIENCVSEAFKW--DSEVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +  L V     PK++F+ +  KY    +  ++  ++  +++KEV+++A   ++A
Sbjct: 181 TCPVYNNKMLPVI-AIKPKAEFFDFTSKYQDGGAEEIV-VELEAELHKEVEKMALETYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LEIN  PGMT  S+ P+ AA     F EL+  +++D+
Sbjct: 239 LKCEVYSRVDMIVTEE-GVPYILEINTLPGMTKNSLIPKSAAALNIGFSELIDMIIQDS 296


>gi|331270461|ref|YP_004396953.1| D-alanine--D-alanine ligase [Clostridium botulinum BKT015925]
 gi|329127011|gb|AEB76956.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium botulinum BKT015925]
          Length = 343

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 153/333 (45%), Gaps = 37/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDNIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL+IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLDIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + G+     ++V                ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               + +   L ++  ++    +        IE+      +         VP ++FY YE
Sbjct: 185 AHNREELEKGLSEALKFDRKVLVETALNAREIEVAVLGNDEPEAATPGEIVPANEFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KYS+  S  +LPA +     ++V+ LA   ++ + C G+SR DFL D  + +V+  EIN
Sbjct: 245 AKYSNAESKLLLPANLSEKKLEKVKELAIRIYKMLDCSGMSRVDFLVDKETEEVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P+M    G S+  L+  ++E A
Sbjct: 305 TIPGFTKISMYPKMWQAEGKSYGNLISEIIELA 337


>gi|15643029|ref|NP_228072.1| D-alanyl-alanine synthetase A [Thermotoga maritima MSB8]
 gi|170288487|ref|YP_001738725.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
 gi|6226593|sp|P46805|DDL_THEMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359217|sp|B1L9P4|DDL_THESQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4980755|gb|AAD35347.1|AE001708_15 D-alanine--D-alanine ligase [Thermotoga maritima MSB8]
 gi|170175990|gb|ACB09042.1| D-alanine--D-alanine ligase [Thermotoga sp. RQ2]
          Length = 303

 Score =  187 bits (473), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 3   VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAIL+ L I YT S   +S +  DK+ + + +      V     V      
Sbjct: 63  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDKLVTYRFLKG---TVEIPDFVEIKEFM 119

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P V+KP + GSS+G+ V + D+     L +         +++++Y+ G E+T 
Sbjct: 120 KTSPLGYPCVVKPRREGSSIGVFVCESDEEFQHALKEDLPRY--GSVIVQKYIPGREMTV 177

Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++               PK  FY Y  KY+   +  +LPA +     + V+ +A  A  
Sbjct: 178 SILETEKGFEILPVLELRPKRRFYDYVAKYTKGETEFILPAPLNPSEERLVKEMALKAFV 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GCRG  R D +F     + ++LEIN  PG+T  S  P  A   G  F EL+  +++ A
Sbjct: 238 EAGCRGFGRVDGIF--SDGRFYFLEINTVPGLTETSDLPASAKAGGIEFEELVEIILKSA 295


>gi|118581686|ref|YP_902936.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
 gi|190359200|sp|A1AU58|DDL_PELPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118504396|gb|ABL00879.1| D-alanine--D-alanine ligase [Pelobacter propionicus DSM 2379]
          Length = 310

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 120/299 (40%), Positives = 176/299 (58%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL+SG A   AL   GF    +DV R + LVL+      AF  LHG
Sbjct: 9   IAVLMGGLSAEREVSLASGAAVCQALVARGFDALSVDVARDLPLVLSREGIGAAFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +LEL+ IPYT SG+LASAL+M K+ SKQ   S G+   P     R    S
Sbjct: 69  RYGEDGCVQGLLELMAIPYTGSGVLASALAMHKLYSKQAFVSAGILTAPFHHFRRGERVS 128

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +S   P V+KP++ GSS+GI ++K++  +   +    ++ H D++L+EQ++ G E+ 
Sbjct: 129 LSHLSFGLPLVVKPVQEGSSVGISIVKEESQLAAAV--KLAFRHDDEILVEQFIKGQEVQ 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++ D  +      V +++FY +E KY+   + H  PA++   +Y+E  R+   AH A+
Sbjct: 187 VGILDDRPMGAI-EIVSRNEFYDFEAKYTDGMAEHFFPARLEKGLYEEALRVGLAAHHAL 245

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           GCR  SR D L  P   + + LE+N  PGMT +S+ PE  A  A   F EL+  ++  A
Sbjct: 246 GCRCYSRVDLLVTPA-GECYVLEVNTLPGMTALSLLPEIAAKGADLPFEELVERIILSA 303


>gi|149196275|ref|ZP_01873330.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
 gi|149140536|gb|EDM28934.1| D-alanylalanine synthetase [Lentisphaera araneosa HTCC2155]
          Length = 1029

 Score =  187 bits (473), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1    MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
            +AVL GG SSER +SL S +A A AL D G +V++ID+       ++    DL F VLHG
Sbjct: 732  IAVLKGGPSSERPISLQSAEAVAKALRDGGHEVTEIDITDFSLPAISK-DIDLVFPVLHG 790

Query: 61   NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             FGEDG VQ ++E    PY    I +S L +DK  +   + + G+PVC S+++     + 
Sbjct: 791  EFGEDGQVQKLIEGQGFPYVGCDITSSELCIDKDAAVCELRNSGLPVCDSVVLRSKDEEI 850

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               I+ P V+KP + GSS+ + +++K+  +   +  +    + D +L+E +  GIE T G
Sbjct: 851  SQNITLPCVVKPNRQGSSISLSLVEKEGDLRKAIDLAF--ENDDTVLVESFFKGIECTVG 908

Query: 181  VMGDASLDVTEIAVPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            ++   +L      +P   F+ Y+ KY+        +  P +IP D+ + +++    + + 
Sbjct: 909  LIDGKAL-SVVEIIPPEGFFDYDAKYTYSKGKTQYNCPPKEIPEDVSERLKKCGEESFKV 967

Query: 238  IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  R + R D +++P S K   LE N  PG T  S+ P+ A   G SF EL   + + A
Sbjct: 968  LKGRHLMRVDMIWNPDSDKFIILEANTMPGFTSSSLLPKAAKRDGISFTELCCGLAKKA 1026


>gi|187925440|ref|YP_001897082.1| D-alanine--D-alanine ligase [Burkholderia phytofirmans PsJN]
 gi|229463738|sp|B2SYX3|DDL_BURPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187716634|gb|ACD17858.1| D-alanine/D-alanine ligase [Burkholderia phytofirmans PsJN]
          Length = 313

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/295 (32%), Positives = 144/295 (48%), Gaps = 9/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIKYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +  +   +++E+ V+G
Sbjct: 132 ARSKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDKIVVVEKSVEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  D    ++ LA  A
Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|153875644|ref|ZP_02003354.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
 gi|152067892|gb|EDN66646.1| D-alanine--D-alanine ligase [Beggiatoa sp. PS]
          Length = 290

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 105/294 (35%), Positives = 159/294 (54%), Gaps = 6/294 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S+EREVSL SG+A  +AL         ID   ++   L     D AF  LHG  GE
Sbjct: 1   MGGHSAEREVSLKSGQAILAALLRQSVDAVGIDTAHNLVTQLTENSFDRAFIALHGRGGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQH 122
           DG +Q +LEL+ IPYT SG+LA AL+MDK R+KQ+    G+P   S  +  +        
Sbjct: 61  DGTIQGLLELMGIPYTGSGVLACALAMDKYRTKQLWQGIGLPTPASVLVQTDSDFNSIIE 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++KP   GSS+GI  +K    +   +  +S ++    ++ E Y+ G E T  ++
Sbjct: 121 KLGLPLMVKPSLEGSSVGITKVKNVDELASAVETASQFHCD--IIAEHYISGTEYTAAIL 178

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +L +  +  P+   Y +  KY+   ++++ P  +P    +E+Q +A  A  ++G +G
Sbjct: 179 HDTALPLIRLETPREF-YDFTAKYNDNQTSYICPCGLPEKQERELQEMAMQAFLSLGAKG 237

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             R DFL D  S K + +EIN+ PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 238 WGRVDFLCDETS-KPWLIEINIIPGMTDHSLVPMAAKQAGISFDELVLRILSQA 290


>gi|307719433|ref|YP_003874965.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
 gi|306533158|gb|ADN02692.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6192]
          Length = 364

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 102/339 (30%), Positives = 162/339 (47%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVS  S  A    L+   F+V  + +  +    L              
Sbjct: 9   IALLYGGRSGEHEVSCRSAAAIYEHLDRERFEVLPVGITHAGRWYLQREVRVKEGALEVA 68

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                L+ D  F ++HG FGEDG +Q +LE   + Y  +G+L S
Sbjct: 69  EDEGAVVWVVPGAGLWCGGEDLRVDCVFPIVHGTFGEDGTLQGLLEQAGVAYVGAGVLGS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSL 139
           AL MDK R+K V    G+P+ P ++V R ++   +         +  P  +KP +GGSS+
Sbjct: 129 ALGMDKDRAKAVWLQAGLPILPFMVVRRESLPPWNELAIQLRRRMEFPVFVKPARGGSSV 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI  +  ++ +        ++ +  +++IEQ ++  E+ CGV G+  +        +   
Sbjct: 189 GISKVHDERGLKKA--CELAFTYDSKIVIEQGIEAREIECGVWGNEDVRSFPPGEIIHTH 246

Query: 198 DFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +FY YE KY         +PA++  +  + V+ LA  A++A+ C G +R DFL D  +  
Sbjct: 247 EFYDYEAKYEDTEGLQLKIPAELTPEQQEYVRSLAEKAYRALECEGFARVDFLLDTETEV 306

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +  EIN  PG TPVS+FP MA  AG SF +LL  ++E 
Sbjct: 307 FYLNEINTLPGFTPVSMFPLMAQAAGISFPDLLTRLIEL 345


>gi|121535915|ref|ZP_01667711.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
 gi|121305486|gb|EAX46432.1| D-alanine--D-alanine ligase [Thermosinus carboxydivorans Nor1]
          Length = 316

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 103/305 (33%), Positives = 166/305 (54%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S+EREVSL++GKA   AL + G+    ID+D       L        FN +H
Sbjct: 6   IGVLMGGPSTEREVSLNTGKAILGALREKGYDAVGIDLDPPRFLEQLRENGVTFVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q  L+LL IPYT SG+LASAL+MDK  SK++  + G+P   + +  +    
Sbjct: 66  GKFGEDGALQGALDLLGIPYTGSGVLASALAMDKSISKRLFQAAGIPTPRAEIYTKADAK 125

Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                        P V+K    GSS+G+++++++  +   ++++    + D +++E ++ 
Sbjct: 126 RNLVAEIMQKFPIPLVVKAAAQGSSIGVVIVEEESQVQAAVVEAF--RYSDCIVVENFIK 183

Query: 174 GIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           G ELT  +       +      VP S  Y Y  KY+   + +++PA+I  +  + V+++A
Sbjct: 184 GKELTVAILGGEPLEVLPIIEIVPHSGRYDYHSKYTKGTTDYIIPARIDDNAAERVRQVA 243

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GCRG++R D + D      + LE+N  PGMT  S+ P+ AA AG SF +L   
Sbjct: 244 VAAFNLLGCRGVARVDIMLD-DDNNPYVLEVNTIPGMTATSLVPKAAAAAGISFADLCER 302

Query: 292 MVEDA 296
           ++  A
Sbjct: 303 ILLIA 307


>gi|154250263|ref|YP_001411088.1| D-alanyl-alanine synthetase A [Fervidobacterium nodosum Rt17-B1]
 gi|171769403|sp|A7HNE8|DDL_FERNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154154199|gb|ABS61431.1| D-alanine--D-alanine ligase [Fervidobacterium nodosum Rt17-B1]
          Length = 316

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 99/317 (31%), Positives = 157/317 (49%), Gaps = 23/317 (7%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG 60
            VL+GGIS ERE+S+ SGK  A AL + G  V +IDVD +    L+ LK  D  FN+LHG
Sbjct: 4   GVLLGGISREREISIRSGKRIAQALRNMGHVVDEIDVDDNFIYKLSELKKYDALFNILHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--------------CGVP 106
            FGEDG +QAIL+ + IPYT SG+  S ++ DK      V +                + 
Sbjct: 64  TFGEDGKMQAILDSIGIPYTGSGVETSVIAFDKYLCNLFVENTIERYEELSVVKIPNFLL 123

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +             +  I  P V+KP K GSS+G  +    + +   L         D++
Sbjct: 124 ISSEEFEESKIYMIEEKIGLPCVVKPRKEGSSIGTHICFSKEELLDALKNEFKNY--DEM 181

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++++Y+ G E+T  V+               PK  FY YE KY+   +  ++PA++  + 
Sbjct: 182 IVQEYIKGKEITVSVIDINGTPTVLPILELRPKKLFYDYEAKYTDGMTEFIIPAELDGET 241

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +++       ++++GC+  SR D +        ++LE+N  PGMT +S  P  A   G 
Sbjct: 242 TEKINHAVLKIYKSLGCKHFSRIDGIV--KDGVFYFLEVNTLPGMTELSDLPMSANAFGI 299

Query: 284 SFRELLLWMVEDASCLR 300
           SF EL+  ++++A C +
Sbjct: 300 SFDELVDLIIKEA-CRK 315


>gi|329298861|ref|ZP_08256197.1| D-alanine--D-alanine ligase [Plautia stali symbiont]
          Length = 306

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLMSGSAVLAGLREMGIDAHGVDTRDVSVLDLWQQGFAKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L++PYT SG++ASA++MDK+RSK +    G+P    + + R   + 
Sbjct: 65  RGGEDGTLQALLEFLQLPYTGSGVMASAITMDKLRSKLLWQGRGLPAGKFVWLTRQQYEQ 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  + + +++P  L    ++ H D +L+E +
Sbjct: 125 GLDASAQASIAALGLPLFVKPSCEGSSVGISRVNQAEALPAAL--QEAFRHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L         S+FY YE KY S ++ +  P+ +  +   E+Q L 
Sbjct: 183 LSGAEYTVGIVGDEILPSI-RIQTASEFYDYEAKYISDDTQYFCPSGLSAEKEAELQTLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GC G  R D + D        LE+N  PGMT  S+ P  A  AGYSF +L+  
Sbjct: 242 LAAWRALGCSGWGRVDVMVDG-DGNFQLLEVNTSPGMTSHSLVPMAAKQAGYSFPQLVAR 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|296160539|ref|ZP_06843355.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
 gi|295889288|gb|EFG69090.1| D-alanine/D-alanine ligase [Burkholderia sp. Ch1-1]
          Length = 313

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGVPTPPFETVLRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +      +++E+ ++G
Sbjct: 132 ARAKDIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKFDRIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  D    ++ LA  A
Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLAADEEARLKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNPYFLEVNTAPGMTDHSLPPKAARAVGISYQELVVAVL 307


>gi|295677760|ref|YP_003606284.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437603|gb|ADG16773.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 313

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +  +   +++E+ ++G
Sbjct: 132 ARAKEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDRIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  +    ++ LA  A
Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 250 FDVLGCTDWGRADFMLDG-DGKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|168185902|ref|ZP_02620537.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
 gi|169295873|gb|EDS78006.1| D-alanine--D-alanine ligase [Clostridium botulinum C str. Eklund]
          Length = 343

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 158/333 (47%), Gaps = 37/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRISASSVLKNIDLSKYDVYPIGITKDGRWFEYTGDIDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G++ASA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMASAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN     +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNKKTDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               Q +   L ++  ++    + +      IE+      +         VP ++FY YE
Sbjct: 185 AHNRQELESGLEEALKFDRKVLVEVALNAREIEVAVLGNDEPMAATPGEIVPANEFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KYS+  S  +LPA + L+  ++V+ LA    + + C G+SR DFL D  + +V+  EIN
Sbjct: 245 AKYSNAQSKLLLPANLSLEKLEKVKELAVKIFKMLDCAGMSRVDFLVDKETEEVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P+M    G ++ EL+  ++E A
Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337


>gi|304396565|ref|ZP_07378446.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304356074|gb|EFM20440.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 306

 Score =  186 bits (472), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 166/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     ID      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVIAGLREMGINAHGIDTRHVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R   + 
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFEG 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   +   +  P  +KP   GSS+GI  +    ++P  L    ++ + + +L+E +
Sbjct: 125 GLDEESNAAIAALGLPLFVKPACEGSSVGISRVNDLHALPAAL--EMAFKYDNDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L         S+FY YE KY S ++ +V PA++  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSI-EIKSASEFYDYEAKYISDDTQYVCPAELSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D    +   LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGE-GRFQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|292490627|ref|YP_003526066.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291579222|gb|ADE13679.1| D-alanine/D-alanine ligase [Nitrosococcus halophilus Nc4]
          Length = 316

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 156/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG A   AL   G     IDV   V   L+  + + AF  LHG
Sbjct: 13  VAVLMGGRSAEREISLKSGTAVLEALLRQGVDAQGIDVGERVLEQLSRGQFERAFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG++Q  LE L +PYT SG+L SAL+MDK+RSKQ+    G+P      +       
Sbjct: 73  RGGEDGVIQGALETLGLPYTGSGVLGSALAMDKLRSKQLWRGMGLPTADFSVLNEGTDLA 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSSLG+  +   +++        +      ++ EQ++ G E T
Sbjct: 133 LVVANLGLPLMVKPAREGSSLGMRKVDSIEALRAAY--REAMAFDGTVIAEQWLPGAEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +L +  +  P   FY +E KY +  + ++ P  +  +  + +Q LA  A QA+
Sbjct: 191 AAILTGRALPLIGLETP-RIFYDFEAKYLTDTTRYLCPCGLSEEQAQHLQALALQAFQAL 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF  D  + +   LE+N  PGMT  S+ P  A  AG  F +L+L ++E +
Sbjct: 250 GASGWGRVDFRCDAQA-RPCLLEVNTVPGMTAHSLVPMAAQAAGIEFDQLVLQILESS 306


>gi|120555361|ref|YP_959712.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
 gi|190359162|sp|A1U3F6|DDL_MARAV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120325210|gb|ABM19525.1| D-alanine--D-alanine ligase [Marinobacter aquaeolei VT8]
          Length = 325

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 156/297 (52%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV MGG S+EREVSL SGKA  +AL+ AG      D+   +   +     D  F  LHG
Sbjct: 25  VAVFMGGDSAEREVSLKSGKAVLAALQSAGIDAVGRDIQGCLLRTVDEPDFDRVFIALHG 84

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTM 118
             GEDG +QAIL    IPYT S +LASAL+MDK+R+K V   CG+P      +       
Sbjct: 85  RGGEDGTLQAILGQAGIPYTGSEVLASALAMDKLRTKYVFEGCGLPTPAFRAMTSVGEAE 144

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G  + K + +  L     ++    D +L+EQ+++G E T
Sbjct: 145 GIVAALGTPLSVKPAHEGSSIG--IRKVNSAAELAEAYEAAARLDDLVLVEQWIEGPEFT 202

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    ++   +  Y Y+ KY + ++ + +P  +  D    +Q LA  A + +
Sbjct: 203 VSLLQDKALPAIGLSTDHAF-YDYDAKYLADDTRYRIPCGLAPDDELRLQHLALDAFRVL 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCR   R D + D    + + LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 262 GCRTWGRVDIMQDRA-GEFWLLEVNTVPGMTDHSLVPMAAKAAGISFEELVVRILRD 317


>gi|262380535|ref|ZP_06073689.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
 gi|262297981|gb|EEY85896.1| D-alanine-D-alanine ligase B [Acinetobacter radioresistens SH164]
          Length = 311

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 166/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++     
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P++IKP+  GSS+G+  ++K +  P  L +++   H   ++ E++++G E T
Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFPEALAKAT--EHDAVVMAEKWINGREFT 185

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A QA
Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKMLQELALRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GC+G  R D + D      + LE+N  PGMT  S+ P+ A   GY F +L + ++E 
Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302


>gi|94312057|ref|YP_585267.1| D-alanine--D-alanine ligase [Cupriavidus metallidurans CH34]
 gi|190359208|sp|Q1LIM8|DDL_RALME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|93355909|gb|ABF09998.1| D-alanine:D-alanine ligase [Cupriavidus metallidurans CH34]
          Length = 327

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 158/304 (51%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGKSAEREISLLSGNGVLAALKSRGVDAHPFDPGLQPISELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASAL+MDK  +K++  + G+      ++   T   
Sbjct: 77  RYGEDGTMQGLLEQLGIPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLYANTDFD 136

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +     +++  +    ++ E ++DG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVIAADQMRAAFEKAAGLDAD--VIAETFIDGAELT 194

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+            V     Y Y+ KY + ++ ++ P+ +P  + +EV+ LA  A 
Sbjct: 195 CPIVGEGPTAEALPVIKIVAPESNYDYQNKYFTDDTQYLCPSTLPDALEREVRALAVEAF 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +      K + LE+N  PGMT  S+ P  A   G S+ + ++ ++  
Sbjct: 255 RVLGCRGWARADVMLT-RDGKPYLLEMNTSPGMTGHSLVPMAARANGISYEDFVMQVLAA 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 ATLD 317


>gi|302036135|ref|YP_003796457.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300604199|emb|CBK40531.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 332

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 157/306 (51%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSEREVSL +G+A   +L  +G+    IDV   +   L     ++ F  LHG
Sbjct: 17  IGVLMGGQSSEREVSLKTGEAVYRSLVRSGYDAVAIDVGPDLSKTLQEQAVEIGFLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +Q  LE L IPYT SG+ ASA+ M K+ +K  +++ G+PV    +V R     
Sbjct: 77  PGGEDGAIQGFLETLGIPYTGSGVRASAIGMHKVVTKTELAAQGIPVPRGTVVLRGMAPS 136

Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                S   +  P V+KP   GS++G+ +++K       L   ++  + ++ ++E ++ G
Sbjct: 137 LNRVLSTCKLKLPVVVKPASQGSTIGVTIVRKPSQWKEAL--RTAHRYDEEAMVEAFIPG 194

Query: 175 IELTCG----VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+T        G  +       V    FY +  KY    + ++ PA +   + +++++ 
Sbjct: 195 HEVTVSLLGGPDGVVTGLPAVEIVAPDGFYDFSAKYEKGRTQYLCPAPLSAAVTRQIKQF 254

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A   +QA+GC G +R DF   P   K F LEIN  PGMT  S+ P  A  AG S+  L  
Sbjct: 255 AIRTYQALGCSGAARVDFRVTPK-GKPFVLEINTVPGMTETSLLPMAAGKAGLSYDALTE 313

Query: 291 WMVEDA 296
            +++ A
Sbjct: 314 RILQSA 319


>gi|218248108|ref|YP_002373479.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8801]
 gi|226729271|sp|B7JZB2|DDL_CYAP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218168586|gb|ACK67323.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8801]
          Length = 351

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVSL+S KA A+AL+       + +  I + ++           VL  
Sbjct: 6   VGLLFGGRSGEHEVSLNSAKAIATALQSGENPQKYDIIPIYIQKNGVWQAGDTAQQVLND 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L S
Sbjct: 66  AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKG 135
           A+ MDK+  K   +  G+P    I V+R  +              +  +  P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQRLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++    +        +E       +    V      
Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDRRIVIETGVKAREVECAVLGNENPKASVIGEITY 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +   S+
Sbjct: 246 NSDFYDYEAKYTDGMAQMHIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVEDSQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +VF  EIN  PG T  S++P++    G  F EL+  +++ A
Sbjct: 306 EVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLA 346


>gi|253681038|ref|ZP_04861841.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
 gi|253562887|gb|EES92333.1| D-alanine--D-alanine ligase [Clostridium botulinum D str. 1873]
          Length = 343

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 85/333 (25%), Positives = 154/333 (46%), Gaps = 37/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VGILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGSVDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLNIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + G+     ++V                ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGIKQADYVVVTAHDYKTIKEDILTKIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               + +   L ++  ++    +        IE+      +         VP ++FY YE
Sbjct: 185 AHNREELEKGLSEALKFDRKILVETALNAREIEVAVLGNDEPKAATPGEIVPANEFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KYS+  S  +LPA +  +  ++V+ LA   ++ + C G+SR DFL D  + +V+  EIN
Sbjct: 245 AKYSNAESKLLLPANLTKEKLEKVKALAVRIYKMLDCAGMSRVDFLVDKETEEVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P+M    G ++ +L+  ++E A
Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGDLISEIIELA 337


>gi|319944696|ref|ZP_08018960.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
 gi|319741945|gb|EFV94368.1| D-alanine-D-alanine ligase B [Lautropia mirabilis ATCC 51599]
          Length = 334

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 154/302 (50%), Gaps = 7/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG SSER VSL SG+    AL+  G      D        L     D AF  LHG
Sbjct: 22  VVVLMGGHSSERNVSLDSGRNVLKALQAKGVNAEAFDPAERSLGDLEKAGYDRAFIALHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
            +GEDG +Q +LE+L IPYT SG++ASA+++DK+ +KQ+  +  +P  P  +        
Sbjct: 82  RYGEDGTIQGVLEMLGIPYTGSGVMASAVAIDKISTKQMWQAGRLPTPPWEVLLGPHQLA 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP   GS+LG+  +     +P    +++       +L E++V G ELT
Sbjct: 142 GLAERLGLPLIIKPPHEGSTLGLTRVDSLDRLPAAYERAADI--DFPVLAERFVQGRELT 199

Query: 179 CGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             V+G                +  Y Y  KY + ++ ++ PA +   +  ++  LA  A+
Sbjct: 200 VAVIGSGAAARALPIVEIRAPNGNYDYRNKYFTDDTRYLCPAPLVPAMAADIASLAEAAY 259

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+GC G  R D + D  +++ + LE+N  PGMT  S+ P  A  AG S+ +L+L +   
Sbjct: 260 RAVGCEGWGRVDIMLDDGTQRPWLLEVNTSPGMTGHSLVPMAARAAGISYEDLVLGLTAQ 319

Query: 296 AS 297
           AS
Sbjct: 320 AS 321


>gi|134299650|ref|YP_001113146.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
 gi|190359127|sp|A4J5G8|DDL_DESRM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134052350|gb|ABO50321.1| D-alanine--D-alanine ligase [Desulfotomaculum reducens MI-1]
          Length = 312

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 162/307 (52%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           + VL GG S+EREVSL SG+A   AL  AG+  V +IDV   +   L   +  +AF  LH
Sbjct: 5   IGVLCGGRSAEREVSLRSGEAVYQALMAAGYNDVVKIDVGYDLVEQLKGNEIQVAFLALH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q +LE+L+IPYT SG+LASAL+++K+ +K++    G+P     ++ +  ++
Sbjct: 65  GKYGEDGTIQGLLEMLDIPYTGSGVLASALAINKIATKKIFKMEGIPTPAFSVITKKEVE 124

Query: 120 SQ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            +  P V+K    GS++GI  +   + +   +  +  ++    +   
Sbjct: 125 DKSLQEAALRAIKEVGVPAVVKANTQGSTIGITFVHVKEKMAEAIESALKYDQDVLVEQF 184

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                +  +                  +  Y Y+ KY+   S H++P ++P DI ++++ 
Sbjct: 185 VAGTEVTASVLGNNSPEALPLIEITSVTGVYDYQSKYTPGMSDHIIPPRLPQDIQEKIKE 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  +  ++GCRG+ R DF+      + + LE+N  PGMT  S+FP+ A YAG SF EL 
Sbjct: 245 LAIKSFLSLGCRGLGRIDFII--RDNQPYALEVNTLPGMTATSLFPDAANYAGISFPELT 302

Query: 290 LWMVEDA 296
             +++ A
Sbjct: 303 DRLIKLA 309


>gi|209519097|ref|ZP_03267903.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
 gi|209500469|gb|EEA00519.1| D-alanine/D-alanine ligase [Burkholderia sp. H160]
          Length = 313

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 145/295 (49%), Gaps = 9/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGNSAEREVSLNSGRLVLQGLRDAGVDAHPFDPAERPLSALKEEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYE 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++P  L    +  +   +++E+ ++G
Sbjct: 132 ARAQEIVAKLGLPLFVKPASEGSSVAVIKVKSADALPAAL--IEAVKYDRIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  +    ++ LA  A
Sbjct: 190 GGEYTACIAGNLDLPVIRIVPAGEFYDYHAKYIANDTQYLIPCGLGAEEEARLKVLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +GC    R+DF+ D    K ++LE+N  PGMT  S+ P+ A   G S++EL+
Sbjct: 250 FDVLGCTDWGRADFMLDGE-GKPYFLEVNTAPGMTDHSLPPKAARAVGISYQELV 303


>gi|302874101|ref|YP_003842734.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689641|ref|ZP_07632087.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576958|gb|ADL50970.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 298

 Score =  186 bits (471), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 91/297 (30%), Positives = 141/297 (47%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSER VSL SG+     L    ++V  I +D    +V      D AF  LHG
Sbjct: 3   VGVIMGGISSERAVSLKSGEEVVKYLNRNKYEVIPIVIDSKKQVVEKVQGIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE LEIPY+   +L SA+ M+K  +K ++ +  +   P I V       
Sbjct: 63  KFGEDGTIQGILEALEIPYSGCSVLTSAICMNKGITKSLLQNANINTAPWITVKSVEEID 122

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I     P  IKP  GGSS+    +K +  +   +       +  +++IE+Y+ G E+
Sbjct: 123 YEKIKSLGYPVFIKPNNGGSSVATFCVKDEGEVEKAV--KEGLKYDTEVMIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++         I    S F+ Y  KY    +   +   +   +  +V  ++      
Sbjct: 181 TSFILNGEVFPTVMIETKSSGFFDYTAKYDDNGAEENV-VYLKEQLQSQVAEISKKIWDL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR  SR D +    +   + LE+N  PG+TP S+ P+ A   G  F ELL  +++
Sbjct: 240 LYCRSYSRVDMII--SNGIPYVLEVNTLPGLTPHSLIPKSAKAKGMEFSELLDKIIK 294


>gi|225677143|ref|ZP_03788142.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
 gi|225590810|gb|EEH12038.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Muscidifurax
           uniraptor]
          Length = 337

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 109/317 (34%), Positives = 167/317 (52%), Gaps = 21/317 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SG+A   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGRAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S  +      ++     + 
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSGVMASAVAMNKAMSKHIFWSLSIDTPKGYVISREDLLK 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   I  PYV+KP+  GSS+G+ ++   +               ++  +  Y+D  E   
Sbjct: 125 NNIKIDYPYVLKPINEGSSIGVHIVSSHEDYLKLKFDVIPARDQEKKTVSGYLDDKEGAT 184

Query: 180 GVMGDASLDV-------------------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +  D  +                     T    PK+ FY YE KY+   + H+ PA+IP
Sbjct: 185 SMTKDLMIVEEYIPGIELHTAVLLDEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIP 244

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA- 279
            +IYK     A   HQ +GC+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A  
Sbjct: 245 DNIYKMTLEHALKVHQFLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKL 304

Query: 280 YAGYSFRELLLWMVEDA 296
             G +F EL+  ++ED+
Sbjct: 305 AKGINFNELVKIIIEDS 321


>gi|221632100|ref|YP_002521321.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
 gi|221156428|gb|ACM05555.1| D-alanine--D-alanine ligase [Thermomicrobium roseum DSM 5159]
          Length = 372

 Score =  186 bits (471), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 160/348 (45%), Gaps = 54/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E +VSL S +A    ++   F++  + + R    ++              
Sbjct: 7   VAVIFGGQSGEHDVSLRSARAILRHIDRERFEIVPVGITREGRWLIGGDPLRELATASRL 66

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F VLHG +GEDG +Q +LEL  IPY
Sbjct: 67  PLELEPVSSGAGSAPATGESALALPGSLPGEIDVVFPVLHGPYGEDGTIQGLLELAGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVI 130
              G+LASA++MDK  +K++ +S G+     I         QH          +  P  +
Sbjct: 127 VGCGVLASAVAMDKPTAKRLFASVGLEQARWIAFTWHEWQCQHQTLLARIERELGYPCFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLD 188
           KP   GSS+G+   ++ + +   +  +S   +  ++++E+ +D  EL   V    +    
Sbjct: 187 KPANLGSSVGVSKARRREELLAAIELAS--RYDRRIVVEEAIDARELEVSVLGNEEPVAS 244

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    VP  +FY YE KY   +S  ++PA I  +    V+R+A  A + I   G++R DF
Sbjct: 245 IVGEIVPSREFYDYEAKYIDPHSQLLIPAPISEEQAATVRRMALEAFRVIDGAGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +  + ++   E+N  PG T +S++P++   +G  FR+L+  ++E A
Sbjct: 305 FLERSTGRILINEVNTIPGFTAISMYPKLWEASGLCFRDLITRLIELA 352


>gi|304315733|ref|YP_003850878.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777235|gb|ADL67794.1| D-alanine/D-alanine ligase [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 361

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 148/345 (42%), Gaps = 49/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E EVS  S  +  + ++   + V  + + +     L              
Sbjct: 6   VAVLFGGQSGEHEVSRVSATSIINNIDRDKYDVYMVGITKKGEWYLYNGDIEKIATGEWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG VQ +LELLE+PY  
Sbjct: 66  KDAVPALIGPSTKYKGILAFKDSRYEFYPIDVVFPVLHGPNGEDGTVQGLLELLEMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLISPPYVIK 131
             +L+S+L MDK+ SK++    G+P              +            I  P  +K
Sbjct: 126 PNVLSSSLCMDKVFSKRIFLEAGIPTPKFTVVYRKELNNVDNYEEIRRRVSEIGYPCFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +  +   L  +S ++    +        IE +     +    +  
Sbjct: 186 PANMGSSVGITKVHNENELMDGLKLASKYDRKIIIEEGIDAREIECSVLGNDNPEASIAG 245

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VP  +FY Y+ KY    S   +PA IP    +E++ LA  A+ A+  RG++R DFL D
Sbjct: 246 EIVPAHEFYDYDAKYFDEASKLFIPAPIPDVKMEEIRELAIKAYIALDVRGMARVDFLMD 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + KV+  E+N  PG T +S++P++   +G  + +L+  +++ A
Sbjct: 306 KNTGKVYLNELNTIPGFTKISMYPKLWEASGKPYSKLIDDLIQLA 350


>gi|189485639|ref|YP_001956580.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
 gi|170287598|dbj|BAG14119.1| D-alanine-D-alanine ligase [uncultured Termite group 1 bacterium
           phylotype Rs-D17]
          Length = 306

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 108/296 (36%), Positives = 164/296 (55%), Gaps = 5/296 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+SSERE+S+ SGKA  +  +     V  IDV+RS+   +   K D+A+  LHG
Sbjct: 15  IGVLYGGLSSEREISIKSGKAVLNVFKKLKLNVCGIDVNRSIAEEIKKEKIDVAYIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L IPYT SGI ASA S+DK  SK++     +      ++ +F    
Sbjct: 75  PMGEDGTIQGMLEILGIPYTGSGIFASAASIDKDVSKKIFKYADILTPEWKMLKKFGTVP 134

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P V+KP+  GS++G+ ++K+       +     + +GD+ LIEQ+++G E+T G
Sbjct: 135 EIK-KYPVVVKPVSQGSTIGVAIVKRPSEFAAAV--KEVFKYGDEALIEQFIEGKEVTVG 191

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +       VPK  FY ++ KY    S H++PA I  + Y+ VQ  A   ++   C
Sbjct: 192 VLNGKA-LPVVEIVPKGKFYDFKAKYQKGGSQHIIPAGISEEAYETVQNYAEKVYEIFKC 250

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R I R D + D    +V+  E N  PGMT  S+ P+ +   GYSF  L+L + E A
Sbjct: 251 RAICRVDMIVDRKD-RVWVFENNTIPGMTETSLVPDESRAVGYSFESLVLKITESA 305


>gi|89902192|ref|YP_524663.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
 gi|123091124|sp|Q21SX1|DDL_RHOFD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|89346929|gb|ABD71132.1| D-alanine--D-alanine ligase [Rhodoferax ferrireducens T118]
          Length = 346

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/304 (34%), Positives = 156/304 (51%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG+    AL   G      D        L        F  LHG
Sbjct: 29  VAVLMGGASAEREVSLMSGQGVLQALISQGVDAHAFDPAERDLAELKVEGFSHCFIALHG 88

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K++  S G+P      V+     S
Sbjct: 89  RFGEDGTVQGALELLGIPYTGSGVMASSIAIDKVMTKRIWRSEGLPTPEWRQVDSAAATS 148

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +   +   P ++KP + GS++G+  + + +        ++   H   +L EQ+V G E+T
Sbjct: 149 EAFAALGSPMIVKPDREGSTIGLTKVTQIEQCGAAYALAA--RHDAMVLCEQFVKGDEVT 206

Query: 179 CG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                    A        V     Y Y+ KY +  + +++PA +P      +Q+LA  A+
Sbjct: 207 IPLLGSGAGAHALPVIRIVAPDGNYDYQNKYFTDTTQYLVPANLPAGEEAHIQQLALKAY 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +GCRG +R D + D  +R  F LEIN  PGMTP S+ P  A  AG S+  L L ++  
Sbjct: 267 QVLGCRGWARVDVMIDARTRAPFLLEINTSPGMTPHSLVPMAAKAAGVSYPALCLEVLRH 326

Query: 296 ASCL 299
           A+  
Sbjct: 327 ATLD 330


>gi|294085898|ref|YP_003552658.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292665473|gb|ADE40574.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 302

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 118/299 (39%), Positives = 177/299 (59%), Gaps = 5/299 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG +SE  VS  S   C  A   AG+   +++VDR +   LA +KPD  FN LHG
Sbjct: 8   VAVLMGGWTSEASVSRVSASFCGQAARSAGWDAVEVEVDRDIAEKLAEMKPDRCFNALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L ++ IPYTHSG++ASAL+MDK+ +K ++++CG+ V  ++ +   T   
Sbjct: 68  QVGEDGNIQGLLNIMNIPYTHSGLVASALAMDKVLAKMIMTTCGIRVPATLALVEDTHVY 127

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                  +VIKPL  GSS G++++K     P      S WN   QLL E ++ G ELT  
Sbjct: 128 PEHAMQAHVIKPLNDGSSFGVVIVKDGDKAPA----RSLWNTDTQLLCEPFIPGRELTVA 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+   +L        ++ FY ++ KY+   S H+LPA IP D+  +    A  A++A GC
Sbjct: 184 VLEGTALC-VTEITSENSFYDFDAKYAPGGSQHILPADIPEDVTLQACEWAESAYRAFGC 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+ R+D+ ++ ++ ++F LEIN QPGMT  S+ PE A + G +  EL+  ++E A C 
Sbjct: 243 RGVIRADYRWNDVTNQLFMLEINTQPGMTATSLVPEQARFVGMTGEELVNHLLETAQCD 301


>gi|225077392|ref|ZP_03720591.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
 gi|224951276|gb|EEG32485.1| hypothetical protein NEIFLAOT_02453 [Neisseria flavescens
           NRL30031/H210]
          Length = 304

 Score =  185 bits (470), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 161/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSEREVSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREVSLDSGAAILAALKSKGVDAHAFDPKETPLSELKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q  LEL+ IPYT SG+ ASAL MDK R K +  + G+PV    +++  +   
Sbjct: 67  TFGEDGAIQGALELMGIPYTGSGVAASALGMDKYRCKLIWQAVGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPASEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPAAEFYDYEAKYNRDDTVYQCPSEDLSEAEENLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G SR DFL D +  K++ LEIN  PGMT  S+ P+ A + G  F +L + +++ A
Sbjct: 244 IGADGCSRVDFLKD-MDGKLYLLEINTLPGMTSHSLVPKSAGHTGVDFTDLCIEILKTA 301


>gi|118602742|ref|YP_903957.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|190359230|sp|A1AX29|DDL_RUTMC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118567681|gb|ABL02486.1| D-alanine--D-alanine ligase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
          Length = 293

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 98/295 (33%), Positives = 144/295 (48%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER VSL SG+A   AL +      + D        L   + D AF VLHG
Sbjct: 2   IAVLMGGNSAERAVSLKSGEAVYQALINQNINCFEFDWHGYNLSELWQQEFDQAFIVLHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS   +DK R+K +     + + PSI+ +      
Sbjct: 62  RGGEDGYIQKQLENRCIRYTGSDSNASHNGIDKARTKIIWKQHNLTLAPSIVASIHKPIE 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+++KP   GSS+GI  +     +   L    +W +    LIEQ+++G E T  
Sbjct: 122 PIDFPLPWMVKPTLEGSSIGISKVDSQIQLNNAL--MLAWQYNSHALIEQWIEGDEYTVA 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +       +    FY YE KY S    ++ P  +     + +Q +A  A  AI  
Sbjct: 180 ILGDKA-LPVVKIITDQGFYDYESKYHSNKIQYLCPCGLSSSQEQVLQVIALKAFFAINA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L++ ++ +
Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAMGMSFNKLVVAIINE 292


>gi|194290811|ref|YP_002006718.1| d-alanine--d-alanine ligase [Cupriavidus taiwanensis LMG 19424]
 gi|229463747|sp|B3R6V7|DDL_CUPTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193224646|emb|CAQ70657.1| D-alanine-D-alanine ligase B, affects cell division [Cupriavidus
           taiwanensis LMG 19424]
          Length = 327

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 157/304 (51%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQGVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASAL+MDK  +K++  + G+      +++  T   
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASALAMDKQATKRLWMTHGLATPRFAMLHADTDFD 136

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +        +    + ++ E +VDG ELT
Sbjct: 137 AVVADLGLPLIVKPAREGSSIGLTKVTAADQMRAAF--DKAAALDNDVIAETFVDGAELT 194

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C V+G+            V     Y Y+ KY + ++ ++ P+ +  ++ ++VQ LA  A+
Sbjct: 195 CPVVGEGDTAEALPVIRIVAPEANYDYQNKYFTDDTQYLCPSGLDAEVERQVQALAVQAY 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +        F LE+N  PGMT  S+ P  A   G S+ + +L ++  
Sbjct: 255 RVLGCRGWARADVML-RADGTPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVLQVLAA 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 ATLD 317


>gi|158319344|ref|YP_001511851.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158139543|gb|ABW17855.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 368

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 86/354 (24%), Positives = 157/354 (44%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EVSL S  +   A+    + ++ + + +     L              
Sbjct: 6   VMVVFGGRSGEHEVSLMSATSVLRAMNKEKYNITTVGITKKGIWKLYRGSIDKIQSGEWE 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               K D+ F VLHG FGEDG +Q + E
Sbjct: 66  GIADNWAKENNFSTNISVLPSEEGKGIINFGDGKTEKIDVVFPVLHGPFGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLI 124
           ++ IPY  +G+LAS+L+MDK  SK++    G+P                       +   
Sbjct: 126 MMNIPYVGTGVLASSLAMDKAMSKKLFELEGIPQAKYHAFLVKEYKENEKEVLDTIEEKF 185

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           + P  +KP   GSS+GI  +   + +   +  ++   +  ++++E+ ++G E+ C V+G+
Sbjct: 186 TYPVFVKPANMGSSVGITKVHNREKLEKAIELAA--KYDRKIVVEEGINGREIECSVLGN 243

Query: 185 ASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                +     +P ++FY Y  KY +  S   +PA +P D+ + ++ L+   ++ + C G
Sbjct: 244 DEPIASLPAEIIPSAEFYDYNDKYFAGTSKFEIPANLPEDVIEGIRSLSVKVYKLLDCSG 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR D   +  S ++   E+N  PG T +S++P+M    G  + EL+  ++E A
Sbjct: 304 LSRVDCFIERDSNRILLNEVNTMPGFTQISMYPKMWEATGIEYEELIDRLIELA 357


>gi|304413645|ref|ZP_07395089.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
 gi|304283736|gb|EFL92130.1| D-alanine:D-alanine ligase [Candidatus Regiella insecticola LSR1]
          Length = 328

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 156/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A    L +AG     +D        L        F  LHG
Sbjct: 27  IAVLLGGTSAEREISLLSGQAVLKGLIEAGIDAHAVDTRDVPVTQLKEQGFSKVFIALHG 86

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG +Q  L  L++PYT S   +SALSMDK+++K    S G+P+ P + +       
Sbjct: 87  RGGEDGSLQKQLASLQLPYTGSHAASSALSMDKLQTKLRWQSLGLPIAPHVALTSQQFAA 146

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSSLG+  +     +P  L    ++ + +++LIE++
Sbjct: 147 LSSGELARQIADLGFPLIVKPSHEGSSLGMSKVNAFNELPPSL--EKAFRYDEEVLIEKW 204

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+ +L    I  P   FY Y+ KY S  + +  P+ +     +++  LA
Sbjct: 205 LSGSEFTVAILGEQTLPSIRIQAP-GIFYDYDAKYLSNQTHYFCPSGLNEKQEQQLAALA 263

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A+QA+GC G  R D + D  +   + LE+N  PGMT  S+ P  A   G +F +L++ 
Sbjct: 264 KQAYQALGCSGWGRVDVMQDSDAN-FYLLEVNTSPGMTEHSLVPMAARQYGLNFSQLVVQ 322

Query: 292 MVEDA 296
           ++  A
Sbjct: 323 ILALA 327


>gi|325266251|ref|ZP_08132930.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
 gi|324982213|gb|EGC17846.1| D-alanine-D-alanine ligase B [Kingella denitrificans ATCC 33394]
          Length = 308

 Score =  185 bits (470), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 164/303 (54%), Gaps = 5/303 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SGKA   AL+  G      D        L     D+AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLISGKAILEALQSRGVDAHAFDPAEMELSELKTQNFDMAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LE L IPYT  G+LASAL MDK R K + S+ G+PV P  +++  +  +
Sbjct: 67  TYGEDGTVQGALEALGIPYTGCGVLASALGMDKYRCKLIWSALGLPVPPFEVLHDDSDFA 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  IKP   GSS+G++ IK+   +     Q         +L EQ++ G E T
Sbjct: 127 AVEQKLGLPLFIKPAAEGSSVGVVKIKQAGELAQQYAQLRDMGLHGVILAEQFMSGGEYT 186

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           CGV    +L      +P+++FY YE KY   ++ ++ P+ +  +  + +Q LA  A  AI
Sbjct: 187 CGVFNGKALPSIH-IIPQTEFYDYEAKYLRDDTVYLCPSDLSGEDERTMQHLAQEAFAAI 245

Query: 239 GCRG-ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G    + R DFL D     ++ LE N  PGMT  S+ P+ A   G SF +L + ++++A 
Sbjct: 246 GGGNTLGRIDFLKDSA-GCLYILEANTLPGMTSHSLIPKSALQIGISFADLCIAVLQNAQ 304

Query: 298 CLR 300
             R
Sbjct: 305 DER 307


>gi|325123864|gb|ADY83387.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus PHEA-2]
          Length = 308

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 158/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T  
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKNLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|90410346|ref|ZP_01218362.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
 gi|90328587|gb|EAS44871.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           3TCK]
          Length = 304

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 167/301 (55%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+   +A+E  G +   ID       ++   K D  F  LHG
Sbjct: 3   IGVLLGGESSERSVSLKSGECVVNAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++     
Sbjct: 63  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPMD 122

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                      P V+KP+  G S+G+  +  +  +   +   +++ + D +LIE ++ G 
Sbjct: 123 DIKAQLLSVVCPVVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFIAGR 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+   +L + +I      F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  A+
Sbjct: 181 EYTCAVLNGEALPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQVLALNAY 238

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG  R D + D  S  VF +E+N  PGMT  S+FP  A  AG SF +++  +++ 
Sbjct: 239 NALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFEQVISSLLDS 297

Query: 296 A 296
           A
Sbjct: 298 A 298


>gi|254521243|ref|ZP_05133298.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
 gi|219718834|gb|EED37359.1| D-alanine--D-alanine ligase B [Stenotrophomonas sp. SKA14]
          Length = 320

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 117/298 (39%), Positives = 169/298 (56%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++  VLA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQARGIDAFAVDGIPALAKVLAAGGVDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V+  T+
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVDSSTV 139

Query: 119 DS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HVLAAELGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVVGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L      VPK  +Y Y  KY + ++ ++ P     D  + ++R+A  A +A
Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGADEDE-IRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ AA AG  F EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRASGRFFLLEVNTAPGMTSHSLVPKAAAQAGIGFEELVWRVLEQ 313


>gi|255525501|ref|ZP_05392437.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
 gi|255510769|gb|EET87073.1| D-alanine/D-alanine ligase [Clostridium carboxidivorans P7]
          Length = 300

 Score =  185 bits (469), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK          ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVKYFNKEKYEVVPIVIDKKDDIIAKAKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG++QA+LE ++IPY+  G L S + MDK  +K+++ S G+     + V       
Sbjct: 63  KFGEDGIIQAVLETMDIPYSGCGPLTSGICMDKDITKKLLRSAGINTADWLSVKSVEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+   +IKK Q I   +    + ++  +++IE+Y+ G E+
Sbjct: 123 YDFIEKMEYPVVVKPNCGGSSVATNIIKKKQDIESAV--RLALDYDTEVMIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +M    +       PK++F+ Y  KY+   S  ++  +    +  +++ +A    + 
Sbjct: 181 TCCIMNG-KVLPIIAIKPKAEFFDYTAKYADGGSDEII-VQFEEGLQNKIEEMALKCWKV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A     S+ +LL  + E
Sbjct: 239 LKCSVYVRVDMII--KEGVPYVLELNTLPGMTKNSLFPKSAKAVNMSYTDLLDKITE 293


>gi|83648520|ref|YP_436955.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636563|gb|ABC32530.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 315

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 102/297 (34%), Positives = 162/297 (54%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG    +AL + G     +D  R     L     D  F VLHG
Sbjct: 20  VAVLFGGASAERDVSLKSGGQVLAALRNVGVDCFHVDP-RDGLQPLLDGDFDRVFIVLHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L LL  PYT S +LASAL+MDK+R+KQ+  + G+P     +++  +   
Sbjct: 79  RGGEDGTMQGLLTLLNKPYTGSDVLASALAMDKLRTKQLWETMGIPTPKYAVLDAGSDWE 138

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +       P ++KP+  GSS+G+  +   + +    L+++       ++ EQ++ G E
Sbjct: 139 AIVTEVGAGQPLMVKPVHEGSSIGMRRVVTAEELEAAYLEAA--KFDSVVIAEQWITGAE 196

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++G+ +L   ++      FY YE KY   ++ ++LP  +P D   E++ LA  A++
Sbjct: 197 YTVSILGEDALPAIKLET-DRQFYDYEAKYVVNDTRYILPCGLPQDKEDELKTLALRAYR 255

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AIGC G  R D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+L ++
Sbjct: 256 AIGCSGWGRVDIMCDAA-GQPWLLEVNTVPGMTDHSLVPMAAKASGLSFEQLVLSIL 311


>gi|269838014|ref|YP_003320242.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
 gi|269787277|gb|ACZ39420.1| D-alanine/D-alanine ligase [Sphaerobacter thermophilus DSM 20745]
          Length = 375

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/355 (27%), Positives = 164/355 (46%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHL------ 49
           + V+ GG S E +VSL S +A   A++   F+V  I + R    +     L  L      
Sbjct: 10  VGVIFGGRSGEHDVSLRSAQAILRAIDRERFEVVPIGITREGRWLSGGDPLRQLAATSRL 69

Query: 50  -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72
                                                + D+ F VLHG +GEDG VQ +L
Sbjct: 70  ALAPGDDPPAEESDLGSALAVPETGHAVEVAGAGVVQQLDVVFPVLHGPYGEDGTVQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           EL ++PY  +G+L SA+SMDK+ +KQ+    G+PV P + V R   +          +  
Sbjct: 130 ELADVPYVGAGVLGSAVSMDKVVAKQLFEREGLPVAPWLWVTRRQWERDPEGVAARVERE 189

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           +  P  +KP   GSS+G+  +     +P  + +++   +  +L++E+ +D  EL   V  
Sbjct: 190 LGYPCFVKPANLGSSVGVSKVHHPGELPGAMEEAA--RYDRKLVVERGIDARELEVSVLG 247

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +    V     P ++FY Y+ KY    S  ++PA I  +    V+ +A  A + +   
Sbjct: 248 NDEPITSVVGEIRPVNEFYDYQAKYVDEGSELLVPAPITQEQSDTVREMAVRAFKVVDAA 307

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF  +  +  ++  EIN  PG T +S++P +   +G SFREL+  ++E A
Sbjct: 308 GMARVDFFLERNTGTIYINEINTIPGFTQISMYPILWEASGLSFRELVSRLIELA 362


>gi|320335437|ref|YP_004172148.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
 gi|319756726|gb|ADV68483.1| D-alanine--D-alanine ligase [Deinococcus maricopensis DSM 21211]
          Length = 343

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/335 (29%), Positives = 158/335 (47%), Gaps = 39/335 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44
           +L GG S E EVSLSS +   +AL    F+V+ + + +                      
Sbjct: 11  LLAGGQSGEHEVSLSSARGVLAALPKDRFEVTPLVISKEGRWLPPADTTRALEAGVAETG 70

Query: 45  -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                  V      D+ F +LHG  GEDG VQ +L L  IP+  SG+L SA SMDK  +K
Sbjct: 71  GDLMLRGVADAASFDVVFPLLHGPNGEDGTVQGLLTLAGIPFVGSGVLGSAASMDKAMTK 130

Query: 98  QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           QV+++ G+P  P  L+ R  +             +  P  +KP   GSS+GI  ++ +  
Sbjct: 131 QVLAAHGIPQVPWRLLTRAQVRRDPAAALTAARELGFPLFVKPANMGSSVGISKVRGEDE 190

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   L ++    H  ++++E    G                          +DFY YE K
Sbjct: 191 LDGALREAF--AHDRRVVLEAMTQGKPRELEVGILGNDAPMASPVGELRFDADFYDYETK 248

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y+   +T  +PA +P  + ++V+  A  A +A+ C G++R DF ++  + +V+  E+N  
Sbjct: 249 YTEGRATMHIPADVPHAVAEQVRTYALAAFRALDCAGLARIDFFYEAATGQVYLNEVNTM 308

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           PG TP S++P + A AG S+ +L+  +VE A+  R
Sbjct: 309 PGFTPTSMYPNLWAAAGLSYADLVTRLVELATEDR 343


>gi|167036618|ref|YP_001664196.1| D-alanyl-alanine synthetase A [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|167039269|ref|YP_001662254.1| D-alanyl-alanine synthetase A [Thermoanaerobacter sp. X514]
 gi|300913909|ref|ZP_07131226.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307725406|ref|YP_003905157.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|320115045|ref|YP_004185204.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|190359215|sp|B0KBI1|DDL_THEP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359216|sp|B0K485|DDL_THEPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166853509|gb|ABY91918.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|166855452|gb|ABY93860.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|300890594|gb|EFK85739.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307582467|gb|ADN55866.1| D-alanine/D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|319928136|gb|ADV78821.1| D-alanine/D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 359

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 158/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  + + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMVGITKKGEWYLYRGDVGKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL++PY  
Sbjct: 66  KEGIPAIMGASTKYRGIITFEDGENGFYPIDVVFPVLHGPNGEDGTIQGLLELLDMPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------RFTMDSQHLISPPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V                 +  P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYGKEIEDLEAIKKKIEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  +  ++ +P  L  ++ ++    +        IE +     +    +    V
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPEASIAGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P ++FY Y  KY     + + +PA +P +  +EV++LA  A++A+  RG++R DFL D  
Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRKLAIKAYKALDLRGMARVDFLMDRN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  ++  E+N  PG T +S++P++   +G S+  LL  ++  A
Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWESSGKSYSTLLDELINLA 348


>gi|308185661|ref|YP_003929792.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
 gi|308056171|gb|ADO08343.1| D-alanine:D-alanine ligase B [Pantoea vagans C9-1]
          Length = 306

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 112/305 (36%), Positives = 165/305 (54%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL+SG+A  + L + G     +D      L L       AF  LHG
Sbjct: 5   VAVLMGGTSAEREVSLNSGQAVVAGLREMGINAHGVDTRDVSVLTLKEQGFTKAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R   D 
Sbjct: 65  RGGEDGTMQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPSGKFVWLTRQQFDA 124

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                   +   +  P  +KP   GSS+GI  +    ++P  L    ++ H D +L+E +
Sbjct: 125 GLDAESNAAIAALGLPLFVKPACEGSSVGISRVNDLSALPAAL--DMAFKHDDDVLVEAF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++GD  L         S+FY YE KY S ++ +V PA +  +   E+Q+L 
Sbjct: 183 LSGAEYTVAIVGDRILPSI-EIKSASEFYDYEAKYISDDTQYVCPADLSAEREAELQQLV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A +A+GCRG  R D + D    +   LE N  PGMT  S+ P  A  AG SF +L+  
Sbjct: 242 LAAWRALGCRGWGRVDVMTDGE-GRFQLLEANTSPGMTSHSLVPMAAKQAGMSFPQLVAH 300

Query: 292 MVEDA 296
           ++E A
Sbjct: 301 ILELA 305


>gi|113869224|ref|YP_727713.1| D-alanine--D-alanine ligase [Ralstonia eutropha H16]
 gi|123133594|sp|Q0K6M6|DDL_RALEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113528000|emb|CAJ94345.1| D-Alanine-D-Alanine ligase [Ralstonia eutropha H16]
          Length = 327

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 158/304 (51%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG S+ERE+SL SG    +AL+  G      D        LA    D  F  LHG
Sbjct: 17  VGVLLGGRSAEREISLMSGNGVLAALQSRGVDAHGFDPGLQSVAELAAAGFDRVFIALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L +PYT SG+LASA++MDK  +K++  + G+      +++  T   
Sbjct: 77  RYGEDGTIQGLLEQLGVPYTGSGVLASAMAMDKQATKRLWMTYGLATPRFAMLHADTDFD 136

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP + GSS+G+  +     +        +    + ++ E ++DG ELT
Sbjct: 137 AVAADLGLPLIVKPAREGSSIGLTKVTAADQMRAAF--EKAAALDNDVIAETFIDGAELT 194

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           C ++G+            V     Y Y+ KY + ++ ++ P+ +  ++ +EV+ LA  ++
Sbjct: 195 CPIVGEGDSAEALPVIRIVAPEANYDYQNKYFTDDTQYLCPSGLDPEVEREVRALAVQSY 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + +GCRG +R+D +      K F LE+N  PGMT  S+ P  A   G S+ + ++ +V  
Sbjct: 255 RVLGCRGWARADLML-RADGKPFLLEMNTSPGMTGHSLVPMAARAVGISYEDFVMQVVAA 313

Query: 296 ASCL 299
           A+  
Sbjct: 314 ATLD 317


>gi|187934805|ref|YP_001887261.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
 gi|229463743|sp|B2TPY4|DDL_CLOBB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|187722958|gb|ACD24179.1| D-alanine--D-alanine ligase [Clostridium botulinum B str. Eklund
           17B]
          Length = 301

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 168/299 (56%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ++L+ LEIPY+  G L+S++ MDK  SK ++ +  +   P I + R    +
Sbjct: 63  QFGEDGTVQSVLQTLEIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRRNDKIN 122

Query: 121 QHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I     P V+KP  GGSS+   +IK+++ I   + ++  W    +++IE+++ G E+
Sbjct: 123 YEKIEGMGYPVVVKPTHGGSSVATFIIKEEKDIKNAVTEAFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V     +       PK++F+ +  KY+   S   +  ++P ++++EV+ +A   ++A
Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKELHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFSELIDMIIDES 296


>gi|198242528|ref|YP_002214082.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197937044|gb|ACH74377.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|326621826|gb|EGE28171.1| D-alanine--D-alanine ligase B [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 285

 Score =  185 bits (469), Expect = 7e-45,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 16/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                                   L S L                       ++      
Sbjct: 65  RGV------------MASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEKGLSEEQKAR 112

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE+++ G E T  
Sbjct: 113 ISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKWLCGPEFTVA 170

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+  L       P   FY YE KY S  + +  PA +       +Q L   A +A+GC
Sbjct: 171 IVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLDASQEAALQSLVLQAWKALGC 229

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ ++E A
Sbjct: 230 TGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 284


>gi|150392272|ref|YP_001322321.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149952134|gb|ABR50662.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 366

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 87/354 (24%), Positives = 162/354 (45%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EVSL S  +   A+    + +  + + ++    L              
Sbjct: 6   VMVIFGGQSGEHEVSLMSAASVMGAINKEKYHIIPVGIAKNGDWKLFNGSVEEIESGDWE 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               K D+ F VLHG +GEDG +Q + E
Sbjct: 66  QSINELTEKGEDNKKFSLLPLTDGKQGIVLQNGEVKKIDVIFPVLHGPYGEDGRIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------I 124
           +++IPY   G++ASA++MDK+ +K+V+ +  +   P  ++         L          
Sbjct: 126 MIDIPYVGCGVMASAVAMDKVITKKVLEAEKIAQTPYQVIYGRRFQLDPLKYLNDLEATF 185

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--M 182
             P  +KP   GSS+GI   K  +++ + + ++    + ++++IE +V+G E+ C V   
Sbjct: 186 EYPVFVKPANMGSSVGISKAKNREALKIAIKEAG--KYDNKIVIEAFVEGREIECAVLGN 243

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               + +    +P  +FY Y  KY    S +V+P  +  ++ +E+Q LA   ++ + CRG
Sbjct: 244 EAPRVALPAEIIPSHEFYDYHDKYFDGTSRYVIPPDLSEELIQEIQHLAIQTYELLDCRG 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR DF  +  + +V   E+N  PG T +S++P+M    G  + +L+  +++ A
Sbjct: 304 LSRIDFFVENETNRVLVNEVNTMPGFTKISMYPKMWEATGLPYDKLIDELIQLA 357


>gi|331007263|ref|ZP_08330466.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
 gi|330418912|gb|EGG93375.1| D-alanine-D-alanine ligase [gamma proteobacterium IMCC1989]
          Length = 307

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 95/296 (32%), Positives = 154/296 (52%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ER+VSL SG A   AL   G     ID+  +V   +     D AF VLHG
Sbjct: 12  VGVLFGGLSAERDVSLESGHAVFEALLTLGVDAVAIDLQDNVVDQITQANIDAAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+L+++ IPYT S   +SAL+M+K+ SKQ+    GV     I+++  T   
Sbjct: 72  GIGEDGRLQALLDIMNIPYTGSDTQSSALAMNKLLSKQLWQGVGVSTSSFIVLDESTDFV 131

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +    ++KP   GSS+G+      + +      + +  +   +L E+ + G E T
Sbjct: 132 EAIAQLGGSAMVKPAHEGSSIGMGFAHSPEELGAAY--AHAKKYDAIVLAEKVLVGDEYT 189

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    L + ++      FY Y+ KY + ++ ++ P  + L+  +EV  LA  A  ++
Sbjct: 190 VAILNGQVLPIIKLET-DRVFYDYDAKYIANDTRYICPCGLSLEEEQEVNALALSAFSSL 248

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            C G  R D + D  +     LE+N  PGMT  S+ P  A  AGYSF  L+  +++
Sbjct: 249 QCEGWGRVDIMRDE-NGGFHVLEVNTVPGMTSHSLVPMAAKAAGYSFERLVGEILK 303


>gi|297250432|ref|ZP_06934039.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
 gi|296838890|gb|EFH22828.1| D-alanine--D-alanine ligase B [Neisseria polysaccharea ATCC 43768]
          Length = 343

 Score =  185 bits (469), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNILHG 105

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHEDSDFD 165

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 166 AVEQQLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 223

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 224 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 283 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340


>gi|293610570|ref|ZP_06692870.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826914|gb|EFF85279.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 308

 Score =  185 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 158/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T  
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 120 SQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DAVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|229542519|ref|ZP_04431579.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
 gi|229326939|gb|EEN92614.1| D-alanine/D-alanine ligase [Bacillus coagulans 36D1]
          Length = 355

 Score =  185 bits (468), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 93/338 (27%), Positives = 142/338 (42%), Gaps = 43/338 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+E EVSL + KA   AL+   + +  I +      +               
Sbjct: 5   ICLLYGGKSAEHEVSLQTAKAVIQALDHEKYDIYPIFITTEGDWIKGPLLTGPVETVKQL 64

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                   D+ F +LHG  GEDG VQ +LELL +PY  +G+LAS
Sbjct: 65  EFRDGKKMAPNALSTTVSGEKGGYDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSS 138
           +  MDK+  K + +  G+     +   R   ++               P  +KP   GSS
Sbjct: 125 SAGMDKVIMKNLFAQAGLDQVKYVSFIRSEWENALETCFQQVEEKTGYPCFVKPANLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI   K    +     ++  ++    +        IEL      D    V    V K D
Sbjct: 185 VGISKCKNRTELEAAFKEAFQYDRKIIVEEGVTAREIELGVIGNDDPQCSVAGEIVAKKD 244

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY    +  ++PA IP  +YK+    A  A +A+ C G+ R+DF       +V 
Sbjct: 245 FYDYKAKYEDGETALIIPADIPEKVYKKCTEAAITAFKALDCSGLVRADFFVTE-DERVI 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG TP S+FP +   AG  + +L+  ++E A
Sbjct: 304 INEINTMPGFTPFSMFPLLWKEAGLDYPQLIEKLIELA 341


>gi|93006854|ref|YP_581291.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
 gi|92394532|gb|ABE75807.1| D-alanine--D-alanine ligase [Psychrobacter cryohalolentis K5]
          Length = 379

 Score =  185 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 153/296 (51%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L     D  FNVLHG
Sbjct: 85  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQ--YDRVFNVLHG 142

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P   +  +    
Sbjct: 143 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSLLTADTDWQ 202

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +++  P +IKP+  GSS+G+  +     +P     +     GD ++ E+++ G E T
Sbjct: 203 QVVNMLGLPLIIKPVHEGSSIGMTKVNNLDELPAAYATAVQC--GDVVMAERWITGREFT 260

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +A
Sbjct: 261 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAADEKHLQDLSLSAFRA 320

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G  F  L   ++
Sbjct: 321 VDAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGMDFESLCWHIL 375


>gi|255320029|ref|ZP_05361225.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
 gi|255302897|gb|EET82118.1| D-alanine--D-alanine ligase B [Acinetobacter radioresistens SK82]
          Length = 311

 Score =  185 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 165/298 (55%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGRAVLEALIRSGVEAEAFDPQERCVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  +V++     
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKIKTKQVWQGSELPTAPHRIVSKDADAD 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P++IKP+  GSS+G+  ++K +     L +++   H   ++ E++++G E T
Sbjct: 128 EVIASLGLPFIIKPVHEGSSIGMSKVEKPEDFAEALAKAT--EHDAVVMAEKWINGREFT 185

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++   +L V  +  PK   FY YE KY+  +  + +P  +     K +Q LA  A QA
Sbjct: 186 IVLLNGQALPVIRLEPPKDVAFYDYEAKYNRNDVQYGIPCGLSEAEEKTLQELALRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +GC+G  R D + D      + LE+N  PGMT  S+ P+ A   GY F +L + ++E 
Sbjct: 246 VGCKGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYDFDQLCVTILEQ 302


>gi|213019645|ref|ZP_03335450.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|212994686|gb|EEB55329.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 315

 Score =  185 bits (468), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 5   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      ++     + 
Sbjct: 65  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 124

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  PYV+KP+  GSS+G+ +I   +        SS+    ++++IE+Y+ GIEL  
Sbjct: 125 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIM--EKMIIEEYIPGIELHT 182

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V        T    PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 183 AV-LLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 241

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+  
Sbjct: 242 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 301

Query: 299 LR 300
            R
Sbjct: 302 HR 303


>gi|296116440|ref|ZP_06835054.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
 gi|295977033|gb|EFG83797.1| D-alanine--D-alanine ligase [Gluconacetobacter hansenii ATCC 23769]
          Length = 314

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 127/310 (40%), Positives = 188/310 (60%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNV 57
           ++VLMGG+S+EREVSL SG     AL   G+ V Q+     +G +++ L   +PD+ FN 
Sbjct: 6   ISVLMGGMSAEREVSLKSGAGVTDALRSLGYPVRQVIAGEDLGALVSELTTHRPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG +Q +L+ + I YTHSG+  SA++MDK  ++ V ++ G+PV    +V    
Sbjct: 66  LHGRFGEDGSIQGVLDWMGIAYTHSGVRTSAVAMDKAAARAVFTAAGLPVARGTVVAMSE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +++   +  PYVIKPL  GSS+G+ +I+   +    + +S     G   L+E+++ G EL
Sbjct: 126 LEAADPLPVPYVIKPLNEGSSVGVHIIRAGANTRASIARSW--RFGTSALVEEFIPGREL 183

Query: 178 TCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GVMGD +L VT+I       + FY Y+ KY    S+HVLPA+I  D ++  + LA  A
Sbjct: 184 TVGVMGDRALTVTDITPRDDGGNGFYDYDAKYQQGGSSHVLPARIHPDAFEHARALALAA 243

Query: 235 HQAIGCRGISRSDFLFDPLS-----RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           H+A+GCRG SR+DF +D         ++  LE N QPGMT  S+ PE AA  G ++ +L 
Sbjct: 244 HRALGCRGASRTDFRYDDTRDPDGAGRLVILETNTQPGMTETSLLPEQAAACGVAYPQLC 303

Query: 290 LWMVEDASCL 299
            W+VE A+C 
Sbjct: 304 QWLVEQATCR 313


>gi|145641272|ref|ZP_01796852.1| D-alanylalanine synthetase [Haemophilus influenzae R3021]
 gi|145274109|gb|EDK13975.1| D-alanylalanine synthetase [Haemophilus influenzae 22.4-21]
          Length = 297

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 166/299 (55%), Gaps = 10/299 (3%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVSL+SGKA   AL   G+    ID        L     + AFN+LHG  G
Sbjct: 2   LLGGTSAEREVSLNSGKAVLEALLKQGYNAYPIDPKEYNVANLKKDGFNRAFNILHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122
           EDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T      
Sbjct: 62  EDGTIQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFSELDP 121

Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G EL
Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAGDEL 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A+ A
Sbjct: 180 TVPVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E +
Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELS 296


>gi|148244843|ref|YP_001219537.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
 gi|190359219|sp|A5CW55|DDL_VESOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146326670|dbj|BAF61813.1| D-alanine-D-alanine ligase B [Candidatus Vesicomyosocius okutanii
           HA]
          Length = 293

 Score =  185 bits (468), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 97/295 (32%), Positives = 142/295 (48%), Gaps = 4/295 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+LMGG S+ER +SL SG+A    L +        D            + D  F +LHG
Sbjct: 2   IAILMGGNSAERAISLKSGEAIYQTLNNQNIDCFTFDWYGDNLSEFWQQEFDQVFIILHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE   I YT S   AS  SMDK R+K +     + + PSI+ N     +
Sbjct: 62  RGGEDGYIQKQLENRGICYTGSDSNASHNSMDKARTKIIWEQHSLTLAPSIIANIDQPIN 121

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP   GSS+GI  +     +   L    +W +    LIEQ++ G E T  
Sbjct: 122 PINFPLPWAVKPTLEGSSIGISKVDNQMQLNDAL--MLAWQYAPYALIEQWIKGDEYTVA 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +       +   +FY YE KY S  + ++ P  + L   K +Q +A  A  AI  
Sbjct: 180 ILGDKA-LPVVRIITDQNFYDYESKYHSNKTQYLCPCNLSLTQEKALQAIALKAFFAINA 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  R DF+ +    K + LEIN  PGMT  S+ P  A   G SF +L+  ++ +
Sbjct: 239 KGWGRVDFIINQH-NKPYLLEINTVPGMTSHSLVPMAAKAIGISFNKLVTSIINE 292


>gi|193214070|ref|YP_001995269.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
 gi|229463741|sp|B3QU24|DDL_CHLT3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193087547|gb|ACF12822.1| D-alanine/D-alanine ligase [Chloroherpeton thalassium ATCC 35110]
          Length = 366

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 157/349 (44%), Gaps = 53/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG SSE E+S+ S ++ A+AL+   +K+  I + ++   + A             
Sbjct: 6   VALLFGGRSSEHEISVISARSIANALDKTKYKIQPIYITKAGKWLGAEASRKILAMDFES 65

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                            K D+AF VLHG +GEDG VQ +LE+ +
Sbjct: 66  AIKSPTKKEIHLIEKEIVLLCQNSQFRFDFRTAKIDVAFPVLHGPYGEDGTVQGLLEMFD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPP 127
           + Y  SG+LASA++MDK  +K      G+ V   +   R   +          +  +  P
Sbjct: 126 VAYVGSGVLASAITMDKAVAKICFEHAGLQVGEYLAFLRREFEENRGSVVARAEKKLRYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI        +   +  + +++    +        +E+      +   
Sbjct: 186 MFVKPANMGSSVGISKAHNRNELIEAIELALAYDRKFLIEKAINAREMEVAVLGNDEPIA 245

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 VP ++FY Y+ KY   +S  ++PA+I      +++  A  A  A  C G++R D
Sbjct: 246 SAVGEVVPCNEFYDYDAKYVKGSSEVIIPAQISEAFAGKLKAAALNAFVAADCEGMARVD 305

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           FL +  + +++  EIN  PG T +S++P++ A  G S+ EL+  ++E A
Sbjct: 306 FLVEKETNEIYINEINSIPGFTSISMYPKLFAQVGISYTELINRLIELA 354


>gi|308388626|gb|ADO30946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha710]
 gi|325130850|gb|EGC53583.1| D-alanine--D-alanine ligase B [Neisseria meningitidis OX99.30304]
          Length = 304

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|54309150|ref|YP_130170.1| D-alanine-D-alanine ligase B [Photobacterium profundum SS9]
 gi|46913582|emb|CAG20368.1| hypothetical D-alanine-D-alanine ligase B [Photobacterium profundum
           SS9]
          Length = 308

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 102/301 (33%), Positives = 165/301 (54%), Gaps = 10/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG SSER VSL SG+    A+E  G +   ID       ++   K D  F  LHG
Sbjct: 7   IGVLLGGESSERSVSLKSGECVVKAIESLGHEAISIDPKHIDVTLMGFFKLDKVFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE G VQA+L+LL+IPYT SG LASA+S++K+ SK++  S  +     + +++     
Sbjct: 67  GIGESGHVQALLDLLKIPYTGSGTLASAMSLNKLNSKEIWQSNSLKSADWVTLHKHAPIE 126

Query: 121 QHLISP-----PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                      P V+KP+  G S+G+  +  +  +   +   +++ + D +LIE ++ G 
Sbjct: 127 DIKAQLSSVVCPVVVKPISQGCSIGVSKVDNNADLLEAV--ITAFEYDDDILIESFIAGR 184

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E TC V+    L + +I      F+ Y+ K+ S ++T+  P+ +  +  +++Q LA  A+
Sbjct: 185 EYTCAVLNGKPLPIVQIR--SEQFFDYDAKFGSQSATYHCPSDLTSEQERDMQALALNAY 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG  R D + D  S  VF +E+N  PGMT  S+FP  A  AG SF +++  +++ 
Sbjct: 243 NALGCRGWGRVDTILDE-SGDVFLIEMNTIPGMTTRSVFPMAAKEAGLSFGQVISSLLDS 301

Query: 296 A 296
           A
Sbjct: 302 A 302


>gi|229918692|ref|YP_002887338.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
 gi|229470121|gb|ACQ71893.1| D-alanine/D-alanine ligase [Exiguobacterium sp. AT1b]
          Length = 308

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 122/303 (40%), Positives = 178/303 (58%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG+    AL + G +V+ ID        L  L  D+  + LHG
Sbjct: 3   VAVLYGGVSGEREVSLTSGQGMIEALTERGHEVTAIDFHPERANELLTLDVDVVVSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116
            +GEDG VQ++LE+  IPYT SG+LASAL+MDK R+K + ++ G+ V   +      +  
Sbjct: 63  KYGEDGRVQSLLEMAGIPYTGSGVLASALAMDKARAKIIFAASGIRVARDVLIESRESID 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              ++  +  P V+KP + GSS G+ +   +  +   + ++ +      +L+EQY+ G E
Sbjct: 123 AKVAEWGMEFPCVVKPAQEGSSNGLTIAMDEAMLREGIEKAFAC--DSAVLVEQYIKGKE 180

Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           LT  V+G+   +        +PK++FY YE KY+   S HV PA+I  D+  EVQ+ A L
Sbjct: 181 LTVPVIGNFGKEEALPVIEIIPKNEFYDYESKYTEGGSIHVCPAEISDDLTSEVQQAAVL 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+GC G SRSDFL      K + LE N  PGMTP+S+FP+ A   G S+ ELL   +
Sbjct: 241 AHRALGCSGYSRSDFLVSEE-GKAYILETNTLPGMTPLSLFPDSAKTVGISYGELLERFI 299

Query: 294 EDA 296
           E A
Sbjct: 300 ELA 302


>gi|325203531|gb|ADY98984.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240355]
          Length = 304

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL I YT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGISYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|190570829|ref|YP_001975187.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|229486023|sp|B3CPK8|DDL_WOLPP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190357101|emb|CAQ54511.1| D-alanine--D-alanine ligase [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
          Length = 317

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 114/302 (37%), Positives = 173/302 (57%), Gaps = 5/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L    P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAQKLKKTNPALAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHS ++ASA++M+K+ SK +  S  +      ++     + 
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSEVMASAVAMNKVMSKHIFHSLNIDTPRGYVISREDVLK 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  PYV+KP+  GSS+G+ +I   +        SS+    ++++IE+Y+ GIEL  
Sbjct: 127 NNIKVDYPYVLKPINEGSSIGVHMIFSHEDYLELKNNSSTIM--EKMIIEEYIPGIELHT 184

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V        T    PK+ FY YE KY+   + H+ PA+IP +IY+     A   HQ +G
Sbjct: 185 AV-LLNEAIGTMEIRPKNKFYDYEAKYTDGFAEHIFPAEIPNNIYRITLEHALKVHQFLG 243

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASC 298
           C+ +SRSDF ++P +  +  LE+N  PG T +S+ PE+A    G  F EL+  +VED+  
Sbjct: 244 CKTVSRSDFRYNPQNNTLKMLEVNTHPGFTELSLVPEIAKLTRGIDFNELVKIIVEDSLH 303

Query: 299 LR 300
            R
Sbjct: 304 HR 305


>gi|332528461|ref|ZP_08404453.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
 gi|332042140|gb|EGI78474.1| d-alanine--d-alanine ligase [Hylemonella gracilis ATCC 19624]
          Length = 333

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 153/304 (50%), Gaps = 7/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG     AL+  G      D  +     L        F  LHG
Sbjct: 11  VAVLMGGASAEREVSLMSGTGVLKALQSRGVDAHAFDPAQRELGELKRDGYARCFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG+LAS+++MDK+ +K++  + G+P      V       
Sbjct: 71  RFGEDGTVQGALELLGIPYTGSGVLASSVAMDKVMTKRIWLAEGLPTPRWKNVTSVDETR 130

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             L     P ++KP + GS++G+  +            ++   H   +L EQ++ G E+T
Sbjct: 131 AALAELGAPMIVKPAREGSTIGLTKVNDATQCAQAYQLAA--QHDPLVLCEQFIAGDEVT 188

Query: 179 CGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             V+G  +          V     Y YE KY S  + +++P+ +P      +Q L   + 
Sbjct: 189 VPVIGSGADARALPAIRIVAPGGNYDYEHKYFSDGTQYIIPSGLPEGEEARIQDLVLRSF 248

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+GCRG +R+D + D  +R  + LEIN  PGMT  S+ P  A  AG S+ +L L ++  
Sbjct: 249 HALGCRGWARADVMIDAKTRTPYLLEINTSPGMTGHSLVPMSAKAAGISYEDLCLRLLAT 308

Query: 296 ASCL 299
           A+  
Sbjct: 309 ATLD 312


>gi|145219530|ref|YP_001130239.1| D-alanine--D-alanine ligase [Prosthecochloris vibrioformis DSM 265]
 gi|229485976|sp|A4SE28|DDL_PROVI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145205694|gb|ABP36737.1| D-alanine--D-alanine ligase [Chlorobium phaeovibrioides DSM 265]
          Length = 361

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 98/347 (28%), Positives = 158/347 (45%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG S+E E+S+ S ++ A  +    ++V  I + R+       +           
Sbjct: 6   VALLFGGRSAEHEISIISAQSVARHINPDHYRVVPIYITRNGRWYSEGIASSILELDIAA 65

Query: 50  -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+AF +LHG++GEDG +Q  L+ + IP
Sbjct: 66  LIRKSGTAAASLKLQEMVLASGQQPFSFTFAGIDIAFPILHGSYGEDGRIQGFLDTVAIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129
           YT  G+ ASAL+MDK  SK  VS  G+ V P + V     +             +  P  
Sbjct: 126 YTGCGVTASALTMDKALSKLCVSEAGIAVAPGVTVLAGDWEKSPEQILSSIPETLIYPVF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +     +P  L  + + +    +    +   IE+      D     
Sbjct: 186 VKPAHLGSSVGISKVSVQGELPEALAHACNLDTKVLIEQAMHGKEIEVAVLGNNDPIASA 245

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P SDFY Y+ KY    +   +PA++P ++ + VQ  A  A++A+GCRG++R DF 
Sbjct: 246 CGEIEPGSDFYDYDDKYIHNTAKLFIPARLPEELSRRVQADALTAYRALGCRGMARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D  S +V + EIN  PG T +S++P++   AG +F EL   +++ A
Sbjct: 306 VDEKSGQVVFNEINTIPGFTDISMYPQLMEAAGIAFPELCDRLLQLA 352


>gi|284008382|emb|CBA74791.1| D-alanine--D-alanine ligase [Arsenophonus nasoniae]
          Length = 300

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 164/302 (54%), Gaps = 13/302 (4%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVSL SG A  + L DAG     +D+     + L     +  F  LHG  G
Sbjct: 2   LLGGNSAEREVSLQSGDAVVNGLRDAGIAAYPVDIKDFAVIKLKEAGYNKVFIALHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-- 121
           EDG VQ +LE L +PYT SG+LAS+LSMDK+R+KQ+ +  G+P+ P I +++  +     
Sbjct: 62  EDGTVQGVLEFLGLPYTGSGVLASSLSMDKLRTKQLWAGIGLPIAPYIALDKQQLAMMSD 121

Query: 122 -------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP   GSS+G+  +     + + L    ++ +   +LIE++++G
Sbjct: 122 EMLFESVCHLGLPLIVKPSLEGSSVGMSKVTTLSELRIAL--EFAFRYDKDVLIEKWLNG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++G+  L       P   FY Y+ KY S  + +  P+ +  +  +++ +LA  A
Sbjct: 180 PEYTVAIVGEQVLPSI-RIQPVGVFYDYDAKYLSNETQYFCPSGLKAEEEEQLNKLALAA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+GC G  R D + D      + LEIN  PGMT  S+ P  A  AG +F +L+  ++E
Sbjct: 239 YKAVGCAGWGRVDVMRD-NDGVFYLLEINTSPGMTGHSLVPMAAKQAGMTFSQLVKKILE 297

Query: 295 DA 296
            A
Sbjct: 298 LA 299


>gi|319408821|emb|CBI82478.1| D-alanine--D-alanine ligase [Bartonella schoenbuchensis R1]
          Length = 306

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 143/311 (45%), Positives = 209/311 (67%), Gaps = 21/311 (6%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA ALE  G+ V ++DVD+ +  VL  L+
Sbjct: 6   IAVLMGGFSSERSVSLSS----------GTACADALEKQGYHVIRVDVDQQIATVLKQLQ 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+ FN LHG FGEDG +Q ILE  +IPYTHSG++ASAL+MDK R+K +V++ GV V PS
Sbjct: 56  PDIVFNALHGPFGEDGCIQGILEYFKIPYTHSGVMASALAMDKGRAKVIVANAGVHVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++NRF +  +H + PPYVIKP++ GSS G++++  D+++PL  + SS W +GD++++E+
Sbjct: 116 CVMNRFAIGREHPMEPPYVIKPVREGSSFGVVIVSGDEALPLCNVMSSEWVYGDEVIVEK 175

Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G ELTC V   +A      +      FY Y+ KY    S H+ PA++ L+IY++VQR
Sbjct: 176 YIPGRELTCAVLGDEALDVCEIVPDKHFQFYDYDSKYKLGGSLHICPAQLSLNIYQKVQR 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++  AH+AIGCRG+SRSDF F   + ++ WLEIN QPGMTPVS+ P++A  +G ++ +++
Sbjct: 236 MSLAAHRAIGCRGVSRSDFRFVEETEELVWLEINTQPGMTPVSLVPDIAKASGRTYGDIV 295

Query: 290 LWMVEDASCLR 300
            W+ EDASC+R
Sbjct: 296 KWIAEDASCMR 306


>gi|188590367|ref|YP_001922200.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
 gi|229463742|sp|B2UY33|DDL_CLOBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188500648|gb|ACD53784.1| D-alanine--D-alanine ligase [Clostridium botulinum E3 str. Alaska
           E43]
          Length = 301

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 167/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L IPY+  G L+S++ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSSMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   +++   W    +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVIEGFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V     +       PK++F+ +  KY+   S   +  ++P  +++EV+++A   ++A
Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFPELIDMIIDES 296


>gi|262373759|ref|ZP_06067037.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
 gi|262311512|gb|EEY92598.1| D-alanine-D-alanine ligase B [Acinetobacter junii SH205]
          Length = 308

 Score =  184 bits (467), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 154/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG+A   AL  +G +    D        L     D AF VLHG
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQEKSVTELVA--YDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + +  +
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDSDLN 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIADLGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVQYGIPCGLSETEEKSLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL L ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCLAILEQ 302


>gi|257060565|ref|YP_003138453.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 8802]
 gi|256590731|gb|ACV01618.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 8802]
          Length = 351

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 95/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVSL+S +A A+AL+       + +  I + ++           VL  
Sbjct: 6   VGLLFGGRSGEHEVSLNSARAIATALQSGENPQKYDIIPIYIQKNGVWQAGETAQQVLND 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L++ P+  SG+L S
Sbjct: 66  AKPLPCEDATSQQLWTFPPQVSEVDVWFPILHGPNGEDGTLQGLLTLMQTPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135
           A+ MDK+  K   +  G+P    I V+R  + S   +              P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYIAVDRAQIWSNPCVFPKLCDEIEQGLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++    +        +E       +    V      
Sbjct: 186 GSSVGIAKVRSRSELEKALDSAASYDRRIVIETGVKAREVECAVLGNENPKASVIGEITY 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +   +PA++P  I  ++Q +A  A +A+   G++R DF +   S+
Sbjct: 246 NSDFYDYEAKYTDGMAQMQIPAQLPDAIVTQIQDMAIQAFKAVDGAGLARVDFFYVEDSQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +VF  EIN  PG T  S++P++    G  F EL+  +++ A
Sbjct: 306 EVFINEINTLPGFTAFSMYPQLWKETGVPFAELVDQLIQLA 346


>gi|262280494|ref|ZP_06058278.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
 gi|262258272|gb|EEY77006.1| D-alanine-D-alanine ligase B [Acinetobacter calcoaceticus RUH2202]
          Length = 308

 Score =  184 bits (466), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 157/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T  
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 120 SQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYERNDVEYGIPCGLSETEEKNLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDELCVAILEQ 302


>gi|114321339|ref|YP_743022.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
 gi|123026549|sp|Q0A6K5|DDL_ALHEH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114227733|gb|ABI57532.1| D-alanine--D-alanine ligase [Alkalilimnicola ehrlichii MLHE-1]
          Length = 311

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG+A   AL   G     +D  +     L     D AF  LHG
Sbjct: 12  VAVLMGGDSAEREISLISGRAVFEALRRRGVDAEAVDTAQVALAELT--GFDRAFIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q  LE L +PYT SG+L  A+ MDK R+K +     +PV P  L+   T   
Sbjct: 70  RGGEDGVIQGALEALGVPYTGSGVLGCAIGMDKWRTKLLWRGAELPVPPGALLRPETNRQ 129

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P +IKP   GSS+G+   K ++   L+  ++ +  + D +L E++++G E T
Sbjct: 130 ALIGSVGLPLMIKPAHEGSSIGMA--KVERPEELEAARAEAARYDDLVLAERWIEGGEYT 187

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+ +L    +  P+   Y +E KY S ++ +  PA +     +++++LA  A +  
Sbjct: 188 VAILGEEALPAIRLETPRGF-YDFEAKYRSGDTRYHCPAGLTEAEEQQIRQLALDAFRVA 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DF+ D    + + LEIN  PGMT  S+ P  A   G  F EL   ++ D+
Sbjct: 247 GASGWGRVDFMRDRQ-GRFWLLEINTIPGMTDHSLVPMAARAVGIDFDELCWRILLDS 303


>gi|303228450|ref|ZP_07315283.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
 gi|303230853|ref|ZP_07317600.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514613|gb|EFL56608.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302516952|gb|EFL58861.1| D-ala D-ala ligase N-terminal domain protein [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 310

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 164/304 (53%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S+E EVS  +G A A AL   G+ VS ++++ R+V   + +LK D+ FN +H
Sbjct: 6   IIVLMGGPSAEAEVSRRTGAAIAEALISKGYHVSTLELNPRTVLQDIENLKGDVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q  LE+ EIPYT SGI+A ++ M+K  SK V     +P   SI  N     
Sbjct: 66  GRYGEDGALQGALEMAEIPYTGSGIMAHSVGMNKKVSKDVFKGAHIPTAESISYNGNLQS 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 D +   S P V+KP   GSS+G+ ++K++  +   + ++    +   L++EQY+
Sbjct: 126 KEDIIKDIESKFSLPVVLKPATQGSSIGVTIVKEENQLAKAVTEAL--TYDPILVVEQYL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +G E T  V+   +L       P S  Y Y  KY++  + +++PA I  D+ KE+Q +  
Sbjct: 184 NGREFTVSVLDGKAL-AIIEIRPHSGEYDYASKYTAGATDYLVPAPISADMTKEMQAIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G  R D + D     ++ LE N  PGMT  S+ P+ A   G  F EL   +
Sbjct: 243 LVYREVQASGAIRVDVMTDDKDN-MYVLEYNTIPGMTATSLVPKAAKEVGIDFPELCEKI 301

Query: 293 VEDA 296
           +  A
Sbjct: 302 LLTA 305


>gi|186477419|ref|YP_001858889.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|229463737|sp|B2JHF8|DDL_BURP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|184193878|gb|ACC71843.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 313

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGASAEREVSLNSGRLVLQGLRDAGVDAYAFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQLGIPTPPFEAVLRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K   ++   L    +      +++E+ ++G
Sbjct: 132 ARAQGIVAKLGLPLFVKPASEGSSVAVIKVKTADALVPAL--EEAVKFDKIVVVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  I  +    +++LA  A
Sbjct: 190 GGEYTACIAGDLDLPIIRIVPAGEFYDYHAKYIANDTQYMIPCGIAAEEEARLKKLARQA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S++EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDGEGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYQELVVKVL 307


>gi|251777600|ref|ZP_04820520.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243081915|gb|EES47805.1| D-alanine--D-alanine ligase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 301

 Score =  184 bits (466), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 165/299 (55%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL SGK+   ++    ++V  I +D    ++      D A   LHG
Sbjct: 3   VGVIMGGISSEREISLKSGKSIVDSINKNKYEVVSIVIDEKEDIINKIKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L IPY+  G L+SA+ MDK  SK ++ +  +   P I + +     
Sbjct: 63  QFGEDGTVQSVLQTLGIPYSGCGPLSSAMCMDKDISKCILKAANIRTAPWINLRKNDAIN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P V+KP  GGSS+   +IK+++ I   + +   W    +++IE+++ G E+
Sbjct: 123 YEEIEKMGYPVVVKPTHGGSSVATFIIKEEKDIKDAVREGFKW--DSEVIIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V     +       PK++F+ +  KY+   S   +  ++P  +++EV+ +A   ++A
Sbjct: 181 TCPV-FGDKMLPVVAIKPKAEFFDFTAKYADGGSDEFV-TELPKKLHEEVEEMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +     +  + LE+N  PGMTP S+ P+ AA    SF EL+  +++++
Sbjct: 239 LKCEVYSRVDMIVTE-DKVPYILEVNTLPGMTPNSLIPKSAAGVNISFTELIDMIIDES 296


>gi|309379070|emb|CBX22372.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 304

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  PA+   +     ++ LA    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETMMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAAGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301


>gi|149927134|ref|ZP_01915391.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
 gi|149824073|gb|EDM83294.1| D-alanine--D-alanine ligase [Limnobacter sp. MED105]
          Length = 323

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/301 (34%), Positives = 150/301 (49%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+EREVSL SG    +AL+  G      D      + LA  + D A   LHG
Sbjct: 13  VVVLFGGRSAEREVSLKSGSMVLAALKRNGVDAHGFDPAERSMVELAQGEFDRAVISLHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q +LE L IPYT SG+ ASAL+MDK+ +K    S G+     + +      S
Sbjct: 73  RFGEDGTIQGVLEWLNIPYTGSGVTASALAMDKILTKAAWISQGLATPDYVRLEPGFNVS 132

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP + GS+LG+  +K    +        ++ +   +L E++V G ELT
Sbjct: 133 EVVQRLGLPLIVKPAQEGSTLGLTKVKTVDQLQAAF--DLAYKYDPNVLAEKFVSGQELT 190

Query: 179 CGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             VMG+   A              Y Y  KY    + +  P+ +  D   EVQ L   A+
Sbjct: 191 VPVMGEGAGAHALPVIRIQAPDGNYDYHNKYIGNETKYFCPSGLNSDFEAEVQALCVKAY 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +GC G  R+D L D  S K + LE+N  PGMT  S+ P  A  +G  + +L+L +   
Sbjct: 251 QVLGCAGWGRADVLVDE-SGKPWLLEMNTSPGMTDHSLVPMSARASGVEYDDLVLQIAAS 309

Query: 296 A 296
           A
Sbjct: 310 A 310


>gi|67922156|ref|ZP_00515671.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67856056|gb|EAM51300.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 349

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS++S +A A AL     D  + V  + + ++   +           
Sbjct: 6   IGLLFGGRSGEHEVSINSAQAIAQALQTGENDHKYDVIPVYIQKNGVWIAGETADEVLES 65

Query: 46  -------------LAHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                        L    P+     + F VLHG  GEDG +Q +L L+++P+  SG+L S
Sbjct: 66  KTPLSPEDTNPYQLWQFPPELQEVEVWFPVLHGPNGEDGTIQGLLTLMQVPFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135
           A+ MDK+  K   +  G+P      V R  + S   I              P  +KP   
Sbjct: 126 AVGMDKIAMKMAFAQAGLPQVKYKAVERSQIWSNPCIFPKLCDDIEAGLGYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +    +   L  ++S++    +        +E       +    V      
Sbjct: 186 GSSVGIAKARSHSELEAALDSAASYDRRIVIEAGVTARELECAVLGNDNPKASVVGEITF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   S   +PA +P  + K++Q +A  A + +   G++R DF +   ++
Sbjct: 246 DSDFYDYETKYTEGRSQIHIPASLPEKVIKQIQEMAIQAFKTVDASGLARVDFFYVEETQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++  EIN  PG T  S++P++    G SF +L+  +++ A
Sbjct: 306 AIYLNEINTLPGFTKFSMYPQLWQATGISFEQLVDKLIQLA 346


>gi|149377260|ref|ZP_01895007.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
 gi|149358448|gb|EDM46923.1| D-alanine-D-alanine ligase B [Marinobacter algicola DG893]
          Length = 325

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 104/297 (35%), Positives = 158/297 (53%), Gaps = 6/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV +GG S+EREVSL SG+A  SAL  AG     +DV   +   +   + D  F  LHG
Sbjct: 26  VAVFLGGDSAEREVSLKSGQAVLSALVSAGVDAYAVDVRGCLLKTVEEPEFDRVFIALHG 85

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +QAIL    IP+T S +LASAL+MDK+RSK V   CG+P      +       
Sbjct: 86  RGGEDGTIQAILSQAGIPFTGSDVLASALAMDKLRSKYVFEGCGLPTPKFRAMASAEEAG 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +S P  +KP + GSS+GI  +  +Q +      + +      +L+E++++G E T
Sbjct: 146 SLLQSLSLPLSVKPSREGSSIGIRKVNSEQELVEAY--TQAAALDPLVLVEEWIEGPEFT 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D +L    +      FY Y+ KY + ++ + +P  +  D   ++Q LA  A + +
Sbjct: 204 VSLLQDQALPAIGL-CTDHVFYDYDAKYLADDTRYQIPCGLDPDSELKLQHLALDAFRVL 262

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GCR   R D + D    + + LE+N  PGMT  S+ P  A  AG SF EL++ ++ D
Sbjct: 263 GCRTWGRVDIMQDRQ-GEFWILEVNTVPGMTDHSLVPMSARAAGISFEELVVRILMD 318


>gi|262377184|ref|ZP_06070409.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
 gi|262307922|gb|EEY89060.1| D-alanine-D-alanine ligase B [Acinetobacter lwoffii SH145]
          Length = 309

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 161/298 (54%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A   AL  +G      D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGTAVLEALVRSGVNAEAFDPQERSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L +PYT +G+  SA+ MDK+++KQV     +P  P  +V + +  +
Sbjct: 68  RGGEDGQIQGALEWLNVPYTGTGVQGSAIGMDKVKTKQVWQGSELPTAPYRIVTKDSDAT 127

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 EIVNALGLPLIIKPVHEGSSIGMSKVEKIEDFAEAIAKAT--EHDAVVMAEKWITGREYT 185

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V+   +L V  +  P+   FY YE KY   +  + +P  +     ++++ L+  A QA
Sbjct: 186 IVVLNGQALPVIRLEPPQDVAFYDYEAKYQRNDVQYGIPCGLSEAEEQQLKALSLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ AA  GYSF EL + ++E 
Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAAAVGYSFDELCVAILEQ 302


>gi|326203283|ref|ZP_08193148.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325986541|gb|EGD47372.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 376

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 157/357 (43%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVS  S ++    ++   ++V  I + +    +               
Sbjct: 6   VAIIFGGQSSEHEVSRVSAQSVIENIDKEKYEVEIIGITKKGQWLKYNGPVEKIGSGEWE 65

Query: 46  ---------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG  GEDG +Q + 
Sbjct: 66  AVAHNKLLEGKSSENETASEITNVNSARQVIAGNTKKPIDVVFPVLHGCNGEDGTIQGLF 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHL 123
           EL  IPY   G+L +A+ MDK  SK +    G+P    ++ NR  +++         +  
Sbjct: 126 ELAGIPYVGCGVLGAAVGMDKAYSKIIFEKEGLPQGDYLVFNRKQVNNRLEEAVAQVEST 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           ++ P  +KP   GSS+G+      +S+   L+ ++   +  ++L+E+++DG E+ C V  
Sbjct: 186 LTYPCFVKPANAGSSVGVNKASDRESLEKALIIAA--KNDRRILVEEFIDGREIECAVLG 243

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYS--SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +         VP ++FY YE KY     +   +    +  +  ++++  A  A + + 
Sbjct: 244 NDEPVASTVGEVVPCNEFYDYEAKYQVGDSSKVVIPAENLSTETVEKIREYAVRAFKCLD 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR DF     +  ++  EIN  PG T +S++P++ A +G  + +L+  ++E A
Sbjct: 304 CAGLSRVDFFVHKDTGAIYINEINTLPGFTSISMYPKLWAASGIPYSQLIDKLIELA 360


>gi|228952937|ref|ZP_04115001.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806742|gb|EEM53297.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 304

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 158/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P++I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPVEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|229073690|ref|ZP_04206803.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229079781|ref|ZP_04212314.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228703621|gb|EEL56074.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228709399|gb|EEL61460.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
          Length = 304

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ ELL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSELLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|325923954|ref|ZP_08185544.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325545580|gb|EGD16844.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 318

 Score =  183 bits (465), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDARPVDGIPAMAQALVEKRFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           + G  EDG+VQ ++E  ++PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFKVPYTGSNVLGSALSMDKIRTKQVWLSLGLCTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+GI  +     +   ++ ++   +   LL+EQ ++
Sbjct: 139 ADQIHAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+G+ +L      VPK  +Y Y  KY + ++ ++ P        + +++LA  
Sbjct: 197 GDELTVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A G RG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|307243887|ref|ZP_07526012.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
 gi|306492709|gb|EFM64737.1| D-ala D-ala ligase N-terminal domain protein [Peptostreptococcus
           stomatis DSM 17678]
          Length = 298

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 142/299 (47%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GGISSERE+SL SGKA    L+   ++V    +D    +       D+A   LHG
Sbjct: 3   VAVIYGGISSEREISLRSGKAIIDNLDRNKYEVIGCQIDEMTDVFKIDNDIDIALIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFT 117
            FGEDG+VQ+ILE   I Y     L S + MDK  +K +     +          V    
Sbjct: 63  KFGEDGVVQSILEAKGIKYCGCNPLTSGILMDKNYTKTIARQNNLLTADWTSVKSVEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P  IKP  GGSS+    IK  + +   +       + + +LIE+YV G+E 
Sbjct: 123 YGLIDRMGYPVFIKPNSGGSSVATFFIKDKKDVENAV--REGLKYDEIVLIEKYVKGVEY 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++              ++F+ +E KYS+ N       ++  ++ K+++  +    + 
Sbjct: 181 TSFILNGQVFPTI-RITSDNEFFDFEAKYSTTNGAREEVVELSPELDKKLKEASNTCWKV 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             C+G  R D++     + V+ LE+N  PGMT  S+ P+ A   G S++ LL  ++E +
Sbjct: 240 FNCKGYVRVDYIITE-DQDVYLLELNTLPGMTETSLIPKSAKAMGISYKGLLDKLIESS 297


>gi|223937418|ref|ZP_03629323.1| D-alanine/D-alanine ligase [bacterium Ellin514]
 gi|223893969|gb|EEF60425.1| D-alanine/D-alanine ligase [bacterium Ellin514]
          Length = 304

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 150/296 (50%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+EREVSL +G A A AL   G +V ++D       + A    ++ F  LHG
Sbjct: 12  ITVMLGGPSAEREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP V+KP++ GSS+G+  + +       L ++    +  Q+L+E+ + G E T G
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++            PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AIG 
Sbjct: 188 IL-GNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R  SR D +  P + +   LE+N  PGMT  S+ P+ A  AG  + EL   MV+ A
Sbjct: 247 RDYSRVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301


>gi|84625259|ref|YP_452631.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|84369199|dbj|BAE70357.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 318

 Score =  183 bits (464), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|332991942|gb|AEF01997.1| D-alanine--D-alanine ligase [Alteromonas sp. SN2]
          Length = 322

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER+VSL+SG A  +AL          D        L   K D    +LHG
Sbjct: 18  VAVMFGGDSAERDVSLNSGNAVLAALLRENVNAIAFDPAERPLTDLISEKVDRVLIMLHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114
             GEDG +Q  L+LL+IPYT + +L SAL+MDK+ +KQV  S G+P              
Sbjct: 78  RGGEDGSMQGALQLLKIPYTGTPVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRRFEA 137

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++N+ +Q+L+EQY+ G
Sbjct: 138 GKCSAIMEKLGNEVMVKPAREGSSIGMARVTSAEQLENAI--QDAFNYDNQVLLEQYIKG 195

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P +  Y Y  KY    + +  P+ +  +    + +L+  A
Sbjct: 196 PEFTVSVIQGQALPSIRMSTPHTF-YDYAAKYQDDTTEYFCPSGLSDEQEAHLAQLSTQA 254

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +I   G  R D + D      + LE N  PGMT  S+ P+ A  AG SF EL+L ++ 
Sbjct: 255 FDSISGSGWGRIDVMQDG-DGHFYLLEANTVPGMTEKSLVPKAAKVAGLSFDELVLAILA 313

Query: 295 DA 296
            +
Sbjct: 314 TS 315


>gi|317486231|ref|ZP_07945065.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
 gi|316922530|gb|EFV43782.1| D-alanine-D-alanine ligase [Bilophila wadsworthia 3_1_6]
          Length = 299

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 157/296 (53%), Gaps = 6/296 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           +L GG S EREVSL  G+  A+AL++ G  V+  D  +    ++    + D AF  LHG 
Sbjct: 5   LLAGGWSPEREVSLKGGEQIAAALKERGHSVTLCDPAKDFERLMDMAREHDAAFINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQAIL+ +  PY  +G   S L++ K  ++Q+    G+ +   +        + 
Sbjct: 65  PGEDGLVQAILDRVNCPYQGAGPAGSFLALHKAAARQIFRDAGLNIPDGVFLPRHPGPNW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +K   GGSSL +  +  ++ +   L    S   G++ ++E  V G E+TCG
Sbjct: 125 KPDLQYPMFVKSNTGGSSLHLSRVTNEEELYTALNSLFSM--GEEAIVETAVVGREVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+G+ +L    + V K +++ Y  KY+   +  + PA I  +   +VQ  A  AH A+G 
Sbjct: 183 VLGEEALAPI-LVVSKGNYFDYHNKYAPDGAQEICPAPIAPEETAKVQDAALRAHHALGL 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G SR+DF+       ++ LE+N  PGMT  S+ P  AA  G SF +L+  ++E A
Sbjct: 242 KGYSRADFIL-QDDGTLYILEVNTTPGMTSTSLVPREAAVKGMSFADLVERLLELA 296


>gi|330813738|ref|YP_004357977.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327486833|gb|AEA81238.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 302

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 179/298 (60%), Gaps = 3/298 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L+GG S ER+VSLS+G+A   AL   G++V ++D  +      +    DLAFN LHG F
Sbjct: 8   LLVGGPSKERKVSLSTGRAVYLALRKLGYEVVKVDP-KIGSKNFSQHNCDLAFNALHGQF 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q++LE  +IPYTHSG+ +SA++MDK++SK+      +      ++ + +  +  
Sbjct: 67  GEDGTIQSLLERQKIPYTHSGVKSSAIAMDKLKSKKKFIKAKIKTPKFKVIKKLSDLNNI 126

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +    +V+KP+  GSS+G+++ K   S+    ++     +G +LL E++++G E+   +M
Sbjct: 127 ISKKKFVLKPINEGSSVGVVICKNLSSLNKVKIKMYLKKYG-KLLQEEFIEGKEVQAAIM 185

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           G  +L   EI   ++ +        +  + H++PA +   IY +V ++A  AH+ + C+G
Sbjct: 186 GSKALGAIEIKPSRNFYDYNAKYSHNAKTKHIMPANLEKKIYNKVLQIALRAHKCLSCKG 245

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ++RSDF       +++ LE N QPGMTP+S+ PE+A Y+G +F EL+ WMV D S  R
Sbjct: 246 VTRSDFRVT-RDNEIYILETNTQPGMTPLSLVPEIAEYSGIAFVELIKWMVLDVSTNR 302


>gi|240116303|ref|ZP_04730365.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID18]
 gi|240128803|ref|ZP_04741464.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-93-1035]
 gi|260439880|ref|ZP_05793696.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI2]
 gi|268601970|ref|ZP_06136137.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268687185|ref|ZP_06154047.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291043156|ref|ZP_06568879.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
 gi|268586101|gb|EEZ50777.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID18]
 gi|268627469|gb|EEZ59869.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-93-1035]
 gi|291012762|gb|EFE04745.1| D-alanylalanine synthetase [Neisseria gonorrhoeae DGI2]
          Length = 304

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSIYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301


>gi|118445023|ref|YP_879025.1| D-alanyl-alanine synthetase A [Clostridium novyi NT]
 gi|166198481|sp|A0Q323|DDL_CLONN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118135479|gb|ABK62523.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Clostridium novyi NT]
          Length = 343

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 157/333 (47%), Gaps = 37/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+L GG S+E EVS  S  +    ++ + + V  I + +                    
Sbjct: 5   VAILFGGQSTEHEVSRVSASSVLKNIDLSKYDVYPIGITKDGKWFEYTGAIDKIESGEWE 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       +L + + D+ F V+HG +GEDG +Q + +LL IP    G+++SA+ MD
Sbjct: 65  KDEFYKNPNGQEILFNREVDVVFPVMHGLYGEDGTIQGLCKLLTIPCVGPGVMSSAVCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIV 143
           K+ +K V+ + GV     ++VN     +         ++ +     IKP   GSS+GI  
Sbjct: 125 KVYTKYVLENFGVKQADYVVVNAHDYKNNKMDIISTIENKLGYDVFIKPSNSGSSVGISK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               + +   L ++  ++    + +      IE+      +         VP ++FY YE
Sbjct: 185 AHNREELEAGLEEALKFDRKVLVEVALNAREIEVAVLGNDEPVAATPGEIVPANEFYDYE 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KYS+  S  +LPA +  +  ++V+ LA    + + C G+SR DFL D  + +V+  EIN
Sbjct: 245 AKYSNAQSKLLLPANLSPEKLEKVKELAVRIFKMLDCAGMSRVDFLVDKETEEVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T +S++P+M    G ++ EL+  ++E A
Sbjct: 305 TIPGFTKISMYPKMWQAEGKAYGELISEIIELA 337


>gi|78046388|ref|YP_362563.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vesicatoria
           str. 85-10]
 gi|325925685|ref|ZP_08187063.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|78034818|emb|CAJ22463.1| D-alanine--D-alanine ligase B [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543901|gb|EGD15306.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 318

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 107/302 (35%), Positives = 161/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AEAIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEAETQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|327479645|gb|AEA82955.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri DSM 4166]
          Length = 314

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 164/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGRSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     +        
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +  ++  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAA--WRAASAYDAQVLVEQWIHGPEFT 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P +  Y Y+ KY + ++ + +P  +     +E++ L+  A +A+
Sbjct: 194 VAVLHGEVLPPIGLGTPHTF-YDYDAKYLASDTQYRIPCGLDAAREEELKVLSARACEAV 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG +R D + D      + LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|242278456|ref|YP_002990585.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
 gi|259645165|sp|C6C0B2|DDL_DESAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|242121350|gb|ACS79046.1| D-alanine/D-alanine ligase [Desulfovibrio salexigens DSM 2638]
          Length = 302

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 152/296 (51%), Gaps = 7/296 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           ++ GG S EREVSLS  K    AL + G  V  +D  +    +L      D AF  LHG+
Sbjct: 5   LIAGGWSEEREVSLSGAKGIEQALLELGHDVEFVDPAKDFKNILLLAEHADFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS 120
            GEDGL+QA+L  +  PY  +   +S L+++K  +K V    G+       +        
Sbjct: 65  PGEDGLIQAMLNQVNCPYQGAEPESSFLTLNKAATKTVFDHHGILTPKWELVCAADGCKG 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              + PP  IKP  GGSSLG+   +  + +   +      + GD  L+E+Y  GIE+TCG
Sbjct: 125 LQDLEPPVFIKPNSGGSSLGMTFARTAEELEKGIETVF--SLGDSALVEEYTKGIEVTCG 182

Query: 181 VMGDASLDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           ++    + +  I  P + +F+ Y  KY+   +  + PA I   + +++Q++   AH+ +G
Sbjct: 183 ILDGEPMPLILINPPDNAEFFDYHSKYALDGAEEICPAPIDPVLTEQIQQITAKAHKLLG 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               SR+DF+        + LE+N  PGMTP S+ P+ A  AGYSF EL+  ++E 
Sbjct: 243 LTDYSRADFIISE--GVPYLLEVNTLPGMTPTSLVPQAAKEAGYSFNELIAKLIEL 296


>gi|332982128|ref|YP_004463569.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
 gi|332699806|gb|AEE96747.1| D-alanine--D-alanine ligase [Mahella australiensis 50-1 BON]
          Length = 360

 Score =  183 bits (464), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/346 (26%), Positives = 154/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S  +    ++   ++   I + +    +L              
Sbjct: 6   IAVLFGGRSGEHEVSLMSAVSVLRNMDKDKYEPIMIGITKEGRWMLYEGALEDIEENRWQ 65

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D  F VLHG  GEDG VQ +LEL +IPY   
Sbjct: 66  ISARPVVLAPDPSYKGFIDIKRDCTFIPVDAVFPVLHGPHGEDGTVQGLLELADIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+L+MDK+ SK+V    G+ V                      +  +  P  +KP 
Sbjct: 126 GVLASSLAMDKVLSKEVFLRHGLRVAEYTSTIYEHFKVTPKVFVSVAETKLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTE 191
             GSS+GI        +   +  +    +  ++L+E+++DG  IE               
Sbjct: 186 NMGSSVGITKAHNRDELMEAIELAG--KYDRKILVEEFIDGHEIECAVLGNDYPEASTVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             VP ++FY Y  KY     +  V+PA +P+D+ +EV+R+A  A++A+ C G++R DFL 
Sbjct: 244 QIVPCNEFYDYNAKYFDEGKSGLVIPADLPIDVMEEVRRMAVEAYRALDCAGMARVDFLV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 ++  E+N  PG T +S++P++   +   + +L+  ++E A
Sbjct: 304 KKSDNTIYLNEVNTIPGFTKISMYPKLWDASSLPYDKLIDRLIELA 349


>gi|254467845|ref|ZP_05081251.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
 gi|207086655|gb|EDZ63938.1| D-alanine--D-alanine ligase [beta proteobacterium KB13]
          Length = 299

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 161/298 (54%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ER++S+ SG A   AL++  ++VS ID   +    L  +  D AF  LHG
Sbjct: 6   IALLSGGDSEERDISIKSGLAVYQALKNLNYEVSLIDPINTDLCSL--VNYDAAFICLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++LELL++P+T S   AS L+M+K  SK V ++  +     +++N+  +D 
Sbjct: 64  KNGEDGKIQSLLELLKVPFTGSASTASMLAMNKYYSKLVWNNHALITPKFLILNKTNLDY 123

Query: 121 QHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           + +I+    P+++KP   GSS GI ++K    + L    + +  +   ++ E++++G E 
Sbjct: 124 KKIITHLSDPFIVKPSSSGSSFGINLVKNKDDLILAF--TDASKYDPTVIAEEFIEGREF 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  +              K++FY Y  KY S  +    P  +  ++ ++++ +A  A  +
Sbjct: 182 TVSI-LGNKSLGVLEITTKNEFYDYNAKYVSNETIFSKPTDLNPEVLEKMENIALSAFIS 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           IGC G  R DF+ D      + +E+N  PGMT  S+FP  A  AG +F + +  +V+ 
Sbjct: 241 IGCSGWGRVDFMMDKKFN-FYLIEVNTVPGMTDHSLFPLAARNAGLNFEQTVQHIVDL 297


>gi|58583447|ref|YP_202463.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|58428041|gb|AAW77078.1| D-alanine-D-alanine ligase B [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 318

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 11/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 116 --FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHVAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 E 294
           E
Sbjct: 315 E 315


>gi|59801867|ref|YP_208579.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA 1090]
 gi|194099345|ref|YP_002002445.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae NCCP11945]
 gi|239999602|ref|ZP_04719526.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|240014777|ref|ZP_04721690.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae DGI18]
 gi|240017225|ref|ZP_04723765.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA6140]
 gi|240081138|ref|ZP_04725681.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|240113350|ref|ZP_04727840.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae MS11]
 gi|240118590|ref|ZP_04732652.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID1]
 gi|240121300|ref|ZP_04734262.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID24-1]
 gi|240124133|ref|ZP_04737089.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae PID332]
 gi|240126251|ref|ZP_04739137.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae SK-92-679]
 gi|254494317|ref|ZP_05107488.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268595413|ref|ZP_06129580.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268597249|ref|ZP_06131416.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268599424|ref|ZP_06133591.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268604301|ref|ZP_06138468.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268682758|ref|ZP_06149620.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268684832|ref|ZP_06151694.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|293398492|ref|ZP_06642670.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|75355611|sp|Q5F6M0|DDL_NEIG1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485968|sp|B4RQC3|DDL_NEIG2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59718762|gb|AAW90167.1| putative D-alanine--D-alanine ligase [Neisseria gonorrhoeae FA
           1090]
 gi|193934635|gb|ACF30459.1| D-alanylalanine synthetase [Neisseria gonorrhoeae NCCP11945]
 gi|226513357|gb|EEH62702.1| D-alanylalanine synthetase [Neisseria gonorrhoeae 1291]
 gi|268548802|gb|EEZ44220.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae 35/02]
 gi|268551037|gb|EEZ46056.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae FA19]
 gi|268583555|gb|EEZ48231.1| D-alanylalanine synthetase [Neisseria gonorrhoeae MS11]
 gi|268588432|gb|EEZ53108.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID1]
 gi|268623042|gb|EEZ55442.1| D-alanylalanine synthetase [Neisseria gonorrhoeae PID332]
 gi|268625116|gb|EEZ57516.1| D-alanylalanine synthetase [Neisseria gonorrhoeae SK-92-679]
 gi|291610963|gb|EFF40060.1| D-alanine-D-alanine ligase [Neisseria gonorrhoeae F62]
 gi|317164854|gb|ADV08395.1| D-alanine--D-alanine ligase [Neisseria gonorrhoeae TCDC-NG08107]
          Length = 304

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKERGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLYDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKAA 301


>gi|299768393|ref|YP_003730419.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
 gi|298698481|gb|ADI89046.1| D-alanine--D-alanine ligase [Acinetobacter sp. DR1]
          Length = 308

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 102/299 (34%), Positives = 156/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLFGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +LE L +PYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T  
Sbjct: 67  GRGGEDGQIQGVLEWLNLPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 120 SQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DAVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKNLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G     R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 245 AVGAESWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|91786975|ref|YP_547927.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
 gi|123165280|sp|Q12EL3|DDL_POLSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91696200|gb|ABE43029.1| D-alanine--D-alanine ligase [Polaromonas sp. JS666]
          Length = 338

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 100/304 (32%), Positives = 163/304 (53%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+ERE+SL SG+    AL   G      D        L   +    F  LHG
Sbjct: 24  VAVLMGGMSAEREISLMSGRGVLQALRSRGVDAHAFDPAERDISELKKDEFARCFIALHG 83

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+V+ + G+P    +L+ R +  S
Sbjct: 84  RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRVMLAEGLPTPTYVLLRRGSYGS 143

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++KP + GSS+G+  + +   +   + Q+   +    +L EQ++ G
Sbjct: 144 ADVSAVPDKLGLPLIVKPAREGSSIGLTKVTERAGMADAVAQAEKLDAD--ILCEQFISG 201

Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC       +A        V     Y Y+ KY +  + +++P  +P      +Q+L 
Sbjct: 202 DEVTCPVLGTGSEARALPVIRIVAPDGNYDYQNKYFTDTTQYLVPCGLPEGEEAVIQQLV 261

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++ + CRG +R+D + D ++RK + LEIN  PGMT  S+ P  A  AG S+ +L + 
Sbjct: 262 LQAYRTLNCRGWARADVMIDKVTRKPYLLEINTSPGMTGHSLVPMSARAAGISYEDLCIE 321

Query: 292 MVED 295
           +++ 
Sbjct: 322 VLKT 325


>gi|256751680|ref|ZP_05492555.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|307265111|ref|ZP_07546671.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|256749489|gb|EEU62518.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|306919909|gb|EFN50123.1| D-alanine/D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 359

 Score =  183 bits (463), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  I + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGITKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  ++    I         P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  +  ++ +P  L  ++ ++    +        IE +     +    +    V
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPQASIAGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P ++FY Y  KY     + + +PA +P +  +EV++LA  A++A+  RG++R DFL D  
Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMDRN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  ++  E+N  PG T +S++P++   +G  +  LL  ++  A
Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348


>gi|239825776|ref|YP_002948400.1| D-alanyl-alanine synthetase A [Geobacillus sp. WCH70]
 gi|239806069|gb|ACS23134.1| D-alanine/D-alanine ligase [Geobacillus sp. WCH70]
          Length = 364

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 156/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49
           + +L GG S E  VSLS+  A  +A++   F V  I +      +           +  L
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKNKFDVIPIYITTEGQWIKGERLTGKVNDIKQL 64

Query: 50  KP-----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           +                              D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSDAKAIIPVALNQTPAVADGKKQEEAVVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     +   +              +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSRNEEAAYDKVEQELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +     ++    +  ++++E+ + G E+        D    V
Sbjct: 185 PANAGSSVGITKCKQRDDLKAAFAEAF--KYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF 
Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTKEQYETIKQMAITAFKALDLSGLVRADFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 + +  EIN  PG TP S+FP +  ++G S+ EL+  +++ A
Sbjct: 303 LTE-DGEAYINEINTMPGFTPYSMFPLLWKHSGVSYPELIERLIQLA 348


>gi|166710654|ref|ZP_02241861.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 318

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGTS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GDA+L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDAALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|206972463|ref|ZP_03233408.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|229181827|ref|ZP_04309135.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|206732623|gb|EDZ49800.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|228601625|gb|EEK59138.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
          Length = 304

 Score =  183 bits (463), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGVPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|261401752|ref|ZP_05987877.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313667819|ref|YP_004048103.1| D-alanine--D-alanine ligase B [Neisseria lactamica ST-640]
 gi|269208126|gb|EEZ74581.1| D-alanine--D-alanine ligase B [Neisseria lactamica ATCC 23970]
 gi|313005281|emb|CBN86714.1| D-alanine--D-alanine ligase B [Neisseria lactamica 020-06]
          Length = 304

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAHAFDPKETPLSELKERGFQTAFNTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  +   
Sbjct: 67  VYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDSDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKEKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  PA+   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPSIH-IIPATEFYDYEAKYNRDDTVYQCPAEDLGEAEETLMRSLAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAAGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAARTGVGFADLCIEILKTA 301


>gi|327399131|ref|YP_004340000.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
 gi|327181760|gb|AEA33941.1| D-alanine--D-alanine ligase [Hippea maritima DSM 10411]
          Length = 294

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 154/298 (51%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVL 58
           +AV+ GG SSERE+S+ +G A  + L    F+   I  D  R     +    P + F  L
Sbjct: 3   VAVVCGGNSSEREISIITGNAVYNGLLKN-FEAECIVCDNARDCLDKIIKSSPSVVFIAL 61

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGE+G +QA LE L I +T      S ++M+K  +K ++    +P     L+ +   
Sbjct: 62  HGGFGENGQLQAALESLGIKHTGCSFAESNIAMNKFATKAILKKLSIPTAEFKLI-KKVE 120

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +++   P  IKP   GSS+ +             +  +     ++L+IE+ + G ELT
Sbjct: 121 EIENIDFYPICIKPNNEGSSVDVNFANN--ENQAKYISQNLLKKHNELIIEKRLSGKELT 178

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            GV+   +L       PKS FY Y+ KY+   + +++PA +  +I K ++ +A  A +AI
Sbjct: 179 VGVLFGKAL-PIIEIRPKSGFYDYKNKYTKGATDYIVPAPLENNIEKLIKDIAVKAFEAI 237

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC+  +R DF+ D      + LEIN  PGMTP S+ P+ A  AG SF EL   +VE A
Sbjct: 238 GCKSYARIDFILD--GNVPYLLEINTIPGMTPTSLLPKAAKAAGISFEELTKMIVEGA 293


>gi|164688446|ref|ZP_02212474.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
 gi|164602859|gb|EDQ96324.1| hypothetical protein CLOBAR_02091 [Clostridium bartlettii DSM
           16795]
          Length = 301

 Score =  182 bits (462), Expect = 4e-44,   Method: Composition-based stats.
 Identities = 89/298 (29%), Positives = 144/298 (48%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLH 59
           + V+MGGISSEREVSL+SGK+  SA+    + V ++ +D  + +V       D A  +LH
Sbjct: 5   VVVIMGGISSEREVSLNSGKSVLSAINRDKYDVHELIIDEPMDVVNKMPEGVDFALLILH 64

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRF 116
           G +GEDG +QA+LE + I Y+    L S + MDK  SK+V+ +  +P  P  +    +  
Sbjct: 65  GKYGEDGTIQAMLESMGIKYSGCDPLTSGICMDKNMSKKVLKASNIPTAPWTIAKSLDSI 124

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D+   +  P  IKP  GGSS+    + + + +   + Q       D ++IE Y+ G E
Sbjct: 125 DYDAIEKMGYPVFIKPNSGGSSVATFKVDRKEDVYEAVRQGLEV--DDIVMIEGYLPGDE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++        +I+ P   F       +   +       +  ++  E+   +     
Sbjct: 183 YTSFILNGEVFPTIKISSPNEFFDYESKYATGAKAATEEVVYLEENLQNEINLRSEECWD 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A  CR   R DF+    + K + LE+N  PGMT  S+ P  A   G S+ EL+  ++E
Sbjct: 243 AFNCRAFVRVDFIL--SNGKFYVLELNTLPGMTKTSLIPRSANAKGISYSELIDKIIE 298


>gi|83312950|ref|YP_423214.1| D-alanine--D-alanine ligase [Magnetospirillum magneticum AMB-1]
 gi|123540758|sp|Q2W0H0|DDL_MAGSA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|82947791|dbj|BAE52655.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Magnetospirillum magneticum AMB-1]
          Length = 305

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 137/306 (44%), Positives = 190/306 (62%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D DR+   +   +   +PD+ FN 
Sbjct: 5   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVALVDCDRNPAELVRAITETRPDVVFNA 64

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ + +S G+PV    ++ R  
Sbjct: 65  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKAFARALFASAGIPVAEGRVITRTD 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P+V+KPL  GSS+G+ +++ +Q  PL           D++L+E ++ G EL
Sbjct: 125 RNGPDPLPRPFVVKPLNEGSSVGVFIVRDNQPSPL----PDWPFDADEVLVESFIPGREL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD +L           FY YE KY+   S H++PA IP   Y E  RLA  AH+A
Sbjct: 181 TAAVMGDRAL-GVLEITSDHGFYDYEAKYAPGGSRHLMPAPIPEADYAEACRLAVAAHKA 239

Query: 238 IGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GCRG+SR+D  +D        ++  LE+N QPGMT  S+ PEMAAY G +F EL+ WMV
Sbjct: 240 LGCRGVSRADLRYDDTVPGQPPRLVMLEVNTQPGMTATSLVPEMAAYQGITFPELVRWMV 299

Query: 294 EDASCL 299
           E+A C 
Sbjct: 300 EEARCD 305


>gi|261418546|ref|YP_003252228.1| D-alanyl-alanine synthetase A [Geobacillus sp. Y412MC61]
 gi|319765360|ref|YP_004130861.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
 gi|261375003|gb|ACX77746.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC61]
 gi|317110226|gb|ADU92718.1| D-alanine/D-alanine ligase [Geobacillus sp. Y412MC52]
          Length = 367

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50
           + VL GG S E +VSLS+  A  +A++   F V  I +      +        +  +K  
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 51  ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFTQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +    +++    +  +++IE+ + G E+        +    V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--QYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A QA+   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|294102452|ref|YP_003554310.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293617432|gb|ADE57586.1| D-alanine/D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 328

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 104/304 (34%), Positives = 155/304 (50%), Gaps = 14/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           +AVL GG   EREVSL SG A  SALE+AGFKV   D+     +  +      D  F  L
Sbjct: 17  VAVLYGGDGPEREVSLKSGAAVVSALEEAGFKVVPFDITDLGQLSDLRKTGHIDSVFIAL 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------L 112
           HG++GEDG VQ+ L+ L +PY+ SG LA  LSMDK  +K +++  GVP    +       
Sbjct: 77  HGSWGEDGRVQSALDALRLPYSGSGSLACCLSMDKAATKGLLNLFGVPTPEGVLVLKGSS 136

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +              V+KP  GGS+LG+ V+   Q +      + +W +  + +IE+Y+
Sbjct: 137 FSLEKARHFAERHHSVVVKPCNGGSTLGVTVVHNSQGLSDAF--NEAWKYDSRCVIEKYI 194

Query: 173 DGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG++L   V             +  P+  FY Y+ KY+   + +++PA     I  ++ +
Sbjct: 195 DGVDLAVTVWKQKGYLEALPEVMICPEKGFYDYDSKYTPGKTRYIVPAPFDPSIRSDIHQ 254

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A +A+ C G +R DF         + LE+N  PGMT  S+ P+ AA AGY F   L
Sbjct: 255 MACRAFEALSCEGYARVDFRV-EEKGTPWVLEVNTAPGMTGTSLTPKAAAAAGYDFPAFL 313

Query: 290 LWMV 293
             +V
Sbjct: 314 SHVV 317


>gi|156741078|ref|YP_001431207.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
 gi|156232406|gb|ABU57189.1| D-alanine--D-alanine ligase [Roseiflexus castenholzii DSM 13941]
          Length = 371

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 106/361 (29%), Positives = 165/361 (45%), Gaps = 63/361 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------LAHLKP 51
           + VL GG S E EVSL S +A    L+   + V+ I + +    +         LA   P
Sbjct: 7   VGVLFGGQSGEHEVSLVSARAVMDGLDPERYDVTPIGITKHGRWIIAPDAHTRLLAQADP 66

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG  GEDG VQ 
Sbjct: 67  AKLPGGSSAGAADAADGVDDVETTDPLTLMVAGEQSPLKTLDVVFPVLHGPMGEDGTVQG 126

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121
           +LEL+EIPY   G++ASA+ MDK  +K   S  G+PV P +L+ R              +
Sbjct: 127 LLELMEIPYVGCGVMASAVGMDKAMTKVAFSGAGLPVLPWLLIRRREWEREPAHVLDWVE 186

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             ++ P  +KP   GSS+G  + K      L    + +  +  ++++EQ +   E+   +
Sbjct: 187 QRLTYPMFVKPANLGSSVG--ISKVTGRAALARGIAEAAAYDRRIVVEQGIPAREIEVSI 244

Query: 182 MGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G+   + +     VP  ++Y YE KY S  S  ++PA I L++   V+RLA  A +AI 
Sbjct: 245 LGNNEPEASVPGEVVPSGEWYDYEAKYLSGASKILIPAPITLELAARVRRLAVQAFKAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  + +LL  ++E A   
Sbjct: 305 GAGLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWEASGLPYTQLLDRLIELALER 364

Query: 300 R 300
           R
Sbjct: 365 R 365


>gi|295402558|ref|ZP_06812507.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312112530|ref|YP_003990846.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
 gi|294975406|gb|EFG51035.1| D-alanine/D-alanine ligase [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311217631|gb|ADP76235.1| D-alanine/D-alanine ligase [Geobacillus sp. Y4.1MC1]
          Length = 364

 Score =  182 bits (462), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49
           + +L GG S E  VSLS+  A  +A++   F V  I +      +           +  L
Sbjct: 5   VGILYGGKSPEHNVSLSTAMAVMNAIDKTKFDVIPIYITTEGQWIKGERLTGQVTEIKQL 64

Query: 50  KP-----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           +                              D+ F +LHG  GEDG VQ +LELL IPY 
Sbjct: 65  QFQSEAKAIIPVALNQTPTAADGKKQEEAAVDVIFPLLHGPNGEDGTVQGLLELLNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     +   +              +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSFTKREWSKNEEAAYDKVEQALGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +     ++    +  ++++E+ + G E+        D    V
Sbjct: 185 PANAGSSVGITKCKRRADLQAAFAEAF--KYDRKIIVEEAIVGREIEIGVIGNDDPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY Y+ KY   N+  ++PA +  + Y+ ++++A  A +A+   G+ R+DF 
Sbjct: 243 VGEIVPKKEFYDYQAKYEDGNTELIIPADVTSEQYETIKQMAITAFKALDLSGLVRADFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 +V+  EIN  PG TP S+FP +  ++G S+ EL+  +V+ A
Sbjct: 303 L-GEDGEVYINEINTMPGFTPYSMFPLLWKHSGISYPELIERLVQLA 348


>gi|182419791|ref|ZP_02951031.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237666531|ref|ZP_04526516.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182376339|gb|EDT73921.1| D-alanine--D-alanine ligase B [Clostridium butyricum 5521]
 gi|237657730|gb|EEP55285.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 301

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 159/299 (53%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL+SGK+    +    ++V  I +D+   +V      D A   LHG
Sbjct: 3   IGVIMGGISSEREISLNSGKSIVENINKDKYEVEAIVIDKKEDIVTKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQA+L+ L IPY+  G L+SA+ MDK  +K ++ +  +   P I     ++  
Sbjct: 63  QFGEDGTVQAVLQTLGIPYSGCGPLSSAMCMDKDVTKSILQAAKIRTAPWINLSKNDKID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D+   +  P V+KP  GGSS+   ++K+++ I   + +   W    +++IE+++ G E+
Sbjct: 123 YDAIKKLGYPVVVKPTHGGSSVATFIVKEEKEIEECVKEGFKW--DSEVMIEKFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V GD  L V  I      F               +  ++  ++++EV+++A   ++A
Sbjct: 181 TCPVYGDRMLPVIAIKPKAEFFD--FASKYQDGGAEEVVVELDKNLHEEVEKMALATYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR D +        + LE+N  PGMT  S+ P+ AA     F +L+  ++ED+
Sbjct: 239 LKCEVYSRVDMIVTT-DGVPYILEVNTLPGMTKNSLIPKSAAAVNIDFAQLVDMIIEDS 296


>gi|56418758|ref|YP_146076.1| D-alanyl-alanine synthetase A [Geobacillus kaustophilus HTA426]
 gi|81348304|sp|Q5L3H2|DDL_GEOKA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56378600|dbj|BAD74508.1| D-alanine-D-alanine ligase [Geobacillus kaustophilus HTA426]
          Length = 367

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 92/347 (26%), Positives = 156/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50
           + VL GG S E +VSLS+  A  +A++   F V  I +      +        +  +K  
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 51  ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKRGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +    +++    +  +++IE+ + G E+        +    V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--QYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A Q +   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQVLDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|262370858|ref|ZP_06064182.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
 gi|262314220|gb|EEY95263.1| D-alanine-D-alanine ligase B [Acinetobacter johnsonii SH046]
          Length = 309

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG A   AL  +G      D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAEREVSLDSGAAVLEALVRSGVNAEAFDPQERSVTEL--VGYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQV     +P  P  ++++ +  +
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQVWQGSDLPTAPYRIISQESDLA 127

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +IKP+  GSS+G+  ++K + +   + +++   H   ++ E+++ G E T
Sbjct: 128 EVVANLGLPLIIKPVHEGSSVGMSKVEKAEDLAAAIAKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +  +  +++Q L   A QA
Sbjct: 186 ISFLDGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSTEEEQKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF  L + ++E 
Sbjct: 246 VGASGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAANAVGYSFDALCVQILEQ 302


>gi|308048070|ref|YP_003911636.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
 gi|307630260|gb|ADN74562.1| D-alanine--D-alanine ligase [Ferrimonas balearica DSM 9799]
          Length = 306

 Score =  182 bits (461), Expect = 5e-44,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 147/299 (49%), Gaps = 12/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L+  G      D        L     D AF VLHG
Sbjct: 10  VAVLFGGTSAEREVSLRSGAAVLAGLQRGGVDAHPFDPAERSLDELK--GFDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG VQ  LEL++IPYT S +L  A++MDK+R+K + +  G+P              
Sbjct: 68  RGGEDGTVQGALELMKIPYTGSRVLGCAVAMDKVRTKWLWAGLGLPTADFEVVDKESFSP 127

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +  P ++KP   GSS+G+   +   S+   +   ++  + D +L+E +V G
Sbjct: 128 NSAEDIMARLGSPVMVKPACEGSSIGMAKAEDAASLQKAI--DTALQYDDTVLVEAWVHG 185

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++G+ +L    +  P    Y YE KY S  + +  PA +  D  + ++ LA  A
Sbjct: 186 PEFTVSILGEEALPAIRMETPNVF-YDYEAKYQSQTTQYHCPAGLSDDDEQALRALALRA 244

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +A+G  G  R D + D        LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 245 FKAVGASGWGRVDVMRDA-DGSWRLLEVNTVPGMTETSLVPKAANAVGVDFDTLVARIL 302


>gi|58584827|ref|YP_198400.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
 gi|81311624|sp|Q5GS66|DDL_WOLTR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58419143|gb|AAW71158.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont strain TRS of
           Brugia malayi]
          Length = 339

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 104/311 (33%), Positives = 162/311 (52%), Gaps = 15/311 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S ER++SL SGKA   AL+   +   +IDV+ +    L  + PDLAF  LHG
Sbjct: 19  ITILSGGFSRERKISLMSGKAVKKALDSLSYNAIEIDVNSNTAEKLKKINPDLAFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++M+K  SK +  S G+      I+     + 
Sbjct: 79  PYGEDGCIQGLLEILGIKYTHSGVMASAIAMNKAMSKHIFRSLGIDTPKGYIISRGDILK 138

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +   I  PYV+KP+  GSS+G+ +    +    +          + G +     ++    
Sbjct: 139 NNIKIDYPYVLKPINEGSSIGVHITFSHEDYLKLKNMFSVIPVHDAGIEEEEPVWITRDL 198

Query: 177 LTCGVMGDASLDV----------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +                      T    PK+ FY Y+ KY++  + H+ PA+IP +IY+ 
Sbjct: 199 MIIEEYIPGIELHTAVLLDEAAGTMEIRPKNKFYDYKAKYTNGFAEHIFPAEIPDNIYEM 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSF 285
               A   H+ +GC+ ISRSDF ++P    +  LEIN  PG T +S+ PE+A    G  F
Sbjct: 259 TLEHALKVHRFLGCKTISRSDFRYNPKDNTLKMLEINTHPGFTELSLVPEIAKLTKGIDF 318

Query: 286 RELLLWMVEDA 296
            EL+  ++ED+
Sbjct: 319 NELVKIIIEDS 329


>gi|184159849|ref|YP_001848188.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|239503826|ref|ZP_04663136.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB900]
 gi|260550190|ref|ZP_05824403.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260557902|ref|ZP_05830115.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|332872845|ref|ZP_08440810.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
 gi|229485849|sp|B2I1J3|DDL_ACIBC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485853|sp|A3M9X9|DDL_ACIBT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183211443|gb|ACC58841.1| D-alanine-D-alanine ligase [Acinetobacter baumannii ACICU]
 gi|193078671|gb|ABO13723.2| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 17978]
 gi|260406718|gb|EEX00198.1| D-alanine-D-alanine ligase B [Acinetobacter sp. RUH2624]
 gi|260408693|gb|EEX01998.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii ATCC 19606]
 gi|322509763|gb|ADX05217.1| ddlB [Acinetobacter baumannii 1656-2]
 gi|323519776|gb|ADX94157.1| D-alanine--D-alanine ligase [Acinetobacter baumannii TCDC-AB0715]
 gi|332739006|gb|EGJ69868.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6014059]
          Length = 308

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 104/299 (34%), Positives = 156/299 (52%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P   I      
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 302


>gi|323142001|ref|ZP_08076852.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
 gi|322413533|gb|EFY04401.1| D-ala D-ala ligase N-terminal domain protein [Phascolarctobacterium
           sp. YIT 12067]
          Length = 315

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 151/308 (49%), Gaps = 14/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV++GG SSE E+S  +G A A+AL + G+   +++++  ++   L  +   + FN +H
Sbjct: 9   VAVVLGGPSSEAEISRVTGGAIANALREKGYNAKEVELNPSNLINELRDMNAKVVFNAVH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--------SCGVPVCPSI 111
           G +GEDG +Q+ILE   IPYT  G+LASA+SMDK  +K+ +            +    + 
Sbjct: 69  GMYGEDGRLQSILEAAGIPYTGCGVLASAVSMDKSATKRYLQSAGIPTAPCMIINKRDAG 128

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +             P VIK    GSS+G+++ K  Q +   L ++    + + +L E+ 
Sbjct: 129 DLQTLAEKIISEFGLPVVIKAATQGSSIGVVIPKTAQEVVPALEEAF--KYSENVLAEKC 186

Query: 172 VDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + G ELT  +M +             P S  Y +  KY+   + +  PA         +Q
Sbjct: 187 IKGKELTISIMEENGEPKPLPVIWIAPHSGAYDFHSKYTKGATDYHCPAPFDEKTTAYIQ 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A   ++ +G  G++R D +        + LE N  PGMT  S+ P+ AA  G SF EL
Sbjct: 247 KIAVETYKLLGLSGVARVDAMLGDEDGVAYVLEANTVPGMTATSLVPKAAAAVGISFPEL 306

Query: 289 LLWMVEDA 296
              ++  A
Sbjct: 307 CEKILLSA 314


>gi|228921296|ref|ZP_04084622.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|229190695|ref|ZP_04317691.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228592828|gb|EEK50651.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228838355|gb|EEM83670.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 304

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|326390825|ref|ZP_08212377.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325993084|gb|EGD51524.1| D-alanine/D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 359

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 160/343 (46%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E EVSL S K+  + L+   +++  I + +     L              
Sbjct: 6   IAVLFGGQSGEHEVSLMSAKSIINNLDKDKYEIYMIGIAKKGEWYLYRGDVEKIETGEWE 65

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG  GEDG +Q +LELL+IPY  
Sbjct: 66  KEGIPATMGASTKYRGIITFEDGKNGFYPIDVVFPVLHGPNGEDGTIQGLLELLDIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PPYVIKPLK 134
           + +L+SAL MDK+ +K++    G+P    ++V R  ++    I         P  +KP  
Sbjct: 126 ANVLSSALCMDKVFTKRIFKEAGLPTPDFVVVYRKEIEDLEAIKKKVEHLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  +  ++ +P  L  ++ ++    +        IE +     +    +    V
Sbjct: 186 LGSSVGITKVHNEEELPGALKLAAKYDRKLLIERGIDAREIECSVLGNENPQASIAGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P ++FY Y  KY     + + +PA +P +  +EV++LA  A++A+  RG++R DFL D  
Sbjct: 246 PSNEFYDYNAKYFDGGKSLLLIPAPLPDEKMEEVRQLAIKAYKALDLRGMARVDFLMDRN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  ++  E+N  PG T +S++P++   +G  +  LL  ++  A
Sbjct: 306 TGTLYLNEVNTIPGFTKISMYPKLWEVSGKPYSILLDELINLA 348


>gi|297528575|ref|YP_003669850.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
 gi|297251827|gb|ADI25273.1| D-alanine/D-alanine ligase [Geobacillus sp. C56-T3]
          Length = 367

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 93/347 (26%), Positives = 157/347 (45%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50
           + VL GG S E +VSLS+  A  +A++   F V  I +      +        +  +K  
Sbjct: 5   VGVLYGGKSPEHQVSLSTAMAVMNAIDPHKFDVIPIYITPEGQWIKGEQLTGPIEEIKQL 64

Query: 51  ------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L IPY 
Sbjct: 65  QFTSAATALIPVSLNQVPAADSAAGGNEETIDVIFPLLHGPNGEDGTVQGLLEILNIPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     I V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVMMKNLFAQAGLRQAKYIAVTKYDWQKSGETVYDRIERELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +    +++    +  +++IE+ + G E+        +    V
Sbjct: 185 PANAGSSVGISKCKQRGDLKAAFIEAF--KYDRKIIIEEAIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++++A  A QA+   G++R DF 
Sbjct: 243 VGEIVPKKEFYDYEAKYEDGQTELIIPADVTKEQYETIKQMAITAFQALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGAVYINEVNTMPGFTPYSMFPLLWQHSGVPYPELIERLIALA 348


>gi|229150808|ref|ZP_04279020.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228632597|gb|EEK89214.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 304

 Score =  182 bits (461), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  V L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKVDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|310642033|ref|YP_003946791.1| d-alanine--d-alanine ligase [Paenibacillus polymyxa SC2]
 gi|309246983|gb|ADO56550.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa SC2]
          Length = 305

 Score =  182 bits (461), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 162/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           + V+MGG S+EREVSL +G+   + L+ + ++V  I +D+   +   + H   D A   L
Sbjct: 3   IGVIMGGTSTEREVSLQTGQEMLNHLDRSRYEVVPIVIDQPADLIAQVQHTGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ S GV     +       
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKSAGVLTPAGLCWQGMGD 122

Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             Q     +  P ++KP  GGSS+GI ++  ++ +   + ++        +L+E ++ G 
Sbjct: 123 YDQQAVEQLGYPVIVKPNMGGSSIGIQLVHNEKELHSAIQKAC--ALDQTILVEPFIQGT 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           ELTC ++    L +  I    S+++ Y+ KY +  +   +  ++P  I + V+  A  ++
Sbjct: 181 ELTCSIVDGEVLPIIRIRSAHSEWFDYKAKYETGGAEEKV-IQLPPVIEQRVRETALASY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + C+  +R D +        + LE+N  PGMT  S+ P+ AA AG +F +LL  ++  
Sbjct: 240 RLLQCKVYARIDMILCQ--DVPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDRIITS 297

Query: 296 ASCLR 300
           +   R
Sbjct: 298 SLHER 302


>gi|71066304|ref|YP_265031.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
 gi|71039289|gb|AAZ19597.1| D-alanine--D-alanine ligase [Psychrobacter arcticus 273-4]
          Length = 366

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 98/296 (33%), Positives = 152/296 (51%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+ER VSL SG A   AL++ G   +  D        L     D  FNVLHG
Sbjct: 72  VAVIYGGNSNERSVSLDSGAAVLQALQNQGVDATHFDPKHQDITELRQ--YDRVFNVLHG 129

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDGL+Q +L+  +IP T SGILASAL MDK+R+KQ+   CG+   P   +       
Sbjct: 130 RGGEDGLLQGVLQWFDIPQTGSGILASALGMDKVRTKQLWQGCGLSTAPFSILTAETDWQ 189

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              +++  P +IKP+  GSS+G+  +     +P     +     GD ++ E+++ G E T
Sbjct: 190 QIVNMLGLPLIIKPVHEGSSIGMTKVSHLDELPAAYATAIQC--GDVVMAERWITGREFT 247

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++ D +  V  +     ++FY +E KY+  ++++ +P  +     K +Q L+  A +A
Sbjct: 248 IVIIDDEAYPVIRLEPADITNFYDFEAKYNRNDTSYYIPCGLSAIDEKHLQALSLSAFRA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G  R D + D      + LEIN  PGMT  S+ P  A   G  F  L   ++
Sbjct: 308 VEAKGWGRIDAMQDEAGN-FWLLEINTVPGMTSHSLVPMAAKARGIDFESLCWHIL 362


>gi|49474453|ref|YP_032495.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
 gi|81646935|sp|Q6FZ74|DDL_BARQU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49239957|emb|CAF26362.1| D-alanine--D-alanine ligase [Bartonella quintana str. Toulouse]
          Length = 306

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 145/311 (46%), Positives = 208/311 (66%), Gaps = 21/311 (6%)

Query: 1   MAVLMGG----------ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA  LE  G++VS++DVD  +  VL  L+
Sbjct: 6   VAVLMGGGSSERSVSLSS----------GTACADILEARGYRVSRVDVDSHIASVLERLQ 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+AFN LHG FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV V PS
Sbjct: 56  PDVAFNALHGPFGEDGCIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +++RF +  +H + PPYVIKPL  GSS G++++K+++S P   +  + W + D++++E+
Sbjct: 116 CIMSRFAVGREHPMEPPYVIKPLCEGSSFGVVIVKENESAPPRNVVGAEWVYADEVIVEK 175

Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G E TC V   +A             FY+Y+ KY S  S H+ PA++  +IY+ VQR
Sbjct: 176 YIPGREFTCAVLGNEALDVCEIFPDKHFQFYNYDSKYKSGGSLHICPAQLSPNIYQNVQR 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++  AHQAIGCRG+SRSDF F+  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++
Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFNEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIV 295

Query: 290 LWMVEDASCLR 300
            WMVEDASC+R
Sbjct: 296 QWMVEDASCMR 306


>gi|220931741|ref|YP_002508649.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
 gi|254767731|sp|B8CWI5|DDL_HALOH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219993051|gb|ACL69654.1| D-alanine--D-alanine ligase [Halothermothrix orenii H 168]
          Length = 343

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 44/340 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49
            VL GG S E EVS+ S ++     +   +KV    + +    V                
Sbjct: 7   GVLFGGRSQEHEVSVMSARSVVKMAKKEKYKVIPFGITKKGQWVGPEESWNILNNGINEV 66

Query: 50  ------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                             K D+ F VLHG +GEDG +Q  L+ L+IPY  + +L+SA  M
Sbjct: 67  KASKDRCITESVRVFLDHKLDIVFPVLHGPYGEDGKLQGFLDCLDIPYIGASVLSSAAGM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGII 142
           DK   K + S   +P     +  +            +    +  P  +KP   GSS+G+ 
Sbjct: 127 DKEIMKNLFSYHKIPQARYRVYRQNHLENGLDGIISEIDRFLGWPCFVKPANMGSSIGVS 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200
            +     +   L +     +  +L+ E++V+G E+ C V+G+  ++ +     +P  +FY
Sbjct: 187 KVHSPGEVKKALEKGFY--YDRKLIFEEFVEGREIECSVLGNDQVEASLPGEILPGKEFY 244

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KY    +  V+PA +   +  + + LA  A +AI   G +R DF     +  +   
Sbjct: 245 DYEAKYKDNKTRLVIPASLDESVIDKARNLAIKAFKAIDGNGFARVDFFL-KNNGVLLVN 303

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           EIN  PG T  S++P++    G ++ +L+  ++E A   R
Sbjct: 304 EINTIPGFTQYSMYPKLWEATGLNYPDLIDKLIELALEDR 343


>gi|49475852|ref|YP_033893.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
 gi|123720824|sp|Q6G2Q8|DDL_BARHE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30526097|gb|AAP32279.1| D-alanine D-alanine ligase B [Bartonella henselae str. Houston-1]
 gi|49238660|emb|CAF27906.1| D-alanine--D-alanine ligase [Bartonella henselae str. Houston-1]
          Length = 306

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 155/311 (49%), Positives = 216/311 (69%), Gaps = 21/311 (6%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA  LE  G++VS++DVD  +  VL  L+
Sbjct: 6   IAVLMGGFSSERSVSLSS----------GTACADVLEAQGYRVSRVDVDGHIASVLEQLQ 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+AFN LHG FGEDG +Q +LE L+IPYTHSG++ASAL+MDK R+K VV+S GV + PS
Sbjct: 56  PDIAFNALHGPFGEDGRIQGVLEYLKIPYTHSGVMASALAMDKGRAKIVVASVGVSIAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +++RF +  +H + PPYVIKP+  GSSLG+I++K+++S+P   +  S W + D +++E+
Sbjct: 116 CVMSRFAVGKEHPMEPPYVIKPVCEGSSLGVIIVKENESVPSLNVVGSEWVYADTVIVEK 175

Query: 171 YVDGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G ELTC VMG+ +LDV EI       FY Y+ KY S  S HV PA++  +IY+ VQR
Sbjct: 176 YIPGRELTCAVMGNKALDVCEILPEKHFQFYDYDSKYKSGGSLHVCPAQLSSNIYQNVQR 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++  AHQAIGCRG+SRSDF FD  + ++ WLEIN QPGMTP S+FP++A  +G ++ +++
Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEETGELVWLEINTQPGMTPTSLFPDIAKASGRTYGDIV 295

Query: 290 LWMVEDASCLR 300
            WMVEDASC+R
Sbjct: 296 QWMVEDASCMR 306


>gi|23014453|ref|ZP_00054268.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Magnetospirillum magnetotacticum MS-1]
          Length = 306

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 133/306 (43%), Positives = 189/306 (61%), Gaps = 12/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNV 57
           + VLMGG S+ER+VSL SG A A ALE AGF+V+ +D +R+   +   +   +PD+ FN 
Sbjct: 6   VTVLMGGASAERDVSLRSGAAAAKALEQAGFEVTLVDCNRNPAELVRAITETQPDVVFNA 65

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGEDG VQ +L LL +PYTHSG+LASA +MDK  ++ +  + G+PV    +V R  
Sbjct: 66  LHGRFGEDGCVQGVLNLLGVPYTHSGLLASAAAMDKGFARALFQAAGIPVAEGRVVTRAE 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P+V+KPL  GSS+G+ +++++Q  PL           D++L+E +V G EL
Sbjct: 126 STGPDPLPRPFVVKPLNEGSSVGVFIVRENQPSPLA----DWPFDADEVLVESFVPGREL 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  VMGD +L        +  FY YE KY+   S H++PA I    Y E  RLA  AH+A
Sbjct: 182 TVAVMGDKAL-GVLEITSEHGFYDYEAKYAPGGSRHIMPAPIASADYAEACRLAVAAHKA 240

Query: 238 IGCRGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +GCRG+SR+D  +D  +     ++  LE+N QPGMT  S+ PE+AA+ G +F  L+ WMV
Sbjct: 241 LGCRGVSRADLRYDDTTPGRPPRLVMLEVNTQPGMTATSLVPEIAAHQGITFPALVRWMV 300

Query: 294 EDASCL 299
           E+A C 
Sbjct: 301 EEARCD 306


>gi|148826247|ref|YP_001291000.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
 gi|190359137|sp|A5UCW6|DDL_HAEIE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148716407|gb|ABQ98617.1| D-alanine--D-alanine ligase [Haemophilus influenzae PittEE]
          Length = 297

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 109/299 (36%), Positives = 165/299 (55%), Gaps = 10/299 (3%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L+GG S+EREVS +SGKA   AL   G+    ID        L     + AFN+LHG  G
Sbjct: 2   LLGGTSAEREVSFNSGKAVLEALLKQGYNAHPIDPKEYNVANLKKDGFNRAFNILHGRGG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH- 122
           EDG +Q +LE + +PYT  G++ASAL+MDKMR+K +  + G+PV    +V R T      
Sbjct: 62  EDGTMQGLLEQIGLPYTGCGVMASALTMDKMRTKMLWKAFGLPVADMKVVTRETFAELDP 121

Query: 123 -----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++KP   GSS+G+  +K  + +   +    +    + +LIE+++ G EL
Sbjct: 122 QAVVAKLGLPLMVKPSLEGSSVGLTKVKAVEELKSAV--EYALKFDNTILIEEWLAGDEL 179

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+ +  L      VP+ +FY YE KY S N+ +  PA +  +  +E+  L   A+ A
Sbjct: 180 TVSVLDNQVLPAI-RIVPEGEFYDYEAKYISDNTQYFCPAGLTPEREQELAILVKRAYDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG SR D + D        +E+N  PGMT  S+FP+ AA  G SF +L++ ++E +
Sbjct: 239 VGCRGWSRIDVMCDAKGN-FRLVEVNTNPGMTSHSLFPKSAATVGISFEQLVVKILELS 296


>gi|218233071|ref|YP_002367292.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|229145195|ref|ZP_04273586.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296503144|ref|YP_003664844.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
 gi|218161028|gb|ACK61020.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|228638282|gb|EEK94721.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|296324196|gb|ADH07124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis BMB171]
          Length = 304

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + LV      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKIDLVEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|146281470|ref|YP_001171623.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
 gi|190359206|sp|A4VII0|DDL_PSEU5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145569675|gb|ABP78781.1| D-alanine--D-alanine ligase [Pseudomonas stutzeri A1501]
          Length = 314

 Score =  181 bits (460), Expect = 7e-44,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 163/298 (54%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG     ID    +   L+  + D AF VLHG
Sbjct: 16  VAVLFGGKSAEREVSLKSGAAVLAALQAAGVDAFGIDAGDDLLQRLSSERIDRAFIVLHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
             GEDG +Q +LE   IPYT SGILASAL+MDK+R+KQV  S G+P     +        
Sbjct: 76  RGGEDGSMQGLLECAGIPYTGSGILASALAMDKLRTKQVWQSLGLPTPRHAVLASEVDCQ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +  ++  P ++KP   GSS+G+  +     +       ++  +  Q+L+EQ++ G E T
Sbjct: 136 AAAQMLGFPLIVKPAHEGSSIGMAKVGDVAELIAA--WRAASAYDAQVLVEQWIQGPEFT 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+    L    +  P +  Y Y+ KY + ++ + +P  +     + ++ L+  A +A+
Sbjct: 194 VAVLHGEVLPPIGLGTPHTF-YDYDAKYLASDTQYRIPCGLDAAREEALKVLSARACEAV 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G RG +R D + D      + LE+N  PGMT  S+ P  A  AG  F++L+L +++D+
Sbjct: 253 GIRGWARVDVMQDAEGN-FWLLEVNTVPGMTDHSLVPMAARAAGLDFQQLVLSILDDS 309


>gi|78065123|ref|YP_367892.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77965868|gb|ABB07248.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 313

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL+SGK     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESSEREVSLTSGKLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDPIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P D   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPVIKIVPAGEFYDYHAKYIADDTQYLIPCGLPADKEAELKRVARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDA-DGNAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|115350519|ref|YP_772358.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
 gi|122324102|sp|Q0BIJ9|DDL_BURCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|115280507|gb|ABI86024.1| D-alanine--D-alanine ligase [Burkholderia ambifaria AMMD]
          Length = 313

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 150/299 (50%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307


>gi|168208103|ref|ZP_02634108.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170660612|gb|EDT13295.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
          Length = 302

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 93/300 (31%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++ +   +L  +K  D A   LH
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +   
Sbjct: 62  GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  +KP  GGSS+    + K + I   +       + ++++IE +V G E
Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAV--MEGLKYDEEVIIESFVKGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    +
Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|138893874|ref|YP_001124327.1| D-alanyl-alanine synthetase A [Geobacillus thermodenitrificans
           NG80-2]
 gi|196250552|ref|ZP_03149242.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
 gi|166198485|sp|A4IJS8|DDL_GEOTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134265387|gb|ABO65582.1| D-alanine-D-alanine ligase [Geobacillus thermodenitrificans NG80-2]
 gi|196209901|gb|EDY04670.1| D-alanine--D-alanine ligase [Geobacillus sp. G11MC16]
          Length = 364

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 153/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S E +VSLS+ +A  +A++   F V  I +      +               
Sbjct: 5   VGVLYGGKSPEHQVSLSTARAVMNAIDPHKFDVIPIYITPEGQWIKGKRLTGTVEEVKQL 64

Query: 47  --------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +LE+L +PY 
Sbjct: 65  QFTSTATAMIPVSLNQVPASGSATESDEETIDVIFPLLHGPNGEDGTVQGLLEMLNLPYV 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIK 131
            +G+LASA+ MDK+  K + +  G+     + V ++             +  +  P  +K
Sbjct: 125 GNGVLASAVGMDKVVMKNLFAQAGLRQAKYVSVTKYEWKKGGEAVYDRIEQELGYPCFVK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDV 189
           P   GSS+GI   K+   +     ++    +  +++IE+ + G E+        +    V
Sbjct: 185 PANAGSSVGISKCKQRDDLKTAFAEAF--KYDRKIIIEESIVGREIEIGVIGNDEPICSV 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VPK +FY YE KY    +  ++PA +  + Y+ ++ +A  A +A+   G++R DF 
Sbjct: 243 AGEIVPKKEFYDYEAKYEDGQTELIIPANVTEEQYETIKSMAIAAFKALDLSGLARVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V+  E+N  PG TP S+FP +  ++G  + EL+  ++  A
Sbjct: 303 L-AEDGTVYINEVNTMPGFTPYSMFPLLWQHSGVPYSELIERLIALA 348


>gi|50086472|ref|YP_047982.1| D-alanine--D-alanine ligase [Acinetobacter sp. ADP1]
 gi|81392119|sp|Q6F705|DDL_ACIAD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49532448|emb|CAG70160.1| D-alanine-D-alanine ligase B [Acinetobacter sp. ADP1]
          Length = 309

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 158/296 (53%), Gaps = 8/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER+VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLFGGKSAERDVSLDSGQAVLDALLRSGVQAEAFDPKERSVTEL--VGYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L+IPYT +G+  SA+ MDK+++KQ+     +P  P  +V++ +  +
Sbjct: 68  RGGEDGQIQGVLEWLDIPYTGTGVQGSAIGMDKIKTKQIWQGSDLPTAPYRIVSKDSDLN 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           + +  +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 EIVASLGLPVIIKPVHEGSSIGMSKVEKIEDFAPAIEKAT--AHDAIVMAEKWITGREYT 185

Query: 179 CGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             V+   +L V  +  P+   FY Y+ KY   +  + +P+ +     K++Q L   A   
Sbjct: 186 IVVLNGKALPVIRLQPPQDVAFYDYDAKYQRNDVQYGIPSGLSDSDEKKLQELTLRAFHT 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G  G  R D + D      + LEIN  PGMT  S+ P+ A   G  F  L + ++
Sbjct: 246 VGASGWGRVDAMQDEHGN-FWLLEINTVPGMTSHSLVPKAAQAIGIDFDALCVEIL 300


>gi|253575141|ref|ZP_04852480.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251845597|gb|EES73606.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 311

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 96/306 (31%), Positives = 152/306 (49%), Gaps = 10/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+   ++V  I++ +   L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEIVGKLDPNKYEVVPIELTKREELIDRVRGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+++ + G+       + R     
Sbjct: 63  AFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRLLQTEGIATPDGAYLERAMFAD 122

Query: 117 --TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    ++ P  +KP  GGSS+G+  + + + +   L ++  W  G+ +L+E  V G
Sbjct: 123 GTWEPKMAGLAYPLFVKPNAGGSSIGVQRVDRPELLRGALEEAFRW--GESVLVESMVSG 180

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TC ++    L V  I       +       S       P  +P D    V+  A   
Sbjct: 181 QEITCPILDGELLPVLGIRAANGAEWFDYEAKYSDGGAEEKPITLPPDEETRVRAAALAC 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  ++E
Sbjct: 241 YRLLQCRVYARVDMIL--KDGVPYVLEVNTLPGMTANSLLPRSAAAAGISYSELLDRIIE 298

Query: 295 DASCLR 300
            +   R
Sbjct: 299 LSLAER 304


>gi|257065509|ref|YP_003145181.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
 gi|256793162|gb|ACV23832.1| D-alanine--D-alanine ligase [Slackia heliotrinireducens DSM 20476]
          Length = 317

 Score =  181 bits (460), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 178/307 (57%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL+SGKACA ALE +GF+V+ +D  +++    L     D+AF  LH
Sbjct: 12  VAVLCGGKSGEREVSLNSGKACAEALEASGFEVTLLDTAEKADLKRLIDEPFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE + IPYT SGI AS+++++K ++K   +  G+ V  S+ ++   + 
Sbjct: 72  GRGGEDGTIQGFLETVGIPYTGSGINASSVAINKSKAKDAYAQAGLRVAASMTISEDDIL 131

Query: 120 SQHLISP-------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++LIS        P V+KP   GSSLG+ +++    I   +  + +     + ++EQ++
Sbjct: 132 DENLISDIVETCGIPCVVKPTTEGSSLGMTIVRDAADIAEAIKTALAV--DVEAMVEQFI 189

Query: 173 DGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ELT GV+G+       V +I   + +FY+Y  KY++  S H+ PA +  D+ +  Q 
Sbjct: 190 SGTELTVGVIGNDDAEALPVIQIVPTEDEFYNYHAKYAAGGSRHLCPAPVSRDVTENAQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH  +GCRG+SR+D + D      + LE N  PGMT  S+ P+ A  AG  F++L 
Sbjct: 250 MAVAAHMVLGCRGVSRTDIIVDA-DDTCWVLETNTIPGMTGTSLVPDAAKVAGMDFQQLC 308

Query: 290 LWMVEDA 296
             ++  A
Sbjct: 309 EKLIALA 315


>gi|327392726|dbj|BAK10148.1| D-alanine--D-alanine ligase B DdlB [Pantoea ananatis AJ13355]
          Length = 305

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 111/305 (36%), Positives = 164/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R  M S
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  + +   +P  L    ++ H D +L+E +
Sbjct: 124 GLDATTEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLPAAL--EEAFRHDDNVLVEAF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L         S+FY YE KY S ++ +  PA +  +   E+Q+L 
Sbjct: 182 LSGEEYTVGILGDQILPAI-KIKTASEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299

Query: 292 MVEDA 296
           ++E A
Sbjct: 300 ILELA 304


>gi|298369633|ref|ZP_06980950.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282190|gb|EFI23678.1| D-alanine--D-alanine ligase B [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 303

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 107/298 (35%), Positives = 160/298 (53%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSERNVSLDSGAAIVAALKGRGVDAHAFDPKETPLADLKTQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG+VQ  LEL  IPYT SG+ ASA+ MDK R K +  + G+PV    ++   T   
Sbjct: 67  TYGEDGVVQGTLELFGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLREDTDFE 126

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K+   +     +        +++ E+++ G E +
Sbjct: 127 AVEKRLGLPMFVKPANEGSSVGVVKVKEKGRLKDVYAELKHMK--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V+G   L    + VP ++FY YE KY+  ++ +  P+ +     + ++ LA    +AI
Sbjct: 185 CPVLGGRGLPSI-LIVPATEFYDYEAKYNRDDTVYRCPSDLNAADEELMRELAVRGAEAI 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R DFL D L  K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 GAEGCVRVDFLKD-LDGKLYLLEINTLPGMTSHSLVPKSAAQIGMDFPDLCIEILKTA 300


>gi|15805391|ref|NP_294085.1| D-alanyl-alanine synthetase A [Deinococcus radiodurans R1]
 gi|22095571|sp|Q9RXF1|DDL_DEIRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6458038|gb|AAF09941.1|AE001896_6 D-alanine--D-alanine ligase [Deinococcus radiodurans R1]
          Length = 339

 Score =  181 bits (460), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 149/333 (44%), Gaps = 35/333 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E EVSL S ++  +AL    F V+ + + +    +                 
Sbjct: 7   LLAGGQSGEHEVSLRSARSVLAALPRDQFDVTPVVISKQGRWLPPTETQKALETGVSSQG 66

Query: 46  --------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                    A    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ +K
Sbjct: 67  GDLMLHRAAAAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           QV+ S G+P     L  R                +  P  +KP   GSS+GI  +   + 
Sbjct: 127 QVLDSAGIPQVAWRLAVRREWQQTPDAVRARAAELGYPLFVKPANLGSSVGISKVGSPEE 186

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207
           +   L  +   +    L         E+  G+                 +DFY YE KY+
Sbjct: 187 LDAALTLAFGLDRRVILEAMTPHKPREVEVGILGNDVPVASPVGELSFDADFYDYETKYT 246

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +   +PA+IP ++ + ++  A  A +A+ C G++R DF +   + ++F  E+N  PG
Sbjct: 247 EGRAEMHIPARIPPEVSERIRTEALRAFRALDCAGLARVDFFYVEETGELFLNEVNTMPG 306

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            T  S++P++   AG S+ EL+  +VE A   R
Sbjct: 307 FTTTSMYPKLFEAAGLSYSELVTRLVELALEER 339


>gi|42522180|ref|NP_967560.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
 gi|81618354|sp|Q6MQ94|DDL_BDEBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39574711|emb|CAE78553.1| D-alanine-D-alanine ligase [Bdellovibrio bacteriovorus HD100]
          Length = 365

 Score =  181 bits (459), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 95/345 (27%), Positives = 163/345 (47%), Gaps = 53/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A++ GG S+E EVSL S K  A AL+   F    I + +                    
Sbjct: 7   VALIFGGKSAEHEVSLRSAKNVADALDKDKFTPVLIGISKEGSWYRFPDMGVFTEATKIV 66

Query: 45  --------------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                               VL  LK       D+AF +LHG  GEDG +Q + +++++P
Sbjct: 67  DSALPSKAEPVALMSLQGKPVLYSLKDHSKTAVDVAFPILHGTMGEDGTIQGLFKMVQLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLK 134
           +   G+ +SA  MDK   K++++   +P    +           +    +  P+ IKP  
Sbjct: 127 FVGCGVWSSAAGMDKEIMKRLLAVAKIPNARYLLLTPHQKNDYNEIVKELGSPFFIKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--- 191
            GSS+G+  IK  +   + L  +       ++L E+++ G E+ C VMG           
Sbjct: 187 AGSSVGVHKIKTAEDFVVKLKDAF--QFDTKVLAEEFIQGREVECSVMGHNHAPKASLPG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +P+ +FYSYE KY   N     +PA++  +  K VQ++A   +QA+GC G++R DF  
Sbjct: 245 EVIPQHEFYSYEAKYIDDNGALLKIPAELSPETTKAVQKMAEQTYQAMGCDGLTRVDFFI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            P + +++  EIN  PG T +S++P+M   +G S+++L+  +++ 
Sbjct: 305 RP-NGELYINEINTIPGFTKISMYPKMWEASGLSYKDLISQLIQL 348


>gi|188575299|ref|YP_001912228.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
 gi|188519751|gb|ACD57696.1| D-alanine--D-alanine ligase [Xanthomonas oryzae pv. oryzae PXO99A]
          Length = 318

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 162/302 (53%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+       +     
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 119 DSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        +  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AADIHAAAQQLGLPVIVKPANEGSSVGVSRVFDQAQLEDAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGL-EGEPEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|254518063|ref|ZP_05130119.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
 gi|226911812|gb|EEH97013.1| D-Ala-D-Ala ligase B [Clostridium sp. 7_2_43FAA]
          Length = 299

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 158/299 (52%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGGISSEREVSL+SG +    +    ++V  + +D+   ++      D A   LHG
Sbjct: 3   VGVLMGGISSEREVSLNSGNSMMQHINKEKYEVIPVIIDKKEDVIEKVRDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQA+LE L IPY+    L+S+L MDK  +K ++ + G+     +    +    
Sbjct: 63  KFGEDGTVQAVLETLGIPYSGCNTLSSSLCMDKDLTKTILKANGIRTARWLNVRSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ G E+
Sbjct: 123 YAAIEEIGYPVFIKPTNGGSSVATFKITKKEDVENAVREGLKW--DNEVMIEEFIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V  +  +        K+DFY YE KYS+  + H     +  DI+ EV+++A   ++A
Sbjct: 181 TCPV-FENEMFPVLAIKAKTDFYDYEQKYSANGAEHYA-INLEKDIHSEVEKMALDTYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ E +  ++E +
Sbjct: 239 LKCSVYARIDMIITEE-GVPYVLEVNTLPGMTATSLFPQSAGEKGISYSEFIDMIIEHS 296


>gi|169342530|ref|ZP_02863584.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169299302|gb|EDS81369.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++ +   +L  +K  D A   LH
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +   
Sbjct: 62  GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    I  P  +KP  GGSS+    + K + I   +       + ++++IE +V G E
Sbjct: 122 DYEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAV--MEGLKYDEEVIIESFVKGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    +
Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296


>gi|291616274|ref|YP_003519016.1| DdlB [Pantoea ananatis LMG 20103]
 gi|291151304|gb|ADD75888.1| DdlB [Pantoea ananatis LMG 20103]
          Length = 305

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 110/305 (36%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ER+VSL SG A  + L +AG     ID      L L     +  F  LHG
Sbjct: 4   VAVLMGGTSAERDVSLMSGGAVLAGLREAGIDAQGIDTRDVSVLELTAQGFEKVFIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +QA+LE L++PYT SG++ASA++MDK+R+K +    G+P    + + R  M S
Sbjct: 64  RGGEDGTLQAVLEFLQLPYTGSGVMASAVTMDKLRTKLLWQGRGLPAGKFVWITREQMQS 123

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS+GI  + +   +   L    ++ H D +L+E +
Sbjct: 124 GLDAATEAAISALGLPLFVKPSSEGSSVGISRVNQLSDLSAAL--EEAFRHDDNVLVEAF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T G++GD  L         S+FY YE KY S ++ +  PA +  +   E+Q+L 
Sbjct: 182 LSGEEYTVGILGDQILPAI-KIKTASEFYDYEAKYISDDTQYFCPAGLSAEREAELQQLV 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + A +A+GC G  R D + D        LE N  PGMT  S+ P  A  AG +F +L++ 
Sbjct: 241 WSAWRALGCSGWGRVDVMTDDQ-GHFQLLEANTSPGMTSHSLVPMAAKQAGLTFSQLVVR 299

Query: 292 MVEDA 296
           ++E A
Sbjct: 300 ILELA 304


>gi|89095257|ref|ZP_01168178.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
 gi|89080464|gb|EAR59715.1| D-alanylalanine synthetase [Oceanospirillum sp. MED92]
          Length = 315

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 151/303 (49%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAF 55
           +AV+ GG SSER VSL SG A   AL  AG     ID+          + L     D AF
Sbjct: 16  VAVIYGGNSSERSVSLKSGAAVLGALSRAGVDAFGIDLYGEDGTEQPLVQLQRENFDRAF 75

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113
            +LHG  GEDG +Q  L++L  PYT SG+ ASA+ MDK+R+K +     +P  P   I  
Sbjct: 76  LILHGPVGEDGTLQGALDMLGKPYTGSGVAASAIGMDKLRTKLIWLGHNIPTPPFAVIEQ 135

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +   +    +  P ++KP   GSS+G+  +   + +   L  ++   +   ++ E ++ 
Sbjct: 136 GQDLAEVAERLKWPMIVKPAHEGSSIGMSKVSSQKELEAALGTAA--EYDRTVIAESWMS 193

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  ++   +L   ++    +  Y ++ KY + ++ +     +  +   E++RLA  
Sbjct: 194 GGEYTVAILDGQALPPIQLITDHAF-YDFDAKYVANDTQYRFDLDLTSEQTDELKRLAEK 252

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+GCRG  R D + D        LE+N  PGMT  S+ P  A  AG SF EL++ ++
Sbjct: 253 AFSAVGCRGWGRVDAMRDECGN-FQLLEVNTAPGMTDHSLVPMAAKEAGISFEELVVEIL 311

Query: 294 EDA 296
             A
Sbjct: 312 RTA 314


>gi|182625622|ref|ZP_02953392.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177909174|gb|EDT71645.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 302

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 159/300 (53%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++MGGISSEREVSL SG++  + ++   ++VS+I ++ +   +L  +K  D A   LH
Sbjct: 3   VGIIMGGISSEREVSLVSGESIFNHIDKEKYEVSKIIIN-NKRDILEKVKGLDFALLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RF 116
           G FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I VN     
Sbjct: 62  GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVNSIEEI 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  +KP  GGSS+    + K + I   +       + ++++IE +V G E
Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEEIKDAV--MEGLKYDEEVIIESFVKGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    +
Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|167630619|ref|YP_001681118.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
 gi|190359140|sp|B0TAZ6|DDL_HELMI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167593359|gb|ABZ85107.1| d-alanine--d-alanine ligase, putative [Heliobacterium modesticaldum
           Ice1]
          Length = 366

 Score =  181 bits (459), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 97/342 (28%), Positives = 147/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E EVSL+S ++   AL+   F V  I +DR     L              
Sbjct: 6   IAVICGGRSGEHEVSLTSAQSIVDALDRFRFNVLTIGIDRHGAWWLGSNVIDNLRKGQQP 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG  GEDG +Q + E   +PY   
Sbjct: 66  YGQRVYFIPDPTCPGLIEENPVTRKPVPVDVFFPVLHGPNGEDGTIQGLFEAANVPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPL 133
           G+LASA  MDK   K + +   +P  P ++V R   +S            +  P  +KP 
Sbjct: 126 GVLASACGMDKAIMKALFAQSDLPQLPYLVVLRNRWESAREQVIDEVEDRLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+GI        +      +  ++    +     V  IE++     +    V    
Sbjct: 186 NMGSSVGISKATNRAELVAAFDDAVRYDRKLIVEKGINVREIEVSVLGNDEVVASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           VP  +FY Y+ KY++ +S  ++PA I        Q +A  A +AI   G+SR DFL D  
Sbjct: 246 VPAHEFYDYDAKYAAADSRLLIPAPIAAADVATFQEMAIRAFRAIDGSGLSRVDFLLDKN 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           S +V+  EIN  PG T +S++P++    G  + ELL  +V+ 
Sbjct: 306 SGEVYINEINTLPGFTSISMYPKLWEATGIPYGELLSRLVDL 347


>gi|219668748|ref|YP_002459183.1| D-alanyl-alanine synthetase A [Desulfitobacterium hafniense DCB-2]
 gi|219539008|gb|ACL20747.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 361

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 52/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S E EVSL+S  +   A++   +++  I + ++                   
Sbjct: 6   IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65

Query: 45  ----VLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
               +LAH                   K  L F VLHG FGEDG +Q + E+  IPY  S
Sbjct: 66  GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPL 133
           G+L SAL MDK R K V +  G+P  P I          + +   + +H +  P  +KP 
Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +   L    +  +  +L++EQ + G E+        DA   +  
Sbjct: 186 NLGSSVGISKARNREELIQAL--QLAAEYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF   
Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +++  EIN  PG T +S++P++   +G  + EL+  ++E 
Sbjct: 304 E-GGQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346


>gi|295677462|ref|YP_003605986.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
 gi|295437305|gb|ADG16475.1| D-alanine/D-alanine ligase [Burkholderia sp. CCGE1002]
          Length = 318

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVS++SG+     L+D G      D        L       AFNVLHG
Sbjct: 12  VAVLSGGVSAEREVSINSGRLVLQGLQDGGVDAHLFDPSARPLSALKDEGFARAFNVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R     
Sbjct: 72  GYGENGQIQGALDFYGIHYTGSGVLGSALGLDKFRAKLVWQQLGIPTPPFEAVMRGDDYD 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +I +K    +   +  + +      +L+E+ ++G
Sbjct: 132 ARARAIVAQLGLPLFVKPASEGSSVAVIKVKTAAKLSAAI--AHAAKFDTIVLVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +         + VP  +FY Y+ KY S  + +++P  +       +Q LA  A
Sbjct: 190 GGEYTACIAGDLDLPVILIVPAGEFYDYDAKYISDTTQYLIPCGLTSSEEIRLQALARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + +GCR   R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FEVLGCRDWGRADFMLDGEGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYEELIMTVL 307


>gi|330815445|ref|YP_004359150.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
 gi|327367838|gb|AEA59194.1| D-alanine--D-alanine ligase [Burkholderia gladioli BSR3]
          Length = 313

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+S+EREVSL SG      L +AG      D        L       AFN LHG
Sbjct: 12  VAVLLGGVSAEREVSLKSGTLVVQGLREAGIDAHPFDPSERPLAALKDEGYVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT +G+L SAL +DK R+K V    G+P  P  +V      +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGTGVLGSALGLDKFRTKLVWQQTGIPTPPFEVVLCGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+   VIK   +  L      +  H   +L+E+ ++G
Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVA--VIKVKDAAALPAALDEAARHDKIVLVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  I      EV+RLA  A
Sbjct: 190 GGEYTACIAGDLDLPVIRIVPAGEFYDYHAKYIADDTQYLIPCGIEAGREAEVKRLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|319789827|ref|YP_004151460.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
 gi|317114329|gb|ADU96819.1| D-alanine/D-alanine ligase [Thermovibrio ammonificans HB-1]
          Length = 292

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/293 (34%), Positives = 165/293 (56%), Gaps = 5/293 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A++ GG S E E+S  S ++   AL+  G +V ++++ + + L LA   PD+AF  LHG
Sbjct: 3   VALIYGGPSPEAEISRKSAESVERALKKLGHRVLKLELTKELPLKLAAESPDVAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG VQ +LE++ IPYT  G+  SA+++DK  +K+++ S G+ V   I V R     
Sbjct: 63  SPGEDGTVQGLLEIMGIPYTGCGVTTSAVAIDKDLTKRLLKSHGIRVPAGITVFRGQEIP 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P ++KP + GSS+G+ ++K  +     + ++ +     + LIE++++G E+T G
Sbjct: 123 EPA-ELPCIVKPARVGSSVGLSLVKSQEEFERAVNEALTV--DAKALIEEFIEGREITVG 179

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L   EI  P    Y YE KYS   + +V+PA++     + + RLA  A++ + C
Sbjct: 180 VLNGRPLPPVEILTPGE-LYDYEAKYSDSRTEYVVPAELGRKTQERLCRLAEKAYKVLEC 238

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           RG  R DF  D        LEIN  PG+T  S+ P+ A  AG  F EL+  M+
Sbjct: 239 RGAVRVDFRLDKY-NSPVLLEINTIPGLTERSLLPKAAKAAGMEFEELIAEML 290


>gi|300856376|ref|YP_003781360.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
 gi|300436491|gb|ADK16258.1| D-alanine-D-alanine ligase A [Clostridium ljungdahlii DSM 13528]
          Length = 296

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 165/297 (55%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSEREVSL+SGK   + L+   ++V  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISSEREVSLNSGKEIVNCLDKNKYEVVPIVIDKKRDVLEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG +Q++LE ++IPY+  G L SA+ MDK  SK+V+ S  +     I    +    
Sbjct: 63  KFGEDGTIQSVLETMDIPYSGCGPLTSAICMDKDMSKKVLKSADINTAKWICVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    I  P V+KP  GGSS+   ++KK + I  ++    + ++  +++IE+Y+ G E+
Sbjct: 123 YDKLDEIGYPVVVKPNCGGSSVATNIVKKKEDIENNV--KLALDYDTEVVIEKYIQGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +L V     P ++F+ Y  KY+   S  ++  ++   + ++V+++     + 
Sbjct: 181 TCCMLKGKTLPVI-AIKPNAEFFDYTAKYADGGSDEIV-VELEKSLQEKVEKICVQCWEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C+  +R D +    +   + LE+N  PG+T  S+FP+ A     SF +LL  +++
Sbjct: 239 LKCKSYARVDIIV--ENGIPYVLELNTLPGLTKNSLFPKSARGIDMSFTQLLDKVIQ 293


>gi|290969173|ref|ZP_06560698.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290780679|gb|EFD93282.1| D-ala D-ala ligase N-terminal domain protein [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 313

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 162/307 (52%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AV++GG S+E  +S  +G A A+AL++ G+K   +++  + +   L   K D+ FN LH
Sbjct: 10  IAVMVGGPSTEAAISRKTGAAVAAALQEKGYKPEIMELVPTMLARTLQEKKIDVVFNALH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q   E+  IPYT  G++ASA+ M+K+ SK   +  G+P  P          
Sbjct: 70  GRYGEDGVLQGFCEMAGIPYTGPGVMASAVGMNKVMSKCAFAGAGIPTAPFAYYFAAQSP 129

Query: 120 ------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +   S P VIK    GSS+G +++++  ++P  + ++   ++ + ++ EQ++D
Sbjct: 130 AAIVAAIEREFSLPVVIKSAGQGSSIGTVIVREADALPEAVKEAF--SYSNSIIAEQFID 187

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM D +  V    V  +  Y Y  KY+   + H+ PA +     +++Q LA  
Sbjct: 188 GDEFTVAVMDDMAFPVI-QIVSDTGKYDYYSKYTPGVAKHLCPAPLTETATRQMQDLALQ 246

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                   G++R D + D    + F LEIN  PGMT  S+ P+ A   G SF +L   ++
Sbjct: 247 VFHLCHASGVARVDMMTDAA-GRPFVLEINTVPGMTETSLVPDAARAMGMSFADLCEKIL 305

Query: 294 EDASCLR 300
           ++A   +
Sbjct: 306 QEACTGK 312


>gi|21230201|ref|NP_636118.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66769809|ref|YP_244571.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|188993024|ref|YP_001905034.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. campestris
           str. B100]
 gi|39931166|sp|Q8PCJ8|DDLB_XANCP RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|21111739|gb|AAM40042.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66575141|gb|AAY50551.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv. campestris
           str. 8004]
 gi|167734784|emb|CAP52994.1| D-alanine-D-alanine ligase B [Xanthomonas campestris pv.
           campestris]
          Length = 318

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 102/302 (33%), Positives = 154/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAQRFDRVFNVLHG 78

Query: 61  NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +   GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +    +   I  P ++KP   GSS+G+  +     +   +  + +  +   LL+EQ ++
Sbjct: 139 AQQIHAAAEQIGLPVIVKPANEGSSVGVSRVFDQAQLDEAV--TLAARYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P        +  Q     
Sbjct: 197 GDELTVAVLGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGDAEAQIGQLALDA 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +A GC G  R D + D  + +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 256 F-RAAGCSGWGRVDVMRDGSTGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEALVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|88811835|ref|ZP_01127088.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
 gi|88790719|gb|EAR21833.1| D-alanylalanine synthetase [Nitrococcus mobilis Nb-231]
          Length = 315

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 146/295 (49%), Gaps = 8/295 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL SG     AL   G +   ID D      L     D AF  LHG
Sbjct: 17  VAVLAGGWSAEREISLQSGAVVLEALRRRGVEAHHIDPDERPLGALGE--FDRAFIALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--M 118
             GEDG++Q  LE++ +PYT +G+L SAL MDK+R+K V  + G+P    + ++      
Sbjct: 75  RGGEDGVIQGALEVMGLPYTGTGVLGSALGMDKLRTKLVWRALGLPTPAFLRLDSEAALD 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P ++KP + GSSLG+  +    ++        +  +  ++  E+++DG E T
Sbjct: 135 RVEAELGYPVMVKPNREGSSLGMTRVNGSAALLEA--WRKACRYDREVFAERWIDGQEYT 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++G+ +L V         FY ++ KY +  +    P  +       +  LA  A +A+
Sbjct: 193 VSLLGEQALPVI-RIESAGVFYDFDAKYRAAETRLHCPCGLVALAEAALAELAAAAFEAV 251

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G  R D L D      + LE+N  PGMT  S+ P  A  AG    EL+  ++
Sbjct: 252 GGSGWGRVDLLRDAE-GVAWLLEVNTVPGMTDHSLVPMAARAAGLDMDELVWRIL 305


>gi|261493994|ref|ZP_05990500.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
 gi|261496952|ref|ZP_05993319.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261307388|gb|EEY08724.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. OVINE]
 gi|261310340|gb|EEY11537.1| D-alanine--D-alanine ligase [Mannheimia haemolytica serotype A2
           str. BOVINE]
          Length = 303

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQVVD 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +K    GSS+G+  +K  + +   +    +      +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAI--HEALKFDSIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++  P  +FY Y  KY S N+ +V+PA    +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVPALND-ERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGE-GKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|254362460|ref|ZP_04978568.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
 gi|153094052|gb|EDN74964.1| D-alanine--D-alanine ligase [Mannheimia haemolytica PHL213]
          Length = 303

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A  +AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTAALKSLGYNVEGIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLLWNAVGLPTADMVVVQRGQAVD 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P  +K    GSS+G+  +K  + +   +    +      +L+E+++ G E
Sbjct: 128 FDQIIAKLGLPVFVKSSCEGSSVGVFKVKTKEELAPAI--HEALKFDSIVLVEEFLAGNE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++  P  +FY Y  KY S N+ +V+PA    +   EV +L   A+ 
Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVPALND-ERQAEVAKLVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D    K   +E+N  PGMT  SIFP+ AA  G SF +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGE-GKFRLVEVNTNPGMTSHSIFPKSAATVGISFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|92114310|ref|YP_574238.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
 gi|122419690|sp|Q1QVG9|DDL_CHRSD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91797400|gb|ABE59539.1| D-alanine--D-alanine ligase [Chromohalobacter salexigens DSM 3043]
          Length = 314

 Score =  181 bits (458), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 103/293 (35%), Positives = 158/293 (53%), Gaps = 6/293 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
            GG S+EREVSL SG A  ++L  +G      D        L  L PD  F  +HG  GE
Sbjct: 22  YGGRSAEREVSLLSGGAVLASLVRSGVDAHGFDFAGGGLSGLEALAPDRVFIAMHGRDGE 81

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL- 123
           DG +Q  LELL IPYT SG+LASAL MDK R+KQ+  + G+P   S+++         + 
Sbjct: 82  DGSLQGALELLGIPYTGSGVLASALGMDKERTKQLWRAHGLPTPESVMLEGEPDWDAVIE 141

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++KP+  GS++GI +++   ++      + +      ++ E++V G E T  ++
Sbjct: 142 ALGLPLIVKPVHEGSTIGISIVETRDALIAA--HAEASRFDSAIMAERFVQGEEYTVSLL 199

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           GD  L    + VP S FY YE KY S  + ++LP  +  +  + +  +   A +AIG RG
Sbjct: 200 GDEVLPAIRVEVP-SGFYDYEAKYHSDTTRYLLPCGLEQEEERMLGDVCRRAFEAIGGRG 258

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             R D + D    + + LE+N  PGMT  S+ P+ AA+AG  F  L+L +++ 
Sbjct: 259 WGRVDVMRDAQ-GRFWLLEVNTVPGMTDHSLVPQAAAHAGLDFDALVLRILDT 310


>gi|312795063|ref|YP_004027985.1| D-alanine--D-alanine ligase [Burkholderia rhizoxinica HKI 454]
 gi|312166838|emb|CBW73841.1| D-alanine--D-alanine ligase (EC 6.3.2.4) [Burkholderia rhizoxinica
           HKI 454]
          Length = 315

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 141/299 (47%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSER+VSL SG+     L DAG      D        L       AF  LHG
Sbjct: 14  VAVLYGGESSERDVSLVSGRLACQGLRDAGVDAYLFDPKERPLSALKDEGFARAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114
            +GE+G +Q  L+   I YT  G+L SAL MDK R+K +    G+P  P          +
Sbjct: 74  GYGENGQIQGALDFYGIRYTGPGVLGSALGMDKFRTKLIWQQLGIPTPPFDTVLRGEDYD 133

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K   ++P  L  + +  H   +L+E+ +DG
Sbjct: 134 MRAQQIVAKLGLPLFVKPATEGSSVAVFKVKAADNLPHAL--AQAARHDPVVLVEKSIDG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +  +        VP  +FY Y  KY + ++ +++P  +     + +  LA  A
Sbjct: 192 GGEYTACIAGSLPLPLIRIVPAGEFYDYHAKYVADDTQYLIPCGLSDADEQRLTALARRA 251

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + + C    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ ELL+ ++
Sbjct: 252 FEVLACTAWGRADFMLD-SDGNPYFLEVNTSPGMTDHSLPPKAARAVGISYSELLVNVL 309


>gi|21241551|ref|NP_641133.1| D-alanine--D-alanine ligase [Xanthomonas axonopodis pv. citri str.
           306]
 gi|39930906|sp|Q8PPA6|DDL_XANAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21106902|gb|AAM35669.1| D-alanine-D-alanine ligase B [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 318

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGGNVLDALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           + G  EDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  ++   +   LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAVTLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P     +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIADDTQYLCPGL-EGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|86160192|ref|YP_466977.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|123496862|sp|Q2IG33|DDL_ANADE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85776703|gb|ABC83540.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 308

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 110/301 (36%), Positives = 161/301 (53%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG SSEREVSL +G ACA AL   G  V  +DVD  V   L   + ++AF  LHG
Sbjct: 9   VAVLYGGRSSEREVSLRTGAACAEALRQKGHDVVLVDVDLEVAARLRAERVEVAFVALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
            +GEDG +Q +LE + IPYT SG+LASA+ MDK  SK +  S G+ V    +  R     
Sbjct: 69  RWGEDGSIQGLLESMAIPYTGSGVLASAMGMDKTVSKAIFRSLGLAVADYRVFPRAAAGA 128

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP   GSS+G+ ++     +        +  +   +++E+YV G E
Sbjct: 129 IGVDDLPFGLPCVVKPAGEGSSVGVHLVNAAAELGPA--CRDAAGYAGDVIVERYVKGTE 186

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V+   +L      VP + FY Y  KY++  + +  PA+IP    + V   A  AH+
Sbjct: 187 VDVAVLEGKALGAI-EIVPANAFYDYAAKYTAGTTKYFYPARIPEAHVRAVMEAAEAAHR 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            IGC G++R DF+        + LE+N  PGMT  S+ P++AA  G SF +L   +++ A
Sbjct: 246 GIGCSGVTRVDFIV-AADGTPYILEVNTLPGMTATSLVPKIAAGLGLSFPDLCDRILDGA 304

Query: 297 S 297
           +
Sbjct: 305 A 305


>gi|291558773|emb|CBL37573.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SSC/2]
          Length = 353

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 5   VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 65  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 125 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD +   +    
Sbjct: 185 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 242

Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                  + FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 243 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               S +V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 303 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 351


>gi|298252073|ref|ZP_06975876.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297546665|gb|EFH80533.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 372

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 86/352 (24%), Positives = 149/352 (42%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S E EVSL+S  +    L+   + +  I + +    +               
Sbjct: 7   IGVIYGGRSCEHEVSLASAVSVVRYLDTEKYDIIPIVIMKDGAWLWNVEPGQLLQASSDP 66

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                            A  + DL F VLHG +GEDG +Q + E
Sbjct: 67  ELAAALASAPVVSLATDTQSRQFFALQNKQPLPADGRLDLLFPVLHGPYGEDGTIQGLFE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLI 124
           +  IPY   G+L SA+ MDK   K +  + G+PV  S++   F             +  +
Sbjct: 127 MANIPYVGCGVLGSAVGMDKEIMKVLFQAAGLPVVDSLVYRHFQWKRDPEGLLNEVEQRL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
           S P  +KP   GSS+G+   +  Q +   + ++ +++    +                  
Sbjct: 187 SYPCFVKPANLGSSVGVSNARNRQEMARAISEAFTYDRKVIIEQGLECREFSCAILGNEY 246

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +      +P  +F  YE KY +     V+P+ +P +  +E++ +A  A+QA+   G+S
Sbjct: 247 PLVSQVGEILPGDEFSDYEDKYVNHTIQFVIPSTLPAETARELREMALRAYQALDLSGLS 306

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R DF  D    + +  E+N  PG T +S++P++ A +G S+ ELL  ++E A
Sbjct: 307 RVDFFQDKTGGQFYINEVNTLPGFTDMSLYPKLWAASGLSYPELLDRLIELA 358


>gi|284052191|ref|ZP_06382401.1| D-alanyl-alanine synthetase A [Arthrospira platensis str. Paraca]
 gi|291566125|dbj|BAI88397.1| D-alanine--D-alanine ligase [Arthrospira platensis NIES-39]
          Length = 358

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/344 (30%), Positives = 162/344 (47%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VGLLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPNPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  + S   I              P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI  ++  Q +   L   ++  +  ++++E  V+  EL C V         V   
Sbjct: 186 LGSSVGISKVRSRQELETAL--DAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +  
Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V   EIN  PG T +S++P++ +  G SF EL+  ++E A
Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGVSFPELVNQLIELA 347


>gi|192362236|ref|YP_001983383.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
 gi|190688401|gb|ACE86079.1| D-alanine--D-alanine ligase [Cellvibrio japonicus Ueda107]
          Length = 328

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 153/304 (50%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S+ERE+SL SG A  +ALEDAG     IDV  +V   +     D AF +LHG
Sbjct: 19  VGVLYGGLSAEREISLQSGAAVIAALEDAGIDHVAIDVGDNVIADIQAANIDRAFLMLHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +QA+LE L IPYT S + +SAL+MDK+R+K +           +         
Sbjct: 79  PGGEDGRIQALLEFLHIPYTGSDVQSSALAMDKLRTKFLWCGYSQSSAQHLPTPEFAVLT 138

Query: 116 ---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     +    ++KP   GSS+G+  +K  + +        + ++   +L E+ +
Sbjct: 139 RESDFVAELKRLGGEVMVKPANEGSSIGMSRVKTAEDLQAAF--VKATDYQGSVLAERLI 196

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G E T  ++   +L    +    S  Y +  KY + ++ ++ P  +  +  +E+++LA 
Sbjct: 197 VGAEYTVAILDGEALPPIRLETDHSF-YDFNAKYIAEDTRYICPCGLSAEKEQELKQLAL 255

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A   +GCRG  R D + D      + LE+N  PGMT  S+ P  A   G SF EL++ +
Sbjct: 256 TAFNVLGCRGWGRVDVMADAQQN-FYLLEVNTAPGMTSHSLVPMAAKAVGLSFTELVVTI 314

Query: 293 VEDA 296
           +  +
Sbjct: 315 LRAS 318


>gi|116751515|ref|YP_848202.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
 gi|189083063|sp|A0LQR5|DDL_SYNFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116700579|gb|ABK19767.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 311

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 107/305 (35%), Positives = 159/305 (52%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLH 59
           +A+L GG S+EREVSL SG+   +AL+   + V + D    +  + A   K D+A  +LH
Sbjct: 8   VALLSGGASAEREVSLKSGEQVFNALDKQRYLVLRYDPAHDLTRLAADAEKIDVALIILH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNR 115
           G  GEDG +Q +LE L IPY  SG+L SA++M+K+ SKQ+    G+PV P          
Sbjct: 68  GRMGEDGTIQGLLESLGIPYQGSGVLGSAVAMNKILSKQLYIHAGLPVAPHLVADRREPP 127

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP   GSS+G+ +++    +   +       +  + LIE+YV GI
Sbjct: 128 DLDTVADRLGLPVVVKPEHEGSSIGLSIVRNRDQLAAAVETGW--QYDRRCLIEKYVHGI 185

Query: 176 ELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T                 +P    +F+ Y+ KY+   S  + PA++   I  + Q  A
Sbjct: 186 EITGGVLGNDHLQALPLIEIIPGEAYEFFDYKAKYTPGASREICPARLSDTITAKAQEYA 245

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQA+ C+G SR+D +       +F LE N  PGMT  S+FP+ AA AG SF  LL  
Sbjct: 246 RKAHQALCCKGYSRTDMIV--SGNDIFILETNTIPGMTATSLFPQAAAVAGISFSALLDR 303

Query: 292 MVEDA 296
           ++E A
Sbjct: 304 LIELA 308


>gi|110598234|ref|ZP_01386510.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
 gi|110340149|gb|EAT58648.1| D-alanine--D-alanine ligase [Chlorobium ferrooxidans DSM 13031]
          Length = 369

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 104/351 (29%), Positives = 163/351 (46%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG S+E E+S+ S K+ A+ +    ++V  I +      +L              
Sbjct: 6   VAIIFGGRSAEHEISIISAKSIAANINTDRYRVIPIYITHDGEWLLDGIARDILNFDLAT 65

Query: 48  -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+AF VLHG++GEDG +Q  L+   
Sbjct: 66  LLRSSSLDAAGKTLRRMTKESGQHPFDRNFTATGIDVAFLVLHGSYGEDGRIQGFLDTCA 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPP 127
           IPYT  G+LASA++MDK  +K  V+  G+ V P I           + F          P
Sbjct: 126 IPYTGCGVLASAVTMDKALTKLCVADAGIAVAPGITLLSSDYLADPDSFHTRIDREFEYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185
             IKP   GSS+GI  +     +PL L  + +     ++L+E+ + G E+   V      
Sbjct: 186 LFIKPANLGSSVGISKVHNPAELPLALKTACTL--DTKILVEKAIKGREIEVAVLGNAQP 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            + V     P SDFY YE KY   ++   +PA+IP  + ++V+ LA  A +A+GCRG+SR
Sbjct: 244 EVSVCGEIEPGSDFYDYEDKYIHNSAKTFIPARIPSVLQEKVRELALRAFKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  S+ +   E+N  PG T +S++P++   +G  F EL   ++E A
Sbjct: 304 IDFFVDEESKSIILNEVNTIPGFTDISMYPKLMEASGIPFPELATRLLELA 354


>gi|313673681|ref|YP_004051792.1| d-alanine--d-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
 gi|312940437|gb|ADR19629.1| D-alanine--D-alanine ligase [Calditerrivibrio nitroreducens DSM
           19672]
          Length = 298

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 95/293 (32%), Positives = 157/293 (53%), Gaps = 10/293 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG+SSER+VS+ +G    +AL   GF     +DVD S+   L   KPD  +  LH
Sbjct: 6   IAVLYGGLSSERDVSIKTGNGIYNALLRKGFKNSFLLDVDWSLPEKLIKHKPDFCYIALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG VQ +LE + IPY   G+ ASA+S DK+ +K+++ S  +P             
Sbjct: 66  GRYGEDGTVQGLLEYMRIPYNGPGVTASAISFDKVITKKILKSVNIPTADYFEYKNEQSS 125

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P V+KP + GS++G+ ++ +D+     +  +    + +++++E+++ G ELT 
Sbjct: 126 P----FYPCVVKPAREGSTIGVTIVYEDKEFIPAIEDAK--KYDNKIIVERFIKGKELTI 179

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D  L +     PK  FY Y  KY+   + ++    +     + V+++A  A++ +G
Sbjct: 180 SIIDDLVLPIIW-IKPKKGFYDYTSKYTKGMTEYLFETGLNAKEEEMVKKVAKDAYEVVG 238

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           C G SR D ++D        LEIN  PGMT  S+ P  AA  G ++ EL+  +
Sbjct: 239 CEGASRVDIIYD--GDIPNVLEINTLPGMTETSLLPNAAAKYGIAYDELVEML 289


>gi|330721446|gb|EGG99500.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC2047]
          Length = 297

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 85/299 (28%), Positives = 146/299 (48%), Gaps = 10/299 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNVLH 59
           MGG ++ER++SL SGKA  SAL  AG     ID        S+   L+    D  FN++H
Sbjct: 1   MGGRAAERDISLVSGKAVLSALLAAGVDAFAIDAFGPEGTDSLIEQLSAQPVDTVFNMVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFT 117
           G  GE+G +  +L  + +P T S + ASAL+M+K + K +     +P     +       
Sbjct: 61  GGEGENGSIPCLLAAMNLPVTGSAMAASALAMNKSQCKFLWQGMALPTARFQVLSAESDW 120

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++KP   GSS+G+  + + + +     ++    +   ++ E ++ G E 
Sbjct: 121 QQVVDDLGLPLMVKPGSEGSSIGMSKVDRVEDLKAAYEEAV--QYDQTVIAESWITGGEY 178

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++    L   ++   +   Y Y+ KY   ++ +++P  +  +  + +Q +A  A  +
Sbjct: 179 TVGIIKGQPLPGIKLETAREF-YDYQAKYVDDDTQYLIPCGLSPEKEQAMQAIALRAFDS 237

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCRG  R D + D    +   LE+N  PGMT  S+ P  AA  G SF  L+L ++  A
Sbjct: 238 LGCRGWGRVDLMLDEARDEFLVLEVNTIPGMTDHSLVPMAAASIGLSFDALVLQILSTA 296


>gi|228965549|ref|ZP_04126631.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228794142|gb|EEM41663.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 304

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+YV G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYVKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++ 
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|255306374|ref|ZP_05350545.1| D-alanine--D-alanine ligase [Clostridium difficile ATCC 43255]
          Length = 299

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ + D+           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +    V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G  
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEKAVRKGLEV--DEFVMIEKYIPG-G 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                + +  +  T      S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|163732128|ref|ZP_02139574.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
 gi|161394426|gb|EDQ18749.1| D-alanine--D-alanine ligase [Roseobacter litoralis Och 149]
          Length = 283

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 128/288 (44%), Positives = 176/288 (61%), Gaps = 8/288 (2%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SLSSG+ACA+AL D G+ V +ID  + +G  L  + PD   N LHG +GEDG VQ +LE 
Sbjct: 2   SLSSGQACAAALRDEGYDVVEIDAGQHLGARLIDVGPDAVLNCLHGRWGEDGCVQGLLEW 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + +PY+HSG+LASAL+MDK RSK+   + G+PV PS++     +   H++ PPYV+KP  
Sbjct: 62  MGVPYSHSGVLASALAMDKQRSKEAFVAAGLPVVPSVIAKAADVRIGHVMQPPYVVKPNN 121

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ ++ +  + P  L +        ++++E +  G ELT  V+GD  L VT+I  
Sbjct: 122 EGSSVGVYLVHEAANGPPQLSEDMP----QEVMVEAFAPGRELTTTVVGDRPLTVTDIV- 176

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               +Y Y+ KY    S HV+PA IP DI+      A  AH A+GCRG+SR+DF +D   
Sbjct: 177 -TDGWYDYDAKYKPGGSHHVVPADIPADIFDMCMDYALRAHHALGCRGVSRTDFRWDETK 235

Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +  LE N QPGMT  S+ PE AA  G  F +L  WMVEDASC R
Sbjct: 236 GAAGLILLETNTQPGMTATSLSPEQAAATGMPFGKLCAWMVEDASCDR 283


>gi|126699011|ref|YP_001087908.1| D-alanine--D-alanine ligase [Clostridium difficile 630]
 gi|254974958|ref|ZP_05271430.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-66c26]
 gi|255092347|ref|ZP_05321825.1| D-alanine--D-alanine ligase [Clostridium difficile CIP 107932]
 gi|255100429|ref|ZP_05329406.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-63q42]
 gi|255314086|ref|ZP_05355669.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-76w55]
 gi|255516765|ref|ZP_05384441.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-97b34]
 gi|255649864|ref|ZP_05396766.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-37x79]
 gi|260683022|ref|YP_003214307.1| D-alanine--D-alanine ligase [Clostridium difficile CD196]
 gi|260686620|ref|YP_003217753.1| D-alanine--D-alanine ligase [Clostridium difficile R20291]
 gi|306519962|ref|ZP_07406309.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-32g58]
 gi|115250448|emb|CAJ68271.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Clostridium difficile]
 gi|260209185|emb|CBA62427.1| D-alanine--D-alanine ligase B [Clostridium difficile CD196]
 gi|260212636|emb|CBE03671.1| D-alanine--D-alanine ligase B [Clostridium difficile R20291]
          Length = 299

 Score =  180 bits (457), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ + D+           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +    V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G  
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVEEAVRKGLEV--DEFVMIEKYIPG-G 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                + +  +  T      S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|218961626|ref|YP_001741401.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
 gi|167730283|emb|CAO81195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Candidatus Cloacamonas
           acidaminovorans]
          Length = 314

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/312 (33%), Positives = 161/312 (51%), Gaps = 20/312 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAF 55
           + VL GG S EREVSL SG   ASAL + G+ V +ID         +   + + +P L F
Sbjct: 4   IVVLKGGTSPEREVSLVSGAEIASALRNMGYIVQEIDPADYPKLSDLLTAVQNEQPLLVF 63

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N LHG  GE+G +QA L L  I +T SG  AS  SMDK  SK +  + G+PV   IL+  
Sbjct: 64  NGLHGGSGENGELQAALSLAGIKFTGSGFKASCFSMDKYISKLIALAEGIPVPKYILMRE 123

Query: 116 F----------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                           + +  P ++KP   GSS+GI  ++  + +   + ++  ++H   
Sbjct: 124 DLLEDYQDVEDYSGFSNQLGLPIIVKPNDAGSSVGISRVECLEDLKPAVQKALQYSHS-- 181

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+Y+ G ELT  ++   +        P   +Y Y  KY+   + +  PA+I   + K
Sbjct: 182 VLLEEYIPGRELTVTIIDSEAY-PVVEIKPLEGWYDYTNKYTHGKTKYEAPAQIDDTVAK 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            +Q  A    +A G  G +R DF +D L  K ++LE+N  PGMT +S+ P  A  AG SF
Sbjct: 241 LLQLYALRLWKAFGLSGYARIDFRYDGL--KPYFLEVNTLPGMTSLSLTPMAAKAAGMSF 298

Query: 286 RELLLWMVEDAS 297
           +ELL  ++  A+
Sbjct: 299 QELLQKIIYIAA 310


>gi|229044313|ref|ZP_04191982.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229127959|ref|ZP_04256943.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228655521|gb|EEL11375.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228725027|gb|EEL76315.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
          Length = 304

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLTCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|162455138|ref|YP_001617505.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
 gi|161165720|emb|CAN97025.1| D-alanine-D-alanine ligase B [Sorangium cellulosum 'So ce 56']
          Length = 345

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 109/305 (35%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFN 56
           + V+MGG S ER+VSL SG A A ALE  G+ V +I +       +   L   + D AF 
Sbjct: 10  VGVVMGGSSGERDVSLRSGAAVAEALEARGYDVVRITLGDRFGAELCATLQRARLDAAFL 69

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            LHG  GEDG VQ +LEL ++PYT S +LASAL+MDK+++K++     VP  P   V   
Sbjct: 70  ALHGRLGEDGCVQGVLELAQVPYTGSSVLASALAMDKLKAKEMFRLHNVPTPPYYTVGAN 129

Query: 117 TMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               +          P ++KP   GSSLG+      + +   L  +      D  ++E++
Sbjct: 130 QDLEELDAVHGSFGFPVIVKPRGEGSSLGVTKAGSLEELKSALALAF--EFDDAAIVERF 187

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G E+  G++    L      VPK   Y YE KY+   + + +PA++P   Y+ V  LA
Sbjct: 188 VAGTEVNVGILDGKVLGAI-EIVPKKGLYDYEAKYTPGMTEYHMPARLPPTRYRGVLNLA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A QA+GC G  R D L      + + LE+N  PGMT  S+ P++A  AGY F +L   
Sbjct: 247 ERAAQALGCTGAVRVDLLVTGGENE-YVLEVNTLPGMTQTSLLPKIAEAAGYEFGDLCEA 305

Query: 292 MVEDA 296
           ++  A
Sbjct: 306 ILASA 310


>gi|83720293|ref|YP_441668.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|167580475|ref|ZP_02373349.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis TXDOH]
 gi|167618583|ref|ZP_02387214.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis Bt4]
 gi|257137837|ref|ZP_05586099.1| D-alanine--D-alanine ligase [Burkholderia thailandensis E264]
 gi|123537601|sp|Q2SZI1|DDL_BURTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|83654118|gb|ABC38181.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis E264]
          Length = 312

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAKDIVAKLGMPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +      E +R+A  A
Sbjct: 190 GGEYTACIAADLDLPLIKIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|255655421|ref|ZP_05400830.1| D-alanine--D-alanine ligase [Clostridium difficile QCD-23m63]
 gi|296451413|ref|ZP_06893150.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296880238|ref|ZP_06904204.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
 gi|296259680|gb|EFH06538.1| D-alanine--D-alanine ligase [Clostridium difficile NAP08]
 gi|296428827|gb|EFH14708.1| D-alanine--D-alanine ligase [Clostridium difficile NAP07]
          Length = 299

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AV+MGGISSEREVSL+SGK   + L+   ++V ++ + D+           D A   LH
Sbjct: 3   IAVIMGGISSEREVSLNSGKEIYNNLDKNKYEVVKVIIDDKKDIFTKIPEDIDFAILALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRF 116
           G FGEDG +Q+ILE ++IPY+  G L S + MDK  +K+++    +P  P +    V+  
Sbjct: 63  GKFGEDGCIQSILETMDIPYSGCGPLCSGMCMDKNITKKMLRDSNLPTAPWVLVKSVDEI 122

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  IKP  GGSS+    I     +   + +       + ++IE+Y+ G  
Sbjct: 123 DYDEIDNIGYPVFIKPNSGGSSVATFFIHSKDEVGEAVRKGLEV--DEFVMIEKYIPG-G 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                + +  +  T      S F+ YE KYS           +  ++ K V  ++    +
Sbjct: 180 EYTSFILNGEVFPTISIKSDSGFFDYEAKYSVEKGAKEEVVYLDEELQKRVNEISETCWK 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              C+   R D +        + LE+N  PGMT  S+ P  AA  G  + ELL  ++E
Sbjct: 240 IFNCKAYVRVDMIISE--GIPYVLELNTLPGMTQTSLIPRSAAARGIKYSELLDKLIE 295


>gi|169794350|ref|YP_001712143.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AYE]
 gi|213159075|ref|YP_002321073.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|215481906|ref|YP_002324088.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|301344639|ref|ZP_07225380.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB056]
 gi|332850156|ref|ZP_08432543.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332868968|ref|ZP_08438527.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
 gi|226723896|sp|B7GV75|DDL_ACIB3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226723897|sp|B7ICE3|DDL_ACIB5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485851|sp|B0V9F7|DDL_ACIBY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169147277|emb|CAM85136.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii AYE]
 gi|213058235|gb|ACJ43137.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB0057]
 gi|213987599|gb|ACJ57898.1| D-alanine--D-alanine ligase B [Acinetobacter baumannii AB307-0294]
 gi|332731005|gb|EGJ62311.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013150]
 gi|332733011|gb|EGJ64213.1| D-ala D-ala ligase protein [Acinetobacter baumannii 6013113]
          Length = 308

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 152/298 (51%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P   I       
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLD 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T
Sbjct: 128 SVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF EL + +++ 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 302


>gi|228908338|ref|ZP_04072183.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228851379|gb|EEM96188.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 304

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|229110023|ref|ZP_04239600.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228673376|gb|EEL28643.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
          Length = 304

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|218897568|ref|YP_002445979.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228901168|ref|ZP_04065370.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218542332|gb|ACK94726.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228858457|gb|EEN02915.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 304

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|260654529|ref|ZP_05860019.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
 gi|260630806|gb|EEX49000.1| D-alanine--D-alanine ligase B [Jonquetella anthropi E3_33 E1]
          Length = 321

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 102/307 (33%), Positives = 146/307 (47%), Gaps = 13/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           + VL GG S EREVSL SG+A   AL+ AG++   ID+     +  A   P DL F VLH
Sbjct: 7   IVVLYGGNSPEREVSLVSGQAVEKALKSAGYETELIDLTGPEKVFEALKTPCDLFFPVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG +QA L+L   PY  SG LAS L MDK  SK +    G+     +LV +    
Sbjct: 67  GSWGEDGRLQAALDLSGRPYVGSGPLASGLCMDKWASKALFDRAGLHTPKGVLVRQKDGT 126

Query: 120 -------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                           ++KP  GGS++   V+   + +   L  +     G   L+E+++
Sbjct: 127 GDLPGLLRALERYGKLIVKPNCGGSTVATSVVSCSEELLPALNAAWEQKSGG-ALVEEFI 185

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ELT  +    S          +P S FY Y+ KY+   S +  PA++  +  + +  
Sbjct: 186 PGRELTVAMWDSGSGPEALPAVEILPASGFYDYQAKYTDGASRYESPARLSGEEARALSE 245

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  A +A+G R   R+DF   P   +   LEIN  PGMT  S+ P  A  AG    + L
Sbjct: 246 AAVAAWRAVGLRDYGRADFRL-PPDGEPVLLEINTAPGMTSHSLVPMAAKSAGMELPDFL 304

Query: 290 LWMVEDA 296
             +   A
Sbjct: 305 SRLARRA 311


>gi|254253333|ref|ZP_04946651.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
 gi|124895942|gb|EAY69822.1| D-alanine-D-alanine ligase [Burkholderia dolosa AUO158]
          Length = 313

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P D   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPADKEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAQGNA-YFLEVNTAPGMTDHSLPPKAARAIGIGYSELVVKVL 307


>gi|270159086|ref|ZP_06187742.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|289166078|ref|YP_003456216.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
 gi|269987425|gb|EEZ93680.1| D-alanine--D-alanine ligase A [Legionella longbeachae D-4968]
 gi|288859251|emb|CBJ13185.1| D-alanine--D-alanine ligase A [Legionella longbeachae NSW150]
          Length = 364

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 150/352 (42%), Gaps = 55/352 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44
            +L GG S E E+SL S  +  + L+D  + +  I +D+                  + +
Sbjct: 8   VLLYGGKSGEHEISLISAASVLAHLDDKKYNIIPIAMDKDGLLHQHQYQDLLASKEKLPV 67

Query: 45  VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           V    KP              D+ F ++HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 68  VTEKSKPLAGLLINGRLSVDADIVFPIVHGPLYEDGCLQGMLELSGVAYVGCDVLSSAIG 127

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  ++++    G+      +++          F  +       P  +KP   GSS+GI
Sbjct: 128 MDKDMTRRIACINGLKSADYKVLSWHTSTSERQRFCQEVAAEFGWPLFVKPCAMGSSVGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192
              K    +   +  +    + +++L+E +V G E+           G    +      +
Sbjct: 188 HKAKNMDELINAVEDAL--RYDEEILVEAFVTGREIELSVLESVIPAGKPRVSFAGEIRV 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA +   +Y+++++ A      + C+G++R DF  + 
Sbjct: 246 NHPDGFYSYSAKYLESGKTDLIIPAHLSHTLYEQLKQAAADIFLRLKCKGMARVDFFVNE 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS----CLR 300
            +  +++ E+N  PG T +S++P++   +G ++ +LL  ++  A     C R
Sbjct: 306 KTETIYFNEVNTLPGFTSISMYPKLWQASGLAYPDLLDELIRIAMVHQNCRR 357


>gi|289671016|ref|ZP_06492091.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. musacearum
           NCPPB4381]
          Length = 318

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +   GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  + +  +   LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P         ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYLAEDTQYLCPGLEGDAE-AQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNTAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|161526003|ref|YP_001581015.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189349280|ref|YP_001944908.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221202516|ref|ZP_03575546.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
 gi|221208162|ref|ZP_03581167.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221213275|ref|ZP_03586250.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|229463736|sp|A9AI94|DDL_BURM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160343432|gb|ABX16518.1| D-alanine--D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|189333302|dbj|BAG42372.1| D-alanine-D-alanine ligase [Burkholderia multivorans ATCC 17616]
 gi|221166727|gb|EED99198.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD1]
 gi|221172065|gb|EEE04507.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2]
 gi|221177611|gb|EEE10028.1| D-alanine--D-alanine ligase B [Burkholderia multivorans CGD2M]
          Length = 313

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 147/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRDDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P D   +++RLA  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPADQEAQLKRLARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAIGISYSELVVKVL 307


>gi|228939729|ref|ZP_04102310.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972592|ref|ZP_04133196.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979199|ref|ZP_04139542.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228780556|gb|EEM28780.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228787133|gb|EEM35108.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819961|gb|EEM66005.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
          Length = 304

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|294666421|ref|ZP_06731665.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292603790|gb|EFF47197.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 318

 Score =  180 bits (456), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIAALAKALVAQQFDRVFNVLHG 78

Query: 61  NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +   GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSDVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  + +  +   LL+EQ ++
Sbjct: 139 AEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P  +  +   ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAEDTQYLCP-GLEGEAEAQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|189183856|ref|YP_001937641.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
 gi|189180627|dbj|BAG40407.1| D-alanine-D-alanine ligase [Orientia tsutsugamushi str. Ikeda]
          Length = 324

 Score =  180 bits (456), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 170/301 (56%), Gaps = 5/301 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           + +L GG+S+EREVSL S     +AL   G++V++IDV + + + L+ + +P   FN L 
Sbjct: 27  VVILYGGMSAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITRPYTVFNCLV 86

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N     
Sbjct: 87  GTYGEDGCIPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNV 146

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  PYVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL  
Sbjct: 147 IDDPILRPYVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQV 203

Query: 180 GVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            ++    + + EI +     FY Y+ KYS   + H++P  +P++   +V  +A   ++  
Sbjct: 204 ALLDGQVVGILEIKMLKDKIFYDYQSKYSPGFAEHIIPPMLPVNTVNQVINIAEKVYKIF 263

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            CRG  R + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C
Sbjct: 264 DCRGPCRLECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKC 323

Query: 299 L 299
            
Sbjct: 324 D 324


>gi|194364382|ref|YP_002026992.1| D-alanine--D-alanine ligase [Stenotrophomonas maltophilia R551-3]
 gi|194347186|gb|ACF50309.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 320

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 113/298 (37%), Positives = 164/298 (55%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG+    AL+  G     +D   ++   LA    D  FN+LHG
Sbjct: 20  VAVLLGGSSSEREVSLDSGRNVLEALQSRGVDAFAVDGIPALAKALAAGGIDRVFNILHG 79

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFT 117
           + G  EDG+VQ +++   +PYT S +L SALSMDK+R+KQV  S G+P      V     
Sbjct: 80  HNGGGEDGIVQGLMDAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPQYRKVTAEDV 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P V+KP   GSS+GI  +  D  +   +  ++   +  QLL+EQ V G EL
Sbjct: 140 HANAAALGLPVVVKPANEGSSVGISRVTDDAGLDEAVALAA--RYDGQLLMEQMVIGDEL 197

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  ++GD +L      VPK  +Y Y  KY + ++ ++ P        + ++R+A  A +A
Sbjct: 198 TVAILGDVALPSI-RIVPKGQWYDYNAKYIAEDTQYLCPGLDGDAEDE-IRRIALAAFRA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            GCRG  R D + D  S + F LE+N  PGMT  S+ P+ A  AG  F EL+  ++E 
Sbjct: 256 AGCRGWGRVDVMRDRDSGRFFLLEVNTAPGMTSHSLVPKAARQAGIGFEELVWRVLEQ 313


>gi|75764291|ref|ZP_00743831.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74488221|gb|EAO51897.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 311

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|326940323|gb|AEA16219.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 311

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 88/303 (29%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAEINERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|167765979|ref|ZP_02438032.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
 gi|167712336|gb|EDS22915.1| hypothetical protein CLOSS21_00470 [Clostridium sp. SS2/1]
          Length = 361

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 13  VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGKWLLVDGVKDIEDGSWRE 72

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 73  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD +   +    
Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250

Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                  + FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               S +V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 311 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359


>gi|56964671|ref|YP_176402.1| D-alanyl-alanine synthetase A [Bacillus clausii KSM-K16]
 gi|81365565|sp|Q5WDW9|DDL_BACSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56910914|dbj|BAD65441.1| D-alanine--D-alanine ligase A [Bacillus clausii KSM-K16]
          Length = 368

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 157/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V+ I +D+     +              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVEAIDKDRFDVTLIGIDKQGQWHINEASNFLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +  L  +
Sbjct: 66  LIELNKSNQGVALIPGKEDRQLVGTANQSVLDQLDVVFPIVHGTLGEDGSLQGMFRLANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V   +   R              +  P  IK
Sbjct: 126 PFVGSNVLGSAVSMDKDIAKRLLQGAGLHVASGLTFTRAAKETIDFESIADQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+     +      + ++   ++  ++LIE  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVNKATTEAEFTAAIEEAF--SYDHKVLIEAAIKGREIECAVLGNDYPKAST 243

Query: 192 I--AVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P+  FYSY+ KY   +     +PA +P D+ + +Q +A  A++ + C G++R D 
Sbjct: 244 CGEILPQDGFYSYDAKYIDEDGAKLAIPADLPEDVNRRIQDIAIQAYKTLNCEGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + +V   E+N  PG T +S++P++   +G S+++L+  ++E A
Sbjct: 304 FLTE-TGEVIINEVNTLPGFTKISMYPKLWEASGVSYQDLITTLIELA 350


>gi|51891650|ref|YP_074341.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
 gi|51855339|dbj|BAD39497.1| D-alanine--D-alanine ligase [Symbiobacterium thermophilum IAM
           14863]
          Length = 366

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 157/344 (45%), Gaps = 50/344 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E EVSL S +    AL+ + ++V  + + +    +                 
Sbjct: 9   LLFGGRSGEHEVSLMSARNVLEALDRSKYEVIPVGITKEGRWLQVGDPLRALTEGVAAAG 68

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                    AH  P + F VLHG +GEDG +Q +LE+  +PY  
Sbjct: 69  GRPVGLLGDPSYSGPVPLSDGLRPAAHDGPVVFFPVLHGTYGEDGTIQGLLEMANVPYVG 128

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKP 132
            G+LAS+++MDK  +K +    G+ V P  +  R   +             +  P  +KP
Sbjct: 129 CGVLASSVAMDKGVAKALFRQAGLEVGPYRVYLRRDWERHPEQIRADVSAHLRYPVFVKP 188

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI  +K+ + +   + +++ ++    +        IE+      D    V   
Sbjct: 189 ANLGSSVGITKVKRPEDLDRAMDEAARFDRRIIVEQGIDAREIEVAVLGNDDPIASVPGE 248

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P ++FY Y  KY S  S   +PA +P D+ +E +R A +A +AI   G++R DF  + 
Sbjct: 249 ILPGAEFYDYTDKYFSGASQTRIPADLPDDLVEEFRRQAVVAFKAIDGSGMARVDFFLER 308

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++F  E+N  PG T +S++P++   +G  + ELL  +++ A
Sbjct: 309 GTNRIFINEVNTIPGFTNISMYPKLWEASGIGYGELLDRLIQLA 352


>gi|168216305|ref|ZP_02641930.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182381721|gb|EDT79200.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 302

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 156/299 (52%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++    ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKRDILEKVTGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +    
Sbjct: 63  KFGEDGTVQAFLDIIDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  GGSS+    + K + I   +       + ++++IE +V G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKDAV--MEGLKYDEEVIIESFVKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESIGISYSKFIDLIIETS 296


>gi|302873595|ref|YP_003842228.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307688224|ref|ZP_07630670.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302576452|gb|ADL50464.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 300

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 155/299 (51%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGGISSERE+SL SG+A  +A++ + ++   I +D    ++      D AF  LHG
Sbjct: 3   VGILMGGISSEREISLKSGEAVFNAIDKSKYEPVAIVIDSKEDIINKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ++L+ L IPY+  G + SA+ MDK  +K+V+ S G+       V       
Sbjct: 63  QFGEDGTVQSVLQTLNIPYSGCGPMTSAICMDKDMTKKVLKSQGINTARWTTVRAIQDID 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             L   I  P+ +KP  GGSS+    + K + +   +    +  +  +++IE+YV G E+
Sbjct: 123 YALLDSIGYPFFVKPNSGGSSVATNRVDKKEQVEAAV--VEALKYDTEVMIEEYVKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++            P  +F+ +  KY    +  ++  ++  ++ K V+ +A     A
Sbjct: 181 TCSIINR-KTYPIVAIKPTGEFFDFTSKYQDNGAEEIV-VQLEENLSKTVEAMAIACWDA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +      R D +    +   + LE+N  PGMT  S+ P+  A AG S+ +L+  ++E++
Sbjct: 239 LKFSAYVRVDMII--KNNVPYVLELNTLPGMTKNSLLPKSVAGAGISYTDLISLIIEES 295


>gi|108760939|ref|YP_633740.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108464819|gb|ABF90004.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 318

 Score =  180 bits (455), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 112/304 (36%), Positives = 166/304 (54%), Gaps = 8/304 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+GG+S+ER+VSL +G+A + AL   G+ V +IDV R +   LA  K D+A+  +HG
Sbjct: 18  VGVLLGGMSAERDVSLRTGEAVSGALRGLGYDVVEIDVGRDLPARLAAEKVDVAWLAVHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LE L IPYT SG+LASAL MDK+ +KQV  + G+P              
Sbjct: 78  RYGEDGCLQGLLESLFIPYTGSGVLASALGMDKVYAKQVYVAHGIPTPAYRSFKDAASAL 137

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                     P V+KP + GSS+G+ + K   +    +  + +  +   LL+EQ+V G E
Sbjct: 138 AAADSLPFPFPVVVKPSREGSSVGVHICKTRDAYEAAV--TDAAKYAGTLLVEQFVKGRE 195

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +  GV+ D +L V E+   +  +       +   + ++ PA +P D Y  V  +   AHQ
Sbjct: 196 VQGGVLDDEALGVIEVRAAREFYDYDAKYKAGTGTQYLFPAPLPPDQYARVNEVCLAAHQ 255

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC G SRSD +       VF LE N  PGMT  S+ P++AA  G  F  L   ++  A
Sbjct: 256 ALGCSGGSRSDVIVT-DGGDVFLLETNTLPGMTASSLLPKIAAGRGIDFPALCERLLLGA 314

Query: 297 SCLR 300
            CL+
Sbjct: 315 -CLK 317


>gi|189219419|ref|YP_001940060.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
 gi|229485964|sp|B3DVV9|DDL_METI4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189186277|gb|ACD83462.1| D-alanine-D-alanine ligase [Methylacidiphilum infernorum V4]
          Length = 303

 Score =  179 bits (454), Expect = 3e-43,   Method: Composition-based stats.
 Identities = 99/294 (33%), Positives = 147/294 (50%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ERE+SL + KA   AL   G+++S IDV      +      ++ F  +HG
Sbjct: 9   IAVLKGGPSEEREISLRTAKAVEDALSSLGYEISSIDVTTEKFEIPRDA--EICFLCIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +Q +L    IP+T S   +S  + DK  SK +    G+P  P           
Sbjct: 67  SFGEDGQIQRLLMRRGIPFTGSDASSSEKAFDKAWSKTLFIKGGIPTPPF---CVVGDGK 123

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +    PPYVIKP + GSS+GI  +   + +   + +S+   +   +L E  + G ELT G
Sbjct: 124 KIPFDPPYVIKPSRQGSSIGIEFVYDIKELDQAIKKST--QYDHVVLAEALITGKELTVG 181

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++   +L       PK  FY Y  KY+   ST+  PA + +D    VQ+ A  A   +GC
Sbjct: 182 ILDGKAL-PVVEIKPKEGFYDYHHKYTKGASTYFCPAPLTVDQTSAVQKTALDAFNVLGC 240

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               R D +    +   + LEIN  PGMT  S+FP  A  +G +F +L   ++E
Sbjct: 241 SVYGRVDIILS-DNGIPWVLEINTIPGMTETSLFPMAAKASGMNFAQLCEKILE 293


>gi|317497210|ref|ZP_07955534.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895455|gb|EFV17613.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 361

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 89/350 (25%), Positives = 150/350 (42%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG SSE +VS  S       ++   + V  + + +    +L              
Sbjct: 13  VVVIFGGDSSEHDVSCLSATTVIKNMDTEKYNVILVGITKEGRWLLVDGVKDIEDGSWRE 72

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG VQ + EL +IPY   
Sbjct: 73  GEVKAFISPDTTTRSLVILAEGTYKLQKVDVIFPVLHGMNGEDGTVQGLFELSKIPYVGC 132

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + V     +         +  I  P  +KP  
Sbjct: 133 GVLASAVSMDKVYTKIIVDHIGIDQAKFVHVRESDFEHLEEAMDRVEKEIPYPIFVKPSC 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+   +  + +   L ++    H   +L E+ + G E+ C V+GD +   +    
Sbjct: 193 AGSSKGVSKAENRKELEAALYEAV--KHDRNILCEETIVGREVECAVLGDRTQVKSTCVG 250

Query: 195 PK-----SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                  + FY ++ KY++  S  V+  ++P +  ++++  A    +A+   G+SR DF 
Sbjct: 251 EILAAEEAAFYDFDAKYNNAESKTVVDPEMPEESKRKIKEDAEAIFRAVDGFGLSRVDFF 310

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               S +V + EIN  PG T +S++P +    G    ELL  +++ A   
Sbjct: 311 L-EESGRVVFNEINTLPGFTSISMYPMLWKACGLDIPELLDTLIDQAMTR 359


>gi|168212545|ref|ZP_02638170.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170716043|gb|EDT28225.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 302

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 92/300 (30%), Positives = 158/300 (52%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++MGGISSEREVSL+SG++  + ++   ++V +I ++ +   +L  +K  D A   LH
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVIKIIIN-NKRDILEKVKGLDFALLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +   
Sbjct: 62  GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  +KP  GGSS+    + K + I   +       + ++++IE ++ G E
Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYDEEVIIESFIKGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    +
Sbjct: 180 ITCPIFNG-EFFPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|121606304|ref|YP_983633.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
 gi|190359203|sp|A1VST4|DDL_POLNA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120595273|gb|ABM38712.1| D-alanine--D-alanine ligase [Polaromonas naphthalenivorans CJ2]
          Length = 325

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 100/305 (32%), Positives = 153/305 (50%), Gaps = 11/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG     AL   G      D        L        F  LHG
Sbjct: 11  VAVLMGGRSAEREISLMSGSGVVQALRSQGIDAHAFDPAERDLGELKTGGFARCFIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  LELL IPYT SG++AS++++DK+ +K+++ S  +P    +L+ R     
Sbjct: 71  RFGEDGTVQGALELLGIPYTGSGVMASSMAIDKVMTKRLLLSESLPTPRYVLLRRGGYSP 130

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             +      +  P ++KP + GSSLG  + K  +   +    + +      +L EQ++ G
Sbjct: 131 AQVDAIVDTLGLPLIVKPAREGSSLG--LSKVTERAAMAAAVALAEKMDADILCEQFISG 188

Query: 175 IELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+TC        A        V     Y Y+ KY +  + +++P  +P      +Q+L 
Sbjct: 189 DEVTCPVLGTGEQARALPVIRIVAPEGNYDYQNKYFTDTTQYLVPCGLPAGEEAAIQQLV 248

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + + CRG +R+D + D  +RK + LEIN  PGMT  S+ P  A  AG S+  L + 
Sbjct: 249 LQAFRTLNCRGWARADVMIDQATRKPYLLEINTSPGMTGHSLVPMSARAAGISYEALCVE 308

Query: 292 MVEDA 296
           +++ A
Sbjct: 309 VLKTA 313


>gi|172059551|ref|YP_001807203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
 gi|229463734|sp|B1YSS6|DDL_BURA4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171992068|gb|ACB62987.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MC40-6]
          Length = 313

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLPAEQETELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307


>gi|171057215|ref|YP_001789564.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
 gi|170774660|gb|ACB32799.1| D-alanine--D-alanine ligase [Leptothrix cholodnii SP-6]
          Length = 329

 Score =  179 bits (454), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 96/295 (32%), Positives = 156/295 (52%), Gaps = 11/295 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+ERE+SL SG     AL   G      D        L H      F  LHG
Sbjct: 12  VAVLMGGSSAEREISLMSGAGVLQALLSQGVDAHAFDPAERELAELKHEGYARCFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LELL IPYT SG++ASA++MDK+ +K++  + G+P    + +      +
Sbjct: 72  RHGEDGTVQGALELLGIPYTGSGVMASAIAMDKVMTKRIWLAEGLPTPRYVWLASDDQGA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P ++KP + GSS+G+  + +   +   +  S+   +   +L E +++G
Sbjct: 132 ERVGRVSAELGLPLIVKPPREGSSIGVTKVVEAAQVGAAVALSA--GYDADVLCEAFIEG 189

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELTC V+G+ +          VP +  Y Y+ KY +    ++ P+ +  ++ +E+QR+ 
Sbjct: 190 EELTCPVLGEGAHAVALPVIRIVPPAAGYDYQNKYFTDEVQYLCPSGLSAELEREIQRIT 249

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
             +++A+GCRG  R+D +     ++ F LE+N  PGMT  S+ P  A  +G S+ 
Sbjct: 250 LASYRALGCRGWGRADLMLRAGDQQPFLLEMNTSPGMTGHSLVPMSARASGISYE 304


>gi|126441025|ref|YP_001060533.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 668]
 gi|190359123|sp|A3NDW2|DDL_BURP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126220518|gb|ABN84024.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 668]
          Length = 312

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAQDIAAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +      E +R+A  A
Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|167904388|ref|ZP_02491593.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei NCTC
           13177]
 gi|237813917|ref|YP_002898368.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
 gi|254180548|ref|ZP_04887146.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|184211087|gb|EDU08130.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1655]
 gi|237505584|gb|ACQ97902.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia pseudomallei
           MSHR346]
          Length = 312

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAQAIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +      E +R+A  A
Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|53720633|ref|YP_109619.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei K96243]
 gi|53726038|ref|YP_104092.1| D-alanine--D-alanine ligase [Burkholderia mallei ATCC 23344]
 gi|67643627|ref|ZP_00442372.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|76810239|ref|YP_334912.1| D-alanine--D-alanine ligase [Burkholderia pseudomallei 1710b]
 gi|121598695|ref|YP_991819.1| D-alanine--D-alanine ligase [Burkholderia mallei SAVP1]
 gi|124384751|ref|YP_001027312.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10229]
 gi|126449009|ref|YP_001082751.1| D-alanine--D-alanine ligase [Burkholderia mallei NCTC 10247]
 gi|126453261|ref|YP_001067784.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|134280198|ref|ZP_01766909.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|166998635|ref|ZP_02264493.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|167721338|ref|ZP_02404574.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei DM98]
 gi|167740308|ref|ZP_02413082.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 14]
 gi|167817527|ref|ZP_02449207.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 91]
 gi|167825927|ref|ZP_02457398.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 9]
 gi|167847413|ref|ZP_02472921.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei B7210]
 gi|167896001|ref|ZP_02483403.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 7894]
 gi|167912648|ref|ZP_02499739.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 112]
 gi|167920615|ref|ZP_02507706.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei BCC215]
 gi|217425698|ref|ZP_03457188.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|226199604|ref|ZP_03795160.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|242317528|ref|ZP_04816544.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|254178899|ref|ZP_04885553.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|254191010|ref|ZP_04897516.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|254199055|ref|ZP_04905470.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|254202813|ref|ZP_04909176.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|254208155|ref|ZP_04914505.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|254260710|ref|ZP_04951764.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
 gi|254299364|ref|ZP_04966814.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|254357641|ref|ZP_04973915.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|81379043|sp|Q63QJ9|DDL_BURPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|81604222|sp|Q62GS9|DDL_BURMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123597910|sp|Q3JNE1|DDL_BURP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359119|sp|A3MR65|DDL_BURM7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359120|sp|A2S5U3|DDL_BURM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359121|sp|A1V0R6|DDL_BURMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359122|sp|A3NZL3|DDL_BURP0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52211047|emb|CAH37035.1| D-alanine--d-alanine ligase B [Burkholderia pseudomallei K96243]
 gi|52429461|gb|AAU50054.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 23344]
 gi|76579692|gb|ABA49167.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710b]
 gi|121227505|gb|ABM50023.1| D-alanine--D-alanine ligase B [Burkholderia mallei SAVP1]
 gi|124292771|gb|ABN02040.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10229]
 gi|126226903|gb|ABN90443.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106a]
 gi|126241879|gb|ABO04972.1| D-alanine--D-alanine ligase B [Burkholderia mallei NCTC 10247]
 gi|134248205|gb|EBA48288.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 305]
 gi|147747060|gb|EDK54137.1| D-alanine--D-alanine ligase B [Burkholderia mallei FMH]
 gi|147752049|gb|EDK59116.1| D-alanine--D-alanine ligase B [Burkholderia mallei JHU]
 gi|148026705|gb|EDK84790.1| D-alanine--D-alanine ligase B [Burkholderia mallei 2002721280]
 gi|157809278|gb|EDO86448.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 406e]
 gi|157938684|gb|EDO94354.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pasteur
           52237]
 gi|160694813|gb|EDP84821.1| D-alanine--D-alanine ligase B [Burkholderia mallei ATCC 10399]
 gi|169656885|gb|EDS88282.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei S13]
 gi|217391286|gb|EEC31318.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 576]
 gi|225928350|gb|EEH24381.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei Pakistan
           9]
 gi|238525006|gb|EEP88436.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Burkholderia mallei GB8 horse 4]
 gi|242140767|gb|EES27169.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1106b]
 gi|243065314|gb|EES47500.1| D-alanine--D-alanine ligase B [Burkholderia mallei PRL-20]
 gi|254219399|gb|EET08783.1| D-alanine--D-alanine ligase B [Burkholderia pseudomallei 1710a]
          Length = 312

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 92/299 (30%), Positives = 143/299 (47%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGDSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +      E +R+A  A
Sbjct: 190 GGEYTACIAADLDLPLIRIVPAGEFYDYHAKYIANDTQYLIPCGLDAAKEAEFKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|168070642|ref|XP_001786885.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162660247|gb|EDQ48301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 327

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 159/306 (51%), Gaps = 11/306 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK     L+ + ++V  IDV +   L+      D A   LHG
Sbjct: 17  VGVIMGGVSSEREVSLMTGKEIVGRLDPSKYEVLPIDVAKREELIDRVRGIDFALLALHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ +LE + IPY+ SG+L+S+L MDK  +K+V+ + G+     + ++R     
Sbjct: 77  TFGEDGTVQGVLETMGIPYSGSGVLSSSLCMDKNLTKRVLKAEGIVTPDGVFLDRAMFTD 136

Query: 121 QHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    ++ P  +KP  GGSS+G  V + D+   L    + ++     +++E  V G
Sbjct: 137 GTWESRLAGLTYPLFVKPNAGGSSIG--VQRVDRQEALRAALAEAFRWDASVVVESMVTG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+TC ++    L V  I    ++++ YE K  S       P  +P D+   V+  A   
Sbjct: 195 QEITCPILDGELLPVLGIRSNGAEWFDYEAK-YSDGGAEERPITLPSDVEARVREAALAC 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ + CR  +R D +        + LE+N  PGMT  S+ P  AA AG S+ ELL  ++E
Sbjct: 254 YRVLQCRVYARVDMIL--QDGVPYVLEVNTLPGMTANSLLPRSAAAAGMSYGELLDRIIE 311

Query: 295 DASCLR 300
            +   R
Sbjct: 312 LSLVER 317


>gi|329927923|ref|ZP_08281951.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328938142|gb|EGG34538.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 305

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+     +
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W     ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRW--DRFVMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    +       P S+F+ Y               ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNG-DMLPIVSIKPNSEFFDY-ASKYEEGEADEQVIELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E + 
Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 SER 299


>gi|261408448|ref|YP_003244689.1| D-alanine--D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261284911|gb|ACX66882.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 305

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL +GK   + L+ + ++V  I++     L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLMTGKEMIAHLDKSRYEVYPIEIHDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ  L+ L IPYT SG+LAS+L MDK  SK+++   G+     I+V+     +
Sbjct: 63  AFGEDGTVQGTLDTLGIPYTGSGVLASSLCMDKDLSKKLLRYEGLHTADWIMVSCMEELA 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W     ++IEQ+++G E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRDSAGLASAVEEALRW--DRFVMIEQWIEGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+    +       P S+F+ Y               ++P ++ ++V+  A   ++A
Sbjct: 181 TCPVLNG-DMLPIVSIKPNSEFFDY-ASKYEEGEADEQVIELPTELQEQVRTAALQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +     +  + LE+N  PG+T  S+ P  A  AGYSF  LL  ++E + 
Sbjct: 239 MKCSVYARIDIIL--KGKIPYILEVNTLPGLTKTSLLPRSAEAAGYSFSGLLDALIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 SER 299


>gi|167586023|ref|ZP_02378411.1| D-alanine--D-alanine ligase [Burkholderia ubonensis Bu]
          Length = 313

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG+S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGVSAEREVSLNSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARAPEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAAKHDPIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +  D   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPVIKIVPAGEFYDYHAKYIADDTQYLIPCGLAADKEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D  +   ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDA-NGDAYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|170700185|ref|ZP_02891203.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170134917|gb|EDT03227.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 313

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 307


>gi|149178379|ref|ZP_01856970.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
 gi|148842797|gb|EDL57169.1| D-alanine--D-alanine ligase [Planctomyces maris DSM 8797]
          Length = 320

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 89/296 (30%), Positives = 140/296 (47%), Gaps = 9/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S+E E+SL SG+  A AL   G +V  +D              D+ F  LHG
Sbjct: 14  IVVLSGGESAESEISLKSGETVARALSSRGHQVKIVDPSLVDLDRFDWTGCDVVFLALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            +GEDG +Q+ L+ L IPY+      S L+  K  SK+      V     +L++      
Sbjct: 74  TYGEDGTIQSTLDRLGIPYSGCDAATSKLAFSKSASKERFIQHNVNTPSYVLIHESDDAG 133

Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP   GSSLG+ ++K  + +P  L +     +    ++E  + G 
Sbjct: 134 RIEQHARSMGYPLVVKPDAQGSSLGVTIVKSPEELPQALARCFH--YDSFGILESAIKGT 191

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  V+ D  L + +I  P    + YE KY+  ++ ++    +P ++ + + +    A 
Sbjct: 192 EWTVTVVDDQVLPLIQIQTPHEF-FDYEAKYTEDSTQYLFEFDLPTNVIQAIIKTGVNAC 250

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            A+G  GI R D L D   ++ + LE+N  PG T  S+ P+ AA AG  F EL   
Sbjct: 251 TALGTTGIVRVDLLVDRF-QQPWVLEVNTIPGFTDHSLVPKAAAKAGIDFGELCEQ 305


>gi|282899830|ref|ZP_06307792.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
 gi|281195312|gb|EFA70247.1| D-alanine--D-alanine ligase [Cylindrospermopsis raciborskii CS-505]
          Length = 357

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 84/340 (24%), Positives = 148/340 (43%), Gaps = 44/340 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S  A A AL        ++V    + ++       +       
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYEVCPFYIQKNGVWQGEEIARKVLES 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAEENTPNTVNLWQFPQKSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  +              +  +  P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRAQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  ++  Q +   L  +++++    +        +E            V       
Sbjct: 186 SSVGIAKVRSRQELETALDNAATYDRRIIVEAGVVAREVECAVLGNDHPQASVVGEISFN 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDFY YE KY+   +  ++PA +   + +++Q ++  A  A+   G++R DF +   + +
Sbjct: 246 SDFYDYETKYTQGKADLLIPAPLSQTVVEQIQEMSLKAFAAVDAAGLARVDFFYVESTGE 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345


>gi|332710922|ref|ZP_08430858.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
 gi|332350236|gb|EGJ29840.1| D-alanine--D-alanine ligase [Lyngbya majuscula 3L]
          Length = 348

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 101/341 (29%), Positives = 170/341 (49%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG+S E EVS+SS +A A+AL      + ++V  + + ++           VL  
Sbjct: 6   VGLLFGGVSGEHEVSISSARAIANALCADENASKYEVVPVYIQKNGIWTAVETIAQVLDS 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
             P                   D+ F +LHG  GEDG VQ +L+L+ +P+  SG+L SA+
Sbjct: 66  GTPLESAPSGNVWQFPAVVSEVDVWFPILHGPNGEDGTVQGLLKLMGVPFVGSGVLGSAV 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGGS 137
            MDK+  K V +  G+P    + V R  +              +  ++ PY +KP   GS
Sbjct: 126 GMDKLVMKTVYAQAGLPQVKYMEVLRSQVWSDPCVFTKLCDQIEETLNYPYFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195
           S+GI  ++    +   L +++  ++  +L++E+ V G E+ C V         V      
Sbjct: 186 SVGIAKVRSRSELEAALDKAA--SYDRRLIVEEGVVGREVECAVLGNDHPKASVVGEITY 243

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +SDFY YE KY+   +  ++PA +P D+  ++Q +A  A  A+   G+ R DF +   +R
Sbjct: 244 ESDFYDYETKYTQGQADLLIPAPLPTDVITQIQEMAIQAFTAVDGAGLGRVDFFYVEATR 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++F  EIN  PG T  S++P++ A  G SF EL+  +++ A
Sbjct: 304 EIFINEINTLPGFTATSMYPQLWAATGVSFPELVDQLIQLA 344


>gi|315648570|ref|ZP_07901668.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
 gi|315276049|gb|EFU39396.1| D-alanine--D-alanine ligase [Paenibacillus vortex V453]
          Length = 332

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/303 (31%), Positives = 160/303 (52%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSEREVSL++G+   S L+   ++V  I++D    L+      D+A   LHG
Sbjct: 3   VGVIMGGVSSEREVSLATGREMLSHLDKNRYEVCPIEIDDKRELISKTEGIDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT S +L+S++ MDK  SK+++   G+     ++V      +
Sbjct: 63  KYGEDGTVQGTLDSLGIPYTGSDVLSSSVCMDKDLSKKLLRCEGLFTADWVVVGSMQELA 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P V+KP  GGSS+G  +++    +   + ++  W     ++IEQ++DG E+
Sbjct: 123 AADVEGLGFPVVVKPNAGGSSIGTRIVRIQDELASAVEEALQW--DRAVMIEQFIDGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    +       P S+F+ Y  KY    +   +  ++P ++ K V   A   ++A
Sbjct: 181 TCPILNG-EMLPIVSIKPNSEFFDYTSKYVEGEADEQV-IELPPELRKAVNAAAIQCYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + LE+N  PG+T  S+ P  A  AG+SF  LL  ++E + 
Sbjct: 239 LKCSVYARIDIIL--KDNIPYILEVNTLPGLTRTSLLPRSAEAAGFSFSSLLDAIIEFSL 296

Query: 298 CLR 300
             R
Sbjct: 297 TER 299


>gi|167838001|ref|ZP_02464860.1| D-alanine--D-alanine ligase B [Burkholderia thailandensis MSMB43]
          Length = 312

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG+     L DAG      D  +     L       AFN LHG
Sbjct: 12  VAVLLGGESSEREVSLNSGRLVLQGLRDAGIDAHPFDPAQRPLAALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ +  +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAQDIVAKLGVPLFVKPASEGSSVAVEKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +      E +R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVANDTQYLIPCGLDAAREAEFKRVARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCADWGRADFMLDAAGN-PYFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|218437113|ref|YP_002375442.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7424]
 gi|226729270|sp|B7K991|DDL_CYAP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218169841|gb|ACK68574.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7424]
          Length = 352

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 156/341 (45%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A+AL        + +  + + +            VL  
Sbjct: 6   VGLLFGGRSGEHEVSINSAKAIATALSASENATKYDILPVYIRKDGCWQAPDVAQQVLES 65

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +P                     D+ F +LHG  GEDG +Q +L L+++PY  SG+L S
Sbjct: 66  AQPLSTPTDKSPQLWQFPPQVNQVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135
           A+ MDK+  K V +  G+P    + ++R  + S   I              P  +KP   
Sbjct: 126 AVGMDKITMKTVFAKAGLPQVKYMTLSRGQIWSNPCIFPKLCDEIEETLNYPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L Q++S++    +        +E       +    V      
Sbjct: 186 GSSVGIAKVRSRSELEKALDQAASYDRRIIVEAGVIAREVECAVLGNDNPKASVVGEITF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +  ++PA +P  I  ++Q ++  A  A+   G++R DF +   + 
Sbjct: 246 NSDFYDYETKYTDGRAQLLIPASVPDSIMTQIQEMSLAAFAAVDAAGLARVDFFYVEKTG 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++   EIN  PG T  S++P++ A  G SF +L+  ++E A
Sbjct: 306 EILINEINTLPGFTAFSMYPQLWAATGISFPQLVDRLIELA 346


>gi|121602474|ref|YP_989225.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
 gi|166198473|sp|A1UTC2|DDL_BARBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|47779265|gb|AAT38533.1| DdlB [Bartonella bacilliformis]
 gi|120614651|gb|ABM45252.1| D-alanine--D-alanine ligase [Bartonella bacilliformis KC583]
          Length = 306

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 140/283 (49%), Positives = 203/283 (71%), Gaps = 1/283 (0%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           G ACA  LE  G+ V ++DVD  +  VL  L+P   FN LHG FGEDG +Q ILE L+IP
Sbjct: 24  GTACADILEAQGYNVVRVDVDDRIVSVLEELRPTTVFNALHGPFGEDGCIQGILEYLKIP 83

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YTHSG++ASAL+MDK R+K + +S GV V PS +++RF++ ++H + PPYVIKP++ GSS
Sbjct: 84  YTHSGVMASALAMDKGRAKIIAASAGVSVAPSCVMSRFSLGAEHPMKPPYVIKPIREGSS 143

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KS 197
            G++++  D+++PL  + ++ W + D++++E+YV G ELTC V+GD  LDV EI      
Sbjct: 144 FGVVIVGSDETMPLHDIMNNEWVYDDEIMVEKYVPGRELTCAVLGDEVLDVCEIVPKECF 203

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY S  S H+ PAK+  +IY+ VQR++  AHQAIGCRG+SRSDF F+  + ++
Sbjct: 204 QFYDYDSKYKSGGSLHICPAKLSSNIYQNVQRMSLAAHQAIGCRGVSRSDFRFNEETGEL 263

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            WLEIN QPGMT  S+ P++A  +G ++ +++ W+VEDASC+R
Sbjct: 264 IWLEINTQPGMTSTSLVPDIAKASGRTYGDIVKWIVEDASCMR 306


>gi|291547309|emb|CBL20417.1| D-alanine--D-alanine ligase [Ruminococcus sp. SR1/5]
          Length = 371

 Score =  179 bits (453), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 153/340 (45%), Gaps = 50/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRS----- 41
           + VL GG S+ERE+S+ +G     AL   G     +D+              D+      
Sbjct: 28  IVVLAGGTSTEREISIVTGTGVCKALRKKGHNAILVDIFCGLEPVDWDEPFGDKDYEVDS 87

Query: 42  -------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                      +  +K                  D+ F  LHG+ GEDG VQA  +LL I
Sbjct: 88  AAEYMRSFDDDIEEIKRTRRSFFGPNVLELCQAADIVFMGLHGSNGEDGKVQATFDLLGI 147

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLK 134
            YT +G L+SAL+MDK  +K++     VP    + + +           +  P V+K   
Sbjct: 148 RYTGTGYLSSALAMDKGLTKKIFLMDQVPTPKGVSMLKENCTRNIHDLGMEFPVVVKTCC 207

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++   +     +  +   ++ D++++E+Y+ G E +  V+   +        
Sbjct: 208 GGSSVGVYIVNNQKEYEDAIDGAY--SYEDEVVVEEYIRGREFSVAVVDGKAY-PIIEIA 264

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK  FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G +R DF+    +
Sbjct: 265 PKQGFYDYKNKYQAGSTVETCPAEISPELTEKMQHYAEAGAKALCIEGYARFDFMM-KEN 323

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ LE N  PGMTP S+ P+ A   G  + +L   ++ 
Sbjct: 324 GDMYCLEANTLPGMTPTSLIPQEAKVLGIDYPDLCEELIR 363


>gi|322513885|ref|ZP_08066964.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
 gi|322120284|gb|EFX92231.1| D-alanine-D-alanine ligase B [Actinobacillus ureae ATCC 25976]
          Length = 303

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTKALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTAEMVVVRRGEAVD 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +      +  P  +KP   GSS+G+   K  + +   +    +      +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKAKTVEQLLPAI--EEALKFDSIVLVEAFLTGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L   ++  P  +FY Y  KY S N+ +V+P  +  +   EV +L  +A+ 
Sbjct: 186 YSVPVLDGQVLPAVQVI-PDGEFYDYHAKYVSDNTQYVVP-ALTDERQAEVAKLVKVAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|325915633|ref|ZP_08177941.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325538193|gb|EGD09881.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 318

 Score =  179 bits (453), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 155/302 (51%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLDALRARGVDAQPVDGIPALAQALVAGQFDRVFNVLHG 78

Query: 61  NFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           + G  EDG+VQ ++E   IPYT S +L SALSMDK+R+KQV  S G+P            
Sbjct: 79  HNGGGEDGIVQGLMEAFGIPYTGSNVLGSALSMDKIRTKQVWLSLGLPTPRYARLAAGVS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+GI  +     +   +L ++   +   LL+EQ ++
Sbjct: 139 ADEIHAAARQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVLLAA--RYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++G+ +L      VPK  +Y Y  KY + ++ ++ P        +  Q     
Sbjct: 197 GDELTVAILGETALPSI-RIVPKGQWYDYNAKYLADDTQYLCPGLDGDAEAQIGQLALDA 255

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +A G R   R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++
Sbjct: 256 F-RAAGARDWGRVDVMRDRSSGQLYLLEVNTAPGMTSHSLVPKAARQLGLDFEELVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|167614186|gb|ABZ89692.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 305

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 158/303 (52%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +G     +D      + L     D A+  LHG
Sbjct: 4   IAVLLGGNSSERQISIKSGYAILESLLRSGLNAYPVDTRDFPIIQLKKQGFDSAYIALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111
             GEDG +Q +LE L IPYT SGI++SA+S+DK R+K +  S  +P            S 
Sbjct: 64  KGGEDGSIQGVLEYLNIPYTGSGIMSSAISLDKWRTKLLWKSSSLPVLPDVYLKKKDISQ 123

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P VIKP   GSS+GI ++     +   +  + +++    ++IE++
Sbjct: 124 YTYPSILKKILQLKFPVVIKPNNSGSSIGITIVHYQDLLIDSINAAFNYSSD--IIIEKF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ++G E T  ++    L      + K+ FY Y  KY   ++ ++ P+++     KE++ +A
Sbjct: 182 IEGREYTVSILNKKILPPV-KIITKNHFYDYRAKYIESSTEYLCPSELHHQKEKELKNIA 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A + +GC+G  R D + D    K + LE+N  PGMT  S+ P  A   G SF EL+L 
Sbjct: 241 ETAWRTLGCKGCGRIDVILD-NKNKFWLLEVNTIPGMTYRSLVPISAKSIGISFDELVLK 299

Query: 292 MVE 294
           +++
Sbjct: 300 ILK 302


>gi|298241042|ref|ZP_06964849.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554096|gb|EFH87960.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 382

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/356 (23%), Positives = 153/356 (42%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL+S  +  + L+   ++V  I + ++   +L              
Sbjct: 15  IGLIFGGRSGEHEVSLASANSVMANLDKDKYEVILIGITKTGAWLLGTDPTRLLASPDAQ 74

Query: 47  -----------------------------------AHLKPDLAFNVLHGNFGEDGLVQAI 71
                                               +   D+ F V+HG +GEDG +Q +
Sbjct: 75  PNSAQSDQQATTAVTLTGDPNVRRLIPLQNGTQLHDNGALDVIFPVMHGTYGEDGALQGL 134

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------H 122
           LE+  +PY   G+L SAL MDK + K +  +  +PV P +  +R                
Sbjct: 135 LEMANVPYVGCGVLGSALGMDKEKMKMLFQAIHLPVLPFLAYHRKQWKQAPETILLAVEQ 194

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181
            +  P ++KP   GSS+G+      Q++   + Q+    +  +++IE+++D  EL+C V 
Sbjct: 195 ELGYPCIVKPANMGSSIGVSKAADRQTLEQAIAQAG--EYDTKIIIERWLDVRELSCAVL 252

Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +    +    V +     Y+ KY        +PA IP  + KEV  ++  A   +  
Sbjct: 253 GNEEPKTSLIGELVTEMTLLDYDAKYLHPGFHFDVPATIPGPLAKEVFHMSTQAFLVLDL 312

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DF  D    +++  E+N  P  T  S++P++ + +   + +LL  ++E A
Sbjct: 313 SGLARVDFFLDRNDGRIYINEVNTMPDFTQDSVYPKLWSASNLPYPKLLDRLIELA 368


>gi|225028154|ref|ZP_03717346.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
 gi|224954466|gb|EEG35675.1| hypothetical protein EUBHAL_02426 [Eubacterium hallii DSM 3353]
          Length = 353

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 99/344 (28%), Positives = 156/344 (45%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VLMGG SSE +VSL S K     ++   + V  + + +     L              
Sbjct: 6   IVVLMGGKSSEHDVSLVSAKTVIENIDKDLYNVIMVGITKDGQWKLVDRLDHLEDGSWVN 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  SKTSAYICPDTGRKELLLERDGKVDRISIDVVFPVLHGMNGEDGTVQGLLELAAIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLK 134
           G+LASA SMDK  +K VV S GV     + V R  +     +          P  +KP K
Sbjct: 126 GVLASACSMDKFYTKIVVDSIGVRQAKFVGVRRHELTHMDEVVARVEAGVPYPVFVKPSK 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS G+   +  + +   L  ++   H  ++L+E+ + G E+ CGV  M +        
Sbjct: 186 AGSSQGVSKAENREELIDALNLAA--KHDSKILVEETIVGREIECGVLGMNEPKASGVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   +FYSY+ KY++  S  V+  ++P    +E+++ A    +A+ C G+SR DF    
Sbjct: 244 VLSAEEFYSYDAKYNNEESRTVVDPELPEGKAEEIRKDAVAIFKALDCSGLSRVDFFLTK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V + EIN  PG T +S++P +    G S + L+  +++ A
Sbjct: 304 DTNEVVFNEINTLPGFTAISMYPMLWEARGLSKKALVQKLIDLA 347


>gi|209527619|ref|ZP_03276119.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
 gi|209491968|gb|EDZ92323.1| D-alanine/D-alanine ligase [Arthrospira maxima CS-328]
          Length = 358

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 105/344 (30%), Positives = 163/344 (47%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           +A+L GG S E EVS++S KA A+AL      + ++V  I ++++           VL  
Sbjct: 6   VALLFGGCSGEHEVSITSAKAIANALSIDPNPSKYEVVPIYIEKNGVWHRGTEAEAVLES 65

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +P                      DL F +LHG  GEDG VQ +L L+++PY  SG+L 
Sbjct: 66  GQPLTVTGEVIPSDRIPDPATVKDIDLWFPILHGPNGEDGTVQGMLTLMQVPYVGSGVLG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLK 134
           SA+ MDK+  K   S  G+P      V R  + S   I              P  +KP  
Sbjct: 126 SAVGMDKIAMKMAFSQAGIPQVRYQAVRRSQVWSNPCIFPKLCDDLDAALGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI  ++  Q   L+    ++  +  ++++E  V+  EL C V         V   
Sbjct: 186 LGSSVGISKVRSRQ--ELEAALDAAATYDRRIIVEAGVEARELECAVLGNDYPKASVVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               SDFY YE KY+   +  ++PA I   I  +V+ +A  A  A+   G++R DF +  
Sbjct: 244 ISYNSDFYDYETKYTDGKANLMIPAPIDTAIASKVRDMAIEAFLAVDAAGLARVDFFYIE 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V   EIN  PG T +S++P++ +  G SF EL+  ++E A
Sbjct: 304 KTGEVLLNEINTLPGFTALSMYPQLWSATGISFPELVNQLIELA 347


>gi|169634769|ref|YP_001708505.1| D-alanine--D-alanine ligase [Acinetobacter baumannii SDF]
 gi|229485850|sp|B0VNZ7|DDL_ACIBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169153561|emb|CAP02733.1| D-alanine-D-alanine ligase B [Acinetobacter baumannii]
          Length = 308

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 103/299 (34%), Positives = 155/299 (51%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL+GG S+ER VSL SG+A   AL  +G +    D  DRSV  ++     D AF VLH
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117
           G  GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P   I      
Sbjct: 67  GRGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDL 126

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P +IKP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E 
Sbjct: 127 DSVIAELGLPVIIKPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREF 184

Query: 178 TCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           T   +    L V  +  P    FY YE KY   +  + +P  +     K++Q L   A Q
Sbjct: 185 TISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQ 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+G  G  R D + D      + LE+N  PGMT  S+ P+     GYSF EL + ++E 
Sbjct: 245 AVGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKATKAVGYSFDELCVAILEQ 302


>gi|134294649|ref|YP_001118384.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
 gi|190359124|sp|A4JB96|DDL_BURVG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|134137806|gb|ABO53549.1| D-alanine--D-alanine ligase [Burkholderia vietnamiensis G4]
          Length = 313

 Score =  178 bits (452), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 149/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHLFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P     E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAAQEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSIGISYSELVVKVL 307


>gi|74316140|ref|YP_313880.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
 gi|123612472|sp|Q3SMH0|DDL_THIDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|74055635|gb|AAZ96075.1| D-alanine--D-alanine ligase [Thiobacillus denitrificans ATCC 25259]
          Length = 310

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 99/298 (33%), Positives = 155/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+ER VSL+SG A  +AL   G      D        L   + D  F  LHG
Sbjct: 13  VAVMLGGTSAERPVSLNSGNAVLAALTRQGIDAHAFDPATRSLGDLMSGEFDRVFIALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
            +GEDG +Q  LELL IPYT SG++ASA+ MDK R+K +  + G+P     +        
Sbjct: 73  RYGEDGCMQGALELLGIPYTGSGVMASAVGMDKWRTKLLWRAAGLPTADWAMLDATSDFA 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            ++  +  P  +KP + GSS+G+  + +  ++        +  H   +L E+++DG E T
Sbjct: 133 ATEARLGLPIFVKPAREGSSIGMSKVTEAGTLQAAY--EKAAEHDALVLAEKFIDGAEFT 190

Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            G++GD++L +       +  FY +E KY   ++ +  PA +P      +++LA  A + 
Sbjct: 191 VGIVGDSALPLIRLQPAAEKAFYDFEAKYLRDDTQYHCPAGLPDAQEMSLRKLALDAFRL 250

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G RG  R D + D L    + LE+N  PGMT  S+ P  A  AG  F  L + ++E 
Sbjct: 251 LGGRGWGRVDLMTDRLGN-PYLLEVNTSPGMTDHSLVPMAARVAGIDFDALCVTILEQ 307


>gi|170757719|ref|YP_001780107.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
 gi|229463744|sp|B1IEG9|DDL_CLOBK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169122931|gb|ACA46767.1| D-alanine--D-alanine ligase [Clostridium botulinum B1 str. Okra]
          Length = 300

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V       
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSAENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|163868710|ref|YP_001609922.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
 gi|189083032|sp|A9IWA2|DDL_BART1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161018369|emb|CAK01927.1| D-alanine--D-alanine ligase [Bartonella tribocorum CIP 105476]
          Length = 306

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 141/311 (45%), Positives = 207/311 (66%), Gaps = 21/311 (6%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA  LE+ G++VS++DV   +  VL  L+
Sbjct: 6   IAVLMGGFSSERSISLSS----------GAACADVLEEQGYRVSRVDVGAHIASVLEQLQ 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+AFN LHG FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + ++ GV V PS
Sbjct: 56  PDIAFNALHGPFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAANAGVCVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++NRF++   H + PPYVIKP+  GSS G++++++++++P   +  S W + D++++E+
Sbjct: 116 RIMNRFSIGKTHPMEPPYVIKPVCEGSSFGVVIVQENEAVPPHNIGGSEWGYADEVMVEK 175

Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G ELTC V   +       +      FY Y+ KY +  S H+ PAK+ L+IY+ VQR
Sbjct: 176 YIPGRELTCAVLGNEVLDVCEILPDQHFAFYDYDSKYKTGGSLHICPAKLSLNIYQSVQR 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++  AHQAIGCRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++
Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIV 295

Query: 290 LWMVEDASCLR 300
            WMVEDASC+R
Sbjct: 296 QWMVEDASCMR 306


>gi|240949725|ref|ZP_04754057.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
 gi|240295757|gb|EER46444.1| D-alanine--D-alanine ligase [Actinobacillus minor NM305]
          Length = 303

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 163/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID+       L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDIKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R    +
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              I      P  +KP   GSS+G+  +K  + +   +    +  +   +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P  +FY Y  KY S N+ +V+PA    D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|148378455|ref|YP_001252996.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           3502]
 gi|153932745|ref|YP_001382844.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|153937340|ref|YP_001386411.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|168177798|ref|ZP_02612462.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226947688|ref|YP_002802779.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
 gi|166198478|sp|A7FPH8|DDL_CLOB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198479|sp|A5HYZ6|DDL_CLOBH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767724|sp|C1FSC4|DDL_CLOBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148287939|emb|CAL82005.1| D-alanine--d-alanine ligase B [Clostridium botulinum A str. ATCC
           3502]
 gi|152928789|gb|ABS34289.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. ATCC
           19397]
 gi|152933254|gb|ABS38753.1| D-alanine--D-alanine ligase [Clostridium botulinum A str. Hall]
 gi|182670658|gb|EDT82632.1| D-alanine--D-alanine ligase [Clostridium botulinum NCTC 2916]
 gi|226843805|gb|ACO86471.1| D-alanine--D-alanine ligase [Clostridium botulinum A2 str. Kyoto]
          Length = 300

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|304386681|ref|ZP_07368962.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
 gi|304339234|gb|EFM05313.1| D-alanine-D-alanine ligase B [Neisseria meningitidis ATCC 13091]
          Length = 343

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 46  VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 105

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 106 TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 165

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +
Sbjct: 166 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 223

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 224 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 283 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 340


>gi|315925513|ref|ZP_07921723.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
 gi|315621054|gb|EFV01025.1| D-alanine-D-alanine ligase [Pseudoramibacter alactolyticus ATCC
           23263]
          Length = 353

 Score =  178 bits (452), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 149/338 (44%), Gaps = 44/338 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            V+ GG S E EV+  S      A++   + V+ I + +    ++               
Sbjct: 8   GVVFGGQSGEHEVARVSAYNVLQAVDRTKYDVTTIGITKDGRWLIYTGDWDKLPDGSWQE 67

Query: 47  ---------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                          A    D+ F ++HG  GEDG +Q + E++  PY   G+LASA+ M
Sbjct: 68  DTGHLREDFSLLTDPAIRAIDVFFPIMHGPMGEDGTIQGVFEMMGKPYVGCGVLASAVGM 127

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIV 143
           DK+ SK +    G+PV P    +                 +  P  IKP+  GSS+GI  
Sbjct: 128 DKVVSKILFEKAGIPVVPYRAFHAADWQRDQAVQITSAETLGYPLFIKPVNMGSSVGITK 187

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFY 200
                 +   + Q+   N+  ++L+E ++D  E+ C V+ +     T      V   +FY
Sbjct: 188 AHDRAELIAGVHQAL--NYDSKILVETFIDAREIECAVLEEQGHIQTTLPGEVVASKEFY 245

Query: 201 SYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            YE KY    +S   +PA+I      +++  A  A  AI   G+SR DF  D    +++ 
Sbjct: 246 DYEAKYADDQDSKIEIPAQIDDATTAQIRDFAAKAFAAIDGSGLSRVDFFVDNRDGRLYI 305

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            E+N  PG T +S++P M  + G S+ EL+  ++  A+
Sbjct: 306 NEVNTLPGFTDISMYPMMWQHMGVSYAELVERLIATAA 343


>gi|170761380|ref|YP_001785794.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
 gi|229463745|sp|B1KV16|DDL_CLOBM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169408369|gb|ACA56780.1| D-alanine--D-alanine ligase [Clostridium botulinum A3 str. Loch
           Maree]
          Length = 300

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     + V       
Sbjct: 63  KFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVTNAEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KEGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|15676336|ref|NP_273472.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254805544|ref|YP_003083765.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|22095567|sp|Q9K0Y0|DDL_NEIMB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|7225647|gb|AAF40862.1| D-alanine--D-alanine ligase [Neisseria meningitidis MC58]
 gi|254669086|emb|CBA07635.1| D-alanine--D-alanine ligase [Neisseria meningitidis alpha14]
 gi|254673373|emb|CBA08642.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha275]
 gi|261391938|emb|CAX49400.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase;
           D-Ala-D-Ala ligase) [Neisseria meningitidis 8013]
 gi|316984934|gb|EFV63890.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325136991|gb|EGC59588.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M0579]
 gi|325140939|gb|EGC63446.1| D-alanine--D-alanine ligase B [Neisseria meningitidis CU385]
 gi|325142978|gb|EGC65335.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 961-5945]
 gi|325144963|gb|EGC67246.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240013]
 gi|325198893|gb|ADY94349.1| D-alanine--D-alanine ligase B [Neisseria meningitidis G2136]
 gi|325199612|gb|ADY95067.1| D-alanine--D-alanine ligase B [Neisseria meningitidis H44/76]
 gi|325202765|gb|ADY98219.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M01-240149]
 gi|325205493|gb|ADZ00946.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M04-240196]
 gi|325208761|gb|ADZ04213.1| D-alanine--D-alanine ligase B [Neisseria meningitidis NZ-05/33]
          Length = 304

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|262197342|ref|YP_003268551.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262080689|gb|ACY16658.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 333

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 98/300 (32%), Positives = 166/300 (55%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG+SSE+ +SL++G A  ++LED G+ V +I VDR V + L     D+AF  LHG
Sbjct: 6   IGVLMGGLSSEKAISLATGDAVMASLEDRGYDVQKIFVDRDVDMALRQANIDVAFIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRF 116
            FGEDG +Q +LE + IPYT SG++ASAL+M+K +SK++     +P         +    
Sbjct: 66  RFGEDGCIQGLLETMGIPYTGSGVMASALAMNKAKSKEMFRLHNLPTPSYYVLNRVDEHD 125

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +        P V+KPL  GSS+G+ +    + +        ++     +++E++V+G+E
Sbjct: 126 VLGCHGDFGYPVVVKPLTEGSSVGVSLASTPEELLAA--CERAFVFDHSVVVERFVEGME 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++  V+ D +L        +   + Y  KY+S  + +++P ++  + Y+ V   A  AH 
Sbjct: 184 VSVAVLEDRALGAV-EVASEGPLFDYGAKYTSGATEYIIPPRLSPERYRGVLTQAVRAHL 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G SR D +  P   + + LE+N  P + P S+ P++A  AG  F +L+  ++  A
Sbjct: 243 ALDCSGASRVDMIVSPTGNE-YILEVNTLPALAPRSLLPKIAVAAGMDFDDLVEAILLGA 301


>gi|89894325|ref|YP_517812.1| hypothetical protein DSY1579 [Desulfitobacterium hafniense Y51]
 gi|89333773|dbj|BAE83368.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 361

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 98/344 (28%), Positives = 158/344 (45%), Gaps = 52/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S E EVSL+S  +   A++   +++  I + ++                   
Sbjct: 6   IIILFGGQSGEHEVSLNSASSVLKAIDQEKYEIETIGIAKNGQWHWGIRPEQWQQDPALE 65

Query: 45  ----VLAHL------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
               +LAH                   K  L F VLHG FGEDG +Q + E+  IPY  S
Sbjct: 66  GIPVILAHDPTNPRFIALDGSSLPQDGKFALIFPVLHGPFGEDGTIQGLFEMANIPYAGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPL 133
           G+L SAL MDK R K V +  G+P  P I          + +   + +H +  P  +KP 
Sbjct: 126 GVLGSALGMDKDRMKAVFTEAGLPQAPYITVLRTMLQKPMEQLLDNIEHSLGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +   L    +  +  +L++EQ + G E+        DA   +  
Sbjct: 186 NLGSSVGISKARNKEELIQAL--QLAAEYDRKLVVEQNIVGREIELSVLGNEDAQASIPG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +P  DFY YE KY    S  V+PA +  ++ + +Q  A  A +A+   G+SR DF   
Sbjct: 244 EILPAKDFYDYEAKYIDTGSQLVIPAPLAPEVVRSLQEKAVAAFKAVEACGLSRVDFFVT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +++  EIN  PG T +S++P++   +G  + EL+  ++E 
Sbjct: 304 E-GSQIYINEINTMPGFTQISMYPKLWEASGIPYTELITRLIEL 346


>gi|222096144|ref|YP_002530201.1| d-alanine--d-alanine ligase [Bacillus cereus Q1]
 gi|221240202|gb|ACM12912.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 304

 Score =  178 bits (451), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|172039648|ref|YP_001806149.1| D-alanyl-alanine synthetase A [Cyanothece sp. ATCC 51142]
 gi|171701102|gb|ACB54083.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 351

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 149/341 (43%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV--------LAH 48
           + +L GG S E EVS++S  A A AL        + +  I + ++   V        L  
Sbjct: 8   VGLLFGGRSGEHEVSINSAAAIAQALQTGDNANKYDILPIYIQKNGVWVAGDTANEVLDS 67

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
             P                     ++ F VLHG  GEDG +Q +L L+++P+  SG+L S
Sbjct: 68  KAPLATEETNPSQLWQFPTQVQEVEVWFPVLHGPNGEDGTLQGLLTLMQVPFVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135
           A+ MDK+  K   +  G+P      V R  + S   I              P  +KP   
Sbjct: 128 AVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++S++    +        +E       +    V      
Sbjct: 188 GSSVGIAKVRSHSELETALDSAASYDRRIVIEAGVNARELECAVLGNDNPKASVIGEVTF 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           + DFY YE KY+   S   +PA +P  I  ++Q +A  A + +   G++R DF +   + 
Sbjct: 248 EGDFYDYETKYTEGRSQIHIPANLPEKIVSQIQEMAIQAFKTVDAAGLARVDFFYVEETE 307

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  EIN  PG T  S++P++    G +F +L+  +V+ A
Sbjct: 308 EIYINEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 348


>gi|240850889|ref|YP_002972289.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
 gi|240268012|gb|ACS51600.1| D-alanine--D-alanine ligase [Bartonella grahamii as4aup]
          Length = 306

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 141/311 (45%), Positives = 206/311 (66%), Gaps = 21/311 (6%)

Query: 1   MAVLMGGI----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG                     G ACA  LE  G++VS++DVD  +  VL  L+
Sbjct: 6   IAVLMGGFSSERSVSLSS----------GAACADVLEVQGYRVSRVDVDAHIASVLEQLQ 55

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           PD+AFN LHG FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K +V++ GV V PS
Sbjct: 56  PDIAFNALHGPFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIVANVGVCVAPS 115

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +++RF +   H + PPYVIKP+  GSS G+++++++++ P   +  + W + D+++IE+
Sbjct: 116 RIMSRFALGQTHPMEPPYVIKPVCEGSSFGVVIVQENEAAPPHSIGGAEWGYADEVMIEK 175

Query: 171 YVDGIELTCGV-MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Y+ G ELTC V   +       +      FY Y+ KY +  S H+ PA++ L+IY+ VQR
Sbjct: 176 YIPGRELTCAVLGNEVLDVCEILPDKHFPFYDYDSKYKTGGSLHICPAQLSLNIYQSVQR 235

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           ++  AHQAIGCRG+SRSDF FD  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++
Sbjct: 236 MSLAAHQAIGCRGVSRSDFRFDEKTGELVWLEINTQPGMTSTSLLPDIAKASGRTYGDIV 295

Query: 290 LWMVEDASCLR 300
            WMVEDASC+R
Sbjct: 296 QWMVEDASCMR 306


>gi|121611481|ref|YP_999288.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
 gi|190359218|sp|A1WRL3|DDL_VEREI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121556121|gb|ABM60270.1| D-alanine--D-alanine ligase [Verminephrobacter eiseniae EF01-2]
          Length = 331

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 101/306 (33%), Positives = 153/306 (50%), Gaps = 9/306 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG+S+EREVSL SG     AL          D  +     L        F  LHG
Sbjct: 16  VAVLMGGVSAEREVSLLSGAGVLRALRARAVDAHAFDTAQGDLGALKREGYARCFIALHG 75

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GEDG VQ  LELL I YT SG++AS++++DK  SK++  S G+P      +       
Sbjct: 76  RHGEDGTVQGALELLGIAYTGSGVMASSMALDKTMSKRIWRSEGLPTPDWRLVTSGAEAG 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP + GS++G+  + + Q      L ++   +  ++L EQ++ G ELT
Sbjct: 136 QALQTLGAPMIVKPAREGSTIGLSKVHQAQQCASAYLLAA--RYDPEVLCEQFIAGDELT 193

Query: 179 CGVMGDASLDVTE-----IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           C V+        +       V     Y Y+ KY S  + +  P+ +P    + + RLA  
Sbjct: 194 CTVLDQGRRASAQALPLIRIVAPDGNYDYQHKYFSDATRYHCPSGLPEAQERAIGRLAEQ 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+GCRG +R+D +     ++ F LEIN  PGMT  S+ P  A  AG S+ +L L ++
Sbjct: 254 AFSALGCRGWARADIMLRASDQQPFLLEINTAPGMTDHSLVPMSARAAGISYEDLCLRLL 313

Query: 294 EDASCL 299
             A+  
Sbjct: 314 AMATLD 319


>gi|226953385|ref|ZP_03823849.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|294651908|ref|ZP_06729198.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
 gi|226835862|gb|EEH68245.1| D-alanine-D-alanine ligase [Acinetobacter sp. ATCC 27244]
 gi|292822231|gb|EFF81144.1| D-alanine-D-alanine ligase [Acinetobacter haemolyticus ATCC 19194]
          Length = 308

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 100/298 (33%), Positives = 151/298 (50%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L     D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLEALLRSGVQAEAFDPQERSVTELVA--YDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  ++ + T   
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKDTDLD 127

Query: 121 QHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +  +  P +IKP+  GSS+G+  ++K +        + +  H   ++ E+++ G E T
Sbjct: 128 AVIADLGLPVIIKPVHEGSSVGMSKVEKTEDFAA--AIAKATAHDAVVMAEKWITGREFT 185

Query: 179 CGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +    L V  +  P    FY YE KY   +  + +P  +     K +Q L   A QA
Sbjct: 186 ISFLNGQPLPVIRLQPPADVAFYDYEAKYQRNDVEYGIPCGLSEAEEKTLQALCLRAFQA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G  R D + D      + LE+N  PGMT  S+ P+ A   GYSF  L + ++E 
Sbjct: 246 VGAEGWGRIDAMQDEQGN-FWLLEVNTVPGMTSHSLVPKAAQAVGYSFDALCVAILEQ 302


>gi|206973874|ref|ZP_03234792.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|206748030|gb|EDZ59419.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
          Length = 304

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLD 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|269118899|ref|YP_003307076.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
 gi|268612777|gb|ACZ07145.1| D-alanine/D-alanine ligase [Sebaldella termitidis ATCC 33386]
          Length = 305

 Score =  178 bits (451), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 145/298 (48%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GGISSEREVSL SG+     L    + V  I ++    +  +    D  F  LHG
Sbjct: 6   IGVVRGGISSEREVSLKSGEGIIRELNKDKYDVKDIVLNDKNDIFTSLDGVDFVFLGLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116
            FGEDG +QAILE ++IPYT  G+LAS+L MDK  +K ++ S GV     I V       
Sbjct: 66  KFGEDGKIQAILETMDIPYTGCGVLASSLCMDKDITKHIMRSYGVRTAKWISVREGEECD 125

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             ++   +    + KP  GGSS+G+  IK +Q     L    +     +++IE+ + G+E
Sbjct: 126 YSEAAAYLGEDIIAKPNSGGSSVGVHFIKNEQEFYEALKDIFTI--DKEVMIEEVLRGVE 183

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           ++  ++         I      F+ Y      +        +   ++  E+  L   A+ 
Sbjct: 184 ISVPIIDGKVYPTLCIEPKAGTFFDY-ASKYEVGGADEYVVEFEKELQDEINELTKTAYH 242

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+ C G +R DF+      K + +EIN  PGMT  S+ P+   + G S+ ELL  ++E
Sbjct: 243 AVKCEGYARIDFML--KDNKPYLMEINTLPGMTMTSLVPKSLKHLGVSYSELLDKLIE 298


>gi|163846334|ref|YP_001634378.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222524098|ref|YP_002568569.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
 gi|163667623|gb|ABY33989.1| D-alanine--D-alanine ligase [Chloroflexus aurantiacus J-10-fl]
 gi|222447977|gb|ACM52243.1| D-alanine/D-alanine ligase [Chloroflexus sp. Y-400-fl]
          Length = 356

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 156/344 (45%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAHLKP 51
           +AV+ GG S E EVSL S  A  S L+ A +++  I + +             ++A   P
Sbjct: 7   VAVVFGGQSGEHEVSLVSAHAVMSNLDPARYQIEAIGIGKDGQWWHGPGALAKLMAEADP 66

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F VLHG +GEDG +Q +LEL   PY 
Sbjct: 67  ARLPASAAQVAAGPVHALGRVGAPGWELPAADVIFPVLHGPYGEDGTIQGLLELAGRPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132
             G+ ASA+ MDK   K   ++ G+PV P +LV R             +  +  P  +KP
Sbjct: 127 GCGVAASAVGMDKGLMKAAFAAAGLPVLPWVLVRRSELADESGLCARLEAALRYPMFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  ++    +   L +++ ++    +        IE++     +    +   
Sbjct: 187 ANLGSSVGVSKVRDRAELLAGLHEAARYDRRLIVEQGIPAREIEISVLGNDEVVASIPGE 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  ++Y Y  KY    S  ++PA +      +VQ LA  A QAI   G++R DFL D 
Sbjct: 247 IIPAGEWYDYHAKYIDGGSQTIVPADLSPAQITQVQELAMRAFQAIDGAGLARVDFLLDR 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++  E+N  PG TP+S++P+M A +G S+ +LL  +V+ A
Sbjct: 307 DQGTLWVNEVNTMPGFTPISMYPKMWAASGLSYAQLLDRLVDLA 350


>gi|307151246|ref|YP_003886630.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
 gi|306981474|gb|ADN13355.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7822]
          Length = 377

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 151/341 (44%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS++S KA A AL        +++  I + +            VL  
Sbjct: 32  VGLLFGGRSGEHEVSINSAKAIAKALSSETNATKYQLIPIYIRKDGCWQAPEIAQAVLES 91

Query: 49  LKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            KP                     D+ F +LHG  GEDG +Q +L L+++PY  SG+L S
Sbjct: 92  GKPLSTESDDSVGLWQFPPSVNEVDVWFPILHGPNGEDGTLQGLLTLMQVPYVGSGVLGS 151

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKG 135
           A+ MDK+  K      G+P  P + + R  +              +  +  P  +KP   
Sbjct: 152 AVGMDKIAMKTAFKQAGLPQVPYMTLTRAQIWSNSCVFPKLGDEIEQTLGYPCFVKPANL 211

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +    +   L  ++S++    +        +E       +    +      
Sbjct: 212 GSSVGIAKARTRSELETALDAAASYDRRIIVEAGVSAREVECAVLGNDNPKASIVGEITF 271

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   +  ++PA IP  I  ++Q ++  A  A+   G++R DF +   + 
Sbjct: 272 NSDFYDYETKYTDGRAQLLIPAPIPPQIAAQIQEMSLSAFAAVDAAGLARVDFFYVEKTG 331

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   EIN  PG T  S++P++   +G  F +L+  +++ A
Sbjct: 332 EVLINEINTLPGFTAFSMYPQLWEASGIQFPQLVDQLIQLA 372


>gi|206561797|ref|YP_002232562.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia J2315]
 gi|229463735|sp|B4E6J0|DDL_BURCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|198037839|emb|CAR53783.1| D-alanine--D-alanine ligase B [Burkholderia cenocepacia J2315]
          Length = 313

 Score =  178 bits (451), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 145/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L      +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALEEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P     E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|332298509|ref|YP_004440431.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
 gi|332181612|gb|AEE17300.1| D-alanine--D-alanine ligase [Treponema brennaborense DSM 12168]
          Length = 373

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/355 (26%), Positives = 155/355 (43%), Gaps = 64/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E EVSL S  +    +  A   +  I + +S    L +            
Sbjct: 3   IAVIYGGKSGEHEVSLVSAASIVRNINTAKHDIILIGIAKSGKWFLQNETECERVRADAH 62

Query: 50  -------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F+VLHG +GEDG +Q +L++  IP
Sbjct: 63  AALTVAEDADALVSIVPGGGTEGLRTKKGTLPVDVVFSVLHGTYGEDGTIQGLLDMTGIP 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-------------TMDSQHLIS 125
           YT     +SAL+MDK ++KQ+     +PV P + + +                 ++    
Sbjct: 123 YTGCSTASSALTMDKEKTKQIWRESRLPVLPHVCLKQRDRVNGNGESLQKLMRQAETEFG 182

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD- 184
            P  +KP   GSS+G   + K+  +   + ++  W   D++LIE  +D  E+ C V G+ 
Sbjct: 183 YPLFVKPCGTGSSVGASKVSKETELEAAVAEAFRW--DDKILIEPAIDAREIECSVTGNS 240

Query: 185 -----ASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAI 238
                 +        P   FY Y+ KY+  N     +PA +  +    V++ A  A++ +
Sbjct: 241 VSGGEVTAYTPGEIKPSHTFYDYDAKYTDPNGAKLCIPADLSAEQLDVVRKTAVKAYETL 300

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C G+SR DF  D  +  ++  EIN  PG T +S+FP+M   AG S+ +L+  ++
Sbjct: 301 DCSGLSRVDFFIDRKTGNLYLNEINTMPGFTSISMFPKMCEAAGLSYADLVELII 355


>gi|94986220|ref|YP_605584.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
 gi|166198483|sp|Q1IWG9|DDL_DEIGD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94556501|gb|ABF46415.1| D-alanine--D-alanine ligase [Deinococcus geothermalis DSM 11300]
          Length = 339

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 141/333 (42%), Gaps = 35/333 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E EVSL S ++  +AL    F V+ + +      +                 
Sbjct: 7   LLAGGQSEEHEVSLRSARSVLAALPRDQFDVTPVVISPQGRWLPPTDTQRALETGEAVRG 66

Query: 46  --------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS- 96
                    +    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ + 
Sbjct: 67  GDLVLHRAASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 97  -------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                     V+             +        +  P  +KP   GSS+GI  +     
Sbjct: 127 QVLASVGMPQVAWRLAVRREWQERPQEVRARAGELGYPLFVKPANLGSSVGISKVSGPGE 186

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207
           +   L  + S      L         EL  G+                ++DFY YE KY+
Sbjct: 187 LERALDLAFSLGRRVILEAMTAHKPRELEVGILGNDAPIASPVGELRFEADFYDYETKYT 246

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +T  +PA +P +I + V+ LA  A + + C G++R DF +   + ++F  E+N  PG
Sbjct: 247 EGRATMHIPAPLPPEIAERVRMLALTAFRTLDCAGLARVDFFYVEQTGELFLNEVNTMPG 306

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            T  S++P++   AG S+ EL+  +VE A   R
Sbjct: 307 FTTTSMYPKLFEAAGLSYSELVTRLVELALERR 339


>gi|322804734|emb|CBZ02286.1| D-alanine--D-alanine ligase [Clostridium botulinum H04402 065]
          Length = 300

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYSNINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|28210053|ref|NP_780997.1| D-alanyl-alanine synthetase A [Clostridium tetani E88]
 gi|39931118|sp|Q898Z5|DDLB_CLOTE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|28202488|gb|AAO34934.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 358

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 87/329 (26%), Positives = 152/329 (46%), Gaps = 36/329 (10%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------- 44
           + GG S+E EVS +S  +    +    +++  I + +                       
Sbjct: 26  VFGGQSTEHEVSRNSVTSILKNINRDKYEICPIGITKEGKWFQYTGDINNIKNGQWEKDN 85

Query: 45  ---------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                    VL + + +L F VLHG +GEDG +Q + +L+ +P    G+L+SAL MDK+ 
Sbjct: 86  KNKLENGYNVLFNKEVELVFPVLHGLYGEDGTIQGLCKLVGLPCVGPGVLSSALCMDKIY 145

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKD 147
           +K V+ +        ++VN+F  +            +     IKP   GSS+GI      
Sbjct: 146 TKYVLENFKFKQANYVVVNKFEYEKNKEEIIKEVEKLQYDVFIKPANSGSSVGITKAHNK 205

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +   L ++   +    +        IE+      D    V    +P  +FY YE KY 
Sbjct: 206 EELLKGLEEAFIHDKNVLVEEAINAREIEVAVLGNDDPKAAVPGEIIPAKEFYDYEAKYQ 265

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           + NS  ++PA I     +E++ LA   ++ +GC G++R DFL D  S +V++ E+N  PG
Sbjct: 266 NENSELLIPANIDNIKQEEIKELAIKIYKLLGCSGLARVDFLMDKESNEVYFNEVNTLPG 325

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            T +S++P++   +G S+  L+  ++E A
Sbjct: 326 FTKISMYPKLWEASGKSYSALIDELIELA 354


>gi|167564197|ref|ZP_02357113.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis EO147]
 gi|167571347|ref|ZP_02364221.1| D-alanine--D-alanine ligase B [Burkholderia oklahomensis C6786]
          Length = 312

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 91/299 (30%), Positives = 144/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLLGGESAERDVSLNSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFARAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    G+P  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGIPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L      +  H   +++E+ ++G
Sbjct: 132 ARAKDIVAKLGVPLFVKPASEGSSVAVLKVKSAD--ALPAALEEAAKHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +       ++R+A  A
Sbjct: 190 GGEYTACIAADLDLPLIKIVPAGEFYDYHAKYIADDTQYLIPCGLDAAKEAALKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGISYSELVVKVL 307


>gi|320105501|ref|YP_004181091.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
 gi|319924022|gb|ADV81097.1| D-alanine/D-alanine ligase [Terriglobus saanensis SP1PR4]
          Length = 375

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/348 (27%), Positives = 154/348 (44%), Gaps = 57/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S E EVSL S  +   A++   + V  I +++    +               
Sbjct: 7   VGILFGGRSGEHEVSLRSAASILDAIDRKKYDVVPIGINKQGKWLNGPDAQNLLGGETVK 66

Query: 46  ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 K D+ F VLHG FGEDG +Q + EL ++ Y  SG+L S
Sbjct: 67  QLAATAETGLSIHAAAAGTETSKLDVVFPVLHGTFGEDGTIQGLFELADVAYVGSGVLGS 126

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++  +P+   + + R              +  +  P  +KP   GSS
Sbjct: 127 AAGMDKDAMKRMFAASKLPMVKHVTLLRSEWAASKRKCTTQIEAALKYPLFVKPANLGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-------ELTCGVMGDASLDVTE 191
           +GI  +     +P  + +++      +++IEQ V G        E+           V  
Sbjct: 187 VGISKVHDRSELPKAMDEAA--RFDRKIVIEQGVGGKRGKARELEVAVLGNDTPEASVVG 244

Query: 192 IAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             VP  +FY Y  KY  +  S   +PAKI     K+++ +A  A +A  C G++R DFL 
Sbjct: 245 EIVPDREFYDYASKYDATSTSEPQIPAKITKAEAKQIREMAIRAFKACDCSGLARVDFLM 304

Query: 251 DPLSR-----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           DP S      K++  EIN  PG T +S++P++    G S+REL+  ++
Sbjct: 305 DPPSATGKPAKIYLNEINTMPGFTSISMYPKLWEATGVSYRELIDRLI 352


>gi|42781687|ref|NP_978934.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217960060|ref|YP_002338618.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|42737610|gb|AAS41542.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
 gi|217067100|gb|ACJ81350.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
          Length = 304

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|218768808|ref|YP_002343320.1| D-alanine--D-alanine ligase [Neisseria meningitidis Z2491]
 gi|22095566|sp|Q9JSZ9|DDL_NEIMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|121052816|emb|CAM09163.1| D-alanine--D-alanine ligase B [Neisseria meningitidis Z2491]
 gi|319411047|emb|CBY91447.1| D-alanine-D-alanine ligase (D-alanylalanine synthetase; D-Ala-D-Ala
           ligase) [Neisseria meningitidis WUE 2594]
          Length = 304

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 159/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +   +    +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHFQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVMGVGFADLCIEILKTA 301


>gi|254448997|ref|ZP_05062451.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
 gi|198261391|gb|EDY85682.1| D-alanine--D-alanine ligase [gamma proteobacterium HTCC5015]
          Length = 310

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 95/298 (31%), Positives = 153/298 (51%), Gaps = 7/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG ++EREVSL SG AC +ALE +  + + +D      L L+    D A NV+HG
Sbjct: 14  VVLLKGGWAAEREVSLVSGAACEAALERSNIEFTSVDASPEAILQLSAQNFDRALNVVHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTM 118
             GEDG +QA L L  IP + S +L SAL+MDK+R+K + +  G+P      +      +
Sbjct: 74  RGGEDGQLQAALSLAGIPCSGSDVLGSALAMDKLRTKYLWAGAGLPTPLYRQIGSVEEAL 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++KP   GSS+G+  +   + +      ++ +    ++  EQ++ G E T
Sbjct: 134 SVAEELGLPLMVKPALEGSSIGMSKVNDVEDMAAAYELAAQY---GEVFAEQWIVGKEYT 190

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD +L +  +     DFY Y  KY   ++ +  P  +     + +Q LA  A   +
Sbjct: 191 AAILGDETLPLVRLET-DQDFYDYAAKYERNDTRYHCPCGLDDTAERNLQHLAQQAFDTV 249

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G  G  R D + D    + + +E+N  PGMT  S+ P  A  AG SF EL+L ++  A
Sbjct: 250 GASGWGRVDLMVDEA-GQPWLIEVNTVPGMTDHSLVPMAAKQAGMSFDELVLRILMTA 306


>gi|310779638|ref|YP_003967971.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
 gi|309748961|gb|ADO83623.1| D-alanine--D-alanine ligase [Ilyobacter polytropus DSM 2926]
          Length = 284

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 102/295 (34%), Positives = 161/295 (54%), Gaps = 14/295 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSERE+SL +GKA   +L   G+    +D+    +       + DLA+  LH
Sbjct: 3   IAVFMGGVSSEREISLRTGKAILESLIRQGYDAYGVDLKEDNLLTAFTENEYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QA+L++++ PYT SG+  SA++MDK  +K       +     I + +   D
Sbjct: 63  GEFGEDGRIQAVLDIIKKPYTGSGVTPSAIAMDKNMTKI------IAEKAGIRIPKSYRD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +IS P V+KP   GSS+G+ +    + +            G  LLIE++V G ELT 
Sbjct: 117 KSEIISFPVVVKPTTEGSSVGLYICNSIEEVEKA----EKNLMGKSLLIEEFVSGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+            PKS  Y ++ KY+   + +  PAK+   +Y+E    +   HQ +G
Sbjct: 173 GVLNG-EPLGVLKISPKSGLYDFQSKYTVGMTEYEYPAKVSPKVYEEAMIFSKKIHQELG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G+SRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +L+  +++
Sbjct: 232 LSGVSRSDFIL--KDDKIYFLEVNTCPGMTETSLVPKLATLKGYTFDDLVKKIIQ 284


>gi|303251842|ref|ZP_07338013.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249143|ref|ZP_07531150.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649272|gb|EFL79457.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854431|gb|EFM86627.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 303

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 100/301 (33%), Positives = 159/301 (52%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  +  +P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVDLPTADMVVVRRGEAVD 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +      +  P  +KP   GSS+G+  +K  + +   +    +      +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAV--EEALKFDSIVLVEAFLAGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P+ +FY Y  KY S N+ +++P  +  D   EV  L   A++
Sbjct: 186 YSVPVLDGQVLPAV-QIIPEGEFYDYHAKYISDNTQYLVP-ALSDDRQAEVAELVKAAYE 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDA-NGNFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|228915195|ref|ZP_04078790.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844426|gb|EEM89482.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 304

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|282897252|ref|ZP_06305254.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
 gi|281197904|gb|EFA72798.1| D-alanine--D-alanine ligase [Raphidiopsis brookii D9]
          Length = 357

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/340 (25%), Positives = 149/340 (43%), Gaps = 44/340 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S  A A AL        +++    + +        +       
Sbjct: 6   VGLLFGGRSGEHEVSIVSAGAIAKALTTGENSQKYELYPFYIQKDGVWQGEEIARKVLES 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + DL F +LHG  GEDG +Q +L L+++P+  SG+L SA
Sbjct: 66  GSAQENNLTGVNLWQFPQQSPQIDLWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQHLISPPYVIKPLKGG 136
           + MDK+  K   +  G+P      V R  +              +  +  P  +KP   G
Sbjct: 126 MGMDKIAMKTAFAQAGLPQVQYQTVTRSQIWSNPCVFPKLCDQIETTLGYPCFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  ++  Q +   L  +++++    +        +E        A   V       
Sbjct: 186 SSVGIAKVRSRQQLETALDSAATYDRRIIVEAGVVAREVECAVLGNDHAQASVVGEITFN 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDFY YE KY+   +  ++PA +P  I +++Q ++  A  A+   G++R DF +   + +
Sbjct: 246 SDFYDYETKYTQGKANLLIPAPLPQTIVEQIQEMSLKAFAAVDAAGLARVDFFYVESTGE 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPQLVDQLIQLA 345


>gi|196043714|ref|ZP_03110952.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225864595|ref|YP_002749973.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|229184840|ref|ZP_04312032.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|196026023|gb|EDX64692.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|225787258|gb|ACO27475.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228598645|gb|EEK56273.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
          Length = 304

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 151/303 (49%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|332305227|ref|YP_004433078.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332172556|gb|AEE21810.1| D-alanine/D-alanine ligase [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 326

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 99/302 (32%), Positives = 153/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL SG+A  +AL  AG      D        L   K D    +LHG
Sbjct: 28  VAVMFGGRSAEREVSLRSGQAVLNALVGAGVNAHGFDPADRQLHELVEQKFDRVLIMLHG 87

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P              
Sbjct: 88  RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 147

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +    ++KP + GSS+G+  +     +   +    ++ + D++L+EQ++ G
Sbjct: 148 ANCGDIMTRLGDLVMVKPAQEGSSIGMAKVSNAHQLAAAI--QQAFEYDDKVLLEQFIQG 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   +L    ++ P+   Y YE KY S ++ +  P+ +  +   ++ +LA  A
Sbjct: 206 SEYTVSLLNGIALPSISMSTPRDF-YDYEAKYQSNSTEYFCPSGLSDEQETDLAQLALNA 264

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R DF+ D    + + LE N  PGMT  S+ P  A  AG SF +L L ++ 
Sbjct: 265 FDAVAGTGWGRIDFMQDAQ-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFAQLSLAVLA 323

Query: 295 DA 296
            A
Sbjct: 324 TA 325


>gi|187777544|ref|ZP_02994017.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
 gi|187774472|gb|EDU38274.1| hypothetical protein CLOSPO_01135 [Clostridium sporogenes ATCC
           15579]
          Length = 300

 Score =  178 bits (450), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 94/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKNKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KEGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLDLIVK 293


>gi|239994433|ref|ZP_04714957.1| D-alanine--D-alanine ligase [Alteromonas macleodii ATCC 27126]
          Length = 327

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G      D        L  L  D A  +LHG
Sbjct: 22  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVDAFAFDPAERPLTDLIDLNVDRALIMLHG 81

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114
             GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P              
Sbjct: 82  RGGEDGSMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++ + +Q+L+EQY+DG
Sbjct: 142 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAI--QDAFKYDNQVLLEQYIDG 199

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P +  Y Y  KY    + +  P+ +  +   ++ +LA  A
Sbjct: 200 PEFTVSVLQGQALPSIRMSTPHTF-YDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 258

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L ++ 
Sbjct: 259 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 317

Query: 295 DA 296
            +
Sbjct: 318 TS 319


>gi|237654082|ref|YP_002890396.1| D-alanine--D-alanine ligase [Thauera sp. MZ1T]
 gi|237625329|gb|ACR02019.1| D-alanine/D-alanine ligase [Thauera sp. MZ1T]
          Length = 304

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 102/298 (34%), Positives = 152/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  +AL+ AG      D       VL     + AF  LHG
Sbjct: 8   VAVLFGGSSAEREVSLMSGAAVLAALQAAGVDAHAFDPAERDLHVLKEEGFERAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LEL+ IPYT SG++ASALSMDK R+K V  S G+P     ++   +   
Sbjct: 68  RGGEDGTVQGALELMGIPYTGSGVMASALSMDKWRTKMVWLSAGLPTPRYAILEHDSDWD 127

Query: 121 QH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP+  GSS+G   + +   +        +  +   ++ E+++ G ELT
Sbjct: 128 AVVAELGLPIFVKPVHEGSSMGATKVVEAGQLRAA--WELAARYDRLVIAEEFICGAELT 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D +L +  I  P    Y Y+ KY + ++ +  P+ +P     E+Q +     + +
Sbjct: 186 APFLEDRALPLVRIVAP-GGNYDYQHKYFTDDTRYDCPSGLPAAQEAELQAMVMKCARVL 244

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCRG  R+D +      + + LE+N  PGMT  S+ P  A  AG  F  L L +++ A
Sbjct: 245 GCRGWGRADLILTE-DGRPYLLEMNTSPGMTGHSLVPMSARVAGLDFTALCLEILQGA 301


>gi|307297640|ref|ZP_07577446.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306916900|gb|EFN47282.1| D-alanine/D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 305

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 148/299 (49%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG SSER+VS+ SG   + +LE  G +V   D+ R     L  LK DL F  LHG
Sbjct: 5   IAVVYGGFSSERDVSVKSGSNISKSLERLGAEVIGFDLKRDRIASLLSLKADLFFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG VQ ++EL  +PYT S    SA+  DK  + ++V +                D 
Sbjct: 65  KFGEDGTVQGLMELAGLPYTSSDSRTSAVCFDKEITYRLVKAEVDLPLW--KKVISEKDL 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +     P VIKP + GSS+G+ +     ++          +  D LL+E+Y+DG E+T  
Sbjct: 123 EGWKIFPCVIKPTREGSSIGVFICDDASTLIN--RTRLLLDVYDSLLLEEYIDGREITVS 180

Query: 181 VMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++               PK  FY YE KY+   +  V+PA I     + +   +   ++ 
Sbjct: 181 IIDSREGIKVLPVLEIKPKRRFYDYEAKYTPGLTEFVVPAPIERSTLESIIEKSVAVYKL 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR  +R D +        ++LE+N  PGMT +S  P  A  AG +F +++L ++E A
Sbjct: 241 LGCRDFARVDGIL--KGGVFYFLEVNTIPGMTDLSDLPMSARAAGMTFDDVVLDIIEAA 297


>gi|303238402|ref|ZP_07324937.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
 gi|302594106|gb|EFL63819.1| D-alanine/D-alanine ligase [Acetivibrio cellulolyticus CD2]
          Length = 377

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 155/360 (43%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E EVS  S  +  + ++ + F VS + + +    V               
Sbjct: 7   VMVIFGGQSTEHEVSRFSATSIINNMDRSKFDVSFVGITKEGRWVPYNGPVEKIASGEWE 66

Query: 46  --------------------------------------LAHLKPDLAFNVLHGNFGEDGL 67
                                                 +     D+ F VLHG  GEDG 
Sbjct: 67  EIAINEMVKGIPYRDNIINAIVSRGASSEAVIKNENKEINGGPIDVVFPVLHGCNGEDGT 126

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------- 119
           +Q + E+  IPY  SG+L SAL MDK+ +K V    GVP    +   R  +         
Sbjct: 127 IQGLFEMAGIPYVGSGVLGSALGMDKIYAKIVFEKVGVPQAGYLFFTRKEIKENSDRVAD 186

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             +     P  IKP   GSS+G+      + +   L  ++   +  ++LIE++++G E+ 
Sbjct: 187 AIEQRFEYPVFIKPSNAGSSVGVSKAHDRRELVEALNFAA--KYDRKVLIEEFINGREVE 244

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           C V    +         +P ++FY Y  KY   +S  V+PA +P D   +++  A  A +
Sbjct: 245 CAVLGNDNPIASTVGEVIPCNEFYDYNAKYIDGSSKTVIPANLPADTILKIREYAVKAFK 304

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G+SR DF     + +++  EIN  PG T +S++P +   +G  + EL+  +++ A
Sbjct: 305 ALDCAGLSRVDFFVHKETGEIYINEINTLPGFTNISMYPMLWEASGIPYSELIERLIDLA 364


>gi|327475203|gb|AEA77196.1| D-alanyl-alanine synthetase A [Bacillus sp. 15.4]
          Length = 358

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 157/341 (46%), Gaps = 46/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLK-- 50
           + +L GG S+E +VSL + KA   AL++  + +  I +      V        + + K  
Sbjct: 5   ICLLYGGKSAEHQVSLQTAKAVIGALDNDKYDIHPIYISEEGQWVKGPQLQGPVENAKEL 64

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+   +LHG  GEDG VQ +LELL +PY  +G+
Sbjct: 65  AFTEGEAIAPNALSTTLSPEESEGGTFDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LASA  MDK+  K + +  G+P    +   + T          D +  +  P  +KP   
Sbjct: 125 LASAAGMDKVIMKNLYAQAGIPQVNYVWYLKKTWESDPEAAYLDVEKELGYPCFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI      + + L   ++  ++    +        IEL      +    V    +P
Sbjct: 185 GSSVGISKASSREELILAFKEAFQFDRKIIIEQGVKAREIELGVLGNDEPECSVPGEILP 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K DFY Y+ KY   ++  ++PA+IP  IY++++R+A  + +A+ C G+ R+DF       
Sbjct: 245 KKDFYDYKAKYEDGDTALIIPAEIPEHIYEDMKRIAVDSFKALDCSGLVRADFFLTE-DG 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++  E+N  PG TP S+FP +  ++G  + EL+  +V+ A
Sbjct: 304 GIYMNEVNTMPGFTPFSMFPLLWKHSGVEYPELIERLVQLA 344


>gi|229196783|ref|ZP_04323525.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228586691|gb|EEK44767.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
          Length = 304

 Score =  177 bits (449), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNVSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|229011881|ref|ZP_04169061.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|228749295|gb|EEL99140.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 304

 Score =  177 bits (449), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELTSMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|317052426|ref|YP_004113542.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
 gi|316947510|gb|ADU66986.1| D-alanine/D-alanine ligase [Desulfurispirillum indicum S5]
          Length = 303

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/300 (32%), Positives = 156/300 (52%), Gaps = 12/300 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +LMGG S EREVS+ SG     ALE+ G+ V  +D  +        +  D+ +N LHG
Sbjct: 5   VGLLMGGTSREREVSVQSGTFVGKALEELGYAVRILDP-QEPRWQEKLIGVDMVYNTLHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  L++  IPYT +G+L SA+SMDK+ +K++  +CG+P    ++V       
Sbjct: 64  PVGEDGTVQGYLQMCGIPYTGTGVLGSAVSMDKIAAKRIALACGIPTPAYLVVTADMAHG 123

Query: 121 QHLI------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +      S P V+K  + GSS+G+ ++         L +        Q+++E+Y+ G
Sbjct: 124 AVDMLAKSSFSFPLVVKVPREGSSIGVFIVHDAGEFQRALQECLQL--DSQVMVEEYIQG 181

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            ELT G + D +L +    V  + FY Y  KY+   + + +P K+       V   +   
Sbjct: 182 YELTSGFLDDLALPLV-GIVAGNAFYDYAAKYTKGMTVYDVPGKVDPSAASRVVDYSRRL 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G RG  R D++        ++LE+N  PGMT  S+ P+ A  AG SF +++  ++E
Sbjct: 241 CRALGLRGAFRVDYML--KDDVPYFLEVNTNPGMTQTSLIPKAAGAAGMSFADVVAKVLE 298


>gi|324326581|gb|ADY21841.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 311

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  VGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 VDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +EIN  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 RVR 306


>gi|153941210|ref|YP_001389824.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|166198480|sp|A7GAL4|DDL_CLOBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152937106|gb|ABS42604.1| D-alanine--D-alanine ligase [Clostridium botulinum F str.
           Langeland]
 gi|295317911|gb|ADF98288.1| D-alanine--D-alanine ligase [Clostridium botulinum F str. 230613]
          Length = 300

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGIS+EREVSL+SG+     LE    ++  I +D+   ++      D AF  LHG
Sbjct: 3   IGIIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVMEKAKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K  + I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDKEGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +        + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KDGIPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|27904697|ref|NP_777823.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
 gi|29427409|sp|P59435|DDL_BUCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27904094|gb|AAO26928.1| D-alanine-D-alanine ligase [Buchnera aphidicola str. Bp (Baizongia
           pistaciae)]
          Length = 309

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 156/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S ER +SL SG    ++L  +G     ID        L H K   AF  LHG
Sbjct: 8   IAVLLGGTSQERNISLISGYNILNSLLKSGIHAVAIDTKDFPITQLPHQKFTKAFIALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q++L+ L IP+T S  L SA+S++K ++K +  S  +PV P + +N+   + 
Sbjct: 68  RDGEDGTIQSVLKYLNIPFTGSKTLPSAISINKFKTKLLWQSFNLPVVPYLHINKHEFNK 127

Query: 121 QHLISP---------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + L            P ++KP + GSS+GI ++   +++       +++   + +LIE++
Sbjct: 128 KFLQKFKKNISLLGLPIIVKPNQEGSSIGITIVYSYETLYKA--CKTAFIFDNSILIEKF 185

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  +     +       P++ FY+Y  KY S  +T+  P+ +      E++++ 
Sbjct: 186 IYGEEYTISI-LGKKILPIIRICPENTFYNYNSKYLSNRTTYFCPSGLNKLKELELKKIT 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   I   G  R D + D    K + LE N  PGMT  S+FP  A  AG S++ L+  
Sbjct: 245 LTAWNIIDGTGWGRVDVIMD-YKNKFWLLEANTCPGMTDHSLFPMSAKKAGISYQILVQK 303

Query: 292 MVEDA 296
           ++E A
Sbjct: 304 ILELA 308


>gi|239618027|ref|YP_002941349.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506858|gb|ACR80345.1| D-alanine/D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 305

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 150/300 (50%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLH 59
           + VL GG+S ER +SL SG    +ALE  G+ V   D+       LA L+  DL F  LH
Sbjct: 8   ITVLYGGLSKERPISLKSGSNVINALEKLGYIVDAFDLRADNITELAKLRDTDLVFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +Q++LEL  I Y  S  L SA+  +K  + +++S+                +
Sbjct: 68  GKFGEDGKIQSLLELFGIEYIGSDSLVSAICFNKNLTYKLLSNTITMPRW--KTITSEEE 125

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P VIKP   GSS+G+ +    + +      +        L++E+Y+ G ELT 
Sbjct: 126 LEGWKHFPAVIKPANEGSSIGVYICDTFEELQNK--TTKVLKEYKTLILEEYIKGRELTI 183

Query: 180 GVMGDASLDVTEIA---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            ++      V        PK  FY YE KY++  +  ++PA I   + +E+++L+     
Sbjct: 184 SIIEKGGQPVVLPILELKPKRRFYDYEAKYTAGLTEFIVPAPIDDKLKEEIKKLSKRIFT 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCR  +R D +      + ++LE+N  PG+T +S  P  A  AG  F EL+  +V++A
Sbjct: 244 ALGCRHFARIDGIL--KENQFYFLEVNTIPGLTDLSDLPVSARAAGMGFEELIDLIVKEA 301


>gi|107021640|ref|YP_619967.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116688585|ref|YP_834208.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
 gi|123245313|sp|Q1BZG1|DDL_BURCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359118|sp|A0K488|DDL_BURCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|105891829|gb|ABF74994.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia AU 1054]
 gi|116646674|gb|ABK07315.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia HI2424]
          Length = 313

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|163940473|ref|YP_001645357.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|163862670|gb|ABY43729.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
          Length = 311

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 188 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KVR 306


>gi|254480088|ref|ZP_05093336.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
 gi|214039650|gb|EEB80309.1| putative D-ala D-ala ligase N-terminal domain protein [marine gamma
           proteobacterium HTCC2148]
          Length = 307

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 98/298 (32%), Positives = 157/298 (52%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+  + AL    + V  +D       V      D AFN LHG
Sbjct: 11  IAVLLGGTSAERDVSLLSGRTVSDALRGLDYSVRDVDPA-DADWVAQLQGVDYAFNALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q  LE L I YT SG+L SAL+MDK RSKQ+    G+      +++  T   
Sbjct: 70  PGGEDGTIQGALEALGIRYTGSGVLGSALAMDKRRSKQLWQGIGIATGGFEMLDADTDWQ 129

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             +       +KP   GSS+G+      +S+      +++++ G  ++ E++++G E T 
Sbjct: 130 AVIDRLGKVFVKPACEGSSIGMAPASDAESLRTAYEGAAAYSGG--VMAEKFINGPEYTV 187

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD +L    +   +++FY Y+ KY S ++++  P+ +      +V  +A  A +++G
Sbjct: 188 AILGDEALPSIRMVT-ENEFYDYDAKYLSDDTSYHCPSGLNASEEAQVGAMALAAFRSLG 246

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           C G  R D + D    + F LE+N  PGMT  S+ P  A  AG     L+  ++  AS
Sbjct: 247 CAGWGRVDTMRD-SDGRFFVLEVNTIPGMTSHSLVPMAARQAGMEVPALVERILTLAS 303


>gi|119489841|ref|ZP_01622596.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
 gi|119454269|gb|EAW35420.1| D-alanylalanine synthetase [Lyngbya sp. PCC 8106]
          Length = 364

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 159/351 (45%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL------------ 44
           + +L GG S E EVS+ S +A A AL+       +++  + + +                
Sbjct: 6   VGLLFGGRSGEHEVSIRSAQAIAKALKSDQNASKYELLPVYIGKDGVWQKGEIAQQIIAS 65

Query: 45  ----VLAHLK-------------PD--------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                L   K             PD        + F +LHG  GEDG +Q +L L+++P+
Sbjct: 66  GEPLYLTDEKTTSTDLVPSPSLLPDPTNFAEIEVWFPILHGPNGEDGTIQGLLTLMQVPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------------LISPP 127
             SG+L SA+ MDK+  K + S  G+      +V R  + S               +  P
Sbjct: 126 VGSGVLGSAVGMDKIAMKMIFSQAGLSQVKYKMVTRSQIWSNPCVFPKLCDELELELGYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185
             +KP   GSS+GI  ++    +   L  ++  ++  ++++E  V+  EL C V      
Sbjct: 186 CFVKPANLGSSVGISKVRSRAELETALDNAA--SYDRRIIVEAGVEARELECAVLGNDTP 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                      SDFY YE KY++  +   +PAK+  +I  +V+ +A  A  A+   G++R
Sbjct: 244 QASTVGEITFASDFYDYETKYTAGQADLFIPAKVSDNIANQVKEMAVKAFLAVDAAGLAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF +   + +V   EIN  PG T  S++P++ A +G SF EL+  +V+ A
Sbjct: 304 VDFFYVEKTGEVLINEINTLPGFTATSMYPQLWAASGISFSELVDRLVQLA 354


>gi|53729117|ref|ZP_00348323.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207508|ref|YP_001052733.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae L20]
 gi|165975478|ref|YP_001651071.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149289|ref|YP_001967814.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|303250499|ref|ZP_07336696.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307244821|ref|ZP_07526920.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249219|ref|ZP_07531216.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307251541|ref|ZP_07533448.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307253775|ref|ZP_07535629.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307256041|ref|ZP_07537829.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|307260471|ref|ZP_07542166.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|307262602|ref|ZP_07544232.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|166198470|sp|A3MY92|DDL_ACTP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|190359107|sp|B0BRH9|DDL_ACTPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485852|sp|B3GZL0|DDL_ACTP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126096300|gb|ABN73128.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875579|gb|ABY68627.1| D-alanine-D-alanine ligase B [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914420|gb|ACE60672.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|302650487|gb|EFL80646.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306854266|gb|EFM86472.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858743|gb|EFM90802.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306861005|gb|EFM93011.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306863259|gb|EFM95199.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306865463|gb|EFM97358.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|306869874|gb|EFN01656.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306872025|gb|EFN03739.1| D-alanine--D-alanine ligase [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 303

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 160/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL+SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSQEREVSLNSGAAVTEALKSLGYNVEGIDTKDFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K +  + G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAVTLDKFRTKLMWQAVGLPTADMVVVRRGEAVD 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +      +  P  +KP   GSS+G+  +K  + +   +    +      +L+E ++ G E
Sbjct: 128 SEQIIAKLGLPVFVKPSSEGSSVGVTKVKTVEQLLPAV--EEALKFDSIVLVEAFLAGKE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P+ +FY Y  KY S N+ +++P  +  D   EV  L   A++
Sbjct: 186 YSVPVLDGQVLPAV-QIIPEGEFYDYHAKYISDNTQYLVP-ALSDDRQAEVAELVKAAYE 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D  +     +E+N  PGMT  SIFP+ AA  G  F +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDA-NGHFNLVEVNTCPGMTSHSIFPKSAATVGIPFEKLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|289663635|ref|ZP_06485216.1| D-alanine--D-alanine ligase [Xanthomonas campestris pv. vasculorum
           NCPPB702]
          Length = 318

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL+SG     AL   G     +D   ++   L   + D  FNVLHG
Sbjct: 19  VAVLLGGTSSEREVSLNSGSNVLEALRARGVDAQPVDGIPALAKALVAQQFDRVFNVLHG 78

Query: 61  NF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +   GEDG+VQ ++E   +PYT S +L SALSMDK+R+KQV  S G+             
Sbjct: 79  HNGGGEDGIVQGLMEAFGVPYTGSNVLGSALSMDKIRTKQVWLSLGLSTPRYARLAAGAS 138

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P ++KP   GSS+G+  +     +   +  + +  +   LL+EQ ++
Sbjct: 139 AAEIHAAAQQIGLPVIVKPANEGSSVGVSRVFDQAQLEEAV--TLAARYDGALLMEQLIE 196

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  V+GD +L      VPK  +Y Y  KY + ++ ++ P         ++++LA  
Sbjct: 197 GDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYLAEDTQYLCPGLEGDAE-AQIRQLALD 254

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GCRG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F  L+  ++
Sbjct: 255 AFRAVGCRGWGRVDVMRDGSSGELYLLEVNAAPGMTSHSLVPKAAHQLGIDFETLVWRVL 314

Query: 294 ED 295
           E 
Sbjct: 315 EQ 316


>gi|254671165|emb|CBA08255.1| D-alanine--D-alanine ligase B [Neisseria meningitidis alpha153]
          Length = 304

 Score =  177 bits (448), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 106/299 (35%), Positives = 158/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG  G  R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAEGCVRVDFLKDT-DGKLYLLEINTLPGMTGHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|110799404|ref|YP_695267.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110674051|gb|ABG83038.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 302

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/300 (31%), Positives = 159/300 (53%), Gaps = 10/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++ +   +L  +K  D A   LH
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIIN-NKRDILEKVKGLDFALLALH 61

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRF 116
           G FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +   
Sbjct: 62  GKFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEI 121

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             D    I  P  +KP  GGSS+    + K + I   +       + ++++IE +V G E
Sbjct: 122 DYDKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYYEEVIIESFVKGRE 179

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    +
Sbjct: 180 ITCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFE 237

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 238 VLKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|309792366|ref|ZP_07686834.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
 gi|308225587|gb|EFO79347.1| D-alanine--D-alanine ligase [Oscillochloris trichoides DG6]
          Length = 365

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 101/356 (28%), Positives = 160/356 (44%), Gaps = 62/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG S E EVSL S +A  +AL+   ++V  + + +    +               
Sbjct: 5   VAVLFGGQSGEHEVSLVSAQAVIAALDPTRYRVVPVGISKDGRWLAGSGAMAALVAAADS 64

Query: 46  ----------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                             L     D+ F VLHG  GEDG VQ +
Sbjct: 65  TRLPAGAHYPQEDLEADEVEVAHTGGAGQVSVARLLPPGVDVVFPVLHGPRGEDGTVQGL 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------- 123
           LEL  + Y   G+ ASA+ MDK   K   ++ G+P+ P +LV R                
Sbjct: 125 LELAGVAYVGCGVAASAVGMDKALMKAAFAAAGLPLLPWLLVRRHEWQQNPEATYNQIEA 184

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+G+   K      L    + +  +  ++++EQ +   E+   V+
Sbjct: 185 ALTYPVFVKPANMGSSVGVSKAKDRD--GLAEALAEAARYDRRIVVEQGIPAREIEVSVL 242

Query: 183 GDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           G+   +V+     VP  ++Y Y  KY    S   +PA I  D+ +EV+RLA  A Q+I  
Sbjct: 243 GNDEPEVSIPGEVVPSGEWYDYHAKYLGGQSAIHIPAPISADLSEEVRRLALRAFQSIDG 302

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R DFL D  S +++  E+N  PG TP+S++ +M A +G  +  LL  ++  A
Sbjct: 303 AGLARVDFLLDKESGQLWINEVNTMPGFTPISMYAKMWAASGLDYPTLLDRLISLA 358


>gi|229060293|ref|ZP_04197660.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|229167456|ref|ZP_04295194.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228616018|gb|EEK73105.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228719020|gb|EEL70636.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 304

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LEELDKLGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|325518026|gb|EGC97834.1| D-alanine--D-alanine ligase [Burkholderia sp. TJI49]
          Length = 313

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L     + AF  LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLAALKDEGFERAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVLRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATEIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDRIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P     E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAVQEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G S+ EL++ ++
Sbjct: 250 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARSVGISYSELVVKVL 307


>gi|297172655|gb|ADI23623.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_06A21]
          Length = 359

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 153/347 (44%), Gaps = 49/347 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------- 47
           +L GG S+E EVS+ S ++  +A++   ++   + + R    +LA               
Sbjct: 3   LLFGGQSAEHEVSVISARSVYAAIDRQRYEPILVGITRQGSWLLAGSDASILEHDTVDDM 62

Query: 48  ------------HLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                        LK             D+ F +LHG FGEDG +Q +LEL+ + Y  +G
Sbjct: 63  SLPVVYLASAGQELKVSNASPHDQGVSVDVVFPLLHGPFGEDGTIQGLLELVGMAYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           + AS++ MDK  +K + ++ G+      ++ R              +  +  P  +KP  
Sbjct: 123 VAASSVGMDKALAKLIFNASGLSQTAYQVIGRNRWHADAETVVFNIEKHLQYPLFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIA 193
            GSS+G+   K   S+   L  ++ ++    +    +    +E            +    
Sbjct: 183 MGSSVGVSKAKDAASLTKALDIAAQYDVKMLVEESVEDCHEVECAVLGNDSPRASIIGEI 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P +DFY Y+ KY    S  ++PA +   +   VQ +A  A Q+I C G++R DF     
Sbjct: 243 IPGADFYDYQTKYLDDRSELIVPANLSSSVSNMVQGMAIKAFQSIDCTGLARVDFFVRRA 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              +F  EIN  PG TP+S++P +   +G ++ EL+  +++ A   R
Sbjct: 303 DDFIFINEINTMPGFTPISMYPILWQASGLTYPELIDQLIQLAVERR 349


>gi|283468533|emb|CAP19205.1| putative D-ala D-ala ligase [Prosthecobacter vanneervenii]
          Length = 307

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/306 (32%), Positives = 146/306 (47%), Gaps = 14/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF---NV 57
           +A+LMGG  SER+VSL + ++ A AL   G  V ++DV      V     P   F   N+
Sbjct: 9   IALLMGGPGSERKVSLKTAESVAEALRSKGATVVEVDVTGPDFEV-----PGDVFIAMNL 63

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           +HG FGEDG +Q+ILE   I YT +G+ +S ++ DK+ SK+   + GVP   S       
Sbjct: 64  IHGTFGEDGQIQSILEQRGIRYTGAGVASSRIAFDKLLSKERFIAAGVPTPRSQTYPLDG 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P V+KP + GSS+G+ +      +   L  +  + H    LIE YV G EL
Sbjct: 124 SQPL-AIGLPLVVKPPREGSSVGVHICHTQAELESALEDAKKFGHD--TLIEDYVAGKEL 180

Query: 178 TCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T GV+GD  L +  I            Y     +  + +  PA +  ++ K VQ  A  A
Sbjct: 181 TVGVLGDQVLPIIHIEPVEGFYDINNKYPWMGGTGKTNYNCPANLSPEVTKAVQDAALKA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q+ G     R D +     +  F LE+N  PGMT  S+ P+ A   G  F +L   ++E
Sbjct: 241 FQSCGTEVYGRVDVMLRDSDQAPFVLEVNTIPGMTSSSLLPKAAKAVGIEFPDLCAKIIE 300

Query: 295 DASCLR 300
            +   R
Sbjct: 301 LSLAAR 306


>gi|229133446|ref|ZP_04262273.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228649846|gb|EEL05854.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 304

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    I  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVYDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               + F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-QQLPIISIRHAAVFFDYNAKYDDTSTVEEV-IELPAEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KEGIPYVMEVNTLPGMTQSSLLPKSAEAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|149910629|ref|ZP_01899267.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149806357|gb|EDM66332.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 312

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 103/302 (34%), Positives = 159/302 (52%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL SG A  + L  AG     +D        L       AF  LHG
Sbjct: 14  VAVLFGGHSAEREVSLKSGAAVTAGLLRAGVDAHALDTAEYDVHQLGRDGFTHAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG++Q  LE L IPYT S +L +AL+MDK+R+KQ+  S G+P     +V     + 
Sbjct: 74  RGGEDGVMQGALEQLGIPYTGSRVLGAALAMDKIRTKQIWQSQGLPTALYRVVTPINFNT 133

Query: 120 -----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P +IKP K GSS+G+  +     +   +  ++++ + +++L+EQ+++G
Sbjct: 134 TIASDIIADLGSPVIIKPAKEGSSIGMAKVHNVAELETAV--TAAFAYDNEILVEQWIEG 191

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++GD  L V ++  P +  Y Y+ KY S  + ++ PA I  +  +++Q  A  A
Sbjct: 192 PEFTVAILGDEVLPVIQLKTPNTF-YDYQAKYQSNTTEYLCPAPITDEQRQQLQAYALKA 250

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R D + D    +   LE+N  PGMT  S+ P  A  AGY+F  L+  ++ 
Sbjct: 251 FHAVAAEGWGRVDAMLDAQ-GQFQLLEVNTVPGMTEKSLVPMAANAAGYNFDSLVSKVLA 309

Query: 295 DA 296
            A
Sbjct: 310 LA 311


>gi|109899818|ref|YP_663073.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
 gi|122971621|sp|Q15Q19|DDL_PSEA6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109702099|gb|ABG42019.1| D-alanine--D-alanine ligase [Pseudoalteromonas atlantica T6c]
          Length = 318

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG S+EREVSL SG+A  SAL  AG      D   S    L   K D    +LHG
Sbjct: 20  VAVMFGGRSAEREVSLRSGQAVLSALISAGVNAHGFDPAESELHQLVEQKFDRVLIMLHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG +Q  L+ + +PYT +G+L SAL MDK+RSKQV  S G+P              
Sbjct: 80  RGGEDGSLQGALQQMNMPYTGTGVLGSALCMDKIRSKQVWQSLGLPTANYEIADKRDFNA 139

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    +    ++KP + GSS+G+  +   Q   L      ++ + D++L+EQ++ G
Sbjct: 140 ANCSDIMSRLGDLVMVKPAQEGSSIGMAKVSNAQ--QLAAAIQQAFEYDDKVLLEQFIQG 197

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  ++   ++    ++ P+   Y YE KY S  + +  P+ +P +    + RLA  A
Sbjct: 198 SEYTVSLLNGEAMPSISMSTPRDF-YDYEAKYQSNTTEYFCPSGLPAEQEGLLARLALDA 256

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+   G  R DF+ D L  + + LE N  PGMT  S+ P  A  AG SF +L L ++ 
Sbjct: 257 FDAVAGSGWGRVDFMQDML-GQFYLLEANTVPGMTEKSLVPLAAKQAGLSFEQLSLAVLA 315

Query: 295 DA 296
            A
Sbjct: 316 TA 317


>gi|160872919|ref|ZP_02063051.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
 gi|159121718|gb|EDP47056.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Rickettsiella grylli]
          Length = 365

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 161/346 (46%), Gaps = 49/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +AVL GG S+E E+SL S  A    L+   F +  I +D+                    
Sbjct: 11  VAVLYGGFSAEHEISLLSAAAVIKNLDQRKFSIIPIGIDKQGRCFVNQLQSLYSGDTILL 70

Query: 43  -------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                         +V      D+ F VLHG  GEDG +Q +L+L++I Y  + +L SA+
Sbjct: 71  ETENAQSFSGLAELMVDKKGHYDVVFPVLHGALGEDGTIQGLLDLMDIAYIGADVLGSAV 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
            MDK+ SK++  +  +PV P +  N               +  I  P  IKP+ GGSSLG
Sbjct: 131 GMDKVVSKRLACAAHIPVVPFLAFNSGHWLRNKSLYSQQIRQEIGYPLFIKPVNGGSSLG 190

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL------DVTEIAV 194
           I  IKKD  +   +       +  ++L+E+ ++  E+   V+ +               +
Sbjct: 191 ITKIKKDTDLENAIELVF--TYSTKVLVEKALEVREVEIAVLENQKWGAEPYVSQIGEII 248

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P+ +FYSYE KY        ++PA +     ++++RLA      + C G++R DF  +  
Sbjct: 249 PRHEFYSYEAKYLDEKGAQLIIPASLQNSQLQQIKRLAIELFNGLDCSGMARIDFFIEKR 308

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           S+K+++ E+N  PG T +S++P +   +G ++  LL  ++E A   
Sbjct: 309 SQKIYFNELNTIPGFTKISMYPRLWEVSGIAYTSLLTHLIELALTR 354


>gi|301054153|ref|YP_003792364.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300376322|gb|ADK05226.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 311

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPIKLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPTELKERVNKASLACYKA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 RVR 306


>gi|332142422|ref|YP_004428160.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327552444|gb|AEA99162.1| D-alanine--D-alanine ligase [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 322

 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 154/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  +AL   G      D        L  L  D A  +LHG
Sbjct: 17  VAVLLGGDSAEREVSLNSGNAVLNALLRQGVNAFAFDPAERPLNDLLSLDVDRALIMLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------ILVN 114
             GEDG +Q  L+ L+IPYT S +L SAL+MDK+ +KQV  S G+P              
Sbjct: 77  RGGEDGAMQGALQFLKIPYTGSRVLGSALAMDKIHTKQVWQSLGLPTAKYEIADKRHFEA 136

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+  +   + +   +    ++ + +Q+L+EQY+DG
Sbjct: 137 GKCSAIMDKLGNEVMVKPAREGSSIGMARVTSAKQLETAI--QDAFKYDNQVLLEQYIDG 194

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  V+   +L    ++ P +  Y Y  KY    + +  P+ +  +   ++ +LA  A
Sbjct: 195 PEFTVSVIQGQALPSIRMSTPHTF-YDYAAKYQDNTTEYYCPSGLSEEQEAQLAKLASRA 253

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             AI   G  R D + D   R+ + LE N  PGMT  S+ P+ A  AG +F EL+L ++ 
Sbjct: 254 FDAISGSGWGRIDVMQDNQ-RQFYLLEANTVPGMTEKSLVPKAAKVAGLTFDELVLSILS 312

Query: 295 DA 296
            +
Sbjct: 313 TS 314


>gi|296332824|ref|ZP_06875284.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305673170|ref|YP_003864842.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
 gi|296150104|gb|EFG90993.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           ATCC 6633]
 gi|305411414|gb|ADM36533.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. spizizenii
           str. W23]
          Length = 361

 Score =  176 bits (447), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            ++ GG S+E  VSL +  A   AL    F +  I +      V                
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVKGARLTEPVSNVKMLQ 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    +   D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 66  FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           G+LAS+  MDK+  K +           +  +    +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPEESCEQVEQELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ ++G E+        D    V  
Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA +  + Y ++  +A  A +AI   G+ R+DF   
Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAHVTDEEYAKISEMAIKAFKAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|229075051|ref|ZP_04208053.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229103218|ref|ZP_04233903.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228680242|gb|EEL34434.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-28]
 gi|228708108|gb|EEL60279.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 304

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIVSIRHAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|21672494|ref|NP_660561.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|22654229|sp|O51927|DDL_BUCAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21623113|gb|AAM67772.1| D-alanine--D-alanine ligase [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 306

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 161/303 (53%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGNSSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  +             S 
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               + +     +  P VIKP   GSS+GI ++     +   +  + ++N+ + ++IE++
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++    L      + K++FY Y  KY   ++ ++ P+ +     +E++++ 
Sbjct: 183 LKGTEYTVSILNKKVLPPI-KIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +A  ++GC+G  R D + D    K + LEIN  PGMT  S+ P  A   G SF EL+L 
Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMAAKSIGISFDELILK 300

Query: 292 MVE 294
           +++
Sbjct: 301 ILK 303


>gi|153955531|ref|YP_001396296.1| D-alanine--D-alanine ligase [Clostridium kluyveri DSM 555]
 gi|219855927|ref|YP_002473049.1| hypothetical protein CKR_2584 [Clostridium kluyveri NBRC 12016]
 gi|189083038|sp|A5N1C9|DDL_CLOK5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767726|sp|B9E560|DDL_CLOK1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146348389|gb|EDK34925.1| Ddl [Clostridium kluyveri DSM 555]
 gi|219569651|dbj|BAH07635.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 297

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 160/297 (53%), Gaps = 8/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SGK+  + ++   +++  I +D+   +       D AF  LHG
Sbjct: 3   VGIIMGGISSEREVSLNSGKSIINYMDKNKYEIVPIVIDKKNDVFEKVKDIDFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFT 117
            FGEDG++Q++ + ++IPY+    L S + MDK  SK+++ S  +     I +       
Sbjct: 63  KFGEDGIIQSVFQTMDIPYSGCSPLTSGICMDKDISKKLLYSANINTAEWICIKSIENID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+   +I+K + I        ++N+ ++++IE+Y++G E+
Sbjct: 123 YDYLEKMGYPVVVKPNSGGSSVATTIIEKSEDIEEAA--RLAFNYDEEVMIEKYIEGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++   +L +  I   K  F+ Y  KY+   S  ++  +    +  +++ ++    + 
Sbjct: 181 TCCILDGTALPILAIKPNKGSFFDYTSKYADGGSEEIV-VEFEKPLQSKIEEISLKCWEL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             C+G  R D +     +  + LE+N  PG+T  S+FP+ A     SF ELL  +++
Sbjct: 240 FKCKGYVRVDMIL--KDKVPYVLELNTLPGLTKNSLFPKSANGVNISFTELLDKIIQ 294


>gi|319406003|emb|CBI79634.1| D-alanine--D-alanine ligase [Bartonella sp. AR 15-3]
          Length = 306

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 152/309 (49%), Positives = 216/309 (69%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
           +AVLMGG        L        SSG ACA  LE  G+ V+++DVD  +  +L  L+P 
Sbjct: 6   IAVLMGG--------LSSERSVSLSSGSACADVLEAHGYYVTRVDVDSRIASILEKLQPH 57

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + FN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S G+P+ PS  
Sbjct: 58  IVFNALHGSFGEDGCIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASVGIPIAPSYT 117

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++RF + S+H + PPYVIKP+  GSS GII++  D++ P   + SS W H D++++E+Y+
Sbjct: 118 MSRFAIGSKHPLEPPYVIKPVHEGSSFGIIIVNGDEAFPPRNIASSEWMHEDEVMVEKYI 177

Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G ELTC V+G+  LDV EI       FY+Y+ KY S  S H+ PA++ L+IY++VQR++
Sbjct: 178 PGRELTCAVLGNEVLDVCEIIPDQHFQFYNYDSKYKSGGSIHICPAQLSLNIYQKVQRIS 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQAIGCRGISRSDF F+  + ++ WLEIN QPGMTP S+ P++A  +G ++ +++ W
Sbjct: 238 LAAHQAIGCRGISRSDFRFNEETEELIWLEINTQPGMTPTSLVPDIAKASGRTYSDIVKW 297

Query: 292 MVEDASCLR 300
           +VEDASC+R
Sbjct: 298 IVEDASCMR 306


>gi|168215133|ref|ZP_02640758.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
 gi|170713457|gb|EDT25639.1| D-alanine--D-alanine ligase [Clostridium perfringens CPE str.
           F4969]
          Length = 301

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLCYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|121635442|ref|YP_975687.1| D-alanine--D-alanine ligase [Neisseria meningitidis FAM18]
 gi|166198495|sp|A1KVL1|DDL_NEIMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120867148|emb|CAM10915.1| D-alanine--D-alanine ligase B [Neisseria meningitidis FAM18]
 gi|325132970|gb|EGC55647.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M6190]
 gi|325134891|gb|EGC57524.1| D-alanine--D-alanine ligase B [Neisseria meningitidis M13399]
 gi|325138958|gb|EGC61508.1| D-alanine--D-alanine ligase B [Neisseria meningitidis ES14902]
          Length = 304

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRNDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG     R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAESCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|283468508|emb|CAP18778.1| putative D-ala D-ala ligase [Akkermansia muciniphila]
          Length = 316

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV             +LA+N++H
Sbjct: 15  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH--GPDFRLPEGTELAYNIIH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + +++     
Sbjct: 73  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 132

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP   GSS+G+ ++++ + +   + ++    HG  +L+E+++ G ELT 
Sbjct: 133 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 190

Query: 180 GVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           G++   +L V  I      +     Y        + ++ PA +P +    VQ  A  A++
Sbjct: 191 GILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYK 250

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   + E +
Sbjct: 251 AAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELS 310


>gi|168181325|ref|ZP_02615989.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|237793779|ref|YP_002861331.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
 gi|259645164|sp|C3L065|DDL_CLOB6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|182675365|gb|EDT87326.1| D-alanine--D-alanine ligase [Clostridium botulinum Bf]
 gi|229260958|gb|ACQ51991.1| D-alanine--D-alanine ligase [Clostridium botulinum Ba4 str. 657]
          Length = 300

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 95/297 (31%), Positives = 155/297 (52%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGIS+EREVSL+SG+     LE    ++  I +D+   +V      D AF  LHG
Sbjct: 3   IGVIMGGISTEREVSLNSGREVIKYLELLEHEIIPIIIDKKEDVVEKVKGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L+IPY+  G L SA+ MDK  +K+++    +     +    V    
Sbjct: 63  EFGEDGTVQSVLQTLDIPYSGCGPLTSAICMDKDMTKKILKYANINTADWVNVSSVEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P  +KP  GGSS+   ++K    I   +    +  +  +++IE Y  G E+
Sbjct: 123 YEAIEKIGYPVFVKPNSGGSSVATNLVKDGDGIKEAV--ELALKYDKEVMIENYTKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M +  +       P ++F+ Y  KY+   S  V+  ++  +++K+V+ +A    + 
Sbjct: 181 TC-CMLNGKMLPVLAIRPHAEFFDYTAKYADGGSDEVV-IELEENLHKKVEEMALACWKE 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C    R D +    +   + LE+N  PGMT  S+FP+ A   G SF ELL  +V+
Sbjct: 239 LKCEVYVRVDMIV--KAGVPYVLELNTLPGMTKNSLFPKSANAVGISFAELLNSIVK 293


>gi|187735167|ref|YP_001877279.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
 gi|187425219|gb|ACD04498.1| D-alanine/D-alanine ligase [Akkermansia muciniphila ATCC BAA-835]
          Length = 311

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 159/300 (53%), Gaps = 8/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +A+L+GG  +EREVSL SG +   AL  AGF  V+++DV             +LA+N++H
Sbjct: 10  IALLLGGPGAEREVSLVSGNSVYDALCRAGFTDVTKVDVH--GPDFRLPEGTELAYNIIH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG +QAILE   +PYT +G  +SAL  +K  SK+V    GVP   + +++     
Sbjct: 68  GTFGEDGTLQAILEERGVPYTGAGSRSSALCFNKSESKKVFLEAGVPTPHAEILDCSNGI 127

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP   GSS+G+ ++++ + +   + ++    HG  +L+E+++ G ELT 
Sbjct: 128 VMPSLPLPFVIKPPCEGSSVGVHIVRRQEDVLPAMEEAV--THGTTVLVEEFIQGKELTV 185

Query: 180 GVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           G++   +L V  I      +     Y        + ++ PA +P +    VQ  A  A++
Sbjct: 186 GILDGKALPVIHICPRSGFYDLSNKYPWMNMGGGTDYICPADLPEETAANVQEAALKAYK 245

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A G     R D L        F LEIN  PGMTP S+ P+ AA +G+ + +L   + E +
Sbjct: 246 AAGVEVYGRVDVLLREEDGAPFVLEINTIPGMTPSSLLPKAAAASGWPYEDLCEKIAELS 305


>gi|229100710|ref|ZP_04231550.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229116119|ref|ZP_04245511.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228667349|gb|EEL22799.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228682691|gb|EEL36729.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
          Length = 304

 Score =  176 bits (446), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDDLDKLGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-KHLPIVSIRHAAEFFDYNAKYDDVSTIEEV-IELPTEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|262193685|ref|YP_003264894.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
 gi|262077032|gb|ACY13001.1| D-alanine/D-alanine ligase [Haliangium ochraceum DSM 14365]
          Length = 330

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/299 (32%), Positives = 162/299 (54%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL 58
           + VL GG SSEREVSL SG    +AL++ G++   +D     S+  +L   + ++ +N L
Sbjct: 26  VGVLYGGPSSEREVSLESGAGVLAALQERGYECVGVDWTPGSSLPALLVEHRVEVVWNAL 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ +   + +P T + I ASA++MDK+ SK++  S GVP     ++     
Sbjct: 86  HGTYGEDGAVQGLCACMGLPCTGASIAASAVAMDKILSKRLFESVGVPTPQWRVLRPDEG 145

Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           D+       + P VIKP   GSS+G+ ++++   I   L ++ +      +L+E+Y++G+
Sbjct: 146 DTAAVFAEWALPLVIKPAYEGSSVGLSLVRERDEIGPALKRARAGQ--GPVLVERYIEGV 203

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           EL+ G++ D  L       P S  Y YE KY   ++  ++P ++        + L   A+
Sbjct: 204 ELSVGILADRVLGAV-EIRPTSGLYDYEAKYVRDDTAFLVPPELERGHIDTCEALGLRAY 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            A+GC G +R+D          F LE+N  PGMT  S+ P++AA+AG  +  L   ++E
Sbjct: 263 HALGCTGYARADLRV-QADGSAFILEVNTLPGMTSHSLLPKVAAHAGVDYPTLCERILE 320


>gi|167854933|ref|ZP_02477708.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219870393|ref|YP_002474768.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
 gi|254767730|sp|B8F3B8|DDL_HAEPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167853890|gb|EDS25129.1| D-alanine--D-alanine ligase [Haemophilus parasuis 29755]
 gi|219690597|gb|ACL31820.1| D-alanine--D-alanine ligase [Haemophilus parasuis SH0165]
          Length = 303

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 106/301 (35%), Positives = 162/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+ERE+SL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREISLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R    +
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              I      P  +KP   GSS+G+  +K  + +   +    +  +   +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLLPAI--EEALKYDSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P  +FY Y  KY S N+ +V+PA    D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|325128840|gb|EGC51699.1| D-alanine--D-alanine ligase B [Neisseria meningitidis N1568]
          Length = 304

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 105/299 (35%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG
Sbjct: 7   VAVLMGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T   
Sbjct: 67  TYGEDGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFD 126

Query: 121 Q--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +
Sbjct: 127 AVEEKLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYS 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQA 237
           C V+    L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QA
Sbjct: 185 CPVLNGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQA 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG     R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 244 IGAESCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 301


>gi|320536772|ref|ZP_08036773.1| D-ala D-ala ligase [Treponema phagedenis F0421]
 gi|320146378|gb|EFW37993.1| D-ala D-ala ligase [Treponema phagedenis F0421]
          Length = 368

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 156/351 (44%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG SSE EVSL S  +    +      +  I + +     L +            
Sbjct: 3   IAIMYGGKSSEHEVSLVSATSIVRNINSL-HTIHLIGITKQGTWFLQNQDELMRIRSDEQ 61

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          L+ D+ F VLHG+FGEDG +Q + E+ E+
Sbjct: 62  AVLQIHTAAENQVSIIPGGGTKGALKVGQRFLETDVIFPVLHGSFGEDGTIQGLFEMAEL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126
           PY   G+LAS+LSMDK ++K +  + G+P+ P   V + T D            +  +  
Sbjct: 122 PYVGCGVLASSLSMDKEKTKNLCQAAGLPIVPFFTVRKNTWDIQSERDLLIQEIEKELDY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+G  + K    +     ++ SW++   +        IE +        
Sbjct: 182 PLFVKPCRAGSSVGAGIAKDKNELLSRAEEAFSWDYKILVEACIPAREIECSVTGNETCI 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  +P   FY YE KY+  +     +PA+I  D  K ++ +A  A++ +   G +R
Sbjct: 242 AYTPGEIIPSHSFYDYEAKYTDPDGAILKIPAEITDDERKTIREIAMKAYKTLDLSGFAR 301

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  ++K++  EIN  PG T +S+FP+M A +G  + +L+  +++ A
Sbjct: 302 VDFFIDKKTKKIYLNEINTIPGFTSISMFPKMCAASGLPYPDLITLLLQLA 352


>gi|257465206|ref|ZP_05629577.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
 gi|257450866|gb|EEV24909.1| D-alanine--D-alanine ligase [Actinobacillus minor 202]
          Length = 303

 Score =  176 bits (446), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 107/301 (35%), Positives = 161/301 (53%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S+EREVSL+SGK+   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLFGGVSAEREVSLNSGKSVFEALQSLGYNVEAIDTKEFPIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G++Q  LE L IPYT  G++ASA+++DK R+K + ++ G+P     +V R    +
Sbjct: 68  GIGENGVLQGALEQLGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTAAMEVVRRGQAVN 127

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              I      P  +KP   GSS+G+  +K  + +   +    +      +L+E+ + G E
Sbjct: 128 SDEIIAKLGLPLFVKPASEGSSVGVSKVKTAEQLIPAI--EEALKFDSIVLVEENLAGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P  +FY Y  KY S N+ +V+PA    D   EV +L   A+ 
Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYISDNTQYVVPALNA-DRQAEVAKLVKQAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D        +E+N  PGMT  SIFP+ AA  GYSF  L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMEDGEGN-FRLVEVNTCPGMTSHSIFPKSAATVGYSFERLVERVLELS 302

Query: 297 S 297
           +
Sbjct: 303 A 303


>gi|170731885|ref|YP_001763832.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
 gi|190359117|sp|B1JV80|DDL_BURCC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169815127|gb|ACA89710.1| D-alanine--D-alanine ligase [Burkholderia cenocepacia MC0-3]
          Length = 313

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 94/299 (31%), Positives = 146/299 (48%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQEAELKRIARRA 249

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 250 FAVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 307


>gi|54295449|ref|YP_127864.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|81367752|sp|Q5WTI9|DDL_LEGPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53755281|emb|CAH16775.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Lens]
 gi|307611491|emb|CBX01162.1| D-alanine--D-alanine ligase A [Legionella pneumophila 130b]
          Length = 364

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 73/347 (21%), Positives = 149/347 (42%), Gaps = 51/347 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44
            +L GG S E EVSL S  +    L+   + +  I +D+S                 + +
Sbjct: 8   VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67

Query: 45  VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           V     P              ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 68  VTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  ++++    G+      L++          F  +       P  +KP   GSS+GI
Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192
                   +   +  +    + +++L+E+++ G E+          CG    + +   ++
Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA++   + +++++ A      + C+G++R DF  + 
Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A   
Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLAMIH 352


>gi|110833461|ref|YP_692320.1| D-alanine--D-alanine ligase [Alcanivorax borkumensis SK2]
 gi|123345751|sp|Q0VS00|DDL_ALCBS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110646572|emb|CAL16048.1| D-alanine-D-alanine ligase B [Alcanivorax borkumensis SK2]
          Length = 307

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 152/296 (51%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG A  + L + G     +D        L     D AF  LHG
Sbjct: 16  VAVLAGGRSAERAVSLKSGAAVHAGLRNLGLLAELVDPADKSVDTLR--GFDAAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R     
Sbjct: 74  RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVAGRE---- 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P ++KP   GSS+G+      + +   L+ +        +L+E +V+G E T  
Sbjct: 130 EAELGFPVIVKPAHEGSSIGMAKADNTEELGEALVAAE--KFDQDVLVEAWVNGPEYTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    +  P    Y +E KY S ++ ++ PA +     + ++ LA  A +  GC
Sbjct: 188 VLGDEALPAIRLQTPHVF-YDFEAKYQSDSTEYLCPAGLDDADEQALRTLALTAFRVAGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG  R D + D    +   LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 247 RGWGRVDVMRDEQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|219849721|ref|YP_002464154.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
 gi|219543980|gb|ACL25718.1| D-alanine/D-alanine ligase [Chloroflexus aggregans DSM 9485]
          Length = 362

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 48/347 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S E EVSL S  A  S L+   + +  + + +                    
Sbjct: 7   IAVIFGGQSGEHEVSLVSAHAVMSNLDPDRYHIEALGIGKDGRWWHGPGALAMLMAAADP 66

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                     +    D+ F VLHG +GEDG +Q + EL   PY 
Sbjct: 67  ARLPASATMVAPGPVRELGRVGEPGWSLPPADVIFPVLHGPYGEDGTIQGLFELAGHPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132
             G+ ASA+ MDK   K   ++  +P+ P +LV R             +  +  P  +KP
Sbjct: 127 GCGVAASAVGMDKAFMKAAFAAADLPILPWVLVRRHELAALEMVCERIEATLHFPLFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  ++    +   L +++  +    +        IE++        + +   
Sbjct: 187 ANLGSSVGVSKVRDRAELITGLHEAARHDRRIVVEQGISAREIEISVLGNEHVEVSIPGE 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  ++Y Y  KY +  S  ++PA +      +VQ LA  A QAI   G++R DFL D 
Sbjct: 247 IIPAGEWYDYHAKYIAGGSQTIVPAALTEMQIAQVQTLAKRAFQAIDGAGLARVDFLLDR 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               ++  E+N  PG TP+S++ +M   +G  + +LL  ++E A   
Sbjct: 307 EQGTLWLNEVNTMPGFTPISMYAKMWEASGLPYPQLLDRLIELALAR 353


>gi|258511603|ref|YP_003185037.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257478329|gb|ACV58648.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 383

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 63/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           + V+ GG S E EVSL S K+   AL+   +    I + +             L   +P 
Sbjct: 8   VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67

Query: 52  ---------------------------------------------DLAFNVLHGNFGEDG 66
                                                        D+ F VLHG FGEDG
Sbjct: 68  ALPSKSAQNASSPSNRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------ 120
            +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +   R +         
Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWAQDDGRIV 187

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+GI   +  + +   +  + S++    +        IE+
Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVEAVHLALSYDRRVIVEEAIDAREIEI 247

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 D    V    VPK +FY YE KY    +   +PA +  +  K V+  A  A QA
Sbjct: 248 GILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAFQA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           I   G++R DF  +  + +V   EIN  PG T  S++P++   +G ++ +LL  ++E A
Sbjct: 308 IDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIELA 366


>gi|269127661|ref|YP_003301031.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268312619|gb|ACY98993.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 336

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 111/330 (33%), Positives = 160/330 (48%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +AVL GG SSEREVS++S     +AL D G  V  ID  +                    
Sbjct: 3   IAVLFGGASSEREVSIASAAQVFTALRDRGHDVIAIDTAKGKLSPQEVEAFVSATVAYDP 62

Query: 41  ---------SVGLVLAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                     V   L          D+ F  LHG  GEDG +QA+L+   IPYT SG+L 
Sbjct: 63  PGVDDIPASEVTARLTAEDSELRGVDVVFLALHGGSGEDGTLQALLKAAGIPYTGSGVLG 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  SK++    GVP    I+      +    I  P ++KP   GS++G+ V+K 
Sbjct: 123 SAVAMDKDMSKRLFRQAGVPTPDWIMAPATAAEVAERIGFPAIVKPNSQGSTIGLTVVKA 182

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +++W    +++IE++V G EL  GV+   +L V EI     + + Y+ KY
Sbjct: 183 PEQLEEAIATAAAW--DHEVMIERFVPGRELVVGVLDGRALAVGEIVPQLGEIFDYQSKY 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +    PA +P +   EVQRLA  AH+A+     SR DF  D    +++ LE N  P
Sbjct: 241 QVGGAVETFPADLPAETAAEVQRLAVAAHRALKLGSYSRIDFRLDAQ-GRLWCLEANTLP 299

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GMT  S+ P+ AA  G  F EL   + E A
Sbjct: 300 GMTATSLMPQSAAAVGIGFAELCERLCELA 329


>gi|84686344|ref|ZP_01014238.1| D-alanine--D-alanine ligase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665527|gb|EAQ12003.1| D-alanine--D-alanine ligase [Rhodobacterales bacterium HTCC2654]
          Length = 283

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 135/288 (46%), Positives = 181/288 (62%), Gaps = 8/288 (2%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SLSSG+ CA+AL   G++V ++D    +   L+ + PD+ FN LHG FGEDG VQ +LE 
Sbjct: 2   SLSSGRECAAALRGEGYEVVELDAGPDLCARLSEIAPDVVFNALHGQFGEDGRVQGLLEW 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L IPYTHSG+L+SAL+MDK RSK+V S  G+P+  S L ++  ++ +H++ PPYV+KP  
Sbjct: 62  LRIPYTHSGVLSSALAMDKERSKEVFSQAGLPIAESRLASKDEIEGRHVMEPPYVVKPYN 121

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ ++ +  + P  L         D L++E+YV G ELT  VMGD +L VTEI  
Sbjct: 122 EGSSVGVYIVAEGANTPPKLAVDMP----DTLMVEKYVPGRELTVTVMGDRALAVTEIV- 176

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               +Y Y+ KY    S H +PAK+P  I       A  AH A+GCRG+SRSDF +D   
Sbjct: 177 -TDGWYDYDAKYKPGGSRHEVPAKLPDQITAACLDYAVRAHDALGCRGVSRSDFRWDEDK 235

Query: 255 R--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +  LE N QPGMTP S+ PE AA  G +F  L+ WMVEDASC R
Sbjct: 236 GLDGLILLEQNTQPGMTPTSLTPEQAATVGITFGALVRWMVEDASCNR 283


>gi|291544035|emb|CBL17144.1| D-alanine--D-alanine ligase [Ruminococcus sp. 18P13]
          Length = 357

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 94/347 (27%), Positives = 155/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE +VSL S       +    ++V  I + +    +               
Sbjct: 6   VAVVFGGVSSEHDVSLVSATNVIENIPQDKYEVMCIGITKKGRWLYYPGDTAAIASGEWE 65

Query: 46  ---------------------LAH-----LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                + +      K D+ F VLHG  GEDG +Q +++L  IPY
Sbjct: 66  RDPDCISAVLSPDPLHGGFLLIENGEATVRKVDVVFPVLHGKNGEDGTIQGLMDLARIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPYVIK 131
              G+LASA  MDK+ +  V+    +      ++ +                +  P  +K
Sbjct: 126 VGCGLLASASCMDKVHTHTVLDYNKIRTARWRMIGQRDLNRLDACCAQIGEELGYPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189
           P   GSS+GI      +++   +  +   +H ++++IE+++ G EL   V G  +     
Sbjct: 186 PANCGSSIGINKATDAETLKDAVKIAF--SHDNKVVIEEFIQGKELEVAVFGYDNPFASF 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P +DFY YE KY    S   +PA+I  D  KE++  A  A++A+GC+G+SR DF 
Sbjct: 244 VGEIEPCNDFYDYEAKYILGTSKLYIPARIDADSEKEIRETAVAAYKALGCKGLSRVDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  V   EIN  PG TP+S++P++    G S+  L+  ++E A
Sbjct: 304 L-KQDGTVILNEINTMPGFTPISMYPKLMENLGMSYSYLIDKLLEQA 349


>gi|226312432|ref|YP_002772326.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226095380|dbj|BAH43822.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 316

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 161/307 (52%), Gaps = 10/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           + V+MGGISSEREVSL +G+   + L+ + ++   I + +   +   +     D A   L
Sbjct: 3   IGVIMGGISSEREVSLKTGQEMINHLDRSRYEAVPIVITQRADLITQVQQAGIDFALLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + G+     +       
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKMLLKTAGIQTPAGLYWKDVYD 122

Query: 119 DSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++KP  GGSS+G+ +++ ++ +   + ++S       +LIE Y+ G EL
Sbjct: 123 PQAVEQLGYPVIVKPNLGGSSIGVQLVQNEKELLSAVQEASYL--DQGILIEPYLKGTEL 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L +  I    S+++ Y  KY    +   +  ++P DI + V+  A  ++Q 
Sbjct: 181 TCAILDGEVLPIIGIRSAHSEWFDYRAKYEDGGAEEKV-IELPPDIQQRVREAALASYQL 239

Query: 238 IGCRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + C+  +R D +            + LE+N  PGMT  S+FP+ AA AG +F ++L  ++
Sbjct: 240 LQCKVYARVDMILCQDMPLCQDMPYVLEVNTLPGMTANSLFPKSAAAAGMTFTQVLDRII 299

Query: 294 EDASCLR 300
             +   R
Sbjct: 300 ASSLHER 306


>gi|294792039|ref|ZP_06757187.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
 gi|294457269|gb|EFG25631.1| D-alanine--D-alanine ligase [Veillonella sp. 6_1_27]
          Length = 310

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLDGEIVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +   + P V+K    GSS+G+ +++ +  +   + ++    +   L++EQ++
Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V     P S  Y Y  KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D     ++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDASCLR 300
           +  AS  +
Sbjct: 302 LLTASIGK 309


>gi|217967341|ref|YP_002352847.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
 gi|217336440|gb|ACK42233.1| D-alanine/D-alanine ligase [Dictyoglomus turgidum DSM 6724]
          Length = 311

 Score =  176 bits (445), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 98/305 (32%), Positives = 180/305 (59%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++L + +   +AL+  G+   +I +D +V   +   K D+A    HG
Sbjct: 3   VGVLIGVKSSEKEIALKTARNIINALKLKGYDYIEIPIDENVVENIKKSKIDVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +LELL IPY  SG+LASAL++DKM +K++ +   +P      +++  +++
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKMMAKKIFTFHQIPTPKWKELSKKEIET 122

Query: 121 QHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           + L         +  P++IKP   GS++G+ ++ +++ +   +  +    + + +++E+Y
Sbjct: 123 RDLNEILKDLSYLKKPWIIKPATQGSTIGLSLVNQEEELLKGIELAF--QYDENIIVEEY 180

Query: 172 VDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + GIE+T G+              +PK+ FY Y+ KY+   S H++PA++P ++Y++ Q 
Sbjct: 181 IKGIEITAGIYDVNKPICLPLIEIIPKTGFYDYKTKYTPGLSDHIIPARLPKEVYEKAQG 240

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F +L+
Sbjct: 241 LGILAHQALGCRHLSRVDMIVEENTNNIYVLEVNTIPGMTETSLYPEAAKAFGIEFPDLI 300

Query: 290 LWMVE 294
              ++
Sbjct: 301 DNFIK 305


>gi|254416646|ref|ZP_05030397.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
 gi|196176612|gb|EDX71625.1| D-ala D-ala ligase N-terminal domain protein, putative [Microcoleus
           chthonoplastes PCC 7420]
          Length = 349

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 148/339 (43%), Gaps = 43/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S +A A AL        ++V  I + +                
Sbjct: 6   IGLLFGGRSGEHEVSICSAQAIAKALSTPPNTEKYEVLPIYIQKDGIWQPPDIAHQVLAS 65

Query: 46  -----------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                      L    P     ++ F +LHG  GEDG +Q +L L+++P   SG+L SA+
Sbjct: 66  GTPLEANGEGNLWQFPPQVADVEVWFPILHGPNGEDGTIQGLLTLMQVPCVGSGVLGSAM 125

Query: 90  SMDKMRSKQVVSSCGVP------------VCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           +MDK+  KQV    G+                  +  +     +  +  P  +KP   GS
Sbjct: 126 AMDKIAMKQVFDQVGLAQVKHKGLSRAQVWSNPCVFPKLCDQIEETLGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  ++    +   L  ++S++    +        +E       +    V       S
Sbjct: 186 SVGIAKVRSRSELETALDSAASYDRRIIVEAGVVAREVECAVLGNDNPKASVVGEISYTS 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY YE KY+   +T  +PA +P  + +++Q +A  A  A+   G+SR DF +   + +V
Sbjct: 246 DFYDYETKYTEGRATLSIPAPLPDSVSRQIQEMALQAFAAVDAAGLSRVDFFYVEATGEV 305

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG T  S++P++ A  G  F +L+  ++E A
Sbjct: 306 LINEVNTLPGFTATSMYPQLWAATGVPFPQLVDQLIELA 344


>gi|56459549|ref|YP_154830.1| D-alanine--D-alanine ligase [Idiomarina loihiensis L2TR]
 gi|81363518|sp|Q5R0N1|DDL_IDILO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56178559|gb|AAV81281.1| D-alanine-D-alanine ligase B [Idiomarina loihiensis L2TR]
          Length = 309

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 100/299 (33%), Positives = 147/299 (49%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV++GG S+ER+VSL SG A    L   G      D        L   K D  F  LHG
Sbjct: 9   VAVMLGGTSAERDVSLKSGMAVLKGLVAKGIDAHAFDPAAHSLQELVEQKFDRVFIALHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVN 114
             GEDG +Q  L++LE+PYT S +L  AL MDK+R KQ+  S G+P           +  
Sbjct: 69  RGGEDGSMQGALQILEMPYTGSDVLGCALGMDKVRCKQIWHSVGLPTANWRVVTQAEIEQ 128

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP + GSS+G+ +    +S+ L L    +    D LL+EQ+V+G
Sbjct: 129 VNVEAMLQELGGRVIVKPAREGSSIGMSIADNGRSLALAL--QHAAEFDDDLLVEQWVEG 186

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T G++   +L V  +  P    Y +E KY + ++ +  PA +  D    ++ LA  A
Sbjct: 187 AEYTIGILEGKALPVIRLQTPHEF-YDFEAKYQANDTQYHCPAGLSDDDEASLRTLAERA 245

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             AIG  G  R D + +    + F LE N  PGMT  S+ P  A  AG  F +L+  ++
Sbjct: 246 FAAIGGSGWGRIDVMRNNA-GEWFLLEANTVPGMTEKSLVPMAAKVAGLQFNDLVERIL 303


>gi|321314130|ref|YP_004206417.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
 gi|291482865|dbj|BAI83940.1| D-alanyl-alanine synthetase [Bacillus subtilis subsp. natto
           BEST195]
 gi|320020404|gb|ADV95390.1| D-alanyl-alanine synthetase A [Bacillus subtilis BSn5]
          Length = 361

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E  VSL +  A   AL    F +  I +      V                
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQ 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    +   D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 66  FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           G+LAS+  MDK+  K +           +  +    +          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLAQAKYAAFLKKDWTRSPKESCEQVEQELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ ++G E+        D    V  
Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF   
Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|269798172|ref|YP_003312072.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282850401|ref|ZP_06259780.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294793904|ref|ZP_06759041.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
 gi|269094801|gb|ACZ24792.1| D-alanine/D-alanine ligase [Veillonella parvula DSM 2008]
 gi|282579894|gb|EFB85298.1| D-ala D-ala ligase N-terminal domain protein [Veillonella parvula
           ATCC 17745]
 gi|294455474|gb|EFG23846.1| D-alanine--D-alanine ligase [Veillonella sp. 3_1_44]
          Length = 310

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 159/308 (51%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIESLGGEIVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTATSESFNGNLES 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +   + P V+K    GSS+G+ +++ +  +   + ++    +   L++EQ++
Sbjct: 126 AEAIIGHIRKQFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V     P S  Y Y  KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYTSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D     ++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHADN-MYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDASCLR 300
           +  AS  +
Sbjct: 302 LLTASIGK 309


>gi|228906016|ref|ZP_04069908.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
 gi|228853619|gb|EEM98384.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 200]
          Length = 364

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 154/344 (44%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50
            +L GG S+E +VSL +  A   AL    F++  I +      V           +  LK
Sbjct: 10  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDIEALK 69

Query: 51  ---------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 70  MSVAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 189

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 190 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTGEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|229017909|ref|ZP_04174789.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229024130|ref|ZP_04180599.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228737163|gb|EEL87689.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228743385|gb|EEL93505.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 304

 Score =  176 bits (445), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMITHLDKSKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMEDLK 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    I  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LEELDKIGFPLVVKPNSGGSSVGVKIVNDKNELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY  +++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAEIKERVNKASIACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 KVR 299


>gi|302388800|ref|YP_003824621.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199428|gb|ADL06998.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 364

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 160/347 (46%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S E EVSL S  +  +A++ + + +  I + +                    
Sbjct: 6   VGVVFGGQSGEYEVSLMSATSIINAMDKSKYDIVPIGITKDGRWHVFLGDVSKIQDGTWV 65

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  +      D+ F VLHG  GEDG VQ + EL+ IPY  
Sbjct: 66  DEAIPAFLPPDTGYKCAITLKDGIETRYHLDVIFPVLHGPHGEDGTVQGVFELMNIPYVS 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           SG+  SA+ MDK+ +K+++   G+PV    +  +  +           +     P  +KP
Sbjct: 126 SGVGPSAVCMDKVYTKKLLKQEGLPVVDFKVFYKKDLPHKLTEMVEEVEKSFGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI      + +   ++ ++      +LL+E+++   E+ C V+G+     +  
Sbjct: 186 ANLGSSVGITKAHDREELKNAIMHAA--EFDRKLLVERFIPAREIECSVLGNDDPVASVP 243

Query: 193 --AVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +P  +FYSY  KY     + + +PA +  +  ++++ LA  A++A+ C  ++R DFL
Sbjct: 244 GEIIPSEEFYSYTAKYFDGGKSKLLIPAPLAAEETEKIRNLAVRAYKALDCTVMARVDFL 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++   +  E+N  PG T +S++P++   +G  ++EL+  ++E A
Sbjct: 304 ISKITGVAYINELNTIPGFTKISMYPKLWEASGLPYKELIDRLIELA 350


>gi|167747289|ref|ZP_02419416.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|317471032|ref|ZP_07930407.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
 gi|167653267|gb|EDR97396.1| hypothetical protein ANACAC_02003 [Anaerostipes caccae DSM 14662]
 gi|316901473|gb|EFV23412.1| D-alanine-D-alanine ligase [Anaerostipes sp. 3_2_56FAA]
          Length = 350

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE EVS  S      +L++  + V  + + +    +L              
Sbjct: 5   IAVIFGGRSSEHEVSCVSAATVIRSLDEEKYNVILVGITKDGRWLLVDKLKEIEDGSWRE 64

Query: 50  ---------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG  GEDG +Q + E+ +IPY   
Sbjct: 65  SRVNAIISPDTEDKALVLLAEGTYRLQPVDVIFPVLHGLNGEDGTIQGLFEMAQIPYVGC 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V   G+     + + R  +          +  +S P  +KP +
Sbjct: 125 GVLASAVSMDKVYTKIIVEDLGIRQAQFVHIRRSDLTQMEDALDRAEAKLSYPMFVKPSR 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+G+   +  +++   L +++   H   +L+E+ + G E+ C V    +        
Sbjct: 185 AGSSVGVSKAEDREALSKALSKAA--EHDRNILVEETIVGREVECAVLGGKEIKASGVGE 242

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY Y+ KY++  S  ++   +P +  +E+++ A    +A+   G+SR DF    
Sbjct: 243 ILAAADFYDYDAKYNNQESKTLIDPPMPEETREEIRKSAAEIFKAVDGYGLSRVDFFI-A 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +V + EIN  PG T +S++P + A  G     L   ++  A
Sbjct: 302 ENGEVVFNEINTLPGFTSISMYPMLWAAQGIKTPALADELIRLA 345


>gi|198282522|ref|YP_002218843.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218665251|ref|YP_002424712.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
 gi|198247043|gb|ACH82636.1| D-alanine/D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           53993]
 gi|218517464|gb|ACK78050.1| D-alanine--D-alanine ligase [Acidithiobacillus ferrooxidans ATCC
           23270]
          Length = 308

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 110/299 (36%), Positives = 160/299 (53%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AVL GG S EREVSL SG A    L+  G     +D+  + +   +A     +AFNV H
Sbjct: 7   IAVLYGGPSGEREVSLDSGHAVLQTLQGLGMDAVGVDIQPAILQQQMAESGAQIAFNVCH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDGL+QA LE L++PYT SG+LASAL+MDK R KQ+  + G+PV   IL++R +  
Sbjct: 67  GAVGEDGLLQACLETLDMPYTGSGVLASALAMDKWRCKQLWRAAGLPVTDGILLHRGSHT 126

Query: 120 SQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                    P  IKP  GGSSLG+  +     +   L  + +    D++L E  V G E+
Sbjct: 127 PDLGARFGWPLYIKPNHGGSSLGVSKVGGPAELDAALQCAFAIE--DEVLCEGAVIGHEV 184

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G++   +L    I  P++  Y Y  KY + ++ ++LP+ +   + +++Q LA  A   
Sbjct: 185 TVGILDGQALPPIVIETPRAF-YDYTAKYLADDTRYLLPSGLGAPLEQQLQALALRAFAE 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +GCR   R DF+      +   LE+N  PGMT  S+ P  A   G  F EL   ++  A
Sbjct: 244 LGCRDWGRVDFMI-GGDGRPHLLEVNSVPGMTSHSLIPMAAKATGMGFPELCATILRTA 301


>gi|221133804|ref|ZP_03560109.1| D-alanine-D-alanine ligase B [Glaciecola sp. HTCC2999]
          Length = 321

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 155/300 (51%), Gaps = 8/300 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           A+L+GG S+EREVSL+SG+A   A++  G +    D  +     L   +   A  +LHG 
Sbjct: 7   AILLGGHSAEREVSLASGEAVFKAVQALGIECIAFDPKQHPLTKLIDEQVTHAMIMLHGR 66

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RF 116
            GEDG +Q  LE L IPYT SG+L SA++MDK+ +K V  +CG+P      +        
Sbjct: 67  GGEDGTIQGALEWLNIPYTGSGVLGSAIAMDKLHTKHVWQACGLPTAKYTEIKAPISVDE 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I P  ++KP   GSS+G+      + +   +  +    + +++LIEQY+ G E
Sbjct: 127 AQTIMLNIGPDLMVKPSHEGSSIGMSKTGTAEELISAVNTAL--TYDERVLIEQYIVGTE 184

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++G+ +L    +  P    Y YE KY +  + +  P+ +     + + +L+  A +
Sbjct: 185 YTVSILGENALPSISMVTPNIF-YDYEAKYQTNTTQYHCPSDLNDIDERVIGQLSLDAFK 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+ C G  R D + D  + +   LE+N  PGMT  S+ P+ A  AGY F EL+  ++  A
Sbjct: 244 AVSCNGWGRVDLMRDQKTDEFILLEVNTVPGMTAKSLVPKAAKQAGYDFNELVKQILVSA 303


>gi|196040387|ref|ZP_03107688.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196028872|gb|EDX67478.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 304

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIERYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|325474895|gb|EGC78081.1| D-alanine-D-alanine ligase [Treponema denticola F0402]
          Length = 368

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 153/355 (43%), Gaps = 57/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51
           +A++ GG SSE EVSL S  +    ++    K+  I + ++    L       +      
Sbjct: 3   IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D  F VLHG FGEDG +Q + E+ ++
Sbjct: 62  AVLKIKKDEAKRVTVIPGGGTKKGLKAGDDFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126
           PY    ++++++SMDK ++K +    G+P+ P I + +   D            +  +  
Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKKQDWDDPEKKKALLARAEKDLEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  IKP + GSS+G  ++K    +     +S  W++   +        +E +        
Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +    +P   FY YE KY+  N     +PA +     K ++  A  A++A+   G+SR
Sbjct: 242 AYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLSR 301

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ ++E A   R
Sbjct: 302 VDFFIDKRTGKIYLNEVNTIPGFTSISMFPKMCGASGLPYNELIMHLIELA-IDR 355


>gi|229030300|ref|ZP_04186352.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228731017|gb|EEL81947.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 311

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I +D  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPITLDEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGVETPDWIELTKMADLN 129

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 130 LDELDKLGFPLVVKPNSGGSSVGVKIVNDKDELISMLETVFEW--DSEVVIEKYIKGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY  +++   +  ++P ++ + V + +   ++A
Sbjct: 188 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAELKERVNKASLACYRA 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 246 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIQYSKLLDMIIETSL 303

Query: 298 CLR 300
            +R
Sbjct: 304 KIR 306


>gi|47567482|ref|ZP_00238194.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
 gi|47555884|gb|EAL14223.1| D-alanine--D-alanine ligase [Bacillus cereus G9241]
          Length = 361

 Score =  175 bits (444), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +  H          +  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDHETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|229028082|ref|ZP_04184233.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
 gi|228733235|gb|EEL84066.1| D-alanine--D-alanine ligase [Bacillus cereus AH1271]
          Length = 361

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 150/347 (43%), Gaps = 52/347 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R T +             +  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSTWEKDCETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A   
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELINLAIAR 350


>gi|226356915|ref|YP_002786655.1| D-alanyl-alanine synthetase A [Deinococcus deserti VCD115]
 gi|226318905|gb|ACO46901.1| putative D-alanine--D-alanine ligase [Deinococcus deserti VCD115]
          Length = 339

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 148/333 (44%), Gaps = 35/333 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44
           +L GG S E EVSL S ++  +AL    F V+ + + +                      
Sbjct: 7   LLAGGQSGEHEVSLMSARSVLAALPRDQFDVTPVVISKQGRWLPPTGTQKALETGEAPGG 66

Query: 45  -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                  V +    D  F +LHG  GEDG +Q +L L  IP+  SG+L SA+SMDK+ +K
Sbjct: 67  GDLVLHRVASAEGYDAVFPLLHGPMGEDGTIQGLLTLAGIPFVGSGVLGSAVSMDKVMTK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           QV++S G+      L  R                +  P  +KP   GSS+GI  +     
Sbjct: 127 QVLASAGIAQVEWRLALRREWRSQPEVVTARATELGFPLFVKPANLGSSVGISKVSHTDD 186

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207
           +   L  + S +    L         E+  G+                 S+FY YE KY+
Sbjct: 187 LQAALDLAFSLDRRVILEAMTSHKPREVEVGILGNDAPVASPVGELSFDSEFYDYETKYT 246

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +   +PA++P D+ + V+ +A  A +A+ C G++R DF +   + ++F  E+N  PG
Sbjct: 247 EGRAQMHIPARMPRDMSERVREMALQAFRALDCAGLARVDFFYVEETGELFLNEVNTMPG 306

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            T  S++P++   AG  + EL+  +V  A   R
Sbjct: 307 FTTTSMYPKLFEAAGIGYSELVTRLVTLALEER 339


>gi|299538056|ref|ZP_07051341.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
 gi|298726258|gb|EFI66848.1| D-alanine--D-alanine ligase [Lysinibacillus fusiformis ZC1]
          Length = 302

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 96/299 (32%), Positives = 161/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L+   ++V  I +D +  ++      D+A   LHG
Sbjct: 3   VGVIMGGTSSEKQVSIMTGKEMVAQLDKQKYEVVAITLDDNKEVIAKVGDIDVALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   GV     + + +     
Sbjct: 63  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKTMAKKILRYEGVATPDWVHLIKGEELP 122

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                L+  P V+KP  GGSS+G+ ++    ++   + +   W   ++ +IEQY+ G E+
Sbjct: 123 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRSALLAAITEVFKW--DNESIIEQYLIGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ +            + F+ Y+ K     ST   P ++PL I+  V + A ++++A
Sbjct: 181 TCPILNEQL-LPVLSIKHTAVFFDYQAK-YDDASTVEEPVELPLAIHDRVAKAAMISYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  ++E +
Sbjct: 239 LRCTVYARVDMLI--KDGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIESS 295


>gi|221308278|ref|ZP_03590125.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312600|ref|ZP_03594405.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317524|ref|ZP_03598818.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321800|ref|ZP_03603094.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. SMY]
          Length = 361

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 144/345 (41%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E  VSL +  A   AL    F +  I +      V                
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQ 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    +   D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 66  FEQGGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           G+LAS+  MDK+  K +           +  +    +        + +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ ++G E+        D    V  
Sbjct: 186 NLGSSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF   
Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 347


>gi|229173269|ref|ZP_04300816.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228610239|gb|EEK67514.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 304

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMADLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY  +++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDVSTIEEV-IELPAELKEHVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
             R
Sbjct: 297 KAR 299


>gi|78188875|ref|YP_379213.1| D-alanyl-alanine synthetase A [Chlorobium chlorochromatii CaD3]
 gi|123579964|sp|Q3AS55|DDL_CHLCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78171074|gb|ABB28170.1| D-alanine--D-alanine ligase [Chlorobium chlorochromatii CaD3]
          Length = 360

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 101/351 (28%), Positives = 164/351 (46%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+  GG S+E E+S+ S ++ A+ L+   F +  I +  S   +               
Sbjct: 6   VALFFGGQSAEHEISIISAQSIAAHLDTERFTLLPIYITHSGEWLCDGFARTLLTTNLAS 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                        LA L  D+AF  LHG+FGEDG +Q  LE   
Sbjct: 66  KLRGSSREETAAALQQMVRNAAQAPCNRNLAALGVDVAFLALHGSFGEDGRMQGFLETCG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127
           IPYT  G+LASAL+MDK  +K  V+  G+ V     +                +  +S P
Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAQGTNILSADYLANPNAVEASVEAQVSYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +   + +   L  +       ++++E  V G E+   V+G+A  
Sbjct: 186 LFVKPASLGSSIGISKVHNREELHPALQAAC--ALDWKVVVESTVKGREIEVAVLGNADP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +      P  +FY ++ KY   ++   +PA+IP  + +EV+R A  A++A+GC G++R
Sbjct: 244 IASVCGEIEPGKEFYDFQDKYMGNSAKLFIPARIPESLQEEVRRSALTAYRALGCSGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  +  V   E+N  PG T +S++P+M   +G S+R L+  ++E A
Sbjct: 304 VDFFVDESTNSVVLNEVNTIPGFTDISMYPQMMEASGISYRNLITRLLELA 354


>gi|332701304|ref|ZP_08421392.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332551453|gb|EGJ48497.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 306

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 101/295 (34%), Positives = 154/295 (52%), Gaps = 6/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           ++ GG S+EREVSLS       AL   G KV+++D       +L      D AF  +HG 
Sbjct: 5   LIAGGWSNEREVSLSGAAKIHEALLRLGCKVTRLDPAERFDDILELASGSDFAFINMHGT 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+LE ++ PY  SG  AS L+++K  +KQV +  G+P         R     
Sbjct: 65  PGEDGLVQAMLEQVDCPYQGSGPKASFLALNKACAKQVFARAGIPTPRWEYLPRRPQAGW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSSL +      + +   + +      G+ +L+E+ V+G E+T  
Sbjct: 125 STKLRFPLFVKPNMGGSSLDLCRADNAEELTPAIERIFC--RGETVLLEEGVNGQEVTSA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ +L +  I      F+ Y  KY+   +  + PA IP  I + VQ L+  AH+A+  
Sbjct: 183 ILGEKALPLILIQPAGCAFFDYRCKYTQGGAKEICPAPIPERIARRVQELSMRAHKAMKL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           RG SRSDF+      + + LE+N  PGMTP S+ P+ A  AG  F  L+  +++ 
Sbjct: 243 RGYSRSDFML--EGDEPYILEVNTLPGMTPTSLVPQAAHEAGLDFDALIKRLMDL 295


>gi|332978064|gb|EGK14802.1| D-alanine-D-alanine ligase [Desmospora sp. 8437]
          Length = 367

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 158/346 (45%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AVL GG S E  VSL S  +   A++     V  + ++                     
Sbjct: 7   VAVLFGGKSGEHAVSLQSAASVIQAMDPEKMDVFPVLINPEGKWQPGEYALPALEGKMEP 66

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  VL   + D+ F VLHG FGEDG +Q +LE+ +IPY  
Sbjct: 67  KLLEELGKRSTARDPLPVTTSLPVLKWEEIDVVFPVLHGTFGEDGTIQGMLEIADIPYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           +G+LASA+ MDK+  K++ +  G+P        R  ++          +   + P  +KP
Sbjct: 127 AGVLASAVGMDKVMMKKIFAQEGLPQGDFTFCLRRAIEQDIDTVISGIEAEFAYPCFVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   K  + +   L  ++   +  ++++E+++D  E+   V+G+     +  
Sbjct: 187 ANLGSSVGISKAKNREELKGALQLAA--RYDRKVIVEEFIDAREVEVAVLGNEEPVASVP 244

Query: 193 --AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V  +DFY Y  KY    S   +PA +P  + +E+  LA  A+Q I C G++R DF  
Sbjct: 245 GEIVSSNDFYDYRAKYIDGKSEMRIPADLPEPVLEEISGLALKAYQGIDCSGLARVDFFI 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                K+   EIN  PG TP S++  +  ++G S+ EL+  +++ A
Sbjct: 305 RKSDGKILINEINTMPGFTPFSMYANLWKHSGISYPELISRLIDLA 350


>gi|229161508|ref|ZP_04289489.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228622045|gb|EEK78890.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 304

 Score =  175 bits (444), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 85/303 (28%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+ + +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKSKYEIVPIMLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   GV     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNLSKKILRYEGVETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           ++    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LEELEKLGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPGEIKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG ++ +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQSSLLPKSADAAGINYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|49479200|ref|YP_036716.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330756|gb|AAT61402.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 304

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|253581417|ref|ZP_04858643.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
 gi|251836781|gb|EES65315.1| D-alanine-D-alanine ligase [Fusobacterium varium ATCC 27725]
          Length = 288

 Score =  175 bits (443), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 109/296 (36%), Positives = 157/296 (53%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV + ++       + D A+   H
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIENEYDFAYLAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L++L  PYT SG  AS ++MDK+ +K       +     + + +    
Sbjct: 63  GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDKIITK------KLAESVGVRIAKNYDK 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P VIKP   GSS+ I      +     +    +   G +++IE+ + G ELT 
Sbjct: 117 VADIDSYPVVIKPALEGSSVEIFFCYNREEAEKAV----AELKGKKIVIEEMITGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+           +PK++FY YE KY+   S H  PAKI    Y E    A   H  +G
Sbjct: 173 GVING-EGIGVLRIIPKNEFYDYESKYAEGGSIHEYPAKIDKKAYDEALENAVKVHNVLG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE 
Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285


>gi|228927668|ref|ZP_04090719.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228832012|gb|EEM77598.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 304

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY + ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDNASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|52842818|ref|YP_096617.1| D-alanyl-alanine synthetase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629929|gb|AAU28670.1| D-alanine-D-alanine ligase A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
          Length = 368

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 51/344 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44
            +L GG S E EVSL S  +    L+   + +  I +D+S                 + +
Sbjct: 12  VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 71

Query: 45  VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           V     P               + F V+HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 72  VTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 131

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  ++++    G+      L++          F  +       P  +KP   GSS+GI
Sbjct: 132 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 191

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192
                   +   +  +    + +++L+E+++ G E+          CG    + +   ++
Sbjct: 192 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 249

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA++   + +++++ A      + C+G++R DF  + 
Sbjct: 250 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 309

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 310 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 353


>gi|42527886|ref|NP_972984.1| D-alanyl-alanine synthetase A [Treponema denticola ATCC 35405]
 gi|81411504|sp|Q73JN2|DDL_TREDE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41818931|gb|AAS12903.1| D-alanine--D-alanine ligase [Treponema denticola ATCC 35405]
          Length = 368

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 153/355 (43%), Gaps = 57/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP----- 51
           +A++ GG SSE EVSL S  +    ++    K+  I + ++    L       +      
Sbjct: 3   IAIIYGGKSSEHEVSLQSASSIIRTIDK-KHKLHLIGISKNGAWYLHGDEERERIIKNEK 61

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D  F VLHG FGEDG +Q + E+ ++
Sbjct: 62  AVLKIKKDEAKRVTVIPGGGAKKGLKAGDEFLPTDAVFAVLHGRFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126
           PY    ++++++SMDK ++K +    G+P+ P I + R   D            +  +  
Sbjct: 122 PYVGGDVMSTSISMDKEKTKMIWDYSGLPIVPYIAIKRQDWDDPEKKKAILARAEKDLEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  IKP + GSS+G  ++K    +     +S  W++   +        +E +        
Sbjct: 182 PLFIKPCRAGSSVGAGMVKNRNELLEQAEESFLWDNKILVEACIEAREVECSVTGNTKTV 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +    +P   FY YE KY+  N     +PA +     K ++  A  A++A+   G+SR
Sbjct: 242 AYIPGEIIPTHKFYDYEAKYTDPNGAELKIPADLNETQRKTIRETAIKAYEALDLSGLSR 301

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF  D  + K++  E+N  PG T +S+FP+M   +G  + EL++ ++E A   R
Sbjct: 302 VDFFIDKRTGKIYLNEVNTIPGFTAISMFPKMCGASGLPYNELIMHLIELA-IDR 355


>gi|190359178|sp|Q5ZSA7|DDL_LEGPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 364

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 148/344 (43%), Gaps = 51/344 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44
            +L GG S E EVSL S  +    L+   + +  I +D+S                 + +
Sbjct: 8   VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67

Query: 45  VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           V     P               + F V+HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 68  VTEKSTPLEGLLINGRLAVDAKIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  ++++    G+      L++          F  +       P  +KP   GSS+GI
Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192
                   +   +  +    + +++L+E+++ G E+          CG    + +   ++
Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA++   + +++++ A      + C+G++R DF  + 
Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGIAYPDLLDELINLA 349


>gi|196032003|ref|ZP_03099417.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218903743|ref|YP_002451577.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|229122147|ref|ZP_04251362.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|195994754|gb|EDX58708.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|218538757|gb|ACK91155.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|228661273|gb|EEL16898.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
          Length = 304

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|169343210|ref|ZP_02864225.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
 gi|169298669|gb|EDS80748.1| D-alanine--D-alanine ligase [Clostridium perfringens C str.
           JGS1495]
          Length = 295

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 158/298 (53%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVEDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    +       PK  F+    KY    +   +  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDG-KMLPVLAIKPKGKFFDITSKYEDGGADEFI-VKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E+
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAARINMSFEELLDTIIEN 294


>gi|28210407|ref|NP_781351.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
 gi|39931117|sp|Q897P8|DDLA_CLOTE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28202844|gb|AAO35288.1| D-alanine--D-alanine ligase [Clostridium tetani E88]
          Length = 301

 Score =  175 bits (443), Expect = 7e-42,   Method: Composition-based stats.
 Identities = 97/299 (32%), Positives = 169/299 (56%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+S+E+E+S  +GK     L+ + +++  I ++    L+      + AF  LHG
Sbjct: 3   IGVVMGGVSTEKEISNLTGKYIIENLDKSKYEILPIPINTKFELIDKIKCLEFAFIALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---T 117
           NFGEDG VQA+LE + +PY+ SG+LAS+L MDK  SK+++   G+     I++ +     
Sbjct: 63  NFGEDGKVQALLETMGVPYSGSGVLASSLCMDKNMSKKILQGEGIKTPRWIMLYKNEDID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +S   I  P V+KP  GGSS+GI ++KK+Q +   +    ++   +++LIE+Y+ G E+
Sbjct: 123 FESIKNIGYPLVVKPNSGGSSIGITIVKKEQELIKAI--EEAFKFDEEILIEEYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC  M D           K +F++Y+ KY    +   + A + L++  +V++++    ++
Sbjct: 181 TC-CMLDGKPLPILSIKTKEEFFNYKAKYFEGVAEEKV-ADLSLELKDQVEKISNKCWKS 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +   R D +      +V+ +EIN  PGMT  S+FP+ A   G +F ELL  ++E +
Sbjct: 239 FKLKVYGRIDMII--KGNEVYVIEINTLPGMTKYSLFPKSAKAYGLNFSELLDKIIELS 295


>gi|288936910|ref|YP_003440969.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
 gi|288891619|gb|ADC59937.1| D-alanine/D-alanine ligase [Klebsiella variicola At-22]
          Length = 365

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +K ++     +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|228963329|ref|ZP_04124494.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
 gi|228796357|gb|EEM43800.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar sotto
           str. T04001]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSSAENAISPLSLSTEIIPSAASEENTIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|110798856|ref|YP_695965.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
 gi|110673503|gb|ABG82490.1| D-alanine--D-alanine ligase [Clostridium perfringens ATCC 13124]
          Length = 301

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|254723573|ref|ZP_05185360.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. A1055]
          Length = 377

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|118475993|ref|YP_893144.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis str. Al
           Hakam]
 gi|118415218|gb|ABK83637.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 367

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 13  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 72

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 73  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 132

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 133 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 193 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 250

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 251 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 309

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 310 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353


>gi|49476748|ref|YP_034572.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|196036015|ref|ZP_03103416.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196046155|ref|ZP_03113382.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218901438|ref|YP_002449272.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225862287|ref|YP_002747665.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228925491|ref|ZP_04088585.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931738|ref|ZP_04094639.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228944044|ref|ZP_04106428.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229089368|ref|ZP_04220644.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|229119901|ref|ZP_04249160.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|229182632|ref|ZP_04309878.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|49328304|gb|AAT58950.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|195991384|gb|EDX55351.1| D-alanine--D-alanine ligase [Bacillus cereus W]
 gi|196022900|gb|EDX61580.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB108]
 gi|218539969|gb|ACK92367.1| D-alanine--D-alanine ligase [Bacillus cereus AH820]
 gi|225785880|gb|ACO26097.1| D-alanine--D-alanine ligase [Bacillus cereus 03BB102]
 gi|228600840|gb|EEK58414.1| D-alanine--D-alanine ligase [Bacillus cereus BGSC 6E1]
 gi|228663558|gb|EEL19139.1| D-alanine--D-alanine ligase [Bacillus cereus 95/8201]
 gi|228693968|gb|EEL47655.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228815715|gb|EEM61952.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228827918|gb|EEM73651.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228834236|gb|EEM79779.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|229171080|ref|ZP_04298678.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
 gi|228612410|gb|EEK69634.1| D-alanine--D-alanine ligase [Bacillus cereus MM3]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +  +          +  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDYETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDSAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|120603688|ref|YP_968088.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
 gi|166198484|sp|A1VGU5|DDL_DESVV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120563917|gb|ABM29661.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris DP4]
          Length = 303

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 154/295 (52%), Gaps = 5/295 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+  +L      D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALRALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+          R   D 
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP  GGSSL +  + + + +   L    +     + ++E  + G+E+TCG
Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPALEAVFAHC--GEAIVEPAIPGVEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G 
Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E 
Sbjct: 243 RGYSRADYIL-RDDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIEL 296


>gi|157691220|ref|YP_001485682.1| D-alanyl-alanine synthetase A [Bacillus pumilus SAFR-032]
 gi|167012326|sp|A8FA55|DDL_BACP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157679978|gb|ABV61122.1| D-alanine--D-alanine ligase [Bacillus pumilus SAFR-032]
          Length = 360

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 142/342 (41%), Gaps = 48/342 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E  VSL +  A   AL    F +  I +      +                
Sbjct: 6   GLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRMLQ 65

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  A  K D+ F +LHG  GEDG +Q +LELL IPY  +G
Sbjct: 66  FEQNAKTFLPTSLNESMFPQPTSADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNG 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134
           +LASA  MDK+  K V +  G+     +  N+   +            ++  P  +KP  
Sbjct: 126 VLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATPDSLEQVEQVLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +      +  ++    +        IE+      +    V     
Sbjct: 186 MGSSVGISKCRSKEELQTAFDLAFQYDRRVVVEEGVVGREIEIGVLGNDEPKCSVVGEIA 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA +  D YK +  +A  A +++   G+ R+DF      
Sbjct: 246 PKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTEK- 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +  + G  + EL+  +V  A
Sbjct: 305 GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346


>gi|228937527|ref|ZP_04100169.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228970414|ref|ZP_04131069.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228976984|ref|ZP_04137392.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228782731|gb|EEM30901.1| D-alanine--D-alanine ligase [Bacillus thuringiensis Bt407]
 gi|228789300|gb|EEM37224.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228822138|gb|EEM68124.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326938016|gb|AEA13912.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 148/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           +LAS+  MDK+  K +           +  +               +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRQEAYSKVEDKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|229074283|ref|ZP_04207327.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
 gi|229094944|ref|ZP_04225947.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|229113898|ref|ZP_04243331.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228669559|gb|EEL24968.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-3]
 gi|228688477|gb|EEL42352.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-29]
 gi|228708835|gb|EEL60964.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-18]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 147/344 (42%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENSISPLSLSTEIIPSATSEEDAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           +LAS+  MDK+  K +           +  +               +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELESAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|229148633|ref|ZP_04276887.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
 gi|228634891|gb|EEK91466.1| D-alanine--D-alanine ligase [Bacillus cereus m1550]
          Length = 364

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 10  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 69

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 70  MSGAENAISPLSLSTEIIPAAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 189

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 190 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|229154005|ref|ZP_04282134.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228629526|gb|EEK86224.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 149/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +             +  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|228919170|ref|ZP_04082544.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228950766|ref|ZP_04112895.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228956668|ref|ZP_04118459.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|229041130|ref|ZP_04189890.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|229067989|ref|ZP_04201302.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|229077586|ref|ZP_04210228.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|229107906|ref|ZP_04237538.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|229125740|ref|ZP_04254769.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|229143030|ref|ZP_04271468.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|229176825|ref|ZP_04304227.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|229188504|ref|ZP_04315548.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228594967|gb|EEK52742.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10876]
 gi|228606717|gb|EEK64136.1| D-alanine--D-alanine ligase [Bacillus cereus 172560W]
 gi|228640438|gb|EEK96830.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST24]
 gi|228657713|gb|EEL13522.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-Cer4]
 gi|228675549|gb|EEL30761.1| D-alanine--D-alanine ligase [Bacillus cereus Rock1-15]
 gi|228705725|gb|EEL58069.1| D-alanine--D-alanine ligase [Bacillus cereus Rock4-2]
 gi|228715127|gb|EEL66990.1| D-alanine--D-alanine ligase [Bacillus cereus F65185]
 gi|228727212|gb|EEL78409.1| D-alanine--D-alanine ligase [Bacillus cereus AH676]
 gi|228803006|gb|EEM49833.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228808906|gb|EEM55396.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228840481|gb|EEM85748.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 364

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 10  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 69

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 70  MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 130 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 189

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 190 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 248 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 350


>gi|168207650|ref|ZP_02633655.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|168211769|ref|ZP_02637394.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
 gi|170661018|gb|EDT13701.1| D-alanine--D-alanine ligase [Clostridium perfringens E str.
           JGS1987]
 gi|170710279|gb|EDT22461.1| D-alanine--D-alanine ligase [Clostridium perfringens B str. ATCC
           3626]
          Length = 301

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|30018494|ref|NP_830125.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 14579]
 gi|206972242|ref|ZP_03233189.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218234279|ref|YP_002365072.1| D-alanyl-alanine synthetase A [Bacillus cereus B4264]
 gi|296501057|ref|YP_003662757.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
 gi|39931060|sp|Q81IU1|DDLB_BACCR RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|29894034|gb|AAP07326.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|206732816|gb|EDZ49991.1| D-alanine--D-alanine ligase [Bacillus cereus AH1134]
 gi|218162236|gb|ACK62228.1| D-alanine--D-alanine ligase [Bacillus cereus B4264]
 gi|296322109|gb|ADH05037.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis BMB171]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYSKVEDKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELEDAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|238893305|ref|YP_002918039.1| D-alanylalanine synthetase [Klebsiella pneumoniae NTUH-K2044]
 gi|238545621|dbj|BAH61972.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 365

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|206580748|ref|YP_002240164.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
 gi|206569806|gb|ACI11582.1| D-alanine--D-alanine ligase A [Klebsiella pneumoniae 342]
          Length = 365

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 65

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 350


>gi|152968896|ref|YP_001334005.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|262042385|ref|ZP_06015547.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|330006858|ref|ZP_08305734.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
 gi|150953745|gb|ABR75775.1| D-alanylalanine synthetase [Klebsiella pneumoniae subsp. pneumoniae
           MGH 78578]
 gi|259040293|gb|EEW41402.1| D-alanine-D-alanine ligase A [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|328535701|gb|EGF62146.1| D-ala D-ala ligase protein [Klebsiella sp. MS 92-3]
          Length = 376

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 76

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  RIALRPSTVTLAQIPGREAQQLINAESGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 254

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 314

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 315 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 361


>gi|218895357|ref|YP_002443768.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228898974|ref|ZP_04063252.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
 gi|218541748|gb|ACK94142.1| D-alanine--D-alanine ligase [Bacillus cereus G9842]
 gi|228860667|gb|EEN05049.1| D-alanine--D-alanine ligase [Bacillus thuringiensis IBL 4222]
          Length = 361

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|75760676|ref|ZP_00740702.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74491826|gb|EAO55016.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 367

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 13  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 72

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 73  MSSAENAISPLSLSTEIIPSAASEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 132

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LAS+  MDK+  K + +  G+         R   +          +  +  P  +KP  
Sbjct: 133 VLASSAGMDKVVMKNIFAEAGLTQAKYASFIRSAWEKDREEAYSKVEDKLGYPCFVKPAN 192

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +    +++       ++++E+ + G E+  GV    +    V   
Sbjct: 193 LGSSVGINKCKNREELENAFVEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 250

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 251 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIIAFQSLDGAGLTRADFFLT- 309

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 310 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 353


>gi|319654687|ref|ZP_08008766.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
 gi|317393603|gb|EFV74362.1| D-alanylalanine synthetase [Bacillus sp. 2_A_57_CT2]
          Length = 358

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 145/341 (42%), Gaps = 46/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VS+ +  A   AL+   F++  I +      V               
Sbjct: 5   VGLLYGGKSAEHKVSMQTAMAVIKALDLEKFEIHPIYISEEGQWVKGPQLQGPVSSVKEL 64

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG VQ +LELL +PY  +G+
Sbjct: 65  EFSQGEALPPTALAPTLFQGAQDKGPFDVIFPLLHGPNGEDGTVQGLLELLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKG 135
           LAS+  MDK+  K + +  G+P    +   R   +++           +  P  +KP   
Sbjct: 125 LASSAGMDKVIMKNIFAQAGLPQVKYVWFIRSEWENETEAAYDQVERELGYPCFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI        +     ++  ++    +        IE            V    VP
Sbjct: 185 GSSVGISKCMNRSELEEAFKEAFQFDRKIIIEEGVTAREIEAGVLGNDYPECSVAGEIVP 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K +FY Y+ KY   ++  ++PA+I    Y E++ +A  A +A+ C G+ R+DF       
Sbjct: 245 KVEFYDYKAKYEDGDTALIIPAEISEIEYSELRDMAIKAFKALDCSGLVRADFFLTRE-G 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           K++  E+N  PG TP S+FP +  + G  + +L+  +V  A
Sbjct: 304 KLYINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 344


>gi|110803915|ref|YP_698634.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
 gi|123047396|sp|Q0STC3|DDL_CLOPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110684416|gb|ABG87786.1| D-alanine--D-alanine ligase [Clostridium perfringens SM101]
          Length = 301

 Score =  175 bits (443), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--RDNVPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|320355011|ref|YP_004196350.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
 gi|320123513|gb|ADW19059.1| D-alanine--D-alanine ligase [Desulfobulbus propionicus DSM 2032]
          Length = 315

 Score =  175 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 162/304 (53%), Gaps = 13/304 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG 60
           A++ GG S EREVSL        AL+   ++V + D    +  + A     D+AF +LHG
Sbjct: 7   ALIAGGTSDEREVSLRGAAGVEQALDPDKYEVVRYDPATDLAKIAADAAHIDVAFLLLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GEDG +Q  L+LL IPY  +G+L SAL+MDK  +K +    G+PV P ++V       
Sbjct: 67  VHGEDGTIQGFLDLLGIPYQGAGVLGSALAMDKHLAKTMYKLHGLPVAPWVMVEAGDLAD 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           T      +  P V+KP++ GSS+G+ ++++ + +P  L  +    H +++++E Y+ G E
Sbjct: 127 TRRIVTEVGLPCVVKPVRQGSSIGMSIVREKEQLPAALRLAL--RHDNEVMVEAYIKGRE 184

Query: 177 LTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LT          A   +  I   + +F+ YE KY    S  + PA +  ++ ++ Q  A 
Sbjct: 185 LTAGVLGNAELTALPLIEIIPDARYEFFDYEAKYQPGASKEICPAPVSDEVRQKAQAYAM 244

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+++  RG SR+D +      +++ LE N  PGMTP S+ P+ AA AG  F  LL  +
Sbjct: 245 EAHRSLQLRGYSRTDMIL--AGDELYLLETNTIPGMTPTSLLPQAAAEAGIPFAALLDRL 302

Query: 293 VEDA 296
           V  A
Sbjct: 303 VALA 306


>gi|254426888|ref|ZP_05040595.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
 gi|196193057|gb|EDX88016.1| D-ala D-ala ligase N-terminal domain protein, putative [Alcanivorax
           sp. DG881]
          Length = 307

 Score =  175 bits (442), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 153/296 (51%), Gaps = 10/296 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER VSL SG A    L + G     +D        L     D AF  LHG
Sbjct: 16  VAVLAGGKSAERPVSLKSGAAVHQGLRNLGLIAELVDPADKSVETLK--GFDAAFIALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q +LE LEIPYT SG++ASA+ MDK+R+KQ+    G+P     +  R     
Sbjct: 74  RGGEDGVIQGVLEHLEIPYTGSGVMASAIGMDKVRTKQLWKGAGLPTPAFYVSGRD---- 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P ++KP   GSS+G+      + +   L+ +        +L+E +V+G E T  
Sbjct: 130 EADLGFPVIVKPAHEGSSIGMAKADNAEELAEALVAAE--KFDQDVLVEAWVNGPEYTVA 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    +  P +  Y +E KY S ++ ++ PA +     + +++LA  A +  GC
Sbjct: 188 VLGDEALPAIRLQTPHAF-YDFEAKYQSDSTEYLCPAGLDDADEQALRQLALTAFRVAGC 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG  R D + D    +   LE+N  PGMT  S+ P  A   G  F  L+  ++ DA
Sbjct: 247 RGWGRVDVMRDAQ-GQWQLLEVNTVPGMTDHSLVPMAAKATGRDFDVLVGEILLDA 301


>gi|30262595|ref|NP_844972.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47527903|ref|YP_019252.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185443|ref|YP_028695.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|165869190|ref|ZP_02213850.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167637851|ref|ZP_02396130.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170685118|ref|ZP_02876342.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|170704705|ref|ZP_02895171.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|177649494|ref|ZP_02932496.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190565429|ref|ZP_03018349.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227814575|ref|YP_002814584.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604698|ref|YP_002866914.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254685178|ref|ZP_05149038.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254722585|ref|ZP_05184373.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A1055]
 gi|254737629|ref|ZP_05195332.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254751944|ref|ZP_05203981.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Vollum]
 gi|254760465|ref|ZP_05212489.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Australia 94]
 gi|39930865|sp|Q81Q29|DDL_BACAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767719|sp|C3PB71|DDL_BACAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767720|sp|C3LHM9|DDL_BACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|30257227|gb|AAP26458.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Ames]
 gi|47503051|gb|AAT31727.1| D-alanine--D-alanine ligase [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179370|gb|AAT54746.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Sterne]
 gi|164715916|gb|EDR21433.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0488]
 gi|167514400|gb|EDR89767.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0193]
 gi|170130506|gb|EDS99367.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0389]
 gi|170670478|gb|EDT21217.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0465]
 gi|172084568|gb|EDT69626.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0174]
 gi|190563456|gb|EDV17421.1| D-alanine--D-alanine ligase [Bacillus anthracis Tsiankovskii-I]
 gi|227002556|gb|ACP12299.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229269106|gb|ACQ50743.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 304

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 153/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|228950414|ref|ZP_04112574.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228809229|gb|EEM55690.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 304

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|167631710|ref|ZP_02390037.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
 gi|254743190|ref|ZP_05200875.1| D-alanine--D-alanine ligase [Bacillus anthracis str. Kruger B]
 gi|167532008|gb|EDR94644.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0442]
          Length = 304

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 83/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG  Q  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTAQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|54298601|ref|YP_124970.1| D-alanyl-alanine synthetase A [Legionella pneumophila str. Paris]
 gi|148358653|ref|YP_001249860.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|296108257|ref|YP_003619958.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
 gi|81369792|sp|Q5X1S8|DDL_LEGPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198489|sp|A5IAW4|DDL_LEGPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|53752386|emb|CAH13818.1| D-alanine--D-alanine ligase A [Legionella pneumophila str. Paris]
 gi|148280426|gb|ABQ54514.1| D-alanine-D-alanine ligase A [Legionella pneumophila str. Corby]
 gi|295650159|gb|ADG26006.1| D-alanine-D-alanine ligase [Legionella pneumophila 2300/99 Alcoy]
          Length = 364

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 73/344 (21%), Positives = 149/344 (43%), Gaps = 51/344 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VGL 44
            +L GG S E EVSL S  +    L+   + +  I +D+S                 + +
Sbjct: 8   VLLYGGKSGEHEVSLVSAASVLKHLDSEKYHIIPIAMDKSGRFHRHDYNDLLACSDKLPV 67

Query: 45  VLAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           V     P              ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 68  VTEKSTPLEGLLINGRLAVDAEIVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  ++++    G+      L++          F  +       P  +KP   GSS+GI
Sbjct: 128 MDKDMARRLACINGLKSARYKLLSWHANASERQQFCHEVASEFGWPLFVKPCSLGSSVGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGVMGDASLDVTEI 192
                   +   +  +    + +++L+E+++ G E+          CG    + +   ++
Sbjct: 188 HKANNMDELNAAVADAL--RYDEEILVEEFIVGREIELAVLENSIPCGKPRVSMVGEIKV 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA++   + +++++ A      + C+G++R DF  + 
Sbjct: 246 NHPDGYYSYTAKYLESSQTDLIIPAQLNNSLEEQLKQAAANIFSYLKCKGMARVDFFVND 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++++ EIN  PG T +S++P++    G ++ +LL  ++  A
Sbjct: 306 KTEEIYFNEINTLPGFTSISMYPKLWQATGVAYPDLLDELINLA 349


>gi|52142884|ref|YP_083945.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
 gi|51976353|gb|AAU17903.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 304

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 152/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|52144996|ref|YP_081834.1| D-alanyl-alanine synthetase A [Bacillus cereus E33L]
 gi|51978465|gb|AAU20015.1| D-alanine--D-alanine ligase [Bacillus cereus E33L]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANTEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|282855332|ref|ZP_06264661.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
 gi|282586831|gb|EFB92070.1| vancomycin/teicoplanin A-type resistance protein VanA (VanA ligase)
           (D-alanine--D-lactate ligase) [Pyramidobacter piscolens
           W5455]
          Length = 355

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 152/345 (44%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE EVS  SG   A  ++   + +  I + +    +               
Sbjct: 7   VALLFGGQSSEHEVSCVSGATVARNIDREKYDLLLIGITKEGRWLHVDSTDQIASGEWRR 66

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      + D+ F VLHG +GEDG  Q I EL +IPY   
Sbjct: 67  GRRGAALLPDAALKSVLLSDGEKFSLARVDVLFPVLHGLYGEDGCPQGIAELAQIPYVGC 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLK 134
            +L+SA +MDK  +K V++ CG+P        R             +  +S P  +KP  
Sbjct: 127 DVLSSAATMDKATTKAVLARCGIPQARYAAFRREELDDMGGVVRRVESELSYPVFVKPSN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEI 192
            GSS G+        +   L  ++      +++ E+ + G EL C      DA       
Sbjct: 187 AGSSCGVSKAGSRAQLVEALKLAA--AQDCKVIAEETIVGRELECALLGGWDAEASGVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY Y+ KY S  S  V+   +P    +E++ +A    +A+ CRG+SR+DF  + 
Sbjct: 245 ILAGAEFYDYDAKYRSSASRTVVDPPLPPGKREEIRAMAKKIFRALDCRGLSRADFFLEK 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            + +V + EIN  PG T +S++P++   AG    EL+  ++E A+
Sbjct: 305 DTDRVVFNEINTIPGFTAISMYPKLWEAAGVPLPELVEKLIESAA 349


>gi|260587560|ref|ZP_05853473.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|331084215|ref|ZP_08333321.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
 gi|260541825|gb|EEX22394.1| D-alanine--D-alanine ligase [Blautia hansenii DSM 20583]
 gi|330402070|gb|EGG81643.1| hypothetical protein HMPREF0992_02245 [Lachnospiraceae bacterium
           6_1_63FAA]
          Length = 343

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 95/338 (28%), Positives = 157/338 (46%), Gaps = 48/338 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG S+EREVS++SG+    AL +   K   +D          +L P         
Sbjct: 3   IIVLAGGNSTEREVSIASGQGVCKALRERNHKAVLLDPYFGASQKEENLFPTEYDVDKAA 62

Query: 52  --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F  LHG  GEDG VQ++L+L+ I Y
Sbjct: 63  DAMREMSSKLEETMKTRKGFFGPNVLEICKEADIVFLALHGANGEDGKVQSVLDLMGIKY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGG 136
           T SG L+S ++MDK  +K V  + GVP    I        +  + + +  P ++KP  GG
Sbjct: 123 TGSGPLSSGMAMDKGITKMVFEAKGVPTPKGITLEKGKCSSQFADYGMGFPVIVKPCCGG 182

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+ +          LL++   ++ +++++EQ++ G E +  V+   +  V     P 
Sbjct: 183 SSVGVCIANNQTEYQAALLEAF--SYENEVVVEQFITGREFSVAVVDGKAYPVI-EIAPL 239

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY + +     PA +   + KE+Q+ A + ++A+  +  +R DFL D     
Sbjct: 240 QGFYDYKNKYQAGSCVETCPADLSSALTKEMQKYAEMGYKALNLQAYARLDFLMDDEGN- 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ LE N  PGMTP S+ P+ A   G  + +L   ++E
Sbjct: 299 MYCLEANTLPGMTPTSLIPQEAKAIGMDYPQLCEKLIE 336


>gi|324324244|gb|ADY19504.1| D-alanyl-alanine synthetase A [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|228983491|ref|ZP_04143701.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228776235|gb|EEM24591.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|222094005|ref|YP_002528056.1| d-alanyl-alanine synthetase a [Bacillus cereus Q1]
 gi|221238054|gb|ACM10764.1| D-alanine--D-alanine ligase [Bacillus cereus Q1]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEILK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|206977073|ref|ZP_03237973.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217957805|ref|YP_002336349.1| D-alanyl-alanine synthetase A [Bacillus cereus AH187]
 gi|229137075|ref|ZP_04265699.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|229194622|ref|ZP_04321419.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|206744722|gb|EDZ56129.1| D-alanine--D-alanine ligase [Bacillus cereus H3081.97]
 gi|217064959|gb|ACJ79209.1| D-alanine--D-alanine ligase [Bacillus cereus AH187]
 gi|228588843|gb|EEK46864.1| D-alanine--D-alanine ligase [Bacillus cereus m1293]
 gi|228646382|gb|EEL02592.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|42779346|ref|NP_976593.1| D-alanyl-alanine synthetase A [Bacillus cereus ATCC 10987]
 gi|42735261|gb|AAS39201.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 10987]
          Length = 361

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSTNAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|23098761|ref|NP_692227.1| D-alanyl-alanine synthetase A [Oceanobacillus iheyensis HTE831]
 gi|39930897|sp|Q8ERJ6|DDL_OCEIH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22776988|dbj|BAC13262.1| D-alanine-D-alanine ligase A [Oceanobacillus iheyensis HTE831]
          Length = 366

 Score =  175 bits (442), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 84/346 (24%), Positives = 146/346 (42%), Gaps = 51/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   + V  + +D+            ++    P 
Sbjct: 5   VGIVFGGKSAEHEVSLQSAKNIVDAIDSDKYDVYLLGIDKQGNWHVNDRSHYLINEEDPK 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 65  LISLNKTNEGIAVIPGAEKNQIVTSNSTKSLDQLDVIFPIVHGTLGEDGSLQGMLRMANI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V                   +  +  P  IK
Sbjct: 125 PFVGSSVLGSAISMDKDIAKRLLKDAGLKVAKGYAYRSVDKESIHFDSLKEELGLPMFIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++ ++     +  +  ++H   +        IE         +  V  
Sbjct: 185 PANQGSSVGVHKVENEEQFYSAIKDAFQFDHKLLVEEAIVGREIECAVLGNEKPAASVPG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             +P  DFYSYE KY         +PAK+   +   +Q +A  A +A+ C G++R D   
Sbjct: 245 EILPTGDFYSYEAKYIDETGAVLQIPAKLEEPVVDSIQDIALQAFKALNCEGLARVDVFL 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++   EIN  PG T +S++P++   +G S+REL+  ++E A
Sbjct: 305 T-DDNEIVINEINTLPGFTKISMYPKLWEESGVSYRELIENLIELA 349


>gi|196041059|ref|ZP_03108355.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
 gi|196027994|gb|EDX66605.1| D-alanine--D-alanine ligase [Bacillus cereus NVH0597-99]
          Length = 361

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|251772202|gb|EES52772.1| D-alanine--D-alanine ligase [Leptospirillum ferrodiazotrophum]
          Length = 323

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 108/302 (35%), Positives = 164/302 (54%), Gaps = 6/302 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S E E+S  SGKA A AL  AGF+V + + DRS+   L    PD+AF   HG
Sbjct: 14  VAVLAGGDSDEAEISRVSGKAVAEALRKAGFEVGEFEADRSLAKTLTDFSPDVAFLATHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G +Q  LE ++IPYT SG+LASA+ M KMRS+ +    G+ V  +         +
Sbjct: 74  GGGENGTLQGFLETMKIPYTGSGVLASAIGMSKMRSRALFRERGLAVPLTYAHRTEESFN 133

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              IS   PY++KP   GSS+G+  + + + +   + ++  ++H   +L+EQ + G E+ 
Sbjct: 134 PGYISFDPPYMVKPEAAGSSIGVKRVLRREDLADAVSEAGRYSHW--VLVEQLIPGREIQ 191

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
             ++    L   EI   K   FY+Y  KY    S H+ PA +  D   E+ R+   A + 
Sbjct: 192 SAILSGRYLGAIEIIPDKAEPFYTYASKYVPGGSRHISPAPLTPDESSELSRITIEACRV 251

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +  RG  R D + +        LEIN  PG+TP S+ PE+A++ G SF +L++ ++  AS
Sbjct: 252 LDVRGACRLDTILNDE-GVFVILEINTLPGLTPTSLLPEIASHEGLSFTDLIIELIATAS 310

Query: 298 CL 299
             
Sbjct: 311 LD 312


>gi|228912976|ref|ZP_04076620.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228846671|gb|EEM91679.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 361

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 151/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESSVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|182626611|ref|ZP_02954357.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
 gi|177908091|gb|EDT70664.1| D-alanine--D-alanine ligase [Clostridium perfringens D str.
           JGS1721]
          Length = 301

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/297 (30%), Positives = 151/297 (50%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  K+  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|152974076|ref|YP_001373593.1| D-alanyl-alanine synthetase A [Bacillus cereus subsp. cytotoxis NVH
           391-98]
 gi|189083031|sp|A7GKE0|DDL_BACCN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152022828|gb|ABS20598.1| D-alanine--D-alanine ligase [Bacillus cytotoxicus NVH 391-98]
          Length = 362

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 150/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            +L GG S+E +VSL +  A   AL    F++  I +                       
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQALQ 66

Query: 45  ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           ++           D+ F +LHG  GEDG VQ +LEL+ IPY  +
Sbjct: 67  MSGEANAISPVSLSTEIIPAPASKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGN 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPL 133
           G+LASA  MDK+  K + +  G+         R   +             +  P  +KP 
Sbjct: 127 GVLASAAGMDKVVMKNIFAEAGLNQAKYTSFVRSVWEKNREEAYEKVEEALGYPCFVKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191
             GSS+GI   K  + +     ++       ++++E+ + G E+  GV    D    V  
Sbjct: 187 NLGSSVGINKCKDREELEKAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDDPKCSVVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK +FY Y+ KY   ++  ++PA+I  +    +QR A  A QA+   G++R+DF   
Sbjct: 245 EIVPKKEFYDYKSKYIDGDTALIIPAEITEEETATIQRDAIRAFQALDGAGLTRADFFLT 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G S+ EL+  ++  A
Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLSYPELIEELIRLA 348


>gi|326790267|ref|YP_004308088.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541031|gb|ADZ82890.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 298

 Score =  175 bits (442), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/301 (27%), Positives = 148/301 (49%), Gaps = 8/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSE+EVSL SG+     +    ++   I +      +      D AF  LHG
Sbjct: 3   VGIIMGGISSEKEVSLKSGEEVLKHINKTKYEAIPIVLHSKKEAIDKLSGIDFAFLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QA+LE L+IPY+   +L SAL M+K  +K++++S  +     IL+      +
Sbjct: 63  RFGEDGTIQALLETLDIPYSGCRVLTSALCMNKHLTKKLLASENITTPKGILIKASEPLN 122

Query: 121 QHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   ++ P ++KP  GGSS+G   ++    +   +    ++ + ++LLIE+Y+ G E+
Sbjct: 123 SSITSTLNYPLIVKPNTGGSSIGTCKVENKTDLLSAI--DEAFKYDEELLIEEYIAGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+         I      F+ Y  KY+   +   +     + +  +V ++A      
Sbjct: 181 TSFVLDGEVFPTVCIKPRFGQFFDYNSKYTINGALEEIALLPSI-LQDKVTQIAEKIWAL 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             C+   R DF+    +  ++ LEIN  PG+T  S+ P+ A   G  F  L+  ++  + 
Sbjct: 240 FNCKSYCRIDFII--KNETIYVLEINTLPGLTETSLIPQSAKAKGIDFTTLIDAIIRTSM 297

Query: 298 C 298
            
Sbjct: 298 I 298


>gi|146310511|ref|YP_001175585.1| D-alanyl-alanine synthetase A [Enterobacter sp. 638]
 gi|145317387|gb|ABP59534.1| D-alanine--D-alanine ligase [Enterobacter sp. 638]
          Length = 366

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVIHGQLINAGNAQTLAQIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P +                  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRDQHSFAQITAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K             ++    ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVG--VSKVTSEAQFADAVRLAFEFDHKVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA +  +I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPAVLDPEINDKIRAIAIEAYQALGCGGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  V   EIN  PG T +S++P++   +G S+ EL+  ++E A
Sbjct: 304 FLTAEND-VIINEINTLPGFTNISMYPKLWQASGISYPELITRLIELA 350


>gi|168218188|ref|ZP_02643813.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
 gi|182379801|gb|EDT77280.1| D-alanine--D-alanine ligase [Clostridium perfringens NCTC 8239]
          Length = 301

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 152/297 (51%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V     ++   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWLMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  IKP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFIKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|229159399|ref|ZP_04287419.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
 gi|228624066|gb|EEK80872.1| D-alanine--D-alanine ligase [Bacillus cereus R309803]
          Length = 361

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 91/348 (26%), Positives = 151/348 (43%), Gaps = 53/348 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTEVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAEHAISPLSLSTEIIPSATSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   + +           +  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKERETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A   R
Sbjct: 304 QDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA-IDR 350


>gi|119513697|ref|ZP_01632695.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
 gi|119461646|gb|EAW42685.1| D-alanylalanine synthetase [Nodularia spumigena CCY9414]
          Length = 355

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 150/338 (44%), Gaps = 43/338 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+SS +A A AL        +++    + ++   +   +       
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIAKALSAEENASKYEILPFYIQKNGCWLAGEIPQQVLET 65

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F +LHG  GEDG +Q +L L+++P+  SG+L SAL
Sbjct: 66  GTPHLEDKNLNRWKLPEQVTQVDIWFPILHGPNGEDGTIQGLLTLMQVPFVGSGVLGSAL 125

Query: 90  SMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKGGS 137
            MDK+  K      G+P                 +  +   + +  +  P  +KP   GS
Sbjct: 126 GMDKIAMKMAFEQAGLPQVKYKALTRAEVWSNPCVFPKLCDEIEAALDYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  ++  Q +   L  +++++    +        +E            +       S
Sbjct: 186 SVGIAKVRSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDQTKASIVGEITFNS 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY YE KY+   +  ++PA IP  + +++Q +A  A  A+   G++R DF F   + ++
Sbjct: 246 DFYDYETKYTVGQADLLIPAPIPDAVSRQIQDMALQAFAAVDAAGLARVDFFFVEATGEI 305

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              EIN  PG T  S++P++ A +G  F EL+  +++ 
Sbjct: 306 LINEINTFPGFTATSMYPQLWAESGIPFPELVDRLIQL 343


>gi|118478002|ref|YP_895153.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
 gi|118417227|gb|ABK85646.1| D-alanine--D-alanine ligase [Bacillus thuringiensis str. Al Hakam]
          Length = 311

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 83/302 (27%), Positives = 150/302 (49%), Gaps = 9/302 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG 
Sbjct: 11  GVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGK 70

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTM 118
           +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +     
Sbjct: 71  YGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNMSKKILRYEGIETPDWIELTKMEDLNF 130

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+T
Sbjct: 131 DELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISTLETVFEW--DSEVVIEKYIKGDEIT 188

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C +               ++F+ Y  KY    +   +  ++P ++ + V + +   ++A+
Sbjct: 189 CSIFDG-KQLPIISIRHAAEFFDYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKAL 246

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C   +R D +        + +E+N  PGMT  S+ P+ A   G  + +LL  ++E +  
Sbjct: 247 KCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSAEAEGIDYSKLLDMIIETSLR 304

Query: 299 LR 300
           +R
Sbjct: 305 VR 306


>gi|238019067|ref|ZP_04599493.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
 gi|237864322|gb|EEP65612.1| hypothetical protein VEIDISOL_00929 [Veillonella dispar ATCC 17748]
          Length = 310

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 161/308 (52%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A ALE  G+    ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSKEAEVSRRTGAAIAEALESKGYNAQTLELNPRTVLKDIEALGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTAASESFNGNLES 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +   + P V+K    GSS+G+ +++ +  +   + ++    +   L++EQ++
Sbjct: 126 AEAIIEHIRKDFTIPVVVKSATQGSSIGVTIVRDEAQLEAAVTEAL--KYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V     P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVSVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISEEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVVRVDVMTDHAD-KMYVLEYNTVPGMTATSLVPKAAKEMGIDFPTLCEKI 301

Query: 293 VEDASCLR 300
           +  AS  +
Sbjct: 302 LLTASIGK 309


>gi|218289167|ref|ZP_03493403.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
 gi|218240750|gb|EED07929.1| D-alanine/D-alanine ligase [Alicyclobacillus acidocaldarius LAA1]
          Length = 383

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 152/359 (42%), Gaps = 63/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           + V+ GG S E EVSL S K+   AL+   +    I + +             L   +P 
Sbjct: 8   VGVIFGGKSGEHEVSLQSAKSVMDALDPLHYTTIPIGISKDGRWHVGKGAWKALEAKQPA 67

Query: 52  ---------------------------------------------DLAFNVLHGNFGEDG 66
                                                        D+ F VLHG FGEDG
Sbjct: 68  TLPSKGAQNTASPSKRFINPEIQGLSPVEVKRSPDWLPPALVNEIDVVFPVLHGTFGEDG 127

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------ 120
            +Q +LE++ IPY  SG+LASAL MDK+  KQ+ S+ G+P    +   R +         
Sbjct: 128 TIQGLLEMVGIPYVGSGVLASALGMDKIAMKQIFSAVGIPQARWVGFTRASWTQDDGRIV 187

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  +  P  +KP   GSS+GI   +  + +   +  + S++    +        IE+
Sbjct: 188 REIEEQLGYPCFVKPANLGSSVGISKARNQRELVESVHLALSYDRRVIVEEAIDAREIEI 247

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 D    V    VPK +FY YE KY    +   +PA +  +  K V+  A  A QA
Sbjct: 248 GILGNDDPIASVAGEIVPKREFYDYEAKYQDGGAELRIPADLSPEERKAVESYAIRAFQA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           I   G++R DF  +  + +V   EIN  PG T  S++P++   +G ++ +LL  ++E A
Sbjct: 308 IDGSGLARVDFFVERGTGRVLVNEINTMPGFTRFSMYPKLWEASGLAYDKLLDRLIELA 366


>gi|47568737|ref|ZP_00239433.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228988793|ref|ZP_04148866.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|47554631|gb|EAL12986.1| D-ala D-ala ligase [Bacillus cereus G9241]
 gi|228770938|gb|EEM19431.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 304

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IEQY+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEQYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDG-KQLPIVSIRHAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|296101501|ref|YP_003611647.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295055960|gb|ADF60698.1| D-alanyl-alanine synthetase A [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 366

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNANDPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVKGQLIDAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P +                  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNVAPFVTLTRANRDKYNFSQISAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTSEAQFTEAVRLAF--EFDHKVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA I   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDKGAQVVVPANIDPAINDKIRAIAINAYQALGCCGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + EL+  ++E A
Sbjct: 304 FLTP-DNEVVINEINTLPGFTNISMYPKLWQASGLGYSELITRLIELA 350


>gi|301051968|ref|YP_003790179.1| D-alanylalanine synthetase [Bacillus anthracis CI]
 gi|300374137|gb|ADK03041.1| D-alanylalanine synthetase [Bacillus cereus biovar anthracis str.
           CI]
          Length = 361

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 150/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLK 134
           +LASA  MDK+  K + +  G+         R   +          + ++  P  +KP  
Sbjct: 127 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSGWEKDRETAYEKVEEVLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKNREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA+   +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAERTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 347


>gi|228933903|ref|ZP_04096747.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825779|gb|EEM71568.1| D-alanine--D-alanine ligase [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 304

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 84/303 (27%), Positives = 154/303 (50%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYNKDELISMLETVFEW--DSEVVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 181 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|228992138|ref|ZP_04152074.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228767867|gb|EEM16494.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 304

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 156/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++   G+     I         
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEGIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QVR 299


>gi|18310297|ref|NP_562231.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931176|sp|Q8XKS9|DDLA_CLOPE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|18144977|dbj|BAB81021.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 301

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 88/297 (29%), Positives = 151/297 (50%), Gaps = 9/297 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+S+ SG +   AL+   ++   I ++    L+      D A   LHG
Sbjct: 3   VGVIMGGISSEREISIQSGNSVVHALDKDKYEAIPIVLNEKEDLIEKVKGIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQ++L+ L IP++  G L+SA+ MDK  +K++++   V      +   V+   
Sbjct: 63  KFGEDGTVQSVLKTLGIPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P  +KP  GGSS+   +++  +++   +    +  +  +++IE+Y+ G E+
Sbjct: 123 YEKIENLGYPVFVKPNNGGSSVATTLVESKEAVKDAV--LEALKYDTEVMIEEYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++    L V  I      F                  ++  D++KEV+++A   ++ 
Sbjct: 181 TCPIIDGKMLPVLAIKPKGKFFD--IASKYGDGGADEFIVELNEDLHKEVEKMALETYKL 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + C   +R D L        + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 239 LKCDVYARVDMLV--KDNIPYVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 293


>gi|254246417|ref|ZP_04939738.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
 gi|124871193|gb|EAY62909.1| D-alanine-D-alanine ligase [Burkholderia cenocepacia PC184]
          Length = 312

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 99/299 (33%), Positives = 152/299 (50%), Gaps = 10/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGVDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDLA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K      L    + +  H   +++E+ ++G
Sbjct: 132 ARATDIVTKLGLPLFVKPASEGSSVAVLKVKTAD--ALPAALAEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T  + GD  L +    VP  +FY Y  KY + ++ +++P  +P +   E++R+A  A
Sbjct: 190 GEYTACIAGDLDLPLI-KIVPAGEFYDYHAKYVADDTQYLIPCGLPAEQETELKRIARRA 248

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +GC    R+DF+ D      ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 249 FDVLGCTDWGRADFMLDAAGNA-YFLEVNTAPGMTDHSLPPKAARAVGIGYSELVVKVL 306


>gi|328952241|ref|YP_004369575.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
 gi|328452565|gb|AEB08394.1| D-alanine--D-alanine ligase [Desulfobacca acetoxidans DSM 11109]
          Length = 309

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 100/304 (32%), Positives = 164/304 (53%), Gaps = 13/304 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHG 60
           A+L GG SSEREVSL SG     AL+ A + + + D    +  ++      D+A  ++HG
Sbjct: 7   ALLSGGKSSEREVSLKSGGQVFEALDKAKYDIYRYDPQTDLRQLINDAPNLDVALIIMHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVNRF 116
            +GEDG +Q +L+LL +PY  SG++ASAL+M+K  SK +    G+ V      S      
Sbjct: 67  RWGEDGTIQGLLDLLGLPYQGSGVMASALAMNKELSKTLYRQAGLKVPRAVFFSRQDAID 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               +  +  P VIKP+  GSS+G+ V +    +   + ++    +  ++L+E+++ G+E
Sbjct: 127 PRALEAAVGLPAVIKPVNEGSSIGVTVARHLDQLGAGIGEAL--AYDRRVLVEEFISGME 184

Query: 177 LTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +T GV+G+ +      V  +      F++YE KY    +  ++PA++  ++   VQ    
Sbjct: 185 VTAGVLGNDALLPLPLVEIVPDKSHPFFNYEAKYLPGATEEIVPARLSPEMTIRVQECGL 244

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+GC G SR+D +      +++ LE N  PGMT  S+FP+ A   G  F  LL  +
Sbjct: 245 TAHRALGCWGYSRTDTIV--RDGEIYVLETNTIPGMTATSLFPQAARAMGLDFPALLDRL 302

Query: 293 VEDA 296
           VE A
Sbjct: 303 VELA 306


>gi|148657890|ref|YP_001278095.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
 gi|148570000|gb|ABQ92145.1| D-alanine--D-alanine ligase [Roseiflexus sp. RS-1]
          Length = 370

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 97/355 (27%), Positives = 157/355 (44%), Gaps = 59/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA---------HLKP 51
           + VL GG S E EVSL S +A    L+   + +  I + +    ++A            P
Sbjct: 7   VGVLFGGQSGEHEVSLVSARAIMDGLDPEKYDIIPIGITKQGRWIIAADAHARLLVQADP 66

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG  GEDG VQ 
Sbjct: 67  SKLPGGSISATTTASAGVGDQETTDPGTLIVAGEYSPLKTLDVIFPVLHGPMGEDGTVQG 126

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQ 121
           +LEL+ +PY   G+LASA+ MDK  +K   S  G+PV P +LV R              +
Sbjct: 127 LLELIGVPYVGCGVLASAVGMDKAMTKVAFSGAGLPVLPWLLVRRREWEHEPQRVLDWIE 186

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+G+  +    ++   + +++S++    +        IE++   
Sbjct: 187 SRLHYPMFVKPANLGSSVGVSKVTDRATLEQGIAEAASYDRRIIVEQGIPAREIEVSVLG 246

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +    V    +P  ++Y Y  KY S +S  ++PA I L++  +V+ LA  A +AI   
Sbjct: 247 NDEPEASVPGEVIPSGEWYDYAAKYLSGSSQILIPAPITLELAAQVRTLAVQAFKAIDGA 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DFL +  +  ++  EIN  PG TPVS++  M   +G  +  LL  +++ A
Sbjct: 307 GLARVDFLLNRETGDLYLNEINTMPGFTPVSMYAMMWDASGLPYTHLLDRLIDLA 361


>gi|296120283|ref|YP_003628061.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
 gi|296012623|gb|ADG65862.1| D-alanine/D-alanine ligase [Planctomyces limnophilus DSM 3776]
          Length = 338

 Score =  174 bits (441), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/301 (30%), Positives = 140/301 (46%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ER +SL SG+A   AL++ G  +  ID        +     D  F  LHG
Sbjct: 18  IALLAGGDSDERSISLRSGQAVCQALQERGHFILPIDPAIVSLKGMDWNGFDAVFIALHG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNR 115
            FGEDG VQ +LE   IPYT S   AS L+ DK  +KQ      VP              
Sbjct: 78  RFGEDGGVQTLLEESGIPYTGSSSQASRLAFDKRIAKQNFDRMQVPTPAWCELSPHESFD 137

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +     +  P VIKP   GSSLG+ ++++ + +     ++    + + L++E  + G 
Sbjct: 138 SLLMKAKELGWPVVIKPASQGSSLGVSIVRQPEQLQSAYERARH--YDEALIMEAAIVGS 195

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T G+  D  L          +F+ +  KY   ++ ++    +P    ++++     A 
Sbjct: 196 EWTVGLHDDEILPPIC-IETDREFFDWVAKYEDDHTRYIFDKPLPATCRQKLETACRGAV 254

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+G  GISR D + D      + LEIN  PG+T  S+ P+ A  AG+S  EL    +  
Sbjct: 255 HALGVTGISRVDLMLDSEGN-PWVLEINTIPGLTDHSLVPKAAQQAGWSLGELCEESIHR 313

Query: 296 A 296
           A
Sbjct: 314 A 314


>gi|237736134|ref|ZP_04566615.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
 gi|229421687|gb|EEO36734.1| D-alanine-D-alanine ligase [Fusobacterium mortiferum ATCC 9817]
          Length = 288

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 155/296 (52%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL SG A   +L+  G+    +DV  +++       + DLA+   H
Sbjct: 3   IAVFMGGISSEREVSLRSGAAILESLQAQGYDAYGVDVTEKNLVSAFTENEYDLAYIAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GE+G  Q +L++L  PYT SG + SA++MDK        +  V     I   +    
Sbjct: 63  GGYGENGTFQGLLDMLGKPYTGSGAMESAITMDK------AYTKAVANSVGIKTAKTYNC 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P V+KP + GSS+GI      + +   L        G + LIE+ + G ELT 
Sbjct: 117 VEEIKDFPVVVKPSRDGSSVGIYFCNTQEEVREAL----RALEGRKPLIEEMIQGEELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+           +PK+ FY YE KY++  S H  PAKI    Y +    A   H  IG
Sbjct: 173 GVLNG-EGLGVLRIIPKNKFYDYESKYAAGGSIHEYPAKIDKAAYDKAMENAVKIHNVIG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      +V++LE+N  PGMT  S+ P++    GY+F +L+  MV+ 
Sbjct: 232 LKGISRSDFML--KDGEVYFLEVNTCPGMTKTSLIPDLGTLKGYTFDDLVKIMVDT 285


>gi|119961736|ref|YP_948207.1| D-alanyl-alanine synthetase A [Arthrobacter aurescens TC1]
 gi|190359109|sp|A1R7J5|DDL_ARTAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119948595|gb|ABM07506.1| D-alanine--D-alanine ligase [Arthrobacter aurescens TC1]
          Length = 378

 Score =  174 bits (440), Expect = 1e-41,   Method: Composition-based stats.
 Identities = 92/363 (25%), Positives = 152/363 (41%), Gaps = 66/363 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  VS  +      A++   ++V  I + +S   VLA             
Sbjct: 15  VAILFGGRSSEHAVSCVTAAGVMGAIDKNKYEVIPIGIAKSGQWVLASGDTSEWSLSSAA 74

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG +GEDG +Q +LEL
Sbjct: 75  LPEVAPSGRTVTLAEVGGEHQLIVTEPNAVPQELGSVDVVFPLLHGPWGEDGTIQGLLEL 134

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISP 126
            +  Y  +G+LASA+ MDK   K V  S G+ V P + V      +           +  
Sbjct: 135 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLSVGPYVAVTDREWSTDAEAVRKRVDKLGF 194

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +   + +   + ++    H  +L+IE  + G E+ C V+    
Sbjct: 195 PVFVKPARAGSSMGISKVDSMEGLDAAIDEAR--RHDLKLVIEAGIVGREIECAVLQGRG 252

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
            D    ++P     +         +             PA +P +    V+ LA +A  A
Sbjct: 253 TDAPRTSMPGEIAVAVGEHQFYDFAAKYVEDGAAALSCPADMPDEAIARVRELAAVAFDA 312

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G ++ +L+  ++  A 
Sbjct: 313 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLAYGDLIDELIHLAL 371

Query: 298 CLR 300
             +
Sbjct: 372 TRK 374


>gi|229005687|ref|ZP_04163391.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228755621|gb|EEM04962.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
          Length = 304

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I         
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVVEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QIR 299


>gi|33151977|ref|NP_873330.1| D-alanine--D-alanine ligase [Haemophilus ducreyi 35000HP]
 gi|39930851|sp|Q7VMY2|DDL_HAEDU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33148199|gb|AAP95719.1| D-alanine-D-alanine ligase B [Haemophilus ducreyi 35000HP]
          Length = 303

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/300 (33%), Positives = 161/300 (53%), Gaps = 9/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL SG A   AL+  G+ V  ID        L        FN+LHG
Sbjct: 8   IAVLYGGTSQEREVSLHSGAAVTEALKSLGYNVEGIDTKDIAIEKLKEKGIQRVFNILHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----F 116
             GE+G++Q  LE + IPYT  G++ASA+++DK R+K + ++ G+P    ++V R     
Sbjct: 68  GIGENGVLQGALEQMGIPYTGCGVMASAITLDKFRTKLLWNAVGLPTADMVVVQRGQAID 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +S P  +KP   GSS+G+  +K  + +   +  +++      +L+E+++ G E
Sbjct: 128 INQIIAKLSLPVFVKPSSEGSSVGVFKVKTKEELLPAI--TAALEFDTIVLVEEFLTGAE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +  V+    L      +P  +FY Y  KY S  + +++P  +  +   EV ++   A+ 
Sbjct: 186 YSVPVLDGEVLPAV-QIIPDGEFYDYHAKYLSDKTQYIVP-ALTNERQAEVAKIVKAAYD 243

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCRG SR D + D  ++    +E+N  PGMT  SIFP+ AA  G SF +L+  ++E +
Sbjct: 244 VVGCRGWSRIDVMED-QNQNFRLVEVNTNPGMTSHSIFPKSAATMGISFEKLVERVLELS 302


>gi|229159072|ref|ZP_04287126.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
 gi|228624398|gb|EEK81171.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 4342]
          Length = 304

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 3   IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +    
Sbjct: 63  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLN 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IEQY+ G E+
Sbjct: 123 LDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEQYIKGDEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY   ++   +  ++P +I + V + +   ++A
Sbjct: 181 TCSILDGKP-LPIVSIRHAAEFFDYNAKYDDASTVEEV-IELPAEINERVNKASLACYKA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 239 LKCSVYARVDMMV--KDGIPYVMEVNTLPGMTRASLLPKSADAAGIHYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 RVR 299


>gi|72382711|ref|YP_292066.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. NATL2A]
 gi|123620894|sp|Q46JG5|DDL_PROMT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72002561|gb|AAZ58363.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL2A]
          Length = 348

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/341 (26%), Positives = 159/341 (46%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG SSE EVS+ S K   +AL        +    I +D+            +L  
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALRYLSNKERYIARPIYIDKYGYWHDYIFSESILFD 67

Query: 49  LK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K                     D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEERRINLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P I            +         +IS P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYISLNKPDIQNNLYMKSIYEQINKIISYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195
           S+GI      +     +  ++   + +++++E+ ++G EL CG+         V      
Sbjct: 188 SVGITKAYSKEEFIAGIEFAA--KYDERIIVEKSIEGRELECGILGKSIMKSSVVGEVKF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVANLIEIA 346


>gi|17228475|ref|NP_485023.1| D-alanyl-alanine synthetase A [Nostoc sp. PCC 7120]
 gi|22095559|sp|Q8YY71|DDL_ANASP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|17130326|dbj|BAB72937.1| D-alanyl-D-alanine ligase [Nostoc sp. PCC 7120]
          Length = 364

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 58/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS+SS +A ASAL      + +++    + +            VL  
Sbjct: 3   VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 62

Query: 49  LKP----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
             P                                  D+ F +LHG  GEDG +Q +L L
Sbjct: 63  GAPLLESSNSSPAENNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125
           ++ P+  SG+L SAL MDK+  K      G+P      V R  + S   +          
Sbjct: 123 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 182

Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP   GSS+GI  ++  Q +   L  +++++    +        +E      
Sbjct: 183 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIIEAGVAAREVECAVLGN 242

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                         SDFY YE KY++  +  ++PA IP DI +++Q +A  A  A+   G
Sbjct: 243 DQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAIIPDDISRQIQNMALQAFAAVDAAG 302

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF +   + +V   EIN  PG T  S++P++ A++G  F EL+  +V+ A
Sbjct: 303 LARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAHSGIPFPELVDKLVQLA 356


>gi|119478634|ref|ZP_01618537.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
 gi|119448411|gb|EAW29662.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2143]
          Length = 313

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 86/297 (28%), Positives = 142/297 (47%), Gaps = 5/297 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG ++ER VSL SG+A  +AL         +D      +     +    F  LHG
Sbjct: 19  VAVLLGGKTAERAVSLQSGEAILAALRAQNIAAEAVDTQDDSWIKTVAERYQHVFIALHG 78

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMD 119
             GE G VQ  L+ +++ YT SG++ASA+++DK+R K +     +P             D
Sbjct: 79  GDGEGGSVQGALDSIDVTYTGSGVMASAIALDKVRCKYLWRGMELPTPSFCELSINSHWD 138

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                    ++KP   GSS+G+ +      +        +  +   ++ EQ+V G E T 
Sbjct: 139 DIIRQWGKVIVKPASEGSSIGMAIATTGAELKGAY--EIASQYQGAVMAEQWVQGAEFTV 196

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++G  +L V  +       Y YE KY S ++ ++ P  +     +E++++A  A  ++G
Sbjct: 197 AILGKETLPVIRLETDHGF-YDYEAKYISTDTRYICPCGLSASQEQELKKMALDAFHSVG 255

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G  R DF+ D      F LE+N  PGMT  S+ P  A  A  +F EL+  ++  +
Sbjct: 256 CEGWGRVDFMQDESDN-FFLLEVNTVPGMTDHSLVPMAAKEASVNFEELVAEILRLS 311


>gi|290510033|ref|ZP_06549403.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
 gi|289776749|gb|EFD84747.1| D-alanine-D-alanine ligase [Klebsiella sp. 1_1_55]
          Length = 369

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     +              
Sbjct: 10  VGIVFGGKSAEHEVSLQSAKNIVEAIDKSRFDVVLLGIDKQGLWHINDAGNYLLNAQDPA 69

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 70  RIALRPSTVTLAQIPGREAQQLINADSGQPLAAIDVIFPIVHGTLGEDGSLQGMLRMANL 129

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 130 PFVGSDVLGSAACMDKDVTKRLLRDAGLAVAPFITLTRANRAQFSFADVEAKLGLPLFVK 189

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K ++     +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 190 PANQGSSVGVSKVKNEEQYHQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 247

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 248 CGEIVLNSEFYAYDTKYIDDQGAQVVVPAAIAPEINDKIRAIAVQAYQTLGCSGMARVDV 307

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 308 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLDYTSLITRLIELA 354


>gi|253579173|ref|ZP_04856443.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251849271|gb|EES77231.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 350

 Score =  174 bits (440), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 152/339 (44%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------DRS------------ 41
           + VL GG S+ER VS++SG     AL   G +   +D+       DR             
Sbjct: 3   IVVLAGGTSTERTVSITSGTGICKALRQKGHQAILVDIFCGIENVDRENPFPSEYDVDAA 62

Query: 42  ------VGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                     +  +K                  D+ F  LHG  GEDG VQA  +L+ I 
Sbjct: 63  SEYMSAFNDRIEQMKKERRSFFGPNVLKLCEAADIVFLGLHGANGEDGKVQATFDLMGIK 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKG 135
           YT +G L+SAL+MDK  +KQ+     VP    + + +  M +      +  P V+K   G
Sbjct: 123 YTGTGYLSSALAMDKGITKQMFLMNNVPTPRGVSMVKEEMTTDLKALGMEFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++         L  +   ++ +++++E+Y+ G E +  V+   +        P
Sbjct: 183 GSSVGVYIVNDQAEYEQALKDAY--SYENEVVVEEYIKGREFSVAVVDGKAY-PIIEIAP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY Y+ KY + ++    PA+I  ++ +++Q  A    +A+   G  R DF+    + 
Sbjct: 240 LQGFYDYKNKYQAGSTIETCPAEISPELTEKMQHYAEAGAKALFMEGYCRLDFMM-KENG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ A   G  +  L   ++E
Sbjct: 299 DMYCLEANTLPGMTPTSLIPQEAKVLGIDYPTLCEKLIE 337


>gi|159029500|emb|CAO87648.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 352

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 144/341 (42%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS++S ++   A         + V    +D++               
Sbjct: 6   VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65

Query: 46  -------------LAHLKPDL-----AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                        +    P++      F +LHG  GEDG +Q +L L+ + +  SG+L S
Sbjct: 66  GQPLAIESDIKVNIWQFPPEVSEIEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKG 135
            L MDK+  K   ++ G+P                 +  +        I  P  IKP   
Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +  Q +   L  ++S++    +        IE       +    +      
Sbjct: 186 GSSVGISKARNQQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   S+ V+PA IP  I  +V+ +A  A +A+   G+SR DF +   + 
Sbjct: 246 DSDFYDYETKYTDGRSSMVIPANIPDKIADQVREMAVEAFKAVDAAGLSRVDFFYVEKTG 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   EIN  PG T  S++P++    G  F +L+  +V+ A
Sbjct: 306 EVLINEINTLPGFTNFSMYPQLWKATGLEFDQLVDKLVQLA 346


>gi|308172324|ref|YP_003919029.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|307605188|emb|CBI41559.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens DSM 7]
 gi|328552135|gb|AEB22627.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens TA208]
 gi|328910407|gb|AEB62003.1| D-alanyl-D-alanine ligase A [Bacillus amyloliquefaciens LL3]
          Length = 361

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            ++ GG S+E  VSL +  A   AL    F +  I +                       
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVTKALNTDKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQ 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG +Q +LELL +PY  +
Sbjct: 66  LEQNGESFALSALNREMFPEASADEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+P        +              +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEEELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ + G E+        +       
Sbjct: 186 NLGSSVGISKCRNREELEKAFELAF--EYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA++  + Y E+  +A  A +AI   G+ R+DF   
Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 304 -NDGQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 347


>gi|283468520|emb|CAP18800.1| putative D-ala D-ala ligase [bacterium Ellin514]
          Length = 304

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 96/296 (32%), Positives = 148/296 (50%), Gaps = 6/296 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V++GG S+ REVSL +G A A AL   G +V ++D       + A    ++ F  LHG
Sbjct: 12  ITVMLGGPSAXREVSLRTGGAVAKALRSLGHRVDELDPKEKKWSLPAGT--EVVFLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ  L+ L IPYT     AS L  DK+ +KQ     GVP    ++    +   
Sbjct: 70  TYGEDGTVQRELDKLGIPYTGCDAEASRLGFDKILTKQKCVEAGVPTARFMIFESRSAVW 129

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP V+KP++ GSS+G+  + +       L ++    +  Q+L+E+ + G E T G
Sbjct: 130 PMGWQPPVVLKPVRQGSSVGLQFVDRVGDWSKKLAEAL--RYDTQVLMEERILGRETTVG 187

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++            PK+  Y Y+ KY++  + ++ PA     +   +Q  A  A +AIG 
Sbjct: 188 IL-GNRPLPIVEVRPKAGNYDYQNKYTAGATEYLCPAPFDEAVTARIQEAALGAFKAIGG 246

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R  S  D +  P + +   LE+N  PGMT  S+ P+ A  AG  + EL   MV+ A
Sbjct: 247 RDYSXVDVMVRP-NGEPVVLEVNTLPGMTETSLLPKAAMAAGIGYAELCQQMVDLA 301


>gi|315253166|gb|EFU33134.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
          Length = 291

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LEL+ +PYT SG++ASALSMDK+RSK +    G+PV P + + R   + 
Sbjct: 65  RGGEDGTLQGMLELMGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 121 ---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  +  + ++   L    ++ H +++LIE++
Sbjct: 125 GLSDKQLAEISALGLPVIVKPSREGSSVGMSKVVAENALQDAL--RLAFQHDEEVLIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++G+  L       P   FY YE KY S  + +  PA +       +Q L 
Sbjct: 183 LSGPEFTVAILGEEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             A   +GC+G  R D + D    + + LE N  PGMT  S+ P  A  AG
Sbjct: 242 LKAWTTLGCKGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAG 291


>gi|283468526|emb|CAP18807.1| putative D-ala D-ala ligase [Chthoniobacter flavus Ellin428]
          Length = 308

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 162/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV  +    +     D+AFNV+HG
Sbjct: 10  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDV--NGSDFIVPAGTDVAFNVIHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+  KQ      VP     ++       
Sbjct: 68  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIAKKQCFQKHHVPTAAFEILRDGA--- 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYV+K  K GSS+G+ ++++     +      +W++G +LL+E +++G ELT G
Sbjct: 125 NPTLPLPYVVKAPKEGSSVGVFIVRE--EAKVADTMREAWSYGKELLVEDFINGRELTVG 182

Query: 181 VMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           V+GD +L +      +      + Y +    +   + H  PA I  ++ + VQ +A  A 
Sbjct: 183 VLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAA 242

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI      R D L      + + LEIN  PGMT VS+ PE AA AG S+ EL   ++E 
Sbjct: 243 RAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIEL 301

Query: 296 ASCLR 300
           +   R
Sbjct: 302 SLARR 306


>gi|196230904|ref|ZP_03129765.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
 gi|196225245|gb|EDY19754.1| D-alanine/D-alanine ligase [Chthoniobacter flavus Ellin428]
          Length = 315

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 106/305 (34%), Positives = 163/305 (53%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG  SER+VSL+SG   A+AL   G  V+++DV  +    +     D+AFNV+HG
Sbjct: 17  IAVLMGGPGSERKVSLASGAGVANALRTLGADVTEVDV--NGSDFIVPAGTDVAFNVIHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +Q ILE   + YT  G+  S L++DK+ +KQ      VP     ++       
Sbjct: 75  TFGEDGQIQRILESRGVAYTGEGVANSELAIDKIATKQCFQKHHVPTAAFEILRDGA--- 131

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  PYV+K  K GSS+G+ ++++     +      +W++G +LL+E +++G ELT G
Sbjct: 132 NPTLPLPYVVKAPKEGSSVGVFIVRE--EAKVADTMREAWSYGKELLVEDFINGRELTVG 189

Query: 181 VMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           V+GD +L +      +      + Y +    +   + H  PA I  ++ + VQ +A  A 
Sbjct: 190 VLGDQALPIIEIKPAKDFYNFDNKYPFLNPKAGGAAEHTCPAMISDELTRRVQEVALAAA 249

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI      R D L      + + LEIN  PGMT VS+ PE AA AG S+ EL   ++E 
Sbjct: 250 RAIHLETYCRVDVLLTGA-GEPYVLEINTIPGMTQVSLLPEAAAAAGISYAELCARVIEL 308

Query: 296 ASCLR 300
           +   R
Sbjct: 309 SLARR 313


>gi|75906585|ref|YP_320881.1| D-alanyl-alanine synthetase A [Anabaena variabilis ATCC 29413]
 gi|123610777|sp|Q3MGA0|DDL_ANAVT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|75700310|gb|ABA19986.1| D-alanine--D-alanine ligase [Anabaena variabilis ATCC 29413]
          Length = 367

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 95/354 (26%), Positives = 153/354 (43%), Gaps = 58/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E EVS+SS +A ASAL      + +++    + +            VL  
Sbjct: 6   VGLLFGGRSGEHEVSISSARAIASALSAGENASKYEILPFYIHKDGRWLAGEAPQQVLKS 65

Query: 49  LKP----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
             P                                  D+ F +LHG  GEDG +Q +L L
Sbjct: 66  GAPLLESSNSSPADNNLVNSQQQTLERWQSPSQVAEVDVWFPILHGPNGEDGTIQGLLTL 125

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125
           ++ P+  SG+L SAL MDK+  K      G+P      V R  + S   +          
Sbjct: 126 MQTPFVGSGVLGSALGMDKIAMKMAFEQAGLPQVKYKAVTRAQIWSNPCVFPKLCDEIEA 185

Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP   GSS+GI  ++  Q +   L  +++++    +        +E      
Sbjct: 186 SLGYPCFVKPANLGSSVGISKVRSRQELEDALDNAANYDRRIIVEAGVVAREVECAVLGN 245

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                         SDFY YE KY++  +  ++PA IP +I +++Q +A  A  A+   G
Sbjct: 246 DQPQASTVGEITFNSDFYDYETKYTAGKADLLIPAVIPDEISRQIQDMALQAFAAVDAAG 305

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF +   + +V   EIN  PG T  S++P++ AY+G  F EL+  +V+ A
Sbjct: 306 LARVDFFYVEATGEVLINEINTLPGFTATSMYPQLWAYSGIPFPELVDKLVQLA 359


>gi|283468514|emb|CAP18790.1| putative D-ala D-ala ligase [Prosthecobacter dejongeii]
          Length = 306

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  SEREVS  + ++  +AL+  G +V ++DV      V A     +A N++HG
Sbjct: 9   IAVLFGGPGSEREVSKKTAESVIAALKTKGAEVVEVDVTGPDFDVPADAL--IAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QAILE   IPYT +G+ +S ++ DK +SK+   + GVP   S          
Sbjct: 67  TFGEDGQLQAILEERGIPYTGAGVESSRIAFDKAQSKERFVAAGVPTPRSQNYLLDGSQP 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              IS P V KP + GSS+G+ + + +      + ++     G   L+E++V+G ELT G
Sbjct: 127 L-DISIPLVSKPPREGSSVGVNICRTEAEWVSAIEEAKKC--GTSTLVEEFVEGKELTIG 183

Query: 181 VMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           ++GD  L +  I            Y     +  + +  PA +     + VQ  A  A ++
Sbjct: 184 ILGDQVLPIIHIEPVDGFYDMSNKYPWLNGTGKTHYHCPADLDEATTRRVQEAAMAAFKS 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G     R D +      + F LEIN  PGMT  S+ P+ A   G  F +L + ++E + 
Sbjct: 244 CGTEVYGRVDVML-RNDGEPFVLEINTIPGMTSSSLLPKAALAVGIEFPDLCVHIIELSL 302

Query: 298 CLR 300
             R
Sbjct: 303 AAR 305


>gi|308068770|ref|YP_003870375.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
 gi|305858049|gb|ADM69837.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Paenibacillus polymyxa E681]
          Length = 309

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 92/305 (30%), Positives = 163/305 (53%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--SVGLVLAHLKPDLAFNVL 58
           + V+MGGISSERE+SL +G+   + L+ + ++V  + +++   +   +     D+A   L
Sbjct: 3   IGVIMGGISSEREISLQTGQEMINHLDRSRYEVVPMVIEQRADLITQVQQAGIDIAMLAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG VQ  LE L IPYT SG+LAS+L M+K  SK ++ + GV     +       
Sbjct: 63  HGQYGEDGTVQGALETLGIPYTGSGVLASSLCMNKQLSKTLLKAAGVHTPAGLCWQGMDD 122

Query: 119 DSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++KP  GGSS+GI +++ ++ +   + ++   +    +LIE Y  G 
Sbjct: 123 YDPQVVERLGYPVIVKPNTGGSSIGIQLVQNEKELLPAVQEAC--SLDQAILIEPYYKGT 180

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+TC ++    L +  I+   S ++ Y+ KY    +   +  ++P  I + V+  A  ++
Sbjct: 181 EITCSIVDGEVLPIISISSAHSKWFDYKAKYEVGGAEEKV-VELPPVIEQRVREAALASY 239

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           + + C+  +R D +      + + LE+N  PGMT  S+ P+ AA AG +F +LL  ++  
Sbjct: 240 RLLQCKVYARVDMILCQ--DRPYVLEVNTLPGMTANSLLPKSAAAAGITFTQLLDHIIAS 297

Query: 296 ASCLR 300
           +   R
Sbjct: 298 SLHER 302


>gi|29376797|ref|NP_815951.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256960856|ref|ZP_05565027.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|2506340|sp|Q06893|VANB_ENTFA RecName: Full=Vancomycin B-type resistance protein VanB; AltName:
           Full=D-alanine--D-lactate ligase; AltName: Full=VanB
           ligase
 gi|460078|gb|AAC43217.1| D-alanine:D-alanine ligase-related protein induced by vancomycin
           [Enterococcus faecalis]
 gi|1209531|gb|AAB05627.1| D-Ala:D-Lac ligase [Enterococcus faecalis]
 gi|29344262|gb|AAO82021.1| D-alanine--D-lactate ligase [Enterococcus faecalis V583]
 gi|256951352|gb|EEU67984.1| vancomycin B-type resistance protein vanB [Enterococcus faecalis
           Merz96]
 gi|741410|prf||2007289A D-Ala lactate ligase
          Length = 342

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ +    F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AIFSPDRKTHGLLVMKEREYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++ +        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+  ++PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P MAA AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMAAAAGITLPALIDSLITLA 339


>gi|194015885|ref|ZP_03054500.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
 gi|194012240|gb|EDW21807.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus pumilus ATCC
           7061]
          Length = 360

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 142/342 (41%), Gaps = 48/342 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E  VSL +  A   AL    F +  I +      +                
Sbjct: 6   GLIYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWLRGEKLTEPVSNVRMLQ 65

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                  A  K D+ F +LHG  GEDG +Q +LELL IPY  +G
Sbjct: 66  FEQSAKTFLPTSLNESMFPQPASADEKIDVVFPLLHGPNGEDGTMQGLLELLNIPYVGNG 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLK 134
           +LASA  MDK+  K V +  G+     +  N+   +            ++  P  +KP  
Sbjct: 126 VLASAAGMDKVMMKDVFAQAGLAQAKHLSFNKKDYEKATADSLEQVEQVLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +      +  ++    +        +E+      +    V     
Sbjct: 186 MGSSVGISKCRSKEELQTAFDLAFQYDRRVVVEEGVVGRELEIGVLGNDEPKCSVVGEIA 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA +  D YK +  +A  A +++   G+ R+DF      
Sbjct: 246 PKTDFYDYKAKYEDGDTDLIIPASVSEDEYKTIHDMAIKAFKSLDGSGLVRADFFLTEK- 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +  + G  + EL+  +V  A
Sbjct: 305 GEVLINEVNTMPGFTPFSMFPLLWKHTGVEYPELIEKLVSLA 346


>gi|317489232|ref|ZP_07947749.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325832243|ref|ZP_08165242.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|316911633|gb|EFV33225.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|325486079|gb|EGC88533.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 313

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 116/303 (38%), Positives = 172/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 12  VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----R 115
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+P  PS+ +      
Sbjct: 72  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGIPTPPSVPLQKGDSY 131

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +++   +I   + ++       ++L+E+Y+ G 
Sbjct: 132 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAIEKAFDI--DSEVLVERYIKGK 189

Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V+GDA ++       VPKSDFY +E KY+   S H+ PA +  +  + VQ LA  
Sbjct: 190 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 249

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+ C G+SRSDF+        + LE N  PGMT  S+ P+ A  AG SF EL   ++
Sbjct: 250 AHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 308

Query: 294 EDA 296
             A
Sbjct: 309 GYA 311


>gi|257470795|ref|ZP_05634885.1| D-alanine--D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|317064999|ref|ZP_07929484.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
 gi|313690675|gb|EFS27510.1| D-alanine-D-alanine ligase [Fusobacterium ulcerans ATCC 49185]
          Length = 288

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 111/296 (37%), Positives = 156/296 (52%), Gaps = 14/296 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSEREVSL+SGKA   +L   G+    IDV + ++       + D A+   H
Sbjct: 3   IAVFMGGISSEREVSLNSGKAILESLLKQGYDAYGIDVTKENLVSAFIDNEYDFAYLAFH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG VQ +L++L  PYT SG  AS ++MDK      V +  +     + V +    
Sbjct: 63  GGFGEDGRVQGLLDMLGKPYTGSGAEASGIAMDK------VITKKLAESAGVRVAKNYDK 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P VIKP   GSS+GI      +       +      G +++IE+ + G ELT 
Sbjct: 117 VSDIDSYPVVIKPALEGSSVGIFFCHNREEAEKAAGELV----GKKIVIEEMITGDELTV 172

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+           +PK++FY YE KY+   S H  PAKI    Y E    A   H  +G
Sbjct: 173 GVING-EGIGVLRIIPKNEFYDYESKYAEGGSVHEYPAKIDKKAYDEALENAVKVHNVLG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             GISRSDF+      KV++LE+N  PGMT  S+ P++A   GY++ +++  MVE 
Sbjct: 232 LAGISRSDFIL--KDDKVYFLEVNTLPGMTKTSLIPDLATLKGYTYDDVVRIMVET 285


>gi|251790921|ref|YP_003005642.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
 gi|247539542|gb|ACT08163.1| D-alanine/D-alanine ligase [Dickeya zeae Ech1591]
          Length = 366

 Score =  173 bits (439), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG SSE EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P +             D    +  P  +K
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHAYGDLTAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +    +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEFDHAVELAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N       +PA +  D+++ ++ +A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMNDDVHQHIRDIALRAFQALDCRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DNQVVVNEVNTLPGFTNISMYPKLWEASGIGYTALITQLIELA 350


>gi|71898201|ref|ZP_00680375.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
 gi|71731940|gb|EAO33997.1| D-alanine--D-alanine ligase [Xylella fastidiosa Ann-1]
          Length = 320

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRRRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +L SALSMDK+R+KQV  + G+P            
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  Q     
Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 258 FH-SVGCRGWGRVDVMREHGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|146329245|ref|YP_001209868.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
 gi|190359128|sp|A5EY21|DDL_DICNV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146232715|gb|ABQ13693.1| D-alanine-D-alanine ligase [Dichelobacter nodosus VCS1703A]
          Length = 310

 Score =  173 bits (438), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 110/298 (36%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG SSERE+SL  G+A  +AL  AG     +D  D +    L       AF +LH
Sbjct: 10  VAVLYGGNSSEREISLIGGRAVHAALCAAGIDAHLLDTGDPNRIWTLKDEHFSRAFVMLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +QAIL+ L IPYT S +LA AL+MDK+  K+V  S G+PV   +LV   +  
Sbjct: 70  GRGGEDGEIQAILQWLGIPYTGSRVLACALAMDKVVCKKVWQSAGLPVLADVLVTPESRF 129

Query: 120 S---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               + L    +VIKP   GSS+G+  +K  + +   +  +       +++ E ++ G E
Sbjct: 130 ETLVEQLHCQDFVIKPALEGSSVGVSRVKNQEQLAAAIPFAGGARA--KIMAEPWIVGRE 187

Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT G++ D  L   EI       FY Y+ KY + N+ ++ PA I   +    + +AF A 
Sbjct: 188 LTYGIVNDTVLPAIEIVAGNDHDFYDYDAKYHAANTQYLCPAPIDAALDARCREIAFAAF 247

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           QAIG RG  R D + D    + + LEIN+ PGMT  S+ P  A   G  F  L+  ++
Sbjct: 248 QAIGARGWGRVDMIVDAQ-NRPYLLEINLVPGMTTHSLVPMAAQQIGMDFSALVQSIL 304


>gi|270260868|ref|ZP_06189141.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
 gi|270044352|gb|EFA17443.1| D-alanine--D-alanine ligase A [Serratia odorifera 4Rx13]
          Length = 367

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIEASSAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ V P +                  +  P  IK
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRTNRGKYGFDQLSERLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        L  +   +   ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVQDRAGFDAALALAF--SFDHKVLVESAIVGREIECAVLGNDEPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      V+PA+I  ++  +++ +A  A +A+ C G++R D 
Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAKVVVPAEIAPEVSDKIRDVALKAFRALECFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++ A +G S+ EL+  ++E A
Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSELITRLIELA 350


>gi|256827807|ref|YP_003151766.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
 gi|256583950|gb|ACU95084.1| D-alanine--D-alanine ligase [Cryptobacterium curtum DSM 15641]
          Length = 313

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 108/304 (35%), Positives = 166/304 (54%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S ERE+SL+SG+  A AL+ AGF+V  +D   +     L     D+AF  LH
Sbjct: 10  VALLAGGTSDEREISLASGRGAADALQQAGFQVKVLDPAKKDDLAQLVSQPFDVAFLCLH 69

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  LE + +PY   GI +SA +MDK+++K      G+P   SI ++R    
Sbjct: 70  GRGGEDGAIQGFLETIGLPYIGPGIWSSATAMDKVKAKVFYREFGIPTPQSITLHRNESV 129

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +I+   ++   L ++      + +LIE ++ G 
Sbjct: 130 DAATVIAQLGNHLVVKPATEGSALGVSIIEGPSALDRALTEAFKL--DNAVLIETFMAGT 187

Query: 176 ELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+G+ +     V EI     +FY +E KY++  S H+ PA++  +    VQ++A 
Sbjct: 188 ELTVAVIGNENASALPVIEIVPQLGEFYDFESKYAADGSQHICPARLTDEQTTAVQQVAV 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+GC G+SRSD +        + LE N  PGMT  S+ P+    AG SF +L   +
Sbjct: 248 QAHKALGCCGVSRSDVIL-AADGTPWVLETNTIPGMTATSLLPDAGRAAGMSFPQLCTRL 306

Query: 293 VEDA 296
           +E A
Sbjct: 307 IELA 310


>gi|78187190|ref|YP_375233.1| D-alanyl-alanine synthetase A [Chlorobium luteolum DSM 273]
 gi|123582897|sp|Q3B391|DDL_PELLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78167092|gb|ABB24190.1| D-alanine--D-alanine ligase [Chlorobium luteolum DSM 273]
          Length = 361

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 109/349 (31%), Positives = 171/349 (48%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG S E E+S+ S +A A+ ++   ++V  + + R  G                 
Sbjct: 6   VALLFGGRSLEHEISVISARAVAANIDRDRYRVLAVYITRDGGWYAGGVAEQILKLDIAD 65

Query: 46  -------------LAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                        L                   D+AF VLHG++GEDG VQ +LE L++P
Sbjct: 66  LIRTTSLEATAATLREMVAASAEPPFNFDFRGIDVAFPVLHGSYGEDGRVQGLLETLQVP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129
            T  G+LASAL+MDK  +K   +  G+ V  S+ V                   +S P  
Sbjct: 126 CTGCGVLASALTMDKALTKLAAADAGLAVAVSVTVMSHAYRRDPEATHRLAVASLSFPMF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP+  GSS+GI  +  +  +   +  +   +   ++LIEQ V G E+   V+G+ +L+ 
Sbjct: 186 VKPVSLGSSVGITKVNSESELAEAITHAC--SLDSKVLIEQAVKGREVEVAVIGNDTLEA 243

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +      P S+FY YE KY    +   +PA+IP D+ ++V+  A  A++A+GCRG+SR D
Sbjct: 244 SPCGEIEPGSEFYDYEDKYIHDTAKLFIPARIPGDLQEKVREAALCAYRALGCRGMSRVD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  D  +  + + EIN  PG TPVS++P + A AG  F EL   ++  A
Sbjct: 304 FFVDETTGSIVFNEINTIPGFTPVSMYPRLMAAAGTGFMELTDRLIRLA 352


>gi|269792853|ref|YP_003317757.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
 gi|269100488|gb|ACZ19475.1| D-alanine/D-alanine ligase [Thermanaerovibrio acidaminovorans DSM
           6589]
          Length = 316

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 148/303 (48%), Gaps = 11/303 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG 60
           V  GG S EREVSL SG+A   AL   G+ V  +D D  + +V   L    DL F  LHG
Sbjct: 5   VAYGGDSPEREVSLRSGEAVKEALSSLGWTVEGLDADSPLRVVERALSGAFDLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L+   IPYT     A    MDK  ++ V+ + GV V   I  +      
Sbjct: 65  GWGEDGTLQCLLDTHRIPYTGPRWGACMACMDKEITRGVLLARGVRVPEGIPFDGSMDQG 124

Query: 121 QHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             L         V+KP + GS++GI ++     +   L ++    +  +L++E++++G E
Sbjct: 125 VLLELLRRWGRLVVKPCRCGSTVGIGIVDHPSRLDRALDEAF--RYDRRLVVERFIEGRE 182

Query: 177 LTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           LT  V           T    P+S FY Y  KY+   + ++ PA +     + V R A  
Sbjct: 183 LTVAVFDTPEGPKALPTVEIRPRSGFYDYSSKYTKGMTEYLCPAPLSEQEAEAVARAAVE 242

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A++A+GC   SR D   +  + +   LE+N  PGMT  S+ P+ A   G+ F E+L  + 
Sbjct: 243 AYRAMGCSVYSRVDVRLEEGTGEPRVLEVNTAPGMTSTSLVPKAANAFGWDFPEMLRRIC 302

Query: 294 EDA 296
           E +
Sbjct: 303 EAS 305


>gi|238927323|ref|ZP_04659083.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
 gi|238884605|gb|EEQ48243.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas flueggei ATCC
           43531]
          Length = 785

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 164/310 (52%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGGAILQALLSKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ------VVSSCGVPVCPSILV 113
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+      + +   +    S   
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKITAKRVLAAEGIPTPRCMSFYASERT 598

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                + +   S P V+K  + GSS+G+ ++  D+ +   L  +    +GD++L+E+Y++
Sbjct: 599 EHTPQEIRAAFSLPLVVKAPEQGSSIGVYIVAADKELVPALDAAF--TYGDEVLVEEYIE 656

Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G EL+  V G      +         S  Y YE KY+    TH++PA I  +  +EV++L
Sbjct: 657 GRELSVVVWGSPAAAEVMPIIEIEVPSGRYDYESKYTPGGVTHLVPAPISAECRREVEQL 716

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+ A GC G++R D L      + + +E+N  PGMT  S+ P+ A   G  F EL  
Sbjct: 717 ARRAYAACGCNGLARVDLLLSAE-NQPYVIELNAVPGMTETSLVPDAARAVGIDFPELCE 775

Query: 291 WMVEDASCLR 300
            ++  A   R
Sbjct: 776 KILALAGYHR 785


>gi|18309801|ref|NP_561735.1| D-alanine--D-alanine ligase [Clostridium perfringens str. 13]
 gi|39931177|sp|Q8XM71|DDLB_CLOPE RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetaseB
 gi|18144479|dbj|BAB80525.1| D-alanine-D-alanine ligase [Clostridium perfringens str. 13]
          Length = 302

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/299 (30%), Positives = 157/299 (52%), Gaps = 8/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + ++MGGISSEREVSL+SG++  + ++   ++VS+I ++  + ++      D A   LHG
Sbjct: 3   VGIIMGGISSEREVSLASGESIFNHIDKEKYEVSKIIINNKIDILEKVKGLDFALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            FGEDG VQA L++++IPY+  G L+S+L MDK  SK+V+ +  +     I    +    
Sbjct: 63  KFGEDGTVQAFLDIMDIPYSGCGALSSSLCMDKNLSKKVLKAENIRTAKWITVKSIEEID 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P  +KP  GGSS+    + K + I   +       + ++++IE ++ G E+
Sbjct: 123 YEKIEEIGYPVFVKPNNGGSSVATFKVYKKEDIKNSV--MEGLKYDEEVIIESFIKGREI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +              K+DFY Y+ +  + N    LP ++   +Y EV+ +A    + 
Sbjct: 181 TCPIFNGEL-FPILEIKSKADFYDYK-QKYAANGAEHLPVQLEKSLYDEVKEMALKTFEV 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D +        + LE+N  PGMT  S+FP+ A   G S+ + +  ++E +
Sbjct: 239 LKCEVYARVDMIISEE-GVPYILEVNTLPGMTATSLFPQSAESRGISYSKFIDLIIETS 296


>gi|257792839|ref|YP_003183445.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|257476736|gb|ACV57056.1| D-alanine/D-alanine ligase [Eggerthella lenta DSM 2243]
          Length = 307

 Score =  173 bits (438), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 115/303 (37%), Positives = 171/303 (56%), Gaps = 10/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL+S +    ALE+AG+ V+Q+D  D+     L     D+AF  LH
Sbjct: 6   VALLAGGKSGEREVSLASAEGAREALEEAGYTVTQLDPADKEDLKRLIDGPFDVAFLCLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----R 115
           G +GEDG VQ +LE + +PY  SG+ +SAL+MDK++SK      G+   PS+ +      
Sbjct: 66  GKYGEDGTVQGLLETIGLPYIGSGVWSSALAMDKVKSKLYYEQAGILTPPSVPLQKGDSY 125

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    V+KP   GS+LG+ +++   +I   + ++       ++L+E+Y+ G 
Sbjct: 126 DVDSIVEKLGTHCVVKPGTEGSALGVFIVEGAAAIGEAIEKAFDI--DSEVLVERYIKGK 183

Query: 176 ELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V+GDA ++       VPKSDFY +E KY+   S H+ PA +  +  + VQ LA  
Sbjct: 184 ELTVAVIGDAEVEALPIIEIVPKSDFYDFESKYAPGGSQHLCPAPLSDETTRMVQELAVR 243

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH+A+ C G+SRSDF+        + LE N  PGMT  S+ P+ A  AG SF EL   ++
Sbjct: 244 AHRALSCEGVSRSDFIL-EEDGSCWTLETNTIPGMTGTSLLPDAARAAGISFPELCTRLI 302

Query: 294 EDA 296
             A
Sbjct: 303 GYA 305


>gi|298489811|ref|YP_003719988.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
 gi|298231729|gb|ADI62865.1| D-alanine/D-alanine ligase ['Nostoc azollae' 0708]
          Length = 351

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 148/340 (43%), Gaps = 44/340 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S +  A+AL        +++    + +                
Sbjct: 6   VGLLFGGRSGEHEVSIISARGIANALSAEENSHKYEIMPFYIQKDGFWQAGEVAQQVLTS 65

Query: 46  ------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       L    P     DL F +LHG  GEDG +QA+L L+++P+  SG+L SA
Sbjct: 66  GVAKEHPGNRANLWQFPPQTAEIDLWFPILHGPNGEDGTIQALLTLMQVPFVGSGVLGSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKGG 136
             MDK+  K   +  G+P      + R  + S   +              PY +KP   G
Sbjct: 126 TGMDKIAMKTAFAQAGLPQVKYKALTRAQIWSNPCVFPKLCDEIEATLGYPYFVKPANLG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  ++  Q +   L  +++++    +        +E       +    V       
Sbjct: 186 SSVGIAKVQSRQELEAALDNAATYDRRIIVEAGVVAREVECAVLGNDNPKASVIGEITFD 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDFY YE KY+   +   +PA +P    +++Q  A  A  A+   G++R DF +   + +
Sbjct: 246 SDFYDYETKYTQGKADLFIPAHLPESAVQQIQEKALQAFTAVDAAGLARVDFFYVEATGE 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S++P++ A  G SF +L+  +++ A
Sbjct: 306 ILINEINTLPGFTSTSMYPQLWANTGISFPKLVDQLIQLA 345


>gi|313895994|ref|ZP_07829548.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
 gi|312975419|gb|EFR40880.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           137 str. F0430]
          Length = 776

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 166/310 (53%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           +AV+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 470 IAVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 529

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+           T  
Sbjct: 530 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 589

Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +         S P V+K  + GSS+G+ ++ ++  +   L ++   ++G ++L+E+++ 
Sbjct: 590 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDEAF--SYGGEVLVEEFIA 647

Query: 174 GIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V G+               S  Y YE KY+   S H++PA I  +   EVQ L
Sbjct: 648 GRELTVVVWGETGHAEALPVIEITTTSGRYDYESKYTPGASAHLVPAPISPECTAEVQEL 707

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L  
Sbjct: 708 AVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLCE 766

Query: 291 WMVEDASCLR 300
            ++E A   R
Sbjct: 767 KILEMAGYQR 776


>gi|46578750|ref|YP_009558.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|81567261|sp|Q72F80|DDL_DESVH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46448162|gb|AAS94817.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232618|gb|ADP85472.1| D-alanine/D-alanine ligase [Desulfovibrio vulgaris RCH1]
          Length = 303

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/295 (33%), Positives = 154/295 (52%), Gaps = 5/295 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSER+VSL+  +    AL   G  V+  D   S+  +L      D AF  LHG+
Sbjct: 5   LIAGGWSSERDVSLAGARGIEKALCALGHDVTWFDPATSLDGLLEAASSHDFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+L+    PY  SG   S L+++K  SKQ++   G+          R   D 
Sbjct: 65  PGEDGLVQAMLDTAGCPYQGSGPAGSFLALNKAVSKQLLRRHGILTPDWAFLAARPAADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP  GGSSL +  + + + +   L    +     + ++E  + G+E+TCG
Sbjct: 125 EPGLGYPLFVKPNTGGSSLCLSRVTQPEGLAPALEAVFAHC--GEAIVEPAIPGVEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I   +  F+ Y  KY+   +T + PA +P ++   VQ +   AH+ +G 
Sbjct: 183 VLGDTALPPILIRPAEGAFFDYTSKYTPGGATELCPAPLPAEVTAHVQDVTLRAHRLLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           RG SR+D++       +F LE+N  PGMTP S+ P+ AA  G  F  L+  ++E 
Sbjct: 243 RGYSRADYIL-RDDGALFLLEVNTLPGMTPTSLVPQEAAAIGLDFPALIARLIEL 296


>gi|226311631|ref|YP_002771525.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
 gi|226094579|dbj|BAH43021.1| D-alanine--D-alanine ligase [Brevibacillus brevis NBRC 100599]
          Length = 375

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 91/349 (26%), Positives = 152/349 (43%), Gaps = 54/349 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            ++ GG SSE EVSL +  +   A++   ++V+ + V      V                
Sbjct: 9   GIIYGGKSSEHEVSLRTAMSIMQAVDANKYEVTPVYVQLDGSWVTGETLAGQLPDKIEAL 68

Query: 46  -LAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
            L+   P                            D+ F V+HG FGEDG +Q +LEL  
Sbjct: 69  RLSAKTPVSNEATETGQELAVTSKSGSLFAMNEQMDVVFPVVHGPFGEDGTIQGLLELAN 128

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127
           IPY  +G++ASA+ MDK   K V +  G+P    + + R              +  +  P
Sbjct: 129 IPYVGTGVMASAVGMDKWMMKTVFAQAGLPQVKYVGLLRSQWEKGQDDVMDRIERELGYP 188

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI   K  + +   L  ++ ++    +     V  +E+      +   
Sbjct: 189 CFVKPANMGSSVGINKAKNREELKHALDVAAKFDRRLIVEEFVQVRELEIGVLGNEELMT 248

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V    +   +FY YE KY    +   +PA +P  + +++  +A  A QA+   G+SR D
Sbjct: 249 SVVGEVIAAKEFYDYEAKYKGAGTELSIPAIVPEHVSEQIAEIAKQAFQALDGSGLSRVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F +D  + K++  E+N  PG TP S++P +   AG  + EL+  +V+ A
Sbjct: 309 FFWDEKNDKLYINEVNTMPGFTPFSMYPMLFQAAGVGYSELIDRLVQLA 357


>gi|254967029|gb|ACT97550.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 348

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 50/345 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRSVGLVLAHLK 50
           +AVL GG SSER+VSLS+G   A AL + G  V  +D           +      L    
Sbjct: 3   IAVLCGGRSSERDVSLSTGIQVARALRETGHDVVLVDACVDFPLDCRPEEVFEKALPIEN 62

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ FN LHG+ GE+G +QA+ +LL I Y
Sbjct: 63  HAIGAAAPCVERFFDRASGFFGKNVLEICKSADIVFNALHGDEGENGKLQAVFDLLNICY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKG 135
           T SG     L+M+K  SKQ+  + G+P   +++++         +      P V+KP   
Sbjct: 123 TGSGAQGCMLAMNKSLSKQLFRTHGIPTPEAVILSESDKCRAAELCEKLGLPCVVKPASL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++        L  + S  H   +++E+Y+ G E   G++G   L      +P
Sbjct: 183 GSSVGVSIVRTIDEFFTALDSAFSLEH--TVIVEKYIKGREFAVGIVGSRVLPAI-EIIP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  FY Y+ KY    +  + PA I  D  + +        + +G    +R+DF+ D    
Sbjct: 240 KHGFYDYKNKYQPGCTVEICPADIDSDTAERMAEATRKVFRVLGLGAYARADFMVDE--N 297

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            ++ LE N  PGMTPVS+ P+ AA     F  LL  +++++  LR
Sbjct: 298 GIYCLEANTLPGMTPVSLLPQEAAADKLDFPALLEAIIKESLLLR 342


>gi|124026431|ref|YP_001015546.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
 gi|166198498|sp|A2C472|DDL_PROM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123961499|gb|ABM76282.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. NATL1A]
          Length = 348

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 159/341 (46%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG SSE EVS+ S K   +AL        +    + +D+            +L  
Sbjct: 8   IGVVFGGKSSEHEVSIKSAKTIYNALSHLSNKERYVARPVYIDKYGYWHDYIFSESILYD 67

Query: 49  LK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K                     D+ F  LHG  GEDG++Q + +    P+  SG+L SA
Sbjct: 68  KKDHLIFEDRRVNLTNLSNMEDIDVWFPCLHGPNGEDGVIQGLFKSTGKPFVGSGVLGSA 127

Query: 89  LSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           L MDK+  K V  S  +P  P +            +         +I+ P  IKP   GS
Sbjct: 128 LGMDKIAMKSVFKSYNLPQVPYVSLNKADIQNNLYMKSIYEQINKIINYPCFIKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVP 195
           S+GI      +     +  ++   + +++++E+ ++G EL CGV         V      
Sbjct: 188 SVGITKAYSKEEFITGIEFAA--KYDERIIVEKSIEGRELECGVLGKSIMKSSVVGEVKF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++D+Y+YE KY++  S+ ++PA + ++I  ++Q+LA  A +AI   G++R DF +   ++
Sbjct: 246 QTDWYTYESKYNANLSSTIIPADLNIEISNKIQKLAIEACKAINAYGLARVDFFYQESTQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 QIYINEVNTLPGFTKTSMYPTLWEASGLKLEKLVASLIEIA 346


>gi|78059985|ref|YP_366560.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
 gi|77964535|gb|ABB05916.1| D-alanine--D-alanine ligase [Burkholderia sp. 383]
          Length = 342

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 102/334 (30%), Positives = 159/334 (47%), Gaps = 38/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS----------VGLVLAHLK 50
           +AVL GG S ER+VS+SS      AL  AG  V  ID  R           +   +    
Sbjct: 8   IAVLFGGASEERDVSISSAAQVIKALRSAGHSVVAIDTARGPLSPEEDALLLTSRIHDAP 67

Query: 51  P------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           P                        D+AF  LHG  GEDG +QA+L+L  +PYT SG + 
Sbjct: 68  PPSRVSTRSPSAAFDLLRCRELTEADVAFLALHGGTGEDGTIQAMLDLAGVPYTGSGHMG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++M+K  +K++ SS G+     +++     D    +  P ++KP + GS++G+ ++  
Sbjct: 128 SAIAMNKDMTKRLFSSVGIRTPRWMMLPCDFDDIPRRVGYPLIVKPNRQGSTVGLSLVHT 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +       Q+++EQY+ G ELT GV+G  +L V EI +     + Y  KY
Sbjct: 188 PDELESAVRLAR--RFDTQVMVEQYIAGRELTVGVLGAQALSVGEIVIEPGTIFDYRSKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            + +     PA +P    +  QR+A  AH  +   G SR+D   D     ++ LE+N  P
Sbjct: 246 QAGHVLEQFPATLPAATLEAAQRIALRAHALLELDGYSRTDLRLDAQ-GILWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           GMT  S+ P+ AA +G +F +L   +   A   R
Sbjct: 305 GMTATSLLPQSAAASGIAFPQLCEQIC-LAGINR 337


>gi|297584141|ref|YP_003699921.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
 gi|297142598|gb|ADH99355.1| D-alanine/D-alanine ligase [Bacillus selenitireducens MLS10]
          Length = 359

 Score =  173 bits (437), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 87/342 (25%), Positives = 155/342 (45%), Gaps = 51/342 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E +VSL + KA  +AL+   ++V  I +  +   +                
Sbjct: 6   GLVYGGKSAEHQVSLQTAKAVINALDFEQYEVHPIYITVTGRWIRGQELTSTIEDASLLK 65

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG +Q +LE+L+IPY  +G+
Sbjct: 66  FEEGKEISPTSLNQSVFPSYESEERPFDIIFPLLHGPNGEDGTIQGLLEMLDIPYVGNGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR---------FTMDSQHLISPPYVIKPLKG 135
           LAS+  MDK+  K + +  G+     +   R              + ++  P  +KP   
Sbjct: 126 LASSAGMDKVMMKNIYAHAGIRQPAYVWYTRPNYEKDTEAACQHVEEVLGFPCFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIA 193
           GSS+GI      Q +      +   ++  ++++E+ +DG E+        +    V    
Sbjct: 186 GSSVGISKASNRQELVQAFQTAF--DYDRKVIVEEGIDGREVEIAVLGNDEPECSVVGEI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           VPK+DFY Y+ KY   ++  ++PA+I  + Y+ ++ +A  + +A+ C G+ R+DF     
Sbjct: 244 VPKADFYDYKAKYEDNSTGLIIPAEITDEEYETIKAVAVQSFKALDCSGLVRADFFLT-K 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +   E+N  PG TPVS+FP +   +G S+  L+  M+  
Sbjct: 303 DSTILMNEVNTMPGFTPVSMFPLLWKESGISYPALIEKMIRL 344


>gi|229015636|ref|ZP_04172626.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
 gi|229021828|ref|ZP_04178404.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228739468|gb|EEL89888.1| D-alanine--D-alanine ligase [Bacillus cereus AH1272]
 gi|228745656|gb|EEL95668.1| D-alanine--D-alanine ligase [Bacillus cereus AH1273]
          Length = 361

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 147/344 (42%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+E +VSL +  A   AL    F++  I +      V                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWVRGERIEGEVTDVEALK 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPAETSEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           +LAS+  MDK+  K +           +  +               +  +  P  +KP  
Sbjct: 127 VLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKNREEAYDKVEEKLGYPCFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 187 LGSSVGINKCKDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF    
Sbjct: 245 IVPKKDFYDYKSKYIDGDTALIIPAEMTEEESDVIKRDAIVAFQSLDGAGLTRADFFLT- 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  + G  + +L+  ++  A
Sbjct: 304 KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPKLIEELINLA 347


>gi|322833759|ref|YP_004213786.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
 gi|321168960|gb|ADW74659.1| D-alanine/D-alanine ligase [Rahnella sp. Y9602]
          Length = 365

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V+ + +D+     +              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNIVDAIDKQRFDVTLLGIDKKGEWHINDASNYLINAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSNNQVALIPGQTENQLIETHSASALSQVDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIK 131
            +  SG+L SA+SMDK  +K+++   G+ V P + + R              +  P  IK
Sbjct: 126 AFVGSGVLGSAVSMDKDVTKRLLRDAGLAVAPFVCLTRANRQKNTFASVSQQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      L ++   +   ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSDEDGYQRALDKAF--SFDHKVLVESAIKGREIECAVLGNDHPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N +     +PA +P + +  ++ +A  A Q + CRG++R D 
Sbjct: 244 CGEVILHDEFYSYDTKYINESGASIAVPADLPRETHDRIRAIALQAFQVLECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++ A +G S+ EL+  ++E A
Sbjct: 304 FLTEQ-GDVVINEINTLPGFTNISMYPKLWAASGLSYSELITRLIELA 350


>gi|167760757|ref|ZP_02432884.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
 gi|167661644|gb|EDS05774.1| hypothetical protein CLOSCI_03142 [Clostridium scindens ATCC 35704]
          Length = 356

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 143/351 (40%), Gaps = 51/351 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSL SG      L + G K   +DV                      
Sbjct: 3   IIVLAGGLSPERDVSLISGAGICRTLREKGHKAYLLDVFFGLPYDPDKLEEVFDLPGGGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAEGIKTTTPDLEALRASRPDQSDCYLGPNVIDLCRIADITFMGLHGSVGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYV 129
           ++L I YT       ALSMDK+ +KQ+    GVP           + T   +     P V
Sbjct: 123 DILGIKYTGPNSFGCALSMDKLVAKQIFKRSGVPTPRGTSLNRNTKDTPLEKLGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP  GGSS+G+ ++  ++     +  S   NH D+++IE Y+ G E  C ++   +L +
Sbjct: 183 IKPCSGGSSIGVYIVHTEEEYREAIRCSFDVNHEDEVVIEPYIKGREYACSIIAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI      F                P  +      ++QR    A + +     +R+DF+
Sbjct: 243 IEIIPKDGIFNYENKYQDGGAQELCPPVSLDDKTQAKIQRAGEKAFRVLHMDVYARADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D    K + LE+N  PGMTP S+ P+ A   G  + +L   ++E++   R
Sbjct: 303 VDETDGKFYCLEMNGLPGMTPASLIPKSARAIGVDYGDLCELIIEESMKTR 353


>gi|312958815|ref|ZP_07773334.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
 gi|311286585|gb|EFQ65147.1| D-alanylalanine synthetase [Pseudomonas fluorescens WH6]
          Length = 364

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+ + F+   I +D++    L              
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRSRFEPVLIGIDKAGHWHLNDTSNFLLNSENPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKANQQVVETTGQGVLEHIDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I        +     + + +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRRNAAHTSFEAAVNRLGLPMFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +      +++L+E  V G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVGSEAEYHAAVELAL--GFDEKVLLESAVQGREIECAVLGNDNPIASG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I  +  + ++RLA  A + +GC G++R D 
Sbjct: 244 CGEIVVSNGFYSYDSKYIDDQAAQVVVPADISHEASERIRRLALEAFEVLGCAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   AG S+ EL+  ++E A
Sbjct: 304 FLT-DDGEVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350


>gi|170767847|ref|ZP_02902300.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
 gi|170123335|gb|EDS92266.1| D-alanine--D-alanine ligase [Escherichia albertii TW07627]
          Length = 364

 Score =  173 bits (437), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   IGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I             + Q  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDITKRLLRDAGLNIAPFITLTRANRHKISFAEVQSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDDPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPANIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P +  V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|194336691|ref|YP_002018485.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
 gi|229485970|sp|B4SAI2|DDL_PELPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194309168|gb|ACF43868.1| D-alanine/D-alanine ligase [Pelodictyon phaeoclathratiforme BU-1]
          Length = 360

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 102/351 (29%), Positives = 166/351 (47%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S+E E+S+ S K+ A+ +    +KV  + +      +               
Sbjct: 6   VALIFGGRSTEHEISIISAKSIAANISAERYKVIPLYITHQGTWLCEGIARDILNLDLSA 65

Query: 46  -------------------LAHLKP----------DLAFNVLHGNFGEDGLVQAILELLE 76
                               A  KP          ++AF  LHG +GEDG +Q  L+   
Sbjct: 66  LLRNSSPEAAAMALDRMVEEAEQKPFNLDFRAIGIEVAFLTLHGTYGEDGRIQGFLDTCN 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127
           IPYT  G+LASAL+MDK  +K  V+  G+ V PSI +                +     P
Sbjct: 126 IPYTGCGVLASALTMDKALTKLCVADAGIAVAPSITLLSAEYHADTEKVHSRIEEKFIYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185
           + +KP   GSS+GI  +   + +P  L  +   +   ++++E+ + G E+   V    + 
Sbjct: 186 FFVKPANLGSSIGISKVHHREQLPAALKSAC--SLDSKIVVEKAITGREIEVAVLGNDEP 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            + V     P SDFY Y  KY   ++   +PA+IP ++  EV+ +A  A++A+GCRG+SR
Sbjct: 244 EVSVCGEIEPGSDFYDYHDKYIHNSAKLFIPARIPDEMQSEVRSIALKAYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D     +   E+N  PG T +S+FP + A +G+SF EL   +++ A
Sbjct: 304 IDFFVDEKRGTIVLNEVNTIPGFTDISMFPRLMAASGHSFPELAERLLQLA 354


>gi|228998192|ref|ZP_04157790.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228761584|gb|EEM10532.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
          Length = 304

 Score =  172 bits (436), Expect = 4e-41,   Method: Composition-based stats.
 Identities = 89/303 (29%), Positives = 155/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VSL +G+   + L+ + ++V  I ++    LV      D+A   LHG
Sbjct: 3   VGVIMGGVSSEKQVSLMTGEEMIAHLDKSKYEVVPIKLNDKKELVEKVRNLDIALLALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            +GEDG +Q  LE L +PYT S +L+S + MDK  SK+++    +     I         
Sbjct: 63  EYGEDGTIQGTLETLGVPYTGSVMLSSGICMDKNMSKKMIRYEDIQTPDWIHLSNTEELQ 122

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           +D    +  P V+KP  GGSS+G+ ++    S+   L     W    +++IE+Y+ G E+
Sbjct: 123 LDEIDKMGYPLVVKPNSGGSSVGVKIVYDKDSLLSSLEDVFKW--DSEIVIEKYIKGEEI 180

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++              ++F+ Y  KY  + +   +  ++P   Y+ V   A   ++A
Sbjct: 181 TCSILDGKL-LPIISIQHTAEFFDYHAKYDDIATIEEV-VELPATTYERVAEAAMTCYRA 238

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D +        + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E + 
Sbjct: 239 LKCSVYARVDIII--KDEIPYVMEVNTLPGMTKNSLLPKSAHAAGISYSKLLDMIIETSL 296

Query: 298 CLR 300
            +R
Sbjct: 297 QVR 299


>gi|319404507|emb|CBI78112.1| D-alanine--D-alanine ligase [Bartonella rochalimae ATCC BAA-1498]
          Length = 306

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 151/309 (48%), Positives = 213/309 (68%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
           +AVLMGG        L        SSG ACA  LE  G+ V+++DVD  +  VL  L+P 
Sbjct: 6   IAVLMGG--------LSSERSVSLSSGSACADILEAHGYSVTRVDVDSRIASVLEKLQPH 57

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + FN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +
Sbjct: 58  IVFNALHGSFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYV 117

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++R  + SQH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+
Sbjct: 118 MDRCAIGSQHPLEPPYVIKPVHEGSSIGVIIVNGDEAFPPHNIVSSERMDKDEVIVEKYI 177

Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G ELTC V+GD  LDV EI       FY Y+ KY S  S H+ PA++ L+IY++VQR++
Sbjct: 178 PGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMS 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQAIGCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W
Sbjct: 238 LAAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKW 297

Query: 292 MVEDASCLR 300
           +VEDASC+R
Sbjct: 298 IVEDASCMR 306


>gi|297182068|gb|ADI18242.1| d-alanine-d-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_40H22]
          Length = 362

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 95/346 (27%), Positives = 157/346 (45%), Gaps = 51/346 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           +L GG S+E EVS+ S ++   A++   ++V    + R+    L   K            
Sbjct: 8   LLFGGQSAEHEVSVVSARSVYQAIDTNRYEVVLAGISRTGQWFLQDSKASLLEQSDVSNA 67

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+   +LHG  GEDG VQ +LEL +  Y  +G+
Sbjct: 68  NGLPVQLAAGQRDLVSLDGMPVGTGSFDVVLPLLHGPRGEDGSVQGLLELADAAYVGAGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
            ASA+ MDK  ++ V +  G+     +++ R            D +  +  P  +KP+  
Sbjct: 128 AASAVGMDKELARAVFAHAGLRQTEYLVIRRSAWSADRQAMLEDIEAKLRYPLFVKPVNL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193
           GSS+GI      +S+   +  ++S++    ++     +  EL C V    D    V    
Sbjct: 188 GSSIGISKAHDTKSLESAIDLAASYDV-KMMVETSVENARELECAVLGNDDPKASVIGEI 246

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P ++FY Y  KY    S  ++PA++P  I  E+QR++  A +AI C G+ R DFL  P 
Sbjct: 247 IPGAEFYDYTTKYIDDRSQLIVPAELPESISAEIQRMSVDAFRAIDCAGLGRVDFLLAP- 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           S  +F  EIN  PG TP+S++P +   +G  + EL+  ++E A   
Sbjct: 306 SGDIFLNEINTMPGFTPISMYPRLWQASGIPYPELINELIELALAR 351


>gi|85712531|ref|ZP_01043579.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
 gi|85693665|gb|EAQ31615.1| D-alanine-D-alanine ligase B [Idiomarina baltica OS145]
          Length = 308

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 101/298 (33%), Positives = 153/298 (51%), Gaps = 9/298 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A  +AL          D        L  L  D AF VLHG
Sbjct: 9   VAVLMGGNSAEREVSLKSGHAVLNALIAQQIDAFAFDPAERPITDLLSLGVDRAFIVLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV-----NR 115
             GEDG +Q  L+ L +PYT S +L  AL+MDK+R+KQ+  S  +PV PSI++       
Sbjct: 69  RGGEDGAMQGALQSLNVPYTGSAVLGCALAMDKVRTKQIWQSLHLPVAPSIVIRVGSAQW 128

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +    ++KP   GSS+G+ V  +   +   + ++  +     +L+E++++G 
Sbjct: 129 DAAQILKQLGDKVIVKPALEGSSIGMSVASEAGELDAAIREALRYQSD--VLVERWINGK 186

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E T  ++ D +L V  +  P    Y +  KY + ++ +  PA +  +  + ++ LA LA 
Sbjct: 187 EYTVALLNDEALPVIRLQTPHQF-YDFSAKYQANDTQYHCPAGLSDEDEEYLRHLAVLAF 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            AI  RG  R D + D    + F LE N  PGMT  S+ P  A   G SF +L+  ++
Sbjct: 246 SAIDGRGWGRIDAMRDDE-GQWFLLEANAVPGMTEKSLVPMAAKQYGLSFEQLVWNIL 302


>gi|308188188|ref|YP_003932319.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
 gi|308058698|gb|ADO10870.1| D-alanine-D-alanine ligase A [Pantoea vagans C9-1]
          Length = 365

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGNTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +                 P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAQLDAEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  +   +   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAF--SFDRKVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +    ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYISESGAQTVVPAAIAAETSDAIRDVAIKAFSALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+++L+  +++ A
Sbjct: 304 FLT-NDGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLISRLIDLA 350


>gi|15614184|ref|NP_242487.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
 gi|20137662|sp|Q9KCF0|DDL_BACHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|10174238|dbj|BAB05340.1| D-alanyl-D-alanine ligase A [Bacillus halodurans C-125]
          Length = 305

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 113/302 (37%), Positives = 166/302 (54%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSLSSGK    AL+  G +V  ID        L  L  DL F  LHG
Sbjct: 3   IAVLYGGTSAEREVSLSSGKGIMEALKANGHEVIGIDFHPDQVRDLVDLDVDLVFIGLHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG VQA+L+LL IPY  +G+  SAL+MDK ++K      G+ V   ++++ FT D 
Sbjct: 63  RLGEDGKVQALLDLLNIPYVGTGVQGSALAMDKAKAKLFFEKAGIRVAEEVVLHSFTYDA 122

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                  + P V+KP + GS++G+ V + ++ +   +    ++ H D +LIE+++ G E+
Sbjct: 123 NAFNFTGTYPVVVKPNQEGSTIGLTVAETEEELLQGI--EEAFRHDDTILIEEFIAGTEV 180

Query: 178 TCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           T       G+         VPK+  Y YE KY+   S H++PA+I  +    VQ+ A  A
Sbjct: 181 TVAVLGNKGEERSLPVVEIVPKNKLYDYESKYAPGMSEHIVPARISEEHTAYVQQAAVRA 240

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           HQA+GC   SR DF+          L++N  PGMTP S++P+ A   G S+ E++   V 
Sbjct: 241 HQALGCDVYSRVDFIVPNDGSDPVILKVNTLPGMTPTSLYPDAAKGVGMSYEEMIQTFVN 300

Query: 295 DA 296
            +
Sbjct: 301 LS 302


>gi|166365192|ref|YP_001657465.1| D-alanyl-alanine synthetase A [Microcystis aeruginosa NIES-843]
 gi|190359167|sp|B0JHC1|DDL_MICAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166087565|dbj|BAG02273.1| D-alanine--D-alanine ligase [Microcystis aeruginosa NIES-843]
          Length = 352

 Score =  172 bits (436), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 144/341 (42%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS++S ++   A         + V    +D++               
Sbjct: 6   VGLLFGGRSGEHEVSINSARSILQAFNYPENLDKYAVIPFYIDKNGCWHSAATARQILTS 65

Query: 46  -------------LAHLKPDL-----AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                        +    P++      F +LHG  GEDG +Q +L L+ + +  SG+L S
Sbjct: 66  GQPLAIESNIKVNIWQFPPEVREMEVWFPILHGPNGEDGTLQGLLTLMRVAFVGSGVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKG 135
            L MDK+  K   ++ G+P                 +  +        I  P  IKP   
Sbjct: 126 CLGMDKIAMKTAFAAAGLPQVKYKAITRSQVWSNPCVFPQLCDQIAEEIGYPCFIKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI   +  Q +   L  ++S++    +        IE       +    +      
Sbjct: 186 GSSVGISKARNRQELEAALDSAASYDRRIIVEAGVTAREIECAVLGNDNPQASLVGEITF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   S+ V+PA IP  I  +V+ +A  A +A+   G+SR DF +   + 
Sbjct: 246 DSDFYDYETKYTDGRSSMVIPANIPDKIANQVREMAVEAFKAVDAAGLSRVDFFYVENTG 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +V   EIN  PG T  S++P++    G  F +L+  +V+ A
Sbjct: 306 EVLINEINTLPGFTNFSMYPQLWKATGLEFDKLVDKLVQLA 346


>gi|320161744|ref|YP_004174969.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
 gi|319995598|dbj|BAJ64369.1| D-alanine--D-alanine ligase [Anaerolinea thermophila UNI-1]
          Length = 369

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 102/347 (29%), Positives = 165/347 (47%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------RSVGLVLAHLKP- 51
           + V+ GG S E EVSL S ++  + L    ++V+QI +          +V   L   +  
Sbjct: 7   VGVIFGGRSGEHEVSLMSSRSVLNVLSPEKYEVTQIGITLEGMWVTGENVWKALKSGQVK 66

Query: 52  ------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG FGEDG +Q +LE+ +  Y  
Sbjct: 67  GLSQAVLLPYPGETILYALRNGTLEPVTTLDVIFPVLHGTFGEDGTLQGLLEMADCAYVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKP 132
           +G+L SA+ MDK   K V+ + G+PV  S+LV R              + L   P+  KP
Sbjct: 127 AGVLGSAVGMDKGLFKDVMRAHGLPVADSVLVTRKQLEQNLSEVIEQVERLGEYPFFTKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189
              GSS+GI        +   LL+++   +  ++LIE+ V     IE++     +    V
Sbjct: 187 ANLGSSVGITKCHSRSELYEGLLEAA--RYDRRILIERGVPDAREIEVSVLGNDEPIASV 244

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               VP  +FYSYE KY    S  ++PA +   + + +++LA  A++AI C G++R DFL
Sbjct: 245 PGEIVPGDEFYSYEAKYLMETSKLLIPAPLSEALSERIRQLAIQAYRAIDCAGMARVDFL 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  + + F  EIN  PG T +S++P++   +G S+  L+  ++E A
Sbjct: 305 VNRNTGECFINEINTIPGFTAISMYPKLWEASGISYTALIDRLIELA 351


>gi|27381549|ref|NP_773078.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
 gi|39931119|sp|Q89GA7|DDLA_BRAJA RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthase A
 gi|27354717|dbj|BAC51703.1| D-alanine--D-alanine ligase A [Bradyrhizobium japonicum USDA 110]
          Length = 373

 Score =  172 bits (435), Expect = 5e-41,   Method: Composition-based stats.
 Identities = 99/353 (28%), Positives = 158/353 (44%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG S E EVSL S  +    L+   F+V  + +D++       L+          
Sbjct: 7   VVVLYGGRSGEHEVSLKSAASVFRHLDRTRFEVIPVSIDKTGRWQWNDLRSLDQAHAAAL 66

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F V+HG   EDG VQ +LEL ++
Sbjct: 67  PILPDAPEMRLARGPDGRGVLVPITQGAAAPIAIDVVFPVIHGPLCEDGTVQGLLELADV 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128
            Y  SG+LASA+SMDK  +K++    G+PV P  ++ R       +         +S P 
Sbjct: 127 AYVGSGVLASAVSMDKDVAKRLAEFAGIPVAPYRVLTRKAFVQDRVSSLAKAVEGLSLPV 186

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI  +K   ++   L  +    +  ++L++Q +D  E+   V+ D +L 
Sbjct: 187 FVKPCNMGSSVGIHKVKTQDALEAALDDAF--RYDVKVLVQQGIDAREIEVAVLEDETLF 244

Query: 189 VTE----IAVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +           +FYSYE KY   +   V  PA++     + V+ LA     A+ C G 
Sbjct: 245 ASLASELNPNAHHEFYSYEAKYLDPDGARVDLPARLDAAQMERVRSLATRVFAALECSGF 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF  D  + +  + EIN  PG T +S++P+M   +G  + ELL  +V+ A
Sbjct: 305 ARVDFFLDRKTGEFCFNEINTLPGFTSISMYPKMMEASGVPYGELLSRLVDLA 357


>gi|331085322|ref|ZP_08334408.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
 gi|330408105|gb|EGG87595.1| hypothetical protein HMPREF0987_00711 [Lachnospiraceae bacterium
           9_1_43BFAA]
          Length = 352

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG SSE EVS  S     S ++   ++   I + +    +               
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ +            + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKVLDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V    +         
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  +  
Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V + EIN  PG T +S++P +    G     L+  ++E A
Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGIDTTALVTELIELA 348


>gi|282917432|ref|ZP_06325185.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283771252|ref|ZP_06344141.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
 gi|282318634|gb|EFB48991.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           D139]
 gi|283459457|gb|EFC06550.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           H19]
          Length = 356

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|16077523|ref|NP_388337.1| D-alanyl-alanine synthetase A [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|2829831|sp|P96612|DDL_BACSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1881266|dbj|BAA19293.1| PROBABLE D-ALANINE--D-ALANINE LIGASE A [Bacillus subtilis]
 gi|2632756|emb|CAB12263.1| D-alanyl-D-alanine ligase A [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 354

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 53/342 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------ 46
            GG S+E  VSL +  A   AL    F +  I +      V                   
Sbjct: 2   YGGKSAEHNVSLQTALAVIKALNTEKFDIHPIYITEKGEWVRGARLTEPVSNVKMLQFEQ 61

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                 +   D+ F +LHG  GEDG +Q +LELL IPY  +G+L
Sbjct: 62  GGSAFSPAALNQEMFPQEASQQNEAIDVVFPLLHGPNGEDGTIQGMLELLNIPYVGNGVL 121

Query: 86  ASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           AS+  MDK+  K +           +  +    +        + +  +  P  +KP   G
Sbjct: 122 ASSAGMDKVVMKHLFAQVGLAQAKYAAFLKKDWTRSPKESCEEVEQELGYPCFVKPANLG 181

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAV 194
           SS+GI   +  + +      +    +  ++++E+ ++G E+        D    V     
Sbjct: 182 SSVGISKCRNREELQKAFELAF--QYDRKVVVEEGINGREIEIGVLGNDDPKCSVVGEIA 239

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA +  + Y  +  +A  A +AI   G+ R+DF      
Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAIVTDEEYATISDMAIKAFKAIDGSGLVRADFFLTA-D 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 299 GEVLINEVNTMPGFTPFSMFPLLWKEAGVEYADLIEQLVELA 340


>gi|304406373|ref|ZP_07388029.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
 gi|304344431|gb|EFM10269.1| D-alanine/D-alanine ligase [Paenibacillus curdlanolyticus YK9]
          Length = 377

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 99/355 (27%), Positives = 154/355 (43%), Gaps = 61/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S E EVSL +  A     + + ++V    +        A +           
Sbjct: 7   VGLIYGGKSGEHEVSLRTALAVMGEFDFSRYEVKPFYITTDGQWRTADVLLAPPADVAAL 66

Query: 50  -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F +LHG FGEDG +Q +L
Sbjct: 67  RLGGAEQADAAAIGSGGALAPVFQGLQAGSASHGGNGAVDVIFPLLHGTFGEDGTIQGLL 126

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------- 125
           E+  IPY  +G+LASA+ MDK+  K+V +  G+P C     NR   D +           
Sbjct: 127 EMANIPYVGAGVLASAVGMDKVMMKKVFAHEGLPQCMFRYFNRTQWDKETDYYVTEIEVS 186

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P  IKP   GSS+GI   K  + +   +  +    +  ++++E++VD  E+   V+G
Sbjct: 187 LGYPCFIKPANLGSSVGISKAKNREELIEAINYAF--RYDRKVIVEEFVDAREIEVSVLG 244

Query: 184 DASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +     +      P +DFY Y+ KY    S   +PA IP    + V+ +A  A+QAI   
Sbjct: 245 NDEPKASVPGEIRPSNDFYDYKAKYIDGTSVMEIPANIPALTSEAVREMAIRAYQAIDGS 304

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+SR DF       ++F  E+N  PG TP S++P M    G  +RELL  ++E A
Sbjct: 305 GLSRVDFFMRKSDGELFINEVNTMPGFTPFSMYPLMWQETGLPYRELLDTLIELA 359


>gi|255659953|ref|ZP_05405362.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
 gi|260847827|gb|EEX67834.1| D-alanine--D-alanine ligase [Mitsuokella multacida DSM 20544]
          Length = 312

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 164/306 (53%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E E+S  +G A   AL+  G+    ++++  +    +      + FN LH
Sbjct: 6   IVVVMGGPSTEAEISRQTGSAILKALQSKGYNAEGMELNPPTFAEDIKKSGCAIVFNALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGEDG++Q  L++L IPYT SG+LA+A++MDK  SK+V  + G+    S    R+ M 
Sbjct: 66  GKFGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKAASKRVFVAEGISTPRSHTYYRYEMK 125

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +   S P V+K    GSS+G+ +++   ++   L ++   ++ D++L+E+++ 
Sbjct: 126 RDLAAEIKQGFSLPVVVKAASQGSSIGVYIVETKDALEDALKEAF--SYNDEVLVEEFIR 183

Query: 174 GIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V G+               S  Y YE KY+   STH++PA++  +  KE+Q L
Sbjct: 184 GKELTVAVWGNEEKKEAFPIIEITTTSGRYDYESKYTKGASTHIIPARVSAEKTKEIQDL 243

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A GC+G++R D +        + +E+N  PGMT +S+ P+     G  F EL  
Sbjct: 244 AIKTFTACGCKGVARVDMMLSE-DGTPYVIEVNSVPGMTELSLVPDAGRAMGVEFPELCE 302

Query: 291 WMVEDA 296
            ++E A
Sbjct: 303 RILEMA 308


>gi|118594415|ref|ZP_01551762.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
 gi|118440193|gb|EAV46820.1| D-alanylalanine synthetase [Methylophilales bacterium HTCC2181]
          Length = 302

 Score =  172 bits (435), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 94/298 (31%), Positives = 146/298 (48%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ERE+SL SG+A  ++L  +      +D        LA       F  LHG
Sbjct: 9   VAVLLGGESNEREISLQSGQAVLTSLLQSKVNAFGLDPKFEPLSKLAE--CSRVFICLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q+ L+ ++IPYT SG  AS L MDK+ SK +     +     + +       
Sbjct: 67  KDGEDGKIQSYLDDIKIPYTGSGFHASKLGMDKLLSKNIWKKLKINTPNFVRLEEGMTYD 126

Query: 121 QHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +   +    + IK    GSS+GI  + K Q        +      + ++ E  + G E T
Sbjct: 127 EVCKNLGSSFFIKAANSGSSIGISKVTKPQQYQAAFESAYKV--DNTVIAEMMIFGEEFT 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   S        PK+DFY YE KY   ++  + PAK+   +  ++ +L   A  A+
Sbjct: 185 LPILDS-SPLSIVEIRPKTDFYDYEAKYHRDDTEFICPAKLDKVLVDKINQLGMKAFNAL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G  R DF+ +    +VF +E+N  PGMT  S+ P  A  +G SF  L+L +++ A
Sbjct: 244 GCSGWGRVDFMINNQ-NEVFIIEVNTIPGMTSHSLVPMSAKQSGLSFDSLVLKVLDTA 300


>gi|166032106|ref|ZP_02234935.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
 gi|166027829|gb|EDR46586.1| hypothetical protein DORFOR_01809 [Dorea formicigenerans ATCC
           27755]
          Length = 355

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 143/351 (40%), Gaps = 51/351 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSL+SG      L + G +   +D+                      
Sbjct: 3   IIVLAGGLSPERDVSLTSGAGICKTLLENGHQAYLLDLYFGLENAPANLEDVFTLPGAGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAKNISTKEPDLEALKKSRPDQSDCMFGPNVIELCRMADITFVALHGSVGENGKLQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129
           +LL I YT       ALSM+K+ +KQ+    GVP           +    S+     P V
Sbjct: 123 DLLGIKYTGCNSFGCALSMNKLVTKQIYKMSGVPTPRGTHLTKYTKDLPLSELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS+G+ +   ++     + +S   N  ++L+IE Y+ G E    V+   +L +
Sbjct: 183 VKPCENGSSIGVYICHTEEEYNNAVRESFEKNPDEELVIEPYIKGREFASAVIAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI      F       +        P  I  +  + + R    A  A+     +R+DF+
Sbjct: 243 VEIIPKDGVFNYENKYQAGGAQEICPPVSIDEETQQRMMRAGEEAFAALRMDVYARADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D    + + LE+N  PGMT  S+ P+ A  AG  + EL   ++E++   R
Sbjct: 303 IDDEDGEFYSLEMNALPGMTAASLLPKAAKAAGIEYNELCERIIEESMNAR 353


>gi|324114603|gb|EGC08571.1| D-alanine-D-alanine ligase [Escherichia fergusonii B253]
          Length = 364

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 154/348 (44%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +    +  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P +  V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|319407500|emb|CBI81148.1| D-alanine--D-alanine ligase [Bartonella sp. 1-1C]
          Length = 306

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 151/309 (48%), Positives = 215/309 (69%), Gaps = 17/309 (5%)

Query: 1   MAVLMGGISSEREVSL--------SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
           +AVLMGG        L        SSG ACA  LE  G+ V+++DVD  +  +L  L+P 
Sbjct: 6   IAVLMGG--------LSSERSVSLSSGSACADVLEAHGYSVTRVDVDSRIASILEKLQPH 57

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +AFN LHG+FGEDG +Q ILE L+IPYTHSG++ASAL+MDK R+K + +S GVPV PS +
Sbjct: 58  IAFNALHGSFGEDGRIQGILEYLKIPYTHSGVMASALAMDKGRAKIIAASAGVPVAPSYV 117

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++R  + SQH + PPYVIKP+  GSS+G+I++  D++ P   + SS     D++++E+Y+
Sbjct: 118 MDRCAIGSQHPLEPPYVIKPVHEGSSVGVIIVNGDEAFPPHNIASSERMDKDEVIVEKYI 177

Query: 173 DGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G ELTC V+GD  LDV EI       FY Y+ KY S  S H+ PA++ L+IY++VQR++
Sbjct: 178 PGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKSGGSIHICPAQLSLNIYQKVQRMS 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +AHQAIGCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ +++ W
Sbjct: 238 LVAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTSTSLVPDIAKASGRTYSDIVKW 297

Query: 292 MVEDASCLR 300
           +VEDASC+R
Sbjct: 298 IVEDASCMR 306


>gi|298528065|ref|ZP_07015469.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298511717|gb|EFI35619.1| D-alanine/D-alanine ligase [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 300

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 94/295 (31%), Positives = 152/295 (51%), Gaps = 7/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG S ER+VSL+       AL+  G +V  +D+      ++   +  D A   LHG 
Sbjct: 5   LIAGGWSKERQVSLNGAAQIKEALKSLGHEVLFLDLSPDYQELVNKAREADAAIINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG +Q +LE + +PY  SG+  S L+++K  SKQ  ++ G+          F     
Sbjct: 65  PGEDGSIQGVLEDVGLPYQGSGVRGSFLALNKALSKQFYANHGLRTPKG--GLYFPQGRL 122

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H + PP + KP +GGSSL + +    + +   L Q  S +   ++L+E+ ++G E++C V
Sbjct: 123 HHVPPPVICKPNQGGSSLDMQIFYNQEEMYSFLNQVDSEH---EILVEELINGHEVSCAV 179

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + +  L    I   K DF+ Y  KY    +  + PA I  +  + +Q ++  AH+ +G R
Sbjct: 180 LDNEPLPPILIQPVKGDFFDYNSKYDPDGAVEICPAPISQEASRSIQEMSLQAHRILGLR 239

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             SRSDF+ D     ++ LE N  PGMT  S+ P+ A  AG  F EL+  ++  A
Sbjct: 240 HYSRSDFMLDQQDN-IYILETNTLPGMTRTSLVPKAAQQAGIGFTELIARLLSLA 293


>gi|113477630|ref|YP_723691.1| D-alanyl-alanine synthetase A [Trichodesmium erythraeum IMS101]
 gi|123351842|sp|Q10X06|DDL_TRIEI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110168678|gb|ABG53218.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 366

 Score =  172 bits (435), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 148/355 (41%), Gaps = 59/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S K  A+AL        +++  I + ++               
Sbjct: 6   VGLLFGGCSGEHEVSIRSAKVIATALTKVQNKEKYELIPIYIQKNGLWQPSDFSQKVLNS 65

Query: 46  ---------------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILE 73
                                      L  + P     D+ F +LHG  GEDG +Q +L+
Sbjct: 66  DHPSLLQLTNENNHDLNTSLTQQSSSPLWQIPPQAAQVDVWFPILHGPNGEDGTIQGLLK 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------SQ 121
           L+++P+  SG+L SA+ MDK+  K      G+P     +V R  +              +
Sbjct: 126 LMQVPFVGSGVLGSAMGMDKIAMKIAFDHAGLPQVKYQVVTRSQIWSNSCVFPKLCDDIE 185

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P  +KP   GSS+GI  ++    +   L  ++S++    +        +E     
Sbjct: 186 TTLEYPCFVKPANLGSSVGIAKVRSRSELETALDNAASYDRRIIVEAGVEAKELECAVLG 245

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                  +       SDFY YE KY+   +   +PA++   I  +++ +A  A  A+   
Sbjct: 246 NDMPKASIVGEITYNSDFYDYETKYTEGKADLHIPARVSEAIATKIKEMATQAFLAVDAA 305

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF +   + ++   EIN  PG T  S++P +   +G  F EL+  +++ A
Sbjct: 306 GLARVDFFYVEKTGEILINEINTMPGFTSSSMYPMLWEASGIPFSELVDTLIQLA 360


>gi|289522342|ref|ZP_06439196.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
 gi|289504178|gb|EFD25342.1| D-alanine--D-alanine ligase B [Anaerobaculum hydrogeniformans ATCC
           BAA-1850]
          Length = 316

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 100/309 (32%), Positives = 152/309 (49%), Gaps = 19/309 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS--QIDVDRSVGLVLAHLKPDLAFNVLHG 60
           VL GG S EREVSL+SGKA   A    GF V    ++  + V  ++     D+ F  LHG
Sbjct: 5   VLYGGDSPEREVSLASGKAVLEAASRCGFDVLDGCVETVKDVVRLMNERDCDVIFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111
           ++GEDG +QA L+  +IPYT SG  A  L+M+K+ SK      G+P    +         
Sbjct: 65  SWGEDGRLQAFLDFYDIPYTGSGSEACMLAMNKVLSKYRFQRDGIPTPDGVEANLFQEGI 124

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                         L     VIKP + GS+LG+ VI     +   +  +S  ++   ++ 
Sbjct: 125 NGACKKILEYYDYFLNGGKMVIKPARCGSTLGVSVITSSSDLYEAVQLAS--SYDSLIIA 182

Query: 169 EQYVDGIELTCGVMGD--ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           E+Y+ G E+T  V  D           VPK+  YSY+ KY+  NS + +PA++   I K+
Sbjct: 183 ERYISGKEITVAVWDDGKPQAFPIIEIVPKNSLYSYKAKYTPGNSAYFVPAQLEDSIAKK 242

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            Q  A +AH ++GC   SR D   D      + LE+N  PG+T  S+ P+ A   G+ F 
Sbjct: 243 AQEAALMAHISLGCELYSRVDMRLDTQGN-PYVLEVNTVPGLTSTSLVPKAAKAIGWDFD 301

Query: 287 ELLLWMVED 295
             +  ++++
Sbjct: 302 RFVKELIQN 310


>gi|159900023|ref|YP_001546270.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
 gi|229485958|sp|A9B406|DDL_HERA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|159893062|gb|ABX06142.1| D-alanine--D-alanine ligase [Herpetosiphon aurantiacus ATCC 23779]
          Length = 361

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 153/350 (43%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG S E EVSL S +A  +AL+   + V  I + R+    L+   P         
Sbjct: 6   VGIVFGGKSGEHEVSLKSARAVMNALDPEKYTVIPIGITRNGQW-LSGGDPLLALEQQAD 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+   VLHG FGEDG +Q + E   +
Sbjct: 65  QKMLGRTPQAGVVSETAIVQSAGSLPEQTNVAALDVIIPVLHGPFGEDGTIQGVFEFANL 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPY 128
           PY   G+LA+++ MDK   K   ++ G+P  P  LV R    +Q           +  P 
Sbjct: 125 PYVGCGVLAASVGMDKGLMKSAFAAAGLPQVPWQLVLRRDWQTQPEAVYERLEATLHYPM 184

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI  +     +      + +  +  ++++EQ ++  E+   ++G+    
Sbjct: 185 FVKPANLGSSVGISKVSNRAEL--ATGMAEAAGYDRRIVVEQGINAREIEVAILGNDDPK 242

Query: 189 VTEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +      P +DFY Y  KY    +   +PA++     ++++ +A  A +AI   G++R 
Sbjct: 243 PSVPGEVLPANDFYDYADKYLEGQTQFAIPAELDAATSEQLREMAVTAFKAIDGAGLARV 302

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF  +  +  ++  EIN  PG T +S +P++    G  + ELL  +++ A
Sbjct: 303 DFFVERETGAIYINEINTFPGFTAMSQYPKLWEATGLGYSELLDRLIDLA 352


>gi|269959078|ref|YP_003328867.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
 gi|269848909|gb|ACZ49553.1| D-alanine--D-alanine ligase [Anaplasma centrale str. Israel]
          Length = 336

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 160/300 (53%), Gaps = 5/300 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P+VIKP+ GGS++G+  I          L   +     ++L+E+Y+ G E+  
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSEYLD--LSVHADALEGRMLVEEYIPGQEVHT 192

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E    +   Y Y+ KY      HV PA +  D+Y      A   +Q +G
Sbjct: 193 AVFLGRAIGTMEFLF-EGRVYGYDAKYVEGLCRHVFPANLSDDVYSLTMEWAVKLYQCLG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDASC 298
           CR +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G  F +++ ++V+DA C
Sbjct: 252 CRTVSRVDFRYDKANKALKLLEINTHPGMTACSALPEILWLRCGLDFDQVVDFIVKDALC 311


>gi|94268696|ref|ZP_01291259.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93451501|gb|EAT02328.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  171 bits (434), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 107/309 (34%), Positives = 165/309 (53%), Gaps = 13/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + ++V + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRVRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L  +    H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELTPALETAF--AHDDQVMVEQFVAGR 186

Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T         +       +P  +  F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+ +  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F  LL  
Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDFGALLDR 304

Query: 292 MVEDASCLR 300
           +++ A   R
Sbjct: 305 LLQLAREDR 313


>gi|304310630|ref|YP_003810228.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
 gi|301796363|emb|CBL44571.1| D-alanine-D-alanine ligase [gamma proteobacterium HdN1]
          Length = 362

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 152/344 (44%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S+E EVS+ S +  A AL+ + F +  + V +                    
Sbjct: 7   VALVFGGRSAEHEVSIRSARNIAEALDKSRFILELLGVSKQGDWFYFSQAKDLYEFDTIC 66

Query: 46  ----LAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                A  KP                     D+AF +LHG +GEDG VQ + ++L +PY 
Sbjct: 67  STQPPASGKPVLFGSRQARPIMTTADDTISVDVAFPILHGTYGEDGCVQGLFKMLNLPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGG 136
              +++SA  MDK   K++    G+P    +             +  +  P  IKP   G
Sbjct: 127 GCDVMSSATGMDKDIMKRLFLQAGIPTADYVLVTRTDTPDFPLYREKLGLPMFIKPANAG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIA 193
           SS+G+  +K +      L  +    +  +++IE+Y+ G E+ C                 
Sbjct: 187 SSIGVHKVKTEAEFGPALEDAL--RYDRKVIIERYIQGREIECSVLGTTDAPKASTAGEV 244

Query: 194 VPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           +   DFYSYE KY     +   +PAKI       +Q LA     A+GC G++R DF    
Sbjct: 245 ITTHDFYSYEAKYLDENGARTEIPAKIDAATLARIQALAEKTFTAMGCFGMARVDFFLTE 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  ++  EIN  PG T +S++P+M  ++G ++ +L+  +++ A
Sbjct: 305 -SGALYVNEINTLPGFTNISMYPKMWEHSGVTYTDLITRLIDLA 347


>gi|302751964|gb|ADL66141.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6008]
          Length = 361

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 11  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 70

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 71  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 308 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 346


>gi|283471299|emb|CAQ50510.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 356

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|258422916|ref|ZP_05685816.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
 gi|257846940|gb|EEV70954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9635]
          Length = 356

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKEGSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|253731080|ref|ZP_04865245.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253733083|ref|ZP_04867248.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304379264|ref|ZP_07362003.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|253725207|gb|EES93936.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253728991|gb|EES97720.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH130]
 gi|304342123|gb|EFM08023.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC BAA-39]
 gi|320140746|gb|EFW32598.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143721|gb|EFW35498.1| D-ala D-ala ligase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 393

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 102

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|297210098|ref|ZP_06926491.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300910460|ref|ZP_07127912.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
 gi|296885298|gb|EFH24238.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           ATCC 51811]
 gi|300888302|gb|EFK83493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH70]
          Length = 393

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 102

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|116668041|pdb|2I80|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668042|pdb|2I80|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 360

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|116668048|pdb|2I87|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668049|pdb|2I87|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668051|pdb|2I8C|A Chain A, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
 gi|116668052|pdb|2I8C|B Chain B, Allosteric Inhibition Of Staphylococcus Aureus
           D-Alanine:d- Alanine Ligase Revealed By Crystallographic
           Studies
          Length = 364

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|21283735|ref|NP_646823.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49486876|ref|YP_044097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|23813964|sp|Q8NVH8|DDL_STAAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56748621|sp|Q6G7M7|DDL_STAAS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21205177|dbj|BAB95871.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49245319|emb|CAG43794.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MSSA476]
          Length = 356

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIISTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|15925073|ref|NP_372607.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|15927658|ref|NP_375191.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           N315]
 gi|57650756|ref|YP_186890.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           COL]
 gi|82751685|ref|YP_417426.1| D-alanyl-alanine synthetase A [Staphylococcus aureus RF122]
 gi|87159975|ref|YP_494685.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|88195984|ref|YP_500797.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|148268535|ref|YP_001247478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH9]
 gi|150394599|ref|YP_001317274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JH1]
 gi|151222199|ref|YP_001333021.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156980399|ref|YP_001442658.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|161510295|ref|YP_001575954.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141604|ref|ZP_03566097.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. JKD6009]
 gi|255006872|ref|ZP_05145473.2| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257793842|ref|ZP_05642821.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|258407010|ref|ZP_05680160.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|258422031|ref|ZP_05684948.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|258440494|ref|ZP_05690664.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|258445702|ref|ZP_05693880.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|258450156|ref|ZP_05698251.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|258453206|ref|ZP_05701197.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|258453389|ref|ZP_05701371.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|262052496|ref|ZP_06024694.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|269203719|ref|YP_003282988.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|282895277|ref|ZP_06303490.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|282923072|ref|ZP_06330757.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282929555|ref|ZP_06336952.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|284025118|ref|ZP_06379516.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           132]
 gi|294850568|ref|ZP_06791295.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|295407014|ref|ZP_06816816.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|296275713|ref|ZP_06858220.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MR1]
 gi|297246743|ref|ZP_06930560.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|54036952|sp|P63892|DDL_STAAN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54040737|sp|P63891|DDL_STAAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71153332|sp|Q5HEB7|DDL_STAAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122538976|sp|Q2FWH3|DDL_STAA8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123484968|sp|Q2FF43|DDL_STAA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123548215|sp|Q2YUH1|DDL_STAAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198505|sp|A7X4R6|DDL_STAA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|172048980|sp|A6QIS7|DDL_STAAE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083058|sp|A6U3G9|DDL_STAA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083059|sp|A5IUM9|DDL_STAA9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083060|sp|A8Z4Y6|DDL_STAAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13701878|dbj|BAB43170.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247856|dbj|BAB58245.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|57284942|gb|AAW37036.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           COL]
 gi|82657216|emb|CAI81656.1| D-alanine-D-alanine ligase [Staphylococcus aureus RF122]
 gi|87125949|gb|ABD20463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|87203542|gb|ABD31352.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           NCTC 8325]
 gi|147741604|gb|ABQ49902.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149947051|gb|ABR52987.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           JH1]
 gi|150374999|dbj|BAF68259.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722534|dbj|BAF78951.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160369104|gb|ABX30075.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|257787814|gb|EEV26154.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9781]
 gi|257841343|gb|EEV65787.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9763]
 gi|257841931|gb|EEV66363.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9719]
 gi|257852563|gb|EEV76481.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A8115]
 gi|257855541|gb|EEV78478.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6300]
 gi|257856630|gb|EEV79536.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A6224]
 gi|257859152|gb|EEV82009.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5948]
 gi|257864370|gb|EEV87116.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A5937]
 gi|259159617|gb|EEW44663.1| D-alanylalanine synthetase [Staphylococcus aureus 930918-3]
 gi|262076009|gb|ACY11982.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           ED98]
 gi|269941683|emb|CBI50090.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282589034|gb|EFB94138.1| D-alanine-D-alanine ligase [Staphylococcus aureus A10102]
 gi|282593263|gb|EFB98260.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9765]
 gi|282762350|gb|EFC02497.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8117]
 gi|285817748|gb|ADC38235.1| D-alanine--D-alanine ligase [Staphylococcus aureus 04-02981]
 gi|294822588|gb|EFG39030.1| D-alanine-D-alanine ligase [Staphylococcus aureus A9754]
 gi|294968039|gb|EFG44066.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8819]
 gi|297176403|gb|EFH35675.1| D-alanine-D-alanine ligase [Staphylococcus aureus A8796]
 gi|298695357|gb|ADI98579.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           ED133]
 gi|302333729|gb|ADL23922.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           JKD6159]
 gi|312830435|emb|CBX35277.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315128754|gb|EFT84754.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS03]
 gi|315196985|gb|EFU27327.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS01]
 gi|323439201|gb|EGA96928.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O11]
 gi|323442421|gb|EGB00050.1| D-alanyl-alanine synthetase A [Staphylococcus aureus O46]
 gi|329314768|gb|AEB89181.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           T0131]
 gi|329724009|gb|EGG60533.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329726355|gb|EGG62823.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21172]
 gi|329729270|gb|EGG65678.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 356

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|229463107|gb|ACQ66105.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|56123448|gb|AAV74563.1| D-alanine:D-lactate ligase [Clostridium sp. MLG480]
          Length = 342

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AIFSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++ +        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQVIEKGGKPEARTLTYPVFVKPARSGSSFGVTKVNS 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+  ++PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMIIVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|308387880|pdb|3N8D|A Chain A, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
 gi|308387881|pdb|3N8D|B Chain B, Crystal Structure Of Staphylococcus Aureus Vrsa-9
           D-Ala:d-Ala Ligase
          Length = 364

 Score =  171 bits (434), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +   C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLKIPADLDEDVQLTLRNMALEAFKETDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|292669643|ref|ZP_06603069.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
 gi|292648440|gb|EFF66412.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas noxia ATCC
           43541]
          Length = 779

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 157/310 (50%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SGKA   AL   G+  + ++ + ++    +  L+P + FN LH
Sbjct: 473 IVVVMGGPSTEAEVSRRSGKAILQALLSKGYPAAGLELMPKTFAEEIQKLRPAIVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LV 113
           G +GEDG++Q  L++L +PYT SG+ A+AL+MDK  +K++  + G+              
Sbjct: 533 GKYGEDGVLQGTLDMLGVPYTGSGVRAAALTMDKGTAKRIFRAEGIATPRFRLIDAGKCG 592

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D +     P V+K  + GSS+G+ ++ + + +   L       +G + L+E+++ 
Sbjct: 593 EHTAEDIRREFGLPVVVKAPEQGSSIGVHIVTRAEELNAALDDVF--TYGREALVEEFIR 650

Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V G                S  Y YE KY+   STH++PA +  +  + VQ +
Sbjct: 651 GRELTVVVWGMPAAAEALPVIEITTASGRYDYESKYTPGASTHIVPAALSKECTEAVQAI 710

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  A GC G +R D +      + + +E+N  PGMT  S+ P+ A   G  F EL  
Sbjct: 711 AVRAFTACGCSGAARVDIMLSEEE-QPYVIEVNAVPGMTETSLVPDAARAVGMEFPELCE 769

Query: 291 WMVEDASCLR 300
            ++  A   R
Sbjct: 770 KILTMAGYYR 779


>gi|217388366|ref|YP_002333395.1| D-alanine--D-lactate ligase [Enterococcus faecalis]
 gi|56123444|gb|AAV74561.1| D-alanine:D-lactate ligase [Clostridium sp. MLG856-1]
 gi|56123454|gb|AAV74566.1| D-alanine:D-lactate ligase [Clostridium sp. MLG392]
 gi|56123456|gb|AAV74567.1| D-alanine:D-lactate ligase [Clostridium sp. MLG661]
 gi|61191896|gb|AAX39412.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|216409908|dbj|BAH02343.1| vanB2 [Enterococcus faecalis]
          Length = 342

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|291518128|emb|CBK73349.1| D-alanine--D-alanine ligase [Butyrivibrio fibrisolvens 16/4]
          Length = 347

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 154/341 (45%), Gaps = 52/341 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+SSER+VS  SG   A AL + G +   +DV                      
Sbjct: 3   IVVLAGGLSSERDVSFKSGTMVAKALRNRGHRALVLDVFMGYKDADCDITDIFENSEANS 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE G VQA  
Sbjct: 63  VKVSDIPTEAPDIKAIKASRPDQSPSFFGPNVIKICQKADVVFMALHGGEGESGKVQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           +L  I YT +  L+SA++MDK  +K V+   GVPV     + +           P ++KP
Sbjct: 123 DLFGIKYTGNDYLSSAIAMDKQMTKNVIEKAGVPVPTGTSLKKENRKKFKFDKFPCIVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GGSS+G+ ++ + + +   L  +  W   D++++EQ++ G E +   + +        
Sbjct: 183 NCGGSSIGVTIVNEPEELNAALDAAFEWE--DEVVVEQFISGREFS-DGVIEGKALPIIE 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             PK  FY Y+ KY++ ++    PA+I      ++++ A +A++A+G    +R DF+ D 
Sbjct: 240 IAPKQGFYDYKNKYAAGSAVETCPAEISHKATDKMRKYAVMAYKALGLTTYARIDFMMD- 298

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++ LE N  PGMTP S+ P+ A   G  F +L   ++
Sbjct: 299 KDENIYCLEANTLPGMTPTSLLPQEAKVTGMDFEDLCEKLI 339


>gi|312886956|ref|ZP_07746560.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
 gi|311300268|gb|EFQ77333.1| D-alanine/D-alanine ligase [Mucilaginibacter paludis DSM 18603]
          Length = 328

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 147/324 (45%), Gaps = 30/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRS-- 41
           +A+L GG S E EVS+ S +  A+ L    +KV  I                 D+D++  
Sbjct: 4   IALLAGGFSGEYEVSVKSAQYIAANLPAEKYKVYTILITADGWFYESEGGEHIDIDKNDF 63

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    +K D AF  +HG  GEDG +Q   ++L IPY       SA++M+K  +K +V
Sbjct: 64  SLSLNGDRIKFDFAFITVHGTPGEDGKLQGYFDMLCIPYNTCDATTSAITMNKAYTKAIV 123

Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +          +                +  P  IKP  GGSS+G+  +    ++P  L 
Sbjct: 124 NGIEGLHTAKSMQLFQHDGHDIASIAARLKFPLFIKPNNGGSSVGMSKVHNVAALPQALE 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           ++       Q+L+E+++ G E +     + G+  +      +   +F+ YE KY+   + 
Sbjct: 184 KAFH--EDHQILVEEFIKGREFSIGIVRLHGELKVLPATEIISSKEFFDYEAKYTDGVTQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA +  +  K + R+    +  + C G++R DF+    S+  +++EIN  PG T  S
Sbjct: 242 EITPAHLSQEQVKTIARIVSEVYLRLNCHGMTRLDFILQEESQDFYFIEINTTPGQTVNS 301

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           + P+    AG   ++    ++E A
Sbjct: 302 LIPQQVRAAGMDIKDFYSALIEGA 325


>gi|223984928|ref|ZP_03635031.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
 gi|223963097|gb|EEF67506.1| hypothetical protein HOLDEFILI_02333 [Holdemania filiformis DSM
           12042]
          Length = 350

 Score =  171 bits (434), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 152/340 (44%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E  VSL S      AL+   + V +I +D      L              
Sbjct: 7   VAVLFGGCSDEYSVSLHSAAGVLRALDPERYTVVKIGIDPQGDWFLTSASAAEIEADQWH 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +  D+ F VLHG  GEDG +Q + EL  IP+   G
Sbjct: 67  TASDQRLRLTLARRNFELKDETGEAVDVDVFFPVLHGRNGEDGTLQGMFELFHIPFVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSL 139
           + AS L MDK  S Q+    G+ V P ++     +D +      +  P  +KP +GGSS+
Sbjct: 127 MDASLLGMDKALSHQLARQNGIEVSPFVVFAYSEIDQKRESLKRLHLPCFVKPARGGSSI 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPK 196
           GI  I   + +      + +  H  ++LIE+ V G E+ C ++           +     
Sbjct: 187 GITKINTWEELDAA--CACAAKHDRRILIEEAVSGEEIGCSILETPDGLVLGAVDRIHLN 244

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           SDF+ YE KY   ++    PA++P  + ++++RLA    +   C+G+ R D    P  ++
Sbjct: 245 SDFFDYEEKYVDTHAEVECPAQLPDFVSEQMRRLARKLWEIHHCQGLVRVDCFLTP-DQR 303

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + + EIN  PGMT  S +P M   AG SF  +L  ++E+A
Sbjct: 304 ILFNEINTLPGMTATSRYPRMMGQAGISFETILDTLIEEA 343


>gi|87122625|ref|ZP_01078502.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
 gi|86162083|gb|EAQ63371.1| D-alanylalanine synthetase [Marinomonas sp. MED121]
          Length = 320

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 95/304 (31%), Positives = 155/304 (50%), Gaps = 13/304 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLVLAHLKPDLAFNV 57
           V+ GG  +EREVSL SG    +AL+++G++ + +D+       +    L     DLAF  
Sbjct: 10  VIYGGRCAEREVSLQSGGLVLAALQESGYQATGLDLYGQDLSLNPVEQLQSADFDLAFIA 69

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--- 114
           LHG  GEDG +QA+LEL+  PYT S  LA   +MDK+ SK+     GVP    +      
Sbjct: 70  LHGGEGEDGRIQALLELMGKPYTGSSPLACGFAMDKVLSKKYWQGIGVPTPTYLAFRAPD 129

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +  ++ P ++KP + GS++GI        +   L ++    +   +L+EQ++ 
Sbjct: 130 ASDIDAIEDELAYPVIVKPSREGSTIGINKANDRTQLESALAKAR--EYDSDVLVEQFIA 187

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           G E T  ++ D +  V  +        Y Y+ KY + ++ ++LP+ +  D    VQ++A 
Sbjct: 188 GPEFTVTIIDDVAYPVIGLKASDEHELYDYDAKYIANDTQYLLPSGLLEDDELYVQKIAL 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+Q++GC G  R D + D      + LE+N  PGMT  S+ P  AAY   S+  L+  +
Sbjct: 248 DAYQSLGCSGWGRVDVMQDQA-GVFWVLEVNTSPGMTSHSLVPMSAAYVDISYSALVEKI 306

Query: 293 VEDA 296
            + A
Sbjct: 307 AQAA 310


>gi|11345403|gb|AAG34691.1|AF310956_6 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|1730460|emb|CAB05883.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|1763668|gb|AAB39760.1| D-alanine:D-alanine ligase-related protein [Enterococcus faecium]
 gi|33336052|gb|AAQ12894.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  171 bits (433), Expect = 9e-41,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|56123462|gb|AAV74570.1| D-alanine:D-lactate ligase [Clostridium sp. MLG101]
          Length = 343

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|29468046|gb|AAN60573.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 141/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|186686633|ref|YP_001869829.1| D-alanyl-alanine synthetase A [Nostoc punctiforme PCC 73102]
 gi|229485969|sp|B2J0J6|DDL_NOSP7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|186469085|gb|ACC84886.1| D-alanine--D-alanine ligase [Nostoc punctiforme PCC 73102]
          Length = 366

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 89/354 (25%), Positives = 151/354 (42%), Gaps = 58/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLVLAHL------- 49
           + +L GG S E EVS+ S +A A AL      + +++    + +    +           
Sbjct: 6   VGLLFGGRSGEHEVSIKSARAIAKALSVDENASKYEILPFYIQKDGRWLAGEAPQKVLET 65

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F VLHG  GEDG +Q +L L
Sbjct: 66  GSPLLEAEQSTSEGNLTSNPQVQTLSKWESPSQVAQVDIWFPVLHGPNGEDGTIQGLLTL 125

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------- 125
           +++P+  SG+L SA+ MDK+  K      G+       + R  + S   +          
Sbjct: 126 MQVPFVGSGVLGSAMGMDKIAMKMTFEQAGLAQVKYKAITRAQVWSNPCVFPKLCDEIEA 185

Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P  +KP   GSS+GI  ++  Q +   L  ++S++    +        +E      
Sbjct: 186 ALGYPAFVKPANLGSSVGIAKVRSRQELEAALDNAASYDRRLVVEAGVVAREVECAVLGN 245

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V       SDFY YE KY+   +  ++PA IP  I +++Q +A  A  A+   G
Sbjct: 246 DQPQASVVGEISYDSDFYDYETKYTEDRADLLIPAPIPDAIARQIQDMALQAFAAVDAAG 305

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF +   +++V   EIN  PG T  S++P++ A++G SF EL+  +++ A
Sbjct: 306 LARVDFFYVEATQEVLINEINTLPGFTATSMYPQLWAHSGVSFPELVDRLIQLA 359


>gi|71275120|ref|ZP_00651407.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|170731109|ref|YP_001776542.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
 gi|71163929|gb|EAO13644.1| D-alanine--D-alanine ligase [Xylella fastidiosa Dixon]
 gi|167965902|gb|ACA12912.1| D-alanine--D-alanine ligase [Xylella fastidiosa M12]
          Length = 320

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +LASALSMDK+R+KQV  + G+P            
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLASALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  Q     
Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H  +GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 258 FH-GVGCRGWGRVDVMRERSSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|329122144|ref|ZP_08250752.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
 gi|327466951|gb|EGF12467.1| D-alanine-D-alanine ligase [Dialister micraerophilus DSM 19965]
          Length = 314

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++     V   L  L  ++ F  LH
Sbjct: 11  ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 71  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 130

Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      + P V+KP   GS++GI ++K+   +   + +        ++L+E+Y+D
Sbjct: 131 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRVFKVE--SRILVEEYLD 188

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM   ++ V     P S  Y +  KY+   + +++PA I  ++  E+Q +A  
Sbjct: 189 GEEFTVPVMNGKAMPVI-QICPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 247

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +    C G+ R D      +   + LE N  PGMT  S+ P+ AA  G SF +L   ++
Sbjct: 248 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 306

Query: 294 EDASCLR 300
           E A   +
Sbjct: 307 EGAGLNK 313


>gi|308272716|emb|CBX29320.1| D-alanine--D-alanine ligase [uncultured Desulfobacterium sp.]
          Length = 312

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 101/299 (33%), Positives = 164/299 (54%), Gaps = 13/299 (4%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGE 64
           GGIS EREVS  SG     AL+   + V + D    +  +++     D A  +LHG FGE
Sbjct: 3   GGISVEREVSRKSGDQVYDALDKTKYDVIRYDPASQLLHLVSDSSNIDFALIILHGPFGE 62

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDS 120
           DG +Q +L+LL+IPY  SG+L SA++M+K  +KQ+    G+PV P I+            
Sbjct: 63  DGTIQGLLDLLDIPYQGSGVLGSAVAMNKFAAKQLYEQSGIPVPPYIMIKKGDPVEYKTC 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-- 178
           +  +  P+++KP+ GGSS+G+ ++K D+S    +  + S    D +LIE +++GIE+T  
Sbjct: 123 EKRLGSPFIVKPVSGGSSIGVSIVKSDKSFNEAVESAFSC--DDTVLIETFIEGIEITGG 180

Query: 179 CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                +         +P     F+ Y  KY +  +  + PA+I   + ++ Q  A +AH+
Sbjct: 181 VIGNDELETLPIVEIIPDKAFKFFDYTAKYKTGATKEICPAQIDDTLTQQAQTYAKMAHK 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           A+ C+G SR+D +     ++++ LE N  PGMT  S+ P+ A  AG SF +LL  ++E 
Sbjct: 241 ALFCKGYSRTDMIL--SGKEIYVLETNTIPGMTSTSLLPQAAQVAGISFSQLLDKLIEL 297


>gi|55709831|gb|AAV58816.1| vanB [Clostridium sp. CCRI-9842]
 gi|56123450|gb|AAV74564.1| D-alanine:D-lactate ligase [Clostridium sp. MLG080-1]
 gi|56123452|gb|AAV74565.1| D-alanine:D-lactate ligase [Ruminococcus sp. MLG080-3]
          Length = 342

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|304396878|ref|ZP_07378758.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
 gi|304355674|gb|EFM20041.1| D-alanine/D-alanine ligase [Pantoea sp. aB]
          Length = 365

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 143/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNILEAIDKTRFDVVLLGIDKQGHWRLNDASNFLLNAENPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHAAEDVALVPGKTQQQIITRHNAHPLSQIDVIFPIVHGTLGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++          + V  +   +            P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDFTKRLLRDAGLNVAPWLSVTQAQRAHLDPEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  +   +   ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVDSIEEFDAALALAF--SFDRKVLIEQGIKGREIECAVLGNDAPEASP 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I  +    ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYISENGAQTVVPAAIAAETSDAIRDVAIKAFTALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+R+L+  +++ A
Sbjct: 304 FLTDA-GEIIVNEVNTLPGFTNISMYPKLWQAAGLSYRDLISRLIDLA 350


>gi|284032723|ref|YP_003382654.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283812016|gb|ADB33855.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 377

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 79/360 (21%), Positives = 130/360 (36%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE  +S  +      A++   + V  + +  S   VL    PD        
Sbjct: 14  VAVVFGGRSSEHAISCITAANVLQAIDRDKYDVVPVGITTSGHWVLESADPDRLSITDGK 73

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F +LHG +GEDG +Q +LE+ +I
Sbjct: 74  LPEVDVTAAPVLFGADRELVVSEPDQVPSTLGEVDVVFPLLHGPWGEDGTLQGLLEMSDI 133

Query: 78  PYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYV 129
            Y  SG+LASA+ MDK   K V             +         +    +   +  P  
Sbjct: 134 RYVGSGVLASAVGMDKHYMKVVFAAAGLEVGPYVVIRDRDWTRDPQACRTAVDQLGYPVF 193

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSSLGI  +     +   + ++ + +    +              + G      
Sbjct: 194 VKPARGGSSLGISKVTSLDELDAAIAEARAHDPKVIVEASVKNPREIEVGVLGGLNGGLP 253

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL----------PAKIPLDIYKEVQRLAFLAHQAIG 239
                 +         +    + ++           PA +P  I  E++  A  A  AI 
Sbjct: 254 QVSVCGEVAVSGGGHDFYDFETKYLPEGEQYTALSVPADLPEQIAAEIRAKALTAFDAIE 313

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             G++R DF  D    +V   EIN  PG TP S+FP + A +G  +  L+  ++  A   
Sbjct: 314 GEGLARVDFFVDE-DGRVLINEINTMPGFTPTSMFPRLWAASGMDYPSLVDHLLTLAQTR 372


>gi|258433599|ref|ZP_05688672.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
 gi|257849330|gb|EEV73309.1| D-alanyl-alanine synthetase A [Staphylococcus aureus A9299]
          Length = 356

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGVKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|154684959|ref|YP_001420120.1| D-alanyl-alanine synthetase A [Bacillus amyloliquefaciens FZB42]
 gi|190359113|sp|A7Z1L3|DDL_BACA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|154350810|gb|ABS72889.1| Ddl [Bacillus amyloliquefaciens FZB42]
          Length = 354

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 141/342 (41%), Gaps = 53/342 (15%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------- 45
            GG S+E  VSL +  A   AL    F +  I +                          
Sbjct: 2   YGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEKGEWQRGPLLTEPVSNVKMLQLEQ 61

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F +LHG  GEDG +Q +LELL +PY  +G+L
Sbjct: 62  NGESFALSALNREMFPEASPDEKAPIDVVFPLLHGPNGEDGTIQGLLELLNVPYVGNGVL 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           AS+  MDK+  K + +  G+P        +              +  +  P  +KP   G
Sbjct: 122 ASSAGMDKVIMKHLFAQAGLPQAKYAAFLKKDWKQTPDSCLQQVEKELGYPCFVKPANLG 181

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAV 194
           SS+GI   +  + +      +    +  ++++E+ + G E+        +          
Sbjct: 182 SSVGISKCRNREELEKAFELAF--EYDRKIVVEEGIAGREIEIGVLGNDEPKCSAVGEIA 239

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK+DFY Y+ KY   ++  ++PA++  + Y E+  +A  A +AI   G+ R+DF      
Sbjct: 240 PKTDFYDYKAKYEDGDTDLMIPAQVTDEQYAEISEMAIKAFKAIDGSGLVRADFFLT-ND 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG TP S+FP +   AG  + +L+  +VE A
Sbjct: 299 GQVLINEVNTMPGFTPFSMFPLLWKEAGVDYSDLIEQLVELA 340


>gi|82542872|ref|YP_406819.1| D-alanyl-alanine synthetase A [Shigella boydii Sb227]
 gi|81244283|gb|ABB64991.1| D-alanine-D-alanine ligase A [Shigella boydii Sb227]
 gi|320187588|gb|EFW62271.1| D-alanine--D-alanine ligase [Shigella flexneri CDC 796-83]
 gi|332098498|gb|EGJ03464.1| D-alanine--D-alanine ligase [Shigella boydii 3594-74]
          Length = 364

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLRLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|297589853|ref|ZP_06948493.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
 gi|297576981|gb|EFH95695.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MN8]
          Length = 393

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|251794848|ref|YP_003009579.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247542474|gb|ACS99492.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 375

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 93/352 (26%), Positives = 157/352 (44%), Gaps = 59/352 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50
            ++ GG S E +VSL +  A    L+ A ++++   + R                +  L+
Sbjct: 8   GLIYGGKSGEHDVSLRTAFAVMGELDYAKYEITPFYITRLGEWRVGSMLGGQPGAIDELR 67

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F +LHG FGEDG +Q +LE+ 
Sbjct: 68  LAPVDGAPVPIVPDLPLAPLLDRLAGGALPGGGQPIDVVFPLLHGTFGEDGTIQGLLEIA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISP 126
           +IPY  +G+LASA  MDK+  K++ +  G+P C     NR   +          +  +  
Sbjct: 128 DIPYVGAGVLASAAGMDKITMKKIFAYEGLPQCVFRYFNRAQWEKDASFFIMECEVALGY 187

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI   K    +   +  +       ++++E++VD  E+   V+G+  
Sbjct: 188 PCFVKPSNLGSSVGISKAKNRDELIAAIDFAF--RFDRRVIVEEFVDAREIEVSVLGNDD 245

Query: 187 LDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             ++      P ++FY Y+ KY    ST  +PA IP      V+ +A  A  AI   G+S
Sbjct: 246 PKISVPGEIAPSNEFYDYKAKYVDGKSTIHIPANIPNKTADAVRDMALRAFLAIDGAGLS 305

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R DF       ++F  E+N  PG TP+S++P M   +G  +++LL  +++ A
Sbjct: 306 RVDFFLRKTDGQLFINEVNTMPGFTPISMYPLMWKESGLPYKDLLDKLIDLA 357


>gi|49484308|ref|YP_041532.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282904750|ref|ZP_06312624.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|282906428|ref|ZP_06314279.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|295428670|ref|ZP_06821296.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|56748623|sp|Q6GEZ1|DDL_STAAR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|49242437|emb|CAG41151.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|282330378|gb|EFB59896.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|282594783|gb|EFB99760.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           C160]
 gi|295127340|gb|EFG56980.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|315193242|gb|EFU23640.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           CGS00]
          Length = 356

 Score =  171 bits (433), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|168786212|ref|ZP_02811219.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
 gi|261223856|ref|ZP_05938137.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261256064|ref|ZP_05948597.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           FRIK966]
 gi|189373636|gb|EDU92052.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC869]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ   G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGFKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|157369610|ref|YP_001477599.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
 gi|157321374|gb|ABV40471.1| D-alanine--D-alanine ligase [Serratia proteamaculans 568]
          Length = 367

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHINDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSNKNVALIPGQEKQQLIESGSQGALGQLDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ + P +                  +  P  +K
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAIAPFVTLTRSNRAKFDFEQLSERLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVQDRAGFEAAVALAF--SFDHKVLVESAIVGREIECAVLGNDEPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N        PA I  ++  +++ +A  A +A+ C G++R D 
Sbjct: 244 CGEIVLSDAFYSYDTKYINEQGAQVIVPAAIEPEVSDKIRDVALKAFRALECFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++ A +G S+ +L+  ++E A
Sbjct: 304 FLTP-DNNVVINEINTLPGFTNISMYPKLWAASGVSYSQLITRLIELA 350


>gi|331651307|ref|ZP_08352332.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
 gi|331051048|gb|EGI23100.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M718]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 153/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|304437324|ref|ZP_07397283.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
 gi|304369580|gb|EFM23246.1| UDP-N-acetylmuramate--L-alanine ligase [Selenomonas sp. oral taxon
           149 str. 67H29BP]
          Length = 785

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 102/310 (32%), Positives = 165/310 (53%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  SG A   AL   G+    ++++  +    +  L P + FN LH
Sbjct: 479 IVVVMGGPSSEAEVSRRSGAAILRALCAKGYPAVGMELNPATFAEEIQALHPAIVFNALH 538

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ------VVSSCGVPVCPSILV 113
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK+ +K+      + +   +    S   
Sbjct: 539 GKYGEDGILQGTLDMLGIPYTGSGVRAAALTMDKIMAKRVLAAEDIPTPRCMSFYASERT 598

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                + +   S P V+K  + GSS+G+ ++ +D+ +   L  +   ++GD++LIE++++
Sbjct: 599 ADTPREIRTAFSLPLVVKAPEQGSSIGVYIVTRDEELSPALDAAF--SYGDEVLIEEFIE 656

Query: 174 GIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V G      +         S  Y Y+ KY+   STH++PA +      EV++L
Sbjct: 657 GRELTVAVWGTPAAAEVMPVIEIRSVSGRYDYDSKYTPGASTHIVPAPLSDACRSEVEQL 716

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A+ A GC G++R D L      + + +E+N  PGMT  S+ P+ A   G  F EL  
Sbjct: 717 ARRAYAACGCSGLARVDLLLSAE-NRPYVIELNAVPGMTETSLVPDAARALGIEFPELCE 775

Query: 291 WMVEDASCLR 300
            ++  A   R
Sbjct: 776 RILALAGYRR 785


>gi|89099476|ref|ZP_01172352.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
 gi|89085862|gb|EAR64987.1| D-alanylalanine synthetase [Bacillus sp. NRRL B-14911]
          Length = 357

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 141/339 (41%), Gaps = 45/339 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VS+ +  A   AL+   F +  + +      V                
Sbjct: 6   GLLYGGKSAEHKVSMQTALAVIKALDLEKFDIYPVYITEEGEWVKGPMLEAPAESVKQLE 65

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F +LHG  GEDG VQ +LELL +PY  +G+LA
Sbjct: 66  FSQGEAMSPAALAPAMFKSAEESSFDVIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGS 137
           S+  MDK+  K + +  G+P    +   R                 +  P  +KP   GS
Sbjct: 126 SSAGMDKVIMKNIFAQAGLPQVNYVWFVRSEWQKAGETAYEKVEEELGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI      + +     ++  ++    +        IEL      +    V    VPK 
Sbjct: 186 SVGISKCTNREELAAAFEEAFQFDRKIIVEEGVTAREIELGVLGNDEPECSVAGEIVPKK 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY   ++  ++PA+I  + Y  +  ++  A +A+ C G+ R+DF       KV
Sbjct: 246 DFYDYKAKYEDGDTAMIIPAEITEEEYSTLNEMSIRAFKALDCSGLVRADFFLT-RDGKV 304

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG TP S+FP +  + G  + +L+  +V  A
Sbjct: 305 MINEVNTMPGFTPFSMFPLLWKHTGVEYPQLIERLVNLA 343


>gi|84498310|ref|ZP_00997107.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
 gi|84381810|gb|EAP97693.1| D-alanylalanine synthetase [Janibacter sp. HTCC2649]
          Length = 382

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 153/362 (42%), Gaps = 65/362 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS ++  +  SAL+   + V  I + +    VLA   P         
Sbjct: 20  VALVFGGRSSEHAVSCATAASVMSALDPERYDVIPIGIAKDGSWVLAPNDPEPLRLAPGH 79

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L+L
Sbjct: 80  IPEVDASGPSVLVPTSATARHLIVHEPGAAPRELNEVDVVFPLLHGPFGEDGTIQGMLDL 139

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            ++ Y  SG+ ASA+ MDK   K V ++ G+PV P  ++                  +  
Sbjct: 140 ADVRYVGSGVTASAVMMDKHMMKVVFAAAGLPVGPYTVITDREWLRDPEAALDAVGALEF 199

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +     +   +  +    H  ++++EQ + G E+ CGV+    
Sbjct: 200 PVFVKPARAGSSMGISKVDSPDGLRAAVEAAR--EHDPKVIVEQGIVGREIECGVLDGHG 257

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAI 238
            D    +            +    + +          PA +  DI +++ ++A +A  A 
Sbjct: 258 TDAPRTSPLGECIVVKGHAFYDFEAKYLADDDIRLEAPADVAPDIAEQIAQMAVIAFTAA 317

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G++R DF     +  +   EIN  PG TP S++P M A AG ++ +L+  ++  A  
Sbjct: 318 GCEGLARCDFFLT-DTGDLLINEINTMPGFTPSSMYPRMWAAAGLTYPQLIDELIALAME 376

Query: 299 LR 300
            R
Sbjct: 377 RR 378


>gi|311071126|ref|YP_003976049.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
 gi|310871643|gb|ADP35118.1| D-alanyl-alanine synthetase A [Bacillus atrophaeus 1942]
          Length = 361

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 143/345 (41%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG S+E  VSL +  A   AL    F +  I +                       
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVTKALNTEKFDIHPIYITEEGEWQRGARLTEPVSNVKMLQ 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    +   D+ F +LHG  GEDG +Q +LELL IPY  +
Sbjct: 66  LEQNGSSFSPAALNKEMFPGDSSKENEAIDVVFPLLHGPNGEDGTIQGLLELLNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           G+LAS+  MDK+  K +           +  +    S          +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLSQAKYAAFLKKDWSRSSEECCEQVEKELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ V G E+        +    V  
Sbjct: 186 NLGSSVGISKCRSREELEKAFELAF--QYDRKVVVEEGVIGREIEIGVLGNDEPKCSVVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK+DFY Y+ KY   ++  ++PA++  D Y ++  +A  A +AI   G+ R+DF   
Sbjct: 244 EIAPKTDFYDYKAKYEDGDTDLIIPAEVTDDQYAKISDMAIKAFKAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   AG  + +L+  +V+ A
Sbjct: 304 A-DGEVLINEVNTMPGFTPFSMFPLLWKEAGIEYADLIEQLVDLA 347


>gi|187367112|emb|CAQ51411.1| putative d-ala d-ala ligase [Prosthecobacter debontii]
          Length = 306

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 97/303 (32%), Positives = 150/303 (49%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG  +EREVS  + ++  +AL+  G +V ++DV       +      +A N++HG
Sbjct: 9   IAVLFGGPGNEREVSKKTAESVVAALKTKGAEVVEVDVH--GPDFVVPEGVFIAMNLIHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            FGEDG +QAILE   IPYT +G+ +S ++ DK  SK+   + GVP   S        + 
Sbjct: 67  TFGEDGQIQAILEERGIPYTGAGVQSSRIAFDKALSKEKFIAAGVPTPRSQNYKLDGSEP 126

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I+ P V KP + GSS+G+ + +  +          +  +G   L+E+++DG ELT G
Sbjct: 127 LS-ITIPLVSKPPREGSSVGVNICRTGEE--WAKGIEEALKYGTTTLVEEFIDGKELTVG 183

Query: 181 VMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           V+GD  L +  I            Y     +  + +  PA++     K VQ  A  A Q+
Sbjct: 184 VLGDQVLPIIHIEPVEGFYDINNKYPWMTGTGKTLYHCPAELDEATTKRVQDAALAAFQS 243

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G     R D +      + F LEIN  PGMT  S+ P+ AA  G  F +L + ++E + 
Sbjct: 244 CGTEVYGRVDVML-RNDGEPFVLEINTIPGMTSSSLLPKAAAAVGIDFPDLCVRIIELSL 302

Query: 298 CLR 300
             R
Sbjct: 303 AAR 305


>gi|257426222|ref|ZP_05602637.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428880|ref|ZP_05605274.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431489|ref|ZP_05607862.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257434199|ref|ZP_05610549.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257437112|ref|ZP_05613152.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282911649|ref|ZP_06319448.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|282914929|ref|ZP_06322709.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282920260|ref|ZP_06327984.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282925471|ref|ZP_06333125.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|293509001|ref|ZP_06667788.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|293510913|ref|ZP_06669612.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
 gi|293547515|ref|ZP_06672190.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|257270927|gb|EEV03100.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257274222|gb|EEV05739.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257277730|gb|EEV08400.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257280838|gb|EEV10983.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283505|gb|EEV13632.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           M876]
 gi|282312872|gb|EFB43273.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C101]
 gi|282316120|gb|EFB46501.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           C427]
 gi|282321132|gb|EFB51463.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           M899]
 gi|282324414|gb|EFB54727.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WBG10049]
 gi|290919635|gb|EFD96708.1| D-alanine- D-alanine ligase [Staphylococcus aureus subsp. aureus
           M1015]
 gi|291094705|gb|EFE24977.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           58-424]
 gi|291466198|gb|EFF08725.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           M809]
          Length = 356

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|312437503|gb|ADQ76574.1| D-alanine-D-alanine ligase [Staphylococcus aureus subsp. aureus
           TCH60]
          Length = 393

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 43  ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 102

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 103 HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 162

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 163 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 222

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 223 GISKCSNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 280

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 281 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 339

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 340 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 378


>gi|78355413|ref|YP_386862.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|123553397|sp|Q316H9|DDL_DESDG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78217818|gb|ABB37167.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 308

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 105/295 (35%), Positives = 158/295 (53%), Gaps = 5/295 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           ++ GG S ER+VSLS  +   +ALE  G +V+  D  R++  +L   +  D AF  LHG 
Sbjct: 5   LIAGGWSEERDVSLSGARGIHAALERLGHQVTLFDPCRTLAGLLEAAQAHDFAFLNLHGQ 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+LE   +PY  SG   S L+++K  +K+V    G+P    +        D 
Sbjct: 65  PGEDGLVQALLETAGVPYQGSGPAGSFLALNKAAAKEVFVRNGLPTPEWVFLPAHPGADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +   + P  IK   GGSSL +  +     +   L +      G + +IE  V+G+E+TCG
Sbjct: 125 EPPFAFPAFIKSNNGGSSLALHRVSCPGELARALDELF--TRGGEAIIEPAVEGVEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I    + F+ Y  KY+   +  + PA +P ++  +V+  A  AH+A+G 
Sbjct: 183 VLGDEALPPILIRPLGAGFFDYASKYTPGQAEELCPAPLPGEVTAKVREYALRAHRALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           RG SRSDF+  P    +  LE+N  PGMT  S+ P+ AA  G SF  L+  ++E 
Sbjct: 243 RGYSRSDFILTPA-GALSLLEVNTLPGMTATSLLPQEAAAVGISFDGLIGRLIEL 296


>gi|158336262|ref|YP_001517436.1| D-alanyl-alanine synthetase A [Acaryochloris marina MBIC11017]
 gi|190359103|sp|B0CEL5|DDL_ACAM1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158306503|gb|ABW28120.1| D-alanine--D-alanine ligase [Acaryochloris marina MBIC11017]
          Length = 352

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 156/339 (46%), Gaps = 43/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS++S KA   AL+ A     ++V    + ++           VL  
Sbjct: 6   VGLVFGGCSGEHEVSITSAKAVCGALQTAPNPDKYEVIPFYIHKNGCWQAGEVANQVLEM 65

Query: 49  LKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            KP                   D+ F +LHG  GEDG +Q +L+L+++PY  SG+L SA 
Sbjct: 66  GKPQDQAEEGSRWHFPEAAASIDVWFPILHGPNGEDGTIQGLLQLMQVPYVGSGVLGSAA 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------------ISPPYVIKPLKGGS 137
            MDK+  K V ++ G+P      V R  + S               I  P  +KP   GS
Sbjct: 126 GMDKIAMKTVFAAAGLPQVKYESVTREQVWSDPCVFKQVCDRIDETIGYPNFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  ++    +   L  ++S++    +        +E      G     V       S
Sbjct: 186 SVGISKVRSRLELEAALDSAASFDRRIVVEAGVVAREVECAVLGNGRPRASVVGEISFDS 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY YE KY+   ++  +PA +P DI +++Q +A  A  A+   G+SR DF +   + +V
Sbjct: 246 DFYDYETKYTEGRASLQIPAPLPADITEKIQEMAINAFIAVDAAGLSRVDFFYVESTGEV 305

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              EIN  PG T  S++P + + +G  F +L+  +++ A
Sbjct: 306 LINEINTLPGFTSTSMYPMLWSVSGVDFPKLVDRLIQLA 344


>gi|156935075|ref|YP_001438991.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
 gi|156533329|gb|ABU78155.1| hypothetical protein ESA_02926 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSEQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I             D +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFEDVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++E  + G E+ C V+G+ S   + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAF--EFDHKVVVETGIKGREIECAVLGNDSPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I  D+ ++++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVSSEFYSYDIKYIDDQAARVVVPADIAPDVNEKIRAIAIRAFQALECAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  ++EL+  ++E A
Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQELITRLIELA 350


>gi|313891488|ref|ZP_07825101.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
 gi|313120065|gb|EFR43244.1| D-ala D-ala ligase N-terminal domain protein [Dialister
           microaerophilus UPII 345-E]
          Length = 311

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 95/307 (30%), Positives = 154/307 (50%), Gaps = 11/307 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + VLMGG S E E+S  +GKA  +AL   G+ V  ++     V   L  L  ++ F  LH
Sbjct: 8   ITVLMGGPSDEAEISRKTGKAIVNALSGLGYSVVGLEYHPECVLKQLQELNTEIVFLALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LEL  IPYT SG+ +SA++MDK+ +  +    G+ +  S+        
Sbjct: 68  GKYGEDGTIQGLLELAGIPYTGSGVSSSAITMDKIFTAHIFKEQGIRMAKSMSFKEKEGI 127

Query: 117 ---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      + P V+KP   GS++GI ++K+   +   + +        ++L+E+Y+D
Sbjct: 128 DFVNNQILKNFNMPVVLKPACEGSTIGIEIVKESNDLKDAICRVFKVE--SRILVEEYLD 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  VM   ++ V     P S  Y +  KY+   + +++PA I  ++  E+Q +A  
Sbjct: 186 GEEFTVPVMNGKAMPVI-QICPHSGQYDFHSKYTKGATDYLVPAPISEELKSEMQLMAEK 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +    C G+ R D      +   + LE N  PGMT  S+ P+ AA  G SF +L   ++
Sbjct: 245 GYHVAECEGVVRFDMR-TDHNGVPYVLEANSIPGMTETSLVPKSAANIGISFAKLCEMIL 303

Query: 294 EDASCLR 300
           E A   +
Sbjct: 304 EGAGLNK 310


>gi|271499277|ref|YP_003332302.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
 gi|270342832|gb|ACZ75597.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech586]
          Length = 366

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG SSE EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P +                  +  P  IK
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAELGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +    +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEFEHAVELAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N       +PA +  D+++ ++ +A  A QA+ C+G++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAVMDDDVHQHIRDIALRAFQALECQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLDYTSLITQLIELA 350


>gi|119383949|ref|YP_915005.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119373716|gb|ABL69309.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 128/310 (41%), Positives = 191/310 (61%), Gaps = 23/310 (7%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG          +          G ACA  L  AG++V++++V   +   L  ++
Sbjct: 5   VAVLMGG----------TSSERSVSLSSGHACAEGLAKAGYRVARVEVRDDIAEKLLQIR 54

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           P + FN LHG  GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  S
Sbjct: 55  PSVVFNALHGTGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAES 114

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I+V+     + H++  PYV+KP+  GSS G+ +++     P  L  + + +    ++ E+
Sbjct: 115 IVVSAADASASHVMQLPYVLKPVADGSSCGVHIVRSG-EAPPQLAANEAESAD--VMAER 171

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV G ELTC V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R 
Sbjct: 172 YVPGRELTCAVLGGKALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRY 231

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           + +AH+AIGCRG++RSDF  DP + ++ WLEIN QPGMTP+S+ PE+AA+ G +F  L+ 
Sbjct: 232 SEIAHRAIGCRGVTRSDFRHDPDTGELIWLEINTQPGMTPISLLPEIAAHHGITFENLVS 291

Query: 291 WMVEDASCLR 300
           W++EDAS  R
Sbjct: 292 WIIEDASLRR 301


>gi|163938235|ref|YP_001643119.1| D-alanyl-alanine synthetase A [Bacillus weihenstephanensis KBAB4]
 gi|229009735|ref|ZP_04166958.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
 gi|229165216|ref|ZP_04293008.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|163860432|gb|ABY41491.1| D-alanine--D-alanine ligase [Bacillus weihenstephanensis KBAB4]
 gi|228618248|gb|EEK75281.1| D-alanine--D-alanine ligase [Bacillus cereus AH621]
 gi|228751530|gb|EEM01333.1| D-alanine--D-alanine ligase [Bacillus mycoides DSM 2048]
          Length = 362

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            +L GG S+E +VSL +  A   AL    F++  I +                       
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66

Query: 45  ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           ++           D+ F +LHG  GEDG VQ +LELL IPY  +
Sbjct: 67  MSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191
             GSS+GI      + +     ++       ++++E+ + G E+  GV    +    V  
Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348


>gi|323170460|gb|EFZ56110.1| D-alanine--D-alanine ligase [Escherichia coli LT-68]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+P+ I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPSAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|229131239|ref|ZP_04260145.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
 gi|228652230|gb|EEL08161.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST196]
          Length = 362

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            +L GG S+E +VSL +  A   AL    F++  I +                       
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66

Query: 45  ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           ++           D+ F +LHG  GEDG VQ +LELL IPY  +
Sbjct: 67  MSGEENTISPVSLSTEIIPTATSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191
             GSS+GI      + +     ++       ++++E+ + G E+  GV    +    V  
Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIIGREVEVGVLGNDEPKCSVVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGLPYPELIEELIRLA 348


>gi|194432541|ref|ZP_03064827.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|194419102|gb|EDX35185.1| D-alanine--D-alanine ligase A [Shigella dysenteriae 1012]
 gi|332085641|gb|EGI90805.1| D-alanine--D-alanine ligase [Shigella dysenteriae 155-74]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATTLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C ++G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAILGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  ++Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQSYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|332094526|gb|EGI99572.1| D-alanine--D-alanine ligase [Shigella boydii 5216-82]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|307312242|ref|ZP_07591878.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|331666726|ref|ZP_08367600.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
 gi|306907744|gb|EFN38246.1| D-alanine/D-alanine ligase [Escherichia coli W]
 gi|315059660|gb|ADT73987.1| D-alanine-D-alanine ligase A [Escherichia coli W]
 gi|320201621|gb|EFW76197.1| D-alanine--D-alanine ligase [Escherichia coli EC4100B]
 gi|323379775|gb|ADX52043.1| D-alanine/D-alanine ligase [Escherichia coli KO11]
 gi|331065950|gb|EGI37834.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA271]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|300918244|ref|ZP_07134849.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
 gi|300414587|gb|EFJ97897.1| D-ala D-ala ligase [Escherichia coli MS 115-1]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHERQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|218703662|ref|YP_002411181.1| D-alanyl-alanine synthetase A [Escherichia coli UMN026]
 gi|293403498|ref|ZP_06647589.1| ddl [Escherichia coli FVEC1412]
 gi|298379109|ref|ZP_06988990.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300900436|ref|ZP_07118606.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331661753|ref|ZP_08362676.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
 gi|218430759|emb|CAR11633.1| D-alanine-D-alanine ligase A [Escherichia coli UMN026]
 gi|291429351|gb|EFF02371.1| ddl [Escherichia coli FVEC1412]
 gi|298280222|gb|EFI21726.1| D-alanine-D-alanine ligase A [Escherichia coli FVEC1302]
 gi|300356082|gb|EFJ71952.1| D-ala D-ala ligase [Escherichia coli MS 198-1]
 gi|331060175|gb|EGI32139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA143]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDTQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|218688244|ref|YP_002396456.1| D-alanyl-alanine synthetase A [Escherichia coli ED1a]
 gi|218425808|emb|CAR06614.1| D-alanine-D-alanine ligase A [Escherichia coli ED1a]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|74310948|ref|YP_309367.1| D-alanyl-alanine synthetase A [Shigella sonnei Ss046]
 gi|73854425|gb|AAZ87132.1| D-alanine-D-alanine ligase A [Shigella sonnei Ss046]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|187731227|ref|YP_001879088.1| D-alanyl-alanine synthetase A [Shigella boydii CDC 3083-94]
 gi|187428219|gb|ACD07493.1| D-alanine--D-alanine ligase A [Shigella boydii CDC 3083-94]
 gi|320174503|gb|EFW49641.1| D-alanine--D-alanine ligase [Shigella dysenteriae CDC 74-1112]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPSKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|15800107|ref|NP_286119.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 EDL933]
 gi|15829685|ref|NP_308458.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. Sakai]
 gi|16128366|ref|NP_414915.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|24111677|ref|NP_706187.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 301]
 gi|30061806|ref|NP_835977.1| D-alanyl-alanine synthetase A [Shigella flexneri 2a str. 2457T]
 gi|89107252|ref|AP_001032.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|157155036|ref|YP_001461557.1| D-alanyl-alanine synthetase A [Escherichia coli E24377A]
 gi|157159898|ref|YP_001457216.1| D-alanyl-alanine synthetase A [Escherichia coli HS]
 gi|168749828|ref|ZP_02774850.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|168756907|ref|ZP_02781914.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|168761571|ref|ZP_02786578.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|168768316|ref|ZP_02793323.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|168776329|ref|ZP_02801336.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|168783231|ref|ZP_02808238.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|168800248|ref|ZP_02825255.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|170021246|ref|YP_001726200.1| D-alanyl-alanine synthetase A [Escherichia coli ATCC 8739]
 gi|170079968|ref|YP_001729288.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170684315|ref|YP_001742513.1| D-alanyl-alanine synthetase A [Escherichia coli SMS-3-5]
 gi|191166736|ref|ZP_03028563.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|193065214|ref|ZP_03046287.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|193068673|ref|ZP_03049634.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194428839|ref|ZP_03061374.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194438869|ref|ZP_03070954.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|195938560|ref|ZP_03083942.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
 gi|208808983|ref|ZP_03251320.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208815537|ref|ZP_03256716.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208822855|ref|ZP_03263173.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209399711|ref|YP_002269017.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209917592|ref|YP_002291676.1| D-alanyl-alanine synthetase A [Escherichia coli SE11]
 gi|215485463|ref|YP_002327894.1| D-alanyl-alanine synthetase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217326355|ref|ZP_03442439.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218552941|ref|YP_002385854.1| D-alanyl-alanine synthetase A [Escherichia coli IAI1]
 gi|218693840|ref|YP_002401507.1| D-alanyl-alanine synthetase A [Escherichia coli 55989]
 gi|218698715|ref|YP_002406344.1| D-alanyl-alanine synthetase A [Escherichia coli IAI39]
 gi|238899671|ref|YP_002925467.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253774637|ref|YP_003037468.1| D-alanyl-alanine synthetase A [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160447|ref|YP_003043555.1| D-alanyl-alanine synthetase A [Escherichia coli B str. REL606]
 gi|254791557|ref|YP_003076394.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|256024002|ref|ZP_05437867.1| D-alanyl-alanine synthetase A [Escherichia sp. 4_1_40B]
 gi|260842581|ref|YP_003220359.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|260853603|ref|YP_003227494.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|260866542|ref|YP_003232944.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|293408524|ref|ZP_06652363.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|293413632|ref|ZP_06656281.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|293418448|ref|ZP_06660883.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|297517452|ref|ZP_06935838.1| D-alanyl-alanine synthetase A [Escherichia coli OP50]
 gi|300818299|ref|ZP_07098510.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300820384|ref|ZP_07100536.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300903359|ref|ZP_07121287.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300930329|ref|ZP_07145741.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300936362|ref|ZP_07151290.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300947975|ref|ZP_07162120.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300957935|ref|ZP_07170104.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|301025474|ref|ZP_07189021.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|301025803|ref|ZP_07189310.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|301301524|ref|ZP_07207659.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301647295|ref|ZP_07247111.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|307137022|ref|ZP_07496378.1| D-alanyl-alanine synthetase A [Escherichia coli H736]
 gi|309794898|ref|ZP_07689319.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|312964607|ref|ZP_07778858.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|312970473|ref|ZP_07784654.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|331640894|ref|ZP_08342029.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331676046|ref|ZP_08376758.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331681772|ref|ZP_08382405.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|62288066|sp|P0A6J8|DDLA_ECOLI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288067|sp|P0A6J9|DDLA_ECO57 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|62288068|sp|P0A6K0|DDLA_SHIFL RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|12513221|gb|AAG54727.1|AE005217_5 hypothetical protein Z0477 [Escherichia coli O157:H7 str. EDL933]
 gi|145722|gb|AAA23671.1| D-alanine:D-alanine ligase A [Escherichia coli str. K-12 substr.
           W3110]
 gi|1657576|gb|AAB18104.1| D-alanine--D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|1786579|gb|AAC73484.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           MG1655]
 gi|13359888|dbj|BAB33854.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str. Sakai]
 gi|24050453|gb|AAN41894.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 301]
 gi|30040048|gb|AAP15782.1| D-alanine-D-alanine ligase A [Shigella flexneri 2a str. 2457T]
 gi|85674522|dbj|BAE76162.1| D-alanine-D-alanine ligase A [Escherichia coli str. K12 substr.
           W3110]
 gi|157065578|gb|ABV04833.1| D-alanine--D-alanine ligase A [Escherichia coli HS]
 gi|157077066|gb|ABV16774.1| D-alanine--D-alanine ligase A [Escherichia coli E24377A]
 gi|169756174|gb|ACA78873.1| D-alanine--D-alanine ligase [Escherichia coli ATCC 8739]
 gi|169887803|gb|ACB01510.1| D-alanine-D-alanine ligase A [Escherichia coli str. K-12 substr.
           DH10B]
 gi|170522033|gb|ACB20211.1| D-alanine--D-alanine ligase A [Escherichia coli SMS-3-5]
 gi|187768284|gb|EDU32128.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4196]
 gi|188015916|gb|EDU54038.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4113]
 gi|188999359|gb|EDU68345.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4076]
 gi|189355976|gb|EDU74395.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4401]
 gi|189362532|gb|EDU80951.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4486]
 gi|189368055|gb|EDU86471.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4501]
 gi|189377439|gb|EDU95855.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str. EC508]
 gi|190903247|gb|EDV62969.1| D-alanine--D-alanine ligase A [Escherichia coli B7A]
 gi|192927188|gb|EDV81809.1| D-alanine--D-alanine ligase A [Escherichia coli E22]
 gi|192958036|gb|EDV88478.1| D-alanine--D-alanine ligase A [Escherichia coli E110019]
 gi|194413142|gb|EDX29429.1| D-alanine--D-alanine ligase A [Escherichia coli B171]
 gi|194422163|gb|EDX38165.1| D-alanine--D-alanine ligase A [Escherichia coli 101-1]
 gi|208728784|gb|EDZ78385.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4206]
 gi|208732185|gb|EDZ80873.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4045]
 gi|208737048|gb|EDZ84732.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161111|gb|ACI38544.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           EC4115]
 gi|209744404|gb|ACI70509.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744406|gb|ACI70510.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744408|gb|ACI70511.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209744412|gb|ACI70513.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|209910851|dbj|BAG75925.1| D-alanine-D-alanine ligase [Escherichia coli SE11]
 gi|215263535|emb|CAS07865.1| D-alanine-D-alanine ligase A [Escherichia coli O127:H6 str.
           E2348/69]
 gi|217322576|gb|EEC31000.1| D-alanine--D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14588]
 gi|218350572|emb|CAU96260.1| D-alanine-D-alanine ligase A [Escherichia coli 55989]
 gi|218359709|emb|CAQ97250.1| D-alanine-D-alanine ligase A [Escherichia coli IAI1]
 gi|218368701|emb|CAR16441.1| D-alanine-D-alanine ligase A [Escherichia coli IAI39]
 gi|238860727|gb|ACR62725.1| D-alanine-D-alanine ligase A [Escherichia coli BW2952]
 gi|253325681|gb|ACT30283.1| D-alanine/D-alanine ligase [Escherichia coli 'BL21-Gold(DE3)pLysS
           AG']
 gi|253972348|gb|ACT38019.1| D-alanylalanine synthetase [Escherichia coli B str. REL606]
 gi|253976557|gb|ACT42227.1| D-alanylalanine synthetase [Escherichia coli BL21(DE3)]
 gi|254590957|gb|ACT70318.1| D-alanine-D-alanine ligase A [Escherichia coli O157:H7 str.
           TW14359]
 gi|257752252|dbj|BAI23754.1| D-alanine-D-alanine ligase A [Escherichia coli O26:H11 str. 11368]
 gi|257757728|dbj|BAI29225.1| D-alanine-D-alanine ligase A [Escherichia coli O103:H2 str. 12009]
 gi|257762898|dbj|BAI34393.1| D-alanine-D-alanine ligase A [Escherichia coli O111:H- str. 11128]
 gi|260450431|gb|ACX40853.1| D-alanine/D-alanine ligase [Escherichia coli DH1]
 gi|281599594|gb|ADA72578.1| D-alanine--D-alanine ligase A [Shigella flexneri 2002017]
 gi|284920187|emb|CBG33246.1| D-alanine:D-alanine ligase A [Escherichia coli 042]
 gi|291324976|gb|EFE64391.1| D-alanine-D-alanine ligase [Escherichia coli B088]
 gi|291433690|gb|EFF06663.1| D-alanine-D-alanine ligase [Escherichia coli B185]
 gi|291471702|gb|EFF14185.1| D-alanine-D-alanine ligase A [Escherichia coli B354]
 gi|299879945|gb|EFI88156.1| D-ala D-ala ligase [Escherichia coli MS 196-1]
 gi|300315374|gb|EFJ65158.1| D-ala D-ala ligase [Escherichia coli MS 175-1]
 gi|300395989|gb|EFJ79527.1| D-ala D-ala ligase [Escherichia coli MS 69-1]
 gi|300404654|gb|EFJ88192.1| D-ala D-ala ligase [Escherichia coli MS 84-1]
 gi|300452474|gb|EFK16094.1| D-ala D-ala ligase [Escherichia coli MS 116-1]
 gi|300458468|gb|EFK21961.1| D-ala D-ala ligase [Escherichia coli MS 21-1]
 gi|300461789|gb|EFK25282.1| D-ala D-ala ligase [Escherichia coli MS 187-1]
 gi|300527169|gb|EFK48238.1| D-ala D-ala ligase [Escherichia coli MS 119-7]
 gi|300529190|gb|EFK50252.1| D-ala D-ala ligase [Escherichia coli MS 107-1]
 gi|300843021|gb|EFK70781.1| D-ala D-ala ligase [Escherichia coli MS 124-1]
 gi|301074559|gb|EFK89365.1| D-ala D-ala ligase [Escherichia coli MS 146-1]
 gi|308121551|gb|EFO58813.1| D-ala D-ala ligase [Escherichia coli MS 145-7]
 gi|309700643|emb|CBI99939.1| D-alanine:D-alanine ligase A [Escherichia coli ETEC H10407]
 gi|310337122|gb|EFQ02260.1| D-alanine--D-alanine ligase [Escherichia coli 1827-70]
 gi|312290628|gb|EFR18506.1| D-alanine--D-alanine ligase [Escherichia coli 2362-75]
 gi|313646690|gb|EFS11149.1| D-alanine--D-alanine ligase [Shigella flexneri 2a str. 2457T]
 gi|313848548|emb|CAQ30849.2| D-alanine-D-alanine ligase A [Escherichia coli BL21(DE3)]
 gi|315135064|dbj|BAJ42223.1| D-alanyl-alanine synthetase A [Escherichia coli DH1]
 gi|315256200|gb|EFU36168.1| D-ala D-ala ligase [Escherichia coli MS 85-1]
 gi|315616714|gb|EFU97331.1| D-alanine--D-alanine ligase [Escherichia coli 3431]
 gi|320181640|gb|EFW56555.1| D-alanine--D-alanine ligase [Shigella boydii ATCC 9905]
 gi|320192788|gb|EFW67428.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. EC1212]
 gi|320638368|gb|EFX08082.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str. G5101]
 gi|320643749|gb|EFX12872.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str.
           493-89]
 gi|320649099|gb|EFX17677.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H- str. H
           2687]
 gi|320655992|gb|EFX23908.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. 3256-97
           TW 07815]
 gi|320662549|gb|EFX29938.1| D-alanyl-alanine synthetase A [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320665119|gb|EFX32212.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323152152|gb|EFZ38445.1| D-alanine--D-alanine ligase [Escherichia coli EPECa14]
 gi|323160514|gb|EFZ46462.1| D-alanine--D-alanine ligase [Escherichia coli E128010]
 gi|323164166|gb|EFZ49973.1| D-alanine--D-alanine ligase [Shigella sonnei 53G]
 gi|323178359|gb|EFZ63937.1| D-alanine--D-alanine ligase [Escherichia coli 1180]
 gi|323184795|gb|EFZ70166.1| D-alanine--D-alanine ligase [Escherichia coli 1357]
 gi|323938565|gb|EGB34814.1| D-alanine-D-alanine ligase [Escherichia coli E1520]
 gi|323943187|gb|EGB39343.1| D-alanine-D-alanine ligase [Escherichia coli E482]
 gi|323945367|gb|EGB41422.1| D-alanine-D-alanine ligase [Escherichia coli H120]
 gi|323963366|gb|EGB58928.1| D-alanine-D-alanine ligase [Escherichia coli H489]
 gi|323972229|gb|EGB67439.1| D-alanine-D-alanine ligase [Escherichia coli TA007]
 gi|324016623|gb|EGB85842.1| D-ala D-ala ligase [Escherichia coli MS 117-3]
 gi|324116864|gb|EGC10777.1| D-alanine-D-alanine ligase [Escherichia coli E1167]
 gi|326341135|gb|EGD64927.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1044]
 gi|326346089|gb|EGD69828.1| D-alanine--D-alanine ligase [Escherichia coli O157:H7 str. 1125]
 gi|331037692|gb|EGI09912.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H736]
 gi|331076104|gb|EGI47386.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H591]
 gi|331080974|gb|EGI52139.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli H299]
 gi|332341742|gb|AEE55076.1| D-alanine-D-alanine ligase A DdlA [Escherichia coli UMNK88]
 gi|332758117|gb|EGJ88442.1| D-alanine--D-alanine ligase [Shigella flexneri 2747-71]
 gi|332761807|gb|EGJ92084.1| D-alanine--D-alanine ligase [Shigella flexneri 4343-70]
 gi|332764672|gb|EGJ94902.1| D-alanine--D-alanine ligase [Shigella flexneri K-671]
 gi|332768638|gb|EGJ98819.1| D-alanine-D-alanine ligase A [Shigella flexneri 2930-71]
 gi|333003877|gb|EGK23412.1| D-alanine--D-alanine ligase [Shigella flexneri K-218]
 gi|333010817|gb|EGK30243.1| D-alanine--D-alanine ligase [Shigella flexneri K-272]
 gi|333021315|gb|EGK40568.1| D-alanine--D-alanine ligase [Shigella flexneri K-227]
 gi|333022055|gb|EGK41300.1| D-alanine--D-alanine ligase [Shigella flexneri K-304]
          Length = 364

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|325660968|ref|ZP_08149595.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
 gi|325472475|gb|EGC75686.1| hypothetical protein HMPREF0490_00327 [Lachnospiraceae bacterium
           4_1_37FAA]
          Length = 352

 Score =  171 bits (432), Expect = 1e-40,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 155/343 (45%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG SSE EVS  S     S ++   ++   I + +    +               
Sbjct: 8   VAVIFGGQSSEHEVSCKSAVTVISHIDRTKYEPVLIGITKEGCWLKVEDTEAIRNDTWRE 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +  ++ D+ F VLHG +GEDG +Q + EL +IPY   G
Sbjct: 68  NGKRAILSPDAGEHGILVLGDTVEKIQVDVIFPVLHGMYGEDGTIQGLFELAKIPYVGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K +V   G+     + ++ +            + ++  P  +KP K 
Sbjct: 128 VLASAVSMDKLYTKIIVDRLGIRQAKFVGIHAYELEEIDKALDKVEEVLPYPVFVKPSKA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193
           GSS G+   K  + +   LL+++   H  ++L+E+ + G E+ C V    +         
Sbjct: 188 GSSQGVNQAKDREELQAALLEAA--KHDTKILVEETIKGREIECAVLGGKNVKASDVGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                FY+YE KY++ +S      ++P    ++V+  A    +A+   G+SR DF  +  
Sbjct: 246 KAADTFYTYEAKYNNPDSKTDTHPELPEGALEKVREDAVAIFKAVDGFGLSRVDFFLEHG 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + +V + EIN  PG T +S++P +    G     L+  ++E A
Sbjct: 306 TNEVIFNEINTLPGFTNISMYPMLWREKGVDTTALVTELIELA 348


>gi|206896178|ref|YP_002247025.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
 gi|226729269|sp|B5Y8C8|DDL_COPPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|206738795|gb|ACI17873.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Coprothermobacter
           proteolyticus DSM 5265]
          Length = 304

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/305 (30%), Positives = 151/305 (49%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VL GG S ERE+SL SG+  A+ L   G +V  +D    +    L  LKPD  F  LH
Sbjct: 3   IVVLFGGTSPEREISLKSGENIAATLRARGHQVETLDTAVPNFVEQLMQLKPDCVFPALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----- 114
           G  GEDG +Q +L +L IPY  S + AS ++MDK  +K V    G+P    I V      
Sbjct: 63  GADGEDGKIQGLLSILHIPYVGSDVRASVITMDKYLTKLVALQSGIPTPSFIYVYDPHLV 122

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D +  +  P+++KP   GS++G+ +++      + L    ++   D+LL+E+++DG
Sbjct: 123 PDYWDVERKLGSPFIVKPCDVGSTIGLSLVRSASEYEVAL--EEAFRFSDRLLLEEFIDG 180

Query: 175 IELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            E+T G+       +       V     + Y+ KY    + HV    I ++  + +   +
Sbjct: 181 FEVTVGLFRLGGDFLVLPPIYVVKPDRIFDYDTKYKPGGAKHVYDLPISVEARERLTSYS 240

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G++R D++        + LEIN  PGMT  S+ P+   +AG  F E L  
Sbjct: 241 KRICKIVGIGGVARLDYIV--KDETPYLLEINSIPGMTAESLVPDEVRHAGRDFGEFLED 298

Query: 292 MVEDA 296
           +++DA
Sbjct: 299 LIKDA 303


>gi|317131747|ref|YP_004091061.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
 gi|315469726|gb|ADU26330.1| D-alanine/D-alanine ligase [Ethanoligenens harbinense YUAN-3]
          Length = 354

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 152/349 (43%), Gaps = 56/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG+SSE  VSL S  +  + +    F V  I + R     L              
Sbjct: 6   VAVLFGGMSSEHAVSLVSATSVIANIPRDRFDVVMIGITRDGEWRLFEGDVEKLAGSGWE 65

Query: 47  ----------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         ++ D+ F VLHG  GEDG VQ +L L  IP
Sbjct: 66  SDPSNRPAFIAPDSRVHGIVALSPDGRIETIRLDVVFPVLHGLNGEDGTVQGLLTLARIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129
           +   G+ ASA+ MDK  +K +  +  +P      V    +              +  P  
Sbjct: 126 FVGCGVTASAVCMDKAITKALCDTYQIPQAKWETVRVSDLKDNGKAVVERLEAHLGYPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI      +++   +  ++   H  +L+ E+ V+G E+ C V+G+    V
Sbjct: 186 VKPANAGSSVGISKAADRETLYKAIETAA--THDRKLVFEEAVNGREIECAVLGNEEPVV 243

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +      P ++FY Y  KY +  +  V+PA +P D+ + V++ A    + +GCRG++R D
Sbjct: 244 SCCGEIKPCNEFYDYNAKYLAGRTELVIPASLPKDVSERVRQTAMRVFRLLGCRGLTRMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F        V   E N  PG T +S++P++    G S+ ELL  ++  A
Sbjct: 304 FF-ALEDGTVLLNEPNTIPGFTSISMYPKLFEAGGISYGELLETLLRLA 351


>gi|291281284|ref|YP_003498102.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
 gi|209744410|gb|ACI70512.1| D-alanine-D-alanine ligase A [Escherichia coli]
 gi|290761157|gb|ADD55118.1| D-alanine--D-alanine ligase A [Escherichia coli O55:H7 str. CB9615]
          Length = 364

 Score =  171 bits (432), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVEAKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|319899154|ref|YP_004159247.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
 gi|319403118|emb|CBI76676.1| D-alanine--D-alanine ligase [Bartonella clarridgeiae 73]
          Length = 306

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 146/312 (46%), Positives = 212/312 (67%), Gaps = 23/312 (7%)

Query: 1   MAVLMGGI-----------SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49
           +AVLMGG+           S           ACA  LE  G+ V+++DVD  +  +L  L
Sbjct: 6   IAVLMGGVSSERSVSLSSGS-----------ACADVLEAHGYYVTRVDVDSRIASILEKL 54

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           +P +AFN LHG+FGEDG +Q ILE L+IPYTHSG++AS+L+MDK R+K + +S GVPV P
Sbjct: 55  QPHIAFNALHGSFGEDGCIQGILEYLKIPYTHSGVMASSLAMDKGRAKIIAASVGVPVAP 114

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S ++NRF +  +H + PPYVIKP+  GSS G++++  D+  P   + SS W + D++++E
Sbjct: 115 SYVMNRFAIGVKHPLEPPYVIKPVHEGSSFGVVIVLGDEECPPHNIASSEWKYEDEVIVE 174

Query: 170 QYVDGIELTCGVMGDASLDVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Y+ G ELTC V+GD  LDV EI       FY Y+ KY +  S H+ PA++ L+IY++VQ
Sbjct: 175 KYIPGRELTCAVLGDEVLDVCEIIPDQHFQFYDYDSKYKAGGSIHICPAQLSLNIYQKVQ 234

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R++  AHQAIGCRG+SRSDF F+  + ++ WLEIN QPGMT  S+ P++A  +G ++ ++
Sbjct: 235 RMSLAAHQAIGCRGVSRSDFRFNEETEELIWLEINTQPGMTVTSLVPDIAKASGRTYSDI 294

Query: 289 LLWMVEDASCLR 300
           + W+VEDASC+R
Sbjct: 295 VKWIVEDASCMR 306


>gi|182682480|ref|YP_001830640.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|182632590|gb|ACB93366.1| D-alanine--D-alanine ligase [Xylella fastidiosa M23]
 gi|307578761|gb|ADN62730.1| D-alanine--D-alanine ligase [Xylella fastidiosa subsp. fastidiosa
           GB514]
          Length = 320

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +L SALSMDK+R+KQV  + G+P            
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 141 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  Q     
Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 257

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 258 FH-SVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|28199733|ref|NP_780047.1| D-alanine--D-alanine ligase [Xylella fastidiosa Temecula1]
 gi|32129484|sp|Q87AG1|DDL_XYLFT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28057854|gb|AAO29696.1| D-alanine--D-alanine ligase B [Xylella fastidiosa Temecula1]
          Length = 304

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 153/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRMRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +L SALSMDK+R+KQV  + G+P            
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 125 AVEVRKAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  Q     
Sbjct: 183 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIAQLALAA 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            H ++GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 242 FH-SVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300

Query: 294 ED 295
           E 
Sbjct: 301 EQ 302


>gi|317129522|ref|YP_004095804.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474470|gb|ADU31073.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 371

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 155/347 (44%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE ++SL S K+   A++   +++  I +D++    L              
Sbjct: 14  VGIIFGGKSSEHQISLQSAKSIIEAIDKNKYELVLIGIDKNGKWYLLDPNNYLRNMDNPK 73

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F +LHG++GEDG +Q +L L+  P
Sbjct: 74  LIEMIPSDQRVNIVLGEHDCFFTTPDGRSLGNIDVIFPILHGSYGEDGSIQGLLRLMGKP 133

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKP 132
           +    +L SA+SMDK  SK+++S  G+ +            N      +  +  P  +KP
Sbjct: 134 FIGPSVLGSAVSMDKEVSKKLLSEAGLFIGKYFAYTKDRKGNIDYEKVKENLGTPVFVKP 193

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI  + + +   + + ++    + ++++IE+ + G E+ C V+G+     +  
Sbjct: 194 ANQGSSVGISKVYEKKKFYMAVDEAF--RYDNKIVIEEEIKGREIECAVLGNEDPIASLP 251

Query: 193 AVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                    Y      +N       +PA++  D  ++V++ A  A +A+ C G++R DF 
Sbjct: 252 GEVLFTDSFYSYDAKYINSGGVQLKVPAELDGDDVEKVKKEAIKAFKALQCNGVARVDFF 311

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +F  EIN  PG T +S++P++   +G  +++L+  M+  A
Sbjct: 312 LTKEGN-LFVNEINTLPGFTKLSMYPKLWEVSGLPYKDLVNKMIALA 357


>gi|119385134|ref|YP_916190.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
 gi|119374901|gb|ABL70494.1| D-alanine--D-alanine ligase [Paracoccus denitrificans PD1222]
          Length = 301

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 129/310 (41%), Positives = 191/310 (61%), Gaps = 23/310 (7%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
           +AVLMGG          +          G ACA  L  AG++V++++V   +   L  ++
Sbjct: 5   VAVLMGG----------TSSERSVSLSSGHACAEGLARAGYRVARVEVRDDIAEKLLQIR 54

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           P + FN LHG  GEDG VQ +LE L IPYTHSG++ASAL+M K+ +K V ++ GVPV  S
Sbjct: 55  PSVVFNALHGTGGEDGAVQGLLENLGIPYTHSGVMASALAMHKINAKHVAAAHGVPVAES 114

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I+V+     + H++  PYV+KP+  GSS G+ +++     P  L  + + +    ++ E+
Sbjct: 115 IVVSAADASASHVMQLPYVLKPVADGSSCGVHIVRSG-EAPPQLATNEAESAD--VMAER 171

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV G ELTC V+G  +L + EI      +Y +  KY    S H+ PA +P DI +++ R 
Sbjct: 172 YVPGRELTCAVLGGEALGIIEIVPKDGAWYDFSAKYEIGGSRHICPAVLPPDIEEKILRY 231

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           + +AH+AIGCRG++RSDF  DP + ++ WLEIN QPGMTP S+ PE+AA+ G +F +L+ 
Sbjct: 232 SEIAHRAIGCRGVTRSDFRHDPDTGELIWLEINTQPGMTPTSLLPEIAAHHGLTFEKLVS 291

Query: 291 WMVEDASCLR 300
           W+VEDAS  R
Sbjct: 292 WIVEDASLRR 301


>gi|119357463|ref|YP_912107.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides DSM 266]
 gi|166198477|sp|A1BH06|DDL_CHLPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119354812|gb|ABL65683.1| D-alanine--D-alanine ligase [Chlorobium phaeobacteroides DSM 266]
          Length = 363

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 157/351 (44%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S+E E+S+ S K+ A+ ++   F+V  + +                      
Sbjct: 6   VALIFGGKSTEHEISIISAKSIAAVIDPFRFQVLPLYITHEGKWFTGEFAENILQLDLAE 65

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              DLAF  LHG++GEDG +Q +L+   
Sbjct: 66  MLRSTSLDATGNTLRQMAMHTGQQGFDFDFFKAGIDLAFIALHGSYGEDGRIQGLLDTFG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPP 127
           IPYT  G+LASA++MDK  +K  V+  G+                        +   + P
Sbjct: 126 IPYTGCGVLASAVAMDKALTKLCVTEAGIATAPGITILSSEYFADPKSTQKSIEEQFTWP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDA 185
             +KP   GSS+GI  +     +   L  +    +  ++L+E+ + G E+   V      
Sbjct: 186 VFVKPASLGSSVGISKVHHIGELIAALETAC--RYDSKILVEKAMQGREVEVAVLGNNAP 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            + +T    P S+FY Y  KY    +   +PA+I  ++ ++V++ A  A++A+GCRG+SR
Sbjct: 244 EVSITGEIEPGSEFYDYADKYIHNAAKMYIPARISPELQEQVRKDALRAYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  S  +   E+N  PG T +S++P + A +G  F EL+  +++ A
Sbjct: 304 IDFFVDETSGTIVLNEVNTIPGFTDISMYPRLFAASGLPFNELVEKLLQFA 354


>gi|317125447|ref|YP_004099559.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
 gi|315589535|gb|ADU48832.1| D-alanine--D-alanine ligase [Intrasporangium calvum DSM 43043]
          Length = 394

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 144/362 (39%), Gaps = 65/362 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS ++      A++   + +  I V R    VL    P         
Sbjct: 32  VAIIFGGRSSEHAVSCATAAGVMRAIDRDKYDIVPIGVSRDGQWVLVADDPARFELTAGR 91

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+   +LHG FGEDG +Q  LEL
Sbjct: 92  TPEVLPDRAHVVLPLSTRDTALTVLEAGQPPRELGDVDVVLPLLHGPFGEDGTLQGFLEL 151

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            +I Y  SG+ ASA  MDK   K V +  G+PV P  ++      +           +  
Sbjct: 152 SDIRYVGSGVFASAAGMDKHYMKVVFAGHGLPVGPYAVITDRAWRADRAAALDSCAALDF 211

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +     +   + ++    H  ++++E  + G E+ C V+    
Sbjct: 212 PVFVKPARAGSSMGISKVDDPGLLEAAIERAR--EHDPKVIVEAGITGREIECAVLEGHG 269

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAI 238
                 +            +    + +          PA +P  +  EV+RL+  A +A+
Sbjct: 270 TQGPRTSQVGEVAVHDNHAFYDFEAKYLAEADVDLSCPADVPAHVSDEVRRLSAAAFEAL 329

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           GC G++R D  +     +V   EIN  PG TP S++P M A +G  +  L+  ++  A  
Sbjct: 330 GCEGLARVDCFY-AEDGRVLINEINTMPGFTPHSMYPRMWAASGLPYTALIDELISLALV 388

Query: 299 LR 300
            R
Sbjct: 389 RR 390


>gi|257457275|ref|ZP_05622446.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
 gi|257445197|gb|EEV20269.1| D-alanine--D-alanine ligase [Treponema vincentii ATCC 35580]
          Length = 367

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 85/351 (24%), Positives = 154/351 (43%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------HLK---- 50
           +A++ GG S E EVSL S      A+      V  I + ++    L       H++    
Sbjct: 3   IAIIYGGRSGEHEVSLVSASFVVRAIGSE-HTVYLIGITKNGEWYLQPSSLLGHIRKDTS 61

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F VLHG+FGEDG +Q + E+ ++
Sbjct: 62  AVLTIKCDKAARVAVIPGGGTAAGLSVNGTPIAADVVFPVLHGSFGEDGTIQGLFEMADL 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISP 126
           PY   G+LAS+ +MDK +SK +     +P+ P + V +F              ++  +  
Sbjct: 122 PYVGGGVLASSAAMDKEKSKIIWQHEHLPIVPFLCVRKFQWDNPKEREGFILHAEKELEY 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+G         +   + ++  W+    +        IE +     +  
Sbjct: 182 PLFVKPCRVGSSVGAGKASNRTELLQKMEEAFLWDSKVLIEACIAAREIECSVTGNDEYV 241

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           +      +P  +FY Y+ KY   +     +PA I  +  +E++ +A  A++A+   G++R
Sbjct: 242 VYTPGEIIPSHEFYDYDAKYIDPDGAQLKIPADIDDEQRREIRSIAGKAYRALDLTGLAR 301

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D  ++ ++  E+N  PG T +S+FP+M   +G  +REL++ + + A
Sbjct: 302 VDFFIDKKTKTIYLNEVNTIPGFTAISMFPKMCEASGMPYRELIMHLFDLA 352


>gi|229055075|ref|ZP_04195506.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
 gi|228721259|gb|EEL72784.1| D-alanine--D-alanine ligase [Bacillus cereus AH603]
          Length = 362

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            +L GG S+E +VSL +  A   AL    F++  I +                       
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWMRGERIEGEVTNVEALQ 66

Query: 45  ----------------VL------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                           ++           D+ F +LHG  GEDG VQ +LELL IPY  +
Sbjct: 67  MSGEENTISPVSLSTEIIPTVTSKQEDAIDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+         R   +          + ++  P  +KP 
Sbjct: 127 GVLASSAGMDKVVMKNIFAEAGLKQAKYASFIRSAWEKDRETAYEKVEEVLGYPCFVKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191
             GSS+GI      + +     ++       ++++E+ + G E+  GV    +    V  
Sbjct: 187 NLGSSVGINKCNDREELENAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             VPK DFY Y+ KY   ++  ++PA++  +    ++R A +A Q++   G++R+DF   
Sbjct: 245 EIVPKKDFYDYKSKYIDGDTALIIPAEMTEEESNVIKRDAIIAFQSLDGSGLTRADFFLT 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V+  E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 305 -KDGEVYINEVNTMPGFTPFSMFPLLWQHTGVPYPELIEELIRLA 348


>gi|323965327|gb|EGB60785.1| D-alanine-D-alanine ligase [Escherichia coli M863]
 gi|327254694|gb|EGE66310.1| D-alanine--D-alanine ligase [Escherichia coli STEC_7v]
          Length = 364

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEEYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I   ++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDMIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|77747741|ref|NP_635617.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|77761078|ref|YP_241339.2| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. 8004]
          Length = 368

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T               P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +    +  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   +       V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350


>gi|39931167|sp|Q8PDW3|DDLA_XANCP RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|21111185|gb|AAM39541.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
 gi|66571909|gb|AAY47319.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv. campestris
           str. 8004]
          Length = 373

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 11  VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAQESFLLDADDPS 70

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 71  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T               P  +K
Sbjct: 131 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +    +  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 191 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 248

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   +       V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 249 CGEVVVHDAFYSYQTKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 309 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 355


>gi|327395333|dbj|BAK12755.1| D-alanine--D-alanine ligase A DdlA [Pantoea ananatis AJ13355]
          Length = 365

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S K    A++   F+V  + +D+     L              
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQIIDRMDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++          + V  + + N            P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    +    L  +      +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAALELAF--RFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA IP  + + ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +     ++   E+N  PG T +S++P++   AG S+++L+  ++E A
Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350


>gi|303249381|ref|ZP_07335607.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
 gi|302489219|gb|EFL49184.1| D-alanine/D-alanine ligase [Desulfovibrio fructosovorans JJ]
          Length = 306

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 150/300 (50%), Gaps = 4/300 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           ++ GG SSEREVSLS       AL+  G +V   D+       +A  +  D AF  LHG 
Sbjct: 5   LVAGGWSSEREVSLSGAVQIGKALKSLGHEVVPCDLSDDFPGFVAAARICDFAFLNLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120
            GEDGL QA+L+   +PY  +G   S L+++K  SKQ+  S G+P      L        
Sbjct: 65  PGEDGLPQALLDAAGVPYQGAGPAGSFLALNKAASKQLFISHGLPTPRWDFLPTPPPAGY 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP+ +KP  GGSS+ + +++    +P  L +  +      L+ E    G+ELTC 
Sbjct: 125 APAFPPPWFVKPNSGGSSVYMSLVRDPAELPAALEKIFA-TGDAALIEEGLCGGMELTCA 183

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I     +F+ Y  KY    +  + PA IP  +  E+ RL+  AH A+G 
Sbjct: 184 VLGDEALPPILIRPKAGEFFDYASKYQPEAADEICPAPIPRALTDELGRLSLAAHAALGL 243

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G SR+DF+       +  LE+N  PGMTP S+ P  A  AG  F +L+  ++E     R
Sbjct: 244 TGYSRADFIHTDKHG-LMLLEVNTLPGMTPTSLLPRSARAAGLDFPQLIAKLMELGLARR 302


>gi|291618995|ref|YP_003521737.1| DdlA [Pantoea ananatis LMG 20103]
 gi|291154025|gb|ADD78609.1| DdlA [Pantoea ananatis LMG 20103]
          Length = 365

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S K    A++   F+V  + +D+     L              
Sbjct: 6   VGIVFGGKSSEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHLNDASNFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRTAKQVALIPGEPQNQVIDRKDAHPLSQLDVIFPVVHGTQGEDGSLQGLLRMASL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++          + V  + + N            P  IK
Sbjct: 126 PFVGSDVLGSAVSMDKDVTKRLLRDAGLKVAPWLSVTQAQMNNLDIEAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    +    L  +      +++LIE+ + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVTTAAAFRAALELAF--RFDNKVLIEKGIKGREIECAVLGNDYPEASP 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA IP  + + ++ +A  A  A+ C G++R D 
Sbjct: 244 CGEVVVSDAFYSYDTKYISETGAHTVIPADIPAAVDEAIREVALTAFTALSCFGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +     ++   E+N  PG T +S++P++   AG S+++L+  ++E A
Sbjct: 304 FYTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYQDLITRLIELA 350


>gi|206900336|ref|YP_002250669.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
 gi|206739439|gb|ACI18497.1| D-alanine--D-alanine ligase [Dictyoglomus thermophilum H-6-12]
          Length = 311

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 96/305 (31%), Positives = 170/305 (55%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL+G  SSE+E++  + +   +AL+  G+   +I +D +V   +     ++A    HG
Sbjct: 3   IGVLIGVKSSEKEIAFKTARNIVNALKLKGYDYIEIPIDENVVENIKKANINVAIISAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------- 111
            +GEDG +Q +LELL IPY  SG+LASAL++DK  +K++ +   +P    I         
Sbjct: 63  KYGEDGTIQGLLELLGIPYVGSGVLASALALDKTMAKKIFTFHNIPTPKWIELSKKELET 122

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 + +   +  P++IKP   GS++G+ +   ++ +   +  +    + + ++IE+Y
Sbjct: 123 KDLNNIVKNVSKLKKPWIIKPATQGSTIGLSLASTEEELLKGIELAF--KYDENIIIEEY 180

Query: 172 VDGIELTCGVM--GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + G E+T G+    +         +PK+ FY YE KY+   S H++PA++P ++Y++ Q 
Sbjct: 181 IKGKEITAGIYDINNPVCLPLIEIIPKTGFYDYETKYTPGLSDHIIPARLPKEVYEKAQG 240

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           L  LAHQA+GCR +SR D + +  +  ++ LE+N  PGMT  S++PE A   G  F EL+
Sbjct: 241 LGILAHQALGCRHLSRVDMIVEENTNHIYVLEVNTIPGMTETSLYPEAAKAFGIDFPELI 300

Query: 290 LWMVE 294
              ++
Sbjct: 301 DSFIK 305


>gi|82775721|ref|YP_402068.1| D-alanyl-alanine synthetase A [Shigella dysenteriae Sd197]
 gi|309786933|ref|ZP_07681546.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
 gi|81239869|gb|ABB60579.1| D-alanine-D-alanine ligase A [Shigella dysenteriae Sd197]
 gi|308925259|gb|EFP70753.1| D-alanine--D-alanine ligase [Shigella dysenteriae 1617]
          Length = 364

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALSPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAADLAFEFDHKVIVEQGLKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|56123446|gb|AAV74562.1| D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|56123464|gb|AAV74571.1| D-alanine:D-lactate ligase [Clostridium sp. MLG245]
 gi|56123466|gb|AAV74572.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 342

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|56123458|gb|AAV74568.1| D-alanine:D-lactate ligase [Clostridium sp. MLG055]
          Length = 342

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSXDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|322433980|ref|YP_004216192.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
 gi|321161707|gb|ADW67412.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX9]
          Length = 372

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 90/350 (25%), Positives = 148/350 (42%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG S E EVSL S  +   A++   ++V  I + +    +               
Sbjct: 8   VGVLFGGRSGEHEVSLLSANSILKAIDRKKYEVVPIGITKQGRWLGGDGAKGLLTGDSGL 67

Query: 46  -------------LAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                        +          D+ F VLHG FGEDG +Q +LEL ++ Y  SG+L S
Sbjct: 68  TLSASAQVTETGLIEQSGGVIGALDVIFPVLHGTFGEDGTIQGMLELADLAYVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           A  MDK   K++ ++ G+P  P + V R              +  +  P  +KP   GSS
Sbjct: 128 AAGMDKDVMKKLFAAAGLPQTPYLSVLRSEWKADAKGCRKRIEKALEYPLFVKPANLGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEIA 193
           +GI  +     +   +  ++ ++    +       G      E+           V    
Sbjct: 188 VGISKVHGRDELAAAMDLAAGFDRKLVVEQGVGGPGAKPRELEVAVLGNETLEASVVGEI 247

Query: 194 VPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           VP  +FY YE KY          ++PAK+     K+++ +A  A +A  C G++R DFL 
Sbjct: 248 VPAKEFYDYEAKYQMNGPDESVCIIPAKLSASEQKQMRAMAMEAFRACDCSGLARVDFLM 307

Query: 251 DP----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +P       K +  EIN  PG T +S++P++   +G  + EL+  ++  A
Sbjct: 308 EPAAKGKKAKFYLNEINTMPGFTSISMYPKLWGASGVGYTELIDRLIVLA 357


>gi|333008568|gb|EGK28036.1| D-alanine--D-alanine ligase [Shigella flexneri VA-6]
          Length = 364

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASATCMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGELVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|313893662|ref|ZP_07827230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
 gi|313441806|gb|EFR60230.1| D-ala D-ala ligase N-terminal domain protein [Veillonella sp. oral
           taxon 158 str. F0412]
          Length = 310

 Score =  170 bits (431), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +   + P V+K    GSS+G+ +++++  +   + ++    +   L++EQ++
Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAVTEAL--KYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V     P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVAVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTATSLVPKAANEMGIDFPTLCEKI 301

Query: 293 VEDASCLR 300
           +  AS  +
Sbjct: 302 LLTASIGK 309


>gi|303233440|ref|ZP_07320108.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
 gi|302480448|gb|EFL43540.1| D-ala D-ala ligase N-terminal domain protein [Atopobium vaginae
           PB189-T1-4]
          Length = 326

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 115/307 (37%), Positives = 165/307 (53%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDR-SVGLVLAHLKPDLAFNVL 58
           +AVL GG S ER++S+ SG  C  AL++AGF+ V   DV   S    LA  + D+ F  +
Sbjct: 11  VAVLAGGWSDERDISMQSGTECTKALQEAGFRHVELFDVKDLSFVSRLAAREFDVVFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG FGEDG +Q +LE L IPYT SG+LASALSM K  +K V  S  +P    I V     
Sbjct: 71  HGKFGEDGCIQGLLETLHIPYTGSGVLASALSMHKNMAKFVYRSANIPAPRDIYVPSHQV 130

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     H ++ PYV+KP   GSS G+ ++    ++   +  +   N G  +L+E+ 
Sbjct: 131 IDDELVQHITHDLTLPYVVKPTDNGSSFGVHLVSDAATLASAIASARGKNSG--VLVEER 188

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + G E+T  V+G  +     +   K +   Y+   K       HV+PA +    Y   Q 
Sbjct: 189 IVGTEITVPVIGTKNPHALPVVEIKYEAPIYDLDAKNEPAALHHVIPANLSPAAYSRAQE 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH+A+GC G+SRSDF+ D  + + + LE N  PGMT  S+ P+ A + G SF EL 
Sbjct: 249 LAVRAHRALGCTGVSRSDFIVDA-TGEPYILETNNIPGMTEHSLIPDAARHDGMSFSELC 307

Query: 290 LWMVEDA 296
            +++E A
Sbjct: 308 TYLIECA 314


>gi|188989640|ref|YP_001901650.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           campestris str. B100]
 gi|167731400|emb|CAP49575.1| D-alanine-D-alanine ligase A [Xanthomonas campestris pv.
           campestris]
          Length = 368

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+             
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILQALDPQRFEPVLIGIDKQGQWHLSAPESFLLDADDPS 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRHSGRGLAVLPGAASAQLRAVDAEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P     R T               P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFACFTRHTAAQADVQTLIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +     L  +    +  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSAEEFSAALELAL--RYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   +       V+PA I       +Q+ A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYIRDDGAATVIPADIDAHTQHRIQQCALQAYQALDCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWEASGLDYRSLVTRLIELA 350


>gi|320530969|ref|ZP_08032002.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
 gi|320136834|gb|EFW28783.1| UDP-N-acetylmuramate--alanine ligase [Selenomonas artemidis F0399]
          Length = 779

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 103/310 (33%), Positives = 165/310 (53%), Gaps = 13/310 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFNVLH 59
           + V+MGG S+E EVS  SG A   AL +  +    I+++  +    +  L+P L FN LH
Sbjct: 473 ITVVMGGPSTEAEVSRRSGAAILHALHEKNYPAVGIELNPATFAEEIKKLRPALVFNALH 532

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q  L++L IPYT SG+ A+AL+MDK  +K++ ++ G+           T  
Sbjct: 533 GKYGEDGVLQGTLDMLGIPYTGSGVRAAALTMDKTSAKRIFAAEGIATPRFRSFYAGTDT 592

Query: 120 SQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +         S P V+K  + GSS+G+ ++ ++  +   L ++   ++G ++L+E+++ 
Sbjct: 593 GKIAEEILAAFSLPVVVKAPEQGSSIGVYIVTEEDDLRSSLDEAF--SYGGEVLVEEFIA 650

Query: 174 GIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V G+               S  Y YE KY+   S H++PA I  +   EVQ L
Sbjct: 651 GRELTVVVWGETGHAEALPVIEITTTSGRYDYESKYTPGASAHLVPAPISPECTAEVQEL 710

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  A GC G++R D +    + K + +E+N  PGMT  S+ P+ A   G SF +L  
Sbjct: 711 AVRAFNACGCTGVARLDVMLSE-TEKPYAIEVNSVPGMTETSLVPDAARAVGLSFPDLCE 769

Query: 291 WMVEDASCLR 300
            ++E A   R
Sbjct: 770 KILEMAGYQR 779


>gi|229588254|ref|YP_002870373.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens SBW25]
 gi|229360120|emb|CAY46974.1| D-alanine--D-alanine ligase A [Pseudomonas fluorescens SBW25]
          Length = 364

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 144/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D++    L              
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKAGHWHLNDTSNFLLNQENPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKASQQLVETSGTGLLEHVDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I              + + +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGIAVTPFITLTRSNATRTSFDTAVNTLGLPMFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +      +++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVGTEAEYHAAVELAL--GFDEKVLVESAVKGREIECAVLGNEHPIASG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I  D  + ++ LA  A + +GC G++R D 
Sbjct: 244 CGEIVVSSGFYSYDSKYIDDQAAQVVVPAAISHDASERIRGLAIEAFEVLGCSGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++   AG S+ EL+  ++E A
Sbjct: 304 FLT-DDGNVLINEINSLPGFTRISMYPKLWQAAGMSYSELVSRLIELA 350


>gi|15837401|ref|NP_298089.1| D-alanine--D-alanine ligase [Xylella fastidiosa 9a5c]
 gi|9105695|gb|AAF83609.1|AE003919_20 D-alanine--D-alanine ligase B [Xylella fastidiosa 9a5c]
          Length = 320

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 21  VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 80

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +L SALSMDK+R+KQV  + G+P            
Sbjct: 81  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 141 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 198

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  +     
Sbjct: 199 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIARLALAA 257

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 258 FR-AVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 316

Query: 294 ED 295
           E 
Sbjct: 317 EQ 318


>gi|32130422|sp|Q9PF79|DDL_XYLFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 304

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 93/302 (30%), Positives = 152/302 (50%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+EREVSL SG+     L   G     +D   ++   L   + D  FNVLHG
Sbjct: 5   VAVLLGGTSAEREVSLLSGRNVLEVLRVRGVDAQSVDGVPALAQALVERRFDRVFNVLHG 64

Query: 61  NFGEDGLVQAI--LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           + G          ++   +PYT S +L SALSMDK+R+KQV  + G+P            
Sbjct: 65  HNGGGEDGVVQGLMQAFGVPYTGSDVLGSALSMDKVRTKQVWLALGLPTPRYASLSVCAT 124

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +  ++  P +IKP K GSS+G+  +   + +   +  ++   +  +LL+EQ ++
Sbjct: 125 AVEVRQAVEMLGFPVIIKPAKEGSSVGVSRVFALEHLEEAVALAA--RYEGELLMEQLIE 182

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++ + +L      VP+  +Y Y  KY + ++ +V P    +   +  +     
Sbjct: 183 GDELTVSILDEMALPSI-RIVPQGQWYDYNAKYLAEDTQYVCPGLDDVAEAEIARLALAA 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+GCRG  R D + +  S + F LE+N  PGMT  S+ P+ A+  G  F +L+  ++
Sbjct: 242 FR-AVGCRGWGRVDVMRERGSGRFFLLEVNTAPGMTTHSLVPKAASQLGMGFDDLVWRIL 300

Query: 294 ED 295
           E 
Sbjct: 301 EQ 302


>gi|256020350|ref|ZP_05434215.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332281524|ref|ZP_08393937.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
 gi|332103876|gb|EGJ07222.1| D-alanyl-alanine synthetase A [Shigella sp. D9]
          Length = 364

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|171913133|ref|ZP_02928603.1| D-alanine--D-alanine ligase [Verrucomicrobium spinosum DSM 4136]
          Length = 307

 Score =  170 bits (430), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 158/305 (51%), Gaps = 13/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF--NVL 58
           +AVL GG  SER VSL S ++   AL+  G +V +IDV  +   V      D+    N++
Sbjct: 8   IAVLKGGPGSERAVSLKSAESVVEALKSLGAEVVEIDVTATDFTV----PGDVVVAVNMI 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +QA+LE   + YT +G+  S ++ DK  SK+   + GVP   S ++    +
Sbjct: 64  HGTFGEDGQLQALLEKQGVAYTGAGVETSRVAFDKNLSKEKFVAGGVPTPQSQVLKLDGV 123

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    ++ P V+KP + GSS+G+ ++  ++ +   L  +    +G   L+E++VDG ELT
Sbjct: 124 DQL-RLTLPVVVKPPREGSSVGVHIVHTEEELATALADAK--QYGQDTLVEEFVDGKELT 180

Query: 179 CGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            GV+G  +L V  I            Y     +  + +  PA + ++  + VQ  A  A 
Sbjct: 181 VGVIGGEALPVIHIEPVSGFYDINNKYPWMSGTGKTNYHCPADLDIETTQRVQEAALAAM 240

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+G     R D +      + F LEIN  PGMT  S+ P+ A  AG  F +L+  ++E 
Sbjct: 241 KAVGVEVYGRVDVML-RKDGQPFVLEINTIPGMTVSSLLPKAARVAGLEFPQLMERIIEL 299

Query: 296 ASCLR 300
           +  +R
Sbjct: 300 SLEVR 304


>gi|283784195|ref|YP_003364060.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
 gi|282947649|emb|CBG87204.1| D-alanine:D-alanine ligase A [Citrobacter rodentium ICC168]
          Length = 364

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F+V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFEVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATRLAQVPGQHEHQLIDARTATPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P +             D +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDTGLNIAPFVTLSRANRHTFSFADIKARLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K           + ++    ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVG--VSKVTNEAQYAQAVALAFEFDHKVVVEQGIVGREIECAVLGNDRPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA I   I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPATIDPQINDKIRDIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLSYTDLISRLIELA 350


>gi|331671933|ref|ZP_08372729.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
 gi|331070922|gb|EGI42281.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA280]
          Length = 364

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P +  V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|311742955|ref|ZP_07716763.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
 gi|311313635|gb|EFQ83544.1| D-alanine-D-alanine ligase [Aeromicrobium marinum DSM 15272]
          Length = 356

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 92/338 (27%), Positives = 154/338 (45%), Gaps = 47/338 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK----------- 50
           AV+ GG SSE  VS  + +   +AL+   + V  I +      V    +           
Sbjct: 15  AVVFGGRSSEHGVSCLTAREVLAALDPDRYDVRPIGITTDGAWVEETARWDDLAPGTLPA 74

Query: 51  ---------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                           D  F +LHG +GEDG VQ +LE+ +I Y  +G+LASA+SMDK  
Sbjct: 75  VRADGPVFAWERLAEFDAVFPLLHGPWGEDGTVQGLLEMADIRYVGAGVLASAVSMDKPF 134

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKD 147
           +K V S+ G+P  P + +  +  + +          +  P  +KP + GSS G+ +++  
Sbjct: 135 TKTVFSAAGLPQIPYVTIRPWEWNRERSRVEARIRALGLPVFVKPARAGSSSGVAMVESW 194

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA--------VPKSD 198
             +   ++ +       ++++E +  G  EL CGV+                       D
Sbjct: 195 DDLDAAVVAAR--AFDPKVIVEAFARGKRELECGVLQGPDGRPVASVVGEITVAAESDHD 252

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY +E KY    S +++PA IP+ + + ++  A  A +A+GC G++R DF        + 
Sbjct: 253 FYDFEAKYLDGTSVNLVPADIPVTLSERIRTYAVQAFEAVGCEGLARVDFFLT--DDGLV 310

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG TP S+FP +   +G  + +L+  +V  A
Sbjct: 311 VNEINTMPGFTPFSMFPLLWEASGVRYEDLVDRLVRLA 348


>gi|297202608|ref|ZP_06920005.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
 gi|197709862|gb|EDY53896.1| D-alanylalanine synthetase [Streptomyces sviceus ATCC 29083]
          Length = 385

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 155/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITKDGRWALTADEPERMAITERR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESSEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWEQNESAARKKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +     +   + ++   +H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSGLDEAIAEAQ--SHDPKILVEAALRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P+   Y         ++  ++PA +  +   EVQ+LA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKYIDSTPGIVPAPLTPEETAEVQKLAVDA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G ++ EL+  ++E
Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPQMWEKSGIAYPELVDRLIE 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|8100679|gb|AAF72363.1|AF192329_24 VanB [Enterococcus faecalis]
          Length = 342

 Score =  170 bits (430), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 140/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ +    F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q + EL  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|310829666|ref|YP_003962023.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
 gi|308741400|gb|ADO39060.1| hypothetical protein ELI_4118 [Eubacterium limosum KIST612]
          Length = 510

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 145/341 (42%), Gaps = 44/341 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-----AHLK------ 50
            ++ GG S E EVS +S       ++   + ++ I + ++    +      ++K      
Sbjct: 169 GIVFGGQSGEHEVSRASACNVIEVIDKEKYDITLIGITKNGDWKVYTGDYKNIKDGSWEQ 228

Query: 51  -------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                               D+ F VLHG  GEDG +Q + EL+  PY   G+LASA  M
Sbjct: 229 DTDKIHADFSIFHDPIIQDVDVFFPVLHGPMGEDGTIQGLFELMNKPYVGCGVLASAAGM 288

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIV 143
           DK+ SK +  S G+PV P +   R   +               P  IKP   GSS+GI  
Sbjct: 289 DKVASKMLFESAGIPVGPYVYFKRRDWEKDPDRIIDDIAGRGFPVFIKPSNMGSSVGISK 348

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               +     + ++    +  ++++E +++  E+ C V+ +       I         + 
Sbjct: 349 AHNREEFIDGVNEAL--RYDHKIVVEGFLNAREIECAVLEENGEIKAAIPGEVVASKEFY 406

Query: 204 LKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              +  +        +PA+I   + ++++  A  A + I    +SR DF     +  ++ 
Sbjct: 407 DYEAKYSDNQDSKIVIPAQISDALLEKIREYAIKAFEVIDGSSLSRVDFFVTRATYNIYI 466

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            EIN  PG T +S++P+M    G S+ EL+  +++ A+  R
Sbjct: 467 NEINTMPGFTNISMYPKMWENMGVSYAELVEKLIQGAAVKR 507


>gi|251799340|ref|YP_003014071.1| D-alanine--D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247546966|gb|ACT03985.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 303

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 157/303 (51%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGGISSERE+SL +G+   + L+   ++V  I+++    L+      D A   LHG
Sbjct: 4   IGVIMGGISSEREISLLTGQEMIANLDRGKYEVVPIEINTKRDLIDKTAGIDFALLALHG 63

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFT 117
            +GEDG VQ  LE L IPY+  G+L+S++SMDK  +K+++   G+     I    +    
Sbjct: 64  KYGEDGTVQGTLESLGIPYSGCGVLSSSVSMDKELAKKLIRFDGILTADWINVASMEELA 123

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P V+KP  GGSS+   ++K    +   + ++  W   D ++IEQ+V G E+
Sbjct: 124 AANVERLGLPVVVKPNSGGSSIATRLVKTQDEVAEAVAEALKW--DDSVMIEQFVGGEEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC V+              S+F+ ++ KY    +T  +  ++P D+   V+  A   ++A
Sbjct: 182 TCAVLSGKL-LPIVSIKANSEFFDFDSKYQDGGATEEV-IELPADVQARVEASALGCYKA 239

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   SR D +        + LE N  PG+T  S+ P+ A  AG  F ELL ++++ + 
Sbjct: 240 LKCSVYSRIDMII--KDGVPYVLEANTLPGLTKNSLLPKAAKAAGIKFNELLDYIIDYSL 297

Query: 298 CLR 300
             R
Sbjct: 298 EER 300


>gi|307129501|ref|YP_003881517.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
 gi|306527030|gb|ADM96960.1| D-alanine--D-alanine ligase [Dickeya dadantii 3937]
          Length = 366

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG SSE EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGEWHVNDASNYLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSQNVALIPGQTHHQLIDTASASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P +                  +  P  +K
Sbjct: 126 PFIGSSVLGSAVSMDKDVTKRLLRDAGLQVAPFVTLTRANRARHPYDSVTAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +    +  ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVRNQAEFERAVDLAF--RYDHKVLVESAIVGREIECAVLGNDYPKASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N       +PA +  ++++ ++ +A  A Q + C+G++R D 
Sbjct: 244 CGEIVLHDEFYSYDTKYINEDGAAVAIPAAMDDEVHQHIRDIALRAFQTLDCQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P  ++V   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTP-DQQVVVNEVNTLPGFTNISMYPKLWEASGLGYTALITQLIELA 350


>gi|108763447|ref|YP_633878.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
 gi|108467327|gb|ABF92512.1| D-alanine--D-alanine ligase [Myxococcus xanthus DK 1622]
          Length = 326

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 101/301 (33%), Positives = 155/301 (51%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   ERE+SL +G+A  +ALE  G +V++I     +   L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREISLKTGEAVVAALESRGHQVTRIFAGPGLDRALRAAELDVAFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K+      +       V R     
Sbjct: 65  RMGEDGRVQGLLELLELPYTGSGVLASALAMNKPFAKRFFRLHNLATPHGYTVAREDAWR 124

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +      P V+KP  GGSS+G+ ++++ +++      + +   G + L+E+YV G E
Sbjct: 125 ALALHGDLGFPCVVKPACGGSSMGLALVREPEAL--AFAVAQASRFGGEALVERYVAGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   E+A P+   + ++ KY    +    P   P  +             
Sbjct: 183 VTVGILGGQVLGSCEVATPRE-GFDFDAKYKGGAAYFCPPRLSPTRVANVEALALAAYRA 241

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GCRG +R D +       V  LE+N  PG TP S+ P++AA AG  F  L   ++  A
Sbjct: 242 L-GCRGQARVDLMCSDTENDV-VLEVNTLPGFTPTSLLPKIAARAGLDFAALTERILALA 299

Query: 297 S 297
           +
Sbjct: 300 T 300


>gi|188492212|ref|ZP_02999482.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
 gi|188487411|gb|EDU62514.1| D-alanine--D-alanine ligase [Escherichia coli 53638]
          Length = 364

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P          N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFNTLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|323976140|gb|EGB71233.1| D-alanine-D-alanine ligase [Escherichia coli TW10509]
          Length = 364

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDANNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRTNRQNISFAEVKSKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEEYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAITPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|228989412|ref|ZP_04149401.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
 gi|228995607|ref|ZP_04155273.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|229003234|ref|ZP_04161072.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228758017|gb|EEM07224.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock1-4]
 gi|228764179|gb|EEM13060.1| D-alanine--D-alanine ligase [Bacillus mycoides Rock3-17]
 gi|228770359|gb|EEM18934.1| D-alanine--D-alanine ligase [Bacillus pseudomycoides DSM 12442]
          Length = 364

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 148/344 (43%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            +L GG S+E +VSL +  A   AL    F++  I +                       
Sbjct: 10  GLLYGGKSAEHQVSLQTALAAIKALNQEKFEIHPIYITEQGQWMRGERIEGEVTSVQALQ 69

Query: 45  ----------------VL-----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                           ++          D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 70  MNGEENAISPVSLSTEIIPSSSKQEEAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129

Query: 84  ILASALSMDKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           +LASA  MDK+  K +           +  +               + ++  P  +KP  
Sbjct: 130 VLASAAGMDKVVMKNIFAEAGLKQAKYASFIRSVWEKNCQAAYEKVEEVLGYPCFVKPAN 189

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   K  + +     ++       ++++E+ + G E+  GV    +    V   
Sbjct: 190 LGSSVGINKCKDREELEKAFEEAF--QFDRKIIVEENIVGREVEVGVLGNDEPKCSVIGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            VPK +FY Y+ KY   ++  ++PA++  +  K +QR A  A Q++   G++R+DF    
Sbjct: 248 IVPKKEFYDYKSKYIDGDTALIIPAEVTEEESKAIQRDAIRAFQSLDGAGLTRADFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  E+N  PG TP S+FP +  +    + +L+  ++  A
Sbjct: 307 KDGEVYINEVNTMPGFTPFSMFPLLWQHTDLPYPKLIEELIRLA 350


>gi|302554392|ref|ZP_07306734.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
 gi|302472010|gb|EFL35103.1| D-alanyl-alanine synthetase A [Streptomyces viridochromogenes DSM
           40736]
          Length = 385

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L    P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRTKYDVLPIGITKDGRWALTADAPERMAIIDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  QPSVDVLAESDEGGVILPVDPSNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P ++V                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYLVVRPREWRQDEQAARKRIV 198

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 199 DFAGDHGWPLFVKPARAGSSIGITKVDDLAGLDEAIAEAQ--RHDPKILVEAALRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P +  Y         ++  ++PA +  +   EVQRLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTPEETAEVQRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V+
Sbjct: 317 FEAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|242240647|ref|YP_002988828.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
 gi|242132704|gb|ACS87006.1| D-alanine/D-alanine ligase [Dickeya dadantii Ech703]
          Length = 366

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG SSE EVSL S K    A++   F V  + +D+     L              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGAWHLNDASNYLLNANNPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LIALNRSSRNIALVPGQSHNQLIETSNASALSQIDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + + R   +  H       +  P  IK
Sbjct: 126 PFVGSSVLGSAVSMDKDVTKRLLRDTGLMVAPFVTLTRANRERHHFADITARLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++ +      +  +   ++  ++L+E  + G E+ C V+G+   + + 
Sbjct: 186 PANQGSSVGVSKVRNEAQYQQAVELAF--SYDHKVLVESAIVGREIECAVLGNDHPEASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++       +PA +P   ++ ++ +A  A QA+ C+G++R D 
Sbjct: 244 CGEIVVHDEFYSYDTKYISEDGAAVAIPAPMPDSTHQRIREIAVQAFQALDCQGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   E+N  PG T +S++P++    G  +  L+  ++E A
Sbjct: 304 FLTPQED-VIVNEVNTLPGFTNISMYPKLWEATGIGYTALITRLIELA 350


>gi|94676718|ref|YP_588832.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
 gi|166198474|sp|Q1LT82|DDL_BAUCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94219868|gb|ABF14027.1| D-ala D-ala ligase [Baumannia cicadellinicola str. Hc (Homalodisca
           coagulata)]
          Length = 375

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K     +++  F+V    +D+     + +            
Sbjct: 6   VGIIFGGQSAEHEVSLQSAKNIVETIDENKFEVVLFGIDKEGQWHINNKLNYLIYGENET 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  YIALNKSNKHIAIIPGRKHDQFIQIDMLEQLVQLDVIFPIVHGTLGEDGNLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++    + V PSI        N         +     +K
Sbjct: 126 PFVGSTVLGSAVSMDKDIAKRLLRDADLEVTPSITLTRINRENFSYDQIITYLGSSLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +    S    L  +      D++L+E  ++G EL C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVINRISFDQALALAFC--FDDKVLVESAINGRELECAVLGNHDPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   LN      V+PA I  ++   +Q++A  A QA+ C G++R D 
Sbjct: 244 CGEIVLSDNFYSYEKKYLNEHGAVVVVPAAISKEVSNNIQKIAVRAFQALNCTGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + KV   E+N  PG T +S++P++   +G S+  L+  ++E A
Sbjct: 304 FLTT-NNKVLVNEVNTSPGFTSISMYPKLWQASGISYPALITRLIELA 350


>gi|262049252|ref|ZP_06022127.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
 gi|259162617|gb|EEW47184.1| D-alanylalanine synthetase [Staphylococcus aureus D30]
          Length = 356

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWGNMGLSYPELITKLIELA 341


>gi|260596746|ref|YP_003209317.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
 gi|260215923|emb|CBA28502.1| D-alanine--D-alanine ligase A [Cronobacter turicensis z3032]
          Length = 366

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKEKFDVVLLGIDKQGQWHVNDASRYLLNAEDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALHRSEKNVALIPGLSQQQLIESDNRQALPQLDVIFPIVHGTLGEDGSLQGMLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ V P I + R           +  +  P  +K
Sbjct: 126 PFVGSGVLGSAVSMDKDVAKRLLRDAGLAVAPFITLTRANRQRITFAEVKAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVNDEAQYHAAVALAF--EFDHKVVVETGIKGREIECAVLGNEEPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I  D+ ++++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVSSEFYSYDTKYIDDQAARVVVPADIAPDVNEKIRAIAVRAFQALECAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  +++L+  ++E A
Sbjct: 304 FLTP-DNEVIINEINTLPGFTNISMYPKLWQASGMGYQQLITRLIELA 350


>gi|325963740|ref|YP_004241646.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
 gi|323469827|gb|ADX73512.1| D-alanine--D-alanine ligase [Arthrobacter phenanthrenivorans Sphe3]
          Length = 382

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 90/359 (25%), Positives = 140/359 (38%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A+    ++V  I + +S   VL              
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYEVIPIGIAKSGQWVLVSADTAQWSLAATS 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVAPSAKSVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISP 126
            +  Y  +G+LASA+ MDK   K V             V                  +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLQVGPYVAVTDRQWRKDPESVRKQVDRLGF 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  ++    +   + ++    H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKVESMAELDAAIEEAR--RHDLKLVIEAGITGREIECAVLEGRG 256

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
            D    ++P     +         +             PA IP +    V+ LA  A  A
Sbjct: 257 TDAPRTSMPGEISVAGGTHEFYDFNAKYVEDGAAALSCPADIPEEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G  + +L+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTPA-GELIINEINTMPGFTPKSMYPQMWAASGLDYADLIDELIYLA 374


>gi|317049667|ref|YP_004117315.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
 gi|316951284|gb|ADU70759.1| D-alanine/D-alanine ligase [Pantoea sp. At-9b]
          Length = 364

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 143/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++ + F V  + +D+     L              
Sbjct: 6   VGIIFGGKSAEHEVSLQSAKNILEAIDTSKFDVVLLGIDKQGEWHLNDASGFLLNAENPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNRSGENVALVPGQASQQLITRQNAHPLSQVDVIFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++          + V  +             +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDFTKRLLRDAGLKVAPWISVTQAQRARLDAQAVVAQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +   +     L  +       ++LIEQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSCIEEFAAALDLAF--TFDRKVLIEQGIKGREIECAVLGNDEPVASP 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      V+PA I     + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYDTKYINESGAQVVVPAAISTADSEAIRAVALQAFQALECSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   AG S+  L+  ++E A
Sbjct: 304 FLTE-DGEIIVNEVNTLPGFTNISMYPKLWQAAGLSYSALITRLIELA 350


>gi|152987968|ref|YP_001346283.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
 gi|150963126|gb|ABR85151.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PA7]
          Length = 346

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 104/326 (31%), Positives = 161/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           +AVL GG S ER+VS++SG     AL  AG +V  +D                       
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHEVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 38  VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D     ++   K            D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQGLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  +  E QRLA   H+A+   G SR+DF  D    +++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAVAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|16330269|ref|NP_440997.1| D-alanyl-alanine synthetase A [Synechocystis sp. PCC 6803]
 gi|2829607|sp|P73632|DDL_SYNY3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1652758|dbj|BAA17677.1| D-alanine:D-alanine ligase-related protein [Synechocystis sp. PCC
           6803]
          Length = 354

 Score =  170 bits (429), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 148/342 (43%), Gaps = 46/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E EVS+ S +A A AL        ++VS   + ++   +           
Sbjct: 3   VGLLFGGCSGEHEVSIKSAQAIAKALASDDNQTKYQVSPFYIQKNGVWLGPDVSQQVLDQ 62

Query: 46  ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                 + ++ F +LHG  GEDG VQ +  L+++PY  SG+L S
Sbjct: 63  GVPWGDQPVTAGQRWQFPPEAARMEVWFPILHGPNGEDGTVQGLFSLMQVPYVGSGVLGS 122

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYVIKPLKG 135
            + MDK+  K V    G+P    + V R  + S   +              P  +KP   
Sbjct: 123 CVGMDKLAMKMVFERAGLPQVNYMGVERGEIWSNPCVFPALCEKIEAQVGYPCFVKPANL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIAV 194
           GSS+GI  ++    +   L  ++S++    +      +  +E       +    V     
Sbjct: 183 GSSVGIAKVRNRSELEAALDNAASYDRRIIVEAGLTDIREVECAVLGNENPQASVVGEIT 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SDFY YE KY+   S   +PA +P  +  ++Q +A  A +A+   G+ R DF + P +
Sbjct: 243 YDSDFYDYETKYTDGRSQMHIPANLPKAVVNQIQTMAIQAFKAVDAAGLGRLDFFYQPTT 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++   EIN  PG T  S++PE+   +G  F  L+  +++ A
Sbjct: 303 GQIVINEINTLPGFTAFSMYPELWRASGVEFPSLVDRLLQLA 344


>gi|256379981|ref|YP_003103641.1| D-alanyl-alanine synthetase A [Actinosynnema mirum DSM 43827]
 gi|255924284|gb|ACU39795.1| D-alanine/D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 355

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 98/346 (28%), Positives = 157/346 (45%), Gaps = 50/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP---- 51
           +AV+ GG SSE  VS  S  +  + L+   F+V  + + R    V     LA L+     
Sbjct: 8   VAVVFGGRSSEHTVSCVSAGSVLAHLDRERFEVVPVGITRQGAWVVGSGDLAALEIRDRQ 67

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG +GEDG VQ +LEL ++PY   G+
Sbjct: 68  MPTVDALVPVSGGELTTVSPDSALDGVDVVFPLLHGAWGEDGTVQGLLELADLPYVGPGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLG 140
           LASA +MDK  +K ++ + G+ V    ++ R         +  +  P  +KP + GSS+G
Sbjct: 128 LASAAAMDKEFTKTILRAAGLEVGSFAVLRRDQATLSEADRDRLGLPLFVKPARAGSSVG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---- 196
           I  +     +   +  +       +++IE  V G E+ CGV+      V      +    
Sbjct: 188 ITKVTDWADLDAAIAFARQT--DPKVIIEAAVTGREVECGVLELPDGRVEASLPAELRVV 245

Query: 197 ---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               D+Y ++ KY        +PAK+  D  + ++ LA  A +A+ C+G++R DF     
Sbjct: 246 GGGVDWYDFDAKYLDDVCEFDIPAKLADDTTERLRALAVEAFRALDCQGLARVDFFVTE- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              +   EIN  PG TP+S++P M    G S+R+LL  +VE A   
Sbjct: 305 DGGLVVNEINTMPGFTPISMYPRMWEVTGTSYRDLLTTLVETAIAR 350


>gi|295106875|emb|CBL04418.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 310

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 98/303 (32%), Positives = 153/303 (50%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S EREVSL S  A   ALE   ++V +ID         L     +  F  LH
Sbjct: 8   IALLCGGASGEREVSLLSAAAVEEALEK-RYEVIKIDTGVEGWAHTLLDSSVEGVFICLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GE+G +Q   E + +PYT  G+L+SA++MDK  +K +V S  +P    I        
Sbjct: 67  GGAGENGSIQGFCESVGLPYTGPGVLSSAIAMDKFVAKLLVESFRIPTPGYIRVLRGEEC 126

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              D +  +    V+KP   GS+LG+ ++     +   +  +        +L+EQ++ G 
Sbjct: 127 NIEDIRTKLGGKLVVKPSTEGSALGVSIVDNGDDLACAIDTALELAPS--VLVEQFISGR 184

Query: 176 ELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           ELT  V       +      +P ++FY YE KY    + H+ PA +     ++ + +A  
Sbjct: 185 ELTVAVLGGEKPRVLPPIEIIPANEFYDYEAKYEQDMAQHICPANLTEAELRQCEEMALG 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           AH A+GC G+SR+D + D    ++++LE N  PGMT  S+ P+ A   G +F EL   ++
Sbjct: 245 AHDALGCYGVSRTDCILDER-NRLWYLETNTIPGMTGTSLLPDAAKAVGITFDELCWNIM 303

Query: 294 EDA 296
           EDA
Sbjct: 304 EDA 306


>gi|169829946|ref|YP_001700104.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
 gi|168994434|gb|ACA41974.1| D-alanine--D-alanine ligase [Lysinibacillus sphaericus C3-41]
          Length = 308

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 95/299 (31%), Positives = 160/299 (53%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSMMTGKEMVAHLNKQKYDVVEILLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+     + + R  +  
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLIRGEVLP 129

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                LI  P V+KP  GGSS+G+ ++    ++   + +   W   ++++IEQY+ G E+
Sbjct: 130 LQDIELIGYPLVVKPNAGGSSVGVQIVHDRNALLAAVSEVFKW--DNEIIIEQYMIGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ D            + F+ Y+ K     ST   P ++PL I+  V + A  ++++
Sbjct: 188 TCPILNDKL-LPVLSIKHTAVFFDYQAK-YDDASTIEEPVELPLAIHDRVAKAAMTSYKS 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  +++ +
Sbjct: 246 LKCSVYARVDMLI--KEGVPYVLEVNTLPGMTQNSLLPKSALAAGISYSALLDSIIDSS 302


>gi|302875906|ref|YP_003844539.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
 gi|307689340|ref|ZP_07631786.1| D-alanyl-alanine synthetase A [Clostridium cellulovorans 743B]
 gi|302578763|gb|ADL52775.1| D-alanine/D-alanine ligase [Clostridium cellulovorans 743B]
          Length = 341

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 161/338 (47%), Gaps = 44/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG SSE ++SL+S     + ++   + V  I + +                    
Sbjct: 5   IAVIFGGQSSEYDISLASAAYVLNNIDKTKYGVYPIGISKEGLWYEYTGSIDKIEDGSWI 64

Query: 45  ------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       VL + + D+ F +LHG  GEDG +Q + +LL +P   + +L+SAL MD
Sbjct: 65  NDEYYKIPDGERVLFNKEVDVVFPLLHGFCGEDGTIQGLCKLLRLPCVGASVLSSALCMD 124

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIV 143
           K  SK ++    + V P  ++      +            +     +KP  GGSS+G+  
Sbjct: 125 KAYSKYILEDFNINVTPYEVIEEREYLNNKSSYKEKVIKKLGEEVFVKPSNGGSSVGVSK 184

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-----ASLDVTEIAVPKSD 198
           +K + S  + + ++    +  ++L+E+ +   E+   ++ D       +          +
Sbjct: 185 LKAEDSFEVAIEKAF--KYDKRVLVEKAIAAREIKVAIIEDGIELKTKIGEVVYKNSNKE 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY YE+KY+   +  ++PAK+  ++  +++ LA  A++ + CRG++R DF  D  + +++
Sbjct: 243 FYDYEVKYTEGMNELIVPAKLETEVMDKIEALALKAYKVLDCRGMARVDFFIDRYTSEIY 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S FP++   AG +  EL+  ++++A
Sbjct: 303 LNEINTIPGFTRFSSFPKLWEVAGVTPTELINILIKNA 340


>gi|323700785|ref|ZP_08112697.1| D-alanine/D-alanine ligase [Desulfovibrio sp. ND132]
 gi|323460717|gb|EGB16582.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans ND132]
          Length = 303

 Score =  169 bits (428), Expect = 4e-40,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 166/298 (55%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++ GG S ER+VSLS  +   SAL++ G  V+  D       +L+  K  D AF  LH
Sbjct: 3   VILIAGGWSDERDVSLSGARKIRSALDELGHDVTFFDPADDFRNLLSIAKGADFAFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTM 118
           G  GEDGL+QA+L+    PY  +G  AS L+++K  SK+V  + G+       +      
Sbjct: 63  GTPGEDGLIQAVLDKAGCPYQGAGPAASYLALNKAASKEVFEANGINTPEWQLITPTQGR 122

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +S P  +KP KGGSSLG+ ++K+ +  P  L +  +       L+E ++ G+ELT
Sbjct: 123 ETPLELSLPVFVKPDKGGSSLGMSLVKRAEDFPAALDKVFAMC--QSALVETFIPGVELT 180

Query: 179 CGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           CG++G+ +L +  I     SDF+ YE KY++  +  + PA +   + + +Q    +AH A
Sbjct: 181 CGILGNEALPLIMITPRVGSDFFDYENKYAADGAEEICPAPVDEGLVRTIQEQMLVAHAA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G SR DF+  P   + + LE+N  PGMTP S+ P  AA+ GYSF EL+  ++  
Sbjct: 241 LGLTGYSRGDFIATP-DGETYLLEVNTLPGMTPTSLLPRAAAHVGYSFTELIAELIRL 297


>gi|254967088|gb|ACT97586.1| D-alanyl-alanine synthetase A [mixed culture bacterium
           CY_gF1DD01_14]
 gi|281177552|dbj|BAI53882.1| D-alanine-D-alanine ligase [Escherichia coli SE15]
          Length = 364

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYTIAVDLAFEFDHKVIVEQGIKGREIECAVLGNNNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|269926708|ref|YP_003323331.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
 gi|269790368|gb|ACZ42509.1| D-alanine/D-alanine ligase [Thermobaculum terrenum ATCC BAA-798]
          Length = 362

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 98/340 (28%), Positives = 160/340 (47%), Gaps = 49/340 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG S+E +VS++S  +   AL+D+   +    + R     +                
Sbjct: 8   LLFGGRSAEHDVSVASAISMMKALKDSDIDILPCGITREGTWKVGEEAVKMLASSALFAG 67

Query: 52  ------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                   D+ F +LHG +GEDG VQ  LEL+ +PY  SG+L S
Sbjct: 68  DSDVRDIVPVDSQPRSVPEALSAVDVVFPLLHGPYGEDGTVQGFLELVNVPYVGSGVLGS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSS 138
           +LSMDK+  K++  S G+P+   + + R              +  +  P  +KP   GSS
Sbjct: 128 SLSMDKIAMKKMFESEGLPITRYLGILRSDWLSDPEGIISKIESELEYPVFVKPANLGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196
           +GI   K   S+   L  +S   +  +L++EQ V+  EL C V         V    +P 
Sbjct: 188 IGITKAKDRSSLLQALELAS--KYDRRLIVEQGVEARELECAVLGNDYPRASVVGEILPG 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +FY++E KY S +S  ++PA IP  +  E++  A  A +A+   G++R DF       K
Sbjct: 246 DEFYTFEAKYISESSKTIIPADIPPSVSDEIRDYAVRAFKAVDAAGLARVDFFLTSE-NK 304

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           V   EIN  PG TP+S++P++   +G S+ +L+  +++ A
Sbjct: 305 VLVNEINTIPGFTPISMYPKLWEASGLSYPDLVRKLLDLA 344


>gi|225575667|ref|ZP_03784277.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037124|gb|EEG47370.1| hypothetical protein RUMHYD_03760 [Blautia hydrogenotrophica DSM
           10507]
          Length = 344

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 91/339 (26%), Positives = 153/339 (45%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER+VS+ SG     AL   G +   +DV                      
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGVCKALRQKGHQAILVDVFAGLESVKLEAAFEGDYDVEAA 62

Query: 39  ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
               +S    +  L+                  D+ F  LHG  GE+G VQA  +L++I 
Sbjct: 63  AEYIKSFNERIQELEKQRRDFFGPNVVALCKAADIVFLALHGENGENGKVQAAFDLMKIK 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKG 135
           YT +G   SA++MDK  +K +     VP    + +      +    H +  P V+K   G
Sbjct: 123 YTGTGHTGSAMAMDKGITKALFQMYQVPTPKGVTMTVKNRRNDLSVHGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++  ++    L ++ S+    +++IE+Y+ G E T  V+   +     +  P
Sbjct: 183 GSSIGVYIVQDQEAYVKALDEAFSYEE--EVVIEEYIQGKEYTVAVVDGEAY-PIVLIEP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            S FY Y+ KY +  +    PA +  +  +++Q  A   ++A+  +   R DF+ D    
Sbjct: 240 VSGFYDYKNKYQAGATIETCPAPLDEEKTRKMQEYAVRGYKALALQAYGRLDFMMDEAGN 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ AA  G  +  L   ++E
Sbjct: 300 -MYCLEANTLPGMTPTSLIPQEAAALGMDYPTLCEHLIE 337


>gi|15599396|ref|NP_252890.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
 gi|39931187|sp|Q9HWI0|DDLA_PSEAE RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|9950412|gb|AAG07588.1|AE004836_7 D-alanine-D-alanine ligase A [Pseudomonas aeruginosa PAO1]
          Length = 346

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 162/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           +AVL GG S ER+VS++SG     AL  AG +V  +D                       
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 38  VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D     ++   K            D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D    +++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|119717515|ref|YP_924480.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538176|gb|ABL82793.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 373

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 143/357 (40%), Gaps = 62/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  +  +  +A++ A + V  I +      VL    P         
Sbjct: 10  VAVVFGGKSSEHAISCVTAGSVLAAIDRAAYDVVPIGIATDGRWVLESGDPERLRIEGPD 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG +GEDG +Q +LE
Sbjct: 70  RLPHVDGERAAIALAPDTASTSLVVTEPAQPPRALGEVDVVFPLLHGPWGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDSQHLIS 125
           +  + Y  +G+LASA+SMDK   K         V+ S  V                  I 
Sbjct: 130 MAGVRYVGAGVLASAVSMDKAYMKVVLAAAGLPVLPSVTVTTREWARDAAGCRARADEIG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-----DQLLIEQYVDGIELTCG 180
            P  +KP +GGSSLGI  +     +   +  +   +         +   +   G+     
Sbjct: 190 YPLFVKPARGGSSLGISKVHDATELDGAIELAFEHDPKVLVETAAIDAREVECGVLQAVD 249

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
              + S+          +FY +  KY     T   +PA +P  + ++V+ L+  A +A+G
Sbjct: 250 GTPETSVPAEIRISGAHEFYDFAAKYLPEEHTELDVPADLPEALVRQVRELSVRAFEAVG 309

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R DF   P   ++   EIN  PG TP S+FP M A +G  +  L+  +++ A
Sbjct: 310 CEGLARVDFFVLP-GERLVVNEINTMPGFTPTSMFPRMWAASGLDYPALVDRLIQLA 365


>gi|26246382|ref|NP_752421.1| D-alanyl-alanine synthetase A [Escherichia coli CFT073]
 gi|91209444|ref|YP_539430.1| D-alanyl-alanine synthetase A [Escherichia coli UTI89]
 gi|110640642|ref|YP_668370.1| D-alanyl-alanine synthetase A [Escherichia coli 536]
 gi|117622644|ref|YP_851557.1| D-alanyl-alanine synthetase A [Escherichia coli APEC O1]
 gi|191173486|ref|ZP_03035013.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218557291|ref|YP_002390204.1| D-alanyl-alanine synthetase A [Escherichia coli S88]
 gi|227884616|ref|ZP_04002421.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|237707631|ref|ZP_04538112.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|300988123|ref|ZP_07178560.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|300997436|ref|ZP_07181776.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|301049572|ref|ZP_07196526.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|306813154|ref|ZP_07447347.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|331645551|ref|ZP_08346655.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331656432|ref|ZP_08357394.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
 gi|29336710|sp|Q8FKE3|DDLA_ECOL6 RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|26106780|gb|AAN78965.1|AE016756_148 D-alanine--D-alanine ligase A [Escherichia coli CFT073]
 gi|91071018|gb|ABE05899.1| D-alanine--D-alanine ligase A [Escherichia coli UTI89]
 gi|110342234|gb|ABG68471.1| D-alanine-D-alanine ligase A [Escherichia coli 536]
 gi|115511768|gb|ABI99842.1| D-alanine-D-alanine ligase A [Escherichia coli APEC O1]
 gi|190906195|gb|EDV65807.1| D-alanine--D-alanine ligase A [Escherichia coli F11]
 gi|218364060|emb|CAR01725.1| D-alanine-D-alanine ligase A [Escherichia coli S88]
 gi|222032177|emb|CAP74916.1| D-alanine--D-alanine ligase A [Escherichia coli LF82]
 gi|226898841|gb|EEH85100.1| D-alanyl-alanine synthetase A [Escherichia sp. 3_2_53FAA]
 gi|227838702|gb|EEJ49168.1| D-alanyl-alanine synthetase A [Escherichia coli 83972]
 gi|294492292|gb|ADE91048.1| D-alanine--D-alanine ligase A [Escherichia coli IHE3034]
 gi|300298663|gb|EFJ55048.1| D-ala D-ala ligase [Escherichia coli MS 185-1]
 gi|300304255|gb|EFJ58775.1| D-ala D-ala ligase [Escherichia coli MS 200-1]
 gi|300407537|gb|EFJ91075.1| D-ala D-ala ligase [Escherichia coli MS 45-1]
 gi|305853917|gb|EFM54356.1| D-alanyl-alanine synthetase A [Escherichia coli NC101]
 gi|307552286|gb|ADN45061.1| D-alanine--D-alanine ligase A [Escherichia coli ABU 83972]
 gi|307628153|gb|ADN72457.1| D-alanyl-alanine synthetase A [Escherichia coli UM146]
 gi|312944958|gb|ADR25785.1| D-alanyl-alanine synthetase A [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315289818|gb|EFU49208.1| D-ala D-ala ligase [Escherichia coli MS 110-3]
 gi|315294151|gb|EFU53502.1| D-ala D-ala ligase [Escherichia coli MS 153-1]
 gi|315299609|gb|EFU58857.1| D-ala D-ala ligase [Escherichia coli MS 16-3]
 gi|320197185|gb|EFW71802.1| D-alanine--D-alanine ligase [Escherichia coli WV_060327]
 gi|323191488|gb|EFZ76750.1| D-alanine--D-alanine ligase [Escherichia coli RN587/1]
 gi|323953007|gb|EGB48875.1| D-alanine-D-alanine ligase [Escherichia coli H252]
 gi|323958573|gb|EGB54276.1| D-alanine-D-alanine ligase [Escherichia coli H263]
 gi|324010139|gb|EGB79358.1| D-ala D-ala ligase [Escherichia coli MS 57-2]
 gi|324010730|gb|EGB79949.1| D-ala D-ala ligase [Escherichia coli MS 60-1]
 gi|330910172|gb|EGH38682.1| D-alanine--D-alanine ligase [Escherichia coli AA86]
 gi|331045713|gb|EGI17839.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli M605]
 gi|331054680|gb|EGI26689.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetaseA)
           (D-Ala-D-Ala ligase A) [Escherichia coli TA206]
          Length = 364

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYTIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|296270752|ref|YP_003653384.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296093539|gb|ADG89491.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 386

 Score =  169 bits (427), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 61/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG +SE  VSL    +   A++ + ++V  I + +    VLA  +          
Sbjct: 28  VAVVFGGRNSEHSVSLLGAGSVLEAIDQSKYEVIPIGIAQDGRWVLASERQRYAIESGRL 87

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F +LHG FGEDG +Q +LE+  +
Sbjct: 88  PTVDETGDALAIPTHSASLVALRPGEIPRALGEVDVVFPLLHGPFGEDGTIQGLLEMAGV 147

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYV 129
            Y  SG+LASA+ MDK   K V+ + G+PV P ++V                  +  P  
Sbjct: 148 RYVGSGVLASAIGMDKAYMKLVLRASGLPVGPYVVVRDRDWRVDRARVLKEAGDLGWPVF 207

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVM 182
           +KP + GSS GI  +     +   +  +    H  ++L+E  + G E+ C          
Sbjct: 208 VKPARAGSSQGITKVHDAAGLEEAIEAAR--EHDPKVLVEAAIPGREVECAVLESLGDSP 265

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +AS+    +     +FY +E KY         PA +P  + + V+ LA  A +A+GC G
Sbjct: 266 PEASVVGEVVVAEGHEFYDFEAKYFDGGMELHAPADLPESVSERVRALAVQAFEALGCEG 325

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF + P S ++   EIN  PG T  S+ P++ A  G  + +L+  +++ A
Sbjct: 326 LARVDFFYTP-SGELIVNEINTMPGFTAQSVAPKLWAATGLPYPQLIDRLIQLA 378


>gi|107103718|ref|ZP_01367636.1| hypothetical protein PaerPA_01004789 [Pseudomonas aeruginosa PACS2]
 gi|116052238|ref|YP_788918.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218889470|ref|YP_002438334.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|254242882|ref|ZP_04936204.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|296387248|ref|ZP_06876747.1| D-alanyl-alanine synthetase A [Pseudomonas aeruginosa PAb1]
 gi|313109649|ref|ZP_07795593.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
 gi|115587459|gb|ABJ13474.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126196260|gb|EAZ60323.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 2192]
 gi|218769693|emb|CAW25453.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa LESB58]
 gi|310882095|gb|EFQ40689.1| D-alanine-D-alanine ligase A [Pseudomonas aeruginosa 39016]
          Length = 346

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           +AVL GG S ER+VS++SG     AL  AG +V  +D                       
Sbjct: 8   VAVLFGGSSEERDVSIASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 38  VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D     ++   K            D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++        +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEAVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D    +++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|302339386|ref|YP_003804592.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
 gi|301636571|gb|ADK81998.1| D-alanine/D-alanine ligase [Spirochaeta smaragdinae DSM 11293]
          Length = 363

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 152/343 (44%), Gaps = 47/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E EVSL S  +    ++   F V+ I VD+     L              
Sbjct: 6   VALLFGGKSGEHEVSLVSAASVFKHIDKERFDVALIAVDKDGAWFLQPQPLYDEKEGGFV 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L  +L F VLHG FGEDG VQ +LEL ++PY  +G+L
Sbjct: 66  VERKEENRVYAVPAGGLRTMAKPLDIELVFPVLHGTFGEDGTVQGLLELCDLPYAGAGVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLK 134
            S+L MDK   K++    G+PV P   +   +                  S P  +KP +
Sbjct: 126 GSSLCMDKAAVKRIWIQAGLPVVPFEELREVSWKRSKGAAASVRRAVDRFSFPLFVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+   + ++ +   +  + S++    +        IE +     + +       V
Sbjct: 186 AGSSVGVSRCETEEGLYAAIEDAFSFDDKLLIEPAVQAKEIECSVIGNQELTTFAPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P  DFY Y+ KY   +  ++ +P+ +  +  K V++++  A++     G +R D  ++  
Sbjct: 246 PSHDFYDYDAKYIDPDGANLLIPSSLNEEQQKMVRQISARAYRVAEAEGFARVDCFYEEA 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV   EIN  PG T +S+FP++    G ++ ELL  +++ A
Sbjct: 306 TGKVLLNEINTIPGFTKISMFPKLCENGGVAYGELLTKLLDLA 348


>gi|255283497|ref|ZP_05348052.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
 gi|255265954|gb|EET59159.1| D-alanine--D-alanine ligase [Bryantella formatexigens DSM 14469]
          Length = 341

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 99/339 (29%), Positives = 156/339 (46%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER+VS+ SG     AL   G     +DV                      
Sbjct: 3   IVVLAGGTSTERDVSIVSGTKVCEALRSRGHLAILLDVFCGKEGLQAETAFAEEYDVERE 62

Query: 39  ---DRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
               RS    +  +K                  D  F  LHG  GEDG +QA  +LL I 
Sbjct: 63  AAYIRSFNDSIEKIKAERREFFGPGVLETCRAADTVFLALHGTCGEDGRIQAAFDLLGIT 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKG 135
           YT SG L SAL+MDK  +KQ+    GVP    ++V +        +  +  P V+K   G
Sbjct: 123 YTGSGYLGSALAMDKTITKQLFRENGVPAPAGVIVRKTDSPKSAAELGMELPCVVKTACG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++  ++     +      ++ D+L++EQY+ G E T GV+   +        P
Sbjct: 183 GSSVGVYIVHTEEEFSEAVKNGF--SYEDKLIVEQYIRGQEYTVGVIDGKAY-PIVEISP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            + FY Y+ KY + ++    PA +  ++ +++Q +A  A+  +     +R DF+ D    
Sbjct: 240 IAGFYDYKNKYQAGSTIETCPAPLSAELTQKMQEIALKAYDTLRLESYARMDFMMDE-DG 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            ++ LE N  PGMTP S+ P+ AA  G +F +L   ++E
Sbjct: 299 GIYCLEANTLPGMTPTSLLPQEAAAVGMNFADLCEKLIE 337


>gi|325498332|gb|EGC96191.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ECD227]
          Length = 370

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 71

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +    +  ++++E+ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 310 FLTLEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 356


>gi|218549957|ref|YP_002383748.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
 gi|218357498|emb|CAQ90137.1| D-alanine-D-alanine ligase A [Escherichia fergusonii ATCC 35469]
          Length = 364

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 153/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDAANYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALRPSATSLAQVPGKHEQQLIDAQTAQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P + + R         + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFVTLTRANRSTITFAEIEAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +    +  ++++E+ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVTNEAEYKKAVDLAF--EYDHKVVVEKGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA IP +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDDGAKVVVPAAIPAEINDKIREIAVKAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTLEND-VVINEINTLPGFTNISMYPKLWQASGLSYTDLITRLIELA 350


>gi|254967096|gb|ACT97590.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 310

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 99/308 (32%), Positives = 162/308 (52%), Gaps = 12/308 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           + VLMGG S E EVS  +G A A AL   G+K   ++++ R+V   +  L  ++ FN +H
Sbjct: 6   IIVLMGGPSEEAEVSRRTGAAIAEALVSKGYKAQTLELNPRTVLKDIDSLGGEVVFNAIH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--- 116
           G +GEDG +Q +LE+ EIPYT SGI+A A+ M+K  SK V     +P   S   N     
Sbjct: 66  GRYGEDGALQGLLEMAEIPYTGSGIMAHAVGMNKKVSKDVFKGANIPTARSESYNGNLES 125

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +   + P V+K    GSS+G+ +++++  +   + ++    +   L++EQ++
Sbjct: 126 AEAIIDHIRKEFTIPVVVKSATQGSSIGVTIVREESQLEAAVTEAL--KYDPILVVEQFL 183

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG E T  V+   +L V     P S  Y Y+ KY+   + +++PA I  ++  E+QR+  
Sbjct: 184 DGREFTVAVLDGKALSVI-EIRPHSGEYDYKSKYTVGATEYLVPAPISDEMTAEMQRIGE 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           L ++ +   G+ R D + D    K++ LE N  PGMT  S+ P+ A   G  F  L   +
Sbjct: 243 LVYREVQGSGVIRVDIMTDHAD-KMYVLEYNTVPGMTVTSLVPKAANEMGIDFPTLCEKI 301

Query: 293 VEDASCLR 300
           +  AS  +
Sbjct: 302 LLTASIGK 309


>gi|253316242|ref|ZP_04839455.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           str. CF-Marseille]
          Length = 356

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 85/339 (25%), Positives = 150/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A++   + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIDKDKYHVDIIYITNDGDWRKQNNITAEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         +  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYNAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEAELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|194334287|ref|YP_002016147.1| D-alanyl-alanine synthetase A [Prosthecochloris aestuarii DSM 271]
 gi|229485974|sp|B4S8W3|DDL_PROA2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194312105|gb|ACF46500.1| D-alanine/D-alanine ligase [Prosthecochloris aestuarii DSM 271]
          Length = 360

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 86/351 (24%), Positives = 163/351 (46%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S+E E+S+ S +A A+ ++   +++  I V                      
Sbjct: 6   VALIFGGQSTEHEISIISARAIANHIDTEAYELYPIYVGHDGAWFKGETAQKVLDLDMPA 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                         +    D+A  ++HG+ GEDG +Q +L++  
Sbjct: 66  MLANTSADTIRERLREISFSDPRNRFLFDFSEEGIDVALPIIHGSTGEDGKIQGLLDMFS 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPP 127
           +PYT  G+ ASA++MDK  +K      G+ + P   + +                  + P
Sbjct: 126 VPYTGCGVHASAMTMDKETTKICAEHAGLHIAPYTTIRKLRYQQDPQQVVSVILEEFTLP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           + +KP   GSS+GI  + + + +   L ++       ++LIE+ ++G E+   V+G+ S 
Sbjct: 186 FFVKPASQGSSIGITKVHRPEELAAALEKAFMV--DTKVLIEKTIEGREIEVAVLGNDSP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +      P  DFY +  KY +  ++  +PA++P ++ ++V   A  A++A+ CRG+SR
Sbjct: 244 VASVPGEVEPGGDFYDFTDKYINGKASLHIPARLPEEVLQKVSTEALKAYRALECRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  + K+   EIN  PG T +S++P M   +G  F +L+  +++ A
Sbjct: 304 VDFFIEHATGKIILNEINTVPGFTGISMYPMMMDASGIDFSQLIDRLLQLA 354


>gi|29829221|ref|NP_823855.1| D-alanyl-alanine synthetase A [Streptomyces avermitilis MA-4680]
 gi|39930866|sp|Q82JS5|DDL_STRAW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29606327|dbj|BAC70390.1| putative D-alanine-D-alanine ligase [Streptomyces avermitilis
           MA-4680]
          Length = 385

 Score =  169 bits (427), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 154/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITRDGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESNEGGVILPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWERDESAARRKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +     +   + ++    H  ++++E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAVAEAQ--RHDPKIIVEALLRGREIE 256

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P +  ++Y         ++  ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPAQSHAYYDFEAKYIDSTPGIVPAPLTPEETAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P+M   +G ++ EL+  +VE
Sbjct: 317 FEATSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQASGIAYPELVDRLVE 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|33240829|ref|NP_875771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
 gi|39930844|sp|Q7VAS4|DDL_PROMA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33238358|gb|AAQ00424.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 351

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 96/346 (27%), Positives = 151/346 (43%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAH-------- 48
           + ++ GG+S E EVS+ S +    AL+       F V  I +D+      +         
Sbjct: 8   VGIVFGGVSGEHEVSIKSARTIIHALKHPININKFDVISIYIDKKGKWWPSEIAEKVLES 67

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K  + F VLHG  GEDG +Q   +L   PY  SG
Sbjct: 68  DPNFDKNIFFKQVEFIGLDHLPKETEKIQIWFPVLHGPNGEDGSIQGFFQLTGKPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKP 132
           +L SAL MDK+  K   S+ G+P      ++                 +  +  P  IKP
Sbjct: 128 VLGSALGMDKIAMKAAFSAAGLPQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE- 191
              GSS+GI      + +   L  ++      ++++E+ +   EL C V+G   +  +  
Sbjct: 188 ANLGSSVGISKAYDKKELLNGLDLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCV 245

Query: 192 -IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 SD+Y Y+ KYS  ++  ++PA IP  I KEVQ L+ LA +AI   GI+R DF +
Sbjct: 246 GEVRYSSDWYDYDSKYSKNSTKTLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D     ++  EIN  PG T  S++P +   +G    +L+  ++E A
Sbjct: 306 DEEKDSLWINEINTMPGFTEQSMYPMLWDASGIDISQLVARLIESA 351


>gi|285019572|ref|YP_003377283.1| D-alanine-D-alanine ligase [Xanthomonas albilineans GPE PC73]
 gi|283474790|emb|CBA17289.1| probable d-alanine-d-alanine ligase protein [Xanthomonas
           albilineans]
          Length = 319

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 97/297 (32%), Positives = 159/297 (53%), Gaps = 7/297 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSER+VSL+SG     AL   G     +D   ++   +     D  FN+LHG
Sbjct: 20  VAVLLGGSSSERDVSLTSGANVLDALRSRGVDAQPVDGIAALLERIRAGAVDRVFNILHG 79

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
             GE+G++Q +L  L++P+T + +L SAL++DK+R+KQV  + G+P      I  +    
Sbjct: 80  GDGENGVLQGLLRALQVPFTGADVLGSALTLDKIRTKQVWIAAGLPTPGFARIAADADLA 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P  +KP   GSS+G+  +     +    +++ + ++  +LL+EQ V G E T
Sbjct: 140 AAAAELGYPLFVKPSCEGSSVGVFRVLSAVDL--APVRAFAADYAGELLMEQMVQGEEYT 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            G++GD +L      VP  D+Y Y  KY + ++ ++ P     D   ++++LA  A  A 
Sbjct: 198 VGILGDIALPSI-RIVPVGDWYDYHAKYIAEDTQYLCPGLSGEDE-VQIRQLALQAFAAA 255

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           GC G  R D + D +   +  +EIN  PGMT  S+ P+ AA+ G     L   ++E 
Sbjct: 256 GCSGWGRVDVMRDRVRG-LQLIEINTAPGMTSHSLVPKAAAHLGIDLASLCWRILEQ 311


>gi|303258234|ref|ZP_07344241.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
 gi|302858987|gb|EFL82071.1| D-alanine--D-alanine ligase B [Burkholderiales bacterium 1_1_47]
          Length = 313

 Score =  168 bits (426), Expect = 6e-40,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 150/302 (49%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA    D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV   +++   T   
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129

Query: 121 QHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +         VIKP K GSSLG+  +K      +    + S   G  +L E+YV G ELT
Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATVDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189

Query: 179 C---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +                  Y +E KY S  + +V PA++P ++ ++++ +   A 
Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGDYDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKAA 249

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+G    SR D +          LEIN  PGMTP S+ P  A   G S+ EL+  +   
Sbjct: 250 LAVGADAWSRIDVIL-RDDGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAAR 308

Query: 296 AS 297
           AS
Sbjct: 309 AS 310


>gi|126650619|ref|ZP_01722842.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126592775|gb|EAZ86774.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 308

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 93/299 (31%), Positives = 158/299 (52%), Gaps = 9/299 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG SSE++VS+ +GK   + L    + V +I ++    ++      D+A   LHG
Sbjct: 10  VGVIMGGTSSEKQVSIMTGKEMVAHLNKQKYDVVEIVLEDHQEVIEKVQGIDVALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
            FGEDG +Q +LE L IPYT SG+LAS+L MDK  +K+++   G+     + + +     
Sbjct: 70  KFGEDGTIQGVLETLGIPYTGSGLLASSLCMDKNMAKKILRYEGIATPDWMHLVKGEELP 129

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                L+  P V+KP  GGSS+G+ ++    ++   + +   W   ++++IEQY+ G E+
Sbjct: 130 LQDIELMGYPLVVKPNAGGSSVGVQIVHDRNALLTAVAEVLKW--DNEIIIEQYMIGDEI 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC ++ D            + F+ Y+ K     ST   P ++PL I+  V + A  ++ +
Sbjct: 188 TCPILNDRL-LPVLSIKHTAVFFDYQAK-YDDASTIEEPVELPLAIHDRVAKAAMTSYTS 245

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   +R D L        + LE+N  PGMT  S+ P+ A  AG S+  LL  +++ +
Sbjct: 246 LKCSVYARVDMLI--KEGVPYVLEVNTLPGMTQNSLLPKSAFAAGISYSALLDSIIDSS 302


>gi|239906669|ref|YP_002953410.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
 gi|259645166|sp|C4XRH9|DDL_DESMR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|239796535|dbj|BAH75524.1| D-alanine--D-alanine ligase [Desulfovibrio magneticus RS-1]
          Length = 304

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 152/295 (51%), Gaps = 6/295 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSER VSLS       AL   G +V   D+       +   K  D  F  LHG 
Sbjct: 5   LVAGGWSSERAVSLSGAVQIEKALTSLGHEVVPYDLSHDFPGFVRRAKACDFVFLSLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDGL QA+L+   +PY  SG   S L+++K  SKQ+     +P      V R    S 
Sbjct: 65  PGEDGLPQALLDAAGVPYQGSGPAGSFLALNKAASKQLFLEACLPTPRWTFVPRDAGTSA 124

Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P+ +KP  GGSS+ + ++++ + +P  L +     HGD  LIE+ + G ELTC 
Sbjct: 125 RPDFPLPWFVKPNLGGSSIHMTLVRRAEELPAALEKVF--AHGDDALIEEGLSGPELTCA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I     +F+ Y  KY    +  + PA +   + +E+ RL+  AH+ +G 
Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYEPDAADEICPAPVEPAVTEELSRLSLAAHRVLGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            G SR+DF+  P    +  LE+N  PGMTP S+ P  AA AG SF +L+  ++E 
Sbjct: 243 CGYSRADFILAPEG--LRLLEVNTLPGMTPTSLLPRAAATAGLSFADLIARLIEL 295


>gi|157147020|ref|YP_001454339.1| D-alanyl-alanine synthetase A [Citrobacter koseri ATCC BAA-895]
 gi|157084225|gb|ABV13903.1| hypothetical protein CKO_02797 [Citrobacter koseri ATCC BAA-895]
          Length = 371

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 81/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ A F V  + +D+            +L    P 
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKARFDVVLLGIDKQGQWHVSDAENYLLNANDPA 71

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSSTSLAQVPGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   D          +  P  +K
Sbjct: 132 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRDAIRFAEVASRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 192 PANQGSSVGVSKVTSEAQYEQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDHPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++++A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSDFYAYDTKYIDGNGAQVVVPAQIPQEVNDKIRQIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTAE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 356


>gi|117924060|ref|YP_864677.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
 gi|166198490|sp|A0L5M8|DDL_MAGSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117607816|gb|ABK43271.1| D-alanine--D-alanine ligase [Magnetococcus sp. MC-1]
          Length = 310

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 102/304 (33%), Positives = 156/304 (51%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S EREVSL SG+A   AL+  G++V  IDVDR +  VL     ++A   LHG
Sbjct: 8   IGVLYGGLSEEREVSLRSGQALFVALQSLGYQVVAIDVDRHITKVLEREGIEVAVLALHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG +Q +LE + IPYT   + ASA+ MDK  SK++  S G+P    I +       
Sbjct: 68  PMGEDGTIQGLLEFMGIPYTGPNVAASAICMDKGLSKRLFHSEGLPTPAWIELAGDHEEA 127

Query: 118 ----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                           +KPL  GSS+GI        +   + ++ S +H  + ++E+ ++
Sbjct: 128 DELVDHFLGDFHGAAFVKPLDSGSSVGISRAVGKDELIRGVAKALSVSH--RCMVERAIE 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G ELT  ++   +  +    VP   FY Y+ KY++  + +++PA    D   E      L
Sbjct: 186 GRELTLSILDGEAFPLI-EIVPIDGFYDYDHKYTAGRTNYLVPAPNLDDKSLEAVVKIGL 244

Query: 234 AHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A   I GCRG+ R+DF+ D      + LE+N  PGMT +S+ P+ A   G    +L   +
Sbjct: 245 AAYHITGCRGLVRADFILDGE-GTPWLLELNTIPGMTELSLAPKAAHAVGIEMPQLAERI 303

Query: 293 VEDA 296
           ++ A
Sbjct: 304 LQGA 307


>gi|303328301|ref|ZP_07358739.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
 gi|302861631|gb|EFL84567.1| D-alanine--D-alanine ligase B [Desulfovibrio sp. 3_1_syn3]
          Length = 303

 Score =  168 bits (426), Expect = 7e-40,   Method: Composition-based stats.
 Identities = 103/300 (34%), Positives = 154/300 (51%), Gaps = 5/300 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSEREVSL+  +  A AL   G  V+  D+      +L   +  D A   LHG 
Sbjct: 5   LIAGGWSSEREVSLNGARGMAEALRALGHSVTFFDLLTEFDQLLPQAREHDFALINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P             D 
Sbjct: 65  PGEDGLVQAMLDRVGCPYQGAGPAGSFLALNKAAAKQLFRHAGLPTADWEFLPCPPPADW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  +K   GGSSL +   +    + + L +      GD+ LIE  + G E+TCG
Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARDRAELDMVLAEIF--AAGDEALIEPELKGREVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ +L    I     DF+ YE KY++  +  + PA I  ++   V+ LA  AH+A+G 
Sbjct: 183 ILGEEALPPILIEPVAGDFFDYESKYATGGAREICPAPIAPELTDRVRELALAAHRALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           RG SR+DF+ D   + +  LE+N  PGMT  S+ P+ A   G  F  LL  ++E     R
Sbjct: 243 RGYSRADFILDA-DQNLTLLEVNTLPGMTSTSLVPQEAKVIGLDFGRLLERLMELGMARR 301


>gi|14719503|pdb|1E4E|A Chain A, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  168 bits (426), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 138/338 (40%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++  V          Y     
Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q      ++ +GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG S  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLA 340


>gi|293366048|ref|ZP_06612736.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
 gi|291319771|gb|EFE60129.1| D-alanine-D-alanine ligase [Staphylococcus epidermidis
           M23864:W2(grey)]
          Length = 362

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGITEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|108805737|ref|YP_645674.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766980|gb|ABG05862.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 351

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 161/340 (47%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S E EVSL+S ++    L  AG +V  + + R    +               
Sbjct: 4   VMVVFGGRSGEHEVSLASARSVMEGLRKAGHEVVPVGITREGRWLAGEDPLRELEAAAGG 63

Query: 46  ----------LAHLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                     LA  +P       D+ F VLHG +GEDG +Q +LEL +IPY  +G+LASA
Sbjct: 64  NAGSPSGPPALAAHRPPAELESVDVVFPVLHGPYGEDGTIQGLLELADIPYVGAGVLASA 123

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSL 139
           + MDK+  K+V +  G+P    + + R     +              P  +KP   GSS+
Sbjct: 124 VGMDKITMKKVFAHHGLPQVRWVELTRRRWQERRKELLREVEEELGFPCFVKPSNLGSSV 183

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA---VPK 196
           GI    +   +   L  +++ +   ++++E  VD  E+   V+G+ + +V+      + K
Sbjct: 184 GISRAAEPGELAAALDAAAALD--RRIIVEAGVDAREVEVSVLGNEAPEVSVPGEILIRK 241

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY YE KYS        PA +P +   E++R+A  A +AI   G++R DF  +  + +
Sbjct: 242 GDFYDYEAKYSEGGMELEAPADLPQETAGEIRRIARTAFEAIDAAGMARVDFFLERRTGR 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           V   EIN  PG T  S++  +   +G  +  LL  ++E A
Sbjct: 302 VLLNEINTIPGFTATSVYSRLWEASGLPYERLLERLIELA 341


>gi|27468599|ref|NP_765236.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis ATCC
           12228]
 gi|38257332|sp|Q8CRP5|DDL_STAES RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27316146|gb|AAO05280.1|AE016749_226 D-alanine-D-alanine ligase [Staphylococcus epidermidis ATCC 12228]
 gi|329726112|gb|EGG62584.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU144]
 gi|329734127|gb|EGG70445.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU045]
          Length = 357

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGITEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|167614192|gb|ABZ89697.1| D-alanine--D-alanine ligase [Buchnera aphidicola]
          Length = 310

 Score =  168 bits (425), Expect = 8e-40,   Method: Composition-based stats.
 Identities = 100/303 (33%), Positives = 165/303 (54%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER++S+SSG A   +L  +G K    D      + L   K D A+  LHG
Sbjct: 5   VAVLLGGNSTERKISISSGHAVLKSLMRSGIKAYPFDTRDFPIMQLKKQKFDTAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE L+IPYT SGI+AS++S+DK R+K +  S G+PV P + + +  +  
Sbjct: 65  KGGEDGSIQGVLEYLKIPYTGSGIMASSISLDKKRTKLLWKSAGLPVLPDVYIQKKDILK 124

Query: 121 Q---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP   GSS+GI ++     +   +    ++N+ + +L+EQ+
Sbjct: 125 NLSSLLKKRFFKLDFPLLVKPNNQGSSIGITLVYLKNQLKNAI--EVAFNYSNTILVEQF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++ +  L   +I    +  Y +  KY   ++ ++ P+ + L   K+++++A
Sbjct: 183 IKGTEYTVSILDEKILPSIQIITKNNF-YDFASKYQLSSTQYLCPSGLNLKQEKKLKKIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A   +GC G  R D + D  + K + LEIN  PGMT  S+ P  A   G SF EL+L 
Sbjct: 242 KKAWDTLGCNGCGRIDVILD-SNNKFWLLEINTIPGMTNRSLLPISANAIGMSFDELVLN 300

Query: 292 MVE 294
           ++ 
Sbjct: 301 ILN 303


>gi|261404734|ref|YP_003240975.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
 gi|261281197|gb|ACX63168.1| D-alanine/D-alanine ligase [Paenibacillus sp. Y412MC10]
          Length = 364

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +              
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEIVPFYISKQGTWRIGSKMSAPFARQEEL 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                  +   D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR            + +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERSQHEVLKNIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193
           GSS+GI   K  + +   +  +      D++++E++VD  E+   V+G+     +     
Sbjct: 188 GSSVGISKAKNREQLKAAIESAL--RFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +   E+N  PG TP S++P +    G S+RELL  M+E 
Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347


>gi|70732508|ref|YP_262271.1| D-alanyl-alanine synthetase A [Pseudomonas fluorescens Pf-5]
 gi|68346807|gb|AAY94413.1| D-alanine--D-alanine ligase [Pseudomonas fluorescens Pf-5]
          Length = 364

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S +    AL+   F+   I +D+            ++    P 
Sbjct: 6   VGIIFGGRSAEHEVSLQSARNIVDALDRTRFEPVLIGIDKQGHWHLNDTSNFLINQENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L + ++
Sbjct: 66  LIALNQSNRELAVVPGKASQQLVETSSQELLGHVDVIFPIVHGTLGEDGCLQGLLRMADL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA+ MDK  SK+++   G+ V P I              ++  +  P  +K
Sbjct: 126 PFVGSDVLGSAVCMDKDISKRLLRDAGLAVTPFITLTRATRARYGFARARETLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVDNEAEYEAAVELAL--GFDHKVLVESAVRGREIECAVLGNDQPIASG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++        PA I ++  + ++ LA  A Q +GC G++R D 
Sbjct: 244 CGEIVVSNGFYSYDSKYIDGEAAQVLVPADISIEHSERIRALAVEAFQVLGCSGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++    G S+ EL+  ++E A
Sbjct: 304 FLTDE-GEVLINEINSLPGFTRISMYPKLWQATGMSYSELVSRLIELA 350


>gi|326792886|ref|YP_004310707.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326543650|gb|ADZ85509.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  168 bits (425), Expect = 9e-40,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 157/346 (45%), Gaps = 54/346 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG SSE EVSL S     + ++ + ++V  + + +    +L                
Sbjct: 7   LLFGGCSSEHEVSLKSATTILNNIDRSIYEVHPVGITKEGKWLLYTGTNNDLSNNEWQKS 66

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      +  D+ F VLHG  GEDG +Q + +L +IP+  
Sbjct: 67  GISAFLSPDATQKALWIFKGEGQESIKINIDIVFPVLHGKNGEDGTIQGLCQLAQIPFVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPL 133
            G+LASA+SMDK  +K  V++  VP    +         +       +   S PY IKP 
Sbjct: 127 CGVLASAVSMDKAFTKIAVATKNVPQARFVLVKEPELKHMEETIKKIESAFSYPYFIKPA 186

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI      + +   L ++    H  ++LIE+ + G E+        +  +    
Sbjct: 187 NAGSSVGISKANNKEELISGLYEAV--KHDRKVLIEETIIGREVETAVMGNDEIVVSGVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY++  S  V+ A +P +I ++++  A     A+  +G+SR DF   
Sbjct: 245 EILAAAEFYDFDAKYNNAESKTVVDADLPNEIKEKIRGYAKDVFDAVEGKGLSRVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             + ++ + EIN  PG T +S++P + A  G S +E++  ++E AS
Sbjct: 304 KENGEIIFNEINTLPGFTSISMYPMLFAATGLSVKEIITKLLELAS 349


>gi|251812201|ref|ZP_04826674.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|251804298|gb|EES56955.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           BCM-HMP0060]
          Length = 362

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|57867614|ref|YP_189255.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis RP62A]
 gi|282876510|ref|ZP_06285376.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|71153333|sp|Q5HMD8|DDL_STAEQ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57638272|gb|AAW55060.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis RP62A]
 gi|281294762|gb|EFA87290.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis SK135]
 gi|329735636|gb|EGG71919.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU028]
          Length = 357

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGKSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|134102567|ref|YP_001108228.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|291007062|ref|ZP_06565035.1| D-alanyl-alanine synthetase A [Saccharopolyspora erythraea NRRL
           2338]
 gi|133915190|emb|CAM05303.1| D-alanylalanine synthetase [Saccharopolyspora erythraea NRRL 2338]
          Length = 362

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 156/353 (44%), Gaps = 57/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +  + L+   F+V  + + +    VLA   P         
Sbjct: 8   VAVVFGGRSTEHGISCVSAGSVLAHLDRDRFEVVPVGITKEGAWVLAGDDPEALEIQDRR 67

Query: 52  -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+ F VLHG FGEDG +Q +LE+  
Sbjct: 68  TPEITSGKAVALPGDPTRDLMYLEPGRGGEVLSSVDVVFPVLHGAFGEDGTIQGLLEMAG 127

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKP 132
           +PY   G+L+SA++MDK  +K+++++ G+ V    ++ R         +  +  P  +KP
Sbjct: 128 VPYAGPGVLSSAVAMDKEYTKKLLAAEGLAVGTYEVLRRDQSTLDQQQRERLGLPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            + GSSLGI  +     +   + ++       +++IE  V G E+ CGV+      V   
Sbjct: 188 ARAGSSLGITKVTDHADLDDAIAEARRT--DPKVIIESAVTGREVECGVLEFPDGRVEAS 245

Query: 193 AVP------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                     S +Y YE KY    +   +PAKI  D  + ++  A  A +A+ C+G++R 
Sbjct: 246 LPAELRVTGDSTWYDYESKYLDDVTEFDIPAKIGDDAIERMREAAVTAFRALECQGLARV 305

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           DF       ++   E+N  PG T +S++P M A  G  +  LL  ++E A   
Sbjct: 306 DFFV-ADDGELIVNEVNTMPGFTAISLYPRMWAQTGVDYPTLLSTLIETAIAR 357


>gi|219667711|ref|YP_002458146.1| D-alanine--D-lactate ligase [Desulfitobacterium hafniense DCB-2]
 gi|219537971|gb|ACL19710.1| D-alanine/D-alanine ligase [Desulfitobacterium hafniense DCB-2]
          Length = 341

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 137/338 (40%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S E  VS+ S    A  L+   ++   I + +     L H            
Sbjct: 6   IAIIFGGCSEEHPVSVKSAGEVAKNLDLEKYEPFYIGITKDGVWQLCHYPEANWEKGSCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  DL F VLHG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAILSPDRSVQGLLVLEQGQYQRIPLDLVFPVLHGKFGEDGAIQGLLELSGIPYVGCDIP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V    G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVAGKAGIATPKFRTVTAKETIDAERLAYPVYVKPARSGSSFGVTKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE+ V G E+ C + G+    +          + +   
Sbjct: 186 RQEELLSAVEIAR--QYDSKVLIEEAVVGSEVGCAIFGNDLDLMAGEVDQICLSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +              ++PA I  +    VQ  A   ++A+GCRG++R D         V 
Sbjct: 244 HQENEPEKGSENSTLIVPADISPEARSRVQETAKAIYRALGCRGLARVDMFL-KEDGTVI 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S FP M A AG  F E++  +V  A
Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340


>gi|225376500|ref|ZP_03753721.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
 gi|225211672|gb|EEG94026.1| hypothetical protein ROSEINA2194_02142 [Roseburia inulinivorans DSM
           16841]
          Length = 351

 Score =  168 bits (425), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 165/345 (47%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   + AL + G  V  +DV     D+   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVSKALRENGHNVILLDVFMGYSDKEENLTGIFDRTEEVS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVKDIPETAPDLAKVKASRKDQSDCFFGPNVINMCRMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +L  I YT +G L+SAL+MDK  +KQ+  + G+P    I + +           +  P V
Sbjct: 123 DLFGIKYTGTGYLSSALAMDKGMAKQLFIAGGIPTPQGISMKKENRKDSAKELGLKLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++ +      L ++  W   D L+IE+YV+G E + GV+ D     
Sbjct: 183 VKPCCGGSSIGVTIVRTEDEFKSALDEAFKWE--DNLIIEEYVEGREFSVGVI-DYKALP 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P   FY Y+ KY + ++    PA++P +I +++Q  A    + +G    SRSDFL
Sbjct: 240 IIEIAPIQGFYDYKNKYKAGSAVETCPAELPEEITEQMQHYAERVAEVLGLNTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  + +++ LE N  PGMTP S+ P+ A   G +F +L   ++E
Sbjct: 300 LN-KNNEIYCLEANTLPGMTPTSLLPQEAGVLGINFNQLCEKLIE 343


>gi|325283553|ref|YP_004256094.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
 gi|324315362|gb|ADY26477.1| D-alanine--D-alanine ligase [Deinococcus proteolyticus MRP]
          Length = 360

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/333 (26%), Positives = 148/333 (44%), Gaps = 35/333 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S E EVSLSS ++  +AL    F+V+ + + +    +                 
Sbjct: 28  LLAGGQSEEHEVSLSSARSVLAALPQDRFEVTAVVISKQGRWLPPAETAQALGAGAAESG 87

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                         D+ F +LHG  GEDG VQ +L L  +P+  SG+L S++ MDK+ +K
Sbjct: 88  GEPMLQRVSDTAGYDVVFPLLHGPMGEDGTVQGLLTLAGLPFVGSGVLGSSVGMDKIMTK 147

Query: 98  QVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +V+ + G+P       +R                +  P  +KP   GSS+G+  +     
Sbjct: 148 RVLEAAGIPQVAWREASRAEWRRDPQGVQSRAAELGFPLFVKPANMGSSVGVSRVTGAGE 207

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYS 207
           +   L  +   +    +         E+  G+    D            +DFY Y+ KY+
Sbjct: 208 LAEALELAFGHDRRVIVEAAAGAKPREVEVGILGNDDPVASPVGELRFDTDFYDYDTKYT 267

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
              +  ++PA +P  + + +Q LA  A+QA+ C G+SR DF +   + ++   EIN  PG
Sbjct: 268 GGRAEMLIPAPLPEGVSERIQELALRAYQALDCAGLSRVDFFYVEETGELLLNEINTMPG 327

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            T  S++P +    G S+ EL+  ++E A   R
Sbjct: 328 FTTTSMYPSLLQAHGLSYPELVTRLIELALEER 360


>gi|238911487|ref|ZP_04655324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Tennessee str. CDC07-0191]
          Length = 364

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVTNEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|225571398|ref|ZP_03780394.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
 gi|225159874|gb|EEG72493.1| hypothetical protein CLOHYLEM_07496 [Clostridium hylemonae DSM
           15053]
          Length = 354

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 147/351 (41%), Gaps = 51/351 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSL SG      L + G K   +DV                      
Sbjct: 3   IIVLAGGLSPERDVSLISGAGICRTLRERGHKAFLLDVYLGLPYDSDKLNEVFDLPDAGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIASGIKTTAPDIEAVRASRPDQSECYLGPNVVELCRLADITFMGLHGSVGENGKMQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYV 129
           ++L I YT    L  A+SM+K+ +KQV     VP      +   T +    +     P V
Sbjct: 123 DVLGIKYTGPNSLGCAMSMNKLVAKQVFKMTRVPTPRGTSLTEETKNTPLDELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSSLG+ +   ++     + +S   +H D+++IE ++ G E  CG++   +L +
Sbjct: 183 VKPCSSGSSLGVYICHTEEDYKEAVRRSFDEDHQDEVVIEPFIKGREYACGILAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI      F           +    P  +     K++QR    A  A+     +R+DF+
Sbjct: 243 VEIIPRDEVFSYENKYQDGGATEICPPVSLDAKTMKKIQRAGEKAFDALRMDVYARADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D    + + LE+N  PGMTP S+ P  A  AG  + EL   ++E++  +R
Sbjct: 303 VDETDGRFYCLEMNGLPGMTPTSLLPRAALNAGMDYGELCEKIIEESMKVR 353


>gi|210620965|ref|ZP_03292350.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
 gi|210154949|gb|EEA85955.1| hypothetical protein CLOHIR_00293 [Clostridium hiranonis DSM 13275]
          Length = 293

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 91/293 (31%), Positives = 144/293 (49%), Gaps = 9/293 (3%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGNFG 63
           MGGISSERE+SL SG     +L+   ++  ++ +D    ++       D AF  LHG FG
Sbjct: 1   MGGISSEREISLKSGAGVFESLDREKYEPIKVVIDEKTDIITKIPDDVDFAFLALHGKFG 60

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDS 120
           EDG VQ++LE  +IPY+  G L+SA+ MDK  SK++  + G+P    I    +     D 
Sbjct: 61  EDGCVQSVLETRDIPYSGCGPLSSAMCMDKNISKKICKASGIPTADWITVKSIEEIDYDR 120

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP  GGSS+   +IK+   I   + Q        +++IEQY+ G E T  
Sbjct: 121 IEEMGYPVFVKPNSGGSSVATFMIKEKAGIEDAVRQGLEV--DTEVMIEQYLPGEECTSF 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++             + +F+ +E KYSS N        +   +  ++   + +   A  C
Sbjct: 179 ILDGEVFPTV-SIKSEQEFFDFEAKYSSDNGAVEEVVYLEESLQNKLNGYSRMCWDAFNC 237

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           R   R DF+    +   + LE+N  PG+T  S+ P  AA  G S+ +LL  ++
Sbjct: 238 RAYVRVDFII--SNGVPYVLELNTLPGLTATSLIPRSAAARGISYSQLLDKLI 288


>gi|323490561|ref|ZP_08095767.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
 gi|323395827|gb|EGA88667.1| D-alanine--D-alanine ligase B [Planococcus donghaensis MPA1U2]
          Length = 356

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 148/338 (43%), Gaps = 43/338 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49
           + +L GG S+E EVSLS+  A   A++   ++V  I + +                +  L
Sbjct: 5   IGLLYGGKSAEHEVSLSTALAVTKAIDFNAYEVYPIYITQDGEWRKGQSLEEPATTIEQL 64

Query: 50  -------KP---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                  KP               D+   +LHG  GEDG VQ +LE+L IPY  +G+LAS
Sbjct: 65  QLTEGTGKPNDISSFLPTQTSEALDVIVPLLHGPNGEDGTVQGLLEVLNIPYVGNGVLAS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSS 138
           +  MDK+  KQ+    G+   P +   R   D+               P  +KP   GSS
Sbjct: 125 SAGMDKVVMKQLFKQAGLEQTPYVYFIRRDWDNNQGFWLDKIEAELVWPVFVKPANLGSS 184

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI      + + + + ++  ++    +        IE+      + +  V     P   
Sbjct: 185 VGISKADNREELIVAVKEALKFDRKIVIEQGVVAREIEVGVLGNDEPACSVAGEIKPLKA 244

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY   N+  ++PA++   +Y ++   A  A + + C G+ R+DF     + ++ 
Sbjct: 245 FYDYQAKYKDGNTAMIIPAELDEAVYAKLVVDAKKAFKILDCSGLVRADFFVTA-NNEIL 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG TP S+FP +  + G  + EL+  ++  A
Sbjct: 304 INEVNTLPGFTPFSMFPLLWEHTGVPYPELIERLITLA 341


>gi|160881909|ref|YP_001560877.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160430575|gb|ABX44138.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 353

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 157/347 (45%), Gaps = 50/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG SSE EVS  S     + ++   + +  + + +    +L              
Sbjct: 6   IVVLFGGQSSEHEVSCVSAVTVINHIDLDHYDIVLVGITKEGKWLLTGSVEDITSGVWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                    + K D+ F VLHG FGEDG VQ +LEL  +PY   
Sbjct: 66  GKKTAILSPDRSKPSLLIMEDNKVEYQKVDVVFPVLHGLFGEDGTVQGLLELAGVPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLK 134
           G+LAS++SMDK+ +K +V S G+               +N+     ++ IS P  IKP  
Sbjct: 126 GVLASSVSMDKLYTKIIVDSLGIRQAAYEPVYAKELEEMNKVVERIENRISYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS GI        + + L +++   H  ++L+E+ + G E+ C V    +A       
Sbjct: 186 AGSSKGITKAHNRDDLIVGLKEAA--EHDRKILVEETIVGREIECAVLGGMEAKASGVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY Y+ KY++ +S  ++  ++P    +E+   A    +A+    +SR DF  + 
Sbjct: 244 ILAAAEFYDYDAKYNNADSKTIISPELPEGKAQEISDAAVKIFRAVDGYSLSRVDFFLEK 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            + ++ + EIN  PG T +S++P +    G +  +L+  +++ A   
Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWEAKGIAKPQLVEKLIQTAFTR 350


>gi|319399570|gb|EFV87825.1| D-alanine--D-alanine ligase [Staphylococcus epidermidis FRI909]
          Length = 357

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 341


>gi|242241490|ref|ZP_04795935.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
 gi|242235033|gb|EES37344.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis W23144]
          Length = 362

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 82/339 (24%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAIDKERYQVDIIYITNDGEWKKKDNITQEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VINDVETGEISQLLSKGSLGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEEELKSGIAEAF--QFDRKLVIEQGINAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKIKLDIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVT-DDNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTAYSMYPNLWKNMGLSYPDLIAKLIDLA 346


>gi|83949547|ref|ZP_00958280.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
 gi|83837446|gb|EAP76742.1| D-alanine--D-alanine ligase [Roseovarius nubinhibens ISM]
          Length = 271

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 122/276 (44%), Positives = 168/276 (60%), Gaps = 8/276 (2%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D GF+V ++D    +   L  +KPD+ FN LHG +GEDG VQ +LE L IPY+HSG+LA
Sbjct: 2   RDEGFEVVEVDAGPDLVSRLTEIKPDVVFNALHGRWGEDGCVQGLLEWLRIPYSHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL+MDK +SK V    G+PV  S+L  R  + ++H+++PPYV+KP   GSS+G+ ++ +
Sbjct: 62  SALAMDKQKSKDVYRRAGLPVVESVLAPRDEVRARHVMAPPYVVKPNNEGSSVGVYIVHE 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             + P  L         + +++E Y  G ELT  V+GD +L VT+I      +Y Y  KY
Sbjct: 122 AANAPPQLSDDMP----ETVMVETYAPGRELTTSVLGDRALGVTDIIT--EGWYDYHAKY 175

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
           S   S H  PA +P +I +     A  AH A+GCRG+SR+DF +D       +  LE N 
Sbjct: 176 SVGGSRHEFPANLPKEITEACLDYAQRAHAALGCRGLSRTDFRWDEARGVDGLIVLETNT 235

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE AA  G SF +L  W+VEDASC R
Sbjct: 236 QPGMTPTSLSPEQAAGIGMSFGQLCRWIVEDASCDR 271


>gi|329895282|ref|ZP_08270924.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
 gi|328922404|gb|EGG29747.1| D-alanine--D-alanine ligase [gamma proteobacterium IMCC3088]
          Length = 310

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 6/300 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG SSEREVSL SG      L     +V  +D   S   +      D  FN+LHG
Sbjct: 11  VAVLLGGTSSEREVSLMSGATVVDNLAPLCAQVRSVDPVNSN-WLEQLDGVDFVFNILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ +L  L +P + SG+L +AL MDK+RSK +    G+PV  + ++   T   
Sbjct: 70  GSGENGSVQGLLATLGLPQSGSGVLGAALGMDKLRSKAIWRDAGLPVAEAAVLASDTDFE 129

Query: 121 QHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             + S     +KP   GSS+G+ +    + +      +S   +   +  E+ + G E T 
Sbjct: 130 AVIQSLGEVFVKPAYEGSSIGMSIASSAEELAQAYKSAS--EYQGPVFAERRIVGEEYTV 187

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD +L    +      FY Y  KY S ++ +  P  +  +   E+  LA  A +AI 
Sbjct: 188 AILGDRALPAIRL-QAHEIFYDYHAKYVSNDTQYFCPCGLSKEREAELADLALAAFKAID 246

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C    R DF+ D    + + LE N  PGMT  S+ P  A  AG S + LL  ++E +   
Sbjct: 247 CAVWGRVDFMVDQQ-GQPYILEANTVPGMTSHSLVPMAAKAAGLSVQGLLREIIELSLAR 305


>gi|300924095|ref|ZP_07140089.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|301330768|ref|ZP_07223366.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
 gi|300419691|gb|EFK03002.1| D-ala D-ala ligase [Escherichia coli MS 182-1]
 gi|300843281|gb|EFK71041.1| D-ala D-ala ligase [Escherichia coli MS 78-1]
          Length = 364

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++ + F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSATSLAQVPGKHEHQLIDAQNGQPLLTVDVIFAIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +LASA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 126 PFVGSDVLASAACMDKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K        +    ++    ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVG--VSKVTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLTSDFYAYDTKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|154509346|ref|ZP_02044988.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798980|gb|EDN81400.1| hypothetical protein ACTODO_01874 [Actinomyces odontolyticus ATCC
           17982]
          Length = 378

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 95/363 (26%), Positives = 158/363 (43%), Gaps = 70/363 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE E+S S+     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70

Query: 37  -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68
                                    D D     V+        D+ F +LHG +GEDG +
Sbjct: 71  SVTAGSTRVALTPGEGNLVELTYEGDPDSPDSRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120
           Q + E+  + Y   G+ +SA+SMDK  +K         V     V        +   MD 
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGQWELVTARQWDADSTACMDR 190

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P+ + +++  NH  ++++E  + G E+ CG
Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASISGREVECG 248

Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G  S   +      EI VP+ +FY YE KY         PA +  +    ++  A+ A
Sbjct: 249 VLGSRSDWRSGTAPLGEIVVPEGEFYDYEHKYVDDVVGLSCPADVAPEYADRIRETAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  S  V   E+N  PG TP+S++P+M A AG S+ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFLDEASDTVIINEVNTMPGFTPISMYPQMWAAAGLSYPDLLTELLT 368

Query: 295 DAS 297
           +A+
Sbjct: 369 EAA 371


>gi|167772359|ref|ZP_02444412.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
 gi|167665462|gb|EDS09592.1| hypothetical protein ANACOL_03736 [Anaerotruncus colihominis DSM
           17241]
          Length = 357

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/348 (25%), Positives = 140/348 (40%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +AVL G ISSE EVSL S  +    +    + V  + + +             +   +  
Sbjct: 6   VAVLFGSISSEYEVSLRSAASVLRNIPRDRYDVVMLGITKDGRWFEYAGSIDDIESDRWL 65

Query: 52  --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D  F VLHG   EDG +Q +LE+  + Y
Sbjct: 66  QNGPVTPAFISPDRGAGGILRLLPDGPQPVAVDAVFPVLHGEHSEDGAIQGLLEMAGLAY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPS--------ILVNRFTMDSQHLISPPYVIK 131
              G+LASA  MDK  +  ++ + G+ + P            +            P  IK
Sbjct: 126 VGCGVLASAACMDKAVTHTILEAAGIEMTPYTVLTRGALAHFDETERMLAAKHGYPMFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLD 188
           P   GSS+G+   K    +   L ++       +++ E  V G EL C        A   
Sbjct: 186 PANTGSSVGVGKAKDAGGLCAALSEAF--RFDRKVIAETAVVGDELECAVLGNFDRAEAS 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                VP+ +FY Y  KY   ++   +PA+I  +  + +++ A  A  A+GC G+SR DF
Sbjct: 244 CVGEIVPRHEFYDYSGKYLDDSTDLYIPARISGEASERIRQTAVRAFAAMGCTGLSRVDF 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++    G  + EL+  ++E A
Sbjct: 304 FLTRE-GRVVLNEINTLPGFTSISMYPKLFEAVGLPYPELISRLIELA 350


>gi|288573418|ref|ZP_06391775.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
 gi|288569159|gb|EFC90716.1| D-alanine/D-alanine ligase [Dethiosulfovibrio peptidovorans DSM
           11002]
          Length = 308

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 103/304 (33%), Positives = 155/304 (50%), Gaps = 12/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           ++VL GG S ER VSL SGK  A  L+  G  V  +D+    ++   LA  +P+L F  L
Sbjct: 3   ISVLCGGDSPERNVSLDSGKEVAEGLKAKGHSVELMDLSSPEALFSFLAGDRPELCFVAL 62

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           HG +GEDG +QA+L++  +PYT SG    A++MDK  SK   ++ G+ V   + V+    
Sbjct: 63  HGGWGEDGRLQAVLDMAGVPYTGSGPSGCAVAMDKTLSKGAFAAAGLDVPWGVAVHPGEG 122

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            +           V+KP  GGS++   ++ ++  +   L  +      ++ L+E YV G 
Sbjct: 123 SSPMKALSKWGTLVVKPCCGGSTVATYIVSEEDELRKALSSAWELE--NRALVEAYVAGR 180

Query: 176 ELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           ELT  V+ D            +P  +FY Y  K     S +V PA +   + + V R A 
Sbjct: 181 ELTVTVVEDRGIPRAFPIVEILPDGEFYDYRAK-YGGGSRYVSPADLEPSVVEVVSRSAE 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +AH+  GC   SR D   D    + F LEIN  PGMT  S+ P+ A   G+SF +LL  +
Sbjct: 240 IAHRVSGCSIYSRVDIRLDGK-NRPFVLEINTVPGMTSNSLVPKAAMAGGFSFPDLLDHI 298

Query: 293 VEDA 296
           VE++
Sbjct: 299 VEES 302


>gi|258546155|ref|ZP_05706389.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
 gi|258518580|gb|EEV87439.1| D-alanine--D-alanine ligase B [Cardiobacterium hominis ATCC 15826]
          Length = 306

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 106/298 (35%), Positives = 158/298 (53%), Gaps = 8/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG SSEREVSLSSG A   AL  +G     +D  D      L       AF VLH
Sbjct: 8   VAVLYGGTSSEREVSLSSGAAVHEALVTSGVDAHLLDTRDHQALFNLKGQGFARAFIVLH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG VQAIL+   IPYT SG+LA AL+MDK+ +K+V  + G+PV P ++++  T  
Sbjct: 68  GRGGEDGQVQAILDWQGIPYTGSGVLACALAMDKVLTKRVWQTFGLPVKPDLVIDAATTY 127

Query: 120 SQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           ++ + +     + IKP   GSS+G+  +     +     ++      ++++ E +V G E
Sbjct: 128 AELVAALGGSHFAIKPALEGSSVGVSRVGNQAELEAAYQKAGGIR--EKIMAEPWVTGRE 185

Query: 177 LTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           LT  V+G   L   E+       FY Y+ KY + ++ +  P  I   +  +++ L   A 
Sbjct: 186 LTYPVIGGRVLPGIEVTASAEHLFYDYDAKYLAEDTRYRCPPPIDAALDGQLRELTRRAF 245

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            AIG +G +R DF+ D    + + LEIN+ PGMT  S+ P  A   G  F  L+  ++
Sbjct: 246 DAIGAKGWARVDFILDG-DNRPWILEINMVPGMTSHSLVPLAAREDGMDFVALVRQIL 302


>gi|284034929|ref|YP_003384860.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283814222|gb|ADB36061.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 315

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 100/310 (32%), Positives = 155/310 (50%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V Q DVD S+   L +  PD  F VLHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVADALRSVGVEVEQRDVDASLVERLRNDPPDAVFPVLHGVT 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------ 116
           GEDG ++ +L+L  +PY  +   A   + DK  +  +V S G+    S+++         
Sbjct: 69  GEDGALRQVLDLYGVPYVGADAAACRTAFDKPVASTMVRSAGLRSPESVVLGHDTFRELG 128

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP +GGS+LG  +++    +P  +   + + +G   LIE+YV
Sbjct: 129 AAALMEAVVGQLGLPLVVKPARGGSALGASIVRTIDELPSAM--VNCYAYGPVALIERYV 186

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G E+   V+               P S FY YE +Y++  +  V+PA++   +     +
Sbjct: 187 EGTEVAVTVVDTGDGPWALPAVEIQPDSGFYDYEARYTAGATQFVVPARLDAAVAAACAQ 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+A+G R +SRSD + D      ++LE+NV PGMT  S+ P  A  AG     L 
Sbjct: 247 AAVTAHRALGLRDLSRSDLVVDAQ-GVPWFLEVNVAPGMTETSLVPLAAEAAGIELGVLC 305

Query: 290 LWMVEDASCL 299
             ++  A+  
Sbjct: 306 RDLLATAAAR 315


>gi|299135996|ref|ZP_07029180.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
 gi|298602120|gb|EFI58274.1| D-alanine/D-alanine ligase [Acidobacterium sp. MP5ACTX8]
          Length = 372

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 156/351 (44%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S E E+SL S ++   A++   + V ++ + +    + +             
Sbjct: 8   VGILFGGKSGEHEISLRSARSILKAIDRKKYDVVELGITKEGRWLQSSAAQALLGGESQP 67

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F VLHG FGEDG +Q + EL +I Y  SG+L 
Sbjct: 68  SEDLSGETGLTIAAAAAEPAAGTGLDVVFPVLHGTFGEDGTIQGLFELADIAYVGSGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGS 137
           S+  MDK   K++  + G+P+ P + + R              +  +  P  +KP   GS
Sbjct: 128 SSAGMDKDAMKRMFFAAGLPMTPHVTLLRSEWRADAKKSTRLIEKTLQYPVFVKPANLGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-----ELTCGVMGDASLDVTEI 192
           S+GI  +K    + + +  ++S++    +       G+     E+           V   
Sbjct: 188 SVGISKVKSRADLAVAMDLAASFDRKIVIEQGVGGPGVKPRELEVAVLGNDTPEASVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            VP  +FY YE KY    +     ++PAK+     K+++ +A  A +A  C G++R DFL
Sbjct: 248 IVPAKEFYDYEAKYELNGADESVSIIPAKLTKAEEKKIRAMAIAAFRACDCAGLARVDFL 307

Query: 250 FDPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P S+    ++   EIN  PG T +S++P++   +G ++ +L+  ++E A
Sbjct: 308 MAPASKGKPAEIVLNEINTLPGFTSISMYPKLWGASGVNYSKLIDRLIELA 358


>gi|238786724|ref|ZP_04630525.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238725092|gb|EEQ16731.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 289

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/291 (32%), Positives = 153/291 (52%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D   S    L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDSPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125
           L++PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR   +             + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASDLPISPYVALNRQQFETLSSEELSACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L+++    H   +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQASELQAALVEAF--RHDTDVLIEKWLSGPEFTVAILGDE 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P    Y YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D    + + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGRFYLLEVNTSPGMTSHSLVPMAARESGLSFSQLVARILMLA 288


>gi|282861341|ref|ZP_06270406.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
 gi|282563999|gb|EFB69536.1| D-alanine/D-alanine ligase [Streptomyces sp. ACTE]
          Length = 401

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 96/366 (26%), Positives = 152/366 (41%), Gaps = 70/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I + R     L    P         
Sbjct: 35  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYDVLPIGITRDGRWALTADDPARMAISDRQ 94

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 95  VPDVDRLAQSAEGAVTLSVDPGNRDVVVGEPGAVPTVLGEVDVVFPMLHGPYGEDGTLQG 154

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
            LEL  +PY  +G+LASA+  DK   K+V +S G+PV P  +V     +           
Sbjct: 155 FLELSGVPYVGAGVLASAVGQDKEYMKRVFTSFGLPVGPYEVVRPREWESDRPAARKRIM 214

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +     +   + ++    H  + L+E  + G E+ 
Sbjct: 215 EFAAEHGWPLFVKPARGGSSMGITKVDDPSGLDEAIEEAR--RHDPKFLVESLLRGREIE 272

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  ++PA +  +   EV+RLA  A
Sbjct: 273 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSAAGLVPAPLTEEQTAEVRRLAVDA 332

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 333 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 391

Query: 295 DASCLR 300
            A+  R
Sbjct: 392 -AALNR 396


>gi|227069722|gb|ACP19236.1| ligase VanA [Enterococcus faecium]
          Length = 343

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VSL S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSLKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++  V          Y     
Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340


>gi|190572289|ref|YP_001970134.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia K279a]
 gi|190010211|emb|CAQ43819.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-ala-D-ala ligase A) [Stenotrophomonas maltophilia
           K279a]
          Length = 404

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 141/348 (40%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE EVSL S K    AL+   F+   + +D+     L+             
Sbjct: 46  VGIIFGGKSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 105

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+   ++HG  GEDG +Q +L ++ +
Sbjct: 106 LIALHRSGQSLAVRPGAEQAQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMINL 165

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA++MDK  +K+++          + +                +  P  +K
Sbjct: 166 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHEAAEVDADAVIAQLGLPLFVK 225

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K        L  +    +  ++L+E  V G E+ C V+G+     + 
Sbjct: 226 PANQGSSVGVSKVKDAAGFAEALALAL--RYDHKVLVESAVVGREIECAVLGNEHPQASV 283

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N+     V+PA I       ++++A  A+Q + C G++R D 
Sbjct: 284 CGEVVVHDEFYAYDTKYINANGADVVVPADIDAATQARIRQIARQAYQTLECAGMARVDV 343

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 344 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 390


>gi|40713144|emb|CAE53344.1| VanA protein [Actinoplanes teichomyceticus]
          Length = 345

 Score =  168 bits (424), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  VS+ S +  A +L+   ++   I + +     L              
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIATPRFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            +Q +   L  +       ++LIE+ V G E+ C +MG+    V       +  + +   
Sbjct: 186 TEQELKAALETAR--EFDSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          NST + PA IP +    VQ  A   ++A+GCRGI+R D         V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340


>gi|295698674|ref|YP_003603329.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
 gi|291157176|gb|ADD79621.1| D-alanine--D-alanine ligase B [Candidatus Riesia pediculicola USDA]
          Length = 308

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/303 (28%), Positives = 143/303 (47%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLH 59
           +A+L GG SSER +SL SGK  A++L+D G +   ID         +A ++ D  F  LH
Sbjct: 8   VAILYGGNSSERTISLKSGKNIANSLKDLGIQSDLIDTKYQFSIDRIASVRYDKIFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q IL+  ++ YT +G  +S +   K+ +K++  S  +P  P   +N+ +  
Sbjct: 68  GKNGEDGTIQRILDKFKMNYTGNGFYSSFIGTHKILTKKIWFSLKLPTAPFFYINKKSFF 127

Query: 120 SQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            Q           I  P +IKP   GSS+G+      +     L++S    +   ++IE+
Sbjct: 128 MQPRSAISSVFKKIGFPLIIKPDSEGSSIGVRKAFSLKEAERILVESF--KYDRYIIIEK 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G E T  ++    +  +       D              ++ P          ++++
Sbjct: 186 YIIGPEYTVSILNPYYILPSIKIDLYGDEIFSYGNKYDKFVEYICPGGSSQSKEILIKKI 245

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A++AIGC G+SR D   +      + LEIN  PGMT  S+    A  +G SF +L+ 
Sbjct: 246 ALAAYKAIGCFGLSRVDLKQN-YDGNFYLLEINTVPGMTDRSLVKIAAEQSGMSFSKLVG 304

Query: 291 WMV 293
            ++
Sbjct: 305 KIL 307


>gi|328885299|emb|CCA58538.1| D-alanine--D-alanine ligase [Streptomyces venezuelae ATCC 10712]
          Length = 379

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 93/365 (25%), Positives = 153/365 (41%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SA++   + V  I +       L    P         
Sbjct: 13  VAVVFGGRSSEHAISVVTAGAVLSAIDRDKYDVLPIGITTDGRWALTADAPERMAIADRA 72

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 73  LPNVADLAESETGGVVLSVDPADRQVVLTEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 132

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  ++     +           
Sbjct: 133 LLELSGVPYVGAGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWEQNPAAARKKIV 192

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 193 EFAAEHGWPLFVKPARGGSSMGITKVDDLSGLDEAIEEAR--RHDPKILVESLLRGREIE 250

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         +++ ++PA I  +   E+QRLA  A
Sbjct: 251 CGVLEFEDGPRASVPAEIPPVTNHDFYDFEAKYIDSASGIVPAPIGDEATAEIQRLAVAA 310

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 311 YEAVSCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 369

Query: 295 DASCL 299
            A   
Sbjct: 370 AALTR 374


>gi|224582216|ref|YP_002636014.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
 gi|224466743|gb|ACN44573.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Paratyphi C strain RKS4594]
          Length = 370

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|62178991|ref|YP_215408.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161615441|ref|YP_001589406.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Paratyphi B str. SPB7]
 gi|62126624|gb|AAX64327.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. SC-B67]
 gi|161364805|gb|ABX68573.1| hypothetical protein SPAB_03212 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|322713448|gb|EFZ05019.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Choleraesuis str. A50]
          Length = 364

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|16759358|ref|NP_454975.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. CT18]
 gi|16763760|ref|NP_459375.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|29142870|ref|NP_806212.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|167992222|ref|ZP_02573320.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|168232345|ref|ZP_02657403.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|168237486|ref|ZP_02662544.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|168261195|ref|ZP_02683168.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|168819018|ref|ZP_02831018.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|194446690|ref|YP_002039619.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194472780|ref|ZP_03078764.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194735047|ref|YP_002113409.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197249513|ref|YP_002145360.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|200390819|ref|ZP_03217430.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204926723|ref|ZP_03217925.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|213161233|ref|ZP_03346943.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E00-7866]
 gi|213427803|ref|ZP_03360553.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E02-1180]
 gi|213582565|ref|ZP_03364391.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-0664]
 gi|213622190|ref|ZP_03374973.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-2068]
 gi|213647649|ref|ZP_03377702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. J185]
 gi|289828466|ref|ZP_06546324.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E98-3139]
 gi|60392163|sp|P0A1F0|DDLA_SALTY RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|60392164|sp|P0A1F1|DDLA_SALTI RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|25293549|pir||AC0549 D-alanine,D-alanine ligase A [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|256032847|pdb|3I12|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032848|pdb|3I12|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032849|pdb|3I12|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|256032850|pdb|3I12|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Subsp. Enterica Serovar
           Typhimurium Str. Lt2
 gi|153943|gb|AAA27056.1| D-alanine:D-alanine ligase (EC 6.3.2.4) [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16418883|gb|AAL19334.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. LT2]
 gi|16501649|emb|CAD08835.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi]
 gi|29138502|gb|AAO70072.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhi str. Ty2]
 gi|194405353|gb|ACF65575.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL254]
 gi|194459144|gb|EDX47983.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CVM29188]
 gi|194710549|gb|ACF89770.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Schwarzengrund str. CVM19633]
 gi|197213216|gb|ACH50613.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Agona str. SL483]
 gi|197289552|gb|EDY28915.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Salmonella enterica subsp. enterica serovar
           Schwarzengrund str. SL480]
 gi|199603264|gb|EDZ01810.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Virchow str. SL491]
 gi|204323388|gb|EDZ08583.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Javiana str. GA_MM04042433]
 gi|205329453|gb|EDZ16217.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar 4,[5],12:i:- str. CVM23701]
 gi|205333511|gb|EDZ20275.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Kentucky str. CDC 191]
 gi|205344117|gb|EDZ30881.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Weltevreden str. HI_N05-537]
 gi|205349721|gb|EDZ36352.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Hadar str. RI_05P066]
 gi|261245663|emb|CBG23459.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. D23580]
 gi|267992083|gb|ACY86968.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 14028S]
 gi|301156992|emb|CBW16475.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. SL1344]
 gi|312911411|dbj|BAJ35385.1| D-alanine--D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. T000240]
 gi|320084652|emb|CBY94443.1| D-alanine-D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Weltevreden str. 2007-60-3289-1]
 gi|321225102|gb|EFX50163.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhimurium str. TN061786]
 gi|323128694|gb|ADX16124.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. 4/74]
 gi|332987328|gb|AEF06311.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhimurium str. UK-1]
          Length = 364

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|308067503|ref|YP_003869108.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
 gi|305856782|gb|ADM68570.1| D-alanine--D-alanine ligase [Paenibacillus polymyxa E681]
          Length = 362

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------------VL 46
           + ++ GG S E EVSL +  A  +A     +++    + ++                  L
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGALLSAPLASVDQL 67

Query: 47  AHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
              +                      D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLERAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136
           ASA  MDK   K++    G+P       N             + +  +  P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTSHDLVRNMETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194
           SS+GI      + +   +  +       ++++E+YVD  E+   V+G+     +     V
Sbjct: 188 SSVGISKANNREELEKAVDLAL--QFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIREAALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +   E+N  PG TP S++P +    G S+  LL  M+  A
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYASLLDRMIALA 347


>gi|290957134|ref|YP_003488316.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
 gi|260646660|emb|CBG69757.1| D-alanine-D-alanine ligase [Streptomyces scabiei 87.22]
          Length = 385

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 152/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITREGRWFLTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVEELAESREGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------- 120
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 MLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQLDEAAARKKII 198

Query: 121 --QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 199 DLAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIAEAQ--RHDPKILVEAALRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P++  Y         ++  ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPETHAYYDFDAKYIDSTPGIVPAPLTPEETAEVRRLAVDA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P M   +G  + EL+  +++
Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTLPGFTPISMYPAMWQASGIEYPELVDRLIQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|282909396|ref|ZP_06317211.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283958862|ref|ZP_06376307.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|282326666|gb|EFB56964.1| D-alanyl-alanine synthetase A [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|283789580|gb|EFC28403.1| D-alanine--D-alanine ligase [Staphylococcus aureus subsp. aureus
           A017934/97]
          Length = 356

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S+E EVS+ + +   +A+    + V  I +                      
Sbjct: 6   ICIVFGGKSAEHEVSILTAQNVLNAIGKDKYHVDIIYITNDGDWRKQNNITTEIKSTDEL 65

Query: 45  ------------VLAH----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                       +L         D  F +LHG  GEDG +Q + E+L++PY  +G+L++A
Sbjct: 66  HLENGEALEISQLLKESSSGQPYDAVFPLLHGPNGEDGTIQGLFEVLDVPYVGNGVLSAA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEHNILKLVNDKLNYPVFVKPANLGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCSNEVELKEGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPEATWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDEDVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P++    G S+ EL+  ++E A
Sbjct: 303 YINETNAMPGFTAFSMYPKLWENMGLSYPELITKLIELA 341


>gi|331001070|ref|ZP_08324701.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
 gi|329569375|gb|EGG51153.1| D-ala D-ala ligase protein [Parasutterella excrementihominis YIT
           11859]
          Length = 313

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 105/302 (34%), Positives = 150/302 (49%), Gaps = 8/302 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S EREVSL SG     AL+  G  V + D        LA    D AF +LHG
Sbjct: 12  IAVVMGGSSGEREVSLMSGSGVLKALQSVGADVVKFDPAEQPLSDLA--GIDRAFLILHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG++Q ++E L+IPYT SG+ ASA+ +DK  +K V  + G+PV   +++   T   
Sbjct: 70  KGGEDGVIQGVMEFLKIPYTGSGVQASAIGIDKEMTKAVWEAQGIPVPRGMVLRNETDCE 129

Query: 121 QHLISPP--YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +         VIKP K GSSLG+  +K      +    + S   G  +L E+YV G ELT
Sbjct: 130 EAHRRFNGNLVIKPSKEGSSLGLYKLKNATLDQVKEAFAKSQEAGMTVLAEEYVFGRELT 189

Query: 179 C---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +                  Y +E KY S  + +V PA++P ++ ++++ +   A 
Sbjct: 190 VAVLDMGEGLKAFPIIEIKAPDGDYDFEHKYFSDETVYVCPAEVPENVTEKIKAVVEKAA 249

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+G    SR D +          LEIN  PGMTP S+ P  A   G S+ EL+  +   
Sbjct: 250 LAVGADAWSRIDVILRG-DGSFVLLEINTAPGMTPHSLVPLAARTCGISYEELVKQVAAR 308

Query: 296 AS 297
           AS
Sbjct: 309 AS 310


>gi|238791174|ref|ZP_04634813.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238729307|gb|EEQ20822.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 289

 Score =  167 bits (423), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGIDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLIS 125
           L++PYT SG++ASAL+MDK+R+K V  + G+P+ P I +NR           M     + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYIALNRQQFETLSSVELMACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L ++    H   +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDQADQLHGALEEAF--RHDSDVLIEKWLSGPEYTVAILGDN 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P    Y YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSDELEQQLATLSLQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 288


>gi|297171472|gb|ADI22472.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_07A21]
          Length = 363

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 150/344 (43%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E EVS+ S ++  +A++   + V    +D+                    
Sbjct: 6   VVLLFGGRSAEHEVSVVSARSVYAAIDREQYDVVLAGIDQQGRWYFGGKDSESLSLSTFV 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  L   + D+ F +LHG +GEDG VQ +LEL  + Y  +
Sbjct: 66  PDEQVPARLSTTGPYLVSEDGNYLPGSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPL 133
           G+ ASA+ MDK+ ++ + ++ G+P     ++ R                    P  +KP 
Sbjct: 126 GVAASAVGMDKVLARAIFTASGLPQTQYSVIMRSDWRRAQASVLERLEGEHDYPLFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVT 190
             GSS+GI      Q +   L  +S   +  +L+IE+ V+     E              
Sbjct: 186 NLGSSVGISKAHDRQGLQAGLELAS--QYDTKLIIERSVENARELECAVLGNEYPKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P ++FY Y  KY    S  V+PA +     + ++ LA    +AI C G++R DF  
Sbjct: 244 GEIIPGAEFYDYTTKYIDDQSELVVPAVLEKSETESIRELAIRTFKAIDCSGLARVDFFM 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            P    V   EIN  PG TP+S++P++ A AG ++ +L+  +++
Sbjct: 304 RP-DGSVLVNEINTMPGFTPISMYPKLWAAAGVAYGDLIDRLIQ 346


>gi|291541890|emb|CBL15000.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 355

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/350 (28%), Positives = 154/350 (44%), Gaps = 56/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+EREVS+SSG   A AL   G +V  +D                       
Sbjct: 3   IVVLAGGLSTEREVSISSGTLVAEALRSKGHEVVLLDVFMGYEENICDIDALFKQNYSFT 62

Query: 38  ----VDRSVGLVLAHLK------------------------PDLAFNVLHGNFGEDGLVQ 69
               +   V   + ++K                         D+ F  LHG  GE+G +Q
Sbjct: 63  DGNSIGDDVENTITNIKEAKENRLDKTSRYIGRNVIEICAEADITFLALHGGEGENGQLQ 122

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A L+L  I YT SG L SAL+M+K  +K V     +      L              P +
Sbjct: 123 ATLDLFGIKYTGSGYLGSALAMNKGLTKSVFMQKNINTPSGELYKNEKDALAWN-MFPCI 181

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+  ++        + ++    + D++++EQ+V G E + G++G  +L  
Sbjct: 182 VKPCSGGSSVGVSKVENADQYKKAVKEAL--KYEDEIVVEQFVTGREFSVGLIGGKALPP 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                PKS  Y Y  KY +  +    PA I  +  K+++  A  A++A+     +R DFL
Sbjct: 240 I-EIAPKSGMYDYAAKYQAGATVETCPADIDEETDKKLRDAATEAYEALHLESYARIDFL 298

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            D      + LE N  PGMTP S+ P+ AA  G S+ +L   ++E +   
Sbjct: 299 LD-KGGFTYCLEANTLPGMTPTSLLPQEAAVEGISYPDLCEKIIEISLAK 347


>gi|302865483|ref|YP_003834120.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302568342|gb|ADL44544.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 377

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 98/359 (27%), Positives = 160/359 (44%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +  T  +         
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181
            +  P  +KP + GSS+GI  +     +   + ++    H   +L+EQ V G EL CGV 
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDDLVAAVEEAF--RHDHVVLVEQGVTGRELECGVL 244

Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                             ++ Y  KY       ++PA +P ++ + ++ L+  A  AIG 
Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ E++  +V  A   
Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPEVVDRLVALAFTR 363


>gi|256827952|ref|YP_003156680.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
 gi|256577128|gb|ACU88264.1| D-alanine/D-alanine ligase [Desulfomicrobium baculatum DSM 4028]
          Length = 302

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 104/295 (35%), Positives = 154/295 (52%), Gaps = 5/295 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG S EREV+LS  +     L   G +V+  D  R + GL  A    + AF  LHG+
Sbjct: 5   LIAGGWSGEREVALSGARQIEKGLLTLGHQVTHFDPARDLRGLYEAAAGHEFAFINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120
            GEDGLVQ +LE + +PY  S   AS L+++K  SKQ+  + G+P      V    + + 
Sbjct: 65  PGEDGLVQCLLERIGMPYQGSDSRASLLALNKAVSKQIFEAAGLPTPAWEFVPASHVAEW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           + L+  P V+KP  GGSSLG+ ++  +  +   L Q         LL E  + G ELTCG
Sbjct: 125 RPLLPFPLVVKPNTGGSSLGVGIVASEDELEAYLAQPEIAGQD--LLAEALIRGQELTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+    L    I     +F+ YE KY +  +  + PA IP ++ + +Q +A  AH A+G 
Sbjct: 183 VLEGCVLPPILIRPKSGEFFDYESKYVAGATEEICPAPIPAELTERLQVMARAAHDALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              SR+DF+        + LE+N  PGMT  S+ P+ A   G SF +LL  ++E 
Sbjct: 243 SDYSRADFMVTA-DGMPYLLEVNTLPGMTATSLLPQEAQAVGLSFEQLLTRLIEL 296


>gi|148985012|ref|ZP_01818255.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|147922710|gb|EDK73827.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Streptococcus pneumoniae SP3-BS71]
 gi|301800019|emb|CBW32612.1| D-Ala D-Ala ligase A [Streptococcus pneumoniae OXC141]
          Length = 321

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG+S EREVS +S K  + +L   G+ V  ID+ +     +  +           
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+            +D       P VIKP++ GSS GI + +  +   +   + 
Sbjct: 127 IVASSVGIKCAS-----NLMVDRIQANDFPIVIKPIRSGSSKGIKIFQNKKQFDIYYKEH 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                   + +E+Y+ G E + G++G+  L V      K+ FY Y  KY+   +  V+PA
Sbjct: 182 PEL---GSVFVEKYIKGREFSVGILGETVLPVI-EIKVKNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|293397144|ref|ZP_06641418.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
 gi|291420615|gb|EFE93870.1| D-alanine--D-alanine ligase [Serratia odorifera DSM 4582]
          Length = 368

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG S+E EVSL S K    A++   F+V+ + +D+     +              
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGQWHINDASNYLLHAENPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  LIALNHSNNNVALVPGQQSRQLIAADGAGALGQLDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  +G+L SA+SMDK  +K+++   G+ V P +                  +  P  +K
Sbjct: 126 PFVGAGVLGSAVSMDKDVTKRLLRDAGLAVAPFVTLTRANRNKYDFAQLSERLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  Q     +  +   +   ++L+E  + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSRVQDRQQYEAAVALAF--SFDHKVLVESAIVGREIECAVLGNDQPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      +N        PA I      +++++A  A +A+ C G++R D 
Sbjct: 244 CGEIVLNDEFYSYDTKYINEQGAQVVVPAAISEAASDKIRQVALKAFRALDCLGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   V   EIN  PG T +S++P++ A +G  +R+L+  ++E A
Sbjct: 304 FLTADDN-VIINEINTLPGFTNISMYPKLWAASGVDYRQLITRLIELA 350


>gi|224368043|ref|YP_002602206.1| DdlA [Desulfobacterium autotrophicum HRM2]
 gi|223690759|gb|ACN14042.1| DdlA [Desulfobacterium autotrophicum HRM2]
          Length = 309

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 168/304 (55%), Gaps = 13/304 (4%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG 60
           A+L GGISSEREVSL+ G     AL+   + + + D    +  ++   +  D+A  +LHG
Sbjct: 7   ALLSGGISSEREVSLNGGFQVYEALDKERYDIVRYDPATDLATLVNDAETIDVALLILHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRF 116
            FGEDG VQ +L+LL+IPY  +G+L SA++M+K+ SK++    G+P              
Sbjct: 67  PFGEDGTVQGLLDLLDIPYQGAGVLGSAIAMNKLVSKRLYLQAGIPTPEFLSFSRTDKVD 126

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P V+KP+  GSS+G+ ++K+++++   L +       + +L+E YV G+E
Sbjct: 127 LHACVERLGLPIVVKPVSAGSSVGMSIVKQEKNLGAALEKGFEQ--DEAVLLEAYVKGLE 184

Query: 177 LTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           LTC V+G+  ++   +         +F+ Y+ KY +  +  + PA+I   + K VQ  A 
Sbjct: 185 LTCAVVGNQEIEAMPVIEILPGEGHEFFDYDAKYVAGRTQEICPARIEESVRKTVQAHAI 244

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+  +G SR+D +     R V  LE N  PGMT  S+ P  A  AGYSF +LL  +
Sbjct: 245 EAHKALFLKGYSRTDMIL--SDRGVTVLETNTIPGMTETSLLPRAAKVAGYSFSQLLDRL 302

Query: 293 VEDA 296
           +E A
Sbjct: 303 IELA 306


>gi|56123460|gb|AAV74569.1| D-alanine:D-lactate ligase [Eggerthella lenta]
          Length = 342

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ +   E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISVCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|304385279|ref|ZP_07367624.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
 gi|304328486|gb|EFL95707.1| D-alanine--D-alanine ligase [Pediococcus acidilactici DSM 20284]
          Length = 368

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 56/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 20  IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 79

Query: 39  ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                       ++V  +L     D  F  LHG  GE+G VQA+
Sbjct: 80  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 137

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVI 130
           L+L +I YT SG LAS ++MDK  SK+++    +     ++      +  Q     P V+
Sbjct: 138 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 197

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  GGSS+G +++  ++ +   L  +      D++++E+++ G E + GV+ + ++   
Sbjct: 198 KPNSGGSSVGTMIVHDEEELADSLRDAY--RFDDEIIVEEFITGREFSLGVVNEQAMPAI 255

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI V    +       +   +  + P  I  +++ E++R+A    + +G     R DFL 
Sbjct: 256 EIVVNDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFLV 315

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +     V+ +E N  PGMTP+S+ P+ A  AG S+ +L   ++
Sbjct: 316 NDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 356


>gi|270291006|ref|ZP_06197229.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
 gi|270280402|gb|EFA26237.1| D-alanine-D-alanine ligase [Pediococcus acidilactici 7_4]
          Length = 351

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 56/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG     AL   G + + ID+                      
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITDALRAKGHEATMIDLFLGYDLQEGQTVEDVFETSNTD 62

Query: 39  ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                       ++V  +L     D  F  LHG  GE+G VQA+
Sbjct: 63  SDYEIQTDVLTDADIEKLRTDGTVGLFGKNVLEILRAA--DFVFLALHGGDGENGKVQAV 120

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVI 130
           L+L +I YT SG LAS ++MDK  SK+++    +     ++      +  Q     P V+
Sbjct: 121 LDLNDIKYTGSGTLASGIAMDKAISKEIMLYNDIKTARFVVLHEEDGIHPQLDFGFPVVV 180

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  GGSS+G +++  ++ +   L  +      D++++E+++ G E + GV+ + ++   
Sbjct: 181 KPNSGGSSVGTMIVHDEEELADSLRDAY--RFDDEIIVEEFITGREFSLGVVNEQAMPAI 238

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI V    +       +   +  + P  I  +++ E++R+A    + +G     R DFL 
Sbjct: 239 EIVVNDGWYDYEHKFKTGTTTQFITPPDIDEEVHDEMKRVAVKTMKVLGMTNYGRVDFLV 298

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +     V+ +E N  PGMTP+S+ P+ A  AG S+ +L   ++
Sbjct: 299 NDQG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESII 339


>gi|254495868|ref|ZP_05108778.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
 gi|254354904|gb|EET13529.1| D-alanine--D-alanine ligase A [Legionella drancourtii LLAP12]
          Length = 364

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 71/344 (20%), Positives = 142/344 (41%), Gaps = 51/344 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            +L GG S E EVSL S  +  + L+   + +  + +D+     +               
Sbjct: 8   VLLYGGKSGEHEVSLVSAASVLANLDVEKYHIIPVAMDKDGLFYVHQYEDLLAYKDKLPV 67

Query: 49  ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                             +  ++ F V+HG   EDG +Q +LEL  + Y    +L+SA+ 
Sbjct: 68  VTERSKSLDNLLINGRLAIDAEVVFPVVHGPLYEDGCLQGLLELAGVAYVGCDVLSSAIG 127

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGI 141
           MDK  +++V    G+      L++             D       P  +KP   GSS+GI
Sbjct: 128 MDKDMTRRVACIDGLKSARYKLLSWHAPLSERQRFCQDVAAEFGWPLFVKPCAMGSSVGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GVMGDASLDVTEI 192
              K    + + +  +    + +++L+E +V+G E+                +      +
Sbjct: 188 HKAKSMDELVVAVDDAL--RYDEEILVESFVEGREIELSVLESAVPSMAPRVSVAGEIRV 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P   +        S  +  ++PA +   +  E+++ A      + C+G++R DF  + 
Sbjct: 246 HHPDGFYSYSAKYLESNQTDLLIPAALSTTLQAELKQAAADIFTRLKCKGMARIDFFVND 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  +++ EIN  PG T +S++P++   +G ++ +LL  ++  A
Sbjct: 306 KTESIYFNEINTLPGFTSISMYPKLWQESGLAYPDLLDELIRIA 349


>gi|322614661|gb|EFY11590.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315996572]
 gi|322620180|gb|EFY17052.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-1]
 gi|322623474|gb|EFY20313.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-3]
 gi|322629228|gb|EFY26007.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 495297-4]
 gi|322631948|gb|EFY28702.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-1]
 gi|322637314|gb|EFY34016.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 515920-2]
 gi|322642000|gb|EFY38610.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 531954]
 gi|322646237|gb|EFY42751.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. NC_MB110209-0054]
 gi|322652496|gb|EFY48850.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. OH_2009072675]
 gi|322653341|gb|EFY49674.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. CASC_09SCPH15965]
 gi|322660510|gb|EFY56746.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 19N]
 gi|322664662|gb|EFY60855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 81038-01]
 gi|322669285|gb|EFY65435.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MD_MDA09249507]
 gi|322670831|gb|EFY66964.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 414877]
 gi|322678931|gb|EFY74986.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 366867]
 gi|322681959|gb|EFY77984.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 413180]
 gi|322685212|gb|EFY81209.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 446600]
 gi|323194440|gb|EFZ79635.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609458-1]
 gi|323197024|gb|EFZ82166.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556150-1]
 gi|323203349|gb|EFZ88374.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 609460]
 gi|323206906|gb|EFZ91859.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 507440-20]
 gi|323210324|gb|EFZ95216.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 556152]
 gi|323214566|gb|EFZ99317.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB101509-0077]
 gi|323223123|gb|EGA07466.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB102109-0047]
 gi|323223963|gb|EGA08257.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB110209-0055]
 gi|323230110|gb|EGA14230.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. MB111609-0052]
 gi|323233848|gb|EGA17937.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009083312]
 gi|323238458|gb|EGA22516.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 2009085258]
 gi|323244146|gb|EGA28155.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. 315731156]
 gi|323246306|gb|EGA30289.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2009159199]
 gi|323251932|gb|EGA35795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008282]
 gi|323257929|gb|EGA41608.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008283]
 gi|323261058|gb|EGA44650.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008284]
 gi|323265012|gb|EGA48511.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008285]
 gi|323272575|gb|EGA55982.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Montevideo str. IA_2010008287]
          Length = 364

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ +   I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIASFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|167464092|ref|ZP_02329181.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
 gi|322383284|ref|ZP_08057084.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321152404|gb|EFX45203.1| D-alanyl-alanine synthetase A-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 373

 Score =  167 bits (423), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/353 (25%), Positives = 153/353 (43%), Gaps = 59/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S E EVSL +  A   +++ + + ++   + +                    
Sbjct: 7   IGLIYGGKSGEHEVSLQTAFAVLQSIDFSKYDITPFYITKKGDWKSGPALTAPVSSKEML 66

Query: 46  ---------------LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLE 76
                          L   +               D+   +LHG FGEDG +Q + E+  
Sbjct: 67  MFGDREPAALDVFGGLQKREVVISSAIESQPETSVDVVLPLLHGTFGEDGTIQGLFEMAN 126

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PP 127
           IPY  +G+LASA+ MDK+  K+V +   +P C      R                    P
Sbjct: 127 IPYAGAGVLASAVGMDKVIMKKVFAQEDLPQCVFRHFTRSQWQKDQPFFLMGLEISIGYP 186

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             IKP   GSS+GI   +    +   + ++    +  +++IE++V+  E+   V+G+   
Sbjct: 187 CFIKPANLGSSVGISKARNRDELIKAVEEAF--KYDRKVIIEEFVEAREIEVAVLGNEEP 244

Query: 188 DVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +V+      +   SDFY Y+ KY   NS  V+PA IP +   ++Q LA  A +AI   G+
Sbjct: 245 EVSVPGEIISSKNSDFYDYKAKYQDGNSIMVIPADIPEETAAQIQELAIRAFKAIDGSGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           SR DF        +   EIN  PG TP S++P +   +G  + +LL  +++ A
Sbjct: 305 SRVDFFMRNSDGHILINEINTMPGFTPFSMYPLLWKESGKPYAQLLDELIDLA 357


>gi|327438466|dbj|BAK14831.1| D-alanine-D-alanine ligase [Solibacillus silvestris StLB046]
          Length = 357

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 144/339 (42%), Gaps = 44/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + +L GG S+E EVSLS+ KA   AL+   F V  I +       +              
Sbjct: 5   IGLLYGGKSAEHEVSLSTAKAVTQALDFNEFDVFPIFITLKGEWRVGPQLTEPAQTIEQL 64

Query: 48  ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F +LHG  GEDG VQ  LE+L IPY  +G+L 
Sbjct: 65  QFTTASDHSENNITQFIAKHMESPFDVIFPLLHGTNGEDGTVQGFLEVLNIPYVGNGVLG 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGS 137
           SA  MDK+  KQ+     +P  P     R   + +              P  +KP   GS
Sbjct: 125 SAAGMDKVVMKQLFEMAKLPQLPYEYFIRSEWEREKEAWIKRCEQSLGYPMFVKPANLGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI        +   +  +  ++    +        IEL        ++ V     P +
Sbjct: 185 SVGISKATNAAELEKAVQFALQYDRKIVIEQGVTAREIELAVLGNDTPNVSVAGEIKPMT 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY Y+ KY   ++  ++PA +  D+Y  +  +A  A +AI   G+ R+DF     + ++
Sbjct: 245 EFYDYDSKYKDGSTALIIPAPLQNDVYTNLVDMAKRAFKAIDGAGLVRADFFVTE-NNEI 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E+N  PG TPVS++P +  +   ++ +L+  +++ A
Sbjct: 304 YINEVNTMPGFTPVSMYPLLWQHTDVTYPQLIKELIDFA 342


>gi|298241035|ref|ZP_06964842.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
 gi|297554089|gb|EFH87953.1| D-alanine/D-alanine ligase [Ktedonobacter racemifer DSM 44963]
          Length = 348

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 144/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E  +S+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   VAILFGGCSEEHPISVKSAQEVAKHLDIEKYEPFYIGITKSGAWKLCDGPGANWENNNCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAMLSPDRSVHGLLVLEQGQYKTIRLDMVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  VV + G+      +V          +  P V+KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVVRNAGIATPNFWIVTADEDIDADRLPYPVVVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE+ V G E+ C ++G+    +          + +   
Sbjct: 186 RKEELLSAVETAR--QYDSKVLIEEAVVGSEVGCAILGNDLDVIVGEVDQIRLSHGFFRI 243

Query: 206 YSSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   N        T ++PA I  +    VQ+ A   ++ +GCRG+SR D        KV 
Sbjct: 244 HQENNPESGSENSTVIVPADISAEARLLVQQTAKAIYRTLGCRGLSRVDMFL-KEDGKVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S +P M A AG  F E++  MV  A
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAGAGLPFAEVIDRMVSFA 340


>gi|238754436|ref|ZP_04615791.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238707265|gb|EEP99627.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 289

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 100/291 (34%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D AF  LHG  GEDG +Q +L+ 
Sbjct: 2   SLLSGQAVLTGLREAGIDAYPIDTRDFPVTQLKERGFDKAFIALHGRGGEDGTLQGVLDF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           L++PYT SG++ASAL+MDK+RSK V  + G+PV P I ++R   ++            + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRSKLVWQASGLPVSPFIALSRQQFETLSSGDFAAGIAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP + GSS+G+  +     +   L ++    H + +LIE+++ G E T  ++GD 
Sbjct: 122 LPLIVKPSREGSSVGMSKVNHASELNAALQEAF--RHDNDILIEKWLSGPEFTVAMLGDE 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L       P   FY YE KY S    +  P+ +     +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSI-RIQPTGVFYDYEAKYLSDTKQYFCPSGLGEQQEQQLAELARQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A  AG SF +L+  ++  A
Sbjct: 239 VDVMQDG-DGGFYLLEVNTSPGMTSHSLVPMAAKQAGMSFSQLVTRILALA 288


>gi|212711834|ref|ZP_03319962.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
 gi|212685356|gb|EEB44884.1| hypothetical protein PROVALCAL_02909 [Providencia alcalifaciens DSM
           30120]
          Length = 367

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 55/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E EVSL S K   + L+ + F V  I +++                    
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRSKFDVCLIGINKEGQWHEYDEANFLLHGDDPA 65

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I              +   +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLHIAPFITILKSGRDEISYSATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  +       ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVNNESEFNAALDFAF--LFDVKVLIESAVKGREIECAVLGNEHPLASP 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V PA +  DI  +++ +A  A+QA+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLEHDISDKIRAIALEAYQALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                +  V   EIN  PG T +S++P++    G +++EL+  ++E 
Sbjct: 304 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIEL 349


>gi|225858876|ref|YP_002740386.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
 gi|225720907|gb|ACO16761.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetaseB)
           (D-Ala-D-Ala ligase B) [Streptococcus pneumoniae 70585]
          Length = 321

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 99/323 (30%), Positives = 157/323 (48%), Gaps = 33/323 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG+S EREVS +S K  + +L   G+ V  ID+ +     +  +           
Sbjct: 7   IVVLYGGLSEEREVSENSAKEISKSLLTLGYDVISIDLSQDCSYEIGEIEKSERGLNKQK 66

Query: 50  ------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D+ F   HG  GE+G +QAI ++ +I YT +  L++A+SMDK  SK
Sbjct: 67  VEIGSGIIDVCRKVDIVFLATHGGIGENGKLQAIFDVEKIDYTGNSFLSTAISMDKKLSK 126

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V SS G+            +D       P VIKP++ GSS GI +++  +   +   + 
Sbjct: 127 IVASSVGIKCAS-----NLMVDRIQANDFPIVIKPIRSGSSKGIKILQNKKQFDIYYKEH 181

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                     +E+Y+ G E + G++G+  L V      K+ FY Y  KY+   +  V+PA
Sbjct: 182 PEL---GSFFVEKYIKGREFSVGILGETVLPVI-EIKVKNGFYDYNNKYTVGAAEEVVPA 237

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           KI   +   +Q+ A+  H+A+G    SR+DF+ D     V+++E N  PGMT  S+ P+ 
Sbjct: 238 KISEKLTHTLQKSAYKIHKALGFNVYSRTDFIVDEK-GDVYFIESNSLPGMTKTSLLPQE 296

Query: 278 AAYAGYSFRELLLWMVEDASCLR 300
           A  AG  F  L   ++E +  +R
Sbjct: 297 AKAAGIDFPNLCERIIELSREIR 319


>gi|167757614|ref|ZP_02429741.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|237735168|ref|ZP_04565649.1| D-alanine-D-alanine ligase B [Mollicutes bacterium D7]
 gi|167702611|gb|EDS17190.1| hypothetical protein CLORAM_03164 [Clostridium ramosum DSM 1402]
 gi|229381944|gb|EEO32035.1| D-alanine-D-alanine ligase B [Coprobacillus sp. D7]
          Length = 346

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 83/337 (24%), Positives = 149/337 (44%), Gaps = 43/337 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--- 51
           VL GG SSE  VS  S  +  + L+   ++++ + +D   G          LA       
Sbjct: 7   VLCGGQSSEHIVSRMSCTSVLNNLDANKYEITLVGIDLDGGWHYLDAKQTDLAKNTWLDN 66

Query: 52  --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                         D+AF VLHG +GEDG +Q + EL ++PY    ++ S+++MDK+ +K
Sbjct: 67  SSMVEDVYGLLKNQDVAFPVLHGMYGEDGTIQGLFELAKLPYVGCRVMGSSVAMDKIYTK 126

Query: 98  QVVSSCGVPVCPSILVNRFTM------------------DSQHLISPPYVIKPLKGGSSL 139
           +++ + GVP   S+ V +                          +  P  IK  + GSS+
Sbjct: 127 KILDTVGVPQVKSVYVKKRYDEKLVVVTNTFDEIEEIEDYIVRELGMPCFIKASRSGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G         +   L +++ ++    +        +E       D  +      +P  +F
Sbjct: 187 GCYRCDNQTELIGKLSEAAKYDRHVVVEECIDCIELETAVLGNDDVIVSRVGQIMPHGEF 246

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y++E KY    S   +PA +   I +++++ A    +A+   G+SR DF  D  + K++ 
Sbjct: 247 YTFESKYEDEESKTCIPALVDEQIQEQIRQYAIKVFKAVDGHGLSRVDFFLDKKTNKIYL 306

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            EIN  PG T +S++P++    G ++ ELL  ++  A
Sbjct: 307 NEINTMPGFTKISMYPQLMNDFGITYPELLDRLIVLA 343


>gi|326385117|ref|ZP_08206786.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
 gi|326196150|gb|EGD53355.1| D-alanine/D-alanine ligase [Gordonia neofelifaecis NRRL B-59395]
          Length = 357

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 158/337 (46%), Gaps = 44/337 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            VL GG+S+E +VS  S     +A + + +++  + +D+                     
Sbjct: 9   VVLYGGVSAEHDVSRVSAAHVLAAADRSKYQLIPVGIDKRGAWHRNDAAAEALAAGAELP 68

Query: 45  --------------VLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                         VLA    D  + F +LHG  GEDG VQ +LEL ++PY   G+LAS+
Sbjct: 69  NSLDVDGPEVNPLQVLAGSPEDLTVVFPLLHGPHGEDGTVQGMLELFKLPYIGCGVLASS 128

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QHLISPPYVIKPLKGGSSLGI 141
           + MDK  +K+V +   +P C  +       D           +  P  +KP   GSS+G+
Sbjct: 129 VCMDKAMAKEVAARAEIPQCKWLTFRDGVDDPRQILTDAADQLGFPMFVKPANMGSSVGV 188

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDF 199
              +  + +   +  +    + D ++IE+ V G E+   V+G+A+ D +      P S+F
Sbjct: 189 SRAETLEELDAAINVAL--RYDDVVVIEEAVVGREIEVAVLGNAAPDASLPGEVKPGSEF 246

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY +  +  ++PA +  +   +V+ LA  A  A+ C G++R DF ++   R    
Sbjct: 247 YDYEDKYITGAAELMIPAPLSDEAIADVRELAADAFVALRCAGLARVDFFYEEGGRGWLL 306

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG TP S++P+M    G  + +L+  +V  A
Sbjct: 307 NEVNTIPGFTPASMYPKMWEATGIGYSDLIDRLVTLA 343


>gi|45580843|emb|CAG15003.1| ligase [Actinoplanes teichomyceticus]
          Length = 345

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  VS+ S +  A +L+   ++   I + +     L              
Sbjct: 6   IGIIFGGVSEEHPVSIKSAQEVAKSLDAEKYEPYWIGITKDGAWRLCDGPGADWEISSAR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  PAMLSPDRNVHGLLVQEDGRYREIRLDVVLPVLHGKLGEDGAMQGLFELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VVSS G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVVSSAGIAAATFWVVTPDEAPDPAQLTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            +Q +   L  +       ++LIE+ V G E+ C +MG+    V       +  + +   
Sbjct: 186 TEQELKAALETAR--EFDSKVLIEEAVVGSEIGCAIMGNDPDLVAGEVDRVALSHGFFRI 243

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          NST + PA IP +    VQ  A   ++A+GCRGI+R D         V 
Sbjct: 244 HQESEPERGSENSTFICPADIPAEARSLVQETAKAIYRALGCRGIARVDMFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGIPLSAVIDQIVSLA 340


>gi|294631605|ref|ZP_06710165.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
 gi|292834938|gb|EFF93287.1| D-alanine-D-alanine ligase [Streptomyces sp. e14]
          Length = 385

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 153/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++ + ++V  I +       L    P         
Sbjct: 19  VAVVCGGRSSEHGISVVTAGAVLRAIDRSKYEVLPIGITTDGRWALTADDPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDELAESTEGGVVLPVDPHNREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++     D           
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLRVGPYVVIRPREWDRDPAAARKKVV 198

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++L+E  V G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDGLAGLDEAIEEAR--RHDPKVLVEAAVRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P+   Y         ++  V+PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPQEHAYYDFEAKYIDSTPGVVPAPLTEEQTAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P+M    G S+ EL+  +++
Sbjct: 317 FEAASCEGLVRADFFL-AEDGGFVINEINTMPGFTPISMYPKMWEATGVSYEELVDRLIQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|315604701|ref|ZP_07879764.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315313713|gb|EFU61767.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 378

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 91/365 (24%), Positives = 157/365 (43%), Gaps = 70/365 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE EVS ++     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEVSCATAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALAFRDGKGQ 70

Query: 37  -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68
                                    D D +   V+        D+ F +LHG +GEDG +
Sbjct: 71  SVTAGATRVALTPGEGNLVELSYDGDPDSAASRVIGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120
           Q + E+  + Y   G+ +SA+SMDK  +K         V     V            ++ 
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAISMDKHLTKTVLAAAGIDVGRWELVTARQWESDPGACVER 190

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P  + +++  NH  ++++E  V G E+ CG
Sbjct: 191 IERLGFPVFVKPCRAGSSVGISRVTSREDLPTAIKEAA--NHDPRVIVEASVSGREIECG 248

Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G      +      EI VP+ +FY Y+ KY         PA++     + ++  A+ A
Sbjct: 249 VLGARPDWSSGTAPLGEIVVPEGEFYDYDHKYVDDVVGLSCPAEVSAAYAQRIRETAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  +  V   E+N  PG TP+S++P+M A AG ++ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFLDEATDTVIINEVNTMPGFTPISMYPQMWAAAGLNYSDLLSELLT 368

Query: 295 DASCL 299
           +AS  
Sbjct: 369 EASTR 373


>gi|14719504|pdb|1E4E|B Chain B, D-Alanyl-D-Lacate Ligase
          Length = 343

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 137/338 (40%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENENCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++  V          Y     
Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q      ++ +GCRG++R D        ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETVKKIYKTLGCRGLARVDMFLQDR-GRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG S  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGISLPELIDRLIVLA 340


>gi|315502030|ref|YP_004080917.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315408649|gb|ADU06766.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 377

 Score =  167 bits (422), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 97/359 (27%), Positives = 161/359 (44%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + V+ GG S+E EVS +S    A AL + G +V  + + R+ G+ L              
Sbjct: 7   IGVVFGGPSAEHEVSCASALGVARALAEQGHRVVALGITRTGGIRLLPEPVLAQHLGTVT 66

Query: 47  -------------------------------------AHLKPDLAFNVLHGNFGEDGLVQ 69
                                                 H + D+ F VLHG +GEDG+VQ
Sbjct: 67  AGRAIDDRLPVTGPAVELRRGTTTGTVAVGAADAPATVHAELDVVFPVLHGPYGEDGVVQ 126

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123
            +LE L +PY   GILASA+ MDK+  K+ + +  VP  P +  +  T  +         
Sbjct: 127 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEDVPTTPYVWFDEPTWRAASDPEKLVV 186

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181
            +  P  +KP + GSS+GI  +    ++   + ++    H   +L+EQ V G EL CGV 
Sbjct: 187 GLRGPLFVKPARMGSSIGISRVADGDNLIAAVEEAF--RHDHVVLVEQGVTGRELECGVL 244

Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                             ++ Y  KY       ++PA +P ++ + ++ L+  A  AIG 
Sbjct: 245 GGWQPEASAVGEVRVAGGWFDYRQKYFGDADPMIVPAPLPDEVTERIRELSVRAFTAIGG 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            G++R DFL+D  +  +F  E+N  PG T  S++P++ A +G ++ +++  +V  A   
Sbjct: 305 WGLARVDFLYDETTSDLFVNELNTLPGFTAHSMYPKVWAESGVAYPDVVDRLVALAFTR 363


>gi|254967019|gb|ACT97545.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V      +      
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V+  ++P    +++ + A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDINKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|261855073|ref|YP_003262356.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
 gi|261835542|gb|ACX95309.1| D-alanine/D-alanine ligase [Halothiobacillus neapolitanus c2]
          Length = 324

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 156/297 (52%), Gaps = 11/297 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPDLAFNVL 58
           +L+GG SSER +SL SG+    AL+ AG  V+ +DV R     L         D AF +L
Sbjct: 12  LLLGGWSSERVISLKSGETVLGALQRAGIDVTAMDVRRDFLPELLAAHQAKPFDRAFIIL 71

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
           HG  GEDG +QA+LELL IPYT + +  SA+ MDK+  K++    G+P  P   +     
Sbjct: 72  HGRGGEDGQIQAVLELLGIPYTGTSMGGSAIGMDKLACKRIWRGEGLPTPPWAVVATEIE 131

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +   +  P ++KP+  GSS+G+  + +   +     +++ +    Q+++E+Y+ G E
Sbjct: 132 AHRALDSLGLPVMVKPVAEGSSVGVAKVDQPDQLAAAFREAARY---GQVMMERYIRGGE 188

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            T  ++G  +L V  ++ P    Y ++ KY + ++ + +P+ +  +    +Q +A  A +
Sbjct: 189 YTVSLLGGRALPVIRLSTPHDF-YDFDAKYLANDTEYTIPSGLSAEEESAMQAIALKAFE 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            IG  G  R DF+ D    + + +E+N  PGMT  S+ P  A   G    EL L ++
Sbjct: 248 QIGGSGWGRVDFMRDEH-GQNWLIEVNTVPGMTDHSLVPMAARAVGIEIEELCLGIL 303


>gi|261340971|ref|ZP_05968829.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
 gi|288316835|gb|EFC55773.1| D-alanine--D-alanine ligase A [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKNRFDVVLLGIDKQGQWHVNDASQYLLNADDPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALNPSEISVATVPGVVQGQFINAGNAQALAQIDVVFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P +        +         +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDMTKRLLRDAGLNIAPFVTLTRANRESYTFAQLSAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVSSETQYTEAVRLAF--EFDHKVVVEQGIKGREIECAVLGNDFPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA +   I  +++ +A  A+QA+GC G++R D 
Sbjct: 244 CGEVVLNSDFYSYDTKYIDDQGAQVVVPADLDPAINDKIRAIAVEAYQALGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P +  V   EIN  PG T +S++P++   +G S+ +L+  ++E A
Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLSYPDLITRLLELA 350


>gi|291326269|ref|ZP_06123809.2| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
 gi|291315062|gb|EFE55515.1| D-alanine--D-alanine ligase A [Providencia rettgeri DSM 1131]
          Length = 372

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 84/347 (24%), Positives = 146/347 (42%), Gaps = 55/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E EVSL S K   + L+   F V  + +++                    
Sbjct: 11  VGVIFGGRSTEHEVSLQSAKNIINGLDRNKFDVCLLGINKEGQWHEYNESDFLLHGDDPS 70

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 71  RIALNTPKRAIALVPGKTSEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I V            +   +  P  IK
Sbjct: 131 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITVLKNERATTEYEATVAQLGLPLFIK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  +       ++LIE  V G E+ C V+G+     + 
Sbjct: 191 PANQGSSVGISKVSTESEFYAALDFAF--LFDMKVLIESAVKGREIECAVLGNEEPLASP 248

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V PA++   +  +++ +A  A++A+ C G+SR D 
Sbjct: 249 CGEIVLHDSFYAYHTKYIDENGASVVAPAQLDAAVSDKIREIALSAYRALNCSGMSRVDV 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                +  V   EIN  PG T +S++P++   AG ++ +L+  ++E 
Sbjct: 309 FLTE-NNDVVINEINTLPGFTNISMYPKLWQQAGMTYPQLISRLIEL 354


>gi|260559881|ref|ZP_05832060.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
 gi|260074105|gb|EEW62428.1| D-alanine:D-lactate ligase [Enterococcus faecium C68]
          Length = 342

 Score =  166 bits (421), Expect = 2e-39,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +  M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYTRMVAAAGITLPALIDSLITLA 339


>gi|329936757|ref|ZP_08286464.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
 gi|329303987|gb|EGG47870.1| D-alanine-D-alanine ligase [Streptomyces griseoaurantiacus M045]
          Length = 385

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 155/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLNAIDRTRYDVLPIGITREGRWALTADEPARMAIVDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  PPDVEELAEAAEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKDYMKRVFTSFGLKVGPYVVIRPREWERDRSAARKRIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDGLAGLDEAIEEAR--RHDPKILVEAELRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P +  Y         ++  ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEEGPRASVPAEIPPPDTHAYYDFEAKYIDSTPGLVPAPLTAEETAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF       +    EIN  PG TP+S+FP+M    G S+ EL+  ++E
Sbjct: 317 FEAASCEGLVRADFFLTEE-GEFVINEINTMPGFTPISMFPQMWQATGVSYGELVDRLIE 375

Query: 295 DA 296
            A
Sbjct: 376 SA 377


>gi|226229301|ref|YP_002763407.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
 gi|226092492|dbj|BAH40937.1| D-alanine--D-alanine ligase [Gemmatimonas aurantiaca T-27]
          Length = 344

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 111/343 (32%), Positives = 168/343 (48%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL+GG+S+ER+VSLSSG   A AL + G +V  +D    V                  
Sbjct: 7   ITVLLGGVSAERDVSLSSGLRIAMALREKGHEVICLDPAEGVLTRETERSLLASGVGSAP 66

Query: 50  -------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D  F  LHG  GEDG +QA+L+++ +PYT SG 
Sbjct: 67  PSLEALAGLESRALSPVLGTLPELTEADCLFLALHGGQGEDGTIQALLDMVGVPYTGSGH 126

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGS 137
           LASAL+MDK  SK V+ S GV     I+             D    +  P V+KP K GS
Sbjct: 127 LASALAMDKHLSKVVLRSAGVATANWIMAPAPDSAETLDADDVGRHLDWPVVVKPSKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           ++G+ +++  + +   + ++    + D+++IE++V G ELT G++GDA L       P  
Sbjct: 187 TVGLSIVRAPEELAAAVREAF--RYDDEVMIERFVPGRELTVGILGDAVLPTI-EIQPVK 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           + Y YE KY+   +   + A++  +   ++   A  A QA+  RG +R DF  DP   + 
Sbjct: 244 ELYDYECKYTPGMAKEFV-AELSPEEASKLADQAKRAFQALKLRGYARIDFRLDPQ-GQP 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           + LE N  PGMTP S+ P+ AA AG  F +L   +V+ A   R
Sbjct: 302 WCLEANTLPGMTPTSLIPQAAAAAGVLFPDLCERIVQLALAKR 344


>gi|161870650|ref|YP_001599823.1| D-alanine--D-alanine ligase [Neisseria meningitidis 053442]
 gi|161596203|gb|ABX73863.1| D-alanine--D-alanine ligase B [Neisseria meningitidis 053442]
          Length = 294

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 102/295 (34%), Positives = 153/295 (51%), Gaps = 7/295 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG SSERE+SL SG A  +AL+  G      D   +    L       AFN+LHG +GE
Sbjct: 1   MGGFSSEREISLDSGTAILNALKSKGIDAYAFDPKETPLSELKAQGFQTAFNILHGTYGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--H 122
           DG VQ  LELL IPYT SG+ ASA+ MDK R K +  + G+PV    +++  T       
Sbjct: 61  DGAVQGALELLGIPYTGSGVAASAIGMDKYRCKLIWQALGLPVPEFAVLHDDTDFDAVEE 120

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  +KP   GSS+G++ +K    +     +        +++ E+++ G E +C V+
Sbjct: 121 KLGLPMFVKPAAEGSSVGVVKVKGKGRLKSVYEELKHLQ--GEIIAERFIGGGEYSCPVL 178

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCR 241
               L      +P ++FY YE KY+  ++ +  P++   +  + + R  A    QAIG  
Sbjct: 179 NGKGLPGIH-IIPATEFYDYEAKYNRDDTIYQCPSEDLTEAEESLMRELAVRGAQAIGAE 237

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              R DFL D    K++ LEIN  PGMT  S+ P+ AA  G  F +L + +++ A
Sbjct: 238 SCVRVDFLKDT-DGKLYLLEINTLPGMTSHSLVPKSAAVTGVGFADLCIEILKTA 291


>gi|254967023|gb|ACT97547.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V      +      
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V+  ++P    ++ ++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDEKKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|254967013|gb|ACT97542.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967015|gb|ACT97543.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967021|gb|ACT97546.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 151/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V      +      
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V+  ++P    ++V++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVRKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|315937117|gb|ADU56124.1| hypothetical protein CA915-3 [uncultured organism CA915]
          Length = 346

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/342 (26%), Positives = 145/342 (42%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+S E  +S+ S K  A AL+   ++   I + R     L              
Sbjct: 6   IGIVFGGVSEEHPISIKSAKEVAKALDTEKYEPFWIGITRDGTWKLCDGPGADWESGNCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVLSPDRGTHGLLVMDSGRYETINLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V+SS G+      +V    M     +  P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYAVISSAGIRTPEFWVVTADEMPDAEQLVYPVFVKPARSGSSFGVTKVT 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             + +   + ++    +  ++LIE  V G E+ C ++G+    +       +  + +   
Sbjct: 186 GPEQLRSAVAEAR--QYDSKVLIEAAVIGSEIGCAILGNGDDLIAGEVDRVALSHGFFRI 243

Query: 206 YSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          NS  ++PA IP +    VQ  A   ++A+GCRG++R D         V 
Sbjct: 244 HQEDSPETGSENSNFIVPADIPTEARSLVQETAKAIYRALGCRGLARVDMFL-KEDGVVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PG+T  S +P M A AG S  E++  MV  A   +
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLSLTEVIDRMVSLALTGK 344


>gi|227517504|ref|ZP_03947553.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|227075024|gb|EEI12987.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
          Length = 344

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAI--LELLEIPYTHSGI 84
                                  + D+AF VLHG  G            L  IPY    I
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGGGEDGAIQGLFVLSGIPYVGCDI 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +
Sbjct: 126 QSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KS 197
              + +   +  +    +  ++LIEQ + G E+ C VMG+    +               
Sbjct: 186 NGTEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFR 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +
Sbjct: 244 IHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 VLNEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 341


>gi|294497054|ref|YP_003560754.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|295702419|ref|YP_003595494.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
 gi|294346991|gb|ADE67320.1| D-alanine--D-alanine ligase [Bacillus megaterium QM B1551]
 gi|294800078|gb|ADF37144.1| D-alanine--D-alanine ligase [Bacillus megaterium DSM 319]
          Length = 360

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 155/344 (45%), Gaps = 52/344 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHLK 50
            +L GG S+E +VSL +  A + A+    ++V  I +  +   +           +A L+
Sbjct: 6   GLLYGGKSAEHKVSLQTALAVSKAINHDKYEVHPIYITETGKWIRGTQLTGPLETVAQLE 65

Query: 51  P----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG VQ +LELL IPY  +
Sbjct: 66  IQDNGTAISPVSLNTEMFALTDSKTDDQLDVIFPLLHGPNGEDGTVQGLLELLNIPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLK 134
           G+LASA  MDK+  KQ+ +  G+P    +   R   ++           +  P  +KP  
Sbjct: 126 GVLASAAGMDKVVMKQLFAQAGLPQVEYVSFIRREWEADRTAAYEKVETLGYPCFVKPAN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEI 192
            GSS+GI      + +    +++       ++++E    G E+        +A+  V   
Sbjct: 186 LGSSVGISKCDNREELEAAFVEAF--LFDRKIIVEAAAVGREVEIGVLGNDEAACSVVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +PK  FY Y+ KY   ++  ++PA+I  + ++E+  LA  A +AI   G+ R+DF    
Sbjct: 244 ILPKKAFYDYKAKYEDGDTGLIIPAEITEEQHQEMSALAIKAFKAIDGSGLVRADFFLTS 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              K    E+N  PG TP S+FP +  +AG  + +L+  +V  A
Sbjct: 304 E-GKFIINEVNTMPGFTPFSMFPLLWKHAGVEYPDLIEKLVSLA 346


>gi|257785158|ref|YP_003180375.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257473665|gb|ACV51784.1| D-alanine/D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 319

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 105/309 (33%), Positives = 155/309 (50%), Gaps = 10/309 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AV+ GG S E E+++ SGK CA+AL++AGF  V  +DV ++   + LA    D+ +  +
Sbjct: 11  VAVVSGGWSDEHEIAMESGKQCAAALKEAGFINVDLLDVAEKDFVVALAQGDYDVVYVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+P    I V   T+
Sbjct: 71  HGRFGEDGCIQGLLEILHIPYTFSGVLASAMGTEKELSKLMYRQAGIPTPRGIDVPSGTV 130

Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +          +  P  +KP   GSS G+  +   + +P  L  +        +     
Sbjct: 131 FTDEQVDKLIEDLGFPMFVKPSGNGSSYGVTRVTSREELPAALKLAGEQGERILIEECVV 190

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              I +      + +       V   +FYS + KY   +  HV+PA++   +Y   Q LA
Sbjct: 191 GTEITVPVIGNDNPTALPIVEIVTGDEFYSIKTKYEPASLHHVIPARLEPAVYARAQELA 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH A+GCRG+SRSDF+      +   LE N  PGMT  S+ P+ A   G  F EL   
Sbjct: 251 IKAHNALGCRGVSRSDFIVTE-DGEPVVLETNTIPGMTARSLLPDSARTGGIDFPELCTR 309

Query: 292 MVEDASCLR 300
            +E A   R
Sbjct: 310 FIEFALEDR 318


>gi|301063848|ref|ZP_07204332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
 gi|300442051|gb|EFK06332.1| D-ala D-ala ligase N-terminal domain protein [delta proteobacterium
           NaphS2]
          Length = 311

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/304 (32%), Positives = 159/304 (52%), Gaps = 13/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +AVL GG S ER VS+ SG A   AL +  +     D    + L+     + DL  NVLH
Sbjct: 7   IAVLSGGWSKERSVSIKSGDAVLGALNNDKYDSRIFDPKEDLNLLWQKRGEIDLVLNVLH 66

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---- 115
           G FGEDG +Q +LE+  +P+  S +L+SA++M+K  SK+V  + G+ V   I++ R    
Sbjct: 67  GRFGEDGRIQGLLEIYGLPFMGSSVLSSAMAMNKRVSKEVYRNMGLLVPKDIILQRGGES 126

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                + ++  P VIKP+  GSS+GI +++ D  I   + ++      +++L+E+YV+G 
Sbjct: 127 SINKIKDVLGTPIVIKPVSEGSSIGISIMENDADIQSGIEKAF--EFAEEILVEEYVEGR 184

Query: 176 ELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T                 VPK    F+ ++ KY +  S  + PA +  DI ++   + 
Sbjct: 185 EITGAVLGRSALETLPLIEIVPKESHRFFDFDAKYVAGESNEICPAALDPDISEKASEIV 244

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+++ CR  SR+D +      +++ LE N  PGMT  S+ P  A   G+S   LL  
Sbjct: 245 KKAHRSLRCRDWSRTDMMI--KKDQIYVLETNTIPGMTETSLVPLAAKGRGWSLGHLLDR 302

Query: 292 MVED 295
           M+E 
Sbjct: 303 MIET 306


>gi|330684802|gb|EGG96495.1| D-ala D-ala ligase N-terminal domain protein [Staphylococcus
           epidermidis VCU121]
          Length = 356

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITNEIESTEDL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RIDNIPTGEISQLLSKGSSGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             +S P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEDELKSGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341


>gi|239637377|ref|ZP_04678359.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
 gi|239596977|gb|EEQ79492.1| D-alanine--D-alanine ligase [Staphylococcus warneri L37603]
          Length = 356

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 84/339 (24%), Positives = 148/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A++   ++V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAIDKDKYQVDIIYITNDGEWKKQDNITSEIESTEDL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RIDNIPTGEISQLLSKGSLGQSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             +S P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEFEKYENNILKLVNDKLSYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ V+  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEDELKSGIKEAF--QFDRKLVIEQGVNAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYADLIAKLIDLA 341


>gi|167757234|ref|ZP_02429361.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|237735682|ref|ZP_04566163.1| conserved hypothetical protein [Mollicutes bacterium D7]
 gi|167703409|gb|EDS17988.1| hypothetical protein CLORAM_02784 [Clostridium ramosum DSM 1402]
 gi|229381427|gb|EEO31518.1| conserved hypothetical protein [Coprobacillus sp. D7]
          Length = 349

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/335 (28%), Positives = 159/335 (47%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE EVSL S  A         + +  I + R+                   
Sbjct: 6   IAILFGGKSSEYEVSLQSAAAIIKNFPQEKYDLYLIGITRAGQWFHYDGEIEKISNDTWN 65

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                    + + + D    VLHG  GEDG VQ ++EL +IP  
Sbjct: 66  QELLNPVTVCLEPERQAVMEIVDNKIIYQQIDAVLPVLHGKNGEDGTVQGLMELAKIPVL 125

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G+LASAL MDK R+ Q+V + G+ V  S+LV+     +   ++ P  +KPLK GSS G
Sbjct: 126 GCGLLASALCMDKYRAHQLVKAAGIKVTRSVLVHNINDFNVKALNFPLFVKPLKAGSSYG 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIAVPKSD 198
           I  + K + +   L  +   N+ +++++E+ V+G E+ C ++G+  L     +       
Sbjct: 186 ISKVVKMEELTKALEYAF--NYDNEVIVEEAVEGFEVGCAIIGNDELTVGEVDEIELSGG 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ Y+ KY+   ST  +PA+I     +++Q  A + +Q + C+  +R D    P + ++ 
Sbjct: 244 FFDYDEKYTLKTSTIHMPARIDEVTARKIQETAKIIYQTLACQNFARVDMFLTP-NNEIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + E+N  PG T  S FP+M    G+ F EL+  +V
Sbjct: 303 FNEVNTIPGFTDHSRFPQMMKGVGFEFSELIDKIV 337


>gi|291523552|emb|CBK81845.1| D-alanine--D-alanine ligase [Coprococcus catus GD/7]
          Length = 343

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 150/340 (44%), Gaps = 51/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------DRSVGLV-- 45
           + VL GGIS+ER+VSL SG     AL+  G +V  +DV             ++ V     
Sbjct: 3   IVVLAGGISTERDVSLVSGMGIYKALKSKGHQVMLLDVFLGYANEDWKNVFEKDVDWTAS 62

Query: 46  ---LAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILEL 74
              +    P                            D+ F  LHG  GE+G +QA  +L
Sbjct: 63  VGAIKDQNPDIDAVKALRPDWKKNFFGPHVIDICQQADVVFMALHGENGENGKIQACFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I YT +  ++SA+ M+K  SK + ++ GVP    I + +        +  P V+K   
Sbjct: 123 NGIRYTGTDYVSSAICMNKAISKDLFAAGGVPTPVGIRLKKG-ETPDVKVPYPCVVKACC 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+++               ++ + ++++IEQY+ G E + GV+   +        
Sbjct: 182 GGSSVGVVMANN--DEEYAAALEEAFKYDEEVVIEQYIKGREFSVGVVDGKA-YPIIEIA 238

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P   FY Y+ KY + ++    PA++  +    +Q  A  A + +  +  +R DF+ D   
Sbjct: 239 PIHGFYDYKNKYQAGSTIETCPAELSEEKTLAMQAAAEQAFKVLRLKNYARMDFMMDEKE 298

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              + LE N  PGMTP S+ P+ A   G  + +L   +++
Sbjct: 299 D-FYCLEANTLPGMTPTSLLPQEAKVLGIEYADLCQLLID 337


>gi|254967025|gb|ACT97548.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  166 bits (421), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V      +      
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V+  ++P    +E ++ A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEEKKKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|161504434|ref|YP_001571546.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. arizonae
           serovar 62:z4,z23:-- str. RSK2980]
 gi|160865781|gb|ABX22404.1| hypothetical protein SARI_02546 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 370

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +   +          
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHEQQLINAQNGQPLPTIDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRANRHAFSFAEMESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ S   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYLQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDSPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTPE-NEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|332798369|ref|YP_004459868.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332696104|gb|AEE90561.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 363

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 86/347 (24%), Positives = 157/347 (45%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S  +    ++   + +  I + +     L              
Sbjct: 6   VGIIFGGQSGEHEVSLMSCVSVIQVMDKTKYDIIPIGITKKGNWKLFLGDISKIENGSWE 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                    +    D+ F VLHG  GEDG VQ++ EL+ IPY  
Sbjct: 66  DEAIPALLSPDPSCKCVITLKDGMESRYYLDVVFPVLHGPRGEDGTVQSLFELMNIPYVS 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKP 132
            G+ +SA+ MDK+ SK+++   G+P+              +     + +  +  P  +KP
Sbjct: 126 CGVTSSAICMDKVFSKKILEQSGLPIVDYKAFYKRELLARMPEIISEVEEFLGYPCFVKP 185

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI        +   +  ++   +  ++L+E+++D  E+ C V+G+   + +  
Sbjct: 186 ANLGSSVGISKAGGPSELESAMRLAT--QYDTKILVERFIDAREIECAVLGNDEPNASLP 243

Query: 193 --AVPKSDFYSYELKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              +P  DFY Y  KY   + + +L PA +       +Q LA  A + + C G++R DFL
Sbjct: 244 GEIIPSRDFYDYTAKYLDGDKSKLLLPAPVSRKDITRIQELAIKAFKTLDCSGMARVDFL 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +S  ++  E+N  PG T +S++P+M   +G S+++L+  ++  A
Sbjct: 304 MSKVSGNIYINELNTIPGFTRISMYPKMWEISGLSYKDLIDKLINLA 350


>gi|212704379|ref|ZP_03312507.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
 gi|212672204|gb|EEB32687.1| hypothetical protein DESPIG_02434 [Desulfovibrio piger ATCC 29098]
          Length = 304

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 103/295 (34%), Positives = 157/295 (53%), Gaps = 5/295 (1%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHGN 61
           ++ GG SSEREVSL+  +    AL   G  V+  D+  +   +L   +  D A   LHG+
Sbjct: 5   LIAGGWSSEREVSLTGARGMQEALLKRGHAVTFFDLLENFDELLETARQHDFALINLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGLVQA+LE  + PY  SG   S L+++K  +KQ+    G+P         R     
Sbjct: 65  PGEDGLVQAMLEKADCPYQGSGPSGSFLALNKAAAKQIFRMAGLPTADWEFLPVRPAEGW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +K   GGSSL +      Q +  D +    +  G+ +LIE  + G E+TCG
Sbjct: 125 EPRLPWPLFVKTTTGGSSLRLGRATNRQEL--DAIMDEIFAAGEGVLIEPQLPGKEITCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+ ++    I     D++ YE KY++  +  + PA +   +  EVQRLA  AH+A+G 
Sbjct: 183 ILGEEAMPPILIEPVAGDYFDYESKYATGGARELCPAPVSPAVTAEVQRLALAAHKALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G SR+DF+  P    +  LE+N  PGMTP S+ P+ AA  G  F +LL  ++E 
Sbjct: 243 KGYSRADFILGP-DDSLHLLEVNTLPGMTPTSLVPQEAAQLGMDFGQLLEKLIEL 296


>gi|153853961|ref|ZP_01995294.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
 gi|149753343|gb|EDM63274.1| hypothetical protein DORLON_01285 [Dorea longicatena DSM 13814]
          Length = 354

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 149/351 (42%), Gaps = 51/351 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DR------------ 40
           + VL GG+S ER+VSL SG      L + G +   +DV        D+            
Sbjct: 3   IIVLAGGLSPERDVSLLSGAGICKTLREMGHQAFLLDVFFGLPCDSDKLEEVFDRPDGGL 62

Query: 41  ----------SVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          L   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EISKGISTSVPDLDALRKSRPDQSPSEIGPNVIELCQMADITFMALHGSIGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129
           + L I YT    L   LSM+K+ +KQ+  + GVP           + T   +     P V
Sbjct: 123 DNLGIKYTGPNSLGCTLSMNKLVTKQIFKTSGVPTPRGTSLTSKTKDTPLDELGYYLPLV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G+ +   ++     + +S   ++ D+++IE ++ G E  CG++   +L +
Sbjct: 183 VKPCSNGSSIGVYICHTEEEYYDAIHKSFDVDNTDEVVIEPFIKGREFACGILAGKALPL 242

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            EI      F       +   S    P  +  +  + +QR    A +A+     SR+DF+
Sbjct: 243 VEIVPKDGLFDYANKYQAGGASEICPPVSLDEETQELIQRAGERAFEALRMDVYSRADFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                 + + LE+N  PGMT  S+ P+ A  AGY + EL   +++++   R
Sbjct: 303 VSDADGEFYCLEMNALPGMTAASLLPKAAKAAGYEYSELCEAIIQESIKAR 353


>gi|11345396|gb|AAG34685.1|AF310955_1 ligase VanB2 [Enterococcus faecalis]
 gi|11345406|gb|AAG34693.1|AF310957_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 PEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTMPGFTSYSRYPRMVAAAGITLPALIDSLITLA 339


>gi|319937766|ref|ZP_08012169.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
 gi|319807201|gb|EFW03815.1| D-alanine-D-alanine ligase B [Coprobacillus sp. 29_1]
          Length = 345

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 77/337 (22%), Positives = 150/337 (44%), Gaps = 43/337 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           ++ GG S+E  +S  S  +    +    + ++   +++     + +   D          
Sbjct: 6   IICGGQSTEHIISRMSCTSVLKNINKEKYDITLAGIEKDGTWYILNQTQDDLVNDSWLEG 65

Query: 53  ---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                          + + VLHG +GEDG +Q +LEL E+PY    +L S+++MDK+ +K
Sbjct: 66  AVKVEDVYGLLRQQEVVYPVLHGMYGEDGTIQGLLELAEVPYVGCKVLGSSVAMDKIYTK 125

Query: 98  QVVSSCGVPVCPSILVNRFTMDS------------------QHLISPPYVIKPLKGGSSL 139
           +++ + G+P   S+ V +    +                  +  +  P  IK    GSS+
Sbjct: 126 KILETVGIPQVKSLYVKKRYDGTLVVVDNTFDESADIADSVEKELRYPCFIKASNSGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G   + +++ +   L +++ ++    +        +E       D  +      +P   F
Sbjct: 186 GCYRVDEEKELMPRLEEAAQYDRKIVIEECVDCIELETAVLGNDDPIVSRVGQIMPHGVF 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y++E KY    S   +PA +   I +E++  A    +AI   G+SR DF  D  + KV+ 
Sbjct: 246 YTFESKYEDEESKTCIPALVDEKIQEEIRNYALKVFKAIDGHGLSRVDFFLDKKTNKVYL 305

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            EIN  PG T +S++P++ A  G ++ +L+  ++E A
Sbjct: 306 NEINTMPGFTKISMYPQLMADFGITYSDLIDKLIELA 342


>gi|254967017|gb|ACT97544.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 354

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 150/346 (43%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S       ++   + +  I +      +L              
Sbjct: 6   IAVLFGGQSSEHVVSCMSAANVIDQIDKDKYDLLLIGITEEGEWILTPSVEEIRNDTWRD 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     ++ D+ F VLHG  GEDG VQ +LEL  IPY   
Sbjct: 66  GRTHAVLSPDATRKCVIISEGDATKEVRVDVVFPVLHGLRGEDGTVQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V S G+     + V R  +          ++ +S P  +KP  
Sbjct: 126 GVLASAVSMDKLYTKLIVDSLGIRQADYVPVRRSQLQDMNSVIASVENKLSYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+      + +   L +++   H  ++L+E+ + G E+ C V      +      
Sbjct: 186 AGSSRGVNKADNREELVFALNEAA--KHDRKILVEETIIGHEVECAVFGGGLQEVKASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V+  ++P    ++V + A    +A+   G+SR DF  
Sbjct: 244 GEIMAAAEFYDFDAKYYNAESKTVVDPELPGHAAEDVSKAAVEIFKAVDGYGLSRVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +V + EIN  PG T +S++P +    G S   L+  ++  A
Sbjct: 304 TDA-GEVVFNEINTLPGFTAISMYPMLWEARGISKSRLVDDLINHA 348


>gi|21223916|ref|NP_629695.1| D-alanyl-alanine synthetase A [Streptomyces coelicolor A3(2)]
 gi|289768877|ref|ZP_06528255.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
 gi|6919858|sp|Q9ZBR9|DDL_STRCO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4007719|emb|CAA22403.1| D-alanine-D-alanine ligase [Streptomyces coelicolor A3(2)]
 gi|289699076|gb|EFD66505.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 389

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 97/362 (26%), Positives = 152/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P         
Sbjct: 23  VAVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERR 82

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 83  TPDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 142

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+  DK   K V +S G+ V P  ++                 
Sbjct: 143 LLELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIV 202

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 203 DFAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEAR--RHDPKILVEAALRGREIE 260

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P    Y         ++  ++PA +  +   EVQRLA  A
Sbjct: 261 CGVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIVPAPLTAEETAEVQRLAVAA 320

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V+
Sbjct: 321 FDAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQ 379

Query: 295 DA 296
            A
Sbjct: 380 AA 381


>gi|311280731|ref|YP_003942962.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
 gi|308749926|gb|ADO49678.1| D-alanine/D-alanine ligase [Enterobacter cloacae SCF1]
          Length = 366

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG SSE EVSL S K    A++   F V  + +D+     +              
Sbjct: 6   VGVVFGGKSSEHEVSLQSAKNIVEAMDKTRFDVVLLGIDKQGQWHINDASNYLLNDHDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSDVTLAQIPGKESQQLINADSGQPLPAIDVIFPIVHGTLGEDGSLQGMLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I + R   +          +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLSIAPFITLTRANRERVTFAEVSEKLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K +      +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKNEAQYQQAVALAF--EFDHKVVVEQGIIGREIECAVLGNDEPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA I   I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPADISPAINDKIRAIAIQAYQTLGCSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P +  V   EIN  PG T +S++P++   +G  +R L+  +++ A
Sbjct: 304 FLTPEND-VVINEINTLPGFTNISMYPKLWQASGLDYRSLISRLIDLA 350


>gi|282890537|ref|ZP_06299060.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281499534|gb|EFB41830.1| hypothetical protein pah_c022o126 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 788

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/322 (25%), Positives = 141/322 (43%), Gaps = 32/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+E EVSL+S +    +L+   ++  +  + +    VL +            
Sbjct: 455 IGILYGGKSTEHEVSLTSSQYICRSLDRDLYETHEFLITKEGKWVLKNEGDSEEFLISSQ 514

Query: 50  ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K DL F +LHG FGEDG +Q  LE+L  PY      +SA+ MDK  +K+++   
Sbjct: 515 VLQQLQKCDLLFPILHGTFGEDGTIQGFLEILGKPYVGCDHQSSAICMDKAIAKRLMQHA 574

Query: 104 GVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           G+     I  +     ++           +  P  +KP+  GSS+G+  +  +  +   +
Sbjct: 575 GIQTSSFIAFSETDWKNRAKDLLHEIREKLIFPIFVKPVHLGSSIGVQRVTNETELDAAI 634

Query: 155 LQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             +        +L+E  + G E           ++            + Y  KYS  N+T
Sbjct: 635 RNAF--AFDPVILVENEIAGREIEFAVLGNDQITVLPPGEVFSAGKIHDYRGKYSRDNAT 692

Query: 213 HVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
              P     + + E  +     A+QA  C+G++R DF  D  S   ++ EIN  PG TP 
Sbjct: 693 PSTPQADLPEKWMEEGKAIALKAYQAATCKGMARIDFFLD-QSGSFWFNEINPIPGFTPF 751

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S++P+M    G+S  EL+  ++
Sbjct: 752 SLYPQMCEANGFSNEELIDRLL 773


>gi|315645165|ref|ZP_07898291.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
 gi|315279586|gb|EFU42891.1| D-alanine/D-alanine ligase [Paenibacillus vortex V453]
          Length = 364

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 157/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +   +          
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMIPFYISKQGTWRIGSKRSAPFSQLEDL 67

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGQENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR   +          +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWEQGQYNVLKDIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193
           GSS+GI   K  + +   +   S+    D++++E++VD  E+   V+G+     +     
Sbjct: 188 GSSVGISKAKNREQLKSAI--ESALRFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D+   ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIEPDVADRLRELAINAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +   E+N  PG TP S++P +    G S+RELL  M+E 
Sbjct: 306 DGAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347


>gi|50082943|gb|AAT70093.1| D-alanyl-D-alanine ligase [Paenibacillus apiarius]
 gi|66731650|gb|AAY52016.1| VanA [Paenibacillus apiarius]
          Length = 343

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG S E +VS+ S K  A+ +    ++   I + RS    +              
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNINTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 50  ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKRMHGLLVMRDKGYQIQRIDAAFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYIIAKNDGIATPEFWVINKDDRPAAAAFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G++S  +          +     
Sbjct: 186 GADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +  +    ++  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIRDTAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG +  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLIVLA 340


>gi|255002846|ref|ZP_05277810.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str. Puerto
           Rico]
          Length = 333

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP++GGS++G+  I          L + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|255003979|ref|ZP_05278780.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Virginia]
          Length = 333

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 108/298 (36%), Positives = 169/298 (56%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D+++SVG +LA + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNKSVGQLLA-MAPDLVYNALHG 72

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 73  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 132

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP++GGS++G+  I          L + +    D++++E+YV G E+  
Sbjct: 133 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 190

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 191 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 249

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 250 CKTLSRVDFRYDVANKVLKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 307


>gi|83648822|ref|YP_437257.1| D-alanine-D-alanine ligase-like protein [Hahella chejuensis KCTC
           2396]
 gi|83636865|gb|ABC32832.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Hahella
           chejuensis KCTC 2396]
          Length = 331

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 102/333 (30%), Positives = 159/333 (47%), Gaps = 39/333 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDR 40
           +AVL GG S ER+VS++S      AL   G +V  +D                     + 
Sbjct: 3   IAVLFGGTSEERDVSIASAAQIIPALRSLGHEVFSVDTATGQLSGTDEMRLLQAGVAPEP 62

Query: 41  SVGLVLAHLK---------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
               V+A ++                D+ F  LHG  GEDG +QA+L+L  + YT S  +
Sbjct: 63  PSTSVIADVRGRAIALSAEAFNIRDVDVVFLALHGGAGEDGRIQAMLDLAGLAYTGSNHI 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA++MDK  SKQ+  + GVP    ++    + +    +  P V+KP K GS++G+ V++
Sbjct: 123 ASAVAMDKDLSKQLFRAAGVPTPDWLMAPASSDEVAQKLGWPVVVKPSKQGSTVGLSVVR 182

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   +   +  +   N+ D+++IE+++ G E T G++   +L V EI VP    + Y  K
Sbjct: 183 EASELAKAIELAM--NYDDEVMIEKFIPGREFTVGILDGRALLVGEIIVPNEI-FDYHAK 239

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y    ++ + PA I       +Q +A  AH A+     SR DF     +  V+ LE N  
Sbjct: 240 YQVGAASEIFPANISETDAAAMQEIALRAHAALKLGVYSRIDFRV-EDNGAVWCLEGNSL 298

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           PGMT  S+ P+ A  AG  F ELL  +   A  
Sbjct: 299 PGMTANSLLPQAARAAGIEFPELLERICRGAVT 331


>gi|320008327|gb|ADW03177.1| D-alanine/D-alanine ligase [Streptomyces flavogriseus ATCC 33331]
          Length = 394

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 99/366 (27%), Positives = 150/366 (40%), Gaps = 70/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A  SAL+   + V  I + R    VL    P         
Sbjct: 28  VAVVFGGRSSEHGISVVTAGAVMSALDRTKYNVLPIGITRDGRWVLTSDDPARMAITDRQ 87

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 88  VPDVDQLAGSARGAVALSVDPGNRDVVVGEPGSVPEVLGEVDVVFPVLHGPYGEDGTLQG 147

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
            LEL  +PY  +G+L+SA+  DK   K+V  S G+PV P  +V     D           
Sbjct: 148 FLELSGVPYVGAGVLSSAVGQDKEYMKRVFVSFGLPVGPYEVVRPREWDTDRPAARKRVM 207

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP +GGSS+GI  +     +   + ++    H  + L+E  + G E+ 
Sbjct: 208 EFAAEHGWPLFVKPARGGSSMGITKVDDAAGLDEAIEEAR--RHDPKFLVESLLSGREIE 265

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  ++PA +  +   EVQRLA  A
Sbjct: 266 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSAAGLVPAPLTDEQTAEVQRLAVEA 325

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S+FP M   +G  + EL+  ++ 
Sbjct: 326 FEAASCEGLVRADFFLT-DDGSFVINEINTMPGFTPISMFPRMWQASGVEYPELVDRLI- 383

Query: 295 DASCLR 300
            A+  R
Sbjct: 384 TAALNR 389


>gi|237730347|ref|ZP_04560828.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
 gi|226905886|gb|EEH91804.1| D-alanyl-alanine synthetase A [Citrobacter sp. 30_2]
          Length = 364

 Score =  166 bits (420), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSNDPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSETSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I        +    + +  +  P  +K
Sbjct: 126 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNSISFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K       D   + ++    ++++EQ + G E+ C V+G+     + 
Sbjct: 186 PANQGSSVG--VSKVTSEAQYDQAVALAFEFDHKVVVEQGIKGREIECAVLGNDHPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTAEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 350


>gi|302865845|ref|YP_003834482.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315502390|ref|YP_004081277.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|302568704|gb|ADL44906.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|315409009|gb|ADU07126.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 367

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 153/359 (42%), Gaps = 62/359 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +  +AL+   F+V  + + R    VLA   P         
Sbjct: 9   VAIVFGGRSPEHGISCVSAGSVLAALDPDEFEVVPVGITRQGQWVLASGDPSGLAIADRK 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITAGSGAELVLRADPAVGGLMVLDPAQGPVALADVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVI 130
           + +IPY  + + ASA +MDK  +K++ ++ G+PV P  ++        + +  +  P  +
Sbjct: 129 MADIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRAGMSLSDEDKERLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GV 181
           KP + GSS GI  +     +   L+ +       ++L+E  V G E+ C           
Sbjct: 189 KPSRAGSSFGITKVDDWADLDAALVTAREI--DSKVLVEGAVVGREIECGVLEGEAGGAP 246

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                 +V  I       +  +  ++     + +PA +P  + ++V+  A  A  A+ C 
Sbjct: 247 EASVLAEVRMIGDRDWYDFEAKYIFADEVCEYDVPADLPEPVARQVRDYATRAFTALDCS 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G++R DF   P    V+  EIN  PG TP S+FP M + +G  + +L+  ++  A   R
Sbjct: 307 GLARVDFFVTPQMD-VYLNEINTMPGFTPTSMFPRMWSASGLEYPKLVNRLIRTALHRR 364


>gi|197261642|ref|ZP_03161716.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
 gi|197239897|gb|EDY22517.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA23]
          Length = 364

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSGFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|56416508|ref|YP_153582.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222474876|ref|YP_002563291.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
 gi|81821304|sp|Q5PBK2|DDL_ANAMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767716|sp|B9KHS3|DDL_ANAMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56387740|gb|AAV86327.1| D-alanine--D-alanine ligase [Anaplasma marginale str. St. Maries]
 gi|222419012|gb|ACM49035.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Florida]
          Length = 334

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R     L  + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 74  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP++GGS++G+  I          L + +    D++++E+YV G E+  
Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 191

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPYDIYNLTLEWALKLHQCLG 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|84621981|ref|YP_449353.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|122879012|ref|YP_198991.6| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365921|dbj|BAE67079.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae MAFF
           311018]
          Length = 367

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T            +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V +   +       + +  +  ++L+E  V G E+ C V+G+A    + 
Sbjct: 186 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350


>gi|254994730|ref|ZP_05276920.1| D-alanine--D-alanine ligase (ddlB) [Anaplasma marginale str.
           Mississippi]
          Length = 334

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 105/298 (35%), Positives = 164/298 (55%), Gaps = 5/298 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G+  + +D++R     L  + PDL +N LHG
Sbjct: 14  VAVLCGGSSPEREVSLAGGKRVADALGRLGYNATVLDLNRESVGQLLAMAPDLVYNALHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V  +L++L +  THS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 74  VQGEDGCVSGLLDILGLACTHSHVAASSVGMDKVLTKHVLKSLGIDFPKFDVLTKEELLS 133

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P+VIKP++GGS++G+  I          L + +    D++++E+YV G E+  
Sbjct: 134 AKEVLPYPFVIKPVRGGSTIGVHAIFSKSEYLD--LSAHADTLEDRMIVEEYVSGQEVQT 191

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V    ++   E+   +   YSY+ KY      H+ PA +P DIY      A   HQ +G
Sbjct: 192 AVFLGRAIGTMELLF-EGRIYSYDAKYVEGLCEHIFPANLPHDIYSLTLEWALKLHQCLG 250

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE-MAAYAGYSFRELLLWMVEDA 296
           C+ +SR DF +D  ++ +  LEIN  PGMT  S  PE +    G +F  ++  +V+DA
Sbjct: 251 CKTLSRVDFRYDVANKALKLLEINTHPGMTVSSTLPEVLWLRCGLNFDHVVDLIVQDA 308


>gi|325920616|ref|ZP_08182529.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
 gi|325548907|gb|EGD19848.1| D-alanine--D-alanine ligase [Xanthomonas gardneri ATCC 19865]
          Length = 380

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 19  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLNADDPA 78

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 79  RIALHRSGRGVALLPGAHQQQLRPTQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 138

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
            +  SG+L SA++MDK  +K+V+   G+ V P +  NR T               P  +K
Sbjct: 139 AFVGSGVLGSAVAMDKDMAKRVLRDAGLEVAPFVCFNRHTAAHADVHALVAQFGLPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++  +        + +  +  ++L+E  V G E+ C V+G+A+   + 
Sbjct: 199 PANQGSSVGVSQVRTAEQFAA--ALALALAYDHKVLVEAAVTGREIECAVLGNATPQASV 256

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   ++      V+PA I     + +Q++A  A+QA+ C G++R D 
Sbjct: 257 CGEVVVHDAFYSYQTKYISEHGAEIVIPANIDAQTQQRIQQIAVQAYQALDCAGMARVDV 316

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 317 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 363


>gi|254524840|ref|ZP_05136895.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
 gi|219722431|gb|EED40956.1| D-alanine--D-alanine ligase A [Stenotrophomonas sp. SKA14]
          Length = 370

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG SSE EVSL S K    AL+   F+   + +D+     L              
Sbjct: 15  VGIIFGGRSSEHEVSLQSAKNILDALDRERFEPVLVGIDKQGQWHLSQPDTFLLNGDDPS 74

Query: 47  -------------------AHLKP----------DLAFNVLHGNFGEDGLVQAILELLEI 77
                              A L+P          D+   ++HG  GEDG +Q +L +  +
Sbjct: 75  RIALHPSGQSLAVLPGTEQAQLRPSDAAATLGQIDVVLPIVHGPLGEDGALQGLLRMANL 134

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R              +  P  +K
Sbjct: 135 PFVGSPVLGSAVAMDKDVTKRLLRDAGLQVAPWLCIRRHQAAAVDVETVIAQLGLPLFVK 194

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K+       L  +    +  ++L+E  V G E+ C V+G+A    + 
Sbjct: 195 PANQGSSVGVSKVKEAAGFAQALELAL--RYDHKVLVESAVVGREIECAVLGNAQPQASL 252

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      V+PA I       +Q++A  A+QA+ C G++R D 
Sbjct: 253 CGEVVVHDEFYAYDTKYINEGGADVVVPADIDAATQARIQQIALQAYQALECAGMARVDV 312

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   +   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 313 FLTA-DGDIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 359


>gi|11345394|gb|AAG34684.1|AF310954_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARAGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   L+  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPALIDSLITLA 339


>gi|6448488|emb|CAB61227.1| vana protein [Bacillus circulans]
          Length = 343

 Score =  166 bits (420), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 139/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANIDKEKYETLYIGITKSGVWKMCEKPCVEWENDNCC 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+VLHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIDHVDVAFSVLHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      + N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAENAGIATPEFWVFNKDDKPMADTFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G++S  V          +     
Sbjct: 186 GADELDAAIELAGQ--YDSKILIEQAVLGCEVGCAVLGNSSAFVVGEVDQIRLQHGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +  +    +Q  A   + A+GCRG++R D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITVPADLSAEERGRIQETAKKIYNALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A  G +F EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAVGIAFPELIDRLIVLA 340


>gi|291085781|ref|ZP_06354046.2| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
 gi|291069833|gb|EFE07942.1| D-alanine--D-alanine ligase A [Citrobacter youngae ATCC 29220]
          Length = 375

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 149/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + ++ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 17  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKQGQWHVSDASNYLLNSDDPA 76

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  +
Sbjct: 77  HIALRPSATSLAQVPGKQEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L SA  MDK  +K+++   G+ + P I        N    + +  +  P  +K
Sbjct: 137 PFVGSDVLGSAACMDKDVTKRLLRDAGLNIAPFITLTRANRNNISFAEVESRLGLPLFVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+     + 
Sbjct: 197 PANQGSSVGVSKVTSEAQYNQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDRPQAST 254

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA I  +I  +++ +A  A+Q +GC G++R D 
Sbjct: 255 CGEIVLNSDFYAYDTKYIDDNGAKVVVPAAIAPEINDKIREIAIQAYQTLGCAGMARVDV 314

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 315 FLTAEND-VVINEINTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 361


>gi|184200683|ref|YP_001854890.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
 gi|229485959|sp|B2GFL1|DDL_KOCRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183580913|dbj|BAG29384.1| D-alanine--D-alanine ligase [Kocuria rhizophila DC2201]
          Length = 383

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 144/360 (40%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG SSE  +SL + ++   A++   + V  + +       L   +          
Sbjct: 19  IAVVFGGRSSEHSISLITARSVLRAIDRDRWDVVSVGISTDGAWFLCSQEELEALLDDQP 78

Query: 51  ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71
                                                   D  F +LHG FGEDG +Q +
Sbjct: 79  MAQLPVGVHRVSLPLQTGDSRLLIHDTSEHGAPLSRGRHIDAVFPLLHGPFGEDGTLQGM 138

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------L 123
           LEL ++PY   G+ ASA+ MDK   K    + G+ V P  +V+  T  +           
Sbjct: 139 LELADLPYVGCGVAASAIGMDKHFMKLAFQAAGLEVGPYTVVHDRTWRTDPLGVREAVAE 198

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP + GSS GI  + +   +   +  +    H  +L++E  +DG E+ C V+G
Sbjct: 199 LGFPVFVKPARAGSSFGITRVDEPSQLDAAIATAR--EHDLKLVVEAGIDGREIECAVLG 256

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQ 236
               D    ++P          Y                PA++P  +   ++R A  A  
Sbjct: 257 GHGTDEARASLPGEIEVHGHALYDFEAKYVESDGATLSCPARLPEHVIDTLRRDAVRAFH 316

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR DF       +V   EIN  PG TP+S++P M A +G  +  L+  ++  A
Sbjct: 317 AVDGEGLSRCDFFVTA-DERVLINEINTMPGFTPISMYPRMWAASGIDYSALIDELITLA 375


>gi|239991046|ref|ZP_04711710.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379]
 gi|291448047|ref|ZP_06587437.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
 gi|291350994|gb|EFE77898.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 391

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 97/365 (26%), Positives = 150/365 (41%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 25  VAVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRK 84

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 85  VPDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 144

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D           
Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIV 204

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP +GGSS+GI  +     +   + ++    H  + L+E  + G E+ 
Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDDLSGLDAAIEEAR--RHDPKFLVESLLRGREIE 262

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++T ++PA +  +   EVQRLA  A
Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSATGLVPAPLTGEQTAEVQRLAVAA 322

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 323 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQ 381

Query: 295 DASCL 299
            A   
Sbjct: 382 AALTR 386


>gi|89896436|ref|YP_519923.1| hypothetical protein DSY3690 [Desulfitobacterium hafniense Y51]
 gi|89335884|dbj|BAE85479.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 353

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 139/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E  VS+ S    A  L+   ++   I + ++    L              
Sbjct: 6   IAIIFGGCSEEHPVSVKSAGEVAKNLDLDKYEPFYIGITKNGVWQLCRYPEANWENGICP 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  DL F VLHG FGEDG VQ +LEL  IPY    I 
Sbjct: 66  SVILSPDRSLQGLLVLEQGQYKTIPLDLVFPVLHGKFGEDGAVQGLLELSGIPYVGCDIP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  + G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYIVAGNAGIATPKFRTVTAKEAIDAERLAYPVYVKPARSGSSFGVTKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +S   +  ++LIE+ V G E+ C + G+    +          + +   
Sbjct: 186 RQEELLSAVAIAS--QYDSKVLIEEAVIGTEVGCAIFGNDLDLMAGEVDQIRLSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +              ++PA I       VQ  A   ++A+GC+G++R D        +V 
Sbjct: 244 HQENEPEKGSENSTLIVPADISPQARSRVQETAKAIYRALGCKGLARVDMFL-KEDGEVI 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S FP M A AG  F E++  +V  A
Sbjct: 303 LNEVNTLPGMTSYSRFPRMMAAAGLPFAEVIDRLVSLA 340


>gi|238061902|ref|ZP_04606611.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237883713|gb|EEP72541.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 322

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 16/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 14  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L ++PY      AS ++ DK  +K V+   G+P    + +         
Sbjct: 74  GEDGSLRGVLDLCDVPYVGCDARASRVAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 133

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   S+P  +     + +    L+E+YV
Sbjct: 134 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAASLPAAM--VGCFAYDSTALVERYV 191

Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+++   V+     A        VP++  Y Y  +Y++  +T   PA++  ++   V R
Sbjct: 192 PGMDVAVSVVDLGEGAQALPAVEIVPRNGVYDYAARYTAGRTTWHAPARLDPEVADAVAR 251

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R ISR D + D    +   LE+NV PGMT  S+ P     AG  F  LL
Sbjct: 252 VAVAAHTALGLRDISRVDLIVDA-DGQPHVLEVNVSPGMTETSLLPLAVQAAGLDFGRLL 310

Query: 290 LWMVEDASCLR 300
             +V  A+  R
Sbjct: 311 GSLVSRAAARR 321


>gi|228474869|ref|ZP_04059598.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
 gi|228271101|gb|EEK12481.1| D-alanine--D-alanine ligase [Staphylococcus hominis SK119]
          Length = 356

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E +VS+ + +   +A+    + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTVEEL 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  HLEDISPGEITLLLKENGEGSKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP+  GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPVNLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           GI     +  +   + ++  ++    +        +E+                +    F
Sbjct: 186 GISKCNNEDELKKGIEEAFQFDRKLVIEQGIIAREVEVAVLGNDYPETTWPGEVIKDVQF 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY     +  +PA +  ++   ++ +A  A +A  C G+ R+DF       +++ 
Sbjct: 246 YDYKSKYKDGKISLQIPADLDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQIYI 304

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 305 NETNAMPGFTAFSMYPNLWENMGLSYSDLITKLIDLA 341


>gi|94987124|ref|YP_595057.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
 gi|166198488|sp|Q1MQJ1|DDL_LAWIP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94731373|emb|CAJ54736.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 302

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 90/296 (30%), Positives = 156/296 (52%), Gaps = 6/296 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGN 61
           +L GG SSEREVSL S +   SA+ + G  V+ +D       ++    K D+AF +LHG+
Sbjct: 5   LLAGGWSSEREVSLQSAELITSAMIEYGHTVTCLDPLYDFDKIVEVAEKQDVAFILLHGS 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DS 120
            GEDG++QA+LE +  PY  +    S L++ K  +K +    G+    S+ +        
Sbjct: 65  PGEDGILQALLERVGCPYQGASPAGSLLALHKAAAKALFRREGLLTPKSVFLPLKPEVTW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P  +K   GGSS+ + ++   + + + +      N G+++L+E+ + G E+TCG
Sbjct: 125 EPGLNYPIFVKSNIGGSSVNVHLVTNYEELFIAMEALF--NAGEEVLLEEAIIGQEVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +L    +   +  F+ Y  KY+   +  + PA +   + K +Q  A  AH  +  
Sbjct: 183 VIDDQALPPI-LIRSQGKFFDYYNKYAKNGAEEICPAPLEPHVLKHIQEYALRAHNTLNL 241

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G SR+DF+       +F LE+N  PGM+  S+ P  AA  G +F EL+  +++ A
Sbjct: 242 QGCSRADFIL-RDDELLFLLEVNTIPGMSATSLVPREAAAMGLTFPELVEKLIQLA 296


>gi|116072318|ref|ZP_01469585.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
 gi|116064840|gb|EAU70599.1| D-alanine--D-alanine ligase [Synechococcus sp. BL107]
          Length = 350

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 144/341 (42%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSAATVIHGLRSGENSQRYRVIPFYIDQEGRWWGETVANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                      ++ + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIDQSDPLKAKGFRGLPEGSETVEVWYPVLHGPNGEDGTVQGLFKLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS-----------ILVNRFTMDSQHLISPPYVIKPLKG 135
           SA+SMDK+  K   +  G+   P            I         +  +  P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFTGAGLSQVPYVGLNATDLNDSIRREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +     +   L  ++  +    +    +   +E            V      
Sbjct: 188 GSSVGISKVHNRYELEQGLDHAAQLDPRLVVEQGVHARELECAVLGGHQLRSSVVGEVRF 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D    
Sbjct: 248 DADWYDYTTKYTAGLSTTVIPAELPEGVAERVQKQALEACSALGVTGMARVDFFYDDTKH 307

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 308 QLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|262200426|ref|YP_003271634.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
 gi|262083773|gb|ACY19741.1| D-alanine/D-alanine ligase [Gordonia bronchialis DSM 43247]
          Length = 358

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 154/338 (45%), Gaps = 45/338 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            VL GG+S+E +VS  +     +A +   +++  I + +    +                
Sbjct: 9   VVLFGGVSAEHDVSRVTAAHVLAAADRGKYELVPIGIAKDGTWLRNDKAIAALTDGTPLP 68

Query: 46  ------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                              A   P +   +LHG  GEDG +Q +LEL ++PY  +G+L+S
Sbjct: 69  DALDVAGTVVDPLTELAAHAADTPTVVLPLLHGPHGEDGTIQGMLELFKLPYVGAGVLSS 128

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-------ISPPYVIKPLKGGSSLG 140
           AL MDK  +K V +  G+P C  +       D   +       +  P  +KP   GSS+G
Sbjct: 129 ALCMDKAMAKVVAAQAGIPQCRWLEFRDGVDDPNTIVADAVGQLGLPIFVKPANLGSSVG 188

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198
           I     +  +   +  +    + + +++E+ V G E+   V+GD + + +      P S+
Sbjct: 189 ITKAHDEAELDTAINVAL--RYDNVVILEEAVTGREVEVAVLGDTAPETSVPGEIEPGSE 246

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY YE KY +  +  V+PA +  +   +V+ LA     A+ C G++R DF ++   R   
Sbjct: 247 FYDYEDKYITGAAKLVIPAPLSEEATAQVRELASKTFTAMRCTGMARVDFFYEESGRGWL 306

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG TP S++P++    G S+ +L+  +V  A
Sbjct: 307 LNEVNTIPGFTPGSMYPKLWEATGISYPDLIDQLVTFA 344


>gi|166710205|ref|ZP_02241412.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 367

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  +R T            +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V +   +       + +  +  ++L+E  V G E+ C V+G+A    + 
Sbjct: 186 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 244 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 350


>gi|289664973|ref|ZP_06486554.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vasculorum NCPPB702]
          Length = 367

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T            +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++           + + ++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAA--LALALDYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   ++      V+PA I     + +Q +A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYISEHGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350


>gi|330465894|ref|YP_004403637.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328808865|gb|AEB43037.1| D-alanine/D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 388

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 103/360 (28%), Positives = 167/360 (46%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + VL GG S+E EVS +S    A AL   G++V  + V R   L L              
Sbjct: 20  IGVLFGGPSAEHEVSCASALGVARALVGGGYQVVALGVTRQGRLRLVPEETLAAHIDGTA 79

Query: 47  -------------------AHLKP------------------DLAFNVLHGNFGEDGLVQ 69
                              A  +P                  D+ F VLHG +GEDG+VQ
Sbjct: 80  AARAIDDRLSVTGSAVELRAGERPGTALVTGAESPGEVHAVLDVVFPVLHGPYGEDGVVQ 139

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ 123
            +LE L +PY   GILASA+ MDK+  K+ + + GVP+ P +  +  T  +         
Sbjct: 140 GLLESLGVPYVGCGILASAVGMDKVAMKRALRAEGVPITPHVWFDEHTYRTTEDVEKLVV 199

Query: 124 -ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV- 181
            +  P  +KP + GSS+GI  + +D  +   + ++    H + +++EQ V G EL CGV 
Sbjct: 200 GLRRPLFVKPARMGSSIGISRVTEDDDLAAAVEEAL--RHDNLVVVEQGVTGRELECGVL 257

Query: 182 -MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                             ++ Y+ KY       V+PA +P ++ + ++ L+  A  AIG 
Sbjct: 258 GGTRPEASTVGEVRVTGGWFDYQQKYFGDADPMVVPAVLPDEVTERIRDLSLRAFAAIGG 317

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DFL+D  + +++  E+N  PG T  S++P++ A AG  +++++  +V  A   R
Sbjct: 318 WGLARVDFLYDESAGELYVNELNTMPGFTAHSMYPKVWAAAGVGYQQIVDRLVALAVERR 377


>gi|304560494|gb|ADM43158.1| D-alanine--D-alanine ligase [Edwardsiella tarda FL6-60]
          Length = 367

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L              
Sbjct: 6   VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 65

Query: 47  -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                    A  +P    D+ F ++HG  GEDG +Q +L++L +
Sbjct: 66  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P +        N      +  +     +K
Sbjct: 126 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +       ++++E+ V G E+ C ++G+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNADEYHRAIADAL--RFDHKVIVERGVVGREIECAILGNEAAQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +++       PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 244 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  ++ L+  ++E A
Sbjct: 304 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 350


>gi|269140712|ref|YP_003297413.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
 gi|267986373|gb|ACY86202.1| D-alanylalanine synthetase [Edwardsiella tarda EIB202]
          Length = 390

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 79/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L              
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCGGQDYLNHAQDPQ 88

Query: 47  -------------------------AHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                    A  +P    D+ F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGATQGQLIDSASGEPLPSLDVIFPIVHGTQGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P +        N      +  +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQANYDYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +       ++++E+ V G E+ C ++G+ +   + 
Sbjct: 209 PANQGSSVGVSKVRNADEYHRAIADAL--RFDHKVIVERGVVGREIECAILGNEAAQASV 266

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +++       PA +  +  + V+  A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQGAQVVVPAAMAPEASERVRHTALRAFQALECRGLARVDV 326

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  ++ L+  ++E A
Sbjct: 327 FLTE-DNEVIINEINTLPGFTNISMYPKLWQASGIGYQALITRLIELA 373


>gi|310640274|ref|YP_003945032.1| d-alanine--d-alanine ligase b [Paenibacillus polymyxa SC2]
 gi|309245224|gb|ADO54791.1| D-alanine--D-alanine ligase B [Paenibacillus polymyxa SC2]
          Length = 362

 Score =  166 bits (419), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 147/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + ++ GG S E EVSL +  A  +A     +++    + ++                   
Sbjct: 8   VGLVYGGKSGEHEVSLQTAYAVMNAFNYEKYEIIPFYITKAGDWRRGTLLNAPLTTVEQL 67

Query: 45  VLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            L H +                    D+ F +LHG FGEDG +Q + E+ ++PY  +G+L
Sbjct: 68  KLEHAEGGTKAALDTLFGKLYGEQTLDVLFPLLHGTFGEDGTIQGLFEMADMPYVGAGVL 127

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGG 136
           ASA  MDK   K++    G+P       N             + +  +  P  +KP   G
Sbjct: 128 ASAAGMDKGVMKKLFEHAGLPQVKYCYFNSTQWAQTGHDLVRNIETELGYPCFVKPANLG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AV 194
           SS+GI      + +   +  +       ++++E+YVD  E+   V+G+     +     V
Sbjct: 188 SSVGISKASNREELEKAVDLAL--QFDLKVIVEEYVDAREIEVSVLGNDEPIASVPGEIV 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             SD+Y Y  KY+   S  ++PA +  ++   ++  A  A +A+   GISR+DF      
Sbjct: 246 SSSDYYDYAAKYTDGQSEMLIPAPLDEEVADRIRESALQAFRALEGCGISRADFFVRRSD 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +   E+N  PG TP S++P +    G S+  LL  M+  A
Sbjct: 306 GHILINEVNTMPGFTPFSMYPLLWRETGVSYVNLLDRMIALA 347


>gi|167752136|ref|ZP_02424263.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
 gi|167660377|gb|EDS04507.1| hypothetical protein ALIPUT_00378 [Alistipes putredinis DSM 17216]
          Length = 331

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 100/322 (31%), Positives = 163/322 (50%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSERE++L S    ASAL+ A + ++ ID+                    D 
Sbjct: 6   IALMAGGDSSEREIALQSAAQIASALDPAKYDITLIDLHGRDWHYTSPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H   D A  ++HG  GE+G +Q  L+++ IPY+   + +S ++ DK+ +K+ V
Sbjct: 66  SITIDGEHKAFDYALILIHGTPGENGRLQGYLDMMGIPYSSCSMTSSVVTFDKITTKRTV 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+P+       R +      I      P  +KP   GSS G+  +K +  I   + +
Sbjct: 126 AEFGIPLARGFFFGRDSRIDPKEIVRTLGLPVFVKPNASGSSFGVTKVKSEADILPAVAE 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      D++LIE+ + G E+ CG+    G   +      V K +F+ YE KY++  S  
Sbjct: 186 AF--TESDEILIEECIQGREMGCGMLIAKGREYIFPITEIVSKKEFFDYEAKYTAGCSDE 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA I  +I  E+ RL  LA++A  CRG+ R DF+  P   K + +EIN  PGM+  SI
Sbjct: 244 ITPADIAPEIKAELNRLTALAYKACRCRGVVRVDFIVTPE-GKPYLIEINSIPGMSGGSI 302

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG +  EL   ++ED
Sbjct: 303 VPKQVREAGMTLGELYDLIIED 324


>gi|260886504|ref|ZP_05897767.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|330839652|ref|YP_004414232.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|260863647|gb|EEX78147.1| D-alanine--D-alanine ligase [Selenomonas sputigena ATCC 35185]
 gi|329747416|gb|AEC00773.1| D-alanine/D-alanine ligase [Selenomonas sputigena ATCC 35185]
          Length = 312

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 110/306 (35%), Positives = 169/306 (55%), Gaps = 13/306 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           + V+MGG SSE EVS  +G A  SALE  G+ V  +++D       +      + FN LH
Sbjct: 6   IVVVMGGPSSEAEVSRRTGAAIVSALESKGYAVEGMELDPPHFAEAIRKSDCAIVFNALH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG++Q  L++L IPYT SG+LA+A++MDK+ SK+V    G+    S   +RF  D
Sbjct: 66  GRYGEDGVLQGTLDMLGIPYTGSGVLAAAVTMDKVMSKRVFLGAGISTPRSETFHRFEFD 125

Query: 120 SQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++         S P VIK    GSS+G+ +   ++   L+     ++ + +++L+E+++ 
Sbjct: 126 AELPSRIRKAFSLPVVIKASSQGSSIGVAI--VEKEEELEAALKDAFRYDEEVLVEEFIR 183

Query: 174 GIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G ELT  V     +A           S  Y Y  KY+   STH++PA+IPLD+ + VQ+L
Sbjct: 184 GKELTVAVWGDAREAQAFPVIEITTVSGRYDYASKYTKGASTHIIPARIPLDVTERVQQL 243

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A +A GCRG++R+D +        + +EIN  PGMT  S+ P+     G  F EL  
Sbjct: 244 AVDAFRACGCRGVARADMML-GEDMTPYVIEINSMPGMTETSLVPDAGRAMGVEFPELCE 302

Query: 291 WMVEDA 296
            ++E A
Sbjct: 303 RILEMA 308


>gi|309385870|gb|ADO66795.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium]
          Length = 359

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 22  VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 81

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 82  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 141

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 142 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 201

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++  V          Y     
Sbjct: 202 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 259

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 260 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 318

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +  EL+  ++  A
Sbjct: 319 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 356


>gi|257880772|ref|ZP_05660425.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257883396|ref|ZP_05663049.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|293384649|ref|ZP_06630508.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|293387041|ref|ZP_06631608.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|312907833|ref|ZP_07766821.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312909718|ref|ZP_07768569.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|314943761|ref|ZP_07850498.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314949442|ref|ZP_07852781.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314996820|ref|ZP_07861831.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|320152792|ref|YP_004172615.1| VanA [Enterococcus faecium]
 gi|257815000|gb|EEV43758.1| D-ala D-ala ligase [Enterococcus faecium 1,230,933]
 gi|257819054|gb|EEV46382.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,502]
 gi|281335159|gb|ADA62243.1| Vancomycin Teicoplanin A-type resistance protein VanA /
           D-alanine--D-alanine ligase [Enterococcus faecium]
 gi|291078043|gb|EFE15407.1| D-alanine--D-lactate ligase [Enterococcus faecalis R712]
 gi|291083526|gb|EFE20489.1| D-alanine--D-lactate ligase [Enterococcus faecalis S613]
 gi|310626165|gb|EFQ09448.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|311289972|gb|EFQ68528.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|313589048|gb|EFR67893.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313597583|gb|EFR76428.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313644171|gb|EFS08751.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|319739744|gb|ADV60062.1| VanA [Enterococcus faecium]
          Length = 343

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 139/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++             Y     
Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340


>gi|314935966|ref|ZP_07843316.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
 gi|313655972|gb|EFS19714.1| D-alanine--D-alanine ligase [Staphylococcus hominis subsp. hominis
           C80]
          Length = 356

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 139/337 (41%), Gaps = 42/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG S+E +VS+ + +   +A+    + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSILTAQNVLNAINKDKYLVDIIYITNDGQWKKKENITKNIKTIEEL 65

Query: 50  ---------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                K D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  HLEDISPGEITLLLKENGEGNKYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           GI     +  +   + ++  ++    +        +E+                +    F
Sbjct: 186 GISKCNNEDELKKGIEEAFQFDRKLVIEQGVIAREVEVAVLGNDYPETTWPGEVIKDVQF 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY     +  +PA++  ++   ++ +A  A +A  C G+ R+DF       +++ 
Sbjct: 246 YDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQIYI 304

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 305 NETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341


>gi|52078991|ref|YP_077782.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|52784363|ref|YP_090192.1| D-alanyl-alanine synthetase A [Bacillus licheniformis ATCC 14580]
 gi|81667017|sp|Q65N65|DDL_BACLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52002202|gb|AAU22144.1| D-alanyl-D-alanine ligase A [Bacillus licheniformis ATCC 14580]
 gi|52346865|gb|AAU39499.1| Ddl [Bacillus licheniformis ATCC 14580]
          Length = 361

 Score =  166 bits (419), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 145/345 (42%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            ++ GG S+E  VSL +  A   AL+   F +  I +      V                
Sbjct: 6   GLVYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQ 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F +LHG  GEDG +Q +LELL +PY  +
Sbjct: 66  FEQTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGN 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPL 133
           G+LAS+  MDK+  K + +  G+     +   + T            +  +  P  +KP 
Sbjct: 126 GVLASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTE 191
             GSS+GI   +  + +      +    +  ++++E+ V G E+        +    V  
Sbjct: 186 NLGSSVGISKCRSREELDQAFELAF--QYDRKIVVEEGVIGREIELGVLGNDEPVCSVAG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              PK DFY Y+ KY   ++  ++PA +  D Y+ ++ +A  A QAI   G+ R+DF   
Sbjct: 244 EIAPKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +V   E+N  PG TP S+FP +   +G  + EL+  +V  A
Sbjct: 304 NE-GRVLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 347


>gi|332160674|ref|YP_004297251.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|325664904|gb|ADZ41548.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 366

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I        N         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350


>gi|168465461|ref|ZP_02699343.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
 gi|195631722|gb|EDX50242.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Newport str. SL317]
          Length = 364

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 78/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|33416270|ref|NP_878016.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|121633839|ref|YP_976077.1| VanA protein [Enterococcus faecium]
 gi|124112006|ref|YP_001019035.1| VanA protein [Enterococcus faecium]
 gi|190606511|ref|YP_001974796.1| VanA protein [Enterococcus faecium]
 gi|197103117|ref|YP_002128399.1| D-alanine--D-lactate ligase [Enterococcus faecium]
 gi|256965577|ref|ZP_05569748.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257891272|ref|ZP_05670925.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|293567293|ref|ZP_06678646.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|294617750|ref|ZP_06697368.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|305678707|ref|YP_003864126.1| VanA [Enterococcus faecalis]
 gi|313247847|ref|YP_004033009.1| vanomycin resistance [Enterococcus faecalis]
 gi|137441|sp|P25051|VANA_ENTFC RecName: Full=Vancomycin/teicoplanin A-type resistance protein
           VanA; AltName: Full=D-alanine--D-lactate ligase;
           AltName: Full=VanA ligase
 gi|21886742|gb|AAM77885.1|AF516335_5 D-Ala-D-Lac ligase [Enterococcus faecium]
 gi|43336|emb|CAA40215.1| VANA ligase [Enterococcus faecium]
 gi|155042|gb|AAA65956.1| vanA [Enterococcus faecium]
 gi|33390954|gb|AAQ17160.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Staphylococcus aureus]
 gi|110556110|dbj|BAE98129.1| vanA [Enterococcus faecalis]
 gi|121490898|emb|CAL36534.1| VanA protein [Enterococcus faecium]
 gi|124012108|emb|CAL90940.1| VanA protein [Enterococcus faecium]
 gi|186886505|gb|ACC93633.1| VanA [Enterococcus faecium]
 gi|190350281|emb|CAP62631.1| VanA protein [Enterococcus faecium]
 gi|196158939|emb|CAP70014.1| VanA protein [Enterococcus faecium]
 gi|256956073|gb|EEU72705.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecalis HIP11704]
 gi|257827632|gb|EEV54258.1| vancomycin/teicoplanin A-type resistance protein vanA [Enterococcus
           faecium 1,231,410]
 gi|283481160|emb|CAZ67071.1| VanA protein [Enterococcus faecium]
 gi|291590001|gb|EFF21796.1| D-alanine-D-lactate ligase VanA [Enterococcus faecium E1071]
 gi|291595996|gb|EFF27271.1| vancomycin/teicoplanin A-type resistance protein VanA [Enterococcus
           faecium E1679]
 gi|304324958|gb|ADM24838.1| VanA [Enterococcus faecalis]
 gi|304325000|gb|ADM24879.1| VanA [Enterococcus faecalis]
 gi|304325042|gb|ADM24920.1| VanA [Enterococcus faecalis]
 gi|312837014|dbj|BAJ34900.1| vanomycin resistance [Enterococcus faecalis]
          Length = 343

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 140/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S    A+ +    ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ LHG  GEDG +Q + EL  IP+    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G+      ++N+         + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYIVAKNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G+++  V          Y     
Sbjct: 186 SADELDYAIESARQ--YDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +  +            +PA +  +    +Q  A   ++A+GCRG++R D      + ++ 
Sbjct: 244 HQEVEPEKGSENAVITVPADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGIALPELIDRLIVLA 340


>gi|34497927|ref|NP_902142.1| D-alanyl-alanine synthetase A [Chromobacterium violaceum ATCC
           12472]
 gi|39930968|sp|Q7NV72|DDLA_CHRVO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|34103782|gb|AAQ60143.1| D-alanine-D-alanine ligase [Chromobacterium violaceum ATCC 12472]
          Length = 366

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVSL S +    A++   F+VS I VD+      +             
Sbjct: 6   VGLIFGGQSSEHEVSLQSARNILQAIDGERFEVSLIGVDKQGRWHASQASNFLLNADDPG 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+AF ++HG  GEDG +Q +L +  I
Sbjct: 66  RIALRESGENLALVPGECSGQLQTAANAHPLAQIDVAFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIK 131
           P+  +G+L SA+ MDK  +K+++   G+ V P + + R       L      +  P  +K
Sbjct: 126 PFVGAGVLGSAVCMDKDVAKRLLRDAGLKVAPFVSLTRSKAAGADLSAIVEQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K++  +   L ++    +  ++L+EQ V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKREADLRAALDEAF--RYDHKVLVEQAVIGREIECAVLGNERPRASG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      LN        PA IP +  + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVLSDEFYAYDTKYLNEDGARVAVPADIPDEACQRIRGIAIEAFQALECSGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   E+N  PG T +S++P++   AG S+REL+  ++E A
Sbjct: 304 FLTP-DGEVVINELNTLPGFTNISMYPKLWQAAGMSYRELITALIELA 350


>gi|254424655|ref|ZP_05038373.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
 gi|196192144|gb|EDX87108.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Synechococcus sp. PCC 7335]
          Length = 364

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 146/349 (41%), Gaps = 54/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S  A A AL        + V  I + +            VLA 
Sbjct: 8   VGLVFGGRSGEHEVSIRSAGAIAQALSIDENQTKYAVVPILIHKDGSWESGQTAQQVLAS 67

Query: 49  LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
            KP                              D+ F V+HG  GEDG +Q + E+LE+P
Sbjct: 68  GKPAMQDEGPIGELPSAAKPIKRLPDLSALGHIDIWFPVIHGPNGEDGTLQGLFEVLEVP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------P 126
           Y   G+L S+L MDK+ SK   +  G+P      V+R  + S   I              
Sbjct: 128 YVGCGVLGSSLGMDKLASKSAFAQAGLPQVNYRGVSRAEIYSNPCIFPKLCDGIDEALGY 187

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI      Q +   L  ++S++    +        IE +     +  
Sbjct: 188 PCFVKPANLGSSVGISKATNRQELETALDLAASYDRRVIVETGVVAREIECSILGNDNPK 247

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
             V       +DFY Y  KY+   +  ++P+ +   +   +Q +A  A QAI   G++R 
Sbjct: 248 ASVLGETRFSTDFYDYAAKYTEGGAELLIPSPVSDQVRDRIQEMAIAAFQAIDGSGLARV 307

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           DF +   + ++   EIN  PG T  S++P M   +G  F +L+  +++ 
Sbjct: 308 DFFYIEKTDQILINEINTMPGFTATSMYPMMWEASGIKFSDLVDKLIQL 356


>gi|302558175|ref|ZP_07310517.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
 gi|302475793|gb|EFL38886.1| D-alanine-D-alanine ligase [Streptomyces griseoflavus Tu4000]
          Length = 385

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 151/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I + +     L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRTRYDVLPIGITQDGRWALTADEPERMAISDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDQLAESTEGGVVLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYLVIRPREWERDESAARRKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +    ++   + ++    H  + L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSALDEAIAEAR--RHDPKFLVEAALRGREIE 256

Query: 179 CGVMGDASLD----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV+            EI  P +  Y         ++  ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASLPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTDEETAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P+M    G S+ EL+  +V 
Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPQMWQATGVSYPELVDLLVR 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|283850409|ref|ZP_06367698.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
 gi|283574435|gb|EFC22406.1| D-alanine/D-alanine ligase [Desulfovibrio sp. FW1012B]
          Length = 304

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 106/302 (35%), Positives = 153/302 (50%), Gaps = 8/302 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHGN 61
           ++ GG SSEREVSLS       AL   G KV   D+     G V A    D AF  LHG 
Sbjct: 5   LVAGGWSSEREVSLSGAAQIEKALLALGHKVVPFDLSHDFPGFVAAAQACDFAFLNLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDS 120
            GEDGL QA+L+   +PY  SG   S L+++K  SKQ+    G+    S           
Sbjct: 65  PGEDGLPQALLDTAGVPYQGSGPAGSFLALNKAASKQLFRQAGLATPRSAFLPTPPGDGF 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                PP+ +KP  GGSS+ + +++    +P  L ++     GD  L+E+ + G ELTC 
Sbjct: 125 VPDFGPPWFVKPTSGGSSVSMTLVRDPADLPEALARAF--ASGDTALVEEGLAGPELTCA 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+GD +L    I     +F+ Y  KY    +  + PA +P  +  E+ R++  AH+A+G 
Sbjct: 183 VLGDEALPPILIRPKAGEFFDYASKYELDAAEEICPAPVPDTLVAELGRISLAAHKALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298
            G SR+DF+          LE+N  PGMT  S+ P+ A  AG SF +L+  ++E   A C
Sbjct: 243 SGYSRADFIHTESG--PMLLEVNTLPGMTRTSLLPKSAQAAGLSFPDLIARLMELGLARC 300

Query: 299 LR 300
            +
Sbjct: 301 GK 302


>gi|289669898|ref|ZP_06490973.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 367

 Score =  165 bits (418), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 152/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEAVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLQPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T            +  P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAHADVDGLIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++           + + ++  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRTADQFAAA--LALALDYDHKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   ++      V+PA I     + +Q +A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYETKYISEYGAEIVIPADIDAQAEQRIQHIAVQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITRLIELA 350


>gi|327475201|gb|AEA77195.1| D-alanyl-alanine synthetase A [Bacillus aquimaris]
          Length = 357

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E  VSL + KA   AL+   F +  I +      +                
Sbjct: 6   CLLYGGKSAEHNVSLQTAKAVIGALDLNKFDIHPIFISTEGEWMKGPQLNAPVKDVKELQ 65

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+ F +LHG  GEDG VQ +LELL +PY  +G+LA
Sbjct: 66  FNNGEEISPNALSTSISSSEKGEGYDMIFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLA 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGS 137
           S+  MDK+  K + +  G+P        R T            +  I  P  +KP   GS
Sbjct: 126 SSAGMDKVIMKNLFAQAGIPQVNYTWFIRSTWKANEEQAYESVEKEIGYPCFVKPANLGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI        +     ++  ++    +        IE+           V    VPK+
Sbjct: 186 SVGISKCSSRDELAKAFQEAFQFDRKIIIEEGVKAREIEIGVLGNDQPQCSVPGEIVPKT 245

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           DFY Y+ KY   ++  ++PA++  D+  +++ +A  + +A+ C G+ R+DF       ++
Sbjct: 246 DFYDYKSKYEDGDTALIIPAEVEEDVADKMKEIAIQSFKALDCSGLVRADFFLTE-DGRI 304

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +  E+N  PG TP S+FP +  + G  +  L+  +V+ 
Sbjct: 305 YMNEVNTMPGFTPYSMFPLLWKHTGVDYPTLIGKLVDL 342


>gi|325289877|ref|YP_004266058.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324965278|gb|ADY56057.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 360

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 93/345 (26%), Positives = 149/345 (43%), Gaps = 56/345 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--------------- 47
           V+ GG S E EVSL S  +   AL+   +++  + + +                      
Sbjct: 8   VIFGGESGEHEVSLVSAASVIQALDKEKYEILTVGITKKGQWYWGIDPQTWKLNNGTVSS 67

Query: 48  --------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                       K DL F VLHG  GEDG +Q + E+  +PY  
Sbjct: 68  HDVQVTLVTDPANPRFIPVSGNTLPGDGKFDLIFPVLHGPKGEDGTIQGLFEIAGVPYVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKP 132
           SG+L  AL MDK R K V +  G+P+ P I V +  +D+            +S P  +KP
Sbjct: 128 SGVLGGALGMDKDRMKAVFAQAGLPIVPHITVLKNQIDNDPDSIRTKVMTELSFPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVT 190
              GSS+GI  + ++  +   L  ++   + D+++IEQ V   E+             V 
Sbjct: 188 ANLGSSVGITKVSRESDLGQALKLAA--AYDDKVVIEQGVKAREIELAVLGNETPQATVP 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +P  +FY YE K    +S  ++PA++      ++Q  A    QA+   G+ R DF  
Sbjct: 246 GEIIPCKEFYDYEAK-YIDDSKLIIPAQLNKKTVNKLQEYAVTVFQAVDASGLGRVDFFV 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              + ++F  EIN  PG T +S++P++    G S+ ELL  ++  
Sbjct: 305 T-DTEEIFVNEINTLPGFTNISMYPKLWEATGVSYPELLNRLIRL 348


>gi|291540930|emb|CBL14041.1| D-alanine--D-alanine ligase [Roseburia intestinalis XB6B4]
          Length = 351

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 100/345 (28%), Positives = 156/345 (45%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+ER+VS  +G   A AL + G +V  +D                       
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 38  --------VDRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAIL 72
                   +   +  V A  K                  D+ F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +           I  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGIQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W   + L++E+YV G E + GV+   +L  
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKAL-P 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 240 IIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D     ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|326626726|gb|EGE33069.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 9]
          Length = 370

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|205351693|ref|YP_002225494.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|207855862|ref|YP_002242513.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
 gi|205271474|emb|CAR36291.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Gallinarum str. 287/91]
 gi|206707665|emb|CAR31949.1| D-alanine:D-alanine ligase A [Salmonella enterica subsp. enterica
           serovar Enteritidis str. P125109]
          Length = 364

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDIAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|308177218|ref|YP_003916624.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
 gi|307744681|emb|CBT75653.1| D-alanine--D-alanine ligase [Arthrobacter arilaitensis Re117]
          Length = 370

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 137/357 (38%), Gaps = 65/357 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           +L GG SSE  VS  +      A++   F++  + + R  G  L    P           
Sbjct: 10  LLFGGRSSEHSVSCVTAAGVMHAIDRERFEIVPVGITRDGGWTLLDEDPEGWALNTGKLP 69

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F +LHG FGEDG +Q +LE+  +
Sbjct: 70  EISSVDHPVHLSTDAQKTSLLSYSDSAVADLGEIDVVFPLLHGPFGEDGSIQGMLEMAGV 129

Query: 78  PYTHSGILASALSMDKMRS--------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
            Y  SGI ASA+ MDK             V     +     +  +   M     +  P  
Sbjct: 130 SYVGSGIAASAMGMDKHYMKVVFEGAGFNVGPYEVITNKQWLRDSEAAMKRCDNLQYPLF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS+GI  +     +   +  +       +++IEQ + G E+ CGV+       
Sbjct: 190 VKPARAGSSVGITKVDDPSELRAAIEIAR--AEDPKVIIEQGIVGREIECGVLEGRGSGP 247

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  ++P     +  L                    PA +  +   E++ LA  A  AI  
Sbjct: 248 SRASLPGEIAVADNLHTFYDFEAKYVDGAAAELSCPANLSDEATLEIRELAVKAFDAIDA 307

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G+SR DF + P        EIN  PG TP S++P+M A  G  +REL+  ++  A+
Sbjct: 308 EGLSRVDFFYTPE-GDWIINEINTMPGFTPSSMYPQMWAKTGIEYRELIDELIALAT 363


>gi|329924576|ref|ZP_08279621.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
 gi|328940586|gb|EGG36907.1| D-ala D-ala ligase N-terminal domain protein [Paenibacillus sp.
           HGF5]
          Length = 364

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 93/342 (27%), Positives = 155/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E EVSLS+  A  +A +   +++    + +     +              
Sbjct: 8   VGLVYGGKSGEHEVSLSTAFAVMNAFDFDKYEMVPFYISKQGTWRIGSKMSAPFARQEEL 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                  +   D+ F +LHG FGEDG +Q + E+ +IPY  +G+
Sbjct: 68  KLAEGEGTQTALNAVFSRLYGEENQAVDIMFPLLHGTFGEDGTIQGLFEMADIPYVGTGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+P C     NR            + +  +  P  +KP   
Sbjct: 128 LASAAGMDKVVMKKLFAQAGLPQCEYCYFNRTQWERGQHEVLKNIEDKLGFPSFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193
           GSS+GI   K  + +   +  +      D++++E++VD  E+   V+G+     +     
Sbjct: 188 GSSVGISKAKNREQLKAAIESAL--RFDDKIIVEEFVDAREVEVSVLGNDEPMASVPGEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V  S++Y Y  KY+   S   +PA+I  D    ++ LA  A +AI   GI+R+DF     
Sbjct: 246 VSSSEYYDYAAKYTDGQSQMQIPAEIDPDTADRLRDLAIAAFKAIEGGGITRADFFVRRS 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +   E+N  PG TP S++P +    G S+RELL  M+E 
Sbjct: 306 DNAILINEVNTMPGFTPFSMYPLLWRETGVSYRELLDRMIEL 347


>gi|238759710|ref|ZP_04620869.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238702036|gb|EEP94594.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 361

 Score =  165 bits (418), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 147/348 (42%), Gaps = 55/348 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51
           + GG S+E EVSL S K    A++   F V+ + +D+            +L    P    
Sbjct: 2   IFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGQWHVNDVSNYLLNEENPALIS 61

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F ++HG  GEDG +Q +L ++ IP+ 
Sbjct: 62  LNHSNKNVALIPGQQRQQLIAADNGSALAQLDVIFPIVHGTLGEDGSLQGLLRMVNIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLK 134
            +G++ SA+SMDK  +K+++   G+ V P I                  +  P  IKP  
Sbjct: 122 GAGVVGSAVSMDKDMTKRLLRDAGLNVAPFITLTRTNKNKYRFEAITAKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+  ++ +      +  +   +   ++L+E  + G EL C V+G+     +    
Sbjct: 182 QGSSVGVSKVRNEDEYHQAIALAF--DFDHKVLVESAIVGRELECAVLGNDDPQASVCGE 239

Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  Y  +   +N      V+PA I       ++ +A  A +A+ C G++R D    
Sbjct: 240 VVISDEFYSYETKYINETGAQVVIPAVIDNAASLRIRTVALEAFRALECLGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           P   +V   E+N  PG T +S++P++    G S+ +L+  ++E A   
Sbjct: 300 P-DNEVIVNEVNTLPGFTNISMYPKLWRATGVSYTQLITTLIELALAR 346


>gi|317153980|ref|YP_004122028.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944231|gb|ADU63282.1| D-alanine/D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 304

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 103/298 (34%), Positives = 153/298 (51%), Gaps = 6/298 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           + ++ GG S EREVSLS  K   +ALE+ G +V+  D  +    ++   +  D AF  LH
Sbjct: 3   VILIAGGWSDEREVSLSGAKKIRTALEELGHRVTFFDPAQDFRHLVRTAREADFAFINLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDGL+QA+L+    PY  +G  AS L++DK  SK+V  + G+   P   +      
Sbjct: 63  GTPGEDGLIQAMLDKAGCPYQGAGAAASYLALDKGASKEVFETLGIDTPPWQFITPTQGA 122

Query: 120 SQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              L +  P  +KP KGGSSLG+ +++     P  L +  +       L+E ++ G+ELT
Sbjct: 123 DTPLALPLPVFVKPNKGGSSLGMSLVRTAGEFPSALSKVFAMC--QSALVEIFIPGVELT 180

Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           C V+GD  L +        + F+ YE KY++  +  V PA +   + + VQ     AH A
Sbjct: 181 CAVLGDRPLPLIMITPKAGAPFFDYENKYAADGAEEVCPAPVSDAVTRLVQERMLAAHNA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G  G SR DF+        + LEIN  PGMTP S+ P  A   G SF  L+  ++  
Sbjct: 241 LGLTGYSRGDFIL-AADGTPYLLEINTLPGMTPTSLLPRAAGQVGLSFAALISELIRL 297


>gi|225620780|ref|YP_002722038.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
 gi|225215600|gb|ACN84334.1| D-alanine--D-alanine ligase [Brachyspira hyodysenteriae WA1]
          Length = 328

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 95/309 (30%), Positives = 152/309 (49%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDRS--VGLVLAHLKPDLAF 55
           +AVL GG+SSEREVSL SG+    AL   ++       IDV  S  +   L     +  +
Sbjct: 20  IAVLHGGLSSEREVSLRSGQNVYKALTSFDEIKDNCILIDVKDSYELVKKLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---- 111
           N+LHG  GEDG VQ +LE L I YT   IL SA+ M+K+ +K++  S  V     +    
Sbjct: 80  NILHGTSGEDGTVQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTADFMLLKD 139

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              + +     S    + P ++KP+  GSS+G+ +IK        +         +   +
Sbjct: 140 VKEINDSGIKGSALTFNFPLILKPISDGSSVGVHLIKTKTEFESVVSSIKD---SENYFL 196

Query: 169 EQYVDGIELTCGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           E Y+ G E+T G+      +  +        K++ Y YE KY+   +   +PAK+  +I 
Sbjct: 197 EPYIKGKEITVGLVKQDDENIYVFPILGINSKNEIYDYEAKYTPGKTEMEMPAKLSKEIE 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +V      A++ +GC G+SR D +      +V+ +E+N Q GMT  S  P MA +    
Sbjct: 257 NKVIETCKKAYKVLGCSGLSRIDAIV-GNDNEVYLMEVNTQGGMTNTSDIPAMAKHINLD 315

Query: 285 FRELLLWMV 293
           F +L+L+++
Sbjct: 316 FNDLVLYIL 324


>gi|332670956|ref|YP_004453964.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332339994|gb|AEE46577.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 390

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 93/362 (25%), Positives = 145/362 (40%), Gaps = 66/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + VL GG S E  +S ++      AL+   + V  + +  +   VLA   PD        
Sbjct: 27  VMVLFGGRSGEHAISCATAGGVLRALDRDRYDVVAVGITPTGRWVLAEDDPDRWAIRDGR 86

Query: 53  --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74
                                                 + F +LHG FGEDG +Q +LEL
Sbjct: 87  LPQVEDTAAHVLLPQATDDRDVQVLEPGTLPRTLGAVDVVFPLLHGPFGEDGTLQGMLEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--------ILVNRFTMDSQHLISP 126
            ++ Y  +G+LASA+ MDK   K V++  G+PV P                      +  
Sbjct: 147 ADVRYVGAGVLASAVGMDKHMMKLVLAGHGLPVGPFTVILPGELERDPDEVARRVEKLGL 206

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSSLG  + + D    L     ++  H  ++++E  V G E+ CGV+G   
Sbjct: 207 PLFVKPARAGSSLG--ITRVDDLADLPAALDAARAHDPKVVVEAAVVGREIECGVLGGRD 264

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
                 ++P     +                       PA +P D+  +V+ +A    +A
Sbjct: 265 GQRARASLPGEIVVTDPRHTFYDFEAKYLDEAGVTLACPADLPADVVAQVRDVAVRTFEA 324

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           IGC GI+R D    P   +V   EIN  PG TP S++P M    G  + +L+  +V+ A 
Sbjct: 325 IGCEGIARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWEATGLPYPQLVDELVQLAL 383

Query: 298 CL 299
             
Sbjct: 384 AR 385


>gi|326622081|gb|EGE28426.1| D-alanylalanine synthetase [Salmonella enterica subsp. enterica
           serovar Dublin str. 3246]
          Length = 370

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 12  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 71

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 72  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 131

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 132 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 191

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 192 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 249

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 250 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 309

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 310 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 356


>gi|297171184|gb|ADI22193.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0200_34B07]
          Length = 371

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 144/343 (41%), Gaps = 51/343 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+E EVS+ S ++  +A++   + V    +D+                      
Sbjct: 8   LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 L   + ++ F +LHG +GEDG +Q +LEL  + Y  +G
Sbjct: 68  DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134
           + ASA+ MDK+ ++ + ++ G+P     ++ R     +              P  +KP  
Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEI 192
            GSS+GI  +   Q +   L  +S ++       ++      L     G           
Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDTKXXYSKDRSKTLENLNVPFWGTTIHKXSGVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  +FY Y  KY    S  V+PA +     + VQ LA  A +AI C G++R D     
Sbjct: 248 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFMC- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               V   EIN  PG TP+S++P++ A AG  + +L+  +++ 
Sbjct: 307 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQL 349


>gi|168240194|ref|ZP_02665126.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
 gi|194451264|ref|YP_002044411.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|194409568|gb|ACF69787.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL476]
 gi|205340288|gb|EDZ27052.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Heidelberg str. SL486]
          Length = 364

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|198244109|ref|YP_002214333.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
 gi|197938625|gb|ACH75958.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Dublin str. CT_02021853]
          Length = 364

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA++P  +  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQLPSGVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 350


>gi|11345392|gb|AAG34683.1|AF310953_1 ligase VanB2 [Enterococcus faecium]
          Length = 342

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 139/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A + GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VATIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGLTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +  +    +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              E +  S N+   +PA IP++    VQ  A   ++ +GCRG++R D         +  
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERNRVQETAKKVYRVLGCRGLARVDLFL-QEDGGIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG T  S +P M A AG +   ++  ++  A
Sbjct: 303 NEVNTLPGFTSYSRYPRMMAAAGITLPAMIDSLITLA 339


>gi|78212393|ref|YP_381172.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
 gi|123578519|sp|Q3ALB5|DDL_SYNSC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78196852|gb|ABB34617.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9605]
          Length = 350

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S E +VS+ S       L        + V  I +DR                
Sbjct: 8   VGLVFGGRSGEHDVSIRSAATVVRGLRSGENTERYTVQPIYIDRDGRWWGTDLAEATLTS 67

Query: 46  -----LAHLKP--------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                L   +P              DL + VLHG  GEDG +Q + +L   P+  +G+L 
Sbjct: 68  EVAPELTTPRPPSGFQGFPEGCDAIDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKG 135
           SA+SMDK   K   SS G+   P + ++                 +  ++ P  +KP   
Sbjct: 128 SAVSMDKQAMKSAFSSAGLSQVPYVALHASELEDAKSRSALLDRIERELNYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++  Q +   L Q+++ +    +        +E            V      
Sbjct: 188 GSSVGISKVRSRQELEAGLEQAAALDPRLVVEQGVNAREVECAVLGRRTLEASVIGEVRF 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y YE KY++  ST ++PA +P  +   ++  A  A  A+G  G+SR DF +D  + 
Sbjct: 248 DADWYDYETKYTAGRSTTLIPAPLPDPVRDRIREQALQACAAVGVHGMSRVDFFYDETND 307

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  EIN  PG T  S+FP + A +G +  +L+  +++ A
Sbjct: 308 QLWINEINTLPGFTAQSMFPMLWAASGVTLEQLVHKLIQTA 348


>gi|160878245|ref|YP_001557213.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
 gi|160426911|gb|ABX40474.1| D-alanine--D-alanine ligase [Clostridium phytofermentans ISDg]
          Length = 340

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 99/340 (29%), Positives = 162/340 (47%), Gaps = 51/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------DRSVGLVLAHLKP 51
           + VL GG+S EREVSLSSG   A+AL + G++V  +D+           S+   +    P
Sbjct: 3   VVVLAGGLSPEREVSLSSGSKIANALMEKGYEVLLLDLYLGIKDVTNIDSLFRKMEDQNP 62

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D  F  LHG+ GE+G +QA+ ++
Sbjct: 63  YQYQVPKEEPNLTKLKEDSGNGGILIGENVLLLCQYADKVFLALHGSIGENGQLQAMFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPL 133
             I YT SG + S L+MDK  SK ++   G+     I+ +     + +  +  P VIKPL
Sbjct: 123 YGISYTGSGYIGSLLAMDKGLSKVIMQKHGIETPDYIVADLTEEQELEKTLMLPCVIKPL 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ +++  + +   L  +    + +++LIE+ + G E + G++   +L +    
Sbjct: 183 SCGSSVGVSIVRSQEELGKALDYAK--KYENKVLIEELIVGREFSVGILNHHALPLI-EI 239

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +PK+ FY Y  KY +  +T V PA++  +I  ++Q  A   H+ +     SR DFL    
Sbjct: 240 IPKTGFYDYTNKYQAGMATEVCPAQLEDEISIKMQEAALKVHEVLQLGFYSRVDFLL-KE 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               + LE N  PGMTP S+ P+ AA  G S+ +L   ++
Sbjct: 299 DGSFYCLEANTLPGMTPTSLLPQEAAAIGISYSKLCELIL 338


>gi|160947040|gb|ABX54687.1| D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 349

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 140/338 (41%), Gaps = 43/338 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE EVSL S  +    L    F++ +I +D      L              
Sbjct: 7   IAIIFGGQSSEYEVSLKSTVSVLETLSTCNFEIIKIGIDLGGKWYLTTSNNKDIEYDVWQ 66

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                   + +PD+ F +LHG  GEDG +Q + EL+ IPY   G
Sbjct: 67  TDPSLQEIIPCFNNRGFYNKTTNKYFRPDVLFPILHGGTGEDGTLQGVFELMNIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVP-----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +  SA+ MDK    +   S GV      +  +                P  +KP + GSS
Sbjct: 127 VTPSAICMDKYLLHEFAQSVGVKSAPTLIIRTRNCKDEIDKFIEKNDFPIFVKPNEAGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            GI  + +   +   L ++  ++    +        I           +   +     SD
Sbjct: 187 KGINKVNEPDKLEDALTEAFKYSKSVIIQKAIIGREIGCAVLGNEKLLVGECDEVSLNSD 246

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ Y  KY  +++   +PA I ++   E+++ A L ++ +GC G++R DF     + ++ 
Sbjct: 247 FFDYTEKYQMISAKVNIPASISVEFSNEMKKQAQLLYRLLGCSGLARIDFFLS-DNNEIL 305

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P+M    G +++E++  ++  A
Sbjct: 306 LNEINTLPGFTEHSRYPKMMEAVGVTYKEIITKLINLA 343


>gi|88856723|ref|ZP_01131378.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88814020|gb|EAR23887.1| D-alanine:D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 372

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 141/356 (39%), Gaps = 65/356 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-------HLKP-- 51
           + +L GG SSE  +S ++     SA++   + V  + + R     L         L P  
Sbjct: 15  VVLLFGGRSSEHSISCATAGGVLSAIDRDKYTVIPVGITRDGAFTLQPDDAEAFRLNPEA 74

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG VQ ++EL
Sbjct: 75  MPEIVDNGTRVRWPETSNSRELTVTDSAGQTRSLGDVDVVFPILHGPFGEDGTVQGLIEL 134

Query: 75  LEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDSQHLISP 126
             +PY  +G+LAS++ M+K  +K         V     +                  +  
Sbjct: 135 TGLPYVGNGVLASSMGMNKHFTKLALEAAGVAVAPWVTISAVQWSRHPDVWRQRASSLGL 194

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+G+  +     +   L  +         L+EQ + G E+ CGV+    
Sbjct: 195 PVFVKPARAGSSVGVTKVTHADELDAALATAF--AEDSTALVEQAMTGREIECGVLSGRD 252

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIG 239
              T ++V      +    Y                PA++      ++QR A  A +AIG
Sbjct: 253 GGDTRVSVAGEIVVTGRDFYDFEAKYLDVAAAELICPAELHDGELWQMQRTAARAFEAIG 312

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             G++R DF FD    +    EIN  PG TP+S+FP+  A +G S+ EL+  ++E 
Sbjct: 313 GAGLARVDFFFDGA--EFVVNEINTLPGFTPISMFPKCWAASGMSYPELIDELIEL 366


>gi|254967068|gb|ACT97572.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 356

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 150/349 (42%), Gaps = 56/349 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AVL GGISSE ++S  S  +    L    +++  + + R                     
Sbjct: 4   AVLFGGISSEHDISCLSAASILRNLNKDKYEIYPVGITRDGEWFYCPDCDPDRVESGAWE 63

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                     +  ++ D  F VLHG  GEDG +Q +LEL  IPY
Sbjct: 64  RMTGKVKVVLAPDRGMHGMVLLREGEIEVVRLDCVFPVLHGVGGEDGTMQGLLELAGIPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----------PPYV 129
              G+ ASA +MDK  +K+V+   GV      L  R+  +                 P  
Sbjct: 124 VGCGVAASANTMDKALTKKVIEGTGVRQARYYLALRYDFERNAEAVVAAAAETLGAFPVF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASL 187
           +KP   GSS+G+        +   L ++       ++L+E+++DG E+ C V    +   
Sbjct: 184 VKPCSQGSSVGVAKANNLLELAEGLTEALKL--DTKVLVEEFIDGHEVECAVLGNLEPQA 241

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                  P  +FY+++ KY   +S   +PA I  +    V++ A   + A+GCRG+SR D
Sbjct: 242 STVGEIAPTQEFYTFDAKYKDESSRLYIPAHITEEQLATVRQDAVRVYTALGCRGLSRVD 301

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F     S +V + E+N  PG T +S++P++  Y G  + ELL  ++  A
Sbjct: 302 FFVTHDSGEVVFNELNAIPGFTSISMYPKLFDYEGIGYAELLDRLISLA 350


>gi|194363951|ref|YP_002026561.1| D-alanyl-alanine synthetase A [Stenotrophomonas maltophilia R551-3]
 gi|194346755|gb|ACF49878.1| D-alanine/D-alanine ligase [Stenotrophomonas maltophilia R551-3]
          Length = 364

 Score =  165 bits (417), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG SSE EVSL S K    AL    F+   + +D+     L+             
Sbjct: 6   VGIIFGGKSSEHEVSLQSAKNILDALNRERFEPVLVGIDKQGQWHLSQPDTFLINADDPS 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+   ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGTSLAVRPGAEQSQLQPSDAASALGQIDVVLPIVHGPLGEDGALQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P+  S +L SA++MDK  +K+++   G+ V P + + R              +  P  +K
Sbjct: 126 PFVGSPVLGSAVAMDKDVTKRLLRDAGLKVAPWLCIRRHQAAAVDVDAVIAQLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +K        L  +    +  ++L+E  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGVSKVKDAAGFAGALELAL--RYDHKVLVESAVVGREIECAVLGNTLPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      V+PA I  D    +Q++A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDEFYAYDTKYINEDGAEVVVPADIDADTQARIQQIALQAYQALECAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 304 FLTA-DGEIVINEVNTLPGFTRISMYPKLWGASGVDYTTLITRLIELA 350


>gi|302334812|ref|YP_003800019.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
 gi|301318652|gb|ADK67139.1| D-alanine--D-alanine ligase [Olsenella uli DSM 7084]
          Length = 330

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 109/307 (35%), Positives = 163/307 (53%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ER++SL SG AC  AL +AGF +V  +D+        L   + D+AF  L
Sbjct: 11  VAVLSGGWSDERDISLQSGMACMGALREAGFVRVELLDIAAPDFAARLLDGRFDVAFVAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG +GEDG +Q +LE+L IPYT SG+LASA+  +K  +K +    G+PV   + +   T 
Sbjct: 71  HGRYGEDGCIQGLLEVLHIPYTFSGVLASAVGTEKAVAKALYREAGIPVPEGVDLPEGTR 130

Query: 119 DSQHL-------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +          +  P  +KP   GSS G+  + +   +   + +++  + GD++L+E  
Sbjct: 131 LTSDQADRLVRTLGLPLFVKPAANGSSFGVTRVTETAQLADAVARAA--SEGDRVLVETC 188

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQR 229
           V+G E+T  V+G+       I     D   Y+ K     +   HV+PA++    Y+    
Sbjct: 189 VEGTEITVPVIGNDDPVALPIVEIAFDSEFYDAKVKYEPAALHHVIPARLDQTTYERASE 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH+A+GCRG+SRSDF+          LE N  PGMT  S+ P+ A +AG  F +L 
Sbjct: 249 LAVRAHRALGCRGVSRSDFIVTAE-GAPVILETNTIPGMTETSLLPDSARHAGIGFPDLC 307

Query: 290 LWMVEDA 296
              VE A
Sbjct: 308 RRFVELA 314


>gi|220904145|ref|YP_002479457.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|254767728|sp|B8IZ52|DDL_DESDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219868444|gb|ACL48779.1| D-alanine/D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
          Length = 306

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 100/302 (33%), Positives = 156/302 (51%), Gaps = 7/302 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGN 61
           ++ GG S ER+VSL+  +A   ALE  G +V+  D+  +   +LA   + D A   LHG 
Sbjct: 5   LIAGGWSPERQVSLNGARAMVPALEARGHEVTFFDLLENFNGLLAAAEQHDFALINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDS 120
            GEDGLVQA+L+ +  PY  +G   S L+++K  +KQ+    G+P      +      D 
Sbjct: 65  PGEDGLVQAMLDQVGCPYQGAGPAGSFLALNKCAAKQIFRRAGLPTADWDFVPAFPGKDW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  +K   GGSSL +   +    +    +    +  G+++++E  + G E+TCG
Sbjct: 125 QPRLPYPLFVKSNTGGSSLRLGRARNRAELDD--IMGQIFAAGEEVIMEPVLPGREVTCG 182

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++G+  L    I     DF++YE KY    +  + PA I  ++   VQ L   AH+A+G 
Sbjct: 183 ILGEDPLPPILIEPVAGDFFNYESKYEQDGARELCPAPIGDELTARVQELTLAAHRALGL 242

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASC 298
           RG SR+DF+  P    +  LE+N  PGMT  S+ P  A   G  F +LL  ++E   A C
Sbjct: 243 RGYSRADFILGP-DDSLTLLEVNTLPGMTATSLVPREARTIGLDFGQLLERLMELGLADC 301

Query: 299 LR 300
            +
Sbjct: 302 KK 303


>gi|222085556|ref|YP_002544086.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
 gi|221723004|gb|ACM26160.1| D-alanine-D-alanine ligase protein [Agrobacterium radiobacter K84]
          Length = 355

 Score =  165 bits (417), Expect = 8e-39,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 153/345 (44%), Gaps = 53/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE +VSL S +    A++   +++  I + R    +L  L+          
Sbjct: 7   VAVLFGGQSSEHDVSLMSARNVIKAIDVDKYEIVPIVIRRDGQWLLTALEGGALPDPVVY 66

Query: 51  -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D+ F VLHG +GEDG +Q +  ++ +P   
Sbjct: 67  AGSEVCLLPGGKGRILAVGDPTGPRELPAIDILFPVLHGLYGEDGSIQGLARMVGVPLVG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGS 137
            GIL SA ++DK  +K+++   G+PV  SI V         ++   +  P  +KP++ GS
Sbjct: 127 CGILGSATAIDKDIAKRLLRDAGLPVARSITVRPGDTLSFEEAASALGSPVFVKPVRQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------LDVT 190
           S+G+      +     L+++    H D++LIE++V   E+ C V+               
Sbjct: 187 SVGVSKAANAEEFRAALIEAF--KHDDKVLIEEFVKAREIECAVLEQTDGTLFVSLPGEI 244

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 S +           +   +PA++P D+ + ++ L+  A +A+GC G++R DF  
Sbjct: 245 VTGQDHSFYTYDAKYIDEDGAITSVPAQLPADLTQHLRELSLDAFRALGCEGLARVDFFV 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            P    +   E+N  PG T +S++P+     G S+  L+  ++E 
Sbjct: 305 RP-DMSMVVNEVNTMPGFTNISMYPKAMEATGISYPALVDRLIEH 348


>gi|188579044|ref|YP_001915973.1| D-alanyl-alanine synthetase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|188523496|gb|ACD61441.1| D-alanine--D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 369

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 150/350 (42%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S+E EVSL S      AL+   F+   I +D+                    
Sbjct: 6   VGLIFGGKSAEHEVSLQSAGNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 46  ------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                         LA  + D+ F ++HG  GEDG +Q +L + 
Sbjct: 66  RIALHRSGRGVALLPGAQQQQLRPIQPEQALALAQIDVVFPIVHGTLGEDGSLQGLLRMA 125

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYV 129
            +P+  SG+L SA++MDK  +K+V+    + V P +  +R T            +  P  
Sbjct: 126 NLPFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+G  V +   +       + +  +  ++L+E  V G E+ C V+G+A    
Sbjct: 186 VKPANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHA 243

Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +           Y      ++      V+PA I     + +Q++A  A+QA+GC G++R 
Sbjct: 244 SVCGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D        ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 DVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRGLITRLIELA 352


>gi|148284350|ref|YP_001248440.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
 gi|146739789|emb|CAM79664.1| D-alanine--D-alanine ligase [Orientia tsutsugamushi str. Boryong]
          Length = 291

 Score =  165 bits (417), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 97/293 (33%), Positives = 164/293 (55%), Gaps = 5/293 (1%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGL 67
           S+EREVSL S     +AL   G++V++IDV + + + L+ +  P   FN L G +GEDG 
Sbjct: 2   SAEREVSLMSNDNVQAALISNGYQVTRIDVGQDIAVKLSEITPPYTVFNCLVGTYGEDGC 61

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           +  +L ++ IPYTHSG+  SA + DK  +K ++    +    SI +N         I  P
Sbjct: 62  IPGLLNIMNIPYTHSGVKTSAAAFDKQIAKTILQCYKIKTPASITINSNDNVINDPILRP 121

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           YVIKPL+ GSS+G+ ++  +      L +   +  G+++L+EQY+ G EL   ++    +
Sbjct: 122 YVIKPLQQGSSIGVKIVHLEDKF---LFKDYKFQFGNKVLVEQYIKGRELQVALLDGKVV 178

Query: 188 DVTEIAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            + EI +     FY Y+ KYS   + H++P ++P++   ++  +A   ++   CRG  R 
Sbjct: 179 GILEIKMLKDKIFYDYQSKYSPGFAEHIIPPRLPVNTVNQIMNIAEKVYKIFDCRGPCRL 238

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           + +   +  +V+ +E+N  PGMT +S +PE+A Y G SF EL+  ++  A C 
Sbjct: 239 ECILSDIDNEVYVIELNTHPGMTSLSSYPEIAQYYGISFNELVERILITAKCD 291


>gi|7960291|gb|AAF71281.1|AF253562_5 ligase [Enterococcus faecalis]
          Length = 349

 Score =  165 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 92/340 (27%), Positives = 147/340 (43%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAH--- 48
           +AV+ GG S+E EVSL S  A    +    F +  I + RS            +L +   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +K DL F VLHG  GE+G +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGENGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++        ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + + Q +   +  +   +    +        +      + +  +   +  
Sbjct: 186 RAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + P 
Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           S ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344


>gi|189499957|ref|YP_001959427.1| D-alanyl-alanine synthetase A [Chlorobium phaeobacteroides BS1]
 gi|229463740|sp|B3EQ14|DDL_CHLPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189495398|gb|ACE03946.1| D-alanine/D-alanine ligase [Chlorobium phaeobacteroides BS1]
          Length = 360

 Score =  165 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 91/351 (25%), Positives = 155/351 (44%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE E+S+ S KA ++ ++   + +  + + R                    
Sbjct: 6   VALLFGGKSSEHEISIISAKAVSAHIDRTTYTLFPLYISRDGRWFKGRTARKVLDLDITG 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              ++AF VLHG +GEDG +Q +LE+  
Sbjct: 66  LLKSRTIETTNRQLLAMTENRDEDLFDFNFQKEGIEVAFPVLHGAYGEDGKIQGLLEVFA 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPP 127
           IPYT   + +S+++MDK  +K      G+ V   + V R              +   +PP
Sbjct: 126 IPYTGCNVQSSSMTMDKEITKLCAVQAGIHVADYMTVLRPDYLNNRSAIAETIKKRFAPP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           + +KP   GSS+GI  I     +   L ++       ++L+E+ ++G E+   V+G+   
Sbjct: 186 FFVKPANLGSSVGIAKIHSFDELENALDEACRL--DVKILVEKAIEGREVEVAVLGNEHP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +      P  DFY +  KY   ++   +PA++  D    +Q     A +A+GC G+SR
Sbjct: 244 IASVPGEIEPGGDFYDFTDKYIDGSARLHIPARVDADTSARLQEEGIKAFRALGCSGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  S ++   EIN  PG T +S++P +  +AG  F EL+  +V  A
Sbjct: 304 IDFFVEKGSGRIILNEINSIPGFTSISMYPMLMEHAGIGFTELIDRLVRFA 354


>gi|33355853|gb|AAQ16273.1| D-Ala:D-Ser ligase [Enterococcus faecalis]
 gi|77380199|gb|ABA71731.1| VanG [Enterococcus faecalis]
          Length = 349

 Score =  165 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 93/340 (27%), Positives = 147/340 (43%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------VLAH--- 48
           +AV+ GG S+E EVSL S  A    +    F +  I + RS            +L +   
Sbjct: 6   IAVIFGGNSTEYEVSLQSASAVFENINTNKFDIIPIGITRSGEWYHYTGEKEKILNNTWF 65

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         +K DL F VLHG  GEDG +Q I EL  IP
Sbjct: 66  EDSKNLCPVVVSQNRSVKGFLEIASDKYRIIKVDLVFPVLHGKNGEDGTLQGIFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133
                 L+SAL MDK R+ ++VS  G+ V  S+   RF  ++        ++ P  IKP+
Sbjct: 126 VVGCDTLSSALCMDKDRAHKLVSLAGISVPKSVTFKRFNEEAAMKEIEANLTYPLFIKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + + Q +   +  +   +    +        +      + +  +   +  
Sbjct: 186 RAGSSFGITKVIEKQELDAAIELAFEHDTEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + P 
Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQEAAVTIYKALGCSGFSRVDMFYTP- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           S ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFSQMLDKLI 344


>gi|238761558|ref|ZP_04622533.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238700072|gb|EEP92814.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 289

 Score =  165 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 95/291 (32%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125
           L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   +             + 
Sbjct: 62  LQLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELAACVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  + +   +   L+++    H   +LIE+++ G E T  ++G+ 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDRASELHAALVEAF--RHDTDVLIEKWLSGPEFTVAILGED 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I  P    Y YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAELALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGGFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILMLA 288


>gi|78045802|ref|YP_361977.1| D-alanyl-alanine synthetase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|78034232|emb|CAJ21877.1| D-alanine--D-alanine ligase A [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
          Length = 367

 Score =  165 bits (416), Expect = 9e-39,   Method: Composition-based stats.
 Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 6   VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 65

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  RIALHRSGRGVALLPGAQQQQVRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+   G+ V P +  NR T               P  +K
Sbjct: 126 PFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAPFVCFNRHTAAMADVEALIAQFGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++           + +  +  ++L+E  + G E+ C V+G+A+   + 
Sbjct: 186 PANQGSSVGVSQVRSADQFAAA--LALALAYDYKVLVEAAIAGREIECAVLGNATPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y  +   ++      V+PA I     + +Q++A  A+QA+ C G++R D 
Sbjct: 244 CGEVVVHDAFYSYQTKYISEHGAEIVIPADIDARTQQRIQQIAVQAYQALDCAGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 304 FLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLIARLIELA 350


>gi|304389915|ref|ZP_07371872.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315657167|ref|ZP_07910051.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
 gi|304326808|gb|EFL94049.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. curtisii
           ATCC 35241]
 gi|315492270|gb|EFU81877.1| D-alanine-D-alanine ligase [Mobiluncus curtisii subsp. holmesii
           ATCC 35242]
          Length = 375

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 68/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S ++       ++   F+   I + ++   VL              
Sbjct: 10  VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 70  GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ +PYT  G+ AS+  MDK  +K ++   G+PV    +++ F    +            
Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---------GDQLLIEQYVDGIE 176
            P  +KP + GSSLG+  +   Q     ++ +   +          G + +    ++G  
Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFEAAVVAARRHDPKVIVEAAVQGAREIECAVLEGRA 249

Query: 177 LTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                      + +            Y    +        PA+IP  +  ++Q  A  A 
Sbjct: 250 GGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQI---PAQIPAGVAAQIQSYARQAF 306

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +G  G+SR DF + P + ++   E+N  PGMTP S++P M    G S+ +L+  ++E 
Sbjct: 307 QILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIEL 366

Query: 296 ASCL 299
           A   
Sbjct: 367 ALAH 370


>gi|240144453|ref|ZP_04743054.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
 gi|257203564|gb|EEV01849.1| D-alanine--D-alanine ligase [Roseburia intestinalis L1-82]
          Length = 351

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 156/345 (45%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+ER+VS  +G   A AL + G +V  +D                       
Sbjct: 3   IVVLAGGLSTERDVSFKTGDMVAKALRENGHQVILLDVFMGYSDKKEDLTGIFDRSEEVS 62

Query: 38  --------VDRSVGLVLAHLKP-----------------DLAFNVLHGNFGEDGLVQAIL 72
                   +   +  V A  K                  D+ F  LHG  GE+G +QA  
Sbjct: 63  VKVSGIPEIAPDLAKVKASRKDQSDNFFGPNVIELCQMSDIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +L  I YT +G L+SAL+MDK  SK++  S G+P      + +           +  P V
Sbjct: 123 DLFGIRYTGTGYLSSALAMDKEMSKKLFLSAGIPAPKGASMKKADCSDDITKLGVQFPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +    +     L ++  W   + L++E+YV G E + GV+   +L  
Sbjct: 183 VKPCCGGSSIGVSIAHNAEEYKAALDEAFRWE--ENLIVEEYVKGREFSVGVIEGKAL-P 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P   FY Y+ KY + ++    PA++   + +++Q  A    Q +G    SR+DFL
Sbjct: 240 IIEIAPVQGFYDYKNKYKAGSAVETCPAELSEAVTEKMQHYAEQVAQVLGLDTYSRTDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D     ++ LE N  PGMTP S+ P+ A   G +F EL   +++
Sbjct: 300 LDENEN-IYCLEANTLPGMTPTSLLPQEAQVVGVNFNELCEKLIQ 343


>gi|293189634|ref|ZP_06608351.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
 gi|292821372|gb|EFF80314.1| D-alanine--D-alanine ligase [Actinomyces odontolyticus F0309]
          Length = 378

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 157/362 (43%), Gaps = 70/362 (19%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQI-------------------------- 36
           ++ GG SSE E+S S+     +A++   + V  +                          
Sbjct: 11  IVFGGRSSEHEISCSTAAGILTAIDRTKWDVIPLGITRDGQWVRVADDPSALEFKDGKGQ 70

Query: 37  -------------------------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLV 68
                                    D D S   V+        D+ F +LHG +GEDG +
Sbjct: 71  CVTAGSTRVALTPGEGNLVELSYDGDPDASDSRVVGVEDLGHVDIVFPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120
           Q + E+  + Y   G+ +SA+SMDK  +K         V     V            MD 
Sbjct: 131 QGLFEMAGVRYVGCGVTSSAVSMDKHLTKTVLAAAGIDVGRWELVTARQWDTDATACMDR 190

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +   + +P+ + +++  NH  ++++E    G E+ CG
Sbjct: 191 IEGLGFPVFVKPCRAGSSVGISRVTCREDLPVAIKEAA--NHDPRIIVEASTSGREVECG 248

Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G  S   +      EI +P+ +FY YE KY         PA +  +    ++  A+ A
Sbjct: 249 VLGSRSDWRSGTAPLGEIVIPEGEFYDYEHKYVDDIVGLSCPADVAPEYADRIRATAWRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF FD  +  V   E+N  PG TP+S++P+M A +G S+ +LL  ++ 
Sbjct: 309 FDALECEGLARVDFFFDEATDSVIINEVNTMPGFTPISMYPQMWAASGLSYSDLLNELLT 368

Query: 295 DA 296
           +A
Sbjct: 369 EA 370


>gi|291527562|emb|CBK93148.1| D-alanine--D-alanine ligase [Eubacterium rectale M104/1]
          Length = 351

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T         ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++K        L  +  W   ++L+IE++V G E + GV+   +L  
Sbjct: 183 VKPCCGGSSIGVTIVKDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 240 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|49087034|gb|AAT51407.1| PA4201 [synthetic construct]
          Length = 347

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/326 (32%), Positives = 161/326 (49%), Gaps = 37/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           +AVL GG S ER+VS +SG     AL  AG +V  +D                       
Sbjct: 8   VAVLFGGSSEERDVSTASGAQVIQALRSAGHQVLAVDTASGLLGAEEERRLLASKVKEVP 67

Query: 38  VDRSVGLVLAHLK-----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            D     ++   K            D+ F  LHG  GEDG +QA+L+     YT SG LA
Sbjct: 68  PDSDSLAIIRSGKQSLLSAGELAGVDVFFLALHGGTGEDGTLQALLDAGGFAYTGSGHLA 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK  +K++  + GV     ++      + +  +  P V+KP   GS++G+ ++  
Sbjct: 128 SAMAMDKDVAKRLFLAAGVETASWLMAPASEEEVREQLGFPLVVKPNSQGSTVGLSIVHS 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +    +GD++++E++V G E+T GV+ D +L V EI +   + + YE KY
Sbjct: 188 QAELQPAIELAG--RYGDEVMLERFVAGREVTVGVLDDQALPVGEILLGGQEVFDYEHKY 245

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +     V PA +P  I  E QRLA   H+A+   G SR+DF  D    +++ LE+N  P
Sbjct: 246 QAGAVREVFPADLPPAIAAEAQRLALKVHRALKLSGYSRTDFRLDEQ-GRLWCLEVNTLP 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           GMT  S+ P+ AA AG  F EL   +
Sbjct: 305 GMTATSLLPQAAAAAGIGFAELCERI 330


>gi|298346320|ref|YP_003719007.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315654911|ref|ZP_07907816.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
 gi|298236381|gb|ADI67513.1| D-alanine--D-alanine ligase [Mobiluncus curtisii ATCC 43063]
 gi|315490872|gb|EFU80492.1| D-alanine-D-alanine ligase [Mobiluncus curtisii ATCC 51333]
          Length = 375

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 77/364 (21%), Positives = 140/364 (38%), Gaps = 68/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S ++       ++   F+   I + ++   VL              
Sbjct: 10  VAVIFGGRSGEHSISCATAAGVLDHIDRTRFEPVPIGITKAGAWVLMPDESDSLRLQDGQ 69

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 70  GAEIEDNGTFVALVPQNQHLFFWDSRTPSSPIKDLGRIDVVMPLLHGPYGEDGTIQGLCE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ +PYT  G+ AS+  MDK  +K ++   G+PV    +++ F    +            
Sbjct: 130 MVGVPYTGCGVGASSNGMDKGCAKVLLEHGGIPVGRYHVISDFDWRHRADEVPTPILSWG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---------GDQLLIEQYVDGIE 176
            P  +KP + GSSLG+  +   Q     ++ +   +          G + +    ++G  
Sbjct: 190 LPVFVKPARAGSSLGVTRVDSWQDFESAVVAARRHDPKVIVEAAVQGAREIECAVLEGRA 249

Query: 177 LTCG-VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                      + +            Y    +        PA+IP  +  ++Q  A  A 
Sbjct: 250 GGAPRTTPPGEVVMVSTPGMYDFQSKYFANEAVQLQI---PAQIPAGVAAQIQSYARQAF 306

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +G  G+SR DF + P + ++   E+N  PGMTP S++P M    G S+ +L+  ++E 
Sbjct: 307 QILGGEGLSRVDFFYVPDTGEIILNEVNTMPGMTPYSLYPGMWENVGLSYTDLVTELIEL 366

Query: 296 ASCL 299
           A   
Sbjct: 367 ALAH 370


>gi|261343730|ref|ZP_05971375.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
 gi|282568113|gb|EFB73648.1| D-alanine--D-alanine ligase A [Providencia rustigianii DSM 4541]
          Length = 367

 Score =  165 bits (416), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 146/347 (42%), Gaps = 55/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E EVSL S K   + L+   F V  I +++                    
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRNKFDVCLIGINKEGQWHEYDEANFLVHGDDPA 65

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   KP    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  HIALNTPKRSIAIVPGKQKEQFISLEDAKPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ + P I              +   +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDVTKRLLRDAGLNIAPFITILKSGREQISYAATVEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  +       ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVNNESEFYAALDFAF--LFDVKVLIESAVKGREIECAVLGNEQPLASP 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V PA +   + ++++++A  A+QA+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDEAVSEKIRQIALEAYQALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                +  V   EIN  PG T +S++P++    G +++EL+  ++E 
Sbjct: 304 FLT-DTNDVVINEINTLPGFTNISMYPKLWQQGGMTYQELISRLIEL 349


>gi|299538289|ref|ZP_07051574.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
 gi|298726491|gb|EFI67081.1| D-alanine--D-alanine ligase B [Lysinibacillus fusiformis ZC1]
          Length = 359

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 90/341 (26%), Positives = 152/341 (44%), Gaps = 46/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                      
Sbjct: 5   IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSDGEWRRGERLEKPVSAIEEL 64

Query: 45  -------VLA-------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                  +L               +K D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 65  QFGDNTTILENNITDFLIDKSGNEVKFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R              ++ ++ P  +KP   
Sbjct: 125 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCENNLNWPMFVKPANL 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI      + +   +  +  ++    +        +EL         + V     P
Sbjct: 185 GSSVGISKATDREQLVKAIEVALQYDRKIVVEQGIVAREVELAVLGNDYPEVSVPGEIKP 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +DFY Y+ KY   ++  ++PA++P++    ++ LA  A +AI   G+ R+DF     + 
Sbjct: 245 VTDFYDYDSKYKDGSTALIIPAELPVETVASLKELAKRAFKAIDGSGLVRADFFVTAENN 304

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 305 -VYINEVNTMPGFTPVSMYPLLWQHTNVSYPELIDRLITLA 344


>gi|226310174|ref|YP_002770068.1| ligase [Brevibacillus brevis NBRC 100599]
 gi|226093122|dbj|BAH41564.1| ligase [Brevibacillus brevis NBRC 100599]
          Length = 350

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 91/344 (26%), Positives = 148/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHL------ 49
           +A+L GG SSE EVSL S  +   +L    ++V  + + R    +     +  +      
Sbjct: 6   VAILFGGCSSEYEVSLKSTSSVLESLCLEKYEVILLGITREGQWLRYTGNIESIRNDSWH 65

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         K D+ F +LHG  GEDG VQ +LEL  IP+
Sbjct: 66  QSEKCVPAFLSPCRQVRGIVTQENGAMTVTKVDVVFPILHGKNGEDGTVQGLLELAGIPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLK 134
                L+SA+ MDK  +  +    G+    S+ V   T       +   +  P  +KP K
Sbjct: 126 VGCHTLSSAICMDKDIAHTLAEGSGIKTPRSVAVYPNTDLATVQAATEPLGFPLYVKPAK 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI        +   +  +    H D+++IE+ + G E+ C V    +  +   + 
Sbjct: 186 AGSSIGITKAYSLSELFFGIENAL--QHDDKVVIEENITGFEVGCAVLGNREVIVGEVDE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 F+ Y  KYS   +   +PA+I  ++  ++++ A   +Q  GCRG +R D    P
Sbjct: 244 IELLQGFFDYTEKYSLETAHIHVPARIDEELAHKIKQTATHLYQVFGCRGFARVDMFVTP 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               + + E+N  PG T  S +P M   AG S++ELL  ++  A
Sbjct: 304 -DGDIVFNEVNTIPGFTSKSRYPSMLRAAGISYKELLDTLIMLA 346


>gi|33866175|ref|NP_897734.1| D-alanyl-alanine synthetase A [Synechococcus sp. WH 8102]
 gi|39930834|sp|Q7U5Q9|DDL_SYNPX RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33639150|emb|CAE08156.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8102]
          Length = 353

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 146/344 (42%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG S E +VS+ S +  A  L        ++V  + +DR            VL+ 
Sbjct: 8   VGVVFGGCSGEHDVSIRSAQTVAKGLTLGANRERYRVVLVYIDRDGRWWGPDLAGKVLSS 67

Query: 49  LKP----------------------DLA---FNVLHGNFGEDGLVQAILELLEIPYTHSG 83
             P                      D+    + VLHG  GEDG +Q + EL++ PY  +G
Sbjct: 68  GCPPADSDLPQPLPAPGFRGLPAGTDVVAVWYPVLHGPNGEDGTIQGLFELMQQPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----------ISPPYVIKP 132
           +L SA+SMDK   K  ++  G+   P +      +                +  P  IKP
Sbjct: 128 VLGSAVSMDKQAMKAALAGAGLAQVPYVCAQADELSDAARQEALLKRIESGLCYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +  + +   L  +++ +    +        +E            V   
Sbjct: 188 ANLGSSVGISKARNREELIHGLRLAATLDPRLVVEQGVQARELECAVLGGTTLRASVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y YE KY+   ST ++PA +P  I + ++  +  A  A+G  G++R DF +D 
Sbjct: 248 VRFDADWYDYETKYTDGRSTTLIPAPLPDGIVEAIRSQSIQACAAVGVTGMARVDFFYDD 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +V+  EIN  PG T  S++P +   +G +  +L+  ++E A
Sbjct: 308 SRDRVWLNEINTLPGFTSQSMYPMLWEASGVTLEQLVHELLESA 351


>gi|332295511|ref|YP_004437434.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
 gi|332178614|gb|AEE14303.1| D-alanine--D-alanine ligase [Thermodesulfobium narugense DSM 14796]
          Length = 308

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 13/304 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKPDLAFNVL 58
           +L GG SSE+EVS+ S +    +L +  + V  +D+       +   +     DL F VL
Sbjct: 5   ILCGGTSSEKEVSIWSAENVYKSLINTEYIVEMVDIATLSPYELCQKILCENFDLVFPVL 64

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q  L+ L I Y  SG+ + A++MDK R K +  S   P    I +     
Sbjct: 65  HGKPGEDGSIQGFLDTLGIKYIGSGVFSCAITMDKYRYKLICKSLEFPQPDFIAIRTKDS 124

Query: 119 D----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                   L   P V+KP   GSS+G+ ++  +  +   L       +   +L+E+++ G
Sbjct: 125 TEVLEFVRLKGFPLVVKPNSQGSSVGVSIVNNNNELKDALELGF--KYDPIVLVEEFIHG 182

Query: 175 IELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            E+TCGV+G++++        +PK+ F+ YE KY+      ++PA++  ++   +Q LA 
Sbjct: 183 KEITCGVIGNSNVIALPLVEILPKTKFFDYESKYNPQLCDEIVPARLNDNLKDRLQELAI 242

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++A  C+   R D   D     ++  EIN  PG+T  S+F +    AGYSF+E++  +
Sbjct: 243 KAYKAFDCKCFGRVDMFVDKYEN-IYLSEINTIPGLTANSLFTKEVKAAGYSFQEIVKLL 301

Query: 293 VEDA 296
           V+ A
Sbjct: 302 VKLA 305


>gi|258645244|ref|ZP_05732713.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
 gi|260402594|gb|EEW96141.1| D-alanine--D-alanine ligase [Dialister invisus DSM 15470]
          Length = 311

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 99/303 (32%), Positives = 156/303 (51%), Gaps = 11/303 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLH 59
           +AVLMGG+S E ++S  +G A   AL   G+   +++ + S V   L  +  ++ F  LH
Sbjct: 8   VAVLMGGVSREADISRKTGTAILQALLSLGYHAVKVEYNPSCVLKQLKAVGAEVVFIALH 67

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G +GEDG +Q+ILEL +IPYT SG+ +SA++MDK+ S +V    GV +  S         
Sbjct: 68  GKYGEDGTIQSILELSKIPYTGSGVSSSAITMDKIISSRVFKDAGVRMAFSKPYYLKNGI 127

Query: 120 S------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  +     P V+KP   GS++G+ ++ + + +   L +  +     ++L E Y+D
Sbjct: 128 DTVAESIEKNFKFPVVLKPACEGSTIGLEIVYEKEKLKEALKRVFAIE--SRILAEAYLD 185

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E T  V+   +L       P S  Y +  KY+S  + +++PA +P     E+ R+A L
Sbjct: 186 GKEFTIAVLNGKAL-PIIQICPHSGQYDFHSKYTSGATDYIVPAPLPGAAADEMTRMAIL 244

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A  C G+ R DF  D      F LE N  PGMT  S+ P+ AA  G  F  L   ++
Sbjct: 245 GYEAAECSGVVRFDFRTDKR-GTPFLLEANSIPGMTETSLVPKAAAAIGMDFPSLCENIL 303

Query: 294 EDA 296
             A
Sbjct: 304 LKA 306


>gi|239928719|ref|ZP_04685672.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291437043|ref|ZP_06576433.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
 gi|291339938|gb|EFE66894.1| D-alanyl-alanine synthetase A [Streptomyces ghanaensis ATCC 14672]
          Length = 385

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 151/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++ + + V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLKAIDRSQYDVLPIGITADGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  TPSVDQLAESTEGGVVLPVDPASREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  SG+LASA+  DK   K+V +S G+ V P +++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFTSFGLKVGPYVVIRPREWQRDESAARKKIV 198

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDLSGLDGAIAEAQ--RHDPKILVEAALRGREIE 256

Query: 179 CGV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV     G  +    EI  P +  Y         ++  ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPPDAHAYYDFEAKYIDSTPGIVPAPLTEEETAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P+M    G  + EL+  +V+
Sbjct: 317 FEAASCEGLVRADFFLTE-DGDFVINEINTMPGFTPISMYPQMWQATGIGYPELVDRLVQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|226330096|ref|ZP_03805614.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
 gi|225200891|gb|EEG83245.1| hypothetical protein PROPEN_04009 [Proteus penneri ATCC 35198]
          Length = 366

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 75/348 (21%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           +A++ GG S+E +VSL S K   + L+   F +  I ++             +L    P 
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYSETDYLLNSDNPK 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSKPLRAVAIIPGSVKKQFISLEDGQALPQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           PY    I++SA  MDK  +K+++          + +    + +    +    +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDGAGLAVAPFITIMAHQINDIHYNEMVRQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  ++     L  +    +  ++++E  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEEEFNAALEMAF--EYDLKVIVESAIVGREIECAVLGNEDPEVSP 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA +  +    ++++A  A++ + C G++R D 
Sbjct: 244 CGEIVLNDAFYAYNTKYIDEDGAKVVVPAVMDENTSLHIRQVALKAYRVLNCLGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   AG  ++ L+  ++E A
Sbjct: 304 FLT-QDNRVVINEINTLPGFTNISMYPKLWQSAGLGYQSLITKLIELA 350


>gi|160894445|ref|ZP_02075221.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
 gi|156863756|gb|EDO57187.1| hypothetical protein CLOL250_01997 [Clostridium sp. L2-50]
          Length = 352

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 150/345 (43%), Gaps = 52/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            V+ GG SSE EVS  S +  A A++   + ++ I + +    +                
Sbjct: 7   VVIFGGRSSEHEVSCISVQTVAKAVDTDKYDMTLIGITKDGKWLKADSIESIADGSWYDS 66

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +     D+ F VLHG +GEDG +Q + E+ +IPY   G+
Sbjct: 67  QVRAVISPDSAKEIIIKDGDRIYAEPVDVIFPVLHGLYGEDGTIQGLFEMADIPYVGCGV 126

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLKGG 136
            ASA +MDK  +K +     V     + V               +  ++ P  +KP   G
Sbjct: 127 FASAAAMDKFHTKIIADHINVTQAKFVPVVEDDFDDLDVAMDRVESELNYPVFVKPSSAG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS G+        +   L ++   NH  ++L+E+ + G EL CGV+G  +          
Sbjct: 187 SSKGVTKAHDRAELEAGLHEAL--NHDSKILVEETIIGRELECGVLGYGNHTKASGVGEI 244

Query: 195 ---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                +DFY ++ KY++ +S  ++ A IP +   E++  A     AI   G++R DF  +
Sbjct: 245 LAAADADFYDFDAKYNNADSKTIIGADIPEEAEDEIRAEAIRIFNAIDGFGLARVDFFLE 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + +V + E+N  PG T +S++P +    GY  + L+  ++E A
Sbjct: 305 KDTNRVIFNEVNTLPGFTSISMYPMLWDAEGYDIKTLVNTLIEMA 349


>gi|269957072|ref|YP_003326861.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269305753|gb|ACZ31303.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 377

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 88/360 (24%), Positives = 152/360 (42%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E  +S ++      A++   + V  + + R    V+A  +P         
Sbjct: 13  VALLFGGRSGEHAISAATAAGVLRAIDRDVYDVVPVGITRDGRWVVAADEPERWEITDGR 72

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +LE
Sbjct: 73  LPEVTSDDGAEVVLSLTAGERTLRVLEPGQVPGVLGEVDVVFPLLHGPFGEDGTLQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           L ++ Y  +G+LASA+ MDK   K V+   G+PV P  ++     +++          + 
Sbjct: 133 LADVHYVGAGVLASAVGMDKHFMKLVLEGQGLPVGPYTVILPRDWETRREEATAAVARLG 192

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +     +P  + ++    H  ++++EQ ++G E+ C V+G  
Sbjct: 193 LPVFVKPARAGSSLGITRVDDLADLPAAVAEAQ--RHDPKVIVEQGIEGREVECAVLGGR 250

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236
           S      ++P      +                      PA +P  +  +V+ +A     
Sbjct: 251 SGLPARASLPGEIVVDHGAHAFYDFEAKYLDESAVQLRCPADLPDKVVAQVRSIAVRTFD 310

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+G  G+SR D    P   +V   EIN  PG TP S++P M    G ++ +L+  +++ A
Sbjct: 311 AVGAEGLSRVDVFVTP-DERVIVNEINTMPGFTPFSMYPRMWEATGLTYPQLIDELIQLA 369


>gi|302542245|ref|ZP_07294587.1| D-alanine-D-alanine ligase [Streptomyces hygroscopicus ATCC 53653]
 gi|302459863|gb|EFL22956.1| D-alanine-D-alanine ligase [Streptomyces himastatinicus ATCC 53653]
          Length = 390

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 150/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L    P         
Sbjct: 24  VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADAPERMAIADRQ 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  LPSVERLAESEEGSVVLPVDPSSREVVYSEPGAVPKALGDVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++                 
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVLRPRDWERDPAAARARIT 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +   + +   + ++    H  ++++E  + G E+ 
Sbjct: 204 DFAAEHGWPVFVKPSRAGSSIGITKVDGPEQLDEAIEEAR--RHDPKVIVEALLRGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +          +  V+PA +  +  + VQ LA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYIDAAPGVVPAPLTAEETERVQELAVRA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G+ R+DF     S +    EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 322 FDAVSCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 380

Query: 295 DA 296
            A
Sbjct: 381 AA 382


>gi|51243910|ref|YP_063794.1| D-alanyl-D-alanine ligase [Desulfotalea psychrophila LSv54]
 gi|81643437|sp|Q6ASD8|DDL_DESPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50874947|emb|CAG34787.1| probable D-alanyl-D-alanine ligase [Desulfotalea psychrophila
           LSv54]
          Length = 322

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 105/304 (34%), Positives = 156/304 (51%), Gaps = 11/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A++ GG S EREVSL+        L+   + VS+ D    +  + A     D AF +LH
Sbjct: 11  IALIAGGTSGEREVSLTGADGVERILDKEKYLVSRYDSATDLPRLAADAASIDFAFILLH 70

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K+   +  +PV     +      
Sbjct: 71  GLHGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKEFYYNAELPVADWHTIAAGDFF 130

Query: 120 SQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               +      P V+KP   GSS+GI +   ++ +   +  +   + G  +++EQ++ G 
Sbjct: 131 YSEELIEDLGLPLVVKPACAGSSIGISLAHTEEELLAGINHARDCSAG-AIMVEQFIKGR 189

Query: 176 ELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELTC V+G+  L    +       K  F+ YE KY    S  + PA I   + ++VQ  A
Sbjct: 190 ELTCAVLGNDDLQALPVLEIVPGDKYAFFDYEAKYQPGASEEICPALIADALREQVQDHA 249

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AHQA+  RG SR+DF++     K++ LE N  PGMT  SI P+ AA  G  F  LL  
Sbjct: 250 IRAHQALRLRGYSRTDFIY-GEDGKLYLLETNTIPGMTETSILPQEAAATGMDFPSLLDT 308

Query: 292 MVED 295
           ++E 
Sbjct: 309 LIEL 312


>gi|254967044|gb|ACT97558.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 383

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 109/350 (31%), Positives = 167/350 (47%), Gaps = 55/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKICQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T         ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L  
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 257

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 258 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++ +   
Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLIDISRKN 366


>gi|223043955|ref|ZP_03613996.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|314934154|ref|ZP_07841515.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
 gi|222442670|gb|EEE48774.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Staphylococcus capitis
           SK14]
 gi|313653059|gb|EFS16820.1| D-alanine--D-alanine ligase [Staphylococcus caprae C87]
          Length = 356

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 147/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    +++  I +                      
Sbjct: 6   ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNDGEWKKKENITDEIKSTDEL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  VLNNVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNNEEELKSGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKVQLQIPADLDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  ++  A
Sbjct: 303 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLINLA 341


>gi|307329821|ref|ZP_07608976.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
 gi|306884550|gb|EFN15581.1| D-alanine/D-alanine ligase [Streptomyces violaceusniger Tu 4113]
          Length = 390

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 148/362 (40%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 24  VAVVFGGRSSEHAISVVTAGAVLRAIDREKYDVLPIGITADGRWALTADEPERMGIAGRE 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  LPSVERLAESGEGSVVLPVDPGNREVVYSEPGSVPKALGDVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++       +         
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWQQEPSAARRRIV 203

Query: 123 ----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  ++    +   + ++    H  ++++E  + G E+ 
Sbjct: 204 EFAAEHGWPLFVKPARAGSSIGITKVEDPADLDEAIEEAR--RHDPKVIVEALLRGREIE 261

Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C            +     P S    Y        ++  ++PA +  +  + VQ LA  A
Sbjct: 262 CGVLEYEDGPRASLPAEIPPVSSHAFYDFEAKYIDSAAGIVPAPLTEEQTRRVQELAVAA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF     S +    EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 322 FDAASCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLLQ 380

Query: 295 DA 296
            A
Sbjct: 381 AA 382


>gi|78058364|gb|ABB17543.1| VanG2 [Enterococcus faecalis]
          Length = 349

 Score =  164 bits (415), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 87/340 (25%), Positives = 140/340 (41%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S+E EVSL S  A    +    F +  I + R+                   
Sbjct: 6   IAIIFGGNSTEYEVSLQSASAVFENINTKKFDIVPIGITRNGDWYHYTGKKEKIANNTWF 65

Query: 46  ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                     K      DL F VLHG  GEDG +Q + EL  IP
Sbjct: 66  EDNENLYSVAVSQNRSVKGFIEFKEEKFYIIKVDLIFPVLHGKNGEDGTLQGLFELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----SQHLISPPYVIKPL 133
                 L+SAL MDK ++ ++VS  G+ V  S+              +  +S P  +KP+
Sbjct: 126 VVGCDTLSSALCMDKDKAHKLVSLAGISVPKSVTFKFSGKKAALKKIEKELSYPLFVKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + K Q +   +  +   +    +        +      + +  +   +  
Sbjct: 186 RAGSSFGITKVTKQQELENAIQLAFEHDAEVIVEETINGFEVGCAVLGIDELIVGRVDEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              S F+ Y  KY+  +S   +PA+I  +  K +Q  A   ++A+GC G SR D  + P 
Sbjct: 246 ELSSGFFDYTEKYTLKSSKIYMPARIDAEAEKRIQETAVTIYKALGCSGFSRVDMFYTP- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           S ++ + E+N  PG T  S +P M    G SF ++L  ++
Sbjct: 305 SGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSFAQMLDKLI 344


>gi|229826569|ref|ZP_04452638.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
 gi|229789439|gb|EEP25553.1| hypothetical protein GCWU000182_01944 [Abiotrophia defectiva ATCC
           49176]
          Length = 353

 Score =  164 bits (414), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 93/344 (27%), Positives = 153/344 (44%), Gaps = 51/344 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV++GG SSE EVSL SG++    ++   + V  I + +    +L               
Sbjct: 6   AVIVGGRSSEHEVSLVSGESVIEGIDTDKYDVKIIVISKEGEWLLAPNTEALKDGSWKES 65

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     L  D  F VLHG +GEDG +Q + EL  IPY   
Sbjct: 66  KVKAVISPDAKDKALLVFNENGSVEKLAIDAVFPVLHGLYGEDGTIQGLFELAGIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLK 134
           G++ASA+ MDK  +KQVV + G+     + V R             +     PY +KP  
Sbjct: 126 GVIASAVGMDKWYTKQVVDTTGIRQARFVPVYRDELKEMDKVIDKIEKAYPYPYFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS G+      + +   LL ++   H  ++L+E+ + G EL C V    D        
Sbjct: 186 AGSSKGVSKAADREGLKKALLLAA--EHDRKILVEETIVGRELECAVLGGFDVKASGVGE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY ++ KY++  S  VL  ++P    +E++  A    +A+   G+SR DF  + 
Sbjct: 244 ILAAAEFYDFDAKYNNAESKTVLSPELPEGKTEEIREAAVKIFKALDGYGLSRVDFFLEN 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + ++ + EIN  PG T +S++P +    G   + L+  ++  A
Sbjct: 304 DTNEIVFNEINTLPGFTAISMYPMLWKEQGLDKKALIDELINLA 347


>gi|88800417|ref|ZP_01115982.1| D-alanylalanine synthetase [Reinekea sp. MED297]
 gi|88776864|gb|EAR08074.1| D-alanylalanine synthetase [Reinekea sp. MED297]
          Length = 359

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/350 (22%), Positives = 151/350 (43%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           + ++ GG S+E +VSL S K+   A++   ++   I +      +L              
Sbjct: 7   VGIVFGGRSAEHQVSLQSAKSIIDAIDRTRYEPVLIGITEQGQWLLNDATDFLLNATDPK 66

Query: 48  ------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                         + + D+ F VLHG +GEDG +Q +  L  +
Sbjct: 67  TIELNRQGQPVTLAAGDQRGSVIPTTQSPINAQVDVLFPVLHGPYGEDGSIQGLARLANL 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------MDSQHLISPPYVIK 131
           P   SGIL SA+ MDK  +K+++   G+ V    +V             +  +  P  +K
Sbjct: 127 PCVGSGILGSAVGMDKDIAKRLLIHAGLNVADYEVVRNGQLTEALIERIETRLQYPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+   +  +++   +  ++      ++L+E  V G E+ C V+G+ + + + 
Sbjct: 187 PANMGSSIGVSKAENREALITAVADAA--RFDPKILVEALVVGREIECAVLGNDTPEASV 244

Query: 192 IA----VPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                      FY Y+ KY   +     +PA I  +  + ++ ++      + CRG++R 
Sbjct: 245 CGEIAANQTHAFYDYDAKYIDADGAVLSIPAAISDEASERIREISKQVFTTLECRGLTRV 304

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D        +V   E+N  PG T +S++P++  ++G  + +L+  +++ A
Sbjct: 305 DVFLTDA-GEVVINEVNTIPGFTKISMYPKLWEHSGLPYPKLIDRLIQLA 353


>gi|284028771|ref|YP_003378702.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283808064|gb|ADB29903.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 323

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 94/321 (29%), Positives = 148/321 (46%), Gaps = 25/321 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-------PDL 53
           +AV+ GG S E +VSL+SG+  A A  + G  V  + ++          +        D+
Sbjct: 3   VAVISGGASPEHDVSLASGQGIARAAAELGHTVLCLVIEPDGTWRDGQHEAIELLQFCDV 62

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
               LHG  GEDG++Q  L+ L +PY  SG+ ASA+ +DK  +K V+ + G+PV P I +
Sbjct: 63  VVPALHGQGGEDGVIQGFLQQLGVPYVGSGVAASAVGLDKHLTKAVLRAHGLPVAPGITL 122

Query: 114 NRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                           +  I  P  +KP  GGSS G+  +     +   +  ++      
Sbjct: 123 RGADLADPESVLQRLKEASIDLPVFVKPGNGGSSFGVTRVTDSAELGRAVADAAGL--DS 180

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAK 218
           Q+L+EQ + G E+   VM      +         + P   F+    KY+   +  V+PA 
Sbjct: 181 QVLVEQEIRGREIDLAVMEFPDGRIEAGPALEIHSDPARPFFDTTAKYAGAGTRFVVPAP 240

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   +   ++R A    Q +GC G++R DF   P   +    E+N  PG TP S FP M 
Sbjct: 241 LDPALAASLRRTAVEVFQTLGCAGLARVDFFV-PADGQPVVNEVNTFPGFTPASQFPRMW 299

Query: 279 AYAGYSFRELLLWMVEDASCL 299
           A AG S+ EL+  ++E A   
Sbjct: 300 AAAGMSYPELVHNLLETARAR 320


>gi|220912996|ref|YP_002488305.1| D-alanyl-alanine synthetase A [Arthrobacter chlorophenolicus A6]
 gi|254767718|sp|B8HAC4|DDL_ARTCA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|219859874|gb|ACL40216.1| D-alanine/D-alanine ligase [Arthrobacter chlorophenolicus A6]
          Length = 382

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/359 (26%), Positives = 145/359 (40%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A+    + V  I + +S   VLA             
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAINKDKYDVIPIGIAKSGQWVLAGGDTAQWSLAGKA 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVAPSEQTVTLAEIGGEHQLIVAAPNEVPQELGTVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            +  Y  +G+LASA+ MDK   K V  S G+ V P + V                  +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHFMKVVFESAGLHVGPYVAVTDRQWQKDPEAVRKQVDRLGF 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +   + +   + ++    H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKVDSLEGLDAAIEEAR--RHDLKLVIEAGIVGREIECAVLEGRG 256

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
            D    ++P     +         +             PA IP +    V+ LA  A  A
Sbjct: 257 TDAPRTSLPGEISVAGGGHEFYDFNAKYVEDDAASLSCPADIPDEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P    +   EIN  PG TP S++P+M A +G  + EL+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTP-DGDLIINEINTMPGFTPKSMYPQMWAKSGLGYAELIDELIHLA 374


>gi|15903558|ref|NP_359108.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae R6]
 gi|116516832|ref|YP_816940.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae D39]
 gi|32171386|sp|Q8DNV5|DDL_STRR6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122278214|sp|Q04J98|DDL_STRP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|15459177|gb|AAL00319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae R6]
 gi|116077408|gb|ABJ55128.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae D39]
          Length = 347

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|331698554|ref|YP_004334793.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326953243|gb|AEA26940.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 365

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 152/356 (42%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  + L+   F V  + +      VL    P         
Sbjct: 8   VAVVFGGRSSEHTISCVSAGSVLAHLDRDRFDVVPVGITPDGAWVLGTDDPARLRIDGRT 67

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F VLHG FGEDG +Q + E+
Sbjct: 68  LPVVDGTGAALALPGDPTRGGLVRLDRDRAGEVFSGVDVVFPVLHGPFGEDGTIQGLFEM 127

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVI 130
             +PY  SG+LASA  MDK  +K+++++ G+ V   +++   T       Q  +  P  +
Sbjct: 128 AGLPYVGSGVLASAAGMDKEFTKKLLAAEGLAVGSLVVLRPGTQSLTAAQQERLGLPVFV 187

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---- 186
           KP + GSS+GI  +     +   +  +    H  ++L+E  + G E+ CGV+        
Sbjct: 188 KPARAGSSVGITRVTSWDRLDEAVAAAR--VHDPKVLVEAAIVGREVECGVLEYPDGTVR 245

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +    ++FY ++ KY        +PAK+  D+ + V+  A  A +A+ C+G+
Sbjct: 246 ASLPAEIRLVSGSAEFYDFDAKYLDDACEFDIPAKLDDDVTERVRDQAVAAFRALDCQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            E+N  PG TP+S++P M A  G  +  LL  +V+ A   
Sbjct: 306 ARVDFFV-GDDGAPVVNEVNTMPGFTPISMYPRMWAETGVDYPTLLATLVDTALAR 360


>gi|81427664|ref|YP_394661.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
 gi|123564944|sp|Q38ZM8|DDL_LACSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78609303|emb|CAI54349.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Lactobacillus sakei subsp. sakei 23K]
          Length = 350

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 156/342 (45%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S+ER VSL+SG     AL+  G  V+ +D                       
Sbjct: 3   IVVLAGGRSTERNVSLTSGHKITHALQTKGHDVAFVDLFLGNELKDGATIDSLYSSDPVE 62

Query: 38  ----VDRSVG--LVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILE 73
               +D  V     +  L+                   D+ F  LHG  GE+G VQA+L+
Sbjct: 63  KDYDIDDEVLTDDDINKLREDGSTQLFGPNVLEICKTADIVFLALHGGDGENGKVQAVLD 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           + EIPYT S  LA+ ++M K  SK+++    +P    +   R     +     P V+KP 
Sbjct: 123 VFEIPYTGSDTLAAGITMSKKVSKEILLFNNIPTARFVAAYRHQPMPEMPFEYPVVVKPS 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  ++  +  +   +  +      ++ LIE+++ G E + GV+ +  L   EI 
Sbjct: 183 NGGSSVGTHIVHNEAELKPAVEDAL--RFDNEALIEEFIKGREFSLGVINEQPLPAIEIE 240

Query: 194 VPKSDF-YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           V    + + ++    +       P  +P D+++ ++++A  A  A+G    +R DF + P
Sbjct: 241 VNDGWYDFEHKFVTGNTTKFVTPPNNLPDDVHEAMKQMALDAMHALGLTNYARIDFFWSP 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +  ++ +E N  PGMTP+S+ P+ A   G S+ +L   +V 
Sbjct: 301 ETG-LYVIEGNTLPGMTPLSLIPQEAEVLGISYPDLCEMIVN 341


>gi|117928793|ref|YP_873344.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649256|gb|ABK53358.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 377

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 161/360 (44%), Gaps = 63/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  +     +AL  AG+ V  I + R    VL    P         
Sbjct: 17  VAVVFGGRSTEHAISCLTAGGVMTALTAAGYDVCAIGITRDGRWVLPPADPAPLTAKDGR 76

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+AF VLHG FGEDG +Q + E+
Sbjct: 77  LPEVDASHPPVVVVPDPADPGLFVRDVSGRLRSLGRIDVAFPVLHGPFGEDGTIQGLFEM 136

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
             IPY  SG+ ASA +MDK   K +    G+P  P ++V      +           +  
Sbjct: 137 AGIPYVGSGVFASAAAMDKQFMKVLFVGAGLPDVPHVVVTPDEWRTDPAAVRESVASLGF 196

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP +GGSS+ +  + K   +   + ++       ++L+E+ +DG E+  GV+ D  
Sbjct: 197 PVFVKPARGGSSVAVTKVHKPADVDEAIERAREV--DPKVLVERAIDGREIEVGVLDDVH 254

Query: 187 LDVTEIAVPKSD------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
               +++VP         FY +E KY    +   +PA +P  + + V R A +A++A+GC
Sbjct: 255 GGAPKVSVPAEILVRGREFYDFEAKYLDQGTVITIPASLPPAVLQTVNRYAVIAYRALGC 314

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DF     + +VF  E+N  PG TP S+FP +    G  +  L+ ++V+ A   R
Sbjct: 315 EGLARVDFFVTA-TGEVFVNELNTMPGFTPTSVFPRVWQATGLEYPALVDYLVQLALRRR 373


>gi|313680822|ref|YP_004058561.1| d-alanine--d-alanine ligase [Oceanithermus profundus DSM 14977]
 gi|313153537|gb|ADR37388.1| D-alanine--D-alanine ligase [Oceanithermus profundus DSM 14977]
          Length = 323

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 159/321 (49%), Gaps = 34/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           ++ GG S E EVSL S +    AL    F      + +    +L  L             
Sbjct: 8   LVAGGRSGEHEVSLQSAQGVLEALP---FDADPAVIAKDGRWLLGRLALDAIEAGRAPRG 64

Query: 50  -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                        D+ F +LHG +GEDG +Q   E+L +PY  + + ASA+ MDK  SK+
Sbjct: 65  DHPFPPPVAWRDYDVVFPLLHGRWGEDGTIQGFFEMLGVPYVGADVTASAVCMDKDLSKR 124

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +++  G+PV P  ++ +        + PP+ +KP + GSS+GI  +++   +   L ++ 
Sbjct: 125 ILAQAGLPVVPWEVLRKGEPVFVG-LEPPFFVKPARAGSSVGIAKVRRYAELRPALDEAF 183

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              H D+++IEQ V G+   E+      +A   V      +++FY Y  KY++  +   +
Sbjct: 184 --RHDDKVVIEQAVPGVRELEVALLGNVEAEASVVGEVRYQAEFYDYATKYTAGAAELDI 241

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ +A  A++ +G RG++R DF     S +++  E+N  PG TP S++P
Sbjct: 242 PAALDPGTQETVQEMAVRAYRVLGVRGMARVDFFL-AESGEIYLNELNTIPGFTPFSMYP 300

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++   +G  + ELL  +VE A
Sbjct: 301 KLWQASGLPYPELLTRLVELA 321


>gi|256824924|ref|YP_003148884.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
 gi|256688317|gb|ACV06119.1| D-alanine--D-alanine ligase [Kytococcus sedentarius DSM 20547]
          Length = 376

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 87/358 (24%), Positives = 153/358 (42%), Gaps = 65/358 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS ++  +  +A++   ++V  I + R    V++   P         
Sbjct: 14  VAVVFGGRSSEHPVSCATAASVMAAIDSTKWEVVPIGITREGQWVVSTATPEELAISAGH 73

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LE+
Sbjct: 74  IPEVAGGDEHVIVPLGSAQTDLQVVRQGLPPELLGEVDVVFPLLHGPFGEDGTLQGLLEM 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            ++ Y   G+ +SA+ MDK   K +  + G+ V P  ++      +           +  
Sbjct: 134 ADLRYVGCGVASSAMMMDKHHMKVIFEAAGLEVGPYRVITDRMWRADRQQALASVEGLEL 193

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +     +   +  +    H  ++++EQ +DG EL C V+    
Sbjct: 194 PVFVKPARAGSSMGITRVDDLADLEQAVEAAR--EHDLKVVVEQGIDGRELECAVLDGHG 251

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVL--------PAKIPLDIYKEVQRLAFLAHQAI 238
            +    +       S    +    + ++         PA+ P  + +E++RLA  A  A 
Sbjct: 252 AEPPRASTVGEIVVSGGHGFYDFEAKYLDESSTTLSAPAEAPEQVIEEIRRLAVHAFDAA 311

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C G++R DF   P   ++   EIN  PG TP S++P + A +G S+ EL+  ++  A
Sbjct: 312 DCEGLARVDFFVTP-DERILINEINTMPGFTPYSMYPALWAASGISYPELIDELLTLA 368


>gi|256784985|ref|ZP_05523416.1| D-alanyl-alanine synthetase A [Streptomyces lividans TK24]
          Length = 367

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 151/361 (41%), Gaps = 69/361 (19%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
           AV+ GG SSE  +S+ +  A  +A++   + V  I + R     L   +P          
Sbjct: 2   AVVFGGRSSEHGISVVTAGAVLAAIDRTRYDVLPIGITRDGRWALTADEPERMAITERRT 61

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ F VLHG +GEDG +Q +
Sbjct: 62  PDVEELAESTEGGVLLPVDPANREVVYSEPGSVPKALGEVDVVFPVLHGPYGEDGTLQGL 121

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------D 119
           LEL  +PY  +G+LASA+  DK   K V +S G+ V P  ++                 D
Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKAVFTSYGLKVGPYAVIRPREWEQDRSGARKKIVD 181

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ C
Sbjct: 182 FAGEHGWPLFVKPARAGSSIGITKVDDLAGLDEAIEEAR--RHDPKILVEAALRGREIEC 239

Query: 180 GV----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           GV     G  +    EI  P    Y         ++  ++PA +  +   EVQRLA  A 
Sbjct: 240 GVLEFEDGPRASVPAEIPPPSEHAYYDFEAKYIDSTPGIVPAPLTAEETAEVQRLAVAAF 299

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A  C G+ R+DF       +    EIN  PG TP+S++P+M   +G S+ EL+  +V+ 
Sbjct: 300 DAASCEGLVRADFFLTE-DDEFVINEINTMPGFTPISMYPQMWQASGVSYPELVDRLVQA 358

Query: 296 A 296
           A
Sbjct: 359 A 359


>gi|238784567|ref|ZP_04628574.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
 gi|238714533|gb|EEQ06538.1| D-alanine--D-alanine ligase [Yersinia bercovieri ATCC 43970]
          Length = 289

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 150/291 (51%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGIDTKEFPVTQLKAQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125
           L +PYT SG++ASAL+MDK+R+K V  +  +P+ P + +NR   +             + 
Sbjct: 62  LGLPYTGSGVMASALTMDKLRTKLVWQALDLPISPYVALNRQQFETLSSEELAARVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  +     +   L+++    H   +LIE+++ G E T G++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVEAF--RHDTDVLIEKWLSGPEFTVGILGDD 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I VP    Y YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQVPGVF-YDYEAKYLSDETQYFCPSGLSTELEQQLAALALRAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQHGLSFSQLVARILTLA 288


>gi|291524420|emb|CBK90007.1| D-alanine--D-alanine ligase [Eubacterium rectale DSM 17629]
          Length = 351

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 3   IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 62

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 63  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T         ++ P V
Sbjct: 123 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L  
Sbjct: 183 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 240 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 300 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 343


>gi|238925283|ref|YP_002938800.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876959|gb|ACR76666.1| D-alanine--D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 369

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 109/345 (31%), Positives = 166/345 (48%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----DRSVGLV---------- 45
           + VL GG+S+ER+VS  +G   A AL++ G KV  +DV     DR   L           
Sbjct: 21  IVVLAGGLSTERDVSFKTGSMVAKALKENGHKVILLDVFMGYSDREEDLTGIFDRADEIS 80

Query: 46  ------------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAIL 72
                       LA +K                      D+ F  LHG  GE+G +QA  
Sbjct: 81  VQVSDIPTEAPDLAKVKASRKDQSPCFFGPNVIKMCQMADIVFMALHGENGENGKIQAAF 140

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYV 129
           +L  + YT S  L+SA++M+K  SKQ   + G+P    I + R T         ++ P V
Sbjct: 141 DLFGVKYTGSDYLSSAIAMNKETSKQFFLANGIPTPKGISMTRATRQDDITKLDLTLPCV 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++        L  +  W   ++L+IE++V G E + GV+   +L  
Sbjct: 201 VKPCCGGSSIGVTIVRDAAEFKAALDDAFKWE--NELVIEEFVQGREFSVGVIEGKAL-P 257

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                PK  FY Y+ KY + ++    PA++P  + K++Q  A    + IG    SRSDFL
Sbjct: 258 IIEIAPKEGFYDYKNKYKAGSTVETCPAELPEQVTKDMQHYAEEVARVIGLDTYSRSDFL 317

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +    ++F LE N  PGMTP S+ P+ AA  G SF +L   +++
Sbjct: 318 LNDK-NEMFCLEANTLPGMTPTSLLPQEAAVIGMSFNQLCEHLID 361


>gi|253577485|ref|ZP_04854799.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
 gi|251843104|gb|EES71138.1| D-alanine-D-alanine ligase [Paenibacillus sp. oral taxon 786 str.
           D14]
          Length = 366

 Score =  164 bits (414), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 153/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49
           + ++ GG S E EVSL +  A + A     +++    +D+                L  L
Sbjct: 10  VGLIYGGKSGEHEVSLQTAFAVSKAFNFDKYELLPFYIDKQGKWKVGEKLHAPFAALEEL 69

Query: 50  K-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           K                          D+ F +LHG  GEDG +Q + E+ ++PY  +G+
Sbjct: 70  KLEESKGDTAAAMGLLFSKLSTGQSEIDVVFPLLHGTNGEDGTIQGLFEMADLPYVGAGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKG 135
           LASA  MDK+  K++ +  G+  C          +          +  +  P  +KP   
Sbjct: 130 LASAAGMDKVIMKKLFAEAGLEQCAYCYFTASEWERSSHTLIQSIEEKLGYPCFVKPANL 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--A 193
           GSS+GI   +  + +   +  +    +  ++++E++VD  E+  GV+G+     +     
Sbjct: 190 GSSVGISKARNREELLSSVALAF--RYDLKVIVEEFVDAREVEVGVLGNDEPLASVPGEI 247

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V   ++Y Y+ KY    S  ++PA I  ++ + ++ LA  A +AI   G+ R+DF     
Sbjct: 248 VSSGEYYDYQAKYLDGKSQMLIPAPIDTELAERIRELAVKAFKAIAGSGLCRADFFVRKS 307

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             K++  E+N  PG TP S++P +    G ++  LL  ++E A
Sbjct: 308 DHKIWINEVNTMPGFTPFSMYPLLWRETGVAYEVLLDRLIELA 350


>gi|195952517|ref|YP_002120807.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
 gi|195932129|gb|ACG56829.1| D-alanine/D-alanine ligase [Hydrogenobaculum sp. Y04AAS1]
          Length = 288

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 78/294 (26%), Positives = 135/294 (45%), Gaps = 9/294 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG S E+E++L   KA   +L+  G+ V  +++D+ +   L    P+  F + HG
Sbjct: 3   ITVITGGDSLEKEIALKGAKAVEESLKRLGYDVDVLEIDKDLCFKLKQTNPEKVFIIAHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG VQ +L++L IPY  S    SA+ MDK  SKQ+     +            +  
Sbjct: 63  TYGEDGRVQGLLDILGIPYIGSNTKTSAICMDKDFSKQIFEQNHIKTPKWKAYKPKDVID 122

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +   P + KP   GSS G+  ++ D+S+             D+L++E++++G ++T G
Sbjct: 123 WSI--FPCIAKPASAGSSFGLFKVEDDKSLKEAAQNIFKI--DDKLIVEEFIEGKDMTVG 178

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                 L+  EI         Y+ +                 I K+++ +A         
Sbjct: 179 YFKGFILEPIEII---PKKGIYDFESKYTKGMSEYIFVEDESIAKKLKEIASKLVDIFEL 235

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + ++R DF        V+ LEIN  PG+T +S+ P     AG SF +++  +V 
Sbjct: 236 KDMARIDFRVKGKD--VYTLEINTIPGLTELSLLPMALKKAGISFNKMVEMLVN 287


>gi|332138295|pdb|3RFC|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase A From
           Xanthomonas Oryzae Pathovar Oryzae With Adp
          Length = 384

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 23  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 82

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 83  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 142

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T            +  P  +K
Sbjct: 143 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 202

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V +   +       + +  +  ++L+E  V G E+ C V+G+A    + 
Sbjct: 203 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 260

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 261 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 320

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 321 FLCA-DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 367


>gi|256032535|pdb|3E5N|A Chain A, Crystal Strucutre Of D-Alanine-D-Alanine Ligase From
           Xanthomonas Oryzae Pv. Oryzae Kacc10331
          Length = 386

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 83/348 (23%), Positives = 150/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     +              
Sbjct: 25  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPA 84

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG  GEDG +Q +L +  +
Sbjct: 85  RIALHRSGRGVALLPGAQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANL 144

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+  SG+L SA++MDK  +K+V+    + V P +  +R T            +  P  +K
Sbjct: 145 PFVGSGVLGSAVAMDKDMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVK 204

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V +   +       + +  +  ++L+E  V G E+ C V+G+A    + 
Sbjct: 205 PANQGSSVG--VSQVRTADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASV 262

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V+PA I     + +Q++A  A+QA+GC G++R D 
Sbjct: 263 CGEVVVHDAFYSYATKYISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDV 322

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 323 FLCA-DGRIVINEVNTLPGFTRISVYPKLWQASGLDYRGLITRLIELA 369


>gi|242371574|ref|ZP_04817148.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
 gi|242350726|gb|EES42327.1| D-alanyl-alanine synthetase A [Staphylococcus epidermidis
           M23864:W1]
          Length = 361

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 81/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS+ + +   +A+    +++  I +                      
Sbjct: 11  ICIVFGGKSAEHDVSILTAQNVLNAINKDQYQIDIIYITNEGEWKKKENITEEIKNTDEL 70

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 71  VLNDVEAGEISQLLSKGSTGRSYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +             ++ P  +KP   GSS+
Sbjct: 131 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYENNIIKLVNDKLTYPVFVKPANLGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 191 GISKCNNEKELKSGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA++  D+   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 249 AFYDYKSKYKDGKVRLQIPAELDQDVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 308 YINETNAMPGFTSFSMYPSLWENMGLSYPDLIAKLIDLA 346


>gi|163814801|ref|ZP_02206190.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
 gi|158450436|gb|EDP27431.1| hypothetical protein COPEUT_00952 [Coprococcus eutactus ATCC 27759]
          Length = 350

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/343 (26%), Positives = 156/343 (45%), Gaps = 50/343 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            V+ GG SSE EVS  S +  A A++   + ++ + + +    +                
Sbjct: 7   VVIFGGRSSEHEVSCISVQTVAKAVDTEKYNMTLVGITKEGKWLRADNIESIADGSWRDG 66

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +   + D+ F VLHG +GEDG +Q + E+ +IPY   G+
Sbjct: 67  KVTAVISPDTTKELLILNGDKVERQRVDVIFPVLHGMYGEDGTIQGLFEMADIPYVGCGV 126

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGG 136
           LASA SMDK  +K +V + GV     + V        +      +  +  P  +KP K G
Sbjct: 127 LASAASMDKFYTKIIVDNVGVRQAKFVPVLAEDFGDLDAAMDRVETGLDYPVFVKPSKAG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIA 193
           SS G+      QS+   L ++      +++L+E+ + G EL CG      +         
Sbjct: 187 SSKGVNKAVDRQSLKSALEEAV--KFDNKILVEETIVGRELECGVLGYKDNTQASGVGEI 244

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  ++FY ++ KY++  S  V+ A IP +I  E++  A    +A+   G+SR DF  +  
Sbjct: 245 LAAAEFYDFDAKYNNAESKTVIGADIPAEIEAEIREDAVKIFRALDGFGLSRVDFFLEKG 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + KV + EIN  PG T +S++P +    GY   +L+  ++E A
Sbjct: 305 TNKVVFNEINTLPGFTGISMYPMLWNAKGYDIGKLVTTLIEMA 347


>gi|332978578|gb|EGK15284.1| D-alanine-D-alanine ligase A [Psychrobacter sp. 1501(2011)]
          Length = 384

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 149/346 (43%), Gaps = 51/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+++GG S E  VS++SG +  + ++   F V  I +D                     
Sbjct: 14  VAIILGGQSPEHAVSINSGCSLLNHIDRNRFNVEAIYIDIEGRWWQYPHQESYTSDIFTI 73

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                    L  +  D+ F+++HG+ GEDG +Q + E+  +PY 
Sbjct: 74  ETAQAIAQRCVIIPDETYQLVKLPSLEKIACDVCFSIVHGSTGEDGKLQGVFEVANLPYV 133

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--------SQHLISPPYVIKP 132
            + +  SA+ M+K+  K ++++  +P     +V+  +              +  P  +KP
Sbjct: 134 GTDVAGSAVGMNKVIMKDILNANDIPTANYRIVDARSWKADAASLIEDARSLKLPIFVKP 193

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190
              GSS+GI  +     +   +  +  ++    L+ E      EL   V    +  +   
Sbjct: 194 ANTGSSVGISKVDSYDDLQSAIEVALKFDP-QVLVEEGITPARELEVAVLGNHNPEVSCI 252

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               P   FY Y  KY +  +    PA +  ++  +++ +A   ++ +G +G+SR DFL 
Sbjct: 253 GEINPPDGFYDYASKYLNDTAKLSYPATVAPEVEAKMRDIAVKTYKVLGLKGLSRVDFLL 312

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  + + + +E+N  PG T +S++P++   +G  +  L+  ++E A
Sbjct: 313 DQATNEPYIIEVNTLPGFTNISMYPKLWDVSGKPYSTLITDLIELA 358


>gi|291562104|emb|CBL40920.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SS3/4]
          Length = 353

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 152/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG SSE  VS  S +  A+ + +  + V  + +      V               
Sbjct: 6   IVVLFGGQSSEHVVSCMSVQNVAANINEEKYNVILVGITEDGHWVKVDSLSQVKDDTWRE 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG +GEDG VQ ILEL +IPY   
Sbjct: 66  SKAGAVLSPDAKEKCLIVTENGSFEKIPVDVVFPVLHGLYGEDGTVQGILELAKIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K++VS  G+     + V +             +  I  P  +KP  
Sbjct: 126 GVLASAVSMDKLSTKRMVSGLGICQAAYVSVMKAELKDMDAVISKIEKEIPYPVFVKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191
            GSS G+      + +   L +++  ++  ++L+E+ + G E+ CGV GD          
Sbjct: 186 AGSSRGVTRADNREELITGLKEAA--DNDRRILVEEMIVGREIECGVFGDGDSTKASGVG 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY +  S  V+  ++P    + V+  A     A+   G+SR DF   
Sbjct: 244 EILAAAEFYDFDAKYYNAESKTVVDPELPDGATERVREAAVKIFNAVDGYGLSRVDFFV- 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                V + EIN  PG T +S++P +    G   R+L+  +++ A
Sbjct: 303 KADGTVVFNEINTLPGFTAISMYPMLWEARGVDKRQLIDDLIDHA 347


>gi|239944584|ref|ZP_04696521.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
          Length = 367

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 97/364 (26%), Positives = 149/364 (40%), Gaps = 69/364 (18%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
           AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P          
Sbjct: 2   AVVFGGRSSEHGISVVTAGAVMKAIDRTKYDVLPIGITADGRWALTADEPERMAITDRKV 61

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ F VLHG +GEDG +Q +
Sbjct: 62  PDVDLLTGSAEGSVVLSVDPGSREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQGL 121

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------------ 119
           LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D            
Sbjct: 122 LELSGVPYVGAGVLASAVGQDKEYMKRVFISYGLPVGPYEVVRPREWDNDPAAARKRIVD 181

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P  IKP +GGSS+GI  +     +   + ++    H  + L+E  + G E+ C
Sbjct: 182 FAGEHGWPLFIKPARGGSSMGITKVDDLSGLDAAIEEAR--RHDPKFLVESLLRGREIEC 239

Query: 180 GV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           GV    D         +P    + +         ++T ++PA +  +   EVQRLA  A 
Sbjct: 240 GVLEFEDGPRASVPAEIPPVTAHDFYDFEAKYIDSATGLVPAPLTGEQTAEVQRLAVAAF 299

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+ C G+ R+DF            EIN  PG TP+S++P M   +G S+ EL+  +++ 
Sbjct: 300 DAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVSYPELVDRLIQA 358

Query: 296 ASCL 299
           A   
Sbjct: 359 ALTR 362


>gi|238916547|ref|YP_002930064.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
 gi|238871907|gb|ACR71617.1| D-alanine-D-alanine ligase [Eubacterium eligens ATCC 27750]
          Length = 382

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 160/345 (46%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV----DRSVGLVLAHLKPDL--- 53
           + VL GG S+ER+VSL +G     +L   G + + +D+    D S        K DL   
Sbjct: 42  IVVLAGGTSTERDVSLVTGYRVCESLRRNGHEANMLDIFLGVDDSEVKTFFTEKNDLGEL 101

Query: 54  ---------------------------------------AFNVLHGNFGEDGLVQAILEL 74
                                                   F  LHG+ GEDG VQA  +L
Sbjct: 102 SDNLKKKTADIPAEVKRRTEARESFFGRNVLELCKEADMVFMGLHGSNGEDGKVQATFDL 161

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L I YT +  L+SA+SM K  +K+V+   G+P+   + +++        +  P V+KP  
Sbjct: 162 LGIRYTGTDYLSSAISMSKELAKKVLVPEGIPMPKGVTLHKGHKIEY--VPFPCVVKPCC 219

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ +   ++     L ++   ++ D +L+E++VDG E +  V+   +L V     
Sbjct: 220 GGSSVGVSIAHNEKEFEDALDEAF--SYEDTVLVEEFVDGREFSVAVLDGKALPVI-EIE 276

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P   FY Y+ KY + ++    PA IP DI  ++Q  A    QA G    +R D L D  +
Sbjct: 277 PLEGFYDYKNKYKAGSTKETCPANIPEDIASQMQFWAEKCCQAAGVTTYARVDELLD-KN 335

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +F LEIN  PGMT  S+ P+ AA  G S+ EL   ++E +   
Sbjct: 336 NNIFCLEINTLPGMTDTSLIPQEAAAVGISYDELTEKIIEISLAK 380


>gi|123443414|ref|YP_001007387.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|122090375|emb|CAL13243.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica subsp.
           enterocolitica 8081]
          Length = 366

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDSASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG++ SA+SMDK  +K+++   G+ + P I        N         +  P  IK
Sbjct: 126 PFVGSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIDSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   +   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTA-DNTIIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 350


>gi|291166569|gb|EFE28615.1| D-alanine--D-alanine ligase [Filifactor alocis ATCC 35896]
          Length = 353

 Score =  163 bits (413), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 88/342 (25%), Positives = 159/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A+L GG S E EVS  S K     ++   ++   I +D+                    
Sbjct: 6   IAILFGGKSEEHEVSCRSAKYIFENVDRDKYRPFLIGIDKLGNYYYMKECNIEHLIDCTW 65

Query: 41  ------------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                             ++ L    +  D+ F  LHG  GEDG +Q ++E + IPY   
Sbjct: 66  TDFIETNEVCFSKGDERFTLQLQGEKIVFDVVFPALHGPNGEDGKLQGLMEFVNIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----LISPPYVIKPLKGGS 137
             ++SA+ MDK  +K++V   GV   P +++    +  +       I  P  +KP   GS
Sbjct: 126 NSISSAICMDKEITKRLVGIEGVRQVPYVILYEGVVAEEKLLEMEEIGYPLFVKPANMGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAV 194
           S+G+   +  Q +   +  +S   + D++++E+ +D +EL         DA         
Sbjct: 186 SVGVSKAENQQELLQAIRVAS--KYDDKVIVEKGIDALELEIAALGDGKDAYFSTVGCIK 243

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY Y+ KY + ++   +PA I  +   E++ +A  A+ A+ C G+SR DF  D  +
Sbjct: 244 PRDIFYDYDSKYLTNDADFYIPAPISFEKETELREMARKAYTAMLCEGLSRIDFFMDKET 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++++ EIN  PG T +S++P++  Y G   +EL+  +++ A
Sbjct: 304 QEIYFNEINTMPGFTAISLYPQLMDYDGVGAKELIGRLIDYA 345


>gi|238921591|ref|YP_002935106.1| hypothetical protein NT01EI_3744 [Edwardsiella ictaluri 93-146]
 gi|238871160|gb|ACR70871.1| conserved hypothetical protein [Edwardsiella ictaluri 93-146]
          Length = 390

 Score =  163 bits (412), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + ++ GG S E EVSL S K    A++ + F V+ I +D+     L   +          
Sbjct: 29  VGIVFGGQSCEHEVSLQSAKNIVEAIDQSRFDVTLIGIDKQGYWHLCSGQDYLNHAHDPQ 88

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L++L +
Sbjct: 89  HIALNHSERRLAVIPGAIQGQLIDSVSGEILPSLDVIFPIVHGTLGEDGCLQGMLKMLNL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S ++ SA  MDK   K+++   G+P+ P +        +      +  +     +K
Sbjct: 149 PFVGSDVIGSAACMDKEVCKRLLRDAGLPITPFVTLTRATQTHYNYETLRSQLGETLFVK 208

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +       ++++E+ V G E+ C ++G+     + 
Sbjct: 209 PANQGSSVGVNKVRNADEYHRAIADAL--RFDHKVIVERGVIGHEIECAILGNEVAQASV 266

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +++       PA +  ++ + V++ A  A QA+ CRG++R D 
Sbjct: 267 CGEIVLHSDFYSYDSKYISAQDAQVVVPAAMAPEVSERVRQTALRAFQALECRGLARVDV 326

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +G S++ L+  ++E A
Sbjct: 327 FVTAE-NEVIINEINTLPGFTNISMYPKLWQASGISYQALITQLIELA 373


>gi|330470823|ref|YP_004408566.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328813794|gb|AEB47966.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 320

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 146/313 (46%), Gaps = 16/313 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG+    AL   G +    D D ++   LA   PD     LHG
Sbjct: 11  VVVLAGGLSYERDVSLRSGRRVLDALRSVGVEAELRDADVALLPALAADPPDAVVIALHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-- 118
             GEDG ++ +L+L  +PY      AS L+ DK  +K V+   G+     + +       
Sbjct: 71  ATGEDGSLRGVLDLCGVPYVGCDARASRLAWDKPSAKAVLREAGIATPDWVALPHDRFSE 130

Query: 119 --------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS LG  V++   ++P  +     + +    L+E+
Sbjct: 131 LGAVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDAAALPAAM--VGCFAYDPTALVER 188

Query: 171 YVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           YV G+++   V+              VP++  Y Y  +Y++  +T   PA++   + ++V
Sbjct: 189 YVSGMDVAVSVIDLGDGPQALPPVEIVPRNGVYDYAARYTAGRTTWHTPARLEPAVAEKV 248

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F  
Sbjct: 249 GEVALAAHTALGLRDLSRVDLIVDSA-GLPHVLEVNVSPGMTETSLLPLAVQAAGLDFGR 307

Query: 288 LLLWMVEDASCLR 300
           ++  +V  A   R
Sbjct: 308 VIGSLVARAVTRR 320


>gi|312143948|ref|YP_003995394.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
 gi|311904599|gb|ADQ15040.1| D-alanine/D-alanine ligase [Halanaerobium sp. 'sapolanicus']
          Length = 349

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 155/340 (45%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S+E EVS+ S ++  + L+ + + +  I + ++                   
Sbjct: 8   IALIYGGRSAEHEVSILSTRSIYNNLDKSKYNIFPIAISKTGRWFETEKSLEYLNSETNS 67

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 DLAF VLHG +GEDG +Q   E+L+IPY    + +SA+
Sbjct: 68  IPDQADRKLFPLEVIDFLQKNIDLAFPVLHGPYGEDGKIQGFFEILDIPYVGCNLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----------PYVIKPLKGGSSL 139
           SMDK   K++ +   +P     ++ +     +               P+ +KP   GSS+
Sbjct: 128 SMDKELMKKLFAYHDIPQTKFQVLKKSQYKVKRKKEFYEELTKKLGLPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPK 196
           GI  + + ++    +  +    H ++++IE +V   E+   ++   +          + +
Sbjct: 188 GITKVNEKKNFAEAINSAF--EHDNKIIIENFVKAREIEASIISLDNEIRVSIPGEIIAQ 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            DFY Y+ KY    +  V+PA+I   I KE++ LA  A  A+G   ++R DF     +  
Sbjct: 246 HDFYDYKAKYQDSKTRLVIPAEIDDKIKKEIKLLAVKAFNAVGGDALARIDFFLTE-NND 304

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S++P +   +G+ +++LL  M+E A
Sbjct: 305 LLVNEINTMPGFTQFSMYPLLFKESGFPYQKLLDQMIEQA 344


>gi|306835963|ref|ZP_07468955.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
 gi|304568129|gb|EFM43702.1| D-alanine-D-alanine ligase [Corynebacterium accolens ATCC 49726]
          Length = 355

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 153/348 (43%), Gaps = 56/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S+E  VS  S  A    L+   F+V  I + R         +          
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFEVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + EL  IPY
Sbjct: 67  EVKHGTELALSADPTRKGEIRTISDGSLYAHVDVIFPILHGPYGEDGTMQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+++S+ G+PV P ++V   T  +      +  P   KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTAEEKDRLGLPVFAKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +      P  +  +      D++L+E  + G E+  GV+      +       
Sbjct: 187 SSIGVSKVSDWADFPEAVRIALED--DDKILVEPEIVGREVEVGVLQYPDGRLIASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR DF
Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A
Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPTLLEVLIASA 350


>gi|237785790|ref|YP_002906495.1| D-alanyl-alanine synthetase A [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237758702|gb|ACR17952.1| D-alanine-D-alanine ligase [Corynebacterium kroppenstedtii DSM
           44385]
          Length = 412

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 93/353 (26%), Positives = 154/353 (43%), Gaps = 61/353 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  A  S L+   ++V  I + R    V+    P         
Sbjct: 57  VAVVYGGRSSEHSISCVSAGAVISHLDPDRYQVVPIGITRDGRWVVGSSDPKELSIRERQ 116

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F VLHG FGEDG VQ + ++
Sbjct: 117 LPEVKAGTSLSLSLDPQHAGRFVYADGPDVGQVFADVDVIFPVLHGGFGEDGTVQGLFDM 176

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIK 131
             +PY  +G+LASA SMDK  +K++ ++ G+P+   +        T + ++L+  P  +K
Sbjct: 177 ASVPYVGAGVLASAASMDKEFTKKLAAAEGLPIGRDVVLRETRSLTEEEKNLLGLPVFVK 236

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------ 185
           P +GGSS+GI  + +   +   L  +    H  ++++E  + G E+ CGV+         
Sbjct: 237 PARGGSSIGISKVDQWDELDDALDLAR--QHDSKVIVESMIVGTEVECGVLQRPDGTVEA 294

Query: 186 --SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                + +       FY ++ KY     T  +P     D  + ++ LA     A+ C G+
Sbjct: 295 SLPAQLEDTESGDEGFYGFDTKYLDNVITAQIPPHFDDDTIRHIRELAVETFHALDCEGL 354

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF      R     EIN  PG TP+S++P+M    G  + +LL  +++ A
Sbjct: 355 ARIDFFVT--DRGPVLNEINTMPGFTPISMYPQMFGAMGIDYPDLLDLLIQRA 405


>gi|169351724|ref|ZP_02868662.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
 gi|169291946|gb|EDS74079.1| hypothetical protein CLOSPI_02505 [Clostridium spiroforme DSM 1552]
          Length = 346

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 43/337 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAH------------- 48
           VL GG SSE  VS  S  +  + L    + ++ + +D       L H             
Sbjct: 7   VLCGGQSSEHIVSRMSCTSVLNNLNHDKYDITLVGIDLDGKWYRLNHDQDDLSLDSWLDN 66

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       + D+AF VLHG +GEDG +Q + EL +IPY  + +L S++SMDK+ +K
Sbjct: 67  SVEVENVFELLKEHDVAFPVLHGLYGEDGTIQGLFELTKIPYVGARVLCSSVSMDKIYTK 126

Query: 98  QVVSSCGVPV------------------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           +++ +  +P                        +        + I  P  IK  + GSSL
Sbjct: 127 KILDTVKIPQVKSAYVKKRYDNRLVIITKDFEEIYDVEEYIVNEIGMPCFIKASRSGSSL 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G       + +   L  ++ ++    +        +E       D  +      +P  +F
Sbjct: 187 GCYRCDNREDLIGKLEAAAKYDRHIVVEENIDCIELETAVLGNDDVIVSRVGQIMPHGEF 246

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y++E KY    S   +PA +   I ++++  A  A +A+   G+SR DF  D  +  ++ 
Sbjct: 247 YTFESKYEDAESKTCIPALVDEKIQEKIREYAIKAFKAVDGHGLSRVDFFLDKKTNNIYL 306

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            EIN  PG T +S++P++    G S+ +LL  ++E A
Sbjct: 307 NEINTMPGFTKISMYPQLMNDFGISYSDLLDKLIELA 343


>gi|319648705|ref|ZP_08002916.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
 gi|317389124|gb|EFV69940.1| D-alanine-D-alanine ligase [Bacillus sp. BT1B_CT2]
          Length = 355

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/343 (25%), Positives = 144/343 (41%), Gaps = 53/343 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------------ 45
           + GG S+E  VSL +  A   AL+   F +  I +      V                  
Sbjct: 2   VYGGKSAEHNVSLQTALAVTKALDTEKFDIHPIYITEKGEWVRGPQLTEPVSNVKMLQFE 61

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG +Q +LELL +PY  +G+
Sbjct: 62  QTGQTFSPAVLNRDMFPGEADAKEDSIDVVFPLLHGPNGEDGTIQGMLELLNVPYVGNGV 121

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LAS+  MDK+  K + +  G+     +   + T            +  +  P  +KP   
Sbjct: 122 LASSAGMDKVVMKHLFAQAGLDQAKYVSFLKKTWSQSKEECYAQVEGELGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIA 193
           GSS+GI   +  + +      +    +  ++++E+ V G E+        +    V    
Sbjct: 182 GSSVGISKCRSREELDQAFELAF--QYDRKIVVEEGVIGREIELGVLGNDEPVCSVAGEI 239

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            PK DFY Y+ KY   ++  ++PA +  D Y+ ++ +A  A QAI   G+ R+DF     
Sbjct: 240 APKKDFYDYKAKYEDGDTDLIIPASLTEDEYETMRSMAVKAFQAIDGSGLVRADFFLTNE 299

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V   E+N  PG TP S+FP +   +G  + EL+  +V  A
Sbjct: 300 -GRVLINEVNTMPGFTPFSMFPLLWKQSGVEYAELIEKLVALA 341


>gi|257462519|ref|ZP_05626931.1| D-alanine--D-alanine ligase [Fusobacterium sp. D12]
 gi|317060174|ref|ZP_07924659.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
 gi|313685850|gb|EFS22685.1| D-alanine-D-alanine ligase [Fusobacterium sp. D12]
          Length = 288

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 100/297 (33%), Positives = 166/297 (55%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGGISSE+E+S+ SG+A   +L+  G+    + ++ +++       + DLA+  LH
Sbjct: 3   IAVFMGGISSEKEISIRSGEAILESLQRQGYDAYGVVLNEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT S + A A+SM+K      + +  +     I + +   +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSQVTACAISMNK------LLTKKIASFEGIRMAKTYAN 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + + P ++KP + GSS+GI V   +  +   L +          +IE+Y+ G ELT 
Sbjct: 117 IAEIEAYPVMVKPSEDGSSVGIHVCNTEAEVEKALQEI-----SGYAMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    ++ Y YE KY+   S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLHGKALGVLKIIPKAAEIYDYESKYALGGSVHEFPARIAKTAYEEAMLNAVKIHKALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VE+A
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLIPDLATLQGYTFDDITRMLVEEA 286


>gi|116671060|ref|YP_831993.1| D-alanyl-alanine synthetase A [Arthrobacter sp. FB24]
 gi|190359110|sp|A0JXX3|DDL_ARTS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116611169|gb|ABK03893.1| D-alanine--D-alanine ligase [Arthrobacter sp. FB24]
          Length = 382

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/359 (24%), Positives = 140/359 (38%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG SSE  VS  +      A++   + V  I + ++   VL              
Sbjct: 19  VAVLFGGRSSEHAVSCVTAAGVLGAIDYDKYDVIPIGIAKTGQWVLVSGDTRQWSLSASS 78

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 79  LPEVSPSARTVTLAEIGGEHQLIVASPNEVPQELGAVDVVFPLLHGPFGEDGTIQGLLEL 138

Query: 75  LEIPYTHSGILASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISP 126
            +  Y  +G+LASA+ MDK   K V             V     +            +  
Sbjct: 139 SDTRYVGAGVLASAVGMDKHYMKVVFEAAGLQVGPYIAVTDRQWLTDPEAIRKRVDRLGY 198

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSS+GI  +   + +   +  +    H  +L+IE  + G E+ C V+    
Sbjct: 199 PVFVKPARAGSSMGISKVDSLEGLDAAIAAAR--EHDLKLVIEAGIVGREIECAVLEGRG 256

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
            +    ++P     +         +             PA +P +    V+ LA  A  A
Sbjct: 257 TEPPRTSMPGEIAVAPGEHEFYDFNAKYVEDDAASLSCPADLPDEAIARVRELAAAAFDA 316

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G  G+SR DF + P   ++   EIN  PG TP S++P+M A +G  + EL+  ++  A
Sbjct: 317 VGAEGLSRVDFFYTP-DGELIINEINTMPGFTPKSMYPQMWAASGLGYAELIDELIYLA 374


>gi|30020677|ref|NP_832308.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
 gi|39931057|sp|Q81D33|DDLA_BACCR RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|29896229|gb|AAP09509.1| D-alanine--D-alanine ligase [Bacillus cereus ATCC 14579]
          Length = 301

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 150/297 (50%), Gaps = 9/297 (3%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           G +SE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG +GEDG
Sbjct: 6   GYASEKQVSIMTGNEMIAHLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHGKYGEDG 65

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHL 123
            VQ  LE L IPY+ S +L+S++ MDK  SK+++   GV     I    +    +D    
Sbjct: 66  TVQGTLESLGIPYSGSNMLSSSICMDKNISKKILRYEGVETPDWIELTKMEDLNLDELDK 125

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+TC ++ 
Sbjct: 126 LGFPLVVKPNSGGSSVGVKIVYNKNELISMLETVFEW--DSEVVIEKYIKGDEITCSILD 183

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                        ++F+ Y  KY   ++   +  ++P  I + V + +   ++A+ C   
Sbjct: 184 G-KQLPIVSIRHAAEFFDYNAKYDDTSTVEEV-IELPAQIKERVNKASLTCYKALKCSVY 241

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R D +        + +EIN  PGMT  S+ P+ A  AG S+ +LL  ++E +  +R
Sbjct: 242 ARVDMMV--KDGIPYVMEINTLPGMTQSSLLPKSAEAAGISYSKLLDMIIETSLKVR 296


>gi|311031127|ref|ZP_07709217.1| D-alanyl-alanine synthetase A [Bacillus sp. m3-13]
          Length = 356

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 153/339 (45%), Gaps = 48/339 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+E +VSL +  A   A++   F+V  + +  +                     
Sbjct: 7   LLYGGKSAEHQVSLQTALAVTKAIDTDKFEVYPLYITETGEWKRGGLLNGPAESVHQLKL 66

Query: 46  ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F +LHG  GEDG VQ +LELL +PY  +G+LAS+ 
Sbjct: 67  EEGGTTIAPLALTYEEETEQTQTVVFPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASSA 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLG 140
            MDK+  K +    G+P        R   +             +  P  +KP   GSS+G
Sbjct: 127 GMDKVIMKNLFDQAGLPQVGYAHFLRSEWEKAADTTYEKVESELGYPCFVKPANLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKS 197
           I   K  + +     ++   ++  ++++EQ ++G   IE+      +    V     PK+
Sbjct: 187 ISKAKNREELETAFREAF--DYDRKIIVEQGLEGAREIEIGVLGNDEPECSVIGEIAPKT 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY Y+ KY   ++  ++PA+I  DIY++V+ +A  A +AI   G+ R+DF       K+
Sbjct: 245 EFYDYKAKYEDGDTAMIIPAEISEDIYEQVKEMAITAFKAIDGAGLVRADFFLTKE-GKL 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  E+N  PG TP S+FP +  +   S+ +L+  +V  A
Sbjct: 304 YINEVNTMPGFTPFSMFPLLWQHTDVSYPQLIEKLVGYA 342


>gi|318604546|emb|CBY26044.1| D-alanine--D-alanine ligase [Yersinia enterocolitica subsp.
           palearctica Y11]
          Length = 366

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 87/348 (25%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKWHVNDASNYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEHQQLIATDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I        N         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C VMG+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAYEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASL 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      ++PA I   +   ++ +A  A +A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINETGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P   +V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNRVIINEINTLPGFTNISMYPKLWRATGGGSTELITTLIELA 350


>gi|289167463|ref|YP_003445732.1| D-ala,D-ala ligase [Streptococcus mitis B6]
 gi|288907030|emb|CBJ21864.1| D-ala,D-ala ligase [Streptococcus mitis B6]
          Length = 347

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P +       V     + +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKITEVEEKLNYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335


>gi|237798746|ref|ZP_04587207.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021599|gb|EGI01656.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 363

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 156/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        +    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFEEADYLINADDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSASGKQLSLLPGRTGGQFVEVETGQPLPAIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P             D+   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIDVAPFLVLTRGQTIDFADAAAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAGALALGFEFDHKLLIEQGIVGREVECAVLGNFEPQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA +P+D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPADMPVDLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 TEA-RQIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|302185668|ref|ZP_07262341.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           642]
          Length = 363

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFKEAAEQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWHASGMSYAELIHRLIVLA 347


>gi|114766763|ref|ZP_01445700.1| D-alanine--D-alanine ligase [Pelagibaca bermudensis HTCC2601]
 gi|114541020|gb|EAU44077.1| D-alanine--D-alanine ligase [Roseovarius sp. HTCC2601]
          Length = 271

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 121/276 (43%), Positives = 175/276 (63%), Gaps = 8/276 (2%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              G++V+++D  R +   L  L PD+ FN LHG +GEDG VQ +LE + +PYTHSG+LA
Sbjct: 2   RAEGYQVTEVDAGRDLAQRLEALAPDVVFNALHGRWGEDGCVQGLLEWMGLPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK RSK+V  + G+PV  S+L ++  + ++H+++PPYV+KP   GSS+G+ ++++
Sbjct: 62  SAVAMDKERSKEVYRAAGLPVVESVLASKAEISARHMMAPPYVVKPYNEGSSVGVYLVQE 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             + P  + +       D L++E Y  G ELT  VMGD +L VT+I      +Y Y+ KY
Sbjct: 122 GANTPPRIAEDMP----DTLMVETYAPGRELTTTVMGDRALTVTDIIT--EGWYDYDAKY 175

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
               S H LPA +P +I+      A  AH+A+GCRG+SR+DF +D       +  LE N 
Sbjct: 176 KEGGSRHELPADVPAEIFDACLAYALRAHEALGCRGVSRTDFRWDESRGLDGLILLETNT 235

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE A + G SF  L+ WMVEDASC R
Sbjct: 236 QPGMTPTSLVPEQAQHCGMSFGALMRWMVEDASCNR 271


>gi|78779786|ref|YP_397898.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
 gi|123553873|sp|Q319I3|DDL_PROM9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78713285|gb|ABB50462.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9312]
          Length = 355

 Score =  163 bits (412), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 141/343 (41%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E +VS+SS K   +A    +    F V    +++    +           
Sbjct: 9   IGLIFGGYSNEHDVSISSAKTVFNAFNSEINKQRFNVKAFYINKYGDWIDNDISVKILIG 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +     D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIEHKKTKKQELFNQKKINFLDGIEFQNIDIWFPLLHGFNGEDGSIHGLLKFTNKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIK 131
           GIL SAL MDK+  K + S+  +P    +++    +++              ++ P  +K
Sbjct: 129 GILGSALGMDKILMKTIFSNLKIPQVNYLVIQNEDLNNLEVKNKLIIEIIKKLNFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +    ++   L ++   +    +        IE       +       
Sbjct: 189 PSNSGSSLGISKVINKSALLKALEKAWEIDARILVEEGLETREIECGIIGNSELLTSEIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                SD+Y Y+ K  + N+   +PAKI   I K+++ +A  + + +   G +R DF  +
Sbjct: 249 EVEYGSDWYDYDSK-YNSNNKITIPAKIDSKITKQIKEIAIQSCRTLNIFGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 308 KSSNKIFLNEINTIPGFTKKSMFPMLWEASGLNIEQLVAKLVD 350


>gi|307707461|ref|ZP_07643943.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
 gi|307616413|gb|EFN95604.1| D-alanine--D-alanine ligase [Streptococcus mitis NCTC 12261]
          Length = 347

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFNQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDMTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|306829917|ref|ZP_07463104.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
 gi|304427928|gb|EFM31021.1| D-alanine-D-alanine ligase [Streptococcus mitis ATCC 6249]
          Length = 372

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 30  IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 90  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 150 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 210 ENHEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 360


>gi|229829654|ref|ZP_04455723.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
 gi|229791643|gb|EEP27757.1| hypothetical protein GCWU000342_01751 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 102/345 (29%), Positives = 158/345 (45%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VS  SG   A AL   G +V  +DV                      
Sbjct: 20  IVVLAGGLSTERDVSFKSGDMVARALRRKGHQVLLLDVFMGYGDAECDISDIFDRAEEVS 79

Query: 39  ---------DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAIL 72
                       +  + A  K                  D+ F  LHG  GE+G VQA  
Sbjct: 80  VRVEDIPKTAPDIAAIRAGRKDQSKTFFGPNVIAICQAADIVFMALHGADGENGKVQAAF 139

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +L  I YT +  L  A++MDK  +K   ++ G+P    I + +           I  P V
Sbjct: 140 DLFGIQYTGNSYLPCAIAMDKGVAKTFFTAYGIPTPSGITLEKEERQDAAKKAKIHYPCV 199

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ +++    +   L ++  W   D+++IE+Y+ G E + GVM D  L V
Sbjct: 200 VKPACGGSSVGVTIVEDPGRLEEALDEAFYWE--DEVVIEEYIKGREFSVGVMEDQVLPV 257

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                P   FY ++ KY++ ++    PA +P +  + +Q+ A    +A+G    SR DFL
Sbjct: 258 I-EIAPIRGFYDFKNKYAAGSAVETCPADLPQETSRLMQKYAADVCKALGLTTYSRQDFL 316

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            D  S ++F LE N  PGMTP S+ P+  A  G S+ +L   ++ 
Sbjct: 317 LDE-SGRIFCLEANTLPGMTPTSLLPQEEAVLGMSYDDLCEEIIR 360


>gi|317455526|pdb|3Q1K|A Chain A, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455527|pdb|3Q1K|B Chain B, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455528|pdb|3Q1K|C Chain C, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
 gi|317455529|pdb|3Q1K|D Chain D, The Crystal Structure Of The D-Alanyl-Alanine Synthetase A
           From Salmonella Enterica Typhimurium Complexed With Adp
          Length = 367

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 148/348 (42%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 9   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 68

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q  L +  +
Sbjct: 69  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGXLRVANL 128

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA   DK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 129 PFVGSDVLSSAACXDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 189 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 246

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G +R D 
Sbjct: 247 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGXARVDV 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S +P++   +G  + +L+  ++E A
Sbjct: 307 FLTA-DNEVVINEINTLPGFTNISXYPKLWQASGLGYTDLISRLIELA 353


>gi|330981592|gb|EGH79695.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata str.
           DSM 50252]
          Length = 345

 Score =  163 bits (411), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 161/344 (46%), Gaps = 53/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSVGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R       ++   +  P  IKP 
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRVLSRGESLSFTEAADQLGLPMFIKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+  + V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNVDVQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               R +   E+N  PG T +S++P++   +G S+ EL+  +++
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLID 345


>gi|266621471|ref|ZP_06114406.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288866846|gb|EFC99144.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 358

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 104/339 (30%), Positives = 157/339 (46%), Gaps = 50/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---DRSVGLV------------ 45
           + VL GG S EREVSLSSG   A+AL + G +V  +D     R    V            
Sbjct: 20  IIVLAGGYSPEREVSLSSGSLIANALMEQGHEVFFLDPWPGIREGEEVRYRTREEGYHFS 79

Query: 46  ---------LAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLE 76
                    L  L+                     D+ F  LHG  GEDG +QA+LE   
Sbjct: 80  SEIGMEAPDLEKLRAGHGMKKTLIGPGVLKACREADMVFIALHGGAGEDGQIQAVLEAYG 139

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IP+T S      L+MDK  SK  +   GV      L  +        +  P V+KPL  G
Sbjct: 140 IPHTGSSWKGCLLAMDKNISKIFMRMAGVATPDWYLAEKGKTSRPDFL--PCVVKPLDCG 197

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+ ++++++     L  +   +HG ++L+E+ + G E + GV+GD +L      +P+
Sbjct: 198 SSVGVTIVEREEEWSAALEAAF--SHGGRVLVEKKITGREFSVGVLGDRALPAI-EIIPE 254

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           S FY Y+ KY    +  + PA I      +++  A   H+ +     SR DF+ D     
Sbjct: 255 SGFYDYQNKYQPGMTREICPAWIDGMQEVKMKETALTVHRILELGYYSRVDFMMDE-DGA 313

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           ++ LE N  PGMTP+S+ P+ A  AG ++ EL   +V +
Sbjct: 314 IYCLEANTLPGMTPLSLLPQEAKAAGITYHELCEAIVNN 352


>gi|158312982|ref|YP_001505490.1| D-alanyl-alanine synthetase A [Frankia sp. EAN1pec]
 gi|158108387|gb|ABW10584.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 367

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 156/352 (44%), Gaps = 60/352 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E  +S  S      AL+ + + V  + +D                      
Sbjct: 11  VLLFGGRSTEHSISCVSAGGVLRALDRSRYDVIPVGIDTEGRWAVLPDDSPALAPVGTDL 70

Query: 46  ------------------------------LAHLKP-DLAFNVLHGNFGEDGLVQAILEL 74
                                         L  L P D+ F +LHG FGEDG +Q +LE+
Sbjct: 71  PIVDASAGLAVTLPPSPSAAPVVVHDPSAALRDLGPVDVVFPLLHGPFGEDGTIQGLLEM 130

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131
             +PY  SG+ ASA +MDK   K ++++ G+PV P  ++          +  +  P  +K
Sbjct: 131 AGLPYVGSGVFASAAAMDKQHMKSMLAAAGLPVGPYAVLRPGQALSEPDRERLGLPVFVK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +     +   L  +       + L+E  V G E+ CGV+        +
Sbjct: 191 PARGGSSIGISRVDAWADLDTALKTAR--ASDPKTLVEAAVVGREIECGVLDSLDGSGPQ 248

Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +VP          FY +E KY S  +   +PA++P ++ + V+  A  A +A+ C G++
Sbjct: 249 ASVPAEVTITSSAGFYDFEAKYLSDGAVFDVPARLPGELTERVRAAAVAAFEALDCAGLA 308

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R D    P S ++   E+N  PG TP+S++P M A +G  +  L+  +V+ A
Sbjct: 309 RVDMFVTP-SGEIVLNEVNTMPGFTPMSMYPRMWAASGIDYAALVDRLVQLA 359


>gi|308234070|ref|ZP_07664807.1| D-alanine--D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|328943467|ref|ZP_08240932.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
 gi|327491436|gb|EGF23210.1| D-alanine-D-alanine ligase [Atopobium vaginae DSM 15829]
          Length = 317

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 101/305 (33%), Positives = 147/305 (48%), Gaps = 10/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVDR-SVGLVLAHLKPDLAFNVL 58
           +AVL GG S E ++SL SG  C  AL+ AGF  V   DV   S    LA  + D+AF  +
Sbjct: 11  IAVLAGGWSDEAQISLQSGTECVKALKTAGFTTVEMFDVKDLSFIQRLAAHEFDIAFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           HG +GEDG +Q +LE+L IPYT SG+LASA+   K  +K    + G+P      +     
Sbjct: 71  HGRYGEDGCIQGLLEILHIPYTCSGVLASAMGTAKDIAKLAYENAGIPTPKDACLASDDE 130

Query: 118 ------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P  +KP   GSS G+  +++ + +   + +         +     
Sbjct: 131 IDKNVVQHIVDKLGLPLFVKPTDNGSSFGVFKVEEQKDLADAIKEEQKTGTHVLIEQAIV 190

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              I +                V  + FY  + K       HV+PA++  D+Y   Q LA
Sbjct: 191 GTEITVPVIGNHHPHALPIVEIVFNAPFYDIQAKAEPAPLHHVIPARLDKDVYAHAQELA 250

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH A+GCRG+SR+DF+ D  +   + LE N+ PGMT  S+ P+ AA+ G  F EL   
Sbjct: 251 EQAHVALGCRGVSRTDFIVDE-NGVPYALETNIIPGMTERSLIPDSAAHEGMGFPELCKR 309

Query: 292 MVEDA 296
           +VE A
Sbjct: 310 LVEYA 314


>gi|330950024|gb|EGH50284.1| D-alanyl-alanine synthetase A [Pseudomonas syringae Cit 7]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGHFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|74058496|gb|AAZ98839.1| VanD [Enterococcus gallinarum]
          Length = 343

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    L              
Sbjct: 6   VAVLFGGCSEEHTVSIKSAMELAANIDTEKYQPFYIGITKSGVWKLCEKPCLDWEQYAKY 65

Query: 50  ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPGRNTHGFLIQKEDRYEIQPVDVVFPIIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +   V + G+ V    ++           S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYTTVKNAGIEVPDFQIIQDGDSPKTECFSFPLFVKPARSGSSFGVNKVD 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           K + +   +  + +  +  ++LIEQ V G E+ C V+G  +  +       S  + +   
Sbjct: 186 KAEDLCAAI--NEARQYDRKVLIEQAVSGSEVGCAVLGTGTDLIVGEVDQISLKHGFFKI 243

Query: 206 YSSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +            T  +PA +P  + + +Q+ A   +Q +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENATIEVPADLPAKVRERIQKTAKKIYQVLGCRGLARIDLFLRE-DGHIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  EL+  ++E A
Sbjct: 303 LNEVNTMPGFTSYSRYPCMMTAAGFTLSELIDRLIELA 340


>gi|289550300|ref|YP_003471204.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315660240|ref|ZP_07913095.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
 gi|289179832|gb|ADC87077.1| D-alanine--D-alanine ligase [Staphylococcus lugdunensis HKU09-01]
 gi|315494667|gb|EFU83007.1| D-alanine-D-alanine ligase [Staphylococcus lugdunensis M23590]
          Length = 356

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S+E +VS  + +   +A++   + V  I +                      
Sbjct: 6   ICIIYGGKSAEHDVSKLTAQNVLNAIDKEKYLVDIIYITNDGLWKKKGNITATIESPEEL 65

Query: 46  -LAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            L  ++P                D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  TLTDVEPEDITLLLKQSSAGEAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +          +  +  P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYQGNIIKLVKDKLEYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +Q +   + ++       +L+IEQ ++  E+   V+G+   + T     V   
Sbjct: 186 GISKCNDEQELKAGIAEAF--QFDRKLVIEQGINAREVEVAVLGNDYPETTWPGEVVKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKIRLQIPAELDQEVQLTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIELA 341


>gi|302537152|ref|ZP_07289494.1| D-alanylalanine synthetase [Streptomyces sp. C]
 gi|302446047|gb|EFL17863.1| D-alanylalanine synthetase [Streptomyces sp. C]
          Length = 385

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 88/362 (24%), Positives = 145/362 (40%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   +++ + ++V  I +       L    P         
Sbjct: 19  VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADAPERMAIADRQ 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  LPSVEALAESPDGTVVLPVDPASREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  IPY   G+L+SA+  DK   K+V +S G+ V P + +                 
Sbjct: 139 LLELSGIPYVGCGVLSSAVGQDKDYMKRVFASYGLNVGPYVTIRPREWEADQAAATAKVL 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP + GSS+GI  +     +   + ++    H  ++++E  + G E+ 
Sbjct: 199 DFAGEHGWPLFVKPARAGSSIGITKVDDASGLDAAIREAR--RHDPKVIVEALLRGREIE 256

Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C                  P S    Y        ++T ++PA +  +   EVQ+LA  A
Sbjct: 257 CGVLEFEDGPRASAPAEIPPVSSHDFYDFEAKYIDSATGLVPAPLTPEQTAEVQKLAIDA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P M   +G  + EL+  +++
Sbjct: 317 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGIEYPELVDRLIQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|167551817|ref|ZP_02345570.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
 gi|205323388|gb|EDZ11227.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Saintpaul str. SARA29]
          Length = 364

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 151/348 (43%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  +  +      +  +       ++++EQ + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAVALAF--EFDHKVVVEQGIKGREIECAVLGNDNPQAST 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++        PA+IP ++  +++ +A  A+Q +GC G++R D 
Sbjct: 244 CGEIVLNSEFYAYDTKYIDDNGAQVVVPAQIPSEVNDKIRAIAIQAYQTLGCAGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++   +   + +L+  ++E A
Sbjct: 304 FLTA-DNEVVINEINTLPGFTNISMYPKLWQASRLGYTDLISRLIELA 350


>gi|66047146|ref|YP_236987.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257853|gb|AAY38949.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. syringae
           B728a]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLSV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|330973066|gb|EGH73132.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aceris str.
           M302273PT]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVDVESGQPLAVIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA  MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAACMDKDVTKRLLRDAGIAVAPFRVLSRGESLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|271969210|ref|YP_003343406.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270512385|gb|ACZ90663.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 369

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 61/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG +SE  VS+    +   A++ + ++V  I + +    VLA             
Sbjct: 11  VAIVFGGRNSEHAVSILGAGSVLGAIDRSKYEVIPIGIAQDGRWVLASGDQRYAIEGDEL 70

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F V+HG F EDG +Q +LE+  +
Sbjct: 71  PSVDVQGTGLALPSGGGSLVAYDAGSIPVELGQVDVVFPVMHGPFAEDGTIQGLLEMAGV 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYV 129
            Y  SG+LASA+ MDK   K V+++ G+PV P +++      +           +  P  
Sbjct: 131 RYVGSGVLASAVGMDKAYMKMVLAASGLPVGPYVVIRDRDWRTDRDRVLKEVQELGWPVF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS GI      + +   +  +    H  ++L+E  + G E+ C V+     + 
Sbjct: 191 VKPARAGSSQGISKAHDLEELEAAVGFAR--EHDPKVLVEAAIAGREIECAVLESLGDEA 248

Query: 190 TEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +VP         +F+ +E KY   + +  +PA IP D+ + ++ +A  A +A+GC G
Sbjct: 249 ARASVPGEVLVRGDHEFFDFEAKYIGDDMSLSVPADIPADVAENLRAMAVRAFEALGCEG 308

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +SR DF +     ++   EIN  PG T +S+ P++ A  G S+ EL+  +++ A
Sbjct: 309 LSRVDFFYTA-DGRLILNEINTMPGFTAMSVAPQLWAATGLSYAELVERLIQLA 361


>gi|238063267|ref|ZP_04607976.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
 gi|237885078|gb|EEP73906.1| D-alanine-D-alanine ligase [Micromonospora sp. ATCC 39149]
          Length = 365

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 147/352 (41%), Gaps = 59/352 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +   AL+   F+V  + + R+   VL    P         
Sbjct: 9   VALVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGKWVLTSADPAQLAISARR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITADAGADLVLRADPTGSGLMVLDPAEGPRAIADVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ +  G+PV P          + + +  +  P  +
Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAVEGIPVGPYAVLRNGVTLSEEDKRRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV- 189
           KP + GSS GI  +     +   +  +       ++L+E  + G E+ CGV+   +    
Sbjct: 189 KPSRAGSSFGITKVDDWVDLEAAVAAAREI--DPKVLVEAAIVGREIECGVLEGEAGGGA 246

Query: 190 -----TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                 E+       +            + LPA +P  + ++VQ  A  A  A+ C G++
Sbjct: 247 EASVLVEVRAGGDHDWYDFEAKYLSEPEYDLPATLPEHVTRQVQEYAVRAFAALDCAGLA 306

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R DF   P    V+  EIN  PG TP S+FP M A +G  + +L+  ++  A
Sbjct: 307 RVDFFVTP-DLDVYLNEINTMPGFTPTSMFPLMWAASGLEYPKLVNRLIRTA 357


>gi|168488615|ref|ZP_02712814.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|221232408|ref|YP_002511561.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225855101|ref|YP_002736613.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae JJA]
 gi|298230136|ref|ZP_06963817.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19F]
 gi|298254425|ref|ZP_06978011.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae str. Canada
           MDR_19A]
 gi|298503415|ref|YP_003725355.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|254767740|sp|B8ZM66|DDL_STRPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767742|sp|C1CFP2|DDL_STRZJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|6634564|emb|CAB64463.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634569|emb|CAB64467.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|183572621|gb|EDT93149.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae SP195]
 gi|220674869|emb|CAR69444.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae ATCC 700669]
 gi|225724220|gb|ACO20073.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae JJA]
 gi|298239010|gb|ADI70141.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TCH8431/19A]
 gi|332072500|gb|EGI82983.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17570]
          Length = 347

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|7110137|gb|AAF36803.1|AF155139_2 putative D-alanyl-D-alanine ligase VanE [Paenibacillus popilliae]
          Length = 343

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/338 (23%), Positives = 144/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG S E +VS+ S K  A+ ++   ++   I + RS    +              
Sbjct: 6   IAILFGGCSEEHDVSVKSAKEIANNIDTEKYEPIYIGITRSGVWKMCEKPCMDWDNENCR 65

Query: 50  ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D  F+VLHG  GEDG +Q + EL  IPY    + 
Sbjct: 66  SAVLSPDKKMHGLLVMRNKGYQIQRIDAVFSVLHGKSGEDGAIQGLFELSSIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  V  + G      +++N   +   + ++ P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLTYIVAQNAGFGTPEFLILNHGDIPDSNTLTYPVFVKPARSGSSFGVNKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            +  +   +  +    +  ++LIEQ V G+E+ C V+G+ +  +       S  +     
Sbjct: 186 NEDELDAAIETAR--QYDSKVLIEQAVPGLEVGCAVLGNGTDLIVGEVDQISLSHGIFRI 243

Query: 206 YSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +  +   ++Q  A   ++A+GC+G+SR D      + ++ 
Sbjct: 244 HQEDQPEKGSENAVVLVPANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFL-QENGRII 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M A AG +   L+   +  A
Sbjct: 303 LNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCITLA 340


>gi|330964488|gb|EGH64748.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 161/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVETGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEADFAAALALGF--EFDHKLLIEQGIVGREVECAVLGNDEPQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|330889540|gb|EGH22201.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. mori str.
           301020]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|298488709|ref|ZP_07006738.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
 gi|298156782|gb|EFH97873.1| D-alanine--D-alanine ligase [Pseudomonas savastanoi pv. savastanoi
           NCPPB 3335]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEGDYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|289624931|ref|ZP_06457885.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289650492|ref|ZP_06481835.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330867221|gb|EGH01930.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aesculi
           str. 0893_23]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRAETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|71733971|ref|YP_276049.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71554524|gb|AAZ33735.1| D-alanine--D-alanine ligase A [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320325604|gb|EFW81666.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320327112|gb|EFW83126.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330879137|gb|EGH13286.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330989504|gb|EGH87607.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 363

 Score =  163 bits (411), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 160/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P ++++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|302385662|ref|YP_003821484.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302196290|gb|ADL03861.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 351

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 99/336 (29%), Positives = 154/336 (45%), Gaps = 49/336 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG S EREVSLSSG    +AL   G +V  +D                       
Sbjct: 3   IVVLAGGFSPEREVSLSSGAMITNALIRTGHEVYLLDSYLGAADGEEVRFKSLHDGTGFF 62

Query: 38  --VDRSV--GLVLAHLKP----------------DLAFNVLHGNFGEDGLVQAILELLEI 77
             + R V     L+  +                 D+ F  LHG  GE+G +QA+L+   I
Sbjct: 63  WEIGREVPELDRLSKERNGKGYIGNRVIEICGLADIVFVALHGGAGENGQIQAVLDAYGI 122

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
            YT +G      +MDK  +K ++ + G+P     L      +S      P V+KP   GS
Sbjct: 123 SYTGTGYEGCLKAMDKPMAKLLMRNSGIPTPDWRLY--SRGESLEPFPYPCVVKPCGCGS 180

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI +++ +    + L  +   ++ D++L E  + G E + G++G+ +L      +PK 
Sbjct: 181 SVGITMVEGEDQWEMALDSAF--SYEDRVLAEVKITGREFSVGILGERALPAI-EIIPKK 237

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY YE KY +  +  + PA +  +  + +  +A   H+ +G    SR DFL       +
Sbjct: 238 GFYDYENKYQAGLTEEICPASLTEEQEEFMGCMALKVHRVLGLGYYSRVDFLM-EEDGSL 296

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F LE N  PGMTP S+ P+ A  AG S++EL   +V
Sbjct: 297 FCLEANTLPGMTPFSLLPQKAQAAGISYQELCEEIV 332


>gi|330898548|gb|EGH29967.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 363

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 161/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLHFDEADYLLNATDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKPLSLLPGSIGGQFVEVESGQPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +L+SA+ MDK  +K+++   G+ V P  +++R       ++   +  P  +KP 
Sbjct: 125 PFVGADVLSSAVCMDKDVTKRLLRDAGIAVAPFRVLSRGDSLSFTEAADQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+  + V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNVDVQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R +   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|218781084|ref|YP_002432402.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
 gi|218762468|gb|ACL04934.1| D-alanine/D-alanine ligase [Desulfatibacillum alkenivorans AK-01]
          Length = 320

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 94/302 (31%), Positives = 148/302 (49%), Gaps = 8/302 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG 60
           A+L GG S+EREVS+ SG    +AL+   F V   D    +  ++      D+A  +LHG
Sbjct: 7   ALLFGGASAEREVSILSGTQVLNALDKDRFIVRCYDPKIDIPRLVHDAPNIDVAVVMLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +Q +L++L+IPY  SG+L SA+SM K+ SKQ+    G+   P  +V+      
Sbjct: 67  EYGEDGRIQGLLDMLDIPYQGSGVLGSAVSMSKLASKQLYEQAGIKTPPYRVVSPDNRHE 126

Query: 121 QHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              ++     P  +KP  GGSS+G+ ++K    +   L    + +    L        I 
Sbjct: 127 AANLADQVGYPLFVKPCMGGSSIGMSLVKGPADLDKALDAGFAEDPVLLLEACVTGVEIT 186

Query: 177 LTCGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +         VP  +  F+ Y  KY +  S  + PA+I  +  ++   L+  A
Sbjct: 187 GAVLGNDELEALPLIEIVPGEEFAFFEYGAKYEAGKSEEICPARISEEGAQKAMDLSKQA 246

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           H+A+ C+G SR+D + D     +  LE N  PGMT  S+ P+ A  AG  F  L+  +V+
Sbjct: 247 HKALFCKGYSRTDMILD-KDGALHVLETNTIPGMTANSLLPKAAKVAGMDFTALMSRLVD 305

Query: 295 DA 296
            A
Sbjct: 306 LA 307


>gi|73662109|ref|YP_300890.1| D-alanyl-alanine synthetase A [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|123643053|sp|Q49Z31|DDL_STAS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|72494624|dbj|BAE17945.1| D-alanine-D-alanine ligase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 356

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + ++ GG S+E +VS+ + +   +A++   +++  I +             D        
Sbjct: 6   VCIVYGGKSAEHDVSILTAQNVLNAIDKEQYQIDIIYITNDGAWKKKENIVDTINDIDSL 65

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                     F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RLIDVEAGEISKLLSQGSTGNAYSAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+ +  G+P  P +   R                 +  P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFAHRGLPQLPYVSFLRSEYHKYEGNILKLVHDKLEYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     ++ +   + ++       +L+IEQ ++  E+   V+G+   + T     + + 
Sbjct: 186 GISKCNNEEELKNGIEEAF--QFDRKLVIEQGIEAREIEVAVLGNDYPETTWPGEVIKEV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY        +PA +  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKAKYKDGKIKLDIPADLDEEVQMTLRNMAVEAFKATDCAGLLRADFFVT-DDNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGVSYSDLIKKLIELA 341


>gi|330995871|ref|ZP_08319767.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
 gi|329574402|gb|EGG55973.1| D-ala D-ala ligase protein [Paraprevotella xylaniphila YIT 11841]
          Length = 335

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/330 (23%), Positives = 148/330 (44%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S L+   ++V  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIYSFLDKERYEVYIIEIKGMAWEAHLKDGSRSNVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V  S++V +              I  P  +KP  GGSS G+  +K    I   +
Sbjct: 125 KGFGVSVSESLIVRKGFEHLVTDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212
           L++      D++++E +++G E++ G       +V   A        +       +    
Sbjct: 185 LKAMH--ESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEVVSDNEFFDYNAKYNGQVR 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEINVQ 265
            + PA++  +  + V  +  + +  +GC GI R D++    + +       +  LE+N  
Sbjct: 243 EITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKEKERINMLEVNTT 302

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG   +++L  ++E+
Sbjct: 303 PGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|148993757|ref|ZP_01823184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|6634579|emb|CAB64475.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634584|emb|CAB64479.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|147927713|gb|EDK78737.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP9-BS68]
 gi|332200230|gb|EGJ14303.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47368]
          Length = 347

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|257466679|ref|ZP_05630990.1| D-alanine--D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917832|ref|ZP_07914072.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
 gi|313691707|gb|EFS28542.1| D-alanine-D-alanine ligase [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 288

 Score =  162 bits (410), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 106/297 (35%), Positives = 166/297 (55%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + + +   +        DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTKENMISAFQDENYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK      + +  +     + + +   +
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDK------LLTKKIASLEGVRMAKTYSN 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              + S P ++KP K GSS+GI V    + +   L +          +IE+Y+ G ELT 
Sbjct: 117 VAEISSYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEI-----SGYAMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRMLVEDA 286


>gi|297156912|gb|ADI06624.1| D-alanyl-alanine synthetase A [Streptomyces bingchenggensis BCW-1]
          Length = 390

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +PD        
Sbjct: 24  VAVVFGGRSSEHTISVVTAGAVLRAIDREKYDVLPIGITGDGRWALTADEPDRMAIAGRV 83

Query: 53  ------------------------------------------LAFNVLHGNFGEDGLVQA 70
                                                     + F +LHG +GEDG +Q 
Sbjct: 84  LPSVEGLAESEDGSVLLPVEQGNREVVYAEPGAVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  +G+LASA+ MDK   K+V  S G+PV P  ++     +           
Sbjct: 144 LLELSGVPYVGAGVLASAVGMDKEYMKRVFVSFGLPVGPYEVIRPREWEKDPAAARKKIV 203

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++++E  + G E+ 
Sbjct: 204 EFAGEHGWPVFVKPARAGSSIGISKVDDISGLEEAIEEAR--RHDPKIVVEALLRGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  V+PA +  +  + V+ LA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVSTHDFYDFEAKYIDSADGVVPAPLTEEQTERVRELAVRA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF     S +    EIN  PG TP+S++P M   +G S+ EL+  +++
Sbjct: 322 FEAASCEGLVRADFFLL-DSGEFVINEINTMPGFTPISMYPRMWQESGVSYPELVDRLIQ 380

Query: 295 DA 296
            A
Sbjct: 381 AA 382


>gi|257486598|ref|ZP_05640639.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
 gi|331010080|gb|EGH90136.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 363

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/346 (25%), Positives = 159/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +        L    P 
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYTLTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSASGKQLSLLPGSTGGQFVEVETGKPLAAIDVVFPLIHGAFGEDGALQGVLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P + ++R       D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMGLSRGETLSFADAATQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+  +  +      L          +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVGVSKVSDEAGFVAALALGF--EFDHKLLIEQGIVGREVECAVLGNFDAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA+ P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEFPADLSDQVREVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +R +   E+N  PG T +S++P++   +G ++ EL+  ++  A
Sbjct: 303 T-DTRDIIINEVNTLPGFTSISMYPKLWQASGLTYAELIHRLIVLA 347


>gi|149011467|ref|ZP_01832714.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182684613|ref|YP_001836360.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|303258600|ref|ZP_07344580.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|303262687|ref|ZP_07348627.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|303263627|ref|ZP_07349549.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|303266388|ref|ZP_07352277.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|303268261|ref|ZP_07354059.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|229486022|sp|B2IRS6|DDL_STRPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147764457|gb|EDK71388.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae SP19-BS75]
 gi|182629947|gb|ACB90895.1| D-alanylalanine synthetase [Streptococcus pneumoniae CGSP14]
 gi|301802373|emb|CBW35127.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV200]
 gi|302636243|gb|EFL66738.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP14-BS292]
 gi|302640101|gb|EFL70556.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae SP-BS293]
 gi|302642212|gb|EFL72561.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS458]
 gi|302644088|gb|EFL74346.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS457]
 gi|302646665|gb|EFL76890.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS397]
 gi|332201096|gb|EGJ15167.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA47901]
          Length = 347

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHDPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|197285102|ref|YP_002150974.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227355529|ref|ZP_03839924.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
 gi|229485975|sp|B4ETX3|DDL_PROMH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|194682589|emb|CAR42650.1| D-alanine:D-alanine ligase A [Proteus mirabilis HI4320]
 gi|227164325|gb|EEI49214.1| D-alanine:D-alanine ligase A [Proteus mirabilis ATCC 29906]
          Length = 366

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/348 (22%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S+E +VSL S K   + L+   F +  I ++                     
Sbjct: 6   VAIIFGGKSTEHQVSLQSAKNIINELDRTKFDLCLIGINEQGQWHEYAEDNYLINSDNPS 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + D+ F ++HG +GEDG +Q +L ++++
Sbjct: 66  TISLSQPLRPVAIIPGSTRQQFISLTDGQPLAQIDVVFPIVHGAYGEDGTLQGLLHMIDM 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           PY    I++SA  MDK  +K+++          + +    L +    +    +  P  IK
Sbjct: 126 PYVGPNIMSSAACMDKDITKRLLDDAGLAVAPFITLMAHQLNDISYNEVVEQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  +    +  +++IE  + G E+ C V+G+   +V+ 
Sbjct: 186 PANLGSSVGISKVNNEAEFNAALSMAF--EYDLKVIIESAIVGREIECAVLGNEEPEVSP 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                 +   Y      ++      V+PA +   I   +++ A  A+Q + C G+SR D 
Sbjct: 244 CGEIVLNDAFYAYNTKYIDDDGAKVVVPADLDNAISLHIRQTALKAYQVLNCLGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                  +V   EIN  PG T +S++P++    G  ++ L+  ++E A
Sbjct: 304 FLTE-DNQVIINEINTLPGFTNISMYPKLWQSTGLDYQSLITKLIELA 350


>gi|307127881|ref|YP_003879912.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
 gi|6634574|emb|CAB64471.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|306484943|gb|ADM91812.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae 670-6B]
          Length = 347

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVAPSAIYEEEAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESTGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|40021675|gb|AAR37060.1| VanD5 [Enterococcus faecium]
          Length = 343

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 144/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRTHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKSLAYMVVKNAGIEVPGFRVLQKGDSLKAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   + ++    +  ++L+E+ V G E+ C ++G+ +  +          + +   
Sbjct: 186 RAEELQAAVTEAG--KYDCKILVEEAVSGSEVGCAILGNENALMAGEVDQIELRHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAVLPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  E+L  ++E +
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340


>gi|331265947|ref|YP_004325577.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
 gi|326682619|emb|CBZ00236.1| D-ala,D-ala ligase [Streptococcus oralis Uo5]
          Length = 347

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWNKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENHEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|227495857|ref|ZP_03926168.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
 gi|226834614|gb|EEH66997.1| D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM 15434]
          Length = 404

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 86/362 (23%), Positives = 149/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   F V  + +      +L    P         
Sbjct: 37  VAVVFGGRSGEHTISCATAAGVLSAIDRDRFDVLPVGITLDGQWLLVDDDPAALALDESR 96

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 97  PPVEITAEGLGRGELAMRLGGGAFTAVTPTGPKVLGEVDVVLPLLHGPYGEDGTIQGMLE 156

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125
           +L+IPY   G+LASA  MDK  +K ++++ G+P    ++V+    DS+  +         
Sbjct: 157 MLDIPYVGCGVLASAAGMDKQVTKVLLNAAGIPTAQHVVVHPHRWDSERELILDACEALT 216

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +++ + +P  +  +       ++L+E  V+G E+   V+   
Sbjct: 217 YPLFVKPARAGSSLGITKVERREDLPAAIEAAREV--DPKVLVESGVEGREVEVAVLDGH 274

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234
                 +A P                             V PA++     + ++  A  A
Sbjct: 275 HGAAPRVAEPGEIVMDASHGAGEFYDYETKYLAHDAVQMVCPARVSHQESELLKETAARA 334

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G  G+ R DF   P   +    E+N  PG TP S++P M   +G S+ +L+  ++E
Sbjct: 335 FEALGGEGLMRVDFFLTPR-GEAVVNEVNTMPGFTPFSMYPYMWQVSGLSYTDLVSELIE 393

Query: 295 DA 296
            A
Sbjct: 394 LA 395


>gi|25027987|ref|NP_738041.1| D-alanyl-alanine synthetase A [Corynebacterium efficiens YS-314]
 gi|39930900|sp|Q8FPQ9|DDL_COREF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23493270|dbj|BAC18241.1| putative D-alanine--D-alanine ligase [Corynebacterium efficiens
           YS-314]
          Length = 361

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 95/349 (27%), Positives = 158/349 (45%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG S+E  VS  S  A  + L+   ++V  + +      V+    P         
Sbjct: 11  VAVLYGGRSAEHSVSCVSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q +  L +IP
Sbjct: 71  MPEVQRREEIRPSLDPAHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135
               G+L+SA  MDK  +K+++++ G+P+   +++      T   + L+  P  +KP +G
Sbjct: 131 VVGPGVLSSAAGMDKEFTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  + + + +P  +  +    H +++++E  + G E+ CGV+      +      
Sbjct: 191 GSSIGISKVSRWEDLPAAVDLAR--QHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPA 248

Query: 196 KSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA +  +I + VQ LA    QA+ C G++R D
Sbjct: 249 MLRGTEDGEGGFYDFDTKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M A +G  + ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 355


>gi|169829744|ref|YP_001699902.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
 gi|168994232|gb|ACA41772.1| D-alanine--D-alanine ligase B [Lysinibacillus sphaericus C3-41]
          Length = 364

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 147/341 (43%), Gaps = 46/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                  +  L
Sbjct: 10  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGNRLEKPVSTIEEL 69

Query: 50  KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           +                          D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 70  QFGDNTTILENNITDFLIDEHGNAVQFDVVFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 129

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R              +  ++ P  +KP   
Sbjct: 130 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQTIIERCEKRLTWPMFVKPANL 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI        +   +  +  ++    +        IEL         + V     P
Sbjct: 190 GSSVGISRATNRDELIKAIEVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEIKP 249

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            ++FY Y+ KY   ++  ++PA++P +    ++ LA  A +AI   G+ R+DF       
Sbjct: 250 VTEFYDYDSKYKDGSTALIIPAELPEETESSLKELAKRAFKAIDGSGLVRADFFVTA-DN 308

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 309 SVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 349


>gi|295108990|emb|CBL22943.1| D-alanine--D-alanine ligase [Ruminococcus obeum A2-162]
          Length = 344

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 87/339 (25%), Positives = 135/339 (39%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER+VS+ SG    SAL     +   +DV                      
Sbjct: 3   IVVLAGGTSTERDVSIVSGTGICSALRQKNHQAILVDVFCGLENVDWADPFPESYDVEQA 62

Query: 39  ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
               +S    +  LK                  D  F  LHG+ GEDG +QA+ +L+ I 
Sbjct: 63  VSYIKSFNPHIEELKKSRKEFFGPNVLELCKKADFVFLGLHGSNGEDGRLQAVFDLMGIL 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKG 135
           YT +G L+SA++MDK  +K +    GVP      + +        +  +  P V+K   G
Sbjct: 123 YTGTGYLSSAMAMDKGVTKAMFQMRGVPTPGGKAMKKKDRVETLQELGMDFPVVVKTCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ ++         L  + ++ +   +          +      D         VP
Sbjct: 183 GSSIGVYIVDNQADYTKALDGAFTYENEVVVEEFVEGTEYTVAVV---DGKAYPVVQIVP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY YE KY         PA I  ++ + +Q  A   + A+      R DF+      
Sbjct: 240 VQGFYDYENKYKPGAVKETCPAPISEELTRRLQEYAVEGYHALEMESYGRLDFIVT-KDE 298

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           K++ LE N  PGMTP S+ P+ AA  G  +  L   ++ 
Sbjct: 299 KIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIR 337


>gi|254495422|ref|ZP_05108346.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
 gi|85819777|gb|EAQ40934.1| D-alanine-D-alanine ligase [Polaribacter sp. MED152]
          Length = 324

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 158/323 (48%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG SSE ++S+ SG      L+   + V ++ + +   +VL              
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVFQNLDTNKYNVFRVHILKDKWVVLDESNAEYQINKDDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  H+K D  FN +HGN GE+G++ + LELL IP+T +     AL+ +K  +  VV
Sbjct: 65  SCVINQNHIKFDCVFNAIHGNPGENGMILSYLELLNIPHTSAPFYQMALTFNKRDTLSVV 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+  + +   I      P  IKP   GSS GI     ++ I   +L+
Sbjct: 125 KEYGIKTAKSIYLNKGDVINTKEIKEKVGLPCFIKPNNAGSSYGISKAYSEEEIFHGILK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +   N    +LIE +++G E++        +  +      V ++DF+ YE K     S  
Sbjct: 185 AY--NEDSAILIESFLEGTEVSVGVIEYENEIKVLPITEIVSENDFFDYEAK-YEGKSQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I     K V+ +A   ++ +   G SR++++F  ++ + ++LEIN  PG+T  SI
Sbjct: 242 ITPARITEQQQKRVEEVAQNVYKCLNMSGFSRAEYIF--VNNEPYFLEINTVPGLTEESI 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S  +L    ++ A
Sbjct: 300 LPQQAKEAGISLAQLFDNAIQMA 322


>gi|227501785|ref|ZP_03931834.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
 gi|227077810|gb|EEI15773.1| D-alanyl-alanine synthetase A [Corynebacterium accolens ATCC 49725]
          Length = 355

 Score =  162 bits (410), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 93/348 (26%), Positives = 157/348 (45%), Gaps = 56/348 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S+E  VS  S  A    L+   F+V  I + R                    
Sbjct: 7   VAVLYGGRSTEHSVSCVSAGAIMKHLDPEKFQVVPIGITREGTWTPGDTEGLEIVDGVMP 66

Query: 49  -----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F +LHG +GEDG +Q + EL  IPY
Sbjct: 67  EVKRGTELALSADPTRKGEIRAISDGSLYAQVDVIFPILHGPYGEDGTMQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+++S+ G+PV P ++V      T++ +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKILSAAGLPVAPEVIVQGRTELTVEEKERLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +      P  +  +      D++L+E  + G E+  GV+     ++       
Sbjct: 187 SSIGVSKVSDWADFPEAVRIALED--DDKILVEPEIVGREVEVGVLQYPDGELIASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY +E KY     T  +PA  P ++  +++ +A  A +A+ C G+SR DF
Sbjct: 245 LKGIDDSDEGFYGFETKYLDNVVTAQIPAPFPEELTAQLRDMAIRAFKALNCTGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   ++  E+N  PG TP+S++P++ A +G  +  LL  ++  A
Sbjct: 305 FVTEEG--LYINEVNTLPGFTPISMYPQVLAASGVDYPSLLEVLIASA 350


>gi|283457865|ref|YP_003362465.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
 gi|254967094|gb|ACT97589.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967098|gb|ACT97591.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967102|gb|ACT97593.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|283133880|dbj|BAI64645.1| D-alanine-D-alanine ligase [Rothia mucilaginosa DY-18]
          Length = 372

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 142/361 (39%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   + V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   + ++    H  +++IE  + G E+ C V+  
Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235
              ++   + P       +                     PA +P D+   ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQDRLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|162448834|ref|YP_001611201.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
 gi|161159416|emb|CAN90721.1| D-alanine-D-alanine ligase [Sorangium cellulosum 'So ce 56']
          Length = 380

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 151/361 (41%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E E+SL S +    AL+   F+   I +D+S   +L              
Sbjct: 9   VAVLFGGRSAEHEISLLSARFVVEALDRDRFEPVLIGIDKSGRWLLQEEALLLGAARDPR 68

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+ F VLHG  GEDG VQ +LEL  
Sbjct: 69  LARLNEAMPEIALDAHPGPAGEATLTVPGGARAPIDVVFPVLHGPTGEDGCVQGLLELAG 128

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----------- 125
           +PY  SG+L SA+ MDK   K+++    +P+ P + + R   D                 
Sbjct: 129 VPYVGSGVLGSAVGMDKDVMKRLLREAEIPIVPHVTLRRAAWDRDRGACIDQIAALSAPG 188

Query: 126 ----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
                P  +KP   GSS+G+  +K    I   +  +       +++ EQ ++G  E+ C 
Sbjct: 189 SAGFGPIFVKPANLGSSVGVRRVKARSEIEAAVEHAF--EFDLKIVCEQGIEGVREIECS 246

Query: 181 VMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAH 235
           V+GD     +            FYSY  KY   +  T  +PA +       VQ +A  A 
Sbjct: 247 VLGDDDPIASVPGEIVVGHADGFYSYAAKYIDADGATIRIPADLSPAEANAVQLVALRAF 306

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A+   G++R D    P  R ++  EIN  PG T +S++P++   +G   REL+  ++  
Sbjct: 307 RALEASGMARVDLFLSP-DRALYVNEINTIPGFTAISMYPKLWEASGIPARELIERLIAL 365

Query: 296 A 296
           A
Sbjct: 366 A 366


>gi|315506958|ref|YP_004085845.1| d-alanine/d-alanine ligase [Micromonospora sp. L5]
 gi|315413577|gb|ADU11694.1| D-alanine/D-alanine ligase [Micromonospora sp. L5]
          Length = 331

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 16/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V+++  S+P  +     + +    L+E+YV
Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAM--VGCFAYDQTALVERYV 200

Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+++   V               VP++  Y Y  +Y++  +T   PA++       V  
Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEIVPRNGVYDYAARYTAGRTTWHAPARLDAATTARVTE 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F  +L
Sbjct: 261 VALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRVL 319

Query: 290 LWMVEDASCLR 300
             +V  A+  R
Sbjct: 320 GTLVTRAAARR 330


>gi|302870721|ref|YP_003839358.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
 gi|302573580|gb|ADL49782.1| D-alanine/D-alanine ligase [Micromonospora aurantiaca ATCC 27029]
          Length = 331

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 143/311 (45%), Gaps = 16/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G      D D ++   L    PD     LHG  
Sbjct: 23  VLAGGLSYERDVSLRSGRRVLDALRAVGVDAELRDADVALLPALTADPPDAVVIALHGAT 82

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L ++PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 83  GEDGSLRGVLDLWDVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 142

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V+++  S+P  +     + +    L+E+YV
Sbjct: 143 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVREAASLPAAM--VGCFAYDQTALVERYV 200

Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+++   V               VP++  Y Y  +Y++  +T   PA++       V  
Sbjct: 201 PGMDVAVSVLDLGKGPQALPPVEIVPRNGVYDYAARYTAGRTTWHAPARLDAATTARVTE 260

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R +SR D + D        LE+NV PGMT  S+ P     AG  F  +L
Sbjct: 261 VALAAHTALGLRDVSRVDLIVDA-GGDPHVLEVNVSPGMTETSLLPLAIQAAGLDFGRVL 319

Query: 290 LWMVEDASCLR 300
             +V  A+  R
Sbjct: 320 GTLVTRAAARR 330


>gi|254967090|gb|ACT97587.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967092|gb|ACT97588.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 372

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 144/361 (39%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   ++V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYEVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGTGDSRLTLVDAEGIVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLHYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNREWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   + ++    H  +++IE  + G E+ C V+  
Sbjct: 187 GFPLFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235
              ++   + P       +                     PA +P D+ + ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|329298784|ref|ZP_08256120.1| D-alanine/D-alanine ligase [Plautia stali symbiont]
          Length = 364

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 80/348 (22%), Positives = 146/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ G  S+E EVSL S K    A++   + V  + +D+     L              
Sbjct: 6   VGIVFGDKSAEHEVSLQSAKNILEAIDKNKYDVVLLGIDKQGEWHLNDASGFLLNADNPA 65

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+   ++HG  GEDG +Q +L +  +
Sbjct: 66  LIAPNRSGENVALVPGSRGEQLITRQQAQPLSPLDVIIPIVHGTLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+  S +L SA+SMDK  +K+++   G+ V P + V +                 P  IK
Sbjct: 126 PFVRSDVLGSAVSMDKDFTKRLLRDAGLKVAPWLSVTQAQRAALDVQAVIARFGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  + +       L  +       ++LIEQ + G E+ C V+G+ + + + 
Sbjct: 186 PANQGSSVGVSKVTQPDEFDAALGLAF--RFDRKVLIEQGISGREIECAVLGNEAPEASP 243

Query: 192 IAVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++   +  V+PA I  +  + ++ +A  A QA+ C G++R D 
Sbjct: 244 CGEIVVHDAFYSYDTKYISESGTQVVVPADISTEASEAIRAVAITAFQALECFGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +  +   E+N  PG T +S++P++   AG S+ +L+  ++E A
Sbjct: 304 FLTE-TGDIIVNEVNTLPGFTNISMYPKLWLAAGLSYSDLITRLIELA 350


>gi|325109113|ref|YP_004270181.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324969381|gb|ADY60159.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 312

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 90/303 (29%), Positives = 138/303 (45%), Gaps = 10/303 (3%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +LMGG S+ERE+SL SGKA  +AL + G  V+  D   +        + D+ F  LHG  
Sbjct: 5   LLMGGASAEREISLLSGKAVQAALLNLGHHVTVHDPIDAPPAADVLQRHDVVFLALHGTG 64

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----T 117
           GEDG +Q++LE   +P+T S   AS ++  K  SK      G+    +            
Sbjct: 65  GEDGQIQSLLEQANVPFTGSNADASRIAFHKGLSKIRFQQAGLATPDAEPFRIDEAIEKI 124

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    +  P+ +KP   GSSLG+  I   + +P  +            LIE+ + G E 
Sbjct: 125 QNRAARLVSPWFVKPDAQGSSLGVSKIDSPEDLPSAVDSVRKL--DKAGLIEEAISGTEW 182

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G+    +           +F +Y  KY    + H +      +  K++  +A  A+QA
Sbjct: 183 TVGLFDSVTFPPV-AIQAHREFNTYAAKYEQAAAKHTINRGAATEAEKQLMAVAREAYQA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +G  G++R D + D      + LE+N  PGMT  S  P+ AA  G+S  EL   M   A+
Sbjct: 242 VGATGLARVDLICDVQGN-PWILEVNTIPGMTETSTVPKAAAAFGWSLGELCERMC-AAA 299

Query: 298 CLR 300
             R
Sbjct: 300 IER 302


>gi|303255992|ref|ZP_07342020.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
 gi|302597051|gb|EFL64169.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae BS455]
          Length = 347

 Score =  162 bits (409), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|254526519|ref|ZP_05138571.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
 gi|221537943|gb|EEE40396.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9202]
          Length = 355

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 142/343 (41%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E EVS+SS K    A    +    FKV    +D+    +           
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKAFYIDKYGDWLDNDLSEKILND 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  EIKSQNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTKKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +                  +    ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLNDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++   +    +     V  IE       +       
Sbjct: 189 PSNSGSSLGISKVINESEILHSLEKAQKIDSRILVEEGLEVREIECGIIGNSELLTSEIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +SD+Y Y+ K    N+  ++PA+I   I KE++++A  + +A+   G +R DF  +
Sbjct: 249 EVKYESDWYDYDSK-YYSNNKIIIPAEIDSKITKEIKKIAIQSCKALNIFGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 308 KYSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|50082937|gb|AAT70090.1| D-alanyl-D-alanine ligase [Paenibacillus thiaminolyticus]
 gi|66731638|gb|AAY52005.1| VanA [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  162 bits (409), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +     +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKFGVWKMCEKPCAEWENSNCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSVLHGKSGEDGSIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYTIAKNAGIATPDFWVINKDDKPAIDAFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G++S  +          +     
Sbjct: 186 GADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA + +++   +Q  A   ++A+GCRG+SR D      +  + 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSVEVRGRIQETAKKIYKALGCRGLSRVDMFL-QDNGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG +  EL+  ++  A
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMVAAGITLPELIDRLIVLA 340


>gi|307705390|ref|ZP_07642249.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
 gi|307621053|gb|EFO00131.1| D-alanine-D-alanine ligase [Streptococcus mitis SK597]
          Length = 347

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|183599132|ref|ZP_02960625.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
 gi|188021357|gb|EDU59397.1| hypothetical protein PROSTU_02586 [Providencia stuartii ATCC 25827]
          Length = 367

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 145/347 (41%), Gaps = 55/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E EVSL S K   + L+   F V  I +++                    
Sbjct: 6   VGVIFGGKSTEHEVSLQSAKNIINGLDRDRFDVCLIGINKQGHWHEYDEADFLIHANDPA 65

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   L   +P    D+ F ++HGN GEDG +Q +L +  +
Sbjct: 66  RIALSTPKRSIAIIPGKTTQQFISLEDAQPLPQIDVIFPIVHGNLGEDGSLQGLLRMANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIK 131
           P+   G+L S+  MDK  +K+++   G+ V P I +        +       +  P  IK
Sbjct: 126 PFVGPGVLGSSACMDKDITKRLLRDAGLHVAPFITLTASDRTEANYEAVVKQLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+GI  +  +      L  +       ++LIE  V G E+ C V+G+     + 
Sbjct: 186 PANQGSSVGISKVTNESEFKAALDFAF--LFDMKVLIESAVKGREIECAVLGNEQPLASP 243

Query: 192 IAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      ++      V PA + +++  +++ +A  A++A+ C G+SR D 
Sbjct: 244 CGEIVLHDSFYAYHTKYIDENGASVVAPADLDVEVSDKIREIALQAYRALNCSGMSRVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                   V   EIN  PG T +S++P++    G +++ L+  ++E 
Sbjct: 304 FLTE-DNHVIINEINTLPGFTNISMYPKLWQQGGMTYQALISRLIEL 349


>gi|317506518|ref|ZP_07964316.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
 gi|316255187|gb|EFV14459.1| D-alanine-D-alanine ligase [Segniliparus rugosus ATCC BAA-974]
          Length = 358

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/345 (24%), Positives = 147/345 (42%), Gaps = 54/345 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           V+ GG+SSE E+S  S  +  + L+ + ++   + + +    VL    P           
Sbjct: 9   VVFGGVSSEHEISCLSAASILAQLDSSRYEAVPVGITKEGDWVLDRRPPEVLGDKLGGLP 68

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q +LE   +P
Sbjct: 69  QVDASAPRVALAVGRTGSGELRQVSDGALVATADVVFPVLHGPFGEDGTLQGLLEFANLP 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLK 134
           Y   G+ ASA  MDK + K ++   G+PV P   +       +      +  P  +KP +
Sbjct: 129 YVGCGVFASAACMDKTQMKVLLRGGGLPVGPYEALAPGEDVDEAALRDRLGLPLFVKPAR 188

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTE 191
           GGSSLG++ +++ + +P  +  +    +  ++L+E  + G E+ C               
Sbjct: 189 GGSSLGVVKVERWEDLPEAVAVAR--KYDPKVLVETGIAGREVECAVLEFPDGRVEASVL 246

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +   D Y +E KY +  +   +PA +   +  E++ LA  A + + C G++R DF   
Sbjct: 247 GEIVVPDAYDFETKYLNNIARLQVPADVSEPLASEIRALAVRAFETMDCSGLARVDFFI- 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                    E+N  PG T  S++P+M    G  + +LL  ++E A
Sbjct: 306 AEDGGPIINELNTLPGFTTSSLYPKMWEQTGLDYSKLLDTLIETA 350


>gi|169334678|ref|ZP_02861871.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257416|gb|EDS71382.1| hypothetical protein ANASTE_01081 [Anaerofustis stercorihominis DSM
           17244]
          Length = 358

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 87/337 (25%), Positives = 144/337 (42%), Gaps = 42/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + V+ GG S E +VSL S     + +    F ++ I +       +              
Sbjct: 7   VGVVFGGKSGEYDVSLLSAYNVINGINKEKFDITMIGITLEGKFYIYKGDVEKIKTNEWI 66

Query: 49  ------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                D+ F VLHG  GEDG +Q + E+++ PY    +LAS++ 
Sbjct: 67  NDSKNLISDFSLFDGDIINNVDIIFPVLHGQNGEDGRIQGLFEMMDKPYVGCEVLASSVC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKGGSSL 139
           MDK  +K++  S G+PV   +LV                  +  +  P  +KP+  GSS+
Sbjct: 127 MDKDIAKRIFRSVGIPVVDDVLVFNTDIETDKLLEATLDRCEENLPYPMFVKPVNMGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           GI   K   S+   LL++  ++    +        IE+                V   +F
Sbjct: 187 GISKAKDRDSLKEALLKAVKFDTKILVEKGINAREIEVAVLGNSHPEASYPGEIVSCKEF 246

Query: 200 YSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           Y YE KY S   S   +PAKI   I ++++  A  A +A+G  G+SR DF  D  S+ ++
Sbjct: 247 YDYEAKYLSGDGSRIDIPAKIDDKIIEKIRTYAVKAFKAVGGSGLSRVDFFLDKDSKDIY 306

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             E N  PG T +S++ +M  Y G  + +L+  +++ 
Sbjct: 307 LNEANTLPGFTNISMYAKMWDYMGIGYSDLIEKLIDL 343


>gi|78185108|ref|YP_377543.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9902]
 gi|123580800|sp|Q3AV89|DDL_SYNS9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78169402|gb|ABB26499.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9902]
          Length = 350

 Score =  161 bits (408), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 144/341 (42%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E EVS+ S       L        ++V    +D+            VLA 
Sbjct: 8   IGLVFGGYSGEHEVSIRSATTVIHGLRSGENSQRYRVIPFYIDQEGRWWGEAFANRVLAS 67

Query: 49  LKP----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            KP                       + + VLHG  GEDG VQ + +L+  P+  +G+L 
Sbjct: 68  QKPIEPPHSIETKGFRELPEGSETVQVWYPVLHGPNGEDGTVQGLFQLMRQPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKG 135
           SA+SMDK+  K   +  G+   P +                    +  +  P  +KP   
Sbjct: 128 SAVSMDKLAMKAAFAGAGLSQVPYVGLNASDLGDSARREHVLDRIEAELHYPCFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++  +    +        +E            V      
Sbjct: 188 GSSVGISKVRNRHELETGLDHAAQLDPRLVVEQGVDARELECAVLGRHQLRSSVVGEVRF 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y Y  KY++  ST V+PA++P  + + VQ+ A  A  A+G  G++R DF +D  S 
Sbjct: 248 DADWYDYTTKYTAGLSTTVIPAELPEGVAERVQQQALEACAALGVVGMARVDFFYDNTSH 307

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  EIN  PG T  S++P +   +G +  +L+  +V+ A
Sbjct: 308 QLWINEINTLPGFTSQSMYPMLWEASGVTLDQLVHKLVQSA 348


>gi|149006741|ref|ZP_01830427.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
 gi|147761656|gb|EDK68620.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP18-BS74]
          Length = 347

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVTFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|116493050|ref|YP_804785.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
 gi|122265486|sp|Q03EM9|DDL_PEDPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103200|gb|ABJ68343.1| D-alanine--D-alanine ligase [Pediococcus pentosaceus ATCC 25745]
          Length = 351

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 97/343 (28%), Positives = 155/343 (45%), Gaps = 56/343 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           +AVL GG S+ER VSLSSG    +AL   G+  + ID+                      
Sbjct: 3   IAVLAGGKSTERNVSLSSGSKITNALRSKGYDATMIDLFLGYELEDGQSYEDVFKSSNTS 62

Query: 39  ---------------------------DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
                                       ++V  +L     D  F  LHG  GE+G VQA+
Sbjct: 63  TDYEISDAVLTEEDIEELRTDGTVGLFGKNVLPILQAA--DFVFLALHGGDGENGKVQAV 120

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVI 130
           L+L  I YT SG LAS ++MDK  SK+++    +      +L  +  +  Q     P V+
Sbjct: 121 LDLNHIKYTGSGSLASGIAMDKAISKEIMLYNNIKTAQFAVLHAKDGIHPQLAFDYPMVV 180

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP  GGSS+G  ++  +  +   L  +      D++++E+++ G E + GV+   ++   
Sbjct: 181 KPNSGGSSIGTRIVHDEAELAESLKDAY--RFDDEIIVEEFITGREFSLGVVNGQAMPAI 238

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           EI V    +       +   +  V P +I  D++ E++R+A     A+G     R DFL 
Sbjct: 239 EIVVNDGWYDYEHKFQTGSTTKFVTPPEIEDDVHDEMKRVAVQTMDALGMTNYGRVDFLT 298

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +     V+ +E N  PGMTP+S+ P+ A  AG S+ +L   +V
Sbjct: 299 NDTG--VYVIEANNLPGMTPLSLLPQEAEAAGISYEDLCESIV 339


>gi|325285481|ref|YP_004261271.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
 gi|324320935|gb|ADY28400.1| D-alanine--D-alanine ligase [Cellulophaga lytica DSM 7489]
          Length = 324

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 147/322 (45%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A++MGG S+E ++SL SG      L    F + +I +                 D+S  
Sbjct: 5   IAIIMGGYSNEYKISLKSGNVAYKHLNSNKFNLYRIHILKDKWVYVDANDAESPVDKSDF 64

Query: 44  LVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            ++     +K D  FN +HG  GEDG +QA   L+ I  T      +AL+ +K      +
Sbjct: 65  SIIENGHKIKFDCVFNAIHGTPGEDGYLQAYFNLIGITQTACDFYQAALTFNKRDLLSTL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+  + ++  I      P  +K  K GSS GI  + K + +P  +  
Sbjct: 125 KPYGIKAAASYYLNKGDVVNEDEIINTVGLPCFVKANKAGSSFGISKVHKKEDLPKAIEN 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
           +      D+++IE ++DG E++ GV+              +    +    +     S  +
Sbjct: 185 AY--LADDEIIIEAFLDGTEVSVGVIMYNGEPKVLPITEITTENDFFDYEAKYEGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  +  ++V  +A   ++ +  +G SRS+F+F  +  + F LE+N  PG+T  SI 
Sbjct: 243 TPARITKEQEEKVSNIALRVYKILKMKGYSRSEFIF--VDNEPFMLEMNTTPGLTEESIL 300

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+ AA AG S  +L    + +A
Sbjct: 301 PQQAAVAGISLSQLFESAITEA 322


>gi|306824762|ref|ZP_07458106.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
 gi|304432973|gb|EFM35945.1| D-alanine-D-alanine ligase [Streptococcus sp. oral taxon 071 str.
           73H25AP]
          Length = 347

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|257452941|ref|ZP_05618240.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|317059482|ref|ZP_07923967.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
 gi|313685158|gb|EFS21993.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_5R]
          Length = 288

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 105/297 (35%), Positives = 166/297 (55%), Gaps = 14/297 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG+SSE+EVS+ SG+A   +L+  G+    + +  +++       + DLA+  LH
Sbjct: 3   IAVFMGGVSSEKEVSIRSGEAILESLQRQGYDAYGVVLTEKNMISAFQEEQYDLAYLALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +Q++LELL   YT SG+ ASA+SMDK      + +  +     + + +    
Sbjct: 63  GGAGENGEIQSVLELLGKKYTGSGVAASAISMDK------LLTKKIASLEGVRMAKTFTT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P ++KP K GSS+GI V    + +   L +          +IE+Y+ G ELT 
Sbjct: 117 VAEISRYPVMVKPSKDGSSVGIHVCNNQEEVEKALQEI-----SGYAMIEEYIQGEELTV 171

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I    +D Y YE KY++  S H  PA+I    Y+E    A   H+A+G
Sbjct: 172 GVLNGKALGVLKIIPQAADIYDYESKYAAGGSIHEFPARIAKIAYEEAMVNAVKIHEALG 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G+SRSDF+      +V++LE+N  PGMT  S+ P++A   GY+F ++   +VEDA
Sbjct: 232 MKGVSRSDFIL--KDDQVYFLEVNACPGMTKTSLVPDLATLQGYTFDDITRILVEDA 286


>gi|154482959|ref|ZP_02025407.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|149736243|gb|EDM52129.1| hypothetical protein EUBVEN_00657 [Eubacterium ventriosum ATCC
           27560]
 gi|254966999|gb|ACT97535.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 99/337 (29%), Positives = 158/337 (46%), Gaps = 46/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+EREVS++SG     AL         +DV                      
Sbjct: 7   IVVLCGGNSTEREVSINSGSMVCEALRKKNHNAILMDVYFGLEDIDIFEKSASKYDVESV 66

Query: 39  DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
            +++  +                     K D+ F  LHG  GEDG  QA  +L  I YT 
Sbjct: 67  KKNIQSLSDKVSEDRRSFFGNNVIEICQKADIVFMALHGKNGEDGKCQAAFDLYGIKYTG 126

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGGSSL 139
           SG LASA+ MDK  +KQ+  S GVP   S+ + +   T    + +  P V+K   GGSS+
Sbjct: 127 SGHLASAIGMDKGVTKQIFMSKGVPTAKSVWIKKGESTDLKDYGMKVPVVVKACNGGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G++++ ++      +         +Q+L+E ++ G E + GV+   +L      +P+  +
Sbjct: 187 GVVLVHQESEYEDAVKTCFEL--DNQILVEDFIKGREFSIGVINKKAL-PVVEIIPRDGW 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ K  +  +  V PA +  ++ K++Q++A  A  AIGC   +R+D + D     +F 
Sbjct: 244 YDYKNK-YNGATEEVCPANLNDELTKKIQKVAEDACNAIGCEPYARADVMMDA-DGNMFC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           LE+N  PGMT  S+ P+ A   G  F  L  ++VE +
Sbjct: 302 LEVNTLPGMTATSLVPQEAKAVGMDFPTLCDYLVELS 338


>gi|330957774|gb|EGH58034.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 363

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 158/346 (45%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +               
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRWLRFDEADYLVNANDPA 64

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   +   KP    D+ F ++HG FGEDG +Q +L +L I
Sbjct: 65  RIRLSRSGKQLSLLPGSTGGQLVEVETGKPLASIDVVFPLIHGAFGEDGALQGLLRMLAI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P             D+   +  P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFLVLTRGETLAFADAVAQLGLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+ +  V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNHAPQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAEMPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TDA-RQIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|291542820|emb|CBL15930.1| D-alanine--D-alanine ligase [Ruminococcus bromii L2-63]
          Length = 349

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 141/340 (41%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG S+E EVSL S  +    +    + +  I + R+        +          
Sbjct: 6   IAVIFGGNSTEYEVSLQSAFSVFENINHDKYDIIPIGITRNGDWYHYKGRYENIANNTWS 65

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            DL F +LHG  GEDG +Q + EL  IP
Sbjct: 66  GDRDNLYPVTVSVSHSQKGIWEFDEDQYTAVHIDLVFPILHGKNGEDGTLQGMFELSGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPL 133
                 LASAL MDK R+ ++VS  GV V  S+   R   ++        +S P  +KP+
Sbjct: 126 VIGCNTLASALCMDKDRAHKLVSLAGVKVPKSVTFKRSEKNTALKKIETELSYPLFVKPV 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  + +   I   +  +   +    +        +      + + ++   +  
Sbjct: 186 RAGSSFGITKVTEQAEINTAIESAFEHDTEVIVEEAIGGFEVGCAILGIDNLTVRRIDEI 245

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              + F+ Y  KY+   S   +PA++     K VQ  A   ++A+GC G +R D  + P 
Sbjct: 246 ELSNGFFDYTEKYTLKTSKIHMPARLSPKEEKRVQETAVAIYKALGCSGFARVDMFYTP- 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           S ++ + E+N  PG+T  S +P M    G SF ++L  ++
Sbjct: 305 SNEIIFNEVNTIPGLTSHSRYPNMMKGIGLSFADMLDKLI 344


>gi|72161037|ref|YP_288694.1| D-alanyl-alanine synthetase A [Thermobifida fusca YX]
 gi|71914769|gb|AAZ54671.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 371

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 155/360 (43%), Gaps = 61/360 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE E+S  +  +  SA++   + +  I + R     L    P         
Sbjct: 9   VAVIFGGRSSEHEISCVTAGSVMSAIDTDRYDILPIGITRDGDWRLVTADPSELAIVDGK 68

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+   +LHG FGEDG +Q +LEL 
Sbjct: 69  LPAVPDSGARLALALDTPGAFLEVAPDSLPRLVGQVDVVLPLLHGPFGEDGTIQGLLELA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127
            + Y  +G+ ASA SMDK+  K ++++ G+   P + V+                 +   
Sbjct: 129 GVRYVGAGVFASAASMDKVFMKALLTAQGLKTGPYLAVSDRAWTRHRKRVLDNIAALGGV 188

Query: 128 YVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
             +KP + GSS+GI  V     +  +     ++  H  ++++E  + G E+ CGV+    
Sbjct: 189 VFVKPARAGSSIGISRVPDATDTAAVTEAIEAARAHDPKVIVEAGIQGREIECGVLESLD 248

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAHQAIGC 240
               ++++P     +    +    + +       +PA +P ++ + V++LA  A  A+GC
Sbjct: 249 GGEPDVSLPAEIHVAEGYDFYDFEAKYLSNSGLSIPADLPDEVTQRVRKLAAEAFDALGC 308

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G++R DF +     +++  EIN  PG TP S FP+M A +G  +  L+  ++  A   R
Sbjct: 309 EGLARVDFFY-GDDGEIYINEINTMPGFTPASAFPQMWAASGLDYPALVDRLIRTALVRR 367


>gi|332877310|ref|ZP_08445058.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332684693|gb|EGJ57542.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 335

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/330 (23%), Positives = 142/330 (43%), Gaps = 37/330 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S L+   ++V  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSLRSAEGIHSFLDKERYEVYIIEIKGMTWEAHLKDGSRSNVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++PD A+  +HG  GE+G++Q   +L+ +PY+ S +L  A++ +K    Q +
Sbjct: 65  SFMEGGKRIRPDFAYITIHGTPGENGILQGYFDLIHLPYSTSDVLVEAMTFNKFTLNQYL 124

Query: 101 SSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV       V           +    I  P  +KP  GGSS G+  +K    I   +
Sbjct: 125 KGFGVSVSESLIVRKGFEHLITDDEIIEKIGLPCFVKPNAGGSSFGVTKVKSADQIHEAI 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212
               +    D++++E +++G E++ G       +V   A        +       +    
Sbjct: 185 --LKAMRESDEVMVEAFMEGTEISQGCYKTQEKEVVLPATEVVSDNEFFDYNAKYNGQVR 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK-------VFWLEINVQ 265
            + PA++  +  + V  +  + +  +GC GI R D++    + +       +  LE+N  
Sbjct: 243 EITPARLKEETAERVSLITSMIYDILGCNGIIRVDYIITHTTDENGKERERINMLEVNTT 302

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           PGMT  S  P+    AG   +++L  ++E+
Sbjct: 303 PGMTATSFIPQQVRAAGMDMKDVLTDIIEN 332


>gi|260437788|ref|ZP_05791604.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
 gi|292809812|gb|EFF69017.1| D-alanine--D-alanine ligase A [Butyrivibrio crossotus DSM 2876]
          Length = 356

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 153/350 (43%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLKP-- 51
           +AVL GG SSE ++S  S      +++   + V  + + +    +       +   K   
Sbjct: 6   VAVLFGGQSSEHDISCISAATVIESIDREKYDVITVGITKDGRWIKTDNVEDIKSGKWRE 65

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+ F VLHG +GEDG +Q ILEL  IPY   
Sbjct: 66  GKVTMILSPDRIHKGFVEIEDGKAEVTEVDVVFPVLHGLYGEDGTIQGILELAGIPYVGC 125

Query: 83  GILASALSMDKMRSK---------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           G++ASA+SMDK+ +K         +      V       +++     +  +  P  +KP 
Sbjct: 126 GVVASAVSMDKLFTKKIVDGLKDVRQAKYVPVRRYELKEMDKVLDGIEERLPYPVFVKPS 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS G+        +   L  ++   H +++L+E+ + G E+ C V+G + +  + + 
Sbjct: 186 NAGSSKGVSKAGDRAGLEKALRLAA--EHDEKILVEETIVGREIECAVLGTSDVKASGVG 243

Query: 194 V----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                  + FY ++ KY++  S  V+  ++P     EV+  A    +A+   G+SR DF 
Sbjct: 244 EILAADSAAFYDFDAKYNNAESKTVINPELPDGKTDEVRNDAVRIFKAVDGFGLSRVDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +  +  V + EIN  PG T +S++P + A  G   +EL+  ++ +A   
Sbjct: 304 IENGTNDVVFNEINTMPGFTSISMYPMLWADRGIEKKELVDELINEAFTR 353


>gi|332072839|gb|EGI83320.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA17545]
          Length = 347

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S +    A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAENVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|67479935|gb|AAY67968.1| D-alanine:D-serine ligase [Enterococcus gallinarum]
          Length = 343

 Score =  161 bits (408), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 148/338 (43%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++   L              
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYLYQGNLANVRNDTWL 63

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 + PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  +    +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSALTTAF--AYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|113955096|ref|YP_729951.1| D-alanyl-alanine synthetase A [Synechococcus sp. CC9311]
 gi|123132673|sp|Q0IC71|DDL_SYNS3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113882447|gb|ABI47405.1| D-alanine--D-alanine ligase [Synechococcus sp. CC9311]
          Length = 353

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 90/346 (26%), Positives = 153/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45
           + V+ GG S E  VS+ S     +AL++      F+V  + +D+                
Sbjct: 8   IGVVFGGASGEHAVSIRSAITVINALQEGQNRDHFEVVPLYIDQEGRWWPEHIANSVLEQ 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 + + + D+ F VLHG  GEDG VQ +  L+  PY  SG
Sbjct: 68  KQPLAEDSLPHPLPPAGFRSLPIDNDRVDVWFPVLHGPNGEDGTVQGLFTLMGQPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+P  P + +N   ++            +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLPQVPYVGLNVADLNHPERQNKLVARIEAELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190
              GSS+GI   +    +   L +++   H  +L++E  V   EL C V         V 
Sbjct: 188 ANMGSSVGISKARHRDQLLAGLKEAA--RHDTRLVVEHGVSARELECAVLGRQQLKASVV 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                ++D+Y YE KY+   S  ++PA +P  +  ++Q +A  A  A+   G++R D  +
Sbjct: 246 GEISFEADWYDYETKYTDGCSQTLIPAPLPDQVSAQIQAIALQACTAVHAYGLARVDVFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D  S  ++  EIN  PG T  S++P +   +G +  +L+  +V  A
Sbjct: 306 DEKSGDIWLNEINTLPGFTSQSMYPMLWEASGVALPDLVAQLVHTA 351


>gi|269794439|ref|YP_003313894.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269096624|gb|ACZ21060.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 400

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 89/359 (24%), Positives = 146/359 (40%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S E  +S ++      A++   + V  + + R+   VL    PD        
Sbjct: 37  VVLLFGGRSGEHVISCATAAGVMRAIDRDRYDVVPVGITRTGQWVLVEDDPDRWAITDGR 96

Query: 53  --------------------------------------LAFNVLHGNFGEDGLVQAILEL 74
                                                 + F +LHG FGEDG +Q +LEL
Sbjct: 97  LPEVDATGTEVLLPLAVGQTALRVLEAGALPRVLGDVDVVFPLLHGPFGEDGTLQGMLEL 156

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
            ++ Y  +G+LASA+ MDK   K V++  G+PV P  +V     D            +  
Sbjct: 157 ADVRYVGAGVLASAVGMDKHFMKLVLAGQGLPVGPYTVVPPGEWDRDAEAVTARVAGLGL 216

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP + GSSLGI  +     +P  + ++    H  ++++E  + G E+ C V+G   
Sbjct: 217 PVFVKPARAGSSLGISKVDDLADLPAAVAEAR--RHDPKVIVEAGIVGREIECAVLGGRR 274

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQA 237
            +    ++P     +                       PA +  ++  EVQ +A    +A
Sbjct: 275 GERARASLPGEIQVTDTTHAFYDFEAKYLSEQSVELTCPADLSPELVAEVQDVAVRTFEA 334

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   G+SR D        +V   EIN  PG TP S++P M   +G  + EL+  +VE A
Sbjct: 335 VSGEGLSRVDVFVTEA-GEVVVNEINTMPGFTPFSMYPRMWDRSGLPYAELITELVELA 392


>gi|255325982|ref|ZP_05367072.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
 gi|255296997|gb|EET76324.1| D-alanine--D-alanine ligase [Rothia mucilaginosa ATCC 25296]
          Length = 372

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 83/361 (22%), Positives = 143/361 (39%), Gaps = 68/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++   + V  I + R     L   +          
Sbjct: 7   VALLCGGRSSEHPISLITAAGVLGAIDRTAYDVITIGITRDGRWYLTDEQQLAELTAGTR 66

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG VQ +LE
Sbjct: 67  GTAEFPEGTQQVFLPMGAGDSRLTLVDAEGNVTRTAPVDVVFPLLHGPFGEDGTVQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LI 124
           + ++ Y   G+ ASA+ MDK   K    S G+ V P  +V     + +           +
Sbjct: 127 MADLRYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTNRQWEHEDREQILERVLKL 186

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS GI  +   + +   + ++    H  +++IE  + G E+ C V+  
Sbjct: 187 GFPMFVKPTRAGSSFGITKVDSVEELVPAIEEAR--RHDPKIIIEAGIVGREIECAVLDG 244

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAH 235
              ++   + P       +                     PA +P D+ + ++ LA  A 
Sbjct: 245 HHGEMPRASYPGEIEVVDQDHGFYDFEAKYVSESSAVTVCPANLPQDVQERLRELAVKAF 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+   G+SR+DF +     ++   E+N  PG TP+S++  M    G S+ +L+  ++  
Sbjct: 305 LALDGEGLSRADFFYTE-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTDLISELLTL 363

Query: 296 A 296
           A
Sbjct: 364 A 364


>gi|148988718|ref|ZP_01820151.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|148997722|ref|ZP_01825286.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|149001955|ref|ZP_01826909.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|168575140|ref|ZP_02721103.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194397559|ref|YP_002038285.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae G54]
 gi|237650677|ref|ZP_04524929.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI 1974]
 gi|237822435|ref|ZP_04598280.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae CCRI
           1974M2]
 gi|307068296|ref|YP_003877262.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|226696391|sp|B5E721|DDL_STRP4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4009465|gb|AAC95435.1| D-Ala-D-Ala ligase [Streptococcus pneumoniae G54]
 gi|147756221|gb|EDK63263.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP11-BS70]
 gi|147759764|gb|EDK66754.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP14-BS69]
 gi|147925919|gb|EDK76994.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP6-BS73]
 gi|183578923|gb|EDT99451.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae MLV-016]
 gi|194357226|gb|ACF55674.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae G54]
 gi|301794652|emb|CBW37103.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae INV104]
 gi|306409833|gb|ADM85260.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           pneumoniae AP200]
 gi|332074006|gb|EGI84484.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41301]
          Length = 347

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|254967034|gb|ACT97553.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|254967054|gb|ACT97564.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 367

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 95/340 (27%), Positives = 158/340 (46%), Gaps = 52/340 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG S+ER++S+ +      +L   G+  + +DV                      
Sbjct: 27  IVVLAGGTSTERDISILTSTKVCESLRRNGYNANIVDVFFGIDSENVDNFFNNDNDLEKL 86

Query: 39  -------DRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74
                     V   L                    K D+ F  LHG+ GEDG +QA  EL
Sbjct: 87  CKYLKNQTPDVEKELEARKALGKGFFGDNVLELCQKADIVFMGLHGSNGEDGKIQAAFEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + I YT +  ++SA+SM K  +K+V+   G+P+   I +++        +  P V+KP  
Sbjct: 147 MGIKYTGTDYISSAISMSKELTKKVLVPEGIPMPKGIALHKGHKVEY--VPFPCVVKPCC 204

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GGSS+G+ ++  ++     L  +   ++ D +L+E+++ G E + GV+   +L V     
Sbjct: 205 GGSSVGVSIVNSEEEFKRALTDAF--SYEDNILVEEFIKGREFSVGVLNGKALPVI-EIE 261

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P   FY Y+ KY +  +    PA +P +I +++QR A  A +  G    +R D L +   
Sbjct: 262 PLDGFYDYKNKYKAGATKETCPANLPKEISEKMQRWAEKACETAGVTTYARVDELLNE-D 320

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ LEIN  PGMT  S+ P+ AA  G S+ EL   ++E
Sbjct: 321 GDIYCLEINTLPGMTGTSLLPQEAAAVGMSYDELTKKIIE 360


>gi|124515885|gb|EAY57394.1| D-alanine--D-alanine ligase [Leptospirillum rubarum]
          Length = 303

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 91/298 (30%), Positives = 142/298 (47%), Gaps = 6/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +      +   I
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIESGERLTPDKI 120

Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P   ++KP   GSS+G+  +     +P  L    +  H  ++L+E ++ G E+   ++
Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFPDLPQAL--LEAEKHSSRILVEPFLPGREVQSAIL 178

Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               L     +      FY+Y  KY    S H+ PA +  D+   ++     A   +  R
Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVASRLEEATLRAFGLLELR 238

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R D L  P   +V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  A   
Sbjct: 239 GVARMDTLVLP-DGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSARLD 295


>gi|307707045|ref|ZP_07643842.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
 gi|307617571|gb|EFN96741.1| D-alanine--D-alanine ligase [Streptococcus mitis SK321]
          Length = 347

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +      +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+     T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDAKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|169832697|ref|YP_001695052.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Hungary19A-6]
 gi|229486021|sp|B1I733|DDL_STRPI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168995199|gb|ACA35811.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 347

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEERAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEELTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGITYPDLIERLVELA 335


>gi|38233721|ref|NP_939488.1| D-alanyl-alanine synthetase A [Corynebacterium diphtheriae NCTC
           13129]
 gi|81401496|sp|Q6NHK6|DDL_CORDI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|38199982|emb|CAE49651.1| D-alanine--d-alanine ligase [Corynebacterium diphtheriae]
          Length = 365

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 151/349 (43%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS  S  A  + L+   ++V  + +       +    P         
Sbjct: 18  VAIIYGGRSSEHSVSCVSAGAIMAHLDPQRYEVFPVGITHDGVWTVGESDPSRLKTVDRV 77

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG +Q + EL  +P
Sbjct: 78  MPEVQFTREVSLSVNPTTAGELCFEDGSLYAKVDVVFPVLHGRFGEDGTIQGLFELSGVP 137

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++        + +  +  P  +KP +G
Sbjct: 138 YVGTGVLSSACGMDKEFTKKLMAAEGLPVGKEVILRGSETLTEEHKRELGLPVFVKPARG 197

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +         L  +    H  ++++E  + G+E+ CGV+      +      
Sbjct: 198 GSSIGISRVADWSEWDAALSLAR--EHDSKVIVEAEIVGVEVECGVLERIDGSLMASVPA 255

Query: 196 KSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +          FY ++ KY     T  +PA    +    +Q L+  A  A+ CRG++R D
Sbjct: 256 QLQDTDEGDEGFYGFDTKYLDDVVTAHIPAPFDAETTALIQELSLKAFTALSCRGLARVD 315

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P++    G  + +LL  ++E A
Sbjct: 316 FFVT--DHGPVLNEINTMPGFTPISMYPQVFEATGIGYAQLLDNLIEQA 362


>gi|126434497|ref|YP_001070188.1| D-alanyl-alanine synthetase A [Mycobacterium sp. JLS]
 gi|167012328|sp|A3PXS0|DDL_MYCSJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126234297|gb|ABN97697.1| D-alanine--D-alanine ligase [Mycobacterium sp. JLS]
          Length = 371

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 66/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F V  + +      VL   +P         
Sbjct: 10  VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 70  LPEVSAESGTALALPADPGRRGELVSLSPAPAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++     +     +  +  P 
Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
            +KP +GGSS+G+  +     +P  +  +    H  ++++E  + G EL CGV+      
Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAIEAAR--RHDPKVIVEAGIAGRELECGVLEYPDGR 247

Query: 187 --------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   + V  +   +  FY +  KY    +   +PAK+  D+  E++RLA  A +AI
Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MV+ A  
Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365

Query: 299 L 299
            
Sbjct: 366 R 366


>gi|108798897|ref|YP_639094.1| D-alanyl-alanine synthetase A [Mycobacterium sp. MCS]
 gi|119868012|ref|YP_937964.1| D-alanyl-alanine synthetase A [Mycobacterium sp. KMS]
 gi|123179010|sp|Q1BAP6|DDL_MYCSS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167012329|sp|A1UEB6|DDL_MYCSK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|108769316|gb|ABG08038.1| D-alanine--D-alanine ligase [Mycobacterium sp. MCS]
 gi|119694101|gb|ABL91174.1| D-alanine--D-alanine ligase [Mycobacterium sp. KMS]
          Length = 371

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 97/361 (26%), Positives = 158/361 (43%), Gaps = 66/361 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F V  + +      VL   +P         
Sbjct: 10  VAVVYGGRSSEHAISCVSAGSILRNLDPERFDVVAVGITPDGSWVLTDGRPETLAITDGR 69

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 70  LPEVSAESGTALALPADPGRRGELVSLSPAAAGEVLAAVDVVFPVLHGPYGEDGTIQGLL 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++ + G+PV   +++     +     +  +  P 
Sbjct: 130 ELAGVPYVGAGVLASAAGMDKEFTKKLLVAEGLPVGDHVVLRPGRANVTLDERERLGLPV 189

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-- 186
            +KP +GGSS+G+  +     +P  +  +    H  ++++E  + G EL CGV+      
Sbjct: 190 FVKPARGGSSIGVSRVSDWAELPAAIEAAR--RHDPKVIVEAGIAGRELECGVLEYPDGR 247

Query: 187 --------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   + V  +   +  FY +  KY    +   +PAK+  D+  E++RLA  A +AI
Sbjct: 248 VDASTIGEIRVAGVRGREDGFYDFATKYLDDGAELDVPAKVEDDVADEIRRLAIRAFRAI 307

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MV+ A  
Sbjct: 308 DCQGLARVDFFLT--DDGPVVNEINTMPGFTTISMYPRMWAASGVDYPTLLAAMVDTAVA 365

Query: 299 L 299
            
Sbjct: 366 R 366


>gi|54114873|dbj|BAD60926.1| D-Ala-D-Lac ligase [Enterococcus raffinosus]
 gi|109240383|dbj|BAE96117.1| D-Ala:D-Lactate ligase [Enterococcus raffinosus]
          Length = 343

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVVCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  + +  +  ++L+E+ V G E+ C ++G+ +  +T         + +   
Sbjct: 186 RAEELQAAV--TEAGKYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG++  E+L  ++
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337


>gi|270292368|ref|ZP_06198579.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
 gi|270278347|gb|EFA24193.1| D-alanine--D-alanine ligase [Streptococcus sp. M143]
          Length = 347

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKITEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++R A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|11527846|gb|AAG37026.1|AF277571_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|27461217|gb|AAM09849.1| D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  161 bits (408), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 144/335 (42%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS+ S    A+ +    ++   I + +S    L              
Sbjct: 6   IAVLFGGCSEEHDVSVKSAMEVAANINKEKYQPFYIGITKSGAWKLCDKPCRDWENYAGY 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVISPDRRIHGLLIQKDGGYESQPVDVVLPMIHGKFGEDGTIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++ +        +S P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAETLSYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   + ++    +  ++L+E+ V G E+ C ++G+ +  +T         + +   
Sbjct: 186 RAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILGNGNDLITGEVDQIELKHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYRVLGCRGLARIDLFLRE-DGSIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M   AG++  E+L  ++
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLI 337


>gi|126696830|ref|YP_001091716.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9301]
 gi|166198497|sp|A3PEE0|DDL_PROM0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126543873|gb|ABO18115.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9301]
          Length = 355

 Score =  161 bits (407), Expect = 9e-38,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 139/343 (40%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E EVS+SS K    A    +    F V    +++    +           
Sbjct: 9   IGLIFGGHSNEHEVSISSAKTVFKAFKAQINRERFTVKAFYINKYGDWLDSDISEKILTG 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +     D+ F +LHG  GEDG +  ++   + P    
Sbjct: 69  EIENYKTKKQEIFNQEKINFLDGIEFQNIDVWFPLLHGFNGEDGSIHGLIRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++     ++ +             +  P  +K
Sbjct: 129 GIIGSALGMDKILMKTIFSNHKLPQVNYLVFQNEDLNDKQVKNKIINEILKKLKFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +K +  I L L ++   +    +     V  IE               
Sbjct: 189 PSNSGSSLGISKVKNESEILLALEKAWGIDPRILIEEGLEVREIECGIIGNSKLITSEIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +SD+Y Y+ K    N+  ++PA+I   I  E++ +A  + +A+   G +R DF  +
Sbjct: 249 EVNYESDWYDYDSK-YHSNNKIIIPAEIDSKITNEIKEIAIKSCRALNIFGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S K+   EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 308 KSSNKILLNEINTIPGFTKNSMFPMLWEASGLKIEQLVAKLVD 350


>gi|157413868|ref|YP_001484734.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9215]
 gi|167012330|sp|A8G6B7|DDL_PROM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157388443|gb|ABV51148.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9215]
          Length = 355

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 141/343 (41%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E EVS+SS K    A    +    FKV    +D+    +           
Sbjct: 9   IGLIFGGYSNEHEVSISSAKTVFQAFNSEINKKRFKVKSFYIDKYGDWLDNDLSEKILND 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +     D+ F +LHG  GEDG +  +L+    P    
Sbjct: 69  EIKSNNIKKQEIVNQQKINFLDGIEFQNIDVWFPLLHGLNGEDGSIHGLLQYTRKPIVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131
           GIL SA+ MDK+  K + S+  +P    +                  +    ++ P+ +K
Sbjct: 129 GILGSAIGMDKIMMKTIFSNLKIPQVNYLAFQNEDLDDREVKKKVINEILKKLNFPFFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +  +  I   L ++   +    +     V  IE       +       
Sbjct: 189 PSNSGSSLGISKVINESEILQSLEKAQKIDSRILVEEGLEVREIECGIIGNSELLTSEIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +SD+Y Y+ K    N+  ++PA+I   I KE++++A  + +A+   G +R DF  +
Sbjct: 249 EIKYESDWYDYDSK-YYSNNKIIIPAEIDSKITKEIKKIAIQSCRALNIFGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S K+   EIN  PG T  S+FP +   +G +  +L+  +V+
Sbjct: 308 KSSNKILLNEINTIPGFTTNSMFPMLWKASGLNIEQLVAKLVD 350


>gi|168483459|ref|ZP_02708411.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
 gi|172043156|gb|EDT51202.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1873-00]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFGQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIDEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|225859426|ref|YP_002740936.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae 70585]
 gi|225721700|gb|ACO17554.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae 70585]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFIVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|225857287|ref|YP_002738798.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae P1031]
 gi|254767743|sp|C1CM10|DDL_STRZP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225724581|gb|ACO20433.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae P1031]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFAKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|315613579|ref|ZP_07888486.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
 gi|315314270|gb|EFU62315.1| D-alanine-D-alanine ligase [Streptococcus sanguinis ATCC 49296]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVDLA 335


>gi|225861499|ref|YP_002743008.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|254767744|sp|C1CST6|DDL_STRZT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225727438|gb|ACO23289.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|327389857|gb|EGE88202.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA04375]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRPALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|168491447|ref|ZP_02715590.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574225|gb|EDT94753.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC0288-04]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPVGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNVGISYPELIERLVDLA 335


>gi|325000509|ref|ZP_08121621.1| D-alanyl-alanine synthetase A [Pseudonocardia sp. P1]
          Length = 356

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 91/347 (26%), Positives = 149/347 (42%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  + L+   F+V  + + R    V     P         
Sbjct: 8   VAVVFGGRSSEHAISCVSAGSVLTHLDPERFEVVPVGISRDGAWVTGPSDPRELGISGRE 67

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F +LHG FGEDG +Q +LE+  +P
Sbjct: 68  LPEVDGTSDALVLPGEPGRGLIRLDAGEALSQVDVVFPILHGAFGEDGTIQGLLEMAGLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKG 135
           Y  +G+LASA+ MDK  +K+++ + G+ V   I++   T      +  +  P  +KP + 
Sbjct: 128 YVGAGVLASAVGMDKEFAKKLLRAEGLNVADGIVLRPGTDIGFADRDRLGLPLFVKPARA 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EI 192
           GSS+G+  +     +   + ++    H  ++L+E  V G E+ C V+      V      
Sbjct: 188 GSSMGVTRVTDPAGLDAAIAEAR--EHDPKVLVESAVPGREVECAVLEFPDGSVRASLPA 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +  +          S   +PAK+  +I   V+  A  A +A+  +G++R DF    
Sbjct: 246 ELRYNGEFYDFESKYLDVSELEIPAKLDDEITDSVRWKAVTAFRALDVQGLARVDFFVT- 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               +   E+N  PG TP S FP+M A  G  + ELL  MVE A   
Sbjct: 305 DDGHITVNEVNTMPGFTPSSAFPKMWAVTGLDYGELLTTMVETALAR 351


>gi|31794157|ref|NP_856650.1| D-alanyl-alanine synthetase A [Mycobacterium bovis AF2122/97]
 gi|39930832|sp|Q7TXH9|DDL_MYCBO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|31619752|emb|CAD96692.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium bovis
           AF2122/97]
          Length = 370

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/360 (26%), Positives = 155/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F V  + +  +   VL    PD        
Sbjct: 10  VAVVFGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRE 69

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 70  LPQVKSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129
           L  +PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  
Sbjct: 130 LAGVPYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+       
Sbjct: 190 VKPARGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTL 247

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI 
Sbjct: 248 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAID 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           CRG++R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 308 CRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 365


>gi|322375680|ref|ZP_08050192.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
 gi|321279388|gb|EFX56429.1| D-alanine--D-alanine ligase [Streptococcus sp. C300]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 156/334 (46%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKIAPSSIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   ++  A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335


>gi|330877371|gb|EGH11520.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
          Length = 363

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +               
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSAGGQFVEVESGKPLTAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNNEAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVIANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|70725955|ref|YP_252869.1| D-alanyl-alanine synthetase A [Staphylococcus haemolyticus
           JCSC1435]
 gi|123660710|sp|Q4L7W2|DDL_STAHJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68446679|dbj|BAE04263.1| D-alanine-D-alanine ligase [Staphylococcus haemolyticus JCSC1435]
          Length = 356

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/339 (23%), Positives = 149/339 (43%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E +VS  + +   +A++   + V  I +                      
Sbjct: 6   ICIVYGGKSAEHDVSKLTAQNVLNAIDKERYLVDIIYITNDGLWKKKENITEEIKEIESL 65

Query: 49  --------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                  D  F +LHG  GEDG +Q + E+L++PY  +G+LA++
Sbjct: 66  NMTDIEAGEITILLKESSNGKPYDAIFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+    G+P  P I   R   +          +  ++ P  +KP   GSS+
Sbjct: 126 SSMDKLVMKQLFEHRGLPQLPYISFLRSEYEKYEGNIIKLVKDKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKS 197
           GI     +  +   + ++       +L+IEQ ++  E+   V+G+   + T     +   
Sbjct: 186 GISKCNNEDELKSGIEEAF--QFDRKLVIEQGINAREVEVAVLGNDYPETTWPGEVIKDV 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y+ KY     +  +PA++  ++   ++ +A  A +A  C G+ R+DF       ++
Sbjct: 244 AFYDYKSKYKDGKISLQIPAELDEEVQMTLRNMALEAFKATDCSGLVRADFFVTE-DNQI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E N  PG T  S++P +    G S+ +L+  +++ A
Sbjct: 303 FINETNAMPGFTAFSMYPSLWENMGLSYSDLITKLIDLA 341


>gi|259047321|ref|ZP_05737722.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
 gi|259036017|gb|EEW37272.1| D-alanine--D-alanine ligase [Granulicatella adiacens ATCC 49175]
          Length = 357

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 147/346 (42%), Gaps = 51/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V+ GG S+E ++S+ +  +    +    + V  + + +    +               
Sbjct: 3   VVVIYGGKSAEHDISILTAGSIIKEIYFEYYDVEPVYITKEGTWLKGEALKAPVAFDQAL 62

Query: 50  -----------------------------KPD-LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         PD + F +LHG  GEDG +Q + E+L++PY
Sbjct: 63  RLTEGLEARFATVEGEVSTGVRIQPSDIAGPDTVVFPILHGPNGEDGTIQGLFEILDLPY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVI 130
              G+LASA  MDK+ SK +    G+P  P +   +              +  +  P  +
Sbjct: 123 VGCGVLASANGMDKIASKHLFQQAGIPQVPFVPFVKADFKKSPEAIYNRIEGTLRYPVFV 182

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        +E+      + +  V 
Sbjct: 183 KPANMGSSVGISKATNREELTAAIEEALKYDRRIVVEQGIDAREVEVAVLGNDEVNTSVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V ++ FY Y  KY +  +T  +PA IP ++  +++  A  A +AI   G++R DF  
Sbjct: 243 GEVVKQAGFYDYNEKYINNTTTLQIPAAIPEEVSAKIREYAETAFRAIDGSGLTRCDFFL 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +++VF  E+N  PG T  S++P++    G S+++L+  ++  A
Sbjct: 303 TE-TQEVFINEVNTMPGFTQFSMYPKLWEAMGISYKDLVEELIRLA 347


>gi|16612079|gb|AAL27442.1|AF430807_7 VanE [Enterococcus faecalis]
          Length = 352

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/340 (27%), Positives = 161/340 (47%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG+SSE EVSL S  A    +E   + V +I +       L              
Sbjct: 4   VAIIFGGVSSEYEVSLKSAVAIIKNMESIDYNVMKIGITEEGHWYLFEGTTDKIKKDRWF 63

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +KPD+ F VLHG +GE+G +Q + ELL+IPY   G
Sbjct: 64  LDESCEEIVVDFAKKSFVLKNSKKIIKPDILFPVLHGGYGENGAMQGVFELLDIPYVGCG 123

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLKGGSS 138
           I A+A+SM+K+   Q   + GV   PS+++ +            +   P  IKP + GSS
Sbjct: 124 IGAAAISMNKIMLHQFAEAIGVKSTPSMIIEKGQDLQKVDAFAKIHGFPLYIKPNEAGSS 183

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196
            GI  +++   +   + ++S   +  ++LI++ V G+E+ CG+       +   +     
Sbjct: 184 KGISKVERKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGCGILGNEQLVVGECDQISLV 241

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ +GC+G++R DF       +
Sbjct: 242 DGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQMKAKKLYRLLGCKGLARIDFFLT-DDGE 300

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   EIN  PG T  S FP M    G  ++E++  ++  A
Sbjct: 301 ILLNEINTMPGFTEHSRFPMMMNEIGMDYKEIIENLLVLA 340


>gi|15901506|ref|NP_346110.1| D-alanyl-alanine synthetase A [Streptococcus pneumoniae TIGR4]
 gi|111658549|ref|ZP_01409212.1| hypothetical protein SpneT_02000305 [Streptococcus pneumoniae
           TIGR4]
 gi|14973163|gb|AAK75750.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae TIGR4]
          Length = 347

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY   N T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|297171287|gb|ADI22293.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured actinobacterium HF0200_46I24]
          Length = 364

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 147/343 (42%), Gaps = 52/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+E EVS+ S ++  +A++   + V    +D+                      
Sbjct: 8   LLFGGRSAEHEVSVVSARSVYAAIDSYRYDVVLAGIDQQGRWYFGGKNSESLLSTSTVVP 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 L   + ++ F +LHG +GEDG +Q +LEL  + Y  +G
Sbjct: 68  DEQLPARLSTAGTNLVSENGDDLPDSEFEVVFPLLHGPYGEDGTIQGLLELAGLAYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134
           + ASA+ MDK+ ++ + ++ G+P     ++ R     +              P  +KP  
Sbjct: 128 VSASAVGMDKVLARAIFAASGLPQTQYSVIMRSEWRREQAPVLERLEEEHDYPLFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI  +   Q +   L  +S ++    ++     +  EL C +             
Sbjct: 188 LGSSVGISKVHDRQGLHAALELASRFDT-KLIIERSVENARELECAILGNDYPKASGVGE 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +P  +FY Y  KY    S  V+PA +     + VQ LA  A +AI C G++R D     
Sbjct: 247 IIPGGEFYDYTTKYIDERSQLVIPAVLEKSESEAVQELAIRAFKAIDCSGLARVDCFMC- 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               V   EIN  PG TP+S++P++ A AG  + +L+  +++ 
Sbjct: 306 SDGSVLVNEINTMPGFTPISMYPKLWAAAGIDYGDLIDRLIQL 348


>gi|238752552|ref|ZP_04614026.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709227|gb|EEQ01471.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 366

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 89/348 (25%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V  + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDTDKFDVMLLGIDKQGKWHVNDASSYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNRNVALIPGQENQQLIAADNAAVLAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG+L SA+SMDK  +K+++   G+ + P I        N         +  P  IK
Sbjct: 126 PFVGSGVLGSAVSMDKDITKRLLRDAGLNIAPFITLTRSNKDNYSFEQVTEKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C VMG+ S   + 
Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVALAF--DFDHKVLVESAIVGREIECAVMGNDSPQASV 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      ++PA I  D    ++ +A  A  A+ CRG++R D 
Sbjct: 244 CGEVVISDEFYSYDTKYINESGAQVIIPAAIDTDASDRIRAVALAAFSALECRGMARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 304 FLTP-DNTVIINEINTLPGFTNISMYPKLWRATGIGSTELITTLIELA 350


>gi|238755653|ref|ZP_04616989.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
 gi|238706166|gb|EEP98547.1| D-alanine--D-alanine ligase [Yersinia ruckeri ATCC 29473]
          Length = 363

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/347 (23%), Positives = 144/347 (41%), Gaps = 55/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP-- 51
            V+ GG S+E EVSL S K    A++   F+V+ + +D+            +L    P  
Sbjct: 2   GVIFGGKSAEHEVSLQSAKNIVDAIDTEKFEVTLLGIDKQGQWHVNDASSYLLHAENPAL 61

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F ++HG  GEDG +Q +L +  +P
Sbjct: 62  IALNHSNKNVALVPGQQQRQLIDANNASALSQLDVVFPIVHGTLGEDGSLQGLLRMANMP 121

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKP 132
           +  SG++ SA SMDK  +K+++   G+ + P I               +  +  P  IKP
Sbjct: 122 FVGSGVVGSAASMDKDVTKRLLRDAGLNIAPFITLTRANREQYGFEPVREKLGLPLFIKP 181

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  +   +     +  +   +   ++L+E  + G E+ C V+G+     +  
Sbjct: 182 ANQGSSVGVSKVCSAEEFTAAVELAF--SFDHKVLVESAIVGREIECAVLGNDQPKASLC 239

Query: 193 AVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                    Y      ++      V+PA +   +   ++ +A  A + + C G++R D  
Sbjct: 240 GEVVISDEFYSYDTKYISDSGAQVVIPAVLDAQVSDRIRAVAVEAFRTLECLGMARVDVF 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P   K+   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 LTP-DNKIIINEINTLPGFTNISMYPKLWRATGIDSTELITTLIELA 345


>gi|21222011|ref|NP_627790.1| D-alanine--D-lactate ligase [Streptomyces coelicolor A3(2)]
 gi|32171932|sp|Q9XAK7|VANL_STRCO RecName: Full=Putative D-alanine--D-lactate ligase; AltName:
           Full=Vancomycin resistance-like protein
 gi|5123870|emb|CAB45462.1| putative D-alanine:D-lactate ligase [Streptomyces coelicolor A3(2)]
          Length = 346

 Score =  161 bits (407), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGQDWENGDCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG  Q +LEL  IPY    + 
Sbjct: 66  PVVLSPDRSVHGLLVLEQGQYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE  V G E+ C ++G+    +       +  + +   
Sbjct: 186 RPEDLATAVESAR--RYDTKVLIEAAVVGSEVGCAILGNDPDLIVGEVDRIALSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +      +       V+PA IP +    VQ  A   ++A+GCRG+SR D        +V 
Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PGMT  S +P M A AG    E++   +  A   +
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344


>gi|260909667|ref|ZP_05916362.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260636226|gb|EEX54221.1| D-alanine-D-alanine ligase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 392

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 139/327 (42%), Gaps = 35/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE EVSL S +   S  +   + V  +D+                    D 
Sbjct: 67  IAIVCGGNSSEHEVSLRSARGLYSFFDKEKYNVYIVDIERMNWKVDLGNGERAIIDKNDF 126

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 127 SFVHEGEQVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 186

Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                     + V             +  +  P  +KP   GSS G+  +K    +   L
Sbjct: 187 RGFGVNVANSILVRRGEEFGIDERAVEAQLGMPCFVKPAADGSSFGVSKVKNIDQLAPAL 246

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            ++      D  +IE ++DG E++ G                V  ++F+ Y+ K  +   
Sbjct: 247 RKALM--EDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAK-YNGQV 303

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGM 268
             + PA+I  +  + V       ++ + C GI R D++       + K+  +E+N  PGM
Sbjct: 304 EEITPARIADETARRVAEETARIYEILNCNGIIRIDYILTKEPDGTDKINLIEVNTTPGM 363

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP S  P+    AG   +++L  +VE+
Sbjct: 364 TPTSFIPQQVRAAGMEMKDVLSEIVEN 390


>gi|329766888|ref|ZP_08258416.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
 gi|328837613|gb|EGF87238.1| hypothetical protein HMPREF0428_00113 [Gemella haemolysans M341]
          Length = 355

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 157/339 (46%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  +SL + K+  +A++   + V  I                        
Sbjct: 6   IGIIYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEQITSEIADQHDL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T  ++           +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKDAIIAEINEKLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   + ++       ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGIEEAL--KFDKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA +   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPVDTTLYPKFREMAATAFRAISGSGLVRADFFYTKE-GEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    S+ E++  + + A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFKLA 341


>gi|6634559|emb|CAB64459.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|322388818|ref|ZP_08062415.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
 gi|321140437|gb|EFX35945.1| D-alanine-D-alanine ligase [Streptococcus infantis ATCC 700779]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 99/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPSQDERL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  +  P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLRYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENKEELHQALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 EAKYIDNKITMDIPAKISDDVVAVMRKNAEAAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +VE A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVELA 335


>gi|148984109|ref|ZP_01817404.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|147923398|gb|EDK74511.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP3-BS71]
 gi|301800482|emb|CBW33121.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae OXC141]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISRS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|263418597|sp|P0CB57|DDL_STRPN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|297191831|ref|ZP_06909229.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197722023|gb|EDY65931.1| D-alanine-D-alanine ligase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 385

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 94/365 (25%), Positives = 149/365 (40%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHGISVVTAGAVLRAIDRTKYDVLPIGITADGRWALTADEPERMAITDRR 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D  F +LHG +GEDG +Q 
Sbjct: 79  TPNVEELAESDEGGVVLSVDPGSREVVYSEPGSVPKALGEVDAVFPMLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  +PY  SG+LASA+  DK   K+V  S G+PV P  ++                 
Sbjct: 139 LLELSGVPYVGSGVLASAVGQDKEYMKRVFVSFGLPVGPYEVIRPREWANDPAAARKKIV 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  IKP +GGSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 199 DFAGEHGWPLFIKPARGGSSMGITKVDDLAGLDDAIAEAQ--RHDPKILVESLLRGREIE 256

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  ++PA +  +   EVQRLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDSAAGLVPAPLTDEQTAEVQRLAVAA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P M   +G ++ EL+  +++
Sbjct: 317 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQESGVAYTELVDRLIQ 375

Query: 295 DASCL 299
            A   
Sbjct: 376 AALTR 380


>gi|168486961|ref|ZP_02711469.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
 gi|183570100|gb|EDT90628.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC1087-00]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|322377428|ref|ZP_08051919.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
 gi|321281628|gb|EFX58637.1| D-alanine--D-alanine ligase [Streptococcus sp. M334]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIAWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESVGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|254819105|ref|ZP_05224106.1| D-alanyl-alanine synthetase A [Mycobacterium intracellulare ATCC
           13950]
          Length = 381

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 154/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 21  VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPEGSWVLTDGDPAALAITDRR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 81  LPEVTAESGTELALSADPRRGGQLVALPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ ++ G+PV    ++         +    +  P  
Sbjct: 141 LAGVPYVGAGVLASAAGMDKEFTKKLFAAEGLPVGDYAVLRPSRARLRPEECQRLGLPVF 200

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +   +  +    H  ++++E  + G EL CGV+       
Sbjct: 201 VKPARGGSSIGVSRVASWDQLDAAVAAAR--RHDPKVIVEAAIVGRELECGVLEMPDGTV 258

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  +I   V++LA  A +AI 
Sbjct: 259 EASALGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDEIADTVRQLAVRAFKAID 318

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 319 CQGLARVDFFLTEDG--PVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 376


>gi|307709606|ref|ZP_07646059.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
 gi|307619642|gb|EFN98765.1| D-alanine--D-alanine ligase [Streptococcus mitis SK564]
          Length = 347

 Score =  161 bits (406), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 96/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++  SA+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMSAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKKVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--RYDSRVLVEQGVNAREIEVGLLGNYYVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 335


>gi|171778654|ref|ZP_02919750.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282611|gb|EDT48035.1| hypothetical protein STRINF_00602 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 348

 Score =  161 bits (406), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 92/331 (27%), Positives = 149/331 (45%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+EREVS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFFSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG VQ  LE+L++PY  + IL+S+++M
Sbjct: 67  TNDTVVESQKIKPSDIYEPGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+ P +     +            ++ P  +KP   GSS+GI   +
Sbjct: 127 DKISTKHVLESAGVPLVPYVTYVEGSDLDAAVAEVNDKLTYPVFVKPANMGSSVGISKAE 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + ++   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 DEAALRSAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|256786904|ref|ZP_05525335.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289770797|ref|ZP_06530175.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
 gi|289700996|gb|EFD68425.1| D-alanine:D-lactate ligase [Streptomyces lividans TK24]
          Length = 346

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 138/342 (40%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIVFGGSSEEHAVSVKSAQEVARNLDTEKYQPFFVGITKDGAWRLCDGPGPDWENGDCR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG  Q +LEL  IPY    + 
Sbjct: 66  PVVLSPDRSVHGLLVLEQGRYRSVRLDVVLPVLHGTLGEDGATQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYVVARSAGIATPDFWTVTGDETIDPGRLTYPVFVKPARSGSSFGVSKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE  V G E+ C ++G+    +       +  + +   
Sbjct: 186 RPEDLATAVESAR--RYDTKVLIEAAVVGSEVGCAILGNDLDLIVGEVDRIALSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +      +       V+PA IP +    VQ  A   ++A+GCRG+SR D        +V 
Sbjct: 244 HQEEQPENGSENSTPVVPADIPTEKRSLVQETAKAVYRALGCRGLSRVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PGMT  S +P M A AG    E++   +  A   +
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLSEVIDRTLSLALTGK 344


>gi|319947394|ref|ZP_08021626.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
 gi|319746334|gb|EFV98595.1| D-alanine-D-alanine ligase [Streptococcus australis ATCC 700641]
          Length = 348

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    + V    + ++   +               
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKYSVETYFITQAGDFIKTQTFEEKPAETERL 65

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+++
Sbjct: 66  MTNETIDWDAKATPSSIYQEGAVVFPVLHGPMGEDGSVQGFLEVLKLPYVGCDILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P  P +       +       +  ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVPYVAVLEGDDLEAKITLIEKELTYPVFTKPSNMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY Y
Sbjct: 186 ENQAELRKSLELAF--KYDSRVLVEQGVVAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PA+IP ++   ++  A LA +AIG +G+SR DF +      ++  E+
Sbjct: 244 EAKYIDNKITMAIPAEIPAEVAATMRHNAELAFRAIGGKGLSRCDFFYTE-DGGIYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +VE A
Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLAYPDLIERLVELA 336


>gi|313905746|ref|ZP_07839106.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
 gi|313469453|gb|EFR64795.1| D-alanine/D-alanine ligase [Eubacterium cellulosolvens 6]
          Length = 346

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 100/339 (29%), Positives = 149/339 (43%), Gaps = 48/339 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL  G S+ER VS+ SG     AL   G +   +DV                      
Sbjct: 3   IVVLAAGTSTERTVSIVSGTGICKALRSLGHQAILVDVFAGWEDVDVQTAFDDDYDVDEL 62

Query: 39  ---DRSVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
               R     +  +K                  D+ F  LHG+ GEDG VQA  +L+ I 
Sbjct: 63  AAYIRGFNDKIPEMKKTRREFFGPKVLDLCREADIVFLALHGSNGEDGRVQAAFDLMGIR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKG 135
           YT +  ++SA+SMDK R+KQV  + GV       V R        +  +  P +IKP  G
Sbjct: 123 YTGTDYISSAISMDKSRTKQVFDASGVSTPHGCTVYRGETRKTAEEFGLELPVIIKPCCG 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +   ++ +   L  + S       +IE+++ G E TC V+   +        P
Sbjct: 183 GSSVGVTICHTEKDVEAGLALAFSLE--QSAVIEEFIQGREFTCAVIDGKAY-PIVEIHP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           K  +Y +  KY +  +    PA+I  +   E+Q LA     A+G +   R DFL      
Sbjct: 240 KEGYYDFTNKYKAGATIETCPAQISEEKTAEMQNLAVKGAAAVGMQAYGRLDFLMRDGDE 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           K++ LE+N  PGMTP S+ P+ AA  G  +  L   M+E
Sbjct: 300 KLYCLEVNTLPGMTPTSLVPQEAAAVGIDYAHLCQLMIE 338


>gi|302524733|ref|ZP_07277075.1| VanA protein [Streptomyces sp. AA4]
 gi|302433628|gb|EFL05444.1| VanA protein [Streptomyces sp. AA4]
          Length = 345

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/337 (27%), Positives = 146/337 (43%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------AHLKP 51
           + V+ GGIS E  VS+ S +  A  LE   ++   + + +     L          H +P
Sbjct: 6   IGVIFGGISEEHPVSVKSAREVAKNLEPETYEPYWVGITKDGSWKLCDGPGEGWEDHGRP 65

Query: 52  -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRGVHGLLVEEQGKYEPVRLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVRS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  S G+        +          + P  +KP + GSS G+  + +
Sbjct: 126 SALCMDKSLAYLVTDSAGIATPNFWAGSANETVDAGKFTYPVFVKPARSGSSFGVTKVSR 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +P  L  ++      ++LIE+ V+G E+ C V+G+ +  +          + +   +
Sbjct: 186 EEDLPSALADAA--QFDSKVLIEEAVEGSEVGCAVLGNGADLIVGEPDQIRLSHGFFKIH 243

Query: 207 SSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              N        T ++PA IP +    VQ  A   ++A+GCRG++R D         V  
Sbjct: 244 QEDNPESGSENSTILVPAAIPAEARARVQATARTIYRALGCRGLARVDLFLLE-DGTVML 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG+T  S +P M A AG SF E+L  MV  A
Sbjct: 303 NEVNTFPGLTSYSRYPRMMAAAGLSFAEMLDRMVSLA 339


>gi|238797705|ref|ZP_04641200.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
 gi|238718457|gb|EEQ10278.1| D-alanine--D-alanine ligase [Yersinia mollaretii ATCC 43969]
          Length = 289

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/291 (33%), Positives = 151/291 (51%), Gaps = 13/291 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           SL SG+A  + L +AG     +D        L     D  F  LHG  GEDG +Q +LE 
Sbjct: 2   SLLSGQAVLAGLREAGIDAHGVDTKDFPVTQLKEQGFDKVFIALHGRGGEDGTLQGVLEF 61

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLIS 125
           L +PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   +             + 
Sbjct: 62  LGLPYTGSGVMASALTMDKLRTKWVWQALGLPISPYVALNRQQFETLSPDELAARVAKLG 121

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+G+  +     +   L+++    H   +LIE+++ G E T G++GD 
Sbjct: 122 LPLIVKPSHEGSSVGMSKVDHANELQGALVEAF--RHDTDVLIEKWLSGPEFTVGILGDD 179

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L    I VP    Y YE KY S  + +  P+ +  ++ +++  LA  A+QA+GC G  R
Sbjct: 180 VLPSIRIQVPGVF-YDYEAKYLSDETQYFCPSGLSTELEQQLAALALQAYQALGCSGWGR 238

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D + D      + LE+N  PGMT  S+ P  A   G SF +L+  ++  A
Sbjct: 239 VDVMQD-SDGNFYLLEVNTSPGMTSHSLVPMAARQYGLSFSQLVARILTLA 288


>gi|289450558|ref|YP_003474691.1| D-ala D-ala ligase N-terminal domain-containing protein
           [Clostridiales genomosp. BVAB3 str. UPII9-5]
 gi|289185105|gb|ADC91530.1| D-ala D-ala ligase N-terminal domain protein [Clostridiales
           genomosp. BVAB3 str. UPII9-5]
          Length = 371

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 63/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+S+E  VS  S     +AL++  + V  + + ++   +               
Sbjct: 4   VAVIFGGVSTEHLVSCRSAFYVINALKELKYDVLPLGITKAGDWLPLLVEPEVLLTEGWE 63

Query: 46  ----------------LAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76
                           +                 P++ F  +HG   EDG +Q  L + +
Sbjct: 64  QAAYKAWHKKHARGLKIKEVFNPRRFFTYFFGKNPEVIFPAVHGINCEDGTLQGFLNMTD 123

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------------QHLI 124
           IPY  SG+LASAL M+K+ +KQ+ ++  +PV P  +V R  +              + ++
Sbjct: 124 IPYVGSGVLASALGMNKIFAKQIWAANKLPVVPYYVVTRDDLAKDSIGLPETSAAVEKVL 183

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---- 180
           + P  +KP  GGSS+G         +   L + S      ++L+EQY+   EL       
Sbjct: 184 TYPIFLKPASGGSSVGTFKAGNRSELVAALGEVS--KFDREILLEQYIPARELEVAVLGN 241

Query: 181 -VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  +    +    + +      +++  S+  LPA +P D+ + +  LA  A++ +G
Sbjct: 242 LQPQAPMVGEILMQADVAFYDYETKYFAAGASSLALPADLPTDLAERILNLAQKAYKVLG 301

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF  D  S  ++  EIN  PG T  S++P+  A AG +   L+  +   A
Sbjct: 302 CKGMARVDFFLDRCSGALYLNEINSLPGFTATSLYPQAWAKAGINLPALVDQLCRLA 358


>gi|209549694|ref|YP_002281611.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM2304]
 gi|209535450|gb|ACI55385.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM2304]
          Length = 357

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L++            
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAIPVFITREGQWLLSNFEDGVLARPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICIVPGGRGRMLAIPAHGAPHELARIDILFPVLHGLHGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  S+ +      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARSVTMREDAAPSLAALESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q     L ++    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDRMLLAEEFVAGREIEFSVLEDAAGELFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA +P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPADLPEEVEAAMRDMAASAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G  + E++  +VE   A   R
Sbjct: 307 QDMRFLVNEINTIPGFTDISMYSKAMAASGVGYAEIIDRLVEHGLARAGR 356


>gi|28871324|ref|NP_793943.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|39931110|sp|Q87XJ6|DDLA_PSESM RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|28854575|gb|AAO57638.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|331015641|gb|EGH95697.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. lachrymans
           str. M302278PT]
          Length = 363

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 161/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +               
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNDEAQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 303 TEA-REIIINEVNTLPGFTSISMYPKLWQATGLSYAELIHRLIVLA 347


>gi|325568401|ref|ZP_08144768.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325158170|gb|EGC70323.1| D-alanine-D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 364

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 142/334 (42%), Gaps = 40/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK--PD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +    +    L+     PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLSEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +  + +   L ++  ++    +        IE+      D    +    V    FY 
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335


>gi|160903079|ref|YP_001568660.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
 gi|190359202|sp|A9BI46|DDL_PETMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160360723|gb|ABX32337.1| D-alanine--D-alanine ligase [Petrotoga mobilis SJ95]
          Length = 298

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 80/299 (26%), Positives = 143/299 (47%), Gaps = 14/299 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLH 59
           + ++ GG S ERE+SL+S K   +++ + G+K   +D +D      + + K   AFNV+H
Sbjct: 3   IPIITGGKSKEREISLTSAKNVFNSISNLGYKPVILDLIDDDFINKIQNYKF--AFNVVH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G++GEDG + ++LE+L I YT S       + DK     +  +       ++        
Sbjct: 61  GDYGEDGRLPSLLEILGIDYTCSNPETCIATYDKFIFYSLFKNYIQMPQTTLTNKLILPP 120

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            +     P++IKP K GSS G+ +I  +      L +        ++L+++Y+ G E+T 
Sbjct: 121 FE----YPFIIKPRKSGSSKGVYIIHNENEYKFYLEKDLKEF--QEVLVQEYIKGREITI 174

Query: 180 GVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             +              +PK +FY YE KY++  +        P  I +++  +     Q
Sbjct: 175 SYIQKNEEFILLPILEIIPKKEFYDYEAKYTNGLTELKPQLNSPEKIIQKINEIGNHVMQ 234

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +  + + R D +      +V+ LEIN  PG+T +S  P  A  AG SF EL+  ++++
Sbjct: 235 TLTFKDMFRIDAIL--KDDEVYVLEINTVPGLTELSDLPTSALAAGISFDELINIIIKN 291


>gi|256832903|ref|YP_003161630.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256686434|gb|ACV09327.1| D-alanine/D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 389

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/356 (24%), Positives = 135/356 (37%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           VL GG S E  +S  +      A++   F V  + + +    VLA   PD          
Sbjct: 29  VLFGGRSGEHPISCITAAGVLRAIDRDRFDVVAVGITQGGKWVLASTDPDEVVTSGDDLP 88

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              +   +LHG FGEDG VQ +LEL ++
Sbjct: 89  HVADNGTEVLLPFASGDNEVRVIRDGVLESVGPVDVVLPLLHGPFGEDGTVQGMLELADL 148

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYV 129
            Y   G+L SA+ MDK   K V    G+PV P   V                  +  P  
Sbjct: 149 RYVGVGVLGSAVGMDKHYMKLVFEGHGLPVGPYTTVFPGQWQRDPDEVRARVVALGLPVF 208

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSSLGI  +     +   + ++    H  +++IE  + G E+ C V+G      
Sbjct: 209 VKPTRAGSSLGISKVSDVGDLDRAMAEAL--KHDPKVIIEAGIVGREIECAVLGGHGDTP 266

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
              ++P     +                       PA++       V+ +A  A  A+G 
Sbjct: 267 ARASLPGEITMTGSAHEFYDFEAKYLDDASAQLSCPAELDETTTATVREVAVRAFDAVGG 326

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+SR D         V   EIN  PG TP+S++P M   +G S+ EL+  +++ A
Sbjct: 327 EGLSRVDVFV-QEDGAVVVNEINTMPGFTPISMYPRMWERSGVSYTELISELIDLA 381


>gi|319941789|ref|ZP_08016111.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
 gi|319804722|gb|EFW01589.1| D-alanine-D-alanine ligase [Sutterella wadsworthensis 3_1_45B]
          Length = 319

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 101/309 (32%), Positives = 148/309 (47%), Gaps = 13/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GGISSEREVSL SG+    AL   G +V   D        L     D AF  LHG
Sbjct: 12  VVVLEGGISSEREVSLLSGRGVKEALASKGLEVESWDPAVDSVGGLEEGAYDAAFIALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ +L  + +PYT  G+ ASA++MDK  +K +  + G+ V   + +     D+
Sbjct: 72  TLGEDGSVQGLLNCIGLPYTGPGVTASAIAMDKELTKNIWRANGISVPAGVRLTAAASDA 131

Query: 121 QHLISPP------YVIKPLKGGSSLGIIVIK----KDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +         V+KP   GSS+G+  +        S+   L  ++  +   ++L+E+
Sbjct: 132 ELERAIAEFGADGVVVKPGHDGSSIGVTKLDRDALSLHSLRAALNAAAERDA-AEVLVEE 190

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G E T  ++   +L V EI  P    Y ++ KY +    +  PAK+P    K +   
Sbjct: 191 YIHGREFTVAILDGKALPVIEICAP-EGSYDFQNKYYTDVVRYECPAKLPEASAKALAAA 249

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A   +GCRG SR D   +        LEIN  PGMTP S+ P  A   G S+ +L L
Sbjct: 250 CEKAFAVLGCRGWSRVD-ALERADGTFALLEINTSPGMTPHSLVPMAARAVGLSYADLCL 308

Query: 291 WMVEDASCL 299
            ++  A   
Sbjct: 309 RVLGLARTD 317


>gi|315937019|gb|ADU56028.1| hypothetical protein CA37-5 [uncultured organism CA37]
          Length = 345

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 85/337 (25%), Positives = 141/337 (41%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A +L+   ++   I + +S    L              
Sbjct: 6   VGIIFGGSSEEHPVSVKSAQEVAKSLDSEKYEAFWIGITKSGAWRLCAGPGADWETGSRA 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 ++ DL   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 66  AMLSPDRSVHGLLVLEQGRYQEVRLDLVLPVLHGKTGEDGAMQGLLELSGIPYVGCDVQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  V  S G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAVCMDKSLTYAVAGSAGIATPRFWVVTADEKPDPERLTYPVFVKPARSGSSFGVSKVSH 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +P  +  +       ++LIE+ V G E+ C ++G+    V       +  + +   +
Sbjct: 186 EEELPSAVETAR--QFDSKVLIEEAVAGSEVGCAILGNDGDLVAGEVDRVALSHGFFRIH 243

Query: 207 SS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                     NST + PA I  +    VQ  A   ++A+GCRG+SR D         +  
Sbjct: 244 QESEPERGSENSTFICPADISAESRSLVQETAKAIYRALGCRGLSRVDMFL-KEDGTIVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E+N  PG+T  S +P M A AG     ++  +V  A
Sbjct: 303 NEVNTLPGLTSYSRYPRMMAAAGLPLGAVIDQIVSLA 339


>gi|111225171|ref|YP_715965.1| D-alanyl-alanine synthetase A [Frankia alni ACN14a]
 gi|111152703|emb|CAJ64446.1| D-alanine-D-alanine ligase A [Frankia alni ACN14a]
          Length = 367

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 98/352 (27%), Positives = 156/352 (44%), Gaps = 60/352 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKP------ 51
           A+L GG S+E  +S  S      AL+   + V+ + +D S   V       L P      
Sbjct: 11  ALLFGGRSTEHAISCVSAGGVLRALDPDVYDVALVGIDPSGRWVFMPDAKALTPADGALP 70

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LE+
Sbjct: 71  QVTASRGTSVVLAPDPTAARWYPRDGGESIQGPLGDVDVVFPLLHGPFGEDGTIQGLLEM 130

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIK 131
             +PY  SG+ ASA +MDK   K ++ + G+PV P  +V          Q  +  P  +K
Sbjct: 131 AGVPYVGSGVFASAAAMDKQHMKSMLQAAGLPVGPYAVVRAGQTLSEADQDRLGLPVFVK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +     +   +  +    +  ++L+E  + G E+ CGV+G       +
Sbjct: 191 PARGGSSIGISRVDAWADLDTAVKTAR--ANDPKVLVEAAITGREIECGVLGRLDGPGAQ 248

Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +VP          FY +E KY S  +   +PA++       V+++A  A +A+ C G++
Sbjct: 249 ASVPAEITVTSATGFYDFEAKYVSDQTRFDIPARLSPSALARVRQVAVAAFEALDCAGLA 308

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R D    P    V   E+N  PG TP S+FP M A +G ++ +L+  +V  A
Sbjct: 309 RVDVFVTP-DDHVVVNEVNTMPGFTPTSMFPRMWAASGITYPDLVDRLVRLA 359


>gi|254441192|ref|ZP_05054685.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
 gi|198251270|gb|EDY75585.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Octadecabacter antarcticus 307]
          Length = 277

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 108/276 (39%), Positives = 157/276 (56%), Gaps = 2/276 (0%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             AGF V +ID    +   L  +KPD+ FN LHG + EDG+VQ +LE L IPYTHSG+LA
Sbjct: 2   RTAGFNVVEIDAGVDLVEQLKSVKPDVVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA++MDK ++K++  + G+P   S+L  +  +++ H+++PPYV+KP   GSS+GI ++ +
Sbjct: 62  SAMAMDKQKTKEIYRAHGLPFVSSVLATKTEIEAAHVMTPPYVVKPYDEGSSVGIYLVME 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               P            +     + +    L  G     S  +T   +    +Y Y  KY
Sbjct: 122 GDRPPELAADLPDLMMVEVYAPGRELTTAVLGAGAEYSESRALTVTDIVVDGWYDYAAKY 181

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
               STH +PA +P DI +     A  AH  +GCRG+SR+D+ +D       +  LE N 
Sbjct: 182 EIGGSTHTIPANLPDDISRACMDYAVRAHDVLGCRGLSRTDYRWDESRGLDGLILLETNT 241

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE AA+ G SF +L+ WM+EDASC R
Sbjct: 242 QPGMTPTSLAPEQAAFCGISFPDLMTWMIEDASCNR 277


>gi|296393410|ref|YP_003658294.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
 gi|296180557|gb|ADG97463.1| D-alanine/D-alanine ligase [Segniliparus rotundus DSM 44985]
          Length = 357

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/344 (25%), Positives = 146/344 (42%), Gaps = 53/344 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP----------- 51
           VL GG+S E E+S  S  +  + L+ + +    + + +    VL    P           
Sbjct: 9   VLFGGVSGEHEISCLSAASVLAQLDPSRYTAVPVGITKEGDWVLDRRSPEELGDKAGGLP 68

Query: 52  --------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F VLHG +GEDG VQ + EL  +PY
Sbjct: 69  QVDRTAPRVALAVGRAGAGELRFVGGELAAQVDVVFPVLHGPYGEDGTVQGLFELANLPY 128

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKG 135
              G+ ASA  MDK   K ++   G+PV P  ++              +S P  +KP +G
Sbjct: 129 AGCGVFASAACMDKAHMKALLREGGLPVGPYAVLRPGDDADAAALGERLSLPVFVKPARG 188

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEI 192
           GSSLG++ + + + +P  L  +    +  ++L+E  + G E+ C                
Sbjct: 189 GSSLGVVKVDRWEDLPHALATAR--KYDPKVLVEAGIAGREIECAVLEFPDGRVAAGALG 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +   + Y +E KY +  +   +PAK+   +  E++ LA  A + + C G+SR DF    
Sbjct: 247 EIVVPETYDFETKYLNNTAQLQVPAKLDESVASEIRALAVRAFRVMDCSGLSRVDFFLT- 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +    E+N  PG T  S++P+M   AG  +  LL  +++ A
Sbjct: 306 QDGRPVVNELNTLPGFTTSSLYPKMWERAGLDYPTLLSTLIDTA 349


>gi|119718908|ref|YP_925873.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119539569|gb|ABL84186.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 323

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 104/310 (33%), Positives = 162/310 (52%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL   G +V++ DVD S+   L   +PD    +LHG  
Sbjct: 13  VLAGGLSHERDVSLRSGRRVAEALRATGLEVTERDVDASLLATLRDERPDCVVPMLHGET 72

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ ILELL +PY  +   A  ++ DK  +K VV+  GV    S+ +   T     
Sbjct: 73  GEDGAIREILELLGVPYVGAPPAACRVAFDKPVAKAVVARAGVLTPESVCLPHETFRELG 132

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP + GS+LG  V++  + +P  +   S++ +GD  L+E++V
Sbjct: 133 AGAVMAALVDRLGLPLMVKPTRSGSALGCTVVRTAEQLPAAM--VSAFAYGDVALLERFV 190

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+   V+ D S           P    Y Y  +Y++  +  V PA +  ++  EV R
Sbjct: 191 PGMEVAVPVVDDGSGARALPAVAIQPDGGVYDYTARYTAGATEFVTPAPLSEELAAEVAR 250

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A LAH+ +G R +SRSD + D    +V++LE+NV PG T  S  P     AG    ++ 
Sbjct: 251 VALLAHEVLGLRDVSRSDLIID-HEGRVWFLEVNVAPGFTETSTVPLAIQAAGLDLGKVC 309

Query: 290 LWMVEDASCL 299
             MV+ A+  
Sbjct: 310 ASMVQAAAAR 319


>gi|257877137|ref|ZP_05656790.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
 gi|257811303|gb|EEV40123.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC20]
          Length = 362

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 40/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +    +       A   PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEISPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +  + +   L ++  ++    +        IE+      D    +    V    FY 
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335


>gi|257867059|ref|ZP_05646712.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257873394|ref|ZP_05653047.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
 gi|257801115|gb|EEV30045.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC30]
 gi|257807558|gb|EEV36380.1| D-alanine:D-alanine ligase [Enterococcus casseliflavus EC10]
          Length = 358

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 81/334 (24%), Positives = 141/334 (42%), Gaps = 40/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPD-- 52
           + +L GG S+E EVSL S  +  +A+    ++V  + + +    +       A   PD  
Sbjct: 3   IILLYGGRSAEHEVSLLSAFSVVNAVYYNYYQVQLVMITKEGRWLKGPLLTEAPTSPDTL 62

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  ALTNEETKGEEITPGAIYEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +  + +   L ++  ++    +        IE+      D    +    V    FY 
Sbjct: 183 SKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 243 YNSKYIDNRIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335


>gi|238918680|ref|YP_002932194.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
 gi|238868248|gb|ACR67959.1| D-alanine--D-alanine ligase B [Edwardsiella ictaluri 93-146]
          Length = 300

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/305 (32%), Positives = 157/305 (51%), Gaps = 19/305 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL SG+A  + L+ AG      D  R     L     +  F  L+G
Sbjct: 5   VAVLLGGTSAERDVSLLSGQAVLNGLKQAGIDAYPADTRRFPATQLREAGFERVFIALYG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------- 113
                  +Q +LE L++PYT S ++ASAL+MDK+RSKQV  + G+PV P + +       
Sbjct: 65  RGS----LQGVLEFLQLPYTGSDVMASALTMDKLRSKQVWQAAGLPVVPYVAISREQFDE 120

Query: 114 --NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                T+   + +  P ++KP + GSS+G+  + +       L    +  H D++LIE++
Sbjct: 121 GLTMDTLHEINDLGLPLIVKPSREGSSVGMSKVSEPCEFDPAL--VEALRHDDEILIEKW 178

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T   +GD       I +  +  Y YE+KY S  + +  P+ +  +  + +  L 
Sbjct: 179 LSGPEYTVAFIGDEIFPSIRIQMADAF-YDYEVKYLSDKAEYFCPSGLSDEQEQALVALV 237

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A++A+GC G  R D + D  S +   LE N  PG    S+ P  A  AG SF  L++ 
Sbjct: 238 RRAYKALGCSGWGRVDVIQDT-SGEFCLLEANTAPG--SHSLTPMAACQAGMSFSPLVVR 294

Query: 292 MVEDA 296
           ++E A
Sbjct: 295 ILELA 299


>gi|182435714|ref|YP_001823433.1| D-alanyl-alanine synthetase A [Streptomyces griseus subsp. griseus
           NBRC 13350]
 gi|326776339|ref|ZP_08235604.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
 gi|229486019|sp|B1VYZ5|DDL_STRGG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|178464230|dbj|BAG18750.1| putative D-alanine-D-alanine ligase [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|326656672|gb|EGE41518.1| D-alanine--D-alanine ligase [Streptomyces cf. griseus XylebKG-1]
          Length = 391

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/362 (25%), Positives = 149/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   A++   + V  I +       L   +P         
Sbjct: 25  VAVVFGGRSSEHGISVVTAGAVMRAIDRTTYDVLPIGITTDGRWALTADEPERMAITDRK 84

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 85  VPDVDRLTESAEGSVVLSVDPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 144

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----------- 119
           +LEL  +PY  +G+LASA+  DK   K+V  S G+PV P  +V     D           
Sbjct: 145 LLELSGVPYVGAGVLASAVGQDKEYMKRVFLSFGLPVGPYEVVRPREWDNDPAAARERIV 204

Query: 120 -SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  IKP +GGSS+GI  +   + +   + ++    H  + L+E  + G E+ 
Sbjct: 205 DFAGEHGWPLFIKPARGGSSMGITKVDSVEGLDAAIEEAR--RHDPKFLVESLLRGREIE 262

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  ++PA +  +   EV+RLA  A
Sbjct: 263 CGVLEFEDGPRASVPAEIPPVTSHDFYDFEAKYIDSAAGLVPAPLTEEQTAEVRRLAVAA 322

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G+ R+DF            EIN  PG TP+S++P M   +G  + EL+  +++
Sbjct: 323 FDAVSCEGLVRADFFLTE-DGTFVINEINTLPGFTPISMYPRMWQESGVDYPELVDRLIQ 381

Query: 295 DA 296
            A
Sbjct: 382 AA 383


>gi|229816214|ref|ZP_04446524.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
 gi|229808222|gb|EEP44014.1| hypothetical protein COLINT_03264 [Collinsella intestinalis DSM
           13280]
          Length = 325

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 120/307 (39%), Positives = 171/307 (55%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GGIS ERE+SL+SGK  A+AL +AG+  V  +D  +R     L +   D+AF  L
Sbjct: 17  VAVLAGGISDEREISLASGKNAAAALTEAGYGTVEMVDPGERGFLSRLENGNYDVAFIAL 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG+ Q ILE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  M
Sbjct: 77  HGFGGEDGMTQHILEFLGIPYTGSNSLASGIAMDKDLSKLLYRRAGLPVAPSVTFTRADM 136

Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            S   I         +KP+  GSS GI ++K    +   +  +    HGD++++E  V G
Sbjct: 137 PSIDEIVEIVGPQSFVKPVVNGSSYGISLVKDPSELTAAIELAF--EHGDKVMVEHRVFG 194

Query: 175 IELTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +E +   +GD            +   +S+FY  E+KY+  N  H +PA++P D+Y +VQ 
Sbjct: 195 VECSVAALGDGETLRALPVVEIMMPQQSEFYDLEVKYADPNDIHRIPAQLPEDVYAQVQD 254

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH+A+G  GISR+D +          LE N  PGMT  S+ P+ A +AG +F +L 
Sbjct: 255 IACRAHEALGLFGISRTDVIVTEDG--PIILETNNIPGMTSESLVPDEARHAGIAFSDLC 312

Query: 290 LWMVEDA 296
             +VE A
Sbjct: 313 AELVELA 319


>gi|307702298|ref|ZP_07639256.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|307624101|gb|EFO03080.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 347

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +      +  ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 335


>gi|293365895|ref|ZP_06612598.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
 gi|291315573|gb|EFE56023.1| D-alanine--D-alanine ligase [Streptococcus oralis ATCC 35037]
          Length = 372

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 161/334 (48%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 30  IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 89

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ +     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 90  MTNDTIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 149

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +      +  ++ P   KP   GSS+GI   
Sbjct: 150 MDKITTKRVLESAGIAQVPYVAIVEGDDVTSKIAEVEEKLTYPVFTKPSNMGSSVGISKS 209

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 210 ENQEELRQALELAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 267

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A +A +AIG  G+SR DF +     ++F  E+
Sbjct: 268 DAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 326

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 327 NTMPGFTQWSMYPLLWDNMGISYPELIEHLVDLA 360


>gi|329769753|ref|ZP_08261154.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
 gi|328838115|gb|EGF87733.1| hypothetical protein HMPREF0433_00918 [Gemella sanguinis M325]
          Length = 355

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/339 (25%), Positives = 152/339 (44%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----VLAHL------- 49
           + ++ GG S+E  +SL + K+  +A++   + V  I +           +          
Sbjct: 6   IGIVYGGKSAEHSISLLTAKSIINAIDKEKYNVFPIFISLEGNWAKGEQIKSEIKDQNEL 65

Query: 50  ------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                             K DL F VLHG  GEDG +Q  LE+++I Y  + +L+SA  M
Sbjct: 66  RFTNFNSDISSLLFEDGRKFDLVFPVLHGPNGEDGTIQGFLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P      +T               +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYTHFIEYTWKKNKEAVIKEVNDNLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   + ++       +++IEQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGIEEAL--KFDKRIVIEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISTT 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I  ++Y E +++A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDPNLYPEFRKMAATAFRAISGSGLVRADFFYTKE-GEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    S+ E++  +   A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYPEVIEELFRLA 341


>gi|146300373|ref|YP_001194964.1| D-alanyl-alanine synthetase A [Flavobacterium johnsoniae UW101]
 gi|190359130|sp|A5FGN3|DDL_FLAJ1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146154791|gb|ABQ05645.1| D-alanine--D-alanine ligase [Flavobacterium johnsoniae UW101]
          Length = 323

 Score =  160 bits (405), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 153/323 (47%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG      L+   +   +I +                    D 
Sbjct: 4   IAIIMGGYSSEYKISLISGNVVYQYLDKTKYNGFRIHIFKEKWVYVDANDAEFPIDRNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG  GEDGL+QA  EL+ +P +      SAL+ +K     V+
Sbjct: 64  SVTVNGEKITFDCVFNAIHGTPGEDGLMQAYFELIGLPQSSCDYYQSALTFNKRDLLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N+    +   I      P  +KP K GSS GI  +K +  +P+ +  
Sbjct: 124 KPYGIKTAISYYLNKGDEINTAEIVKKVGLPCFVKPNKAGSSFGISKVKSEAELPIAIEV 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +      ++++IE ++DG E++ GV+              V  +DF+ YE K     S  
Sbjct: 184 AY--KEDNEIIIESFLDGTEVSVGVINYKGEIKVLPITEIVSDNDFFDYEAK-YEGKSQE 240

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ ++V   A  A++ +  +G SRS+F+   +  + + LE+N  PG+T  S+
Sbjct: 241 ITPARISDELTQKVGETAKRAYEVLKMKGFSRSEFII--VDNEPYMLEMNTIPGLTTESL 298

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S  +L    +E +
Sbjct: 299 IPQQAKAAGISLEDLFTNAIELS 321


>gi|331092269|ref|ZP_08341097.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330401701|gb|EGG81280.1| hypothetical protein HMPREF9477_01740 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 350

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 99/345 (28%), Positives = 158/345 (45%), Gaps = 55/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S+ER+VSLSSG      L++ G  V  +D                       
Sbjct: 3   IIVLAGGLSTERDVSLSSGAGICRTLKERGHDVFLLDAFMGLEYDSDKLEEVFTLENSGL 62

Query: 38  -------VDRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG+ GE+G +QA  
Sbjct: 63  EIAEGIKTTEPDLEAVKASRPDQSPSLLGPNVIELCRMADIVFMGLHGDIGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYV 129
           ++L I YT    L SAL+MDK  +KQ+    GVP          ++ T  ++  +S P V
Sbjct: 123 DILGIKYTGPNSLGSALAMDKGVTKQIFKMSGVPTPAGTWLKKADKDTTLNELGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ + + +      + +S    + D+++IE Y+ G E   G++   +L V
Sbjct: 183 VKPCSGGSSIGVYIPQTEAEYKTAVEESF--KYEDEIIIEPYIKGREFAVGIIDGKALPV 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PKS+F+ Y  KY +  +  + PA I   I K +Q     A  A+     SR+DFL
Sbjct: 241 I-EIIPKSNFFDYTNKYQAGCTEEICPAHIDDAIAKRMQEATEKAFAALKLDVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                 +++ LE+N  PGMT  S+ P+ A  AG S+ +L   +++
Sbjct: 300 LTE-DGEIYCLEVNSLPGMTSASLLPKEAQAAGISYGDLCELIIQ 343


>gi|86144058|ref|ZP_01062396.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
 gi|85829518|gb|EAQ47982.1| D-alanylalanine synthetase [Leeuwenhoekiella blandensis MED217]
          Length = 330

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 155/327 (47%), Gaps = 32/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG SSE  +S+ SG      L+ + + V  I +                    D 
Sbjct: 6   IAVVMGGFSSEVNISILSGNTVCKHLDQSKYNVFPIHILKEGWFCKHADHKPIPVDKADF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDG++QA L+LL IP T      +AL+ +K     V+
Sbjct: 66  SINVEGTKITFDCVFNTIHGTPGEDGILQAYLKLLNIPQTACNYYEAALTFNKRDCIGVL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+    + L+N+        I      P  +K  K GSS G+  +   + +   +  
Sbjct: 126 KAYGIKTATNYLLNKGDAIHATEILEQVGLPCFVKANKAGSSYGVSKVYGAEELEGAIEV 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTH 213
           +      D+++IE +++G E++ GV+      +       V  +DF+ Y+ K     S  
Sbjct: 186 AF--KEDDEIIIESFLEGTEVSVGVINYQGNVMALPVTEIVSDNDFFDYQAK-YEGKSQE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  + VQR A    + +  +G++R++F+F   + +  +LE+N  PG++P SI
Sbjct: 243 ITPARITDEQTEAVQREAEKVFKILKLKGLTRAEFIF--HNGEPHFLEVNTTPGLSPASI 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+ A  AG S  EL   ++E A   R
Sbjct: 301 IPQQAKVAGISLPELFDNVIEQAMRDR 327


>gi|154500220|ref|ZP_02038258.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
 gi|150270952|gb|EDM98226.1| hypothetical protein BACCAP_03884 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 102/348 (29%), Positives = 155/348 (44%), Gaps = 52/348 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------VDRSV 42
           + VL GG+S ER VSLS+G   A AL   G +V+ +D                       
Sbjct: 3   IVVLAGGLSPERNVSLSTGTMVAEALTSLGHEVALVDMYFGVKEKGAELSGLFGAPISEE 62

Query: 43  GLVLAHLKPDL----------------------------AFNVLHGNFGEDGLVQAILEL 74
              ++   PDL                             F  LHG+ GEDG VQA  +L
Sbjct: 63  HKRVSRQAPDLAAVKASRTEGGDSMFGPGVLELCGMADLVFLALHGSCGEDGRVQAAFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKP 132
           + IPYT SG L SA++MDK  +K++V+          +                P V+KP
Sbjct: 123 MGIPYTGSGYLGSAIAMDKDLTKRMVADVVSTPGWKTVSYTADDIDGLVETARLPLVVKP 182

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           +  GSS+G+ +    + +   L +      G + ++EQYV G EL   ++ D +L     
Sbjct: 183 VASGSSIGVSIAHTAEELRTALTEGL--ALGGRTVLEQYVKGRELQVAILEDKALPSI-E 239

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +PK  FY YE KY    +  V PA I  +  ++++  A   ++ +G    SR+DF+ D 
Sbjct: 240 IIPKQGFYDYENKYQPGAAEEVCPADISPEAEQKLRDAAVRVYETLGLAVYSRADFILDA 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V+ +   R
Sbjct: 300 -DGEPWFLEINTLPGMTPTSLVPQEAAAVGIDYNTLCQRIVDASLAAR 346


>gi|6634594|emb|CAB64487.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 157/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYNRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVVPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 335


>gi|161779891|gb|ABX79437.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 88/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++                 L
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           +AL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 TALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|312140476|ref|YP_004007812.1| d-alanine-d-alanine ligase [Rhodococcus equi 103S]
 gi|311889815|emb|CBH49132.1| D-alanine-D-alanine ligase [Rhodococcus equi 103S]
          Length = 368

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  MPTVDAGGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  IPY   G+LASA  MDK  +K+++++ G+PV   +++   T     + +  +  P  
Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+GI  +         +  +   +H  ++++E  + G E+ CGV+     DV
Sbjct: 188 VKPARGGSSIGITRVADWSQFDAAVAVAR--SHDPKVIVESAIVGREVECGVLEFPDGDV 245

Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               V +             Y ++ KY        +PAK+  D+ ++++ LA  A +A+ 
Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M   AG  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363


>gi|325675906|ref|ZP_08155590.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
 gi|325553877|gb|EGD23555.1| D-alanine-D-alanine ligase [Rhodococcus equi ATCC 33707]
          Length = 368

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 94/360 (26%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVVFGGRSNEHSVSCVSAGSVLRNLDPDRYEVVPIGITTDGAWVLGSTDPADLAIRDRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  MPTVDADGKALTLTADPTRAGAVVALDDKQAGQALASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  IPY   G+LASA  MDK  +K+++++ G+PV   +++   T     + +  +  P  
Sbjct: 128 LAGIPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGFQVVLRPGTSTVTDEQKQQLGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+GI  +         +  +   +H  ++++E  + G E+ CGV+     DV
Sbjct: 188 VKPARGGSSIGITRVADWSQFDAAVAVAR--SHDPKVIVESAIVGREVECGVLEFPDGDV 245

Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               V +             Y ++ KY        +PAK+  D+ ++++ LA  A +A+ 
Sbjct: 246 RASVVAEIRMPDTDGDESAFYDFDTKYLDDVCEFDVPAKLDDDVSEQIRALAVRAFRALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M   AG  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTADG--PVINEINTMPGFTSISMYPRMWQAAGVEYETLVSTLVDTAVAR 363


>gi|213970839|ref|ZP_03398962.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
 gi|301384525|ref|ZP_07232943.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           Max13]
 gi|302060687|ref|ZP_07252228.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato K40]
 gi|302130483|ref|ZP_07256473.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|213924362|gb|EEB57934.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. tomato T1]
          Length = 363

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 92/346 (26%), Positives = 162/346 (46%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE EVSL S +   +A++   + ++ I VD+    +               
Sbjct: 5   VAIVFGGQSSEHEVSLQSARNVINAIDRESYALTLIGVDKLGRWLRFDEADYLLNANDPA 64

Query: 46  ------------------------LAHLKP----DLAFNVLHGNFGEDGLVQAILELLEI 77
                                   +   KP    D+ F ++HG FGEDG +Q +L +L +
Sbjct: 65  RIKLSGSGKQLSLLPGSVGGQFVEVESGKPLAAIDVVFPLIHGAFGEDGALQGLLRMLAV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPL 133
           P+  + +LASA  MDK  +K+++   G+ V P +++NR        +   +S P  +KP 
Sbjct: 125 PFVGADVLASAACMDKDVTKRLLRDAGIAVAPFMVLNRGESLSFAQAAAQLSLPMFVKPA 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G  V K           +  +    +LLIEQ + G E+ C V+G+    V+   
Sbjct: 185 NQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLIEQGIVGREVECAVLGNDEPQVSVCG 242

Query: 194 VPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              ++   Y           +   +PA++P D+  +V+ +A  A++ +GC G+SR DF  
Sbjct: 243 EVVANDEFYAYDTKYLNGDQARIAIPAELPADLSDQVRDVALQAYKVLGCAGLSRVDFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               R++   E+N  PG T +S++P++   +G S+ EL+  ++  A
Sbjct: 303 TGA-REIIINEVNTLPGFTSISMYPKLWQASGLSYAELIHRLIVLA 347


>gi|256027423|ref|ZP_05441257.1| D-alanine--D-alanine ligase [Fusobacterium sp. D11]
 gi|289765386|ref|ZP_06524764.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
 gi|289716941|gb|EFD80953.1| D-alanine-D-alanine ligase [Fusobacterium sp. D11]
          Length = 287

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 162/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I V +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKVPKAYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEKIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKRLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|161779889|gb|ABX79436.1| VanC1 [Enterococcus gallinarum]
 gi|161779895|gb|ABX79439.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++                 L
Sbjct: 4   IAVLFGGNSPEYSVSLASAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|284042877|ref|YP_003393217.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283947098|gb|ADB49842.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 346

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/339 (25%), Positives = 135/339 (39%), Gaps = 45/339 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            V+ GG S E  +S+ S +  A  L+ A ++   I +  S    L               
Sbjct: 7   GVIFGGCSEEHPISVKSAQEVARHLDPARYEPFYIGITTSGAWKLCDGPDADWENGRCRP 66

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D+   VLHG  GEDG +Q +LEL  IPY    + +
Sbjct: 67  ATLSPDRSARGLLVLEYGRYETISLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVQS 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  + G+       V          +  P  +KP + GSS G+  +  
Sbjct: 127 SALCMDKSLTYTVARAAGIATPRFWTVTANEHVDPDQLPYPVFVKPARSGSSFGVSKVSG 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +P  L  +    +  ++L+E+ V G E+ C ++G+    +       +  + +   +
Sbjct: 187 RDELPGALDVAR--RYDSKVLVEEAVVGSEIGCAILGNGLDLLAGEVDQIALSHGFFRIH 244

Query: 207 SSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                          +PA I  +    VQ  A  A++A+GCRG+SR D         V  
Sbjct: 245 QEDEPERGSDNSSVTVPAAISQEARALVQETAKAAYRALGCRGLSRVDMFLTA-DGDVVL 303

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            E+N  PGMT  S +P M A AG  F E++  +V  A  
Sbjct: 304 NEVNTLPGMTSYSRYPRMMAAAGLPFAEVIDRIVALALT 342


>gi|149021235|ref|ZP_01835481.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
 gi|147930336|gb|EDK81320.1| D-alanylalanine synthetase [Streptococcus pneumoniae SP23-BS72]
          Length = 347

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         +  P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLVYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|258405198|ref|YP_003197940.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
 gi|257797425|gb|ACV68362.1| D-alanine/D-alanine ligase [Desulfohalobium retbaense DSM 5692]
          Length = 302

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 97/296 (32%), Positives = 153/296 (51%), Gaps = 7/296 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNVLHGN 61
           ++ GG S+ER+VS+S GKA A+AL   G +V   D  +    +    +  D  F  LHG 
Sbjct: 5   LIAGGWSNERDVSISGGKAIAAALRANGHEVHWFDPAQEFAELPTKARQSDFVFINLHGA 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-LVNRFTMDS 120
            GEDGL+QA+L+ L  PY  SG   S L++DK  +K + +  G+       + +    + 
Sbjct: 65  PGEDGLIQAMLDRLGCPYQGSGPAGSLLALDKTATKTLYAQAGLATPAWELVTSCREENW 124

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  IKP +GGSSLG+  +   + +   L  S        +L+E+ V G E+TC 
Sbjct: 125 QPALRFPLFIKPNQGGSSLGVQRVYSQKELHPQL--SQQLQFSSAVLLEEAVTGKEVTCA 182

Query: 181 VMGDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           V+G+ +L +       ++ F+ Y  KY+   +  + PA +   +   +Q+ A  AH+ +G
Sbjct: 183 VVGEQALPLVLIEPGDEAAFFDYHSKYTPEAAREICPAPLSETLTAAIQKAALEAHRILG 242

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             G SR+DF+    +   F LE N  PGMTP S+ P+ AA  G  F  LL  +++ 
Sbjct: 243 LTGYSRTDFIL--ANGTAFALETNTLPGMTPTSLLPQAAAARGQDFNGLLEELIQL 296


>gi|257870941|ref|ZP_05650594.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
 gi|24711813|gb|AAN62561.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632241|gb|AAX89143.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|62632243|gb|AAX89144.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
 gi|257805105|gb|EEV33927.1| D-alanine:D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 351

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/334 (23%), Positives = 139/334 (41%), Gaps = 40/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL S  +  +A+    ++V  + + R    +               
Sbjct: 3   IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62

Query: 46  ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                              +  + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  IKP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +  + +   L ++  ++    +        IE+      D    +    V    FY 
Sbjct: 183 TKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 243 YNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 LNTMPGFTEFSMYPLLWEKTGLPYGDLIEELIQL 335


>gi|237743964|ref|ZP_04574445.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
 gi|229432995|gb|EEO43207.1| D-alanine-D-alanine ligase [Fusobacterium sp. 7_1]
          Length = 287

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 103/296 (34%), Positives = 162/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I V +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIRVPKAYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|319893032|ref|YP_004149907.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317162728|gb|ADV06271.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323463913|gb|ADX76066.1| D-alanine--D-alanine ligase [Staphylococcus pseudintermedius ED99]
          Length = 356

 Score =  160 bits (404), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 46/341 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49
            ++ GG S+E +VS+ + +   +A++ A + +  I +                       
Sbjct: 7   CIIYGGKSAEHDVSILTAQNVLNAIDKARYHIDIIYITNDGQWKKMDNITEDITDVEALR 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++ 
Sbjct: 67  IDDVPTSDISAMLTQSSQGGRYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAASS 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGSSLG 140
           SMDK+  KQ+ +  G+P  P +   R   +             ++ P  +KP   GSS+G
Sbjct: 127 SMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYRKNIIKLVHDKLAFPVFVKPANLGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198
           I   + + ++   + ++       +L+IEQ VD  E+   V+G+   + T     V    
Sbjct: 187 ISKCEDEAALIKGIEEAF--QFDRKLVIEQGVDAREIEVAVLGNDYPETTWPGEVVKDVA 244

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY        +PA +  D+   ++ +A  A +A  C G+ R+DF       +++
Sbjct: 245 FYDYKSKYKDGKVKLAIPADLDQDVQMTLRNMAVEAFKATDCSGLLRADFFVTA-DNQIY 303

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             E N  PG T  S++P++    G S+ EL+  +++ A   
Sbjct: 304 INETNAMPGFTAYSMYPKLWENMGVSYSELITKLIDLAKAR 344


>gi|224477067|ref|YP_002634673.1| D-alanyl-alanine synthetase A [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|254767738|sp|B9DMH1|DDL_STACT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222421674|emb|CAL28488.1| putative D-alanine-D-alanine ligase A [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 356

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 142/340 (41%), Gaps = 48/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL------- 53
           + ++ GG S+E +VS+ + +   +A+    ++V  I +           K D+       
Sbjct: 6   ICIIYGGKSAEHDVSILTAQNVLNAINKDDYQVDIIYITNDGAW---KKKDDITENVEDV 62

Query: 54  ----------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                        F +LHG  GEDG +Q + E+L++PY  +G+L
Sbjct: 63  DSLRLEEVEEGEISNLLTNSSSGQPYAAVFPLLHGPNGEDGTIQGLFEVLDLPYVGNGVL 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGG 136
           A++ +MDK+  KQ+ +  G+P  P +   R   +          +  +  P  +KP   G
Sbjct: 123 AASSTMDKLVMKQLFAHRGLPQLPYVSFLRSEYEKYQSNILKLVKDKLEFPVFVKPANLG 182

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI     ++ +   + ++  ++    +        IE+                V  
Sbjct: 183 SSVGISKCNNEEELKSGIEEAFQFDRKLVIEQGIEAREIEVAVLGNDYPETTQPGEVVKD 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             FY Y+ KY        +PA++  ++   ++ +A  A +A  C G+ R+DF       +
Sbjct: 243 VAFYDYKSKYLDGKVQLSIPAELDSEVQTTLRNMAAEAFKATDCSGLLRADFFVTE-DNQ 301

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E N  PG T  S++P +    G S+ +L+  ++E A
Sbjct: 302 IFINETNAMPGFTQYSMYPSLWENMGLSYADLITKLIELA 341


>gi|145593823|ref|YP_001158120.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145303160|gb|ABP53742.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 368

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 159/355 (44%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S  S  +  +AL+   ++V  + + R+   VL    P         
Sbjct: 9   VAVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGSDPAELAISARR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTAESGAAIMLNADPSHSGLMVLDATAGPRALADVDVVFPVLHGAYGEDGSIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ ++ G+P+ P +++          +  +  P  +
Sbjct: 129 MAGIPYVGANVFASAAAMDKEFTKKLCAAEGIPIGPYVVLRSGMTLTEQDKQRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MG 183
           KP + GSS GI  I     +   +  +       ++L+E  V G E+ CGV       + 
Sbjct: 189 KPSRAGSSFGITKISDWAELDAAVATARQI--DSKVLVEAAVVGREIECGVLEGEAGGVP 246

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +AS+      V + DFY +E KY        + +PA +   + ++VQ  A  A  A+ C 
Sbjct: 247 EASVLAEVRVVGEYDFYDFEAKYIDAESACEYDIPAGLSERVTRQVQEYAVRAFTALDCA 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R+DF   P    ++  EIN  PG TP S+FP M A +G  + +L+  ++  A
Sbjct: 307 GLARADFFVTPELD-IYLNEINTMPGFTPSSMFPRMWAASGLEYPKLVNRLIRTA 360


>gi|158521437|ref|YP_001529307.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158510263|gb|ABW67230.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 313

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 105/312 (33%), Positives = 166/312 (53%), Gaps = 16/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A++ GG+SSER+VSL+ GK   +AL+ A ++V + D    +  ++      D AF  LH
Sbjct: 6   VALICGGVSSERDVSLAGGKMIQAALDPARYRVLRYDSRTDLARLVQEAPGIDTAFVNLH 65

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q +L+LL +PY  SG+L SAL+M+K+ +K+V    G+PV P  +V+     
Sbjct: 66  GVHGEDGTIQGLLDLLGVPYQCSGVLGSALAMNKLAAKRVYQQAGLPVPPYRVVSENRDA 125

Query: 120 -------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGSS+G+ ++K+   +   + ++    HG  +L+E Y+
Sbjct: 126 DGSFLDAHADALGFPLVVKPACGGSSIGMSIVKQVSELAPAVDKAL--AHGPDVLLEAYI 183

Query: 173 DGIELT--CGVMGDASLDVTEIAVPK--SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G ELT       D         +P     F+ YE KY+   ++ + PA +P D+   V+
Sbjct: 184 QGRELTGGVIGNDDPEPLPVVEIIPGDGYGFFDYEAKYTPGATSEICPAPVPEDLSARVR 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH A+ C+G SR+D +       +F LE N  PGM P S+ P  A  AG +F +L
Sbjct: 244 DYACRAHSALFCKGYSRTDMIATDTD--LFVLETNTIPGMGPTSLLPLAAKAAGMAFGDL 301

Query: 289 LLWMVEDASCLR 300
           L  ++  +   R
Sbjct: 302 LDRLISLSLEKR 313


>gi|260584699|ref|ZP_05852445.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
 gi|260157722|gb|EEW92792.1| D-alanine--D-alanine ligase [Granulicatella elegans ATCC 700633]
          Length = 359

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/347 (22%), Positives = 148/347 (42%), Gaps = 53/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + V+ GG S+E ++S+ +  +    +    ++V  + ++R    +               
Sbjct: 5   IIVVYGGKSAEHDISILTAFSIIKEIYFDYYEVQPVYINRKGEWLKGEPLTGPVAFSEAL 64

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      L   +  + F VLHG  GEDG +Q + E++++P
Sbjct: 65  RLEVSQEAHFATSEGEVSTGVLVTPYDLKEEEC-VVFPVLHGPNGEDGTIQGLFEMMDVP 123

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129
           Y   G+LASA  MDK+ SKQ+    G+P  P +  N+                 +  P  
Sbjct: 124 YVGCGVLASACGMDKITSKQLFQQAGLPQLPYVPFNKTQWKQNPESIFNKIEGTLIYPVF 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI   +  + +   ++++  ++    +        IE       +A+  V
Sbjct: 184 VKPANMGSSVGISKAENREELTTAIVEALKYDRRIVVEQGIEAREIECAVLGNDEANTSV 243

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               V  S FY Y  KY +   T  +PA+I  ++  +V+  +  A +AI   G++R DF 
Sbjct: 244 VGEIVKTSGFYDYNEKYINNTVTLEIPAQISDEVSAKVREYSAKAFRAIDGSGLTRCDFF 303

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +  ++  E+N  PG T  S++P +    G S+++L+  +++ A
Sbjct: 304 LTE-TNDIYINEVNTLPGFTQFSMYPLLWEKTGISYKDLVEELIQLA 349


>gi|254967038|gb|ACT97555.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 366

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 158/349 (45%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG+SSE EVS  S       L+   +++  I + +    +               
Sbjct: 11  VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKDGRWLYTEATSAQMADGSWE 70

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  ++ D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 71  ELPGNMPCVVSPDRADHGLILFTPAGQVEKVRADVVIPVLHGLWGEDGTVQGLLELAGIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+ ++             +  P  
Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIECDPEGVCDGVIAKLGWPIF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 191 VKPANAGSSVGITKAHDRTELKEAIRLAL--ANDRKVVFEAFVDGHEVECAVIGSDPAVS 248

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PAK+P +   EV+  A +A+ A+GC G++R D
Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPAKLPEEKLDEVKTYAAMAYTALGCEGLARCD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++  A
Sbjct: 309 FFVEKNTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357


>gi|296138260|ref|YP_003645503.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296026394|gb|ADG77164.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 344

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 87/334 (26%), Positives = 142/334 (42%), Gaps = 44/334 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + VL GG S E  VS+ S +  A  L+   ++   I + R     L              
Sbjct: 6   IGVLFGGASEEHPVSVKSAREVARNLDPDRYEAHWIGITRDGAWRLCAGPENDWESGSVP 65

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 ++ D+   VLHG FGEDG VQ + EL  + Y    + +
Sbjct: 66  AMLSPDRGDHGLLVREAGRYRVVELDVILPVLHGRFGEDGAVQGLCELSGVDYIGCDVPS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA+ MDK  +  + S+ G+      +V          ++ P  +KP + GSS G+  +  
Sbjct: 126 SAICMDKSLAYVISSAAGIATPEFRIVAGHEAPDPAELAYPVFVKPARSGSSFGVSKVTA 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +P  +  +    +  ++LIE+ V G E+ C V+GD            +  + +   +
Sbjct: 186 PDDLPAAIEAAR--EYDSKVLIERAVAGSEVGCAVLGDGRGLTVGEVDHIALSHGFFRIH 243

Query: 207 SSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                     NST ++PA IP +    VQ+ A   ++A+GC G++R D    P   +V  
Sbjct: 244 QEDSPETGSENSTPIVPADIPAESRARVQQTARAIYRALGCSGLARVDMFLTP-GGEVVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            E+N  PG+T  S +P M + AG S  E+L  +V
Sbjct: 303 NEVNTLPGLTSYSRYPRMMSAAGISLAEVLDRLV 336


>gi|260495138|ref|ZP_05815266.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
 gi|260197195|gb|EEW94714.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_33]
          Length = 287

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 162/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+        + DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVVLDERNQVTAFLDNEYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I V +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIRVPKAYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGVFLCNNREEAEEAVKKLA------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYADGGSIHEFPAKIEDKSYKEAMKIAEKVHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFIL--SDGELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|309388982|gb|ADO76862.1| D-alanine/D-alanine ligase [Halanaerobium praevalens DSM 2228]
          Length = 350

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 90/338 (26%), Positives = 148/338 (43%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+  GG S+E E+SL S ++  +A +   + +  + +D+    +               
Sbjct: 8   IALFFGGRSAEHEISLLSARSIYTAFDKKKYDIFPVAIDKKGFFINLEKSKKILLSDKKQ 67

Query: 46  ----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              LK DL F VLHG FGEDG +Q  LE L+I Y    + +SA+
Sbjct: 68  VPASANKSILTKELLEFLELKVDLVFPVLHGPFGEDGKIQGFLETLDINYIGCDLSSSAV 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRF----------TMDSQHLISPPYVIKPLKGGSSL 139
            MDK   KQ+ +   +P     + N+                     P+ +KP   GSS+
Sbjct: 128 GMDKAFMKQIFAYNNIPQAEFEIFNKSDLEKKSKKEVFASFSAKFGIPFFVKPANMGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPK 196
           GI  +K  +S    L +     +  +L+IE+ +   EL   V+   +          + +
Sbjct: 188 GINQVKDFKSFVKALAEGF--KYDLKLIIEENIAARELESAVLATNTGIKVSTAGEIISE 245

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +DFY Y+ KY    +  ++PA +      +++ ++  A QAIG  G+SR DF  D     
Sbjct: 246 NDFYDYQAKYEDQKTKLIIPAPVSPTTAAKIKEISINAFQAIGALGLSRLDFFVDEEKEV 305

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +   EIN  PG T  S++P +    G SF E+L  +V+
Sbjct: 306 ILVNEINTMPGFTKFSMYPLLFKDMGISFSEILDSLVK 343


>gi|309813274|ref|ZP_07706990.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
 gi|308432770|gb|EFP56686.1| D-ala D-ala ligase N-terminal domain protein [Dermacoccus sp.
           Ellin185]
          Length = 373

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 85/359 (23%), Positives = 147/359 (40%), Gaps = 66/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S ++     +A++   + V  I + ++   VL    P         
Sbjct: 10  VAVVFGGRSSEHAISCATAAGVLAAIDRERYDVVPIGISKAGQWVLMPDDPSVLAIQGKK 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q +LE
Sbjct: 70  LPEVTNDAGREVVIAPSPDQHDILVLDAGQTPQALTSVDVVLPLLHGPFGEDGTLQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           L ++ Y  SG+ ASA+ MDK   K V  + G+PV P +++                  + 
Sbjct: 130 LADLRYVGSGVTASAVMMDKHMMKIVFEAAGLPVGPYVVITDKQWRRDKDAAMASLTPLR 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS+GI  +     +   +  +       +++IE  + G E+ CGV+   
Sbjct: 190 YPVFVKPARAGSSVGISKVDSRDQLEAAIELAR--ESDPKVVIEAGIVGREVECGVLEGH 247

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQA 237
             D+   +         E  +    + +          PA +  +    ++ L+  A  A
Sbjct: 248 GSDLPRASELGEIEEIGEHAFYDFEAKYLNDDGLRLACPADVSAEDTARIKELSIKAFDA 307

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            GC G++R D+ +      +F  EIN  PG TPVS+FP +   +G  + +L+  ++E A
Sbjct: 308 AGCEGLARVDWFYTAE-GTLFLNEINTLPGFTPVSMFPAVWRESGLDYTDLITDLIELA 365


>gi|255324604|ref|ZP_05365721.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
 gi|255298510|gb|EET77810.1| D-alanine--D-alanine ligase [Corynebacterium tuberculostearicum
           SK141]
          Length = 353

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 94/351 (26%), Positives = 161/351 (45%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------------VLA 47
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R                 V+ 
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 48  HLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
            + P                            D+ F +LHG FGEDG +Q + EL  +PY
Sbjct: 67  EVNPGAELTLSLDPNARGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTIQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P ++       + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQRLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +   +  P  +  +      +++L+E  + G E+  GV+  A   +       
Sbjct: 187 SSIGVSKVNSWEEFPAAVDLALED--DEKILVEPEIVGQEVEIGVLHYADGTLLASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR DF
Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S  V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A   
Sbjct: 305 FVTEES--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353


>gi|5353567|gb|AAD42184.1|AF130997_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S                   
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 45  -------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                        ++   K       D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKALAYTVVKNAGITVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           K + +   + ++    +  ++LIE+ V G E+ C ++G+ +  +          + +   
Sbjct: 186 KAEELQAAIEEAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ +++Q  A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVREQIQETAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  E+L  ++E +
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIELS 340


>gi|300933868|ref|ZP_07149124.1| D-alanyl-alanine synthetase A [Corynebacterium resistens DSM 45100]
          Length = 379

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 100/353 (28%), Positives = 151/353 (42%), Gaps = 60/353 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----------LAHL 49
           +AVL GG SSE  VS  S  A    L+   ++V  + +      V               
Sbjct: 26  VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWVPGTVDTSELRADDRE 85

Query: 50  KP-----------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
            P                                   D+ F VLHG  GEDG +Q + EL
Sbjct: 86  MPSVRDRGEHIQLVLGAQTGELRYVSGGHAGRTYAHVDVIFPVLHGQNGEDGTIQGLFEL 145

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIK 131
             IPY  +G+LASA  MDK  +K++    GVP    ++       T D Q  +  P  +K
Sbjct: 146 AGIPYVGNGVLASAAGMDKEYTKRLAKQAGVPCGEELILAENRELTEDEQQRLGLPVFVK 205

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +   +     +  +   +H +++++E  + G E+ CGV+      V  
Sbjct: 206 PARGGSSIGISKVDTWEDFAHAVEIAF--DHDNKVIVEAMIHGREVECGVLQYPEGSVIA 263

Query: 192 IAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A             FY ++ KY     T  +PA I  +   EV+RLA    +A+ C G+
Sbjct: 264 SAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAVRTFEALNCEGL 323

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R DF     S +V   EIN  PG TP+S++P+M    G  + +LL  ++  A
Sbjct: 324 ARVDFFVT-DSGEVILNEINTLPGFTPISMYPQMFIAGGMGYPQLLDILIARA 375


>gi|221195258|ref|ZP_03568314.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
 gi|221185161|gb|EEE17552.1| D-alanine--D-alanine ligase B [Atopobium rimae ATCC 49626]
          Length = 324

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 112/307 (36%), Positives = 161/307 (52%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           + VL GG S E E+SL SG+    AL+ AGF+ V  +D+        L     D+AF  +
Sbjct: 11  VIVLAGGWSDEHEISLQSGEEVKKALKQAGFEKVELLDIALPGAIEKLVKSSYDVAFVAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG++GEDG +Q +LE+L IPYT SG+LASA+  +K  SK +    G+PV   I V+  T 
Sbjct: 71  HGHYGEDGCIQGLLEILHIPYTFSGVLASAMGTEKEVSKLMYKQAGIPVPKGIDVSAGTK 130

Query: 119 DSQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            +   I         P  +KP   GSS G+  +     +   +  +     GD++LIE+ 
Sbjct: 131 FTDEEIEQVVTDLGLPIFVKPAANGSSFGVTRVTNKDQLLQAIEDAG--AQGDRVLIEEC 188

Query: 172 VDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           V G E+T  V+G+           V + +FYS E+K    +  H+ PA++  D+Y   Q 
Sbjct: 189 VVGTEITVPVIGNDHPTALPIVEIVFEDEFYSIEVKAEPASLHHITPARLAPDVYARAQE 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH+A+GCRG+SRSDF+          LE N+ PGMT  S+ P+ A   G  F EL 
Sbjct: 249 LAICAHKALGCRGVSRSDFIV-KADGTPVILETNMIPGMTERSLIPDSARTDGIPFSELC 307

Query: 290 LWMVEDA 296
              +E A
Sbjct: 308 TRFIEYA 314


>gi|257885748|ref|ZP_05665401.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260558405|ref|ZP_05830601.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|293556889|ref|ZP_06675450.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
 gi|257821604|gb|EEV48734.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,501]
 gi|260075579|gb|EEW63885.1| D-alanine-D-alanine ligase [Enterococcus faecium C68]
 gi|291600973|gb|EFF31264.1| D-alanine--D-alanine ligase [Enterococcus faecium E1039]
          Length = 358

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 88/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  I + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|301300875|ref|ZP_07207047.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300214754|gb|ADJ79170.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus salivarius CECT
           5713]
 gi|300851474|gb|EFK79186.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 378

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +        +         +     +KP + GS
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192
           S+GI  ++ ++     L     +++   L+ E   +  E+ C V+G+  +         I
Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +        +      +P K+P  + KE+Q+++  A +A+  RG++R DFL D 
Sbjct: 247 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVDE 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 307 -NDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349


>gi|2738587|gb|AAC46067.1| D-alanine: D-alanine ligase [Buchnera aphidicola]
          Length = 306

 Score =  160 bits (403), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 96/303 (31%), Positives = 159/303 (52%), Gaps = 13/303 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GGI SER++S+ SG A   +L  +GF    ID      + L     D A+  LHG
Sbjct: 5   IAVLLGGILSERKISIKSGYAILQSLLRSGFNAYAIDTRDFPIMQLKKQGFDSAYIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---------VCPSI 111
             GEDG +Q ILE L IPYT SGI++SA+S+DK R+K +  S  +             S 
Sbjct: 65  TGGEDGSIQGILEYLNIPYTGSGIMSSAISLDKWRTKLLWKSLSLRVLPDIYLQKKDISK 124

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
               + +     +  P VIKP   GSS+GI ++     +   +  + ++N+ + ++IE++
Sbjct: 125 YTYSYILKKILKLKFPVVIKPNNAGSSIGITIVNHPDLLIDSI--NLAFNYSNNIIIEKF 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E T  ++    L      + K++FY Y  KY   ++ ++ P+ +     +E++++ 
Sbjct: 183 LKGTEYTVSILNKKVLPPI-KIITKNNFYDYSSKYIESSTEYICPSGLNYQKEEELKKIV 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +A  ++GC+G  R D + D    K + LEIN  PGMT  S+ P  +     SF  L+L 
Sbjct: 242 EIAWNSLGCKGCGRIDAILDNKD-KFWLLEINTIPGMTHRSLVPMASKKYRISFVNLILK 300

Query: 292 MVE 294
           +++
Sbjct: 301 ILK 303


>gi|161779893|gb|ABX79438.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++                 L
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEKLIALA 338


>gi|145597093|ref|YP_001161390.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
 gi|145306430|gb|ABP57012.1| D-alanine--D-alanine ligase [Salinispora tropica CNB-440]
          Length = 326

 Score =  160 bits (403), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 88/310 (28%), Positives = 144/310 (46%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 18  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPALVADPPDAVVIALHGAT 77

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L ++PY      AS  + DK  +K V+    +P    + +         
Sbjct: 78  GEDGSLRGVLDLCDVPYVGCDARASRRAWDKPSAKTVLREAHIPTPDWVALPHDRFSELG 137

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   ++P  +     + +    L+E+Y+
Sbjct: 138 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDSAALPAAM--VGCFAYDSTALVERYL 195

Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ++   V+              VP++  Y Y  +Y++  +T   PA++  ++ + V  
Sbjct: 196 SGTDVAVSVIDLGEGPQALPAVEIVPRNGVYDYAARYTAGRTTWHTPARLTSEVAEAVAG 255

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  AG  F  ++
Sbjct: 256 LAVAAHTALGLRDLSRVDLIVDA-DGQPHVLGVNVAPGMTETSLLPLAAQAAGLDFGRMI 314

Query: 290 LWMVEDASCL 299
             +V  A+  
Sbjct: 315 GTLVSQAAAR 324


>gi|126651496|ref|ZP_01723700.1| D-alanylalanine synthetase [Bacillus sp. B14905]
 gi|126591749|gb|EAZ85845.1| D-alanylalanine synthetase [Bacillus sp. B14905]
          Length = 381

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 89/341 (26%), Positives = 148/341 (43%), Gaps = 46/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----------VLAHL 49
           + +L GG S+E EVSLS+ +A   AL    ++V  I +                  +  L
Sbjct: 27  IGLLYGGKSAEHEVSLSTARAVTGALNFEEYEVYPIFITSEGEWRRGDRLEKPVSTIEEL 86

Query: 50  KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           +                          D+ F +LHG  GEDG VQ +LE+L +PY  +G+
Sbjct: 87  QFGDNTTILENNITDFLIDEHGKSVQFDVIFPLLHGTNGEDGTVQGLLEVLNLPYVGNGV 146

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
           LAS+  MDK+  KQ+    G+P  P     R              +  ++ P  +KP   
Sbjct: 147 LASSAGMDKVVMKQLFEIAGLPQVPYTYFIRSEWKNEQQAIIERCEERLTWPMFVKPANL 206

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI        +   +  +  ++    +        IEL         + V     P
Sbjct: 207 GSSVGISKATSRDELKKAIEVALQYDRKIVVEQGIIAREIELAVLGNDYPEVSVPGEIKP 266

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            ++FY Y+ KY+  ++  ++PA++P +    ++ LA  A +AI   G+ R+DF       
Sbjct: 267 VTEFYDYDSKYTDGSTALIIPAELPEETESSLKDLAKRAFKAIDGSGLVRADFFVTA-DH 325

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V+  E+N  PG TPVS++P +  +   S+ EL+  ++  A
Sbjct: 326 SVYINEVNTLPGFTPVSMYPLLWQHTNVSYPELINRLITLA 366


>gi|6624709|emb|CAB63849.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 94/334 (28%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A++   F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVDYDRFTVKTFFISQSGDFIKTQEFSHAPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   G S+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGCSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCNFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWENMGISYPELIERLVDLA 335


>gi|329947089|ref|ZP_08294465.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328526266|gb|EGF53283.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 388

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/362 (22%), Positives = 144/362 (39%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      VL    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGRWVLVEDDPAALELSDSR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVQITTDGLGQGALSAPLGGGELTVLGPTGPRVLGQIDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ + Y   G+LASA  MDK  +K ++ + G+   P ++V                  +S
Sbjct: 141 MMGVSYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEVILDACRSLS 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  +++ + +P  +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVERPEDLPGAIEAARAI--DPKVLVESGIVGREVEVAVLEGR 258

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P                             V PA+I  +    +   A  A
Sbjct: 259 GDDAPRVAEPGEIAMDASHGAGEFYDFETKYLAHDAVAMVCPARIGPEERALIMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF       +    EIN  PG TP S++P M   +G  + +L+  ++E
Sbjct: 319 FEAVGCEGLARVDFFLTEA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTDLVSELIE 377

Query: 295 DA 296
            A
Sbjct: 378 LA 379


>gi|325068478|ref|ZP_08127151.1| D-alanyl-alanine synthetase A [Actinomyces oris K20]
          Length = 388

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRNRYEVLPVGITPEGQWLLVEDDPAALELSDNR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEVLGQVDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ IPY   G+LASA  MDK  +K ++ + G+   P ++V                  ++
Sbjct: 141 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLAGAIKAARAV--DPKVLVESGIVGREVEVAVLQGR 258

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P                             V PA+I  +    +   A  A
Sbjct: 259 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIDPEARALLMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF       +    EIN  PG TP S++P M   +G  + EL+  ++E
Sbjct: 319 FEALGCEGLARVDFFLTEA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 377

Query: 295 DASCL 299
            A   
Sbjct: 378 LAVAR 382


>gi|315641806|ref|ZP_07896810.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
 gi|315482481|gb|EFU73020.1| D-alanine-D-alanine ligase [Enterococcus italicus DSM 15952]
          Length = 363

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/338 (24%), Positives = 149/338 (44%), Gaps = 46/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S+E EVS+ S  +   A+    ++V  + + +    V   L   KP+     
Sbjct: 11  IILLYGGKSAEHEVSVLSAFSVLQAIYYEYYQVQLVFISKKGEWVKGPLLTEKPESKDIL 70

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   + F +LHG  GEDG +Q  LE + +PY  +G++ SA
Sbjct: 71  QLTWKGEQASAKEIHPSEIKQEEAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVVTSA 130

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSL 139
             MDK+ +K ++ + G+P  P + V +              +  +  P  +KP   GSS+
Sbjct: 131 CGMDKIMTKYILQAAGIPQVPYVPVLKHQWKENPKQVFEQCEGSMLYPMFVKPANMGSSV 190

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKS 197
           GI   +  + +   L ++    +  + +IEQ ++  E+   ++G+  +  T     V   
Sbjct: 191 GISKAENREELQHALEEAY--QYDTRAVIEQGIEAREIEVAILGNEDVRTTMAGEIVKDV 248

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            FY Y  KY        +PA +P ++  + Q  A  A+  +G  G+SR DF       ++
Sbjct: 249 AFYDYNSKYIDNKIEMQIPASVPDEVQVKAQEYAKKAYTMLGGSGLSRCDFFLTSK-NEL 307

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 308 FLNELNTMPGFTQFSMYPSLWEQTGLKYGDLIEELIQL 345


>gi|284992426|ref|YP_003410980.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284065671|gb|ADB76609.1| D-alanine/D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 384

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 93/359 (25%), Positives = 152/359 (42%), Gaps = 67/359 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S+E  +S  S  A  + L+   + V  + + R    VLA             
Sbjct: 10  IAVVFGGRSAEHSISCVSAGAVLAGLDPDRYDVVPVGIARDGRWVLAEPAQRLAIADGEL 69

Query: 49  ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+ F VLHG +GEDG +Q +LE+ 
Sbjct: 70  PEVTGGTAVSLVGDPGGRGLAVLEPAAGVASALTEVDVVFPVLHGAYGEDGTIQGLLEMS 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124
            IPY  SG+ ASA SMDK  +K+++++ G+P    +++                  +  +
Sbjct: 130 GIPYVGSGVFASAASMDKEFTKKLLAAAGLPQGVHVVLRDASGAVSADPGVLDDADRERL 189

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----- 179
             P  +KP + GSS+GI  +      P  +  ++S     ++++E  V G E+ C     
Sbjct: 190 GLPVFVKPCRAGSSIGITKVTDWAQFPEAVATAASV--DPKVIVEAAVPGREVECGVLAR 247

Query: 180 -GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 ASL       P +++Y +  KY        +PA +  +  + VQ  A  A  A+
Sbjct: 248 PDGPPQASLPAEIRLRPGTEWYDFAAKYLDDAVDFDVPADLTPEQTRLVQETARKAFLAL 307

Query: 239 GCRGISRSDFLF-DPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            CRG++R DF          ++   E+N  PG TP+S++P M A  G  F  L+  +VE
Sbjct: 308 DCRGLARVDFFLGTGPDGADRLVVNEVNTMPGFTPISMYPRMWAATGVDFAALVDRLVE 366


>gi|284928951|ref|YP_003421473.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
 gi|284809410|gb|ADB95115.1| D-alanine--D-alanine ligase [cyanobacterium UCYN-A]
          Length = 350

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 151/344 (43%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + +L GG S E  VS++S +A   AL        + V  I + R+   +           
Sbjct: 5   IGLLFGGASEEHIVSINSARAILQALQIGNNLCKYNVIPIYIQRNGVWISGKIAEQVLQT 64

Query: 46  --------LAHL-------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                   L                + D+ F VLHG  GEDG +Q +L++++ P+  + +
Sbjct: 65  KQALPLVLLKKEEKFQLWQFPTEVNQIDVWFPVLHGPNGEDGTIQGLLKMMQTPFVGTSV 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKP 132
           L SA+ MDK+  K + S  G P                   ++   D +  +  P  IKP
Sbjct: 125 LGSAIGMDKIVMKTIFSQAGFPQVKYLTLEYSKLFSNAQYYSQLCNDIRTNLGYPCFIKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+G+  +     + + L  ++S+++   +        +E            V   
Sbjct: 185 ANLGSSVGVSKVSSHDELEIALKNAASYDNRIIIEEGIIARELECGVLGNDIPKASVVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              +SDFY Y+ KY   +S   +PA++P  I +++Q++A  A   I  RG+SR DF +  
Sbjct: 245 ITFESDFYDYKAKYKDTSSKIHIPAQLPNHIIEKIQQMAINAFTTINGRGLSRVDFFYIE 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++K+F  EIN  PG T  S++PE+    G  F EL+  ++E A
Sbjct: 305 GTQKIFINEINSFPGFTESSMYPELWIKTGLEFHELVDKLIELA 348


>gi|90962058|ref|YP_535974.1| D-alanyl-alanine synthetase A [Lactobacillus salivarius UCC118]
 gi|122448837|sp|Q1WT60|DDL_LACS1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|90821252|gb|ABD99891.1| D-alanine--D-alanine ligase [Lactobacillus salivarius UCC118]
          Length = 378

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 68  DVVTEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +        +         +     +KP + GS
Sbjct: 128 VASSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192
           S+GI  ++ ++     L     +++   L+ E   +  E+ C V+G+  +         I
Sbjct: 188 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +        +      +P K+P  + KE+Q+++  A +A+  RG++R DFL D 
Sbjct: 247 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVD- 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 306 KNDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 349


>gi|327489500|gb|EGF21293.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1058]
          Length = 353

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|227891078|ref|ZP_04008883.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
 gi|227866952|gb|EEJ74373.1| D-alanine--D-alanine ligase [Lactobacillus salivarius ATCC 11741]
          Length = 382

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 153/344 (44%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   + VS                          
Sbjct: 12  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYDVSVFMFTKKGFLLGNKDSMRIFDGENED 71

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     LA +K  D+ + V+HGN GEDG VQ +  LL  P+  SG
Sbjct: 72  DVVAEVIKDVDFSNPLANIQNLAEVKDVDVFYPVIHGNMGEDGTVQGLFRLLNKPWIGSG 131

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           + +S +S DK  +K++++  G+     +        +         +     +KP + GS
Sbjct: 132 VTSSGVSFDKDLTKKLLTLNGIRNTKYVLVTPENKADYPYAKVAEELGETLFVKPARQGS 191

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192
           S+GI  ++ ++     L     +++   L+ E   +  E+ C V+G+  +         I
Sbjct: 192 SVGIHKVRNEEEYNAALEDGFKYDY-KILVEEAIKNPREVECSVLGNRDIKASKLGAIRI 250

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +        +      +P K+P  + KE+Q+++  A +A+  RG++R DFL D 
Sbjct: 251 PESDDFYDYNNKFVDASGVVFEMPIKLPEKLTKEIQQMSLDAFRALDNRGLARMDFLVDE 310

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   ++ E+N  PG T +S++P++   +G S+ EL+  +++ A
Sbjct: 311 -NDVPYFGEVNTLPGFTNISLYPQLWEVSGISYSELIDQLIQLA 353


>gi|158321878|ref|YP_001514385.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
 gi|158142077|gb|ABW20389.1| D-alanine--D-alanine ligase [Alkaliphilus oremlandii OhILAs]
          Length = 349

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 154/343 (44%), Gaps = 51/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLK----- 50
           +AV+ GG SSE EVSL S  A    L+   + V +I + R    +     L  +K     
Sbjct: 6   VAVIFGGESSEYEVSLKSASAVMENLDIEKYDVIKIGITRDGKWLRYNGTLDKIKENTWF 65

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F VLHG  GEDG +Q + E+  IPY
Sbjct: 66  LDGSCRQIMLSPNKGDRKIIEIHPNEFVHTQIDIVFPVLHGRNGEDGTLQGLFEITGIPY 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYVIKPLK 134
               + AS++ +DK  + ++V   G  V  SI ++              +  P  +KP +
Sbjct: 126 VGCDVAASSICIDKDYAHKIVQYAGFDVPQSIAIDNRTKEDEINKFAENVGYPIYVKPSR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI   +    +   +  +       ++++E+ ++G E+ C +    D  +   + 
Sbjct: 186 EGSSIGITKAENHSDLMGGIEAALKL--DGKVVLEENIEGFEVGCAILGNDDLIVGTVDE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               + F+ +  KY+  NS   LPA+I  D+ + ++ +    ++A+GC G+SR D   D 
Sbjct: 244 IEVPNGFFDFTEKYTLQNSKIHLPARIDQDLSERIKEIGKGIYKALGCSGLSRVDLFVD- 302

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            + ++ + E+N  PG T  S FP M  +AG ++R++L  +++ 
Sbjct: 303 KNHRIVFNEVNTLPGFTTGSRFPNMLLHAGIAYRDILDKLIDL 345


>gi|332199700|gb|EGJ13775.1| D-alanine--D-alanine ligase family protein [Streptococcus
           pneumoniae GA41317]
          Length = 347

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 97/334 (29%), Positives = 159/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ------------------------- 35
           + +L GG S+EREVS+ S ++   A+    F V                           
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDSIKTQEFSHAPGQEDRL 64

Query: 36  -----IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                ID D+ V     + +  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPKLIERLVDLA 335


>gi|288929437|ref|ZP_06423282.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
 gi|288329539|gb|EFC68125.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 317 str.
           F0108]
          Length = 330

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 142/327 (43%), Gaps = 35/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE EVSL S +   S  +   + V  +D++R                    
Sbjct: 5   IAIVCGGNSSEHEVSLRSARGLYSFFDKDKYNVYIVDIERMNWKVDLGNGEKATIDKNNF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S      H+  D A+  +HG  GE+G++Q   EL+++PY+ SG+L  AL+ DK      +
Sbjct: 65  SFEHEGTHVFFDYAYITIHGTPGENGIMQGYFELIDMPYSTSGVLVEALTFDKYVLNNYL 124

Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                     + V             +  +  P  +KP   GSS G+  +K    +   L
Sbjct: 125 RGFGVNVAKSILVRRGQEYGIDERAVEEQLGMPCFVKPAADGSSFGVSKVKNVDQLAPAL 184

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNS 211
            ++      D  +IE ++DG E++ G                V  ++F+ Y+ K  +   
Sbjct: 185 RKALM--EDDSAVIESFLDGTEISVGCYRVKGETKVLPATEVVSHNEFFDYDAK-YNGQV 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGM 268
             + PA+I  +  + V       ++ +GC GI R D++       + K+  +E+N  PGM
Sbjct: 242 EEITPARIADETARRVADETARIYELLGCNGIIRIDYILTKEPDGTDKINLIEVNTTPGM 301

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP S  P+    AG   +++L  +VE+
Sbjct: 302 TPTSFIPQQVRAAGMEMKDVLSDIVEN 328


>gi|269129158|ref|YP_003302528.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
 gi|268314116|gb|ACZ00491.1| D-alanine/D-alanine ligase [Thermomonospora curvata DSM 43183]
          Length = 319

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 97/306 (31%), Positives = 157/306 (51%), Gaps = 16/306 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S EREVSL SG+  A AL          D D ++   L    PD  F VLHG
Sbjct: 12  VIVLAGGLSYEREVSLRSGRRVADALRALDVDAQVHDADATLLQTLQQAPPDAVFPVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GEDG ++ +LEL+ +PY  +   A  ++ DK  +K VV + G+   PS+ + +     
Sbjct: 72  SMGEDGAIRDVLELVGVPYVGARPDACRVAWDKPTAKSVVRAAGLATPPSVTLPKEVFHD 131

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP +GGS+LG  V+++   +P  +     + +GD  LIE+
Sbjct: 132 LGAAAVLECVVRRLGLPLFVKPARGGSALGASVVREAGDLPAAM--VGCFAYGDAALIER 189

Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +++G E+   V+              VP  + Y Y  +Y + ++  V PA++P ++ +  
Sbjct: 190 HIEGTEVAVSVIERDGEPVALPAVEIVPAGELYDYTARYDAGDTEFVTPARLPEEVARRA 249

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              A  AH+A+G R +SR+D + D    +V +LE+NV PGMT  S+FP   A AG +   
Sbjct: 250 AEAAVTAHRALGLRDLSRTDLIVDEA-GQVHFLEVNVAPGMTETSLFPRAVAAAGLNLGR 308

Query: 288 LLLWMV 293
           +L  ++
Sbjct: 309 ILHDLI 314


>gi|241205059|ref|YP_002976155.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. trifolii
           WSM1325]
 gi|240858949|gb|ACS56616.1| D-alanine/D-alanine ligase [Rhizobium leguminosarum bv. trifolii
           WSM1325]
          Length = 358

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 150/350 (42%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    + + R    +L++            
Sbjct: 10  IAVLFGGRSAEHEVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSNFEDGILATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ   E+  +P    G
Sbjct: 70  TEICLVPGGHGRMLAMPAHGAPHELARIDILFPVLHGPHGEDGSVQGATEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q     L ++    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEFAPALTEAF--RHDRTLLAEEFVRGREIEFSVLEDTAGELFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA++P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAVLKVPAELPQEIETAMRDVASKAFRAVGCDGMARIDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G ++ E++  +V+   A   R
Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGLARSRR 356


>gi|60391958|gb|AAX19284.1| D-alanine:D-lactate ligase [Paenibacillus thiaminolyticus]
          Length = 343

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG S E +VS+ S +  A+ +++  ++   I + +S    +              
Sbjct: 6   VAILFGGCSEEHDVSVKSAREIAANIDNEKYEPLYIGITKSGVWKMCEKPCAEWENSNCY 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+AF+ +H   GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLVKKNHEYEIHHVDVAFSGMHSKSGEDGSIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+ +    ++N+    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAICMDKSLTYTIAKNAGIAIPEFWVINKDDKPAADTFTYPVFVKPARSGSSYGVKKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G++S  +          +     
Sbjct: 186 VADELDAAIESARQ--YDSKILIEQAVLGCEVGCAVLGNSSELIVGEVDQIRLQHGIFRI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +  +    +Q  A   ++A+GCRG+SR D      + ++ 
Sbjct: 244 HQEAEPEKGSENAVITIPADLSAEERGRIQETAKKIYKALGCRGLSRVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG T  S +P M A AG +  EL+  ++
Sbjct: 303 LNEVNTLPGFTSYSRYPRMMAAAGITLPELIDRLI 337


>gi|145224798|ref|YP_001135476.1| D-alanyl-alanine synthetase A [Mycobacterium gilvum PYR-GCK]
 gi|190359168|sp|A4TE25|DDL_MYCGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145217284|gb|ABP46688.1| D-alanine--D-alanine ligase [Mycobacterium gilvum PYR-GCK]
          Length = 367

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 158/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V+ + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++++S G+PV   +      +  ++  +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+G+  +     +P  +  +    H  +++IE  V G EL CGV+      +
Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAIELAR--RHDPKVIIEAAVPGRELECGVLEFPDGHL 244

Query: 190 TEI----------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                           +  FY +E KY    +   +PAK+  D+ + ++ L+  A  AI 
Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 362


>gi|154503509|ref|ZP_02040569.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
 gi|153795609|gb|EDN78029.1| hypothetical protein RUMGNA_01333 [Ruminococcus gnavus ATCC 29149]
          Length = 351

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 157/351 (44%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICKTLLEKGHDAFLLDVFLGLENAPENLEDVFTLPGHGL 62

Query: 41  SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +   ++  +PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISETEPDLAAVKASRPDQSDCFFGPNVIELCRLADMTFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +LL I YT    L  A++MDK  +KQ+    GV     + + +   D       +S P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQIFMEAGVDTPSGVCLYKEDSDCSLESLGLSFPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  ++     L  S    + +++++E Y+ G E  CGV+   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTEEEYRQALKNSF--RYENEVVVETYIKGREFACGVIDGKALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ ++ Y  KY +  +  V PA I  +I + ++ L   A QA+     SR+DF+
Sbjct: 241 I-EIIPKNGWFDYANKYQANATEEVCPADISEEIAERMKALTVRAFQALKLNVYSRADFI 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDA-DGNLYCLEMNTLPGMTSASLLPKEALADGIEYGDLCELIIQKSMEAR 349


>gi|241890057|ref|ZP_04777355.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
 gi|241863679|gb|EER68063.1| D-alanine--D-alanine ligase [Gemella haemolysans ATCC 10379]
          Length = 355

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 155/339 (45%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  VSL + K+  +A++   + V  I                        
Sbjct: 6   IGIVYGGKSAEHSVSLLTAKSIINAIDKEKYNVFPIFISLEGNWARGEKITSEITDQHDL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L     K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  VFSNFDNDISGLLFEDGRKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142
           DK+  KQ+ ++  +P  P +    +T  ++           +  P  +KP   GSS+GI 
Sbjct: 126 DKVVMKQLFAAYDLPQLPYVHFIEYTWKNKKEALIAEINENLKYPLFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               +  +   +    +     ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEAELVKGI--EEALKFDKKIVVEQGAVGAKEIEVAVLGYNEVKTTDPGEIVNISST 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y + + +A  A +AI   G+ R+DF +     ++
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTTLYPKFREMAATAFRAISGSGLVRADFFYTKE-GEI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    S+ E++  +   A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVSYSEIIEELFALA 341


>gi|33861862|ref|NP_893423.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|39930839|sp|Q7V0F6|DDL_PROMP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33640230|emb|CAE19765.1| D-alanine--D-alanine ligase [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 355

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 152/347 (43%), Gaps = 52/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E +VS+SS K    AL        F V    +++    +           
Sbjct: 9   IGIIFGGESNEHDVSVSSAKTVFKALISKTNINRFWVKAFYINKHGVWLDNDQSLVLLKE 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  KRKNETIDKNQVFPKREINFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGG 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131
           GIL SAL MDK+  K++ S   +P    + +               ++    +  P  +K
Sbjct: 129 GILGSALGMDKILMKKIFSHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I   L ++       +++IE+ +D  EL CG++G+  L  +E
Sbjct: 189 PANSGSSLGISKAKTRSEIIKALQKAWEI--DSRIVIEEGLDVRELECGIIGNLKLTASE 246

Query: 192 IAV-PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           I     S  +       S+++  ++PA I   I ++++ +A  + +A+   G +R DF  
Sbjct: 247 IGEVSYSTDWYDYDSKYSMDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFL 306

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + +S K+F  EIN  PG T  S+FP +   +G +  +L+  +V+ +S
Sbjct: 307 EKISNKIFLNEINTIPGFTSKSMFPMLWNASGLNIDQLVAKLVDISS 353


>gi|158318856|ref|YP_001511364.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158114261|gb|ABW16458.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 348

 Score =  159 bits (402), Expect = 4e-37,   Method: Composition-based stats.
 Identities = 90/335 (26%), Positives = 141/335 (42%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------K 50
           + ++ GG S E  VS+ S +  A  ++   ++   I + RS    L             +
Sbjct: 6   IGIIFGGRSEEHPVSVRSAQEIAKNIDAEKYEPFYIGIARSGAWKLCERPDENWENGSCR 65

Query: 51  P-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           P                         DLA  VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVLSPDRSVHGLLVLEQGRYETISLDLALPVLHGRLGEDGAMQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V    G+       V         L++ P  +KP + GSS G+  + 
Sbjct: 126 SSALCMDKSLAYTVARGAGIATPNFWTVTANEKVDADLLTYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE+ V G E+ C ++G+            S  + +   
Sbjct: 186 RKEELSGAVDTAR--QYDSKVLIEEAVVGSEVGCALLGNDLDLTAGEVDRISLSHGFFRI 243

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          NST ++PA I  +    VQ  A   ++A+GCRG+SR D        KV 
Sbjct: 244 HQESAPESGSENSTAIVPADISAEARSLVQETAKAVYRALGCRGLSRVDMFL-QEDGKVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PGMT  S +P M A AG    E++  +V
Sbjct: 303 LNEVNTLPGMTSYSRYPRMMAAAGLPLAEVIDRLV 337


>gi|152965331|ref|YP_001361115.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
 gi|190359142|sp|A6W7R2|DDL_KINRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151359848|gb|ABS02851.1| D-alanine--D-alanine ligase [Kineococcus radiotolerans SRS30216]
          Length = 376

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/362 (24%), Positives = 149/362 (41%), Gaps = 68/362 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE  +S  +     +AL+   + V  I +  +   VL              
Sbjct: 9   VAVVFGGRSSEHAISCVTAAGVLAALDGDVYDVVPIGITTTGRWVLVEDPARFELTDGAL 68

Query: 50  -------------------------------------KPDLAFNVLHGNFGEDGLVQAIL 72
                                                + D+   +LHG FGEDG +Q +L
Sbjct: 69  PEVPATGTPVGLPLDVDTKALQRLGGAPGAPALAELGEVDVVLPLLHGPFGEDGTLQGLL 128

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------I 124
           EL +  Y  SG+LASA  MDK   K +++  G+PV P         D+           +
Sbjct: 129 ELSDTRYVGSGVLASAAGMDKQVMKLLLAGQGLPVGPWTSFRARRWDTDRDGVVAEVEAL 188

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP + GSS+GI  +   + +   + ++   +H  ++++E  + G E+ CGV+ D
Sbjct: 189 GYPVFVKPARAGSSIGITRVTSREGLAAAVAEAV--SHDPKVVVEAALVGREIECGVLED 246

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQ 236
                   ++P          +    + +          PA +P D+   V+R A    +
Sbjct: 247 LDGGEPLTSLPGEVEVVGGHDFYDFEAKYLDSGNVRLTCPADLPDDVVAAVRRTAVRVFE 306

Query: 237 AIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           A+G  G++R D   DP   +  +   EIN  PG TP S++P M A  G  + EL+  +++
Sbjct: 307 AMGAEGLARVDLFVDPARGEDGIVVNEINTMPGFTPFSMYPRMWAATGVDYPELVHRLIQ 366

Query: 295 DA 296
            A
Sbjct: 367 LA 368


>gi|257869524|ref|ZP_05649177.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
 gi|257803688|gb|EEV32510.1| vancomycin resistance protein vanC [Enterococcus gallinarum EG2]
          Length = 344

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++                 L
Sbjct: 5   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 64

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 65  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 124

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 125 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 185 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 242

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 243 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 301

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 302 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 339


>gi|267275|sp|P29753|VANC_ENTGA RecName: Full=Vancomycin C-type resistance protein VanC; AltName:
           Full=VanC ligase
 gi|148325|gb|AAA24786.1| D-alanine-D-alanine ligase-related protein [Enterococcus
           gallinarum]
 gi|161779897|gb|ABX79440.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  159 bits (402), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S  +   A++   ++V  I +  ++                 L
Sbjct: 4   IAVLFGGNSPEYSVSLTSAASVIQAIDPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|324995315|gb|EGC27227.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK678]
          Length = 353

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------------------- 43
           +L GG S+EREVS+ S ++   A+    F V    + +                      
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 44  ----LVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                +   +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|227550860|ref|ZP_03980909.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257887888|ref|ZP_05667541.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257893313|ref|ZP_05672966.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257896494|ref|ZP_05676147.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|293379273|ref|ZP_06625419.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
 gi|227179958|gb|EEI60930.1| D-alanine--D-alanine ligase [Enterococcus faecium TX1330]
 gi|257823942|gb|EEV50874.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,141,733]
 gi|257829692|gb|EEV56299.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,408]
 gi|257833059|gb|EEV59480.1| D-alanine:D-alanine ligase [Enterococcus faecium Com12]
 gi|292642069|gb|EFF60233.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecium
           PC4.1]
          Length = 358

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|69248310|ref|ZP_00604712.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257878840|ref|ZP_05658493.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257881476|ref|ZP_05661129.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257890698|ref|ZP_05670351.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257899460|ref|ZP_05679113.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|258615090|ref|ZP_05712860.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|261207111|ref|ZP_05921800.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289567230|ref|ZP_06447615.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|293560259|ref|ZP_06676756.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|293567809|ref|ZP_06679150.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|293573032|ref|ZP_06683974.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|294615130|ref|ZP_06695016.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|294621793|ref|ZP_06700952.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|314938930|ref|ZP_07846195.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|314943519|ref|ZP_07850286.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|314948186|ref|ZP_07851580.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
 gi|314951546|ref|ZP_07854592.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|314991591|ref|ZP_07857067.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|314994924|ref|ZP_07860051.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|13346887|gb|AAB17902.2| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|33336048|gb|AAQ12892.1| D-alanine:D-alanine ligase [Enterococcus faecium]
 gi|68194454|gb|EAN08955.1| D-alanine--D-alanine ligase [Enterococcus faecium DO]
 gi|257813068|gb|EEV41826.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,230,933]
 gi|257817134|gb|EEV44462.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,502]
 gi|257827058|gb|EEV53684.1| D-alanine:D-alanine ligase [Enterococcus faecium 1,231,410]
 gi|257837372|gb|EEV62446.1| D-alanine:D-alanine ligase [Enterococcus faecium Com15]
 gi|260078739|gb|EEW66441.1| D-alanine-D-alanine ligase [Enterococcus faecium TC 6]
 gi|289160978|gb|EFD08893.1| D-alanine-D-alanine ligase [Enterococcus faecium D344SRF]
 gi|291589394|gb|EFF21201.1| D-alanine--D-alanine ligase [Enterococcus faecium E1071]
 gi|291592072|gb|EFF23695.1| D-alanine--D-alanine ligase [Enterococcus faecium E1636]
 gi|291598625|gb|EFF29683.1| D-alanine--D-alanine ligase [Enterococcus faecium U0317]
 gi|291605709|gb|EFF35146.1| D-alanine--D-alanine ligase [Enterococcus faecium E1162]
 gi|291606934|gb|EFF36314.1| D-alanine--D-alanine ligase [Enterococcus faecium E980]
 gi|313590906|gb|EFR69751.1| D-ala D-ala ligase [Enterococcus faecium TX0133a01]
 gi|313593875|gb|EFR72720.1| D-ala D-ala ligase [Enterococcus faecium TX0133B]
 gi|313596240|gb|EFR75085.1| D-ala D-ala ligase [Enterococcus faecium TX0133A]
 gi|313597891|gb|EFR76736.1| D-ala D-ala ligase [Enterococcus faecium TX0133C]
 gi|313641639|gb|EFS06219.1| D-ala D-ala ligase [Enterococcus faecium TX0133a04]
 gi|313645319|gb|EFS09899.1| D-ala D-ala ligase [Enterococcus faecium TX0082]
          Length = 358

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 148/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|294638206|ref|ZP_06716460.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
 gi|291088642|gb|EFE21203.1| D-alanine--D-alanine ligase A [Edwardsiella tarda ATCC 23685]
          Length = 409

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 80/352 (22%), Positives = 147/352 (41%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLKP-- 51
           + ++ GG S E EVSL S K   +A++   F V  I +D+            L+H     
Sbjct: 47  VGIVFGGKSCEHEVSLQSAKNIVAAIDHTRFDVMLIGIDKQGYWYRCPEHGYLSHEDDPQ 106

Query: 52  -----------------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+ F ++HG  GEDG +Q +L++L 
Sbjct: 107 HIALNHASAHRLAVLPGAHSGQLIDTVTGESLPSLDVIFPIVHGTQGEDGCLQGMLKILN 166

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVI 130
           +P+  S I+ SA  MDK   K+++   G+PV P +        +         +     +
Sbjct: 167 LPFVGSDIIGSAACMDKDICKRLLRDAGLPVTPFVTLTRDTQADYDYETLSRQLGSTLFV 226

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  ++  +     + ++       +++IE  V G E+ C ++G+ +   +
Sbjct: 227 KPANQGSSVGVSKVRNAEEYARAIAEAL--RFDHKVIIELGVVGREIECAILGNEAAQAS 284

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      Y      +++       PA++  +  + V+++A  A QA+ CRG++R D
Sbjct: 285 VCGEIILHSDFYSYDSKYISAQGAQVVVPAQMTPESSERVRQIALQAFQALECRGLARVD 344

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                   +V   EIN  PG T +S++P++    G  +  L+  ++E A   
Sbjct: 345 VFLTEE-GEVIINEINTLPGFTNISMYPKLWQACGIDYPTLITRLIEFALAR 395


>gi|190359232|sp|A3CLS3|DDL_STRSV RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 348

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 68  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 188 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 343


>gi|126664285|ref|ZP_01735276.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
 gi|126623705|gb|EAZ94402.1| D-alanylalanine synthetase [Flavobacteria bacterium BAL38]
          Length = 324

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 88/322 (27%), Positives = 146/322 (45%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL+SG    + +    F   +I +                    D 
Sbjct: 4   VAIIMGGYSSEYKISLTSGNVVFNNINRTKFNPYRIHIFKEKWVYVDENDAEFPIDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D+ FN +HG  GEDGL+QA  ELL IP T      +AL+ +K     V+
Sbjct: 64  SVVINGTKVNFDVVFNAIHGTPGEDGLMQAYFELLHIPQTSCDYYQAALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N     +   I      P  +KP K GSS GI  +K        +  
Sbjct: 124 KPYGIKTAESYYLNLGDDINVETILAKVGLPCFVKPNKSGSSFGISKVKTAAEFLPAIEN 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
           +      D+++IE ++DG E++ GV+                   +    +     S  +
Sbjct: 184 AY--KEDDEIIIESFLDGTEVSVGVIYYKGTITVLPITEIVSENDFFDYEAKYLGKSKEI 241

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++  +++ ++  A++ +  +G SRS+F+   ++ + F LE+N  PG+T  SI 
Sbjct: 242 TPARISDELKVKIETVSKRAYEVLKMKGFSRSEFII--VNNEPFMLEMNTIPGLTTESIL 299

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+ A  AG S  EL    +E A
Sbjct: 300 PQQAREAGISLPELFENAIELA 321


>gi|125717545|ref|YP_001034678.1| D-alanyl-alanine synthetase A [Streptococcus sanguinis SK36]
 gi|125497462|gb|ABN44128.1| D-ala,D-ala ligase, putative [Streptococcus sanguinis SK36]
          Length = 353

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|325678813|ref|ZP_08158411.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
 gi|324109317|gb|EGC03535.1| D-ala D-ala ligase N-terminal domain protein [Ruminococcus albus 8]
          Length = 361

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 86/350 (24%), Positives = 156/350 (44%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------------- 45
           +AV+ GG S+E +VS+ S      ++ +    ++V  I + +    +             
Sbjct: 6   IAVVFGGKSNEHDVSVVSAAHVIRSINENSDRYEVICIGITKKGHWLRYMGSTEDIENGK 65

Query: 46  -----------------------LAH------LKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                  L        +K D+ F VLHG  GEDG +Q I ++ E
Sbjct: 66  WTDHPDNLACIFSPDPVHRGFIQLEEDGSYSNIKVDVVFPVLHGKNGEDGTIQGIFQMAE 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPY 128
           +P+    +++SA  MDK  +  ++ + G+     I +               +  +  P 
Sbjct: 126 VPFVGCDLISSACCMDKDVTHTILEAHGIKTAKWISMIYRDLAELDEKCALMEKKLGYPM 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI      + +   +  +    H  ++++EQ V G+EL C VMG+ +  
Sbjct: 186 YVKPANCGSSVGISKAHDLEELKAGIKAAF--THDQKVVVEQEVKGVELECAVMGNDTPF 243

Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                     ++FY Y+ KY++  S   +PA +   + +EV+ +A  A +A+GC G++R 
Sbjct: 244 ASTVGQIAAANEFYDYDAKYNNAASKTYIPAMVDEKVIEEVRDVAVRAFKAMGCGGLARV 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       +V   EIN  PG T +S++P++  +AG S+ E    +++ A
Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTKISMYPKLMEHAGISYAEQEDRLIKLA 352


>gi|309798670|ref|ZP_07692937.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
 gi|308117716|gb|EFO55125.1| D-alanine--D-alanine ligase [Streptococcus infantis SK1302]
          Length = 347

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 98/334 (29%), Positives = 160/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFAVKTFFISQSGDFIKTQEFTQTPGQDERL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +           + +  +S P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLASKIAEVEEKLSYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENKEELRQALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     +VF  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 335


>gi|5305926|gb|AAD41882.1|AF153050_3 D-alanine:D-lactate ligase [Enterococcus faecium]
 gi|222159814|gb|ACM47287.1| D-Ala:D-Lac ligase VanD [Enterococcus faecium]
          Length = 343

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 143/336 (42%), Gaps = 45/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLGWEQYAGD 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+ F ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVVFPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + MDK  +  VV + G+ V    ++          +  P  +KP + GSS G+  + 
Sbjct: 126 SSVICMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDLVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           K + +   + ++    +  ++LIE+ V G E+ C ++G+ +  +          + +   
Sbjct: 186 KAEELQAAIREAR--KYDSKILIEEAVTGSEVGCAILGNENDLMAGEVDQIELRHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ + +++ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIRKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             E+N  PG T  S +P M   AG++  E+L  ++E
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLSEILDRLIE 338


>gi|54026176|ref|YP_120418.1| D-alanyl-alanine synthetase A [Nocardia farcinica IFM 10152]
 gi|81373693|sp|Q5YRY7|DDL_NOCFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|54017684|dbj|BAD59054.1| putative D-alanine-D-alanine ligase [Nocardia farcinica IFM 10152]
          Length = 363

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 95/356 (26%), Positives = 156/356 (43%), Gaps = 61/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++   I +    G VLA+            
Sbjct: 7   VAVVFGGRSNEHAVSCVSAGSVLRHLDPTRYEAVPIGITPQGGWVLANSDVAAIGLSHEA 66

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F +LHG FGEDG +Q +LEL 
Sbjct: 67  LPSVDAGGTALTLTADPTRGGELVALDDAGAVLGTVDVVFPILHGPFGEDGTLQGMLELA 126

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIK 131
            +PY   G+LASA  MDK  +K+++++ G+PV   +++   T     + +  +  P  +K
Sbjct: 127 GVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGTQVVLRPGTATLTEEQRERLGLPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-- 189
           P + GSS+G  + K D    LD   +++  H  ++++E  + G E+ CGV+      +  
Sbjct: 187 PARAGSSIG--ITKVDDWAALDTAIAAAREHDPKVIVEAGIVGREVECGVLEFPDGRISA 244

Query: 190 ------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                          FY ++ KY        +PAK+  DI ++V+ LA  A QA+ C+G+
Sbjct: 245 SVLAEIRMPEGDGPQFYDFDTKYLDDVCEFDVPAKLDDDIAEQVRELAVRAFQALDCQGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M    G  +  L+  ++E A   
Sbjct: 305 ARVDFFVTADG--PVINEINTMPGFTSISMYPRMWEATGIDYGTLVSTLIETALAR 358


>gi|269123840|ref|YP_003306417.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
 gi|268315166|gb|ACZ01540.1| D-alanine/D-alanine ligase [Streptobacillus moniliformis DSM 12112]
          Length = 299

 Score =  159 bits (401), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 88/299 (29%), Positives = 157/299 (52%), Gaps = 7/299 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           + V+ GG+S+EREVS+++GK   + L+ + ++V +I++  +     +  L  D A+  LH
Sbjct: 3   IGVIYGGVSTEREVSINTGKEIIANLDKSKYEVVEIEISKKEDIFKVVDLNLDFAYIALH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G FGE G VQAILE   I Y+ SGIL+SA+ MDK  +K +  + GV +     + +    
Sbjct: 63  GEFGESGDVQAILETAGIKYSGSGILSSAICMDKDITKVLAKNSGVRIINGRCIKKGENI 122

Query: 120 SQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               ++     ++KP +GGSS+G+     D+ +   L +       +++LIE+   GIE+
Sbjct: 123 KFSDLNLGEKIILKPNRGGSSIGVYFATNDEELEYGLNEIFKLGE-NEVLIEEMKSGIEI 181

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           +  ++         I   K  F+ Y  KY +  +   +       +  E+      A+ A
Sbjct: 182 SVPIIAGKVFPTLLIEPLKDTFFDYTSKYENGGAKEYV-YFFEESLQNEINDFTIKAYNA 240

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C+G +R D++   +  K ++LE+N  PGMT  S+ P+   Y GYS+ E L  +++++
Sbjct: 241 VKCKGFARIDYIL--VDNKAYFLEVNTLPGMTKNSLLPKSTLYMGYSYSETLDLLIKES 297


>gi|266620111|ref|ZP_06113046.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
 gi|288868339|gb|EFD00638.1| D-alanine--D-alanine ligase [Clostridium hathewayi DSM 13479]
          Length = 354

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/345 (26%), Positives = 145/345 (42%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            VL GG SSE  VS  S     + +    + +  I +      +                
Sbjct: 7   VVLFGGQSSEHVVSCMSVVNVINHMNREKYDLLLIGITEDGHWIKTESAEDIESGRWREG 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +K D+ F VLHG FGEDG VQ +LEL  IPY   G
Sbjct: 67  KTSAVISPDATKQCVILTEGDRAEFVKVDVVFPVLHGLFGEDGTVQGLLELARIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLKG 135
           +LASA+SMDK+ +K VV   GV     + V R             +   + P  +KP   
Sbjct: 127 VLASAVSMDKLYTKIVVDDLGVRQAAYVPVMRSDLGDMEAVVGRVEAKFTYPVFVKPSNA 186

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTE 191
           GSS G+      + +   L +++   H  ++L+E+ + G E+ C V              
Sbjct: 187 GSSKGVARADSREELEAALYEAA--KHDRKILVEEMIKGREIECAVFGGGLVPVEASGVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY + +S  V+  ++P D    V+  A    +A+   G++R DF   
Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVNPELPGDAANTVREAAKAIFRAVDGYGLARVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                V + EIN  PG T +S++P +   AG S  +L+  +V+ A
Sbjct: 304 KDDGTVVFNEINTLPGFTAISMYPMLWEAAGVSKDQLVDRLVDHA 348


>gi|19704786|ref|NP_604348.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|39930908|sp|Q8RDQ4|DDL_FUSNN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19715123|gb|AAL95647.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 287

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I   +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKSYRP 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284


>gi|118464178|ref|YP_883000.1| D-alanyl-alanine synthetase A [Mycobacterium avium 104]
 gi|189083043|sp|A0QJB2|DDL_MYCA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118165465|gb|ABK66362.1| D-alanine--D-alanine ligase [Mycobacterium avium 104]
          Length = 369

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 9   VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  +PY  +G+ ASA  MDK  +K++ ++ G+P+    ++           +  +  P  
Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +   +  +   +H  ++++E  + G EL CGV+       
Sbjct: 189 VKPARGGSSIGVSRVSSWDELDAAVAAAR--DHDPKVIVEAAIAGRELECGVLEMPDGTV 246

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  +I   V+ LA  A +A+ 
Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALTR 364


>gi|206602129|gb|EDZ38611.1| D-alanine--D-alanine ligase [Leptospirillum sp. Group II '5-way
           CG']
          Length = 303

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/298 (30%), Positives = 142/298 (47%), Gaps = 6/298 (2%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           MGG S E  VS  SGKA   AL   G++   ++    +   L    PD+ F   HG  GE
Sbjct: 1   MGGDSPEAAVSRMSGKAVLEALRSRGYEAIPVEAGPDLFHTLLRTSPDVCFLATHGGHGE 60

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +G +Q  LE+L IPYT SG+L SAL M K  S+ +    G+ V  ++ +      +   I
Sbjct: 61  NGALQGCLEVLGIPYTGSGVLGSALGMSKSASRALFRQGGLDVPETVAIEAGEKVTPDKI 120

Query: 125 SPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P   ++KP   GSS+G+  +     +P  L    +  H  ++L+E ++ G E+   ++
Sbjct: 121 PFPLPFMVKPESAGSSIGVTRVDHFSDLPQAL--LEAEKHSPRVLVEPFLAGREVQSAIL 178

Query: 183 GDASLDVT-EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               L     +      FY+Y  KY    S H+ PA +  D+   ++     A   +  R
Sbjct: 179 DGRYLGAIEIVPDSSEPFYTYASKYQKGKSRHIFPAPLTSDVAARLEEATLRAFGLLELR 238

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R D L    + +V  LE+N  PG+T  S+ PE+A   G SF +L+  ++  A   
Sbjct: 239 GVARMDTLVLE-NGRVVVLEMNTLPGLTETSLVPEIARGCGLSFEDLVETILSSARLD 295


>gi|22298066|ref|NP_681313.1| D-alanyl-alanine synthetase A [Thermosynechococcus elongatus BP-1]
 gi|39930889|sp|Q8DLH0|DDL_THEEB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22294244|dbj|BAC08075.1| D-alanine:D-alanine ligase [Thermosynechococcus elongatus BP-1]
          Length = 343

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/339 (26%), Positives = 148/339 (43%), Gaps = 49/339 (14%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLVLAHL- 49
           + +L GG S E EVS+ S          G           ++V  I +++          
Sbjct: 6   VGLLFGGRSREHEVSVVSAAAIAQAFAAGDN------GDRYEVIPIYIEKDGRWRHTERV 59

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HG  GEDG +Q +LEL++ PY  SG+ ASA+
Sbjct: 60  GIPEGTAPESSLWQFPAVVDTIDVWFPIVHGPNGEDGTIQGLLELMQRPYVGSGVAASAI 119

Query: 90  SMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGS 137
            MDK+  K V  + G+P  P +              N      +  +  P  +KP   GS
Sbjct: 120 GMDKILMKTVFGAIGLPQVPYVALQRSDLWSDPCRYNHLCDRIETELGYPCFVKPANLGS 179

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI   K  Q +   L  ++  +    +        +E            V       S
Sbjct: 180 SVGISKAKNRQQLTTALEVAAELDRRIIVEAGVVARELECAVLGNDKPQASVVGEITYSS 239

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   +   +PA+IP  + ++++ L+  A QA+G  G++R DF + P + +V
Sbjct: 240 EFYDYETKYTDGRAQLHIPAEIPPAVSEQIRSLSLQAFQALGAAGLARFDFFYVPSTGEV 299

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              E+N  PG T +S++P++ A +G SF EL+  +V+ A
Sbjct: 300 LINEVNTLPGFTALSMYPQLWAASGLSFPELVHRLVQLA 338


>gi|227874805|ref|ZP_03992958.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|306818097|ref|ZP_07451828.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
 gi|227844580|gb|EEJ54736.1| D-alanine--D-alanine ligase [Mobiluncus mulieris ATCC 35243]
 gi|304649061|gb|EFM46355.1| D-alanine-D-alanine ligase [Mobiluncus mulieris ATCC 35239]
          Length = 374

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 146/360 (40%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +            
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++ +    H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236
                   A P               S +         +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|327200743|pdb|3R23|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327200744|pdb|3R23|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis
 gi|327533810|pdb|3R5X|A Chain A, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533811|pdb|3R5X|B Chain B, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533812|pdb|3R5X|C Chain C, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
 gi|327533813|pdb|3R5X|D Chain D, Crystal Structure Of D-Alanine--D-Alanine Ligase From
           Bacillus Anthracis Complexed With Atp
          Length = 307

 Score =  159 bits (401), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 81/303 (26%), Positives = 145/303 (47%), Gaps = 9/303 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+SSE++VS+ +G    + L+   +++  I ++    L+      D A   LHG
Sbjct: 6   IGVIXGGVSSEKQVSIXTGNEXIANLDKNKYEIVPITLNEKXDLIEKAKDIDFALLALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFT 117
            +GEDG VQ  LE L IPY+ S  L+S +  DK  SK+++   G+     I         
Sbjct: 66  KYGEDGTVQGTLESLGIPYSGSNXLSSGICXDKNISKKILRYEGIETPDWIELTKXEDLN 125

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ G E+
Sbjct: 126 FDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISXLETVFEW--DSEVVIEKYIKGEEI 183

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +   ++A
Sbjct: 184 TCSIFDG-KQLPIISIRHAAEFFDYNAKYDDASTIEEV-IELPAELKERVNKASLACYKA 241

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C   +R D          +  E+N  PG T  S+ P+ A  AG  + +LL  ++E + 
Sbjct: 242 LKCSVYARVDXXV--KDGIPYVXEVNTLPGXTQASLLPKSADAAGIHYSKLLDXIIETSL 299

Query: 298 CLR 300
            +R
Sbjct: 300 RVR 302


>gi|330466252|ref|YP_004403995.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
 gi|328809223|gb|AEB43395.1| D-alanine--D-alanine ligase [Verrucosispora maris AB-18-032]
          Length = 368

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 157/358 (43%), Gaps = 62/358 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG S E  +S  S  +   AL+   F+V  + + R+   VL    P         
Sbjct: 9   VAIVFGGRSPEHGISCVSAGSVLGALDPDEFEVVPVGITRAGQWVLTSGDPTELAINSRR 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEITAESGADIVLRADPTGSGLLVLDPTEGPRALANVDVVFPVLHGAYGEDGTIQGMLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVI 130
           +  IPY  + + ASA +MDK  +K++ ++ G+P+ P  ++        + +  +  P  +
Sbjct: 129 MAGIPYVGAKVFASAAAMDKEFTKKICAAEGIPIGPYAVLRSGMTLSEEDKQRLGLPVFV 188

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MG 183
           KP + GSS G+  +     +   +  +       ++L+E  + G E+ CGV         
Sbjct: 189 KPSRAGSSFGVSKVSDWADLEAAIAIAREI--DSKVLVEGAIIGREIECGVLEGEAGGTP 246

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +AS+      V   DFY +E KY        + +PA +P  + ++V+  A  A  A+ C 
Sbjct: 247 EASVLAEVRVVGDYDFYDFEAKYIDAESACEYDVPADLPERVARQVRDYAVRAFTALDCA 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G++R+DF   P    ++  EIN  PG TP S+FP M A +G  + +L+  ++  A   
Sbjct: 307 GLARADFFVTPELD-IYLNEINTMPGFTPTSMFPRMWAASGLEYPKLVDRLIRTALTR 363


>gi|238793959|ref|ZP_04637578.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
 gi|238726726|gb|EEQ18261.1| D-alanine--D-alanine ligase [Yersinia intermedia ATCC 29909]
          Length = 368

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 84/348 (24%), Positives = 145/348 (41%), Gaps = 55/348 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP- 51
           + V+ GG S+E EVSL S K    A++   F V+ + +D+            +L    P 
Sbjct: 6   VGVIFGGKSAEHEVSLQSAKNIVEAIDKEKFDVTLLGIDKQGEWHVNDASSYLLNAENPA 65

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F ++HG  GEDG +Q +L +  I
Sbjct: 66  LISLNHSNKNVALIPGQEQQQLIAADNATALAQLDVIFPIVHGTLGEDGSLQGLLRMANI 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  SG++ SA+SMDK  +K+++   G+ + P I        N         +  P  IK
Sbjct: 126 PFVGSGVVGSAVSMDKDIAKRLLRDAGLNIAPFITLTRANKDNYSFEQMTAKLGLPLFIK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G+  ++        +  +   +   ++L+E  + G E+ C V+G+ +   + 
Sbjct: 186 PANQGSSVGVSKVRNAAEYQQAVTLAF--DFDHKVLVESAIVGREIECAVLGNDNPRASL 243

Query: 192 IAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     Y      +N      V+PA I       ++ +A  A + + CRG++R D 
Sbjct: 244 CGEVVVSDEFYSYDTKYINETGAQVVIPAVIDSAASDHIRAVALAAFRTLECRGLARVDV 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              P    V   EIN  PG T ++++P++    G    EL+  ++E A
Sbjct: 304 FLTPE-NTVIINEINTLPGFTNINMYPKLWRATGVGSTELITTLIELA 350


>gi|300741707|ref|ZP_07071728.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
 gi|300380892|gb|EFJ77454.1| D-alanine--D-alanine ligase [Rothia dentocariosa M567]
          Length = 374

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 150/360 (41%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +     SA++ + + V  I + +     L +L+          
Sbjct: 10  VALLCGGRSSEHPISLITAVGVLSAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F ++HG FGEDG +Q +LE
Sbjct: 70  AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           L E+PY   G+ ASA+ MDK   K    S G+ V P  +V       +          + 
Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGPYEVVTDRQWTHEREESLKRITALG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS GI  + K + +   + ++    H  ++++E  + G E+ CGV+   
Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHDAKIIVEAGIVGREIECGVLDGH 247

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236
             D+   + P       E                     PA +P D+ + ++ LA  A  
Sbjct: 248 HGDMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR+DF + P   ++   E+N  PG TP+S++  M    G S+ EL+  ++  A
Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366


>gi|296327762|ref|ZP_06870301.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
 gi|296155109|gb|EFG95887.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           nucleatum ATCC 23726]
          Length = 287

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 104/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D R+          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQKQGYDAYGVILDERNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I   +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKSYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAEEAVKKLA------KPIIEDYIIGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSVHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GYSF +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYSFDDVVRITVET 284


>gi|254383276|ref|ZP_04998629.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
 gi|194342174|gb|EDX23140.1| D-alanylalanine synthetase [Streptomyces sp. Mg1]
          Length = 385

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 152/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +  A   +++ + ++V  I +       L   +P         
Sbjct: 19  VAVVFGGRSSEHAISVVTAGAVLRSIDRSKYEVLPIGITTDGRWALTADEPSRMAIADRK 78

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG +Q 
Sbjct: 79  LPSVDDLADSEDGAVVLSVDPANREVVYTEPGAVPKALGEVDVVFPVLHGPYGEDGTLQG 138

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  IPY  SG+LASA+  DK   K+V +S G+ V P + V                 
Sbjct: 139 LLELAGIPYVGSGVLASAVGQDKDYMKRVFTSFGLNVGPYLTVRPREWTRDADAARGRIL 198

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  IKP + GSS+GI  +     +   + ++    H  ++++E  + G E+ 
Sbjct: 199 DFAEEHGWPLFIKPARAGSSIGITKVDDVSGLDEAVREAQ--RHDPKIIVEARLRGREIE 256

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         +++ ++PA +  +   EV+RLA  A
Sbjct: 257 CGVLEFEDGPRASVPAEIPPVSSHDFYDFEAKYIDSASGIVPAPLTPEQTAEVRRLAVEA 316

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P M   +G  ++EL+  +++
Sbjct: 317 FEAASCEGLVRADFFLTE-DGTFVINEINTMPGFTPISMYPRMWQESGVEYQELVDLLIQ 375

Query: 295 DA 296
            A
Sbjct: 376 AA 377


>gi|254303966|ref|ZP_04971324.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
 gi|148324158|gb|EDK89408.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           polymorphum ATCC 10953]
          Length = 287

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 102/296 (34%), Positives = 159/296 (53%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG A   +L+  G+    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGAAVLESLKKQGYDTYGVILDEKNQVSAFVDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I   +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKNKTK------QIAQSVGIKTPKSYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + + +      + +IE Y+ G ELT 
Sbjct: 117 VEEIERFPVIIKPVDEGSSKGLFLCNNKEEAQEAVKKLA------KPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|332366050|gb|EGJ43806.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1059]
          Length = 353

 Score =  158 bits (400), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|225010883|ref|ZP_03701350.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
 gi|225004930|gb|EEG42885.1| D-alanine/D-alanine ligase [Flavobacteria bacterium MS024-3C]
          Length = 323

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 30/316 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           +AV+MGG +SE E+SL SG   A+ L+   ++V  I + +                  + 
Sbjct: 5   IAVIMGGYTSEFEISLKSGAVVAAHLDPDKYEVYPIVITKNRWTYTTDHGAVYAIQKENF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L H K   D  FN +HG+ GEDG +QA LELL IP T      +AL+ +K     V+
Sbjct: 65  SLELPHKKVLFDGVFNAIHGSPGEDGKIQAYLELLGIPQTACDFYQAALTYNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ +  S  +N     ++  I      P  +K  + GSS GI  +     I   L  
Sbjct: 125 KPYGIAMAKSYYLNFGDPINKEAIIKKVGLPCFVKANRSGSSYGISKVYTSDQIEAAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
             ++    +++IE  + G E++ GV+                   +    +     ST +
Sbjct: 183 EIAFKEDKEVIIESALVGREVSVGVIQYQGKTKVLPITEILSENDFFDYQAKYEGKSTEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA +  ++  ++  +A   +  +  +G +RS+F+   ++     LE+N  PGMT  SI 
Sbjct: 243 TPADLEPELEDKIIAVATFIYNTLNLKGFTRSEFIL--VNNVPHLLEVNTTPGMTQHSIL 300

Query: 275 PEMAAYAGYSFRELLL 290
           P+ A  AG S  EL  
Sbjct: 301 PQQAKEAGISLPELFE 316


>gi|238787931|ref|ZP_04631727.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
 gi|238723879|gb|EEQ15523.1| D-alanine--D-alanine ligase [Yersinia frederiksenii ATCC 33641]
          Length = 359

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/345 (24%), Positives = 145/345 (42%), Gaps = 55/345 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP---- 51
           + GG S+E EVSL S K    A++   F V+ + +D+            +L    P    
Sbjct: 2   VFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGQWHVNDASSYLLNAENPALIS 61

Query: 52  -------------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F ++HG  GEDG +Q +L +  IP+ 
Sbjct: 62  LNHSNRNVALIPGQASQQLITTDNASALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLK 134
            SG++ SA+SMDK  +K+++   G+ + P I        +         +  P  IKP  
Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRANQGHYSFEQVTAKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+  ++ +      +  +   +   ++L+E  + G E+ C VMG+     +    
Sbjct: 182 QGSSVGVSKVRNEAEYQRAVALAF--DFDHKVLVESAIVGREIECAVMGNDHPQASLCGE 239

Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  Y      +N      ++PA I  D+   ++ +A  A QA+ C G++R D    
Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDTDVSDRIRAVALAAFQALECCGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P    +   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 P-DNCIVINEINTLPGFTNISMYPKLWRATGVGSTELITRLIELA 343


>gi|168493572|ref|ZP_02717715.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
 gi|183576308|gb|EDT96836.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           pneumoniae CDC3059-06]
          Length = 347

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 95/334 (28%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 46  LAHLKPD---------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +   D               + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNETIDWDKQVAPSAIYEEGVVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDVTAKIAEVEEKLAYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR DF +     ++F  E+
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAIGGLGLSRCDFFYTDK-GEIFLNEL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+  L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMGISYPGLIERLVDLA 335


>gi|21911403|gb|AAC23582.2| D-alanine:D-alanine ligase-related protein [Streptomyces
           toyocaensis]
          Length = 346

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 140/342 (40%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E  VS+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   IGIVFGGRSEEHPVSIKSAREVARNLDLEKYEPFYIGITKSGAWKLCDGPDAEWEDGDCR 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVLSPDSDVHGLLVLEQGGCSTIRLDVVLPVLHGKLGEDGAMQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  VV + G+       V           + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYAVVRNAGIATPNFWTVAADETVDAARFTYPVFVKPARSGSSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +++ +   +  +    +  ++LIE+ V G E+ C ++G  +  V       +  + +   
Sbjct: 186 REEEMSSAVETAR--QYDSKVLIEEAVPGSEIGCAILGTGTDLVVGEVDRIALSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   +          ++PA IP      VQ  A   ++ +GCRGI+R D        +V 
Sbjct: 244 HQEDSPETGSENSIAIVPADIPEASRLRVQEEAKAVYRVLGCRGIARVDMFL-KEDGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             E+N  PG+T  S +P M A AG    E++   V  A   +
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGLPMSEVIDLTVSLALTGK 344


>gi|163786074|ref|ZP_02180522.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
 gi|159877934|gb|EDP71990.1| D-alanylalanine synthetase [Flavobacteriales bacterium ALC-1]
          Length = 317

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 141/321 (43%), Gaps = 30/321 (9%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE ++SL SG      L+   +   +I +                    D S+ +
Sbjct: 1   MGGYSSEYQISLKSGNVVYETLDKEKYNAFRIHIFKDKWVFVNDLDNEFPVDKNDFSIKV 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q   EL+ IP T   +  +AL+ +K      +   G
Sbjct: 61  NGVKITFDCVFNAIHGSPGEDGFMQGYFELIGIPQTSCNMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N     ++  I      P  +K  K GSS GI  + K + +   +  S   
Sbjct: 121 IKTAESYYLNLGDAINEGAIVAKVGLPCFVKANKAGSSFGISKVYKKEDLKAAINNSF-- 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAK 218
              ++++IEQ++DG+E++ GV+                   +          S  + PA+
Sbjct: 179 KEDNEIIIEQFLDGVEVSVGVISYRGETKVLPITEIVSENDFFDYAAKYEGKSQEITPAR 238

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  D  ++   +A   ++ +G  G SRS+F+F   + + + LE+N  PG+T  SI P+ A
Sbjct: 239 ISKDYEQKTVTVAKQVYEILGMTGFSRSEFIF--KNDEPYLLEMNTVPGLTKESILPQQA 296

Query: 279 AYAGYSFRELLLWMVEDASCL 299
           A AG +  +L    +E+A   
Sbjct: 297 AEAGINMSDLFDNAIEEALKN 317


>gi|318056533|ref|ZP_07975256.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actG]
 gi|318076094|ref|ZP_07983426.1| D-alanyl-alanine synthetase A [Streptomyces sp. SA3_actF]
          Length = 389

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 152/362 (41%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A   A++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAITDRA 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++                 
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +     +   + ++    H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFDGLDEAIAEAR--RHDPKFLIESLVQGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    ++Y         +++ ++PA +  +   EVQRLA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P+M   +G  + EL+  +++
Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379

Query: 295 DA 296
            A
Sbjct: 380 AA 381


>gi|326773651|ref|ZP_08232934.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
 gi|326636881|gb|EGE37784.1| D-alanine--D-alanine ligase [Actinomyces viscosus C505]
          Length = 378

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 143/365 (39%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 11  VAVVFGGRSGEHTISCATAAGVLSAIDRDRYEVLPVGITPEGQWLLVEDDPAALELSDNR 70

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 71  PPVTITAEGLGRGRLTAPLGGGELTVLGPTGPEILGRVDVVLPLLHGPYGEDGTIQGMLE 130

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ IPY   G+LASA  MDK  +K ++ + G+   P ++V                  ++
Sbjct: 131 MMGIPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHAWKRDPEAILEACRSLT 190

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 191 YPLFVKPARAGSSLGISKVDRPEDLAGAIEAARAV--DPKVLVESGIVGREVEVAVLQGR 248

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P                             V PA+I  +    +   A  A
Sbjct: 249 GDDAPRVAEPGEIAMDASQGAGEFYDYETKYLAHDAVAMVCPARIGPEARDLLMDTAARA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF       +    EIN  PG TP S++P M   +G  + EL+  ++E
Sbjct: 309 FEALGCEGLARVDFFLTDA-GEAVVNEINTMPGFTPFSMYPYMWQVSGLGYTELVSELIE 367

Query: 295 DASCL 299
            A   
Sbjct: 368 LAVAR 372


>gi|41409117|ref|NP_961953.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|254776254|ref|ZP_05217770.1| D-alanyl-alanine synthetase A [Mycobacterium avium subsp. avium
           ATCC 25291]
 gi|81413470|sp|Q73VJ4|DDL_MYCPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41397937|gb|AAS05567.1| DdlA [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 369

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 153/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    P         
Sbjct: 9   VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVVAIGITPQGSWVLTDGDPAALAISDRQ 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 69  LPEVTSASGTELALPADPGRSGQLVSLPPGASEVLASVDVVFPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  +PY  +G+ ASA  MDK  +K++ ++ G+P+    ++           +  +  P  
Sbjct: 129 LAGVPYVGAGVFASAAGMDKEFTKKLFAAEGLPIGDYAVLRPSQSTLSLQDRERLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +   +  +   +H  ++++E  + G EL CGV+       
Sbjct: 189 VKPARGGSSIGVSRVSSWDELDAAVAAAR--DHDPKVIVEAAIAGRELECGVLEMPDGTV 246

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  +I   V+ LA  A +A+ 
Sbjct: 247 QASTVGEIRVAGVRGREDSFYDFATKYLDDTAELDVPAKVDDEIADAVRELAIRAFKAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 307 CQGLARVDFFLTETG--PVLNEINTMPGFTTISMYPRMWAASGVDYPSLLATMVETALAR 364


>gi|224541777|ref|ZP_03682316.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525304|gb|EEF94409.1| hypothetical protein CATMIT_00949 [Catenibacterium mitsuokai DSM
           15897]
          Length = 342

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 77/335 (22%), Positives = 142/335 (42%), Gaps = 41/335 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------------LAH-- 48
           ++ GG S+E  VS  S        + + + +    + +                 L    
Sbjct: 5   LVCGGQSTEHAVSRMSCVNIYKNADKSKYDIKIAGITKEGEWYDLVSTDFSSDSWLEGAT 64

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                       D+ F VLHG FGEDG +Q +LE+ ++PY    ++AS  +MDK+ +K++
Sbjct: 65  KITDHFTFLKSFDVVFPVLHGQFGEDGTIQGLLEMAQVPYVGCRVMASCTAMDKIYAKKL 124

Query: 100 VSSCGVPVCPSILVNRFT------------------MDSQHLISPPYVIKPLKGGSSLGI 141
                +P  PS+ V +                    M+    +  P  +K  + GSS+G 
Sbjct: 125 FDQAHIPQVPSLYVKKRYDDKLVVVDDEGRESFNVEMEIYTHLGFPCFVKASRSGSSVGC 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             +     +   L ++++++    +        +E       D S       +P  +FY+
Sbjct: 185 YKVNSLTELLPRLHEAATYDRHVVVEKAINATELECAVIGNDDISASRVGQILPHGEFYT 244

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY    S   +PA++   I   +++ A  A +A+   G++R DF +D  +  V+  E
Sbjct: 245 YESKYEDEQSATCIPARVDQSIQDYIRQAAVKAFKAVDGTGLARCDFFYDNDTGNVYLNE 304

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN  PG T +S++P++   AG     L+  +++ A
Sbjct: 305 INTMPGFTNISMYPQLMKDAGLDTPALIDELIKLA 339


>gi|118468335|ref|YP_886735.1| D-alanyl-alanine synthetase A [Mycobacterium smegmatis str. MC2
           155]
 gi|6919860|sp|Q9ZGN0|DDL_MYCSM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198492|sp|A0QUZ7|DDL_MYCS2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4092035|gb|AAC99396.1| D-alanine:D-alanine ligase [Mycobacterium smegmatis]
 gi|118169622|gb|ABK70518.1| D-alanine--D-alanine ligase [Mycobacterium smegmatis str. MC2 155]
          Length = 373

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 99/360 (27%), Positives = 158/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V  I +      VL   +P         
Sbjct: 13  VAVVYGGRSSEHAISCVSAGSILRNLDPERFEVVAIGITPDGSWVLTDGRPETLAITDGK 72

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 73  LPAVTEASGTELALPAAPNRSGQLLALGNGPGEILAAVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYV 129
           L  +PY  SG+LASA  MDK  +K+++++ G+P+   +++           +  +  P  
Sbjct: 133 LAGVPYVGSGVLASAAGMDKEYTKKLLAAEGLPIGDQVVLRPGVETLDLEQRERLGLPVF 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +P  +  +    H  ++++E  V G EL CGV+       
Sbjct: 193 VKPARGGSSIGVSRVTAWDELPAAVALAR--RHDPKVIVEAAVIGRELECGVLEFPDGRL 250

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  D+  E+++LA  A  AIG
Sbjct: 251 EASTVGEIRVAGVRGREDGFYDFATKYLEDAAELDVPAKVDDDVADEIRQLAVRAFTAIG 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A  G  +  LL  MV+ A   
Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAAGGIDYPTLLAAMVDTAIAR 368


>gi|302522120|ref|ZP_07274462.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
 gi|302431015|gb|EFL02831.1| D-alanylalanine synthetase [Streptomyces sp. SPB78]
          Length = 389

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 95/362 (26%), Positives = 152/362 (41%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A   A++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGAIDREKYDVLPIGITGEGRWALAVDEPARMAIADRA 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++                 
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +     +   + ++    H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFDGLDEAIAEAR--RHDPKFLIEALVQGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    ++Y         +++ ++PA +  +   EVQRLA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P+M   +G  + EL+  +++
Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379

Query: 295 DA 296
            A
Sbjct: 380 AA 381


>gi|269976776|ref|ZP_06183751.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
 gi|269934973|gb|EEZ91532.1| D-alanine--D-alanine ligase [Mobiluncus mulieris 28-1]
          Length = 374

 Score =  158 bits (400), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +            
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDFG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++ +    H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236
                   A+P               S +         +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAIPGEVVMKQTPGMYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|297569924|ref|YP_003691268.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
 gi|296925839|gb|ADH86649.1| D-alanine/D-alanine ligase [Desulfurivibrio alkaliphilus AHT2]
          Length = 315

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 102/294 (34%), Positives = 160/294 (54%), Gaps = 13/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S EREVSL+  +    A+    + V + D    +  ++A   + D+AF +LH
Sbjct: 9   VALLAGGKSGEREVSLAGAREVEKAINTERYDVRRYDPATDLARLVADAPQLDVAFILLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNR 115
           G  GEDG +Q +L+LLEIPY  SG+L SAL+MDK  +KQ+    G+ V    +       
Sbjct: 69  GPLGEDGSIQGLLDLLEIPYQGSGVLGSALAMDKDLAKQLYRHAGLLVPAWEMAGSADLD 128

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P V+KP++ GSSLG+ ++ +   +   L  +   +  DQ+++E+++ G 
Sbjct: 129 DPARLLQSLKLPLVVKPVRQGSSLGMSLVDQPAELVPALKLAF--DFDDQVMVEEFIAGR 186

Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           ELT       D +       +P  +  F+ Y+ KY +  +  + PA++P ++  EVQR A
Sbjct: 187 ELTGGVLGNADLTPLPVVEIIPGKEYRFFDYQAKYQAGATREICPAQLPAEVTAEVQRCA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            LAHQA+  RG SR+D +       ++ LE N  PGMTP S+ P+ AA  G SF
Sbjct: 247 CLAHQALNLRGYSRTDMILAE--GGLYVLETNTIPGMTPTSLLPQAAATHGLSF 298


>gi|311740529|ref|ZP_07714356.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
 gi|311304049|gb|EFQ80125.1| D-alanine-D-alanine ligase [Corynebacterium pseudogenitalium ATCC
           33035]
          Length = 353

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 158/351 (45%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S+E  VS  S  A  + L+   F+V  I + R                    
Sbjct: 7   VAVIYGGRSTEHSVSCVSAGAIMNHLDPEKFEVVPIGITREGTWTPGTTEGLEIVDGVMP 66

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+ F +LHG FGEDG VQ + EL  +PY
Sbjct: 67  EVSPGAELTLSLDPNAKGQFHNVTDGTLFAEVDVVFPILHGPFGEDGTVQGLFELSGLPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
              G+LAS++ MDK  +K+V+++  +PV P ++       + D +  +  P  +KP +GG
Sbjct: 127 VGPGVLASSVGMDKEFTKKVLAAADLPVAPEVILKGRTELSEDEKQQLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +   +  P  +  +      +++L+E  + G E+  GV+  A   +       
Sbjct: 187 SSIGVSKVTTWEEFPAAVDLALED--DEKILVEPEIVGKEVEIGVLHYADGTLLASVPAL 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA    ++ ++++ +A  A +A+ C G+SR DF
Sbjct: 245 LAGIDDSDEGFYGFDTKYLDNVVTAEIPAPFAPELTEKLRDMAIRAFEALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S  V+  EIN  PG TP+S++P++ A +G  +  LL  ++E A   
Sbjct: 305 FVTKDS--VYINEINTLPGFTPISMYPQVLAASGVEYPALLEALIEQALAK 353


>gi|254450575|ref|ZP_05064012.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
 gi|198264981|gb|EDY89251.1| D-alanine--D-alanine ligase [Octadecabacter antarcticus 238]
          Length = 270

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 119/276 (43%), Positives = 168/276 (60%), Gaps = 9/276 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
             AGF V +ID    +   L   KPD  FN LHG + EDG+VQ +LE L IPYTHSG+LA
Sbjct: 2   RTAGFDVVEIDAGVDLVERLKLAKPDAVFNALHGRWCEDGVVQGVLEWLRIPYTHSGVLA 61

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA +MDK ++K +  + G+P   S+L ++  +++ H++ PPYV+KP   GSS+GI ++ +
Sbjct: 62  SATAMDKQKTKDIYRAHGLPFVESVLASKSQIEAAHVLPPPYVVKPYDEGSSVGIYMVME 121

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             S       + + +  D +++E Y  G ELT  V+G  +L VT+I V    +Y Y  KY
Sbjct: 122 GDS-----PPTLAADLPDLMMVETYAPGRELTTAVLGTRALTVTDIVV--DGWYDYASKY 174

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINV 264
               S HV+PA +P DI++     A  AH A+GCRG+SR+D+ +D       +  LE N 
Sbjct: 175 EVDGSIHVIPANLPDDIFQACMDYAVRAHDALGCRGLSRTDYRWDESRGLDGLILLETNT 234

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           QPGMTP S+ PE AA  G SF +L+ WM+EDASC R
Sbjct: 235 QPGMTPTSLAPEQAASCGISFPDLMTWMIEDASCNR 270


>gi|315445128|ref|YP_004078007.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
 gi|315263431|gb|ADU00173.1| D-alanine--D-alanine ligase [Mycobacterium sp. Spyr1]
          Length = 367

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 159/360 (44%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V+ + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPDRFEVTAVGITPEGSWVLTEGRPETLAITDGK 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVTGDSGTALTLTADPARRGQLVSLGEAAGEVLASADVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++++S G+PV   +      +  ++  +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLASAGLPVGDHVVLRARDSTLSLQDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+G+  +     +P  +  +    H  +++IE  V G EL CGV+      +
Sbjct: 187 VKPSRGGSSIGVSRVTAWDELPAAIELAR--RHDPKVIIEAAVPGRELECGVLEFPDGHL 244

Query: 190 TEI----------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                           +  FY +E KY    +   +PAK+  D+ + ++ L+  A  AI 
Sbjct: 245 EASTLGEIRVEGVRGREDGFYDFETKYLDDGAELDVPAKVDDDVAEAIRALSLRAFTAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  ++ LL  MVE A   
Sbjct: 305 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYQTLLATMVETALAR 362


>gi|13471742|ref|NP_103309.1| D-alanyl-alanine synthetase A [Mesorhizobium loti MAFF303099]
 gi|39931184|sp|Q98JS0|DDLA_RHILO RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|14022486|dbj|BAB49095.1| D-alanine-D-alanine ligase A [Mesorhizobium loti MAFF303099]
          Length = 357

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 82/350 (23%), Positives = 141/350 (40%), Gaps = 54/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG S+E +VS  S      A++   ++V  I + R     L              
Sbjct: 7   VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWRLQPSSEAGADGAGAQ 66

Query: 49  ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F VLHG FGEDG VQ   E+ ++ Y 
Sbjct: 67  VPEDGVEVALLPGGKGRLVALTKNGEQPDPVDVVFPVLHGPFGEDGSVQGYAEVADVAYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGG 136
             GILASA +MDK  +K+++   G+ V  S+           +    +  P+  KP + G
Sbjct: 127 GCGILASAAAMDKDVAKRLLREAGLAVARSVTVLKGDVGSFQEIAGALGLPFFAKPARQG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDV 189
           SS G+  +         +  +    +  + LIE++VDG E+ C V+         +    
Sbjct: 187 SSFGVSKVHDRDGFEQAVETAL--RYDSKALIEEFVDGREIECSVLERADGSLTVSPPGE 244

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              A     +      + +  +   +PA +P D+      +A  A +A+GC  ++R DF 
Sbjct: 245 IIPADKHGFYTYEAKYFDAEGAVVKVPADVPADVVARTSEMAARAFRALGCEAMARVDFF 304

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +   E+N  PG T +S++ +  A AG  + +++  ++E A   
Sbjct: 305 L-RADGSLLVNEVNTLPGFTDISMYAKALAAAGIGYSKVIDVLIEHALAR 353


>gi|256424912|ref|YP_003125565.1| D-alanyl-alanine synthetase A [Chitinophaga pinensis DSM 2588]
 gi|256039820|gb|ACU63364.1| D-alanine/D-alanine ligase [Chitinophaga pinensis DSM 2588]
          Length = 329

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 94/328 (28%), Positives = 154/328 (46%), Gaps = 32/328 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           +A++ GG S E  +S+ S       L+ + + V +I V R                    
Sbjct: 5   IALVAGGYSGEYVISVQSAAVIEKHLDSSKYNVYKISVTRDGWNYTGSDGQLIAVDRNDF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L +   K   D  F  +HG  GEDG +Q   E+L IP+T  G++ SAL+ +K    +VV
Sbjct: 65  TLTINGNKVIFDAVFIGIHGTPGEDGRLQGYFEMLGIPFTSCGMVTSALTFNKSYCNKVV 124

Query: 101 SSCGVPV-----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S GV                       +  P  +KP +GGSS+G+  +   + +   + 
Sbjct: 125 ASLGVVNVSKSVHIFKDQPFDIQAILQELKLPVFVKPAEGGSSIGMSKVNTAEELAPAIE 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212
           ++   N   Q+LIE++V G E+TCG+               +   +F+ YE KY+   S 
Sbjct: 185 KAF--NEDVQILIEEFVKGREITCGLYRSNGAFTVLPVTEIISSKEFFDYEAKYTPGVSR 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA+ P +I  ++Q  A   +  + CRGI R DF+++  S ++F+LE+N  PG +  S
Sbjct: 243 EVTPAEAPNEIVNQIQETAKKLYNKLNCRGIVRMDFIWEEASNRLFFLEVNTMPGQSENS 302

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCLR 300
           I P+    AG + +E    ++E+  CLR
Sbjct: 303 IVPQQVRAAGKTLQEFYGTLIEE--CLR 328


>gi|294783649|ref|ZP_06748973.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
 gi|294480527|gb|EFG28304.1| D-alanine--D-alanine ligase [Fusobacterium sp. 1_1_41FAA]
          Length = 287

 Score =  158 bits (400), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++K       +     I V +   D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAENIGIRVPKSYRD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKL------RKPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|328949926|ref|YP_004367261.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
 gi|328450250|gb|AEB11151.1| D-alanine--D-alanine ligase [Marinithermus hydrothermalis DSM
           14884]
          Length = 324

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 93/321 (28%), Positives = 162/321 (50%), Gaps = 33/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           ++ GG S E EVSL+S +    A+           + +    +                 
Sbjct: 8   LIAGGRSGEHEVSLASARGVLEAMP---HPTDLAVIAKDGRWLTGTAARAALEAGRAQRG 64

Query: 46  -------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                  L+  + D+AF +LHG +GEDG +Q  LE+L +PY  +G+ A+AL MDK  +K+
Sbjct: 65  EHPFPPPLSWHRYDVAFPLLHGRWGEDGTIQGFLEMLGLPYVGAGVGAAALCMDKELTKR 124

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            ++  G+PV P + + R     +   SPPY +KP   GSS+GI  ++  +++   L ++ 
Sbjct: 125 TLAHAGIPVVPWVSLWRGEGLPELPFSPPYFVKPANTGSSVGISKVRTREALGPALEEAF 184

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            W   D++L+EQ ++G+   E+       A   V      +S+FY Y  KY+   +  ++
Sbjct: 185 RW--DDRVLVEQGLEGVRELEVALLGNVTAEASVVGEVRYQSEFYDYATKYTPGRAELLI 242

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +  D+ + +Q +A  A++ +G RG++R DF   P    ++  E+N  PG TP S++P
Sbjct: 243 PAPVDADVARRLQEVARTAYRLLGVRGLARVDFFLAP-DGALYLNELNTMPGFTPTSMYP 301

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++   +G  +  LL  +V  A
Sbjct: 302 KLWQASGLEYEALLERLVRLA 322


>gi|320533338|ref|ZP_08034032.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134453|gb|EFW26707.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 388

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 145/365 (39%), Gaps = 69/365 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E  +S ++     SA++   ++V  + +      +L    P         
Sbjct: 21  VAVVFGGRSGEHTISCATAAGVLSAIDRDHYEVLPVGITPEGQWLLVEDDPAALELSDSR 80

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG +GEDG +Q +LE
Sbjct: 81  PPVTITADGLGRGTLTAPLGGGELTVLGPTGPQVLGRVDVVLPLLHGPYGEDGTIQGMLE 140

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           ++ +PY   G+LASA  MDK  +K ++ + G+   P ++V   T              ++
Sbjct: 141 MMGLPYVGCGVLASAAGMDKQVTKVLLGAAGIATAPHVVVGPHTWKRDPEAILEACRSLT 200

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSSLGI  + + + +   +  + +     ++L+E  + G E+   V+   
Sbjct: 201 YPLFVKPARAGSSLGISKVDRPEDLRQAIEAARAV--DPKVLVESGIVGREVEVAVLQGR 258

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST-----------HVLPAKIPLDIYKEVQRLAFLA 234
             D   +A P                             V PA+I  +    +   A  A
Sbjct: 259 DDDAPRVAEPGEIAMDASQGAGEFYDYDTKYLAHDAVAMVCPARIGPEARALIMDTAARA 318

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G++R DF     S +    EIN  PG TP S++P M   +G  +  L+  ++E
Sbjct: 319 FEAVGCEGLARVDFFLT-DSGEAVVNEINTMPGFTPFSMYPYMWQVSGLDYTALVSELIE 377

Query: 295 DASCL 299
            A+  
Sbjct: 378 LAAAR 382


>gi|15420572|gb|AAK97387.1|AF363615_1 D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 343

 Score =  158 bits (399), Expect = 8e-37,   Method: Composition-based stats.
 Identities = 94/342 (27%), Positives = 154/342 (45%), Gaps = 53/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S ER+VSLSSG   A ALE+ G +   +D+                      
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFESAYSIQKQEENP 62

Query: 39  --------DRSVGLVLAH----------------LKPDLAFNVLHGNFGEDGLVQAILEL 74
                   +  +  ++                  L  D  F  LHG  GE+G +QA  ++
Sbjct: 63  YDYFVVENEPDIEKLIQKNSNQKNLIGKNVVELCLNADFCFIALHGGIGENGKLQAFFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P     L  +           P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQLWEQGQEVYYST---PCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L ++    +  +++IEQ ++G E + GV+GD  L      +
Sbjct: 180 NGSSIGVEIVENKEQFFKALKKAE--KYNSKVMIEQKIEGREFSVGVLGDNVLPAI-EII 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++     
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTKEL 296

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++ +E N  PGMTP S+ P+ A   G SF EL   +VE +
Sbjct: 297 D-IYCIEANSLPGMTPTSLLPQEAEAIGISFSELCETIVELS 337


>gi|226365967|ref|YP_002783750.1| D-alanyl-alanine synthetase A [Rhodococcus opacus B4]
 gi|254767736|sp|C1B2N8|DDL_RHOOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226244457|dbj|BAH54805.1| D-alanine--D-alanine ligase [Rhodococcus opacus B4]
          Length = 368

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPESLSIRGRS 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+P+   +++   T     + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQRSRLHLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+GI  + +  ++   +  +    H  ++++E  + G E+ CGV+     DV
Sbjct: 188 VKPARGGSSIGITRVAEWAALDDAIAHAR--RHDPKVIVESGIAGREVECGVLEFPDGDV 245

Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               + +             Y ++ KY        +PAK+   +  E++ LA  A  A+ 
Sbjct: 246 RASVIAEIRMPEGADDDEAFYDFDSKYLDDVCEFDVPAKLEDSVSDEIRALAVRAFSALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M    G  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWDAVGVDYGTLVSTLVDTALAR 363


>gi|254392473|ref|ZP_05007653.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294815338|ref|ZP_06773981.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326443692|ref|ZP_08218426.1| D-alanyl-alanine synthetase A [Streptomyces clavuligerus ATCC
           27064]
 gi|197706140|gb|EDY51952.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294327937|gb|EFG09580.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 390

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/362 (24%), Positives = 151/362 (41%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG SSE E+S+ +  A   A++ + + V  I +       L   +PD        
Sbjct: 24  VAVVFGGRSSEHEISVVTAGAVLRAIDRSVYDVLPIGITVDGRWALTADEPDRMAITDRR 83

Query: 53  ------------------------------------------LAFNVLHGNFGEDGLVQA 70
                                                     + F VLHG +GEDG +Q 
Sbjct: 84  LPSVDQLAESTEGDVVLSVHPGSREVVYTEPGSVPKALGEVDVVFPVLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122
           +LEL  +PY  +G+L+SA+  DK   K+V +S G+PV P  ++     +           
Sbjct: 144 LLELAGVPYVGAGVLSSAVGQDKEYMKRVFTSFGLPVGPYTVIRPREWEQDASAARKKIV 203

Query: 123 ----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P  +KP + GSS+GI  +     +   + ++    H  ++L+E  + G E+ 
Sbjct: 204 DFTGDHGWPVFVKPARAGSSIGITKVDDLSGLDEAIEEAR--RHDPKILVEALLRGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         +++ ++PA +  +   EV+RLA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQSHDFYDFEAKYIDSASGIVPAPLTEEQTAEVRRLAVAA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A  C G+ R+DF       +    EIN  PG TP+S++P M    G  + EL+  +++
Sbjct: 322 FDAASCEGLVRADFFLTE-DGEFVINEINTMPGFTPISMYPRMWQETGVGYAELVDRLIQ 380

Query: 295 DA 296
            A
Sbjct: 381 AA 382


>gi|317495356|ref|ZP_07953726.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
 gi|316914778|gb|EFV36254.1| D-alanine-D-alanine ligase [Gemella moribillum M424]
          Length = 355

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 89/339 (26%), Positives = 153/339 (45%), Gaps = 46/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG S+E  VSL + K+  +A+    + V  I                        
Sbjct: 6   IGIIYGGKSAEHSVSLLTAKSIINAINKEKYNVFPIFISLNGEWARGEKITSEIKDHKEL 65

Query: 37  -----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                D D S  L   + K D+ F VLHG  GEDG +Q +LE+++I Y  + +L+SA  M
Sbjct: 66  IFSNFDNDISGLLFEDNHKFDIVFPVLHGPNGEDGTIQGLLEIMDIAYVGNNVLSSAAGM 125

Query: 92  DKMRSKQVV---------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           DK+  KQ+           +  +        N+   +    +  P  +KP   GSS+GI 
Sbjct: 126 DKVIMKQLFAAYDLPQLPYTHFIEYNWKKNKNKIIKEINDNLKYPVFVKPANLGSSVGIS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIA----VPKS 197
               ++ +   + ++       ++++EQ   G  E+   V+G   +  T+      +  +
Sbjct: 186 RCNDEKQLIKGIEEAL--KFDKKIVVEQGAVGAKEIEVAVLGYNEVRTTDPGEIVNISTT 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +FY YE KY+   S   +PA I   +Y E + +A  A +AI   G+ R+DF +     K+
Sbjct: 244 EFYDYETKYTDGQSRMDIPAPIDTALYSEFREMAETAFRAISGSGLVRADFFYTKE-GKI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  E+N  PG TP S+FP + A    ++ E++  + + A
Sbjct: 303 FINEVNTMPGFTPFSMFPSLWANMNVTYPEIIEELFDLA 341


>gi|161779899|gb|ABX79441.1| VanC1 [Enterococcus gallinarum]
          Length = 343

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------L 46
           +AVL GG S E  VSL+S ++   A+    ++V  I +  ++                 L
Sbjct: 4   IAVLFGGNSPEYSVSLTSAESVIQAINPLKYEVMTIGIAPTMDWYWYQGNLANVRNDTWL 63

Query: 47  AHLK--------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              K                    PD+ F VLHG +GEDG +Q +LEL+ +PY    + A
Sbjct: 64  EDHKNCHQLTFSSQGFILGEKRIVPDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAA 123

Query: 87  SALSMDKMRSKQVVSSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           SAL M+K    Q+  + G+                           P  IKP + GSS G
Sbjct: 124 SALCMNKWLLHQLADTMGIASAPTLLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKG 183

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  +    ++   L  ++++ +G  +LI++ + GIE+ CG+      ++   +       
Sbjct: 184 ITKVTDKTALQSAL--TTAFAYGSTVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDG 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY  +++T  +PA +PL +  +++  A L ++ +G  G++R DF        ++
Sbjct: 242 FFDFEEKYQLISATITVPAPLPLALESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIY 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T  S +P M A  G S+  L+  ++  A
Sbjct: 301 LNEINTMPGFTGHSRYPAMMAEVGLSYEILVEQLIALA 338


>gi|120403135|ref|YP_952964.1| D-alanyl-alanine synthetase A [Mycobacterium vanbaalenii PYR-1]
 gi|190359169|sp|A1T708|DDL_MYCVP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119955953|gb|ABM12958.1| D-alanine--D-alanine ligase [Mycobacterium vanbaalenii PYR-1]
          Length = 367

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 98/360 (27%), Positives = 157/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +    L+   F+V  + +      VL   +P         
Sbjct: 7   VAVVYGGRSSEHAISCVSAGSILRNLDPQRFEVVPVGITPEGSWVLTDGRPETLAITDGA 66

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 67  LPGVSGSSGTELALAADPGRRGQLLSLGDAAGDVLAAVDVVFPVLHGPYGEDGTIQGLLE 126

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K+++++ G+PV   +++           +  +  P  
Sbjct: 127 LAGVPYVGAGVLASAAGMDKEFTKKLLTAAGLPVGDHVVLRPREATVSLEDRERLGLPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD- 188
           +KP +GGSS+G+  +    ++P  +  +    H  ++++E  + G EL CGV+       
Sbjct: 187 VKPSRGGSSIGVSRVTAWDALPAAIELAR--RHDPKVIVEAAIPGRELECGVLEFPDGHL 244

Query: 189 ---------VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                    V  +   +  FY +E KY    +   +PAK+   I + V+ LA  A  AI 
Sbjct: 245 EASTVGEIRVAGVRGREDGFYDFETKYLDDGAELDVPAKVDDAIAEAVRGLAIRAFDAID 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 305 CQGLARVDFFLTDAG--PVINEINTMPGFTTISMYPRMWAASGIDYPTLLATMVETAIAR 362


>gi|325298578|ref|YP_004258495.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
 gi|324318131|gb|ADY36022.1| D-alanine--D-alanine ligase [Bacteroides salanitronis DSM 18170]
          Length = 326

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 96/321 (29%), Positives = 149/321 (46%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ S +   S ++   +KV  I++                    D 
Sbjct: 5   IAIVAGGDSSEHDVSMKSAEGIYSFIDKEIYKVYVIELSHKGWNAILEDGSKSTVDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+ +K  + Q +
Sbjct: 65  SFMENGQKIKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFNKFMTNQYL 124

Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV +  S+LV+        +    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KSFGVRIAESMLVHKRNGISDEEVIEKIGLPCFIKPNASGSSFGVTKVKTKEQIQPALQA 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214
           +      D  +IE Y+DGIEL  G     +  V            +       +   T +
Sbjct: 185 AF--AESDDAMIEAYMDGIELANGCYKTRNKSVVLPITEVVSKNEFFDFNAKYNGQVTEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++   VQ+L    +  +GCRGI R D++      K+  LEIN  PGMT  S  
Sbjct: 243 TPARLSPELTGRVQKLTSAIYDILGCRGIVRVDYIITE-GEKINLLEINATPGMTSTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+ A  AG   +E++  ++ED
Sbjct: 302 PQQARAAGIDMKEIMTDIIED 322


>gi|323339467|ref|ZP_08079746.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
 gi|323093081|gb|EFZ35674.1| D-alanine-D-alanine ligase A [Lactobacillus ruminis ATCC 25644]
          Length = 382

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 87/344 (25%), Positives = 155/344 (45%), Gaps = 50/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      AL+   ++VS                          
Sbjct: 8   IALLFGGNSSEHDVSKRSAHTVFDALDKDKYEVSVFMFTKQGFLLGNKDSMRIFDGEPED 67

Query: 37  --------DVDRSVGLV----LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                   DVD S  L     L+ +K  DL   V+HGN GEDG VQ++  LL  PY  SG
Sbjct: 68  AVVAEAIKDVDFSNPLANIQSLSEVKDIDLFIPVIHGNMGEDGTVQSLFRLLNKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I +SA+S DK  +KQ+++  G+     +                  +     +KP + GS
Sbjct: 128 IASSAVSFDKDLTKQLLTYHGIRNTKYVVVTPENQSEYTYEKCAAELGETLFVKPARQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV-----TEI 192
           S+GI  +   +     +     ++    L+ E   +  E+ C V+G+  +         +
Sbjct: 188 SVGIYKVSNKEEFDKAIQDGFHYDF-KILVEETIANPREVECSVLGNRDIKASKLGAIRV 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               + +        +      +P ++P ++ KE+Q+++  A + +G RG++R DFL D 
Sbjct: 247 PAEDAFYDYNNKFVDASGVVFEIPVELPENLTKEIQQMSLDAFRVLGNRGLARMDFLVDE 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   ++ E+N  PG T +S++P++ A +G ++++LL  +++ A
Sbjct: 307 -NDVPYFGEVNTLPGFTNISLYPQLWAVSGINYKDLLDRLIQLA 349


>gi|295115202|emb|CBL36049.1| D-alanine--D-alanine ligase [butyrate-producing bacterium SM4/1]
          Length = 368

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VGAVFSPDATEKCVLIERERGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V       
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|295092630|emb|CBK78737.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 368

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VGAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKHFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V       
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVIASGVGE 259

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|295131866|ref|YP_003582529.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376332|gb|ADE00187.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771089|gb|EFS37055.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313811746|gb|EFS49460.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313832280|gb|EFS69994.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|313832740|gb|EFS70454.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
 gi|314975178|gb|EFT19273.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314977587|gb|EFT21682.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314985065|gb|EFT29157.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315096927|gb|EFT68903.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327332479|gb|EGE74214.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA2]
 gi|327446745|gb|EGE93399.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|327448814|gb|EGE95468.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|328759876|gb|EGF73466.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL099PA1]
          Length = 315

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 140/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  +   V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASHAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|111023466|ref|YP_706438.1| D-alanyl-alanine synthetase A [Rhodococcus jostii RHA1]
 gi|123339682|sp|Q0S2F6|DDL_RHOSR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110822996|gb|ABG98280.1| D-alanine--D-alanine ligase [Rhodococcus jostii RHA1]
          Length = 368

 Score =  158 bits (399), Expect = 9e-37,   Method: Composition-based stats.
 Identities = 90/360 (25%), Positives = 154/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +    L+   ++V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLRNLDPERYEVVPIGITTEGSWVLGSTDPETLSIRGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDADGSALALTADPTRSGDLVALDDGEAGKILASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+P+   +++   T     + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPIGFQVVLRPGTATLTDEQKSRLHLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+GI  + +  ++   +  +    H  ++++E  + G E+ CGV+     DV
Sbjct: 188 VKPARGGSSIGITRVAEWAALDDAIAHAR--LHDPKVIVESGIIGREVECGVLEFPDGDV 245

Query: 190 TEIAVPKSDF----------YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
               + +             Y ++ KY        +PAK+   +  E++ LA  A  A+ 
Sbjct: 246 RASVIAEIRMPEGAGDDEAFYDFDSKYLDDVCEFDVPAKLDESVSDEIRELAVRAFSALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M    G  +  L+  +V+ A   
Sbjct: 306 CQGLARVDFFVTEDG--PVINEINTMPGFTSISMYPRMWGAVGVDYGTLVSTLVDTALAR 363


>gi|159903895|ref|YP_001551239.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
 gi|159889071|gb|ABX09285.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9211]
          Length = 353

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 100/346 (28%), Positives = 155/346 (44%), Gaps = 52/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAH-------- 48
           + V+ GG+S E  VS+ S     +AL+       F+V  + +D     +  +        
Sbjct: 8   VCVIFGGVSGEHNVSIQSAITVVNALKQGENANRFEVISLYIDSQGRWMNNNVAKEVLSN 67

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG +Q +L+L   P+  SG
Sbjct: 68  GRKPSTNETPENLSSQGFRYFPEDIEEIDVWFPVLHGPNGEDGTIQGLLKLTGKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL-----------VNRFTMDSQHLISPPYVIKP 132
           +L SAL MDK+  K   +S  +P                  + F    +  +  P  IKP
Sbjct: 128 VLGSALGMDKIAMKIAFASANLPQVKYFSINKNELINPHAHSLFIKRIEAKLGYPCFIKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVT 190
              GSS+GI      Q +   L  ++  NH  +++IE+ V G EL CGV           
Sbjct: 188 ANLGSSVGITKAYNKQQLIEGLNIAA--NHDPRIVIEESVTGRELECGVLGKEKMIASTV 245

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                +SD+Y Y+ KYS ++S  ++PA I  +I K++Q L+ LA +AI   GI+R DF +
Sbjct: 246 GEVKHQSDWYDYQAKYSGVSSEVLIPAPISEEISKKIQELSLLACKAISVEGIARVDFFY 305

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +  V   EIN  PG T  S++P +   +G +  +L+  +VE A
Sbjct: 306 KEDTNHVLINEINTLPGFTMQSMYPMLWNQSGLNIEKLVAILVETA 351


>gi|311898521|dbj|BAJ30929.1| putative D-alanine--D-alanine ligase [Kitasatospora setae KM-6054]
          Length = 380

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/364 (23%), Positives = 149/364 (40%), Gaps = 69/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS+ +  +   +++ A ++V  I +       L   +P         
Sbjct: 16  VAIVFGGRSSEHGVSVVTAASVLRSIDRAKYEVLPIGITHEGRWALVGDEPSRMAITDGR 75

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+   +LHG +GEDG +Q 
Sbjct: 76  MPDVDQVAESTEGQVTLPAAPGNREVVWSEPGAAPKVLGEVDVVLPLLHGPWGEDGTLQG 135

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----------VCPSILVNRFTMDS 120
           +LEL  +PY  SG+LASA+ MDK  +K+++ S G+              S        + 
Sbjct: 136 LLELSGVPYVGSGVLASAVGMDKEFTKRIIESLGLYAGEYTVLKPREWESEAGRAAARER 195

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  +K    +   + ++    H  ++++E+ V+G E+ CG
Sbjct: 196 IAALGLPLFVKPCRAGSSIGITKVKDLADLDAAVEEAR--RHDPKVIVEKGVEGREIECG 253

Query: 181 VMGDASLDVTEIAVPKSDFYSY----ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           V+         +         +           +S   +PA++      E++R A     
Sbjct: 254 VLEFEDGPRASVPAEVLVDGDFEFYDFEAKYIDSSEVRIPAELTAAEQAEIRRQAVEVFD 313

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GC G++R DF       +    E+N  PG TP+S +P+M    G  + EL+  ++  A
Sbjct: 314 GLGCEGLARVDFFLLA-DGRWMVNEVNTMPGFTPISAYPKMWEATGVPYAELIDRLL--A 370

Query: 297 SCLR 300
           + LR
Sbjct: 371 AALR 374


>gi|237739358|ref|ZP_04569839.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
 gi|229422966|gb|EEO38013.1| D-alanine-D-alanine ligase [Fusobacterium sp. 2_1_31]
          Length = 287

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 160/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLRSGEAVLESLQRQGYDAYGVVLDENNQVTAFLENDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++K       +     I V +   D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAESIGIRVPKSYRD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LDSIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKL------RKPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAERIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|300858333|ref|YP_003783316.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300685787|gb|ADK28709.1| D-alanine-D-alanine ligase [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302206051|gb|ADL10393.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           C231]
 gi|302330602|gb|ADL20796.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           1002]
 gi|308276287|gb|ADO26186.1| D-alanyl-alanine synthetase A [Corynebacterium pseudotuberculosis
           I19]
          Length = 363

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 153/349 (43%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG SSE  VS  S  A  S L+   ++V  + + R     +              
Sbjct: 16  VAVVYGGQSSEHSVSCVSAGAIMSHLDPQKYEVFPVGITRDGVWTVGESDATKLRTVDRV 75

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                          + D+ F  LHG FGEDG +Q + EL  IP
Sbjct: 76  MPEVEFVREVKLSVNPRSAGEFRYEDGTLYAQADVIFPALHGRFGEDGTIQGMFELSGIP 135

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++          + ++  P  +KP +G
Sbjct: 136 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGDETLTESDKQMLGLPVFVKPARG 195

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  + +       L  +    H  ++++E  + G+E+ CGV+  A   +      
Sbjct: 196 GSSIGISRVIEWDDFDAALTLAR--EHDTKVIVEAEIKGVEVECGVLERADGSLIASVPA 253

Query: 196 K--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +          FY ++ KY     T  +PA         +Q L+  A QA+ CRG+SR D
Sbjct: 254 QLEDVDEGEEGFYGFDTKYLDNIVTATIPAPFDQQTIALIQSLSLEAFQALNCRGLSRVD 313

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            E+N  PG TP+S++P++    G  + ELL  +++ A
Sbjct: 314 FFVTDQG--PVLNEVNTMPGFTPISMYPQVFEATGIGYAELLSHLIDQA 360


>gi|160915858|ref|ZP_02078066.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
 gi|158432334|gb|EDP10623.1| hypothetical protein EUBDOL_01880 [Eubacterium dolichum DSM 3991]
          Length = 354

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 89/347 (25%), Positives = 146/347 (42%), Gaps = 53/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV+ GG SSE  VSL S  +    L    + +  + + +     +               
Sbjct: 7   AVIFGGQSSEYAVSLHSAGSLIRKLHKERYDLLLVGITKDGKWYIYDGDVESIEHDTWLQ 66

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        +  D  F VLHG  GEDG +Q + EL  IPY
Sbjct: 67  DASTCPCVLSCSTANHGFLKLCSDGSYEEIPVDCIFPVLHGKNGEDGTIQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131
              G ++S++ MDK  +  V+ +  VP  P + V               +  +  P  IK
Sbjct: 127 VGCGHMSSSICMDKEMTHIVLENAKVPCAPYLCVYEEKDMDYEAVYQEAKAKLGLPIFIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189
           P   GSS GI  +   +     L  +   +   ++++E  ++G E+ C VMG+  L    
Sbjct: 187 PANAGSSYGISKLDSFEGFEAALKDAFYHDGKGKVILETTIEGFEIGCAVMGNRELFAGN 246

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +       F+ YE KY  ++S    PA+I  ++ +E + LA  A++A+ C+G++R D  
Sbjct: 247 VDEIETSLPFFDYEGKYQMVDSHIYCPARISKELIEEARTLALRAYKALNCKGMTRVDMF 306

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P   ++   E+N  PG T  S +P M   AG +F +L+  +V+ A
Sbjct: 307 KTP-DDQILINEVNTIPGFTDTSRYPTMMKEAGIAFSDLIDRLVDLA 352


>gi|320546374|ref|ZP_08040690.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
 gi|320448984|gb|EFW89711.1| D-alanine-D-alanine ligase [Streptococcus equinus ATCC 9812]
          Length = 348

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+EREVS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITKSGDFIKTQEFSSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNDTVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+   +             +    ++ P  +KP   GSS+GI   +
Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKTVAEVNEKLTYPVFVKPANMGSSVGISKAE 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + ++   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 GEAALRTAIDFALKYDSRILIETGVNAREIEVGILGNADVKTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I  DI +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSDIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYTDLVEKLVELA 336


>gi|291087283|ref|ZP_06571884.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
 gi|291075677|gb|EFE13041.1| D-alanine--D-alanine ligase A [Clostridium sp. M62/1]
          Length = 368

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 90/343 (26%), Positives = 150/343 (43%), Gaps = 53/343 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG SSE  VS  S     + ++   + V  + +      +                 
Sbjct: 22  VVFGGQSSEHIVSCMSAVNVINHIDREKYDVVIVGITEEGKWLYVDSVESIRDESWRDKS 81

Query: 46  ---------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                +  +  D+AF VLHG +GEDG +Q + EL  +PY   G+
Sbjct: 82  VRAVFSPDATEKCVLIERESGVEKVPVDVAFPVLHGLYGEDGTIQGLFELARLPYVGCGV 141

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGG 136
           LASA+SMDK+ +K V  + GV     + V R  +          +   S P  IKP   G
Sbjct: 142 LASAVSMDKLYTKIVADTLGVRQAAYVPVMRGELSHMESVTERVEKYFSYPVFIKPSNAG 201

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----I 192
           SS G+        +   L +++   H  ++L+E+ + G E+ C V G  + +V       
Sbjct: 202 SSRGVSKASDRSELENGLREAA--KHDRKILVEEMIVGREVECAVFGGGNGEVISSGVGE 259

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  +DFY ++ KY +  S  V+  ++P D  ++V+  A     A+   G++R DF    
Sbjct: 260 ILAAADFYDFDAKYYNEESRTVVNPELPGDAAEKVREAARRIFTAVDGYGMARVDFFVTE 319

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              +V + EIN  PG T +S++P +   AG    EL+  ++E+
Sbjct: 320 Q-GEVVFNEINTIPGFTAISMYPMLFEAAGVDKTELVTRLIEN 361


>gi|307700634|ref|ZP_07637662.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
 gi|307614164|gb|EFN93405.1| D-ala D-ala ligase N-terminal domain protein [Mobiluncus mulieris
           FB024-16]
          Length = 374

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 84/360 (23%), Positives = 147/360 (40%), Gaps = 66/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S ++       ++   F+   I + R    VL              
Sbjct: 9   VAVIFGGSSGEHSISCATAAGVLEHIDRNRFEPVPIGITRGGAWVLMPDEVEALRLQDGQ 68

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+   +LHG +GEDG +Q + E
Sbjct: 69  GAEVTDNGTFVALVPQNQHLFFWDTRVADSPIRDLGRIDVVMPLLHGPYGEDGTIQGLCE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           ++ +PYT  G+ ASAL MDK  +KQV+   G+PV    ++  +    +          + 
Sbjct: 129 MVGVPYTGCGVTASALCMDKGYTKQVLERGGIPVGRFHVITDYAWRHRESAVPAEVLDLG 188

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P  +KP + GSSLG+  ++  +     ++ +    H  ++++E  V G  E+ C V+  
Sbjct: 189 LPVFVKPSRAGSSLGVSRVEAWEEFEAAVVAAR--RHDPKVIVEAGVVGAREVECAVLEG 246

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQ 236
                   A P               S +         +PA+IP  + K +   A  A +
Sbjct: 247 RDGAAPRTAFPGEVVMKQTPGLYDFESKYFAQDAVSLSIPAQIPELVAKRICDYARQAFE 306

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++R DF +   + ++   EIN  PGMTP S+FP M  + G  +++L+  ++E A
Sbjct: 307 LVSGEGLARVDFFYVEETGRLILNEINTMPGMTPFSLFPGMWEHMGMPYQDLVTELIEIA 366


>gi|210614784|ref|ZP_03290313.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
 gi|210150553|gb|EEA81562.1| hypothetical protein CLONEX_02527 [Clostridium nexile DSM 1787]
          Length = 351

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 96/350 (27%), Positives = 161/350 (46%), Gaps = 55/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSL+SG      L + G +   +DV                      
Sbjct: 3   IVVLAGGLSTERDVSLTSGAGICRTLRENGHQAFLLDVFLGFPYDSDKLEEVFTLPNAGL 62

Query: 39  --------DRSVGLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAIL 72
                          +   +                   D+ F  LHG+ GE+G +QA  
Sbjct: 63  EIADGIKTTEPDLAAIKASREDQSDCFLGPNVIDICRLADIVFMGLHGDVGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           ++L I YT    L SAL+MDK  +KQ+ +  GVP      + +   D+      ++ P V
Sbjct: 123 DILGIKYTGPNYLGSALAMDKGVTKQIFTMAGVPTPLGTNLTKDRKDTALSDLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++    +    +  S    + D+++IE Y+ G E   G++   +L V
Sbjct: 183 VKPCSGGSSIGVYIVDTMDAYKEAVENSF--RYEDEIVIEPYIKGREFAVGIIDGKALPV 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY    +  + PA I  ++ + +QR A LA +A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQDGCTEEICPANIDEEVTERMQRAAELAFKALKLDIYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            D  +  ++ LE+N  PGMT  S+ P+ A  AG ++ +L   +++ +   
Sbjct: 300 LDE-NNDIYCLEVNSLPGMTAASLLPKEARAAGITYGDLCELIIQKSLAR 348


>gi|226305903|ref|YP_002765863.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
 gi|259645171|sp|C0ZXN9|DDL_RHOE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226185020|dbj|BAH33124.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis PR4]
          Length = 368

 Score =  158 bits (399), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 91/360 (25%), Positives = 155/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +  S L+   + V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAISGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+PV   +++         + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGIATLTEEQKAELGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+GI  +     +   +  +    H  ++++E  + G E+ CGV+   +   
Sbjct: 188 VKPARGGSSIGITRVSNWDGLDGAIAHAR--LHDPKVIVEGAIIGREVECGVLEFPNGDV 245

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + + +       FY ++ KY        +PAK+   +  +++ LA  A +A+ 
Sbjct: 246 KASVVAEIRMPDADTDSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G+SR DF            EIN  PG T +S++P+M    G  +R L+  +V+ A   
Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAIAR 363


>gi|229491375|ref|ZP_04385199.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
 gi|229321660|gb|EEN87457.1| D-alanine--D-alanine ligase [Rhodococcus erythropolis SK121]
          Length = 368

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 156/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  VS  S  +  S L+   + V  I +      VL    P         
Sbjct: 8   VAVIFGGRSNEHSVSCVSAGSVLSNLDPDRYDVVPIGITVDGSWVLGSSDPSSLAIRGRA 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 68  LPSVDKDGTSVVLSADPTREGEVISFDGSDAGAVLASVDVVFPVLHGAYGEDGTIQGLLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY   G+LASA  MDK  +K+++++ G+PV   +++   T     + +  +  P  
Sbjct: 128 LAGVPYVGPGVLASAAGMDKEFTKKLLAAEGLPVGVQVVLRPGTATLTEEQKAELGLPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+GI  +     +   +  +    H  ++++E  + G E+ CGV+   +   
Sbjct: 188 VKPARGGSSIGITRVSNWDGLDGAIAHAR--LHDPKVIVEGAIIGREVECGVLEFPNGDV 245

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + + +       FY ++ KY        +PAK+   +  +++ LA  A +A+ 
Sbjct: 246 KASVVAEIRMPDSDADSDAFYDFDTKYLDDVCEFDIPAKLDESVSDQIRELAVRAFKALD 305

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G+SR DF            EIN  PG T +S++P+M    G  +R L+  +V+ A   
Sbjct: 306 CQGLSRVDFFVTADG--PVINEINTMPGFTSISMYPKMWNATGIDYRTLISTLVDTAVAR 363


>gi|297626506|ref|YP_003688269.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
 gi|296922271|emb|CBL56843.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           [Propionibacterium freudenreichii subsp. shermanii
           CIRM-BIA1]
          Length = 375

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/357 (24%), Positives = 137/357 (38%), Gaps = 62/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E EVS  +      A++   ++V  I +D+S                   
Sbjct: 11  VAVIFGGQSNEHEVSCLTAAGVLGAIDQTRYRVHGIGIDKSGLWHRYSVDEIRALQIVDG 70

Query: 45  ------------------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                         + A    D+AF ++HG + EDG VQ  LE+
Sbjct: 71  VMPSIGADHPLAELFRDAGGVHLATLDEDRLTAREPIDVAFPLMHGAYAEDGTVQGKLEM 130

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LIS 125
           L + Y   G+ +SAL MDK  +  V+ + GVP    + V R                 + 
Sbjct: 131 LGLKYVGCGVTSSALGMDKEYTHTVLEAAGVPTAAWVRVGRDEWMRDPDAIVARIGSQLG 190

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDGIELTCG 180
            P  +KP +GGSS+GI  +    S+   +                +   +   GI    G
Sbjct: 191 YPVFVKPARGGSSVGISRVTGPDSLAAAIDAARLVDPKVLVEQAVVGAREVECGILGGDG 250

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
               AS     +   +  FY Y  KY         +PA +   + + VQ LA     A+ 
Sbjct: 251 TAPRASHTGEIVMHTEDRFYDYRAKYLPEEQVDLRVPAGLEPQVERRVQELALQCFTALD 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G++R D    P   +V   EIN  PG T  S++P M   +G  + EL+  ++  A
Sbjct: 311 CEGLARVDTFVLP-DGQVLINEINTMPGFTKFSMYPNMWRASGIDYPELIDQLIALA 366


>gi|332362739|gb|EGJ40535.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK49]
          Length = 353

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 97/339 (28%), Positives = 158/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADDKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEQLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEKVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEHAFAKR 348


>gi|288923495|ref|ZP_06417614.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288345153|gb|EFC79563.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 390

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 94/352 (26%), Positives = 156/352 (44%), Gaps = 60/352 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKP--------- 51
            +L GG S+E  +S  S      AL+ + + V  + +D     V L    P         
Sbjct: 34  VLLFGGRSTEHAISCVSAGGVLRALDRSRYDVIPVGIDPEGRWVVLPEDSPVLTAVSADL 93

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L++
Sbjct: 94  PTVNAADGIEVTLTPDPTKPRLLVSDPSSPLRDLGTVDVVFPLLHGPFGEDGTIQGLLDM 153

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIK 131
             +PY  SG+ ASA +MDK   K+++++ G+PV P  +V      S+     +  P  +K
Sbjct: 154 SGLPYVGSGVFASATAMDKQHMKRILAASGLPVGPYTVVRPGQTLSETERELLGLPVFVK 213

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +     +      +   +   ++L+E  + G E+ CGV+        E
Sbjct: 214 PARGGSSIGISRVDAWADLDTAFKAAR--SSDPKVLVEAAIVGREIECGVLDRLDGSGPE 271

Query: 192 IAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +VP          FY +E KY S  +   +PA++P ++ + V+  A  A++A+ C G++
Sbjct: 272 ASVPAEITVTSSAGFYDFEAKYVSDGARLDVPAQLPHELTERVRATATAAYEALDCAGLA 331

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R D    P    +   E+N  PG T  S+FP++ A +G  F  L   +V+ A
Sbjct: 332 RVDMFVTPA-GDIVLNEVNTMPGFTSTSMFPQVWAASGLDFAALTDRLVQLA 382


>gi|256845950|ref|ZP_05551408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
 gi|256719509|gb|EEU33064.1| D-alanine-D-alanine ligase [Fusobacterium sp. 3_1_36A2]
          Length = 287

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 101/296 (34%), Positives = 158/296 (53%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQGYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I   +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKAYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + +        + +IE Y+ G ELT 
Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKIV------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|296171291|ref|ZP_06852695.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
 gi|295894259|gb|EFG74016.1| D-alanine-D-alanine ligase [Mycobacterium parascrofulaceum ATCC
           BAA-614]
          Length = 363

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 96/360 (26%), Positives = 152/360 (42%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 3   VAVVFGGRSNEHAISCVSAGSILRNLDPERFEVVAIGITPQGSWVLTDGDPDALAISNRQ 62

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 63  LPEVTAQSGTELALPADPLRSGQLVSLSTGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 122

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K++  + G+PV    ++         D    +  P  
Sbjct: 123 LAGVPYVGAGVLASAAGMDKEFTKKLFVAEGLPVGDYAVLRPSRSTLRPDECERLGLPVF 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +      + +  H  ++++E  + G E+ CGV+       
Sbjct: 183 VKPARGGSSIGVTRVSSWDDLAA--AVAVARRHDPKVIVEAAITGREVECGVLEMPDGSV 240

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  DI   ++ LA  A +AI 
Sbjct: 241 EASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDDIADAIRDLAIRAFKAID 300

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 301 CQGLARVDFFLT--DDGPVLNEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 358


>gi|260463766|ref|ZP_05811963.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|259030363|gb|EEW31642.1| D-alanine/D-alanine ligase [Mesorhizobium opportunistum WSM2075]
          Length = 368

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 83/352 (23%), Positives = 148/352 (42%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S+E +VS  S      A++   ++V  I + R    +L              
Sbjct: 7   VAILYGGRSAEHDVSRLSAANVLKAIDRTRYEVVPIAISRDGRWLLQPSSEAGVDGAGAP 66

Query: 47  -----------------------AHLKPD-----LAFNVLHGNFGEDGLVQAILELLEIP 78
                                  A ++PD     + F VLHG FGEDG VQ   E+ ++ 
Sbjct: 67  VSGDGVEVALLPGGKGRLVAVPQAGVRPDLSPVDVVFPVLHGPFGEDGSVQGYAEVADVA 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLK 134
           Y   GILASA +MDK  +K+++   G+ V  S+           +    +  P+  KP +
Sbjct: 127 YVGCGILASAAAMDKDVAKRLMREAGLAVARSVTVLRGDVCSFQEIAGALGLPFFAKPAR 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-------L 187
            GSS G+  +K        +  +    +  ++LIE++V+G E+ C V+  A         
Sbjct: 187 QGSSFGVSKVKDRDGFEQAVETAL--RYDSKVLIEEFVEGREIECSVLQRADGSLTVSLP 244

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                A     +      + +  +   +PA +P  +  + + +A  A +A+GC  ++R D
Sbjct: 245 GEIIPAGKHGFYTYEAKYFDADGAVVKVPADVPAGVAGKAKEMAAQAFRALGCEAMARVD 304

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           F        +   E+N  PG T +S++ +  A  G  + +++  ++E A   
Sbjct: 305 FFL-RADGSLLVNEVNTLPGFTDISMYAKALAAIGIGYSQVIDVLIEHALAR 355


>gi|238752433|ref|ZP_04613910.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
 gi|238709366|gb|EEQ01607.1| D-alanine--D-alanine ligase [Yersinia rohdei ATCC 43380]
          Length = 287

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/289 (32%), Positives = 151/289 (52%), Gaps = 13/289 (4%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            SG+A  + L +AG     ID        L     D  F  LHG  GEDG +Q +LE L+
Sbjct: 2   LSGQAVLAGLREAGIDAHGIDTKDFPVTELKAQGFDKVFIALHGRGGEDGTLQGVLEFLQ 61

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPP 127
           +PYT SG++ASAL+MDK+R+K V  + G+P+ P + +NR   ++            +  P
Sbjct: 62  LPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALNRQQFETLSSEELSASVAKLGLP 121

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            ++KP   GSS+G+  + K   +   L+++    H   +LIE+++ G E T  ++GD  L
Sbjct: 122 LIVKPSHEGSSVGMSKVDKISELQGALVEAF--RHDTDVLIEKWLSGPEFTVAILGDEVL 179

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               I  P    Y YE KY S  + +  P+ +  ++ +++  L+  A+QA+GC G  R D
Sbjct: 180 PSIRIQAPGVF-YDYEAKYLSDETQYFCPSGLSAELEQQLAALSLQAYQALGCSGWGRVD 238

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + D      + LE+N  PGMT  S+ P  A  +G SF +L+  ++  A
Sbjct: 239 VMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSFSQLVARILTLA 286


>gi|332361733|gb|EGJ39537.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1056]
          Length = 353

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAETAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|328755989|gb|EGF69605.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 315

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRGGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|183981746|ref|YP_001850037.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
 gi|183175072|gb|ACC40182.1| d-alanine--D-alanine ligase DdlA [Mycobacterium marinum M]
          Length = 373

 Score =  158 bits (398), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 99/357 (27%), Positives = 157/357 (43%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 13  VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 73  LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ S+ G+P+ P  ++              +  P  
Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +P  +  +    H  ++++E  ++G EL CGV+       
Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAIAAAR--RHDPKVIVEAAINGRELECGVLEFPDGRL 250

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +E KY    +   +PAK+  D+   V++LA  A +AI 
Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A
Sbjct: 311 CQGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETA 365


>gi|71892247|ref|YP_277981.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|123640879|sp|Q492J5|DDL_BLOPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|71796353|gb|AAZ41104.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia pennsylvanicus
           str. BPEN]
          Length = 368

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 88/340 (25%), Positives = 154/340 (45%), Gaps = 47/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S    A  ++   F+   + +D+     L              
Sbjct: 6   IGIICGGRSLEHEISLKSAMCIAQFIDKFRFEAMILWIDKKGCWHLKDIDFNDLSYHKDE 65

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  LK D+ F V+HG  GEDG +Q +L ++ +P+  S +L
Sbjct: 66  KISILLQNCPYPFKFHTKNINILLKFDVIFPVVHGTLGEDGALQGLLCMMNLPFVGSNVL 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           +S++ MDK  SK ++   G+ V P          N        +   P  +KP   GSS+
Sbjct: 126 SSSVGMDKDVSKCLLRDAGLSVVPFRTVLAQDQHNIDFDYFVSIFGLPLFVKPSNQGSSI 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPK 196
           G+  + K +   L L+++   +  +++LIE  + G EL C              E+ +  
Sbjct: 186 GVSKVTKCKDFNLALIKAF--SFSNKILIEPAIIGRELECAVLGNDNPKISVCGEVILSD 243

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           ++FY+Y  KY    +  ++PA I   I  +++ +A  A Q + C G++R D   + L  K
Sbjct: 244 NNFYTYHDKYVKRKAQIMIPALINDAISDDIRHIALRAFQVLNCSGMARVDVFLN-LDNK 302

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  E+N  PG T  S++P++   +G + +EL+  +VE A
Sbjct: 303 IFINEVNTLPGFTFDSMYPKLWEVSGLNLQELITKLVELA 342


>gi|312879691|ref|ZP_07739491.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
 gi|310782982|gb|EFQ23380.1| D-alanine--D-alanine ligase [Aminomonas paucivorans DSM 12260]
          Length = 314

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 152/305 (49%), Gaps = 14/305 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA--HLKPDLAFNVLHG 60
           V  GG S ER VSL SGKA A AL  AG +V   D+   +G+V A      DL F  LHG
Sbjct: 5   VACGGDSPERAVSLRSGKAVAEALAVAGHQVFLEDLPTCLGVVEAARDRGADLVFVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GEDG +QA+LE   IPYT SG  +   +MDK  ++ V    G+PV P  +  R     
Sbjct: 65  GWGEDGRLQAVLEAHGIPYTGSGPESCMAAMDKELTRAVFLDRGLPVPPGKVYEREDAAL 124

Query: 121 QHLISP------PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             L S          +KP   GS++G+ ++ + + +     +  +  + D+L+ E+++ G
Sbjct: 125 PDLESLMAREGGHLALKPCCCGSTVGVSLVHRPEDLREA--RDLALKYDDRLVAERFIPG 182

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            ELT  V  +             P   FY Y  KY+S  + ++ PA +   +   V  LA
Sbjct: 183 RELTVAVFEEGGRPRALPAIEIRPHEGFYDYRNKYTSGATEYLCPAPLEEALAARVGSLA 242

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             AH+A+GCR  SR DF       + F LE+N  PGMT  S+ P+  A  G+SF ++   
Sbjct: 243 EAAHRALGCRVYSRVDFRLSEE-GEPFLLEVNTAPGMTGTSLVPKAGAAVGWSFPQVTDR 301

Query: 292 MVEDA 296
           +V  +
Sbjct: 302 IVRAS 306


>gi|325688255|gb|EGD30274.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK72]
          Length = 353

 Score =  157 bits (397), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+ERE+S+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREISVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPVADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 RAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G++R DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLARCDFFYTE-DSQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G S+ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLSYPDLIEKLVGLAEEAFAKR 348


>gi|327334103|gb|EGE75818.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL096PA3]
          Length = 315

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPAPCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|302384965|ref|YP_003820787.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
 gi|302195593|gb|ADL03164.1| D-alanine/D-alanine ligase [Clostridium saccharolyticum WM1]
          Length = 354

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 94/345 (27%), Positives = 150/345 (43%), Gaps = 53/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            VL GG SSE  VS  S     + ++   ++V+ I +      +                
Sbjct: 7   VVLFGGQSSEHIVSCMSVVNVINHIDREKYEVALIGITEEGRWIKTDSVEDIETGTWKNG 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    LK D+ F VLHG  GEDG VQ +LEL  IPY   G
Sbjct: 67  TVSAVISPDATMGGIILLDGEKTEVLKADVVFPVLHGLLGEDGTVQGLLELARIPYVGCG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +L+SA+SMDK+ +K +V   GV     + V R  +          +   S P  +KP   
Sbjct: 127 VLSSAVSMDKLYTKIIVDDLGVTQAAYVPVMRHDLKDMDLVVGKVEERFSYPVFVKPSNA 186

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG----DASLDVTE 191
           GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G     A      
Sbjct: 187 GSSKGVSRAEDRKELMEALTEAA--VHDRKILVEEMIVGREIECAVFGGGNLPAEASGVG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY ++ KY + +S  V+   +P    + V+  A    QA+   G++R DF   
Sbjct: 245 EILAAAEFYDFDAKYYNSDSRTVVDPVLPEGAAERVKEAAKAIFQAVDGYGLARVDFFV- 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                V + EIN  PG T +S++P +   AG +  EL+  ++E A
Sbjct: 304 KEDGSVVFNEINTMPGFTAISMYPMLWEAAGMNKDELVGRLMEHA 348


>gi|262066312|ref|ZP_06025924.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
 gi|291380007|gb|EFE87525.1| D-alanine--D-alanine ligase [Fusobacterium periodonticum ATCC
           33693]
          Length = 287

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 106/296 (35%), Positives = 161/296 (54%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+  G+    + +D +  +        DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLQRQGYDAYGVVLDETNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASAL+MDK ++K       +     I V +   D
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASALTMDKNKTK------QIAENIGIRVPKSYAD 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     L +        + +IE Y+ G ELT 
Sbjct: 117 LESIERFPVIIKPVDEGSSKGLFLCNNKEEAGEALKKV------KKPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H+   
Sbjct: 171 GVLNGKALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIEDKSYKEAMKIAEKIHKEFK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +GISRSDF+      K+++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGISRSDFILSE--GKLYFLEVNSSPGMTKTSLIPDLATLQGYTFDDVVRLTVET 284


>gi|306833025|ref|ZP_07466157.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
 gi|304424924|gb|EFM28058.1| D-alanine-D-alanine ligase [Streptococcus bovis ATCC 700338]
          Length = 348

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/331 (27%), Positives = 148/331 (44%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+EREVS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+   +         +   +    ++ P  IKP   GSS+GI    
Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFIKPANMGSSVGISKAD 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            ++ +   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I  +I +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|123969037|ref|YP_001009895.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. AS9601]
 gi|166198501|sp|A2BSM7|DDL_PROMS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123199147|gb|ABM70788.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. AS9601]
          Length = 355

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 83/343 (24%), Positives = 136/343 (39%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGL------------ 44
           + ++ GG S+E EVS+SS K    A    +    F +    +++                
Sbjct: 9   IGLIFGGNSNEHEVSISSAKTVFQAFKSEINKERFTIRAFYINKYGDWLDSDSSEKILID 68

Query: 45  -----------VLAHLKP-----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                      +    K            D+ F +LHG  GEDG +  +L   + P    
Sbjct: 69  ESKNKNTTKKQIFNQEKINFLDGVDFQNVDVWFPLLHGINGEDGSIHGLLRFTKKPLVGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIK 131
           GI+ SAL MDK+  K + S+  +P    ++                 +    ++ P  +K
Sbjct: 129 GIIGSALGMDKILMKIIFSNLKIPQVNYLVFQNQDLNDEEVKNKLIHEILKKLNFPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI  +     I   L ++   +    +     V  IE               
Sbjct: 189 PSNSGSSLGISKVINKSEIIPALEKARGIDPSILIEEGLEVREIECGIIGNSKLLTSEIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               KSD+Y Y  K    N+  ++PA+I   I KE++ +A  + +A+   G +R DF  +
Sbjct: 249 EVNYKSDWYDYNSK-YHSNNKIIIPAEIDSKISKEIKEIAIKSCRALNIFGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             S K+F  EIN  PG T  S+FP +   +G    +L+  +V+
Sbjct: 308 KSSNKIFLNEINTIPGFTKNSMFPMLWKASGLKIEQLVAKLVD 350


>gi|50843773|ref|YP_057000.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|50841375|gb|AAT84042.1| D-alanine--D-alanine ligase B [Propionibacterium acnes KPA171202]
 gi|332676729|gb|AEE73545.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 327

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 17  VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 76

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 77  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 136

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 137 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 194

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 195 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 255 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 313

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 314 VCSRLVDD 321


>gi|289427317|ref|ZP_06429030.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159247|gb|EFD07438.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313765048|gb|EFS36412.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792590|gb|EFS40676.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313803591|gb|EFS44773.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313806833|gb|EFS45331.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313814241|gb|EFS51955.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|313815703|gb|EFS53417.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313817621|gb|EFS55335.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313821552|gb|EFS59266.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313824504|gb|EFS62218.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313826848|gb|EFS64562.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|313829166|gb|EFS66880.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
 gi|313839600|gb|EFS77314.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314916192|gb|EFS80023.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917458|gb|EFS81289.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314921795|gb|EFS85626.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314926258|gb|EFS90089.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314930938|gb|EFS94769.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314955392|gb|EFS99797.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314959137|gb|EFT03239.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314961641|gb|EFT05742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314963897|gb|EFT07997.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314969105|gb|EFT13203.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|314979943|gb|EFT24037.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314990666|gb|EFT34757.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315078970|gb|EFT50982.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315081519|gb|EFT53495.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315083057|gb|EFT55033.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086591|gb|EFT58567.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315087994|gb|EFT59970.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|315099364|gb|EFT71340.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315102294|gb|EFT74270.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315107411|gb|EFT79387.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
 gi|315109706|gb|EFT81682.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327444492|gb|EGE91146.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|327454233|gb|EGF00888.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327456291|gb|EGF02946.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327457435|gb|EGF04090.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328757997|gb|EGF71613.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|328758953|gb|EGF72569.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
          Length = 315

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|291294737|ref|YP_003506135.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
 gi|290469696|gb|ADD27115.1| D-alanine/D-alanine ligase [Meiothermus ruber DSM 1279]
          Length = 322

 Score =  157 bits (397), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 99/321 (30%), Positives = 158/321 (49%), Gaps = 33/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           +L GG   E EVSLSS +   +A+         + + +    +L                
Sbjct: 5   LLAGGPPGEHEVSLSSARGVLAAMP---HPTELVVIAKDGRWLLGEDAYEALRAGVAEQG 61

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                        D+ F +LHG  GEDG++Q  L+LL  PY  +G+ +SAL MDK   K+
Sbjct: 62  THPFPPPVPWQHYDVVFPLLHGPLGEDGVIQGFLQLLRRPYVGAGVASSALCMDKDLCKR 121

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V+   G+PV P + + +     Q    PPY +KP   GSS+GI  +K DQ     L ++ 
Sbjct: 122 VLRQAGIPVVPWVTLYKGEPTPQPPFPPPYFVKPANTGSSVGISKVKADQDATRALAEAF 181

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           +W   D++L+EQ ++G+   E+       A   V      +S+FY YE KY+   +   L
Sbjct: 182 AW--DDKVLVEQGIEGVRELEVALLGNIHAEASVVGEITYQSEFYDYETKYTEGKAQLHL 239

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA IP ++  E++  A  A++ +G RG++R DF   P   +++  E N  PG TP S++P
Sbjct: 240 PAPIPPELSDEIRATALEAYRILGVRGMARVDFFLSPQ-GELYLNEFNTIPGFTPTSMYP 298

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++    G ++ +LL  +V  A
Sbjct: 299 KLWQATGLAYPDLLDRLVRLA 319


>gi|295100377|emb|CBK97922.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii L2-6]
          Length = 366

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 92/349 (26%), Positives = 155/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG+SSE EVS  S       L+   +++  I + +    +               
Sbjct: 11  VVVLFGGMSSEHEVSRVSAGTFVDQLDRQRYELLTIGITKEGRWLYTEADSAQMADGSWE 70

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 71  ELPGNMPCVLSPDRADHGLILFTPAGQVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+                +  P  
Sbjct: 131 YVGCGVLASAVCMDKAVANAMFDASGIPHTKWLSATRWEIESDPDGVCDGVIAKLGWPIF 190

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 191 VKPANAGSSVGITKAHDRDELKAAIRLAL--ANDRKVVFEAFVDGHEVECAVIGSDPAVS 248

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA++P +   EV+  A +A+ A+GC G++R D
Sbjct: 249 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLPEEKLDEVKTYAAMAYTALGCEGLARCD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++  A
Sbjct: 309 FFVEKDTGRVLINEINTLPGFTPISMYPKLMEHEGIPVPALIDRLIALA 357


>gi|154500480|ref|ZP_02038518.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
 gi|150270711|gb|EDM98007.1| hypothetical protein BACCAP_04152 [Bacteroides capillosus ATCC
           29799]
          Length = 350

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/345 (30%), Positives = 154/345 (44%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AVL GG S+E  VSL S  A  + L+ A + +  + + R    +               
Sbjct: 6   IAVLFGGCSTEYPVSLQSAHAVITHLDRAKYDLVLLGITRDGRWLHYDGPVDHIPADTWH 65

Query: 46  ----------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                 LA   P     D AF VLHG  GEDG VQ +LEL  IP
Sbjct: 66  RNAAHCTPALISPDRETHGLLLLAAAGPSVIRLDAAFPVLHGKNGEDGTVQGLLELAGIP 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPL 133
               G L SA+ MDK  + ++ +S G+ V  S L   +   +        +S P  +KP 
Sbjct: 126 VVGCGSLGSAVCMDKDVAHRLAASAGLAVPRSALFRSWEDPALLPDLTAGLSLPLFVKPA 185

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTE 191
           + GSS GI  +     +P  +  +    H D+++IE+ V G E+ C V      ++   +
Sbjct: 186 RSGSSFGITRVTDRADLPQAVAAAL--EHDDKVVIEESVPGFEVGCAVLGTETLTVGRVD 243

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F+ Y  KY  L S   +PA+I  +    +Q+ A  A++A+GC G +R+DF F 
Sbjct: 244 EIELTQGFFDYTEKYQLLTSKIHMPARITPEDEARIQQAAVTAYRALGCTGCARADFFFT 303

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P   ++ + EIN  PG T  S +P M A  G  F  L+  +VE A
Sbjct: 304 PE-GEIVFNEINTIPGFTSHSRYPAMMAGVGLDFSALVNRLVEQA 347


>gi|332653072|ref|ZP_08418817.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
 gi|332518218|gb|EGJ47821.1| D-alanine--D-alanine ligase [Ruminococcaceae bacterium D16]
          Length = 349

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 104/347 (29%), Positives = 153/347 (44%), Gaps = 51/347 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------VDRSVGLVLAHL 49
           + VL GG+S ER VSLSSG     AL   G KV+ +D           VD     +    
Sbjct: 3   IVVLAGGLSPERNVSLSSGAMVCEALRSKGHKVALMDLFFGVEGTDRTVDPFEAPIPQAF 62

Query: 50  K----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
           K                                   D+ +  LHG  GEDG +QA L+LL
Sbjct: 63  KKVSPEAPDLVQVRASRKDTSPSAIGQGVLELCAQADVVYLALHGACGEDGRIQATLDLL 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133
            +PYT SG L SA++MDK  +K++V+          +                P V+KP+
Sbjct: 123 GVPYTGSGCLGSAIAMDKDMTKRLVAHKVRTPSWCTVTVTEENLEQLMEETKLPVVVKPI 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+G+ +      +   L +S     G + ++EQYV G E+   V+   +L      
Sbjct: 183 ASGSSIGVTIAHTKDDLRRGLEESIRL--GGRTVLEQYVKGREIQVAVLNGKALPSI-EI 239

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +P++DFY Y  KY    +  V PA+IP +  K+V   A    + +G    SR+DF+    
Sbjct: 240 IPQADFYDYANKYQPGAAREVCPAEIPPEWEKKVGDAAVAVFEELGLSVYSRADFIVTE- 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             + ++LEIN  PGMTP S+ P+ AA  G  +  L   +V  +   R
Sbjct: 299 DGEAYFLEINTLPGMTPTSLVPQEAAAVGMDYATLCETIVASSLKAR 345


>gi|227495298|ref|ZP_03925614.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
 gi|226831168|gb|EEH63551.1| D-alanine--D-alanine ligase [Actinomyces coleocanis DSM 15436]
          Length = 370

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 79/359 (22%), Positives = 140/359 (38%), Gaps = 61/359 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + +L GG S E  +S ++  A  +A++   F+V  + +      V A   P         
Sbjct: 10  VMLLFGGRSGEHMISCATASAVMAAIDRERFEVVPVGITLEGQWVPALDDPQHYALKDGE 69

Query: 52  -------------------------------------DLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +L+ 
Sbjct: 70  GAFVEAQGTQVAFLAGTNRLVEFSASNPEVFKDLGEVDVVFPLLHGPFGEDGTIQGLLDT 129

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISP 126
            ++ Y   G+ ASA  MDK  +K ++            +     +      ++    +  
Sbjct: 130 ADVRYVGCGLTASAAGMDKHLTKTIIQQAGIPVGRWELITDRQWLQDREGCLERIKALGE 189

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
              +KP + GSS+GI  +     +   + ++    H  ++++E    G EL CGV+    
Sbjct: 190 VVFVKPNRAGSSVGITRVADFTQLEAAVEEAR--RHDPRVIVEAATPGRELECGVLEFLD 247

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHV-----LPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                     +   +    + +           +PA IP  +   +Q  A     A+GC 
Sbjct: 248 GPRASAVGEITVSGADFYDFETKYQDPDAVSLSIPADIPEGVRMRLQEAAVKVFDALGCE 307

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+SR DF ++  + ++   EIN  PG TP S++P M    G S+ EL+  +++ A   R
Sbjct: 308 GLSRVDFFYNEETDELSLNEINTMPGFTPFSMYPTMWQQQGLSYPELVTHLIDMALTRR 366


>gi|313157691|gb|EFR57102.1| D-ala D-ala ligase N-terminal domain protein [Alistipes sp. HGB5]
          Length = 328

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 90/327 (27%), Positives = 159/327 (48%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG S ERE++L S     SAL+   + ++ ID+                    D 
Sbjct: 6   IALMAGGDSPEREIALQSAAQIESALDHEKYDITVIDLHHRDWHYTAPDGRQWQVDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +       D A  ++HG  GEDG +Q  L+++ +PY+   + +S ++ DK+ +K+ V
Sbjct: 66  SLTVEGERKVFDYALIIIHGTPGEDGRLQGYLDMMGVPYSSCSMTSSVITFDKVTTKRTV 125

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+ +   I + +       +       P  IKP   GSS G+  +     +   +  
Sbjct: 126 AGRGINLAREIFLCKGETADPDEVIAEFGLPLFIKPNASGSSFGVTKVHTRDEVLPAVEA 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      D++LIE+ ++G E+ CG+M       L      V K DF+ Y+ KY+   S  
Sbjct: 186 AF--AQSDEVLIEECIEGREMGCGMMVAGGREYLFPITEIVSKKDFFDYQAKYTEGYSDE 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +I +E+ R+  +A++A  C G+ R DF+  P   K + +EIN  PGM+  SI
Sbjct: 244 ITPAQIAPEIAEELHRMTRIAYKACRCSGVVRVDFIVTPE-GKPYMIEINSIPGMSAGSI 302

Query: 274 FPEMAAYAGYSFRELLLWMVEDASCLR 300
            P+ A   G +  E+   ++ D +C +
Sbjct: 303 VPKQAKAMGMTLGEMFDLVIAD-TCRK 328


>gi|288904861|ref|YP_003430083.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
 gi|288731587|emb|CBI13142.1| D-alanyl-D-alanine ligase [Streptococcus gallolyticus UCN34]
          Length = 348

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+EREVS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+   +         +   +    ++ P  +KP   GSS+GI    
Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVTEVNEKLTYPVFVKPANMGSSVGISKAD 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            ++ +   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|332363453|gb|EGJ41236.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK355]
          Length = 353

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 98/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       V +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGISQVPYVALVDGEDVEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+GC G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGCLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEKAFAKR 348


>gi|213964603|ref|ZP_03392803.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
 gi|213952796|gb|EEB64178.1| D-alanine--D-alanine ligase [Corynebacterium amycolatum SK46]
          Length = 367

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/357 (25%), Positives = 153/357 (42%), Gaps = 61/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV+ GG S E  VS  S  A    L++  F+V  I + +     +              
Sbjct: 14  VAVIYGGASPEHSVSCVSAGAIMDHLDEDRFRVVPIGITKDGVWTVGTRETDTLRTQGRT 73

Query: 48  --------------------HLKP-------------DLAFNVLHGNFGEDGLVQAILEL 74
                                 +              D+ F VLHG  GEDG +Q + EL
Sbjct: 74  MPEVIPGEEVALSTSPSRRGEFRFVTGDRAGEVFDTVDVIFPVLHGPHGEDGTIQGLFEL 133

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131
             I Y   G+LASA  MDK R+K ++ + G+P+   ++++       + +  +  P  +K
Sbjct: 134 SGIAYVGPGVLASAAGMDKERTKNLLQAAGLPIGKQVVLHVGESLSDEDKETLGLPVFVK 193

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC--------GVMG 183
           P +GGSS+GI  +    ++   +  +    H  ++++E  VDG E+           +  
Sbjct: 194 PARGGSSIGISRVDDWANLDAAVELAR--EHDWKVIVEAGVDGAEVEIGVLQRADGSLQV 251

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                +         FY +E KY     +  +PA++P D+ K +   A  A +A+G  G+
Sbjct: 252 SVPSLLRGTEDSDEGFYGFETKYLDDVVSAQIPAELPKDVLKALDTDARRAFRALGSDGL 311

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R DF            E+N  PG TP+S++P+M A +G ++ ELL  ++E A   R
Sbjct: 312 TRVDFFVT--DNGPIINEVNTMPGFTPISMYPQMFAASGVAYEELLSALIERALVAR 366


>gi|325289080|ref|YP_004265261.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964481|gb|ADY55260.1| D-alanine--D-alanine ligase [Syntrophobotulus glycolicus DSM 8271]
          Length = 339

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/337 (26%), Positives = 149/337 (44%), Gaps = 49/337 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S ER+VSLSSG   ++AL + G  V  +D                       
Sbjct: 3   IIVLAGGLSPERDVSLSSGALISNALIEKGHDVMLLDLYLGINNKHIEPAYINLKSNKTF 62

Query: 38  -----VDRSVGLVLAH-----------------LKPDLAFNVLHGNFGEDGLVQAILELL 75
                 +      +                    + D+ F  LHG+ GE+G +QA+L++ 
Sbjct: 63  SYLVPPEEPDLDAIKASVNNRGSLIGDGIIDLCKEADVVFLALHGSIGENGKLQAVLDIN 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            I YT +G + S L+MDK  SK+++ S  +       V+  T      I+ P V+KP   
Sbjct: 123 GIKYTGTGYVGSLLAMDKDLSKKLILSNNILTPHWKYVDLQTDTDFDDINYPCVVKPCSC 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+G+ +++    +   +  +    + + ++IE+ + G E + G++   +L V     P
Sbjct: 183 GSSVGVTMVETPSELNSAIEFAK--KYENSVIIEEKIVGREFSVGILNGEALPVI-EIKP 239

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY Y+ KY    +  + PA I  +I   +Q  A   H  +     SR DF+ D  + 
Sbjct: 240 LIGFYDYKNKYQKGLTGEICPANISNEIRYLLQNSAVKVHNLLRLGFYSRIDFILDQSNN 299

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             + LE N  PGMTP S+ P+ A     ++ +L   +
Sbjct: 300 A-YCLEANTLPGMTPTSLLPQEALANDITYSDLCEKI 335


>gi|194476569|ref|YP_002048748.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
 gi|171191576|gb|ACB42538.1| D-alanine--D-alanine ligase [Paulinella chromatophora]
          Length = 355

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 141/342 (41%), Gaps = 46/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVD----------------R 40
           + ++ GG S E +VS+ S +    AL +      + V    +D                 
Sbjct: 12  IGLVFGGASGEHQVSIRSAQTLVRALREGTNSERYDVKCFYIDLQGYCWPSIVAESILKE 71

Query: 41  SVGLVLAHLK-----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +                          D+    LHG  GEDG +Q +  L++ P+T SG
Sbjct: 72  DLFNQAIEFTNTSKQKGFRGMPEEADLIDIWCLALHGPNGEDGTIQGLFTLMQKPFTGSG 131

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL---------VNRFTMDSQHLISPPYVIKPLK 134
           +L SA+SMDK   K   ++ G+P  P I           N+     +  +  P  +KP  
Sbjct: 132 VLGSAVSMDKQAMKACFTAVGLPQVPYICLDILELERIPNKLVNRIEKSLGYPCFVKPAN 191

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSSLGI      Q +   L  +S+++    +        IE            V     
Sbjct: 192 LGSSLGISKCNSRQELISGLKLASAYDSRLVVERAVIAREIECAVVGKSVLRASVLGEIC 251

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            ++++Y Y  KY+  +S  V+PA +  +  +  + L+  A +A+G  GI+R DF +   +
Sbjct: 252 FENEWYDYTTKYTKGSSYMVIPAHLSEETTRRARELSLEACRAVGAYGIARVDFFYVEST 311

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T  S++P +   +G +  EL+  +++ A
Sbjct: 312 NNLWVNEINTLPGFTEQSMYPMLWMSSGLTLNELVHQLIKLA 353


>gi|256394928|ref|YP_003116492.1| D-alanine--D-lactate ligase [Catenulispora acidiphila DSM 44928]
 gi|256361154|gb|ACU74651.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 346

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 82/335 (24%), Positives = 140/335 (41%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  +S+ S +  A  L+ + ++   I + R     L              
Sbjct: 6   IGIMFGGCSEEHPISVKSAREVAKNLDTSKYEPFYIGITRDGAWRLCDGPEENWENGASR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ DL   VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVVSPDRGAHGLLVLDQGRYEAIRLDLVLPVLHGKLGEDGAIQGLLELAGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            S L +DK  +  V+ + G+       +        + +  P  +KP + GSS G+  + 
Sbjct: 126 TSVLCIDKTLTYLVIQNEGIATPRFWTLTPDEKIDPNELPYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   + ++    +  ++LIE+ V G E+ C V+G     +       +  + +   
Sbjct: 186 GKDELSGAIEEAR--LYDAKVLIEEAVVGSEIGCAVLGTGEDLLVGEVDRVALTHGFFKI 243

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          N+T ++PA IP      +Q  A L ++A+GCRG+SR DF        V 
Sbjct: 244 HQESAPETGSENATFIVPADIPAQSRALIQETAKLVYRALGCRGLSRVDFFL-KEDGTVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+N  PG+T  S +P M A AG+   E++  +V
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMAAAGFPMSEVIDRLV 337


>gi|108805132|ref|YP_645069.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
 gi|108766375|gb|ABG05257.1| D-alanine--D-alanine ligase [Rubrobacter xylanophilus DSM 9941]
          Length = 318

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 93/309 (30%), Positives = 156/309 (50%), Gaps = 18/309 (5%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG S ER+VSL++G+    ALE  G +V  +DV+ +    L  L+P   F  LHG 
Sbjct: 5   AVLRGGHSMERDVSLATGRRVQHALERLGHEVHPMDVEETTTERLIELEPAAVFVCLHGP 64

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG VQA+LE L IPYT SG L+S   MDK  +K+ +++ G+P        R  M+  
Sbjct: 65  GGEDGTVQALLETLGIPYTGSGPLSSIRCMDKDYAKRALAAAGLPTPRFCTFVRRAMNEM 124

Query: 122 ----------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P V+KP + GSS G+  +++ + +   +    ++ +  ++L+E++
Sbjct: 125 GAAAALNVAADSLGYPLVVKPAREGSSFGLSRVERPEELLDAV--YEAFGYDAKILLERW 182

Query: 172 VDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           V+G E++  ++  A             P+   Y+++ KY+   +   +PA++P      +
Sbjct: 183 VEGREVSVPILEPAGEAPRALGLVEIRPREGAYNFQAKYTPGMTDFAIPAELPPGTASRL 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +  A   ++ +GC G +R D +          L++   PG T  S FP  A  AG SF  
Sbjct: 243 EETALAVYRTLGCSGFARVDTIV--EGETPQVLDVKTIPGFTETSTFPLAAEAAGLSFER 300

Query: 288 LLLWMVEDA 296
           L+  +++ A
Sbjct: 301 LVEIILDSA 309


>gi|289424720|ref|ZP_06426503.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289155417|gb|EFD04099.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
          Length = 315

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPAGISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|256397141|ref|YP_003118705.1| D-alanyl-alanine synthetase A [Catenulispora acidiphila DSM 44928]
 gi|256363367|gb|ACU76864.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 394

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 159/376 (42%), Gaps = 82/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGLVLAHLK------ 50
           +AV+ GG SSE  +S  +  +   AL +      +++  I +      VLA L       
Sbjct: 13  VAVVFGGRSSEHAISCVTAGSVLDALRNGPEPQRYEIVPIGIASDGRWVLADLPDGGDLN 72

Query: 51  --------PDLAFNV----------------------------------------LHGNF 62
                   P++                                            LHG +
Sbjct: 73  LAITDGRLPEIGLPASAERANLVTMAGDPTARELTVHEPGAVPKSLGEVDVVLPLLHGPY 132

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ- 121
           GEDG +Q +LEL  +PY  SG+LASA+SMDK   K++++  G  V P  +V      ++ 
Sbjct: 133 GEDGTLQGLLELAGVPYVGSGVLASAVSMDKEFMKRLLAQAGFEVGPYEVVRPRDWGTEE 192

Query: 122 ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP + GSS+GI  +   + +   +   ++  H  ++L+E  +
Sbjct: 193 GRAAVRLAVEELGYPVFVKPARAGSSMGITKVDAPEELDQAI--DAARRHDPKVLVEAAI 250

Query: 173 DGIELTCGVMGDASLDVTE--------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +G E+ CGV+  A                     FY ++ KY   ++   +PA++  +  
Sbjct: 251 EGREIECGVLEGAGPQDPAEASLPAELRVTGPHAFYDFQAKYLDGSTEVDIPARLSAEEI 310

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLS----RKVFWLEINVQPGMTPVSIFPEMAAY 280
           ++++  A    + +GC G++R DF +   +     +    EIN  PG TP S+FP+M   
Sbjct: 311 EDIRGQAVGVFETLGCEGLARVDFFYQESADGGPGRFIVNEINTMPGFTPTSMFPQMWQA 370

Query: 281 AGYSFRELLLWMVEDA 296
           AG S+ EL+  +++ A
Sbjct: 371 AGLSYPELIARLIDTA 386


>gi|311113810|ref|YP_003985032.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
 gi|310945304|gb|ADP41598.1| D-alanine-D-alanine ligase [Rothia dentocariosa ATCC 17931]
          Length = 374

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 87/360 (24%), Positives = 148/360 (41%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A+L GG SSE  +SL +      A++ + + V  I + +     L +L+          
Sbjct: 10  VALLCGGRSSEHPISLITAVGVLGAIDSSVYDVVTIGITKDGRWYLTNLEELSALLDAAP 69

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F ++HG FGEDG +Q +LE
Sbjct: 70  AHAEFTGGSHQVFLPLGAGDSRVHLVDADGNLEYGPALDVVFPLIHGPFGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------IS 125
           L E+PY   G+ ASA+ MDK   K    S G+ V    +V       +          + 
Sbjct: 130 LAELPYVGCGVTASAVGMDKHFMKVAFESAGLEVGSYEVVTDRQWTHEREESLKRITALG 189

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS GI  + K + +   + ++    H  ++++E  + G E+ CGV+   
Sbjct: 190 YPMFVKPTRAGSSFGITKVDKFEELVPAIEEAR--RHDAKIIVEAGIVGREIECGVLDGH 247

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236
             ++   + P       E                     PA +P D+ + ++ LA  A  
Sbjct: 248 HGNMPRASYPGEIEVVDEDHGFYDFDAKYISKSSAVTRCPADLPKDMQERLRALAVKAFL 307

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+   G+SR+DF + P   ++   E+N  PG TP+S++  M    G S+ EL+  ++  A
Sbjct: 308 ALDGEGLSRADFFYTP-DGRLVINEVNTMPGFTPISMYKTMWENTGISYTELIDELLTLA 366


>gi|327468992|gb|EGF14464.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK330]
          Length = 353

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGAFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 REELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|2833428|sp|Q47827|DDL_ENTHR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244574|gb|AAB17904.1| D-alanine:D-alanine ligase [Enterococcus hirae]
          Length = 358

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S+E +VS+ S  +  +A+    ++V  I + +    V   L   KP      
Sbjct: 3   ITLLYGGRSAEHDVSVLSAFSVLNAIYYTYYQVQLIFISKEGQWVKGPLLTEKPTSKEDL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLTWDPSGKVTDGFTGRVINPGEIKEEGTIVFPVLHGPNGEDGTIQGFLETLNLPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKIFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKAENREELQNALALAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA++P ++Y++ Q  A +A+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNKIEMQIPAEVPEEVYQKAQEYAKIAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNTMPGFTQFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|324993372|gb|EGC25292.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK405]
 gi|327458730|gb|EGF05078.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1057]
          Length = 353

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEVAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|322392710|ref|ZP_08066170.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
 gi|321144702|gb|EFX40103.1| D-alanine-D-alanine ligase [Streptococcus peroris ATCC 700780]
          Length = 347

 Score =  157 bits (396), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 95/335 (28%), Positives = 157/335 (46%), Gaps = 43/335 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + +L GG S+ER+VS+ S ++   A+    F V    + +S    +   + D        
Sbjct: 5   IILLYGGRSAERKVSVLSAESVMRAVNYDHFTVKTFFISQSG-DFIKTQEFDQTPSQDER 63

Query: 53  -----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                  + F VLHG  GEDG VQ  LE+L++PY    IL+S+L
Sbjct: 64  LMTNETIDWDQKIAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSL 123

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIV 143
           +MDK+ +K+V+ S G+   P + +           + +  ++ P   KP   GSS+GI  
Sbjct: 124 AMDKITTKRVLESAGIAQVPYVAIVEGDDLVSKIAEVEEKLNYPVFTKPSNMGSSVGISK 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYS 201
            +    +   L  +    +  ++L+EQ V+  E+  G++G+  +  +     V    FY 
Sbjct: 184 SENQAELRQALDLAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSSLPGEVVKDVAFYD 241

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PAK+  D+   +++ A  A +AIG  G+SR DF +     +VF  E
Sbjct: 242 YEAKYIDNKITMDIPAKLSDDVIATMRKNAETAFRAIGGLGLSRCDFFYTDK-GEVFLNE 300

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T  S++P +    G  + EL+  +VE A
Sbjct: 301 LNTMPGFTQWSMYPLLWDNMGIPYPELIERLVELA 335


>gi|327194156|gb|EGE61024.1| D-alanine-D-alanine ligase protein [Rhizobium etli CNPAF512]
          Length = 358

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 148/350 (42%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL    +    I + R    +L+             
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMRALAPEKYDAVPIFISREGQWLLSSFVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG +GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGRGRMMAIPTGGTPHDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ V      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTVRADAAPSLATLESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q     L ++    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLEDAAGDLFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA++P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G S+ E++  +V+   A   R
Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMARAGR 356


>gi|306830913|ref|ZP_07464075.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
 gi|304426936|gb|EFM30046.1| D-alanine-D-alanine ligase [Streptococcus gallolyticus subsp.
           gallolyticus TX20005]
          Length = 348

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 89/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+EREVS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+   +         +   +    ++ P  +KP   GSS+GI    
Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKAD 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            ++ +   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|326802988|ref|YP_004320806.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326650248|gb|AEA00431.1| D-ala D-ala ligase N-terminal domain protein [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 356

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 74/340 (21%), Positives = 140/340 (41%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E ++S+ + ++    +      +  + + ++   +               
Sbjct: 3   IVLLYGGQSAEHDISIMTAQSIIKHINYQKHTLLPVYISQANQWIKGPAIDRAPEADLPL 62

Query: 46  -----LAHLKPD----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                L    P+                +AF  LHG  GEDG +Q + E L +PY  +G+
Sbjct: 63  RFNPELDANDPEHGDLVSPCQVFNGEEVIAFPALHGPHGEDGKIQGLFESLNVPYVGAGV 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKG 135
           L+SA  MDK+ SKQ+     +P  P   +  +  D +           +  P  +KP   
Sbjct: 123 LSSAAGMDKIISKQLFQQAQIPQVPFTALTHYEWDQERAKSLTRIEGELVYPIFVKPANL 182

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI      + +   +  + +++    +        +E+           V    V 
Sbjct: 183 GSSVGISCANDREELIQAIELAFNYDRRVIVEQGVEAREVEVAVLGNDAIETSVAGEVVK 242

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              FY+YE KY +      +PA +P +I  +++  A  A+ AI   G++R DF     + 
Sbjct: 243 SKSFYNYEEKYINNTVELAIPADLPGEIMDKIRAYAAKAYAAIDSSGLTRVDFFVT-HNM 301

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++  E+N  PG T  S++P +    G  + +LL  +++ 
Sbjct: 302 DIYINEVNTMPGFTQWSMYPSLWEATGIPYDQLLERLIQL 341


>gi|323352703|ref|ZP_08087673.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
 gi|322121739|gb|EFX93485.1| D-alanine-D-alanine ligase [Streptococcus sanguinis VMC66]
          Length = 353

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSQKIKPSDIYEDGTVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|325690163|gb|EGD32167.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK115]
          Length = 353

 Score =  156 bits (395), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|325694085|gb|EGD36003.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK150]
          Length = 353

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEANPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A +A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEVAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|332521353|ref|ZP_08397809.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
 gi|332043081|gb|EGI79279.1| D-alanine/D-alanine ligase [Lacinutrix algicola 5H-3-7-4]
          Length = 317

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 78/318 (24%), Positives = 139/318 (43%), Gaps = 30/318 (9%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVGLVL- 46
           MGG SSE ++SL SG    + L    +   +I +                 D++   VL 
Sbjct: 1   MGGYSSEYQISLKSGNVVYNTLNKEKYNAYRIHIFENKWVYVDANDKEYAIDKNDFSVLV 60

Query: 47  --AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q+  +L+ +P T      +AL+ +K     V+   G
Sbjct: 61  NETKITFDCVFNAIHGSPGEDGFMQSYFKLINLPQTSCDAYQAALTFNKRDCLSVLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N   + ++  I      P  +K  K GSS GI  + + + +   +  +   
Sbjct: 121 ILTAESYYLNLGDIINEDQIINKVGLPCFVKANKAGSSFGISKVHEKEKLNAAIDIAF-- 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVLPAK 218
              ++++IE ++DG E++ GV+                   +    +     S  + PA+
Sbjct: 179 KEDNEIIIESFLDGTEVSVGVITYKGETKVLPITEIVSENDFFDYEAKYLGKSQEITPAR 238

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  +   +V  +A   +  +  +G +RS+F+F     +   LE+N  PG+T  SI P+ A
Sbjct: 239 ITKEQENKVTTVAKKIYNVLKMKGYTRSEFIF--KDGEPHLLEMNTIPGLTNESILPQQA 296

Query: 279 AYAGYSFRELLLWMVEDA 296
           A AG +   L    +E+A
Sbjct: 297 AEAGITMEALFDSAIEEA 314


>gi|325697104|gb|EGD38991.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK160]
 gi|327473367|gb|EGF18787.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK408]
          Length = 353

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 159/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG------------------- 43
           +L GG S+EREVS+ S ++   A+    F V    + +                      
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 44  ----LVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                +   +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDISQKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGENLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPDEVVSLMRQNAEAAFRALGGLGLSRCDFFYVE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|294617801|ref|ZP_06697414.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
 gi|291595941|gb|EFF27221.1| D-alanine--D-alanine ligase [Enterococcus faecium E1679]
          Length = 358

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 87/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S +P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSTYPLLWENMGLKYGDLIEELIQL 342


>gi|187251497|ref|YP_001875979.1| D-alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
 gi|186971657|gb|ACC98642.1| D-Alanine/D-alanine ligase [Elusimicrobium minutum Pei191]
          Length = 353

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 76/339 (22%), Positives = 136/339 (40%), Gaps = 41/339 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVS+ S       L    + V  I + +                    
Sbjct: 6   IAVVYGGKSVEHEVSVHSAADVCGIL-SKKYNVINIFISKEGLWFAQEKCGPAQPSDINV 64

Query: 49  -----------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                            +  D+ F VLHG  GEDG +Q + EL+E PY   G++ASA+ M
Sbjct: 65  TPVFSNDCMFQTADGGTISADVLFPVLHGTKGEDGCIQGLFELMETPYVGCGVMASAIGM 124

Query: 92  DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK  SK + +  GVP  P I         +        +  P  +KP+  GSS+GI  +K
Sbjct: 125 DKEVSKVLAAYAGVPTLPYITFKKGDSVTKDFKAKTAKLGYPVFVKPVNLGSSIGITKVK 184

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++  +   +  +  +++   +                   + + +       + + +   
Sbjct: 185 EEAFLEKAIEFALKFDNDILIEKGVQSPKEIFCAVCGEGNNTESSSCGELIPNGHEFFDY 244

Query: 206 YSSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +S     +      PA +  +  K +Q+ + +  +     G +R DFL      ++++ E
Sbjct: 245 HSKYIDPNGCTVKVPASVSEEEDKLMQKYSRMIFKVFKACGFARVDFLL-GKDGQIYFSE 303

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           IN  PGM+  S+FP++   AG  + ++L  ++  A   R
Sbjct: 304 INTLPGMSNASLFPQLWRAAGKKYEDVLDTLINLALKRR 342


>gi|116252548|ref|YP_768386.1| D-alanyl-alanine synthetase A [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115257196|emb|CAK08291.1| putative D-alanine--D-alanine ligase A [Rhizobium leguminosarum bv.
           viciae 3841]
          Length = 358

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 85/350 (24%), Positives = 152/350 (43%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E +VS+ S      AL+   +    + + R    +L+             
Sbjct: 10  IAVLFGGRSAEHDVSVLSATNVMGALKPEKYDAVPVFITREGQWLLSSFEDGILATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG +GEDG VQ   E+  +P    G
Sbjct: 70  TEICLVPGGRGRMLAIPAHGAPHDLAKVDILFPVLHGQYGEDGSVQGAAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++   + S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIHEGAVPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q +   L ++    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEVAPALAEAF--RHDRTLLAEEFVRGREIEFSVLEDAAGELFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA++P ++   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYSYDAKYIDEKGAALKVPAELPQEVETAMRDVAAKAFRAVGCDGMARIDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G ++ E++  +V+   A   R
Sbjct: 307 DDMQFLVNEINTIPGFTDISMYSKAMAASGVTYAEIIDRLVDHGMARARR 356


>gi|741411|prf||2007289B D-Ala D-Ala ligase
          Length = 348

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|168334521|ref|ZP_02692682.1| D-alanine--D-alanine ligase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 349

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 153/345 (44%), Gaps = 53/345 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG SSE EVSL S       ++   F +  + + +    +L                
Sbjct: 7   LIFGGQSSEHEVSLKSVTTIYENIDHELFDIYPVGITKEGKWLLYRGAXFNFTENNWQEK 66

Query: 49  -----LKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                L PD+                      F ++HG +GEDG +Q +  L ++P+   
Sbjct: 67  GVPCILSPDVTHHGLLLLRDAQDIVNIKINKVFPIMHGKYGEDGTIQGLCTLAQLPFVGC 126

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPPYVIKPLK 134
           G+L+SA+SMDK  +K  V   G+     +         +N+     +     PY +KP  
Sbjct: 127 GVLSSAISMDKSFTKIAVEKTGIRQAKYVLVKSSELKHMNQVVSKIEETFGYPYFVKPAN 186

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI  +   + +   L  ++      ++L+E+ + G E+   V    +  +     
Sbjct: 187 AGSSVGINKVHNKRELEHALRVAA--KEDAKILVEETIIGREVEVAVLGNEELQISGVGE 244

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            +  ++FY ++ KY++  S  V+ A++P +I + ++  A   ++A+  +G+SR DF    
Sbjct: 245 ILAAAEFYDFDAKYNNAESKTVICAELPDEIKENLREAAKKIYKAVDAKGLSRVDFFVTE 304

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            +  + + EIN  PG T +S++P +    G S + L+  ++  AS
Sbjct: 305 -TGDMIFNEINTMPGFTKISMYPMLFEDFGISIKNLITELINLAS 348


>gi|295090181|emb|CBK76288.1| D-alanine--D-alanine ligase [Clostridium cf. saccharolyticum K10]
          Length = 387

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/344 (25%), Positives = 155/344 (45%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S E  VSL S  A  S ++   +    I + +S    L              
Sbjct: 44  IAVIFGGCSPEYSVSLQSAYAVISHMDTEVYTPVLIGISQSGDWFLYEGDIEKIVSDTWC 103

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D AF VLHG  GEDG +Q + E+  IP 
Sbjct: 104 GGKDCTPVVVSPNRTSHNLLLLENGKVKKLHIDAAFPVLHGRNGEDGTIQGLFEMAGIPV 163

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLK 134
              G+L+SAL MDK R+ ++V + G+ V  S ++ +             I  P  +KP+K
Sbjct: 164 VGCGVLSSALCMDKDRAHKLVHTAGIAVPSSFVLGKSASVATALQQAEKIGYPLFVKPVK 223

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS GI  +     +P  L  +    +  ++++E+ + G E+ C +    D ++   + 
Sbjct: 224 AGSSFGITKVSSSNELPAALELAF--EYDKRVIVEECISGFEVGCAILGDEDLTVGEVDE 281

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 F+++  KY+   S   +PA+IP +  +++++ A   ++ + C+G +R D    P
Sbjct: 282 IELSGGFFNFTEKYTLKTSAIHVPARIPQNTAEQIKQAAKTIYRTLDCQGFARVDLFLTP 341

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S ++ + E+N  PG T  S +P M   AG++F +++  ++E A
Sbjct: 342 -SGEIVFNEVNTIPGFTTHSRYPNMMKAAGFTFEQIVSALIEQA 384


>gi|255994688|ref|ZP_05427823.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
 gi|255993401|gb|EEU03490.1| D-alanine--D-alanine ligase [Eubacterium saphenum ATCC 49989]
          Length = 359

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 81/329 (24%), Positives = 146/329 (44%), Gaps = 37/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E E+S  S    A  L +   +V  I +D+S                   
Sbjct: 11  VAVIFGGRSPEHEISCISAGFIAKGLREIFGRVVNIYIDKSGNWHRVDDGIIDFTKLDVK 70

Query: 52  ---------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                          D+ ++VLHG +GEDG +Q + E+ ++PY    + ASA++MDK+ +
Sbjct: 71  NEAESCTIEQCLTDVDIVWSVLHGPYGEDGKIQGLFEMYDVPYVGCNVTASAIAMDKVIA 130

Query: 97  KQVVSSCGVPV--------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K V    G+                    ++    +  P  +KP   GSS+GI     ++
Sbjct: 131 KNVFEHAGLKTVKYELLLEKEYRDDEERELERIEKLGFPMFVKPANMGSSVGISKATDEK 190

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   +  +    +  +L+IE+ + G E+   V G+   + +     +     Y++    
Sbjct: 191 KLKKAIEDAFQ--YDYRLIIEENIIGKEVEVAVFGNGPYEASVAGEIRPRAEFYDVDAKY 248

Query: 209 L---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  ++PA I  +  K +Q  A +A +AI C+GI R D      S ++F  E+N  
Sbjct: 249 HSGGDTAIIIPADISEEQMKMLQEEAKIAARAIDCKGICRVDSFIKADSNEIFINEVNTM 308

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           PG T +S++P++   +G S +ELL  ++ 
Sbjct: 309 PGFTEISMYPKLWEVSGISNKELLERIIN 337


>gi|153816394|ref|ZP_01969062.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|317500748|ref|ZP_07958965.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089774|ref|ZP_08338668.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
 gi|145846282|gb|EDK23200.1| hypothetical protein RUMTOR_02646 [Ruminococcus torques ATCC 27756]
 gi|316897841|gb|EFV19895.1| D-alanine-D-alanine ligase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403657|gb|EGG83212.1| hypothetical protein HMPREF1025_02251 [Lachnospiraceae bacterium
           3_1_46FAA]
          Length = 350

 Score =  156 bits (395), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 159/351 (45%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICRTLIEKGHDAFLLDVFLGLEHAPEHLEDVFTLPGHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISCEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYV 129
           +LL I YT    L  A++MDK  +KQV    G+     + +++ + D    ++    P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGLTKQVFLQAGIDTPAGVTIHKKSKDRSLALTGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP  GGSS+G+ ++  ++     L +S    + D++++E+Y+ G E  CGV+ + +L  
Sbjct: 183 IKPCSGGSSIGVYIVSTEEEYAEALEKSFF--YEDEVVVEEYIKGREFACGVIDNEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY +  +  V PA IP +    +  L   A +A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQADATLEVCPADIPEETASRMMELTVKAFRALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDEKGN-LYCLEMNTLPGMTAASLLPKEAKAAGIEYGDLCELIIKKSLEAR 349


>gi|255100754|ref|ZP_05329731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-63q42]
          Length = 366

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 69/360 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E +VSL S  A    L    + +  I + R                    
Sbjct: 6   IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65

Query: 45  -------------------VLAHLKPDLA-------------------------FNVLHG 60
                              ++  L PD                           F VLHG
Sbjct: 66  ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+ V  SIL+      +
Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG E
Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243

Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           + C V    D  +   +       F+ Y  KY+  +S   +PA+I LD  K +Q  A + 
Sbjct: 244 VGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GC G +R D    P S ++ + E+N  PG T  S +P M    G SF E+L  ++E
Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362


>gi|312863893|ref|ZP_07724131.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
 gi|311101429|gb|EFQ59634.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           vestibularis F0396]
          Length = 348

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPSDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +                 ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 EAELHAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|124023693|ref|YP_001018000.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9303]
 gi|166198499|sp|A2CB75|DDL_PROM3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123963979|gb|ABM78735.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9303]
          Length = 353

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 86/344 (25%), Positives = 145/344 (42%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + V+ GG S E  VS+ S      AL        F+V  I +D+            VL  
Sbjct: 8   VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +P                          + + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  GQPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKP 132
           +L SALSMDK+  K   ++ G+P  P   V+               + +  +  P  +KP
Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYFAVDAADLLDTESRQGVAKNLEAKLKYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    + + L +++S +    +        +E       +    V   
Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDRRIVVEQGVSARELECAVLGKRELQTSVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y Y+ KYS   S  ++PA +P  +  +++ LA  A + +   G++R DF ++ 
Sbjct: 248 ICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFYNA 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +++  EIN  PG T  S++P +   +G +  EL+  +V  A
Sbjct: 308 ARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351


>gi|254975259|ref|ZP_05271731.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-66c26]
 gi|255092649|ref|ZP_05322127.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CIP 107932]
 gi|255314386|ref|ZP_05355969.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-76w55]
 gi|255517064|ref|ZP_05384740.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-97b34]
 gi|255650168|ref|ZP_05397070.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-37x79]
 gi|260683291|ref|YP_003214576.1| putative D-alanine:D-alanine ligase [Clostridium difficile CD196]
 gi|260686887|ref|YP_003218020.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile R20291]
 gi|260209454|emb|CBA62964.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile CD196]
 gi|260212903|emb|CBE04146.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile R20291]
          Length = 366

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 101/360 (28%), Positives = 156/360 (43%), Gaps = 69/360 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E +VSL S  A    L    + +  I + R                    
Sbjct: 6   IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65

Query: 45  -------------------VLAHLKPDLA-------------------------FNVLHG 60
                              ++  L PD                           F VLHG
Sbjct: 66  ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+ V  SIL+      +
Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG E
Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243

Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           + C V    D  +   +       F+ Y  KY+  +S   +PA+I LD  K +Q  A + 
Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GC G +R D    P S ++ + E+N  PG T  S +P M    G SF E+L  ++E
Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362


>gi|302531349|ref|ZP_07283691.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
 gi|302440244|gb|EFL12060.1| D-alanine-D-alanine ligase B [Streptomyces sp. AA4]
          Length = 316

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 97/313 (30%), Positives = 154/313 (49%), Gaps = 20/313 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRAEGLTVEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GE+G VQ +LE+L++P+  +       + DK  +K  V   G      I++   T   
Sbjct: 66  GEGENGSVQTVLEMLDVPFVGTHSQGCRRAWDKPTAKAFVQQAGFSTPDWIVLPHSTFRE 125

Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V+++   +P  +     + +GD +L E+
Sbjct: 126 LGAQSVLDAMVERLGLPLILKPDQGGSALGTQVVREAAELPAAM--VGCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +VDG+E+   V+   +          VP+S  Y Y  +Y++  +    PA+I  +  K V
Sbjct: 184 FVDGVEVAVTVIEGENGAEALPAVEIVPESGVYDYTARYTAGLTDFFTPARISDEAAKAV 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS--- 284
             LA  AH+ +G R ISR+D +  P    V +LE+N+ PG+T  S  P     AG +   
Sbjct: 244 SELAVGAHRWLGLRDISRTDAVITP-DGGVHFLEVNLSPGLTETSTVPMAVEAAGTTLGS 302

Query: 285 -FRELLLWMVEDA 296
            F +L+   V  A
Sbjct: 303 VFADLVARAVARA 315


>gi|329117509|ref|ZP_08246226.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
 gi|326907914|gb|EGE54828.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parauberis NCFD 2020]
          Length = 348

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPD------ 52
            +L GG S+EREVS+ S ++   A+    F V    + +            KPD      
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQVGDFYKTQELSQKPDDNEKLM 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNQSIEQSQLIKASDIYEENAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V++S G+P     +                 +  P  +KP   GSS+GI   +
Sbjct: 127 DKITTKHVLASAGIPQVAFTVYIEGNDLDACMSETMEKLQFPIFVKPANMGSSVGISKAE 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
            +  +   +  +    +  ++LIEQ V   E+  G++G+ S+  T     V    FY Y+
Sbjct: 187 TEMELKEAIGLAL--KYDSRILIEQGVVAREIEVGLLGNNSVKSTFPGEVVKDVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA+I  +I KE++  A  A +A+G  G+SR DF        ++  E+N
Sbjct: 245 AKYIDNKITMAIPAEIDSEIVKEMRAYAEAAFKALGGCGLSRCDFFLTE-DGHMYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G  + +L+  +V+ A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLVYSDLIEELVKLA 336


>gi|319951163|ref|ZP_08025008.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
 gi|319435179|gb|EFV90454.1| D-alanyl-alanine synthetase A [Dietzia cinnamea P4]
          Length = 368

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/366 (24%), Positives = 149/366 (40%), Gaps = 71/366 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG SSE  VS  S  A    L+ + ++V  + +  +    L              
Sbjct: 6   VAVLYGGRSSEHSVSCVSAGAVMGHLDRSRYEVIPVGITEAGAWTLGSDDTADLRIADRI 65

Query: 47  ---------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILE 73
                                               + D+ F V+HG   EDG +Q +LE
Sbjct: 66  MPVVDAGRPRVALGLSTDDRGVLRFADGDRAGQEIARVDVVFPVMHGTHAEDGTIQGLLE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYV 129
           L  IPY   G+ ASA  MDK  +K V+ + G+P+   +++   T       +  +  P  
Sbjct: 126 LSGIPYVGPGVFASAAGMDKEFTKVVLGAAGLPIGRQVVLRPGTATLSPADRDRLGLPLF 185

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------- 179
           +KP +GGSS+GI  + +   +   + ++      +++++E  + G E+ C          
Sbjct: 186 VKPARGGSSIGITKVSRAADLDAAIAEAR--RFDEKVIVEAAIVGREIECGVLEYPDGRV 243

Query: 180 ------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  +         E       FY ++ KY    +T  LPA +P +  ++++ LA  
Sbjct: 244 EASLPAELHIPGEPTGVEGETEGDAFYDFDTKYLDDVTTFDLPADLPAEQTEQLRTLAVE 303

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A  A+  RG+SR DF            E+N  PG TP+S++P+M A  G  +  LL  ++
Sbjct: 304 AFHALDARGLSRVDFFVTAEG--PVINEVNTMPGFTPISMYPQMWAATGVDYESLLDTLI 361

Query: 294 EDASCL 299
             A   
Sbjct: 362 RTAIAR 367


>gi|229820087|ref|YP_002881613.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229566000|gb|ACQ79851.1| D-alanine/D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 372

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 89/363 (24%), Positives = 146/363 (40%), Gaps = 67/363 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ GG S E  VS ++      A++   + V  + + RS   VLA             
Sbjct: 8   VAIVFGGRSGEHAVSAATAAGVLGAIDRGKYDVVPVGITRSGEWVLAADDAGALEIRDGH 67

Query: 49  -----------------------------------LKPDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q +LE
Sbjct: 68  VPEVDATGDGRLLVPFGSGPAQLVVLSPGAPPNELAGVDVVLPLLHGPFGEDGTIQGMLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------- 126
           L  +PY  SG+LASA  MDK   K V++  G+PV P  ++                    
Sbjct: 128 LAGVPYVGSGVLASAAGMDKHYMKVVLAGAGLPVGPYTVLTPSAWRRDRAACLDQVASLG 187

Query: 127 -PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP + GSS+GI  ++    +   + ++    H  ++++E  + G E+   V+   
Sbjct: 188 LPVFVKPARAGSSIGITRVESLDRLVEAIEEAQ--RHDPKVIVEAAITGREIEVAVLEGR 245

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQ 236
             +     +P     +                       PA +P  +  E +RLA  A  
Sbjct: 246 GDEPPRTTMPGEIVVTNAEHGFYDYEAKYFDSAGVDLRCPADLPPGVADEARRLAAEAFD 305

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GC G++R DF + P S  +   EIN  PG TP S+FP +   +G ++ EL+  +++ A
Sbjct: 306 ALGCEGLARVDFFYTP-SGTLVVNEINTMPGFTPFSMFPLLWERSGVAYPELIDELLQLA 364

Query: 297 SCL 299
              
Sbjct: 365 LAR 367


>gi|254967070|gb|ACT97573.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 352

 Score =  156 bits (394), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 99/351 (28%), Positives = 157/351 (44%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG+S+ER+VSL+S       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLASAAGICRTLLERGHDAFLLDVFLGLENAPEDLEDVFTMPGHGL 62

Query: 41  SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +   ++  +PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISEEEPDLAAVKASRPDQSDCFLGPNVIELCRLADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYV 129
           +LL I YT    L  A++MDK  +KQV    G+     + +++   D       +S P V
Sbjct: 123 DLLGIRYTGPDSLGCAVAMDKGFTKQVFLQAGIDTPDGVCLHKNDADRSLASLGLSLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  +      L +S    + D+++IE ++ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTEDEYKDALEKSF--RYEDEIVIETFIKGREFACGIIDGEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY    +  V PA IP DI + +  L   A  A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQDGATDEVCPADIPKDIEERMMELTVRAFHALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDDQ-GSLYCLEMNTLPGMTAASLLPKEAKVAGIEYGDLCELIIQKSIEAR 349


>gi|257126515|ref|YP_003164629.1| D-alanine--D-alanine ligase [Leptotrichia buccalis C-1013-b]
 gi|257050454|gb|ACV39638.1| D-alanine/D-alanine ligase [Leptotrichia buccalis C-1013-b]
          Length = 308

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 152/302 (50%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V    ID ++ V   +  L  D  +  L
Sbjct: 6   VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEKEVFEKVKELNLDFVYIAL 65

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +       +   
Sbjct: 66  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 125

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +    V+KP  GGSS+G+  ++  + +   L          + LIE+ + G
Sbjct: 126 VDFETIKKELGNRVVVKPNSGGSSIGVSFVENQEELEKGLELVFGM--DKEALIEEVLHG 183

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E++  V+         I     D++ YE KY+   +   +  + P ++  E+ + A  +
Sbjct: 184 VEISVPVIDGKVFPTIRIEALAGDYFDYESKYAKGGANEYV-FEFPEEVQAEINKFAKDS 242

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  ++E
Sbjct: 243 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYAQTLDLLIE 301

Query: 295 DA 296
            +
Sbjct: 302 SS 303


>gi|295836324|ref|ZP_06823257.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
 gi|197699329|gb|EDY46262.1| D-alanine-D-alanine ligase [Streptomyces sp. SPB74]
          Length = 389

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 149/362 (41%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS+ +  A    ++   + V  I +       LA  +P         
Sbjct: 24  VAVVFGGRSSEHGVSVVTAGAVLGVIDREKYDVLPIGITGEGRWALAADEPARMAITDRS 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F +LHG +GEDG +Q 
Sbjct: 84  MPTVESLAESLEGSVVLPFDPSVREVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL   PY  +G+LASA+  DK   K++ +S G+ V P +++                 
Sbjct: 144 LLELSGTPYVGAGVLASAVGQDKEYMKRIFTSFGLAVGPYLVIRPREWEQDPEAARRRIA 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +   + +   + ++    H  + LIE  V G E+ 
Sbjct: 204 DFAGDHGWPLFVKPARGGSSVGISKVDGFEGLDEAIEEAR--RHDPKFLIEALVQGREIE 261

Query: 179 C---GVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           C            +     P +D   Y        +++ ++PA +  +   EVQRLA  A
Sbjct: 262 CGVLEFEDGPRASLPAEIPPVTDHAYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            E+N  PG TP+S++P+M   +G  + EL+  +++
Sbjct: 322 FEATSCEGLVRADFFLT--DDGFVINEVNTMPGFTPISMYPQMWEKSGVGYAELVDRLIQ 379

Query: 295 DA 296
            A
Sbjct: 380 AA 381


>gi|257083761|ref|ZP_05578122.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
 gi|256991791|gb|EEU79093.1| D-alanine:D-alanine ligase [Enterococcus faecalis Fly1]
          Length = 356

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  YLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|154267923|gb|ABS72058.1| D-alanine:D-lactate ligase [Ruminococcus gauvreauii]
          Length = 343

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 143/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S                   
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 45  -------------VLAHLK------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                        ++   K       D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDKGYEIQPVDVVLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           K + +   + ++    +  ++LIE+ V G E+ C ++G+ +  +          + +   
Sbjct: 186 KAEELQAAIEEAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVRERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  E+L  ++E +
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340


>gi|33862595|ref|NP_894155.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9313]
 gi|39930843|sp|Q7V8L9|DDL_PROMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33634511|emb|CAE20497.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9313]
          Length = 353

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 142/344 (41%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLA--------- 47
           + V+ GG S E  VS+ S      AL        F+V  I +D+      A         
Sbjct: 8   VGVVFGGASEEHAVSIRSAITVVGALRSEVNNNRFEVIAIYIDQRGRWWPAGVAEAVLKQ 67

Query: 48  ------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     +  + + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  GHPAKPEQLSTPLAPQGFTKLPEGSERVQVWYPVLHGPNGEDGTVQGLFTLMGQPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKP 132
           +L SALSMDK+  K   ++ G+P  P   V+                 +  +  P  +KP
Sbjct: 128 VLGSALSMDKLAMKAAFAAAGLPQVPYAAVDAADLLETESRQGVAKHLEAKLKYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    + + L +++S +    +        +E       +    V   
Sbjct: 188 ANLGSSVGISKAQNRNELLIGLDKAASLDRRIVVEQGVSARELECAVLGKRELQTSVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y Y+ KYS   S  ++PA +P  +  +++ LA  A + +   G++R DF ++ 
Sbjct: 248 ICFDADWYDYDTKYSENCSHTLIPAPLPEGVEAQIRTLALQACRCVAAHGMARVDFFYNA 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +++  EIN  PG T  S++P +   +G +  EL+  +V  A
Sbjct: 308 ARNEIWLNEINTLPGFTSQSMYPMLWEASGVTLEELVSQLVITA 351


>gi|328947388|ref|YP_004364725.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
 gi|328447712|gb|AEB13428.1| D-alanine--D-alanine ligase [Treponema succinifaciens DSM 2489]
          Length = 376

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 92/362 (25%), Positives = 159/362 (43%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S  +    +  A   VS I + +     L              
Sbjct: 3   VVLIYGGKSGEHEISLLSCASVIRNI-SAKHNVSLISISKGGKWYLEDDSVFKEIRNNPE 61

Query: 49  -------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                          +  D+ F VLHG +GEDG VQ + E+  +
Sbjct: 62  AALCVHENESREVKVSFGRGKDNVFFACGNYIPCDVVFPVLHGTYGEDGTVQGVFEMAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISP 126
           P+   G+LAS+ +MDK  +K ++ + G+PV P + ++R  ++S              +  
Sbjct: 122 PFVGCGVLASSAAMDKETTKILLKNAGIPVVPYMCISRSQINSSSLYDKLIEEAIEKLEF 181

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV----- 181
           P  +KP   GSS G  + +  + +   L+++ SW   +++LIE+ +D  E+ C V     
Sbjct: 182 PLFVKPCAAGSSDGASLARNKRELSFALMEAFSW--DNKVLIEKAIDAREVECSVTGNSV 239

Query: 182 -------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFL 233
                              VPK DFY Y+ KY+  +     +PA +  D  + ++  A  
Sbjct: 240 TATSESDCTLLKAYGPGEIVPKHDFYDYDAKYNDPDGAELKIPALLSDDKLELIRETAKK 299

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+  I   G+SR DF  D  + +++  EIN  PG T +S+FP+M    G  + EL+ +++
Sbjct: 300 AYSVINASGLSRVDFFVDRKTGEIYLNEINTIPGFTKISMFPKMCDADGLEYSELIDYLL 359

Query: 294 ED 295
           ++
Sbjct: 360 KE 361


>gi|154267916|gb|ABS72052.1| VanG-like protein [Ruminococcus gauvreauii]
          Length = 348

 Score =  156 bits (394), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 96/341 (28%), Positives = 153/341 (44%), Gaps = 51/341 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
           AV+ GG S+E  VSL S  +    +    ++V  I + R                     
Sbjct: 7   AVIFGGNSTEYGVSLQSAFSVLENVNQEKYEVIPIGITRQGSWYRYGGAYGKIPDDTWMR 66

Query: 45  -------VLAHLKP------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
                  V+ H  P                  DLAF VLHG  GEDG VQ +LEL  IP 
Sbjct: 67  DEKNLTPVVVHQNPAVHGILELSVWENRVTQLDLAFPVLHGKNGEDGTVQGLLELAGIPI 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKG 135
              G+LASAL MDK R+ ++  + G+ V  ++++ +             + P  +KP++ 
Sbjct: 127 VGCGVLASALCMDKDRAHRLAGAAGISVPKAVVLQKHQKCRAVVLPEDFTYPLFVKPVRA 186

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIA 193
           GSS GI  I  +  +   +  +    H D++++E+ VDG E+ C +  M   ++   +  
Sbjct: 187 GSSCGIAKIYGEGELDAAVSAAFC--HDDEVIVEENVDGFEVGCAILGMDVLTVGRVDEI 244

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +  KY+  +S   +PA+I     +++Q  A   +Q +GC G +R D    P 
Sbjct: 245 ELTGGFFDFTEKYALKHSRIHMPARIDAKTEQKIQETAKNIYQVLGCSGFARVDMFLTP- 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           S  V + E+N  PG T  S +P M    G SF +LL  +++
Sbjct: 304 SGDVVFNEVNTIPGFTAHSRYPNMMKGIGLSFEQLLERLLD 344


>gi|220901858|gb|ACL82961.1| VanM [Enterococcus faecium]
          Length = 343

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 78/338 (23%), Positives = 142/338 (42%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+L GG S E  VS+ S    A+ ++   ++   I + +S                   
Sbjct: 6   IAILFGGCSEEHNVSVKSAAEIANNIDIGKYEPIYIGITQSGVWKTCEKPCIDWDNEHCR 65

Query: 50  ------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                   + D+ F+VLHG  GEDG +Q + EL  IPY    I 
Sbjct: 66  SAVLSPDKKMHGLLIMQDKGYQIQRIDVVFSVLHGKSGEDGAIQGLFELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SA+ MDK  +  +  + G+      ++ +    +    + P  +KP + GSS G+  + 
Sbjct: 126 SSAVCMDKSLAYIIAKNAGIATPEFQVIYKDDKPAADSFTYPVFVKPARSGSSYGVNKVN 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  +    +  ++LIEQ V G E+ C V+G++   +          +     
Sbjct: 186 SADELDSAIDLARQ--YDSKILIEQGVLGYEVGCAVLGNSFDLIVGEVDQIRLQHGIFRI 243

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          N+T  +PA++  +  + ++  A   ++A+GCRG+SR D      + ++ 
Sbjct: 244 HQEAEPEKGSENATITVPAELSAEERERIKEAAKNIYKALGCRGLSRVDMFL-QDNGRIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG +  EL+  ++  A
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMVSAGITIPELIDHLIVLA 340


>gi|327461647|gb|EGF07978.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1]
          Length = 353

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 96/339 (28%), Positives = 160/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVRTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEKGVVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 QAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKIP ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKIPEEVVSLMRQNAEAAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|332687108|ref|YP_004456882.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
 gi|332371117|dbj|BAK22073.1| D-alanine--D-alanine ligase [Melissococcus plutonius ATCC 35311]
          Length = 356

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 153/343 (44%), Gaps = 51/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    + V  + + +    +   L   KP+     
Sbjct: 3   IILLYGGKSEEHDVSILSAYSILNAIYYEYYTVQLVLITKQGEWIKGPLLTEKPENKEIL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE + +PY  +G
Sbjct: 63  NLTGAKDENTMAYSSGTSIMPCEIFEKDAIVFPVLHGPNGEDGTIQGFLETISMPYVGTG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V +              +  +  P  +KP  
Sbjct: 123 VLASATAMDKIMTKYLLQTVGIPQTPYVPVLKNEWKNDSKQLFERCEGTLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS+GI  ++  + +   L  +    +  ++++EQ ++  E+   +    D    +   
Sbjct: 183 LGSSVGISKVENREELQKALELAY--KYDSRVIVEQGIEAREIEVAILGNEDVRTTLPGE 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V   DFY Y+ KY     +  +PA++P ++ ++ Q  A  A++ +   G+SR DF    
Sbjct: 241 VVKNVDFYDYQAKYVDNQISMKIPAELPAEVCRQAQEYAKKAYKTLDGSGLSRCDFFLT- 299

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 300 NKNELFLNELNTMPGFTEFSMYPSLWENMGLKYSDLIEELIQL 342


>gi|304383943|ref|ZP_07366400.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
 gi|304335021|gb|EFM01294.1| D-alanine-D-alanine ligase [Prevotella marshii DSM 16973]
          Length = 333

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 138/326 (42%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWRVNLPNGDVAPIDRNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + K    D A+  +HG  GE+GL+Q   ELL IPY+ SG+L  AL+ +K    Q +
Sbjct: 68  SFMENGKFMLFDYAYITIHGTPGENGLLQGYFELLHIPYSTSGVLVEALTFNKFVLNQYL 127

Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                     + V             +  I  P+ +KP   GSS G+  +K    +   L
Sbjct: 128 RGYGVSVAESILVRRGFEDQIDEKTIEEKIGLPFFVKPAADGSSFGVSKVKNIDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
             +      D+++IE Y+ G E++ G        V   A        +       +    
Sbjct: 188 RNAFM--ESDEVMIESYLKGTEISIGCYKTREKSVVLPATEVVTSNEFFDYDAKYNGQVQ 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMT 269
            + PA++  +  + V+++    +  + C GI R D++         K+  LE+N  PGMT
Sbjct: 246 EITPARLSEETAERVKQITHAIYDILHCNGIIRIDYIITKNEDGTEKINMLEVNTTPGMT 305

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG +  E+L  +VE+
Sbjct: 306 ATSFIPQQIRAAGLNITEVLTEIVEN 331


>gi|260434898|ref|ZP_05788868.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
 gi|260412772|gb|EEX06068.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 8109]
          Length = 350

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 145/341 (42%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLAHLK------ 50
           + ++ GG S E  VS+ S       L        + V  I +D         L       
Sbjct: 8   IGLVFGGRSGEHNVSIRSAATVVRGLRSGQNRKRYTVQPIYIDLEGRWWGTDLSEATLSS 67

Query: 51  ------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    DL + VLHG  GEDG +Q + +L   P+  +G+L 
Sbjct: 68  ETAPELNPPLPPSGFQGFPKGCDAVDLWYPVLHGPNGEDGTIQGLFQLTGKPFVGAGVLG 127

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKG 135
           SA+SMDK+  K   +S G+   P + ++                 +  ++ PY +KP   
Sbjct: 128 SAVSMDKLAMKSAFASAGLSQVPYVALHASELENAISRSALLDRIERELNYPYFVKPANL 187

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++  + +   L Q+++ +    +        +E            +      
Sbjct: 188 GSSVGISKVRSRKELEAGLDQAAALDPRLVVEQGVNAREVECAVLGGRMLEASLIGEVRF 247

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y YE KY++  ST ++PA +P ++   ++  A  A  A+G  G+ R DF +D  + 
Sbjct: 248 DADWYDYETKYTAGRSTTLIPAPLPDEVADRIRAQALQACAAVGVNGMGRVDFFYDDAND 307

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  EIN  PG T  S+FP + A +G +  +L+  +++ A
Sbjct: 308 QLWINEINTLPGFTAQSMFPMLWAASGVTVEQLVHKLIQTA 348


>gi|23328865|gb|AAC43218.2| D-alanine:D-alanine ligase-related protein [Enterococcus faecalis]
          Length = 348

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|29375431|ref|NP_814585.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
 gi|30179787|sp|Q47758|DDL_ENTFA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29342891|gb|AAO80655.1| D-alanine--D-alanine ligase [Enterococcus faecalis V583]
          Length = 348

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|257418442|ref|ZP_05595436.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|257160270|gb|EEU90230.1| D-alanyl-D-alanine ligase [Enterococcus faecalis T11]
 gi|315165081|gb|EFU09098.1| D-ala D-ala ligase [Enterococcus faecalis TX1302]
 gi|315167892|gb|EFU11909.1| D-ala D-ala ligase [Enterococcus faecalis TX1341]
 gi|315574117|gb|EFU86308.1| D-ala D-ala ligase [Enterococcus faecalis TX0309B]
          Length = 356

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 145/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|255971299|ref|ZP_05421885.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255973918|ref|ZP_05424504.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256617717|ref|ZP_05474563.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256761603|ref|ZP_05502183.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256854307|ref|ZP_05559671.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256957295|ref|ZP_05561466.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256959971|ref|ZP_05564142.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256964334|ref|ZP_05568505.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|257077731|ref|ZP_05572092.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|257086186|ref|ZP_05580547.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|257089258|ref|ZP_05583619.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257415411|ref|ZP_05592405.1| D-alanine:D-alanine ligase [Enterococcus faecalis AR01/DG]
 gi|293388801|ref|ZP_06633294.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294781259|ref|ZP_06746605.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300859798|ref|ZP_07105886.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|307275147|ref|ZP_07556299.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|307278459|ref|ZP_07559534.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|307290780|ref|ZP_07570675.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|312901617|ref|ZP_07760888.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|312907062|ref|ZP_07766058.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|312952886|ref|ZP_07771747.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|255962317|gb|EET94793.1| D-alanine:D-alanine ligase [Enterococcus faecalis T1]
 gi|255966790|gb|EET97412.1| D-alanine:D-alanine ligase [Enterococcus faecalis T2]
 gi|256597244|gb|EEU16420.1| D-alanine:D-alanine ligase [Enterococcus faecalis ATCC 4200]
 gi|256682854|gb|EEU22549.1| D-alanine:D-alanine ligase [Enterococcus faecalis T3]
 gi|256709867|gb|EEU24911.1| D-Ala ligase [Enterococcus faecalis T8]
 gi|256947791|gb|EEU64423.1| D-alanine:D-alanine ligase [Enterococcus faecalis DS5]
 gi|256950467|gb|EEU67099.1| D-alanine:D-alanine ligase [Enterococcus faecalis Merz96]
 gi|256954830|gb|EEU71462.1| D-alanine:D-alanine ligase [Enterococcus faecalis HIP11704]
 gi|256985761|gb|EEU73063.1| D-Ala-D-Ala ligase [Enterococcus faecalis JH1]
 gi|256994216|gb|EEU81518.1| D-alanine:D-alanine ligase [Enterococcus faecalis D6]
 gi|256998070|gb|EEU84590.1| D-alanine:D-alanine ligase [Enterococcus faecalis CH188]
 gi|257157239|gb|EEU87199.1| D-alanine:D-alanine ligase [Enterococcus faecalis ARO1/DG]
 gi|291081958|gb|EFE18921.1| D-alanine--D-alanine ligase [Enterococcus faecalis S613]
 gi|294451595|gb|EFG20051.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           PC1.1]
 gi|300850616|gb|EFK78365.1| D-ala D-ala ligase N-terminal domain protein [Enterococcus faecalis
           TUSoD Ef11]
 gi|306498161|gb|EFM67683.1| D-ala D-ala ligase [Enterococcus faecalis TX0411]
 gi|306504965|gb|EFM74160.1| D-ala D-ala ligase [Enterococcus faecalis TX0860]
 gi|306508175|gb|EFM77293.1| D-ala D-ala ligase [Enterococcus faecalis TX2134]
 gi|310627047|gb|EFQ10330.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 512]
 gi|310629189|gb|EFQ12472.1| D-ala D-ala ligase [Enterococcus faecalis TX0102]
 gi|311291305|gb|EFQ69861.1| D-ala D-ala ligase [Enterococcus faecalis TX0470]
 gi|315029213|gb|EFT41145.1| D-ala D-ala ligase [Enterococcus faecalis TX4000]
 gi|315032372|gb|EFT44304.1| D-ala D-ala ligase [Enterococcus faecalis TX0017]
 gi|315145187|gb|EFT89203.1| D-ala D-ala ligase [Enterococcus faecalis TX2141]
 gi|315158766|gb|EFU02783.1| D-ala D-ala ligase [Enterococcus faecalis TX0312]
 gi|315163095|gb|EFU07112.1| D-ala D-ala ligase [Enterococcus faecalis TX0645]
 gi|315174911|gb|EFU18928.1| D-ala D-ala ligase [Enterococcus faecalis TX1346]
 gi|315577245|gb|EFU89436.1| D-ala D-ala ligase [Enterococcus faecalis TX0630]
 gi|323480023|gb|ADX79462.1| D-alanine--D-alanine ligase [Enterococcus faecalis 62]
 gi|327534427|gb|AEA93261.1| D-alanine--D-alanine ligase [Enterococcus faecalis OG1RF]
          Length = 356

 Score =  156 bits (393), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|269958139|ref|YP_003327928.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
 gi|269306820|gb|ACZ32370.1| D-alanine/D-alanine ligase [Xylanimonas cellulosilytica DSM 15894]
          Length = 349

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 97/309 (31%), Positives = 151/309 (48%), Gaps = 15/309 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG+  A AL   G  V+  DVD  +   L   +PD+ + +LHG
Sbjct: 39  VVVLAGGLSHERDVSLRSGRRVAEALRSVGVDVAVHDVDAQLLRYLDEHRPDVVWPLLHG 98

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++ +LEL  +PY  +G  AS L+ DK  +K+ + + G+     + + +     
Sbjct: 99  AGGEDGSLRDVLELAGVPYVGTGPRASRLAWDKPIAKERLQTAGLATPEWLTLPQELFRD 158

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V+KP +GGS+LG+  +     +   +     + +GD  LIE+
Sbjct: 159 LGAQGVLSIVAERFGLPVVVKPTRGGSALGVTRVTSKDGLARAM--VDCFAYGDSALIER 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            VDG+E+   V+      V   AV       Y  + +Y+     +  PA++  D    V 
Sbjct: 217 AVDGVEIAVSVIDGMDGPVALPAVEIIVDGPYDFDARYNPGRVEYFAPARLSPDQAAHVA 276

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AHQA+  R +SR+D +          LE+NV PGMT  S+ P+ A  AG+    L
Sbjct: 277 GVAVAAHQALDLRHLSRTDLIL-QTDGTAQVLEVNVAPGMTETSLLPQAAVAAGHDLGTL 335

Query: 289 LLWMVEDAS 297
              +VE A+
Sbjct: 336 YRQVVEHAA 344


>gi|256833758|ref|YP_003162485.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
 gi|256687289|gb|ACV10182.1| D-alanine--D-alanine ligase [Jonesia denitrificans DSM 20603]
          Length = 319

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 93/298 (31%), Positives = 157/298 (52%), Gaps = 14/298 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG+S ER+VSL SG+  A AL   G  VS +DVD  +   L   +PDL + +LHG
Sbjct: 7   VVILAGGLSHERDVSLRSGRRVAEALRSTGMTVSVVDVDAQLLPRLQSHRPDLVWPLLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GEDG ++ +LELL++PY  +    S ++ +K  +K V+++ GV     + + +     
Sbjct: 67  ASGEDGSIRDVLELLDLPYLGTRPRESRVAWNKPVAKAVLAAAGVLTPSYVTLPQSLFRE 126

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS+LG+ ++   + +P  L     + +GD  LIE+
Sbjct: 127 LGARSVMEPVTAKLGLPLVVKPAQGGSALGVTLVTSAEQLPQAL--VDCFAYGDLALIEE 184

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSD-FYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G E++  V+    +         +D  Y Y+ +Y+   + +  PA++  +I     R
Sbjct: 185 AITGTEVSVSVVESPDVTALPAVEIITDGPYDYDARYNPGRTQYFTPARLDPEIADAAAR 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +A  AH  +G R +SRSD + D    +V++LE+NV PGMT  S+ P+    +G S  +
Sbjct: 245 VALTAHTTLGLRHVSRSDLIIDGK-GQVWFLEVNVAPGMTETSLLPQAVVASGQSLPD 301


>gi|240168958|ref|ZP_04747617.1| D-alanyl-alanine synthetase A [Mycobacterium kansasii ATCC 12478]
          Length = 370

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 157/360 (43%), Gaps = 65/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 10  VAVVFGGRSNEHAISCVSAGSILRNLDPQRFEVIAIGITPQGSWVLTDGNPDALAITNRQ 69

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 70  LPAVSSESGTLLALPADPQWGGRLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYV 129
           L  +PY  +G+LASA  MDK  +K+++++ G+PV P  ++         D    +  P  
Sbjct: 130 LAGVPYVGAGVLASAAGMDKEFTKKLLTADGLPVGPHAVLRPSRPALSLDECERLGLPAY 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +P  + ++    H  ++++E  V+G EL CGV+       
Sbjct: 190 VKPARGGSSIGVSRVSSWDELPAAVAEAR--RHDPKVIVEAAVNGRELECGVLEFPDGTV 247

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +  KY    +   +PAK+  D+   V+ LA  A  AI 
Sbjct: 248 QASTLGEIRVAGVRGREDAFYDFATKYLDDAAELDVPAKVDDDVADAVRDLAIRAFHAID 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C+G++R DF            EIN  PG T +S++P M A +G  +  LL  MVE A   
Sbjct: 308 CQGLARVDFFLTEEG--PVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMVETALAR 365


>gi|238764550|ref|ZP_04625497.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
 gi|238697252|gb|EEP90022.1| D-alanine--D-alanine ligase [Yersinia kristensenii ATCC 33638]
          Length = 359

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 83/345 (24%), Positives = 145/345 (42%), Gaps = 55/345 (15%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-------------- 49
           + GG S+E EVSL S K    A++   F+V+ + +D+     +                 
Sbjct: 2   IFGGKSAEHEVSLQSAKNIVDAIDKEKFEVTLLGIDKQGKWHINDASSYLLNAEHPALIS 61

Query: 50  -----------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                        + D+ F ++HG  GEDG +Q +L +  IP+ 
Sbjct: 62  LNHSNKNVALILGQESQQLIATDNAAALAQLDVIFPIVHGTLGEDGSLQGLLRMANIPFV 121

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLK 134
            SG++ SA+SMDK  +K+++   G+ + P I + R   DS         +  P  IKP  
Sbjct: 122 GSGVVGSAVSMDKDITKRLLRDAGLNIAPFITLTRGNKDSYCFEKITEKLGLPLFIKPAN 181

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+  ++        +  +   +   ++L+E  + G E+ C VMG+ +   +    
Sbjct: 182 QGSSVGVSKVRNAAEYEQAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASLCGE 239

Query: 195 PKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  Y      +N      ++PA I       ++ +A    +A+ C G++R D    
Sbjct: 240 VVISDEFYSYDTKYINETGAQVIIPAAIDSAASDNIRTVALATFRALECCGMARVDVFLT 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P    V   EIN  PG T +S++P++    G    EL+  ++E A
Sbjct: 300 P-DNHVIINEINTLPGFTNISMYPKLWRATGVGSTELITTLIELA 343


>gi|190892155|ref|YP_001978697.1| D-alanine-D-alanine ligase [Rhizobium etli CIAT 652]
 gi|190697434|gb|ACE91519.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 652]
          Length = 358

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 149/350 (42%), Gaps = 53/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL    +    I + R    +L+ +           
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALAPEKYDAVPIFISREGQWLLSSIVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG +GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGRGRMMAIPAGGTPYDLPGIDILFPVLHGPYGEDGSVQGLAEVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ +      S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKDIAKRLLRAAGLPVARAVTIRADAAPSLATLESELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q     L ++    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLENAAGELFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA++P D+   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYNYDAKYIDENGAALKVPAELPPDVEATMRDMAAKAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
              +    EIN  PG T +S++ +  A +G S+ E++  +V+   A   R
Sbjct: 307 SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMARAGR 356


>gi|148271442|ref|YP_001221003.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147829372|emb|CAN00285.1| putative D-alanine--D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 335

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 103/336 (30%), Positives = 157/336 (46%), Gaps = 41/336 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           ++VL GG S ER+VS++S      AL   G +V  +D  R      A  +          
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRALGHEVVAVDTARGALDAAAEARILTPDVGVRP 62

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATAAAGGSAAVLRLPADLRDGDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV     I+        +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWIID-PEPDAVEPALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +P  L  +        +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAEELPAALELARRH---GTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D     ++ +E N 
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLAGYSRSDFRLDDA-GALWIIEANS 297

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            PG+T  S+ P+ AA  G  + EL   +   A   R
Sbjct: 298 LPGLTATSLLPQSAAAVGIGYPELCDRIARIALRGR 333


>gi|160937585|ref|ZP_02084946.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439654|gb|EDP17404.1| hypothetical protein CLOBOL_02476 [Clostridium bolteae ATCC
           BAA-613]
          Length = 372

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 146/341 (42%), Gaps = 53/341 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG SSE  VS  S       ++   + V  + +      +                
Sbjct: 26  AVIFGGQSSEHIVSCMSAVNVIEHIDRTRYDVLLVGITEDGHWIKADSLEDVKNGTWRDK 85

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +  ++ D+ F VLHG +GEDG +Q +LEL +IPY   G
Sbjct: 86  TVSALLLPDATKKCILLMDGDSVREVRVDVVFPVLHGLYGEDGTIQGLLELAKIPYVGCG 145

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKG 135
           +L+SA+SMDK+ +K +V   GV       V R  +          +   S P  IKP   
Sbjct: 146 VLSSAVSMDKLYTKIIVDDLGVRQAAYEAVYREQLVHMESVVERVEKHFSYPVFIKPSNA 205

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVTE 191
           GSS G+      Q++   L +++   H  ++L+E+ + G E+ C V      +       
Sbjct: 206 GSSRGVTKADDRQALEAGLSEAA--RHDRKILVEETIIGREIECAVFGGGLKEVVASGVG 263

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +  ++FY +E KY +  S  V   ++P    + V++ A    +A+   G++R DF   
Sbjct: 264 EILAAAEFYDFEAKYYNEESRTVTDPELPAGAAERVRQAAMDIFRAVDGYGLARVDFFV- 322

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +V + EIN  PG T +S++P +    G +  +L+  +
Sbjct: 323 KDDGEVVFNEINTMPGFTAISMYPMLWEARGITKDQLVDML 363


>gi|56201416|dbj|BAD72951.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|300781323|ref|ZP_07091177.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
 gi|300533030|gb|EFK54091.1| D-alanine--D-alanine ligase [Corynebacterium genitalium ATCC 33030]
          Length = 354

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 91/345 (26%), Positives = 146/345 (42%), Gaps = 54/345 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
           AV+ GG+SSE  +S  S  A  + L    +K+  + + +    V     P          
Sbjct: 8   AVIYGGMSSEHSISCISAGAIMAELPKDKYKIFPVGITQDGVWVEGTTDPVGDSQLPSVA 67

Query: 52  -----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D  F VLHG +GEDG +Q +L+L  +PY   
Sbjct: 68  GEREVALSVNPSRRGEFYDARTGEVLATIDAVFPVLHGTYGEDGTIQGLLDLAGVPYVGP 127

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSL 139
           G+L+SA SMDK  +K V  S  VPV   +++                P  +KP +GGSS+
Sbjct: 128 GVLSSACSMDKQFTKIVARSADVPVTREVVLVDDEHLDDSDRDYLGLPVFVKPARGGSSI 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----- 194
           GI  +     +   +  +    +  +++IE  + G E+  GV+   + D+          
Sbjct: 188 GINKVDSWDQLDDAVRFAR--LYDSKVIIEAELVGDEVEVGVIERPNGDLIASPPAKLNG 245

Query: 195 ---PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               +  FY +E KY     T  +PA     +  +++ LA    +A+ CRG++R DF   
Sbjct: 246 TSESEEGFYGFETKYLDDVVTATIPAGYDDVMNAKLEELAIRTFRALDCRGLARVDFFVT 305

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                    E+N  PG T +S+FP++   AG S+ ELL  ++  A
Sbjct: 306 SEG--PMLNEVNTMPGFTSISMFPQVFQAAGMSYGELLETLIATA 348


>gi|123966700|ref|YP_001011781.1| D-alanyl-alanine synthetase A [Prochlorococcus marinus str. MIT
           9515]
 gi|166198500|sp|A2BY13|DDL_PROM5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123201066|gb|ABM72674.1| D-alanine--D-alanine ligase [Prochlorococcus marinus str. MIT 9515]
          Length = 355

 Score =  156 bits (393), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 82/343 (23%), Positives = 143/343 (41%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S+E  VS+SS K    AL        F++    +++    +           
Sbjct: 9   IGIIFGGTSNEHYVSISSAKTVFKALISRTNKELFRIKAFYINKHGVWIDSDLSLEILRE 68

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  L     D+ F +LHG  GEDG +  +L+  + P    
Sbjct: 69  NSGNNIFEKYQELPNRKINFLNNLEFQNIDIWFPLLHGCNGEDGAIHGLLKFTQKPLIGC 128

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIK 131
           GI  SA+ MDK+  KQ+ S+  +P    + +  + +   +            ++ P  +K
Sbjct: 129 GISGSAIGMDKILMKQIFSNLSIPQVNFLAIQNYDLSDDNVKDNLSVEIIEKLNLPVFVK 188

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSSLGI   K    I   L ++   +    +     V  +E         S     
Sbjct: 189 PANSGSSLGISKAKNKSEIIKALQKAWEIDSRIVIEEGLNVRELECGIIGNLKLSTSKIG 248

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                SD+Y Y+ K  S ++  ++PA I   I ++++ LA  + +A+   G +R DF  +
Sbjct: 249 EVSYSSDWYDYDSK-YSTDNKIIIPADIDSQISEQIKDLAIRSCRALNIYGFARVDFFLE 307

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +SRK+F  EIN  PG T  S+FP +   +G +  +L+  +++
Sbjct: 308 KISRKIFLNEINTIPGFTSKSMFPMLWKASGLNIDQLVAKLID 350


>gi|324990632|gb|EGC22568.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK353]
          Length = 353

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 157/339 (46%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEAKPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEDGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSGLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       +     + +  ++ P   KP   GSS+GI   + 
Sbjct: 133 KITTKRVLESAGIAQVPYVALVDGEDLEEKIQEIEEKLTYPVFTKPSNMGSSVGISKSEN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V   E+  G++G+  +  T     V    FY YE 
Sbjct: 193 RAELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNVDVKSTLPGEVVKDVAFYDYEA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI  ++   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMDIPAKISEEVVSLMRQNAEAAFRALGGLGLSRCDFFYTE-DGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|290580905|ref|YP_003485297.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
 gi|254997804|dbj|BAH88405.1| putative D-alanine-D-alanine ligase [Streptococcus mutans NN2025]
          Length = 349

 Score =  155 bits (392), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 89/335 (26%), Positives = 149/335 (44%), Gaps = 44/335 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52
            +L GG S+ER+VS+ S ++   A+    F V    + ++    +   + D         
Sbjct: 7   VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           MDK+ +KQ       +     V +     +     + +  +  P  +KP   GSS+GI  
Sbjct: 126 MDKITTKQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 185

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201
            +    +   +  +    +  ++LIEQ VD  E+  G+    D    +    V    FY 
Sbjct: 186 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 243

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  E
Sbjct: 244 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 LNTMPGFTQWSMYPLLWENMGLSYSDLIEELVSLA 337


>gi|227494178|ref|ZP_03924494.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
 gi|226831912|gb|EEH64295.1| possible D-alanine--D-alanine ligase [Actinomyces coleocanis DSM
           15436]
          Length = 317

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 90/313 (28%), Positives = 158/313 (50%), Gaps = 19/313 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V+ GG++ ER+VSL SG+  A+ L   G  V   D++      +A  +PD+ + ++HG+ 
Sbjct: 9   VVAGGLTHERDVSLRSGRRVANLLRQLGHTVEVCDLNSQFLPTVAEFEPDVVWPLIHGSV 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q +LEL+  PY  S   A  L+  K  +K + +  G+     I + +       
Sbjct: 69  GEDGSIQDLLELVGFPYVGSRAHACVLASSKPTAKSLATIEGITTPAWISLTQSLFRQVG 128

Query: 121 -----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      +  +S P ++KP  GGS+LG+  +  +  +   +    ++ +GD +++E
Sbjct: 129 APAVLQAILQSKDNLSFPLIVKPADGGSALGLSKVSSEDELRSAM--VDAFAYGDTVMVE 186

Query: 170 QYVDGIELTCGVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Q++ G E+   V+    L        V     Y Y+ +Y++  S    PA++  D   EV
Sbjct: 187 QFIPGREIAVSVVDLDELYALPPVEIVTDDGRYDYDARYNTGRSQFFAPARLTADETAEV 246

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           QR+A   H+ +G R +SR D +      +++ +++NV PGMT  S+FP+ A  AG SFR+
Sbjct: 247 QRVALEVHELLGLRHLSRVDLIL-GEDGQIYLIDVNVAPGMTDTSLFPQAAEAAG-SFRD 304

Query: 288 LLLWMVEDASCLR 300
           +L  +   A   +
Sbjct: 305 ILGEIAAFAVSDK 317


>gi|239628538|ref|ZP_04671569.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47_FAA]
 gi|239518684|gb|EEQ58550.1| D-alanine-D-alanine ligase [Clostridiales bacterium 1_7_47FAA]
          Length = 353

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 145/343 (42%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG SSE  VS  S       ++   + +  + +      +               
Sbjct: 6   VAVIFGGQSSEHIVSCMSAVNVIEHIDSTRYNIVLVGITEEGHWIKTESLEDVKSGAWRD 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                  +  +K D+ F +LHG +GEDG +Q +LEL  IPY   
Sbjct: 66  GKVWAVLPPDATKKCILLMDGDNVEEVKVDIVFPILHGLYGEDGTIQGLLELARIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------MDSQHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +VS  G+       V R             +     P  IKP  
Sbjct: 126 GVLASAVSMDKLYTKIIVSDLGIRQAEYESVYREELGDMEQVASRIEKHFPYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS GI      Q +   LL+++   H  ++L+E+ + G E+ C V             
Sbjct: 186 AGSSRGISKAGNRQELEAGLLEAA--RHDRKILVEETIVGREVECAVFGGGSHGIEASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY ++ KY +  S  V    +P    ++V+R A    +A+   G++R DF  
Sbjct: 244 GEILAAAEFYDFDAKYFNEESRTVTDPVLPDGATQKVRRAAMDIFRAVDGYGLARVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              + +V + EIN  PG T +S++P +    G    +L+  ++
Sbjct: 304 -KDNGEVVFNEINTMPGFTAISMYPMLWEARGIGKDQLVGMLL 345


>gi|312866057|ref|ZP_07726278.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
 gi|311098461|gb|EFQ56684.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus downei
           F0415]
          Length = 348

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 84/326 (25%), Positives = 145/326 (44%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++   F V    + ++   + A               
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYDKFNVKTYFITQAGDFIKAQEFTSQPSESEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE+L +PY  + +L+S+++MD
Sbjct: 68  NATVDASQAVKPSDIYQENAIVFPVLHGPMGEDGSIQGFLEVLRLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V+ S GVP    +        ++        ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKHVLESTGVPQVAYVTYMEGQDMAEAIARASQKLTYPVFVKPANMGSSVGISKAET 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D  +   L  +  ++    +        IE+                V    FY YE KY
Sbjct: 188 DGELREALELALKYDSRILIEQGVVAREIEVGILGNSQVKTTQPGEVVKDVAFYDYEAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                +  +PA++P ++  +++  A  A +AIG  G+SR DF     S +++  E+N  P
Sbjct: 248 IDNKISMAIPAQVPEEVMDKMRTYAETAFRAIGGCGLSRCDFFLTE-SGEIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
           G T  S++P +    G  +++L+  +
Sbjct: 307 GFTQWSMYPLLWENMGLPYKDLITEL 332


>gi|257081093|ref|ZP_05575454.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
 gi|256989123|gb|EEU76425.1| D-alanine:D-alanine ligase [Enterococcus faecalis E1Sol]
          Length = 356

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 80/342 (23%), Positives = 144/342 (42%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEEIGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LASA +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|126661460|ref|ZP_01732516.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
 gi|126617252|gb|EAZ88065.1| D-alanylalanine synthetase [Cyanothece sp. CCY0110]
          Length = 349

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 147/347 (42%), Gaps = 57/347 (16%)

Query: 1   MAVLMGGISSEREVSLSS----------GKACASALEDAGFKVSQIDVDRSVGLV----- 45
           + +L GG S E EVS++S          G+        + + +  + + ++   +     
Sbjct: 6   VGLLFGGRSGEHEVSINSAAAIAQALQIGEN------GSKYDILPVYIQKNGVWLAGDTA 59

Query: 46  -------------------LAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                              L    P     ++   VLHG  GEDG +Q +L L+++P+  
Sbjct: 60  SKVLETKTPLSTEDTNPSQLWQFPPQVQEVEVWVPVLHGPNGEDGTIQGLLRLMQVPFVG 119

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPYV 129
           SG+L SA+ MDK+  K   +  G+P      V R  + S   I              P  
Sbjct: 120 SGVLGSAVGMDKIAMKMAFAQAGLPQVKYRAVERSQVWSNPCIFPKLCDEIEADLGYPCF 179

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  ++    +   L  ++S++    +        +E       +    V
Sbjct: 180 VKPANLGSSVGIAKVRSHSELETALDSAASYDRRIVIEAGVNARELECAVLGNDNPKASV 239

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                 + DFY YE KY+   S   +PA +P  I  ++Q +A  A + +   G++R DF 
Sbjct: 240 VGEVTFEGDFYDYETKYTEGRSQIHIPANLPDKIVTQIQEMAIQAFKTVDAAGLARVDFF 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   + +++  EIN  PG T  S++P++    G +F +L+  +V+ A
Sbjct: 300 YVEETEEIYLNEINTLPGFTKFSMYPQLWKATGINFEQLVDQLVQFA 346


>gi|115373733|ref|ZP_01461027.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|310823632|ref|YP_003955990.1| d-alanine--d-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115369280|gb|EAU68221.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|309396704|gb|ADO74163.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 326

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 103/301 (34%), Positives = 164/301 (54%), Gaps = 9/301 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VLMGG   EREVSL +G+A  +ALE  G  V+++     +  +L   + D+AF  LHG
Sbjct: 5   VGVLMGGWGEEREVSLKTGEAAVAALEAEGHTVTRVFAGPGLDRILRTAELDVAFLALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--- 117
             GEDG VQ +LELLE+PYT SG+LASAL+M+K  +K++     +P      + R     
Sbjct: 65  RMGEDGKVQGLLELLELPYTGSGVLASALAMNKPFAKKLFRLHNLPTPQGYRIGRDELAL 124

Query: 118 -MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P V+KP  GGSSLG+ ++++ +++   +  + +  +G + L+E++V G E
Sbjct: 125 LEERHGDLGFPCVVKPACGGSSLGLALVREPEALAPAV--AEACRYGGEALVERFVRGRE 182

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +T G++G   L   EIA P+   + YE KY    +  + P      +          A +
Sbjct: 183 VTVGILGGEVLGSCEIAAPRE-GFDYEAKYKGGTNYFLPPRLSATRLANVESLAL-SAWR 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A+GCRG  R D +          LE+N  PG+TP S+ P++AA  G  F +L+  ++  A
Sbjct: 241 ALGCRGYGRVDLICSEEQNDF-VLEVNTLPGLTPTSLLPKIAAQRGIGFAQLVERILGLA 299

Query: 297 S 297
           +
Sbjct: 300 T 300


>gi|159036808|ref|YP_001536061.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157915643|gb|ABV97070.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 360

 Score =  155 bits (392), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 97/354 (27%), Positives = 157/354 (44%), Gaps = 62/354 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           AV+ GG S E  +S  S  +  +AL+   ++V  + + R+   VL               
Sbjct: 2   AVVFGGRSPEHGISCVSAGSVLAALDPDEYEVVPVGISRAGQWVLTGGDSSQLAITDRRL 61

Query: 47  --------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                           A    D+ F VLHG +GEDG +Q +LE+
Sbjct: 62  PEVTAESGTAVVLNADPSSGGLLVLDPAEGSRALADVDVVFPVLHGAYGEDGTIQGMLEM 121

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIK 131
             IPY  + + ASA +MDK  +K++ ++ G+PV P          T   +  +  P  +K
Sbjct: 122 AGIPYVGANVFASAAAMDKEFTKKLCAAEGIPVGPYAVLRSGMTLTEQDKQRLGLPVFVK 181

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  +     +   +  +       ++L+E  V G E+ CGV+   +  V E
Sbjct: 182 PSRAGSSFGITRVTDWADLDDAVANARKI--DPKVLVESAVIGREIECGVLEAEAGGVPE 239

Query: 192 -------IAVPKSDFYSYELKYSSLN--STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                    V   DFY +E KY   +    + +PA +P  + ++VQ  A  A  A+ C G
Sbjct: 240 ASALAEVRVVGDYDFYDFEAKYIDADAACEYDIPADLPERVTRQVQEYAVRAFTALDCAG 299

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R+DF   P    V+  E+N  PG TP S+FP M A +G  +++L+  ++  A
Sbjct: 300 LARADFFVTPELD-VYLNEVNTMPGFTPTSMFPRMWAASGLEYQKLVNRLIRTA 352


>gi|326332503|ref|ZP_08198776.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
 gi|325949693|gb|EGD41760.1| D-alanine--D-lactate ligase [Nocardioidaceae bacterium Broad-1]
          Length = 350

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 143/342 (41%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG+  E  VS+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   VGIIFGGVFEEHPVSVKSAQEVARHLDTDRYEPYWIGITKSGDWRLCDGPEASWEDGAHR 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      ++ D+   VLHG  GEDG  Q + EL  IPY  
Sbjct: 66  PVVLSPDRSVHGLLVLDQDDHGGSYETIRLDVVLPVLHGKLGEDGAPQGLFELSGIPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
             + +SAL MDK  +  VV+  G+P      +         ++  P  +KP + GSS G+
Sbjct: 126 CDVQSSALCMDKSLAYTVVAEAGIPTPTFWTLYPGDEIDPGVLPYPVFVKPARSGSSFGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             +     +   +  +    + +++LIE+ V   E+ C ++G+ +  VT      +  + 
Sbjct: 186 SKVSSAAELDEAIATAR--QYDEKVLIEEGVVAEEIGCAILGNGADLVTGEVDHVALSHG 243

Query: 202 YELKYSSL-------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           +   +          N+T ++PA IP +  + V+  A   ++A+GCRG++R D       
Sbjct: 244 FFKIHQEDAPETGSENATFIVPADIPAEAQELVKTEAQRVYRALGCRGLARVDMFL-KAD 302

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             V   E+N  PG+T  S +P M A AG S  ELL   +  A
Sbjct: 303 GTVVLNEVNTLPGLTSYSRYPRMMAAAGISMTELLDRAITLA 344


>gi|289705874|ref|ZP_06502254.1| D-ala D-ala ligase [Micrococcus luteus SK58]
 gi|289557417|gb|EFD50728.1| D-ala D-ala ligase [Micrococcus luteus SK58]
          Length = 379

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDVLP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPEAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
              G+LASA+ MDK   K               +            +     ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVSFQAAGLEVGAWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  + +   +   + ++       ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGSAAPR 256

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
            ++P     +++   +                   PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|195977778|ref|YP_002123022.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|226729273|sp|B4U1Z2|DDL_STREM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|195974483|gb|ACG62009.1| D-alanine--D-alanine ligase Ddl [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 348

 Score =  155 bits (392), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYTKFFVKTYFISQTGQFIKTQEFSSQPAATERLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++MD
Sbjct: 68  NATIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S  +P     +        + L      +S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESADIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G S+ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336


>gi|296271531|ref|YP_003654163.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
 gi|296094318|gb|ADG90270.1| D-alanine/D-alanine ligase [Thermobispora bispora DSM 43833]
          Length = 316

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 98/308 (31%), Positives = 157/308 (50%), Gaps = 16/308 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A  L  AG  V   D D  +   +    P+ AF  LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVAEVLRAAGVDVEVRDTDAGLVPAVLADPPEAAFVALHGGV 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++++LELL +PY  +   A  ++ DK  +K VV S G+    S+ + + T     
Sbjct: 69  GEDGAIRSVLELLNVPYVGATPDACRVAFDKPTAKAVVRSWGLATPDSVALPKETFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  +++  + +P  +     + +GD  LIE+Y+
Sbjct: 129 ASAVLERIVDRLGLPLFVKPAQGGSALGASIVRTAEELPAAM--VGCFAYGDTALIEKYI 186

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG+E++  V+              VP    Y Y  +Y++  +    PA++  +  +  + 
Sbjct: 187 DGVEVSVSVIDLGDGPVALTPVEIVPDGGVYDYAARYTAGRTEFFAPARLTDEEIEACKA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R +SR+D + D  S + ++LE+NV PGMT  S+FP     AG     + 
Sbjct: 247 MAVTAHTALGLRDLSRTDIIVD-RSGQPYFLEVNVSPGMTETSLFPMAVETAGRDLGTVF 305

Query: 290 LWMVEDAS 297
             ++E A+
Sbjct: 306 RVLLERAA 313


>gi|257054969|ref|YP_003132801.1| D-alanyl-alanine synthetase A [Saccharomonospora viridis DSM 43017]
 gi|256584841|gb|ACU95974.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 365

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 93/356 (26%), Positives = 149/356 (41%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S+E  +S  S  +  + L+   F+V  I + +  G VL    P         
Sbjct: 8   VAVVFGGRSTEHTISCVSAGSIMANLDPDRFEVVPIGITQEGGWVLGTNDPEQLRIKGRE 67

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F  LHG FGEDG +Q +LEL 
Sbjct: 68  LPVVEHGKTLVLAGDPTTGGVLSLTAGEPAEVLSGVDVVFPALHGAFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIK 131
           +IPY  SG+ ASA +MDK  +K+++++ G+ V    +V R         +  +  P  +K
Sbjct: 128 DIPYVGSGVFASAAAMDKEYAKKLLAAEGLEVGRYAVVRRGQDTLPAEERERLGLPVFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS+GI  +     +   +  +       ++L+E    G E+ CGV+  A   V  
Sbjct: 188 PARAGSSIGISRVTDWSQLDAAIAHARQT--DPKVLVEAETVGREVECGVLEFADGRVEA 245

Query: 192 IAVPKSDFYSYELKYSSLNSTHV--------LPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +    S +        T          +PAK+   I + ++ +A  A  A+ C+G+
Sbjct: 246 SFPSEIRVLSDDADAWYDFETKYLGEDAELDIPAKLDDTITERLRDMAVRAFTALECQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF   P    +   E+N  PG TP S +P+M    G  +  LL  +VE A   
Sbjct: 306 ARVDFFVGP-DGTLTVNEVNTMPGFTPTSAYPKMWEVTGIDYPTLLTTLVETALAR 360


>gi|15672323|ref|NP_266497.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. lactis
           Il1403]
 gi|13878460|sp|Q9CIL5|DDL_LACLA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|12723209|gb|AAK04439.1|AE006271_2 D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis
           Il1403]
 gi|326405920|gb|ADZ62991.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. lactis CV56]
          Length = 349

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 152/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+  + F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67

Query: 46  --LAH-----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
             LA             K  + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKAAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +         +        +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203
              +   L ++    + ++++IEQ VD  E+ C V+G+ S          V   +FY Y 
Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF        V+  EIN
Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVT-KDGNVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|255306638|ref|ZP_05350809.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile ATCC 43255]
          Length = 366

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 100/360 (27%), Positives = 156/360 (43%), Gaps = 69/360 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E +VSL S  A    L    + +  I + R                    
Sbjct: 6   IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWYHYIGDYNNIQNNTWF 65

Query: 45  -------------------VLAHLKPDLA-------------------------FNVLHG 60
                              ++  L PD                           F +LHG
Sbjct: 66  ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPILHG 125

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+ V  SIL+      +
Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG E
Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243

Query: 177 LTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           + C V    D  +   +       F+ Y  KY+  +S   +PA+I LD  K +Q  A + 
Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ +GC G +R D    P S ++ + E+N  PG T  S +P M    G SF E+L  ++E
Sbjct: 304 YRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSRYPNMMKGIGLSFEEILDKIIE 362


>gi|291459933|ref|ZP_06599323.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
 gi|291417274|gb|EFE90993.1| D-alanine--D-alanine ligase [Oribacterium sp. oral taxon 078 str.
           F0262]
          Length = 360

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 84/352 (23%), Positives = 142/352 (40%), Gaps = 59/352 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           V+ GG S+E EVS  S +  A  ++   +++  + + +     LA               
Sbjct: 9   VIFGGRSTEHEVSCRSVQNIARDVDRERYELVLLGITKEGEWRLAEDLSSIEDGSWREGK 68

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                    + D+ F  LHG +GEDG +Q + EL  IPY  SG+
Sbjct: 69  RAMLLPDASLRSLLIFEKDGSSRLQRIDVIFPALHGKYGEDGSIQGLFELSGIPYVGSGV 128

Query: 85  LASALSMDKMRSK------------QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           LASA+SMDK+ +K            +      V       +       +     P  +KP
Sbjct: 129 LASAVSMDKLFTKVIAAQPLKKLGLRQARCLPVDAAELGRMEEILNRVEKSFQYPVFVKP 188

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG----VMGDASLD 188
              GSS G+  ++K + +P  L  ++      +LL+E+ V G EL C             
Sbjct: 189 ANAGSSCGVSRVEKREELPDALRAAAKV--DRKLLVEETVYGRELECALLRGPDMKIHAS 246

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                   + FY Y+ KY++ +S   +  ++  +  + ++  A     A+   G++R DF
Sbjct: 247 GLGEIRAAASFYDYDAKYNNPDSVTDVNPELDAENAELIRSAAKAIFAAVDGYGLARVDF 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                     + EIN  PG T +S++P +    G   REL+  +++ A C R
Sbjct: 307 FLTEDG--PVFNEINTLPGFTAISMYPMLWEAKGIGKRELIQRLIDSA-CQR 355


>gi|197302342|ref|ZP_03167401.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
 gi|197298773|gb|EDY33314.1| hypothetical protein RUMLAC_01073 [Ruminococcus lactaris ATCC
           29176]
          Length = 352

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 96/351 (27%), Positives = 152/351 (43%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------VDR-- 40
           + VL GG+S+ER+VSLSS       L + G     +D                   D   
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLLEKGHDAFLLDVFMGLEHTPENLEDVFTLPDHGL 62

Query: 41  SVGLVLAHLKPDLA----------------------------FNVLHGNFGEDGLVQAIL 72
            +   ++  +PDLA                            F  LHG  GE+G +QA  
Sbjct: 63  DIVKNISTEEPDLAAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQAAF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129
           +LL I YT    L  A++M K  +KQ+    GV                     ++ P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTLYKNGSDLSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L  S    + D++++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYQNALEHSFH--YEDEIVVEPYIKGREFACGIIDGKALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY    +  V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQDGATMEVCPADIPEEVAERMKALTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  AG  + +L   +++ +   R
Sbjct: 300 LDAE-GSLYCLEMNTLPGMTSASLMPKEAKVAGIEYSDLCELIIKKSMEAR 349


>gi|281490888|ref|YP_003352868.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
 gi|281374646|gb|ADA64166.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. lactis
           KF147]
          Length = 349

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 150/333 (45%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFVVKTYFITKGGEFIKTQEFTDKPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +         +        +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQGEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203
              +   L ++    + ++++IEQ VD  E+ C V+G+ S          V   +FY Y 
Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVEFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+P D+ +++Q  A  A++A+   G+SR DF        V+  EIN
Sbjct: 246 SKYIDNKIQMDIPAKVPADLAQKMQEYAIKAYKAVNGTGLSRCDFFVT-KDGNVYLNEIN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|184153120|ref|YP_001841461.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri JCM 1112]
 gi|183224464|dbj|BAG24981.1| D-alanine--D-alanine ligase [Lactobacillus reuteri JCM 1112]
          Length = 382

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 11  IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 70

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 71  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 130

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P +        +      +  +     +KP K GS
Sbjct: 131 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 190

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  +++   +              +  +  +     AV   
Sbjct: 191 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 250

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               +    +           LP K+P  +  E+  +A  A++A+G +G++R DFL D  
Sbjct: 251 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 309

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  +++ 
Sbjct: 310 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 351


>gi|148543712|ref|YP_001271082.1| D-alanyl-alanine synthetase A [Lactobacillus reuteri DSM 20016]
 gi|227363309|ref|ZP_03847439.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|325682083|ref|ZP_08161601.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
 gi|190359177|sp|A5VIS1|DDL_LACRD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|148530746|gb|ABQ82745.1| D-alanine--D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|227071672|gb|EEI09965.1| D-alanine--D-alanine ligase [Lactobacillus reuteri MM2-3]
 gi|324978727|gb|EGC15676.1| D-alanine-D-alanine ligase [Lactobacillus reuteri MM4-1A]
          Length = 378

 Score =  155 bits (391), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P +        +      +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENQADYSWGRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  +++   +              +  +  +     AV   
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               +    +           LP K+P  +  E+  +A  A++A+G +G++R DFL D  
Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  +++ 
Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347


>gi|189462985|ref|ZP_03011770.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
 gi|189430267|gb|EDU99251.1| hypothetical protein BACCOP_03687 [Bacteroides coprocola DSM 17136]
          Length = 326

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 143/322 (44%), Gaps = 29/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE +VS+ S +   S ++   + +  +++ +     L              
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q +
Sbjct: 65  SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+           D    I  P  IKP   GSS G+  +K  + I   L +
Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPALEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D ++IE ++DGIEL  G        V            +       +   T +
Sbjct: 185 AF--AESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEVVSKNEFFDYNAKYNGEVTEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S  
Sbjct: 243 TPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+    AG   +E++  ++ED+
Sbjct: 302 PQQVRAAGIDIKEVMTDIIEDS 323


>gi|239917398|ref|YP_002956956.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
 gi|239838605|gb|ACS30402.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
              G+LASA+ MDK   K               +            +     ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQAAGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  + +   +   + ++       ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGAAAPR 256

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
            ++P     +++   +                   PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|281414117|ref|ZP_06245859.1| D-alanine--D-alanine ligase [Micrococcus luteus NCTC 2665]
          Length = 379

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 77/356 (21%), Positives = 135/356 (37%), Gaps = 65/356 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG SSE  +S  +      A +   + V  + V RS       L             
Sbjct: 19  LLFGGRSSEHPISCVTAAGVLHAADRQRWDVVPVGVARSGLWSHDELDVASFRLDGDALP 78

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                           D+ F +LHG +GEDG +Q + E L +PY
Sbjct: 79  EVPEPKAPVSLRALPDGTVELTAADGSSLGPVDVVFPLLHGPWGEDGTLQGMFESLGLPY 138

Query: 80  THSGILASALSMDKMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
              G+LASA+ MDK   K               +            +     ++ P  +K
Sbjct: 139 VGCGVLASAVGMDKHFMKVAFQATGLQVGPWETITARDWARDPEAALARAGALAYPLFVK 198

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS GI  + +   +   + ++       ++++E  + G E+ C V+         
Sbjct: 199 PARAGSSFGITRVTEPAGLRAAVEEAR--RFDPKVVVEAGIVGREIECAVLDGHGAAAPR 256

Query: 192 IAVPKSDFYSYELKYSSLNSTHV-----------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
            ++P     +++   +                   PA++P +  + ++ LA  A +A+  
Sbjct: 257 ASLPGEIVVAHDEGETQFYDFESKYQDTGTTQLSCPAELPEEEIERLRALAIRAFEAVDG 316

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+ R DF F P   +    EIN  PG TP+S++P M    G S+ +L+  +++ A
Sbjct: 317 SGLGRCDFFFTP-DGRWVVNEINTMPGFTPISMYPAMWERTGLSYDDLISELLDLA 371


>gi|262039022|ref|ZP_06012356.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
 gi|261746932|gb|EEY34437.1| D-alanine--D-alanine ligase [Leptotrichia goodfellowii F0264]
          Length = 309

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 90/302 (29%), Positives = 160/302 (52%), Gaps = 11/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+ER+VSL++G+     L    ++V  I ++    V   L  L  D  +  L
Sbjct: 7   VGVISGGVSTERDVSLNTGREIVKNLNRGKYEVFDIVINSENEVFEKLKDLNLDFVYIAL 66

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--- 115
           HG FGEDG +QAILE L I Y   G+++S++ MDK  +K++V++ GV V   + V R   
Sbjct: 67  HGAFGEDGRIQAILESLGIAYGGPGVMSSSVCMDKELTKKIVATYGVRVAKGLSVRRGET 126

Query: 116 -FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +    ++KP  GGSS+G+  ++ ++ +   L    +     + L+E+ + G
Sbjct: 127 ADFKTISEKLGKRIIVKPNSGGSSIGVSFVESEEQLQEALKLVFTM--DKEALVEEVLSG 184

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E++  V+        +I     D++ Y+ KYS   +   +  +   +I +E+ + A+ +
Sbjct: 185 TEISVPVIDGKVYPTLKIEAVAGDYFDYKSKYSDGGAREFV-FEFEKEIQQEIDKFAYDS 243

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + A+ C G SR DF+   +  K +++E+N  PGMT  S+ P+  A  GYS+ E L  ++E
Sbjct: 244 YYAMKCEGFSRVDFMV--VGDKPYFMEVNTLPGMTAASLLPKSTASKGYSYSETLDLLIE 301

Query: 295 DA 296
            +
Sbjct: 302 AS 303


>gi|227543554|ref|ZP_03973603.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300908262|ref|ZP_07125728.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
 gi|227186481|gb|EEI66552.1| D-alanine--D-alanine ligase [Lactobacillus reuteri CF48-3A]
 gi|300894689|gb|EFK88045.1| D-alanine--D-alanine ligase [Lactobacillus reuteri SD2112]
          Length = 378

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMDMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P +        +      +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWSRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  +++   +              +  +  +     AV   
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               +    +           LP K+P  +  E+  +A  A++A+G +G++R DFL D  
Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  +++ 
Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347


>gi|134103809|ref|YP_001109470.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
 gi|133916432|emb|CAM06545.1| D-alanine--D-alanine ligase B [Saccharopolyspora erythraea NRRL
           2338]
          Length = 315

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 88/309 (28%), Positives = 152/309 (49%), Gaps = 16/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GE+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T   
Sbjct: 66  GEGENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRE 125

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V++    +P  +    + ++GD +L+E+
Sbjct: 126 LGAQSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAM--VGALSYGDTVLVEK 183

Query: 171 YVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           Y++G E+                      +  Y Y  +Y++  +T+  PA++  +     
Sbjct: 184 YIEGTEVAIGVLDGPDGPEALPAVQIEATNGVYDYTARYTAGLTTYRTPAELSPETAAAA 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  +
Sbjct: 244 GDLAVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGD 302

Query: 288 LLLWMVEDA 296
           +   +VE A
Sbjct: 303 VFATLVERA 311


>gi|322373496|ref|ZP_08048032.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
 gi|321278538|gb|EFX55607.1| D-alanine--D-alanine ligase [Streptococcus sp. C150]
          Length = 348

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+L+MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +                 ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKHILEVVGVPQVAYTVFIEGEDLEAAVARTVQKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTEPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCGLARCDFFL-AEDGTIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYTDLIKELV 333


>gi|125623230|ref|YP_001031713.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|166198487|sp|A2RI72|DDL_LACLM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|124492038|emb|CAL96965.1| D-alanine-D-alanine ligase [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|300069981|gb|ADJ59381.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 349

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 148/333 (44%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDRPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +         +        +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQVEIAQEVVEKLDFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203
              +   L ++    + ++++IEQ VD  E+ C V+G+ S          V    FY Y 
Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|269216512|ref|ZP_06160366.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
 gi|269130041|gb|EEZ61123.1| D-alanine--D-alanine ligase [Slackia exigua ATCC 700122]
          Length = 317

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 119/307 (38%), Positives = 169/307 (55%), Gaps = 14/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLH 59
           +AVL GG S ERE+SL SG ACA AL + GF V  ID  D      L     D+AF  LH
Sbjct: 12  VAVLYGGTSGEREISLKSGAACAEALAELGFSVQLIDTQDYEQLKRLIEESFDVAFLALH 71

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
           G  GEDG VQ  LE + +PYT SGILASAL+++K R+K+     G+ V PS+ V R    
Sbjct: 72  GKGGEDGTVQGFLETIGLPYTGSGILASALAVNKARAKESYERAGLLVAPSVTVGRDDPL 131

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +   +   P V+KP   GSSLG+ +++    +   +  + S     + +IE ++
Sbjct: 132 DEGFLDECIDICGMPCVVKPTTEGSSLGMTIVRDATDLRKGIETALSV--DVEAMIEGFI 189

Query: 173 DGIELTCGVMGDASL---DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G ELT GVMG+       V +I   + +FY++  KY+   S H+ PA +  ++ + VQ 
Sbjct: 190 EGTELTVGVMGNDDPVALPVIQIVPTEDEFYNFHAKYAQGGSRHLCPAPLSPELTESVQE 249

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  AH  +GCRGISR+D + D    + + LE N  PGMT  S+ P+ A  AG  F  + 
Sbjct: 250 LAVAAHSVLGCRGISRTDIMVDAE-NRCWVLETNTLPGMTGTSLVPDAARVAGMGFSRVC 308

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 309 ERLIELA 315


>gi|148241702|ref|YP_001226859.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
 gi|190359214|sp|A5GRJ7|DDL_SYNR3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147850012|emb|CAK27506.1| D-alanine--D-alanine ligase [Synechococcus sp. RCC307]
          Length = 345

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 93/336 (27%), Positives = 143/336 (42%), Gaps = 40/336 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + ++ GG S E +VS+ S    A  L        ++V  + +DR                
Sbjct: 9   VGLIFGGASGEHDVSIRSAATVAEGLSSGANKERYRVQHVYIDRQGRWWGDATARQVLSS 68

Query: 46  ---LAHLK--------PD------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
              LA           PD      + + VLHG  GEDG +Q +  L++ P+  SG+L SA
Sbjct: 69  GQALADDGSRPGFSGFPDGCLEVEIWYPVLHGPNGEDGTIQGLFSLMQRPFVGSGVLGSA 128

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--------VNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           + MDK+  K   S+ G+P  P            ++   + +  +  P  IKP   GSS+G
Sbjct: 129 VGMDKLAMKAAFSAAGLPQGPYRPVLASELVSNSQLLEELETQLGYPCFIKPANLGSSVG 188

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I        +   L  ++S +    +     V  +E            V       +D+Y
Sbjct: 189 ISKATNRSELQAGLDLAASHDSRLLVEKGLQVRELECAVLGGQHLKASVLGEVSFDADWY 248

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            YE KYSS  S+  +PA +P  I    Q LA  A QA+G  G+SR DF ++  S  +   
Sbjct: 249 DYETKYSSGLSSTQIPADLPEAISSRAQHLAIEAVQAVGASGLSRVDFFYEEASGNLLIN 308

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           EIN  PG T  S++P +   +G    EL+  ++E A
Sbjct: 309 EINTLPGFTSQSMYPMLWKASGVPLEELVHQLLELA 344


>gi|323343929|ref|ZP_08084156.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
 gi|323095748|gb|EFZ38322.1| D-alanine-D-alanine ligase [Prevotella oralis ATCC 33269]
          Length = 333

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDVKGVDWHVNFENGEVASIDRNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   K    D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVKDGKAVIFDYAYITIHGTPGENGIMQGYFELIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            S G+ V                   +  I  P  +KP   GSS G+  +K    +   L
Sbjct: 128 RSFGINVAPSLLLRRGEEDKYSEEYIEKTIGMPCFVKPAADGSSFGVSKVKNADQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
             +      D ++IE +++G E++ G        V   A        +       +    
Sbjct: 188 RVAFM--ESDDVMIEAFMEGTEISVGCYKTKKKSVVFPATEVVTTNEFFDYDAKYNGQVQ 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMT 269
            + PA+I  +  K+V       +  + C GI R D++         K+  LEIN  PGMT
Sbjct: 246 EITPARISTETAKKVAEETSKIYDILHCNGIIRIDYIITKDDAGNDKINMLEINTTPGMT 305

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  +VE+
Sbjct: 306 HTSFIPQQVHAAGLDIKDVLTDIVEN 331


>gi|194468272|ref|ZP_03074258.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
 gi|194453125|gb|EDX42023.1| D-alanine/D-alanine ligase [Lactobacillus reuteri 100-23]
          Length = 378

 Score =  155 bits (391), Expect = 8e-36,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 7   IALLFGGNSSEHDVSKRSAHNIYDALDKEKYDVSLFMFTKDGILLGNEDSQKIFDGEPED 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  F V+HGN GEDG +Q + +LL  PY  S 
Sbjct: 67  QVVAEAYQKMNMSSPLAPIMALNEQKEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSN 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASA+S DK  +K+++S  G+   P +        +      +  +     +KP K GS
Sbjct: 127 IAASAMSFDKDLTKKIISQAGIRNTPYVVVTPENRADYSWGRIEEKLGNLTFVKPAKQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  +++   +              +  +  +     AV   
Sbjct: 187 SVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIASKLGAVRVP 246

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               +    +           LP K+P  +  E+  +A  A++A+G +G++R DFL D  
Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMARIDFLVD-S 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  +++ 
Sbjct: 306 NNVPYLGEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIQL 347


>gi|313624508|gb|EFR94508.1| D-alanine--D-alanine ligase [Listeria innocua FSL J1-023]
          Length = 370

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAKPIYITNDGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTVRLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI        +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|328945544|gb|EGG39695.1| D-alanine-D-alanine ligase [Streptococcus sanguinis SK1087]
          Length = 353

 Score =  155 bits (391), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 13  LLYGGRSAEREVSVLSAESVMRAVNYDRFSVKTYFITKDGDFIQTQEFEATPAADEKLMT 72

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 73  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 132

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  +S P   KP   GSS+GI     
Sbjct: 133 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 192

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + + + L  +    +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 193 QEELRVSLELAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 250

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A  A +A+G  G+SR DF +     +VF  E+N 
Sbjct: 251 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRALGGLGLSRCDFFY-AEDGQVFLNELNT 309

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 310 MPGFTQWSMYPLLWENMGLAYPDLIEKLVGLAEEAFAKR 348


>gi|269797059|ref|YP_003316514.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
 gi|269099244|gb|ACZ23680.1| D-alanine--D-alanine ligase [Sanguibacter keddieii DSM 10542]
          Length = 317

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 99/306 (32%), Positives = 161/306 (52%), Gaps = 15/306 (4%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL  A  +V+  DVD  +   LA  +PD+ + +LHG  
Sbjct: 9   VLAGGLSHERDVSLRSGRRVAEALRSANVEVAVHDVDADLIPALAETRPDVVWPILHGAS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------ 116
           GEDG ++ +L+LL++PY  +G  AS ++  K  +K VV+  G+     + + +       
Sbjct: 69  GEDGSIRDVLDLLDVPYVGTGPRASRIAWSKPVAKSVVARAGIDTPEYVTLPQSLFRELG 128

Query: 117 ----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP +GGS+LG+ +++    +P  +   S + +G+  LIE+ V
Sbjct: 129 AQAVMSAVVDKLGLPLVVKPSRGGSALGVSLVRTVAELPQAM--VSCFAYGEVALIERAV 186

Query: 173 DGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           DG+EL   V+       T     +     Y Y+ +Y+   + +  PA++P    + V   
Sbjct: 187 DGVELAVSVVETVDGLSTLPAVEIVTEGPYDYDARYNPGRTEYFSPARLPSSHAEAVAAT 246

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+A+G R ISR+D +       + +LE+NV PGMT  S+ P+ A   G+S   L  
Sbjct: 247 AIAAHEALGLRHISRTDLIL-QADGTIQFLEVNVAPGMTETSLLPQAALAGGWSLPTLYR 305

Query: 291 WMVEDA 296
            +V+ A
Sbjct: 306 SVVDHA 311


>gi|190359179|sp|Q031X8|DDL_LACLS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 349

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 68  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +        ++        +  P  +KP   GSS+GI  +  
Sbjct: 128 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203
              +   L ++    + ++++IEQ VD  E+ C V+G+ S          V    FY Y 
Sbjct: 188 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 245

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 246 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 304

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 305 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 337


>gi|116511200|ref|YP_808416.1| D-alanyl-alanine synthetase A [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106854|gb|ABJ71994.1| D-alanine--D-alanine ligase [Lactococcus lactis subsp. cremoris
           SK11]
          Length = 367

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 149/333 (44%), Gaps = 42/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+  + F V    + +    +      D          
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAVNYSRFIVKTYFITKGGEFIKTQEFTDTPAEEEKLLT 85

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L + Y    IL+++ +MD
Sbjct: 86  NDLAESYPKISPAAIYEKDAVVFPVLHGPMGEDGSIQGFLEILRLAYVGPNILSASSTMD 145

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K V  + GVP  P +        ++        +  P  +KP   GSS+GI  +  
Sbjct: 146 KLLAKHVFEAVGVPQVPYVAAFADENQAEIAQEVVEKLEFPVFVKPANMGSSVGISKVDD 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IAVPKSDFYSYE 203
              +   L ++    + ++++IEQ VD  E+ C V+G+ S          V    FY Y 
Sbjct: 206 LADLQPALSEAY--KYDNRVVIEQGVDAREIECAVLGNNSDVSATLPGEVVKDVGFYDYN 263

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+  D+ +++Q  A  A++A+   G+SR DF        V+  E+N
Sbjct: 264 SKYIDNKIQMDIPAKVSADLAQKIQEYAKKAYKAVNGAGLSRCDFFVT-KDGNVYLNEVN 322

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 323 AIPGFTQWSMYPLLWENMGLSYSDLIEKLVDLA 355


>gi|239982537|ref|ZP_04705061.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291454379|ref|ZP_06593769.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
 gi|291357328|gb|EFE84230.1| D-alanyl-alanine synthetase A [Streptomyces albus J1074]
          Length = 390

 Score =  155 bits (390), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 98/362 (27%), Positives = 154/362 (42%), Gaps = 69/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S+ +G A   +++ + + V  I +    G VL   +P         
Sbjct: 24  VAVVFGGRSSEHGISVVTGGAVLGSIDRSRYDVLPIGITTEGGWVLTADEPARMAITERT 83

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D+ F VLHG +GEDG  Q 
Sbjct: 84  VPDVDALAEPGEGTVVLPVAPGNREVLYSEPGSVPKALGDVDVVFPVLHGPYGEDGTFQG 143

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------------ 118
           +LEL  IPY  SG+LASA+  DK   K+V +S G+PV P +++                 
Sbjct: 144 LLELAGIPYVGSGVLASAVGQDKEYMKRVFTSFGLPVGPYLVIRPREWDADEAAARARVI 203

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D       P  +KP +GGSS+GI  +   + +   L ++    H  ++L+E  + G E+ 
Sbjct: 204 DFAGEHGWPLFVKPARGGSSVGITKVDGPEGLDAALAEAR--RHDPKVLVESLLRGREIE 261

Query: 179 CGV--MGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           CGV    D         +P    + +         ++  ++PA +  +   EVQRLA  A
Sbjct: 262 CGVLEFEDGPRASVPAEIPPVQAHDFYDFEAKYIDSAPGLVPAPLTEEQTAEVQRLAVEA 321

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A  C G+ R+DF            EIN  PG TP+S++P M   +G  +  L+  +V+
Sbjct: 322 FEAASCEGLVRADFFLTE-DGGFVINEINTMPGFTPISMYPRMWQESGVDYPALVDQLVQ 380

Query: 295 DA 296
            A
Sbjct: 381 AA 382


>gi|229463100|gb|ACQ66099.1| D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +     +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYLMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|55821559|ref|YP_140001.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMG
           18311]
 gi|81560260|sp|Q5M355|DDL_STRT2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55737544|gb|AAV61186.1| D-alanine-D-alanine ligase [Streptococcus thermophilus LMG 18311]
          Length = 348

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP     +                 ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|296119642|ref|ZP_06838200.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
 gi|295967525|gb|EFG80792.1| D-alanine--D-alanine ligase [Corynebacterium ammoniagenes DSM
           20306]
          Length = 358

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 87/351 (24%), Positives = 149/351 (42%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AV+ GG S+E  VS  +  A  S L+   +++  I + +     +              
Sbjct: 7   VAVIYGGKSTEHSVSCVTAGAIMSHLDPERYEIIPIAITKEGTWTIGVTEGLEIKDGKLP 66

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                       H   D+ F  LHG  GEDG VQ + E+  IPY
Sbjct: 67  EVEEADELTVSLNPRGDGQIHNVTRGTLHADIDVVFPALHGVNGEDGTVQGVFEMAGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGG 136
             +G+++SA+ MDK   ++++ + G+PV   ++       T   +  +  P  +KP +GG
Sbjct: 127 VGTGVMSSAVCMDKEFMRKLMVAEGLPVTRDVILRGRTELTDAEKDHLGLPVFVKPARGG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +     +P     + +    D++++E  + G E+  GV+   + ++       
Sbjct: 187 SSIGVSKVNTWDELPA--AIAEAAAFDDKVIVEAELVGAEVEVGVLEYPTGELVASVPAK 244

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     FY ++ KY     T  +PA       K +Q LA    QA+ C G+SR DF
Sbjct: 245 LNGTEDSDEGFYGFDTKYLDNTVTATIPAPFDEATTKALQDLAVETFQALNCEGLSRVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                       EIN  PG TP+S++P++   +G S+ ELL  ++  A   
Sbjct: 305 FVTEQG--PMINEINTLPGFTPISMYPQVFLASGVSYPELLDTLIATALAK 353


>gi|284031545|ref|YP_003381476.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
 gi|283810838|gb|ADB32677.1| D-alanine/D-alanine ligase [Kribbella flavida DSM 17836]
          Length = 342

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 144/340 (42%), Gaps = 46/340 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG+S E  +SL S +  A +L+   ++   + + R    +L              
Sbjct: 3   IGILFGGVSEEHPISLKSAREVARSLDPERYEPYYVGITRGGAWMLCDGPDDDWENGTGR 62

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 63  PAVLSPDRTVHGLLVLEQGRYETIRLDVVLPVLHGRLGEDGAIQGLLELSGIPYVGCDIP 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V  S G+       V    +     ++ P  +KP + GSS G+  + 
Sbjct: 123 SSALCMDKSLAYVVARSAGIATPNFWTVAAKELPDA-DLTYPVFVKPARSGSSFGVSKVT 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   +P  +    +  +  ++LIEQ V G E+ C V+G+    V       +  + +   
Sbjct: 182 QADDLPSAV--EVASQYDSKVLIEQAVVGREIGCAVLGNGGDLVVGEVDHIALSHGFFRI 239

Query: 206 YSS-------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +          NST ++PA IP      V+  A   ++A+GC G++R D         V 
Sbjct: 240 HQESEPESGSDNSTAIVPADIPAASRTLVRDTAKAVYRALGCGGLARVDLFLTE-DGAVV 298

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             E+N  PG+T  S +P M A AG S  E++  +V  A  
Sbjct: 299 LNEVNTLPGLTSYSRYPRMMAAAGLSMGEVIDRVVSLALT 338


>gi|116628273|ref|YP_820892.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus LMD-9]
 gi|122267132|sp|Q03JC6|DDL_STRTD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116101550|gb|ABJ66696.1| D-alanine--D-alanine ligase [Streptococcus thermophilus LMD-9]
 gi|312278896|gb|ADQ63553.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Streptococcus
           thermophilus ND03]
          Length = 348

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 142/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP                       ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTGYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|315223279|ref|ZP_07865140.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
 gi|315187711|gb|EFU21465.1| D-ala D-ala ligase [Streptococcus anginosus F0211]
          Length = 348

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 93/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+ER+VS+ S ++   A++   F V    + ++   +               
Sbjct: 6   IILLYGGRSAERKVSVLSAESVMRAIDYDKFFVKTYFITQAGDFIKTQEFSSKPTDDEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++
Sbjct: 66  MTNDTVVASQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V++S G+P  P + V       + +      ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L  +    +  ++LIEQ V+  E+  G++G+     +     V    FY Y
Sbjct: 186 ENQDELRSALKLAF--KYDSRVLIEQGVNAREIEVGLLGNEEAQSSLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAK+  D+   +++ A  A  AIG  G+SR DF +     ++   E+
Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLSRCDFFYTDK-GEILLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336


>gi|225412310|ref|ZP_03761499.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
 gi|225042103|gb|EEG52349.1| hypothetical protein CLOSTASPAR_05532 [Clostridium asparagiforme
           DSM 15981]
          Length = 353

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/343 (26%), Positives = 148/343 (43%), Gaps = 53/343 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG SSE  VS  S       ++   +++  I +      +               
Sbjct: 6   VVVLFGGQSSEHVVSCMSAANVIDRIDQEKYELLLIGITEEGRWIRTECVEDIRSGSWRD 65

Query: 46  -----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                     +  D+ F VLHG +GEDG VQ +LEL +IPY   
Sbjct: 66  GTVSAVISPDATEKCVILMDGESAERVPVDVVFPVLHGLYGEDGTVQGLLELAKIPYVGC 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLK 134
           G+LASA+SMDK+ +K +V + GV       V R  +          +   S P  IKP  
Sbjct: 126 GVLASAVSMDKLFTKIIVDNLGVRQAEYEPVTREQLAHMEAVTARIEGHFSYPVFIKPSN 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----GDASLDVT 190
            GSS G+   +  + +   LL+++   H  ++L+E+ + G E+ C V             
Sbjct: 186 AGSSRGVSKAENREELEAGLLEAA--RHDRKILVEEAIVGREVECAVFGGGAEAVVASGV 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +  ++FY +E KY +  S  V   ++P D  + +++ A    QA+   G++R DF  
Sbjct: 244 GEILAAAEFYDFEAKYYNEESRTVTDPELPGDAAERIRQTAVSVFQAVDGYGLARVDFFV 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                +V + EIN  PG T +S++P +    G S  EL+  ++
Sbjct: 304 TG-DGEVVFNEINTLPGFTAISMYPMLWEARGVSKEELVEKLI 345


>gi|157149874|ref|YP_001450726.1| D-alanyl-alanine synthetase A [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|189083061|sp|A8AY66|DDL_STRGC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157074668|gb|ABV09351.1| D-Ala-D-Ala ligase [Streptococcus gordonii str. Challis substr.
           CH1]
          Length = 348

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 161/339 (47%), Gaps = 44/339 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGDFIKTQEFSSKPAEDVRLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NDTVDMSRKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  +S P   KP   GSS+GI     
Sbjct: 128 KITTKRVLESAGIAQVPYVALVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L  +    +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 188 QEELRASLDLAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A +A +AIG  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAEIAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDASCLR 300
            PG T  S++P +    G ++ +L+  +V   E+A   R
Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVALAEEAFAKR 343


>gi|88809162|ref|ZP_01124671.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
 gi|88787104|gb|EAR18262.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7805]
          Length = 353

 Score =  155 bits (390), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 82/344 (23%), Positives = 137/344 (39%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV----------- 45
           + V+ GG S E  VS+ S      AL        F+V  + +DR                
Sbjct: 8   VGVVFGGESGEHAVSIQSALTVIKALIAPDNQDRFEVIPVYIDREGRWWGPTVAQRVLDQ 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                 +     D+ + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  NHAINSEDLPQPLPAPGLRQWPVDPDTVDIWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS-----------ILVNRFTMDSQHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+   P              + +     +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYLGLNAIDLEEPERLEQLLTRLEKELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L Q++  +    +        +E            V   
Sbjct: 188 ANLGSSVGITKARTRDELLDGLHQAAVLDTRLLVEQGVKARELECAVLGRRHLRASVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y YE KY+   S  ++PA +P  + +++Q +A  A QA+   G +R D  +D 
Sbjct: 248 IRFDADWYDYETKYTEGRSQTLIPAPLPASVSQQIQAMAIRACQAVHAYGQARVDVFYDE 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S +++  EIN  PG T  S++P +    G    +L+  +V+ A
Sbjct: 308 TSGQIWLNEINTLPGFTSQSMYPTLWEATGIPLPQLVAQLVDTA 351


>gi|315302237|ref|ZP_07873149.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
 gi|313629387|gb|EFR97608.1| D-alanine--D-alanine ligase [Listeria ivanovii FSL F6-596]
          Length = 370

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 143/349 (40%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLNKFEAQPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  AAADKVELALVETEKSAGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P                +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFQDEMVTEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      Q +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVIAREIEMGVLGNDTPICSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I  +++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILAQMKEYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYPALIERLVDLA 354


>gi|296126249|ref|YP_003633501.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
 gi|296018065|gb|ADG71302.1| D-alanine/D-alanine ligase [Brachyspira murdochii DSM 12563]
          Length = 322

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 99/304 (32%), Positives = 151/304 (49%), Gaps = 16/304 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55
           +AVL GG + EREVSL SGK    AL   E+       IDV     +   L     +  +
Sbjct: 20  IAVLHGGQNEEREVSLRSGKNVYKALTSFEELKDNCILIDVQDAYDLVKTLKENNIEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---L 112
           N+LHG  GEDG +Q +LE L I YT   IL SA+ M+K+ +K++  S  V     +    
Sbjct: 80  NILHGTSGEDGTIQGLLESLNIKYTGENILVSAVCMNKVYTKRIWKSSNVSTSDFVLLKD 139

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           V      S   ++ P +IKP+  GSS+G+ +IK  +     + +       +   +E Y+
Sbjct: 140 VKDVNNTSAGGLNFPIIIKPISSGSSVGVSLIKNKEEFDNTIKKIEDI---NNYFLEPYI 196

Query: 173 DGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G E+T G+     D  +        K++ Y Y+ KY+   +   +PAKI  DI K+V  
Sbjct: 197 KGKEITVGLVKEEDDIYVFPILGINSKNEIYDYDAKYTPGKTELEVPAKISKDIEKKVIE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
               A+  +GC G+SR D +    + +V+ +E+N Q GMT  S  P MA   G  F +L 
Sbjct: 257 TCKRAYTVLGCGGLSRIDAII--ANDEVYLMEVNTQSGMTDTSDVPAMAKNCGIEFADLA 314

Query: 290 LWMV 293
           L+++
Sbjct: 315 LYIL 318


>gi|314987134|gb|EFT31226.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
          Length = 315

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/308 (25%), Positives = 141/308 (45%), Gaps = 16/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRPVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVAAAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP +GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G EL  G++  +            P    Y Y   Y+   +    PA I     +  
Sbjct: 183 FIVGTELAIGMITTSEGTRVLPAVEIRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P     AG    E
Sbjct: 243 TAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGE 301

Query: 288 LLLWMVED 295
           +   +V+D
Sbjct: 302 VCSRLVDD 309


>gi|319938752|ref|ZP_08013116.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
 gi|319811802|gb|EFW08068.1| D-alanine-D-alanine ligase [Streptococcus anginosus 1_2_62CV]
          Length = 348

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/334 (27%), Positives = 158/334 (47%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +L GG S+ER+VS+ S ++   A+    F V    + ++   +               
Sbjct: 6   IILLYGGRSAERKVSVLSAESVMHAINYNKFFVKTYFITQAGDFIKTQEFSSKPADNEKL 65

Query: 47  ---------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+++
Sbjct: 66  MTNDSVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V++S G+P  P + V       + +      ++ P   KP   GSS+GI   
Sbjct: 126 MDKITTKRVLASAGIPQVPYVAVIEGENIDEKIAAVEANLTYPVFTKPSNMGSSVGISKS 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +    +   L  +    +  ++LIEQ V+  E+  G++ +  +  +     V    FY Y
Sbjct: 186 ENQDELRSALELAF--KYDSRVLIEQGVNAREIEVGLLENEGVKSSLPGEVVKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E KY     T  +PAK+  D+   +++ A  A  AIG  G++R DF +     ++F  E+
Sbjct: 244 EAKYIDNKITMDIPAKLSEDVIATMRQYAEKAFHAIGGVGLARCDFFYTDK-GEIFLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWENMGISYTDLIEKLVLLA 336


>gi|300870859|ref|YP_003785730.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
 gi|300688558|gb|ADK31229.1| D-alanine-D-alanine ligase [Brachyspira pilosicoli 95/1000]
          Length = 323

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 91/301 (30%), Positives = 149/301 (49%), Gaps = 12/301 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL---EDAGFKVSQIDVDR--SVGLVLAHLKPDLAF 55
           +AVL GGIS EREVSL SGK    AL   ++       IDV     +  +L     +  +
Sbjct: 20  IAVLHGGISDEREVSLRSGKNVFEALTSYKELKDSTILIDVKDHYELVEILKKENVEYCY 79

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           N+LHG FGEDG +Q +L+ L I YT    L S+L M+K+ +K++  S  +      L+  
Sbjct: 80  NILHGTFGEDGTIQGLLDCLNIKYTGENTLVSSLCMNKVYTKRIWLSSNISTVDFQLLED 139

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              ++    + P ++KP+  GSS+G+ +IK  +     +      +      +E Y+ G 
Sbjct: 140 AVKNNNISFNFPIILKPISSGSSVGVSLIKTKEEFDNIVKDIKDIH---NYFLEPYIKGK 196

Query: 176 ELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           E+T G+     D  +       PK++ Y Y+ KY+   +   +PAK+  DI K++     
Sbjct: 197 EVTVGLVRDNDDIYVFPILGINPKNEIYDYDAKYTPGKTEMEIPAKLDKDIEKKLIENCK 256

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A+  +GC G+ R D +       +  +E+N Q GMT  S  P MA      F +++L++
Sbjct: 257 KAYDVLGCEGLCRIDAIIS-DDGFINLMEVNTQGGMTNTSDIPAMARNINMPFEDVVLYI 315

Query: 293 V 293
           +
Sbjct: 316 L 316


>gi|210634764|ref|ZP_03298292.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
 gi|210158704|gb|EEA89675.1| hypothetical protein COLSTE_02219 [Collinsella stercoris DSM 13279]
          Length = 319

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 114/307 (37%), Positives = 160/307 (52%), Gaps = 15/307 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD-RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S ERE+SL+SGK    AL +AG+  V  ID    +    +     D AF  L
Sbjct: 11  IAVLAGGTSDEREISLASGKNVVHALTEAGYGSVELIDPAAPTFLERMTGDGWDAAFIAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +LE L IPYT S  LAS ++MDK  SK +    G+PV PS+   R  M
Sbjct: 71  HGIGGEDGRIQHVLEFLGIPYTASSPLASGIAMDKDLSKLLYRRAGLPVAPSVTFGRADM 130

Query: 119 DSQHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                I         +KP+  GSS GI + K    +   +  +    HG+++++E+ V G
Sbjct: 131 LPLEEIVAVVGEQSFVKPVVNGSSYGISLAKDPSELANAIEVAF--EHGEKVMVEKRVFG 188

Query: 175 IELTCGVMGDASLDVTEIA-----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            E +   +GD                +S+FY  E+KY+     H +PA +P D+Y +VQ 
Sbjct: 189 TECSVAAVGDGETLRALPVVEILVPEQSEFYDLEVKYADPKDLHRIPACLPEDVYAQVQE 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH+A+G  GISR+D +          LE N  PGMTP S+ P+ A +AG  F EL 
Sbjct: 249 IACRAHEALGLYGISRTDVIVTEDG--PVILETNNIPGMTPESLVPDEARHAGIPFSELC 306

Query: 290 LWMVEDA 296
             +V+ A
Sbjct: 307 AELVDLA 313


>gi|322516239|ref|ZP_08069171.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
 gi|322125303|gb|EFX96668.1| D-alanine-D-alanine ligase [Streptococcus vestibularis ATCC 49124]
          Length = 348

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +            ++   ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLESAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA +P ++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPAHVPAEVMAQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSDLIKELV 333


>gi|94263585|ref|ZP_01287395.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93456005|gb|EAT06156.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 103/294 (35%), Positives = 159/294 (54%), Gaps = 13/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLKVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             H    L+SPP V+KP++ GSSLG+ ++  ++ +   L  +    H DQ+++EQ+V G 
Sbjct: 129 EPHRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPALETAF--AHDDQVMVEQFVAGR 186

Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T         +       +P  +  F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             AH+A+  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F
Sbjct: 247 CRAHRALRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDF 298


>gi|254967066|gb|ACT97571.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + S G+ V  S+           +    I  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   +    +++E Y+DG E+T G+               V  ++F+ Y+ K  +    
Sbjct: 188 VAFMESSD--VMVEAYLDGTEITQGIYKTRERSVPFPITEVVTTNEFFDYDAK-YNGQVD 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N  PGMT
Sbjct: 245 EITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  ++E+
Sbjct: 305 TTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|254967061|gb|ACT97568.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 332

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 142/326 (43%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +DR+  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYDVYIVDVRGTDWRVQLPDGEEAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK    + 
Sbjct: 68  SFVKTDGTAVVFDYAYITIHGQPGENGPMQGYFDLIHVPYSTSGVLVEAMTFDKFVLNRY 127

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + S G+ V  S+           +    I  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LGSFGIHVADSVLLRRGETYNEEEIAKRIGMPCFVKPANDGSSFGVSKVKNADQLEPALR 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYELKYSSLNST 212
            +   +    +++E Y+DG E+T G+               V  ++F+ Y+ K  +    
Sbjct: 188 VAFMESSD--VMVEAYLDGTEITQGIYKTRERSVPFPITEVVTTNEFFDYDAK-YNGQVD 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA+I  +  + V  +    +  +   GI R D++   D    +V   LE+N  PGMT
Sbjct: 245 EITPARISPETAERVTEITSRIYDILHANGIIRIDYIITHDAEGNEVINMLEVNTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  ++E+
Sbjct: 305 TTSFIPQQVRAAGLDIKDVLTEIIEN 330


>gi|254967107|gb|ACT97596.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 141/322 (43%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           +A+LMGG SSE EVSL S       L+   ++   I + +                    
Sbjct: 4   IAILMGGYSSEAEVSLKSAATVVECLDKNKYRPYPILIAKDRWVYTDPKGQEFPIDKNDF 63

Query: 43  GLVLAHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L +   K     AFN +HG  GEDG +QA    + IP T   + ASAL+ +K     V+
Sbjct: 64  SLTIGGEKITFACAFNAIHGTPGEDGHLQAYFSFVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +NR    S   I      P  +K  + GSS+G+     ++ I   + +
Sbjct: 124 KPYGIPRAKAYYLNRGEHFSTREIIKTVGLPCFVKANRSGSSIGVFKAYNEKDIDEAIEK 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
           +       +++IE+++ G E++ GV+                   +    +     S  +
Sbjct: 184 AFEV--DSEIIIEEFLKGTEVSVGVITYRGKKRVLPITEIVSENDFFDHEAKYEGKSQEI 241

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  +  K+V+ +A   +  +  +G SRS+++   ++ +   LE+N  PG+T  SI 
Sbjct: 242 TPARLSEEERKKVEEIALRVYNLLQMKGFSRSEYIL--VNGQPHLLEMNTTPGLTKASIL 299

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+ A  AG +   L    +E+A
Sbjct: 300 PQQAKAAGITLANLFDNAIEEA 321


>gi|322385093|ref|ZP_08058740.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
 gi|321270717|gb|EFX53630.1| D-alanine-D-alanine ligase [Streptococcus cristatus ATCC 51100]
          Length = 348

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/332 (26%), Positives = 153/332 (46%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           ++ GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LIYGGRSAEREVSVLSAESVMRAVNYDKFSVKTYFITKAGDFIKTQEFTEKPAADEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE+L +PY    IL+S+++MD
Sbjct: 68  NATVDVSQQVKPSDIYEENAVVFPVLHGPMGEDGSIQGFLEVLRLPYVGCNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++ S G+P  P +       +     + +  ++ P   KP   GSS+GI   + 
Sbjct: 128 KITTKRILESAGIPQVPYVAVIEGENLEEKIAEIEEKLTYPIFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + +   L  +    +  ++LIEQ V+  E+  G++G+  +  T     V    FY YE 
Sbjct: 188 QEELRAALDLAF--KYDSRVLIEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYEA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +P KI   +   ++  A  A +A+G +G++R DF +      +F  E+N 
Sbjct: 246 KYIDNKITMDIPVKISDGVISVMRTNAETAFRALGGQGLARCDFFYTEE-GDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G  + +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWENMGLPYSDLIEKLVNLA 336


>gi|313885390|ref|ZP_07819140.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619120|gb|EFR30559.1| D-ala D-ala ligase N-terminal domain protein [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 361

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 150/346 (43%), Gaps = 51/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPD--- 52
           + VL GG+S E ++S+ S     +AL +A + V    +++         V   L  D   
Sbjct: 3   IIVLYGGLSPEHDISILSATNVINALLEADYSVQPYYINKEGKWLKAPLVTEKLASDTLL 62

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F VLHG  GEDG +Q  LE+L +PY
Sbjct: 63  QLKQAHAASWGDGKGLTSTGVWIQPGQIAEDDAVVFPVLHGPNGEDGTIQGFLEVLNLPY 122

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+ ASA  MDK+ SKQ+    G+P  P +  ++              +  +  P+ +
Sbjct: 123 VGAGVTASATGMDKIISKQLFDQAGLPQVPYVYFDKRDWLQDQSRWIQKCEGNLLYPFFV 182

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+G+  ++  Q +   +  +  ++    +      +  E+      D    V 
Sbjct: 183 KPANMGSSVGVSRVENSQELIKAVDVALEFDRRIVVEQGISANECEVAVLGNDDIHASVV 242

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V  SDFY Y+ KY +      +PA +P  +  +++  A  A++A+   G++R+DF  
Sbjct: 243 GRLVKSSDFYDYDEKYINNTVEMEIPANLPEAVSDKIKDYALKAYRAVDGTGLTRADFFV 302

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              +  ++  E+N  PG T  S++P +    G ++R+L+  +++ A
Sbjct: 303 TA-NYDIYINEVNTMPGFTQFSMYPSLWQATGLNYRDLIDELIQLA 347


>gi|296130149|ref|YP_003637399.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296021964|gb|ADG75200.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 389

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 92/358 (25%), Positives = 146/358 (40%), Gaps = 65/358 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + VL GG S E  +S ++      A++   + V  + +      VLA             
Sbjct: 27  VMVLFGGRSGEHAISCATAGGVLRAIDRDRYDVVAVGITSDGRWVLADDDADHWAIRDGR 86

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG FGEDG +Q +LEL
Sbjct: 87  LPRVEDTATHVLLPQGTTDREVQVLRDGVLGAPLGAVDVVFPLLHGPFGEDGTLQGMLEL 146

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------PP 127
            ++ Y  SG+LASA+ MDK   K V++  G+ V P  ++          +         P
Sbjct: 147 ADVRYVGSGVLASAVGMDKHMMKLVLAGSGLAVGPFRVLPPGREPDAATLDAVVADLGLP 206

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP + GSSLG  + + D    L    +++  H  ++++E  + G E+ CGV+G  S 
Sbjct: 207 LFVKPARAGSSLG--ISRVDDKADLADAIAAARVHDPKVIVEAALFGREVECGVLGGRSG 264

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAI 238
                ++P     +                       PA +P D+   VQ +A  A +A+
Sbjct: 265 APPRASLPGEIVVTDARHSFYDFEAKYLDEAGVTLSCPADLPDDVVARVQDVAVRAFEAV 324

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G++R D    P   +V   EIN  PG TP S++P M A +G  +  L+  +V  A
Sbjct: 325 GCEGLARVDVFVTP-DGEVVVNEINTMPGFTPYSMYPRMWAVSGLDYASLVDELVGLA 381


>gi|160944621|ref|ZP_02091848.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443805|gb|EDP20809.1| hypothetical protein FAEPRAM212_02134 [Faecalibacterium prausnitzii
           M21/2]
          Length = 364

 Score =  154 bits (389), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG+SSE EVS  S       ++ + ++V  + + +    +               
Sbjct: 9   VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  I 
Sbjct: 69  ELPGNMPCVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129
           Y   G+LAS++ MDK  +  +  + GVP    +  NR+             +  +  P  
Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +   + +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 189 VKPANAGSSVGISKVSNQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A
Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355


>gi|262283026|ref|ZP_06060793.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
 gi|262261278|gb|EEY79977.1| D-alanyl-alanine synthetase A [Streptococcus sp. 2_1_36FAA]
          Length = 348

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 158/332 (47%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S+EREVS+ S ++   A+    F V    + +    +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDLFSVKTYFITKEGYFIKTQEFEAKPVADEKLMT 67

Query: 47  -------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    +KP        + F VLHG  GEDG +Q  LE+L++PY    IL+S+L+MD
Sbjct: 68  NATVDMSRKIKPSDIYEAGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCNILSSSLAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       + +   + +  +S P   KP   GSS+GI     
Sbjct: 128 KITTKRVLESAGIAQVPYVAVVDGEDLEQKIQEIEEKLSYPVFTKPSNMGSSVGISKSDN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
            + + + L  +    +  ++L+EQ V   E+  G++G+A +  +     V    FY Y+ 
Sbjct: 188 QEELRVSLELAF--KYDSRVLVEQGVTAREIEVGLLGNADVKSSLPGEVVKDVAFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++P  +   +++ A  A +AIG  G+SR DF +     +VF  E+N 
Sbjct: 246 KYIDNKITMAIPAQLPEGVVNTMRQNAETAFRAIGGLGLSRCDFFYTE-DGQVFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWENMGLAYPDLIEKLVRLA 336


>gi|21674167|ref|NP_662232.1| D-alanine-D-alanine ligase A [Chlorobium tepidum TLS]
 gi|39930903|sp|Q8KCR8|DDL_CHLTE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21647328|gb|AAM72574.1| D-alanine--D-alanine ligase A [Chlorobium tepidum TLS]
          Length = 364

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/340 (27%), Positives = 159/340 (46%), Gaps = 57/340 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+  GG S+E E+S+ S ++ A+ ++   +++S + +DR                    
Sbjct: 6   VALFFGGKSAEHEISIISARSIAAQIDRNRYELSPLYIDRDGKWHASECSQQVLDTDIAA 65

Query: 45  VLAHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
           +L    P                            D+AF  LHG++GEDG +Q  L+   
Sbjct: 66  LLRSGTPESAGKRLDELTAAAAGECFDFGSFLKNTDVAFIALHGSYGEDGKLQGCLDTFG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127
           IPYT  G+ ASAL+MDK+ +K    + G+ V   + +      +  L            P
Sbjct: 126 IPYTGCGLTASALAMDKVLTKLCAMNAGIAVAEFMTITSCAYMANPLETIVEITKRFDWP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  ++  + +   L  +       + L+E  + G E+   V+G++  
Sbjct: 186 LFVKPASLGSSVGISKVRNAEELAAALENACGL--DSKALVEAAISGREIEVAVLGNSDP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +E    +P SDFYSYE KY    +  V+PA +P  + +EV++ A    +A+GC G++R
Sbjct: 244 LASEPGEIIPGSDFYSYEDKYIKNEAKIVIPADLPEGVAEEVRKAALTVFKALGCEGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            DF  +  + +V   EIN  PG T +S++P M A +G  F
Sbjct: 304 VDFFVENGTNRVILNEINTIPGFTDISMYPMMMAASGIGF 343


>gi|320532833|ref|ZP_08033608.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
 gi|320134948|gb|EFW27121.1| D-ala D-ala ligase [Actinomyces sp. oral taxon 171 str. F0337]
          Length = 315

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 140/307 (45%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLRTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNVLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   +   + + + ++ LIE+
Sbjct: 128 MGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+           V       Y  + +Y+   S + +PA++   + + V+
Sbjct: 186 YVPGTELAVSVVDTGEGPHALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDDAVIETVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  EL
Sbjct: 246 ATAVTVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAEAEG-SLEEL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|254515239|ref|ZP_05127300.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
 gi|219677482|gb|EED33847.1| D-alanine--D-alanine ligase B [gamma proteobacterium NOR5-3]
          Length = 315

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 105/282 (37%), Positives = 143/282 (50%), Gaps = 6/282 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG S EREVSLSS K   +AL D G++   +D              D+AFN+ HG 
Sbjct: 13  AVLFGGTSGEREVSLSSAKTVLAALADGGYQPLALDTGEPEWWTGLK-GVDIAFNIQHGV 71

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG+ Q +L  L +  T S +L SAL+MDK+RSKQ+  + G+P     LVN  T    
Sbjct: 72  GGEDGVTQGLLHSLGVVGTGSQVLGSALAMDKLRSKQIWRALGLPTADFALVNAHTDAQA 131

Query: 122 HLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            L       +KP   GSSLG+  +   +S        S+   GDQ+L E+++DG E T  
Sbjct: 132 LLADWGAAFVKPCSEGSSLGMTRVDSPESFLQA--CESAAVFGDQILAERFIDGPEYTVA 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L          +FY YE KY +  + + +P  +  D    +  LA  A  A+GC
Sbjct: 190 ILGDRALPPIH-IESAREFYDYEAKYKANTTRYNIPCGLSADEETALCTLALKAFAALGC 248

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               R D + D  S K   LE+N  PGMT  S+ P  A  AG
Sbjct: 249 SVWGRVDLMRD-SSGKFQLLEVNTVPGMTDHSLVPMAATAAG 289


>gi|34763164|ref|ZP_00144131.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|237742548|ref|ZP_04573029.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294784929|ref|ZP_06750217.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
 gi|27887162|gb|EAA24266.1| D-alanine--D-alanine ligase [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|229430196|gb|EEO40408.1| D-alanine-D-alanine ligase [Fusobacterium sp. 4_1_13]
 gi|294486643|gb|EFG34005.1| D-alanine--D-alanine ligase [Fusobacterium sp. 3_1_27]
          Length = 287

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 100/296 (33%), Positives = 157/296 (53%), Gaps = 15/296 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV MGG SSE+E+SL SG+A   +L+   +    + +D ++          DLA+ VLH
Sbjct: 3   IAVFMGGTSSEKEISLKSGEAVLESLKKQSYDAYGVILDEKNQVTAFLDNDYDLAYLVLH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GE+G +QA+L++L   YT SG+LASA++MDK ++K       +     I   +    
Sbjct: 63  GGNGENGKIQAVLDILGKKYTGSGVLASAITMDKDKTK------QIAQSVGIKTPKAYRT 116

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            + +   P +IKP+  GSS G+ +    +     + +        + +IE Y+ G ELT 
Sbjct: 117 VEEIEKFPVIIKPVDEGSSKGVFLCNNREEAEKAVKKIV------RPIIEDYIVGEELTV 170

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           GV+   +L V +I       Y Y+ KY+   S H  PAKI    YKE  ++A   H   G
Sbjct: 171 GVLNGEALGVLKIIPQADVLYDYDSKYAKGGSIHEFPAKIENKSYKEAMKIAEKIHSEFG 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +G SRSDF+      ++++LE+N  PGMT  S+ P++A   GY+F +++   VE 
Sbjct: 231 MKGTSRSDFILSE--GELYFLEVNSSPGMTKTSLIPDLATLKGYTFDDVVRITVET 284


>gi|126643341|ref|YP_001086325.1| D-alanine--D-alanine ligase [Acinetobacter baumannii ATCC 17978]
          Length = 286

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/285 (33%), Positives = 144/285 (50%), Gaps = 10/285 (3%)

Query: 15  SLSSGKACASALEDAGFKVSQIDV-DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           SL SG+A   AL  +G +    D  DRSV  ++     D AF VLHG  GEDG +Q +LE
Sbjct: 2   SLDSGQAVLDALLRSGVQAEAFDPQDRSVTELV---NYDRAFIVLHGRGGEDGQIQGVLE 58

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIK 131
            L IPYT +G+  SA+ MDK+++KQ+     +P  P   I            +  P +IK
Sbjct: 59  WLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYRIITKETDLDSVIAELGLPVIIK 118

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V  
Sbjct: 119 PVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVIR 176

Query: 192 IAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           +  P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D + 
Sbjct: 177 LQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAMQ 236

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           D      + LE+N  PGMT  S+ P+ A   GYSF EL + ++E 
Sbjct: 237 DEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILEQ 280


>gi|212550473|ref|YP_002308790.1| D-alanyl-alanine synthetase A [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|226726290|sp|B6YQA7|DDL_AZOPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212548711|dbj|BAG83379.1| D-alanine-D-alanine ligase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 324

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 31/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE  +SL S +    +++   +    + + R+   V               
Sbjct: 4   VAIVSGGYSSECVISLKSAEEVYLSIDKTRYNPYIVLITRNGWTVQGGNKTEFPINKNDF 63

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D A+ ++HG  GEDGL+Q  L++L IPY+  G+L+++++ +K      +
Sbjct: 64  SFIYKGKQIRFDFAYIIIHGTPGEDGLLQGYLDILNIPYSCCGVLSASITFNKYFCNNYL 123

Query: 101 SSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
              GV    SI                 +  P ++KP  GGSS G+  +     I L + 
Sbjct: 124 RGFGVETAKSILLKQREQIISPERIIDKLGLPLIVKPNDGGSSFGVTKVTNITQIQLAIR 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNST 212
            +   N G+ +LIE ++ G E+TCG     +          + K+DF+ +E KY+     
Sbjct: 184 NAF--NEGEGVLIESFIPGTEITCGYYKTKNKQVTLPITEIISKNDFFDFEAKYNPGMVE 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I   +  E+Q L    +  +G +GI R D++  P   ++  LE+N  PGMT  S
Sbjct: 242 EITPARISKKLTDEIQTLTAHIYDWVGAKGIIRIDYIISPKK-EIKMLEVNTIPGMTATS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG + +E+L  ++E 
Sbjct: 301 FIPQQIRAAGLNLKEILTEIIES 323


>gi|331002650|ref|ZP_08326165.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
 gi|330407063|gb|EGG86567.1| hypothetical protein HMPREF0491_01027 [Lachnospiraceae oral taxon
           107 str. F0167]
          Length = 349

 Score =  154 bits (388), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 140/346 (40%), Gaps = 48/346 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
           A++ GG SSE E+S+ S    +  ++++ +++  I + ++   +                
Sbjct: 5   AIVFGGQSSEHEISVISATNISKQVDESKYELILIGITKTGKWLKVDSIASMEDGSWINS 64

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +  D+ F VLHG FGEDG +Q +LEL  IPY   G
Sbjct: 65  KINAYILPDAIKKCIIVEIDGEYKEVHVDVVFPVLHGLFGEDGTIQGLLELSGIPYVGCG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLK 134
           +LASA+ MDK+ +K VV   G+       V  +             +     P  +KP  
Sbjct: 125 VLASAVGMDKLYTKLVVDKLGIRQADYEPVIDYEVREDFKRVVKRIEDRFDYPVFVKPSN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G+      + +   +L++ + +    +        +E          +      +
Sbjct: 185 AGSSKGVSKASNREELEKGILEALNHDRKVLVEETIVGHEVECGVLGRPGEVMASGVGEI 244

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             +  +        L+S  +L +++P  + +++   A     A+   G+SR DF      
Sbjct: 245 KSAATFYDYDAKYKLDSLTLLDSQLPNGVREKLPECAKKIFTALDGFGLSRVDFF-AKED 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            ++ + EIN  PG T +S++P +   AG   +EL+  ++E A   R
Sbjct: 304 GEIVFNEINTMPGFTAISMYPMLFEAAGIGKKELVDRLIELAFERR 349


>gi|317057058|ref|YP_004105525.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
 gi|315449327|gb|ADU22891.1| D-alanine/D-alanine ligase [Ruminococcus albus 7]
          Length = 361

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 87/350 (24%), Positives = 157/350 (44%), Gaps = 57/350 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLVL------------ 46
           +AV+ GG S+E +VS+ S      ++ +    ++V  I + +    V             
Sbjct: 6   VAVIFGGRSNEHDVSVVSAAHVIRSISENPDRYEVICIGITKKGHWVRFMGSAEDIANGS 65

Query: 47  ------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                          ++K D  F VLHG  GEDG +Q I ++ E
Sbjct: 66  WAENPDNVACIFSPDPVHRGFIQLEDDGSYTNIKVDAVFPVLHGKNGEDGTIQGIFQMAE 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--------FTMDSQHLISPPY 128
           IP+    +++SA  MDK  +  ++ + GV     I +               +  +  P 
Sbjct: 126 IPFVGCDLISSACCMDKDVTHTILEAHGVRTAKWISMIYRDISKLDEKCRLMEKELGYPM 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI      + +   +  +    H  ++++EQ ++GIEL C VMG+    
Sbjct: 186 YVKPANCGSSVGITKAHDFEELKAGIKLAF--THDHKVVVEQGINGIELECAVMGNDEPF 243

Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                     ++FY Y+ KY++ +S   +PA++P ++ +E++  A  A +A+GC G++R 
Sbjct: 244 ASTVGEIAAANEFYDYDAKYNNSDSKTYIPARVPDEVIEEIRETAVRAFKAMGCEGLARC 303

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       +V   EIN  PG T +S++P++  + G S+ E    +++ A
Sbjct: 304 DFFLSDK-GEVILNEINTLPGHTQISMYPKLMEHEGISYAEQEDRLIKLA 352


>gi|228477325|ref|ZP_04061963.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
 gi|228251344|gb|EEK10515.1| D-alanine--D-alanine ligase [Streptococcus salivarius SK126]
          Length = 348

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/327 (24%), Positives = 141/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++ + F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYSAFEVKTYFITQSGDFIKTQEFTETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVVASQAIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K ++   GVP     +                 ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKHILEVAGVPQVAYTVFIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 EAELRAAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA +P+++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPAHVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+  L+  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSNLIKELV 333


>gi|86358076|ref|YP_469968.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
 gi|86282178|gb|ABC91241.1| D-alanine-D-alanine ligase protein [Rhizobium etli CFN 42]
          Length = 358

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 145/341 (42%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E +VS+ S     +ALE   +    + V      +L+             
Sbjct: 10  IAVLFGGRSAEHDVSILSATNVMAALEPEKYDALPVFVTHEGQWLLSSFEDGRLATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D+ F VLHG  GEDG VQ   ++  +P    G
Sbjct: 70  TEICLVPGGRGRMLAMSAHGAPHELPRIDILFPVLHGPHGEDGSVQGSAQVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++     S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSATALDKDIAKRLLRAAGLPVARAVTIHEGAAPSLSALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  +   Q     L Q+    H   LL E++V G E+   V+         +       
Sbjct: 190 GVAKVHASQEFAAALEQAF--RHDRILLAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA +P +I   ++ +A  A +A+GC G++R DF    
Sbjct: 248 AESHGFYNYSAKYIDENGAALKVPADLPAEIEAAMRDMAARAFRAVGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +    E+N  PG T +S++ +  A +G S+ E++  +V
Sbjct: 307 SDMRFVINELNTIPGFTDISMYSKAMAASGVSYAEIIDRLV 347


>gi|94270595|ref|ZP_01291776.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
 gi|93450744|gb|EAT01808.1| D-alanine--D-alanine ligase [delta proteobacterium MLMS-1]
          Length = 314

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 101/294 (34%), Positives = 157/294 (53%), Gaps = 13/294 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH 59
           +A+L GG S+EREVSLS       AL  + +++ + D    +  + A     D+AF +LH
Sbjct: 9   VALLAGGKSAEREVSLSGAAGVEKALAGSRYRLRRYDPATDLPRLAADAASIDVAFVLLH 68

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG +Q  L+LL IPY  SG+L SAL+MDK  +K++    G+ V    +     + 
Sbjct: 69  GTLGEDGTIQGFLDLLGIPYQGSGVLGSALAMDKDLAKELYRLAGLRVPAWEMARPADIA 128

Query: 120 SQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                  L+SPP V+KP++ GSSLG+ ++  ++ +   L  +    H DQ+++EQ+V G 
Sbjct: 129 EPRRLLALLSPPLVVKPVRQGSSLGMSIVDAEEELAPALETAF--AHDDQVMVEQFVAGR 186

Query: 176 ELT--CGVMGDASLDVTEIAVP--KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           E+T         +       +P  +  F+ Y+ KY    S  V PA++P  +  +VQ  A
Sbjct: 187 EVTGGVLGNDQLTALPVVEIIPGEQYRFFDYQAKYQPGASREVCPAELPPAVTAQVQEWA 246

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             AH+ +  +G SR+D +       ++ LE N  PGMTP S+FP+ AA  G  F
Sbjct: 247 CRAHRVLRLKGYSRTDMILAADG--LYVLETNTIPGMTPTSLFPQAAAAHGLDF 298


>gi|295104375|emb|CBL01919.1| D-alanine--D-alanine ligase [Faecalibacterium prausnitzii SL3/3]
          Length = 364

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 157/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG+SSE EVS  S       ++ + ++V  + + +    +               
Sbjct: 9   VALLFGGMSSEHEVSCVSVGNFVRNIDRSKYEVLTVGITKEGRWLYTEATAEQMADGSWE 68

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  I 
Sbjct: 69  ELPGNMACVISPDRADHGMILFTPDGRVEKMHLDVVIPVLHGLWGEDGTVQGLLELAGIA 128

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129
           Y   G+LAS++ MDK  +  +  + GVP    +  NR+             +  +  P  
Sbjct: 129 YVGCGVLASSVCMDKAVANALFEANGVPHTKWVAANRWEIEKDLEGVCAGVEQKLGWPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +   + +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 189 VKPANAGSSVGISKVSSQEELKAAIALAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 246

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 247 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAMAYTALNCEGLARCD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A
Sbjct: 307 FFVEKNTGRVLINEINTFPGFTAISMYPKLMEHEGLPVPQLIDRLIALA 355


>gi|288800658|ref|ZP_06406115.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
 gi|288332119|gb|EFC70600.1| D-alanine--D-alanine ligase [Prevotella sp. oral taxon 299 str.
           F0039]
          Length = 332

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 138/325 (42%), Gaps = 33/325 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE EVSL S +   S  +   + V  +++ +    V               
Sbjct: 7   IAIVCGGYSSEHEVSLRSAQGIYSFFDKERYNVYIVEISKESWWVNVEENQQLPIDKNNF 66

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+GL+Q   +++++PY+ SG+L  A++ +K      +
Sbjct: 67  SFELNGNKVVFDYAYITIHGTPGENGLLQGYFDMIQLPYSTSGVLVEAMTFNKFVLNNYL 126

Query: 101 SSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              G  V  S++V +           +  +  P  IKP   GSS G+  +K    IP  L
Sbjct: 127 RGFGYNVAKSMVVYKDEAHKISAEKIESELGMPCFIKPAADGSSFGVSKVKSKSDIPAAL 186

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNST 212
               ++N  ++++IE ++ G E++ G        V+  A        +       +    
Sbjct: 187 --ELAFNESNEVMIESFLQGTEISIGCYATKEGLVSLPATEVVTENEFFDYNAKYNGQVQ 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  D  + V       +  + C GI R D++    S     +  LEIN  PGMT
Sbjct: 245 EITPARLHPDTAERVANEVKEIYSLLRCNGIIRIDYIISKDSNGKDVLNLLEINTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVE 294
             S  P+    AG +  ++L  +VE
Sbjct: 305 ATSFIPQQVRAAGLNMTDVLTNIVE 329


>gi|222151984|ref|YP_002561144.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
 gi|254767732|sp|B9E8D0|DDL_MACCJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222121113|dbj|BAH18448.1| D-alanine-D-alanine ligase [Macrococcus caseolyticus JCSC5402]
          Length = 356

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 149/337 (44%), Gaps = 42/337 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG S+E +VSL + ++  +A++   + +  I +      +               
Sbjct: 6   ICIIYGGKSAEHDVSLLTAQSVINAMDKDKYAIDTIYITNDGEWLKGPEISETIEDSERL 65

Query: 46  -LAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            L+H++                 D  F +LHG  GEDG +Q + E+L+IPY  +G+LA++
Sbjct: 66  RLSHIERLSISEMLNVSSAGKAYDAVFPLLHGPNGEDGTIQGLFEVLDIPYVGNGVLAAS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSL 139
            SMDK+  KQ+ ++ G+P  P +   +   +          +  ++ P  +KP   GSS+
Sbjct: 126 TSMDKLVMKQLFATRGLPQLPYVSFLKSEYEAHKDNIISLVEGKLTYPVFVKPANLGSSV 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           GI      +++   + ++  ++    +        +E+           +    V   DF
Sbjct: 186 GISKCTDSETLIHGIEEALQFDRKLVIEQGVNAREVEVAVLGNDTPETTLPGEVVKDVDF 245

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y Y+ KY        +PA I  +I   ++ +A  A +A  C G+ R+DF       K++ 
Sbjct: 246 YDYKSKYKDGKVRLQIPADISEEIQSALRDMAVEAFKATDCSGLVRADFFLTE-DDKIYI 304

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            E N  PG T  S++P +    G S+ EL+  ++  A
Sbjct: 305 NETNAMPGFTKFSMYPLLWENMGKSYSELITDLINLA 341


>gi|118617561|ref|YP_905893.1| D-alanyl-alanine synthetase A [Mycobacterium ulcerans Agy99]
 gi|166198494|sp|A0PQ03|DDL_MYCUA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118569671|gb|ABL04422.1| d-alanine--D-alanine ligase DdlA [Mycobacterium ulcerans Agy99]
          Length = 373

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 97/357 (27%), Positives = 156/357 (43%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  +S  S  +    L+   F+V  I +      VL    PD        
Sbjct: 13  VAVVFGGRSNEHAISCVSAGSILRNLDPRRFEVIAIGITPQGSWVLTDGNPDALAITDRR 72

Query: 53  ---------------------------------------LAFNVLHGNFGEDGLVQAILE 73
                                                  + F VLHG +GEDG +Q +LE
Sbjct: 73  LPEVSSQSGTELALPADPRWGGQLVSLPPGAGEVLASVDVVFPVLHGPYGEDGTIQGLLE 132

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYV 129
           L  +PY  +G+LASA  MDK  +K++ S+ G+P+ P  ++              +  P  
Sbjct: 133 LAGVPYVGAGVLASAAGMDKEFTKKLWSAAGLPIGPHAVLRPSRQSLDREELQRLGLPAY 192

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--- 186
           +KP +GGSS+G+  +     +P  +  +    H  ++++E  ++G EL CGV+       
Sbjct: 193 VKPARGGSSIGVSRVSSFDELPAAIAAAR--RHDPKVIVEAAINGRELECGVLEFPDGRL 250

Query: 187 -------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  + V  +   +  FY +E KY    +   +PAK+  D+   V++LA  A +AI 
Sbjct: 251 EASTLGEIRVAGVRGREDGFYDFETKYLDDAAELDVPAKVEDDVADAVRQLAIRAFEAID 310

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C+G++R DF            E+N  PG T +S++P M   +G  +  LL  MVE A
Sbjct: 311 CQGLARVDFFLT--DDGPVINELNTMPGFTTISMYPRMWVASGVDYPTLLATMVETA 365


>gi|332672285|ref|YP_004455293.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332341323|gb|AEE47906.1| D-alanine--D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 315

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 95/305 (31%), Positives = 158/305 (51%), Gaps = 15/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  A AL   G +VS  DVD  +   L  L+PDL + +LHG
Sbjct: 9   VAVLAGGLSHERDVSLRSGRRVAEALRSVGVEVSVHDVDADLVPALTDLRPDLVWPLLHG 68

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V+ +++LL +    +G  AS ++  K  +K VV+  G+     + + +     
Sbjct: 69  ATGEDGSVRDVVQLLGLRLLGTGPRASRVAWSKPIAKTVVARAGLATPEFVTLPQSLFRE 128

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS+LG+ ++     +P  +     + + D  LIE+
Sbjct: 129 LGAGRVLDAVVARLGLPLVVKPSRGGSALGVTLVTDADDLPRAM--VDCFAYSDTALIER 186

Query: 171 YVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            V G E+   V+   D  + +  + +     Y Y+ +Y+     +  PA++   + + V 
Sbjct: 187 AVVGTEVAVSVVDTGDGPVPLPAVEIVTDGPYDYDARYNPGRVEYFTPARLDAVMARRVG 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AH A+G   +SR+D + D      ++LE+NV PGMT  S+FP+ A  AG++  +L
Sbjct: 247 EVAVAAHTALGLARLSRTDLVVDAE-GTPWFLEVNVAPGMTETSLFPQAAEGAGHNLGDL 305

Query: 289 LLWMV 293
              +V
Sbjct: 306 YRSLV 310


>gi|306840264|ref|ZP_07473038.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
 gi|306289791|gb|EFM60973.1| D-alanine--D-alanine ligase [Brucella sp. BO2]
          Length = 366

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 ILGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|325977796|ref|YP_004287512.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|325177724|emb|CBZ47768.1| D-alanyl-alanine synthetase A [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 347

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/331 (26%), Positives = 147/331 (44%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            +L GG S+ER+VS+ S ++   A+    F V    + +S   +                
Sbjct: 7   VLLYGGRSAERKVSVLSAESVMRAINYDKFFVKTYFITQSGDFIKTQEFSSKPADDEKLM 66

Query: 47  --------AHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNATVVESQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K V+ S GVP+   +         +   +    ++ P  +KP   GSS+GI    
Sbjct: 127 DKISTKHVLESAGVPLVAYVTYVEGADLEKAVAEVNEKLTYPVFVKPANMGSSVGISKAD 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            ++ +   +  +  ++    +        IE+      D    +    V    FY Y+ K
Sbjct: 187 DEEGLRSAIDLALKYDSRILIETGVNAREIEVGILGNADVQTTLPGEVVKDVAFYDYDAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA I   I +E++  A  A +AIG  G+SR DF        V+  E+N  
Sbjct: 247 YIDNKITMDIPAHIDSSIMEEMRGYATTAFRAIGGCGLSRCDFFLTE-DGHVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +VE A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYSDLIEKLVELA 336


>gi|16799922|ref|NP_470190.1| D-alanyl-alanine synthetase A [Listeria innocua Clip11262]
 gi|22095561|sp|Q92DG5|DDL_LISIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16413299|emb|CAC96080.1| D-alanine--D-alanine ligase [Listeria innocua Clip11262]
          Length = 370

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVTEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI        +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKTELIEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|222153385|ref|YP_002562562.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
 gi|254767741|sp|B9DUS0|DDL_STRU0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222114198|emb|CAR42743.1| D-alanine--D-alanine ligase [Streptococcus uberis 0140J]
          Length = 348

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 88/334 (26%), Positives = 151/334 (45%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + +L GG S+EREVS+ S ++   A+    F V    +                      
Sbjct: 6   IVLLYGGRSAEREVSVLSAESVMRAINYDKFHVKTYFISQAGDFYKTQEFTVQPSESEKL 65

Query: 39  ------DRSVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                 D S+ +  + +  D  + F +LHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNASLDASLKIKASDIYEDKAVVFPLLHGPMGEDGSIQGFLEILKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+P     +          +      +S P  +KP   GSS+GI   
Sbjct: 126 MDKITTKRVLESAGIPQVNYTVYIEGNDLEDCITETLETLSFPIFVKPANMGSSVGISKA 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSY 202
           +  + +   +  +    +  ++LIEQ V   E+  G       +  +    +    FY Y
Sbjct: 186 ESIEGLREAIALAL--KYDSRILIEQGVVAREIEVGLLGNTKVASTLPGEVIKDVAFYDY 243

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     +  +PA I   I  +++  A  A +AIG  G+SR DF        ++  E+
Sbjct: 244 QAKYIDNKISMAIPATIDEGITSQMRYFAEQAFKAIGACGLSRCDFFL-AEDGNLYLNEL 302

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 303 NTMPGFTQWSMYPLLWDNMGLSYSDLIEELVSLA 336


>gi|323691440|ref|ZP_08105712.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
 gi|323504486|gb|EGB20276.1| D-alanine-D-alanine ligase [Clostridium symbiosum WAL-14673]
          Length = 355

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 91/346 (26%), Positives = 148/346 (42%), Gaps = 56/346 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           V+ GG SSE  VS  S     + ++   + V  + +      +L                
Sbjct: 8   VIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRDGT 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +K D AF VLHG +GEDG +Q + EL ++PY   G+
Sbjct: 68  VQAVLSPDATEKSVIVIDGAGIKKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKPL 133
           LASA+SMDK  +K +    GV       V +  +             +   + P  IKP 
Sbjct: 128 LASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPS 187

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-- 191
             GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G+    V    
Sbjct: 188 NAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASG 245

Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +  + FY +E KY +  S  V+  ++P D  + V+R A    +A+   G++R DF 
Sbjct: 246 VGEVLAAAQFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                  V + EIN  PG T +S++P +   AG S  EL+  ++E 
Sbjct: 306 VT-KDGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLIEH 350


>gi|332884259|gb|EGK04527.1| D-alanine-D-alanine ligase [Dysgonomonas mossii DSM 22836]
          Length = 326

 Score =  153 bits (387), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 30/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF------------------KVSQIDVDRSV 42
           +A++ GG SSE  VS  S     S L+   +                  +   +D +   
Sbjct: 5   IAIVWGGYSSEVIVSAKSMAGVYSFLDKEKYNLYKVKIVKEGWTVEIDGETHPVDKNDFT 64

Query: 43  GLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L   K   D AF ++HG  GEDG +QA  ++L+IPY+  G++ S+L+M+K      +
Sbjct: 65  FHTLEKEKIKIDFAFIIIHGTPGEDGHLQAYFDMLDIPYSTCGMMPSSLTMNKFVCNNFL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+ V  S+ +N+ +    + I+     P  +KP  GGSS     +K    +   +  
Sbjct: 125 RNFGIRVADSLYLNKDSKYEINNITEKLGLPMFVKPNTGGSSFATTKVKSVDQLQKAIDV 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +        ++IE ++ G E+TCG     + +V            +             +
Sbjct: 185 AFGETPD--VIIESFIKGTEVTCGCYKIKNKEVVFPLTEVVTSNDFFDYDAKYEGQVEEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  +I +E+QRL    +  +G +GI R DF+      K + LE+N  PGMT  S  
Sbjct: 243 TPARISQEITEEIQRLTRKIYDLVGAKGIIRVDFII--SDNKPYLLEVNTVPGMTQTSFI 300

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+  A AG +  E+L  ++E+
Sbjct: 301 PQQVAAAGLNITEVLTEIIEN 321


>gi|145295462|ref|YP_001138283.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum R]
 gi|166198482|sp|A4QDT4|DDL_CORGB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|140845382|dbj|BAF54381.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 360

 Score =  153 bits (387), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 152/349 (43%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS  S  A  + L+   + V  + +      V+    P         
Sbjct: 11  VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG VQ +  L +IP
Sbjct: 71  MPEVEHREEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKG 135
               G+LASA  MDK  +K+++++ G+P+   +        T   ++L+  P  +KP +G
Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPIGREVILRDRTELTEAEKNLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +   +     +  +    H +++++E  + G E+ CGV+      +      
Sbjct: 191 GSSIGISRVTAWEDFNKAVGLAR--AHDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA +     + +Q LA  + QA+ C G++R D
Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M   +G ++ ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355


>gi|182414453|ref|YP_001819519.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
 gi|177841667|gb|ACB75919.1| D-alanine--D-alanine ligase [Opitutus terrae PB90-1]
          Length = 311

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 95/300 (31%), Positives = 148/300 (49%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV  GG SSEREVSL SG+ACA+ALE + F+V +  +D          +  + F+ LHG
Sbjct: 6   IAVFSGGTSSEREVSLGSGQACAAALEKS-FRVERFQIDADALPAGLDPQRHVVFSTLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN----RF 116
            FGEDG +Q +L+   + Y     ++SAL+MDK  +K+  ++ G+ V P +         
Sbjct: 65  TFGEDGGMQRLLDAAGMHYAGCDAVSSALTMDKTLTKETAAAKGIKVIPGVTFPAAKKPR 124

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                       V+KP   GSS+G+ ++   + +   L          + +IE+ + G E
Sbjct: 125 PEQVIEQFGERVVVKPNAEGSSVGLNLVGSREELTRVLDVIQ----NGRWIIERRIFGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L  GV+   ++       PKS  Y Y  KY+   + ++ PA +   + +++Q  A  A  
Sbjct: 181 LAVGVLNGRAM-GVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFA 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A GCR  +R DF+      +++ LEIN  PGM   S+ P  A   G  F  L+  MV  A
Sbjct: 240 ACGCRDYARVDFIL-GDDHELYLLEINTLPGMKETSLLPMSARCEGIDFTALVKAMVTPA 298


>gi|109240375|dbj|BAE96111.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 82/341 (24%), Positives = 146/341 (42%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V   L    P+     
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  IKP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 188 MGSSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIV 247

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF      
Sbjct: 248 KEEAFYDYNAKYIDNTIQMAIPANIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLT-NK 306

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 347


>gi|77412467|ref|ZP_00788770.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
 gi|77161485|gb|EAO72493.1| D-alanine--D-alanine ligase [Streptococcus agalactiae CJB111]
          Length = 348

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 95/333 (28%), Positives = 153/333 (45%), Gaps = 43/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+    F V    +   VG  +   + D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 67  TNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +KQV+++ GVP                   S   +S P  +KP   GSS+GI    
Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
            + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+
Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY        +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N
Sbjct: 245 AKYIDNKIIMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|319744789|gb|EFV97129.1| D-alanine-D-alanine ligase [Streptococcus agalactiae ATCC 13813]
          Length = 348

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+    F V    +   VG  +   + D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 67  TNQTVDLDKMVRPSDIYDDDAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +KQV+++ GVP                   S   +S P  +KP   GSS+GI    
Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDNLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
            + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+
Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N
Sbjct: 245 AKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|22536931|ref|NP_687782.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae 2603V/R]
 gi|25010842|ref|NP_735237.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae NEM316]
 gi|76787870|ref|YP_329514.1| D-alanyl-alanine synthetase A [Streptococcus agalactiae A909]
 gi|76798442|ref|ZP_00780681.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77406739|ref|ZP_00783776.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
 gi|77409084|ref|ZP_00785800.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77414685|ref|ZP_00790819.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|39930893|sp|Q8E0G6|DDL_STRA5 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|39930895|sp|Q8E640|DDL_STRA3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123602002|sp|Q3K1T9|DDL_STRA1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|22533783|gb|AAM99654.1|AE014226_14 D-alanine--D-alanine ligase [Streptococcus agalactiae 2603V/R]
 gi|23095221|emb|CAD46431.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562927|gb|ABA45511.1| D-alanine--D-alanine ligase [Streptococcus agalactiae A909]
 gi|76586204|gb|EAO62723.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Streptococcus
           agalactiae 18RS21]
 gi|77159263|gb|EAO70440.1| D-alanine--D-alanine ligase [Streptococcus agalactiae 515]
 gi|77172301|gb|EAO75454.1| D-alanine--D-alanine ligase [Streptococcus agalactiae COH1]
 gi|77174644|gb|EAO77476.1| D-alanine--D-alanine ligase [Streptococcus agalactiae H36B]
          Length = 348

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 96/333 (28%), Positives = 154/333 (46%), Gaps = 43/333 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG S+EREVS+ S ++   A+    F V    +   VG  +   + D          
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFIT-QVGQFIKTQEFDEMPSSDEKLM 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 67  TNQTVDLDKMVRPSDIYDDNAIVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +KQV+++ GVP                   S   +S P  +KP   GSS+GI    
Sbjct: 127 DKITTKQVLATVGVPQVAYQTYFEGDDLEHAIKLSLETLSFPIFVKPANMGSSVGISKAT 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
            + S+   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+
Sbjct: 187 DESSLRSAIDLAL--KYDSRILIEQGVTAREIEVGILGNNDVKTTFPGEVVKDVDFYDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAK+     + +++ A  A +AIG  G+SR DF       ++F  E+N
Sbjct: 245 AKYIDNKITMDIPAKVDEATMEAMRQYASKAFKAIGACGLSRCDFFLT-KDGQIFLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLTYSDLIEKLVMLA 336


>gi|331090915|ref|ZP_08339758.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
 gi|330405469|gb|EGG85002.1| hypothetical protein HMPREF9477_00401 [Lachnospiraceae bacterium
           2_1_46FAA]
          Length = 338

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 81/335 (24%), Positives = 153/335 (45%), Gaps = 47/335 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S+E EVSL S  A  + L+   +++  I + R                    
Sbjct: 4   IAVIFGGCSTEYEVSLQSAYAVLTHLDREKYEIISIGITREGKWFRYYGKEKYISEDTWQ 63

Query: 46  -------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                       +K D  F VLHG  GEDG +Q ++EL  +P  
Sbjct: 64  EKECNPAWILPDRVEQGILECTKEGNRLIKVDAVFPVLHGKNGEDGTIQGLIELAGLPVI 123

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
             G L+S+L MDK ++ ++V   G+ V  ++++ +        +  P  +KP++ GSS G
Sbjct: 124 GCGTLSSSLCMDKDKAHRLVEKEGIAVPKAVVLRKGEK--ADTLVYPVFVKPVRAGSSFG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSD 198
           I  + +++ +   +  +    H D+++IE+ ++G E+ C V       +   +       
Sbjct: 182 ITKVDREEDLEKAVELAF--VHDDEVIIEENIEGFEVGCAVLGNDKLIVGRVDEIELSDG 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ ++ KY+  NS   +PA+I  +I ++++  A   ++ + C+G +R D    P  +++ 
Sbjct: 240 FFDFKEKYTLQNSKIHMPARIDGEIEEKIKETAKKIYRTLSCKGFARVDMFLTP-DKRIV 298

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + E+N  PG T  S +P M       F ++L  ++
Sbjct: 299 FNEVNTIPGFTSHSRYPNMMKGIDMLFEDVLDNLI 333


>gi|19552539|ref|NP_600541.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|62390203|ref|YP_225605.1| D-alanyl-alanine synthetase A [Corynebacterium glutamicum ATCC
           13032]
 gi|25452911|sp|Q8NQV2|DDL_CORGL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|21324089|dbj|BAB98714.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325539|emb|CAF20019.1| D-ALANINE--D-ALANINE LIGASE A [Corynebacterium glutamicum ATCC
           13032]
          Length = 360

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 94/349 (26%), Positives = 152/349 (43%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  VS  S  A  + L+   + V  + +      V+    P         
Sbjct: 11  VAVVYGGRSSEHSVSCVSAGAIMAHLDPEKYDVIPVGITVDGAWVVGETDPQKLTLIDRT 70

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG FGEDG VQ +  L +IP
Sbjct: 71  MPEVEHHEEVRPSLDPAHRGEFHFSDGSLYATADVIFPVLHGRFGEDGTVQGLFALSDIP 130

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKG 135
               G+LASA  MDK  +K+++++ G+PV   +        T   ++L+  P  +KP +G
Sbjct: 131 VVGPGVLASAAGMDKEYTKKLMAAEGLPVGREVILRDRTELTEAEKNLLGLPVFVKPARG 190

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  +   +     +  +    H +++++E  + G E+ CGV+      +      
Sbjct: 191 GSSIGISRVTAWEDFNKAVGLAR--AHDEKVIVESEIVGSEVECGVLQYPDGRIVASVPA 248

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY     T  +PA +     + +Q LA  + QA+ C G++R D
Sbjct: 249 LLSGTESGAGGFYDFDTKYLDNVVTAEIPAPLDEKTTELIQSLAVESFQALACEGLARVD 308

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            EIN  PG TP+S++P+M   +G ++ ELL  +V+ A
Sbjct: 309 FFVTA--NGPVLNEINTMPGFTPISMYPQMFTASGVAYEELLDVLVQQA 355


>gi|163755784|ref|ZP_02162902.1| D-alanylalanine synthetase [Kordia algicida OT-1]
 gi|161324305|gb|EDP95636.1| D-alanylalanine synthetase [Kordia algicida OT-1]
          Length = 318

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 140/322 (43%), Gaps = 30/322 (9%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRSVGL 44
           MGG SSE  +SL +G    + L    +   ++ +                    D SV +
Sbjct: 1   MGGYSSEFAISLKTGTVVYNHLNPEKYNTYKVHIFRDKWVCVTTVGKEFPIDKNDFSVTI 60

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
               +  D  FN +HG+ GEDG +Q  LELLEIP+T  G+  +AL+ +K      +   G
Sbjct: 61  DDIKITFDCVFNAIHGSPGEDGFMQGYLELLEIPHTSCGMYQAALTFNKRDLLATLKPYG 120

Query: 105 VPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           +    S  +N      +  I      P  +K  K GSS G+  + +   +   +  +   
Sbjct: 121 IKCATSYYLNAGDSIDEAAIVAKVGLPCFVKANKAGSSFGVSKVHEISDLKNAIAIAL-- 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVLPAK 218
              D+++IE ++DG+E++ GV+                   +    +     S  + PA+
Sbjct: 179 KEDDEVIIESFLDGVEVSVGVINYKGNVTVLPITEIVSENDFFDYEAKYLGKSQEITPAR 238

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  ++  +V ++A   ++ +   G SRS+F+F     + + LE+N  PGMT  SI P+ A
Sbjct: 239 ISPELSAKVAKVAKKIYEILKLEGFSRSEFIF--KDDEPYLLEVNTIPGMTEESILPQQA 296

Query: 279 AYAGYSFRELLLWMVEDASCLR 300
             AG S   L    VE A   +
Sbjct: 297 KEAGISLEALFGNAVELALTKK 318


>gi|72162041|ref|YP_289698.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
 gi|71915773|gb|AAZ55675.1| D-alanine--D-alanine ligase [Thermobifida fusca YX]
          Length = 329

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 89/307 (28%), Positives = 144/307 (46%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL     +V   DV   +  +L    P + F VLHG  
Sbjct: 22  VLAGGLSPEHEVSVRSGRRVAEALRRLDVEVQTCDVGPELLNLLTDDPPQVVFPVLHGTS 81

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL  +PY  +   A   +  K  +K +V+  G+ V   + + +       
Sbjct: 82  GEDGAIREVLELAGVPYVGARPDACRATYAKPIAKTLVAEQGIAVPRGLALPKSLFHDLG 141

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                     ++  P  +KP +GGS+ G   + +  ++P  L   S + + D  LIEQ V
Sbjct: 142 AHAVLERIVAMLGLPLFVKPAQGGSAFGATAVTEASALPAAL--VSCFAYSDTALIEQQV 199

Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+      +            VP    Y Y  +Y++  +    PA++  ++ +    
Sbjct: 200 TGVEVAVGVLDLGDGPVALPAVEIVPDGGVYDYAARYTAGRTEFFSPARLSDEVARAAAD 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+A+G R +SR+D + D  + +V++LE+NV PGMT  S  P     AG  F  + 
Sbjct: 260 AAVTAHRALGLRDVSRTDLIIDE-TGRVYFLEVNVSPGMTDTSTLPLAVEAAGMDFAVVC 318

Query: 290 LWMVEDA 296
             +   A
Sbjct: 319 RELAHRA 325


>gi|85058877|ref|YP_454579.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
 gi|123519734|sp|Q2NUK1|DDL_SODGM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|84779397|dbj|BAE74174.1| D-alanine-D-alanine ligase A [Sodalis glossinidius str.
           'morsitans']
          Length = 366

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/350 (26%), Positives = 152/350 (43%), Gaps = 55/350 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S+E EVSL S      A++   + ++ I VD+     L   +          
Sbjct: 11  VAVLFGGQSTEHEVSLRSSMNVIRAIDRQKYDLTLIGVDKHGRWTLCDEQDYLLNADNPA 70

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+AF+VLHG  GEDG VQ +L +L I
Sbjct: 71  AIRLAPARCYLAVVPGQSGAQLIDAANGQPFPSIDVAFSVLHGASGEDGSVQGLLRVLNI 130

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           PY    +L SA+ MDK  +K+V+   GVPV PS+                  +  P  IK
Sbjct: 131 PYAGPDVLGSAVCMDKDMTKRVLRDAGVPVTPSVTLLRTGDAAPDVDAIIGQLGLPLFIK 190

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P   GSS+G  V K           + ++ +  ++L+EQ + G E+   V+G+ S +V+ 
Sbjct: 191 PASQGSSVG--VSKVTDRAGFAAALALAFRYDAKVLVEQGISGREIETAVLGNDSPEVSV 248

Query: 192 IAVPKSDFYSYELKYSSLNSTH---VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                ++   Y      L       V+PA +P  I   ++++A  A+ A+GC  ++R DF
Sbjct: 249 CGEILANDEFYAYDTKYLKGAQAGLVIPAALPAPIADALRQMAREAYLALGCSVMARVDF 308

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
                  ++   E+N  PG T +S++P++   +G  +  L+  ++  A  
Sbjct: 309 FLTDQ-GQILLNEVNTLPGFTSISMYPKLWEASGLDYPALVDRLIVLARA 357


>gi|313890784|ref|ZP_07824409.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313120885|gb|EFR43999.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 348

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 93/333 (27%), Positives = 158/333 (47%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KP------- 51
            +L GG S+EREVS+ S ++   A+    F V    + ++           KP       
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAINYDRFLVKTYFISQAGDFYKTQEWSQKPAETEKLM 66

Query: 52  --------------D------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                         D      + F +LHG  GEDG +Q  LE+L++PY  + IL S+++M
Sbjct: 67  TNQTIVAASQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYIGTSILGSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S GVP     +        + L      +S P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESAGVPQVAYKVFVEGNSLEECLKEALTNLSFPIFVKPANMGSSVGISKAE 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
            +  +   +  +    +  ++LIEQ V+  E+  G++G+  +  T     V +  FY Y+
Sbjct: 187 SESELREAIQLAL--QYDSRILIEQGVNAREIEVGLLGNTDVTSTLPGEVVKEVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY   N T  +PA++  ++  +++  A  A +A+GC G+SR DF        ++  E+N
Sbjct: 245 AKYIDNNITMAIPAELETELANKMRAYAENAFKALGCCGLSRCDFFLT-RDGSIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYSDLIEKLVALA 336


>gi|291302804|ref|YP_003514082.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290572024|gb|ADD44989.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 346

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 138/335 (41%), Gaps = 45/335 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG   E  VS+ S +  A  L+   ++V  I + ++   +L              
Sbjct: 6   VGIVFGGACEENPVSVKSAQEVARNLDTDKYEVLYIGITKTGDWLLCDSPDTGWETTKNR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ DL F VLHG  GEDG +Q +LEL  IPY    + 
Sbjct: 66  PAVLSPDRNVHGLLVLENGKYETIRLDLVFPVLHGKLGEDGAIQGLLELSGIPYVGCDVQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            SAL MDK  +  V    G+      +V          +  P V+KP + GSS G+  + 
Sbjct: 126 TSALCMDKSLTYLVAQHAGITTPQYWIVTANKDIEPDRLPYPVVVKPARSGSSFGVNKVT 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSD 198
            ++ +   +  +    +  ++LIE+ + G E+ C ++G+    V                
Sbjct: 186 HEEELQTAIDTAR--QYDSKVLIEEAIVGTEVGCSILGERYGLVAGEVDQINVSQGIFRI 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 +  S NST  +PA I L+    VQ  A   ++A+G +G++R DF        + 
Sbjct: 244 HQENNPESGSENSTITVPADISLESRSLVQETAKTLYRALGGKGLARIDFFL-KEDGTLV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             E+   PGMT  S +P M A AG    +L+  MV
Sbjct: 303 LNEVQTLPGMTSYSRYPRMMAAAGIPMADLIDRMV 337


>gi|170783394|ref|YP_001711728.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169157964|emb|CAQ03174.1| D-alanine--D-alanine ligase B [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 321

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 99/314 (31%), Positives = 155/314 (49%), Gaps = 19/314 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+    AL  AG   S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVVDALRGAGVVASLRDPDATLLDFLRETPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   A+ L+ DK  +K +  + G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARAARLAWDKPTAKAIAGTVGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ +++   ++P  +    ++ +GD  LIEQ +
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVRDADALPRAM--VDAYTYGDVALIEQLI 188

Query: 173 DGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G E+  GV+              VP S  Y YE +Y++  +    PA+I  +       
Sbjct: 189 EGTEVAIGVIDTGAGPEALPATEIVPTSGVYGYEARYNAGLTRFYTPARISPEEAAAAST 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A   H+A+G   +SR D + D    + ++LE+NV PG+T  S+ P+  A AG    +L 
Sbjct: 249 AAVGIHRALGIGQMSRVDIIIDAA-GEPWFLEVNVIPGLTETSLLPQGLAAAGIEVGDLY 307

Query: 290 LWMVE---DASCLR 300
             + E   DAS +R
Sbjct: 308 RRLAEAARDASTIR 321


>gi|325066331|ref|ZP_08125004.1| D-alanine--D-alanine ligase [Actinomyces oris K20]
          Length = 315

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 83/307 (27%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNVLISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   +   + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           Y+ G EL   V+           V       Y  + +Y+   S + +PA++   + ++V+
Sbjct: 186 YIAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  EL
Sbjct: 246 TTAVTVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAKAEG-SLEEL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|17987010|ref|NP_539644.1| D-alanyl-alanine synthetase A [Brucella melitensis bv. 1 str. 16M]
 gi|17982662|gb|AAL51908.1| d-alanine--d-alanine ligase a [Brucella melitensis bv. 1 str. 16M]
          Length = 366

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 201 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 358


>gi|256044912|ref|ZP_05447816.1| D-alanine--D-alanine ligase A [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|260565487|ref|ZP_05835971.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|265991340|ref|ZP_06103897.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
 gi|38257346|sp|Q8YHR9|DDLA_BRUME RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetaseA
 gi|260151555|gb|EEW86649.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. 16M]
 gi|263002124|gb|EEZ14699.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 1 str. Rev.1]
          Length = 353

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYFKVMAVSGVSYPEIINRLV 345


>gi|215412825|ref|ZP_03421537.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
           94_M4241A]
 gi|215428433|ref|ZP_03426352.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T92]
 gi|215431931|ref|ZP_03429850.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis EAS054]
 gi|215447248|ref|ZP_03434000.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T85]
 gi|218754742|ref|ZP_03533538.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis GM 1503]
 gi|219559013|ref|ZP_03538089.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T17]
 gi|253797926|ref|YP_003030927.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
 gi|260202123|ref|ZP_05769614.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis T46]
 gi|253319429|gb|ACT24032.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           1435]
          Length = 358

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 353


>gi|15842537|ref|NP_337574.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CDC1551]
 gi|121638862|ref|YP_979086.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Pasteur
           1173P2]
 gi|148824171|ref|YP_001288925.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis F11]
 gi|224991354|ref|YP_002646043.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|254233065|ref|ZP_04926392.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|254552058|ref|ZP_05142505.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis '98-R604
           INH-RIF-EM']
 gi|260188005|ref|ZP_05765479.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis CPHL_A]
 gi|289444545|ref|ZP_06434289.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289448653|ref|ZP_06438397.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289553229|ref|ZP_06442439.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289571180|ref|ZP_06451407.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289751658|ref|ZP_06511036.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289755097|ref|ZP_06514475.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289759106|ref|ZP_06518484.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|289763161|ref|ZP_06522539.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|294993933|ref|ZP_06799624.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 210]
 gi|297635606|ref|ZP_06953386.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN 4207]
 gi|297732604|ref|ZP_06961722.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN R506]
 gi|298526451|ref|ZP_07013860.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|306789864|ref|ZP_07428186.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|306804763|ref|ZP_07441431.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|306808957|ref|ZP_07445625.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308369920|ref|ZP_07419522.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308371194|ref|ZP_07424146.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308373594|ref|ZP_07432977.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308374744|ref|ZP_07437220.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308378154|ref|ZP_07481716.2| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|313659936|ref|ZP_07816816.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis KZN
           V2475]
 gi|166198491|sp|A1KMX5|DDL_MYCBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13882847|gb|AAK47388.1| D-alanine--D-alanine ligase [Mycobacterium tuberculosis CDC1551]
 gi|121494510|emb|CAL72991.1| Probable D-alanine--D-alanine ligase ddlA [Mycobacterium bovis BCG
           str. Pasteur 1173P2]
 gi|124602124|gb|EAY61134.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis C]
 gi|148722698|gb|ABR07323.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis F11]
 gi|224774469|dbj|BAH27275.1| D-alanyl-alanine synthetase A [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|289417464|gb|EFD14704.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T46]
 gi|289421611|gb|EFD18812.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis CPHL_A]
 gi|289437861|gb|EFD20354.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           605]
 gi|289544934|gb|EFD48582.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T17]
 gi|289692245|gb|EFD59674.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis T92]
 gi|289695684|gb|EFD63113.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis EAS054]
 gi|289710667|gb|EFD74683.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis GM
           1503]
 gi|289714670|gb|EFD78682.1| D-Ala-D-Ala ligase [Mycobacterium tuberculosis T85]
 gi|298496245|gb|EFI31539.1| D-alanine-D-alanine ligase [Mycobacterium tuberculosis 94_M4241A]
 gi|308325969|gb|EFP14820.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu002]
 gi|308329500|gb|EFP18351.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu003]
 gi|308333638|gb|EFP22489.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu004]
 gi|308336995|gb|EFP25846.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu005]
 gi|308340809|gb|EFP29660.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu006]
 gi|308344673|gb|EFP33524.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu007]
 gi|308348623|gb|EFP37474.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu008]
 gi|308353349|gb|EFP42200.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu009]
 gi|323718360|gb|EGB27534.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           CDC1551A]
 gi|326904595|gb|EGE51528.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis W-148]
 gi|328457701|gb|AEB03124.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis KZN
           4207]
          Length = 373

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 65/356 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 368


>gi|55823487|ref|YP_141928.1| D-alanyl-alanine synthetase A [Streptococcus thermophilus CNRZ1066]
 gi|81559066|sp|Q5LYJ2|DDL_STRT1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|55739472|gb|AAV63113.1| D-alanine-D-alanine ligase [Streptococcus thermophilus CNRZ1066]
          Length = 348

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 143/327 (43%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S+EREVS+ S ++   A++   F+V    + +S   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYNAFEVKTYFITQSGDFIKTQEFIETPGDDEKLMT 67

Query: 50  ----------KPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                     KP        + F VLHG  GEDG +Q  LE L++PY  + +L+S+++MD
Sbjct: 68  NDTVEASQAIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLETLKLPYVGTNVLSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+++   GVP     +                 ++ P  +KP   GSS+GI   + 
Sbjct: 128 KIMTKRILEVAGVPQVAYTVYIEGEDLEAAVAETLEKLTFPVFVKPANMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +  ++    +        IE+                V    FY Y+ KY
Sbjct: 188 ESELRSAIDLALKYDSRILIEQGVVAREIEVGILGNTTVKTTDPGEVVKDVAFYDYQAKY 247

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                T  +PA++P+++  +++  A  A +A+G  G++R DF        ++  E+N  P
Sbjct: 248 IDNKITMDIPARVPVEVMTQMRAYAAKAFRALGGCGLARCDFFLTE-DGAIYLNELNTMP 306

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G T  S++P +    G S+ +++  +V
Sbjct: 307 GFTQWSMYPLLWENMGLSYSDIIKELV 333


>gi|315937072|gb|ADU56080.1| hypothetical protein CA878-2 [uncultured organism CA878]
          Length = 345

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 146/342 (42%), Gaps = 45/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG   E  +S+ S +  A  L+   ++   I + +S    L              
Sbjct: 6   IGIIFGGCYEEHPISVKSVREVAKNLDTEKYEPFYIGITKSGAWKLCDGPDEGWENSSRS 65

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D    +LHG  GEDG +Q ++E+  IPY    I +
Sbjct: 66  VVLSPDRSVHGLLVLEQGRYETISLDAVLPILHGKLGEDGAMQGLMEIAGIPYAGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SAL MDK  +  V  S G+      +V          ++ P  +KP + GSS G+  + +
Sbjct: 126 SALCMDKSLTYIVARSAGIATPNFWIVTADDDIDPGQLTYPVFVKPARSGSSFGVSKVSR 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +P  +   ++  +  ++LIE+ V   E+ C V+G+ +   T      +  + +   +
Sbjct: 186 EEELPSAV--KTAREYDSKVLIEEAVVASEIGCAVLGNDADLTTGEVDRVALSHGFFKIH 243

Query: 207 SSLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              N        T ++PA IP +    VQ  A + ++A+GCRG++R D        +V  
Sbjct: 244 QESNPEQGSENSTFIVPADIPDESRARVQETAKVIYRALGCRGLARVDMFL-KEDGQVVL 302

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA-SCLR 300
            E+N  PGMT  S +P M A AG    E++  MV  A +  R
Sbjct: 303 NEVNTLPGMTSYSRYPRMMAAAGMPLGEVIDRMVSLALAAHR 344


>gi|255536312|ref|YP_003096683.1| D-alanyl-alanine synthetase A [Flavobacteriaceae bacterium 3519-10]
 gi|255342508|gb|ACU08621.1| D-alanine--D-alanine ligase [Flavobacteriaceae bacterium 3519-10]
          Length = 339

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 92/327 (28%), Positives = 154/327 (47%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+MGG S E  VSL SG+    +L+   + V ++ V +     L              
Sbjct: 17  VAVVMGGYSDEYVVSLKSGQLIYDSLDRDSYNVYKVIVLKDEWYFLDDREQKVPVNKADF 76

Query: 50  ----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                     K D+ FN++HG  GE+G +QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 77  SVNLDSGFDVKFDVCFNIIHGKPGENGELQAYWDTIGQKYTGCGFYQSALTFNKKDTLAV 136

Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   S+ + +     +      +  P  +KP + GSSLGI  +K        + 
Sbjct: 137 LSKYGIPAAKSVYIRKGEAIDEDGIIEDLKLPLFVKPNQSGSSLGISKVKDKSEFQKAI- 195

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNST 212
              ++   D++LIE ++DG+E++ GV+      +       V   +F+ YE K     S 
Sbjct: 196 -DFAFEQDDEVLIESFLDGMEVSVGVVDFNGESIVLGITEIVSHKEFFDYEAK-YEGASE 253

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  ++V+ +A  A+ ++G  G SRS+F+   +    + LE+N  PG +P S
Sbjct: 254 EITPARIDDETRQKVEEIAKKAYNSLGMSGFSRSEFII--MGGTPYMLEMNTNPGFSPAS 311

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299
           I P+ A   G S ++L    VE A   
Sbjct: 312 ILPQQAKIYGISIKDLCGNEVEKALAK 338


>gi|116333877|ref|YP_795404.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           brevis ATCC 367]
 gi|122269436|sp|Q03QZ9|DDL_LACBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116099224|gb|ABJ64373.1| D-alanine--D-alanine ligase [Lactobacillus brevis ATCC 367]
 gi|238767638|dbj|BAH66654.1| D-alanine:D-alanine ligase [Lactobacillus brevis]
          Length = 380

 Score =  153 bits (386), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 76/343 (22%), Positives = 135/343 (39%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           + +L GG SSE +VS  S      A++   + VS   + R                    
Sbjct: 9   VGLLFGGNSSEHDVSKRSAHNIYDAMDKDRYNVSLFLLTRDGFVLSDAASRRVFDGEDEA 68

Query: 43  ------------------GLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                L+  K  D+ F ++HGN GEDG +Q +  LL+ P+  SG
Sbjct: 69  TVAAEEQAKVDASNPLAPIWNLSQAKDIDVFFPIIHGNLGEDGTIQGLFRLLKKPFVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           +LASA+S DK  +KQV+++ G+     +        +      Q  +     IKP   GS
Sbjct: 129 VLASAVSFDKDMTKQVLTAHGIRNTKYVVLTPDNRADFDYATIQSRLGDNVFIKPANQGS 188

Query: 138 SLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           S+GI      Q                     +   Q V+   L       + L    + 
Sbjct: 189 SVGIHKASNVQEYLDGVADAFRYDYKVLVEQTIDGPQEVEISILGNEQPQASKLGAIRVP 248

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                +        +   T  +P K+  ++ +E+ ++    + A+G +G++R D+L    
Sbjct: 249 ESDVFYDYNNKFVDASGVTFEVPVKLSDELTQEITQMGLQTYAALGLKGMARIDYLVS-K 307

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               +  E+N  PG T +S++P++    G ++ +L+  ++E A
Sbjct: 308 DGVPYVGEVNTLPGFTNISLYPQLWQATGINYADLIDRLIELA 350


>gi|4405962|gb|AAD19835.1| D-alanyl-D-alanine ligase [Amycolatopsis orientalis]
          Length = 348

 Score =  153 bits (385), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 80/337 (23%), Positives = 140/337 (41%), Gaps = 45/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG+S E  +S+ S +     L+   ++   I + +S                   
Sbjct: 6   IGILFGGLSEEHPISIKSAREVQKHLDLEKYEPYYIGITQSGSWMLCDGPAEDWENGDVR 65

Query: 45  --------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                         VL   K      D+   VLHG FGEDG +Q +LE+  IPY    + 
Sbjct: 66  PAVLSPDRGVHGLLVLDEGKYETIALDVVLPVLHGKFGEDGAMQGLLEISGIPYVGCDLP 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S + +DK  +  VV   G+      +V          ++ P  +KP + GSS G+  + 
Sbjct: 126 SSVMCIDKSLTYSVVRGAGIATPTFHIVTPDNDVDPDALNYPVFVKPARSGSSFGVSKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             + +P  L ++    +  ++LIE+ V G E+ C ++GD            +  + +   
Sbjct: 186 SKEELPAALAEAR--QYDAKILIEEAVIGSEIGCSILGDGEDLFAGEVDRVALTHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +   +          ++PA IP      VQ  A + ++A+GC G++R D         V 
Sbjct: 244 HQEKSPETGSENSSFIVPADIPDASRDLVQETAKVIYRALGCSGLARVDLFL-KEDGSVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             E+N  PG+T  S +P M   AG S  +++  +V+ 
Sbjct: 303 LNEVNTLPGLTSYSRYPRMMNAAGLSLGDVIDRLVKL 339


>gi|260063594|ref|YP_003196674.1| D-alanyl-alanine synthetase A [Robiginitalea biformata HTCC2501]
 gi|88783039|gb|EAR14212.1| D-alanylalanine synthetase [Robiginitalea biformata HTCC2501]
          Length = 329

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 90/322 (27%), Positives = 149/322 (46%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG SSE E+SL SG+     L+   +   +I + R   ++L              
Sbjct: 7   IAVIMGGYSSEYEISLKSGEVVCKWLDRDQYDPYRILIRRDKWVMLGDSGREYPVSRHDF 66

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   L+ D  FN +HG  GE+GL+QA  EL+ +P T  G   +A++ +K     ++
Sbjct: 67  SVELEDGTLRFDCVFNAIHGTPGENGLMQAYFELIGMPQTSCGFYQAAVTFNKRDLLGIL 126

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GVP   S  ++R    +Q  I      P  +K  + GSS G+ ++++   +   +  
Sbjct: 127 KSAGVPAARSYHLDRGQELNQQAILDAVGLPCFVKANRAGSSFGVSLVREASGLQAAV-- 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
            ++    D++LIE  + G E++ GV+                   +    +     S  +
Sbjct: 185 ENALKEDDEILIEAALQGTEVSVGVIRYQGATRVLPITEIVSENDFFDYQAKYEGKSREI 244

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP D  ++V+ LA   +  +   G SRS+F+   +  +   LE+N  PG+T  SI 
Sbjct: 245 TPARIPEDTAEKVRELAARIYDRLRMTGYSRSEFIL--VDGEPHLLEVNTTPGLTEASIL 302

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+ AA AG S  EL    + DA
Sbjct: 303 PQQAACAGISLTELFGSAIADA 324


>gi|319440504|ref|ZP_07989660.1| D-alanyl-alanine synthetase A [Corynebacterium variabile DSM 44702]
          Length = 365

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 94/355 (26%), Positives = 153/355 (43%), Gaps = 59/355 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +AVL GG +SE  +S  S  A  S L+   ++V  + +  +   V               
Sbjct: 15  VAVLYGGQNSEHSISCLSAAAVMSHLDPDRYEVVPVGITETGMWVKGTTDTEALSAHGRD 74

Query: 48  -------------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                          + + D+ F VLHG  GEDG VQ +LEL  
Sbjct: 75  LPTVKMSRGVHLVPGSFASGRGQLRYGDGSLYAEVDVIFPVLHGRNGEDGTVQGVLELSN 134

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPL 133
           +PY  +G+LASA  MDK  +K +  + GVPV   +        T + + +I  P  +KP 
Sbjct: 135 VPYVGNGVLASAACMDKQYTKLIARAAGVPVGDEVVLTERRDLTDEEKEMIGLPVFVKPA 194

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           +GGSS+GI  +     +     ++ ++ H  ++L+E  + G+E+ CGV+      V    
Sbjct: 195 RGGSSVGISKVSDWADLDAA--EAHAFEHDTKILVEAMLHGVEVECGVLQYPDGTVHASQ 252

Query: 194 VP--------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                        FY ++ KY     ++ +PA +P      V+R A    +A+ C G++R
Sbjct: 253 PSLLEGTEDGPEGFYGFDTKYLDDIISYEIPAPLPEGQADAVRRWAVETFRALDCEGLAR 312

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF            E N  PG TP+S++P+M    G ++ ELL  ++  A   +
Sbjct: 313 VDFFVTEDG--PVLNEPNTMPGFTPISMYPKMFEATGVAYTELLDILIARALVRK 365


>gi|313609857|gb|EFR85282.1| D-alanine--D-alanine ligase [Listeria monocytogenes FSL F2-208]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|217965050|ref|YP_002350728.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|217334320|gb|ACK40114.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Listeria monocytogenes
           HCC23]
 gi|307570389|emb|CAR83568.1| D-alanine--D-alanine ligase [Listeria monocytogenes L99]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDSIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|47094861|ref|ZP_00232475.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|254898973|ref|ZP_05258897.1| D-alanyl-alanine synthetase A [Listeria monocytogenes J0161]
 gi|254911539|ref|ZP_05261551.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
 gi|254935865|ref|ZP_05267562.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|47016743|gb|EAL07662.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 1/2a
           F6854]
 gi|258608453|gb|EEW21061.1| D-alanine-D-alanine ligase [Listeria monocytogenes F6900]
 gi|293589485|gb|EFF97819.1| D-alanine-D-alanine ligase [Listeria monocytogenes J2818]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|326202145|ref|ZP_08192015.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
 gi|325987940|gb|EGD48766.1| D-alanine/D-alanine ligase [Clostridium papyrosolvens DSM 2782]
          Length = 349

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 148/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           +A++ GG S E EVSL+S  +    + +  +    I + +    +               
Sbjct: 6   IAIIFGGCSPEYEVSLNSASSVIKHINNDLYNTILIGITKEGEWLRYFGDVDKISNNTWY 65

Query: 48  HLK----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
             K                             D AF VLHG  GEDG VQ +L+L  IP+
Sbjct: 66  QEKGCNPVAFSQSPSIHGFYEFSEESSSITYVDAAFPVLHGRNGEDGTVQGMLKLAGIPF 125

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLK 134
              G+L+SA+ MDK  + ++  S GV V  SI     ++ +  ++    +  P  +KP +
Sbjct: 126 VGCGVLSSAMCMDKDIAHRIAQSSGVCVPKSISADKAMLLKDILNKAETLRYPVFVKPAR 185

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEI 192
            GSS GI  +     +   ++ +    +  +++IE+ +DG E+ C +    +  +   + 
Sbjct: 186 AGSSFGISRVIDRAELEKAIINAF--EYDSKIVIEENIDGFEVGCAILGNDNLVIGEVDE 243

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
              +S  + Y  KY+   S   +PA+I     + ++  A + + A+ C G +R D    P
Sbjct: 244 IELQSGIFDYNEKYTLKTSKIHMPARIDTVTAERIKDTARILYNALCCTGFARVDMFLTP 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++ + E+N  PG T  S +P M    G SF  ++  ++  A
Sbjct: 304 K-GEIVFNEVNTIPGFTAHSRYPNMLRGVGLSFASIVERLIRMA 346


>gi|326772852|ref|ZP_08232136.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
 gi|326637484|gb|EGE38386.1| D-alanine--D-alanine ligase B [Actinomyces viscosus C505]
          Length = 315

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 84/307 (27%), Positives = 142/307 (46%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q IL  L +PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 68  GPGEDGGLQNILISLGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPQSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   +   + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+           V       Y  + +Y+   S + +PA++   + ++V+
Sbjct: 186 YVAGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLDEAVIEKVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G S  +L
Sbjct: 246 KTAITVHTTLGLGNLSRTDLILDDE-GTPWFIDVNVIPGMTETSLLPIAAEAEG-SLDDL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|227510155|ref|ZP_03940204.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227513084|ref|ZP_03943133.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227083659|gb|EEI18971.1| D-alanine--D-alanine ligase [Lactobacillus buchneri ATCC 11577]
 gi|227190360|gb|EEI70427.1| D-alanine--D-alanine ligase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 375

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 82/345 (23%), Positives = 146/345 (42%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68

Query: 37  DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           DV R     L    P             D+ F ++HGN GEDG +Q +L LL  PY  SG
Sbjct: 69  DVARQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           +L SA+S DK  +K+++   GV            +           +     +KP   GS
Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194
           S+GI  ++        +  +    + +++L+E+ ++G E   ++                
Sbjct: 189 SVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246

Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +D   Y      +        +P  IP  + KE+ ++A  +++A+G +G++R DFL  
Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDIPEALSKELTKMALDSYRALGLKGMARIDFLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               + +  E+N  PG T +S++P++ A +G S+REL+  +++ A
Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLA 350


>gi|225870069|ref|YP_002746016.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
 gi|254767739|sp|C0M8S4|DDL_STRE4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225699473|emb|CAW92994.1| D-alanine--D-alanine ligase [Streptococcus equi subsp. equi 4047]
          Length = 348

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 94/332 (28%), Positives = 158/332 (47%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++MD
Sbjct: 68  NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P     +        + L      +S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAVLSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPAAIDESAMTSMRTYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G S+ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLSYAELIEELVRLA 336


>gi|229823359|ref|ZP_04449428.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
 gi|229787134|gb|EEP23248.1| hypothetical protein GCWU000282_00657 [Catonella morbi ATCC 51271]
          Length = 367

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 83/346 (23%), Positives = 145/346 (41%), Gaps = 51/346 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E ++SL S      ++    ++V  + + +    +               
Sbjct: 8   IVLLYGGQSAEHDISLISAHNIMQSIMYNYYEVQPVYITKQGDWLKGAPLSGPLSHSNQL 67

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F VLHG  GEDG +Q  LE+L +PY
Sbjct: 68  ALTAGPQARWAEGPEGQSVGTLIQPGDIKEADTIVFPVLHGPNGEDGTIQGFLEVLGMPY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---------RFTMDSQHLISPPYVI 130
             +G+ ASA  MDK+ SKQ+    G+P  P +  +          +    +  +  P  +
Sbjct: 128 VGAGVTASACGMDKVISKQLFHQAGLPQVPYVAFDSREWAQSPEEWMNRCEGNLLYPLFV 187

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +         E+      DA   V 
Sbjct: 188 KPANMGSSVGISKATTTEELRAAVEKALQFDRRIVVEQGISAQECEVAVLGNDDAHASVV 247

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              V  +DFY Y+ KY +      +PA++P  I  ++Q  A  A++A+  +G+SR DF  
Sbjct: 248 GRLVKTADFYDYDEKYVNNTVEMEIPAQLPDAISDKIQEYALRAYRALDGKGLSRVDFFV 307

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              S  ++  EIN  PG TP S++P +    G + R+L+  +++ A
Sbjct: 308 TA-SHDIYINEINTMPGFTPYSMYPCLWEATGLNTRDLIEELLQLA 352


>gi|148274154|ref|YP_001223715.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
 gi|147832084|emb|CAN03057.1| putative D-alanine-D-alanine ligase [Clavibacter michiganensis
           subsp. michiganensis NCPPB 382]
          Length = 321

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 96/307 (31%), Positives = 150/307 (48%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A AL  AG + S  D D ++   L    P + + VLHG  
Sbjct: 11  VLAGGISHERDVSLRSGRRVADALRAAGVQASLRDPDATLLDFLRDTPPAVVWPVLHGAS 70

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +  +LEL  +PY  S   ++ L+ DK  +K +  S G+    S+ + + T     
Sbjct: 71  GEDGALLGLLELAGVPYVGSSARSARLAWDKPTAKAIAESAGIRTPRSVTLPKDTFRELG 130

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  PY +KP +GGS+ G+ ++   +++P  +    ++ +GD  LIEQ V
Sbjct: 131 AAAVLRLVTEAVPAPYAVKPARGGSAQGVTIVTDAEALPRAM--VDAYTYGDVALIEQLV 188

Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G E+                   VP S  Y YE +Y++  +    PA+I  D       
Sbjct: 189 EGTEVAIGILDTGDGPEALPATEIVPTSGVYGYEARYNAGLTRFFTPARISPDANAAASA 248

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A   H+A+G   +SR D + D    + +++E+NV PG+T  S+ P+  A AG    +L 
Sbjct: 249 AAIGIHRALGIGQMSRVDIIIDAA-GEPWFIEVNVIPGLTETSLLPQGLAAAGVEVGDLY 307

Query: 290 LWMVEDA 296
             + E A
Sbjct: 308 RRLAEAA 314


>gi|116872268|ref|YP_849049.1| D-alanyl-alanine synthetase A [Listeria welshimeri serovar 6b str.
           SLCC5334]
 gi|123466129|sp|A0AGY4|DDL_LISW6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116741146|emb|CAK20266.1| D-alanine--D-alanine ligase [Listeria welshimeri serovar 6b str.
           SLCC5334]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 145/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLTGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATNTVKLAATESEKSEGEAISPAVLEADDQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVSEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELEDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYSALIERLVDLA 354


>gi|256398138|ref|YP_003119702.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
 gi|256364364|gb|ACU77861.1| D-alanine/D-alanine ligase [Catenulispora acidiphila DSM 44928]
          Length = 315

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 91/312 (29%), Positives = 150/312 (48%), Gaps = 20/312 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VS+ SG+  A AL  AG +V   D+D ++   L   +PD  F  LHG
Sbjct: 7   VVVLAGGLSHERDVSIRSGRRVADALRSAGVEVQVRDIDAALLPSLLADRPDAVFPTLHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ IL LL +PY  S   A   + DK  +K  + + G+     + + + T   
Sbjct: 67  ATGEDGAVQGILALLGVPYVGSSAAACRRAFDKPSAKDAIRTAGLATPDWVAIPKTTFRD 126

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP +GGSSLG   +   + +P  +   + + + +  LIE+
Sbjct: 127 LGTHAVLDAVSAALPMPLFVKPARGGSSLGAAAVHTREDLPSAM--VACFAYDETALIER 184

Query: 171 YVDGIELTCGVMGD---ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++ G E+   V+              V  S  Y Y  +Y++  +    PA++  +  K V
Sbjct: 185 HITGREIAVSVVDTGTGPQALPAVEIVADSGVYDYAARYTAGITEFFAPARLTAEEAKSV 244

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS--- 284
           ++LA  AH  +    +SR+D + D      ++LE+NV PG+T  S+ P  A  A      
Sbjct: 245 EQLAVRAHTTLDLSCVSRTDLILDA-DGIPWFLEVNVAPGLTETSLLPLAAGAADLDLGV 303

Query: 285 -FRELLLWMVED 295
            +R+L+  ++ +
Sbjct: 304 LYRDLVQAVIAE 315


>gi|293401063|ref|ZP_06645208.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291306089|gb|EFE47333.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 354

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 147/349 (42%), Gaps = 52/349 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAH----- 48
           AV+ GG SSE  VSL S  +   +L    +++  I + +             + H     
Sbjct: 7   AVIFGGKSSEYPVSLHSAASLIRSLHKDKYELIFIGISKDGEWFAYDGDVDAIEHDTWMD 66

Query: 49  ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                       L  D  F VLHG  GEDG +Q + EL  IPY 
Sbjct: 67  GNITPCVLSCSTAQKGFLKLKEDGSYETLPVDCIFPVLHGKNGEDGTIQGLFELSGIPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--------PPYVIKP 132
               ++SA+ MDK  +  V+ + G+P  P + V          I          P  IKP
Sbjct: 127 GCDHMSSAICMDKEMAHIVMENAGIPCAPYLCVYEDEHLDYRHIYEEAKAKLGLPIFIKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VT 190
              GSS GI  I         +  +   +   ++++E  ++G E+ C VMG+  L     
Sbjct: 187 ANAGSSFGIHKIASFDDFEESMKDAFYHDGRGKVILETTIEGFEIGCAVMGNKELFAGSV 246

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           +     + F+ YE KY  ++S    PA+I  ++++E + LA  A++A+ C+G++R D   
Sbjct: 247 DEIETAAPFFDYEGKYQMVDSHIYCPARISKELFEEARSLALKAYRAMNCKGMTRVDMFV 306

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            P  + +   E+N  PG T  S +P M   AG  F +LL  ++  A   
Sbjct: 307 TPQ-QSIVMNEVNTIPGFTDTSRYPTMMKEAGIEFGDLLDKLIAFALTR 354


>gi|290892953|ref|ZP_06555943.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
 gi|290557529|gb|EFD91053.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL J2-071]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVAPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|15827889|ref|NP_302152.1| D-alanyl-alanine synthetase A [Mycobacterium leprae TN]
 gi|221230366|ref|YP_002503782.1| D-alanyl-alanine synthetase A [Mycobacterium leprae Br4923]
 gi|18202756|sp|Q9CBS0|DDL_MYCLE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13093442|emb|CAC30631.1| D-alanine-D-alanine ligase A [Mycobacterium leprae]
 gi|219933473|emb|CAR71773.1| D-alanine-D-alanine ligase A [Mycobacterium leprae Br4923]
          Length = 384

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 96/364 (26%), Positives = 155/364 (42%), Gaps = 69/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           +AV+ GG S+E  VS  S  +    L+   F V  + +      +L    PD        
Sbjct: 20  VAVVFGGRSNEHAVSCLSAGSILRNLDRQRFDVVAVGITPEGTWMLTDPNPDALAIANRQ 79

Query: 53  -------------------------------------------LAFNVLHGNFGEDGLVQ 69
                                                      + F VLHG +GEDG +Q
Sbjct: 80  LPAVSCESGIELTLPADPRRSGQLVSLSHGAGLGAGEVLTSVDVVFPVLHGPYGEDGTIQ 139

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLIS 125
            +LEL  +PY  +G+LASA  MDK  +K++ ++ G+P+    +               +S
Sbjct: 140 GLLELARVPYVGAGVLASAAGMDKEFTKKLFAAEGLPLSAYTVLRPLRPTLHRQECERLS 199

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P  +KP +GGSS+GI  +     +P  +  +    H  ++++E  V+G EL CGV+   
Sbjct: 200 LPVFVKPARGGSSIGISRVSSWGQLPSAIAYAR--RHDPKVIVEAAVNGRELECGVLEMP 257

Query: 186 S----------LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                      + V  ++  +  FY +  KY    +   +PAK+  D+  EV++LA  A 
Sbjct: 258 DGTVAASAVGEIRVAGVSGSEDSFYDFTTKYLDDAAELDVPAKVDDDVADEVRQLAIQAF 317

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI C+G++R DF            EIN  PG T  S++P++ A +   +  LL  MV+ 
Sbjct: 318 RAIDCQGLARVDFFLT--DDGPVINEINTMPGFTMTSMYPKLWAVSSVDYPTLLATMVDT 375

Query: 296 ASCL 299
           A   
Sbjct: 376 ALAR 379


>gi|289575688|ref|ZP_06455915.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
 gi|289540119|gb|EFD44697.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 364

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF         +      EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 300 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 359


>gi|260206305|ref|ZP_05773796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis K85]
          Length = 379

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 92/360 (25%), Positives = 152/360 (42%), Gaps = 67/360 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF         +      EIN  PG T +S++P M A +G  +  LL  M+E A   
Sbjct: 315 ARVDFFLTDDGPVINDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIETALAR 374


>gi|289434122|ref|YP_003463994.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
 gi|289170366|emb|CBH26906.1| D-alanine-D-alanine ligase [Listeria seeligeri serovar 1/2b str.
           SLCC3954]
          Length = 370

 Score =  153 bits (385), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  AATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P                +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      Q +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKDYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|294674880|ref|YP_003575496.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
 gi|294474235|gb|ADE83624.1| D-alanine--D-alanine ligase [Prevotella ruminicola 23]
          Length = 330

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 138/323 (42%), Gaps = 31/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +D+                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNVYIVDIKGQDWHVELPDGTTAKIDRNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+GL+Q   +L+ +PY+ SG+L  A++ DK    Q +
Sbjct: 68  SFMENGEAKIFDYAYITIHGTPGENGLLQGYFDLIGLPYSTSGVLVEAMTFDKFVLNQYL 127

Query: 101 SSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV       +           + +  I  P  +KP   GSS G+  +K+   +   +
Sbjct: 128 RGYGVKVADSLLIRKGYEELVSDDEIEERIGMPCFVKPAADGSSFGVSKVKEKDMLAPAI 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
               +     ++++E Y++G E++ GV       V   A        +       +    
Sbjct: 188 --RKAMLESPEIMVESYLEGTEISIGVYKTKEKAVVLPATEVVTSNEFFDYDAKYNGQVQ 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++P D+ + V+++    +  + C GI R DF+       +  LE+N  PGMT  S
Sbjct: 246 EITPARLPEDVTERVRQITSHIYDILHCNGIIRIDFIISKE-GSISMLEVNTTPGMTATS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+    AG S  ++L  +VE+
Sbjct: 305 FIPQQVRAAGLSMTDVLTEIVEN 327


>gi|257438472|ref|ZP_05614227.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
 gi|257199051|gb|EEU97335.1| D-alanine--D-alanine ligase A [Faecalibacterium prausnitzii A2-165]
          Length = 365

 Score =  152 bits (384), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 93/349 (26%), Positives = 155/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + VL GG+SSE EVS  S       L+ A ++V  + + R    +               
Sbjct: 10  VVVLFGGMSSEHEVSRVSAGTFVDNLDRARYEVLTVGITREGRWLCTEATSAQMADGSWE 69

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  L  D+    LHG +GEDG VQ +LEL  IP
Sbjct: 70  ELPGNMPCVISPDRADHGMILFTPSGQVEKLHVDVVIPALHGLWGEDGTVQGLLELAGIP 129

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129
           Y   G+LASA+ MDK  +  +  + G+P    +   R+            +   +  P  
Sbjct: 130 YVGCGVLASAVCMDKAVANALFDAAGIPHTKWLSACRWEIESDLDGVCDGAIAKLGWPIF 189

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI        +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 190 VKPANAGSSVGITKAHDRDELKQAIALAL--ENDHKVVFEAFVDGHEVECAVIGSDPAVA 247

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA++  +   EV+  A +A+ A+ C G++R D
Sbjct: 248 TRPGEILAGAEFYTYDDKYKNGVSQVVIPARLSEEKLDEVKTYAAMAYTALNCEGLARCD 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG TP+S++P++  + G     L+  ++E A
Sbjct: 308 FFVEHGTDRVMINEINTFPGFTPISMYPKLMEHEGTPVPALIDHLIELA 356


>gi|29349121|ref|NP_812624.1| D-alanyl-alanine synthetase A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253571284|ref|ZP_04848691.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298386818|ref|ZP_06996373.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
 gi|39930883|sp|Q8A1F3|DDL_BACTN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|29341028|gb|AAO78818.1| D-alanine--D-alanine ligase [Bacteroides thetaiotaomicron VPI-5482]
 gi|251839237|gb|EES67321.1| D-alanyl-alanine synthetase A [Bacteroides sp. 1_1_6]
 gi|298260492|gb|EFI03361.1| D-alanine--D-alanine ligase [Bacteroides sp. 1_1_14]
          Length = 324

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMQGTRWEVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMLGTEKIRFDFAYITIHGTPGEDGRLQGYFDMMHIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVMEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +       ++L+E +++G ELTCG        V            +       +     +
Sbjct: 185 AFEEA--QEVLVEAFMEGTELTCGCYKTKDKTVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTNRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTTTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|313638777|gb|EFS03864.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL S4-171]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  IATDKIELALTETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P                +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      Q +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|313634152|gb|EFS00812.1| D-alanine--D-alanine ligase [Listeria seeligeri FSL N1-067]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 144/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL    F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALNLDKFEAQPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  IATDKIELALIETEKSSGELISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +   +P                +    + + ++  P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAAIPQVPAVAVRLIDWKNFKDEMIAEMEEVLEYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      Q +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKQELTEAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPICSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+T ++P ++  ++  +++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVAKFYDYKAKYQDNNTTLIIPTEVEPEVLAQMKEYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +   +G  +  L+  +V+ A
Sbjct: 307 FFLT-DDNQLFLNEVNTMPGFTPYSMYPLLWQESGLPYPALIERLVDLA 354


>gi|256826798|ref|YP_003150757.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
 gi|256582941|gb|ACU94075.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Cryptobacterium
           curtum DSM 15641]
          Length = 327

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 145/329 (44%), Gaps = 37/329 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ER +SL SGK    ALE+AG KV  +D  + +   L   +PD+A++ LHG
Sbjct: 3   VAVLMGGASFERAISLDSGKRVCEALEEAGHKVVPLDTTKDLVPTLRSERPDVAYSALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--------------------KQVV 100
             GEDG +Q++LE LEIP+  S       + +K                       + V 
Sbjct: 63  KHGEDGTIQSLLEFLEIPFVGSPAAVCHDTWNKATIPLALRSWAAGQGGMSSASYPQGVC 122

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +                + +     P  +KP  GGS+LG+  ++  + +   L    + 
Sbjct: 123 LARDAMKDMGAATAIDLFEQRIPGGYPLCVKPACGGSALGVHRVECVEDMGAAL--LDAL 180

Query: 161 NHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            + D++L+++++DG+E+         DA        + +   Y  + + S     +  P 
Sbjct: 181 TYDDEVLVQEWIDGVEVAVSILGNGWDAHALPPVEIIVRDGLYDTDARLSDEAVDYYTPV 240

Query: 218 KIP---------LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +             I  E++R +   ++A G   + R D ++D    +   LE+NV PGM
Sbjct: 241 RPSSLSNNEADAQAIRAEIERASLEVYRAYGVCDMGRVDLIWDGAQAR--VLEVNVSPGM 298

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV-EDA 296
           T  S+FP     AG S   +L  +V E A
Sbjct: 299 TERSLFPVACDAAGLSMTAVLDRLVCEHA 327


>gi|254823877|ref|ZP_05228878.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
 gi|293593101|gb|EFG00862.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL J1-194]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 79/349 (22%), Positives = 145/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+                      + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIQQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|46907086|ref|YP_013475.1| D-alanyl-alanine synthetase A [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47092061|ref|ZP_00229854.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|226223473|ref|YP_002757580.1| D-alanine--D-alanine ligase [Listeria monocytogenes Clip81459]
 gi|254852347|ref|ZP_05241695.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|254931236|ref|ZP_05264595.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|255522056|ref|ZP_05389293.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J1-175]
 gi|67460120|sp|Q721W2|DDL_LISMF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46880353|gb|AAT03652.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47019501|gb|EAL10241.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. 4b H7858]
 gi|225875935|emb|CAS04639.1| D-alanine--D-alanine ligase [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258605653|gb|EEW18261.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL R2-503]
 gi|293582785|gb|EFF94817.1| D-Ala-D-Ala ligase [Listeria monocytogenes HPB2262]
 gi|328467129|gb|EGF38219.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 1816]
 gi|328475551|gb|EGF46310.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 220]
 gi|332311262|gb|EGJ24357.1| D-alanine--D-alanine ligase [Listeria monocytogenes str. Scott A]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|306844174|ref|ZP_07476767.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
 gi|306275449|gb|EFM57186.1| D-alanine--D-alanine ligase [Brucella sp. BO1]
          Length = 353

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEANKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|254719320|ref|ZP_05181131.1| D-alanine--D-alanine ligase A [Brucella sp. 83/13]
 gi|256369692|ref|YP_003107202.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|265984322|ref|ZP_06097057.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306839095|ref|ZP_07471912.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
 gi|255999854|gb|ACU48253.1| D-alanine--D-alanine ligase A [Brucella microti CCM 4915]
 gi|264662914|gb|EEZ33175.1| D-alanine-D-alanine ligase A [Brucella sp. 83/13]
 gi|306405642|gb|EFM61904.1| D-alanine--D-alanine ligase [Brucella sp. NF 2653]
          Length = 353

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++ +  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLFNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|223932693|ref|ZP_03624692.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|330832452|ref|YP_004401277.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
 gi|223898663|gb|EEF65025.1| D-alanine/D-alanine ligase [Streptococcus suis 89/1591]
 gi|329306675|gb|AEB81091.1| D-alanine--D-alanine ligase [Streptococcus suis ST3]
          Length = 348

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       ++    + +  ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G     D    +    V    FY Y+ 
Sbjct: 188 LAGLHKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N 
Sbjct: 246 KYIDNKITMEIPAKIDEAIMDTMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336


>gi|257057908|ref|YP_003135740.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
 gi|256587780|gb|ACU98913.1| D-alanine--D-alanine ligase [Saccharomonospora viridis DSM 43017]
          Length = 316

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 94/309 (30%), Positives = 149/309 (48%), Gaps = 16/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  + AL D G  V + D D S+   L   KPD A   LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSVALRDQGLTVQEWDTDASLLDRLKTEKPDAAVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GE+G +Q +LE+L +P+  +       + DK  +K +VS  G      + +   T   
Sbjct: 66  GEGENGSIQTVLEMLGVPFVGTSSRGCRRAWDKPIAKALVSKAGFSTPDWVALPHSTFRE 125

Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V++    +P  +     + +GD +L E+
Sbjct: 126 LGAQPVLDAMVERLGLPLILKPDQGGSALGAQVVRDAADLPAAM--VGCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++DG+E+   V+              VP+   Y Y  +Y++  +    PA++  ++ + V
Sbjct: 184 FIDGVEVAVTVVEYEDGPKALPAVEIVPEGGVYDYTARYTAGLTDFFAPARLSEEVAEAV 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA  AH  +G R ISR+D         V +LE+N  PG+T  S  P     AG S   
Sbjct: 244 SDLAVSAHTLLGLRDISRTD-AVVASDGTVHFLEVNSSPGLTETSTVPMALEAAGTSLGA 302

Query: 288 LLLWMVEDA 296
           +   +V+ A
Sbjct: 303 VFTDLVQRA 311


>gi|5759265|gb|AAD51060.1|AF175293_5 D-alanine:D-lactate ligase [Enterococcus faecium]
          Length = 343

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 77/338 (22%), Positives = 140/338 (41%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AVL GG S E  VS+ S    A+ ++   ++   I + +S    +              
Sbjct: 6   VAVLFGGCSEEHNVSIKSAMEIAANIDTKKYQPYYIGITKSGVWKMCEKPCLEWEQYAGD 65

Query: 51  -------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                     D+   ++HG FGEDG +Q +LEL  IPY    I 
Sbjct: 66  PVVFSPDRSTHGLLIQKDTGYEIQPVDVGLPMIHGKFGEDGSIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +S   MDK  +  VV + G+ V    ++             P  +KP + GSS G+  + 
Sbjct: 126 SSVTCMDKALAYTVVKNAGIAVPGFRILQEGDRLETEDFVYPVFVKPARSGSSFGVNKVC 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           K + +   +  +    +  ++LIE+ V G E+ C ++G+ +  +          + +   
Sbjct: 186 KAEELQAAIEDAR--KYDSKILIEEAVTGSEVGCAILGNGNDLMAGEVDQIELRHGFFKI 243

Query: 206 YSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +               +PA +P ++ + +Q+ A   ++ +GCRG++R D         + 
Sbjct: 244 HQEAQPEKGSENAVIRVPAALPDEVIERIQKTAMKIYRILGCRGLARIDLFLRE-DGCIV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S +P M   AG++  E+L  ++E +
Sbjct: 303 LNEVNTMPGFTSYSRYPRMMTAAGFTLTEILDRLIELS 340


>gi|23502147|ref|NP_698274.1| D-alanyl-alanine synthetase A [Brucella suis 1330]
 gi|161619222|ref|YP_001593109.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|254704548|ref|ZP_05166376.1| D-alanine--D-alanine ligase [Brucella suis bv. 3 str. 686]
 gi|260566209|ref|ZP_05836679.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261755232|ref|ZP_05998941.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
 gi|38257340|sp|Q8G044|DDLA_BRUSU RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|23348110|gb|AAN30189.1| D-alanine--D-alanine ligase A [Brucella suis 1330]
 gi|161336033|gb|ABX62338.1| D-alanine--D-alanine ligase [Brucella canis ATCC 23365]
 gi|260155727|gb|EEW90807.1| D-alanine-D-alanine ligase A [Brucella suis bv. 4 str. 40]
 gi|261744985|gb|EEY32911.1| D-alanine-D-alanine ligase A [Brucella suis bv. 3 str. 686]
          Length = 353

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIATRAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|16802896|ref|NP_464381.1| D-alanyl-alanine synthetase A [Listeria monocytogenes EGD-e]
 gi|224503176|ref|ZP_03671483.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL R2-561]
 gi|22095558|sp|Q8Y8P1|DDL_LISMO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|16410258|emb|CAC98933.1| D-alanine--D-alanine ligase [Listeria monocytogenes EGD-e]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|297565114|ref|YP_003684086.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
 gi|296849563|gb|ADH62578.1| D-alanine/D-alanine ligase [Meiothermus silvanus DSM 9946]
          Length = 324

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 95/321 (29%), Positives = 154/321 (47%), Gaps = 33/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG S E EVSLSS +   +A+           + +    +L                
Sbjct: 8   LIAGGRSGEHEVSLSSARGVLAAMP---HPTDLAVIAKDGKWLLGQAAQRALHTGSAEEG 64

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                         +AF +LHG  GEDG +Q   E+L +PY  +G+ ASAL MDK   K+
Sbjct: 65  EHAFPPPIEWRAYAVAFPLLHGTLGEDGTIQGFFEILGLPYVGAGVTASALCMDKDLCKR 124

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  G+PV P +   R           PY +KP   GSS+G+  +K DQ     L ++ 
Sbjct: 125 VLAQAGIPVVPWVSFYRGDPVPPLPFPAPYFVKPANTGSSVGVSKVKTDQDGREALEEAF 184

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            W    +++IEQ ++G+   E+       A   V      +S+FY Y+ KY+   +   +
Sbjct: 185 RW--DRKVVIEQGLEGVRELEIALLGNIYAEPSVIGEISYQSEFYDYQTKYTEGLAHMRI 242

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP ++ K ++ LA  A++ +G RG++R DF        ++  E+N  PG TP S++P
Sbjct: 243 PARIPAELEKRIRELAVAAYRVLGVRGMARVDFFLS-QDGTLYLNELNTIPGFTPTSMYP 301

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           ++   +G  + ELL  +V  A
Sbjct: 302 KLWQASGMRYPELLDRLVRLA 322


>gi|254827798|ref|ZP_05232485.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
 gi|254832180|ref|ZP_05236835.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 10403S]
 gi|258600179|gb|EEW13504.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N3-165]
          Length = 370

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELVDAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|325335498|gb|ADZ11772.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Riemerella
           anatipestifer RA-GD]
          Length = 327

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 154/327 (47%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E +VSL SG+    +L+   + V ++ V +     L              
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  +            + +  P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAALE 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           ++      D++L+E ++DG+E++       G+  +      +P+++F+ YE K     S 
Sbjct: 186 KAF--LEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQ 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            ++PA++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P S
Sbjct: 243 EIIPARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPAS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299
           I P+ A   G S  +L    VE A   
Sbjct: 301 ILPQQARIYGISITDLCGNEVEKALAK 327


>gi|227871698|ref|ZP_03990109.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
 gi|227842454|gb|EEJ52673.1| D-alanine--D-alanine ligase [Oribacterium sinus F0268]
          Length = 356

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 88/350 (25%), Positives = 143/350 (40%), Gaps = 59/350 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            +L GG S+E EVS  S      A+    +KV  I + +S   +                
Sbjct: 7   VLLFGGQSTEHEVSCRSVLTIKRAVNQEKYKVLCIGITKSGEWIPVEKEESIEDGSWKES 66

Query: 49  --------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                      K D+ F VLHG  GEDG +Q +LE+  IPY   
Sbjct: 67  AERAMILPDAKLSSVLFLGKNGESHLEKIDVVFPVLHGKDGEDGTIQGLLEIARIPYVGC 126

Query: 83  GILASALSMDKMRSKQ------------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           G+L+SA+SMDK+ +K                             +     +  +S P  +
Sbjct: 127 GVLSSAISMDKVYTKMAVEKPLAKIGVRQAKYISFVRSQWENQEKIISKVEAALSYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-- 188
           KP   GSS G+   K  +++   +  + S     ++L+E+ + G EL C V         
Sbjct: 187 KPSNAGSSCGVSKAKDREALKKAVENALSV--DRRVLVEESITGRELECAVFSGKEGQVE 244

Query: 189 --VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                  +  ++FY Y+ KY++ +S   L   I  +I +++++ A     A+    +SR 
Sbjct: 245 SSSVGEILAAAEFYDYDAKYNNPDSKTELHPDISGEIEEKIRKAAETVFLAVDGFSLSRV 304

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       +V + EIN  PG T +S++P +    GYS  EL+  ++E A
Sbjct: 305 DFFL--SGEEVIFNEINTMPGFTSISMYPMLFKKKGYSIEELVEKLLESA 352


>gi|332522758|ref|ZP_08399010.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314022|gb|EGJ27007.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 348

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 94/333 (28%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KP------- 51
            +L GG S+EREVS+ S ++   A+    F V    + +S           KP       
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDRFFVKTYFISQSGDFYKTQEWNQKPAETEKLM 66

Query: 52  --------------D------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                         D      + F +LHG  GEDG +Q  LE+L++PY  + IL+S+++M
Sbjct: 67  TNQTIVADAQVKASDIYEEGAVVFPILHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S GVP     +        +        +S P  +KP   GSS+GI    
Sbjct: 127 DKITTKRVLESAGVPQVAYNVFIEGNSLEECIQETLTKLSFPMFVKPANMGSSVGISKAD 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYE 203
            +  +   +  +    +  ++LIEQ VD  E+  G     D +  +    V +  FY Y+
Sbjct: 187 SETELREAIQLAL--QYDSRILIEQGVDAREIEVGLLGNTDIASTLPGEVVKEVAFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA++  D+  +++  A  A +A+GC G+SR DF        ++  E+N
Sbjct: 245 AKYIDNKITMAIPAELETDLANKMRIYAENAFKALGCCGLSRCDFFLT-KDGFIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G S+ EL+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLSYPELIERLVILA 336


>gi|300790098|ref|YP_003770389.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299799612|gb|ADJ49987.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 342

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 81/338 (23%), Positives = 137/338 (40%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   I + +     L              
Sbjct: 6   VGIIFGGASEEHPVSVKSAQEVARHLDTGKYEPFWIGITKDGAWKLGDGPGESWEAGRTV 65

Query: 47  -------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                +  D+   VLHG  GEDG +Q +LEL  IPY    + +S
Sbjct: 66  VLSPDRSVPGLLVLEDGKYETIGLDVVLPVLHGKLGEDGAMQGLLELSGIPYAGCDVPSS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           AL MDK  +  V +S G+       V           + P  +KP + GSS G+  +   
Sbjct: 126 ALCMDKSLAYVVAASAGIATPKFRTVLAGDD--AGAFTYPVFVKPARSGSSFGVSKVSGR 183

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +   +  ++   +  ++LIE+ V G E+ C V+G+            +  + +   + 
Sbjct: 184 EELAAAISTAA--QYDAKVLIEEAVVGSEVGCAVLGNGRELFAGEVDRIALSHGFFRIHQ 241

Query: 208 SLNS-------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
                      T ++PA +P +    VQ+ A   ++A+GC+G++R D         V   
Sbjct: 242 EEQPESGSENSTPIVPADVPAETRARVQQTAKAIYRALGCKGLARVDMFLT-DDGTVVLN 300

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           E+N  PG+T  S +P M A AG     L+  +V  A  
Sbjct: 301 EVNTLPGLTSYSRYPRMMAAAGVPLSALIDRLVSLAMT 338


>gi|325263136|ref|ZP_08129871.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
 gi|324031529|gb|EGB92809.1| D-alanine--D-alanine ligase [Clostridium sp. D5]
          Length = 351

 Score =  152 bits (384), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 93/351 (26%), Positives = 152/351 (43%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSSAGICRTLLEKGHDAFLLDVFLGFPYNPAHLDEVFTLPGHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                          +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIAKNISTTEPDIEAVKASRPDQSDCFLGPNVIELCRMADITFLGLHGGEGENGKLQATF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR---FTMDSQHLISPPYV 129
           +LL I YT    L  A++MDK  +KQ+    G+     + +++           +  P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMDKGFTKQIFLQTGIDTPAGVSLHKKAAEKSLEALGLKLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  +      L  S    + D+++IE+Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVTTESEYEEALSSSF--RYEDEVVIEEYIKGREFACGIIDGEALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY +  +  V PA I  D    +  L   A++A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQAGATEEVCPADIDEDTADRMMELTVKAYRALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     ++ LE+N  PGMT  S+ P+ A  +G  + +L   +++ +   R
Sbjct: 300 LDSRGN-LYCLEVNTLPGMTAASLLPKEAKASGIEYGDLCELIIQKSLEAR 349


>gi|148560339|ref|YP_001259185.1| D-alanyl-alanine synthetase A [Brucella ovis ATCC 25840]
 gi|148371596|gb|ABQ61575.1| D-alanine--D-alanine ligase A [Brucella ovis ATCC 25840]
          Length = 366

 Score =  152 bits (384), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 152/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++ ++P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVAQVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|148240092|ref|YP_001225479.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
 gi|190359213|sp|A5GML7|DDL_SYNPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|147848631|emb|CAK24182.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 7803]
          Length = 353

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/344 (24%), Positives = 138/344 (40%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL----EDAGFKVSQIDVDRSVGLV--------LAH 48
           + V+ GG S E  VS+ S +    A         F V    +DR             L  
Sbjct: 8   VGVVFGGASGEHAVSIRSARTVIEAFSAPENQERFAVIPHYIDREGRWWGPAVAERALEQ 67

Query: 49  LK-------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            K                          DL + VLHG  GEDG VQ +  L+  P+  SG
Sbjct: 68  NKALDAHELPQPLPAPGLRHWPVDPDSVDLWYPVLHGPNGEDGTVQGLFTLMNKPFVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKP 132
           +L SA+ MDK+  K   ++ G+   P +            + +     +  +  P  +KP
Sbjct: 128 VLGSAVGMDKLAMKAAFAAAGLSQVPYMGLTAADLEDPERLEQLLTRVEQELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI        +   L Q+++ +    +        +E            V   
Sbjct: 188 ANLGSSVGITKANNRDELLAGLHQAAALDPRLLVEQGVNARELECAVLGRRHLRASVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y YE KY+   S  ++PA +P  + +++Q +A  A  A+   G +R D  +D 
Sbjct: 248 IRFDADWYDYETKYTEGRSHTLIPAPLPALVSQQIQAMAIRACHAVHAFGQARVDVFYDE 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            S +++  EIN  PG T  S++P + A +G    +L+  +V+ A
Sbjct: 308 TSGEIWLNEINTLPGFTSQSMYPTLWAASGIPLPQLVAELVDTA 351


>gi|115372760|ref|ZP_01460066.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115370241|gb|EAU69170.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 280

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 100/279 (35%), Positives = 152/279 (54%), Gaps = 7/279 (2%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           A AL   G+ V +IDV + V   L   K D+A+  LHG +GEDG +Q +LE L IPYT S
Sbjct: 2   AKALRSLGYDVVEIDVGKDVAARLTAEKVDVAWLALHGRYGEDGSIQGLLESLFIPYTGS 61

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSS 138
           G+LASA+ MDK+ +K + ++ G+P  P       T   +       S P V+KP + GSS
Sbjct: 62  GVLASAVGMDKVYAKWIFTTHGIPTPPYKTFKDATSAREAADTLPFSYPVVVKPSREGSS 121

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+ V K  ++    +  ++   +   LL+EQ++ G E+   V+ D +L V E+ V +  
Sbjct: 122 VGVHVCKTKEAYLAAVEDAA--RYAGTLLVEQFIPGREVQGAVLDDEALGVIEVVVAREF 179

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +       S   + ++ PA +P D Y+ V  +   AH+A+GC+G SRSD +       VF
Sbjct: 180 YDHTAKYTSGSGTKYLFPAPLPADQYERVNAVCLAAHRALGCQGASRSDVIITE-GGDVF 238

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            LE N  PGMT  S+ P++AA  G  F  L   +++ AS
Sbjct: 239 VLETNTLPGMTETSLLPKIAAGRGIDFPALCERILQGAS 277


>gi|94994662|ref|YP_602760.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10750]
 gi|166198509|sp|Q1J5W7|DDL_STRPF RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94548170|gb|ABF38216.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10750]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 82/331 (24%), Positives = 144/331 (43%), Gaps = 37/331 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
               +   +  + +++    +        IE+           +    +   DFY Y+ K
Sbjct: 187 TKVELRKAIQLALTYDSRVLIEQGVIAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAK 246

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Y     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N  
Sbjct: 247 YVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTM 305

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           PG T  S++P +    G ++ +L+  +V  A
Sbjct: 306 PGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|227496614|ref|ZP_03926892.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
 gi|226833894|gb|EEH66277.1| possible D-alanine--D-alanine ligase [Actinomyces urogenitalis DSM
           15434]
          Length = 320

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 85/305 (27%), Positives = 137/305 (44%), Gaps = 16/305 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG+S ER+VSL SG   A  L+  G  V  +DVD      L    PD+ + ++HG
Sbjct: 14  IAILAGGLSHERDVSLRSGNRVAQVLKHLGHTVLVLDVDARTIASLRAFGPDVVWPLVHG 73

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q IL  L++PY  +       +  K  +K  V + GV    S+ + +     
Sbjct: 74  GPGEDGGLQNILLALDLPYVGTHSDGCQRASFKPTAKAGVRAAGVKTPDSLTLPKAYFSQ 133

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   +   + + + ++ LIE 
Sbjct: 134 LGAQEVLGTVMSRLGLPVVVKPQQGGSGLGVSPASDADQLRNAM--VACFAYDERALIEA 191

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G E+   V+           V       Y  + +Y+   S +  PA++  +    VQ
Sbjct: 192 YVAGREIAVSVVDAGEGPQALPPVEVVTEGQYDFDARYNPGRSEYFAPARLSAEETALVQ 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H+ +G   +SR+D + D      +++++NV PGMT  S+ P  A  AG     L
Sbjct: 252 ETALSVHRTLGLGNVSRTDLILDEQ-GTPWFIDVNVVPGMTETSLLPLAAEAAG-DLPGL 309

Query: 289 LLWMV 293
              +V
Sbjct: 310 YDALV 314


>gi|284046364|ref|YP_003396704.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950585|gb|ADB53329.1| D-alanine/D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 309

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 94/303 (31%), Positives = 137/303 (45%), Gaps = 17/303 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           V  GG S EREVS  SG+  A AL   G  V  IDV      V+   +PD  F  LHG  
Sbjct: 5   VAYGGRSLEREVSARSGQQAAKALRQLGHAVELIDVGADFVDVVQRAEPDFVFIALHGVG 64

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG VQ +LE+L++PYT S  LASAL +DK   K V    GVP  P     +       
Sbjct: 65  GEDGTVQDLLEILQVPYTGSDALASALCLDKHTFKSVCELRGVPTPPWHSFTKQAFADYG 124

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                           V+KP + GSS G+ V+++   +   +    + ++ D++L+E+YV
Sbjct: 125 AGKTLDALWQQFDGRAVVKPARQGSSFGLSVVQERAQLGGAV--LGAMSYDDRVLLERYV 182

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQR 229
            G EL   V+G +        V           + +         +   +P  +   V+ 
Sbjct: 183 PGRELAVTVLGRSDAPEPLPVVEIVMASEEYYSFQAHYEIGQSEVRLAGLPDAVDAHVRA 242

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A+ A GCR  +R D        + + LEIN  PG+T     P  A +AG +F +L+
Sbjct: 243 IAAEAYSAAGCRDFARVDIRL--EGDEPWVLEINTIPGLTETGPTPLAAEHAGLTFAQLI 300

Query: 290 LWM 292
             +
Sbjct: 301 ERI 303


>gi|281356209|ref|ZP_06242702.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
 gi|281317578|gb|EFB01599.1| D-alanine/D-alanine ligase [Victivallis vadensis ATCC BAA-548]
          Length = 702

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 93/297 (31%), Positives = 148/297 (49%), Gaps = 8/297 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L+GG S+ERE+SL SG A A AL + GF V+  DV     L+    + D+ + VLHG F
Sbjct: 319 LLLGGASNEREISLKSGSAVAQALRNGGFDVTVTDVTE-CRLLPEMREADVVYPVLHGGF 377

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
           GEDG +Q ++E   + +  SG  AS L+MDK+ +K+++   G+P     +V R   +   
Sbjct: 378 GEDGRIQKVMEEAGLRFVGSGSAASLLTMDKIATKRLLDRLGIPTAKWSVVTRDRRELPQ 437

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K    GS+ GI+ +++ +     L +  +     +LL+E+Y+DGIE+T  ++
Sbjct: 438 NLKLPLILKVPMEGSTFGIVKVERAEEWDAALEKEFAMA--GELLVEEYIDGIEITVPIV 495

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIG 239
               L   EI  P    Y Y+ KY   +              +   +  R A   +   G
Sbjct: 496 NGEVLPAIEIKSPHGF-YDYDAKYVYKDGHTEYFCPARSLSAEQVADASRQAVKFYLGAG 554

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CR I R DF+        + LE N  PG T  S+ P+ A  +G SF ++   +V  A
Sbjct: 555 CRDILRVDFIV-GKDGVPYMLEGNSIPGCTATSLVPKAAKVSGISFEKMTATLVYAA 610


>gi|50914531|ref|YP_060503.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10394]
 gi|68051961|sp|Q5XB93|DDL_STRP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|50903605|gb|AAT87320.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10394]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+
Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N
Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|28895692|ref|NP_802042.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes SSI-1]
 gi|306827069|ref|ZP_07460367.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
 gi|39930902|sp|Q8K6X7|DDL_STRP3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28810941|dbj|BAC63875.1| putative D-ala,D-ala ligase [Streptococcus pyogenes SSI-1]
 gi|304430815|gb|EFM33826.1| D-alanine-D-alanine ligase [Streptococcus pyogenes ATCC 10782]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+
Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N
Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|19746380|ref|NP_607516.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS8232]
 gi|139473555|ref|YP_001128271.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes str.
           Manfredo]
 gi|25452913|sp|Q8P0C4|DDL_STRP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198510|sp|A2RDW0|DDL_STRPG RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|19748578|gb|AAL98015.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS8232]
 gi|134271802|emb|CAM30035.1| D-alanine--D-alanine ligase [Streptococcus pyogenes str. Manfredo]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIRTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+
Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N
Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|15675338|ref|NP_269512.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes M1 GAS]
 gi|56807611|ref|ZP_00365514.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus pyogenes M49 591]
 gi|71903814|ref|YP_280617.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS6180]
 gi|71910971|ref|YP_282521.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS5005]
 gi|94988835|ref|YP_596936.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS9429]
 gi|94992726|ref|YP_600825.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS2096]
 gi|209559648|ref|YP_002286120.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes NZ131]
 gi|22095564|sp|Q99Z34|DDL_STRP1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123639624|sp|Q48SP8|DDL_STRPM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198506|sp|Q1JAX7|DDL_STRPB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198507|sp|Q1JL27|DDL_STRPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|226729274|sp|B5XM63|DDL_STRPZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|13622520|gb|AAK34233.1| putative D-ala,D-ala ligase [Streptococcus pyogenes M1 GAS]
 gi|71802909|gb|AAX72262.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS6180]
 gi|71853753|gb|AAZ51776.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS5005]
 gi|94542343|gb|ABF32392.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS9429]
 gi|94546234|gb|ABF36281.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS2096]
 gi|209540849|gb|ACI61425.1| D-alanine--D-alanine ligase [Streptococcus pyogenes NZ131]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+
Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N
Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEELVTLA 336


>gi|284801184|ref|YP_003413049.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284994326|ref|YP_003416094.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
 gi|284056746|gb|ADB67687.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5578]
 gi|284059793|gb|ADB70732.1| D-alanyl-alanine synthetase A [Listeria monocytogenes 08-5923]
          Length = 370

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATETVKLAATESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|261317898|ref|ZP_05957095.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|265988927|ref|ZP_06101484.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
 gi|261297121|gb|EEY00618.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|264661124|gb|EEZ31385.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 360

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 15  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 74

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 75  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 134

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 135 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 194

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 195 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 252

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 253 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 312

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 313 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 352


>gi|254710334|ref|ZP_05172145.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis B2/94]
 gi|256031828|ref|ZP_05445442.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M292/94/1]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 183 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|254702007|ref|ZP_05163835.1| D-alanine--D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|254706556|ref|ZP_05168384.1| D-alanine--D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|254714330|ref|ZP_05176141.1| D-alanine--D-alanine ligase A [Brucella ceti M644/93/1]
 gi|254717229|ref|ZP_05179040.1| D-alanine--D-alanine ligase A [Brucella ceti M13/05/1]
 gi|256061348|ref|ZP_05451492.1| D-alanine--D-alanine ligase A [Brucella neotomae 5K33]
 gi|256160007|ref|ZP_05457716.1| D-alanine--D-alanine ligase A [Brucella ceti M490/95/1]
 gi|256255228|ref|ZP_05460764.1| D-alanine--D-alanine ligase A [Brucella ceti B1/94]
 gi|260168962|ref|ZP_05755773.1| D-alanyl-alanine synthetase A [Brucella sp. F5/99]
 gi|261219047|ref|ZP_05933328.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261222425|ref|ZP_05936706.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|261314015|ref|ZP_05953212.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261322107|ref|ZP_05961304.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261325350|ref|ZP_05964547.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261752574|ref|ZP_05996283.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|261758455|ref|ZP_06002164.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|265998392|ref|ZP_06110949.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
 gi|260921009|gb|EEX87662.1| D-alanine-D-alanine ligase A [Brucella ceti B1/94]
 gi|260924136|gb|EEX90704.1| D-alanine-D-alanine ligase A [Brucella ceti M13/05/1]
 gi|261294797|gb|EEX98293.1| D-alanine-D-alanine ligase A [Brucella ceti M644/93/1]
 gi|261301330|gb|EEY04827.1| D-alanine-D-alanine ligase A [Brucella neotomae 5K33]
 gi|261303041|gb|EEY06538.1| D-alanine-D-alanine ligase A [Brucella pinnipedialis M163/99/10]
 gi|261738439|gb|EEY26435.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella sp. F5/99]
 gi|261742327|gb|EEY30253.1| D-alanine-D-alanine ligase A [Brucella suis bv. 5 str. 513]
 gi|262552860|gb|EEZ08850.1| D-alanine-D-alanine ligase A [Brucella ceti M490/95/1]
          Length = 353

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|225627738|ref|ZP_03785775.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
 gi|225617743|gb|EEH14788.1| D-alanine--D-alanine ligase [Brucella ceti str. Cudo]
          Length = 366

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 201 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|225868922|ref|YP_002744870.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
 gi|259645174|sp|C0MCV8|DDL_STRS7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|225702198|emb|CAW99921.1| D-alanine--D-alanine ligase [Streptococcus equi subsp.
           zooepidemicus]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 93/332 (28%), Positives = 157/332 (47%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A++   F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAVDYTKFFVKTYFISQTGQFIKTQEFSSRPTLTERLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NDTIRLEQQIRPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P     +        + L      +S P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVAYTVYIEGQDLDRCLAETEAALSYPVFVKPANMGSSVGISKAES 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
           ++ +   +L +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+ 
Sbjct: 188 EEELRAAILLAL--TYDSRILIEQGVLAREIEVGLLGNTDVKSTLPGEVVKNVDFYDYQA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA I       ++  A  A +AIG  G+SR DF       +++  E+N 
Sbjct: 246 KYIDNEITMAIPATIDESAMTSMRIYAETAFKAIGACGLSRCDFFL-GQDGQIYLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +  + G ++ EL+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWEHMGLNYAELIEELVRLA 336


>gi|224500417|ref|ZP_03668766.1| D-alanyl-alanine synthetase A [Listeria monocytogenes Finland 1988]
          Length = 365

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 80/349 (22%), Positives = 146/349 (41%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|322412133|gb|EFY03041.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 348

 Score =  152 bits (383), Expect = 6e-35,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+EREVS+ S ++   A+    F V    + ++   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERLM 66

Query: 46  -------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F +LHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 67  TNSTIQYEQQIKPSDIYEEDAVVFPLLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
             + +   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   DFY Y+
Sbjct: 187 TKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVDFYDYK 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF       +++  E+N
Sbjct: 245 AKYIDNKITMAIPAEINQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336


>gi|289426939|ref|ZP_06428663.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|289159879|gb|EFD08059.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J165]
 gi|313807118|gb|EFS45613.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA2]
 gi|313819314|gb|EFS57028.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA2]
 gi|313819963|gb|EFS57677.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA1]
 gi|313823244|gb|EFS60958.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA2]
 gi|313824968|gb|EFS62682.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA1]
 gi|314924802|gb|EFS88633.1| D-ala D-ala ligase [Propionibacterium acnes HL036PA3]
 gi|314960640|gb|EFT04742.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA2]
 gi|314978058|gb|EFT22152.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA2]
 gi|314986219|gb|EFT30311.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA2]
 gi|314989565|gb|EFT33656.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA3]
 gi|315084861|gb|EFT56837.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA2]
 gi|315086034|gb|EFT58010.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA3]
 gi|315088247|gb|EFT60223.1| D-ala D-ala ligase [Propionibacterium acnes HL072PA1]
 gi|327327929|gb|EGE69703.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA3]
 gi|327443970|gb|EGE90624.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA2]
 gi|328754950|gb|EGF68566.1| D-ala D-ala ligase [Propionibacterium acnes HL020PA1]
 gi|332675776|gb|AEE72592.1| D-alanine--D-alanine ligase [Propionibacterium acnes 266]
          Length = 365

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAILKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|50842843|ref|YP_056070.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|50840445|gb|AAT83112.1| D-alanine--D-alanine ligase [Propionibacterium acnes KPA171202]
 gi|313813315|gb|EFS51029.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA1]
 gi|315105985|gb|EFT77961.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA1]
          Length = 365

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|326539003|gb|ADZ87218.1| D-alanine--D-alanine ligase [Brucella melitensis M5-90]
          Length = 348

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 183 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|315281534|ref|ZP_07870142.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
 gi|313614821|gb|EFR88357.1| D-alanine--D-alanine ligase [Listeria marthii FSL S4-120]
          Length = 370

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/349 (23%), Positives = 147/349 (42%), Gaps = 56/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWIQGPLLTGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  TVADTVKLATTESEKSAGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P  P++ V      +            ++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVXXXXWKNYQEEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        +E+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELAEAMTEAFLYDRRVVVEQGVVAREVEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVEPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F       ++F  E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 307 FFLTA-DNQLFLNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 354


>gi|296140535|ref|YP_003647778.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
 gi|296028669|gb|ADG79439.1| D-alanine/D-alanine ligase [Tsukamurella paurometabola DSM 20162]
          Length = 362

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 93/354 (26%), Positives = 156/354 (44%), Gaps = 59/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG SSE  VS  S  +    L+ A ++V  + + +S   VL+             
Sbjct: 8   VAVVFGGRSSEHAVSCVSAGSILGHLDPARYEVVPVGITQSGSWVLSDADAQSLRFADRA 67

Query: 51  ---------------------------------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F VLHG +GEDG +Q +LE+  +
Sbjct: 68  LPSVPEGPTDLALLPGAELVSVSSDAAGSVLGSVDVVFPVLHGPYGEDGTLQGLLEMAGV 127

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPL 133
           PY  +G+LASA  MDK  +K+++++ G+PV    ++ +       +  H +  P  +KP 
Sbjct: 128 PYVGAGVLASAAGMDKEFAKKLLAADGLPVGDFHVLRQRETEVPPEVLHRLGLPLFVKPA 187

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT--- 190
           +GGSS+GI  +    ++P  + ++  W    +++IE  V G E+  GV+      V    
Sbjct: 188 RGGSSIGITRVTDLAALPAAIAEARRW--DPKVIIEAAVIGREVEIGVLERPDGTVHASA 245

Query: 191 -----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  A  +  FY +E KY    + + +PA +  +    +  LA  A  A   +G++R
Sbjct: 246 IAEIEMAADAEHAFYDFETKYLDDRAQYTVPADLTEEQTSAIAELAVRAFHAFDGQGLAR 305

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            DF            E+N  PG T  S++P M A +G  + ELL  +++ A   
Sbjct: 306 VDFFQTAEG--PVINEVNTMPGFTSTSMYPRMWAESGIGYAELLSLLIDTALAR 357


>gi|237815687|ref|ZP_04594684.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
 gi|237788985|gb|EEP63196.1| D-alanine--D-alanine ligase [Brucella abortus str. 2308 A]
          Length = 366

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 21  IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 80

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 81  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 140

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 141 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 200

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 201 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 258

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 259 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 318

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 319 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 358


>gi|225852765|ref|YP_002732998.1| D-alanyl-alanine synthetase A [Brucella melitensis ATCC 23457]
 gi|256263750|ref|ZP_05466282.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|225641130|gb|ACO01044.1| D-alanine--D-alanine ligase [Brucella melitensis ATCC 23457]
 gi|263093808|gb|EEZ17813.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella melitensis bv. 2 str.
           63/9]
 gi|326409293|gb|ADZ66358.1| D-alanyl-alanine synthetase A [Brucella melitensis M28]
          Length = 353

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKLSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|153208936|ref|ZP_01947149.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212218748|ref|YP_002305535.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuK_Q154]
 gi|226696386|sp|B6J7Z1|DDL_COXB1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120575594|gb|EAX32218.1| D-alanine--D-alanine ligase [Coxiella burnetii 'MSU Goat Q177']
 gi|212013010|gb|ACJ20390.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuK_Q154]
          Length = 372

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISLIFIDHVGRWYLIDQPEMFLAHSPDH 66

Query: 50  ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++        +        +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +     + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY   N      +    + + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A   R
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354


>gi|62290178|ref|YP_221971.1| D-alanyl-alanine synthetase A [Brucella abortus bv. 1 str. 9-941]
 gi|82700100|ref|YP_414674.1| D-alanyl-alanine synthetase A [Brucella melitensis biovar Abortus
           2308]
 gi|189024413|ref|YP_001935181.1| D-alanyl-alanine synthetase A [Brucella abortus S19]
 gi|254689483|ref|ZP_05152737.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 6 str.
           870]
 gi|254693970|ref|ZP_05155798.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 3 str.
           Tulya]
 gi|254697620|ref|ZP_05159448.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254730511|ref|ZP_05189089.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 4 str.
           292]
 gi|256257731|ref|ZP_05463267.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus bv. 9 str.
           C68]
 gi|260546722|ref|ZP_05822461.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260755006|ref|ZP_05867354.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260758222|ref|ZP_05870570.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260762049|ref|ZP_05874392.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884017|ref|ZP_05895631.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|261214261|ref|ZP_05928542.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297248570|ref|ZP_06932288.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
 gi|62196310|gb|AAX74610.1| DdlA, D-alanine--D-alanine ligase A [Brucella abortus bv. 1 str.
           9-941]
 gi|82616201|emb|CAJ11247.1| D-alanine--D-alanine ligase/VANA/B/C:D-alanine--D-alanine ligase
           [Brucella melitensis biovar Abortus 2308]
 gi|189019985|gb|ACD72707.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella abortus S19]
 gi|260095772|gb|EEW79649.1| D-alanine-D-alanine ligase/VANA/B/C [Brucella abortus NCTC 8038]
 gi|260668540|gb|EEX55480.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 4 str. 292]
 gi|260672481|gb|EEX59302.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675114|gb|EEX61935.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 6 str. 870]
 gi|260873545|gb|EEX80614.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 9 str. C68]
 gi|260915868|gb|EEX82729.1| D-Ala-D-Ala ligase A [Brucella abortus bv. 3 str. Tulya]
 gi|297175739|gb|EFH35086.1| D-alanine-D-alanine ligase A [Brucella abortus bv. 5 str. B3196]
          Length = 353

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 84/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|271970545|ref|YP_003344741.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
 gi|270513720|gb|ACZ91998.1| D-alanine--D-alanine ligase [Streptosporangium roseum DSM 43021]
          Length = 318

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 97/310 (31%), Positives = 151/310 (48%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  +  L  AG  V   D D S+   +    PD  F  LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVSEVLRTAGIVVETRDTDASLVPSILADPPDAVFVTLHGGA 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++++LELL +PY  +G  A  ++ DK  +K VV S G+    S+ + + T     
Sbjct: 69  GEDGAIRSVLELLSVPYVGAGPDACRVAFDKPTAKTVVRSVGLRTPDSVTLPKETFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+LG  +++  + +P  +     + +GD  LIE+ +
Sbjct: 129 ASTVLTRIVERLGLPLFVKPSRGGSALGASIVRAAEDLPAAM--VGCFAYGDTALIERCI 186

Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +G+E+   V+              VP    Y Y  +Y++ ++    PA++  +       
Sbjct: 187 EGVEVAVSVVDLGGGPMALPPVEIVPDKGVYDYAARYTAGHTEFFAPARLSPEAAAACAE 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R ISR+D + D       +LE+NV PGMT  S+ P     AG     L 
Sbjct: 247 MAVTAHTALGLRDISRTDLIVDG-DGLPHFLEVNVAPGMTETSLLPMAVEAAGDDLGTLC 305

Query: 290 LWMVEDASCL 299
             ++E A+  
Sbjct: 306 RVLLEQAAAR 315


>gi|203287658|ref|YP_002222673.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
 gi|226696385|sp|B5RR18|DDL_BORRA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201084878|gb|ACH94452.1| D-alanine--D-alanine ligase [Borrelia recurrentis A1]
          Length = 364

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 154/342 (45%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+SL S     S+L     + V  I VD+ +    L              
Sbjct: 7   LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSIFVDKVTGIWYLLDSVPSSAELIKRH 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL SA+
Sbjct: 67  TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +PV   I   +            D  + ++ P ++KP   GSS+G
Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I V      I   + ++    +   +++E+++   E+ C              EI V   
Sbjct: 187 INVAYNVSQIEKYIEEAF--EYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244

Query: 198 DFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS++        +PA + +    +++  AFL ++ +  RG++R DFL    +
Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  E+N  PG T +S+F +M  + G S+  L+  ++  A
Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346


>gi|222159801|gb|ACM47278.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V   L    P+     
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  +KP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 188 MGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEVV 247

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +  FY Y  KY +      +PA +P D+ ++ +  A  A+  +G  G+SR DF      
Sbjct: 248 KEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYTMLGGSGLSRCDFFLT-NK 306

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQL 347


>gi|313115115|ref|ZP_07800602.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
 gi|310622555|gb|EFQ06023.1| D-ala D-ala ligase [Faecalibacterium cf. prausnitzii KLE1255]
          Length = 363

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 55/349 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG+SSE EVS  S     + ++   ++V  + + +    +               
Sbjct: 8   VVLLFGGMSSEHEVSRVSVGNFVNNIDREKYEVLTVGITKEGRWLYTEATAAQMADGSWE 67

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      +  +  D+   VLHG +GEDG VQ +LEL  IP
Sbjct: 68  DLAGNMACVISPDRADHGMILFTPEGHVEKVHVDVVIPVLHGLWGEDGTVQGLLELAGIP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYV 129
           Y   G+LASA+ MDK  +  +  + GVP    +  +R+             +  +  P  
Sbjct: 128 YVGCGVLASAVCMDKAVANALFEANGVPHTRWLAADRWEIESDLEGVCDGVEKKLGWPVF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI  +     +   +  +    +  +++ E +VDG E+ C V+G      
Sbjct: 188 VKPANAGSSVGISKVSSRDELKKAIDLAL--ENDRKVVFEAFVDGQEVECAVIGSDPAVA 245

Query: 190 TEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           T     +  ++FY+Y+ KY +  S  V+PA +P     EV+  A +A+ A+ C G++R D
Sbjct: 246 TRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLPEAKLDEVKTYAAIAYTALNCEGLARCD 305

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F  +  + +V   EIN  PG T +S++P++  + G    +L+  ++  A
Sbjct: 306 FFVEKGTGRVLINEINTFPGFTSISMYPKLMEHEGLPVPQLIDRLIALA 354


>gi|322389127|ref|ZP_08062690.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
 gi|321144169|gb|EFX39584.1| D-alanine-D-alanine ligase [Streptococcus parasanguinis ATCC 903]
          Length = 348

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 41/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52
           +L GG S+EREVS+ S ++   A++   F V    + +S   +          D      
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V       + +      +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEATLSYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRAALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PG T  S++P +    G ++ +L+  +VE 
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335


>gi|116073344|ref|ZP_01470606.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
 gi|116068649|gb|EAU74401.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9916]
          Length = 353

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 85/344 (24%), Positives = 147/344 (42%), Gaps = 48/344 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E  VS+ S     +ALE       F VS   +D             VLA 
Sbjct: 8   IGLVFGGASGEHAVSIRSANTVIAALEQGQNRERFSVSAFYIDCQGRWWAEEVARAVLAS 67

Query: 49  LKP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +P                         ++ + VLHG  GEDG VQ +  L+  P+  +G
Sbjct: 68  GQPAAPEDLPQPLPSPGFLNLPAGADAVEVWYPVLHGPNGEDGTVQGLFTLMGKPFVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKP 132
           +L S+++MDK+  K   ++ G+   P + +N   +             +  +  P  +KP
Sbjct: 128 VLGSSVAMDKLAMKAAFAAAGLAQVPYVGLNAADLQEPERRDAVVARIEQELGYPCFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              GSS+GI   +    +   L +++S +    +        +E            V   
Sbjct: 188 ANLGSSVGITKARDRSQLLSGLDEAASLDPRIVVEQGVDARELECAVLGKRQLKASVVGE 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
               +D+Y Y  KYS   ST ++PA IP  +  +V+ +A  + +A+   G++R DF +D 
Sbjct: 248 IRFDADWYDYTTKYSDGLSTTLIPAPIPESLQDQVRTMALASCRALCVEGMARVDFFYDD 307

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +  ++  EIN  PG T +S++P +   +G    +L+  +VE A
Sbjct: 308 RTGDLWINEINTLPGFTSLSMYPMLWNASGIGLEQLVAQLVESA 351


>gi|313833066|gb|EFS70780.1| D-ala D-ala ligase [Propionibacterium acnes HL056PA1]
          Length = 365

 Score =  152 bits (383), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRKAVLKAVSRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|12231521|gb|AAG49141.1|AF215736_1 D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 358

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 86/341 (25%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+  EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAGHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPLLWENMGLKYGDLIEELIQL 342


>gi|150391440|ref|YP_001321489.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149951302|gb|ABR49830.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 358

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 139/340 (40%), Gaps = 49/340 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S E  VSL S  A  ++L+   + V  I +                        
Sbjct: 7   VLCGGKSVEHRVSLISASAIINSLDKKKYHVYPIYISDEGIWSNLGIVEDEIKEISELMY 66

Query: 46  -----------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                + ++ F  LHG  GEDG +Q +LE+L+IPY  +G+++SA
Sbjct: 67  QSSNTVISSIETFLRSSFNEREQNIVFPALHGTNGEDGTIQGLLEILDIPYVGNGVMSSA 126

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSL 139
           + +DK+ +K + +   +P      + +              +  I  P  +KP   GSS+
Sbjct: 127 IGIDKVVTKDLFAKHNIPQGKYTRLLQHQWKKDKLFSIERIEETIGYPAYVKPASLGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKS 197
           GI      + +   + ++   +  D+L+IE+ + G E+             V    + + 
Sbjct: 187 GINRCANREELEAAIHEAF--SFEDKLVIEEEIIGREMQISVVGNEFPKASVVGEFIQER 244

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            F  Y  KY+      V+PAK+   + + ++ +A  +   + C G+ R D+       + 
Sbjct: 245 QFMDYAAKYTDGKLIQVIPAKLTEKVSELMREVAIKSFDVLNCSGLVRVDYFVT-DDERF 303

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
           +  E+N  PG T +S+ P +       ++ EL+  ++  A
Sbjct: 304 YVNEVNTMPGFTKLSMTPALWEKTDQTTYPELIEKLINLA 343


>gi|269218666|ref|ZP_06162520.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269211777|gb|EEZ78117.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 370

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 93/360 (25%), Positives = 149/360 (41%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP- 51
           +A++ GG S E  VS  +  +   A++   + V  I + R    V        L    P 
Sbjct: 6   VALIYGGASGEHSVSCMTAASVLRAMDPDKYDVVPIGIRRDGTWVPGSADPDALEAAGPQ 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+AF +LHG FGEDG +Q  L
Sbjct: 66  GEVGGSPSRVLIEIGGKPRALTLVESEGGAPVVEALGSFDVAFPLLHGPFGEDGTIQGFL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHL 123
           E+  +PY   G+ ASA  MDK   K V+ S G+ V P +LV                   
Sbjct: 126 EMAGVPYVGCGVFASAAGMDKHFMKVVLESAGIAVAPYVLVAPRRWRTEKGQILAEIAQK 185

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           ++ P  +KP + GSSLGI  + +   +   +  +       ++++EQ V G E+ C V  
Sbjct: 186 LTFPVFVKPARAGSSLGIGKVLEPGGLERAIAAAQKV--DPKVIVEQGVKGREVECAVLG 243

Query: 182 ----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV-LPAKIPLDIYKEVQRLAFLAHQ 236
                   +  + EI +  +D+Y +E KY      H+ +PA +  D+  E +R+A    +
Sbjct: 244 GRGDAAPRTSILGEIVMDGTDWYDFETKYIQTEGFHMAVPAPVEADVEAEARRIAARVFE 303

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A  C G++R DF       ++   E N  PG T  S++P +  + G  + EL+  +V  A
Sbjct: 304 AFDCEGMTRVDFFLT-DDGEILVNEHNTIPGFTEFSMYPILWEHTGIPYSELIDELVALA 362


>gi|297559174|ref|YP_003678148.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843622|gb|ADH65642.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 374

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 80/358 (22%), Positives = 149/358 (41%), Gaps = 63/358 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE E+S  +  +  S ++   +++  + + R+   VL    P         
Sbjct: 10  VAVVFGGRSSEHEISCVTAGSVLSVVDHDRYEIVPVGITRTGNWVLTSGDPESLRIDAGT 69

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+   +LHG FGEDG +Q + E
Sbjct: 70  RALPSVSEDGVDLALPFDSAGQLMVVDPVKGPERLAGVDVVLPLLHGPFGEDGTIQGLFE 129

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP------ 127
           ++ + Y  +G+ +S+ SMDK+  K ++   G+P    + +      ++            
Sbjct: 130 MMGVRYAGAGVFSSSASMDKVFMKAMLRGNGIPTSDFVAITDRQWRTERKRVLDDVAELG 189

Query: 128 --YVIKPLKGGSSLGI-IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
               +KP + GSS+GI  V     +  +     ++  H  ++L+E  V G E+ CGV+  
Sbjct: 190 ATVFVKPARAGSSVGISKVEDSSDADAVVAAVEAAREHDPKVLVEAQVVGREVECGVLES 249

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAHQAI 238
                 ++++P     +    +    + +       +PA++P +    ++ LA    +A+
Sbjct: 250 EDGGTPDVSLPAEVHVADGFDFYDFEAKYLSTSSLTIPAELPEEATARLRALAAEVFEAM 309

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GC G++R DF +      +   E+N  PG TP S FP+M A  G  +  L+  M+  A
Sbjct: 310 GCEGLARVDFFYTE-DGDILVNELNTMPGFTPASAFPQMWAATGVDYAALVERMISTA 366


>gi|305681869|ref|ZP_07404673.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
 gi|305658342|gb|EFM47845.1| D-ala D-ala ligase N-terminal domain protein [Corynebacterium
           matruchotii ATCC 14266]
          Length = 356

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 158/349 (45%), Gaps = 57/349 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  VS  S  A  S L+   +++  I + +     +    P         
Sbjct: 10  IAIIYGGRSSEHSVSCISAGAIMSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGA 69

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F VLHG +GEDG +Q + EL  +P
Sbjct: 70  MPTVTLTKEVSLAADPARRGQFRFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVP 129

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135
           Y  +G+L+SA  MDK  +K+++++ G+PV   +++      T     L+  P  +KP +G
Sbjct: 130 YVGTGVLSSACGMDKEYTKKLLAAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARG 189

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  + + + +   L ++    +  ++++E  + G E+ CGV+      V      
Sbjct: 190 GSSIGISRVTRWEDMDAALREAR--QYDTKVIVESEIIGDEVECGVLEYPDGTVVASVPA 247

Query: 196 --------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      FY ++ KY   + + ++PA +     + +Q LA  A QA+ C G++R D
Sbjct: 248 QLVNTSVGHEGFYGFDAKYVDGDVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVD 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F            E+N  PG TP+S++P++ A +G  + ELL  ++  A
Sbjct: 308 FFVTQAG--PVLNEVNTMPGFTPISMYPQVFAASGVPYAELLDTLIARA 354


>gi|203284120|ref|YP_002221860.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
 gi|226696384|sp|B5RL25|DDL_BORDL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|201083563|gb|ACH93154.1| D-alanine--D-alanine ligase [Borrelia duttonii Ly]
          Length = 364

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 154/342 (45%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+SL S     S+L     + V  + VD+ +    L              
Sbjct: 7   LIFGGVSFEHEISLRSAYGIYSSLLKLDKYNVFSVFVDKVTGIWYLLDSVPSSAELIKRH 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              L+ D+ F ++HG  GEDG +Q  +++++IP   +GIL SA+
Sbjct: 67  TTSIVNFIPGCGIFVNNKSLEIDVIFPIIHGRTGEDGAIQGFVKMMDIPCVGAGILGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +PV   I   +            D  + ++ P ++KP   GSS+G
Sbjct: 127 SINKYFCKVLLKSFNIPVVSFIGFKKDDYILNKEGIKEDINNKLNYPVIVKPSVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I V      I   + ++    +   +++E+++   E+ C              EI V   
Sbjct: 187 INVAYNVSQIEKYIEEAF--EYDLTVVVEKFIKAREIECAVIGNDQIKIFTPGEIVVQDF 244

Query: 198 DFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS++        +PA + +    +++  AFL ++ +  RG++R DFL    +
Sbjct: 245 IFYDYDAKYSTVPGDSIVFNIPAHLDMKHLLDIKEYAFLTYKYLELRGMARIDFLISKDT 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  E+N  PG T +S+F +M  + G S+  L+  ++  A
Sbjct: 305 NLLYVNEVNTIPGFTDISMFAKMCEHDGLSYESLVDKLITLA 346


>gi|327329971|gb|EGE71725.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL097PA1]
          Length = 365

 Score =  151 bits (382), Expect = 8e-35,   Method: Composition-based stats.
 Identities = 87/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V   ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGRYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|306991644|pdb|3K3P|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
 gi|306991645|pdb|3K3P|B Chain B, Crystal Structure Of The Apo Form Of D-Alanine:d-Alanine
           Ligase (Ddl) From Streptococcus Mutans
          Length = 383

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 44/335 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52
            +L GG S+ER+VS+ S ++   A+    F V    + ++    +   + D         
Sbjct: 41  VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 99

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 100 MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 159

Query: 91  MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           MDK+ + Q       +     V +     +     + +  +  P  +KP   GSS+GI  
Sbjct: 160 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 219

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201
            +    +   +  +    +  ++LIEQ VD  E+  G+    D    +    V    FY 
Sbjct: 220 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 277

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  E
Sbjct: 278 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 336

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T  S++P +    G S+  L+  +V  A
Sbjct: 337 LNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 371


>gi|24379077|ref|NP_721032.1| D-alanyl-alanine synthetase A [Streptococcus mutans UA159]
 gi|26006956|sp|P95803|DDL_STRMU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24376976|gb|AAN58338.1|AE014904_1 putative D-alanine-D-alanine ligase [Streptococcus mutans UA159]
          Length = 349

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 88/335 (26%), Positives = 147/335 (43%), Gaps = 44/335 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52
            +L GG S+ER+VS+ S ++   A+    F V    + ++    +   + D         
Sbjct: 7   VLLYGGRSAERDVSVLSAESVMRAINYDNFLVKTYFITQAG-DFIKTQEFDSQPSETDKL 65

Query: 53  ----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                 + F VLHG  GEDG +Q  LE+L++PY  + IL+S+++
Sbjct: 66  MTNDTIIASQKIKPSDIYEEEAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGTNILSSSVA 125

Query: 91  MDKMRSKQ-------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           MDK+ + Q       +     V +     +     + +  +  P  +KP   GSS+GI  
Sbjct: 126 MDKITTNQVLESATTIPQVAYVALIEGEPLESKLAEVEEKLIYPVFVKPANMGSSVGISK 185

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201
            +    +   +  +    +  ++LIEQ VD  E+  G+    D    +    V    FY 
Sbjct: 186 AENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVGILGNTDVKTTLPGEIVKDVAFYD 243

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY     T  +PA+I   I ++++  A  A + +GC G+SR DF       KV+  E
Sbjct: 244 YEAKYIDNKITMAIPAEIDPVIVEKMRDYAATAFRTLGCCGLSRCDFFLTE-DGKVYLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T  S++P +    G S+  L+  +V  A
Sbjct: 303 LNTMPGFTQWSMYPLLWENMGLSYSVLIEELVSLA 337


>gi|296876858|ref|ZP_06900906.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
 gi|296432360|gb|EFH18159.1| D-alanine--D-alanine ligase [Streptococcus parasanguinis ATCC
           15912]
          Length = 348

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 94/331 (28%), Positives = 158/331 (47%), Gaps = 41/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52
           +L GG S+EREVS+ S ++   A++   F V    + +S   +          D      
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+P  P + V       + +      +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGIPQVPYVAVVEGDDLEEKIAAIEANLSYPVFTKPSNMGSSVGISKSEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRTALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PG T  S++P +    G ++ +L+  +VE 
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335


>gi|261879907|ref|ZP_06006334.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
 gi|270333419|gb|EFA44205.1| D-alanine-D-alanine ligase [Prevotella bergensis DSM 17361]
          Length = 333

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 140/325 (43%), Gaps = 32/325 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG S E +VS+ S +   S  +   + +  +D                 +DR+  
Sbjct: 8   IAIVCGGDSPEHDVSIRSAQGLYSFFDKDRYNIYIVDVRGQDWHVAFDDGDIAKIDRNDF 67

Query: 44  LVLAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  +++ DK      
Sbjct: 68  SFIGQDGKAVVFDYAYITIHGTPGENGIMQGYFDLIHLPYSTSGVLVESMTFDKYVLNNY 127

Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + GV V  SIL+ R     +      +  P  +KP   GSS G+  +K    +   L 
Sbjct: 128 LRAFGVNVADSILLRRDEAYDEAAVEARLGMPVFVKPSANGSSFGVSKVKCADQLAPALR 187

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTH 213
            +      D+++IE +++G E++ G        V   A        +       +     
Sbjct: 188 TAFM--ESDEVMIEGFLEGTEISVGCYKTREKSVVFPATEVVTKNEFFDYDAKYNGQVKE 245

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEINVQPGMTP 270
           + PA++  +  K V       +  + C GI R D++    D  + K+  LEIN  PGMT 
Sbjct: 246 ITPARLSPETTKRVAEETSRIYDILRCNGIIRIDYIISKDDEGNDKINMLEINTTPGMTE 305

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
            S  P+    AG   +++L  +VE+
Sbjct: 306 TSFIPQQVRAAGLDIKDVLSDIVEN 330


>gi|251782869|ref|YP_002997172.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242391499|dbj|BAH81958.1| D-alanylalanine synthetase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|323127673|gb|ADX24970.1| D-alanyl-alanine synthetase A [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 348

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 90/333 (27%), Positives = 155/333 (46%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+EREVS+ S ++   A+    F V    + ++   +                
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFISQTGQFIKTQEFSEKPAATERLM 66

Query: 46  -------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     +KP        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 67  TNSTIQYEQQIKPSDIYEEDAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESAGIPQVAYTVYIDGQDLEACLTETLATLAFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
             + +   +  +    +  ++LIEQ V   E+  G++G+  +  T     V   +FY Y+
Sbjct: 187 TKEELKEAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNTEVKSTLPGEVVKDVEFYDYK 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA+I  D   +++  A  A +A+G  G+SR DF       +++  E+N
Sbjct: 245 AKYIDNKITMAIPAEIDQDTMTKMRTYAESAFKALGGCGLSRCDFFLS-QDGQIYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYSDLIEELVTLA 336


>gi|222159803|gb|ACM47279.1| D-Ala:D-Ala ligase Ddl [Enterococcus avium]
          Length = 359

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V   L    P+     
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGNEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  +KP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 188 MGSSVGISRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEVV 247

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +  FY Y  KY +      +PA +P D+ ++ +  A  A+  +G  G+SR DF      
Sbjct: 248 KEEAFYDYNAKYINNTIQMAIPADVPEDVMQKARDFAKSAYPMLGGSGLSRCDFFLT-NK 306

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  PG T  S++P +    G  + +L+  +++ 
Sbjct: 307 NELFLNELNTMPGFTEFSMYPLLWENMGLKYSDLIEELIQL 347


>gi|254283481|ref|ZP_04958449.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
 gi|219679684|gb|EED36033.1| D-alanine--D-alanine ligase [gamma proteobacterium NOR51-B]
          Length = 311

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 99/292 (33%), Positives = 148/292 (50%), Gaps = 6/292 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL+GG ++ER VSL SG+  A+ L   G +V ++D     G        D AFN+LHG 
Sbjct: 12  AVLLGGTAAERSVSLQSGENVATTLATTGAEVRRVD-TADNGWQQQLKGVDFAFNLLHGP 70

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG VQ  LE   IPY+ SG+L SAL+MDK R+K + +  G+P    +L+NR +    
Sbjct: 71  GGEDGTVQGFLEYEGIPYSGSGVLGSALTMDKARTKWLWAGIGLPTPEFLLLNRDSEWQA 130

Query: 122 HLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P  +KP + GSS+G+        +      ++  ++G  ++ EQY++G E T  
Sbjct: 131 IIDALGPVFVKPTREGSSIGMSHAASASELADAYDNAA--SYGTAVMAEQYIEGSEYTVA 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L         + FY +E KY S ++    P+ +       + +LA  A  A G 
Sbjct: 189 ILGDRALPSI-RIETDAAFYDFEAKYVSEDTRFFCPSGLAEQDEAALAQLALDAFAATGA 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               R D      +     LE+N  PGMT  S+ P  A  AG S  ELL  +
Sbjct: 248 SVWGRVDV-LRRRNGDWQLLEVNTVPGMTSHSLVPMAAKQAGLSMAELLAAI 298


>gi|251799572|ref|YP_003014303.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
 gi|247547198|gb|ACT04217.1| D-alanine/D-alanine ligase [Paenibacillus sp. JDR-2]
          Length = 359

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 88/345 (25%), Positives = 151/345 (43%), Gaps = 51/345 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL------------------ 44
           VL GG S E EVSL +      ++ ++ ++   + + R                      
Sbjct: 7   VLYGGKSVEHEVSLKTAVTVLQSINESRYEAYPVYLTREGLWCTPPGPIAKDELTIERLI 66

Query: 45  ------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                             ++A   P +   +LHG  GEDG VQ +LEL+ +PY  +G+L+
Sbjct: 67  ATPTFPDPARSIGEILSGIMALPGPKVVLPLLHGPNGEDGTVQGLLELVNVPYVGNGVLS 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYVIKPLKGGS 137
           +AL++DK  SKQV++  G+      +       +         +  I  P  +KP   GS
Sbjct: 127 AALTLDKAMSKQVLAQAGINQTEYRVYRYEEWITDEESVLRKAEDSIEYPCYVKPASLGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVP 195
           S+GI        +   + ++   ++  +L+IE+ V G E+   V+G+     +     + 
Sbjct: 187 SIGISRCTNRGELLAGIREAF--SYDKKLVIEREVSGREIQVAVIGNERPLASLPGEFIH 244

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
              F+ YE KY     T  +PA +   +   ++ LA  A+QA GC G++R DF  D    
Sbjct: 245 DHIFFDYESKYMDKRLTMQIPANLADGLTPRIRELAVRAYQAHGCEGLARVDFFLDGE-G 303

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVEDASCL 299
           +++  EIN  PG T  S++P M     G ++ EL+  ++  A   
Sbjct: 304 QLYLNEINALPGFTNFSMYPVMWERTNGTTYSELIEQLIGHAIAR 348


>gi|150009273|ref|YP_001304016.1| D-alanyl-alanine synthetase A [Parabacteroides distasonis ATCC
           8503]
 gi|190359198|sp|A6LFD0|DDL_PARD8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149937697|gb|ABR44394.1| D-alanine--D-alanine ligase [Parabacteroides distasonis ATCC 8503]
          Length = 330

 Score =  151 bits (382), Expect = 9e-35,   Method: Composition-based stats.
 Identities = 77/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE  +SL S     S ++   + +    V R    V+              
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     G ++++E+++DG E+TCG       +V            +       +     +
Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + +Q      +  +G +G+ R D++  P   +   LEIN  PGMT  S  
Sbjct: 243 TPARISTELTELIQCETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+    AG   ++++  ++ED    R
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|295130895|ref|YP_003581558.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|291376113|gb|ADD99967.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK137]
 gi|313771885|gb|EFS37851.1| D-ala D-ala ligase [Propionibacterium acnes HL074PA1]
 gi|313809610|gb|EFS47346.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA1]
 gi|313829929|gb|EFS67643.1| D-ala D-ala ligase [Propionibacterium acnes HL007PA1]
 gi|314972902|gb|EFT16999.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA1]
 gi|314975674|gb|EFT19769.1| D-ala D-ala ligase [Propionibacterium acnes HL045PA1]
 gi|314984142|gb|EFT28234.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA1]
 gi|315080938|gb|EFT52914.1| D-ala D-ala ligase [Propionibacterium acnes HL078PA1]
 gi|315095733|gb|EFT67709.1| D-ala D-ala ligase [Propionibacterium acnes HL038PA1]
 gi|327330066|gb|EGE71819.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL096PA2]
 gi|327442699|gb|EGE89353.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA1]
 gi|327443902|gb|EGE90556.1| D-ala D-ala ligase [Propionibacterium acnes HL043PA2]
 gi|328761412|gb|EGF74938.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL099PA1]
          Length = 365

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAVSRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|172040458|ref|YP_001800172.1| D-alanyl-alanine synthetase A [Corynebacterium urealyticum DSM
           7109]
 gi|229463746|sp|B1VG49|DDL_CORU7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|171851762|emb|CAQ04738.1| D-alanine-D-alanine ligase [Corynebacterium urealyticum DSM 7109]
          Length = 362

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/355 (26%), Positives = 158/355 (44%), Gaps = 63/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV+ GG S+E  VS  S  A    L+   F V  + +      V               
Sbjct: 9   VAVVYGGQSTEHSVSCISAGAIIDNLDPERFTVVPVGITNGGAWVPGATDTAQLRASGRE 68

Query: 47  --------AHLKP--------------------------DLAFNVLHGNFGEDGLVQAIL 72
                    H++P                          D+ F VLHG  GEDG +Q + 
Sbjct: 69  LPTVADHGEHIQPMLGAAGEATEFRFVTGDRAGDVFATADVIFPVLHGANGEDGTIQGLF 128

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYV 129
           +LL   Y  +G+LASA  MDK  +K++    G+P  P ++++     T   + L+  P  
Sbjct: 129 DLLGARYVGNGVLASAAGMDKEFTKKIAREAGIPTGPEVVLHGRTELTDHERELLGLPVF 188

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP +GGSS+GI  +   + +P  + +++  +H  +++IE  + G E+ CGV+      +
Sbjct: 189 VKPARGGSSIGISKVDSWRDLPAAIEEAA--SHDPKVIIEAMITGPEVECGVLEREDGTL 246

Query: 190 TEIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
              +             FY ++ KY     +  +PA +  +  + VQ+LA   ++A+GC 
Sbjct: 247 VASSPAMLEGTDAGEEGFYGFDAKYLDDTVSATIPAPLDEETTRRVQQLAIETYRALGCT 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R DF            EIN  PG TP+S++P+M    G S+ +LL  +V  A
Sbjct: 307 GLARVDFFVTDAG--PVLNEINTMPGFTPISMYPQMFLADGVSYADLLTTLVSGA 359


>gi|88802384|ref|ZP_01117911.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
 gi|88781242|gb|EAR12420.1| D-alanylalanine synthetase [Polaribacter irgensii 23-P]
          Length = 324

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 155/323 (47%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A++MGG SSE ++S+ SG      L+   +   ++                  +D++  
Sbjct: 5   IAIIMGGYSSEADISIKSGNVVYDNLDKEKYTAYRVLISTEKWVALDADGTAYPIDKNNF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             L   A +  D  FN +HG  GE+G + A   L+ + +T +     AL+ +K  +  VV
Sbjct: 65  SFLLQDASILFDCVFNAIHGAPGENGELLAYFNLINLKHTSASFYQMALTYNKRDTLCVV 124

Query: 101 SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + G+    ++ +N             +  P  IKP K GSS GI  +   ++I   +  
Sbjct: 125 KAYGIQTATAVYLNKGAAIDLDTIIAKVGLPCFIKPNKAGSSFGISKVYSREAILPAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           + ++    ++LIE ++ GIE++ GV+    +         V ++DF+ Y+ K  +  S  
Sbjct: 183 ALAYKEDSEILIESFLKGIEVSVGVISYQGVTTVLPITEIVSENDFFDYDAK-YNGKSKE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  K+V+  A   ++ +   G SRS+F+F  ++ + ++LEIN+ PG+T  SI
Sbjct: 242 ITPARITKEQRKKVEEAAKNVYEILNLTGFSRSEFIF--VNEEPYFLEINMVPGLTTQSI 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S  +L    +  A
Sbjct: 300 LPQQALAAGISLADLFDNAIVSA 322


>gi|329944757|ref|ZP_08292836.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328529893|gb|EGF56783.1| D-ala D-ala ligase protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 315

 Score =  151 bits (382), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/307 (26%), Positives = 137/307 (44%), Gaps = 16/307 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER++SL SG   A  L+  G  V  +D+D      L    PD+ + ++HG
Sbjct: 8   IAVLAGGLSHERDISLRSGHRVAQVLKHLGHTVLVLDIDARTIGSLKTFGPDVVWPLVHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +L  L +PY  +       +  K  +K  V + GV    S+ +       
Sbjct: 68  GPGEDGGLQNMLIALGLPYVGTHSDGCQRASFKPTAKASVRTGGVITPDSLTLPHSYFSQ 127

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V+KP +GGS LG+        +   +   + + + ++ LIE+
Sbjct: 128 LGAQEVLTVVAGHLGLPVVVKPHQGGSGLGVSYASTADELRSAM--VACFAYDERALIER 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           YV G EL   V+           V       Y  + +Y+   S + +PA++   + + V+
Sbjct: 186 YVPGTELAVSVVDTGEGPRALPPVEVVTDGQYDFDARYNPGRSEYFVPARLNDSVIEMVK 245

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   H  +G   +SR+D + D      +++++NV PGMT  S+ P  A   G     L
Sbjct: 246 STAVTVHSTLGLGNLSRTDLILDEE-GTPWFIDVNVIPGMTETSLLPIAAKAEG-GLEGL 303

Query: 289 LLWMVED 295
              +V +
Sbjct: 304 YDALVRN 310


>gi|326790614|ref|YP_004308435.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
 gi|326541378|gb|ADZ83237.1| D-alanine/D-alanine ligase [Clostridium lentocellum DSM 5427]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 51/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           V+ GG+S+E EVSL S  A    ++ + + +  + + +    +                 
Sbjct: 8   VIFGGMSNEYEVSLKSAAAAIENMDLSKYNLMMLGITQEGKWLRFFGDVEMIRNHTWLTD 67

Query: 46  ----------------LAHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                           L  L P        D+ F +LHG FGEDG +Q +LEL  IP+  
Sbjct: 68  KSCVEAFISPSREQKGLIELSPEGYKVTEVDVVFPILHGKFGEDGTIQGLLELSGIPFVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGG 136
              LASA+ MDK  + ++V+  G+ V  SI++ +   +++       I  P  IKP K G
Sbjct: 128 CRTLASAICMDKAITHRLVAKEGIKVARSIVLYKEDRNAEQRLEEVDIKLPVYIKPAKSG 187

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAV 194
           SS+GI  +   + +   + ++      D+++IE+ ++G E+ C +    +  +   +   
Sbjct: 188 SSIGITKVFHFEQLEDAISKAF--LEDDKVVIEENINGFEVGCAILGNENPMIGEVDEIE 245

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              DF+ +  KY   NS   +PA++  ++  ++++ A   ++ + C G++R D       
Sbjct: 246 LMGDFFDFNEKYMLANSKIHMPARVEKEVAHQIKKTAIKIYEILSCTGLARVDMFLT-QG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++++ E+N  PG T  S +P+M +  G S+ +++  ++E A
Sbjct: 305 NEIYFNEVNTLPGFTSSSRYPKMMSSIGLSYTDVITRLIELA 346


>gi|253752073|ref|YP_003025214.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|253753898|ref|YP_003027039.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|253755227|ref|YP_003028367.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251816362|emb|CAZ51993.1| D-alanine--D-alanine ligase [Streptococcus suis SC84]
 gi|251817691|emb|CAZ55439.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251820144|emb|CAR46476.1| D-alanine--D-alanine ligase [Streptococcus suis P1/7]
 gi|319758439|gb|ADV70381.1| D-alanine--D-alanine ligase [Streptococcus suis JS14]
          Length = 348

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 90/332 (27%), Positives = 151/332 (45%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 67

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 68  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       ++    + +  ++ P  +KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G     D    +    V    FY Y+ 
Sbjct: 188 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N 
Sbjct: 246 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T  S++P +    G ++ +L+  +V  A
Sbjct: 305 MPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 336


>gi|227524299|ref|ZP_03954348.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
 gi|227088530|gb|EEI23842.1| D-alanine--D-alanine ligase [Lactobacillus hilgardii ATCC 8290]
          Length = 375

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/345 (23%), Positives = 145/345 (42%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   VGLIFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFLMTKNGYFLGTKASTRVFNGEPED 68

Query: 37  DVDRSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           DV R     L    P             D+ F ++HGN GEDG +Q +L LL  PY  SG
Sbjct: 69  DVVRQEIAKLDKSNPLAPILNLSEDSNIDVFFPIIHGNLGEDGTIQGLLRLLNKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           +L SA+S DK  +K+++   GV            +           +     +KP   GS
Sbjct: 129 VLGSAMSFDKDITKKILKLAGVATTRYELLTPLTVEKYSYDSLSAELGKILFVKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194
           S+GI  ++        +  +    + +++L+E+ ++G E   ++                
Sbjct: 189 SVGIHKVETSDDYDEAIRDAF--RYDNKVLVEEAIEGPEELEISVLGNHHPIASKVGSIK 246

Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             +D   Y      +        +P  I   + KE+ ++A  +++A+G +G++R DFL  
Sbjct: 247 VPADDAFYTYDNKFVDASQVKFDVPVDISEALSKELTKMALDSYRALGLKGMARIDFLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               + +  E+N  PG T +S++P++ A +G S+REL+  +++ A
Sbjct: 307 -QDSEPYVSEVNTLPGFTNISLYPQLFAASGISYRELIDRLIQLA 350


>gi|297571651|ref|YP_003697425.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
 gi|296931998|gb|ADH92806.1| D-alanine/D-alanine ligase [Arcanobacterium haemolyticum DSM 20595]
          Length = 372

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 156/360 (43%), Gaps = 67/360 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E  +S+++  A   +L+   + V  I + R    V               
Sbjct: 8   VAVIYGGASGEHSISIATAGAVMRSLDPERYDVLPIGITRDGAWVPGATDASQLTLEAGL 67

Query: 50  ------------------------------------KPDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F +LHG FGEDG +Q +LE
Sbjct: 68  LEVEAAPEAVTLPAGDGTQSLVRYDRENASDLALLGNVDVVFPLLHGPFGEDGTIQGMLE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LIS 125
           +  +PY   G+ ASA  MDK   K V+ + G+PV P ++        +          +S
Sbjct: 128 MAGVPYVGCGVFASAAGMDKHYMKVVLEAAGLPVAPYVVATARKWRDERDQVLADVAKMS 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179
            P  +KP + GSSLGI  + + + +P  +  +    H  ++LIEQ V+G E+ C      
Sbjct: 188 FPVYVKPARAGSSLGITRVARIEDVPAAVAAAQI--HDPKVLIEQGVNGREIECAVLGGR 245

Query: 180 --GVMGDASLDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQ 236
                  + +    + +P+  FY +E KY   +  T  +PA +P +I ++++  A     
Sbjct: 246 GDTTPRASVVGEVLVNLPEDGFYDFEHKYLDTDGLTMSIPANVPEEISEKIRAQAIATFD 305

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A GC G+SR DF   P   + F +E+N  PG TP S++P +    G  + +LL  ++  A
Sbjct: 306 AFGCEGMSRVDFFLTPE-GETFVIELNTIPGFTPFSMYPVLWENTGLPYSQLLDELIALA 364


>gi|116493715|ref|YP_805449.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei ATCC 334]
 gi|191636959|ref|YP_001986125.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227533371|ref|ZP_03963420.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239630957|ref|ZP_04673988.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|301065279|ref|YP_003787302.1| D-alanine-D-alanine ligase-like ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|122264830|sp|Q03CR5|DDL_LACC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485960|sp|B3W7C1|DDL_LACCB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116103865|gb|ABJ69007.1| D-alanine--D-alanine ligase [Lactobacillus casei ATCC 334]
 gi|190711261|emb|CAQ65267.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Lactobacillus casei BL23]
 gi|227189006|gb|EEI69073.1| D-alanine--D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|239527240|gb|EEQ66241.1| D-alanine-D-alanine ligase [Lactobacillus paracasei subsp.
           paracasei 8700:2]
 gi|300437686|gb|ADK17452.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           casei str. Zhang]
 gi|327380987|gb|AEA52463.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei LC2W]
 gi|327384162|gb|AEA55636.1| UDP-N-acetylmuramate--L-alanine ligase [Lactobacillus casei BD-II]
          Length = 357

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 145/341 (42%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG S+ER VS+SSG    +AL   G + + ID+                     +
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVEQVFDDANTSK 62

Query: 41  SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
            +           +  L+PD                  + F  LHG  GE+G VQA+ ++
Sbjct: 63  DLNISDAILTDEDINKLRPDGSTQLFGPNVMAICKAADIVFLALHGGDGENGKVQAVFDI 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R     Q +    P V+KP 
Sbjct: 123 NGVKYTGSGPLASGITMNKVFSKEVMLYHGIQTSGFKEFKRDQGPKQTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +I   + +   L         +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIIHNQEELESGLEDVF--RFDNSAIVEEFTPGREFSLGVVNGHAYSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V    +       +        P  +  D+++ ++ +A      +G +   R DF  +  
Sbjct: 241 VRSGWYDFKHKFQAGYTDFITPPKDLDEDVHQAMKDVAVQTMDVLGLQNYGRIDFFANEK 300

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              V+ +E N  PGMTP+S+ P+ A   G  + +L++ +V 
Sbjct: 301 G--VWVIEANNLPGMTPLSLLPQEAEADGVDYGDLVMDIVN 339


>gi|295397629|ref|ZP_06807704.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
 gi|294974092|gb|EFG49844.1| D-alanine-D-alanine ligase [Aerococcus viridans ATCC 11563]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 44/336 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---LKPD----- 52
           + VL GG S+E ++S+ +  A    ++     V+ + +DR            KPD     
Sbjct: 3   IIVLFGGKSAEHDISILTATAIMQNIQYDRHSVTPVYIDRQGHWFKGSNMTEKPDAQVNF 62

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                + F  LHG  GEDG +Q + E L + Y  +G+LAS+  M
Sbjct: 63  QLDQVGQAIVPTDVLLEGTDQIVFPALHGPNGEDGTIQGLFESLNVAYVGAGVLASSAGM 122

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGII 142
           DK+ SK +++  G+P  P + +  +  +             ++ P  +KP   GSS+G  
Sbjct: 123 DKIVSKHLLNQAGLPQVPFVALTSYEWEKDQEVAIEKVTNELAYPVFVKPANMGSSVG-- 180

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIE---QYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           V +      L    + ++ +  ++L+E   Q    +EL      +  + V         F
Sbjct: 181 VSEAIDDASLLAALTLAFRYDRRVLVETSVQNPREVELAILGNDEVFVSVPGELAKGQGF 240

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y+YE KY    +  ++PA I      ++Q  A  A  A+   G+SR+DF     + +++ 
Sbjct: 241 YNYEEKYLKNTTEMIIPAAIDEPTVAKLQDYARKAFLALDGSGLSRADFFLTE-TGEIYI 299

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            E+N  PG T  S++P +   +G S+ +LL  +++ 
Sbjct: 300 NEVNTLPGFTQFSMYPSLWEASGKSYADLLEELIQL 335


>gi|169630367|ref|YP_001704016.1| D-alanyl-alanine synthetase A [Mycobacterium abscessus ATCC 19977]
 gi|169242334|emb|CAM63362.1| Probable D-alanine--D-alanine ligase DdlA [Mycobacterium abscessus]
          Length = 381

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 153/364 (42%), Gaps = 69/364 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG SSE  +S  S  +    L+ A ++V  + V    G VL    P         
Sbjct: 17  VALVFGGRSSEHAISCVSAGSILRNLDQAVYEVVAVGVTPEGGWVLTDGDPAQLAISDRT 76

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D+ F VLHG +GEDG +Q +L
Sbjct: 77  LPQVTDASGTELLLATDPRRAGQLVNVDSSAAGQVLASVDVVFPVLHGPYGEDGTIQGLL 136

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPY 128
           EL  +PY  +G+LASA  MDK  +K+++++ G+P+    ++         D +  +  P 
Sbjct: 137 ELAGVPYVGAGVLASAAGMDKEFTKKLLAAEGLPIGKYAVIRPRDTTLTLDQREDLGLPV 196

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP + GSS G+  +   + +P  +  +    +  ++++E  + G EL CGV+     D
Sbjct: 197 FVKPARAGSSFGVSRVTAWEELPAAIAHAR--QYDPKVIVEAAIVGRELECGVLEFPDGD 254

Query: 189 VT-------------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                                  FY +E KY    +   +PAK+  D+  +++ LA  A 
Sbjct: 255 TRASVLGEIRVEGVNRDQTAAGAFYDFETKYLDDTAELDVPAKVDDDVSDQIRELAVAAF 314

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AI C+G++R DF            EIN  PG T +S++P M    G  +  LL  MV  
Sbjct: 315 RAIDCQGLARVDFFLAEDG--PLINEINTMPGFTTISMYPRMWDATGVDYPTLLDAMVRT 372

Query: 296 ASCL 299
           A   
Sbjct: 373 ALAR 376


>gi|312867261|ref|ZP_07727471.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
 gi|311097390|gb|EFQ55624.1| D-ala D-ala ligase N-terminal domain protein [Streptococcus
           parasanguinis F0405]
          Length = 348

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/331 (28%), Positives = 157/331 (47%), Gaps = 41/331 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLKPD------ 52
           +L GG S+EREVS+ S ++   A++   F V    + +S   +          D      
Sbjct: 8   LLYGGRSAEREVSVLSAESVMRAIDYQAFSVQTYFITQSGDFIQTQAFEEKPADDEKLMT 67

Query: 53  --------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                               + F VLHG  GEDG +Q  LE+L++PY   GILAS+++MD
Sbjct: 68  NDTVDWSKKVAPSAIYKEGAVVFPVLHGPMGEDGSIQGFLEVLKMPYVGCGILASSVAMD 127

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S  +P  P + V       + +      +S P   KP   GSS+GI   + 
Sbjct: 128 KITTKRVLESAVIPQVPYVAVVEGDDVDEKIATIEATLSYPVFTKPSNMGSSVGISKAEN 187

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y+ 
Sbjct: 188 QTELRTALELAF--KYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDYDA 245

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY     T  +PA++  ++ K ++  A  A +AIG  G++R DF +     ++F  E+N 
Sbjct: 246 KYIDNKITMAIPAQLDPEVVKTMRTNAEKAFRAIGGLGLARCDFFYTDK-GEIFLNELNT 304

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PG T  S++P +    G ++ +L+  +VE 
Sbjct: 305 MPGFTQWSMYPLLWDNMGLNYTDLITKLVEL 335


>gi|256841838|ref|ZP_05547344.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
 gi|256736732|gb|EEU50060.1| D-alanyl-alanine synthetase A [Parabacteroides sp. D13]
          Length = 330

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 29/326 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE  +SL S     S ++   + +    V R    V+              
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVAKHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     G ++++E+++DG E+TCG       +V            +       +     +
Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S  
Sbjct: 243 TPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+    AG   ++++  ++ED    R
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|298208167|ref|YP_003716346.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
 gi|83848088|gb|EAP85958.1| D-alanylalanine synthetase [Croceibacter atlanticus HTCC2559]
          Length = 324

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 89/323 (27%), Positives = 160/323 (49%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A+ MGG SSE ++SL+SG      ++   +   ++ +                    D 
Sbjct: 5   VAIAMGGYSSEFQISLNSGNVVYKHIDLEKYTPYRVHILKEEWLAFDDENHSYVINKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       ++ D+ FN++HG  GEDG +QA LELL IP T     ++AL+ +K  +  V+
Sbjct: 65  SFIKQGKTIRFDVVFNIIHGTPGEDGKLQAYLELLNIPQTACDFYSAALTFNKRDTISVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    ++ +N+    + + I      P  +K  K GSS GI  +   +  P  L  
Sbjct: 125 KPYGIKTATNVFINKGDTVNVNQIISKVGLPCFVKANKAGSSFGISKVYNAEEFPKALDV 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +      D++L+E ++DG E++ GV+   +          V ++DF+ YE K  +  S  
Sbjct: 185 AF--KEDDEVLVESFLDGTEVSVGVITYNTTITALPITEIVSENDFFDYEAK-YNGQSQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I      EVQ++A   ++ +  +G++R++F+F   + +  +LE+N  PG++  SI
Sbjct: 242 ITPARISDAQRDEVQQIAIKIYKTLKLKGLTRAEFIF--HNNEPHFLEVNTCPGLSEASI 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ AA AG S ++L   ++  A
Sbjct: 300 IPQQAAEAGISLKDLFSNVIAAA 322


>gi|148272526|ref|YP_001222087.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147830456|emb|CAN01391.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 369

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 93/357 (26%), Positives = 151/357 (42%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG SSE  +S ++      A++   F+V  + +       L              
Sbjct: 7   VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPDGAFTLQEDDASALALDADA 66

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              + D+ F +LHG  GEDG VQ +LEL
Sbjct: 67  LPRVADNGTRVRWPDGTAGRELTVRDADGAERSLGRVDVVFPILHGTQGEDGTVQGMLEL 126

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISP 126
             +PY  SG+LASAL MDK  +K V+ + G+ V P I V+R           +    +  
Sbjct: 127 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWITVSRHEWAADPGGVRERAAALGL 186

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------G 180
           P  +KP + GSS+G+  +  D  +   L  +      D++L+E  + G E+ C       
Sbjct: 187 PAFVKPARAGSSVGVSRVSADAGLDSALEVAF--REDDRVLVESGLVGREVECAILDEGP 244

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
               ++    EI V   DFY ++ KY   +    V PA +      E++ L+  A +A+ 
Sbjct: 245 GREPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADVTDAELAELRELSIRAFRAVD 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            RG++R DF            EIN  PG TP+S+FP     +G ++ +L+  +++ A
Sbjct: 305 ARGLARVDFFLTAEG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVA 359


>gi|254966997|gb|ACT97534.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 350

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 153/351 (43%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129
           +LL+I YT    L  A++M K  +KQ+    GV           +         ++ P V
Sbjct: 123 DLLDIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L +S    + D+L++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKKSFH--YEDELVVEPYIKGREFACGIIDGTALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     +F LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDA-DGNLFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349


>gi|282859072|ref|ZP_06268204.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
 gi|282588152|gb|EFB93325.1| D-ala D-ala ligase N-terminal domain protein [Prevotella bivia
           JCVIHMP010]
          Length = 332

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 148/326 (45%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + +  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGIYSFFDKERYNIYIVDVKGTDWYVNLPNGDTAPIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   K    D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVFEGKAVVFDYAYITIHGQPGENGVMQGYFELIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G  V  SILV R    ++  I      P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGFNVADSILVRRGETINEKEIEERLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLNST 212
           +   +    ++IE+++DG+E++ G                 V K++F+ Y  K  +    
Sbjct: 188 AFMESSD--VMIEKFLDGMEISQGAYKTKDKGVVVFPATEVVTKNEFFDYNAK-YNGEVE 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMT 269
            + PA++  +  K+V +L    ++ +   GI R D++          +  LEIN  PGMT
Sbjct: 245 EITPARMNPETAKKVAKLTAQIYEILHANGIIRIDYIISKDAEGKDVINMLEINTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
           P S  P+    AG   +E+L  +VE+
Sbjct: 305 PTSFIPQQVRAAGLDIKEVLTEIVEN 330


>gi|256820198|ref|YP_003141477.1| D-alanyl-alanine synthetase A [Capnocytophaga ochracea DSM 7271]
 gi|256581781|gb|ACU92916.1| D-alanine/D-alanine ligase [Capnocytophaga ochracea DSM 7271]
          Length = 325

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYPVRIDRDKWVYVDTQNNEHPIDKNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+    +   I      P  +K  K GSS G  V K  +   L +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEAQLPMYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
             ++   D++LIE ++ G E++ GV+                   +       +  S  +
Sbjct: 183 DKAFEVDDEILIETFLKGTEISIGVINYRGKIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S+ 
Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 300

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P+ A  AG S  EL    +E
Sbjct: 301 PQQAKVAGISLEELFESEIE 320


>gi|154492072|ref|ZP_02031698.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
 gi|154087858|gb|EDN86903.1| hypothetical protein PARMER_01703 [Parabacteroides merdae ATCC
           43184]
          Length = 326

 Score =  151 bits (381), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S +   S L+   + V                     ID  D 
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIVKRDEWAVKLPGGEHTPIDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEIRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 126 KGFGVDIAHSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIDK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +   + G +++IE ++DG E+TCG    A  +V            +       +     +
Sbjct: 186 AF--SEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYNGQVQEI 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  +  ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S  
Sbjct: 244 TPARISAEQTEKVQRETSRIYDILGAKGLIRVDYII-PADGEPKLLEVNTTPGMTATSFI 302

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 303 PQQVRAAGLEMKDVMTDIIEN 323


>gi|227554956|ref|ZP_03985003.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|307286653|ref|ZP_07566739.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|227175899|gb|EEI56871.1| D-alanine--D-alanine ligase [Enterococcus faecalis HH22]
 gi|306502131|gb|EFM71415.1| D-ala D-ala ligase [Enterococcus faecalis TX0109]
 gi|315581762|gb|EFU93953.1| D-ala D-ala ligase [Enterococcus faecalis TX0309A]
          Length = 351

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 142/338 (42%), Gaps = 47/338 (13%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52
            GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P          
Sbjct: 2   YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F VLHG  GEDG +Q  +E + +PY  +G+LAS
Sbjct: 62  AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSS 138
           A +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP   GSS
Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  ++  + +   L ++  ++    +        IE+      D    +    V    
Sbjct: 182 VGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVA 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF       ++F
Sbjct: 242 FYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NELF 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 LNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338


>gi|309777767|ref|ZP_07672715.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308914451|gb|EFP60243.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 354

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 87/347 (25%), Positives = 146/347 (42%), Gaps = 53/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A++ GG SSE  VSL S  +    +    +++  I + +                     
Sbjct: 7   AIIFGGKSSEYPVSLHSAGSLIHKINKERYELIFIGISKDGKWYAYDGDVEGIEHDTWLQ 66

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        ++ D  F +LHG  GEDG +Q + EL  IPY
Sbjct: 67  DKHCTPCVLSSSEGCKGFLKLHADGTFTRMEVDCIFPILHGKNGEDGTIQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131
              G ++SA+ MDK  +  V+   G+   P + V             D++  +  P  IK
Sbjct: 127 VGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEQDDLDYRAVYEDAKEKLGLPIFIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189
           P   GSS GI  ++        +  +   +   ++++E  ++G E+ C VMG+  L    
Sbjct: 187 PANAGSSFGIHKMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGCAVMGNKELFAGS 246

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +     + F+ YE KY  ++S    PA+I  +++ + + +A  A+ A+ C+G++R D  
Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISKELFAQAREIAKKAYCAMNCKGMTRVDMF 306

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P   K+   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 307 VTP-DEKIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDRLVALA 352


>gi|227520089|ref|ZP_03950138.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229546687|ref|ZP_04435412.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|229548782|ref|ZP_04437507.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|257421093|ref|ZP_05598083.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|293383723|ref|ZP_06629630.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|307267923|ref|ZP_07549311.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|307271843|ref|ZP_07553111.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|312904404|ref|ZP_07763564.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|312978682|ref|ZP_07790409.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|227072433|gb|EEI10396.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX0104]
 gi|229306090|gb|EEN72086.1| D-alanine--D-alanine ligase [Enterococcus faecalis ATCC 29200]
 gi|229308193|gb|EEN74180.1| D-alanine--D-alanine ligase [Enterococcus faecalis TX1322]
 gi|257162917|gb|EEU92877.1| D-Ala:D-Ala ligase [Enterococcus faecalis X98]
 gi|291078799|gb|EFE16163.1| D-alanine--D-alanine ligase [Enterococcus faecalis R712]
 gi|306511349|gb|EFM80351.1| D-ala D-ala ligase [Enterococcus faecalis TX0855]
 gi|306515564|gb|EFM84091.1| D-ala D-ala ligase [Enterococcus faecalis TX4248]
 gi|310632231|gb|EFQ15514.1| D-ala D-ala ligase [Enterococcus faecalis TX0635]
 gi|311288389|gb|EFQ66945.1| D-ala D-ala ligase [Enterococcus faecalis DAPTO 516]
 gi|315027032|gb|EFT38964.1| D-ala D-ala ligase [Enterococcus faecalis TX2137]
 gi|315034368|gb|EFT46300.1| D-ala D-ala ligase [Enterococcus faecalis TX0027]
 gi|315148004|gb|EFT92020.1| D-ala D-ala ligase [Enterococcus faecalis TX4244]
 gi|315149605|gb|EFT93621.1| D-ala D-ala ligase [Enterococcus faecalis TX0012]
 gi|315153131|gb|EFT97147.1| D-ala D-ala ligase [Enterococcus faecalis TX0031]
 gi|315155150|gb|EFT99166.1| D-ala D-ala ligase [Enterococcus faecalis TX0043]
 gi|315171748|gb|EFU15765.1| D-ala D-ala ligase [Enterococcus faecalis TX1342]
 gi|329575931|gb|EGG57452.1| D-ala D-ala ligase protein [Enterococcus faecalis TX1467]
          Length = 351

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 141/338 (41%), Gaps = 47/338 (13%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD--------- 52
            GG S E +VS+ S  +  +A+    ++V  + + +    V   L   +P          
Sbjct: 2   YGGRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVLHLTW 61

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                    + F VLHG  GEDG +Q  +E + +PY  +G+LAS
Sbjct: 62  AQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAGVLAS 121

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSS 138
           A +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP   GSS
Sbjct: 122 ANAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPANMGSS 181

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI   +  + +   L ++  ++    +        IE+      D    +    V    
Sbjct: 182 VGISKAENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVVKDVA 241

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF       ++F
Sbjct: 242 FYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK-NELF 300

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 301 LNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 338


>gi|294852606|ref|ZP_06793279.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
 gi|294821195|gb|EFG38194.1| D-alanine-D-alanine ligase [Brucella sp. NVSL 07-0026]
          Length = 348

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 147/341 (43%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 3   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 62

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 63  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+             +  +  P  IKP + GSS+
Sbjct: 123 IPGSANALDKDIAKRLVNEAGLSTAKSVTITRQEVPAFSALEQALGLPIFIKPARQGSSV 182

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G+  I  +      +       + D+LL E+++   E+ CGV+         +       
Sbjct: 183 GVHKIVTEADYQAAMSDGF--TYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 240

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 241 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 301 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 340


>gi|213961705|ref|ZP_03389971.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
 gi|213955494|gb|EEB66810.1| D-ala D-ala ligase [Capnocytophaga sputigena Capno]
          Length = 325

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 137/320 (42%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSAAVVAKNLNQDKYVPYLVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGRKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+    +   I      P  +K  K GSS G  V K  +   L +  
Sbjct: 125 KPFGILSAPSYYLNKGENYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEAQLPMYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
             ++   D++LIE ++ G E++ GV+                   +       +  S  +
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGEIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S+ 
Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 300

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P+ A  AG S  EL    +E
Sbjct: 301 PQQAKVAGISLEELFESEIE 320


>gi|331701247|ref|YP_004398206.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
 gi|329128590|gb|AEB73143.1| D-alanine--D-alanine ligase [Lactobacillus buchneri NRRL B-30929]
          Length = 376

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 76/345 (22%), Positives = 142/345 (41%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           + ++ GG SSE +VS  S      A++   + VS                          
Sbjct: 9   IGLIFGGNSSEHDVSKRSAHNIYDAMDKERYDVSLFLMTKNGYFLDHEASSRVFDGEPED 68

Query: 37  ----------DVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+   +  ++        D+ F ++HGN GEDG +Q +L LL  PY  + 
Sbjct: 69  EVAKQELAKLDLKNPLARIINLAEESDIDVFFPIIHGNLGEDGTIQGLLRLLHKPYVGTA 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIKPLKGGS 137
           IL SA+S DK  +K++V   GVP     ++                +     IKP   GS
Sbjct: 129 ILGSAMSFDKDITKKIVKLAGVPTTRYEVITPLTAEQYSYDSLSDELGQTLFIKPANQGS 188

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE---LTCGVMGDASLDVTEIAV 194
           S+GI  ++  +     +  +    +  ++LIE+ ++G E   ++                
Sbjct: 189 SVGIHKVENAEEYSEGIRDAF--RYDSKVLIEEAIEGPEELEISILGNDHPIASKIGAIR 246

Query: 195 PKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D   Y      +        +P  I  ++ +++  +    ++A+G +G++R D+L  
Sbjct: 247 VPKDDAFYTYDNKFVDASQVKFDVPVDISEELAQQITEMGLTTYRALGLKGMARIDYLVS 306

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               K +  E+N  PG T +S++P++ A +G S+ EL+  +++ A
Sbjct: 307 -KDDKPYMSEVNTLPGFTNISLYPQLFAASGISYSELIDRLIQLA 350


>gi|313837545|gb|EFS75259.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA2]
 gi|314927576|gb|EFS91407.1| D-ala D-ala ligase [Propionibacterium acnes HL044PA1]
 gi|314972484|gb|EFT16581.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA3]
 gi|328907845|gb|EGG27608.1| D-alanine--D-alanine ligase [Propionibacterium sp. P08]
          Length = 365

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 84/355 (23%), Positives = 140/355 (39%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V   +           
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDTERFDVSGVGISPEGVWVRYEVDEIFALPSTGQ 65

Query: 51  --------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                             + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVSDHPLVSVKQMPGGTCIVDTEGNADVVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K +++  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILAEAGVLVGPYVVVRDHEWREDRDAILKAAAHLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +     +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTNPDGLEAAIEAAR--EHDSKVLIEQGIQGREIECSVLDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             + P          +    + +            A +  +    VQ++A  A + +GC 
Sbjct: 244 RASAPGEIVLHDPDGFYDFEAKYLSGGQKASVHARANLDDETRIRVQKVATKAFRVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|226320941|ref|ZP_03796489.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
 gi|226233643|gb|EEH32376.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 29805]
          Length = 361

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +                 +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|323483119|ref|ZP_08088511.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
 gi|323403539|gb|EGA95845.1| hypothetical protein HMPREF9474_00260 [Clostridium symbiosum
           WAL-14163]
          Length = 355

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 90/344 (26%), Positives = 148/344 (43%), Gaps = 56/344 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           V+ GG SSE  VS  S     + ++   + V  + +      +L                
Sbjct: 8   VIFGGQSSEHIVSCMSAVNVINNIDRDTYDVLIVGITEEGHWLLVDSVEAIQDESWRDGT 67

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   +K D AF VLHG +GEDG +Q + EL ++PY   G+
Sbjct: 68  VQAVLSPDATEKSVIVIDGTGIEKIKVDGAFPVLHGLYGEDGTIQGLFELAKLPYVGCGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLISPPYVIKPL 133
           LASA+SMDK  +K +    GV       V +  +             +   + P  IKP 
Sbjct: 128 LASAVSMDKFFTKIIADRVGVRQAAYEPVMKEEIAGTEGMAEAVKRVEARFAYPVFIKPS 187

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE-- 191
             GSS G+   +  + +   L +++   H  ++L+E+ + G E+ C V G+    V    
Sbjct: 188 NAGSSRGVSKAENREQLTEGLTEAA--RHDRKILVEETIVGHEIECAVFGNGKEPVIASG 245

Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +  ++FY +E KY +  S  V+  ++P D  + V+R A    +A+   G++R DF 
Sbjct: 246 VGEVLAAAEFYDFEAKYFNAESRTVVNPELPGDSAERVRRAAVEIFKAVDGYGLARVDFF 305

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                  V + EIN  PG T +S++P +   AG S  EL+  ++
Sbjct: 306 VT-KDGDVVFNEINTMPGFTAISMYPMLFEAAGISKTELVGKLI 348


>gi|326334583|ref|ZP_08200794.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
 gi|325693352|gb|EGD35280.1| D-alanine-D-alanine ligase [Capnocytophaga sp. oral taxon 338 str.
           F0234]
          Length = 327

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 149/322 (46%), Gaps = 32/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           +AVLMGG S E EVSL S       L+ + +    I + +                    
Sbjct: 4   IAVLMGGYSRESEVSLKSAATVVEHLDKSKYASYPILITKEKWVYMDSQNQEFVVDKNDF 63

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L+L   K   D AFN +HG  GEDG +QA   L+ IP T   + ASAL+ +K     V+
Sbjct: 64  SLILKGKKITFDCAFNAIHGTPGEDGYLQAYFALVGIPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +  G+P   +  +N+    S   I      P  +K  + GSS G+     ++ I   + +
Sbjct: 124 NPYGIPRAKAYYLNQGEHFSVREIIKTVGLPCFVKANRSGSSFGVYKAYNEKDIDDAIEK 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +      ++++IE+++ G E++ GV+              V ++DF+ Y+ K     S  
Sbjct: 184 AFEV--DNEIIIEEFLKGTEVSVGVITYRGKKKVLPITEIVSENDFFDYQAK-YQGRSKE 240

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++     ++V+ LA   +  +  +G SRS+++   +  + + LE+N  PG++  SI
Sbjct: 241 ITPARLTAQEKEKVEALALKVYDLLQMKGFSRSEYIL--VGGEPYLLEMNTTPGLSNASI 298

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+ A  AG +   L    +E+
Sbjct: 299 LPQQAKAAGITLANLFDNAIEE 320


>gi|260890294|ref|ZP_05901557.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
 gi|260859914|gb|EEX74414.1| D-alanine--D-alanine ligase [Leptotrichia hofstadii F0254]
          Length = 323

 Score =  151 bits (380), Expect = 1e-34,   Method: Composition-based stats.
 Identities = 85/302 (28%), Positives = 150/302 (49%), Gaps = 10/302 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVL 58
           + V+ GG+S+EREVSL +G    + L    ++V    ID +  V   +  L  D  +  L
Sbjct: 21  VGVIRGGVSTEREVSLKTGSEIVANLNRDKYEVFDIVIDSEMEVFEKVKDLNLDFVYIAL 80

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           HG FGEDG +QAIL+ L + Y+  G+++SA+ MDK  SK++V+  GV +       +   
Sbjct: 81  HGVFGEDGRIQAILQSLGVAYSGPGVMSSAVCMDKEFSKRIVAGYGVRIAKWKSVRVGET 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +    V+KP  GGSS+G+  ++  + +   L          + LIE+ + G
Sbjct: 141 VDFETIKKELGNRVVVKPNNGGSSIGVSFVENQEELEKGLELVFGM--DKEALIEEVLHG 198

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E++  V+         I     D++ YE KY+   +   +  + P  +  E+ + A  +
Sbjct: 199 VEISVPVIDGEVFPTLRIEALAGDYFDYESKYAKGGANEYV-FEFPEKVQAEINKFAKDS 257

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +  + C G +R DF+        +++E+N  PGMT  S+ P+  A  GY + + L  ++E
Sbjct: 258 YYGLKCEGFARIDFMVVNEE-TPYFMEVNTSPGMTSASLLPKSTASKGYDYSQTLDLLIE 316

Query: 295 DA 296
            +
Sbjct: 317 SS 318


>gi|256113828|ref|ZP_05454621.1| D-alanine--D-alanine ligase/VANA/B/C [Brucella melitensis bv. 3
           str. Ether]
 gi|265995177|ref|ZP_06107734.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
 gi|262766290|gb|EEZ12079.1| D-alanine-D-alanine ligase A [Brucella melitensis bv. 3 str. Ether]
          Length = 353

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 151/341 (44%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+E +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAEHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + G+S+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGASV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFIYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAAKAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|312194928|ref|YP_004014989.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
 gi|311226264|gb|ADP79119.1| D-alanine/D-alanine ligase [Frankia sp. EuI1c]
          Length = 374

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/359 (25%), Positives = 153/359 (42%), Gaps = 67/359 (18%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID------------------------ 37
           A++ GG S+E  +S  S +   +A++   ++V  +                         
Sbjct: 11  AIVFGGRSTEHAISCVSARGVLAAVDREKYEVIPVGIAPDGRWLVLPDDPAVLAGVGQEL 70

Query: 38  --------------VDRSVGLV----------------LAHLKPDLAFNVLHGNFGEDGL 67
                          D +   +                L  L  D+ F VLHG +GEDG 
Sbjct: 71  PQVRPEAGRGVVLPPDPNGASLVAVEAAPGGVPAVAGALGDLDVDVVFPVLHGPYGEDGT 130

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLI 124
           +Q +LE+  +PY  SG+ ASA +MDK   K ++++ G+PV P          +   +  +
Sbjct: 131 IQGLLEMAGLPYVGSGVFASAAAMDKQHMKTLLAAAGLPVGPYAVLRAGETLSEAEKRRL 190

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P  +KP +GGSS+GI  +     +   +  +       ++L+E  + G E+ CGV+  
Sbjct: 191 GLPVFVKPARGGSSIGISRVDAWADLDTAIKTAR--ESDPKVLVEAAILGREIECGVLDA 248

Query: 185 ASLDVTEIAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 E ++P          FY +  KYSS  +   +PA +P  I   V+  A  A QA
Sbjct: 249 LGGGPPETSLPAEIVVDSAAGFYDFAAKYSSDATRLDVPADLPAGIADRVRAAAGAAFQA 308

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C G++R D        +V   E+N  PG TP S+FP M A +G  +  L+  +++ A
Sbjct: 309 LDCAGLARVDVFLTAA-GEVVLNEVNTMPGFTPSSLFPRMWAASGLDYPALVERLIQLA 366


>gi|254967001|gb|ACT97536.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 322

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 145/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRS-- 41
           +A++ GG SSE  VSL S +   S ++   + +  ++                 +DR+  
Sbjct: 5   IAIVAGGDSSELPVSLRSAQGIYSFIDKERYNLYIVEMEGHRWEVILPDGTKTPIDRNDF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  GFMENGEKKLFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +    +       I  P  IKP  GGSS G+  +K ++ I   + +
Sbjct: 125 KGFGIRVSESLILRKGFEITDQEVISKIGLPCFIKPNAGGSSFGVTKVKTEEEIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE Y+ G E+TCG       +V            +       +     +
Sbjct: 185 AFH--ESDEVMIEAYMKGTEVTCGCYKTKDKEVVFPITEVVTDNEFFDYDAKYNGQVQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++P D  + V+ L    +  +GC GI R D++      KV  LEIN  PGMT  S  
Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGIIRIDYIITE-GDKVNLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|325001011|ref|ZP_08122123.1| D-alanine--D-alanine ligase [Pseudonocardia sp. P1]
          Length = 311

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 101/311 (32%), Positives = 152/311 (48%), Gaps = 16/311 (5%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVL GG+S EREVSL SG+  A AL   G  V + DVD ++   L   +PD+    LHG 
Sbjct: 2   AVLAGGLSHEREVSLRSGRRLAGALRANGVDVREWDVDSALLERLHSDRPDVVAVALHGG 61

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-- 119
            GE+G VQ ILELL+IP+  +   A   + DK   K  +   G+     + +   T    
Sbjct: 62  EGENGAVQQILELLQIPFVGTPSGACRRAWDKPSVKAELVRAGLTTPDWVALPHSTFREL 121

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P V+KP +GGS+LG+ V++    +P  +   SS+ + D +L EQ+
Sbjct: 122 GAQGVLGAIVDRLGLPLVLKPDQGGSALGVQVVRSADDLPSAM--VSSFAYADTVLAEQF 179

Query: 172 VDGIELTCGVMGDASLDVTEIAVP---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           V G E+   V+ D         V     S FY Y  +Y+   +T   PA++  D+ + + 
Sbjct: 180 VAGTEVAVSVVHDGDEARALPPVEVEVPSGFYDYTSRYTPGAATFHCPARLSSDVQQTLA 239

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  AH+ +G R +SR D + D    +V  LE+NV PG+T  S+ P   A  G     +
Sbjct: 240 ETALTAHRLLGMRDVSRMDAIVDG-DGRVHVLEMNVSPGLTDTSLLPTAVAADGSDLATV 298

Query: 289 LLWMVEDASCL 299
              +V+ A+  
Sbjct: 299 YQALVDRAATR 309


>gi|212716767|ref|ZP_03324895.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660471|gb|EEB21046.1| hypothetical protein BIFCAT_01704 [Bifidobacterium catenulatum DSM
           16992]
          Length = 384

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+  ++ + ++   ++    P         
Sbjct: 12  IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVDGEDPRKWNMSEGL 71

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 72  PVVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191

Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V  +  +  L      + +H  ++L+EQ +D  E
Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + +  + + P         +                     +PA +P +  
Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        +V   EIN  PG TP+S++P+     G S
Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 371 YTDLITTLIE 380


>gi|295396022|ref|ZP_06806206.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
 gi|294971110|gb|EFG47001.1| D-alanine-D-alanine ligase [Brevibacterium mcbrellneri ATCC 49030]
          Length = 369

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/356 (22%), Positives = 147/356 (41%), Gaps = 63/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S E  VS  +     + ++   F++  I +       + H            
Sbjct: 7   VAVLFGGRSPEHSVSCVTAAGVMNEIDPNAFRLLPIGITPEGKWRVVHDWKSFSFDRDNM 66

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                             PD+ F +LHG +GEDG +Q +L L++
Sbjct: 67  PRIEDNQTEVFVSPSKNGSLIERDAQGAFADLGSPDIVFPLLHGQYGEDGTMQGLLSLMD 126

Query: 77  IPYTHSGILASALSMDKMRSKQ--------VVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +P+   G+ +S+  MDK  +K               V +       + T+DS   +  P 
Sbjct: 127 VPFVGPGVFSSSAGMDKHFTKMVLRAAGIPTADWKTVSLTQYQADPQATIDSLQELGLPA 186

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP + GSS+GI  +         L  +    H  ++++E +VDG E+ C V+G  +  
Sbjct: 187 FVKPSRAGSSVGISKVSDTSGFKAALDDAF--AHDTKVIVEPFVDGREIECAVLGSVNDR 244

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGC 240
             + + P     S + ++   ++ +          PA +  D+ + V+ +A    +A  C
Sbjct: 245 ELKASSPGEIIVSGDHEFYDFDAKYLDLDATTLTCPADVEPDVAERVRDIACQTFRAFDC 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G++R D    P + +V   EIN  PG TP S +P M   +G  +++L+  +++ A
Sbjct: 305 TGLTRVDTFVRP-NGEVLVNEINTSPGFTPTSGYPFMWEQSGLPYKDLITELLKIA 359


>gi|165924005|ref|ZP_02219837.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
 gi|39930871|sp|Q83BZ9|DDL_COXBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083039|sp|A9KGD2|DDL_COXBN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|165916550|gb|EDR35154.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 334]
          Length = 372

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 66

Query: 50  ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++        +        +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +     + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY   N      +    + + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A   R
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354


>gi|307564472|ref|ZP_07627013.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
 gi|307346832|gb|EFN92128.1| D-ala D-ala ligase N-terminal domain protein [Prevotella amnii CRIS
           21A-A]
          Length = 332

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 148/326 (45%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + +  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGIYSFFDKDRYNIYIVDVKGTDWHVDLPNGDIAAIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   K    D A+  +HG  GE+G++Q   EL+ +PY+ SG+L  AL+ DK      +
Sbjct: 68  SFVVDGKAVFFDYAYITIHGQPGENGMMQGYFELIHLPYSTSGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SILV R         +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILVRRGESIDEKFVEARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNST 212
           +      ++++IE+Y+ G+E++ G     +           V K++F+ Y  K  +    
Sbjct: 188 AFM--ESNEVMIERYLQGMEISQGAYKTKASGTVVFPATEVVTKNEFFDYNAK-YNGEVQ 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA++  +  ++V  L    +  +   GI R D++   D     V   LEIN  PGMT
Sbjct: 245 EITPARMSPETAQKVSALTDKVYNILHANGIIRIDYIISKDEQGNDVINLLEINTTPGMT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
           P S  P+    AG   +++L  +VE+
Sbjct: 305 PTSFIPQQVRAAGLEMKDVLTDIVEN 330


>gi|26991036|ref|NP_746461.1| D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
 gi|39931111|sp|Q88EV6|DDLA_PSEPK RecName: Full=D-alanine--D-alanine ligase A; AltName:
           Full=D-Ala-D-Ala ligase A; AltName: Full=D-alanylalanine
           synthetase A
 gi|24986067|gb|AAN69925.1|AE016631_4 D-alanine--D-alanine ligase A [Pseudomonas putida KT2440]
          Length = 352

 Score =  151 bits (380), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N      + +         +KP   GSS+G 
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVVPWLAMNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDF 199
            V +   ++      + +     ++L+E  V G E+ CGV+      +      + K + 
Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 200 YSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++Y    +  +S       +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEE-G 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE     AS  R
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351


>gi|313207065|ref|YP_004046242.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
 gi|312446381|gb|ADQ82736.1| D-alanine--D-alanine ligase [Riemerella anatipestifer DSM 15868]
          Length = 327

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 87/327 (26%), Positives = 155/327 (47%), Gaps = 33/327 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E +VSL SG+    +L+   + V ++ V +     L              
Sbjct: 6   IAVVMGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDF 65

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN +HG  GE+G++QA  + +   YT      SAL+ +K  +  V
Sbjct: 66  SVNLPSGEVLRFDVCFNTIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAV 125

Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           ++  G+P   S  +            + +  P  +KP + GSSLGI  +K+       L 
Sbjct: 126 LAKYGIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAAL- 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++   D++L+E ++DG+E++       G+  +      +P+++F+ YE K     S 
Sbjct: 185 -EKAFLEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQ 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA++       V+ +A  A+ ++G +G SRS+++   ++   + LE+N  PG +P S
Sbjct: 243 EITPARLDEATRLRVEEVAKRAYNSLGMKGFSRSEYII--MNGVPYMLEMNTNPGFSPAS 300

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299
           I P+ A   G S ++L    VE A   
Sbjct: 301 ILPQQARIYGISIKDLCGNEVEKALAK 327


>gi|281425097|ref|ZP_06256010.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|299142140|ref|ZP_07035273.1| D-alanine--D-alanine ligase [Prevotella oris C735]
 gi|281400941|gb|EFB31772.1| D-alanine--D-alanine ligase [Prevotella oris F0302]
 gi|298576229|gb|EFI48102.1| D-alanine--D-alanine ligase [Prevotella oris C735]
          Length = 331

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 139/324 (42%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKEKYNVYIVDVKGTDWHVNFSDGATAAIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
               + K    D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKHNGKTVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SI      +      +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVRVADSILLRRGEDYDEEQIEKRLGMPCFVKPSADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      ++++IE Y+DG+E++ G+      +V   A        +       +     +
Sbjct: 188 AFM--ESNEVMIEGYLDGVEISQGIYKTHDKEVVLPATEVVTKNEFFDYDAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271
            PA++  +   +V       +  +   GI R D++   D     V   LEIN  PGMT  
Sbjct: 246 TPARLSKETAAKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +++L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|149371693|ref|ZP_01891109.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
 gi|149355320|gb|EDM43880.1| D-alanylalanine synthetase [unidentified eubacterium SCB49]
          Length = 327

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 132/320 (41%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AVLMGG SSE  +SL+SG     AL+   + V  I +                    D 
Sbjct: 8   IAVLMGGYSSEVNISLNSGHIVCQALDKNKYNVYPIHILKEGWFYVPKTATNIPIDKGDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S   +   + PD  FN +HG  GEDG + A  ELL IP T SG   +ALS +K     V+
Sbjct: 68  SFETLEGTIIPDAVFNTVHGTPGEDGYLAAYFELLGIPQTSSGFYEAALSFNKRDCLSVL 127

Query: 101 SSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV    S   N+            +  P  +KP + GSS GI  +   ++    L  
Sbjct: 128 KNFGVKCANSYYHNQGEPIDVNAVITKVGLPCFVKPNRAGSSFGISKVNTIEAFVPAL-- 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
             ++    +++IE  + G E++ G                     +    +     S  +
Sbjct: 186 ERAYKEDSEIIIETALVGTEVSVGAYSHYGNIKVFNPTEIVSENDFFDYEAKYEGKSQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I     ++V+      +  +  +G+ RS+F+        +++EIN  PG++  SI 
Sbjct: 246 TPARISESDTQKVKAETKRIYNLLKMKGVCRSEFII--QDGVPYFIEINTTPGLSSESII 303

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P+    AG    E    +++
Sbjct: 304 PKQVKDAGMDLGEFFGELID 323


>gi|315225622|ref|ZP_07867431.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
 gi|314944439|gb|EFS96479.1| D-alanine-D-alanine ligase [Capnocytophaga ochracea F0287]
          Length = 325

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/320 (25%), Positives = 138/320 (43%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++MGG S+E  VSL S    A  L    +    + +DR   + +              
Sbjct: 5   IAIIMGGYSNEAPVSLKSATVVAKHLNQDKYVPYPVRIDRDKWVYVDAQNNEHPIDKNDF 64

Query: 48  -------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 65  SVTVNGCKITFDAVFNAIHGTPGEDGYLQAYFNLIGLPLTGCSMYASALTFNKRDMLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+    +   I      P  +K  K GSS G  V K  + + L +  
Sbjct: 125 KPFGILSAPSYYLNKGEDYNTADIVAKVGLPCFVKANKSGSSFG--VYKVYEEVQLPMYI 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
             ++   D++LIE ++ G E++ GV+                   +       +  S  +
Sbjct: 183 DKAFEVDDEILIESFLKGTEISIGVINYRGKIKVLPMTEIVSENDFFDYDAKYNGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S+ 
Sbjct: 243 TPARLSAEMTAKINALAERVYRLLKMEGFSRSEFII--VDDTPYLLEMNTTPGLSEASLL 300

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P+ A  AG S  EL    +E
Sbjct: 301 PQQAKVAGISLEELFESEIE 320


>gi|314983211|gb|EFT27303.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315092432|gb|EFT64408.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
          Length = 365

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ +A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|255015879|ref|ZP_05288005.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_7]
          Length = 330

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 143/326 (43%), Gaps = 29/326 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE  +SL S     S ++   + +    V R    V+              
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKEVSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     G ++++E+++DG E+TCG       +V            +       +     +
Sbjct: 185 AF--GEGREVILERFIDGTEVTCGCYKVEGKEVVFPLTEVVTNNEFFDFDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S  
Sbjct: 243 TPARISTELTELIQRETSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+    AG   ++++  ++ED    R
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|297197149|ref|ZP_06914546.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
 gi|197716566|gb|EDY60600.1| D-alanine:D-lactate ligase [Streptomyces sviceus ATCC 29083]
          Length = 346

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/338 (24%), Positives = 137/338 (40%), Gaps = 45/338 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S E  VS+ S +  A  L+   ++   + + +     L              
Sbjct: 6   VGIIFGGCSEEHPVSVKSAREVAQNLDVEKYEPFFVGITKGGDWRLCNGPDTDWERGDHR 65

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+   VLHG  GEDG +Q +LEL  IPY    I 
Sbjct: 66  PAVLSPDRGDRGLLVLDQGRYETITLDVVLPVLHGKLGEDGAIQGLLELSGIPYVGCDIQ 125

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           +SAL MDK  +  V SS G+       V          IS P  +KP + G S G+  + 
Sbjct: 126 SSALCMDKSLAYLVASSAGIRTPSHWTVTAGEHIDPDRISWPVFVKPARSGPSFGVTKVS 185

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + + +   +  +    +  ++LIE+ V G E+ C V+G+    +T      +  + +   
Sbjct: 186 RREELLSAVETAR--QYDSKVLIEEVVVGSEIGCAVLGNEKGLITGQVDHIALSHGFFRI 243

Query: 206 YSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +              ++PA IP +    V   A   ++A+GCRG++R D        +V 
Sbjct: 244 HQEDQPETGSDNSVAIVPADIPEESRSLVTEQAKALYRALGCRGLARVDMFLRE-DGEVV 302

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PGMT  S +P M A A     E++  +V  A
Sbjct: 303 LNEVNTFPGMTSYSRYPRMMAAADLPLTEVIDRLVSLA 340


>gi|227538332|ref|ZP_03968381.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227241847|gb|EEI91862.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 334

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 146/327 (44%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG + E EVS  S     S L+   + V  I + +                    
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +                         Q  +S PY +KP  GGSS+G+  +K ++ +   +
Sbjct: 125 AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAEAI 184

Query: 155 LQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209
            ++    + G Q+++E++V G E + G+  +      +          +F+ YE KY+  
Sbjct: 185 DKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTREFFDYEAKYTPG 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + PA +  +    +  L    +  + C+G+ R DF  +  + K +++EIN  PG T
Sbjct: 245 LTEEITPADLTEEQQSRIAALLREVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIPGQT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P+    AG    +    ++E A
Sbjct: 305 AQSFIPQQVRAAGMKETDFYGELIEVA 331


>gi|218295191|ref|ZP_03496027.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
 gi|218244394|gb|EED10919.1| D-alanine/D-alanine ligase [Thermus aquaticus Y51MC23]
          Length = 321

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 148/321 (46%), Gaps = 35/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           ++ GG S E EVSL+S +     +    F      + +    +L                
Sbjct: 7   LIAGGKSPEHEVSLASAEGVLKHMP---FPTELAVIAKDGAWLLGEEALRALEAKVAPKG 63

Query: 50  -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      +  + F +LHG  GEDG +Q  LE+L  PY  +G+  SAL MDK  SK+
Sbjct: 64  EHPFPPPLDWDRYGVVFPLLHGPMGEDGTIQGFLEMLGKPYVGAGVAGSALCMDKDFSKR 123

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  G+PV P + + R          PP+ +KP   GSS+GI  +++   +   L ++ 
Sbjct: 124 VLAQAGIPVVPWVALYRGETP-LVPFEPPFFVKPANTGSSIGISRVERYADLEEALEEAF 182

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              H  + ++E+ + G+   E+                  ++ FY YE KY+   +  ++
Sbjct: 183 --RHDRKAVVEKALSGVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 240

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ +A  A++ +G RG++R DF       +++  E+N  PG TP S+FP
Sbjct: 241 PAPLDPGTEETVQEMALKAYKVLGLRGMARVDFFLAE--GELYLNEVNTIPGFTPTSMFP 298

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            +    G ++ ELL  +VE A
Sbjct: 299 RLFLAKGLTYPELLRRLVELA 319


>gi|332828689|gb|EGK01381.1| D-alanine-D-alanine ligase [Dysgonomonas gadei ATCC BAA-286]
          Length = 327

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 146/322 (45%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A++ GG SSE  VS  S     S L+   + + ++ + R    V A             
Sbjct: 5   IAIVWGGYSSEIVVSEKSMSGVYSFLDKEKYNIHKVRIVRESWTVDADGVTYPVDKNDFS 64

Query: 48  --------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                   ++K D AF ++HG  GEDG +Q   ++L IPY+  G++AS+L+M+K      
Sbjct: 65  FTYPEKGMNIKFDFAFIIIHGTPGEDGRLQGYFDMLNIPYSTCGMMASSLTMNKFVCNNF 124

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+ V  S+ +N+ T          +  P  +KP  GGSS     +K  + +   + 
Sbjct: 125 LKNFGIRVADSLYLNKDTRCSIDDIAAKLGFPMFVKPNTGGSSFATTKVKSIEQLQKAID 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTH 213
            +       +++IE ++ G E+TCG       +V            +    +        
Sbjct: 185 IAFGETP--EVIIESFISGQEVTCGCYKIKGKEVVFPITEVVTPNEFFNYEAKYEGQVEE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+IP ++  E+QRL    +  +G +GI R DF+        + LE+N  PGMT  S 
Sbjct: 243 ITPARIPDEMTNEIQRLTRRIYDMVGAKGIIRVDFII--SDNMPYLLEVNTVPGMTQTSF 300

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+  A AG +  ++L  ++E+
Sbjct: 301 IPQQVAAAGLNITDVLTEIIEN 322


>gi|254967027|gb|ACT97549.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 343

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 102/337 (30%), Positives = 154/337 (45%), Gaps = 46/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------DRSVGLV 45
           + VL GG S ER+VSL SG   A++L  +G  V+  DV               D +    
Sbjct: 7   ITVLAGGFSPERDVSLLSGALIANSLCRSGHLVALTDVFYPYRGALSDDAFTSDGNFMYT 66

Query: 46  LAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +    P                          D+ F  LHG  GEDG +QA L  + IPY
Sbjct: 67  VPKEPPDLKALRAEVPGSALIGDGVLELCRLSDIVFLALHGGMGEDGSIQAALSSMGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T S   A  ++MDK  SK +  + G+P     L+ +        I  P V+KP   GSS+
Sbjct: 127 TGSDFAACLVAMDKSLSKLLFRAHGIPTADFTLLKKGDST--DGIPLPCVVKPCSCGSSV 184

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++   +++   L   +++ + +++L E  + G E + GV+   +L       PK  F
Sbjct: 185 GVSIVDTKEALAGAL--ETAYQYEEKVLAEDKICGREFSVGVLLGRALPAI-EIRPKDGF 241

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           Y YE KY S  +  + PA +P      +  LA   H+A+G    SR DF+ +  + K   
Sbjct: 242 YDYERKYQSGMTEEICPADLPEAEAASLGALALKVHRALGLGSYSRIDFIREEKTGKFIC 301

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           LE N  PGMTP+S+ P+ AA AG  +  L L + + A
Sbjct: 302 LEANTLPGMTPMSLLPQEAAAAGIGYDALCLAIAQAA 338


>gi|170722835|ref|YP_001750523.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760838|gb|ACA74154.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 364

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/349 (25%), Positives = 149/349 (42%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSASMIHAALMALGHRVHCVGIDREGSWRYQGEPCQFPGEVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHPSLSYTTQGSDTVEIAIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141
           L SA+SMDK  +K+++ S G+ V P   +N      + +         +KP   GSS+G+
Sbjct: 126 LGSAMSMDKDVTKRMLQSSGLVVGPWRAMNFMRPWEELVECLGSSTLFVKPANSGSSIGV 185

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK----- 196
             +            ++      ++L+E  + G E+ CGV+      +  +         
Sbjct: 186 SKVSNALEYAEAFAIAACQ--DAKVLVEAEICGREIECGVLELEEGLIASVVGEILKKEG 243

Query: 197 SDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             +Y Y+ KY S +     +P+ +  DI + +Q L+  A + +  +G +R DF       
Sbjct: 244 QAYYDYQAKYDSKSGADIRVPSLLAPDIVERIQDLSVQAFRCLELKGYARVDFFLTE-DG 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300
            +   E+N  PG T  S++P+M   +GY   +L+  +VE     AS  R
Sbjct: 303 AIILNEVNTLPGFTGSSMYPKMFECSGYPPEKLVGALVEYALSSASKDR 351


>gi|291303857|ref|YP_003515135.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290573077|gb|ADD46042.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 317

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 93/310 (30%), Positives = 146/310 (47%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+  A AL  A       DVD ++   L    PD     LHG  
Sbjct: 9   VLAGGLSYEREVSLRSGRRVADALSRANVHAELRDVDTNLLPDLIADPPDAVVFALHGGN 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++++L+L+ IPY      A+  + DK  +K ++   G+P    I + R T     
Sbjct: 69  GEDGSLRSVLDLIGIPYVGPDADAARRAWDKPTAKALLRDAGLPTPEWIALPRETFSDLG 128

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS LG+ V++  + +P  +     + +GD  L+E + 
Sbjct: 129 AAKLLDRIVDKLGVPLAVKPARGGSGLGVAVVRTAEELPAAM--IGCFAYGDVALVEAFA 186

Query: 173 DGIELTCGVMGDASLDVTEI---AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ++  GV+               P  D Y +  +Y+   ST  +PA++   + ++V  
Sbjct: 187 PGKDIAVGVVDTGDGPRVFPAVEIEPSGDAYDFAARYNPGASTWHVPARLAPRVSEDVAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A + +G R +SR D +  P +     LE  V PGMT  S+ P     AG+   EL+
Sbjct: 247 VATAAFRTLGLRDLSRIDMMV-PQAGPPLVLEAKVVPGMTETSLLPMACEAAGHDLGELM 305

Query: 290 LWMVEDASCL 299
             +V+ A   
Sbjct: 306 AGLVDRAIAR 315


>gi|209364069|ref|YP_001424774.2| D-alanyl-alanine synthetase A [Coxiella burnetii Dugway 5J108-111]
 gi|215919165|ref|NP_820327.2| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 493]
 gi|206584049|gb|AAO90841.2| D-alanine--D-alanine ligase [Coxiella burnetii RSA 493]
 gi|207082002|gb|ABS77778.2| D-alanine--D-alanine ligase [Coxiella burnetii Dugway 5J108-111]
          Length = 373

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 158/352 (44%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAHSPDH 67

Query: 50  ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 68  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++        +        +    +K
Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +     + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 245

Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY   N      +    + + K++Q++A  A + + C G++R DF
Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A   R
Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 355


>gi|314923643|gb|EFS87474.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314967081|gb|EFT11180.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|315092714|gb|EFT64690.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|315103813|gb|EFT75789.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
 gi|327327215|gb|EGE68991.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL103PA1]
          Length = 365

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 141/355 (39%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ +A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAVKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|323359683|ref|YP_004226079.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
 gi|323276054|dbj|BAJ76199.1| D-alanine-D-alanine ligase [Microbacterium testaceum StLB037]
          Length = 361

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 64/356 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + VL GG SSE  +S ++      A++   F+V  + + R    VL    PD        
Sbjct: 6   VVVLFGGRSSEHSISSATAGGVLRAIDRDRFRVIPVGITRDGAFVLEDDDPDKFALIPEA 65

Query: 53  -------------------------------------LAFNVLHGNFGEDGLVQAILELL 75
                                                +   +LHG FGEDG VQ +LELL
Sbjct: 66  LPQVVDNGTRVRLPDSTLTREWTVTDAEGTWSLGDVDVVLPILHGRFGEDGTVQGLLELL 125

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--------LVNRFTMDSQHLISPP 127
            IPY   G+L SA+ M+K  +KQV+ +  VPV P +                    +  P
Sbjct: 126 GIPYAGGGVLMSAIGMNKHVTKQVLRAANVPVVPWVAVSRADLARDRSLWERRIRALDLP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP + GSS+G+  + + + +   L  +        +L+E+ + G EL CGV+     
Sbjct: 186 VFVKPNEAGSSVGVTKVSRWEDLDAALDTAF--AEDGLVLVEKAIVGRELECGVLPGRDG 243

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGC 240
               ++V      +    Y                PA++      E+QR+A  A +AIG 
Sbjct: 244 GPVRVSVAGEIVVTGREFYDFEAKYLDAPGVDLVCPAELGDGELAEMQRIATQAFEAIGG 303

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +G++R DF       + F  E+N  PG TP+S+FP     +G S+ +L+  +++ A
Sbjct: 304 QGLARVDFF--STGTEFFVNEVNTMPGFTPISMFPTCWIASGLSYPDLISDLLDAA 357


>gi|312149254|gb|ADQ29325.1| D-alanine--D-alanine ligase [Borrelia burgdorferi N40]
          Length = 361

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +LK D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLKIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +                 +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEVREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|88704102|ref|ZP_01101817.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
 gi|88701929|gb|EAQ99033.1| D-alanine--D-alanine ligase [Congregibacter litoralis KT71]
          Length = 315

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 94/285 (32%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S ER+VSL+S     + L D G++   +D              D+AFN+ HG
Sbjct: 12  IAVLFGGTSGERKVSLASADTVLTTLRDGGYEPLALD-TGEPRWWERLEDADIAFNIQHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG+ Q +L  + +  T S +L SAL+MDK+RSKQ+  S G+P     +V+  T  +
Sbjct: 71  VGGEDGVTQGLLASMGVVGTGSDVLGSALAMDKLRSKQLWRSLGLPTANFAMVDAHTDAA 130

Query: 121 QHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             L       IKP   GSSLG+  +             ++  +G+ +L E+++DG E T 
Sbjct: 131 ALLSEWGAAFIKPSAEGSSLGMSRVDSVDGFKAA--CEAAAVYGEGILAEEFIDGPEYTV 188

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD +L    I   +   Y YE KY   ++ + +P  +     + + RLA  A  A+G
Sbjct: 189 AILGDRALPPIRIEASREF-YDYEAKYKGNSTRYHIPCGLSDGEEETLCRLALEAFAALG 247

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           C    R D + +    +   LE+N  PGMT  S+ P  A  AG S
Sbjct: 248 CSIWGRVDLMRNRR-GEFQLLEVNTVPGMTDHSLVPMAAKAAGMS 291


>gi|227529650|ref|ZP_03959699.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
 gi|227350440|gb|EEJ40731.1| D-alanine--D-alanine ligase [Lactobacillus vaginalis ATCC 49540]
          Length = 426

 Score =  150 bits (379), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/342 (23%), Positives = 143/342 (41%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S      AL+   + VS     +   L+               
Sbjct: 55  IALLFGGNSSEHDVSKRSAHNIYDALDKDKYNVSLFMFTKDGILLGNSASQRIFNGDDED 114

Query: 46  ---------------------LAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                L  +K  DL F V+HGN GEDG VQ + +LL+ PY  S 
Sbjct: 115 QVVQEEYQKMNLNQPLAPIMALNEMKAVDLFFPVIHGNLGEDGTVQGLFKLLKKPYVGSN 174

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASA++ DK  +K++++  G+   P +        +      +  I     +KP K GS
Sbjct: 175 IAASAMAFDKDLTKKILTEAGIRNTPYVVVTPENRADYPWAKVEEKIGDLAFVKPAKQGS 234

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  +++   +              +  +  +     AV   
Sbjct: 235 SVGIHKVTNAEEYEKALDDAFKYDYKILVEQGIDHPQEVEISILGNEHPVASKLGAVRVP 294

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +  S+    +           LP K+P  + +E+  +A  A++ +G +G++R DFL D  
Sbjct: 295 EGDSFYNYENKFVDASGVVFELPVKLPEYLTEEITSMALKAYKVLGMKGMARIDFLVD-S 353

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G  + +L+  +++ 
Sbjct: 354 NNVPYLGEPNTLPGFTNISLYPQMWEVSGIGYSDLIDRLIQL 395


>gi|225351209|ref|ZP_03742232.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158665|gb|EEG71907.1| hypothetical protein BIFPSEUDO_02799 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 384

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+  ++ + ++   ++    P         
Sbjct: 12  IVVMYGGKADEHSISCISAAGVLRALDTDKFEAIEVGITKNGEWIVGGEDPRKWNMSEGL 71

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 72  PMVEKTDSSKDVVLDVALGQDGFFAREDDGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 131

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 132 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDVRDYDAASEFAAEADEMLA 191

Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V  +  +  L      + +H  ++L+EQ +D  E
Sbjct: 192 AVQQAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVFEASHHDWRVLVEQGIDARE 251

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + +  + + P         +                     +PA +P +  
Sbjct: 252 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYVNSDASHVEVPASLPEETL 311

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        +V   EIN  PG TP+S++P+     G S
Sbjct: 312 NRVRETAKKAFIAVDGAGLSRVDTFVTA-DGEVMVNEINTMPGFTPISMYPKAWEATGVS 370

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 371 YTDLITTLIE 380


>gi|313827268|gb|EFS64982.1| D-ala D-ala ligase [Propionibacterium acnes HL063PA2]
          Length = 365

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGTDEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D     L   V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|289425456|ref|ZP_06427233.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|289154434|gb|EFD03122.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes SK187]
 gi|313764084|gb|EFS35448.1| D-ala D-ala ligase [Propionibacterium acnes HL013PA1]
 gi|313792389|gb|EFS40484.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA1]
 gi|313801475|gb|EFS42724.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA2]
 gi|313816433|gb|EFS54147.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA1]
 gi|313838238|gb|EFS75952.1| D-ala D-ala ligase [Propionibacterium acnes HL086PA1]
 gi|314914945|gb|EFS78776.1| D-ala D-ala ligase [Propionibacterium acnes HL005PA4]
 gi|314917830|gb|EFS81661.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA1]
 gi|314919720|gb|EFS83551.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA3]
 gi|314930037|gb|EFS93868.1| D-ala D-ala ligase [Propionibacterium acnes HL067PA1]
 gi|314956384|gb|EFT00696.1| D-ala D-ala ligase [Propionibacterium acnes HL027PA1]
 gi|314957256|gb|EFT01359.1| D-ala D-ala ligase [Propionibacterium acnes HL002PA1]
 gi|314963173|gb|EFT07273.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA1]
 gi|314967705|gb|EFT11804.1| D-ala D-ala ligase [Propionibacterium acnes HL037PA1]
 gi|315078236|gb|EFT50279.1| D-ala D-ala ligase [Propionibacterium acnes HL053PA2]
 gi|315098176|gb|EFT70152.1| D-ala D-ala ligase [Propionibacterium acnes HL059PA2]
 gi|315101671|gb|EFT73647.1| D-ala D-ala ligase [Propionibacterium acnes HL046PA1]
 gi|315109490|gb|EFT81466.1| D-ala D-ala ligase [Propionibacterium acnes HL030PA2]
 gi|327452374|gb|EGE99028.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA3]
 gi|327452749|gb|EGE99403.1| D-ala D-ala ligase [Propionibacterium acnes HL083PA2]
 gi|327453502|gb|EGF00157.1| D-ala D-ala ligase [Propionibacterium acnes HL092PA1]
 gi|328752616|gb|EGF66232.1| D-ala D-ala ligase [Propionibacterium acnes HL025PA2]
 gi|328753831|gb|EGF67447.1| D-ala D-ala ligase [Propionibacterium acnes HL087PA1]
          Length = 365

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 88/355 (24%), Positives = 142/355 (40%), Gaps = 62/355 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG+SSE  +S  S     +A++   F VS + +      V               
Sbjct: 6   VAVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPEGIWVRYGADEILALPGTGQ 65

Query: 46  ------------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIP 78
                                         D   + F VLHG FGEDG +Q +LE+  + 
Sbjct: 66  LPTVEVGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVI 130
           Y   G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +
Sbjct: 126 YVGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+        
Sbjct: 186 KPARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAP 243

Query: 191 EIAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             +VP          +    + +            A +     + VQ++A  A Q +GC 
Sbjct: 244 RASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDATRRRVQKVAIKAFQVLGCE 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D     L   V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 304 GLARIDTFVT-LDGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|169334858|ref|ZP_02862051.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
 gi|169257596|gb|EDS71562.1| hypothetical protein ANASTE_01264 [Anaerofustis stercorihominis DSM
           17244]
          Length = 351

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/340 (26%), Positives = 146/340 (42%), Gaps = 49/340 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           VL GG S E +VSL S  +  +++    + +  I V RS    L                
Sbjct: 14  VLFGGNSPEYDVSLKSAYSVINSINKDLYDIKLIGVSRSGDFYLYEGDIEKIRNDTWHLD 73

Query: 49  ---------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      +  D AF +LHG  GEDG +Q +LEL  IP   
Sbjct: 74  KNCYDALISGNTSEHGIVVFKNDELIIIHIDAAFPILHGKNGEDGTIQGLLELGGIPIIG 133

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSS 138
            G+L+SAL MDK R+ ++V S G+ V  S+          +    +  P  +KPLK GSS
Sbjct: 134 CGVLSSALCMDKYRAHKLVESMGIKVPKSVLINKSINDFSNHIEYLGFPIFVKPLKAGSS 193

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPK 196
            GI  ++  + +   + ++    + D++++E+ +DG E+ C V       +   +     
Sbjct: 194 FGITKVEDKKDLFKAVDKAF--EYDDKVVLEENIDGFEVGCAVLGNEKPIIGEVDEIELS 251

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
             F+ Y  KY+   S   +PA+I  +  K ++  A   ++ + C+  +R D       R 
Sbjct: 252 KGFFDYVEKYNLKTSKIHMPARITEENAKVIKETALKIYKILDCKDFARIDMFIT-KDRD 310

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           + + E+N  PG T  S FP M    G  F E++  ++  A
Sbjct: 311 IVFNEVNTIPGFTAHSRFPNMLKGIGMDFDEIVNKIISLA 350


>gi|94990738|ref|YP_598838.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS10270]
 gi|166198508|sp|Q1JG50|DDL_STRPD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|94544246|gb|ABF34294.1| D-alanine--D-alanine ligase [Streptococcus pyogenes MGAS10270]
          Length = 348

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 89/333 (26%), Positives = 153/333 (45%), Gaps = 41/333 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR--------------------- 40
            +L GG S+EREVS+ S ++   A+    F V    + +                     
Sbjct: 7   VLLYGGRSAEREVSVLSAESVMRAVNYDKFLVKTYFITQMGQFIKTQQFSEKPSESERLM 66

Query: 41  --SVGLVLAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                 +   +KP        + F VLHG  GEDG +Q  LE+L +PY  + +++S+++M
Sbjct: 67  TNETIELTQKIKPSDIYEEGAVVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+P     +          L      ++ P  +KP   GSS+GI   +
Sbjct: 127 DKITTKRVLESIGIPQVAYTVYIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQ 186

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYE 203
               +   +  +    +  ++LIEQ V   E+  G++G+  +  T     +   DFY Y+
Sbjct: 187 TKVELRKAIQLAL--TYDSRVLIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQ 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +   I  E++  A +A +A+G  G+SR DF       +V+  E+N
Sbjct: 245 AKYVDNKITMAIPADVDQSIVTEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELN 303

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 304 TMPGFTQWSMYPLLWENMGLAYPDLIEVLVTLA 336


>gi|300726251|ref|ZP_07059704.1| D-ala D-ala ligase [Prevotella bryantii B14]
 gi|299776448|gb|EFI73005.1| D-ala D-ala ligase [Prevotella bryantii B14]
          Length = 331

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + V  +D+                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGEGLYSFFDKEKYNVYIVDIKGLSWNVNFDNGETAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +K D A+  +HG  GE+G +Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFMRDGKVIKFDYAYITIHGQPGENGPLQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+L+ R     +  I      P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVNVADSVLIRRDEEFDEEAIAARLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +       + ++E ++DGIE++ G+   A   V   A        +       +     +
Sbjct: 188 AFMEC--SEAMVEGFMDGIEISQGIYKTADKTVVFPATEVVTNNEFFDYNAKYNGQVKEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271
            PA++  +  ++V       +  +   GI R D++       + K+  LEIN  PGMT  
Sbjct: 246 TPARLSPETAEKVAAETSRIYDILHANGIIRIDYIISKDADGNDKINMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +++L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|262384160|ref|ZP_06077296.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
 gi|262295058|gb|EEY82990.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_33B]
          Length = 330

 Score =  150 bits (378), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE  +SL S     S ++   + +    V R    V+              
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     G ++++E ++DG E+TCG       +V            +       +     +
Sbjct: 185 AF--GEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S  
Sbjct: 243 TPARISTELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+    AG   ++++  ++ED    R
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|224534249|ref|ZP_03674827.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
 gi|224514351|gb|EEF84667.1| D-alanine--D-alanine ligase [Borrelia spielmanii A14S]
          Length = 361

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 159/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ S    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCSGIWYLLDSVSDPPNPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGLGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +                 +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQHDYFLDKEEVKKNVKESLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIEEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GVIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|255531745|ref|YP_003092117.1| D-alanyl-alanine synthetase A [Pedobacter heparinus DSM 2366]
 gi|255344729|gb|ACU04055.1| D-alanine/D-alanine ligase [Pedobacter heparinus DSM 2366]
          Length = 328

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 142/323 (43%), Gaps = 30/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A+L GG + E  VS+ S    A  L+   F V +I                 +VDR+  
Sbjct: 5   IALLTGGTTGEWVVSVKSAATIAQNLDADKFDVYKIMLTQQGWFYEPADSVKIEVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +      +K +  F  +HG+ GEDG +Q   ++L IPYT    L SA++M+K  +K +V
Sbjct: 65  SINLKGKKVKFEGVFIAIHGSPGEDGKLQGYFDMLGIPYTTCDALTSAVTMNKGYTKAIV 124

Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                 +                  +  +  PY +KP  GGSS+G+  +     +   + 
Sbjct: 125 DGIAELNIAKSAQIFKGTPYSLEQIKKTLKVPYFVKPNNGGSSIGMSKVNHPDDLQAAID 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           ++       Q+LIE+++ G E T     + G+ ++          +F+ +E KY+   +T
Sbjct: 185 RAF--KEDSQILIEEFISGREFTIGVVKLDGEITVLPATEVETAKEFFDFEAKYTPGVAT 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              PA I  +  + V ++    +  + CRG+ R DF+ +      +++EIN  PG T  S
Sbjct: 243 ETTPAPIRKETLERVTQIVKNVYLKLNCRGVVRIDFILNGDEGDFYFIEINTIPGQTATS 302

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+  A AG    +    ++ +
Sbjct: 303 FIPQQVAAAGMKLNDFYTKLIRE 325


>gi|167969998|ref|ZP_02552275.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
          Length = 358

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 150/352 (42%), Gaps = 65/352 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E 
Sbjct: 300 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIET 349


>gi|15610118|ref|NP_217497.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Rv]
 gi|148662831|ref|YP_001284354.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis H37Ra]
 gi|306777274|ref|ZP_07415611.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|306973392|ref|ZP_07486053.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|307081100|ref|ZP_07490270.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|307085704|ref|ZP_07494817.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
 gi|6919857|sp|P95114|DDL_MYCTU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|166198493|sp|A5U6Z2|DDL_MYCTA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|290790328|pdb|3LWB|A Chain A, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|290790329|pdb|3LWB|B Chain B, Crystal Structure Of Apo D-Alanine:d-Alanine Ligase (Ddl)
           From Mycobacterium Tuberculosis
 gi|1694850|emb|CAB05431.1| PROBABLE D-ALANINE--D-ALANINE LIGASE DDLA (D-ALANYLALANINE
           SYNTHETASE) (D-ALA-D-ALA LIGASE) [Mycobacterium
           tuberculosis H37Rv]
 gi|148506983|gb|ABQ74792.1| D-alanylalanine synthetase [Mycobacterium tuberculosis H37Ra]
 gi|308214324|gb|EFO73723.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu001]
 gi|308357192|gb|EFP46043.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu010]
 gi|308361146|gb|EFP49997.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu011]
 gi|308364739|gb|EFP53590.1| D-alanine-D-alanine ligase ddlA [Mycobacterium tuberculosis
           SUMu012]
          Length = 373

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 91/352 (25%), Positives = 150/352 (42%), Gaps = 65/352 (18%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 17  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 76

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 77  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 137 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  + ++    H  ++++E  + G EL CGV+           
Sbjct: 197 RGGSSIGVSRVSSWDQLPAAVARAR--RHDPKVIVEAAISGRELECGVLEMPDGTLEAST 254

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 255 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 314

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +R DF            EIN  PG T +S++P M A +G  +  LL  M+E 
Sbjct: 315 ARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWAASGVDYPTLLATMIET 364


>gi|320528246|ref|ZP_08029409.1| D-ala D-ala ligase [Solobacterium moorei F0204]
 gi|320131371|gb|EFW23938.1| D-ala D-ala ligase [Solobacterium moorei F0204]
          Length = 401

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 85/366 (23%), Positives = 141/366 (38%), Gaps = 74/366 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLK--- 50
           +AV  GG S E EVS+ S      AL+   + V  + V +        +   +++ K   
Sbjct: 5   IAVFFGGESVEHEVSIISAHQAIEALDKNKYNVIPVYVSKERKLYVSDLLKDISNYKDLK 64

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+A  V+HG  GEDG +Q   E+L
Sbjct: 65  HLISQCTQVSITSEDNRVVIRPVKPSLFGPKELGTIDVAIPVMHGTNGEDGTIQGFFEML 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPP 127
           ++PY    +  +A+  DK+  K V++   +P+     V    MD+         H +  P
Sbjct: 125 KVPYAGCDLYGAAIGQDKVLQKNVLNDNNLPITNWFWVYGSEMDTHQSEILDKVHRLIYP 184

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--------DQLLIEQYVDGIELTC 179
            +IKP + GSS+GI +   D+       ++  ++              I   V G   +C
Sbjct: 185 VIIKPARTGSSVGISIAHNDEEYLACFDEARQYDEKIITEKVVKPMREINCSVVGDSYSC 244

Query: 180 GVMGDASLDVTEIAVPKSDFYSY---------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                  +         S    Y         E      ++  ++PA +  +  + +Q+L
Sbjct: 245 VASVLEEVSSVSQDELLSFSDKYLGGSKSAKSEGSKGMASTARIVPAPLTDEQTRLIQQL 304

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G+ R DFL D  ++KV+  EIN  PG    S+   +   AG SF EL+ 
Sbjct: 305 AKETFRVLGTSGVCRIDFLMDADTKKVYVNEINTIPG----SLAFYLWKAAGVSFSELMD 360

Query: 291 WMVEDA 296
            +VE A
Sbjct: 361 KLVELA 366


>gi|257065949|ref|YP_003152205.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
 gi|256797829|gb|ACV28484.1| D-alanine/D-alanine ligase [Anaerococcus prevotii DSM 20548]
          Length = 345

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 136/336 (40%), Gaps = 46/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG SSE ++SL S    +  L +  +K+  + +++      A  K D          
Sbjct: 6   ILCGGPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSEAFDKIDTDNEFDLVKE 65

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   +    +HG +GEDG +QA+L+++ I Y  +G+L+SA
Sbjct: 66  VKENKTKSIADFLTCLSKEDYSKTIVIPAVHGTYGEDGTIQALLDVIGIAYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ S  +     +     +  N+              I  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKNKLSQAKYLYTNKDGFDSDFADRCIEEIGLPLIVKPSANGSSVGVS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200
            +     +        +  +  ++L+E+ ++G E         +  +      +    F 
Sbjct: 186 KVTNKNELLAA--GDEALKYDKKVLVEELIEGQEIEFAVVGYMNPDVSEPAAYISDHTFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY S ++   LP  +  +  +E Q     A++A GC G +R D          +  
Sbjct: 244 DYDAKYFSKSTKETLPYILEKEKLEEAQEFVKRAYEACGCEGFARVDIFL-GKDNNFYVN 302

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +       SF E+L  +++D
Sbjct: 303 EINTFPGFTPSSFFARLCELMYNESFSEVLDRLIKD 338


>gi|256851798|ref|ZP_05557186.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260661940|ref|ZP_05862850.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|282934938|ref|ZP_06340168.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297205420|ref|ZP_06922816.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
 gi|256615756|gb|EEU20945.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 27-2-CHN]
 gi|260547409|gb|EEX23389.1| D-alanine-D-alanine ligase [Lactobacillus jensenii 115-3-CHN]
 gi|281301031|gb|EFA93345.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|297149998|gb|EFH30295.1| D-alanine--D-alanine ligase [Lactobacillus jensenii JV-V16]
          Length = 361

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 160/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLK--------- 50
           + ++ GG SSE EVS+ SG    +A++   + V  I + +      L   K         
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + ++            +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYNYVSKKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +K +      L ++    + D++L+E+ +DG E+   V+G+  + V+ +    + 
Sbjct: 187 VGISHVKSEADYLPALAEAF--KYDDKVLVEEAIDGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  + +      +PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V + E+N  PG T +S++P++   AG  + +L+  ++E A
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346


>gi|295106320|emb|CBL03863.1| D-alanine--D-alanine ligase [Gordonibacter pamelaeae 7-10-1-b]
          Length = 330

 Score =  150 bits (378), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 87/325 (26%), Positives = 144/325 (44%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S ERE SL+SGK   +ALE+AG KV  +D    +   L   +PD+ ++ LHG
Sbjct: 5   VAVLMGGASFEREFSLASGKNVCAALEEAGHKVVPLDTTADLVPTLRTERPDVCYSALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG---------------- 104
             GEDG +Q++LE L+IP+  S       + +K      +++                  
Sbjct: 65  KHGEDGTIQSLLEFLDIPFVGSPSHVCHRTWNKDSMHYELATYRAITGDAPIASWPQGIY 124

Query: 105 ----VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                            +  + +   P  +KP  GGS++G+  +     +   +    + 
Sbjct: 125 LARDAFKDMGAATALDLVQERVIGGYPVAVKPAHGGSAMGVHRVDSVDELGEAI--LDAL 182

Query: 161 NHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +  + ++IEQ+V+G+E+         DA        VPK  F+  E +       ++ P 
Sbjct: 183 SFDEAVVIEQWVEGVEMAVSVLGTGWDAYALPPVEIVPKQGFFGTEARMEPGAVQYIAPV 242

Query: 218 KI---------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +             I  E++R A   ++A   R ++R D ++D    +VF  E+NV PGM
Sbjct: 243 RPASLSDDEGDAQAIRAEIERAALEVYRAYNARDLARVDLIWDGAQARVF--EVNVSPGM 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
              S+FP     AG S   +L  +V
Sbjct: 301 AERSLFPAACEAAGLSLSSVLNELV 325


>gi|298376940|ref|ZP_06986894.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|301311072|ref|ZP_07217001.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
 gi|298265924|gb|EFI07583.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_19]
 gi|300831135|gb|EFK61776.1| D-alanine--D-alanine ligase [Bacteroides sp. 20_3]
          Length = 330

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 78/326 (23%), Positives = 142/326 (43%), Gaps = 29/326 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++ GG SSE  +SL S     S ++   + +    V R    V+              
Sbjct: 5   IAIVAGGDSSEIVISLKSADGIYSFIDKDKYNLYIAIVKRDEWAVILPSGEHTPIDKNDF 64

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GEDG +Q   +++ +PY+  G+L SAL+ +K      +
Sbjct: 65  SFKENGVTRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMLVSALTFNKYVCNHYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 125 KDFGVKIAASIHLFKGETITDEEVVTRLGLPIFVKPNDGGSSFGVTKVKELSAIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     G ++++E ++DG E+TCG       +V            +       +     +
Sbjct: 185 AF--GEGREVILESFIDGTEVTCGCYKVEGKEVVFPLTEVVTDNEFFDFDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + +QR     +  +G +G+ R D++  P   +   LEIN  PGMT  S  
Sbjct: 243 TPARISAELTELIQRKTSRIYDILGAKGLIRVDYII-PADGEPVLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+    AG   ++++  ++ED    R
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEDELKNR 327


>gi|281420976|ref|ZP_06251975.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
 gi|254966986|gb|ACT97527.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967007|gb|ACT97539.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967009|gb|ACT97540.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967011|gb|ACT97541.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|281404894|gb|EFB35574.1| D-alanine--D-alanine ligase [Prevotella copri DSM 18205]
          Length = 331

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SI           +    I  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      ++++IE ++DG E++ G+   A   V   A        +       +     +
Sbjct: 188 AFM--ESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEVVTTNEFFDYDAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271
            PA++  +  +EV +     +  +   GI R D++         KV  LEIN  PGMT  
Sbjct: 246 TPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +++L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|254967100|gb|ACT97592.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 334

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + V  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMRSAQGLYSFFDKERYNVYIVDVKGLDWNVHFEDGTTAPIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             L + K    D A+  +HG  GE+G++Q   ELL IPY+ SG+L  A++ DK      +
Sbjct: 68  SFLVNGKLVVFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPV------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              GV V                 +    I  P  +KP   GSS GI  +K    +   L
Sbjct: 128 RGFGVNVADSLLLRRGEEDKYSEAEIASRIGWPCFVKPAADGSSFGISKVKNADQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
             +      D+++IE+Y+ G E++ G     +  V   A        +       +    
Sbjct: 188 RVAFM--ESDEVMIERYLKGTEISVGCYKTKNKSVVFPATEVVTSNEFFDYDAKYNGQVE 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMT 269
            + PA++  +  + V       +  + C GI R D++          +  LEIN  PGMT
Sbjct: 246 EITPARLNPETAERVAEETSKIYDILHCNGIIRIDYIISQDQNGRDVINMLEINSTPGMT 305

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG   +++L  ++E+
Sbjct: 306 ATSFIPQQVRAAGLDIKDVLTDIIEN 331


>gi|300774222|ref|ZP_07084089.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
 gi|300758901|gb|EFK55730.1| D-alanine--D-alanine ligase [Sphingobacterium spiritivorum ATCC
           33861]
          Length = 334

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/327 (25%), Positives = 146/327 (44%), Gaps = 31/327 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A+L GG + E EVS  S     S L+   + V  I + +                    
Sbjct: 5   IALLTGGYTGEAEVSFKSSAFVYSQLDHNKYDVYLITITKDHWFHVNEQGVKFTVNRENF 64

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + L    ++ DLAF ++HG  GEDG +Q   ++L+IPYT    L S+L+M+K  +K V+
Sbjct: 65  TLPLDHETIRFDLAFILIHGTPGEDGRLQGYFDMLDIPYTSCDALTSSLTMNKGYTKAVL 124

Query: 101 SSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +                         Q  +S PY +KP  GGSS+G+  +K ++ +   +
Sbjct: 125 AGIPDLHMAKSVLLFEAQRAEAVATVQANLSLPYFVKPNAGGSSIGMTKVKTNEELAEAI 184

Query: 155 LQSSSWNH-GDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSL 209
            ++    + G Q+++E++V G E + G+  +      +          +F+ YE KY+  
Sbjct: 185 DKAFDAENTGKQVIVEEFVTGREFSQGIYRNVEGLLTVLPATEVKTTREFFDYEAKYTPG 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + PA +  +    +  L    +  + C+G+ R DF  +  + K +++EIN  PG T
Sbjct: 245 LTEEITPADLTEEQQSRIAALLKEVYIRLNCKGMVRIDFFLENGTDKFYFIEINTIPGQT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S  P+    AG    +    ++E A
Sbjct: 305 AQSFIPQQVRAAGMKETDFYGDLIEVA 331


>gi|218265032|ref|ZP_03478644.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221637|gb|EEC94287.1| hypothetical protein PRABACTJOHN_04354 [Parabacteroides johnsonii
           DSM 18315]
          Length = 326

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-------------------QID-VDR 40
           +A++ GG SSE  +SL S +   S L+   + V                     ID  D 
Sbjct: 6   IAIVAGGDSSEIVISLKSAEGIFSFLDKDKYNVYIAIIKRDEWAVKLPGGEHTPIDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GEDG +Q   +++ +PY+  G+  SAL+ +K      +
Sbjct: 66  SFRENGEVRHFDFAYITIHGTPGEDGRLQGYFDMIGMPYSSCGMFVSALTFNKFACNHYL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  SI + +    +       +  P  +KP  GGSS G+  +K+  +I   + +
Sbjct: 126 KGFGVDIACSIHLFKGQTVTDEEVVSRLGLPVFVKPNDGGSSFGVTKVKEASAIQPAIAK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +   + G +++IE ++DG E+TCG    A  +V            +       +     +
Sbjct: 186 AF--SEGREVVIESFIDGTEVTCGCYKTADKEVVFPLTEVVTDNEFFDFDAKYNGQVQEI 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++ ++VQR     +  +G +G+ R D++  P   +   LE+N  PGMT  S  
Sbjct: 244 TPARVSAELTEKVQRETSRIYDILGAKGLIRVDYII-PAGGEPKLLEVNTTPGMTATSFI 302

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 303 PQQVRAAGLEMKDVMTDIIEN 323


>gi|118589872|ref|ZP_01547276.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
 gi|118437369|gb|EAV44006.1| D-alanine-D-alanine ligase protein [Stappia aggregata IAM 12614]
          Length = 358

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/341 (23%), Positives = 142/341 (41%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S+E EVS+ S      AL+ + +    I V      +++  +          
Sbjct: 10  VAILFGGRSAEHEVSVLSATNVMHALDPSKYDAVPIYVTLEGQWLVSRFENGKLTRPSTG 69

Query: 52  ----------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D  F VLHG  GEDG VQ + E+  +P    G
Sbjct: 70  TEICLVPGGMGRVVALDEGGRSHDLANLDALFPVLHGLHGEDGAVQGLAEVARVPLVGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K+++   G+P   SI ++          +  +  P  IKP + GSS+
Sbjct: 130 IAGSANALDKDLAKRLLIEAGLPAARSITIHPHEVPAFETLKKDLGLPIFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA-------SLDVTEI 192
           G+  +         + +     H ++LL E++V G E+   V+ +               
Sbjct: 190 GVSKVMTAADFKAAVQEGF--KHDNKLLAEEFVLGREIEFAVLEECDGTLFVSRPGEIVP 247

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +           +   +PA++P ++   ++ LA  A +A+GC G++R DF    
Sbjct: 248 AESHGFYTYDAKYVDEDGAALKVPAELPGEVENRMKDLAAKAFRALGCDGMARVDFFLT- 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               V   E+N  PG T +S++ +  A +G ++ E++  ++
Sbjct: 307 QDMNVLINELNTIPGFTNISMYSKAMAASGINYPEIIDRLI 347


>gi|149276235|ref|ZP_01882379.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
 gi|149232755|gb|EDM38130.1| D-alanylalanine synthetase [Pedobacter sp. BAL39]
          Length = 335

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 79/323 (24%), Positives = 141/323 (43%), Gaps = 30/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDRSVG 43
           +A+L GG + E  +S+ S    A  L+   F+V +I                 +VDR+  
Sbjct: 12  IALLTGGTTGEWVISVKSAATIAHNLDADKFEVYKIMLTQQGWFYEPADAVKIEVDRNDF 71

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  + K    D  F  +HG+ GEDG +Q   ++L +PYT    L S+++M+K  +K +V
Sbjct: 72  SLTINGKKIIFDGVFIAIHGSPGEDGKLQGYFDMLNLPYTTCNALTSSVTMNKGYTKAIV 131

Query: 101 SSCGVPV-----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +                +       ++ +  PY +KP  GGSS+G+  +     +   + 
Sbjct: 132 NGIPNLHVAKSAQIFKNIPYDIDQLKNDLKIPYFVKPNNGGSSIGMSKVTHAADLQEAIE 191

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           ++      DQ+LIE+++ G E T GV+                  +F+ +E KY+   +T
Sbjct: 192 KAF--KEDDQILIEEFISGREFTVGVVKIDGEITVLPATEVETAKEFFDFEAKYTPGVAT 249

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              PA I  +    V ++A   +  + C G+ R DF+        +++EIN  PG T  S
Sbjct: 250 ETTPAPIRAETKARVGQIAKDVYLKLNCSGVVRIDFILTEDEGDFYFIEINTIPGQTATS 309

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
             P+  A  G    +    ++ +
Sbjct: 310 FIPQQVAAMGMKLNDFYTKLIRE 332


>gi|238854349|ref|ZP_04644691.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|260665042|ref|ZP_05865892.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|282931753|ref|ZP_06337238.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
 gi|313472963|ref|ZP_07813450.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|238832971|gb|EEQ25266.1| vancomycin/teicoplanin A-type resistance protein VanA
           [Lactobacillus jensenii 269-3]
 gi|239528848|gb|EEQ67849.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 1153]
 gi|260561096|gb|EEX27070.1| D-alanine-D-alanine ligase [Lactobacillus jensenii SJ-7A-US]
 gi|281304060|gb|EFA96177.1| D-alanine--D-alanine ligase [Lactobacillus jensenii 208-1]
          Length = 361

 Score =  150 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 159/342 (46%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-LAHLK--------- 50
           + ++ GG SSE EVS+ SG    +A++   + V  I + +      L   K         
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKEKYDVYPIWLTKDNYFASLEDSKKVWDDPTYT 66

Query: 51  ---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q    +L+ P+    +LA+A+
Sbjct: 67  IKNPHKLANVSNFEQLANLPEMDVYFPIVHGNIGEDGVIQGFFRMLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   + + RF  + ++            +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRAGVPVADWVAIKRFEYNDKNNSKLDYKYVSEKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +K +      L ++    + D++L+E+ + G E+   V+G+  + V+ +    + 
Sbjct: 187 VGITHVKSESDYLPALAEAF--KYDDKVLVEEAITGTEVETAVLGNDDIIVSGVGQIINA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  + +      +PA +P +I ++V+  A   ++A  C G++R D +     
Sbjct: 245 KGSFYSYKNKYDDSSTTTLQIPADLPAEIVEKVRSNAEKIYRATECSGMARIDSMLRTSD 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V + E+N  PG T +S++P++   AG  + +L+  ++E A
Sbjct: 305 HEVIFNELNALPGFTNISMYPKLFEEAGIKYTDLISRLIELA 346


>gi|300775213|ref|ZP_07085075.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
 gi|300505953|gb|EFK37089.1| D-alanine--D-alanine ligase [Chryseobacterium gleum ATCC 35910]
          Length = 329

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 94/324 (29%), Positives = 158/324 (48%), Gaps = 33/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+MGG S E  VSL SG+    +L+   + V ++ V +     L              
Sbjct: 8   VAVVMGGYSDEYVVSLKSGQLIYDSLDRNLYDVYKVVVLKDEWYFLGENDKKYAINRGDF 67

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    L+ D+ FN++HG  GE+G++QA  + +   YT  G   SAL+ +K  +  V
Sbjct: 68  SVTLDNGETLQFDVCFNIIHGTPGENGILQAYWDAIGQKYTGCGFYQSALTFNKKDTLAV 127

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +S  G+P   SI + +    +   I      P  +KP + GSSLGI  +K+   +     
Sbjct: 128 LSKYGIPSAKSIYLRKGEDINVDEIVSELKLPLFVKPNQSGSSLGISKVKEKSELIAA-- 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNST 212
              ++   D++LIE +++G+E++ GV+      +       VP ++F+ YE K     S 
Sbjct: 186 TEIAFKEDDEILIESFLNGMEVSVGVIDFKGETIVLGITEIVPTNEFFDYEAK-YEGASE 244

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + PA+I  +  K V+ +A  A+ ++G  G SRS+++   +    + LE+N  PG +P S
Sbjct: 245 EITPARIDEETTKRVEEIAKRAYNSLGMSGFSRSEYIL--MDGIPYMLEMNTNPGFSPAS 302

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I P+ A + G S  +L    VE A
Sbjct: 303 ILPQQAKHYGISIMDLCGNEVEKA 326


>gi|256381067|ref|YP_003104727.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255925370|gb|ACU40881.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 314

 Score =  150 bits (377), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 98/309 (31%), Positives = 151/309 (48%), Gaps = 16/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+   +AL  AG  V + D D  +   L   +PD     LHG
Sbjct: 6   VAVLSGGLSHEREVSLRSGRRLTAALRSAGLVVEEWDADGQLLSRLKEHRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GE+G VQ ILEL  +P+  +   A   + DK  +K  +S  G+      ++   T   
Sbjct: 66  GEGENGSVQTILELAGVPFVGADSRACRRAWDKPTAKGELSRAGLATPEWAVLPHATFRE 125

Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V++    +P  +       +GD +L E+
Sbjct: 126 LGARPVLDSMIDRLGLPLMLKPAQGGSALGAQVVRDAADLPSAM--VGCLAYGDTVLAER 183

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +V+G+E+   V+              VP+S  Y Y  +Y++  +    PA++     K V
Sbjct: 184 FVEGVEVAVAVVDGPDGPHALPPVEIVPESGVYDYTSRYTAGLTDFHAPARLDEATAKAV 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA  AH+ +G R +SR+D + +P    V +LE+NV PG+T  S  P     AG S  E
Sbjct: 244 GELAVSAHRLLGLRDVSRTDAIVEP-DGTVHFLEVNVSPGLTETSTLPMAVEAAGTSLGE 302

Query: 288 LLLWMVEDA 296
           +   ++E A
Sbjct: 303 IYAALIERA 311


>gi|315652856|ref|ZP_07905829.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
 gi|315484887|gb|EFU75296.1| D-alanine-D-alanine ligase [Eubacterium saburreum DSM 3986]
          Length = 349

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/349 (24%), Positives = 145/349 (41%), Gaps = 54/349 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG SSE E+S+ S    +  ++   +++  + + +    +                
Sbjct: 5   VIIFGGRSSEHEISVISATNVSKQVDTDKYELILVGITKEGKWLKVDSISSMEDGSWLNS 64

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    +  D+ F VLHG FGEDG VQ +LEL +IPY   G
Sbjct: 65  KTSAYILPDATKKCIMVETGGEYKEVHVDVVFPVLHGLFGEDGTVQGLLELAKIPYVGCG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPPYVIKPLK 134
           +LASA+ MDK+ +K VV   G+                ++      +     P  IKP  
Sbjct: 125 VLASAVGMDKLYTKLVVDKLGIRQAAYEAVLDYEVRENLSDKIEKIEGRFDYPVFIKPSN 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TE 191
            GSS G+      + +   +L++    H  ++L+E+ + G E+ CGV+G           
Sbjct: 185 AGSSRGVSKALDREELKKGILEAL--KHDRKVLVEETIVGHEVECGVLGRPGDVTASGVG 242

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                + FY Y+ KY   + T +        + +++   A     A+   G+SR DF   
Sbjct: 243 EIKSAATFYDYDAKYKLDSLTLLDSKLPDG-VREKLPEYAKKIFTALDGFGLSRVDFF-A 300

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               ++ + EIN  PG T +S++P +   AG   ++L+  ++E A   R
Sbjct: 301 REDGEIVFNEINTMPGFTAISMYPMLFEAAGIGKKDLIDRLIELAFERR 349


>gi|221217556|ref|ZP_03589026.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224534092|ref|ZP_03674675.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225548522|ref|ZP_03769570.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
 gi|225549817|ref|ZP_03770781.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|221192619|gb|EEE18836.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 72a]
 gi|224512791|gb|EEF83159.1| D-alanine--D-alanine ligase [Borrelia burgdorferi CA-11.2a]
 gi|225369625|gb|EEG99074.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 118a]
 gi|225370785|gb|EEH00220.1| D-alanine--D-alanine ligase [Borrelia burgdorferi 94a]
          Length = 361

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|170781258|ref|YP_001709590.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155826|emb|CAQ00951.1| D-alanine--D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 335

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 99/328 (30%), Positives = 154/328 (46%), Gaps = 41/328 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           ++VL GG S ER+VS++S      AL   G +V  +D         A  +          
Sbjct: 3   ISVLFGGESEERDVSIASAAQVVPALRQLGHEVVAVDTAHGALDAAAEARILTPDVGLHP 62

Query: 52  ---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      DL F  LHG  GEDG +QA+LEL  IP+T SG 
Sbjct: 63  PTSAELATASAGGSGAVLRLPADLRDSDLVFLALHGGSGEDGRLQALLELAGIPFTGSGS 122

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L SAL+MDK  +K ++ + GV     ++        +  +  P V+KP   GS++G+ V+
Sbjct: 123 LGSALAMDKDVAKTLLRAGGVRTPDWLID-PEPGAVEAALGFPVVVKPTGQGSTVGLSVV 181

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +P  L  ++       +++E++V G ELT GV+   +L V EI VP  + ++Y  
Sbjct: 182 RAAADLPAALELAARH---GTVMVERFVRGRELTVGVLDGEALAVGEIGVPVDEAFTYAA 238

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY +       PA +P ++ +E +  A  AH+ +   G SRSDF  D     ++ +E N 
Sbjct: 239 KYQAGAIAETFPADLPSEVAEEARAAALAAHRILRLDGYSRSDFRLDDA-GILWIIEANS 297

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            PG+T  S+ P+ AA  G  + EL   +
Sbjct: 298 LPGLTATSLLPQSAAAVGIGYAELCERI 325


>gi|15594545|ref|NP_212334.1| D-alanyl-alanine synthetase A [Borrelia burgdorferi B31]
 gi|3913421|sp|O51218|DDL_BORBU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2688093|gb|AAC66589.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi B31]
          Length = 356

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 2   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 61

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 62  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 121

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              + ++  P ++KP   GSS+G
Sbjct: 122 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 181

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 182 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 239

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 240 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLTYKNLELRGMARVDFFVEKKS 299

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 300 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 341


>gi|27378516|ref|NP_770045.1| D-alanyl-alanine synthetase A [Bradyrhizobium japonicum USDA 110]
 gi|39931121|sp|Q89PS5|DDLB_BRAJA RecName: Full=D-alanine--D-alanine ligase B; AltName:
           Full=D-Ala-D-Ala ligase B; AltName: Full=D-alanylalanine
           synthetase B
 gi|27351664|dbj|BAC48670.1| D-alanine--D-alanine ligase [Bradyrhizobium japonicum USDA 110]
          Length = 376

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 154/351 (43%), Gaps = 59/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E EVS +S      AL    + V  I + R                    
Sbjct: 17  VGLLFGGRSAEHEVSRASAANILRALNSDRYDVYLIGISRDGRWFACDSGNGAGTGSTAL 76

Query: 46  -LAHLKP--------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
            ++   P                          D+AF +LHG  GEDG VQ  LEL ++ 
Sbjct: 77  TISDEAPEIGLVPGGRGRLVHCDGPTGSDAGSIDVAFPILHGPNGEDGTVQGALELADVS 136

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPL 133
           +  S +  SA++MDK  SK+++   G+PV P +     +          L +P   +KP 
Sbjct: 137 FVGSSVTGSAVAMDKEVSKRLMRDAGLPVVPFLTTTASSRIEYAAAVAALGTPDLFVKPA 196

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVT-- 190
             GSS+G+   + ++        + ++ +  ++L+EQ ++G  E+ C V+ +++ D+   
Sbjct: 197 NLGSSVGVSRARSEEEF--AASCALAFRYDRKILVEQALNGAREIECSVLEESTGDIRAS 254

Query: 191 ----EIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                +   +  FYSY+ KY   +     +PA +PL   + +Q LA      + C G++R
Sbjct: 255 GLGEIVRASEHGFYSYQAKYIDADGAALHIPADLPLLQARRLQELAVEVFNVLCCEGMAR 314

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF       +VF  E N  PG T  S++P++   +G S  +L+  ++  A
Sbjct: 315 VDFFV--QGDEVFVNEANTLPGFTSSSMYPKLWEASGLSQTDLMDKLIAHA 363


>gi|148546760|ref|YP_001266862.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510818|gb|ABQ77678.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 352

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 90/349 (25%), Positives = 153/349 (43%), Gaps = 52/349 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG SSE  V+L S     +AL   G +V  + +DR                    
Sbjct: 6   IALVFGGRSSEHSVALRSAATIHAALMALGHRVHCVGIDREGNWRYQGEPCQFPGAVDRS 65

Query: 46  --LAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
             L  ++P                   DL F  LHG +GEDG +Q +  +  +P   SG+
Sbjct: 66  APLISIRPGHRSLSYTTQESGTVEIGIDLLFPALHGRWGEDGTIQGLAAMCGLPCVGSGV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGI 141
           L SA++MDK  +K++V S G+ V P + +N      + +         +KP   GSS+G 
Sbjct: 126 LGSAMAMDKDVTKRMVQSAGLVVGPWLALNSMRPWEELVECLGSSTLFVKPATSGSSIG- 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS--LDVTEIAVPKSDF 199
            V +   ++      + +     ++L+E  V G E+ CGV+      +      + K + 
Sbjct: 185 -VSRVSNALEYAAAFAIAAREDTKVLVEAAVCGREIECGVLELEEGLMASVVGEIIKKEG 243

Query: 200 YSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           ++Y    +  +S       +P+ +P DI   +Q L+  A + +  +G +R DF       
Sbjct: 244 HAYYDYQAKYDSNSVTGLRVPSLLPPDIVARIQALSVQAFRCLELKGYARVDFFLTEE-G 302

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE----DASCLR 300
           ++   EIN  PG T  S++P+M   +GY   +L+  +VE     AS  R
Sbjct: 303 EIILNEINTLPGFTSASMYPKMFECSGYPPPKLVGALVEYGLSSASKER 351


>gi|227832984|ref|YP_002834691.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|262182528|ref|ZP_06041949.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
 gi|254767727|sp|C3PFZ9|DDL_CORA7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|227454000|gb|ACP32753.1| D-alanine-D-alanine ligase [Corynebacterium aurimucosum ATCC
           700975]
          Length = 356

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 92/351 (26%), Positives = 154/351 (43%), Gaps = 56/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG SSE  VS  S  A    L+   ++V  I + R       +            
Sbjct: 9   VAVVYGGRSSEHSVSCISAGAIMEHLDPEKYEVVPIGITREGTWTQGNRAGLNIVDGRLP 68

Query: 50  ------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                         + D+   VLHG +GEDG VQ + EL  IPY
Sbjct: 69  EVELHDELALSLNPATRGRIHNVTRHEHYTEVDVIVPVLHGPYGEDGTVQGLFELSGIPY 128

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGG 136
             +G+LASA+ MDK  +K+++ + G+PV P  ++          +  +  P  +KP +GG
Sbjct: 129 VGAGVLASAVGMDKEFTKKLLVAEGLPVAPQEVLTGEATLDDLQKERLGLPVFVKPARGG 188

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV-- 194
           SS+G+  +   + +   L  +      D++LIE  + G E+  GV+      +       
Sbjct: 189 SSIGVSKVSAWEDLEAALTLAY--ESDDKVLIEPEISGAEVEVGVLERPDGSLQASVPAK 246

Query: 195 ------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                  +  FY ++ KY     +  +PA +  ++  E+++ A  A +A+G  G+SR DF
Sbjct: 247 ILGTTESEEGFYDFDAKYIDEGVSAAIPAPLSEELTAELRQRAIEAFRALGASGLSRVDF 306

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                S      E+N  PG TP+S++P++ A  G  + ELL  +++ A   
Sbjct: 307 FVSDYS--YCINEVNTFPGFTPISMYPQVFAAVGVGYAELLDTLIQTALAR 355


>gi|159040582|ref|YP_001539835.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
 gi|157919417|gb|ABW00845.1| D-alanine--D-alanine ligase [Salinispora arenicola CNS-205]
          Length = 327

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 87/310 (28%), Positives = 143/310 (46%), Gaps = 16/310 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+    AL   G +    D D ++   L    PD     LHG  
Sbjct: 19  VLAGGLSYERDVSLRSGRRVLDALRAVGVEAELRDADVALLPSLVADPPDAVVIALHGAT 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG ++ +L+L  +PY      +S L+ DK  +K V+   G+P    + +         
Sbjct: 79  GEDGSLRGVLDLCNVPYVGCDARSSRLAWDKPSAKAVLREAGIPTPDWVALPHDRFSELG 138

Query: 119 ------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P ++KP +GGS LG  V++   ++P  +     + +    L+E+Y+
Sbjct: 139 AVAVLDRIVDRLGLPLMVKPAQGGSGLGAAVVRDGPALPAAM--VGCFAYDSTALVERYL 196

Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G ++   V+              VP++  Y Y  +Y++  +T   PA++  ++ + V  
Sbjct: 197 PGTDVAVSVIDLGEGPQALPAVEIVPRNGVYDYAARYTAGRTTWHTPARLDTEVAEAVAT 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH A+G R +SR D + D    +   L +NV PGMT  S+ P  A  A   F  ++
Sbjct: 257 VAVAAHTALGLRDLSRVDLIVDA-DHQPHVLGVNVAPGMTETSLLPLAAQAASLDFGRMI 315

Query: 290 LWMVEDASCL 299
             +V  A   
Sbjct: 316 GTLVSRAVAR 325


>gi|225552328|ref|ZP_03773268.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
 gi|225371326|gb|EEH00756.1| D-alanine--D-alanine ligase [Borrelia sp. SV1]
          Length = 361

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSNPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGLGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--RYDLAIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|224531899|ref|ZP_03672531.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
 gi|224511364|gb|EEF81770.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           valaisiana VS116]
          Length = 361

 Score =  149 bits (376), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S       L D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYGIYLTLLDLDKYNIYPVYIDKCTGIWYLLESVSDPPKPINID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPVVSLLPGFGIFANNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIMGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++             + ++  P +IKP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEIKRDVKEVLGYPVIIKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I V   +  I   +    S  +   ++IE++++  E+ C              E+ V   
Sbjct: 187 INVAYSENQIESFI--KESLKYDLTIVIEKFIEAREIECSVIGNEKIKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFL ++ +G RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAYLETNQLLTIKEYAFLVYKNLGLRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLIDYA 346


>gi|218249946|ref|YP_002374727.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226321518|ref|ZP_03797044.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
 gi|226729268|sp|B7J1D2|DDL_BORBZ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218165134|gb|ACK75195.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi ZS7]
 gi|226232707|gb|EEH31460.1| D-alanine--D-alanine ligase [Borrelia burgdorferi Bol26]
          Length = 361

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKKNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|195941931|ref|ZP_03087313.1| D-alanine--D-alanine ligase (ddlA) [Borrelia burgdorferi 80a]
 gi|312148040|gb|ADQ30699.1| D-alanine--D-alanine ligase [Borrelia burgdorferi JD1]
          Length = 361

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|224024579|ref|ZP_03642945.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
 gi|224017801|gb|EEF75813.1| hypothetical protein BACCOPRO_01305 [Bacteroides coprophilus DSM
           18228]
          Length = 337

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 141/321 (43%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VS+ S +   S ++   + +  +++                    D 
Sbjct: 16  IAIVAGGDSSEHGVSMKSAEGIYSFIDQQKYNLYIVELTHKSWEAILPDGTRAAIDKNDF 75

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +KPD A+  +HG  GE+G++Q   EL+ +PY+   +L SAL+  K    Q +
Sbjct: 76  SFEENGKRIKPDFAYITIHGTPGENGILQGYFELIGMPYSTCDVLVSALTFSKFLLNQYL 135

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+LV +            I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 136 KGFGIRVAESLLVKKKNGITDEQVIETIGLPCFIKPNASGSSFGVTKVKTKEQIQPALEA 195

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214
           +      D ++IE ++DGIEL  G        V            +           T +
Sbjct: 196 AF--KESDDVMIEAFMDGIELANGCYKTHDKSVVFPITEVVSKNEFFDFNAKYKGEVTEI 253

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++ + VQ+L    +  + C+GI R D++      K+  LEIN  PGMT  S  
Sbjct: 254 TPARLSPELTQRVQQLTSAIYDILDCKGIVRVDYIITE-GDKINMLEINTTPGMTATSFI 312

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++ED
Sbjct: 313 PQQVRAAGLDIKDVMTDIIED 333


>gi|261368270|ref|ZP_05981153.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
 gi|282569787|gb|EFB75322.1| D-alanine--D-alanine ligase [Subdoligranulum variabile DSM 15176]
          Length = 370

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 95/360 (26%), Positives = 162/360 (45%), Gaps = 62/360 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGLVLAHLKP----- 51
           +A+  GG+SSE EVS  S  A   AL +A     ++V  + + ++   +  H  P     
Sbjct: 9   VALFFGGVSSEHEVSCVSASAWLRALNEAPCAGRYEVFPVGITKTGRWLACHPTPEAMAD 68

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+   V+HG  GEDG +Q + E+ 
Sbjct: 69  GSWEQGADCVPCILSPDRGDHGVWLLRDGQAELVPIDICAPVMHGKNGEDGTIQGLFEMA 128

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISP 126
            IPY   G+LASA+ MDK  +  V+ + GVP C      R  ++          +  +  
Sbjct: 129 RIPYVGCGVLASAVCMDKALANTVMDAAGVPHCRWTSAIRAEVEQDRAAVLDRAEAALGY 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+G  + K      LD     +    D++++E+++DG E+ C  +G+  
Sbjct: 189 PIFVKPANAGSSVG--ISKAADRAALDAALDVALREDDKVVLEEFIDGQEVECAAIGNPD 246

Query: 187 LDVTEIAVPK------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                           ++FY+Y+ KY +  S  V+PA +  +   EV+  A  A+ A+GC
Sbjct: 247 DPANITTTRPGEILAGAEFYTYDDKYKNGVSQTVIPAHLSEEKLDEVKAEARKAYLALGC 306

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            G+SR DF  +  + +V   E+N  PG T +S++P++  + G +F +L+  +++ A   R
Sbjct: 307 AGLSRCDFFVERGTGRVLCNELNTLPGFTAISMYPKLMEHEGVNFPQLVDRLLQLAVRRR 366


>gi|212212282|ref|YP_002303218.1| D-alanyl-alanine synthetase A [Coxiella burnetii CbuG_Q212]
 gi|212010692|gb|ACJ18073.1| D-alanine--D-alanine ligase [Coxiella burnetii CbuG_Q212]
          Length = 373

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 90/352 (25%), Positives = 157/352 (44%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           ++VL GG S+E E+S+ S K   + L+ A + +S I +D      L              
Sbjct: 8   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIDHVGRWYLIDQPEMFLAYSPDH 67

Query: 50  ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 68  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++        +        +    +K
Sbjct: 128 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +     + D L++E  + G E+ C V+G+ +   + 
Sbjct: 188 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDHLMVEPRIRGREIECAVLGNGAPKASL 245

Query: 192 I--AVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY     +T      +   + K++Q++A  A + + C G++R DF
Sbjct: 246 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSGSVTKQIQQIAIDAFKMVHCSGMARVDF 305

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A   R
Sbjct: 306 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 355


>gi|298372650|ref|ZP_06982640.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275554|gb|EFI17105.1| D-alanine--D-alanine ligase [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 322

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/321 (24%), Positives = 147/321 (45%), Gaps = 28/321 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQID--------------VDRSVGL 44
           +A++ GG SSE EVSL S     S + D    + V+ I               +D++   
Sbjct: 4   IAIVAGGDSSECEVSLRSADGIMSFIPDDYEKYIVTIIGKKWEVHLPDDRRAPIDKNDFS 63

Query: 45  VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
            +A  K    D A+  +HG  GE+G++Q   +L+ +P++   +LASAL+ +K      + 
Sbjct: 64  FVADGKKFTFDFAYITIHGTPGENGILQGYFDLIGMPFSCCDVLASALTFNKYVCNCFLK 123

Query: 102 SCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +  + V  S+                +  P  +KP  GGSS     +K    +   + ++
Sbjct: 124 NFDINVAESVLLRTNQVVDNESVVRELGLPLFVKPAAGGSSFCTTKVKSKDMLQQAIEEA 183

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVL 215
            +    D++++E +VDG E+TCG+       V            +       +  S  + 
Sbjct: 184 FAEA--DEVIVESFVDGTEVTCGMYKTKGKTVILPLTEVVSKNEFFDYNAKYNNQSDEIT 241

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+I   + + +++     ++ I  +GI R+D++ +P S ++  LE+N  PGMTP S  P
Sbjct: 242 PARISDKLTEAIKQTTAQIYELIAAKGIIRADYIIEP-SGRIVLLEVNTTPGMTPQSFLP 300

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
           +    AG    E++  ++ED+
Sbjct: 301 QQIRAAGMDIAEVMRDIIEDS 321


>gi|332880023|ref|ZP_08447707.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
 gi|332682019|gb|EGJ54932.1| D-ala D-ala ligase protein [Capnocytophaga sp. oral taxon 329 str.
           F0087]
          Length = 337

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 80/320 (25%), Positives = 142/320 (44%), Gaps = 30/320 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +A++MGG S E  VSL S +  A+ L    +    + +DR   + +              
Sbjct: 16  IAIIMGGYSDEAPVSLKSARVVANHLNKEKYTPYLVRIDRDKWVYVDEQNAEYPINRNDF 75

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      +  FN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 76  SVVINGQKITFEAVFNAIHGTPGEDGYLQAYFNLIGVPLTGCSMYASALTFNKRDMLSVL 135

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N+    S   I      P  +KP K GSSLG   + ++ ++   + +
Sbjct: 136 KPFGILSAPSYYLNKGENYSTADIVAKVGLPCFVKPNKAGSSLGASKVNEEAALKEAIDK 195

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + +    D++LIE ++ G E++ GV+    +              +       +  S  +
Sbjct: 196 AFAV--DDEILIESFLKGTEISIGVIKYRGVIKVLPMTEIVSENDFFDYDAKYNGKSQEI 253

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++  ++  LA   ++ +   G SRS+F+   +    + LE+N  PG++  S+ 
Sbjct: 254 TPARISEEMTAKINALAERVYRLLKMEGFSRSEFII--VGDTPYLLEMNTTPGLSEASLL 311

Query: 275 PEMAAYAGYSFRELLLWMVE 294
           P+ A  AG S  +L    +E
Sbjct: 312 PQQAKVAGISLADLFESEIE 331


>gi|291549120|emb|CBL25382.1| D-alanine--D-alanine ligase [Ruminococcus torques L2-14]
          Length = 350

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 95/351 (27%), Positives = 152/351 (43%), Gaps = 55/351 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + VL GG+S+ER+VSLSS       L + G     +DV                      
Sbjct: 3   IIVLAGGLSTERDVSLSSAAGICRTLVEKGHDAFLLDVFMGLENAPENLEDVFTLPDHGL 62

Query: 39  --------DRSVGLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAIL 72
                   +      +   +PD                  + F  LHG  GE+G +QA  
Sbjct: 63  EIVKNISTEEPDLEAVKASRPDQSDCFFGPNVIELCRLADITFLGLHGGEGENGKLQASF 122

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYV 129
           +LL I YT    L  A++M K  +KQ+    GV           +         ++ P V
Sbjct: 123 DLLGIKYTGPDSLGCAVAMHKGVAKQIFLESGVDTPGGGTIYKNSEDQSYQSLGLTLPVV 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP  GGSS+G+ ++  D+     L +S    + D+L++E Y+ G E  CG++   +L  
Sbjct: 183 VKPCSGGSSIGVYIVNTDEEYAEALKKSF--RYEDELVVEPYIKGREFACGIIDGTALPP 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
               +PK+ F+ Y  KY    ++ V PA IP ++ + ++ L   A  A+     SR+DFL
Sbjct: 241 I-EIIPKTGFFDYANKYQDGATSEVCPADIPEEVAERMKELTVKAFNALKLNVYSRADFL 299

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D     +F LE+N  PGMT  S+ P+ A   G  + +L   +++ +   R
Sbjct: 300 LDAEGN-LFCLEMNTLPGMTSASLLPKEAKVYGIEYGDLCELIIKKSMEAR 349


>gi|260904755|ref|ZP_05913077.1| D-alanine/D-alanine ligase [Brevibacterium linens BL2]
          Length = 371

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 143/357 (40%), Gaps = 64/357 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG SSE  VS  +      A+ D  ++V  I + ++    +              
Sbjct: 10  VAVLFGGRSSEHAVSCVTAAGVIRAIADDAYRVLPIGITKAGVWRIVEDWSTMAFDPDNM 69

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F +LHG +GEDG +Q + EL 
Sbjct: 70  PEVVDNGTEIIPPISAQGSPLLQRDAEGNYSELGSVDVYFPLLHGQYGEDGTLQGLFELS 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISPP 127
           +  +  SG+ ASA SMDK  +K +++  G+P CP  LV     ++           +  P
Sbjct: 130 DTAFVGSGVFASAASMDKHYTKSLMAHAGIPTCPWELVTETMWEADQAEAQDRITGLGLP 189

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP + GSS+G+  ++  + +   L  +    H  ++++E  V G E+ C V+G    
Sbjct: 190 VFVKPARAGSSMGVSRVESAEGLDQALRSAF--EHDSKVIVEPQVVGREIECAVLGSVHD 247

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIG 239
               ++ P     S E  +    + +          PA++       +Q L+    +   
Sbjct: 248 REVRVSFPGEIEVSGEHSFYDFEAKYLNLADAQLTCPARVDETTTARIQELSAQVFRLFD 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           C G+SR D        +V   EIN  PG TP S +P M + +G  +  L+  ++  A
Sbjct: 308 CTGLSRVDTFVTDA-GEVLINEINTLPGFTPTSAYPFMWSKSGIEYPALISELITIA 363


>gi|319953857|ref|YP_004165124.1| d-alanine--d-alanine ligase [Cellulophaga algicola DSM 14237]
 gi|319422517|gb|ADV49626.1| D-alanine--D-alanine ligase [Cellulophaga algicola DSM 14237]
          Length = 326

 Score =  149 bits (375), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 90/326 (27%), Positives = 146/326 (44%), Gaps = 30/326 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG       +   F +  I +                    D 
Sbjct: 5   IAIIMGGYSSEYKISLKSGSVVYKYTDKEKFNLFCIHIFKEKWVYVTENKEEFPVNKHDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    +  D  FN +HG+ GEDGL+Q+  ELL IP T      SAL+ +K     V+
Sbjct: 65  SVEINNQKITFDCIFNAIHGSPGEDGLMQSYFELLNIPQTSCDAYQSALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    S  +N      +  I      P  +K  K GSS GI+ + K + +   +  
Sbjct: 125 KPYGIKAAASYYLNLGDAIDEESIVAKVGLPCFVKANKAGSSFGIMKVYKKEDLKAAIEN 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
           +      D+++IE ++DG E++ GV+    +              +    +     S  +
Sbjct: 185 AY--KEDDEIIIEGFLDGTEVSVGVLKYKGVTKVLPVTEIVSENDFFDYEAKYAGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I     ++V  LA  A+  +  +G SRS+F+F  +  + F LE+N  PG+T  SI 
Sbjct: 243 TPARITKTQEQKVSDLAKKAYDVLKMKGFSRSEFIF--IDDEPFMLEMNTNPGLTEESIL 300

Query: 275 PEMAAYAGYSFRELLLWMVEDASCLR 300
           P+ A  AG S  EL    + +A  ++
Sbjct: 301 PQQAKVAGISLPELFENAINEALTVK 326


>gi|51598461|ref|YP_072649.1| D-alanyl-alanine synthetase A [Borrelia garinii PBi]
 gi|81610159|sp|Q662G4|DDL_BORGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|51573032|gb|AAU07057.1| D-alanine--D-alanine ligase [Borrelia garinii PBi]
          Length = 361

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 158/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L  D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLDIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++                +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQYDYFLDKEEVKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKS 197
           I V   +  I        +  +   +LIE++++  E+ C ++G+         E+ V   
Sbjct: 187 INVAYSENQIE--FFIEEALKYDLTILIEKFIEAREIECSIIGNEKIKIFSPGEVIVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA++  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            K++  EIN  PG T +S+F +M ++ G  F++L+  ++  A
Sbjct: 305 GKIYLNEINTIPGFTDISMFAKMCSHDGLQFKDLVDNLINYA 346


>gi|56201414|dbj|BAD72950.1| D-Ala:D-Ala ligase [Enterococcus faecalis]
          Length = 356

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 143/342 (41%), Gaps = 47/342 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L G  S E +VS+ S  +  +A+    ++V  + + +    V   L   +P      
Sbjct: 3   IILLYGDRSEEHDVSVLSAYSVLNAIYYKYYQVQLVFISKDGQWVKGPLLSERPQNKEVL 62

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  +E + +PY  +G
Sbjct: 63  HLTWAQTPEETGEFSGKRISPSEIYEEEAIVFPVLHGPNGEDGTIQGFMETINMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           +LAS  +MDK+ +K ++ + G+P  P + V R              +  +  P  +KP  
Sbjct: 123 VLASVNAMDKIMTKYLLQTVGIPQVPFVPVLRSDWKGNPKEVFEKCEGSLIYPVFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI  ++  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGISKVENREELQEALEEAFRYDARAIVEQGIEAREIEVAILGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY Y+ KY +      +PA +P ++  + Q  A  A+  +   G+SR DF      
Sbjct: 243 KDVAFYDYDAKYINNTIEMQIPAHVPEEVAHQAQEYAKKAYIMLDGSGLSRCDFFLTSK- 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++F  E+N  PG T  S++P +    G  + +L+  +++ A
Sbjct: 302 NELFLNELNTMPGFTDFSMYPLLWENMGLKYSDLIEELIQLA 343


>gi|300783664|ref|YP_003763955.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299793178|gb|ADJ43553.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 364

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 89/356 (25%), Positives = 155/356 (43%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG SSE  +S  S  +    L+   F+   + + R    VL              
Sbjct: 7   VAVVFGGRSSEHTISCLSAGSVLGHLDPERFEAVPVGITREGRWVLGSGDSAQLAVRGRE 66

Query: 49  ---------------------------------LKPDLAFNVLHGNFGEDGLVQAILELL 75
                                             + D+ F VLHG FGEDG +Q +LEL 
Sbjct: 67  LPSVDDGQGLVLAGDPSSQGLVAVEAGRESELLSRVDVVFPVLHGAFGEDGTIQGLLELA 126

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
            IPY   G+LASA +MDK  +K+++++ G+PV          +      +  +  P  +K
Sbjct: 127 GIPYVGPGVLASAAAMDKETAKKLLAAEGLPVGTFSALKRGQSTLEQTDREKLGLPVFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--- 188
           P + GSS+GI  +     +   +  + +     ++L+E  V G E+ CGV+         
Sbjct: 187 PSRAGSSVGISRVADWAGLDAAIALARAT--DPKVLVEAAVVGREVECGVLEFPDGHVEA 244

Query: 189 -----VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                +  ++  ++ +Y +E KY   ++   +PAK+   + ++++ +A  A +A+ C+G+
Sbjct: 245 SLPAEIRVLSEDENAWYDFETKYLGDDAELDIPAKLDDALTEKLRAMAVEAFRALDCQGL 304

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF       ++   E+N  PG T  S +P+M    G  +  LL  +VE A   
Sbjct: 305 ARVDFFVTE-DHQLIINEVNTMPGFTTKSAYPKMWEVTGMDYPTLLTTLVETAIAR 359


>gi|302525004|ref|ZP_07277346.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
 gi|302433899|gb|EFL05715.1| D-alanylalanine synthetase [Streptomyces sp. AA4]
          Length = 365

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 92/356 (25%), Positives = 151/356 (42%), Gaps = 60/356 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG SSE  +S  S  +  S L+   F+V  + V  S G VL    P         
Sbjct: 8   VAVVFGGRSSEHTISCLSAGSVISNLDPDRFEVLPVGVTPSGGWVLGTGDPQQLSIRGRE 67

Query: 52  ------------------------------------DLAFNVLHGNFGEDGLVQAILELL 75
                                               D+ F VLHG FGEDG +Q +LEL 
Sbjct: 68  LPSVESGRALVLAGDPTSRELRTVDPGQATEVLGTVDVVFPVLHGAFGEDGTIQGLLELA 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIK 131
           ++PY   G+ ASA +MDK  +K+++++ G+PV     + R            +  P  +K
Sbjct: 128 DLPYVGPGVFASAAAMDKEYAKKLLAAEGLPVGTYAALRRGQSTLAEADRERLGLPVFVK 187

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P + GSS+GI  +     +   +  +       ++L+E  V G E+ CGV+      V  
Sbjct: 188 PSRAGSSVGISRVADWADLDAAIELARRT--DPKVLVEAAVRGREVECGVLEFPDGRVEA 245

Query: 192 IAVPKSD--------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +          +Y +E KY   ++   +PAK+   +   ++ +A  A +A+ C+G+
Sbjct: 246 SLPAEIRVLAEGEDAWYDFETKYLGEDAELDIPAKLDDALTDRLRAMAVEAFRALDCQGL 305

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +R DF        +   E+N  PG T  S +P+M    G  +  LL  +++ A   
Sbjct: 306 ARVDFFVTEE-GDLVINEVNTMPGFTTKSAYPKMWEVTGVDYPTLLSTLIDTALAR 360


>gi|119025204|ref|YP_909049.1| D-alanyl-alanine synthetase A [Bifidobacterium adolescentis ATCC
           15703]
 gi|166198475|sp|A0ZZT4|DDL_BIFAA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|118764788|dbj|BAF38967.1| D-alanine-D-alanine ligase [Bifidobacterium adolescentis ATCC
           15703]
          Length = 378

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 140/370 (37%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S  +   AL+   F+   + + +    ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D  F VLHG +GEDG +Q + E
Sbjct: 66  PTVEKTPGAKDVVLEVALGQDGFFAREDDGTMTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++  + D              
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKTDADAIMA 185

Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V  +  +  L      +  H  ++L+EQ +D  E
Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASRHDWRILVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + +  + + P         +                     +PA +P +  
Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        KV   EIN  PG T +S++P+     G  
Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVT-KDGKVMVNEINTMPGFTSISMYPKAWEATGVR 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLITKLIE 374


>gi|47834368|gb|AAT38881.1| D-alanyl-D-alanine ligase [Amycolatopsis coloradensis]
          Length = 347

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 137/343 (39%), Gaps = 46/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG+S E  +S+ S       L+   ++   I + +                    
Sbjct: 6   IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65

Query: 45  ---------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                          VL   K      DL   VLHG  GEDG +Q +LE+  IPY    +
Sbjct: 66  RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  V+ + G+P     +V   T         P  +KP + GSS G  V 
Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFG--VS 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           K      L    + +     ++LIE+ V G E+ C ++G+    +       +  + +  
Sbjct: 184 KVSGKEELAAALAEARQFDSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243

Query: 205 KYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   +          ++PA I  +    VQ  A   ++A+GCRG++R D         V
Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              E+N  PG+T  S +P M A AG S  +++  +   A   R
Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345


>gi|154486582|ref|ZP_02027989.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
 gi|154084445|gb|EDN83490.1| hypothetical protein BIFADO_00399 [Bifidobacterium adolescentis
           L2-32]
          Length = 378

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 141/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S  +   AL+   F+   + + +    ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISAASALRALDTDKFEAIPVGITKDGKWIVNGENPLGWSLDEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D  F VLHG +GEDG +Q + E
Sbjct: 66  PTVEKTPGAKDVVLEVALGQDGFFAREDDGTLTPFGHVDAVFPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++  + D              
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARSFDKASEFKANADAIMA 185

Query: 125 -------SPPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V  +  +  L      + +H  ++L+EQ +D  E
Sbjct: 186 QVSEAGLQYPLFVKPSRAGSSFGVTKVEHEGDAAELAAAVYEASHHDWRILVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + +  + + P         +                     +PA +P +  
Sbjct: 246 IECAVLCPKAGEAPQASWPGEIVLDKRAEGDDQFYDFDSKYMDAAASHVEVPANLPEETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D        KV   EIN  PG T +S++P+     G  
Sbjct: 306 NLVRETAKKAFVAVDGAGLSRVDTFVT-KDGKVMVNEINTMPGFTSISMYPKAWEATGVR 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLITMLIE 374


>gi|325124996|gb|ADY84326.1| D-alanine-d-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 362

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S      A++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V +I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|189464335|ref|ZP_03013120.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
 gi|189438125|gb|EDV07110.1| hypothetical protein BACINT_00676 [Bacteroides intestinalis DSM
           17393]
          Length = 324

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 145/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE +VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGNKAPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQVDGKKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S++     +    D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +       ++L+E +++G E+TCG        V            +       +   + +
Sbjct: 185 AFGEA--QEVLVEAFMEGTEVTCGCYKTKKNSVVFPITEVVTENEFFDYDAKYNGQVSEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  D+   +Q L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|116513372|ref|YP_812278.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
 gi|122275858|sp|Q04CI2|DDL_LACDB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116092687|gb|ABJ57840.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 362

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S      A++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V +I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|104773391|ref|YP_618371.1| D-alanyl-alanine synthetase A [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|123077164|sp|Q1G7Q5|DDL_LACDA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|103422472|emb|CAI97025.1| D-alanine--D-alanine ligase [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 362

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 152/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S      A++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V +I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGQIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|323465695|gb|ADX69382.1| D-alanine--D-alanine ligase [Lactobacillus helveticus H10]
          Length = 360

 Score =  149 bits (375), Expect = 6e-34,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 147/340 (43%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG+    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNADEYAAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   ++R A   ++   C G++R D +  P  
Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTIRRNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|109240377|dbj|BAE96112.1| D-Ala:D-Ala ligase [Enterococcus raffinosus]
          Length = 359

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 81/341 (23%), Positives = 145/341 (42%), Gaps = 47/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD----- 52
           + +L GG S E +V++ S  +  SA+    ++V  I +D++   V   L    P+     
Sbjct: 8   IILLYGGKSPEHDVAILSAFSVISAVYFDYYQVQLIYIDKTGQWVKGPLLTEAPETDETL 67

Query: 53  -----------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                        + F VLHG  GEDG +Q  LE L++PY  +G
Sbjct: 68  RLTWDPTGHEVEGFSGKVIAPGDIKEDNAIVFPVLHGPNGEDGTIQGFLETLDMPYVGAG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLK 134
           ++ SA +MDK+ +K ++ + G+P  P + V +              +  +  P  IKP  
Sbjct: 128 VMTSACAMDKIMTKYILQAAGIPQVPYVPVLKNQWKENPKQIFDKCEGTLLYPMFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L ++  ++    +        IE+      D    +    V
Sbjct: 188 MGSSVGITRAENREELQNALQEAYRYDSRALVEQGIDAREIEVAVLGNDDVRTTLPGEIV 247

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +  FY Y  KY        +PA IP ++ ++ +  A  A+  +G  G+SR DF      
Sbjct: 248 KEEAFYDYNAKYIDNTIQMAIPADIPEEVMQKARDYAKSAYTMLGGSGLSRIDFFLT-NK 306

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++F  E+N  P  T  S++P +    G  + +L+  +++ 
Sbjct: 307 NELFLNELNTMPDFTEFSMYPLLWENMGLKYGDLIEELIQL 347


>gi|82658574|gb|ABB88463.1| DdlN [Amycolatopsis coloradensis]
          Length = 347

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 137/343 (39%), Gaps = 46/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +L GG+S E  +S+ S       L+   ++   I + +                    
Sbjct: 6   IGILFGGLSEEHPISIKSALEVQKHLDLGKYEPYYIGITQGGAWMLCDGPAADWETSGNC 65

Query: 45  ---------------VLAHLKP-----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                          VL   K      DL   VLHG  GEDG +Q +LE+  IPY    +
Sbjct: 66  RPAVLSPDRGVHGLLVLDEGKYETIALDLVLPVLHGKLGEDGAMQGLLEISGIPYIGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            +SA+ MDK  +  V+ + G+P     +V   T         P  +KP + GSS G  V 
Sbjct: 126 PSSAMCMDKSLTYSVIKAAGIPTPNFWIVTEDTDVDADAFDYPVFVKPARSGSSFG--VS 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           K      L    + +     ++LIE+ V G E+ C ++G+    +       +  + +  
Sbjct: 184 KVSGKEELAAALAEAREFDSKVLIEEAVIGSEIGCSILGNDDELLAGECDRVALTHGFFK 243

Query: 205 KYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
            +   +          ++PA I  +    VQ  A   ++A+GCRG++R D         V
Sbjct: 244 IHQEESPETGSENSSFIVPADISAESRAVVQDTAKAIYRALGCRGLARVDLFL-KEDGSV 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              E+N  PG+T  S +P M A AG S  +++  +   A   R
Sbjct: 303 VLNEVNTLPGLTSYSRYPRMMAAAGLSLGDVIDRLATLALARR 345


>gi|303236159|ref|ZP_07322760.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
 gi|302483665|gb|EFL46659.1| D-ala D-ala ligase N-terminal domain protein [Prevotella disiens
           FB035-09AN]
          Length = 331

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 142/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------SVGLVLAHLKPDL 53
           +A++ GG SSE +VSL S +   S  +   + +  +DV           G + A  K D 
Sbjct: 8   IAIICGGDSSEHDVSLRSAQGLYSFFDKELYNIYIVDVKGTDWHVNLDNGRIAAINKNDF 67

Query: 54  AFN-------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +FN              +HG  GE+G++Q  LEL+ +PY+   +L SAL+ DK    + +
Sbjct: 68  SFNNEGETVFFDYAYITIHGRPGENGIMQGYLELINMPYSTCDVLTSALTFDKFVLNRYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S G+ V  SI      +    + +  +  P  IKP   GSS G+  +K    I   L +
Sbjct: 128 KSYGIRVPESILLRLEDSYDEKEIEQKMGMPCFIKPATDGSSFGVSKVKNADQIAPALRK 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +       ++++E ++DGIE+T G+       V            +       +     +
Sbjct: 188 AFM--ESSEVMVEGFLDGIEITQGIYKTKEKSVPFPITEVVTSNEFFDYNAKYNGEVDEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271
            PA+I  ++  +V  +    +  +   GI R D++       +  +  LE+N  PGMT  
Sbjct: 246 TPARISKELADKVSEMTSRIYDILHANGIIRIDYIITKDEAGNDVINMLEVNTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +++L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIVEN 329


>gi|119952997|ref|YP_945206.1| D-alanyl-alanine synthetase A [Borrelia turicatae 91E135]
 gi|254767722|sp|A1QYZ4|DDL_BORT9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119861768|gb|AAX17536.1| D-alanine--D-alanine ligase [Borrelia turicatae 91E135]
          Length = 365

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKV------------SQID--------VDRS 41
           ++ GG+S E E+SL S     SAL     + V              +D        + + 
Sbjct: 8   LIFGGVSFEHEISLRSACGIYSALMKLDKYNVFSSFIDKITGVWYLLDSVPDDPKLIKKD 67

Query: 42  VGLVL------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
              ++              LK D+ F ++HG  GEDG +Q  L++++IP   SGIL SA+
Sbjct: 68  SSAIISLIPGYGIFVNNKDLKIDVVFPIVHGRTGEDGAIQGFLKIMDIPCVGSGILGSAI 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +P+ P I   ++           D +  +  P ++KP   GSS+G
Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFKKYDYLLDKEGIKKDIKQSLDYPVIVKPAMLGSSIG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I +   +  I   + ++    +   ++IE+++   E+ C              EI +   
Sbjct: 188 ISIAYNETQIEKCIEEAF--AYDLTVVIEKFMRAREIECAVIGNEQIKIFTPGEIVIQDF 245

Query: 198 DFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS+         +PA +      +++  AF  ++ +  RG++R DFL +  +
Sbjct: 246 VFYDYDAKYSTAPGNSVVFNIPAHLDTKHLLDIKEYAFFTYKCLELRGMARIDFLIEKDT 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             V+  EIN  PG T +S+F +M  + G  +  L+  ++  A
Sbjct: 306 DLVYINEINTIPGFTDISMFSKMCEHDGLDYGSLVDKLIALA 347


>gi|85083381|ref|XP_957113.1| hypothetical protein NCU05127 [Neurospora crassa OR74A]
 gi|28881417|emb|CAD70534.1| hypothetical protein [Neurospora crassa]
 gi|28918198|gb|EAA27877.1| predicted protein [Neurospora crassa OR74A]
          Length = 346

 Score =  148 bits (374), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 157/338 (46%), Gaps = 38/338 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------DVDR------ 40
           +A+++GG S E +VS+S+G A  + ++ A + + +I              D D+      
Sbjct: 9   IAIVVGGYSGEYDVSISTGNAIYANVDRARYNLYKIVIPRNPKAGWYHLTDNDKQIPVDR 68

Query: 41  -SVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
               + L     ++ DLA+  +HGN GE+G++Q   ++L +PYT  G   SAL+ +K   
Sbjct: 69  NDFSVTLSTGEKIQFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYTSALTANKGHC 128

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ-------HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             VV S GV       +      S             P  +KP  GGSS+    +K  + 
Sbjct: 129 NPVVRSFGVVEVAKSRLLHRNQISALDPEALLFEFDLPVFVKPASGGSSVATTKVKSIEQ 188

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLDVTEIAVPKSDFYSYEL 204
           +   +  +   +   Q+L+E++++G E  CGV+           +TE+       Y    
Sbjct: 189 VVQAVEDAMREDGNGQVLVEEFIEGREFNCGVIRDAEGWLHVFPITEVIPHGDSEYFDYN 248

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +S+ V PA++   +   ++  + + +  + CRG+ R D+ ++P    +++LE+N 
Sbjct: 249 AKYNGSSSKVTPAEVETQVSDRIKDTSTMLYDLLDCRGVVRFDYRYNPELYALYFLEVNT 308

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASCLR 300
            PG TP SI P+ A  AG S  +L   ++E   A+  R
Sbjct: 309 IPGQTPESIVPQQARAAGISTADLYHMVIECALAAASR 346


>gi|306820571|ref|ZP_07454202.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
 gi|304551388|gb|EFM39348.1| D-alanine-D-alanine ligase [Eubacterium yurii subsp. margaretiae
           ATCC 43715]
          Length = 401

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 77/368 (20%), Positives = 142/368 (38%), Gaps = 77/368 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + +  GG S+E EVS+ S    A   + + + +  I + +     ++             
Sbjct: 5   IGLFFGGNSTEHEVSIVSALQAAEFFDKSKYDIVPIYITKDNRFFVSEFTGKIEEYKNIK 64

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+AF ++HG   EDG +Q +L +L
Sbjct: 65  SLLEKSNQILLVKNGKKVDLVKYPFKVFGNKVYDYIDIAFPIVHGTNVEDGTLQGMLNML 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            IPY    + +SA+ MDK   K ++    +PV   ++VN+F           + +   + 
Sbjct: 125 GIPYVGCDVYSSAVGMDKYAMKCILKENNIPVLDCLVVNKFKYLENSDEVEENIKSKFNY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA- 185
           P ++KP   GSS+GI + + D S+   L  +  +++   ++        E+ C V+GD  
Sbjct: 185 PVIVKPFNLGSSVGIKIARDDSSLKDALDYAFGFSY-KLIVEPAITSIKEVNCSVLGDME 243

Query: 186 ------SLDVTEIAVPKSDFYSY-----------ELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                            S    Y             K +  + +  LPA I     + ++
Sbjct: 244 SASASECEQPIGSGEILSYQDKYESSSGKKTGTSNAKGTMESLSRKLPADIDETTRETIR 303

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++A    + +GC G++R DF+ D    K++  EIN  PG    S+   +    G  +  L
Sbjct: 304 KMAVDTFKTLGCSGVARIDFIIDEEENKIYVNEINTIPG----SLSFYLWKAVGMDYPNL 359

Query: 289 LLWMVEDA 296
           L  +++ A
Sbjct: 360 LEKLIQLA 367


>gi|315037378|ref|YP_004030946.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325955848|ref|YP_004286458.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|312275511|gb|ADQ58151.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1112]
 gi|325332413|gb|ADZ06321.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus 30SC]
 gi|327182683|gb|AEA31130.1| D-alanyl-alanine synthetase A [Lactobacillus amylovorus GRL 1118]
          Length = 360

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQKVGVPVADWISIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVNHVTNADEYAAAL--EEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   V++ A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPDEIIDTVRKNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIE 343


>gi|261338020|ref|ZP_05965904.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
 gi|270277527|gb|EFA23381.1| D-alanine--D-alanine ligase [Bifidobacterium gallicum DSM 20093]
          Length = 389

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 85/376 (22%), Positives = 144/376 (38%), Gaps = 81/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A++ GG + E  +S  S  +   AL+   F+   I + R    ++    P         
Sbjct: 8   VAIMYGGKADEHSISCISTASVLRALDAERFEPVLIGITRDGVWIVDGEDPRAWDLAAGL 67

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG  GEDG +Q + E
Sbjct: 68  PSVEQVPGSRPVVLDMSQGGDGFYARNADGTLESLGHIDVVFPVLHGPNGEDGTIQGLFE 127

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----------------T 117
           +L +PY   G+LASA SMDK  +K ++ + G+ V   I ++                   
Sbjct: 128 MLGVPYVGCGVLASAASMDKHYTKVLLDNAGIAVANGITLDTRAFDADTQFAAQGETLLN 187

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGDQLLIEQYV 172
           M  +  +  P  +KP + GSS G+  + +          L      +  H  ++L+EQ V
Sbjct: 188 MVEEAGLQYPLFVKPSRAGSSFGVTKVDRAGDAVSGAAQLAAAVYEAAQHDWRVLVEQGV 247

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIP 220
           D  E+ C V+   +    + ++P         +                     +PA +P
Sbjct: 248 DAREIECAVLCPVAGQPVQASLPGEIVLDRRAEGDDQFYDFDSKYMDKQASHVEVPAHLP 307

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D+ + V+  A  A +A+   G+SR D         V   EIN  PG T +S++P+    
Sbjct: 308 EDVLERVRETAIKAFKAVDGMGLSRVDSFVTA-DGDVIVNEINTMPGFTSISMYPKAWEA 366

Query: 281 AGYSFRELLLWMVEDA 296
           +G  + EL+  ++E A
Sbjct: 367 SGLPYGELITTLIEGA 382


>gi|258655502|ref|YP_003204658.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258558727|gb|ACV81669.1| D-alanine--D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 315

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 93/312 (29%), Positives = 149/312 (47%), Gaps = 16/312 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S ER+VSL SG     AL   G +V+  D D  +   L   +PD A   LHG
Sbjct: 5   VVVLAGGLSHERDVSLRSGSRLQDALHGRGLEVTPRDTDGELIDWLTGQRPDAAIVALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           + GE+G +Q+ILE++ IPY  +      LS +K  +K ++   G      + ++  T   
Sbjct: 65  SRGENGAIQSILEMIGIPYVGTTSTNCRLSYEKNIAKNLMRRHGFATPAWVSLSHSTFRD 124

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP  GGS+LG   ++    +P  L    ++ +G+  ++EQ
Sbjct: 125 LGAQTLMGLLVGHLGLPLMVKPQHGGSALGATPVRTADELPAAL--VGAFAYGEIAVVEQ 182

Query: 171 YVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +++G EL   V+               P S  + YE +Y++  +T+  PA++   +    
Sbjct: 183 FIEGTELAITVVDRRDGPQALPAVEIAPHSGVFDYESRYTAGLTTYYTPARLDEAVATAA 242

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA  AH+ +G R +SR+D         V +LE+NV PG+T  S+ P     AG S  E
Sbjct: 243 AELAIGAHRTLGLRDVSRTD-AIAGADGAVHFLEVNVSPGLTETSLLPMAVEAAGGSLGE 301

Query: 288 LLLWMVEDASCL 299
           L   +VE A   
Sbjct: 302 LYAGLVERAVAR 313


>gi|257069004|ref|YP_003155259.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
 gi|256559822|gb|ACU85669.1| D-alanine--D-alanine ligase [Brachybacterium faecium DSM 4810]
          Length = 371

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 93/366 (25%), Positives = 158/366 (43%), Gaps = 69/366 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG S E  +S  +     +A++   F+V  + + R    +     P         
Sbjct: 5   VALLFGGRSGEHGISCVTAGGILAAIDRERFEVIALGITREGRWLHVSDDPSDWTLVDGR 64

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D+ + +LHG +GEDG VQ +
Sbjct: 65  APEIDPSGNEVLLPHSRHRPGERITLRTVRDGLIQDLADVDVFWPLLHGVYGEDGTVQGM 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---------H 122
           LE+L+IPY  SG+LASA +MDK  +K V+ + G+   P I+V+      +          
Sbjct: 125 LEMLDIPYVGSGVLASAAAMDKAATKLVLRAAGLDCAPGIVVHEDRWAEESHRVATYLRR 184

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P+ +KP + GSSLG+  +     +   + ++       ++L+E+ +D  E+ CGV+
Sbjct: 185 NHPLPWFVKPARAGSSLGVTRVTDPAQLEAAMKEAF--AEDPKVLVEEGLDAREVECGVL 242

Query: 183 GDASLDVTEIAVP-------KSDFYSYELKYSSL-NSTHVLPAKIPLDIYKEVQRLAFLA 234
             A        +P         +FY YE KY      +  +PA +P  + +EV+  +  A
Sbjct: 243 QGADRQEPSTTLPGEVKVGRDLEFYDYEAKYFGKGTVSIDVPAALPDAVLEEVRETSCRA 302

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+G  G++R D        +V   E+N  PG TP S+FP +    G S+ +L+  ++E
Sbjct: 303 FRALGLEGLARVDMFVT-SDHRVLINEVNTMPGFTPYSMFPVLWENMGLSYADLIAELIE 361

Query: 295 DASCLR 300
            A   R
Sbjct: 362 QARSRR 367


>gi|300811464|ref|ZP_07091958.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300497537|gb|EFK32565.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 362

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 86/343 (25%), Positives = 151/343 (44%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S      A++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKNDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V  I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQVTECSGMARVDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|325268628|ref|ZP_08135258.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
 gi|324989156|gb|EGC21109.1| D-alanine-D-alanine ligase [Prevotella multiformis DSM 16608]
          Length = 332

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 80/324 (24%), Positives = 141/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ SG+   S  +   + +  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDRSLAPIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             + + +    D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVENGRRREFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKFVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SIL+ R    ++  I      P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVKVADSILLRRGEPYNEAEIEKRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      ++++IE ++DG+E++ GV       V   A        +       +     +
Sbjct: 188 AFM--ESNEVMIEGFMDGMEISQGVYKTKEKAVVFPATEVVTSNEFFDYNAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271
            PA++  +    V       +  +   GI R D++          V  LEIN  PGMT  
Sbjct: 246 TPARMSPETAARVAAETSRIYDILHANGIIRIDYIISKDKDGEDVVNMLEINTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +E+L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|295132690|ref|YP_003583366.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
 gi|294980705|gb|ADF51170.1| D-alanyl-alanine synthetase A [Zunongwangia profunda SM-A87]
          Length = 324

 Score =  148 bits (374), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 90/323 (27%), Positives = 157/323 (48%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + ++   V+AH            
Sbjct: 5   IAIAMGGFSSEYRISINSGNMVYENLDRNKYEPYRVHILQNEWFVVAHDDTPYPINKNDF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +K D  FN +HG  GE+GL+QA LELL IP T +    SAL+ +K     V+
Sbjct: 65  TVKMGTEIIKFDCVFNTIHGTPGENGLLQAYLELLNIPQTAANHYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    +  +N+    +   I      P  +K  + GSS GI  +K+   +      
Sbjct: 125 KPYGIKSAKNYFLNKEDAINPDEIIKKVGLPCFVKANRAGSSFGITKVKQKNELYRAAQN 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +      D+ +IE ++DG E++ GV+              V +++F+ YE K     S  
Sbjct: 185 AF--QEDDEAIIESFLDGTEVSVGVITYNREIIALPVTEIVSENEFFDYEAK-YLGKSQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I     K+VQ +A L ++ +  +G +RS+F+F   + +  ++E+N  PG++  SI
Sbjct: 242 ITPARISEKDTKKVQEIAKLIYKKLKMKGFTRSEFIF--HNGEPHFIEMNTTPGLSQASI 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ AA AG S ++L    +E +
Sbjct: 300 LPQQAAKAGISLQDLYGSAIEAS 322


>gi|259503673|ref|ZP_05746575.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
 gi|259168392|gb|EEW52887.1| D-alanine-D-alanine ligase A [Lactobacillus antri DSM 16041]
          Length = 377

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 141/342 (41%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 37  ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+DR +  ++A  +    D  + V+HGN GEDG VQ + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAIDFFYPVIHGNLGEDGTVQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASALS DK  +K++++  G+   P +               +  +     IKP + GS
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  ++                   +  +  +     AV   
Sbjct: 187 SVGIHRVTNAEEYAAALKDAFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVRVP 246

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               +    +           LP K+P  +  E+  +A  A++ +G +G+SR DFL D  
Sbjct: 247 KDDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD-S 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  ++E 
Sbjct: 306 NNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIEL 347


>gi|323341782|ref|ZP_08082015.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
 gi|322464207|gb|EFY09400.1| D-alanine-D-lactate ligase [Erysipelothrix rhusiopathiae ATCC
           19414]
          Length = 338

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 80/334 (23%), Positives = 140/334 (41%), Gaps = 42/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A++ G I+SE ++S++S  +         F    + + +       +            
Sbjct: 6   VALVFGSINSEHDISVASAASVLEHFPKEKFDCVPLYIGKDGKWYTGNYTLDMMQSNKLE 65

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D+AF +LHG  GE G VQ +L+   IP+T   +
Sbjct: 66  GHRELYLQFNYDRPGFIYADDQSLLPVDVAFLMLHGRMGEGGQVQGLLKCANIPFTGCDV 125

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L+SAL MDK  +  +  + G+ +    L+          +  P ++KP + GSS G+  +
Sbjct: 126 LSSALCMDKGFTHIICEAAGIDMAAYQLITHINDIDFEKVEYPCIVKPSREGSSFGVSYV 185

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS---DFYS 201
           +    +        ++    ++LIE Y+ G E+  G++      +       +   + + 
Sbjct: 186 RNYDELLNA--CLFAFEFDSRVLIEAYIKGTEVGLGILKTDQELIVSEVDQVNVSGEVFD 243

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ KY    +  +  +  P  + KEVQRL  LA   + C   SR DF       ++F  E
Sbjct: 244 FQEKYHPHATETLPVSTFPESVRKEVQRLGELAFNVLDCAQFSRLDFFVTE-DHRIFLNE 302

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +N  PG T  S +P M   AG S+ EL+  M+ED
Sbjct: 303 VNTIPGFTSSSRYPGMLDRAGVSYPELITKMIED 336


>gi|329964665|ref|ZP_08301719.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
 gi|328525065|gb|EGF52117.1| D-ala D-ala ligase protein [Bacteroides fluxus YIT 12057]
          Length = 326

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 148/321 (46%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPGGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFRLDGEKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+++ +    S       I  P  IKP  GGSS G+  +K ++ I   + +
Sbjct: 125 KAFGVRIAESLMLRQGQSVSNRDVLEKIGLPCFIKPSLGGSSFGVTKVKTEEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           +       ++++E ++DG E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFEEA--QEVVVEAFMDGTEITCGCYKTKDKAVVFPITEVVTHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDDLTRRVQALTSAIYDILGASGIIRVDYIITA-GDKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|284993431|ref|YP_003411986.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
 gi|284066677|gb|ADB77615.1| D-alanine--D-alanine ligase [Geodermatophilus obscurus DSM 43160]
          Length = 329

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            VL GG++ EREVSLSSG   A  L  AG +    D D  +   LA    D  F  LHG 
Sbjct: 20  VVLAGGLNVEREVSLSSGTQVAEELARAGVEAELRDADAELLPGLAAAPADAVFIALHGA 79

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-- 119
            GEDG ++A+L+L  +PY  S   +  L+ DK  +K VV S GV     + +   T    
Sbjct: 80  TGEDGALRAVLDLAGVPYVGSPAASCRLAWDKPAAKSVVRSAGVTTPDWVALPHSTFREL 139

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP  GGS+LG+  + + + +P  +   S + +GD +++E++
Sbjct: 140 GAGAVLDLIVARLGLPLMVKPASGGSALGVQKVSRVEDLPAAM--VSCFAYGDTVMVERF 197

Query: 172 VDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           VDG+E       +             P+S  + Y  +Y+   + +  PA++  ++  +  
Sbjct: 198 VDGVELALSVVDLGEGPQALPAVEIAPESGVFDYTSRYTPGLTEYHAPARVSDEVAGKAA 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            LA   H+A+G   +SR+D +  P   +V +LE+NV PG+T  S+FP     +G S  ++
Sbjct: 258 ELAVQVHRALGLADLSRTDAIVGP-DGEVHFLEVNVSPGLTRTSMFPMAVEASGSSLGDV 316

Query: 289 LLWMV-EDASCLR 300
           L  ++   AS  R
Sbjct: 317 LAGLLTRRASTTR 329


>gi|139439868|ref|ZP_01773233.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
 gi|133774796|gb|EBA38616.1| Hypothetical protein COLAER_02267 [Collinsella aerofaciens ATCC
           25986]
          Length = 321

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 104/305 (34%), Positives = 161/305 (52%), Gaps = 15/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK-VSQIDV-DRSVGLVLAHLKPDLAFNVL 58
           +AVL GG S+ERE+SL+SGK    AL++AG+  V  ID       + +A    D+AF  +
Sbjct: 11  VAVLAGGHSAEREISLNSGKNVVVALKEAGYTSVELIDTAADDFMVTMATGGFDVAFIAM 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           HG  GEDG +Q  +E L IPYT SG+LASA   DK  SK + +  G+P+ P     +   
Sbjct: 71  HGAGGEDGAMQGAMETLGIPYTASGVLASACGADKEVSKLLYAKAGIPIAPGLALEVGDE 130

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                   +      +KP   GSS GI ++ +   +P  +  + ++ +GD++L+E+ ++G
Sbjct: 131 VDIDHIVEVCGERCFVKPAVNGSSYGISLVHEPSELPAAI--AKAFAYGDKVLVEKCIEG 188

Query: 175 IELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            E+T GV G+  +    I         +FY  ++KY      H +PA+I  + Y   Q L
Sbjct: 189 TEITVGVYGEDDVRALPIVEIRKPEDCEFYDLDVKYVDPTDIHRIPAQISPENYARAQEL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFRELL 289
           A  AH+A+GC GISRSDF+          LE N  PGMT  S++P+   +    +F ++ 
Sbjct: 249 ACAAHKALGCLGISRSDFIVSEDG--PVILETNTIPGMTDTSLYPDEIRHTDDMTFPQVC 306

Query: 290 LWMVE 294
             ++ 
Sbjct: 307 DSLIR 311


>gi|323436208|ref|ZP_01051417.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
 gi|321496523|gb|EAQ37719.2| D-alanine-D-alanine ligase [Dokdonia donghaensis MED134]
          Length = 331

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 93/324 (28%), Positives = 147/324 (45%), Gaps = 33/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AVLMGG SSE E+SL+SG    ++L+   ++V  + +                   D S
Sbjct: 6   IAVLMGGYSSEYEISLNSGATVVASLDKEKYQVYAVHILAEGWFCVVDGERFTIDKGDFS 65

Query: 42  VGLV-LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +  D  +N +HG  GEDG +QA LELL IP T  G   SAL+ +K  S  V+
Sbjct: 66  FKDASAKKVTFDACYNTIHGTPGEDGKLQAYLELLGIPQTSCGFYESALTFNKRDSLSVL 125

Query: 101 SSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+           F       +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAASVYVNKGDEIDMSFKNLLAIKVGYPCFVKPNRAGSSYGVSKVYKEGDLIAA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNS 211
           L   +++   +Q+LIE ++ G E++ GV    +               +       S  S
Sbjct: 186 L--DNAFKEDNQVLIESFLSGTEVSVGVYDFGNGAEVLPVCEIVPDGDFFSLEAKYSGKS 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++PA++      +VQ L    ++ +G +GI R DF+F     K  ++E+N  PG++  
Sbjct: 244 QEIVPARLDERETADVQGLTKGIYELLGLKGICRIDFIFHE--GKPHFVEVNTNPGLSKE 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           SI P     AG S  E+    +E 
Sbjct: 302 SIIPREFKAAGLSLTEVFGKAIET 325


>gi|239944155|ref|ZP_04696092.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|239990610|ref|ZP_04711274.1| D-alanine--D-alanine ligase [Streptomyces roseosporus NRRL 11379]
 gi|291447625|ref|ZP_06587015.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350572|gb|EFE77476.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 320

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 97/305 (31%), Positives = 145/305 (47%), Gaps = 12/305 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG S ER  SL+SGK  A AL   GF    ID       + +  K D+A   LHG
Sbjct: 11  VGVLYGGDSPERAGSLASGKTAADALVSEGFNTLLID-TAEPQAIESIQKIDVALIALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG +Q +LE+L +PYT SG+LASA+ M K   KQ++SS G+     I ++      
Sbjct: 70  PGGEDGKIQGLLEILGVPYTGSGVLASAVGMHKPTFKQLISSHGLDTPKWITLDPSLTSD 129

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        +  P  IKP  GG SLG  + +        L   +  ++  + L+E+YV G
Sbjct: 130 EMSKVVESHVGWPVFIKPSAGGGSLGAGIGRSPSDFAHMLADLNRQDY-LEYLVEEYVPG 188

Query: 175 IELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              + GV+  +               +FY Y  K+         P+ +P D+ + +Q  A
Sbjct: 189 RPCSVGVIETSGRPEALPVHDVETDREFYDYAAKHDPSKRIENCPSILPKDVTERLQEEA 248

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              H   G  G+SR DF+ D  + +   LEIN  PG++ +     MA  AG S+  L+  
Sbjct: 249 VRIHMLTGAHGVSRVDFIVD-DNGRSVILEINTVPGLSDMGNLATMAKAAGMSYPALVTA 307

Query: 292 MVEDA 296
           +++ A
Sbjct: 308 VLKTA 312


>gi|300791157|ref|YP_003771448.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
 gi|299800671|gb|ADJ51046.1| D-alanine-D-alanine ligase [Amycolatopsis mediterranei U32]
          Length = 314

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 92/309 (29%), Positives = 150/309 (48%), Gaps = 16/309 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S ER+VSL SG+  ++AL+   F + + D D  +   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHERDVSLRSGRRLSAALKSESFGIEEWDTDAGLLERLRTQRPDAVVVALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GE+G VQ +LE+L +P+  +G      + DK  +K +V + G      +++   T   
Sbjct: 66  GEGENGSVQTVLEMLGVPFVGTGSQGCRRAWDKPTAKALVQNAGFVTPGWVVLPHSTFRE 125

Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V+++   +P  +     + +GD +L E+
Sbjct: 126 LGAQAVLDAMVETLGLPLILKPDQGGSALGTQVVREAAELPAAM--VGCFAYGDTVLAER 183

Query: 171 YVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +VDG+E+   V+              VP+S  Y Y  +Y++  +    PA++     K V
Sbjct: 184 FVDGVEVAVTVIEGEDGPEALPAVEIVPESGVYDYTARYTAGLTDFFTPARLDDAAAKAV 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             LA  AH+ +G R ISR+D         V +LE+N  PG+T  S  P     AG S   
Sbjct: 244 AELAVAAHRVLGLRDISRTD-AVVMADGTVHFLEVNPSPGLTETSTVPMAIEAAGKSLGA 302

Query: 288 LLLWMVEDA 296
           +   ++  A
Sbjct: 303 VFGELIGRA 311


>gi|282853666|ref|ZP_06263003.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282583119|gb|EFB88499.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
          Length = 365

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/354 (24%), Positives = 140/354 (39%), Gaps = 62/354 (17%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG+SSE  +S  S     +A++   F VS + +      V                
Sbjct: 7   AVIFGGMSSEHSISCLSAANVVAAIDAERFDVSGVGISPQGIWVRYGADEILALPGTGQL 66

Query: 46  -----------------------LAHLKPD---LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        D   + F VLHG FGEDG +Q +LE+  + Y
Sbjct: 67  PTVEMGDRPLVSVKQMPEGTCIVDTEGNVDAVQVVFPVLHGPFGEDGTIQGLLEMAGVRY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIK 131
              G+ ASA  MDK  +K ++S  GV V P ++V                  +  P  +K
Sbjct: 127 VGCGVAASANCMDKHLTKMILSEAGVLVGPYVVVRDHEWREDRNAVLKAASRLEYPLFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P +GGSS+GI  +   + +   +  +    H  ++LIEQ + G E+ C V+         
Sbjct: 187 PARGGSSIGISRVTSPEHLETAIEMAR--EHDSKVLIEQGIRGREIECSVIDGRHGAAPR 244

Query: 192 IAVPKSDFYSYELKYSSLNSTH---------VLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +VP          +    + +            A +     + VQ +A  A Q +GC G
Sbjct: 245 ASVPGEIVVHDPDGFYDFEAKYLSGEQKASVQAHANLDDVTRRRVQEVAIKAFQVLGCEG 304

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R D    P    V+  E N  PG T  S FP M   +G ++ +++  ++E A
Sbjct: 305 LARIDTFVTP-DGAVYVNEPNTMPGFTRSSGFPLMWQASGMTYAQIVSELIELA 357


>gi|193212474|ref|YP_001998427.1| D-alanyl-alanine synthetase A [Chlorobaculum parvum NCIB 8327]
 gi|238692634|sp|B3QMS4|DDL_CHLP8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|193085951|gb|ACF11227.1| D-alanine/D-alanine ligase [Chlorobaculum parvum NCIB 8327]
          Length = 364

 Score =  148 bits (373), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +A+  GG S E  +S+ S +A AS ++ + + ++ + +DR                    
Sbjct: 6   VALFFGGKSVEHIISIISARAVASHIDHSRYDITPLYIDRGGHWHGGACAKRILALDVAV 65

Query: 45  ------------VLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                        L  +                  D+AF  LHG++GEDG +Q  L+  +
Sbjct: 66  LLRNGGQDEVFERLDEITSFDEGKRFDLTAFFDSIDVAFLTLHGSYGEDGKIQGCLDTFD 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---------LVNRFTMDSQHLISPP 127
           IPY   G+ +SALSMDK  +K   +  GV V   +                      + P
Sbjct: 126 IPYAGCGLTSSALSMDKALTKLCAADAGVEVAGFMSVTSADYAADPQAICNAVTERFAFP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +     +   L ++       ++L+E+ + G E+   V+G+   
Sbjct: 186 VFVKPANLGSSVGISKVHNAAELRPALDKAC--ALDAKVLVEETITGREVEVAVLGNDDP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +     +P SDFY +E KY   ++  V+PA +P ++   V+  A    +A+GC G++R
Sbjct: 244 IASVPGEIIPGSDFYDFEDKYVKSDAKLVIPADLPGEVSAAVRNAALTVFKALGCSGMAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            DF  +  + ++   EIN  PG T +S++P + + +G  F EL+  
Sbjct: 304 VDFFVEHGTNRIILNEINTIPGFTDISMYPMLMSASGVEFDELISR 349


>gi|300769676|ref|ZP_07079559.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300492719|gb|EFK27904.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 374

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           + +L GG SSE +VS  S      A++   +++    + ++                   
Sbjct: 13  VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 72

Query: 44  LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            V+A   P                    D+ + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 73  QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 132

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137
           +LASA S DK  +KQ+++   +     ++V     D                IKP   GS
Sbjct: 133 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 192

Query: 138 SLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           S+GI   + +Q     +             + +   + V+   L       + L   ++ 
Sbjct: 193 SIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNENPKASKLGAIDVP 252

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              + +        +   T  LP ++P D+ K +Q+++  A +A+G +G++R DFL    
Sbjct: 253 KTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVSE- 311

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             + +  EIN  PG T +S++P++   +G S+  L+  +++ 
Sbjct: 312 DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQL 353


>gi|28378923|ref|NP_785815.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254557128|ref|YP_003063545.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308181131|ref|YP_003925259.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|38257320|sp|Q88UV8|DDL_LACPL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28271760|emb|CAD64666.1| D-alanine--D-alanine ligase [Lactobacillus plantarum WCFS1]
 gi|254046055|gb|ACT62848.1| D-alanine-D-alanine ligase [Lactobacillus plantarum JDM1]
 gi|308046622|gb|ADN99165.1| D-alanine--D-alanine ligase [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 370

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 78/342 (22%), Positives = 144/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           + +L GG SSE +VS  S      A++   +++    + ++                   
Sbjct: 9   VGMLFGGNSSEHDVSKRSAHNIYDAMDKNKYEIDLFLITKNGIVLSDAATRRVFDGEPED 68

Query: 44  LVLAHLKP--------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            V+A   P                    D+ + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 69  QVVAEEMPKLDMSDPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSG 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137
           +LASA S DK  +KQ+++   +     ++V     D                IKP   GS
Sbjct: 129 VLASAASFDKDITKQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGS 188

Query: 138 SLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           S+GI   + +Q     +             + +   + V+   L       + L   ++ 
Sbjct: 189 SIGIHKAENEQEYLDGLADAFKYDYKILVEESIDNPREVECSILGNENPKASKLGAIDVP 248

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              + +        +   T  LP ++P D+ K +Q+++  A +A+G +G++R DFL    
Sbjct: 249 KTDTFYDYNNKFVDASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFLVSE- 307

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
             + +  EIN  PG T +S++P++   +G S+  L+  +++ 
Sbjct: 308 DGEPYLGEINTLPGFTNISLYPKLWEVSGISYTALIDQLIQL 349


>gi|228472127|ref|ZP_04056893.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
 gi|228276330|gb|EEK15054.1| D-ala D-ala ligase [Capnocytophaga gingivalis ATCC 33624]
          Length = 325

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 88/323 (27%), Positives = 148/323 (45%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           +A+LMGG S E  VSL S    A  L+ + +   +I + +                    
Sbjct: 4   IAILMGGFSQEAAVSLQSAATVAEYLDKSKYTAYRILITKEKWVYTDTLGQEILVDKNDF 63

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            L L   K   D AFN +HG  GEDG +QA   L+ +P T   + ASAL+ +K     V+
Sbjct: 64  SLTLEGKKITFDCAFNAIHGTPGEDGNLQAYFALVGVPITGCSMYASALTFNKRDMLSVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+P   +  +N+    S   I      P  +K  + GSS+G+     ++ I   + +
Sbjct: 124 KPYGIPRAKAYYLNQGEPFSTREIIKTVGLPCFVKANRSGSSIGVFKAYDEKDIDQAIEK 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +       +++IE+++ G E++ GV+              V ++DF+ YE K     S  
Sbjct: 184 AFEV--DTEVIIEEFLKGTEVSVGVITYHGKKRVLPITEIVSENDFFDYEAK-YQGKSKE 240

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++  +  K+V+ +A   +  +  +G SRS+++   +      LE+N  PG+T  SI
Sbjct: 241 ITPARLSEEERKKVEEVALRVYNLLQMKGFSRSEYIL--VGGVPHLLEMNTTPGLTKNSI 298

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S   L    +E+A
Sbjct: 299 LPQQAKAAGISLTNLFDNAIEEA 321


>gi|317504078|ref|ZP_07962081.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
 gi|315664820|gb|EFV04484.1| D-alanine-D-alanine ligase [Prevotella salivae DSM 15606]
          Length = 331

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/324 (25%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKQKYNVFIVDVKGTDWHVHLDSGATVAIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFKLDGKSVFFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+L+ R     +  I      P  +KP   GSS G+  +K    +   L +
Sbjct: 128 RGFGVRVADSMLLRRGEEYDEAKIEARFGMPCFVKPAADGSSFGVSKVKNADQLAPALRK 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE +++G+E++ G+       V   A        +       +     +
Sbjct: 188 AFM--ESDEVMIEGFLNGVEISQGIYKTREKMVVFPATEVVTKNEFFDYDAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271
            PA++  +   +V       +  +   GI R D++   D     V   LEIN  PGMT  
Sbjct: 246 TPARLSKETADKVAAETSRIYDILHANGIIRIDYIISKDAEGNDVVNMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +++L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKDVLSDIVEN 329


>gi|187918073|ref|YP_001883636.1| D-alanyl-alanine synthetase A [Borrelia hermsii DAH]
 gi|229463733|sp|B2RZR0|DDL_BORHD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119860921|gb|AAX16716.1| D-alanine--D-alanine ligase [Borrelia hermsii DAH]
          Length = 365

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+SL S     SAL     + +    +D+ +    L              
Sbjct: 8   LIFGGVSFEHEISLRSAYGIYSALMKLDKYNLYPSFIDKITGIWYLLDSVPDAPELIKRD 67

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              L+ D+ F ++HG  GEDG +Q  L++++IP   +GIL SA+
Sbjct: 68  SSAIISLIPGCGIFVNDEDLEIDVVFPIVHGRTGEDGAIQGFLKMMDIPCVGAGILGSAI 127

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S++K   K ++ S  +P+ P I   ++             +  ++ P ++KP   GSS+G
Sbjct: 128 SINKYFCKLLLKSFNIPLVPFIGFRKYDYFLDKEGIKKDIKQSLNYPVIVKPAMLGSSIG 187

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I +   D  I   + ++    +   +++E+++   E+ C              EI V   
Sbjct: 188 ISIAYNDTQIEKCIEEAF--EYDLTVVVEKFMKVREIECSVIGNEQIKIFTPGEIVVQDF 245

Query: 198 DFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KYS++        +PA++ +    +++  AFL ++ +  RG++R DFL +  +
Sbjct: 246 VFYDYDAKYSTIPGNSVVFNIPARLDMKHLLDIKEYAFLTYKCLELRGMARIDFLIEKDT 305

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M  + G  +  L+  +V  A
Sbjct: 306 NLIYVNEINTIPGFTDISMFSKMCEHDGLDYESLVDNLVSLA 347


>gi|227894248|ref|ZP_04012053.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
 gi|227863968|gb|EEJ71389.1| D-alanine-D-alanine ligase [Lactobacillus ultunensis DSM 16047]
          Length = 360

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 82/340 (24%), Positives = 145/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKEKFDVHPIWITNEGYFADEKESFKVLEDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYNDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNAAEYTAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   V+  A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPKEIIDTVRANARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|318040424|ref|ZP_07972380.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0101]
          Length = 364

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 93/343 (27%), Positives = 151/343 (44%), Gaps = 50/343 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49
            ++ GG+S E  VS+ S    A+AL        +++S   +D+            VLA  
Sbjct: 9   GLVFGGVSGEHAVSIRSANTVAAALRRGANAERYQLSCFYIDQWGHWWPPAVADAVLAKG 68

Query: 50  KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            P                          +   VLHG  GEDG +Q +  L+++P+  SG+
Sbjct: 69  TPASREELPAAPLRPGFQGFPEGALDMQVWVPVLHGPNGEDGTIQGLFSLMQVPFVGSGV 128

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135
           L SA+ MDK   K   ++ G+P  P   V+               +  +  P  IKP   
Sbjct: 129 LGSAVGMDKQAMKAAFAAAGLPQVPYACVDAQELEADPQALLDRLEQQLGYPCFIKPANL 188

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IA 193
           GSS+GI        +   L  ++  +H  +L++EQ +D  EL C V+G  S+  +     
Sbjct: 189 GSSVGISKATNRSELLAGLELAA--SHDPRLVVEQGIDARELECAVLGGRSMQASVLGEI 246

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              +D+Y Y+ KYS   S  V+PA++   I    + +A  A +A+   G++R DF  D  
Sbjct: 247 CFDADWYDYDTKYSDGKSHTVIPAEVSSAISDRARSMAIAACRAVAAEGLARVDFFLDRS 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           S  ++  EIN  PG T  S++P +   +G     L+  +V+ A
Sbjct: 307 SGDLWLNEINTLPGFTSQSMYPMLWEASGLPLDALVHQLVQLA 349


>gi|291005733|ref|ZP_06563706.1| D-alanine--D-alanine ligase [Saccharopolyspora erythraea NRRL 2338]
          Length = 308

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 86/306 (28%), Positives = 149/306 (48%), Gaps = 16/306 (5%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG 63
           L GG+S ER+VSL SG+  ++AL   G  V++ D D  +   +   +PD     LHG  G
Sbjct: 2   LAGGLSHERDVSLRSGRRLSAALRSVGMTVAEWDADSRLLSRIEQERPDAVVVALHGGEG 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS--- 120
           E+G VQ++L++  IPY  +   A   + DK  +K  ++  G+     +++   T      
Sbjct: 62  ENGAVQSVLDMYGIPYVGTDPRACRRAWDKPTAKAELARSGLTTPDWVVLPHATFRELGA 121

Query: 121 -------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P ++KP +GGS+LG  V++    +P  +    + ++GD +L+E+Y++
Sbjct: 122 QSVLDALVAKLGLPLMLKPDQGGSALGARVVRDAADLPSAM--VGALSYGDTVLVEKYIE 179

Query: 174 GIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G E+                      +  Y Y  +Y++  +T+  PA++  +       L
Sbjct: 180 GTEVAIGVLDGPDGPEALPAVQIEATNGVYDYTARYTAGLTTYRTPAELSPETAAAAGDL 239

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  AH+ +G R +SR+D + D     V +LE+NV PG+T  S+ P     AG S  ++  
Sbjct: 240 AVAAHRLLGLRDVSRTDAIID-RDGTVHFLEVNVSPGLTETSLLPMAIEAAGRSLGDVFA 298

Query: 291 WMVEDA 296
            +VE A
Sbjct: 299 TLVERA 304


>gi|170782405|ref|YP_001710738.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169156974|emb|CAQ02143.1| D-alanine-D-alanine ligase [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 371

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 87/357 (24%), Positives = 140/357 (39%), Gaps = 65/357 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG SSE  +S ++      A++   F+V  + +       L              
Sbjct: 9   VVLLFGGTSSEHSISCATASGVLGAIDRERFEVIPVGITPRGAFTLQEDDASALALDAAA 68

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+ F +LHG  GEDG VQ +LEL
Sbjct: 69  LPEVVDDGSRVRWPEDAGSRELTVRDADGTERSLGPVDVVFPILHGTQGEDGTVQGMLEL 128

Query: 75  LEIPYTHSGILASALSMDKMRSKQV--------VSSCGVPVCPSILVNRFTMDSQHLISP 126
             +PY  SG+LASAL MDK  +K V             V             +    +  
Sbjct: 129 AGLPYVGSGVLASALGMDKHYAKTVLRAAGIEVAPWTTVSRQEWAADPAGVRERAAALGL 188

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------G 180
           P  +KP + GSS+G+  +     +   L  +      D++L+E  + G E+ C       
Sbjct: 189 PAFVKPARAGSSVGVSRVVATDGLDAALEVAF--REDDRVLVESGLVGREVECAILDEGP 246

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIG 239
               ++    EI V   DFY ++ KY   +    V PA +      E++ L+  A +A+ 
Sbjct: 247 GRAPSASVAGEIVVSGRDFYDFDAKYLGADGIDLVCPADMTDAELAELRELSIRAFRAVD 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            RG++R DF            EIN  PG TP+S+FP     +G ++ +L+  +++ A
Sbjct: 307 ARGLARVDFFLTADG--FVLNEINTMPGFTPISMFPACWEASGLAYPDLISRLLDVA 361


>gi|260593409|ref|ZP_05858867.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
 gi|260534685|gb|EEX17302.1| D-alanine--D-alanine ligase [Prevotella veroralis F0319]
          Length = 332

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 138/324 (42%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + +  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMHSAQGLYSFFDKERYNIYIVDVKGIDWHVELEDGTSAPIDKNDF 67

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +    H++ D A+  +HG  GE+G++Q   +L+ +PY+ S +L  AL+ DK      +
Sbjct: 68  SFIENGKHIEFDYAYITIHGAPGENGIMQGYFDLIHLPYSTSSVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SI           + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVNVADSILLRRGEEYNEEEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D+++IE ++DG E++ GV       +   A        +       +     +
Sbjct: 188 AFM--ESDEVMIEGFLDGTEISQGVYKTKDKSIVFPATEVVTSNEFFDYNAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271
            PA+I  D  K V       +  +   GI R D++   D     V   LEIN  PGMT  
Sbjct: 246 TPARINPDTAKRVAAETSRIYDILHANGIIRIDYIISKDKEGNDVINMLEINTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +E+L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|317970573|ref|ZP_07971963.1| D-alanine--D-alanine ligase [Synechococcus sp. CB0205]
          Length = 364

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/341 (24%), Positives = 142/341 (41%), Gaps = 46/341 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49
            ++ GG++ E  VS+ S    A+AL        +++    +D+            VLA  
Sbjct: 9   GLVFGGVTGEHAVSIRSANTVAAALRSGANAQRYRLDCFYIDQWGHWWPPAVADAVLAKG 68

Query: 50  KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            P                         +L   VLHG  GEDG +Q +  L+++P+  SG+
Sbjct: 69  TPAERSELPAAPLRPGFQGFPEGALDVELWVPVLHGPNGEDGTIQGLFSLMQVPFVGSGV 128

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135
           L SA+ MDK   K   ++ G+P  P   V+               +  +  P  IKP   
Sbjct: 129 LGSAVGMDKQAMKAAFAAAGLPQVPYACVDVQELEQQPEVLVQQLETQLGYPCFIKPANL 188

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI        +   L  ++  +    +        +E            V      
Sbjct: 189 GSSVGISKASNRAELMQGLALAAQHDPRMVVEQGIQARELECAVLGGQQMRSSVLGEICF 248

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y Y+ KYS   S  V+PA++P  + +  + +A  A +A+G  G++R DF ++  S 
Sbjct: 249 DADWYDYDTKYSDGKSHTVIPAEVPEALSERARTMAIAACRAVGASGLARVDFFYEQASG 308

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            ++  EIN  PG T  S++P + A  G    EL+  +V+ A
Sbjct: 309 ALWLNEINTLPGFTSQSMYPMLWAKTGLPLEELVHELVQLA 349


>gi|224536386|ref|ZP_03676925.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224521999|gb|EEF91104.1| hypothetical protein BACCELL_01260 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 324

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 145/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE +VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFQVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGGKAPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    +  D A+  +HG  GEDG +Q   +LL IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFQMNGRKVTFDFAYITIHGTPGEDGRLQGYFDLLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S++     +    D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KVFGVRIAESLVLRQGQSISDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +       ++LIE Y++G E+TCG        V            +       +   + +
Sbjct: 185 AFDEA--QEVLIEAYMEGTEVTCGCYKTKEKSVVFPITEVVTENEFFDYDAKYNGQVSEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  D+   +Q L    +  +G  GI R D++      KV  LE+N  PGMT  S  
Sbjct: 243 TPARLSDDLTHRIQTLTSAIYDILGASGIIRVDYIITA-GDKVNLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|161830077|ref|YP_001597183.1| D-alanyl-alanine synthetase A [Coxiella burnetii RSA 331]
 gi|189083040|sp|A9N8L3|DDL_COXBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|161761944|gb|ABX77586.1| D-alanine--D-alanine ligase [Coxiella burnetii RSA 331]
          Length = 372

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 89/352 (25%), Positives = 157/352 (44%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           ++VL GG S+E E+S+ S K   + L+ A + +S I +       L              
Sbjct: 7   ISVLCGGQSTEHEISIQSAKNIVNTLDAAKYLISVIFIVHVGRWYLIDQPEMFLAHSPDH 66

Query: 50  ------------------KP-------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                             KP             D  F ++HG  GEDG +Q +LELL +P
Sbjct: 67  LVKEGSARPITIAFGDAAKPWQSLNGDGRRYSADCVFPMVHGTQGEDGALQGLLELLNLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIK 131
           Y  + + +SA+ M+K  +K V+ + G+PV     ++        +        +    +K
Sbjct: 127 YVGANVQSSAVCMEKDLTKTVLRAGGIPVVDWHTLSPRDATEGVYQRLLDRWGTSELFVK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            +  GSS+  + +K +      + +     + D+L++E  + G E+ C V+G+ +   + 
Sbjct: 187 AVSLGSSVATLPVKTETEFTKAVKEVF--RYDDRLMVEPRIRGREIECAVLGNGAPKASL 244

Query: 192 I--AVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDF 248
               +P  D+YSY+ KY   N      +    + + K++Q++A  A + + C G++R DF
Sbjct: 245 PGEIIPHHDYYSYDAKYLDPNGATTTTSVDLSESVTKQIQQIAIDAFKMVHCSGMARVDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              P + KV   EIN  PG T +S++P+M   +G     LL  ++E A   R
Sbjct: 305 FVTP-NNKVLVNEINTIPGFTNISMYPKMWEASGLPCPNLLDQLIELA-IDR 354


>gi|258507143|ref|YP_003169894.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|257147070|emb|CAR86043.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus GG]
 gi|259648513|dbj|BAI40675.1| D-alanine-D-alanine ligase [Lactobacillus rhamnosus GG]
          Length = 360

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG S+ER VS+SSG    +AL   G + + ID+                     +
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 41  SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
            +           +  L+ D                  + F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R            P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +         +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V    +       +        P  +   +++ ++ ++      +G +   R DF     
Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|254966989|gb|ACT97529.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 331

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 138/322 (42%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSLRSGQGLYSFFDKERYNIYLVDVKGTDWHVALDNGETIEIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +   H+  D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMNGKHVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SI           +    I  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGINVADSILLRRGEAYDEEEIAKRIGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      ++++IE ++DG E++ G+   A   V   A        +       +     +
Sbjct: 188 AFM--ESNEVMIEGFLDGTEISQGIYKTAEKTVVLPATEVVTNNEFFDYDAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPV 271
            PA++  +  +EV +     +  +   GI R D++         KV  LEIN  PGMT  
Sbjct: 246 TPARLSPETAEEVAKTTSRIYDILHANGIIRIDYIISKDKDGKDKVNMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S  P+    AG   +++L  +V
Sbjct: 306 SFIPQQVRAAGLDIKDVLSEIV 327


>gi|161779870|gb|ABX79426.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYAVSLASATSALEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|313899544|ref|ZP_07833053.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312955651|gb|EFR37310.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 355

 Score =  148 bits (372), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 85/347 (24%), Positives = 144/347 (41%), Gaps = 53/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A++ GG SSE  VSL S  +    +    +++  I + +                     
Sbjct: 7   AIIFGGKSSEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYDGDVDGIEHDTWLC 66

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        ++ D  F +LHG  GEDG +Q + EL  IPY
Sbjct: 67  EEHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQGLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131
              G ++SA+ MDK  +  V+   G+   P + V              ++  +  P  IK
Sbjct: 127 VGCGHMSSAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189
           P   GSS GI  ++        +  +   +   ++++E  ++G E+   VMG+  L    
Sbjct: 187 PANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGS 246

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +     + F+ YE KY  ++S    PA+I   +++E + +A  A++A+ C+G++R D  
Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMF 306

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P    +   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 307 VTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352


>gi|328956371|ref|YP_004373704.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456695|gb|AEB07889.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 318

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/304 (30%), Positives = 143/304 (47%), Gaps = 10/304 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVDRS-VGLVLAHLKPDLAFNVL 58
           +AVL GG S ERE+S +SG++   AL+ AG+ +V  +D   S     +     D  F  L
Sbjct: 11  IAVLAGGTSPEREISFASGESVCRALKQAGYGRVETLDPADSGFLKEIESASFDAVFIAL 70

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG  GEDG +Q +L+ L IPYT SG+ ASA + DK  SK +    G+PV   + + R   
Sbjct: 71  HGAGGEDGTIQGVLDYLHIPYTGSGVRASACAADKDVSKIIFEHAGIPVARGVTLCRGDE 130

Query: 119 DSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
            +       +     +KP   GSSLG+ +I+    +P  + ++   +    +        
Sbjct: 131 LNPDSLVAELGKECFVKPAMNGSSLGVSLIRHPSELPKAVERAFESSDKVLIEQRLIGTE 190

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--THVLPAKIPLDIYKEVQRLAF 232
           I +      DA        + +     Y  +   ++    H +PA++P  I +    LA 
Sbjct: 191 ISVGVLGGRDAKALPVVEIMGQEGTDFYNKEVKYIDPALVHRIPARLPTGICETAGALAL 250

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            AH+A+GC G SRSDF+          LE N  PGMT  S+FP+   + G +F E    M
Sbjct: 251 GAHRALGCYGFSRSDFIVTEEG--PVILETNTIPGMTEASLFPDEIRHCGRTFAEACDEM 308

Query: 293 VEDA 296
           +  A
Sbjct: 309 IMLA 312


>gi|291302440|ref|YP_003513718.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
 gi|290571660|gb|ADD44625.1| D-alanine/D-alanine ligase [Stackebrandtia nassauensis DSM 44728]
          Length = 364

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 89/358 (24%), Positives = 152/358 (42%), Gaps = 62/358 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           +AV++GG S E  VS +S     +AL+   ++V  + + ++   +    +          
Sbjct: 6   VAVVLGGRSVEHPVSCASAAGVIAALDPEQYEVVAVGITQAGQWLSVDARSAKLALGDGN 65

Query: 51  -------------------------------------PDLAFNVLHGNFGEDGLVQAILE 73
                                                 D+ F VLHG +GEDG +Q +LE
Sbjct: 66  VPEISADSGQHVVLAADPTMKDVAITDAAGGARVLSDVDVVFPVLHGAYGEDGTIQGLLE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVI 130
           + ++PY  S +L+SA SMDK   K+++ + G+PV   +++ R    S+     +  P  +
Sbjct: 126 MADVPYVGSNVLSSAASMDKDFMKRLLKAEGIPVGDYVVLKRDQTLSEAEKQRLGLPVFV 185

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDV 189
           KP + GSSLGI  +     +   +  + +     ++L+E    G  EL CGV+       
Sbjct: 186 KPSRAGSSLGISKVTDWDDLDKAIATARAV--DPKVLVEAAFTGVRELECGVLEREDGGA 243

Query: 190 TEIAVPKSD-------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +   P          ++ +E KY +  S + L   +P    + ++ LA      + C  
Sbjct: 244 PDTTPPFEVLIAGTEGWFDFEAKYLASGSPYDLAPDLPEGTAERIRELAARVFTVMDCSD 303

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ++R DF        V+  EIN  PG+TP S  P   A AG  + EL+  +V  A+  R
Sbjct: 304 LARVDFFL-ASDGTVYVNEINTMPGLTPGSGVPVAWANAGVDYPELVARLVRLAA-NR 359


>gi|325860222|ref|ZP_08173347.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|327312693|ref|YP_004328130.1| D-ala D-ala ligase N-terminal domain-containing protein [Prevotella
           denticola F0289]
 gi|325482309|gb|EGC85317.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           CRIS 18C-A]
 gi|326944185|gb|AEA20070.1| D-ala D-ala ligase N-terminal domain protein [Prevotella denticola
           F0289]
          Length = 332

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VS+ SG+   S  +   + +  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWHVELPDGSLAPIDKNDF 67

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +      + D A+  +HG  GE+G++Q   +LL +PY+ SG+L  A++ DK      +
Sbjct: 68  SFVMGGRRCEFDYAYITIHGQPGENGVMQGYFDLLHLPYSTSGVLVEAMTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  SI           + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGVKVADSILLRRGEPYDEAEIERRLGMPCFVKPAADGSSFGVSKVKNADQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D++++E ++DG+E++ GV    +  V   A        +       +     +
Sbjct: 188 AFM--ESDEVMVEGFMDGMEISQGVYKTKAKAVVFPATEVVTSNEFFDYNAKYNGQVQEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMTPV 271
            PA++  +  + V       +  +   GI R D++   D     V   LEIN  PGMT  
Sbjct: 246 TPARMSPETARRVAAETSRIYDILHANGIIRIDYIISKDKDGNDVINMLEINTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +E+L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKEVLSEIVEN 329


>gi|312868929|ref|ZP_07729110.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
 gi|311095547|gb|EFQ53810.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus oris
           PB013-T2-3]
          Length = 377

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/342 (23%), Positives = 142/342 (41%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------------ 36
           +A+L GG SSE +VS  S      A++   + VS                          
Sbjct: 7   VALLFGGNSSEHDVSKRSAHNIYDAMDKDKYDVSLFMFTKDGILLDNAYSQRIFDGEPED 66

Query: 37  ----------DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                     D+DR +  ++A  +    D  + V+HGN GEDG +Q + +LL+ PY  SG
Sbjct: 67  QVVADAYQHMDLDRPLAPIMALNELEAVDFFYPVIHGNLGEDGTIQGLFKLLKKPYVGSG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASALS DK  +K++++  G+   P +               +  +     IKP + GS
Sbjct: 127 ISASALSFDKDLTKKMLNEAGIRNTPYVLLTPENQAEYSWGRLEEELGNLIFIKPARQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +   +     L  +  ++                   +  +  +     AV   
Sbjct: 187 SVGIHRVTNAEEYAAALKDAFKYDFKVLAEKGLDRPQEIEISILGNEHPVASKLGAVRVP 246

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   +    +           LP K+P  +  E+  +A  A++ +G +G+SR DFL D  
Sbjct: 247 ESDPFYDYENKFVDASGVVFELPVKLPQYLTDEITEMALKAYRVLGMKGLSRIDFLVD-S 305

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M   +G S+ +L+  ++E 
Sbjct: 306 NNIPYLSEPNTLPGFTNISLYPQMWEVSGISYSDLIDRLIEL 347


>gi|329956080|ref|ZP_08296851.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
 gi|328524839|gb|EGF51893.1| D-ala D-ala ligase protein [Bacteroides clarus YIT 12056]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMQGPDWHVQLPDGTKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLSGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KTFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNTKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E +++G+E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--KEVLVEAFMEGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322


>gi|297623804|ref|YP_003705238.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
 gi|297164984|gb|ADI14695.1| D-alanine/D-alanine ligase [Truepera radiovictrix DSM 17093]
          Length = 351

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/339 (27%), Positives = 146/339 (43%), Gaps = 45/339 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S E EVSL+S ++  +A   A F V+ + + R   L+                 
Sbjct: 17  LLCGGRSDEHEVSLASARSVLAAAGSA-FAVTPLVIGRDGRLLPEAASRRVLCTPVPDTP 75

Query: 46  --------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                         L     D+ F +LHG FGEDG VQ +L+LL +P+  S +L SA+ M
Sbjct: 76  PDALTATGALELSALEPGAFDVVFPLLHGPFGEDGSVQGLLKLLGLPFVGSDVLGSAVGM 135

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------HLISPPYVIKPLKGGSSLGIIV 143
           DK   K V ++ G+P  P  L+ R                   P  +KP   GSS+GI  
Sbjct: 136 DKGMMKAVFAAHGLPQVPYRLMTRSAWRRDPEGVLASLMDFGLPVFVKPANLGSSVGISR 195

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYS 201
               + +   L  ++ ++    L+        EL  GV         V      +S FY 
Sbjct: 196 ADDPEGLREALETAARYDR-RVLVERGLARARELEVGVLGNDAPRASVVGEIRYESLFYD 254

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY+   +  ++PA IP ++    Q LA  A +A+   G++R DF       +++  E
Sbjct: 255 YSTKYTEGEAEPLIPAPIPPELAARCQALALEAFRAVDAAGLARVDFFL--AGGELYLNE 312

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           IN  PG T  S+FP++   +G  +  L+  ++  A   R
Sbjct: 313 INTMPGFTRTSMFPKLWEASGVPYDALITQLIALALEAR 351


>gi|219684734|ref|ZP_03539677.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
 gi|219672096|gb|EED29150.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           garinii PBr]
          Length = 361

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 156/342 (45%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAVPKS 197
           I V        ++     +  +   +LIE++++  E+ C              EI V   
Sbjct: 187 INVAYS--ESQIEFFIEEALKYDLTILIEKFIEAREIECSVIGNEKIKIFSPGEIVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA++  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAQLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            K++  EIN  PG T +S+F +M ++ G  F++LL  ++  A
Sbjct: 305 GKIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLLDNLINYA 346


>gi|150003135|ref|YP_001297879.1| D-alanyl-alanine synthetase A [Bacteroides vulgatus ATCC 8482]
 gi|254882416|ref|ZP_05255126.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|294778334|ref|ZP_06743758.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|319640482|ref|ZP_07995204.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
 gi|166198472|sp|A6KXU3|DDL_BACV8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149931559|gb|ABR38257.1| D-alanine--D-alanine ligase [Bacteroides vulgatus ATCC 8482]
 gi|254835209|gb|EET15518.1| D-Ala-D-Ala ligase [Bacteroides sp. 4_3_47FAA]
 gi|254967040|gb|ACT97556.1| putative D-alanine-D-alanine ligase [uncultured organism]
 gi|294447810|gb|EFG16386.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides vulgatus
           PC510]
 gi|317387969|gb|EFV68826.1| D-alanine-D-alanine ligase [Bacteroides sp. 3_1_40A]
          Length = 324

 Score =  147 bits (371), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S        + D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKQFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +    +     + I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE ++ G E+TCG    +  +V            +       +  S  +
Sbjct: 185 AF--EESDEVMIEAFMKGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S  
Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|18476138|gb|AAK58489.1| D-alanine-D-serine ligase VanC3 [Enterococcus casseliflavus]
          Length = 350

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVV------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
              G+  SAL M+K    Q        S+  + +                   P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|218131975|ref|ZP_03460779.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
 gi|217985851|gb|EEC52191.1| hypothetical protein BACEGG_03598 [Bacteroides eggerthii DSM 20697]
          Length = 324

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR-SV 42
           +A+  GG +SE EVSL S +   S ++   + +  ++                 VDR   
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKTPVDRNDF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L   K   D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           +       ++L+E ++ G E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFKEA--REVLVEAFMQGTEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322


>gi|223889230|ref|ZP_03623818.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
 gi|223885263|gb|EEF56365.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 64b]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 161/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKETLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|49066399|gb|AAT49292.1| putative immunity protein [Prevotella nigrescens]
 gi|242332478|tpg|DAA06526.1| TPA_exp: NigB [Prevotella nigrescens]
          Length = 328

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + +  +D                 ++++  
Sbjct: 5   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYNIYIVDVKGTDWHVNLDNGHTAPINKNDF 64

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
               + +    D A+  +HG  GE+G++Q   EL+ IPY+   +LASAL+ DK    + +
Sbjct: 65  SFNNNGQTVFFDYAYITIHGRPGENGIMQGYFELVNIPYSTCDVLASALTFDKFVLNRYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S G+ V  SI           +    I  P  +KP   GSS G+  +K    +   L +
Sbjct: 125 KSYGIHVSESILLRLGETYNEREIAEKIGMPCFVKPATDGSSFGVSKVKNADQLAPALRK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +       ++++E ++DG+E+T G+       V            +       +     +
Sbjct: 185 AFM--ESSEVMVESFLDGVEITQGIYKTREKSVPFPITEVVTSNEFFDYNAKYNGEVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271
            PA+I  ++ ++V  +    +  +   GI R D++    +     +  LE+N  PGMT  
Sbjct: 243 TPARISKELAEKVTEVTSHIYDILHANGIIRIDYIITKDNDGNDVINMLEVNTTPGMTVT 302

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   + +L  +VE+
Sbjct: 303 SFVPQQVRAAGLDIKNVLSDIVEN 326


>gi|325912908|ref|ZP_08175285.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|329919818|ref|ZP_08276769.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
 gi|325477796|gb|EGC80931.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 60-B]
 gi|328937165|gb|EGG33593.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 1401G]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|309804050|ref|ZP_07698131.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
 gi|308163818|gb|EFO66084.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 11V1-d]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|199599636|ref|ZP_03213015.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
 gi|199589469|gb|EDY97596.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           rhamnosus HN001]
          Length = 360

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 141/341 (41%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG S+ER VS+SSG    +AL   G + + ID+                     +
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 41  SV--------GLVLAHLKPD------------------LAFNVLHGNFGEDGLVQAILEL 74
            +           +  L+ D                  + F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRIDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R            P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +         +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V    +       +        P  +   +++ ++ ++      +G +   R DF     
Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           ++ V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 NKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|312871251|ref|ZP_07731349.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093265|gb|EFQ51611.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 3008A-a]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/345 (25%), Positives = 155/345 (44%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D+              +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDNAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I K V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVKTVRSQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|167764293|ref|ZP_02436420.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
 gi|167698409|gb|EDS14988.1| hypothetical protein BACSTE_02678 [Bacteroides stercoris ATCC
           43183]
          Length = 324

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E ++DG+E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322


>gi|295426234|ref|ZP_06818895.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
 gi|295064079|gb|EFG55026.1| D-alanine-D-alanine ligase A [Lactobacillus amylolyticus DSM 11664]
          Length = 360

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/340 (25%), Positives = 149/340 (43%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG    +A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYNAIDKDKFDVHPIWITNDGYFADEKESFKVLKDPKYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +  +L+ P+    ILA+A+
Sbjct: 67  VKNPHKVTNISNLIELANLPEIDIFFPIVHGNLGEDGSLQGLFRILDKPFVGDDILAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNR-----------FTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I V R                   +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWIAVKRRDYDDKNSDKLNYDKVAEKLGKDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L ++    + D++L+E+ V G E+   V+G+ +  V+ +    + 
Sbjct: 187 VGVSHVTNADEYKKALDEAF--KYDDKVLVEETVPGTEVETAVLGNDNPIVSGVGQIINA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA++P  I ++V+  A   +QA  C G++R D +  P  
Sbjct: 245 AGSWYSYENKYDDNSTSKLQIPAELPNRIVEKVRSNALKVYQATECSGMARIDSMLTP-D 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEAAGIPYTELITRLIE 343


>gi|317474425|ref|ZP_07933699.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
 gi|316909106|gb|EFV30786.1| D-alanine-D-alanine ligase [Bacteroides eggerthii 1_2_48FAA]
          Length = 324

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 88/321 (27%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDR-SV 42
           +A+  GG +SE EVSL S +   S ++   + +  ++                 VDR   
Sbjct: 5   IAIACGGDTSEFEVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGTKAPVDRNDF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L   K   D  +  +HG  GEDG +Q  L++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLGGEKVVFDFVYITIHGTPGEDGRLQGYLDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVKTREEIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           +       ++L+E ++ G+E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFKEA--REVLVEAFMQGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGAAGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLDIKDVMTDIIEN 322


>gi|224532828|ref|ZP_03673443.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
 gi|224512217|gb|EEF82603.1| D-alanine--D-alanine ligase [Borrelia burgdorferi WI91-23]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/342 (24%), Positives = 160/342 (46%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYYIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +                 +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|53711781|ref|YP_097773.1| D-alanyl-alanine synthetase A [Bacteroides fragilis YCH46]
 gi|81383704|sp|Q64Z37|DDL_BACFR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|52214646|dbj|BAD47239.1| D-alanine--D-alanine ligase [Bacteroides fragilis YCH46]
          Length = 324

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFINGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S            D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + S    ++++IE ++ G ELTCG        V            +       +     +
Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|309806919|ref|ZP_07700903.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|309807354|ref|ZP_07701321.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|312872728|ref|ZP_07732793.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
 gi|312874059|ref|ZP_07734094.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|308166686|gb|EFO68881.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 03V1-b]
 gi|308169403|gb|EFO71454.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 01V1-a]
 gi|311090399|gb|EFQ48808.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2052A-d]
 gi|311091770|gb|EFQ50149.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 361

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 86/345 (24%), Positives = 154/345 (44%), Gaps = 48/345 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPRTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVAKWISIKRFEYDDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLTTDG 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            KV + E+N  PG T +S++P++   AG  + EL+  +++ A   
Sbjct: 305 HKVIFNELNALPGFTNISMYPKLFEEAGIPYAELITKLLDYAVAR 349


>gi|161779852|gb|ABX79413.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 144/343 (41%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYAVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q   + GV   P+I         R           P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAEAIGVQSAPTILLTNQDNQQRQIEAFIQTHDFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF     
Sbjct: 244 SLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345


>gi|325571358|ref|ZP_08146858.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
 gi|325155834|gb|EGC68030.1| D-alanine--D-alanine ligase [Enterococcus casseliflavus ATCC 12755]
          Length = 350

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 143/343 (41%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED--AGFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+     + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYAVSLASATSAIEALQSSPDDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+I                     P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQDQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345


>gi|227877871|ref|ZP_03995887.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256844272|ref|ZP_05549758.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256849329|ref|ZP_05554762.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|262047654|ref|ZP_06020608.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|293380562|ref|ZP_06626621.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|312976971|ref|ZP_07788720.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
 gi|227862533|gb|EEJ70036.1| D-alanine-D-alanine ligase [Lactobacillus crispatus JV-V01]
 gi|256613350|gb|EEU18553.1| D-alanine-D-alanine ligase [Lactobacillus crispatus 125-2-CHN]
 gi|256714105|gb|EEU29093.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-1A-US]
 gi|260572054|gb|EEX28620.1| D-alanine-D-alanine ligase [Lactobacillus crispatus MV-3A-US]
 gi|290922876|gb|EFD99819.1| D-ala D-ala ligase [Lactobacillus crispatus 214-1]
 gi|310896299|gb|EFQ45364.1| D-alanine--D-alanine ligase [Lactobacillus crispatus CTV-05]
          Length = 360

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG+    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGRNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNADEYTAALKEAF--KYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   V+  A   + A  C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|320094156|ref|ZP_08025969.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319978958|gb|EFW10488.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 378

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 94/365 (25%), Positives = 154/365 (42%), Gaps = 70/365 (19%)

Query: 3   VLMGGISSEREVSLSS------------------------------------------GK 20
           ++ GG SSE EVS ++                                          G+
Sbjct: 11  IVFGGRSSEHEVSCATAAGILRAIDRDKWDVVPLGITKDGQWVPASDDPALLEFKDGKGQ 70

Query: 21  ACAS------------ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           +  +            +L +  +     D    V       + D+   +LHG +GEDG +
Sbjct: 71  SVEAGATRVALTPGGGSLVELSYDGDPADPGARVVGARDLGRVDIVLPLLHGPYGEDGTI 130

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSK--------QVVSSCGVPVCPSILVNRFTMDS 120
           Q +LE+ E+ Y   G+ +SA+SMDK  +K         V     +            ++ 
Sbjct: 131 QGLLEMAEVRYVGCGVASSAVSMDKHLTKVVLAGAGIDVGRWELITPLQWEADQGACLER 190

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +KP + GSS+GI  ++  + +   +    + NH  ++++E  V G E+ CG
Sbjct: 191 AAALGFPVFVKPCRAGSSVGISKVESREGL--AVAVKEAQNHDPRVIVEAGVVGREVECG 248

Query: 181 VMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           V+G  S   +      EI VP  +FY YE KY       V PA++     + V+  A  A
Sbjct: 249 VLGGRSDWRSATAPLGEIEVPDGEFYDYEHKYVDDVVGLVCPAEVAPAYEERVRETALRA 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             A+ C G++R DF  D  S  V   E+N  PG TP+S+FP+M A AG  +  L+  ++E
Sbjct: 309 FDALECEGLARVDFFLDEDSGTVLVNEVNTMPGFTPISMFPQMWAAAGVDYPSLIDALLE 368

Query: 295 DASCL 299
           +A+  
Sbjct: 369 EAAAR 373


>gi|257867515|ref|ZP_05647168.1| ligase [Enterococcus casseliflavus EC30]
 gi|257873844|ref|ZP_05653497.1| ligase [Enterococcus casseliflavus EC10]
 gi|161779858|gb|ABX79418.1| VanC2/3 [Enterococcus casseliflavus]
 gi|257801571|gb|EEV30501.1| ligase [Enterococcus casseliflavus EC30]
 gi|257808008|gb|EEV36830.1| ligase [Enterococcus casseliflavus EC10]
          Length = 350

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDTI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|294791342|ref|ZP_06756499.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
 gi|294457813|gb|EFG26167.1| D-alanine--D-alanine ligase [Scardovia inopinata F0304]
          Length = 385

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 94/376 (25%), Positives = 157/376 (41%), Gaps = 81/376 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +A+L GG + E  +S  S  +   AL+ + F+   I + ++   +   + P         
Sbjct: 9   IAILYGGRADEHPISCISAGSVLRALDTSKFEPVPIGITKNGTWITDGVDPREWNLGSGA 68

Query: 52  ----------------------------------------DLAFNVLHGNFGEDGLVQAI 71
                                                   D  F VLHG +GEDG +Q +
Sbjct: 69  LPAVEETASSRRVVLDPSAGSEGFLVFNRQTGKNESLGHIDAVFPVLHGPYGEDGTIQGL 128

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------- 124
           LE++ IPY   G+ ASA  MDK  +K ++S  G+ V P I ++  +              
Sbjct: 129 LEMMGIPYVGCGVFASAACMDKHYTKVLLSQAGIQVAPGITLDTRSYHRDSHFVADGESL 188

Query: 125 ---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQ 170
                      P  +KP + GSS G+  +   Q   L + +       + NH  ++LIEQ
Sbjct: 189 LQAVDRAGLQYPLFVKPSRAGSSFGVTKVDFSQDKSLLMNRLSAAVFEAANHDWRVLIEQ 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVP---------KSDFYSYELKYSSLN-STHVLPAKIP 220
            +DG E+ C V+      + E ++P            FY ++ KY     S   +PA +P
Sbjct: 249 GIDGREIECAVLAARPGSLPETSLPGEVVLDAPDDDTFYDFDSKYMDSQASHVEVPAHLP 308

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + ++V++ A  A  A+  +G+SR D        +V   EIN  PG TP+S++ +    
Sbjct: 309 QKLLEKVRQTAGQAFLAVDGQGLSRVDTFVTA-DGQVLVNEINTMPGFTPISMYAKAWEA 367

Query: 281 AGYSFRELLLWMVEDA 296
            G S+REL+  +++ A
Sbjct: 368 MGLSYRELISRLIDGA 383


>gi|305664422|ref|YP_003860709.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
 gi|88708439|gb|EAR00675.1| D-alanylalanine synthetase [Maribacter sp. HTCC2170]
          Length = 327

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 90/321 (28%), Positives = 144/321 (44%), Gaps = 30/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++MGG SSE ++SL SG      L+   ++  +I +                    D 
Sbjct: 5   VAIIMGGYSSEYKISLKSGNVVHDYLDKEKYERYRIHIFKQKWVYVDDVNAEHEVNKDDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN +HG  GEDGL+QA  ELL IP T  G   +AL+ +K     V+
Sbjct: 65  SIQVNNEKIVFDCVFNAIHGTPGEDGLMQAYFELLGIPQTSCGYYQAALTFNKRDLLSVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+   PS  +N     ++  I      P  +K  K GSS GI  + +   +   +  
Sbjct: 125 KPYGIKSAPSYYLNLGDEINEDAIIEQVGLPCFVKANKAGSSFGISKVNEKDRLKEAI-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHV 214
             ++   D+++IE ++DG E++ GV+                   +    +     S  +
Sbjct: 183 EFAYKEDDEIIIEGFLDGTEVSVGVIKYKGETKVLPITEIVTENDFFDYEAKYEGKSQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I     K V + A  A+  +   G SRS+F+F  +  + F LE+N  PG+T  SI 
Sbjct: 243 TPARISSRQEKNVIQAAKRAYDVLKMTGFSRSEFIF--IGDEPFMLEMNTTPGLTTESIL 300

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+ A  AG S  EL    +E+
Sbjct: 301 PQQAGEAGISLSELFGGAIEE 321


>gi|328956666|ref|YP_004374052.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
 gi|328672990|gb|AEB29036.1| D-alanine--D-alanine ligase [Carnobacterium sp. 17-4]
          Length = 363

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/349 (23%), Positives = 151/349 (43%), Gaps = 59/349 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           ++ GG S+E ++S+ +  +    +    ++V  I + +S   V                 
Sbjct: 5   LVYGGKSAEHDISILTAFSIIKEVYYDYYEVEPIYITKSGQWVKGAIVKQANEVKDSDAL 64

Query: 46  ---------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                      L      + F VLHG  GEDG VQ + E++ +P
Sbjct: 65  KLTISDSSKFATDENQNSEGILVQPSDLKEENA-VIFPVLHGPNGEDGTVQGLFEVIGMP 123

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYV 129
           Y  +G+LASA  MDK+ SKQ+    G+P  P + V +              +  +  P  
Sbjct: 124 YVGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKESVFKHCEGTLFYPMY 183

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP   GSS+GI   +    +   +  +    +  ++++EQ ++  E+   ++G+  + +
Sbjct: 184 IKPANLGSSVGISKAENRDELIEAIELAL--RYDRRVVVEQGIEAREIEVAILGNDDIHI 241

Query: 190 TEIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +         DFY YE KY +      +PA +P D+   ++  A  A QA+   G+SR D
Sbjct: 242 SVPGELVKTVDFYDYESKYLNNEVVLQIPALVPEDVNTRLREYAVRAFQALDGSGLSRCD 301

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F     + ++F  E+N  PG T  S++P +    G ++ +L+  +++ A
Sbjct: 302 FFLT-SNDELFINEVNTMPGFTQFSMYPSLWKNTGLNYGDLVEELIQLA 349


>gi|161779881|gb|ABX79433.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGITPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|319937485|ref|ZP_08011890.1| VanG2 [Coprobacillus sp. 29_1]
 gi|319807325|gb|EFW03934.1| VanG2 [Coprobacillus sp. 29_1]
          Length = 353

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 93/341 (27%), Positives = 148/341 (43%), Gaps = 50/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE  VSL S  +    L+   + +  I + +                    
Sbjct: 5   IAILFGGHSSEYSVSLESAYSVLCHLDHDKYNIYMIGITKDGKWYHFDGDILDIQNDTWW 64

Query: 46  -----------------LAHLK--------PDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                            L  +K         D  F +LHG  GEDG VQ ++ L  IP  
Sbjct: 65  QHPLHEVTISPDPTKHALIEMKTDHFILVHIDAIFPILHGKNGEDGTVQGLIALSGIPLI 124

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPLKG 135
              + +SAL MDK R+ Q+V+  G+ V  S ++           +      P  +KP+K 
Sbjct: 125 GCSVASSALCMDKERAHQIVNHAGIRVPKSFVLTSMQDYQLQKNNFLKLSLPLFVKPVKA 184

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193
           GSS GI  +     I   +  +    + +++LIE+ ++G E+ C VMG   L     +  
Sbjct: 185 GSSYGITKVTHLDEIEKAIEFAF--TYDNEILIEENIEGFEVGCAVMGTDQLILGRVDEI 242

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +  KY+  +S   +PA+I   I K +Q  A + ++A+GC+  +R D    P 
Sbjct: 243 ELSQGFFDFTEKYTLKSSQIHMPARIDSQIEKRIQETAQMIYKALGCQVFARVDMFLTPE 302

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ + E+N  PG T  S FP M    GYSF  +L  ++E
Sbjct: 303 -NEIVFNEVNTIPGFTSHSRFPSMLQGIGYSFENILDKLIE 342


>gi|302379949|ref|ZP_07268428.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
 gi|302312175|gb|EFK94177.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           ACS-171-V-Col3]
          Length = 350

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 147/334 (44%), Gaps = 44/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S+E EVS++S +   + L    + V+ I V R    +                 
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRDKKFIMKENITEEIKSDEELIL 66

Query: 46  -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                        ++ + P+  + F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146
           MDK  +  +     +P    +++ +    +   I         +KP   GSS+G++  + 
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203
           ++ +   +  +    +  ++L+E+ + G EL   VMG+ +          +   +F+ Y+
Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  EIN
Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302

Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
             PG+TP S+FP +       S  E+   +++ A
Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336


>gi|87125524|ref|ZP_01081369.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
 gi|86166824|gb|EAQ68086.1| D-alanine--D-alanine ligase [Synechococcus sp. RS9917]
          Length = 344

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 48/341 (14%)

Query: 4   LMGGISSEREVSLSSGKACASALE----DAGFKVSQIDVDRSVGLVLA------------ 47
           + GG S E  +++ S      AL        F V    +DR+     A            
Sbjct: 2   VFGGASGEHTIAIRSATTVIQALRSGRNRERFDVVPFYIDRAGRWWPAVVAESVLQNGVA 61

Query: 48  ---------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    ++ + VLHG  GEDG VQ +  L+  P+  +G+L 
Sbjct: 62  AEEADLPQPLPAPGFSQLPAGSETVEIWYPVLHGPNGEDGTVQGLFTLMAKPFVGAGVLG 121

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKG 135
           SA+ MDK+  K   ++ G+     + ++  ++++              +  P  +KP   
Sbjct: 122 SAMGMDKLAMKAAFAAAGLAQVAYVGLDASSLNNAATRATLLERIETELGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++  +H   +        +E     +      V      
Sbjct: 182 GSSVGISKVRNRAELERGLAVAAELDHRLVVEQGVQARELECAVLGVRQLKASVVGEIRF 241

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +D+Y Y+ KYS   S  ++PA I      +VQ +A  A + +G  G +R DF +D    
Sbjct: 242 DADWYDYKTKYSDGLSHTLIPAPISAARQADVQAMALEACRVLGVVGQARVDFFYDATQE 301

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +++  E+N  PG T  S++P +   +G    +L+  +VE A
Sbjct: 302 RLWINEVNTLPGFTSQSMYPMLWEASGLPLEDLVAQLVESA 342


>gi|315654076|ref|ZP_07906992.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
 gi|315488772|gb|EFU78418.1| D-alanine-D-alanine ligase A [Lactobacillus iners ATCC 55195]
          Length = 366

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 152/342 (44%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDEDSRKVLEDPSYQ 72

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L ++    + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 193 VGISHVTSAADYEKALAEAF--KYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 309

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351


>gi|332669024|ref|YP_004452032.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
 gi|332338062|gb|AEE44645.1| D-alanine/D-alanine ligase [Cellulomonas fimi ATCC 484]
          Length = 323

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/309 (27%), Positives = 135/309 (43%), Gaps = 20/309 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV+ GG S E EVSL+S  +   AL    + V  + + R         +P         
Sbjct: 8   VAVVGGGQSCEHEVSLASAASVVGAL-TDRYDVVPLTITRDGTWCDEVGRPVGLARAVQT 66

Query: 52  ----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                    ++HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V  + GV  
Sbjct: 67  LGTCAAVVPMVHGPRGEDGTLAALCELAGVPYVGSGVGAGALAMDKWATKLVAQAVGVAT 126

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
            P  L+      + ++   P V+KP+  GSS G+ +++    +   L  +       ++L
Sbjct: 127 APGRLL-TAATAAAYVFEHPVVVKPVAAGSSHGVTLVRDAGGLRPALDAALRL--DGRVL 183

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY-ELKYSSLNSTHVLPAKIPLDIYKE 226
           +E  V+G E+   V+      V    +       +         +   +PA +P    + 
Sbjct: 184 VEDVVEGREVDVAVLATGDGHVVAPLLEVVVDGLFDHAAKYGGTADLRVPADVPEADAQA 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A     A+GC G++R DF            E+N  PG+T  S  P M A AG S+ 
Sbjct: 244 LRDAAVRVFDALGCAGVARVDFFLTADG--PVLNEVNTTPGLTEHSQVPRMFAAAGLSYP 301

Query: 287 ELLLWMVED 295
           +LL  +V D
Sbjct: 302 DLLDRLVRD 310


>gi|254967064|gb|ACT97570.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 344

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      +++++E ++DG ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTXXXTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|237715323|ref|ZP_04545804.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|237719674|ref|ZP_04550155.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262405164|ref|ZP_06081714.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|294643536|ref|ZP_06721342.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294807043|ref|ZP_06765862.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|298482427|ref|ZP_07000613.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
 gi|229444632|gb|EEO50423.1| D-alanyl-alanine synthetase A [Bacteroides sp. D1]
 gi|229450943|gb|EEO56734.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_2_4]
 gi|262356039|gb|EEZ05129.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
 gi|292641111|gb|EFF59323.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CC 2a]
 gi|294445742|gb|EFG14390.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295088098|emb|CBK69621.1| D-alanine--D-alanine ligase [Bacteroides xylanisolvens XB1A]
 gi|298271406|gb|EFI12981.1| D-alanine--D-alanine ligase [Bacteroides sp. D22]
          Length = 324

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSISDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +       ++L+E ++DG ELTCG        V            +       +     +
Sbjct: 185 AFGEA--QEVLVEAFMDGTELTCGCYKTKEKTVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTTTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|161779873|gb|ABX79428.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/343 (23%), Positives = 141/343 (41%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVV------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
              G+  SAL M+K    Q        S+  + +                   P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|257877594|ref|ZP_05657247.1| ligase [Enterococcus casseliflavus EC20]
 gi|257811760|gb|EEV40580.1| ligase [Enterococcus casseliflavus EC20]
          Length = 350

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 150/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ +SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345


>gi|161779867|gb|ABX79424.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 150/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKQKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+ +SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVASSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             +  F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLEDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLILA 345


>gi|229550951|ref|ZP_04439676.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|258538338|ref|YP_003172837.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
 gi|229315776|gb|EEN81749.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus LMS2-1]
 gi|257150014|emb|CAR88986.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus Lc 705]
          Length = 360

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 80/341 (23%), Positives = 140/341 (41%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG S+ER VS+SSG    +AL   G + + ID+                     +
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 41  SV--------GLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILEL 74
            +           +  L+                   D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R            P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +         +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGIADVF--RFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           V    +       +        P  +   +++ ++ ++      +G +   R DF     
Sbjct: 241 VHSGWYDFKHKFQAGYTDFITPPKNLDESVHQAMKDVSLQTMDVLGLQNYGRIDFF--AN 298

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + V+ +E N  PGMTP+S+ P+ A   G  + +L++ ++ 
Sbjct: 299 DKGVWVIEANNLPGMTPLSLLPQEAEADGVEYGDLVMDIIN 339


>gi|311745473|ref|ZP_07719258.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
 gi|126578026|gb|EAZ82246.1| D-alanine--D-alanine ligase [Algoriphagus sp. PR1]
          Length = 328

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/323 (24%), Positives = 141/323 (43%), Gaps = 30/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG + E  +SL S       +    ++V +I +                    D 
Sbjct: 5   IALVTGGYTGESVISLKSAAVVEKTINRELYEVYKILIYPGDWHFLSVSGEKIPVDLNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +    +  D  FN+LHG+ GEDG +    +++ IPYT    L SA++M+K  +K VV
Sbjct: 65  SIRIGDDKITFDGVFNILHGSPGEDGKLAGYFDMIGIPYTTCDQLTSAITMNKGYTKAVV 124

Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      +      +      Q  ++ P  IKP  GGSS+G+  +K    +   L 
Sbjct: 125 DDIEELHIAKSIQLFDNSSLNQNRIQEELTLPLFIKPNNGGSSIGMSKVKTWDELGEALD 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNST 212
           ++   +   Q+L+E++V G E + GV               V   +F+ +E KY +  + 
Sbjct: 185 KAF--DEDSQVLVEEFVSGREFSIGVFKGKGQVTVLPATEIVSSKEFFDFEAKYVAGVTN 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P ++  +    V R+A   ++ + C+G  R D+     S K +++EIN  PG T  S
Sbjct: 243 EITPGRMNEEEISRVNRIAAKIYEKLNCKGSVRIDYFLQEGSGKFYFIEINTVPGQTETS 302

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           +  +     G   R+    ++E+
Sbjct: 303 LISQQVRAYGMEVRDFYTQLIEE 325


>gi|216264818|ref|ZP_03436810.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
 gi|215981291|gb|EEC22098.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           burgdorferi 156a]
          Length = 361

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 162/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGVWYLLDSVSDPPKPINTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ ++ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEINVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +              + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFDIPLVPFIGFRQHDYFLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESFIKEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFLA++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLAYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M +  G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFAKMCSNDGLQFKDLVDNLIDYA 346


>gi|87302973|ref|ZP_01085777.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
 gi|87282469|gb|EAQ74428.1| D-alanine--D-alanine ligase [Synechococcus sp. WH 5701]
          Length = 373

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/354 (24%), Positives = 148/354 (41%), Gaps = 60/354 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAH 48
           + ++ GG S E  VS+ S       L +      ++V    +DR            VL+ 
Sbjct: 8   VGLVFGGASDEHAVSIRSAITVVGGLREGENLLRYRVRPFYIDRRGRWWGPELAEAVLSS 67

Query: 49  LKP------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
            +P                              D+ F VLHG  GEDG +Q +  L+++P
Sbjct: 68  AEPAPDEQLNETAADQPLGGAGFQGLPPEAAGVDVWFPVLHGPNGEDGTIQGLFALMQVP 127

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPYV 129
           +  SG+L SAL MDK   K   ++ G+P  P   V    +           +  +  P  
Sbjct: 128 FVGSGVLGSALGMDKQAMKAAFAAAGLPQVPYAAVQAADLRHDPEGLLQRLERDLGYPCF 187

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI       S+   L  ++      +L++EQ V   EL C V+G  +   
Sbjct: 188 VKPANMGSSVGISKASDRSSLLQGLELAA--ALDPRLVVEQGVTARELECAVLGQGAAAG 245

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHV-------LPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             +         +   +    + +        +PA++P  + + ++ +A  A  A+   G
Sbjct: 246 GGLKASVVGEIRFSADWYDYETKYTAGLSSTVIPAELPEAVSERLRAMALQACAAVATEG 305

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++R DF +D  +++++  EIN  PG T  S++P + A +G    +L+  +VE A
Sbjct: 306 LARVDFFYDEAAQRLWLNEINTLPGFTSQSMYPMLWAASGVPLVDLVHQLVESA 359


>gi|148256670|ref|YP_001241255.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. BTAi1]
 gi|190359115|sp|A5EMF5|DDL_BRASB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146408843|gb|ABQ37349.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 367

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 75/352 (21%), Positives = 137/352 (38%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG S+E +VS +S      +L+ + + V+ I +      VLA             
Sbjct: 8   VAILFGGRSAEHDVSRASAANIFRSLDASRYAVTLIGITPEGRWVLADAVNARTAQALTV 67

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D+ F VLHG  GEDG +Q  LEL ++ Y
Sbjct: 68  PPDGPQIVLLPAGQGRALVLGDGAAAPRELTFDVIFPVLHGPNGEDGTMQGALELADVAY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-----RFTMDSQHLISPPYVIKPLK 134
             + ++ SA +MDK  +K+++   G+P+ P + +       +      +      IKP  
Sbjct: 128 VGARVMGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAAAPVSYEDAVHAVGCSELFIKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------ 188
            GSS+GI   +  Q         +    G  L+        E+ C V+  A  +      
Sbjct: 188 LGSSVGISKARTPQEF-AAACDLALRFDGKILIERCISPVREIECAVLEHADGEVKASEL 246

Query: 189 -VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                A     +        +  ++  +PA++   + + ++++A      + C  ++R D
Sbjct: 247 GEIVPASSHGFYSYAAKYTDASGASLHVPAQVEPGLAQRIRKMATEVFGVLCCESLARVD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           F       +V+  E+N  PG T +S++P+M    G     L+  ++  A   
Sbjct: 307 FFV--HGEEVYVNEVNTLPGFTNISMYPKMWEATGLPQPALMDALIAHALAR 356


>gi|124009981|ref|ZP_01694645.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
 gi|123984003|gb|EAY24386.1| D-alanine--D-alanine ligase [Microscilla marina ATCC 23134]
          Length = 394

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 85/361 (23%), Positives = 145/361 (40%), Gaps = 70/361 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V  GG S E E+S+ S      A++ + + V+ I + ++                   
Sbjct: 5   IGVFFGGRSVEHEISVISALQAIQAIDHSRYDVTPIYISKAGQWYTGEQLLDVENYRKLD 64

Query: 50  -----------------------------------KPDLAFNVLHGNFGEDGLVQAILEL 74
                                              K D+AF VLHG+FGEDG +Q + EL
Sbjct: 65  ELLNNSTKIIMSPNFEDYSFVESGAKGLFKKPLKGKIDIAFPVLHGSFGEDGALQGLFEL 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           + IPY    +L+SA+ MDK+  K V+   G+PV   +                  +  + 
Sbjct: 125 MGIPYIGCDVLSSAVGMDKIMMKMVLKESGLPVVKYVWFYSKNWQQDTTSHIGKVEQTLG 184

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP   GSS+GI      + +   +  ++ ++H   L+ +  VD  E+ C V+G+ 
Sbjct: 185 YPVIVKPANLGSSVGIKKAANREELEEAIDYAAGFSH-KLLVEQTIVDLKEINCSVLGNY 243

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNST----------HVLPAKIPLDIYKEVQRLAFLAH 235
                                    +             LPA+IP ++  ++Q+LA    
Sbjct: 244 ENAQASTCEEPLMSGEILSYQDKYVTKGGNKGMSGTKRKLPAEIPTEMSDKIQQLAVDTF 303

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           Q +GC G+SR DFL D  + +V+  EIN  PG    S+   +      +F +L+  +++ 
Sbjct: 304 QVLGCAGVSRIDFLLDQATNEVYVNEINTIPG----SLSFYLWEATDKNFGQLVNDLIDT 359

Query: 296 A 296
           A
Sbjct: 360 A 360


>gi|255009929|ref|ZP_05282055.1| D-alanyl-alanine synthetase A [Bacteroides fragilis 3_1_12]
 gi|313147716|ref|ZP_07809909.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
 gi|313136483|gb|EFR53843.1| D-Ala-D-Ala ligase [Bacteroides fragilis 3_1_12]
          Length = 324

 Score =  146 bits (368), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 141/321 (43%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S            D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQTVSDEDVIEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      ++++IE ++ G ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVMIEAFMAGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARVSEELTKRVQALTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGMDIKDVMTDIIEN 322


>gi|332664669|ref|YP_004447457.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
 gi|332333483|gb|AEE50584.1| D-alanine--D-alanine ligase [Haliscomenobacter hydrossis DSM 1100]
          Length = 329

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 89/319 (27%), Positives = 155/319 (48%), Gaps = 28/319 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-----------------DRSVG 43
           +A+L GG  +ER VSL S +     L D  ++   I++                 D S+ 
Sbjct: 4   VAILTGGNVAERSVSLKSAETVRKHLNDQKYEKYVIELNGTQFTEQGTGTVVNLNDFSLP 63

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               ++K DL + +LHG+  EDG +Q   E+L IPYT   +++SA++ +K   K  + S 
Sbjct: 64  TPNGNIKFDLVYQMLHGHPAEDGCLQGYFEVLGIPYTGCDVMSSAITFNKQACKDFLRSH 123

Query: 104 GVPVCPSILVNRFTMDSQHLISP---PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +P+ PS ++ +    +   +     P  +KP K GSS G   +     +   +  +   
Sbjct: 124 NIPMAPSKVLRKGEAINWAELEAMGVPVFVKPNKNGSSYGASKVNTPDQLAGAIEHAF-- 181

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            + D++++E ++ G E + GV+              VP ++F+ ++ K     S  + PA
Sbjct: 182 VYDDEVVVEGFLKGTEFSNGVLRRNGEVVVLPITEIVPHNEFFDFKAK-YENQSQEITPA 240

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           ++  +   +VQ    L ++A+GCRGI R D++   +    F+LE N  PGM+  SI P+ 
Sbjct: 241 RLTPEQTAQVQAQTKLIYEAVGCRGICRFDYIL--VGDTFFFLEANTIPGMSEQSIVPQQ 298

Query: 278 AAYAGYSFRELLLWMVEDA 296
           A   G+S  ELL   V++A
Sbjct: 299 ARAHGWSITELLDAAVDEA 317


>gi|163789889|ref|ZP_02184325.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
 gi|159874829|gb|EDP68897.1| D-alanine--D-alanine ligase [Carnobacterium sp. AT7]
          Length = 366

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 85/348 (24%), Positives = 152/348 (43%), Gaps = 57/348 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA----- 54
           ++ GG S+E ++S+ +  +    +    ++V  I + RS   +   +     D+      
Sbjct: 5   LVYGGKSAEHDISILTAFSIIKEVYYDYYEVQPIYITRSGQWIKGAIVKQASDIVASDAL 64

Query: 55  -----------------------------------FNVLHGNFGEDGLVQAILELLEIPY 79
                                              F VLHG  GEDG VQ + E++ +PY
Sbjct: 65  KLAVSDNVQFAVDDNQQSQGMIIQPSDLKEEDAVIFPVLHGPNGEDGTVQGLFEVISMPY 124

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVI 130
             +G+LASA  MDK+ SKQ+    G+P  P + V +              +  +  P  I
Sbjct: 125 VGAGVLASACGMDKIISKQLFQQAGLPQVPYVPVRKAEWLNDKEIVFKQCEGTLFYPMYI 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI   +    +   +  +    +  ++++EQ ++  E+   V+G+  + ++
Sbjct: 185 KPANLGSSVGISKAENRDELIAAIELAL--RYDRRVVVEQGIEAREIEVAVLGNDDIHIS 242

Query: 191 EIAV--PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    DFY YE KY + +    +PA I  D+   ++  A  A QA+   G+SR DF
Sbjct: 243 VPGELVKSVDFYDYESKYINNDVVLQIPALISEDVNARLREYAVRAFQALDGSGLSRCDF 302

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                + +VF  E+N  PG T  S++P +    G ++ +L+  +++ A
Sbjct: 303 FLT-SNDEVFINEVNTMPGFTQFSMYPTLWKNTGLNYGDLVEELIQLA 349


>gi|254967057|gb|ACT97566.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 324

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E ++DG+E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKTKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLEIKDVMTDIIEN 322


>gi|212691723|ref|ZP_03299851.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
 gi|212665728|gb|EEB26300.1| hypothetical protein BACDOR_01218 [Bacteroides dorei DSM 17855]
          Length = 324

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 147/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +    +     + I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE ++ G E+TCG    +  +V            +       +  S  +
Sbjct: 185 AF--KESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++P DI + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S  
Sbjct: 243 TPARLPEDIAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|24214759|ref|NP_712240.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|39930898|sp|Q8F4I2|DDL_LEPIN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24195760|gb|AAN49258.1|AE011378_5 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
          Length = 351

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 97/344 (28%), Positives = 151/344 (43%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V               
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                               +  L  D+ F  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIVFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+             +     +      +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190
           S+ +  I   + +   L          +++ + ++ GIE++CGV+               
Sbjct: 184 SVSVYKITNREQLKEKLALIF--ESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+ 
Sbjct: 242 TEIVPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFII 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 302 --VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|300866881|ref|ZP_07111556.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
 gi|300335131|emb|CBN56718.1| D-alanine--D-alanine ligase [Oscillatoria sp. PCC 6506]
          Length = 368

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 93/369 (25%), Positives = 146/369 (39%), Gaps = 87/369 (23%)

Query: 1   MAVLMGGISSEREV------------------SLSSGKACASALEDAGFKVSQIDVDRSV 42
           + +L GG S E EV                  S               ++V    + +  
Sbjct: 6   IGLLFGGRSGEHEVSISSARAIARAIASDQNAS--------------KYEVLPFYIQKDG 51

Query: 43  GL--------VLAHLKP-----------------------------------DLAFNVLH 59
                     VL   KP                                   D+ F VLH
Sbjct: 52  RWLAGTVPQQVLETGKPLQLEGEEAIANLGENLILTPQSPIAYGQFPRPDIVDVWFPVLH 111

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G  GEDG VQ +L+L+++P+  SG+L SA+ MDK+  K V +  G+P      V R  + 
Sbjct: 112 GPNGEDGTVQGLLKLMQVPFVGSGVLGSAMGMDKIAMKMVFAQAGLPQVKYTAVTRSQVW 171

Query: 120 SQHLIS------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           S   I              P  +KP   GSS+GI  ++    +   L  ++S++    + 
Sbjct: 172 SNPCIFPKLCDQIEENLGYPCFVKPANLGSSVGISKVRSRPELETALDSAASYDRRIIVE 231

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
                  +E            +      KSDFY YE KY+   +   +PAK+   I  ++
Sbjct: 232 AGVVARELECAVLGNDRPQASIVGEITYKSDFYDYETKYAHGQADLFIPAKVSDAIASQI 291

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q +A  A  A+ C G++R DF +   + +V   EIN  PG T  S++P++ A +G SF E
Sbjct: 292 QSMAIEAFLALDCAGLARVDFFYVESTGQVLINEINTLPGFTATSMYPQLWAASGISFAE 351

Query: 288 LLLWMVEDA 296
           L+  +++ A
Sbjct: 352 LVDRLIQLA 360


>gi|297587783|ref|ZP_06946427.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
 gi|297574472|gb|EFH93192.1| D-alanine--D-alanine ligase [Finegoldia magna ATCC 53516]
          Length = 350

 Score =  146 bits (368), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 75/334 (22%), Positives = 148/334 (44%), Gaps = 44/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S+E EVS++S +   + L    + VS I V R    +                 
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVSAIFVRRDKKFIMKENITEEIKTDDELVL 66

Query: 46  -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                        ++ + P+  + F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTELSVIESVSDCISKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146
           MDK  +  +     +P    +++ +    +   I         +KP   GSS+G++  + 
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFDKTSKAVYVKPCNAGSSVGVMRAET 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203
           ++ +   +  +    +  ++L+E+ + G EL   VMG+ +          +   +F+ Y+
Sbjct: 187 EEELEQAIQNAF--LYDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +  + P  +   +  + +RLA   ++ +   G SR D        +++  EIN
Sbjct: 245 AKYNDAKTEMLTPFPMDEQLELKARRLAEKVYKIMSLSGFSRVDMFV--RDNELWVNEIN 302

Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
             PG+TP S+FP +       S  E+   +++ A
Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIDLA 336


>gi|325954146|ref|YP_004237806.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
 gi|323436764|gb|ADX67228.1| D-alanine--D-alanine ligase [Weeksella virosa DSM 16922]
          Length = 329

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 92/322 (28%), Positives = 154/322 (47%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AV+ GG S E  +SL S +     +    ++  ++ +                   D S
Sbjct: 4   VAVVAGGYSDESVISLKSCELIYQNINTEKYEPIRVRILKDAWYAEIDGEKYPINKADFS 63

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K DL +N +HG  GEDG +QA  +L+ +PY       SAL+ +K     V+S
Sbjct: 64  FERNGKKEKFDLVYNTIHGTPGEDGYLQAYFDLIGLPYNGCDSYQSALTFNKKDCIAVLS 123

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             G+P   S+ + +        I      P  +KP K GSSLGI  + +++ IP  L  +
Sbjct: 124 KYGIPHAKSVYLYQGEKVEPKKIVEQLGLPCFVKPNKSGSSLGISKVHREEDIPKALELA 183

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV---TEIAVPKSDFYSYELKYSSLNSTHV 214
                  ++LIE ++DG+E++ GV+              V  ++F+ YE K     S  +
Sbjct: 184 F--AEDKEVLIEAFLDGLEVSVGVLKYKGKTTVLGITEIVSDNEFFDYEAK-YDGKSQEI 240

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  +  + V+ +A   + ++   G SR++++   +  + + LEIN  PGM+P SIF
Sbjct: 241 TPARISQETEESVKAIATKVYDSLNMNGFSRAEYII--VDNQPYLLEINTLPGMSPASIF 298

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
           P+ AAYAG S +EL+   ++ A
Sbjct: 299 PQQAAYAGISLQELVQNELDFA 320


>gi|237708678|ref|ZP_04539159.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|237724044|ref|ZP_04554525.1| D-alanyl-alanine synthetase A [Bacteroides sp. D4]
 gi|265755352|ref|ZP_06090122.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
 gi|229437504|gb|EEO47581.1| D-alanyl-alanine synthetase A [Bacteroides dorei 5_1_36/D4]
 gi|229457378|gb|EEO63099.1| D-alanyl-alanine synthetase A [Bacteroides sp. 9_1_42FAA]
 gi|263234494|gb|EEZ20084.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_1_33FAA]
          Length = 324

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +    +     + I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE ++ G E+TCG    +  +V            +       +  S  +
Sbjct: 185 AF--KESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S  
Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|295691990|ref|YP_003600600.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
 gi|295030096|emb|CBL49575.1| D-alanine--D-alanine ligase [Lactobacillus crispatus ST1]
          Length = 360

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 145/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFANEEESFKVLDDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L++ P+    +L +A+
Sbjct: 67  VKNPHKVNNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMDKPFVGDDVLGAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKKNAKLNYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNADEYTAALKEAF--KYDDKVLVEKTVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   V+  A   + A  C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQEIIDTVRENARKVYAATECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYSELITRLIE 343


>gi|254967059|gb|ACT97567.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 341

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      +++++E ++DG ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|160885529|ref|ZP_02066532.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|260172151|ref|ZP_05758563.1| D-alanyl-alanine synthetase A [Bacteroides sp. D2]
 gi|293371713|ref|ZP_06618124.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|299147381|ref|ZP_07040446.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|315920460|ref|ZP_07916700.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|156109151|gb|EDO10896.1| hypothetical protein BACOVA_03529 [Bacteroides ovatus ATCC 8483]
 gi|292633410|gb|EFF51980.1| D-ala D-ala ligase N-terminal domain protein [Bacteroides ovatus SD
           CMC 3f]
 gi|298514659|gb|EFI38543.1| D-alanine--D-alanine ligase [Bacteroides sp. 3_1_23]
 gi|313694335|gb|EFS31170.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 324

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFTCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    +    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEEVVEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      +++++E ++DG ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVIVEAFMDGTELTCGCYKTKEKSVIFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ K VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTKRVQMLTSAIYDILGCSGIIRVDYIITA-GEKLNLLEVNTTPGMTTTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|6634589|emb|CAB64483.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
          Length = 347

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 91/334 (27%), Positives = 155/334 (46%), Gaps = 41/334 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + +L GG S+EREVS+ S ++   A+    F V    + +S   +               
Sbjct: 5   IILLYGGRSAEREVSVLSAESVMRAVNYDRFTVKTFFISQSGDFIKTQEFSQTPGQEDRL 64

Query: 50  ------KPD-------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                   D             + F VLHG  GEDG VQ  LE+L++PY    IL+S+L+
Sbjct: 65  MTNATIDWDKQVAPSAIYEEGAVVFPVLHGPMGEDGSVQGFLEVLKMPYVGCNILSSSLA 124

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVI 144
           MDK+ +K+V+ S G+   P + +      +         ++ P   KP   GSS+GI   
Sbjct: 125 MDKITTKRVLESAGIAQVPYVAIVEGDDLTAKIAEVEEKLTYPVFTKPSNMGSSVGISKS 184

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSY 202
           +  + +   L  +    +  ++L+EQ V+  E+  G++G+  +  T     V    FY Y
Sbjct: 185 ENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVGLLGNYDVKSTLPGEVVKDVAFYDY 242

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           + KY     T  +PAKI  D+   +++ A  A +AIG  G+SR +F +     ++   ++
Sbjct: 243 DAKYIDNKITMDIPAKISDDVVPIMRQNAKTAFRAIGGLGLSRCNFFYTDK-GEISLNKL 301

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +      S+ +L+  +V+ A
Sbjct: 302 NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLA 335


>gi|254967036|gb|ACT97554.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  146 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 146/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDSSELVVSLRSAQGLYSFIDKERYNLYIVEMEGHRWEVVLPDGSKTPIDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S          D A+  +HG  GE+G++Q   +LL IPY+   +L SA++ +K    Q +
Sbjct: 65  SFMENGEKKHFDFAYITIHGTPGENGILQGYFDLLGIPYSSCNVLVSAMTFNKFTCNQYL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S+++ +    +     + I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KGFGIRVAESLILRKGFEITDEEVINKIGLPCFIKPNAGGSSFGVTKVKTKEDIQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D+++IE ++ G E+TCG    +  +V            +       +  S  +
Sbjct: 185 AF--EESDEVMIEAFMRGTEITCGCYKTSDKEVVFPITEVVSANEFFDYGAKYNGESQEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++P D  + V+ L    +  +GC G+ R D++      KV  LEIN  PGMT  S  
Sbjct: 243 TPARLPEDTAERVRLLTSAIYDILGCSGLIRIDYIITE-GEKVNLLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|325685279|gb|EGD27393.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 362

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S      A++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKAIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V  I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++    G S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEDGISYPDLITRLIRLA 347


>gi|624700|gb|AAA60990.1| ligase [Enterococcus casseliflavus]
 gi|161779879|gb|ABX79432.1| VanC2/3 [Enterococcus casseliflavus]
 gi|161779885|gb|ABX79435.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTER 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|161779864|gb|ABX79422.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 146/343 (42%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG SSE  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSSEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIQPLFEENGFWLSEAQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+I         +           P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQDNQQQQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF     
Sbjct: 244 SLVEGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAIGLSYQELLQKLLVLA 345


>gi|319900221|ref|YP_004159949.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
 gi|319415252|gb|ADV42363.1| D-alanine--D-alanine ligase [Bacteroides helcogenes P 36-108]
          Length = 329

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 146/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  + +                    D 
Sbjct: 5   IAIVGGGDTSEYHVSLRSAQGIYSFIDKEKYTLYIVQMHGLDWHVLLPDGTAAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFMLDGKKIVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQFL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S+           D    I  P  IKP  GGSS G+  +KK + I   + +
Sbjct: 125 KAFGVRIAESLLLRKGQTVSDEDVIEKIGLPCFIKPSLGGSSFGVSKVKKREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           +       ++++E +++G ELTCG        +            Y    +  N  S  +
Sbjct: 185 AFEEA--REVVVEAFMEGTELTCGCYKTKDKSIVFPITEVVTHNEYFDYEAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP  +   VQ+L    +  +G +GI R D++      K+  LE+N  PGMTP S  
Sbjct: 243 TPARIPDGLRDRVQKLTSAIYDILGAQGIIRVDYIVTE-GEKINLLEVNTTPGMTPTSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|161779883|gb|ABX79434.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIVGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|161779846|gb|ABX79408.1| VanC4 [Enterococcus casseliflavus]
          Length = 350

 Score =  146 bits (367), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 145/343 (42%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIQPLFEGNGFWISEAQQTLVPDVLFPIMHGKYGEDGSIQGMFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPL 133
              G+ ASAL M+K    Q  ++ GV   P+I         R           P   KP 
Sbjct: 124 VGCGVAASALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQRQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIAPALKEAFAYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L + ++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYHSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|161779876|gb|ABX79430.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHKQKIQPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|161779861|gb|ABX79420.1| VanC2/3 [Enterococcus casseliflavus]
          Length = 350

 Score =  145 bits (366), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 84/343 (24%), Positives = 148/343 (43%), Gaps = 48/343 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLV------LAHLK-- 50
           +A++ GG S E  VSL+S  +   AL+ +   + +S I +             L +++  
Sbjct: 4   IAIIFGGNSPEYTVSLASATSAIEALQSSPYDYDLSLIGIAPDAMDWYLYTGELENIRQD 63

Query: 51  -------------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                          PD+ F ++HG +GEDG +Q + EL+++PY
Sbjct: 64  TWLLDTKHTQKIKPLFEGNGFWLSEEQQTLVPDVLFPIMHGKYGEDGSIQGLFELMKLPY 123

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPL 133
              G+  SAL M+K    Q  ++ GV   P+IL+       + +         P   KP 
Sbjct: 124 VGCGVAGSALCMNKWLLHQAAAAIGVQSAPTILLTNQANQQEQIEAFIQTHGFPVFFKPN 183

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           + GSS GI  +   + I   L ++ ++     L        I          ++   +  
Sbjct: 184 EAGSSKGITKVTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAI 243

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F+ +E KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF     
Sbjct: 244 SLVDGFFDFEEKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ 303

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG T  S +P M A  G S++ELL  ++  A
Sbjct: 304 -GELYLNEINTMPGFTSHSRYPAMMAAVGLSYQELLQKLLVLA 345


>gi|282879374|ref|ZP_06288117.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
 gi|281298487|gb|EFA90913.1| D-ala D-ala ligase N-terminal domain protein [Prevotella buccalis
           ATCC 35310]
          Length = 333

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 86/326 (26%), Positives = 141/326 (43%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI--------------D---VDRSVG 43
           +A++ GG SSE +VS+ S +   S  +   + V  +              D   +D++  
Sbjct: 8   IAIVCGGDSSEYDVSIRSAQGLYSFFDKERYNVYIVTIKGQDWNVCFDNGDTASIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +   +    D A+  +HG  GE+G++Q   ELL IPY+ SG+L  A++ +K      +
Sbjct: 68  SFVKEGEAVLFDYAYITIHGTPGENGIMQGYFELLHIPYSTSGVLVEAMTFNKYVLNNYL 127

Query: 101 SSCGVPVCPSILVNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           ++ GV V  S+LV R   D          +  P  +KP+  GSS G+  +K    +   L
Sbjct: 128 AAFGVKVAKSMLVKRGEEDKLCEQEVQDVLGMPCFVKPVADGSSFGVTKVKNTDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
            ++      D  +IE ++DG EL+ G        V   A        +       +    
Sbjct: 188 RRAFM--ESDTAMIEHFMDGTELSIGCYKTREKSVVFPATEVVSSNEFFDYDAKYNGQVQ 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMT 269
            + PA+I     KEV       +  + C GI R D++          V  LE+N  PGMT
Sbjct: 246 EITPARISEQTAKEVAEQTSRIYDILQCNGIIRIDYIITKDEAGQDVVNMLEVNTTPGMT 305

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
           P S  P+    AG +  ++L  +VE+
Sbjct: 306 PTSFIPQQVRAAGLNITDVLTEIVEN 331


>gi|153808959|ref|ZP_01961627.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
 gi|149128292|gb|EDM19511.1| hypothetical protein BACCAC_03260 [Bacteroides caccae ATCC 43185]
          Length = 324

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVLEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAIVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      +++L+E +++G ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVLVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++   VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDELTDRVQMLTSAIYDILGCSGIIRVDYIVTA-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLEIKDVMTDIIEN 322


>gi|288803981|ref|ZP_06409403.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
 gi|288333551|gb|EFC72004.1| D-alanine--D-alanine ligase [Prevotella melaninogenica D18]
          Length = 332

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 78/324 (24%), Positives = 137/324 (42%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    ++ D A+  +HG  GE+G++Q   +L+++PY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQLPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SI           + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPASDGSSFGVSKVKNIDQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D+++IE ++DG+E++ GV       V   A        +       +     +
Sbjct: 188 AFMQ--SDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKYNGQVEEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271
            PA++  +  K V       +  +   GI R D++          +  LEIN  PGMT  
Sbjct: 246 TPARMSDETAKRVAAETSRIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   + +L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|330448329|ref|ZP_08311977.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328492520|dbj|GAA06474.1| D-alanine--D-alanine ligase family protein [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 331

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLKP---------- 51
           +L GG S+E EVSL S       L+   G   +++++ ++ G + +  +P          
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDSENRPCELNLDKTLI 67

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L L  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVAIDYVIPCVHGFPGETGDLQSLLTLAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +                        +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENSQEAHQEALEAFKKWGKVFVKAACQGSSVGCYCVTTEQELTDAVNNA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLN--S 211
               + DQ+LIE+ +   EL           V         P   FYSYE KYSS +  +
Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGEELVITKPGEVSCPTDKFYSYEEKYSSDSLST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TKVEADNLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DDEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+ F E +   +++A
Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKNA 329


>gi|254967048|gb|ACT97560.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 326

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+      +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAITK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++++E ++DG E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--QEVVVEAFMDGTEITCGCYKTKDRSVVFPITEVVSHNEYFDYEAKYNGASDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+   D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARKKDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322


>gi|317478570|ref|ZP_07937727.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
 gi|316905211|gb|EFV27008.1| D-alanine-D-alanine ligase [Bacteroides sp. 4_1_36]
          Length = 326

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 84/321 (26%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+      +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAITK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++++E ++DG E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--QEVVVEAFMDGTEITCGCYKTKDKSVVFPITEVVSHNEYFDYEAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322


>gi|253564150|ref|ZP_04841607.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|251947926|gb|EES88208.1| D-alanyl-alanine synthetase A [Bacteroides sp. 3_2_5]
 gi|301161554|emb|CBW21094.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis 638R]
          Length = 324

 Score =  145 bits (366), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S            D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + S    ++++IE ++ G ELTCG        V            +       +     +
Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|255020016|ref|ZP_05292089.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
 gi|254970545|gb|EET28034.1| D-alanine--D-alanine ligase B [Acidithiobacillus caldus ATCC 51756]
          Length = 298

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 103/294 (35%), Positives = 157/294 (53%), Gaps = 16/294 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           SL+S  A   ALE AG +V  ID++   +   LA    +  FNV HG FGEDG++QA LE
Sbjct: 2   SLASAAAVRRALEAAGVRVVAIDIEPQRIQEQLAQSGAEFVFNVCHGQFGEDGVLQACLE 61

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQH 122
              +PYT SG+LASAL+MDK RSK++  + G+P      + R  +           D  H
Sbjct: 62  ASGLPYTGSGVLASALAMDKWRSKRLWQAAGLPTTRGQWLQREHVTGGSPCGQSSADELH 121

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +   P  +KP + GSSLGI  ++    +   + ++ +     ++L+E+ VDG+E T G++
Sbjct: 122 IARWPVFVKPNRAGSSLGISRVENAAGLAEAMAKAFAV--DSEILVEEAVDGLEATVGIV 179

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +L    +  P   FY YE KY + ++ ++LP+ +P    + +Q LA  A + +G R 
Sbjct: 180 AGRTLPPI-VIRPHRAFYDYEAKYLADDTEYLLPSGLPTATERRLQELALQAFRELGGRD 238

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             R DFL D     +  LE+N  PGMT  S+ P  A   G++  +L L +V  A
Sbjct: 239 WGRVDFLVDAEGG-IHLLELNAVPGMTDHSLVPMAARALGWTMTKLCLEIVSTA 291


>gi|313122929|ref|YP_004033188.1| d-alanine-d-alanine ligase a [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279492|gb|ADQ60211.1| D-alanine-D-alanine ligase A [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 362

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 85/343 (24%), Positives = 150/343 (43%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG--------LVLAHLKP- 51
           + ++ GG SSE EVS++S       ++   F V  I +  S           VL      
Sbjct: 7   VGLIFGGNSSEYEVSITSAGNIYKEIDKDKFDVHPIWITNSGYVASEADSYKVLEEPGYM 66

Query: 52  ----------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                                 D+ F ++HGN GEDG++Q +  L++ P+    +LA+A+
Sbjct: 67  VEKTDKTANLSNLIELASRPELDVLFPIVHGNLGEDGVLQGLFRLIDKPFVGVDVLAAAV 126

Query: 90  SMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHLISPPYVI----------KPLKGGS 137
           +MDK  +K +       V    SI    +       +S  +V           KP   GS
Sbjct: 127 TMDKEFTKILAQRAGVPVAKWVSIKRYEYEDAKNQKLSYDWVSGQLGTSNLFVKPSNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTEIAV 194
           S+G  +             + ++ + D++L+E+ + G E+              V  I  
Sbjct: 187 SVG--ITHVTDDSNYAEALAEAFKYDDKVLVEEGIVGTEVETAVLGNDHPVVSGVGRIIN 244

Query: 195 PKSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
             + +YSYE KYS+ ++T   +PA+IP +  ++VQ  A   +Q   C G++R D +    
Sbjct: 245 ADNTWYSYENKYSTESTTTLQIPAQIPAETAEKVQENALKIYQITECSGMARIDSMLRES 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +V + E+N  PG T +S++P++   AG S+ +L+  ++  A
Sbjct: 305 DGEVIFNELNALPGFTNISMYPKLFEEAGISYPDLITRLIRLA 347


>gi|297561190|ref|YP_003680164.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296845638|gb|ADH67658.1| D-alanine--D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 326

 Score =  145 bits (366), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 93/307 (30%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S E EVS+ SG+  A AL   G +V   DVD ++   L    P + F VLHG  
Sbjct: 19  VLAGGLSPEHEVSVHSGRGVAEALRRLGVEVQVADVDSTLLDRLVQDPPQVVFPVLHGAA 78

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL+ +PY  +      L+  K  +K ++++ GV V     + +       
Sbjct: 79  GEDGAIREVLELVGVPYVGARPGGCRLAYSKPAAKALLAAEGVRVPRGAALPKSAFHDLG 138

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP +GGS+ G   +   Q +   L   S + + D  L+E+ V
Sbjct: 139 APALMDRLADRLGLPLFVKPDRGGSAFGAAPVGSVQELSAAL--VSCFAYSDSALVEEQV 196

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G EL  GV+              VP    Y Y  +Y++  +    PA++      E   
Sbjct: 197 QGTELAVGVLDTGDGPVALPPVEIVPDGGVYDYAARYTAGRTEFFCPARLDPATVAEATE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH+ +G R +SR+D +      +V +LE NV PG+T  S FP  AA AG  F    
Sbjct: 257 VALTAHRVLGLRDLSRTDVIV-GTDGRVTFLETNVAPGLTETSTFPMGAAAAGLDFAVAC 315

Query: 290 LWMVEDA 296
             +   A
Sbjct: 316 RELAHQA 322


>gi|320450994|ref|YP_004203090.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
 gi|320151163|gb|ADW22541.1| D-alanine--D-alanine ligase [Thermus scotoductus SA-01]
          Length = 322

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 35/321 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           ++ GG S E EVSL S       +    F      + +    +L                
Sbjct: 8   LIAGGRSPEHEVSLLSAHGVLEHMP---FATELAVIAKDGRWLLGEEAFAALRAKVAPIG 64

Query: 50  -----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      + D+ F +LHG +GEDG +Q  LE+L  PY  +G+ ASAL MDK  SK+
Sbjct: 65  RHAFPPPLDWSRYDVVFPLLHGRWGEDGTIQGFLEILGKPYVGAGVAASALCMDKDLSKR 124

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +++  G+PV P + + +          P +V KP   GSS+G  + + +    L+   + 
Sbjct: 125 ILAQAGIPVVPWVALYQGERPFIPFDPPFFV-KPANTGSSIG--IRRVEHYAELEEALAE 181

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ H  + ++EQ + G+   E+                  ++ FY YE KY+   +  ++
Sbjct: 182 AFRHDQKAVVEQALSGVRELEVGILGNIFGEASPVGEVRYQAAFYDYETKYTPGRAELLI 241

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ LA  A++ +G RG++R+DF       +V+  EIN  PG TP S++P
Sbjct: 242 PAPLDPGTQETVQELALKAYRLLGIRGMARADFFLAE--GEVYLNEINTIPGFTPTSMYP 299

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            + A  G  + ELL  +VE A
Sbjct: 300 RLFAAGGLPYPELLRRLVELA 320


>gi|302345910|ref|YP_003814263.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
 gi|302149066|gb|ADK95328.1| D-ala D-ala ligase N-terminal domain protein [Prevotella
           melaninogenica ATCC 25845]
          Length = 332

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 79/324 (24%), Positives = 137/324 (42%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VS+ SG+   S  +   + +  +DV                    D 
Sbjct: 8   IAIVCGGDSSEHDVSMRSGQGLYSFFDKERYNIYIVDVKGIDWNVELPDGSLAPIDKNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  +    ++ D A+  +HG  GE+G++Q   +L++IPY+  G+L  AL+ DK      +
Sbjct: 68  SFVMNGERVEFDYAYITIHGQPGENGVMQGYFDLIQIPYSTGGVLVEALTFDKYVLNNYL 127

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  SI           + +  +  P  +KP   GSS G+  +K    +   L  
Sbjct: 128 RGFGIKVADSILLRRGEEYDEAEIEKRLGMPCFVKPAADGSSFGVSKVKNIDQLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D+++IE ++DG+E++ GV       V   A        +       +     +
Sbjct: 188 AFMQ--SDEVMIEAFMDGMEISQGVYKTKDKAVVFPATEVVTSNEFFDYNAKYNGQVEEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEINVQPGMTPV 271
            PA++  +  K V       +  +   GI R D++          +  LEIN  PGMT  
Sbjct: 246 TPARMSDETAKRVAAETSCIYDILHANGIIRIDYIISKDKDGKDVINMLEINTTPGMTVT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   + +L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKNVLSDIVEN 329


>gi|302190711|ref|ZP_07266965.1| D-alanyl-alanine synthetase A [Lactobacillus iners AB-1]
 gi|312874986|ref|ZP_07735005.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089731|gb|EFQ48156.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LEAF 2053A-b]
          Length = 360

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|259500836|ref|ZP_05743738.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
 gi|259167530|gb|EEW52025.1| D-alanine-D-alanine ligase A [Lactobacillus iners DSM 13335]
          Length = 366

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 13  VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 72

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 73  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 132

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 133 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 192

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 193 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 250

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 251 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 309

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 310 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 351


>gi|183221247|ref|YP_001839243.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189911338|ref|YP_001962893.1| D-alanyl-alanine synthetase A [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|190359161|sp|B0S9U5|DDL_LEPBA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229485962|sp|B0SS77|DDL_LEPBP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167776014|gb|ABZ94315.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779669|gb|ABZ97967.1| D-alanine--D-alanine ligase B (D-alanylalanine synthetase B;
           D-Ala-D-Ala ligase B) [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 349

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 92/344 (26%), Positives = 156/344 (45%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL----AHLKPD---- 52
           +A+L GGIS E  +S+ S     + ++   + V  + ++ +    +      + PD    
Sbjct: 6   IALLFGGISGEHIISVRSSAFIFATIDREKYDVCPVYINPNGKFWIPTVSEPIYPDPSGK 65

Query: 53  ------------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                          AF  LHG  GEDG +Q  L+ L IP+T S
Sbjct: 66  TEIEFLQEFNKANAIVSPSEPADISQMGFLSAFLGLHGGAGEDGRIQGFLDTLGIPHTGS 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGS 137
           G+LAS+L+MDK R+  +  + G+PV P + + +   D +        S P  IKP  GGS
Sbjct: 126 GVLASSLAMDKYRANILFEAMGIPVAPFLELEKGKTDPRKTLLNLSFSYPVFIKPTLGGS 185

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----- 192
           S+   + K  +     + +       D++L+++ V G E++ GV+               
Sbjct: 186 SVNTGMAKTAEEAMTLVDKIFVT--DDRVLVQKLVSGTEVSIGVLEKPEGKKRNPFPLVP 243

Query: 193 --AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
               PKS+F+ +E KY+   S  + PA +  ++ K +Q      H+ +GC+G SR+DF+ 
Sbjct: 244 TEIRPKSEFFDFEAKYTKGASEEITPAPVGDEVTKTLQEYTLRCHEILGCKGYSRTDFII 303

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  + LE N  PGMT  S+ P+ A   G + +++  W++E
Sbjct: 304 --SDGVPYVLETNTLPGMTGTSLIPQQAKALGINMKDVFTWLLE 345


>gi|58336484|ref|YP_193069.1| D-alanyl-alanine synthetase A [Lactobacillus acidophilus NCFM]
 gi|227903036|ref|ZP_04020841.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
 gi|81311548|sp|Q5FMN6|DDL_LACAC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|58253801|gb|AAV42038.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus NCFM]
 gi|227869210|gb|EEJ76631.1| d-alanine-d-alanine ligase [Lactobacillus acidophilus ATCC 4796]
          Length = 360

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 143/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ SG     A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSGHNIYKAIDKDKFDVHPIWITNEGYFASEEESFKVLEDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A 
Sbjct: 67  VENPHKVNNISNIIELKNLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAA 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWISIKRFEYDDKNNDKLNYEKVAEKLGHDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G  V     +         ++ + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VG--VNHVTNAEEYAAALEEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P DI   V+  A   ++   C G++R D +  P  
Sbjct: 245 KGSFYTYENKYDDNSTSKLQIPADLPQDIVDTVRENARKVYEITECSGMARIDSMLTP-D 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  +++
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGIPYTELITRLIQ 343


>gi|198277497|ref|ZP_03210028.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|198269995|gb|EDY94265.1| hypothetical protein BACPLE_03719 [Bacteroides plebeius DSM 17135]
 gi|254967003|gb|ACT97537.1| putative D-alanyl-alanine synthetase A [uncultured organism]
 gi|254967005|gb|ACT97538.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 325

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 86/321 (26%), Positives = 139/321 (43%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------------- 40
           +A++ GG SSE  VS+ S +   S ++   + +  +++ +                    
Sbjct: 5   IAIVAGGDSSEHGVSMKSAEGIYSFIDQDKYTLYIVELTKARWEAILSDGSRAQVDKNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       + PD A+  +HG  GE+G++Q   ELL IPY+   +L SAL+  K    Q +
Sbjct: 65  SFMDHGQKIIPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSALTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+           D    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKRHGISDEDVIAKIGLPCFIKPNASGSSFGVTKVKTKEQIQPALEA 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
           +      D ++IE ++DGIEL  G       +V            +           T +
Sbjct: 185 AF--KESDDVMIEAFMDGIELANGCYKTKKNEVVFPITEVVSQNEFFDYNAKYKGEVTEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S  
Sbjct: 243 TPARLSPELTSRVQQLTSAIYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++ED
Sbjct: 302 PQQVRAAGLDIKDVMTDIIED 322


>gi|309809166|ref|ZP_07703039.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170611|gb|EFO72631.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 360

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|295099013|emb|CBK88102.1| D-alanine--D-alanine ligase [Eubacterium cylindroides T2-87]
          Length = 347

 Score =  145 bits (365), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 83/336 (24%), Positives = 145/336 (43%), Gaps = 42/336 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------- 52
            V+ GG SSE  VSL S  +    + +  + ++ I +D++    +     D         
Sbjct: 5   GVVFGGQSSEYSVSLHSVASFLRQIHNEKYDITMIGIDQNGQFYVYDGSIDDIEHDHWIP 64

Query: 53  -------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                      F VLHG  GEDG VQ +LEL+ I Y    +++S
Sbjct: 65  QATKAAWVHKGIMALDGKNTVKELDCVFPVLHGKNGEDGCVQGLLELMNIHYVGCDVMSS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           A+SMDK     +     +P    +       N      Q  IS P+++KP   GSS G+ 
Sbjct: 125 AISMDKEIMHILCDEANIPCADYVCLKANEENPSFEMIQEKISLPWIVKPCNAGSSYGVH 184

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSDFY 200
            ++  +        +  ++   ++L+E+ ++G E+ C VMG+  +     +        +
Sbjct: 185 KVENKEEFEEACKDAFFYDGRGKILVEKAIEGFEIGCAVMGNEEVFTGSCDEIQISGGIF 244

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            +E KY    +  + PA+I  + + + + LA   ++A+ C G++R D    P   +V   
Sbjct: 245 DFEGKYEMKGAEIICPARIDEETFAKAKALAAKTYKAMNCCGMARVDMFVTPQK-EVILN 303

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           E+N  PG T  S +P M   AG  F +L+  +++ A
Sbjct: 304 ELNTIPGFTATSRYPSMMKEAGIEFGDLIDKLIDLA 339


>gi|309805808|ref|ZP_07699845.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
 gi|308164928|gb|EFO67174.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           LactinV 09V1-c]
          Length = 360

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 86/342 (25%), Positives = 154/342 (45%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPSYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHNVTNISNVIELSCRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQKLGTDLFVKPANQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSASDYKAAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+R A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPAALPSEIIETVRRQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|333029727|ref|ZP_08457788.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
 gi|332740324|gb|EGJ70806.1| D-alanine--D-alanine ligase [Bacteroides coprosuis DSM 18011]
          Length = 326

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 91/321 (28%), Positives = 150/321 (46%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           ++++ GG SSE  VSL S +   S ++ + + +  +++                    D 
Sbjct: 6   VSIVAGGDSSELPVSLKSAQGIYSFIDKSRYDLYIVEIQNKVWRVRLDNGVYAPINRHDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDGL+Q   ELL IPY+  G+LASAL+ DK    Q +
Sbjct: 66  SFEWNGEVITFDFAYITIHGTPGEDGLLQGYFELLGIPYSSCGVLASALTFDKFVCNQYL 125

Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+ V  S++     +   +D    I  P  IKP  GGSS G+  + K++ I   +L+
Sbjct: 126 KGFGMKVAESLMLRKGQSISDVDVVEKIGLPCFIKPNLGGSSFGVSKVTKEEQIQPAILK 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +       ++LIE ++DG E+TCG    ++  V            +       +     +
Sbjct: 186 AFH--ESSEILIEAFMDGTEITCGCYKTSNKSVVFPITEVVTHNEFFDYDAKYNGQVEEI 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++ K VQ L    +  IGC GI R DF+       +  LE+N  PGMTP S  
Sbjct: 244 TPARLSDELTKRVQTLTSAIYDIIGCSGIIRVDFIITDKK-VINLLEVNTTPGMTPTSFI 302

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 303 PQQVRAAGLEIQDVMTDIIEN 323


>gi|161506745|ref|YP_001576695.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus DPC 4571]
 gi|260102150|ref|ZP_05752387.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|190359176|sp|A8YWP6|DDL_LACH4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160347734|gb|ABX26408.1| D-alanine-D-alanine ligase [Lactobacillus helveticus DPC 4571]
 gi|260084040|gb|EEW68160.1| D-alanine-D-alanine ligase A [Lactobacillus helveticus DSM 20075]
 gi|328464938|gb|EGF36226.1| D-alanyl-alanine synthetase A [Lactobacillus helveticus MTCC 5463]
          Length = 360

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 83/340 (24%), Positives = 146/340 (42%), Gaps = 49/340 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + ++ GG SSE EVS+ S +    A++   F V  I +                      
Sbjct: 7   VGLIFGGNSSEYEVSIVSCRNIYKAIDKEKFDVHPIWITNEGYFANEEESFKVLEDPSYQ 66

Query: 50  --------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG++Q +  L+  P+    +LA+A+
Sbjct: 67  VKNPHKVHNISNLIELENLPEIDVFFPIVHGNLGEDGVLQGLFRLMNKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----------QHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  D               +     +KP   GSS
Sbjct: 127 TMDKEFTKILAQRVGVPVADWITIKRFEYDDKNNDKLDYEKVAEKLGRDMFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +         L    ++ + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNADEYAAAL--KEAFKYDDKVLVEETVPGTEVETAVLGNDKPIVAGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PA +P +I   V+R A   ++   C G++R D +  P  
Sbjct: 245 KGSFYSYKNKYDDNSTSKLQIPADLPQEIIDTVRRNARKVYEVTECSGMARIDSMLTP-G 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            KV   E+N  PG T +S++P++   AG  + EL+  ++E
Sbjct: 304 GKVVLTEVNALPGFTNISMYPKLFEEAGVPYTELITRLIE 343


>gi|160888048|ref|ZP_02069051.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
 gi|156862547|gb|EDO55978.1| hypothetical protein BACUNI_00456 [Bacteroides uniformis ATCC 8492]
          Length = 326

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+      +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E ++DG E+TCG        V            Y    +  N  S  +
Sbjct: 185 AFAEA--QEVLVEAFMDGTEITCGCYKTKDKSVVFPITEVVSHNEYFDYEAKYNGASDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322


>gi|289616954|emb|CBI56344.1| unnamed protein product [Sordaria macrospora]
          Length = 334

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 78/330 (23%), Positives = 147/330 (44%), Gaps = 53/330 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV++GG S E +VS+S+G A  + ++ + + + +I + R                    
Sbjct: 11  IAVVVGGYSGEYDVSISTGAAIYTNVDRSRYNLYKIVIPRDPKAAWYHLTDSSQEIPVDR 70

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                              +K DLA+  +HGN GE+G++Q   ++L +PYT  G  AS+L
Sbjct: 71  NDFSVTLPSSSGSGENNQKIKFDLAYISIHGNPGENGVLQGYFDMLGLPYTSCGFYASSL 130

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + +                                  P  +KP  GGSS+    +K  + 
Sbjct: 131 TANNGTFSF-----------------DADALLREFELPVFVKPASGGSSVATTKVKSREQ 173

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSY-EL 204
           +   +  +   +   Q+L+E+++ G E  CGV+ DA     +      +P  D   +   
Sbjct: 174 VVQAVEDAMREDGNGQVLVEEFIAGREFDCGVIRDAAGKLHVFPITEVIPHGDSEYFDYN 233

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              + +S+ V PA++  ++   ++ ++   +  + CRG+ R D+ +D   +++++LE+N 
Sbjct: 234 AKYNGSSSKVTPAEVEEEVSDRIKDVSAQLYDLLDCRGVVRFDYRYDTDKKQLYFLEVNT 293

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG TP S+ P+ A  AG S  EL   ++E
Sbjct: 294 IPGQTPESMVPQQARAAGISIAELYHMVIE 323


>gi|315605519|ref|ZP_07880556.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
 gi|315312786|gb|EFU60866.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 180 str.
           F0310]
          Length = 335

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 83/306 (27%), Positives = 156/306 (50%), Gaps = 17/306 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G++V + DVD S+   +   +PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILAQFGYEVMRSDVDASLTESIQTFEPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE + +P+  S  + + L+ +K  +K ++ S GV     + + +       
Sbjct: 67  GEDGSLQSFLESVGVPFVGSSSVQAMLASNKPIAKALLGSAGVATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI        +   +    ++ +G +L++EQ +
Sbjct: 127 ASNVLAALEGSVSFPVVIKPTDGGSALGISTAHNADQLRRAM--VDAFAYGQRLMVEQRI 184

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG ++   V+                    Y Y+ +Y++  + + +PA+   +I  ++Q 
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEISTDGGRYDYDARYTTDETEYFVPARFSDEILADLQA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY-SFREL 288
            A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +L
Sbjct: 245 AAVEAHTTLGLRDLSRIDFVVDDA-GTCWFIDANVTPGMTDTSLLPQAADAFDDSSFAQL 303

Query: 289 LLWMVE 294
              +++
Sbjct: 304 CADIID 309


>gi|163839625|ref|YP_001624030.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
 gi|162953101|gb|ABY22616.1| D-alanine--D-alanine ligase [Renibacterium salmoninarum ATCC 33209]
          Length = 365

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 99/332 (29%), Positives = 152/332 (45%), Gaps = 37/332 (11%)

Query: 1   MAVLMGGISSEREVSLSSG---KACASALEDAGFKVSQIDVDRSVGL----------VLA 47
           +AV+ GG+SSE +VSL+S    +A A+AL   G +V    +D                  
Sbjct: 36  IAVIGGGVSSEHDVSLASSEGTRAAAAAL---GHRVHFFLIDSDGEWSVDGVPGTTAAWE 92

Query: 48  HLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            L+  DLA  ++HG  GEDG++Q  LE + + Y  SG+L+SA+ +DK  +K V  + GV 
Sbjct: 93  KLRSCDLAIPMVHGAGGEDGVLQGFLETVGVSYFGSGVLSSAVGLDKQVTKLVAHTVGVR 152

Query: 107 VCPSI-------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             P +                   +     I  P  +KPL+GGSS GI  + +  ++   
Sbjct: 153 TAPGLTIDATLRDQLAETPDQAENLLKSAKIELPVFVKPLRGGSSFGISKVTEQLNLADA 212

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV------PKSDFYSYELKYS 207
           +  ++       +LIE  V G E+  GV+      V            K +F+S E KYS
Sbjct: 213 VKLAAHGPVEQDVLIEPEVRGKEVDVGVLELPDCSVIVGPCLQVLADSKEEFFSTEAKYS 272

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           S  +  ++PA I  +    ++  A     A+GCRG++R DF  D         EIN  PG
Sbjct: 273 STETRFLVPAPIGDEASAAIRAQAKAVFTALGCRGLARVDFFVD-DDGTATLNEINTLPG 331

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            T  S  P + A AG ++  L+  ++E A   
Sbjct: 332 FTSHSQVPRIWAAAGVNYEGLVAIIIETALAR 363


>gi|45657718|ref|YP_001804.1| D-alanyl-alanine synthetase A [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|59797586|sp|Q72R93|DDL_LEPIC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|45600958|gb|AAS70441.1| d-alanine-d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 351

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 98/344 (28%), Positives = 152/344 (44%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V               
Sbjct: 4   IAVFFGGSSTEHSISILTGCFICKTLHTMGHSVKPILLTKDGGWVVPSEYRMSIPFEVSN 63

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                               +  L  D+AF  LHG  GEDG +Q  LE+L IPYT SG+L
Sbjct: 64  SPDLFQEEFQKRYGVSRTNQIFSLDADIAFLGLHGGQGEDGTIQGFLEILGIPYTGSGVL 123

Query: 86  ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           ASA++MDK R+ Q+             +     +      +     +  P  +KP++GGS
Sbjct: 124 ASAIAMDKTRANQIFLQSGQKVAPFFEIDKLEYLNSTDAVITKLETLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190
           S+ +  I   + +   L          +++ + ++ GIE++CGV+               
Sbjct: 184 SVSVYKITNREQLKEKLALIF--ESDSKVMSQSFLTGIEVSCGVLERYRDGKFKKIALPA 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP  +F+ +E KY    S  + PA+I     K VQ LA  AH+++GC G SR+DF+ 
Sbjct: 242 TEIVPGGEFFDFESKYKQGGSHEITPARISEQEMKRVQELAIAAHRSLGCSGYSRTDFII 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             ++ +   LE N  PGMT  S+ P+ A  AG S  E+   ++E
Sbjct: 302 --VNGEPHILETNTLPGMTETSLIPQQAKAAGISMEEVFSDLIE 343


>gi|265765163|ref|ZP_06093438.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
 gi|263254547|gb|EEZ25981.1| D-alanyl-alanine synthetase A [Bacteroides sp. 2_1_16]
          Length = 324

 Score =  145 bits (365), Expect = 8e-33,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG +SE  VSL S +   S ++   + +  ++                 VDR+  
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGSKTPVDRNNF 64

Query: 44  LVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +     +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMMRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S            D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + S    ++++IE ++ G ELTCG        V            +       +     +
Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|256847995|ref|ZP_05553439.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715055|gb|EEU30032.1| D-alanine-D-alanine ligase [Lactobacillus coleohominis 101-4-CHN]
          Length = 377

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 138/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG SSE +VS  S       ++   + V      +   L+               
Sbjct: 8   IALLFGGNSSEHDVSKRSAHNIYDGMDKDKYNVKVFMFTKDGILLDNAASQRIFDGEPED 67

Query: 46  ------------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             L  L+     D  F V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVKEAYATMDLDSPLAPLEALRTAGPIDFFFPVIHGNLGEDGTVQGLFRLLKKPYVGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I ASALS DK  +K+++   GV   P +               ++ +     +KP K GS
Sbjct: 128 ITASALSFDKDYTKRILDLAGVRNTPYVLVTPENRDQYDWQAIENELGTTVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  ++ +Q     L  +  +++   +              +  +  +      V   
Sbjct: 188 SVGIHKVENEQEYQAALDDAFIYDYKVLVEQAINNPREVEISILGNEKPIASKLGGVRVP 247

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              ++    +           LP  +P  + +E+  +A  A++A+  +G++R DFL D  
Sbjct: 248 KGDAFYDYENKFVDASGVVFDLPVILPEKLTREITEMALKAYKALDMKGLARIDFLVDE- 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +   +  E N  PG T +S++P+M + +G  +  L+  ++E 
Sbjct: 307 NDVPYLGEPNTLPGFTNISLYPQMWSVSGIDYSTLIDKLIEL 348


>gi|229818288|ref|ZP_04448569.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
 gi|229784158|gb|EEP20272.1| hypothetical protein BIFANG_03588 [Bifidobacterium angulatum DSM
           20098]
          Length = 377

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 86/369 (23%), Positives = 150/369 (40%), Gaps = 76/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S     +A++   F V  + + ++   ++    P         
Sbjct: 6   IMVLYGGRADEHSISCISTAGVLNAIDAERFDVVPVGITKTGQWIVGGEDPRSWSLDDGT 65

Query: 52  -----------------------------------------DLAFNVLHGNFGEDGLVQA 70
                                                    D  F VLHG +GEDG VQ 
Sbjct: 66  LPEVVATADSRAVTLDVSRGQDGFFADDPGQPDHVISLGHIDAVFPVLHGVYGEDGTVQG 125

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-------- 122
           +LE++ +PY   G+ ASA  MDK  +K V+++ G+P  P I+V+      +         
Sbjct: 126 LLEMMGVPYVGCGVFASAACMDKHYTKIVLNAAGIPTAPGIMVDARHATGESVYDEVKKA 185

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-----NHGDQLLIEQYVDGIEL 177
            ++ P  +KP + GSS G+  +++       +    +       H  ++L+EQ +D  E+
Sbjct: 186 KLAYPLFVKPSRAGSSFGVTKVEQADDEQAQIAALEAAVAEAGKHDWKVLVEQGIDAREI 245

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIYK 225
            C V+  A  D  E + P      +  +                     +PA +P+ + +
Sbjct: 246 ECAVLCAAPGDEPEASWPGEIVLDHRDQGDDQFYDFDSKYMDSSASHVEVPANLPVSVLE 305

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +V+ +A  A  A+   G+SR D    P    V   EIN  PG TP+S++P+    +G  +
Sbjct: 306 DVRDVARRAFAAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGFTPISMYPKAWDASGIGY 364

Query: 286 RELLLWMVE 294
            EL+  ++E
Sbjct: 365 TELITRLIE 373


>gi|270295586|ref|ZP_06201787.1| conserved hypothetical protein [Bacteroides sp. D20]
 gi|270274833|gb|EFA20694.1| conserved hypothetical protein [Bacteroides sp. D20]
          Length = 326

 Score =  145 bits (364), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEFHVSLRSAQGIYSFIDKEKYTLYIVEMHGLDWHVQLPDGAKAPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA++L+ DK    Q +
Sbjct: 65  SFVLDGEKVTFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAASLTYDKFACNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV +  S+      +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KGFGVRIAESLLLRGGQSVTDEDVMEKIGLPCFIKPSLGGSSFGVTKVTAKEQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E ++DG E+TCG        V         +  Y    +  N  S  +
Sbjct: 185 AFAEA--QEVLVEAFMDGTEITCGCYKTKDKSVVFPITEVVSYNEYFDYEAKYNGASDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  D+ + VQ L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISDDLTRRVQTLTSAIYDILGAYGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGMEMKDVMTDIIEN 322


>gi|163843534|ref|YP_001627938.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
 gi|163674257|gb|ABY38368.1| D-alanine--D-alanine ligase [Brucella suis ATCC 23445]
          Length = 353

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/341 (24%), Positives = 150/341 (43%), Gaps = 51/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + VL GG S+  +VS+ S     +AL+ A ++   + V R+   +L+             
Sbjct: 8   IVVLFGGRSAGHDVSVLSATNVMNALDPAKYEAVPVFVTRAGQWLLSRFVNGALEKPSSG 67

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     K D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 68  AELCLVPGGCGRAIVVPDAGAPYEADKIDIIFPVLHGLHGEDGAVQGLAQVARVPLAGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           I  SA ++DK  +K++V+  G+    S+ + R  + +    +  +  P  IKP + GSS+
Sbjct: 128 IPGSANALDKDIAKRLVNEAGLSTAKSVTITREEVPAFSALEQALGLPIFIKPARQGSSV 187

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEI 192
           G  V K           S  + + D+LL E+++   E+ CGV+         +       
Sbjct: 188 G--VHKVVTEADYQAAMSDGFTYDDKLLAEEFIQAREVECGVLEDEGGALFVSRAGEIVP 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           A     +        +  +   +PA++P  +  E++ +A  A + +GC  ++R DF    
Sbjct: 246 AESHCFYSYDAKYIDADGTEIKVPAELPEQVENEIRAIAARAFRVLGCDSMARVDFFVTA 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R++   EIN  PG T +S++ ++ A +G S+ E++  +V
Sbjct: 306 -DRRIVLNEINTIPGFTDMSMYSKVMAVSGVSYPEIINRLV 345


>gi|298252869|ref|ZP_06976663.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
 gi|297533233|gb|EFH72117.1| D-alanine-D-alanine ligase [Gardnerella vaginalis 5-1]
          Length = 380

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 140/372 (37%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------------------ILVN 114
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P                       
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGINVAPGIALDARKFASDAKNRFDAYAEE 185

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222
            E+ C V+     +  + + P                               +PA +P +
Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D        +V   EIN  PG TP+S++P+     G
Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVT-KDGRVILNEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|283783672|ref|YP_003374426.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
 gi|283441575|gb|ADB14041.1| D-ala D-ala ligase N-terminal domain protein [Gardnerella vaginalis
           409-05]
          Length = 380

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 80/372 (21%), Positives = 139/372 (37%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFHMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLARENDGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------------------PVCPSILVN 114
           E++++PY   G+LASA  MDK  +KQ+  + G+                      +    
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDAENRFDAYAEE 185

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILAQVEAAKLEYPLFVKPSRAGSSFGVTKVESRDAKALAEAIFEASEHDWRVLVEQGIDA 245

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222
            E+ C V+     +  + + P                               +PA +P +
Sbjct: 246 REIECAVLAARDGEEPKASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D        +V   EIN  PG TP+S++P+     G
Sbjct: 306 TLERVRKTALAAFKAADGRGLSRVDSFVT-KDGRVILNEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|46199525|ref|YP_005192.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
 gi|81405628|sp|Q72IA9|DDL_THET2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|46197151|gb|AAS81565.1| D-alanine-D-alanine ligase [Thermus thermophilus HB27]
          Length = 319

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 151/323 (46%), Gaps = 35/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG+S E EVSL S +     +    F      + R    +L                
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHMP---FPTDLAVIARDGRWLLGEKALAALEAKAAPEG 61

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+
Sbjct: 62  EHPFPPPLPWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 121

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  GVPV P + V +          PP+ +KP   GSS+GI  +++ Q +   L  + 
Sbjct: 122 VLAQAGVPVVPWVAVRKGEPSM-VPFDPPFFVKPANTGSSVGISRVERFQDLEAALALAF 180

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              + ++ ++E+ +  +   E+                  ++ FY YE KY+   +  ++
Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ LA  A++ +G RG++R DF       +V+  E+N  PG TP S++P
Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GEVYLNELNTIPGFTPTSMYP 296

Query: 276 EMAAYAGYSFRELLLWMVEDASC 298
            +    G ++ ELL  +VE A  
Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319


>gi|325912205|ref|ZP_08174602.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
 gi|325475864|gb|EGC79033.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus iners
           UPII 143-D]
          Length = 360

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 85/342 (24%), Positives = 153/342 (44%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLA----- 47
           + ++ GG SSE EVS+ SG+    A++   + V  + +        D     VL      
Sbjct: 7   VGLIFGGNSSEYEVSIISGRNIYKAIDKEKYDVYPMWITNTGFLASDADSRKVLEDPTYQ 66

Query: 48  ------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                               + D+ F ++HGN GEDG +Q +L +L+ P+    +LA+A+
Sbjct: 67  IENPHTVTNISNVIELSNRPEIDVFFPIVHGNLGEDGCLQGLLRILDKPFVGDDVLAAAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----------HLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I + RF  +               +     +KP   GSS
Sbjct: 127 TMDKELNKIMAQRAGVPVADWISIKRFEYNDAKNEKLSYDYVSQQLGTDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +GI  +         L  + ++ + D++L+E+ + G E+   V+G+    V+ +    + 
Sbjct: 187 VGISHVTSAADYEKAL--AEAFKYDDKVLVEETIKGTEVETAVLGNDDAIVSGVGQITNA 244

Query: 199 FYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  N        +PA +P +I + V+  A   + A  C G++R D +     
Sbjct: 245 QGSWYSYENKYNDNSTSKLQIPADLPAEIVETVRSQALKVYHATECSGLARVDSMLS-SD 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            KV + E+N  PG T +S++P++    G S+ EL+  ++  A
Sbjct: 304 NKVIFNELNSLPGFTNISMYPKLFEQVGISYTELITKLLNYA 345


>gi|60680013|ref|YP_210157.1| D-alanyl-alanine synthetase A [Bacteroides fragilis NCTC 9343]
 gi|81316915|sp|Q5LI31|DDL_BACFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|60491447|emb|CAH06197.1| putative D-Alanine-D-Alanine-Ligase [Bacteroides fragilis NCTC
           9343]
          Length = 324

 Score =  145 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 82/321 (25%), Positives = 142/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLQDGSKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   +++ IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFMNGAEKVVFDFAYITIHGTPGEDGRLQGYFDMIRIPYSCCGVLAAAITYDKFVCNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S            D    I  P  IKP  GGSS G+  +K  + I   + +
Sbjct: 125 KAFGVRISESLLLRQGQAVSDEDVVEKIGLPCFIKPNLGGSSFGVTKVKTREQIQPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + S    ++++IE ++ G ELTCG        V            +       +     +
Sbjct: 185 AFSEA--EEVMIEAFMGGTELTCGCYKTKEKSVVFPLTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++ + VQ L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISEELTRRVQTLTSAIYDILGCSGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|170078193|ref|YP_001734831.1| D-alanyl-alanine synthetase A [Synechococcus sp. PCC 7002]
 gi|190359212|sp|B1XNQ0|DDL_SYNP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169885862|gb|ACA99575.1| D-alanyl-D-alanine ligase [Synechococcus sp. PCC 7002]
          Length = 353

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 91/341 (26%), Positives = 148/341 (43%), Gaps = 45/341 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA----GFKVSQIDVDRSVGL--------VLAH 48
           + +L GG S E +VS+ S  A A A         +++    +DR+           VL  
Sbjct: 6   VGLLFGGKSGEHDVSIVSAAAIAKAFAQEDNPDKYELLPFYIDRNGIWHDPEISQQVLTA 65

Query: 49  LK---------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            K                      D  F ++HG  GEDG +Q +L L+E P+  S +L S
Sbjct: 66  GKALPVETVDPASRWQFPPAAPSIDAWFPIVHGPNGEDGTLQGLLTLMEKPFVGSKVLGS 125

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKG 135
           A  MDK+  K V +  G+     +            +  +     +  +  P  +KP   
Sbjct: 126 AAGMDKLAMKMVFAQAGLAQVDYVGVLRSEVWSGPCVFPKVCDKIEAQLDYPMFVKPANL 185

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           GSS+GI  ++    +   L  ++ ++    +        +E            V      
Sbjct: 186 GSSVGISKVRTRDELEKALDLAAEYDRRLIVEAGVTAREVECAVLGNDQPKASVVGEIRF 245

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            SDFY YE KY+   S+  +PA+IP  I +++Q LA  A QA+ CRGI+R DF +   ++
Sbjct: 246 DSDFYDYETKYTDGKSSMHIPAEIPGAIAQQIQELAIKAFQALDCRGIARVDFFYVEATQ 305

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            V   EIN  PG T +S++P++   +G  F +L+  +V+ A
Sbjct: 306 TVLINEINTLPGFTALSMYPQLWQQSGVPFPQLVDRLVQFA 346


>gi|89076629|ref|ZP_01162932.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
 gi|89047711|gb|EAR53313.1| D-alanylalanine synthetase [Photobacterium sp. SKA34]
          Length = 331

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 136/325 (41%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG S+E EVSL S       L+  +G   +++++ ++ G + A  +           
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTISGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  LGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +                        +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHKEASEAFKKWGKVFVKAACQGSSVGCYSVMSEQELTEAVNNA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY--SSLNS 211
               + DQ+LIE+ +   EL           V         P   FYSYE KY   S+++
Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TMVEAENLTEEQVEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G +F + +   +++A
Sbjct: 305 SMFPKMLEHNGQTFADFIEQAIKNA 329


>gi|111115023|ref|YP_709641.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|216263979|ref|ZP_03435973.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
 gi|122956408|sp|Q0SNW3|DDL_BORAP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|110890297|gb|ABH01465.1| D-alanine--D-alanine ligase [Borrelia afzelii PKo]
 gi|215980023|gb|EEC20845.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase) [Borrelia
           afzelii ACA-1]
          Length = 361

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/342 (24%), Positives = 163/342 (47%), Gaps = 50/342 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +    +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSVYLALLDLNKYNIYSAYIDKCTGIWYLLDSVSDPPKPIDTD 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGFGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCVGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   ++           + + ++  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPIVPFIGFRQYDYSLDKEEIKRNVKEVLGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKS 197
           I V   +  I   + ++    +   ++IE++++  E+ C ++G+  +      E+ V   
Sbjct: 187 INVAYSENQIESCIEEAL--KYDLTIVIEKFIEAREIECSIIGNEKMKIFSPGEVVVQDF 244

Query: 198 DFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            FY Y+ KY      +    +PA +  +    ++  AFL ++ +  RG++R DF  +  S
Sbjct: 245 IFYDYDAKYSVIPGNSIIFNIPAHLETNQLLSIKEYAFLVYKNLELRGMARVDFFVEKKS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++  EIN  PG T +S+F +M ++ G  F++L+  +++ A
Sbjct: 305 GTIYLNEINTIPGFTDISMFSKMCSHDGLQFKDLIDNLIDYA 346


>gi|326800470|ref|YP_004318289.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
 gi|326551234|gb|ADZ79619.1| D-alanine--D-alanine ligase [Sphingobacterium sp. 21]
          Length = 333

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 151/326 (46%), Gaps = 30/326 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-----------------DVDR-SV 42
           +A++ GG + E E+SL S       L+ + F V +I                 +V+R   
Sbjct: 5   IALITGGFTGEIEISLKSAAFVEQKLQTSRFDVYKIILTPESWYHVDDAGIKHEVNRNDF 64

Query: 43  GLVLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK--- 97
            L L    +K DLAF ++HG+ GEDG +Q  L+++ + YT    L SAL+M+K  +K   
Sbjct: 65  TLSLKDGLVKFDLAFIMIHGSPGEDGRLQGYLDMIGLKYTSCDTLTSALTMNKAYTKSLL 124

Query: 98  ---QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                +                 ++ ++ +  PY +KP  GGSS+G+  +K+   +   +
Sbjct: 125 QGIDGLYLAPSVCLSPATRAVSEINVKNELKLPYFVKPNGGGSSIGMTKVKQLDELSSAI 184

Query: 155 LQS-SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLN 210
            ++  + N G Q+L+E++V G E + G+    +          +   +F+ +E KY    
Sbjct: 185 DRALGTENAGKQVLVEEFVSGREFSVGIYNSKAGLKVLPATEVITTREFFDFEAKYIPGL 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + PA +  +    V++L    +  + C+G+ R DF  +  + K +++EIN  PG T 
Sbjct: 245 TKEITPADLTNEQQGRVEQLVKEVYIRLNCKGLVRIDFFLERETDKFYFIEINTIPGQTE 304

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S  P+    AG    +    ++E A
Sbjct: 305 TSFIPQQVRAAGLQETDFYTELIEQA 330


>gi|44805036|gb|AAS47778.1| D-alanine-D-serine ligase [Clostridium innocuum]
          Length = 355

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 142/347 (40%), Gaps = 53/347 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+++GG S E  VSL S  +    +    +++  I + +                     
Sbjct: 7   AIILGGKSDEYPVSLHSAGSLIHKINKEHYELIFIGISKDGKWYAYSGDVDGIEHDTWLC 66

Query: 46  --------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        ++ D  F +LHG  GEDG +Q + EL  IPY
Sbjct: 67  EAHCTPCVLSSSEGCRGFLKLHADGTFTRIEVDCIFPILHGKNGEDGTIQTLFELSGIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIK 131
              G +  A+ MDK  +  V+   G+   P + V              ++  +  P  IK
Sbjct: 127 VGCGHMRFAICMDKEMAHIVMEHAGISCAPFVCVYEADDLDYRKVYEHAKETLGLPIFIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--V 189
           P   GSS GI  ++        +  +   +   ++++E  ++G E+   VMG+  L    
Sbjct: 187 PANAGSSFGIHRMESFDGFEEAMKDAFYHDGKGKVILETTIEGFEIGVAVMGNKELFAGS 246

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +     + F+ YE KY  ++S    PA+I   +++E + +A  A++A+ C+G++R D  
Sbjct: 247 VDEIETAAPFFDYEGKYEMVDSHIYCPARISPKLFEEAREIAKKAYRAMNCKGMTRVDMF 306

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             P    +   E+N  PG T  S +P M   AG  F EL+  +V  A
Sbjct: 307 VTPED-TIILNEVNTIPGFTDTSRYPTMMKEAGIPFPELIDKLVALA 352


>gi|254967046|gb|ACT97559.1| putative D-alanine-D-alanine ligase [uncultured organism]
          Length = 324

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 87/321 (27%), Positives = 148/321 (46%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE EVSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVCGGDTSEFEVSLRSAQGIYSFIDKERYTLYIVEMRGTDWHVQLPDGTKTPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L  A +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+AL+ DK    Q +
Sbjct: 65  SFRLDGAKVVFDFAYITIHGTPGEDGRLQGYFDMLHIPYSCCGVLAAALTYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +   + I   + +
Sbjct: 125 KAFGVRIADSLLLRQGQSVSDEDVIGKIGLPCFIKPSLGGSSFGVTKVNVKEQIHPAIAK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--STHV 214
           + +     ++L+E ++DG+E+TCG   +    V            Y    +  N  S  +
Sbjct: 185 AFAEA--KEVLVEAFMDGMEITCGCYKNKEKSVVFPITEVVSHNEYFDYKAKYNGESDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+IP ++   VQ+L    +  +G  GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARIPDELRDRVQKLTSAIYDILGASGIIRVDYIITE-GEKINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    A    ++++  ++E+
Sbjct: 302 PQQVRAANLESKDVMTDIIEN 322


>gi|91214527|ref|ZP_01251500.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
 gi|91186954|gb|EAS73324.1| D-alanylalanine synthetase [Psychroflexus torquis ATCC 700755]
          Length = 329

 Score =  144 bits (363), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 147/323 (45%), Gaps = 31/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL-EDAGFKVSQ-----------------IDVDRSV 42
           +AV MGG S E E+SL SG+     L ++  ++V +                 I +D+S 
Sbjct: 5   IAVAMGGYSKEAEISLKSGEVVYKQLTKNENYRVYRAQILKNGWTIKTDIGEEIPIDKSN 64

Query: 43  GLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V+ + +P   D  FN +HG  GEDGL Q  L+ LEIP T      +AL+ +K     V
Sbjct: 65  FSVVINGEPIHFDCVFNTIHGTPGEDGLFQGYLQTLEIPQTACDYYQAALTFNKRDCISV 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + G+    +I +N+    +   I      P  +K  + GSS GI  +K    I   L 
Sbjct: 125 LRANGIKTAKNIYINKGDDINPSAIVEYIGLPCFVKANRAGSSYGISKVKHKDDILTALE 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTH 213
            S      D+++IE ++DG E++ GV+      +            +          S  
Sbjct: 185 HSF--KEDDEVIIESFLDGTEVSVGVINIKGNIIALPVTEIISENEFFDFEAKYLGKSKE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA I     K+V+  A    + +  +G++RS+F+F   + +  +LE N  PG+T  SI
Sbjct: 243 ITPATISDSQTKDVKDQAVRIFKLLKLKGLTRSEFIF--HNNEPHFLECNACPGLTEASI 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S ++L    VE A
Sbjct: 301 LPQQAKAAGISLQDLFTNAVEVA 323


>gi|262340912|ref|YP_003283767.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272249|gb|ACY40157.1| D-Alanine-D-alanine ligase [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 327

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/326 (26%), Positives = 151/326 (46%), Gaps = 34/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +AV+MGG + E  +SL SGK     L    F+  ++ +                    D 
Sbjct: 4   IAVIMGGYTKESAISLQSGKVVYENLCREEFEPYKVYIFEEKWFMKDEQNKEYTVDKYDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           SV +    ++ D  FN +HG  GEDGL+QA  ELL IPYT      + ++ +K     ++
Sbjct: 64  SVDIGSKRIQFDCVFNAIHGTPGEDGLLQAYFELLRIPYTGCNFHHANMTFNKKYCLTLL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    SI +N+  +  +  I      P  +KP + GSSLGI  + ++  +   + +
Sbjct: 124 RHFGINTAVSIFLNKNQIFCKEKILKKVGLPCFVKPNRSGSSLGISKVYEETDLFNAVKK 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHV 214
           +      ++++IE +++G E++ GV    +               +       S  S  +
Sbjct: 184 AF--KEDEEIIIESFLEGREVSVGVFSFKNKIFVLPITEIISQNDFFDFESKYSGKSQEI 241

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PAK+   I  ++Q +A   +  +   GISRS+++   ++ + ++LEIN  PG++  SIF
Sbjct: 242 TPAKLLPSIQNKIQEIAKKVYNYLNLSGISRSEYII--VNGEPYFLEINTVPGLSEESIF 299

Query: 275 PEMAAYAGYS----FRELLLWMVEDA 296
           P+    AG S    F+  + + +E A
Sbjct: 300 PKQLKTAGISLSYFFKNCINYSIEKA 325


>gi|295695685|ref|YP_003588923.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
 gi|295411287|gb|ADG05779.1| D-alanine/D-alanine ligase [Bacillus tusciae DSM 2912]
          Length = 397

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/367 (23%), Positives = 141/367 (38%), Gaps = 76/367 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-------VLAHLK--- 50
           +AV+ GG S E EVS+ + +     L    + V  + +D+            L   K   
Sbjct: 5   IAVIFGGRSVEHEVSIVTAQQIMYQLRRDLYDVMPLYIDKEGAWWTGDVLAKLESFKAAN 64

Query: 51  ---------------------------------------PDLAFNVLHGNFGEDGLVQAI 71
                                                  PD+A    HG +GEDG +Q +
Sbjct: 65  RNAALAQAARVIVVPTPGGGVIEDPQALRGLFRKPRRWTPDVAILATHGTYGEDGCLQGL 124

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QH 122
           LE+  IPYT  G+L SA+ MDK+  K V  + G+PV   I ++R              + 
Sbjct: 125 LEIAGIPYTGPGVLGSAVGMDKILMKDVFRAQGIPVVNYIWIHRDEWHEHPDEVADRVER 184

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----------GDQLLIEQYV 172
            +  P  +KP   GSS+GI   +    +   +  ++ ++             ++      
Sbjct: 185 ELQYPVFVKPSNLGSSVGIGRAEDRDGLFHAMDVAAGYDRRLLIEQGVVSPREINCSVLA 244

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG +L   +  +       ++           K  +       PA +P  + + VQ LA 
Sbjct: 245 DGQDLRVSLCEEPVSWEAFLSYEDKYIRGNFTKGQTGRRI---PADLPDGVTEAVQELAR 301

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +AI  RG++R DFL  P    ++  EIN  PG    S+   +   +G SF +LL  +
Sbjct: 302 RAFRAIQARGVARVDFLLSP-DGSIYVNEINTIPG----SLSFYLWEPSGVSFPDLLDKL 356

Query: 293 VEDASCL 299
           +EDA   
Sbjct: 357 IEDALAD 363


>gi|288925170|ref|ZP_06419105.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315607391|ref|ZP_07882390.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
 gi|288337935|gb|EFC76286.1| D-alanine--D-alanine ligase [Prevotella buccae D17]
 gi|315250948|gb|EFU30938.1| D-alanine-D-alanine ligase [Prevotella buccae ATCC 33574]
          Length = 331

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/324 (24%), Positives = 140/324 (43%), Gaps = 31/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-----------------VDRSVG 43
           +A++ GG SSE +VSL S +   S  +   + V  +D                 +D++  
Sbjct: 8   IAIVCGGDSSEHDVSLRSAQGLYSFFDKERYHVYIVDVKGTDWHVNLDNGDIVPIDKNDF 67

Query: 44  LVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             +        D A+  +HG  GE+G++Q   +L+ +PY+ SG+L  AL+ +K      +
Sbjct: 68  SFVQAGTTVYFDYAYITIHGQPGENGVMQGYFDLIHLPYSTSGVLVEALTFNKYVLNNYL 127

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GV V  S       +    + +  +  P  +KP   GSS G+  +K+   +   L  
Sbjct: 128 RSFGVNVADSLLLRRGESYDEKEIERRLGMPCFVKPAADGSSFGVSKVKEADRLAPALRV 187

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      D++++E ++DG+E++ G+       V   A        +       +     +
Sbjct: 188 AFM--ESDEVMVEGFLDGMEISQGIYKTKEKTVVLPATEVVTSNEFFDYDAKYNGQVKEI 245

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPV 271
            PA++  +   +V       ++ +   GI R D++    S     V  LEIN  PGMT  
Sbjct: 246 TPARLSPETAAKVSAETARIYELLHANGIIRIDYIISKDSEGCDVVNMLEINTTPGMTAT 305

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S  P+    AG   +E+L  +VE+
Sbjct: 306 SFIPQQVRAAGLDIKEVLTEIVEN 329


>gi|313898581|ref|ZP_07832116.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
 gi|312956465|gb|EFR38098.1| D-ala D-ala ligase N-terminal domain protein [Clostridium sp. HGF2]
          Length = 384

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/355 (22%), Positives = 138/355 (38%), Gaps = 64/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV  GG S E E+S+ S +   +AL++  +++  + + +   +                
Sbjct: 5   IAVAFGGRSVEHEISVLSAQQVMAALDEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64

Query: 50  --------------------------------KPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                           + DL F VLHG  GEDG  Q  L+ + I
Sbjct: 65  EFIADHTSVALIRRDAHTYLIPSRRKLFARDKEVDLVFPVLHGTNGEDGTFQGYLKTIGI 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           PY    +LA A+  DK+  KQV+                  + +        +  P +IK
Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLSVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLD 188
           P   GSS+GI V   D  +   ++++  ++H   ++ +      E+   V          
Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH-KVVIEKVIEPLREINASVLGDEDGCRCS 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCR 241
             E  V + +  SY+ KYS    +  +       PA++  +  +EV+ +A  A +A+   
Sbjct: 244 TLEEVVKQDEILSYDNKYSGQGKSKGMLSTSRKLPAELSDEQAEEVRTMAMDAFRALNAA 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+ R DFL    S  ++  EIN  PG    S+   +    G SF  LL  ++  A
Sbjct: 304 GVVRIDFLMHADSSALYVNEINTIPG----SLSFYLWEKEGLSFPALLDELISLA 354


>gi|169823960|ref|YP_001691571.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
 gi|190359129|sp|B0S093|DDL_FINM2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167830765|dbj|BAG07681.1| D-alanine-D-alanine ligase [Finegoldia magna ATCC 29328]
          Length = 350

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 146/334 (43%), Gaps = 44/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S+E EVS++S +   + L    + V+ I V R+   +                 
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66

Query: 46  -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                        +  + P+  + F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146
           MDK  +  +     +P    +++ +    +   I         +KP   GSS+G++  + 
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDDYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203
           ++ +   +  +    +  ++L+E+ + G EL   VMG+ +          +   +F+ Y+
Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  EIN
Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302

Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
             PG+TP S+FP +       S  E+   ++  A
Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336


>gi|306823715|ref|ZP_07457090.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|309803027|ref|ZP_07697128.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553422|gb|EFM41334.1| D-alanine-D-alanine ligase [Bifidobacterium dentium ATCC 27679]
 gi|308220494|gb|EFO76805.1| D-ala D-ala ligase N-terminal domain protein [Bifidobacterium
           dentium JCVIHMP022]
          Length = 378

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/370 (21%), Positives = 143/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + ++   ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 66  PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
           ++ +PY   G+LASA  MDK  +K ++++ G+PV P I ++    D+             
Sbjct: 126 MMNVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITLDARDYDAACAFAANGETMLA 185

Query: 125 -------SPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G+  ++++            + +H  ++L+EQ +D  E
Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + D    + P                               +PA +P +  
Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + V+  A  A +A+   G+SR D        KV   EIN  PG TP+S++P+     G S
Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLISTLIE 374


>gi|90577824|ref|ZP_01233635.1| D-alanylalanine synthetase [Vibrio angustum S14]
 gi|90440910|gb|EAS66090.1| D-alanylalanine synthetase [Vibrio angustum S14]
          Length = 331

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG S+E EVSL S       L+   G   +++++ ++ G + A  +           
Sbjct: 8   LLCGGGSAEHEVSLVSANFIEEQLKTINGVTYTRVEMTKNDGWLDAENRSCELNLDKTLI 67

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++L +  +P+   G  AS    +K+ +K    + 
Sbjct: 68  VGDQEVVIDYVIPCVHGFPGETGDLQSLLTIAGLPFLGCGAEASTNCFNKITTKLWFDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +                        +K    GSS+G   +  +Q +   +  +
Sbjct: 128 NIPNTPYVFLSENNQEAHQEARDAFSKWGKVFVKAACQGSSVGCYCVTTEQELTDAVNNA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKY--SSLNS 211
               + DQ+LIE+ +   EL           V         P   FYSYE KY   S+++
Sbjct: 188 F--GYSDQVLIEKAIRPRELEIAAYQYGDELVITKPGEVSCPTDKFYSYEEKYSADSVST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  D  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+
Sbjct: 246 TMVEAENLTEDQIEAIRTYARKAFVQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+ F E +   ++ A
Sbjct: 305 SMFPKMLEHHGHKFAEFIEQAIKSA 329


>gi|260663306|ref|ZP_05864197.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
 gi|260552158|gb|EEX25210.1| D-alanine-D-alanine ligase [Lactobacillus fermentum 28-3-CHN]
          Length = 377

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S       ++   + VS     +   L+               
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVKEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +               +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +  ++     +  + ++++   +              +  +  +      +   
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   +    +           LP  +  D+ KE+  +A  A++A+G +G++R DFL D  
Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +  E N  PG T +S++P+M   +G S+ EL+  +++ 
Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348


>gi|227514491|ref|ZP_03944540.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|227087177|gb|EEI22489.1| D-alanine--D-alanine ligase [Lactobacillus fermentum ATCC 14931]
 gi|299782964|gb|ADJ40962.1| D-alanine--D-alanine ligase [Lactobacillus fermentum CECT 5716]
          Length = 377

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S       ++   + VS     +   L+               
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +               +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +  ++     +  + ++++   +              +  +  +      +   
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   +    +           LP  +  D+ KE+  +A  A++A+G +G++R DFL D  
Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +  E N  PG T +S++P+M   +G S+ EL+  +++ 
Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348


>gi|184154927|ref|YP_001843267.1| D-alanyl-alanine synthetase A [Lactobacillus fermentum IFO 3956]
 gi|229485961|sp|B2GAV5|DDL_LACF3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183226271|dbj|BAG26787.1| D-alanine-D-alanine ligase [Lactobacillus fermentum IFO 3956]
          Length = 377

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/342 (21%), Positives = 137/342 (40%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S       ++   + VS     +   L+               
Sbjct: 8   VALLFGGNSSEHDVSKRSAHNIYDGMDKDKYDVSIFMFTKDGILLDNEASQRIFDGEPED 67

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + D  + V+HGN GEDG VQ +  LL+ PY  SG
Sbjct: 68  QVVQEAYQKMDLDAPLAPIAALSTVKEIDFFYPVIHGNLGEDGTVQGLFRLLKKPYIGSG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGS 137
           I +SA+S DK  +K++++  G+     +               +  +     +KP K GS
Sbjct: 128 IASSAMSFDKDLTKRILNQAGIRNTKYLLVTPQNKDQYSWSRIKEELGDLVFVKPAKQGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+GI  +  ++     +  + ++++   +              +  +  +      +   
Sbjct: 188 SVGIHKVDTEEEYETAMKDAFTYDYKVLVEAGIKNPREIEISILGNENPIASKLGGIRVP 247

Query: 198 DFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           +   +    +           LP  +  D+ KE+  +A  A++A+G +G++R DFL D  
Sbjct: 248 EGDEFYDYENKFVDASGVVFDLPVIVDDDLAKEITDMALKAYEALGMKGMARIDFLVDE- 306

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
               +  E N  PG T +S++P+M   +G S+ EL+  +++ 
Sbjct: 307 DGVPYLGEPNTLPGFTNISLYPQMWNISGISYSELIDRLIQL 348


>gi|255692431|ref|ZP_05416106.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
 gi|260621899|gb|EEX44770.1| D-alanine--D-alanine ligase [Bacteroides finegoldii DSM 17565]
          Length = 324

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 81/321 (25%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG +SE  VSL S +   S ++   + +  +++                    D 
Sbjct: 5   IAIVAGGDTSEIVVSLRSAQGIYSFIDKEKYNLYIVEMEGRRWEVQLPDGNKVPVDRNDF 64

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GEDG +Q   ++L IPY+  G+LA+A++ DK    Q +
Sbjct: 65  SFTNGTEKVVFDFAYITIHGTPGEDGRLQGYFDMLRIPYSCCGVLAAAITYDKFACNQYL 124

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GV +  S       +    D    I  P  IKP  GGSS G+  +K  + I   +++
Sbjct: 125 KAFGVRIAESLLLRQGQSVSDEDVIEKIGLPCFIKPSLGGSSFGVTKVKTKEQIQPAVVK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           +      +++++E +++G ELTCG        V            +       +     +
Sbjct: 185 AFGEA--EEVIVEAFMEGTELTCGCYKTKEKSVVFPPTEVVTHNEFFDYDAKYNGQVDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I  ++   VQ+L    +  +GC GI R D++      K+  LE+N  PGMT  S  
Sbjct: 243 TPARISPELTGRVQKLTSAIYDILGCSGIIRVDYIVTA-GEKLNLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+    AG   ++++  ++E+
Sbjct: 302 PQQVRAAGLDIKDVMTDIIEN 322


>gi|218281654|ref|ZP_03488055.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
 gi|218217261|gb|EEC90799.1| hypothetical protein EUBIFOR_00622 [Eubacterium biforme DSM 3989]
          Length = 358

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 87/338 (25%), Positives = 146/338 (43%), Gaps = 44/338 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            V+ GG SSE  VSL S  +    +    ++++ I ++++    L +             
Sbjct: 14  GVVFGGQSSEYSVSLHSVTSFLRQIHADNYEMTLIGINKNGHFYLYNGDVDSIEHDTWEN 73

Query: 49  -----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  ++ D  F VLHG  GEDGL+Q +LEL+ I Y    ++
Sbjct: 74  EETCVSCAWVNGGIMPLDGSNKVIELDCVFPVLHGKNGEDGLIQGLLELMNIHYVGCDVM 133

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLG 140
           +SA+SMDK     +     +P    I +            Q  I  P++IKP   GSS G
Sbjct: 134 SSAMSMDKEIMHILCKEAKIPCADYICLYANRENPTFEQIQEKIELPWIIKPCNAGSSYG 193

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--TEIAVPKSD 198
           +  +   +        +  ++   ++L+E+ + G E+ C VMG+  +     +       
Sbjct: 194 VHFVNNKEEFESACKDAFFYDGRGKILVEKVIKGFEIGCAVMGNEEIFTGSIDEIEITGG 253

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY    +    PA+I    +KE Q LA   + A+ C G++R D       ++V 
Sbjct: 254 FFDFEGKYEMKGAAIYCPARIDEKTFKEAQELARKTYIAMNCCGMARVDMFVTE-DKEVI 312

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG+T  S +P M   AG  F +L+  ++E A
Sbjct: 313 LNELNTIPGLTATSRYPSMMKVAGIEFADLIDKLIELA 350


>gi|315022540|gb|EFT35567.1| D-alanyl-alanine synthetase A [Riemerella anatipestifer RA-YM]
          Length = 318

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 85/323 (26%), Positives = 150/323 (46%), Gaps = 33/323 (10%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48
           MGG S E +VSL SG+    +L+   + V ++ V +     L                  
Sbjct: 1   MGGYSDEYKVSLKSGQLIYDSLDRDLYNVYKVVVLKEGWFYLDENEAKLPIQKGDFSVNL 60

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                L+ D+ FN++HG  GE+G++QA  + +   YT      SAL+ +K  +  V++  
Sbjct: 61  PSGEVLRFDVCFNIIHGTPGENGVLQAYWDAIGQKYTGCDFYQSALTFNKKDTLAVLAKY 120

Query: 104 GVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           G+P   S  +            + +  P  +KP + GSSLGI  +K+       L ++  
Sbjct: 121 GIPSAKSFYIKKGEAYDKDKIINELKLPLFVKPNQSGSSLGISKVKEVSEFEAALEKAF- 179

Query: 160 WNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
               D++L+E ++DG+E++       G+  +      +P+++F+ YE K     S  ++P
Sbjct: 180 -LEDDEVLVESFLDGMEVSVGVLDYKGETIVLGITEIIPETEFFDYEAK-YQGASQEIIP 237

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A++       V+ +A  A+  +G +G SRS+++   +    + LE+N  PG +P SI P+
Sbjct: 238 ARLDEATRLRVEEVAKRAYNYLGMKGFSRSEYII--MDGVPYMLEMNTNPGFSPASILPQ 295

Query: 277 MAAYAGYSFRELLLWMVEDASCL 299
            A   G S  +L    VE A   
Sbjct: 296 QARIYGISITDLCGNEVEKALAK 318


>gi|303234404|ref|ZP_07321043.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
 gi|302494520|gb|EFL54287.1| D-ala D-ala ligase N-terminal domain protein [Finegoldia magna
           BVS033A4]
          Length = 350

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 73/334 (21%), Positives = 146/334 (43%), Gaps = 44/334 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S+E EVS++S +   + L    + V+ I V R+   +                 
Sbjct: 7   VLYGGPSTEHEVSITSARTLINNLSKEKYNVNAIFVRRNKKFIMKENITEEIKSDEELIL 66

Query: 46  -------------LAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                        +  + P+  + F  +HG++GEDG +Q  +++L++P+    +L SAL 
Sbjct: 67  DTDLSVIESVSECIRKINPENTVIFPAIHGSYGEDGTIQGFIKVLDLPFVGCNVLGSALC 126

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP----YVIKPLKGGSSLGIIVIKK 146
           MDK  +  +     +P    +++ +    +   I         +KP   GSS+G++  + 
Sbjct: 127 MDKGYTNDIFELNKIPQAKYVVLCKNDEYNLKEIFEKTSKAVYVKPCNAGSSVGVMRAET 186

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYSYE 203
           ++ +   +  +    +  ++L+E+ + G EL   VMG+ +          +   +F+ Y+
Sbjct: 187 EEELEKAIQNAFQ--YDRRILVEEEIIGPELQIAVMGNDNPVASRPGVYQIHDVEFFDYD 244

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY+   +  + P  +   +  + + LA   ++ +   G SR D        +++  EIN
Sbjct: 245 AKYNDSKTEMLTPFPMDEKLELKARHLAEKVYKLMSLSGFSRVDMFV--KDNELWVNEIN 302

Query: 264 VQPGMTPVSIFPEMAAYAG-YSFRELLLWMVEDA 296
             PG+TP S+FP +       S  E+   ++  A
Sbjct: 303 TVPGLTPHSMFPVLWKCTNDMSVSEVFDNLIGLA 336


>gi|325849556|ref|ZP_08170794.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480037|gb|EGC83114.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 348

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/336 (22%), Positives = 142/336 (42%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE +++L S    +  L    +K+  + VD+                      
Sbjct: 6   LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 65

Query: 41  ----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                        L L     D  +    +HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G+ 
Sbjct: 126 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200
             +  + +        +  + +++L+E+ + G E+   ++G+  L  ++         F 
Sbjct: 186 KAENIKELLK--FGKEALKYDEKILVEEAIIGQEVEIAIIGENELMASKPGAYTTDHTFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D        K +  
Sbjct: 244 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 301

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F E+L  ++E+
Sbjct: 302 EINTFPGFTPTSFFARLCKISFNLEFEEILDMLIEE 337


>gi|146339809|ref|YP_001204857.1| D-alanyl-alanine synthetase A [Bradyrhizobium sp. ORS278]
 gi|190359116|sp|A4YRU4|DDL_BRASO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146192615|emb|CAL76620.1| D-alanine--D-alanine ligase A (D-alanylalanine synthetase A)
           (D-Ala-D-Ala ligase A) [Bradyrhizobium sp. ORS278]
          Length = 367

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 76/352 (21%), Positives = 136/352 (38%), Gaps = 56/352 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +A+L GG S+E +VS +S      +L+   + ++ I +      VLA             
Sbjct: 8   VAILFGGRSAEHDVSRASAANIFRSLDAGRYALTLIGITHDGRWVLADAVNDATSAALIV 67

Query: 48  ----------------------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                        L  D+ F VLHG  GEDG VQ  LEL ++ Y
Sbjct: 68  PADGPQIVLLPAGRGRALAIDGSAAAPRELAFDVIFPVLHGPNGEDGTVQGALELADVAY 127

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY-----VIKPLK 134
               +L SA +MDK  +K+++   G+P+ P + +   +  S    +         +KP  
Sbjct: 128 VGGRVLGSAAAMDKDVAKRLLRDAGLPIVPFVTMTAASPVSYDDAARAVGSSELFVKPAN 187

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD------ 188
            GSS+GI   +           +  ++    L+        E+ C V+  A         
Sbjct: 188 LGSSVGISKTRDAAEFEAACQLALRFDR-KILIERCIAPVREIECAVLEHADGQIKASEL 246

Query: 189 -VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                A     +        +  +   +PA++   + + ++++A     A+ C  ++R D
Sbjct: 247 GEIVPANSHGFYSYEAKYTDANGAALHVPAQVEPAVAQRIRKMATEVFGALCCESLARVD 306

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           F       +++  E+N  PG T +S++P+M   AG     L+  +V  A   
Sbjct: 307 FFV--RGDEIYVNEVNTLPGFTNISMYPKMWEAAGLPQPALMDELVAHALAR 356


>gi|308235015|ref|ZP_07665752.1| D-alanyl-alanine synthetase A [Gardnerella vaginalis ATCC 14018]
 gi|311114197|ref|YP_003985418.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
 gi|310945691|gb|ADP38395.1| D-alanine--D-alanine ligase [Gardnerella vaginalis ATCC 14019]
          Length = 381

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 141/372 (37%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA++++ F++ +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDESRFEIVRIAITKQGEWIVGGEDPRNFRMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAETRDVVLDPAKGADGFLVREADGTLTSLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------------------PVCPSILVN 114
           E++++PY   G+LASA  MDK  +KQ+  + G+                      +    
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDVRKFASDAANHFDAYANE 185

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                 +  +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ +D 
Sbjct: 186 ILEQVEEAKLEYPLFVKPSRAGSSFGVTKVESRDAKALADAVYEASKHDWRVLVEQGIDA 245

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222
            E+ C V+     D  + + P                               +PA +P +
Sbjct: 246 REIECAVLAARDGDEPQASWPGEVVLDKREAGEDQFYDFDSKYMDSAASHVEVPANLPEE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V+  A  A +A   RG+SR D    P    V   EIN  PG TP+S++P+     G
Sbjct: 306 TLQRVRNTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYSDLITKLIE 376


>gi|325103814|ref|YP_004273468.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
 gi|324972662|gb|ADY51646.1| D-alanine/D-alanine ligase [Pedobacter saltans DSM 12145]
          Length = 330

 Score =  143 bits (361), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 78/328 (23%), Positives = 153/328 (46%), Gaps = 35/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           +A++ GG + E  +SL+S K     L+ + + V QI +D                     
Sbjct: 5   IALVAGGFTGESVISLNSTKTVYKNLDRSKYNVYQIIIDSEKWYHEDEQGESHLIDKNDF 64

Query: 43  GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            + +   K   D AF ++HG  GEDG +Q   ++L IPYT      SA++M+K  +KQ+V
Sbjct: 65  SINIKGTKVTFDCAFIIIHGIPGEDGKLQGYFDMLNIPYTSCDATTSAITMNKGYTKQIV 124

Query: 101 S-----SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S     +    V    L +    + +  +  P  +KP  GGSS+G+  + +   +   + 
Sbjct: 125 SAVPDLNIAKSVQLFSLDSYKQAEIEQNLGLPLFVKPNNGGSSIGMSKVNEWDDLDKAVQ 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDA---SLDVTEIAVPKSDFYSYELKYSSLNST 212
           ++     G ++LIE+++ G E T G        ++      +   +F+ +E KY++  + 
Sbjct: 185 RAF--AEGSEVLIEEFISGREFTVGAYTVDGEVNVLPITEIITTKEFFDFEAKYTAGLTN 242

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V PA++  ++ + +  +    +  + C+G+ R DF+    ++  +++E+N  PG +  S
Sbjct: 243 EVTPAELDNELVERIGEIIKRTYIQLNCKGMVRIDFIL-KDNKDFYFIEVNTIPGQSENS 301

Query: 273 IFPEMAAYAGYS----FRELLLWMVEDA 296
           I P+    AG +    +  L+   ++ A
Sbjct: 302 IIPQQVRAAGLTLTYFYGNLIDEALKTA 329


>gi|117929360|ref|YP_873911.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
 gi|117649823|gb|ABK53925.1| D-alanine--D-alanine ligase [Acidothermus cellulolyticus 11B]
          Length = 333

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 96/311 (30%), Positives = 149/311 (47%), Gaps = 17/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL+S +    AL   G  V  +DVD SV   L    PD  F  +HG+ 
Sbjct: 9   VLAGGVSFEREVSLASARRVIEALRRLGVDVDLVDVDASVLDRLTADPPDAVFIAMHGSE 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--------- 113
           GEDG ++ +L+L  +PY  +    + L+ DK  +K V+ + GV    SI           
Sbjct: 69  GEDGALRELLDLAGVPYVGATAAGARLAFDKTVAKAVLQAAGVAAPRSIAFSQTAIRDLG 128

Query: 114 -NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        +  P V+KP +GGS+LG+ ++++  +    L   + + +    L+EQYV
Sbjct: 129 GHQLLDRCVRRLGLPLVVKPARGGSALGVTIVREATAFAHAL--VTCFAYDTVALVEQYV 186

Query: 173 DGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            G EL   V+ D              P    + Y  +Y++  + + +PA+I         
Sbjct: 187 VGTELAISVVEDDDGTPRALPPVEIRPVDGMFDYAARYTAGMTEYHVPARITETARDRAV 246

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +A  AHQA+G R +SR+D +       ++ LE NV PGMTP S+ P  AA  G     L
Sbjct: 247 DVALRAHQALGLRDLSRTDVIVTADDEVLY-LETNVAPGMTPTSLLPMAAAEVGIDLGTL 305

Query: 289 LLWMVEDASCL 299
              ++  A+  
Sbjct: 306 CRDLLVRAATR 316


>gi|119505118|ref|ZP_01627194.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
 gi|119459100|gb|EAW40199.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [marine
           gamma proteobacterium HTCC2080]
          Length = 309

 Score =  143 bits (361), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 97/292 (33%), Positives = 147/292 (50%), Gaps = 6/292 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AVLMGG ++ERE+SL SG+  AS LE AG  V++ID              D  FN+LHG 
Sbjct: 12  AVLMGGAAAEREISLQSGENVASVLEAAGCPVTRIDPA-VEQWADQLSDIDFVFNLLHGP 70

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG++Q + +++ +PY+ SG+L SAL+MDK R+KQ+ S  G+P     L+   T  S 
Sbjct: 71  GGEDGVLQGLFDVMNLPYSGSGVLGSALTMDKARTKQLWSGMGLPTPDFTLLTADTDWSD 130

Query: 122 -HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                    +KP   GSS+G+      + +     ++ ++  G  ++ E +V G E T  
Sbjct: 131 LIERHGTLFVKPALEGSSIGMSKASTPEQLEAAWKRARAYKGG--IIAECFVAGEEYTVS 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD +L       P S+FY ++ KY S N+    P+ +      E+  LA  A  A+  
Sbjct: 189 ILGDRALPAI-RIEPASEFYDFDAKYVSDNTGFFCPSGLTASDEAELSALALRAFYAVDA 247

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               R D + D  S     LE+N  PGMT  S+ P  A     +  + L  +
Sbjct: 248 AVWGRVDVMRDI-SGAWQLLEVNTIPGMTSHSLVPMAARADSMTLIDFLSEI 298


>gi|220906629|ref|YP_002481940.1| D-alanyl-alanine synthetase A [Cyanothece sp. PCC 7425]
 gi|219863240|gb|ACL43579.1| D-alanine/D-alanine ligase [Cyanothece sp. PCC 7425]
          Length = 349

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 86/348 (24%), Positives = 148/348 (42%), Gaps = 58/348 (16%)

Query: 1   MAVLMGGISSEREVS----------LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-- 48
           + +L GG S E EVS          L++            + V    + ++         
Sbjct: 5   VGLLFGGCSGEHEVSIASARAIARALTTAPN------SDRYTVLPFYIQKNGFWQGEEIA 58

Query: 49  ----------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                                          D+ F +LHG  GEDG VQ +L+L++ P+ 
Sbjct: 59  QQVLESGVPLADPVEGQPTQLWSFPHAAETVDVWFPILHGPNGEDGTVQGLLKLMQRPWV 118

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------------PPY 128
            SG+LASA  MDK+  K + ++ G+P    + VNR  + S   +              P 
Sbjct: 119 GSGVLASAAGMDKIMMKTIFAAAGLPQVKYLAVNRSQLWSDPCVYTKLCDRIDTTLGYPC 178

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP   GSS+GI  ++    +   L  ++S++    +        +E +          
Sbjct: 179 FVKPANLGSSVGITKVRNRPQLETALENAASYDRRLVVETGVIAREVECSVLGNDHPRAS 238

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           V       SDFY YE KY+   ++ ++PA +P  I  ++Q +A  A  AI   G++R DF
Sbjct: 239 VVGEITYSSDFYDYETKYTDGRASLIIPADLPPAIVTQIQEMALTAFTAIDAAGLARVDF 298

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   + ++   EIN  PG T  S++P++ A +G +F +L+  +++ A
Sbjct: 299 FYLESTGEILINEINTLPGFTAFSMYPQLWAASGVTFPDLVDQLIQFA 346


>gi|325281885|ref|YP_004254427.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
 gi|324313694|gb|ADY34247.1| D-alanine--D-alanine ligase [Odoribacter splanchnicus DSM 20712]
          Length = 326

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/321 (25%), Positives = 143/321 (44%), Gaps = 30/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQ----------------IDVDRSVGL 44
           + V+ GG SSE EVS+ SG    S ++   +                      VD++   
Sbjct: 5   VVVIAGGNSSEYEVSIKSGNHIFSEVDGEKYNKYLMILRGRDWMVEIGDQKFPVDKNDFS 64

Query: 45  VLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                K    D A+  +HGN GE+G++Q  L+++ +PY+    L  A++ DK      ++
Sbjct: 65  FEYQGKKVVFDFAYITIHGNPGENGMLQGYLDMMGVPYSTCNTLVEAITFDKYTCTNYLN 124

Query: 102 SCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + G+     I++ R     +      +  P  IKP   GSS G+  +K        +  +
Sbjct: 125 AFGINTTHPIMLVRGKAFDKEAVLKAVGLPCFIKPNAEGSSFGVSKVKTAADFDAAVEGA 184

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                  ++L+E ++DGIE TCG+        +      VPK +F+ YE KY +  S  +
Sbjct: 185 FKMC--REILVESFIDGIEFTCGLYKVGDKKVVMPVAEVVPKKEFFDYEAKYDAKMSDEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           +P +   +I   +Q +A   +  + C GI R D        ++  LE+N  PGMT  S  
Sbjct: 243 IPGRFSAEITGRIQDMASEVYDILRCEGIVRIDGFV--RGEEIIMLEVNTTPGMTANSFV 300

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+M    G   R+++  ++E+
Sbjct: 301 PKMVRVMGLPLRDVITGIIEE 321


>gi|120437021|ref|YP_862707.1| D-alanyl-alanine synthetase A [Gramella forsetii KT0803]
 gi|190359136|sp|A0M4U5|DDL_GRAFK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117579171|emb|CAL67640.1| D-alanine--D-alanine ligase [Gramella forsetii KT0803]
          Length = 326

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 87/323 (26%), Positives = 153/323 (47%), Gaps = 32/323 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+ MGG SSE  +S++SG      L+   ++  ++ + +    V+A             
Sbjct: 5   IAIAMGGYSSEYRISINSGNIVYKHLDHDLYEPYRVHILKGEWFVVADDDTPYPINKSNF 64

Query: 49  --------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   ++ D  FN +HG  GE+GL+QA LEL+ IP T      SAL+ +K     V+
Sbjct: 65  TVKINDKVIQFDCVFNTIHGTPGENGLLQAYLELIGIPQTSCDYYQSALTFNKRDLISVL 124

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+    +  +N+    +   I      P  +K  + GSS G+  +K +  I      
Sbjct: 125 RPYGIKAATNYFLNKDQEINTKEIVDKVGLPCFVKANRAGSSFGVTKVKTEDEIISAAKT 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTH 213
           +      D+ +IE ++DG E++ GV+              +P  +F+ YE K     S  
Sbjct: 185 AF--TEDDEAIIESFLDGTEVSVGVITYKGKVLALPVTEIIPDGEFFDYEAK-YLGKSQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  K+VQ +A + ++ +  +G+SRS+F+F     +  ++E+N  PG++  SI
Sbjct: 242 ITPARISEEDTKKVQDIAIMIYKKLKMKGLSRSEFIFHE--GEPHFIEMNTNPGISQASI 299

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P+ A  AG S ++L    +E A
Sbjct: 300 LPQQAEKAGISLKDLFGSTIEAA 322


>gi|212697006|ref|ZP_03305134.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212676004|gb|EEB35611.1| hypothetical protein ANHYDRO_01571 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 352

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 77/336 (22%), Positives = 142/336 (42%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE +++L S    +  L    +K+  + VD+                      
Sbjct: 10  LLCGGPSSEHDIALRSALNISKNLNKEKYKLKLVYVDKKGRFSKAFDFIDTDDEFDLVKT 69

Query: 41  ----------SVGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                        L L     D  +    +HG +GEDG +Q  L+ +++ Y  +G+L+S+
Sbjct: 70  CKENILESISDFLLELKDKDKDNTIIIPCIHGTYGEDGTIQGFLDAIDMAYIGNGLLSSS 129

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +     T +       Q  I  P ++KP   GSS+G+ 
Sbjct: 130 VCMDKVTANDIFEKNKLSQARYLYAKEETFNEDFAKKCQEYIKFPMIVKPSANGSSVGVN 189

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200
             +  + +        +  + +++L+E+ + G E+   V+G+  L  ++         F 
Sbjct: 190 KAENIEELLK--FGKEALKYDEKILVEEAIIGQEVEIAVIGENELMASKPGAYTTDHTFL 247

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++   LP  I  ++ KE+   A   ++A GC+G +R D        K +  
Sbjct: 248 DYDAKYFDKSTKEELPYPIDENLEKELLEFAKKCYKACGCQGFARVDIFL--KDNKFYIN 305

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F E+L  ++E+
Sbjct: 306 EINTFPGFTPTSFFARLCKISFNLEFEEILNMLIEE 341


>gi|332292608|ref|YP_004431217.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332170694|gb|AEE19949.1| D-alanine--D-alanine ligase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 332

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/324 (27%), Positives = 145/324 (44%), Gaps = 33/324 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL-VLAHLKP-----DLA 54
           +AVLMGG SSE ++SL+SG    ++L+   ++V  + + +     V+   +      D +
Sbjct: 6   IAVLMGGYSSEYQISLNSGATVVASLDKEKYQVYAVHILKEGWFCVIDGERFAIDKGDFS 65

Query: 55  F--------------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           F              N +HG  GEDG +QA LELL IP T      SA++ +K  +  V+
Sbjct: 66  FIDAFAKKVTFQACYNTIHGTPGEDGKLQAYLELLGIPQTSCDFYESAMTFNKRDTLSVL 125

Query: 101 SSCGVPVCPSIL-------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           SS GVP+  S+           F       +  P  +KP + GSS G+  + K+  +   
Sbjct: 126 SSYGVPMAQSVYVNKGDVIDMPFKNSLALKVGYPCFVKPNRAGSSYGVSKVYKEGDLEQA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNS 211
           L    +++   Q+LIE ++ G E++ GV           A        +       S  S
Sbjct: 186 L--EHAFSEDSQVLIESFLSGTEVSVGVYNFGGETQVLPACEIVPDGDFFSLEAKYSGKS 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             ++PA++      EVQ L    +  +  +GI R DF+F     K  ++E+N  PG++  
Sbjct: 244 QEIVPARLSEKETNEVQGLTKGIYDLLSLKGICRVDFIFHE--GKPHFVEVNTNPGLSKE 301

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           SI P     AG S  E+    +E 
Sbjct: 302 SIIPREFKAAGLSLAEVFGEAIEH 325


>gi|297564289|ref|YP_003683262.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848738|gb|ADH70756.1| D-alanine/D-alanine ligase [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 350

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 83/344 (24%), Positives = 151/344 (43%), Gaps = 51/344 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG + E +VS +S  +  + L+   ++V  + + R+                   
Sbjct: 8   VAVVFGGRNGEYDVSCASAMSVLTHLDRDRYEVVPVRITRAGAWVVGTDTDDPAALDAER 67

Query: 45  -----------------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  +LA  + D+ F V+HG +GEDG +Q +LELL +PY  
Sbjct: 68  LTALTPEPGGERERRPGDGLGEAILALGEADVVFPVIHGPYGEDGTIQGMLELLGVPYVG 127

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGS 137
           +G+LASA  MDK  +K ++ + G+PV   +      +  +   +  +  P  +KP + GS
Sbjct: 128 NGVLASATGMDKATTKTLLRAAGLPVARDVVLRGPDDEVSPQERAELGLPVFVKPARSGS 187

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-----DVTEI 192
           SLG+  +     +   +  +       ++L+E+ V G E+   V+             EI
Sbjct: 188 SLGVTRVGDWSELEAAVKTAR--EFDTKVLVEEAVVGREVDLAVLELPDGALKVGPPLEI 245

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V  ++ +         ++   +PA +P+ I  ++  LA    +A+GC G+ R DF    
Sbjct: 246 RVADTERFFDYDTKYGGDAVFDIPADLPVGIQTQLSDLALGVFEAVGCSGLLRVDFFLRG 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + +    E+N  PG T  S +P++    G  + ELL  ++  A
Sbjct: 306 GT-EPVVNEVNTLPGFTAHSQYPQIWRATGLEYPELLDSLIRTA 348


>gi|189347029|ref|YP_001943558.1| D-alanyl-alanine synthetase A [Chlorobium limicola DSM 245]
 gi|229463739|sp|B3EDF4|DDL_CHLL2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189341176|gb|ACD90579.1| D-alanine/D-alanine ligase [Chlorobium limicola DSM 245]
          Length = 363

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 90/351 (25%), Positives = 158/351 (45%), Gaps = 57/351 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A+L GG S+E E+S+ S ++ + A++   ++V  + +                      
Sbjct: 6   IALLFGGKSTEHEISIISARSISGAIDRERYRVVPVYITHEGAWFSGDSAAEILSLDLSS 65

Query: 46  -----------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                              D+ F  LHG++GEDG VQ +L+ + 
Sbjct: 66  IMRKSSVGNTETLLREMIRNSAEKPFDFNFRAAGIDVVFIALHGSYGEDGRVQGLLDTMG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPP 127
           IPYT  G+ ASA++MDK  +K   +  GV   PSI ++  +  +               P
Sbjct: 126 IPYTGCGVSASAIAMDKALTKLCAADAGVATAPSITLDADSYLADPEPVHELVDSTFGYP 185

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI  +    ++P  L  +   ++  ++L+E  V G E+   V+G+   
Sbjct: 186 LFVKPASLGSSVGISKVHLPAALPEALKVAC--SYDRKILVEAAVSGKEIEVAVLGNDRP 243

Query: 188 DVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +      P SDFY ++ KY    +   +PA++P  +   V+  A   ++A+GCRG+SR
Sbjct: 244 VASVPGEVEPGSDFYDFQDKYIHNTAKTFIPARLPDKLLDSVRCSAITVYKALGCRGMSR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  +  +  +   EIN  PG T +S++P++   +G  F  L+  ++  A
Sbjct: 304 VDFFVNEENGSIVLNEINTIPGFTDISMYPKLFEASGIPFTALIDKLLHYA 354


>gi|293191001|ref|ZP_06609045.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
 gi|292820688|gb|EFF79654.1| D-alanine--D-alanine ligase B [Actinomyces odontolyticus F0309]
          Length = 342

 Score =  143 bits (360), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLADAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+     + + +       
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI   +  +++   +    ++ +G +L++EQ +
Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAM--VDAFAYGQRLMVEQRI 184

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG ++   V+                    Y Y+ +Y++  + + +PA++  ++  ++Q 
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVSTDRGRYDYDARYTTDETEYFVPARLSDELLADLQA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288
            A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +L
Sbjct: 245 AAVEAHTTLGLRDLSRMDFVVDDE-GTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQL 303

Query: 289 LLWMVEDASCLR 300
              +V+  +  R
Sbjct: 304 CADIVDFVAGGR 315


>gi|309774770|ref|ZP_07669792.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
 gi|308917455|gb|EFP63173.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium 3_1_53]
          Length = 384

 Score =  143 bits (359), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 137/355 (38%), Gaps = 64/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           +AV  GG S E E+S+ S +   +A+ +  +++  + + +                    
Sbjct: 5   IAVAFGGRSVEHEISVLSAQQVMAAMNEERYEILPLYIAKDGRMFCEEELRELETFQHIE 64

Query: 44  --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                     L     + DL F VLHG  GEDG  Q  L+ L +
Sbjct: 65  EFIADHDSVSLIRRDAHTYLIPSRRRLFAKEREVDLVFPVLHGTNGEDGTFQGYLKTLGV 124

Query: 78  PYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           PY    +LA A+  DK+  KQV+                  + +        +  P +IK
Sbjct: 125 PYVGCSVLAGAIGQDKVIMKQVLQDSGLRVVPWFFWTLHQPMEQSFFKKAQRLGYPLIIK 184

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASLD 188
           P   GSS+GI V   D  +   ++++  ++H   ++ +      E+   V          
Sbjct: 185 PANLGSSVGIAVAHNDVELHKSMIEAFQYDH-KVVIEKVIEPLREINASVLGDEDGCRCS 243

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQRLAFLAHQAIGCR 241
             E  + + +  SY+ KY     +  +       PA++  +  +EVQR+A    +++   
Sbjct: 244 TLEEVIKQDEILSYQDKYHGQGKSKGMVSTSRKLPAELTEEQTEEVQRMAMDTFRSLNAA 303

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+ R DFL    S +++  EIN  PG    S+   +    G SF  +L  ++  A
Sbjct: 304 GVVRIDFLMQQDSGELYVNEINTIPG----SLSFYLWEQEGLSFSAMLDELIALA 354


>gi|167750589|ref|ZP_02422716.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
 gi|167656515|gb|EDS00645.1| hypothetical protein EUBSIR_01565 [Eubacterium siraeum DSM 15702]
          Length = 397

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + V  GG S E EVS+ S     +++    ++V  + + ++                 + 
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 44  LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
            +L   +                             D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESRRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KP+  GSS+GI++   D+ +   L  + ++     L+     +  E+ C V GD +
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233
                      +            +                +PA I  +  ++++ LA  
Sbjct: 244 TAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAVK 303

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M+
Sbjct: 304 AFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359

Query: 294 EDA 296
             A
Sbjct: 360 SLA 362


>gi|313139503|ref|ZP_07801696.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
 gi|313132013|gb|EFR49630.1| D-alanine-D-alanine ligase [Bifidobacterium bifidum NCIMB 41171]
          Length = 394

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 22  VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 81

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 82  PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 141

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+    +        
Sbjct: 142 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 201

Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V     +  L      + +H  ++LIEQ +D  E
Sbjct: 202 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 261

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   +    + + P                               +PA +P +  
Sbjct: 262 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 322 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 380

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 381 YTELITKLID 390


>gi|310286804|ref|YP_003938062.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
 gi|309250740|gb|ADO52488.1| D-alanine--D-alanine ligase [Bifidobacterium bifidum S17]
          Length = 381

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+    +        
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V     +  L      + +H  ++LIEQ +D  E
Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   +    + + P                               +PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|224282359|ref|ZP_03645681.1| D-alanyl-alanine synthetase A [Bifidobacterium bifidum NCIMB 41171]
          Length = 381

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVVLGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+    +        
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V     +  L      + +H  ++LIEQ +D  E
Sbjct: 189 RVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   +    + + P                               +PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGDDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAVKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|154508227|ref|ZP_02043869.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797861|gb|EDN80281.1| hypothetical protein ACTODO_00721 [Actinomyces odontolyticus ATCC
           17982]
          Length = 342

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 85/312 (27%), Positives = 160/312 (51%), Gaps = 17/312 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L   G+ V   DVD S+   ++   PD+ + ++HG+ 
Sbjct: 7   IIAGGLTHERDVSVRSGRRVANILTQFGYDVRISDVDASLAEAISSFSPDVVWPLVHGSI 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q+ LE L IP+  S  + + L+ +K  +K ++ S G+     + + +       
Sbjct: 67  GEDGSLQSFLESLGIPFVGSSSVQAMLASNKPTAKALLGSAGLATPGWVTLPQAIFRQLG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +  +S P VIKP  GGS+LGI   +  +++   +    ++ +G +L++EQ +
Sbjct: 127 ASHVLSALEGSVSFPVVIKPTDGGSALGISTAQDAKALRRAM--VDAFAYGQRLMVEQRI 184

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG ++   V+                    Y Y+ +Y++  + + +PA++  ++  ++Q 
Sbjct: 185 DGRDVAVSVVDLWDGPVALPPVEVSTDRGRYDYDARYTTDETEYFVPARLSDELLADLQA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288
            A  AH  +G R +SR DF+ D      ++++ NV PGMT  S+ P+ A      SF +L
Sbjct: 245 AAVEAHTTLGLRDLSRMDFVVDDE-GTCWFIDANVAPGMTDTSLLPQAADALEDSSFAQL 303

Query: 289 LLWMVEDASCLR 300
              +V+  +  R
Sbjct: 304 CADIVDFVAGGR 315


>gi|311063700|ref|YP_003970425.1| d-alanine--d-alanine ligase DdlA [Bifidobacterium bifidum PRL2010]
 gi|310866019|gb|ADP35388.1| DdlA D-alanine--D-alanine ligase [Bifidobacterium bifidum PRL2010]
          Length = 381

 Score =  143 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 84/370 (22%), Positives = 144/370 (38%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + +    ++    P         
Sbjct: 9   VVVMYGGKADEHSISCISTAGVLRALDTDRFEPVPVGITKQGQWIVDGEDPRGWDMADGL 68

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q +LE
Sbjct: 69  PVVEKTPGSRDVVLDVALGQDGFFARNDDGTLSSLGHVDAVLPVLHGPYGEDGTIQGLLE 128

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-------- 125
           ++++PY   G+LASA  MDK  +K ++++ G+PV P I V+    D+    +        
Sbjct: 129 MMDVPYVGCGVLASAACMDKHYTKVLLAAAGIPVAPGITVDARGFDAASRFAADADGLLA 188

Query: 126 --------PPYVIKPLKGGSSLG-IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                    P  +KP + GSS G   V     +  L      + +H  ++LIEQ +D  E
Sbjct: 189 QVEEAGLAYPLFVKPSRAGSSFGVTKVEHAGDAAELAAAVFEASHHDWRILIEQGIDARE 248

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   +    + + P                               +PA +P +  
Sbjct: 249 IECAVLCPKAGSEPQASWPGEIVLDKRNSGGDQFYDFDSKYMDSSASHVEVPANLPQETL 308

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           ++V+  A  A +A+   G+SR D    P   +V   EIN  PG TP+S++P+     G  
Sbjct: 309 QQVRETAIKAFKAVDGAGLSRVDTFVTP-DGEVMVNEINTMPGFTPISMYPKAWEATGIG 367

Query: 285 FRELLLWMVE 294
           + EL+  +++
Sbjct: 368 YTELITKLID 377


>gi|282881101|ref|ZP_06289788.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
 gi|281304905|gb|EFA96978.1| D-ala D-ala ligase N-terminal domain protein [Prevotella timonensis
           CRIS 5C-B1]
          Length = 333

 Score =  143 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 80/326 (24%), Positives = 135/326 (41%), Gaps = 33/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           +A++ GG SSE +VSL S +   S  +   + V  + +                    D 
Sbjct: 8   IAIVCGGDSSEYDVSLRSAQGLYSFFDKERYHVFIVTIRGLDWNVCLEDGSTVKVDRNDF 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S       +  D A+  +HG  GE+G++Q   EL++IPY+ SG+L  AL+ +K    + +
Sbjct: 68  SFVHNGKSIIFDYAYITIHGTPGENGIIQGYFELVDIPYSTSGVLVEALTFNKFVLNRYL 127

Query: 101 SSC------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +S        + +           + +  +  P  +KP+  GSS G+  +K    +   L
Sbjct: 128 ASFGVKVAKSILLRRGEESKLSEQEIEAQLGMPCFVKPVADGSSFGVTKVKNSDQLAPAL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNST 212
             +      +  +IE Y+ G+EL+ G    +   V   A        +       +    
Sbjct: 188 RVAFMQ--NEAAMIESYMKGVELSIGCYKTSEKAVVFPATEVVTSNEFFDYDAKYNGQVQ 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVF-WLEINVQPGMT 269
            + PA+I  D  K+V       +  + C GI R D++   D     V   LE+N  PGMT
Sbjct: 246 EITPARIADDTAKKVAEETSKIYDILHCNGIIRIDYIITKDEQGNDVVNMLEVNTTPGMT 305

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S  P+    AG    E+L  +VE+
Sbjct: 306 ATSFIPQQVRAAGLDITEVLTEIVEN 331


>gi|288779631|dbj|BAI70383.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 99/346 (28%), Positives = 154/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + +L GG S ER+VSL+SG + A AL + G +V  +D      ++   L+P         
Sbjct: 3   IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAEEPVLAGPLRPGDVVDGFEV 62

Query: 52  ---------------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                                            D+ F  LHG +GEDG VQ  LE   + 
Sbjct: 63  GKEPPAGHERHGLRRRMAAAFDGGPALALLRDADVVFTALHGGWGEDGWVQERLEAAGVR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-----PPYVIKPL 133
           +T +   A A +  K R++ V+++ GVPV    L    T      +       P V KP+
Sbjct: 123 FTGADSTACAAAWHKERAQAVLAAAGVPVTERALWPAGTDGVPQEVRRLVAAGPVVAKPV 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+ +        +     +  +   G +LL+E ++ G E T GV+G   L V EI 
Sbjct: 183 ADGSSVSVHRADSLAELERLAPEMRAD--GAELLVEPFLPGREFTVGVIGGQVLPVIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFD 251
           +     + Y  KY     + V PA IP +    +Q+LA  AH+A+G      SR+DF  D
Sbjct: 241 LSTP-LFDYAAKYQPGAVSEVCPALIPEEFASRLQQLALRAHEALGFGPHTYSRTDFRCD 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             + +   LE+N  PG+T  S+ P  A+ AG+++ +L   +V  A+
Sbjct: 300 A-TGEPMCLEVNALPGLTATSLLPLAASGAGWTYADLAERIVSLAT 344


>gi|20808895|ref|NP_624066.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|39930907|sp|Q8R778|DDL_THETN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|20517553|gb|AAM25670.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 389

 Score =  142 bits (358), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 133/362 (36%), Gaps = 71/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GG S E EVS+ +G      +    ++   + V R                    
Sbjct: 4   VAVMFGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKGLLDISNYKDIP 63

Query: 49  ------------------------------------LKPDLAFNVLHGNFGEDGLVQAIL 72
                                               +  D+ F   HG  GEDG +Q + 
Sbjct: 64  SLLKKCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLF 123

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHL 123
           +L  IPY  SG++ SA  MDK+  K +  +  +P+   +   R   +          +  
Sbjct: 124 QLANIPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESK 183

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P  +KP   GSS+GI   K    +   +  +  ++    ++ E   D +E+ C VMG
Sbjct: 184 LKYPMFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR-KIIVEEAVKDPMEVNCSVMG 242

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLA 234
                   +      +  +                     +PA IP +  KE+Q LA   
Sbjct: 243 IDRDLEISLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKV 302

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            Q + C G++R DFL +  + KV+  EIN  PG    S    +    G SF +L+  ++E
Sbjct: 303 FQILDCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIE 358

Query: 295 DA 296
            A
Sbjct: 359 YA 360


>gi|261749571|ref|YP_003257257.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497664|gb|ACX84114.1| D-alanyl-alanine synthetase A [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 331

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 80/318 (25%), Positives = 145/318 (45%), Gaps = 31/318 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------DRSVGLVLAH---- 48
           +A++MGG + E  +SL SG+     L    F+V +I +        D++      +    
Sbjct: 4   IAIVMGGYTEESVISLKSGEVVYKNLSKEEFEVYKIYLFIEKWILKDKNNKEYPVNKQDF 63

Query: 49  ---------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
                    LK D  FN +HG  GEDG++QA   LL+IPYT      ++++ +K      
Sbjct: 64  TVRITNDQILKFDCVFNAIHGTPGEDGVLQAYFHLLKIPYTGCHFHHASVTFNKKYCLTF 123

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+   PS  +N+     +  I      P  +KP + GSSLGI  + +++ +   + 
Sbjct: 124 LKEFGIKTAPSFFLNKNQSFCEKKILKKVGLPCFVKPNRSGSSLGISKVYQERELAKAIE 183

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTH 213
            +       ++++E ++ G E++ GV+                   +       S  S  
Sbjct: 184 HAF--RKDQEIIVESFLKGTEVSVGVISWNQDIKVLPITEIISRNDFFDFESKYSGKSQE 241

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA++   + K++++LA   ++ +   GISRS+++   ++   F+LEIN  PG++  SI
Sbjct: 242 ITPARLLPSLEKKIKKLAKNVYEILNLSGISRSEYIL--VNGDPFFLEINTIPGLSEESI 299

Query: 274 FPEMAAYAGYSFRELLLW 291
            P+    AG S  EL   
Sbjct: 300 LPKQLKIAGISLSELFKK 317


>gi|171741431|ref|ZP_02917238.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283455223|ref|YP_003359787.1| D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
 gi|171277045|gb|EDT44706.1| hypothetical protein BIFDEN_00514 [Bifidobacterium dentium ATCC
           27678]
 gi|283101857|gb|ADB08963.1| ddlA D-alanine--D-alanine ligase [Bifidobacterium dentium Bd1]
          Length = 378

 Score =  142 bits (358), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 79/370 (21%), Positives = 139/370 (37%), Gaps = 77/370 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + V+ GG + E  +S  S      AL+   F+   + + ++   ++    P         
Sbjct: 6   IVVMYGGKADEHSISCISTAGVLRALDVEKFEAIPVGITKTGQWIVDGEDPRGWNMSEGM 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D    VLHG +GEDG +Q + E
Sbjct: 66  PIVRKTDTAKDVVLDVALGQDGFFAREADGTLTSLGHVDAVLPVLHGPYGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----------------VNRFT 117
           ++ +PY   G+ ASA  MDK  +K ++++ G+PV P I                      
Sbjct: 126 MMNVPYVGCGVFASAACMDKHYTKVLLAAAGIPVAPGITLDARDCDAACAFAANGETMLA 185

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIE 176
                 +  P  +KP + GSS G+  ++++            + +H  ++L+EQ +D  E
Sbjct: 186 AVQAAGLRYPLFVKPSRAGSSFGVTKVEREGDAAELAAAVFEASHHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+   + D    + P                               +PA +P +  
Sbjct: 246 IECAVLCPKAGDEPRASWPGEIVLDKRAGGDDQFYDFDSKYMDAEASHVEVPAALPQETL 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + V+  A  A +A+   G+SR D        KV   EIN  PG TP+S++P+     G S
Sbjct: 306 ELVRETAKKAFKAVDGTGLSRVDTFVTA-DGKVMVNEINTMPGFTPISMYPKAWDATGVS 364

Query: 285 FRELLLWMVE 294
           + +L+  ++E
Sbjct: 365 YTDLISTLIE 374


>gi|256545629|ref|ZP_05472987.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
 gi|256398706|gb|EEU12325.1| D-alanine--D-alanine ligase [Anaerococcus vaginalis ATCC 51170]
          Length = 348

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 143/336 (42%), Gaps = 47/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR---------------------- 40
           +L GG SSE E++L S    +  L+   + +  + +D+                      
Sbjct: 6   LLCGGPSSEHEIALRSALNISKNLDKNKYNLKIVYIDKKGRFSKAFDFINTDDEFELVKE 65

Query: 41  -------SVGLVLAHLK-----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                  S+   L  LK       +    +HG +GEDG +Q  L+ ++  Y  +G+L+S+
Sbjct: 66  CKENILESISDFLLELKDKDKENTIIIPCVHGTYGEDGTIQGFLDAIDTAYIGNGLLSSS 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ +  +     +     +  N  + D       +  I  P ++KP   GSS+G+ 
Sbjct: 126 VCMDKVTANDIFEKNKLKQARYLYANEESFDLDFAKKCEEYIKFPMIVKPSANGSSVGVN 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFY 200
             +    +        S  + +++L+E+ + G E+   ++GD  L  ++    V    F 
Sbjct: 186 KAENIDELLK--FGKESLKYDEKILVEEAIIGQEVEIAIIGDNKLIASKPGAYVTDHIFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY   ++  +LP  +   + K++   A   ++A  C+G +R D        + +  
Sbjct: 244 DYDAKYFDKSTKEMLPYPMDEKLEKDLLEFAKKCYKACNCQGFARVDIFL--KDNEFYIN 301

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +   +    F ++L  ++E+
Sbjct: 302 EINTFPGFTPTSFFARLCKISFDLEFSQILDMLIEE 337


>gi|258647059|ref|ZP_05734528.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
 gi|260853175|gb|EEX73044.1| D-alanine--D-alanine ligase [Prevotella tannerae ATCC 51259]
          Length = 337

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 74/326 (22%), Positives = 134/326 (41%), Gaps = 35/326 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +A++ GG SSE +VSL S     S ++   + V  +++                   D +
Sbjct: 10  IAIVAGGDSSEHDVSLRSAAGILSFMDSQKYDVYIVEIKGNNWTAHYGQEDCPIDRNDFT 69

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV-- 99
                     D A+  +HG  GE+G++Q   +L+ IPY+ S +L  AL+ +K        
Sbjct: 70  FTATDGKHAFDFAYITIHGTPGENGILQGYFDLIGIPYSTSDVLVEALTFNKYALNTFLR 129

Query: 100 ------VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                 ++     +                +  P  +KP  GGSS G+  +K   ++   
Sbjct: 130 SAADKALNIADAILVRKGETEPNDAYIVERLGLPCFVKPNAGGSSFGVTKVKTIDAVRPA 189

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVM---GDASLDVTEIAVPKSDFYSYELKYSSLN 210
           +    +    D+++IE+ + G E+TCG      +         V + +F+ Y+ K  +  
Sbjct: 190 I--EKALLESDEVMIEKMIVGTEITCGAYKKGNEIITFPITEVVTEEEFFDYDAK-YNGK 246

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGM 268
              + PA++     + V  +    +  + C GI R D++        ++  LEIN  PGM
Sbjct: 247 VDEITPARLAEATAERVSAMTKSIYGLLNCYGIIRIDYILSGKKGQEEINLLEINTTPGM 306

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           T  S  P+    AG    E+L  ++E
Sbjct: 307 TTTSFIPQQVRAAGLEIAEVLSDIIE 332


>gi|148978385|ref|ZP_01814879.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
 gi|145962411|gb|EDK27690.1| D-alanylalanine synthetase [Vibrionales bacterium SWAT-3]
          Length = 331

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 133/326 (40%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVSL S       L+    F V ++++ +S G  L               
Sbjct: 8   LLCGGGSSEHEVSLVSANYLFDQLKSVEDFNVVRVEI-KSEGWCLDSGELVYLDINNQTL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    +
Sbjct: 67  RGDDLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126

Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P +                        +K  + GSS+G   +   + +   + +
Sbjct: 127 LGIPNTPYLFLSDNTDEAHAQATQAFEKWGKVFVKAARQGSSVGCYQVNHIEDLSDAINK 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210
           +    + DQ+L+E+ V   EL                     P   FYSYE KY   S +
Sbjct: 187 AF--TYSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSADSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V  + +  +  + +   A      +  R +SR DF       +++  E+N  PGMTP
Sbjct: 245 ITEVEASNLTDEQRQLIAESARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F + L   V  +
Sbjct: 304 ISMFPKMVEHDGHKFAQFLENCVRTS 329


>gi|88854490|ref|ZP_01129157.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
 gi|88816298|gb|EAR26153.1| D-alanine--D-alanine ligase [marine actinobacterium PHSC20C1]
          Length = 316

 Score =  142 bits (357), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 97/307 (31%), Positives = 149/307 (48%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GGIS ER+VSL SG+  A  L   G  V   D D ++   L   KPD+ +  LHG  
Sbjct: 10  VLAGGISHERDVSLRSGRRVADGLLAQGKDVELRDPDATLLPYLRDSKPDVVWPALHGAS 69

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +L+L+ IPY  S   A+ L+ DK  +K +VS  GV    SI ++R +     
Sbjct: 70  GEDGALRGLLDLIGIPYVGSRADAARLAWDKPTAKSLVSRVGVRTPLSIALSRDSFRELG 129

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +S   V+KP +GGS+ G+ ++     +P  +   +++N+ D  LIEQ +
Sbjct: 130 AHSILDELADELSGDLVVKPAQGGSAQGVSIVTDRSDLPSAM--VNAYNYCDVALIEQRI 187

Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+          A         P    Y++E +Y++  +    PA+I          
Sbjct: 188 TGVEIAIGVLDSGMGAVALPAVEIDPVGGAYTFEARYNAGQTRFYTPARISGADADRAAE 247

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH A+G R +SR D + D      ++LE NV PG+T  SIFP+    AG+    + 
Sbjct: 248 AALAAHSALGLRHLSRVDMIVDGA-GTPWFLEANVLPGLTETSIFPQALVAAGHDLGRVY 306

Query: 290 LWMVEDA 296
             + + A
Sbjct: 307 AALADAA 313


>gi|149917372|ref|ZP_01905870.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
 gi|149821709|gb|EDM81105.1| D-alanine--D-alanine ligase A [Plesiocystis pacifica SIR-1]
          Length = 360

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 94/341 (27%), Positives = 159/341 (46%), Gaps = 49/341 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------V 42
           A++ GG SSE +VS+ S     +A++ + F+   + V R                    +
Sbjct: 7   ALVYGGRSSEHDVSIRSATEVLAAVDRSRFEPVAVAVTREGAFKTGPIDASLPGPTEAPL 66

Query: 43  GLVLAHLKP--DL---------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             VL   +P  DL          F +LHG +GEDG +Q + E+ ++PY  SG+LAS+L M
Sbjct: 67  RAVLESGEPIADLGAFLRSCACTFPLLHGPYGEDGTIQGLFEVFDVPYVGSGVLASSLCM 126

Query: 92  DKMRSKQVVSSCGVPVCPS------------ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           DK+  K+ V++    +  +              V      +      P  +KP   GSS+
Sbjct: 127 DKVAFKRYVAAAPNDIPVTPGISVDLVLEGRERVFERAHAAAEAHGFPLFVKPANQGSSV 186

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----- 194
           G+       S+   L  +    +  Q++IE+ +D  E+   V GD   D           
Sbjct: 187 GVSRADDLASLDAALDLAL--RYDAQVVIEKGLDAREIELAVFGDGGPDTVVSPPGEIIL 244

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           PK ++Y+YE KY    +++ +P ++P      +Q LA  A +A  C G++R DFL +  S
Sbjct: 245 PKGEWYTYETKYVDDVASYAIPVELPAATTARLQELALRAFRATRCSGLARVDFLVERDS 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            + +  E+N  PG T +S++P++   AG S+ EL+  +V+ 
Sbjct: 305 LEPWLNEVNTLPGFTSISMYPKLMGVAGVSYTELISKLVDL 345


>gi|288919619|ref|ZP_06413948.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
 gi|288349017|gb|EFC83265.1| D-alanine/D-alanine ligase [Frankia sp. EUN1f]
          Length = 369

 Score =  142 bits (357), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 89/313 (28%), Positives = 138/313 (44%), Gaps = 22/313 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + V+ GG S E EVSL+S  A   AL  AG  V+ + +DR         +          
Sbjct: 23  VVVIGGGTSCEHEVSLASAAAVTEALTAAGHAVAALTIDRDGQWRDHAGRLVGLAGAVEV 82

Query: 51  ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 A  +LHG  GEDG + A+ EL  +PY  S + A AL+MDK  +K V  + GV  
Sbjct: 83  LRSCVAAVPMLHGPGGEDGTLAALCELAGVPYVGSPVRAGALAMDKWATKLVAEAVGVRT 142

Query: 108 CPSILVNRFTMDS-QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            P ILVNR    +   +   P V+KP+  GSS G+ ++     +   +  + +    D++
Sbjct: 143 APGILVNRARTAAGAVMAPLPAVVKPVSAGSSYGVSLVHDTAQLTAAVEAALTL--DDRV 200

Query: 167 LIEQYVDGIELTC----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           L+E+ V G E+         G  ++      V     +         ++  ++PA +   
Sbjct: 201 LVEEVVHGREIDLAVLGRPDGTRTVAPPLEIVTGHAGFFDLAAKYDGSARFLVPAPLSDA 260

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               ++  A   + A+GC G++R DF            E+N  PG T  S  P M A AG
Sbjct: 261 QLGVLREAAVTVYDALGCAGVARVDFFLTDAG--PVLNEVNTMPGFTSHSQVPRMFAAAG 318

Query: 283 YSFRELLLWMVED 295
             + ELL  ++ D
Sbjct: 319 VPYPELLELLIAD 331


>gi|291530203|emb|CBK95788.1| D-alanine--D-alanine ligase [Eubacterium siraeum 70/3]
          Length = 397

 Score =  142 bits (357), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 77/363 (21%), Positives = 141/363 (38%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-----------------VG 43
           + V  GG S E EVS+ S     +++    ++V+ + + ++                 + 
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVTPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 44  LVLAHLK----------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
            +L   +                             D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESRRVILVNDGGKVQLVLYPGKKFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KP+  GSS+GI++   D+ +   L  + ++     L+     +  E+ C V GD +
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233
                      +            +                +PA I     ++++ LA  
Sbjct: 244 TAHASECEEPVNTDEILSYEDKYIAGDKGGKSSGMATLKRKIPADISDKTREQIRTLAVK 303

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M+
Sbjct: 304 AFRSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359

Query: 294 EDA 296
             A
Sbjct: 360 SLA 362


>gi|294056599|ref|YP_003550257.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
 gi|293615932|gb|ADE56087.1| D-alanine/D-alanine ligase [Coraliomargarita akajimensis DSM 45221]
          Length = 305

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 96/304 (31%), Positives = 152/304 (50%), Gaps = 13/304 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+ +EREVSL+SG A A+AL +A F V ++ +D +           + F  LHG
Sbjct: 6   VIVMYGGVGTEREVSLNSGDAIAAAL-EANFPVERLRLDSAELPGTIDAATSIVFPALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
           +FGEDG +QA+++   I Y  SG  AS L MDK R+K++     + V  ++  +   +  
Sbjct: 65  SFGEDGQLQALMDAAGIEYCGSGAAASRLCMDKSRTKELARELNIRVPEAVTFSGTAVPL 124

Query: 121 QHLISPPY----VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
              +        VIKP   GSS+G+   +    + + L Q          L EQ + G E
Sbjct: 125 ADALIDQLGSSLVIKPTDQGSSVGLFFTEHRSELGVTLSQIHQ----GNWLAEQRIRGRE 180

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           LT GV+   ++      +  S  Y Y  KY+  ++ +  PA++   +  ++Q+ A   + 
Sbjct: 181 LTVGVLHGKAM-GVVEIISSSGVYDYAAKYTPGSTEYRFPAELEASVTAQIQQQAEQIYA 239

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           A  CR  +R DFL D      ++LE+N  PG+T  S+ P+ AA  GY F  L   +V  A
Sbjct: 240 ACDCRDFARIDFLLD--GNAPYFLEVNTLPGLTATSLLPKSAACVGYDFESLARQLV-SA 296

Query: 297 SCLR 300
           +  R
Sbjct: 297 AIER 300


>gi|150024748|ref|YP_001295574.1| D-alanyl-alanine synthetase A [Flavobacterium psychrophilum
           JIP02/86]
 gi|189083042|sp|A6GXD5|DDL_FLAPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149771289|emb|CAL42758.1| D-alanine--D-alanine ligase [Flavobacterium psychrophilum JIP02/86]
          Length = 328

 Score =  141 bits (356), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 147/325 (45%), Gaps = 29/325 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV-------------------DRS 41
           +AV+MGG S E  +SL SG+   + L+ + + + ++ +                   D S
Sbjct: 3   VAVVMGGYSDESVISLRSGQLILNNLDKSKYNIFEVHILLKDWSVVIEGEKYPINKADFS 62

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D+A N +HG  GEDG +Q+  EL++IPYT      SAL+ +K  +  V++
Sbjct: 63  FTKNGVITKFDVAINTVHGTPGEDGHLQSYWELIDIPYTGCNFYQSALTFNKRDTLSVLT 122

Query: 102 SCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +P   SI           + +  +  P+ +KP + GSSLG+  +     +   L   
Sbjct: 123 KFNIPKAKSIYLRKGDVIDGNEIKKALGLPFFVKPNQSGSSLGVSKVDALDQLEKAL--E 180

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVL 215
            ++   +++LIE Y++G E++ GV+                   +    +     S  + 
Sbjct: 181 FAFAEDNEILIESYLNGTEVSVGVLNYKGQTKVLGITEILSQNDFFDYEAKYLGKSEEIT 240

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+I  +    V   A   + ++G  G SR+DF+   ++    ++EIN  PG++P SIFP
Sbjct: 241 PARISKEEEILVAESAKKIYNSLGMSGFSRTDFII--MNGIPHFIEINTNPGLSPQSIFP 298

Query: 276 EMAAYAGYSFRELLLWMVEDASCLR 300
           + A +A     ++L   +  A   +
Sbjct: 299 QQAMFAKMDMPQMLDNEITLALSRK 323


>gi|89891675|ref|ZP_01203178.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
 gi|89516010|gb|EAS18674.1| D-alanine, D-alanine ligase [Flavobacteria bacterium BBFL7]
          Length = 326

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 85/321 (26%), Positives = 145/321 (45%), Gaps = 30/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VLMGG SSE ++SL SG   A  L+   F V  I +                    D 
Sbjct: 4   IGVLMGGYSSEWQISLKSGAVIAKHLDKNLFNVFPIAILEDGWYYSDDANNRHVVDKNDF 63

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+ +   H+  D  +N +HG  GEDG +QA LELL IP T      SA++ +K     V+
Sbjct: 64  SITVNDKHITFDCLYNTIHGTPGEDGKIQAYLELLNIPQTSCDSYQSAITFNKRDCIAVL 123

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              G+     I +N+    +   IS     PY +K  + GSS G+  + K + +   L  
Sbjct: 124 KPWGIYTGKHIYLNKGADYNATDISKRLGLPYFVKANRSGSSFGVSKVYKTEELEKALEL 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK--YSSLNSTHV 214
           + S    D++++E ++DG E++ G+       +            +          S  +
Sbjct: 184 AFSV--DDEVILESFLDGTEVSVGIYQLGEEIIALPPTEIVSDNDFFDYEAKYQGKSQEI 241

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I +++   VQ  +   +  + C+GI+R+DF+F        ++EIN  PGM+  SI 
Sbjct: 242 TPARISVELTLAVQEQSKRIYSVLKCKGIARADFIF--HDGTPHFIEINTNPGMSTESII 299

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+       + +++   ++E+
Sbjct: 300 PQQIRATDKTLQQVFTEVIEN 320


>gi|291557013|emb|CBL34130.1| D-alanine--D-alanine ligase [Eubacterium siraeum V10Sc8a]
          Length = 397

 Score =  141 bits (356), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 139/363 (38%), Gaps = 72/363 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           + V  GG S E EVS+ S     +++    ++V  + + ++  + +              
Sbjct: 5   VGVFFGGKSVEHEVSIISALQACNSINKDKYEVIPVYITKNNEMYVGEKIGNIASYRNLK 64

Query: 50  ----------------------------------KPDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+AF ++HG   EDG+ Q  L+ +
Sbjct: 65  SLLKESHRVILVNDGGKVQLVLYPGKRFGNNVYATIDVAFPIVHGTNVEDGVFQGYLQTI 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISP 126
            +PY    +++SA+ MDK   K V    G+PV    +++             D +  I+ 
Sbjct: 125 GVPYVGCDVISSAVGMDKYVMKTVFKDNGIPVLDGTVIHISDYAKDADAVKADIKAKIAY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KP+  GSS+GI++   D+ +   L  + ++     L+     +  E+ C V GD +
Sbjct: 185 PLIVKPINLGSSVGIMIAHNDEQLDEALDNAFTYA-SKLLVEPAITNLKEINCSVCGDYA 243

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNS-------------THVLPAKIPLDIYKEVQRLAFL 233
                      +            +                +PA I  +  ++++ LA  
Sbjct: 244 TAHASECEEPVNTDEILSYKDKYIAGDKGGKSSGMATLKRKIPADISDETREQIRTLAVK 303

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +++G  G SR DF+ D  +  V+  EIN  PG    S+   +    G  + ELL  M+
Sbjct: 304 AFKSLGASGTSRIDFMIDMDNGNVYLNEINTIPG----SLAFYLWEPVGVKYSELLDEMI 359

Query: 294 EDA 296
             A
Sbjct: 360 SLA 362


>gi|260777626|ref|ZP_05886519.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
 gi|260605639|gb|EEX31924.1| D-alanine--D-alanine ligase [Vibrio coralliilyticus ATCC BAA-450]
          Length = 329

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 88/324 (27%), Positives = 136/324 (41%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E EVSL S     S LE    F+V ++++          L            
Sbjct: 8   LLCGGGSAEHEVSLVSADFVQSQLELTPDFEVIRVEMKPEGWYQGEQLVYLDTNAGTLNS 67

Query: 50  -----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    +  
Sbjct: 68  EVNATKLDFVVPCIHGFPGETGDIQSMLELTGIPYLGCGPEASTNSFNKITSKLWYDALS 127

Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P I              +         +K  + GSS+G   + +   +   +  + 
Sbjct: 128 IPNTPYIFLSENNKQAYDQSLAAFEQWGSVFVKAARQGSSVGCYKVTEKDQLQKAINDAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKY--SSLNST 212
              + DQ+L+E+ V   EL                     P+  FYSYE KY   S ++T
Sbjct: 188 --GYSDQVLVEKAVKPRELEVAAYEYKGQLHVTPPGEIKAPEDTFYSYEEKYSADSHSTT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V  + +  D    +Q+ +    + +  R +SR DF   P    V+  E+N  PGMTP+S
Sbjct: 246 DVEASNLTDDQRLIIQQASEKVFKQMRLRHLSRIDFFLTPEGN-VYLNEVNTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           +FP+M  ++G  F E L   V+ +
Sbjct: 305 MFPKMVEHSGLKFSEFLADCVKSS 328


>gi|255507376|ref|ZP_05383015.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           D(s)2923]
 gi|289525806|emb|CBJ15287.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           Sweden2]
 gi|296435384|gb|ADH17562.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/150]
 gi|296439101|gb|ADH21254.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis E/11023]
          Length = 803

 Score =  141 bits (355), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQAKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  ++
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLI 777


>gi|297243295|ref|ZP_06927229.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
 gi|296888702|gb|EFH27440.1| D-alanine-D-alanine ligase (ATP-grasp enzyme) [Gardnerella
           vaginalis AMD]
          Length = 380

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 82/372 (22%), Positives = 142/372 (38%), Gaps = 79/372 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +  L GG + E  +S  S     SA+++  F + +I + +    ++    P         
Sbjct: 6   VVFLYGGKADEHSISCISAAGVLSAVDENRFDIVRIAITKQGEWIVGGEDPRNFRMEEGE 65

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG  GEDG +Q +L
Sbjct: 66  LPVITKTAGTRDVVLDPAKGADGFLVRKADDTLESLGHIDAVFPVLHGPNGEDGTLQGLL 125

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS------------------ILVN 114
           E++++PY   G+LASA  MDK  +KQ+  + G+ V P                       
Sbjct: 126 EMMQVPYVGCGVLASAACMDKYYAKQLFKAAGIDVAPGIALDARKFASDSTNRFAAYANE 185

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP + GSS G+  ++   +  L      +  H  ++L+EQ ++ 
Sbjct: 186 MLAQVEAAKLEYPLFVKPSRAGSSFGVTKVESHDAKALAQAVFEASKHDWRVLVEQGINA 245

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLD 222
            E+ C V+     +  ++++P                               +PA +P +
Sbjct: 246 REIECAVLAARDGEEPKVSLPGEIVLDKRQAGEDQFYDFDSKYMDSAASHVEVPADLPAE 305

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             + V++ A  A +A   RG+SR D    P    V   EIN  PG TP+S++P+     G
Sbjct: 306 TLELVRKTALAAFKAADGRGLSRVDSFVTPE-GHVMINEINTMPGFTPISMYPKAWEATG 364

Query: 283 YSFRELLLWMVE 294
            S+ +L+  ++E
Sbjct: 365 ISYGDLITKLIE 376


>gi|34540521|ref|NP_905000.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis W83]
 gi|39930822|sp|Q7MWA2|DDL_PORGI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34396834|gb|AAQ65899.1| D-alanine--D-alanine ligase [Porphyromonas gingivalis W83]
          Length = 330

 Score =  141 bits (354), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASAL------------EDAGFKV-------SQID-VDR 40
           +AV+ GG S E  VSL S     S L            E   + V         +D  D 
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSTFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S  L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDGERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S  G+ +  S+            D    +  P  +KP  GGSS+    + +   +   + 
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLIARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIE 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTH 213
           Q+   + G++++IE+ + G E+TCG        V            +       +     
Sbjct: 186 QAF--SEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKYNGAVEE 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  + +Q +    ++ +  RGI R D++          LE+N  PGMTP S 
Sbjct: 244 ITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPTSF 302

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG   +E+L  ++ D
Sbjct: 303 IPQQVRAAGMDMKEVLCTIIRD 324


>gi|325479720|gb|EGC82810.1| D-ala D-ala ligase N-terminal domain protein [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 345

 Score =  141 bits (354), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 80/336 (23%), Positives = 137/336 (40%), Gaps = 46/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------VGLVLAHLKPDLA-- 54
           +L GG SSE +++L S    ++ L +  + +  + +D+          +  + + DL   
Sbjct: 6   ILCGGPSSEHDIALRSALNISNNLNENKYNIKLVYIDKKGAFSEPFEKIETNDEFDLVRD 65

Query: 55  --------------------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                       V+HG +GEDG +QA L++  I Y  +G+L+SA
Sbjct: 66  IKESKTKSISNFLDIISKEDLTNTIILPVVHGTYGEDGTIQAFLDVAGISYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ S  +     +     +  N       F       I  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKNKLRQAKYLYTNKEGLDDNFLDKCIEEIGLPLIVKPSANGSSVGVN 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200
            +   + +        +  +  ++L+E+ ++G E         +  +      +    F 
Sbjct: 186 KVTTRKELLD--SGLEALKYDKKVLVEELIEGQEIEFAVVGDMNPDVSKPAAYISDHTFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY S ++   LP K+  D  KE Q      + A GC G +R D  +       +  
Sbjct: 244 DYDAKYFSKSTKESLPYKLDEDKLKEAQEFVKKCYVACGCEGFARVDIFY-ANDGNFYVN 302

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +       SF ELL  ++ED
Sbjct: 303 EINTFPGFTPSSFFARLCELMYDKSFSELLDILIED 338


>gi|226324322|ref|ZP_03799840.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
 gi|225206770|gb|EEG89124.1| hypothetical protein COPCOM_02103 [Coprococcus comes ATCC 27758]
          Length = 320

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 78/317 (24%), Positives = 140/317 (44%), Gaps = 43/317 (13%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------------------DLAFNV 57
              L+   ++++ + + +     +   +                          D+AF V
Sbjct: 1   MKHLDKDKYEITLVGIAKDGKWYILKQEDNDLSKDTWLDGAEVVEGVFNLLRSQDVAFPV 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG +GEDG +Q + EL ++PY    + AS+  MDK+ +K+V  S G+P   S+ V +  
Sbjct: 61  LHGLYGEDGTIQGLFELAQLPYVGCRVFASSACMDKIFAKKVFESAGIPQVKSVYVKKRN 120

Query: 118 M------------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                                   +  P  IK  + GSS+G     K++ +   L +++ 
Sbjct: 121 DGKLVVVEKNMEETKEVEASIMKELGMPCFIKASRSGSSVGCYRCDKEEDLMAKLEEAAK 180

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           ++    +        +E       D  +      +P  +FY++E KY    S   +PAK+
Sbjct: 181 YDTHIVVEECVDCIELETAVLGNDDIIVSRVGQIMPHGEFYTFESKYEDAESKTCIPAKV 240

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +I +++++ A  A +AI   G+SR DF  D  +  V+  EIN  PG T +S++P++  
Sbjct: 241 DEEIQEQIRKYAVRAFKAIDGHGLSRVDFFLDKKTNHVYLNEINTLPGFTSISMYPQLME 300

Query: 280 YAGYSFRELLLWMVEDA 296
             GYS+ ELL  ++E A
Sbjct: 301 DYGYSYSELLDKLIEIA 317


>gi|283768801|ref|ZP_06341712.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
 gi|283104587|gb|EFC05960.1| D-ala D-ala ligase N-terminal domain protein [Bulleidia extructa
           W1219]
          Length = 394

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 71/362 (19%), Positives = 133/362 (36%), Gaps = 70/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------V 42
           + V  GG S E EVS+ S +    AL+   ++V  + V +                   +
Sbjct: 5   VGVFFGGESVEHEVSIISAQQAIHALDKDKYEVIPLYVAKDRKIYYNPEKFFSVENFTNL 64

Query: 43  GLVLAH--------------LKP--------------DLAFNVLHGNFGEDGLVQAILEL 74
             +L                ++P              DLA  V+HG  GEDG +Q + E+
Sbjct: 65  PALLKESIQVTLVNLGNECAIRPVHIGLFQKKTLGTIDLAIPVMHGTNGEDGTIQGLFEM 124

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--------ISP 126
           L+IP+    I  + +  DK+  K ++    +P+ P   V    +++           +  
Sbjct: 125 LKIPFAGCDIYGAVIGQDKVFQKHILHDNHLPITPWFWVYGQDIETYQTQILEKVNSLGY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW------------NHGDQLLIEQYVDG 174
           P ++KP + GSS+GI +   ++        +  +                   +     G
Sbjct: 185 PVILKPARTGSSIGISIAHDNEEYLDCFKDAMRYDEKIITEKVIKPMREINCSVIGDHTG 244

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
              +                 K      + K     ++  +PA +  +  K +Q+LA   
Sbjct: 245 SRASVLEEVTQQEKELLDFDKKYGSGGSKGKSGMAATSRQVPAPLSHEETKYIQQLAKDT 304

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +G  G+ R DF+ D  ++K++  EIN  PG    S+   +    G  F +L+  ++ 
Sbjct: 305 FRVLGSAGVCRIDFIMDAETKKIYINEINTIPG----SLAFYLWKEEGVDFSKLMNQLIT 360

Query: 295 DA 296
            A
Sbjct: 361 LA 362


>gi|146319006|ref|YP_001198718.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
 gi|145689812|gb|ABP90318.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 05ZYH33]
          Length = 424

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 88/332 (26%), Positives = 148/332 (44%), Gaps = 41/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 86  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       ++    + +  ++ P  +KP   GSS+GI   + 
Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G     D    +    V    FY Y  
Sbjct: 206 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTKLPGEVVKNVAFYDYHA 263

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY        +PAKI   I   ++  A  A +AIG  G+S  DF     + ++F  E+N 
Sbjct: 264 KYIDNKIPMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSPCDFFLTE-NGEIFLNELNT 322

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T   ++P +    G  + EL+  +V  A
Sbjct: 323 MPGFTQWFMYPLLWDNMGLGYPELIEKLVCLA 354


>gi|116328043|ref|YP_797763.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331504|ref|YP_801222.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|122280751|sp|Q04RK6|DDL_LEPBJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|122284165|sp|Q052B5|DDL_LEPBL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116120787|gb|ABJ78830.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125193|gb|ABJ76464.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 351

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 96/344 (27%), Positives = 147/344 (42%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV  GG S+E  +S+ +G      L   G  V  I + +  G V               
Sbjct: 4   IAVFFGGSSTEHSISIRTGCFICRTLHTMGHSVKPILLTQDGGWVVPLQYRISIPYEAVN 63

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                               +++L  D+ F  LHG  GEDG +Q  L +L +PYT SG+ 
Sbjct: 64  SSDLFEEEFQKTNGVSKMDFISNLDADIVFLGLHGGKGEDGSIQGFLRVLGVPYTGSGVA 123

Query: 86  ASALSMDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           ASAL+MDK R+ Q+             V           T+     +  P  +KP++GGS
Sbjct: 124 ASALAMDKTRANQIFLQSGQKVAPFFEVEKLGYTNSPEETVIKLMSLGFPQFLKPVEGGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-------VT 190
           S+    I   + +   L          +++ + ++ G E++CGV+               
Sbjct: 184 SVSTYKITNQEQLSRQLALIF--ESDSKVMSQSFLAGTEVSCGVLERYRNGKLERIALPA 241

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              VP  +F+ +E KY    S  + PA+I       VQ LA  AH ++GCRG SRSDF+ 
Sbjct: 242 TEIVPGGEFFDFESKYKQGGSREITPARISKQEMTRVQELAIDAHTSLGCRGYSRSDFII 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             +  +   LE N  PGMT  S+ P+ A  AG +  E+   ++E
Sbjct: 302 --VGGEPHILETNTLPGMTETSLIPQQAKAAGITMEEVFADLIE 343


>gi|160947009|ref|ZP_02094212.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
 gi|158447393|gb|EDP24388.1| hypothetical protein PEPMIC_00971 [Parvimonas micra ATCC 33270]
          Length = 357

 Score =  140 bits (353), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 87/343 (25%), Positives = 152/343 (44%), Gaps = 47/343 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAHLKP--- 51
           +L GG S+E E+S+ + K+  + L+   +K+  I VD+             + + K    
Sbjct: 6   LLYGGKSTEHEISVLTAKSVINNLDRKKYKIFPIYVDKCGRWNYLGKNTKNIENEKELVV 65

Query: 52  ----------------DLA------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                           D        F  +HG F EDG +Q   +++++ Y  + +L+SA+
Sbjct: 66  EGFGNVADSISNFFAKDFVNENAIFFPAMHGTFSEDGTIQGFFDIMDLTYVGNNVLSSAV 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLG 140
            MDK  +  V +  G+      LV ++  +             I     IKP   GSS+G
Sbjct: 126 CMDKGTANDVFAGNGILQPEYYLVTKYEFNKNKDLQIKNILEKIGEVSFIKPCNAGSSVG 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI--AVPKSD 198
           +  + K + I   L+++    + +++L+E+ V G EL   VMG+  L  +         +
Sbjct: 186 VTKVTKKEEIEPALIEAF--KYDNRVLVEEAVIGDELQVLVMGNNILKASLPGGVKVTRE 243

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ YE KY    + H++P  +  +  KE+Q +A  A+    C+G +R D       RK+ 
Sbjct: 244 FFDYEAKYFDETTDHIIPWDLTDEEIKEIQSVAKRAYAVTNCKGFARVDIFVRDSDRKML 303

Query: 259 WLEINVQPGMTPVSIFPEM-AAYAGYSFRELLLWMVEDASCLR 300
             EIN  PGMT VS+ P M       ++ + L  ++E A   +
Sbjct: 304 VNEINTIPGMTAVSMAPAMYMKTFKKTYSDFLDELIELAVENK 346


>gi|86147981|ref|ZP_01066284.1| D-alanylalanine synthetase [Vibrio sp. MED222]
 gi|85834205|gb|EAQ52360.1| D-alanylalanine synthetase [Vibrio sp. MED222]
          Length = 331

 Score =  140 bits (352), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 83/326 (25%), Positives = 132/326 (40%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVS+ S       L   A F V ++++ ++ G  L               
Sbjct: 8   LLCGGGSSEHEVSIVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINDQTL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    +
Sbjct: 67  RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126

Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P +                        +K  + GSS+G   + + + +   + +
Sbjct: 127 LGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQAEELSEAINK 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210
           +      DQ+LIE+ V   EL                     P   FYSYE KY   S +
Sbjct: 187 AF--TFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V    +  +  + +   A      +  R +SR DF       +++  E+N  PGMTP
Sbjct: 245 ITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F + L   V  +
Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|158318443|ref|YP_001510951.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
 gi|158113848|gb|ABW16045.1| D-alanine--D-alanine ligase [Frankia sp. EAN1pec]
          Length = 321

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 92/311 (29%), Positives = 140/311 (45%), Gaps = 17/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLHSGGKLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +L+L  +PY  +   A  ++ DK  +K  V + GV    ++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGALPPACRVAFDKATAKAAVGAAGVATPEAVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  +     +   L+      + D  LIEQ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVTHVDDAGGLAEALMSCF--GYHDSALIEQAV 186

Query: 173 DGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+                    P++  Y Y  +Y++  ++   PA++  D+      
Sbjct: 187 AGVEIAIGVVDSGDGPVALPAVEIEPRAGVYDYAARYTAGATSFFTPARLHKDVLWAAAE 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+ +G R +SR+D + D       +LE+NV PGMT  S +P     AG  F  + 
Sbjct: 247 TALTAHRVLGLRDLSRTDMIVD-RDGVAQFLEVNVAPGMTDTSTWPMGLHAAGLDFAVVC 305

Query: 290 LWMVEDASCLR 300
             +   A C R
Sbjct: 306 RDLAAHA-CDR 315


>gi|255349159|ref|ZP_05381166.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70]
 gi|255503696|ref|ZP_05382086.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 70s]
          Length = 803

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  ++
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLI 777


>gi|229085875|ref|ZP_04218100.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228697399|gb|EEL50159.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 286

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 80/287 (27%), Positives = 142/287 (49%), Gaps = 9/287 (3%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +G+   + L+   +++  I +     LV      D+A   LHG +GEDG +Q  LE L 
Sbjct: 1   MTGEEMIAHLDKNKYEIVPITLHDKKELVEKGSNLDIALLALHGEYGEDGTIQGTLETLG 60

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPL 133
           +PYT SG+L+S + MDK  SK+++   G+     I         +D    +  P V+KP 
Sbjct: 61  VPYTGSGMLSSGICMDKNLSKKMIRYDGIETPDWIHLSNREELQLDEIDKMGYPLVVKPN 120

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G+ ++   +++   L     W    +++IE+Y+ G E+TC ++    L      
Sbjct: 121 SGGSSVGVKIVYDKETLLASLEDVFKW--DAEIVIEKYIKGEEITCSILDGKLL-PIISI 177

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
              ++F+ Y  KY  + +   +  ++PL  Y+ V   A   ++ + C   +R D +    
Sbjct: 178 QHTAEFFDYHAKYDDVATIEEV-VELPLATYERVAEAAMACYKTLKCSVYARVDMMI--K 234

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               + +E+N  PGMT  S+ P+ A  AG S+ +LL  ++E +  +R
Sbjct: 235 DGIPYVMEVNTLPGMTKNSLLPKSAHAAGISYNKLLDTIIETSLQVR 281


>gi|301167108|emb|CBW26687.1| D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 329

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 131/327 (40%), Gaps = 35/327 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48
           +L GG  SE EVSL S       LE    + V ++++  +   V  H             
Sbjct: 6   LLCGGGGSEHEVSLRSANYIYDELEKVNLYNVFKVEIKANGDRVDHHGQLCELRKAGELY 65

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D A   +HG  GE+G++Q+I EL+ +PY       S    +K+ +K  + 
Sbjct: 66  YPSSDQTHKLDFAIPCIHGPPGENGVIQSIFELMGLPYLGCSPEPSQTCFNKVSTKLWLD 125

Query: 102 SCGVPVCPSILVNRFTMDSQ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  VP  P I ++  + +S          +    IK    GSS+G   +   + +   +L
Sbjct: 126 ALKVPNTPYIYLSDESRESISAAEEFFNANKDVYIKAASQGSSVGCYHVTSLEDLESTIL 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +      + +LIE+ +   EL        +  V            +       ++    
Sbjct: 186 SAF--KFSEYVLIERTLKARELEVSAFEYNNEVVITAPGEIICPDGFYDYDQKYSNDSAT 243

Query: 216 PAKIPL-----DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
             ++       +   +++  +  A + +  R +SR DF       KV+  EIN  PGMT 
Sbjct: 244 KTEVNAKGLSAEQINDIKSYSLKAFKGLKLRHLSRIDFFLTEE-GKVYLNEINTFPGMTS 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +S+FP+M    G  F E L  ++E+++
Sbjct: 303 ISMFPKMMENHGVKFSEYLRKIIEEST 329


>gi|320095097|ref|ZP_08026806.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
 gi|319977964|gb|EFW09598.1| D-alanine-D-alanine ligase [Actinomyces sp. oral taxon 178 str.
           F0338]
          Length = 323

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/306 (28%), Positives = 160/306 (52%), Gaps = 17/306 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           ++ GG++ ER+VS+ SG+  A+ L  AGF V   DV+ ++   +A  +P++ + ++HG+ 
Sbjct: 9   IIAGGLTHERDVSVRSGRRVANILTRAGFVVRITDVNDTLVSTIASFQPNVVWPLVHGSI 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG +Q +LE L IP+  S  + S L+ +K  +K +++S G+P      + +       
Sbjct: 69  GEDGSLQTLLESLGIPFVGSASVQSMLASNKPTAKALLASAGMPTPGWFSLPQALFRQVG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                   +H +S P VIKP  GGS+LG+      + +   +    ++ +G +L++EQ +
Sbjct: 129 ATNVLSAIEHGVSFPVVIKPTDGGSALGLSTAHNAEELRTAM--VDAFAYGQKLMVEQRI 186

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           DG ++   V+                    Y Y+ +Y++  + + +PA++  +   +++ 
Sbjct: 187 DGRDVAVSVVDLGDGPIALPPVEISTDGGRYDYDARYTTDETEYFVPARLESNALADLRA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288
            A  AH A+G R +SR DF+ D      ++++ NV PGMT  S+ P+ A  A  YSF   
Sbjct: 247 AAIEAHTALGLRHLSRIDFVIDE-DGTCWFIDANVAPGMTDTSLLPQAAEAADDYSFAAF 305

Query: 289 LLWMVE 294
              +V+
Sbjct: 306 CKEVVD 311


>gi|302335980|ref|YP_003801187.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
 gi|301319820|gb|ADK68307.1| D-alanine/D-alanine ligase [Olsenella uli DSM 7084]
          Length = 359

 Score =  140 bits (352), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 87/352 (24%), Positives = 149/352 (42%), Gaps = 59/352 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG SSE +VSL S       L      ++ + + R    +L              
Sbjct: 7   VALLFGGTSSEHDVSLRSAANVID-LLSERVDLTLVGITRGGSWLLYGGDATAIADDSWQ 65

Query: 47  -------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                      L  D+ F VLHG  GEDG+ Q +LE   +PY  
Sbjct: 66  GHDTTPVCAVPGDGGGLFAVEGGSPVRLPIDVVFPVLHGQGGEDGVTQGLLESCRLPYVG 125

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----DSQHLISPPYVIKPLKGG 136
            G+L+SAL  DK  + ++V++ G+      +V+         +       P  +KP +GG
Sbjct: 126 CGVLSSALCTDKDAAHRIVAAAGIRSPRCEVVHPGDGATRIAEVAAACGYPLFVKPARGG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI---- 192
           SS G+  ++  + +   L  +    + +++ +E+ + G E+ C +MG A+ ++       
Sbjct: 186 SSYGVSKVEGPEQLDEALGLAF--GYDEKVAVEEAIVGTEVGCAIMGGAAGELAMGLVDE 243

Query: 193 -------AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                         +S     S+ NS+   PA +P ++ + V+       +A+GC G++R
Sbjct: 244 TVVSDGGFFHIHQDHSEGADASTRNSSTRCPALLPPEVMERVRETGTAVWRALGCSGLAR 303

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            D        +V + E+N  PG+T  S FP M A AG    E+L  +V  A+
Sbjct: 304 VDLFVTER-GEVVFNEVNTMPGLTSYSRFPAMMAAAGADMGEVLERLVRSAA 354


>gi|255311596|ref|ZP_05354166.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276]
 gi|255317897|ref|ZP_05359143.1| UDP-N-acetylmuramate-alanine ligase and D-Ala-D-Ala ligase
           [Chlamydia trachomatis 6276s]
 gi|296437240|gb|ADH19410.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11222]
          Length = 803

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  +V
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|15605495|ref|NP_220281.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis D/UW-3/CX]
 gi|6919928|sp|O84767|MUDD_CHLTR RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|3329224|gb|AAC68357.1| UDP-N-acetylmuramate-alanine ligase/D-Ala-D-Ala Ligase [Chlamydia
           trachomatis D/UW-3/CX]
          Length = 803

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  +V
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|84392313|ref|ZP_00991740.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
 gi|84376433|gb|EAP93313.1| D-alanylalanine synthetase [Vibrio splendidus 12B01]
          Length = 331

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 132/326 (40%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVSL S       L   A F V ++++ ++ G  L               
Sbjct: 8   LLCGGGSSEHEVSLVSANYLFEQLNSVADFNVVRVEI-KNEGWCLDSGELVYLDINNQTL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    +
Sbjct: 67  RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126

Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P +                        +K  + GSS+G   + + + +   + +
Sbjct: 127 LGIPNTPYLFLSDNNDQAHSQATQAFENWGKVFVKAARQGSSVGCYQVNQVEDLSEAINK 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210
           +      DQ+L+E+ V   EL                     P   FYSYE KY   S +
Sbjct: 187 AF--TFSDQVLVEKSVVPRELEVAAYEIDGELHISKPGEVIAPNGAFYSYEEKYSSDSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T +    +  +  + +   A      +  R +SR DF       +++  E+N  PGMTP
Sbjct: 245 ITEIEANNLTDEQLELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F + L   V  +
Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|110804402|ref|YP_687922.1| D-alanyl-alanine synthetase A [Shigella flexneri 5 str. 8401]
 gi|110613950|gb|ABF02617.1| D-alanine-D-alanine ligase A [Shigella flexneri 5 str. 8401]
          Length = 346

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 78/334 (23%), Positives = 142/334 (42%), Gaps = 55/334 (16%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGL--------VLAHLKP--------------- 51
           SL S K    A++ + F V  + +D+            +L    P               
Sbjct: 2   SLQSAKNIVDAIDKSRFDVVLLGIDKQGQWHVSDASNYLLNADDPAHIALRPSATSLAQV 61

Query: 52  --------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                               D+ F ++HG  GEDG +Q +L +  +P+  S +LASA  M
Sbjct: 62  PGKHEHQLIDAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANLPFVGSDVLASAACM 121

Query: 92  DKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK  +K+++   G+ + P I        N    + +  +  P  +KP   GSS+G  V K
Sbjct: 122 DKDVTKRLLRDAGLNIAPFITLTRANRHNISFAEVESKLGLPLFVKPANQGSSVG--VSK 179

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                   +    ++    ++++EQ + G E+ C V+G+ +   +           Y   
Sbjct: 180 VTSEEQYAIAVDLAFEFDHKVIVEQGIKGREIECAVLGNDNPQASTCGEIVLTSDFYAYD 239

Query: 206 YSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
              ++      V+PA I  +I  +++ +A  A+Q +GC G++R D    P   +V   EI
Sbjct: 240 TKYIDEDGAKVVVPAAIAPEINDKIRAIAVQAYQTLGCAGMARVDVFLTPE-NEVVINEI 298

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 299 NTLPGFTNISMYPKLWQASGLGYTDLITRLIELA 332


>gi|268609111|ref|ZP_06142838.1| D-alanine--D-alanine ligase [Ruminococcus flavefaciens FD-1]
          Length = 357

 Score =  140 bits (351), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 73/346 (21%), Positives = 141/346 (40%), Gaps = 54/346 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
           AV+ GG S E ++SL+S       + +  ++V  I + R                     
Sbjct: 7   AVIFGGTSREHKLSLASAAEVIRNIPEDKYEVICIGITRKGRWLYFPGDVEDIPTGEWEQ 66

Query: 45  ------------------VLAH------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
                             +L         K D+ F V+ G  G DG +Q +L+L  IPY 
Sbjct: 67  DPDCTSAIISPDPLHRGIILIENGEAVVRKIDVVFPVVMGKHGADGTIQGLLDLSGIPYV 126

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF--------TMDSQHLISPPYVIKP 132
             G+LA+A  MDK     V+    +      ++ +           +    +  P ++KP
Sbjct: 127 GCGVLAAASCMDKSHIHMVMDDYDIATADWRIITQREISEIDKRCHEIAGELGFPLIVKP 186

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            K G+S G         +   +  +   ++ +++++E+YV G ++   V G  +   T I
Sbjct: 187 AKSGTSAGTGKADDLAQLIAAVKVAF--SNDNKVVVEKYVSGRKMEAAVFGYDTPFSTYI 244

Query: 193 AVPKSDFYSYELKYSSLNSTH--VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                    Y+    + ++     +PA I  ++   ++  A  A++A+GC+G++R DF  
Sbjct: 245 GEILDPDRVYDPTEVNQSTGDGLKIPADISDELQASIRETAVKAYKAMGCKGLARLDFFL 304

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++   +I   PG+   S+FP++  + G S  + +  ++E A
Sbjct: 305 T-DDGRLLLNKIGTSPGLRKNSVFPKLMEHMGISHEDFVDMLLEQA 349


>gi|299143291|ref|ZP_07036371.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
 gi|298517776|gb|EFI41515.1| D-alanine--D-alanine ligase [Peptoniphilus sp. oral taxon 386 str.
           F0131]
          Length = 389

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 81/367 (22%), Positives = 136/367 (37%), Gaps = 74/367 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHL------- 49
           +AV+ GG S E EVS+ +G      ++ + +    + + +    +    L +        
Sbjct: 4   IAVVFGGRSVEHEVSIITGMQIMENMDKSKYNPIPLYITKEGKFLTGDCLKNFSTFKKND 63

Query: 50  ----------------------------------------KPDLAFNVLHGNFGEDGLVQ 69
                                                   K D  F  LHG +GEDG  Q
Sbjct: 64  FSEAIEVFFKGYTGDSNMYTIKIQKSGLFSKENFGIEVYAKIDAVFPALHGTYGEDGCFQ 123

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-------QH 122
            +LEL+++PY   G++++A+ MDK+  K+V  S  +P+       R    +         
Sbjct: 124 GLLELIQVPYVGCGVMSAAVGMDKVVMKKVFQSENIPMTEYFYFYRDEWKNRDEIIEKAE 183

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +     +KP   GSS+GI      +     +  +  ++    +              + 
Sbjct: 184 KLGYSLFVKPANLGSSVGISKATNREEFVEAVEIAVHYDRKIIVERAVENPREINAAVMG 243

Query: 183 GDASLDVTEIAVPKSD------FYSYELKYS----SLNSTHVLPAKIPLDIYKEVQRLAF 232
            +  + V+    P            Y           N    LPA IP D+  E+++ A 
Sbjct: 244 YEGDIIVSACEEPIGWKDLLKYEDKYIAGSKGSKGMKNKKKNLPADIPEDVRAEIEKYAH 303

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           LA +AI   G +R DFL D    KV+  EIN  PG    SI   +   +G SF+EL+  +
Sbjct: 304 LAFRAIDGMGDARIDFLLD--GDKVYVNEINTLPG----SIAFYLWEESGISFKELITRL 357

Query: 293 VEDASCL 299
           +E +   
Sbjct: 358 IELSKIR 364


>gi|76789504|ref|YP_328590.1| D-alanine--D-alanine ligase [Chlamydia trachomatis A/HAR-13]
 gi|237803192|ref|YP_002888386.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/Jali20/OT]
 gi|237805113|ref|YP_002889267.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis B/TZ1A828/OT]
 gi|76168034|gb|AAX51042.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           A/HAR-13]
 gi|231273413|emb|CAX10328.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|231274426|emb|CAX11221.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           B/Jali20/OT]
 gi|296436311|gb|ADH18485.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9768]
 gi|296438170|gb|ADH20331.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/11074]
 gi|297140671|gb|ADH97429.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis G/9301]
          Length = 803

 Score =  140 bits (351), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  +V
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|229496826|ref|ZP_04390535.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
 gi|229316237|gb|EEN82161.1| D-ala D-ala ligase [Porphyromonas endodontalis ATCC 35406]
          Length = 330

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 80/322 (24%), Positives = 137/322 (42%), Gaps = 31/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S EREVSL S       ++   F    + + R +  V               
Sbjct: 8   IAIVAGGYSGEREVSLRSAATIIKDIDRTLFSPYLVRLSRDLWEVQVEDTWLPIDRNHFS 67

Query: 46  ----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   + D AF  +HG  GE+GL+Q   ++LEIPY   G+L  +L+ DK      +S
Sbjct: 68  FSMGDKECRFDYAFITIHGTPGENGLLQGYFDMLEIPYNTGGVLCESLTFDKFTCNHYLS 127

Query: 102 SCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + G+ +  S  +              I  P  +KP  GGSS+    +     + + + ++
Sbjct: 128 AFGIRIAASERLFSDIPYQVEEVAKRIPLPVFVKPNAGGSSIATTKVTSMDQLAVAIQKA 187

Query: 158 SSWNHGDQLLIEQYVDGIE----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
                  ++L+E+ ++G E              L +TE+ + K +F+ ++ K    NS  
Sbjct: 188 FEEAP--EVLVERLIEGTEVTSGCYIVNNTPHPLPLTEVVIKKGEFFDFDAK-YHGNSDE 244

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I   + +E+Q L       +  +GI R D++      K   LE+N  PGMT  S 
Sbjct: 245 ITPARISEKLTQELQELTSRIALLLHAQGIIRVDYII-EADGKPTLLEVNTTPGMTEASF 303

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG     +   ++ D
Sbjct: 304 IPQEIRAAGLELSHIFTAIIND 325


>gi|166154104|ref|YP_001654222.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|166154979|ref|YP_001653234.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|301335342|ref|ZP_07223586.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           trachomatis L2tet1]
 gi|165930092|emb|CAP03575.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis 434/Bu]
 gi|165930967|emb|CAP06529.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 803

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 451 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 510

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 511 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 570

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 571 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPMFVKSSHLGSSIGVFEVHNVIELR 630

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 631 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVIAGLHERRGSGGFIDYQEKYGL 690

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 691 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 749

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  +V
Sbjct: 750 PGMTETSPFLTSFIRKGWSYEQIVHQLV 777


>gi|228469448|ref|ZP_04054456.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
 gi|228309023|gb|EEK17666.1| D-ala D-ala ligase [Porphyromonas uenonis 60-3]
          Length = 329

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 126/322 (39%), Gaps = 28/322 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS  S +     ++ + F    + +      V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQSLFTPYLVTITADAWSVTDATGREGTIDRALV 65

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +   +A+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGAEEVTFAVAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  ++              +  +  P  +KP  GGSS+    I++   +   
Sbjct: 126 HHGLRIARSQRLHNQTKELSPEEQQQIESTLRLPLFVKPNTGGSSIATTRIEQWDQLATA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           ++ + +      +        +   C ++ D +  +    V   D +          S  
Sbjct: 186 VVDAYTAAPDVLVEECIVGTEVTCGCVILPDEAFALPVTEVVAHDTFFDYDAKYYGKSDE 245

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ  +      + C G  R DF+          LE+N  PGMT  S 
Sbjct: 246 ITPARISPELTQRVQETSLTIAHLLDCYGFVRIDFII-EADGIPTLLEVNTTPGMTEASF 304

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG    +L+  +++ 
Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326


>gi|297748892|gb|ADI51438.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-EC]
 gi|297749772|gb|ADI52450.1| UDP-N-acetylmuramate--alanine ligase [Chlamydia trachomatis D-LC]
          Length = 833

 Score =  139 bits (350), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 70/328 (21%), Positives = 130/328 (39%), Gaps = 37/328 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL----------------- 44
            ++ GG S E E+S+ S K  A  L  + + VS   + R                     
Sbjct: 481 GIICGGKSCEHEISVLSAKNIAKHLSKSFYDVSYFLITREGLWESVSSLETAEDSGKSVF 540

Query: 45  --VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +A    K D+   +LHG +GEDG +Q  LE +  PYT   I  SA++M+K+ +K+ +
Sbjct: 541 DPEIAQRLEKVDVVLPILHGPYGEDGAMQGFLETIGKPYTGPAIAFSAIAMNKVFTKRFM 600

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 601 SDLGIPVVPYLPLTLAGWKQEQDKWLAHIVEAFSFPIFVKSSHLGSSIGVFEVHNVIELR 660

Query: 152 LDLLQSSSWNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY-- 206
             + ++   ++    ++  +      + +     G   +           F  Y+ KY  
Sbjct: 661 DAINEAFMRDNDVFVEENRLGCKEIEVSVLGDGSGAFVVAGLHERRGSGGFIDYQEKYGL 720

Query: 207 -SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  V    +  +I +++   A   ++ +  +G  R DF  D      +  E+N  
Sbjct: 721 SGKSSAQIVFDTDLSKEIQEQILEAADKIYRLLLGKGSCRIDFFVDEEGN-FWLSEMNPI 779

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PGMT  S F       G+S+ +++  +V
Sbjct: 780 PGMTETSPFLTSFIRKGWSYEQIVHQLV 807


>gi|218676510|ref|YP_002395329.1| D-alanyl-alanine synthetase A [Vibrio splendidus LGP32]
 gi|254767747|sp|B7VRZ7|DDL_VIBSL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|218324778|emb|CAV26458.1| D-alanine--D-alanine ligase [Vibrio splendidus LGP32]
          Length = 331

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 82/326 (25%), Positives = 131/326 (40%), Gaps = 36/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVS+ S       L     F V ++++ ++ G  L               
Sbjct: 8   LLCGGGSSEHEVSIVSANYLFEQLNSVTDFNVVRVEI-KNEGWCLDSGELVYLDINDQTL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                  K D     +HG  GE G +Q++ E+ +IPY   G  AS  S +K+ SK    +
Sbjct: 67  RGDNLESKVDFIVPCIHGFPGETGDIQSLFEMAKIPYLGCGSEASNNSFNKITSKLWYDA 126

Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P +                        +K  + GSS+G   + + + +   + +
Sbjct: 127 LGIPNTPYLFLSDNTEQAHAQATQAFESWGKVFVKAARQGSSVGCYQVNQVEELSEAINK 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLN 210
           +      DQ+LIE+ V   EL                     P   FYSYE KY   S +
Sbjct: 187 AF--TFSDQVLIEKSVVPRELEVAAYEIDGELQISKPGEVIAPNGAFYSYEEKYSADSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V    +  +  + +   A      +  R +SR DF       +++  E+N  PGMTP
Sbjct: 245 ITEVEATNLTDEQRELIADSARKVFTQMKLRHLSRIDFFLT-QDNEIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP+M  + G+ F + L   V  +
Sbjct: 304 ISMFPKMVEHDGHKFSQFLENCVRTS 329


>gi|229822689|ref|YP_002884215.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
 gi|229568602|gb|ACQ82453.1| D-alanine--D-alanine ligase [Beutenbergia cavernae DSM 12333]
          Length = 313

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 94/307 (30%), Positives = 153/307 (49%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S ER+VSL SG+  A AL DAG   +  DVD  +   L   +PD+ + +LHG+ 
Sbjct: 7   VLAGGLSHERDVSLRSGRRVAEALRDAGVSAAVRDVDADLLAYLDDARPDVVWPLLHGST 66

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +LEL+ +    +G   S ++  K  +K V++  GV    S  + +       
Sbjct: 67  GEDGSIRDLLELVGVRAVGTGSAGSRIAWAKPVAKTVLARAGVATPASATLPQSLFRELG 126

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+LG+ ++   +++P  +   S +++GD  LIEQ V
Sbjct: 127 PHAVLGRVLDRLGLPLVVKPASGGSALGVSLVTSAEALPQAM--VSCFSYGDVALIEQAV 184

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G E+   V+              V     Y ++ +Y++  + +  PA++P D       
Sbjct: 185 TGTEVAVSVVDLGDGPVALPPVEIVVDDGPYDFDARYNAGRTEYFTPARLPADHLAAACA 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  AH  +  R +SR+D + D      ++LE+NV PGMT  S+FP  AA +     EL 
Sbjct: 245 VAVRAHDVLRLRHLSRTDLVVDGY-GVAWFLEVNVAPGMTETSLFPLAAAASPTPLPELY 303

Query: 290 LWMVEDA 296
             + + A
Sbjct: 304 RGLADVA 310


>gi|332652706|ref|ZP_08418451.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
 gi|332517852|gb|EGJ47455.1| D-alanine--D-lactate ligase [Ruminococcaceae bacterium D16]
          Length = 347

 Score =  139 bits (350), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 84/336 (25%), Positives = 138/336 (41%), Gaps = 45/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +  GG S+E  VSL S  A  + L+ + F+   + + +S G +                 
Sbjct: 8   IFFGGCSTEYGVSLQSAHAVLTHLDRSRFEPLLVGITQSGGWLYYTGAPDAIPADRWQGT 67

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L  D AF VLHG  GEDG +Q +LEL  IP    G
Sbjct: 68  ECVPCTLVLSRGVSHLLLLDGSGTQLSFDAAFPVLHGKNGEDGTLQGLLELAGIPVIGCG 127

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-----ISPPYVIKPLKGGSS 138
            L+SAL MDK R+ ++ +  GV V  S++  R     +       +  P  +KP++ GSS
Sbjct: 128 ALSSALCMDKDRAHKLAALAGVKVPRSVVFRRSAGMDEIKAAAAKLGYPIFVKPVRAGSS 187

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            GI  +   + +P     + + +    L        +        + ++   +       
Sbjct: 188 FGITRVTGPEGLPGAAAAAFANDRELLLEEAIPGFEVGCAVLGTDELTVGAVDEIELSQG 247

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+ +E KY+   S    PA+I      E+Q +A   ++A+ C+  +R D    P   ++ 
Sbjct: 248 FFDFEEKYTLKTSAIHCPARIHPLKAAEIQAVAKAIYRALDCKDFARVDLFLTPE-GEIV 306

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + E+N  PG T  S +P M   AG  F  L+  ++E
Sbjct: 307 FNEVNTIPGFTAHSRYPNMMKAAGLDFTTLITRIIE 342


>gi|40217779|gb|AAR82837.1| D-alanine,D-alanine ligase [Enterococcus faecium]
          Length = 333

 Score =  139 bits (349), Expect = 6e-31,   Method: Composition-based stats.
 Identities = 87/329 (26%), Positives = 141/329 (42%), Gaps = 47/329 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  I + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLIFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            ++F  E+N  PG T  S++P +    G 
Sbjct: 302 NELFLNELNSMPGFTEFSMYPTLMGKYGL 330


>gi|94971618|ref|YP_593666.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94553668|gb|ABF43592.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 393

 Score =  139 bits (349), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 102/374 (27%), Positives = 151/374 (40%), Gaps = 80/374 (21%)

Query: 1   MAVLMGGISSER-------------------EV------------------SLSSGKACA 23
           + VL GG S E                    EV                  SL +GK   
Sbjct: 7   VGVLFGGRSGEHDVSLLSAASVINAVDKKKFEVVPIGITKEGKWLTASHAESLLNGKKAE 66

Query: 24  SALED------------AGFKVSQIDV-------------DRSVGLVLAHLKPDLAFNVL 58
             L              A  +   +                 + G   + +  D+ F VL
Sbjct: 67  QQLRAGDPEATPGAAVLAKGEAVLVPPVPQSDRSAIVPFETDAAGHSASSIDVDVIFPVL 126

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGEDG +Q + EL  IPY  +G+L SA  MDK   K +  + G+P+   + V R   
Sbjct: 127 HGTFGEDGTIQGLFELANIPYVGAGVLGSAAGMDKDIMKALFKNAGLPIVKHMTVLRSQW 186

Query: 119 DSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             +           +  P  +KP   GSS+GI      + +   L +++      +L+IE
Sbjct: 187 QREPKKVKKLVESKLKYPVFVKPANLGSSVGISKAHDSKELGPALDEAA--KFDRKLVIE 244

Query: 170 QYVDGI-------ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           Q V G        E +     +    V    VP  +FY Y  KY    S   +PAK+P  
Sbjct: 245 QGVGGKKKKAREIECSVLGNDEPKASVPGEIVPIKEFYDYAAKYLDEGSALEIPAKLPKS 304

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             K+VQ LA  A QA+   G+ R DFL DP S K++  EIN  PG T +S++P++   +G
Sbjct: 305 TQKQVQELAIRAFQAVDGSGLGRVDFLIDPKSNKLYVNEINTMPGFTSISMYPKLWEASG 364

Query: 283 YSFRELLLWMVEDA 296
             + +L+  ++E A
Sbjct: 365 LKYTDLITRLIELA 378


>gi|33519925|ref|NP_878757.1| D-alanyl-alanine synthetase A [Candidatus Blochmannia floridanus]
 gi|39930853|sp|Q7VRX1|DDL_BLOFL RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|33504271|emb|CAD83163.1| D-alanine:D-alanine ligase A [Candidatus Blochmannia floridanus]
          Length = 354

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 81/343 (23%), Positives = 142/343 (41%), Gaps = 50/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E EVSL S       +    F+V  + + +     +              
Sbjct: 7   VGLVCGGCSLEHEVSLKSAIYIMKYINKRFFEVVVLWISKQGDWYIVENDDMHIDFFVNK 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L  D+ F ++HG  GEDG +Q +L L+ +PY  S 
Sbjct: 67  ENLHKCMPILMFSSGNRCFEYINNILSLDVIFPIIHGALGEDGSLQGLLRLMNLPYVGSD 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGS 137
           +L SA+ MDK  +K+++   G+ + P              ++       P+ +KP+  GS
Sbjct: 127 VLGSAICMDKDITKRLLRDSGLSITPFRTFLAHEKKKLKFLNFADMFGLPFFVKPVNQGS 186

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVMGDASLDVTEIA 193
           S+G+  +  D S    L  +  ++H  +++IE  + G EL C          +    EI 
Sbjct: 187 SIGVAKVNDDYSFHSALDIAFFYSH--KIIIESCIAGRELECAVLGNNENPITSVCGEII 244

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               DFY+Y  KY   NS  V+PA +   +  +++ +A    Q + C G++R D      
Sbjct: 245 KKNDDFYTYCDKYVDHNSEIVIPAVLEKSVSSKIRSIAIRVFQILNCFGMARVDIFLFGK 304

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             ++   E+N  PG T  S++ ++    G +   LL  ++  A
Sbjct: 305 D-RIIINEVNTLPGFTSDSMYLKLWQATGINISTLLTRLIMLA 346


>gi|225011531|ref|ZP_03701969.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
 gi|225004034|gb|EEG42006.1| D-alanine--D-alanine ligase [Flavobacteria bacterium MS024-2A]
          Length = 328

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 77/318 (24%), Positives = 135/318 (42%), Gaps = 30/318 (9%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
            V+ GG +SE ++SL SGK     L+ + ++V  I ++ +  +                 
Sbjct: 8   GVVCGGFTSEFQISLLSGKTVFDNLDRSLWEVFLITINSNEWVANDDNGNHYSVSKGDFT 67

Query: 52  ----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                     D+ FN +HG  GE+G + A+ ELL IP++      SAL+ +K     V+ 
Sbjct: 68  LQIGNDIVFLDVIFNSIHGAPGENGQLAALWELLNIPFSSCDSYTSALTYNKRDCLSVLR 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +P      ++R        I      P  +K  + GSS G+  +KK  ++   L ++
Sbjct: 128 EINIPTAKHFSIDRNDKIDLEKIEKAVGFPCFVKANRAGSSFGVFKVKKKSNLEQALQKA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHVL 215
                  Q++IE  ++G E++ GV                    +          S  + 
Sbjct: 188 F--QEDSQVIIESALEGREVSVGVAKLRGDIKVLPVTEIITENEFFDYAAKYEGKSQEIT 245

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP++  +EV++ +   +  +G +G+ RS+F+F  +      LEIN  PG T  SI P
Sbjct: 246 PAQIPIEWKEEVEKRSKEIYHKLGLKGVVRSEFIF--VDGVPHLLEINTVPGFTQKSIIP 303

Query: 276 EMAAYAGYSFRELLLWMV 293
           + A   G    E    ++
Sbjct: 304 QQALAMGIELSEFFNLLL 321


>gi|319760597|ref|YP_004124535.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318039311|gb|ADV33861.1| D-alanine--D-alanine ligase family protein [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 376

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 81/337 (24%), Positives = 148/337 (43%), Gaps = 56/337 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + ++ GG S+E EVSL S       ++   F++    + +  G  +              
Sbjct: 10  VGLICGGCSTEHEVSLQSAAYIMQHIDKNLFEIVVFWISKHGGWYIIYNDVSRNIFSDSR 69

Query: 47  ---------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                                      A LK D+ F ++HG+FGEDG +Q ++ ++ +PY
Sbjct: 70  EQKNKYIPVMIKQFSGRFVFFTDDITSALLKIDVIFPIIHGSFGEDGSLQGLIRIMNLPY 129

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPL 133
             S IL S++ MDK  +K+++   G+PV      + +   +   +S       P+ IKP+
Sbjct: 130 VGSSILGSSICMDKTITKRLLRDSGLPVASFKTFSHYERSNITFVSFYNMFGLPFFIKPV 189

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASL 187
             GSS+G+  +         L  +    +GD++++E  + G EL C        +     
Sbjct: 190 NQGSSIGVSKVTNQNVFNKALDVAF--AYGDKIMVEPCIVGRELECAVLGNDDPISSVCG 247

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           ++   +   + FY+Y  KY S  +  ++PA I   I  +V+  +  A Q + C G++R D
Sbjct: 248 EIVINSNNDNGFYTYYKKYISSTTEVIIPALITNIISDKVRHYSICAFQTLSCSGMARID 307

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                L+ ++   E+N  PG T  S++P++    G S
Sbjct: 308 MFLT-LNNQIIINEVNTLPGFTSHSMYPKLWEATGIS 343


>gi|114793805|pdb|2FB9|A Chain A, Crystal Structure Of The Apo Form Of D-Alanine: D-Alanine
           Ligase (Ddl) From Thermus Caldophilus: A Basis For The
           Substrate-Induced Conformational Changes
          Length = 322

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 35/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG+S E EVSL S +     +    F      + +    +L                
Sbjct: 8   LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 64

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+
Sbjct: 65  EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 124

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L  + 
Sbjct: 125 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 183

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              + ++ ++E+ +  +   E+                  ++ FY YE KY+   +  ++
Sbjct: 184 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 241

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ LA  A++ +G RG++R DF       +++  E+N  PG TP S++P
Sbjct: 242 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GELYLNELNTIPGFTPTSMYP 299

Query: 276 EMAAYAGYSFRELLLWMVEDASC 298
            +    G ++ ELL  +VE A  
Sbjct: 300 RLFEAGGVAYPELLRRLVELALT 322


>gi|55981556|ref|YP_144853.1| D-alanyl-alanine synthetase A [Thermus thermophilus HB8]
 gi|81363879|sp|Q5SHZ3|DDL_THET8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160286257|pdb|2YZM|A Chain A, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286258|pdb|2YZM|B Chain B, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286259|pdb|2YZM|C Chain C, Structure Of D-Alanine:d-Alanine Ligase With Substrate
           From Thermus Thermophilus Hb8
 gi|160286261|pdb|2YZN|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286262|pdb|2YZN|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|160286263|pdb|2YZN|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With
           Amppnp From Thermus Thermophilus Hb8.
 gi|189096109|pdb|2ZDG|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096110|pdb|2ZDG|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096111|pdb|2ZDG|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096112|pdb|2ZDG|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           From Thermus Thermophius Hb8
 gi|189096113|pdb|2ZDH|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096114|pdb|2ZDH|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096115|pdb|2ZDH|C Chain C, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096116|pdb|2ZDH|D Chain D, Crystal Structure Of D-Alanine:d-Alanine Ligase With Adp
           And D-Alanine From Thermus Thermophius Hb8
 gi|189096117|pdb|2ZDQ|A Chain A, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|189096118|pdb|2ZDQ|B Chain B, Crystal Structure Of D-Alanine:d-Alanine Ligase With Atp
           And D-Alanine:d-Alanine From Thermus Thermophius Hb8
 gi|55772969|dbj|BAD71410.1| D-alanine--D-alanine ligase [Thermus thermophilus HB8]
 gi|74381947|emb|CAJ29881.1| D-alanine:D-alanine ligase [Thermus caldophilus]
          Length = 319

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 92/323 (28%), Positives = 150/323 (46%), Gaps = 35/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG+S E EVSL S +     +    F      + +    +L                
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 61

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL MDK  SK+
Sbjct: 62  EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCMDKDLSKR 121

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L  + 
Sbjct: 122 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 180

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              + ++ ++E+ +  +   E+                  ++ FY YE KY+   +  ++
Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ LA  A++ +G RG++R DF       +++  E+N  PG TP S++P
Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGMARVDFFLAE--GELYLNELNTIPGFTPTSMYP 296

Query: 276 EMAAYAGYSFRELLLWMVEDASC 298
            +    G ++ ELL  +VE A  
Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319


>gi|28900741|ref|NP_800396.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus RIMD
           2210633]
 gi|153838099|ref|ZP_01990766.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|260365385|ref|ZP_05777927.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
 gi|260877677|ref|ZP_05890032.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|260896057|ref|ZP_05904553.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|260902128|ref|ZP_05910523.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|32699435|sp|Q87HS0|DDL_VIBPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28809187|dbj|BAC62229.1| D-alanine-D-alanine ligase [Vibrio parahaemolyticus RIMD 2210633]
 gi|149748485|gb|EDM59344.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ3810]
 gi|308088124|gb|EFO37819.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus Peru-466]
 gi|308090884|gb|EFO40579.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AN-5034]
 gi|308109929|gb|EFO47469.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus AQ4037]
 gi|308112832|gb|EFO50372.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus K5030]
          Length = 329

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L      KV+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SNESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +             +          +K  + GSS+G   + + Q+I   +  +
Sbjct: 127 DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
               + DQ+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +   +++  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTQEQIDKIRHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|299822342|ref|ZP_07054228.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
 gi|299815871|gb|EFI83109.1| D-alanine--D-alanine ligase [Listeria grayi DSM 20601]
          Length = 371

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 80/350 (22%), Positives = 145/350 (41%), Gaps = 57/350 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           VL GG S+E EVSL +  +   A++   F++  I +      +                 
Sbjct: 7   VLYGGKSAEHEVSLQTAFSVIGAVQLDKFEIQPIYITNEGEWISGPALTEPIRFAEQLRF 66

Query: 46  --------------------------LAHLKPD-LAFNVLHGNFGEDGLVQAILELLEIP 78
                                     L +   D + F +LHG  GEDG +Q  LE+L++P
Sbjct: 67  LDGETTHLSQTEGEPSHGEWINPGEILGYKTEDTVVFPLLHGPNGEDGTIQGFLEVLQLP 126

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYV 129
           Y  +G+L+SA +MDK+  K+V +   +P                +    D + ++  P  
Sbjct: 127 YVGNGVLSSAAAMDKIIMKKVFADAAIPQVPAVSLRLVDWQKHQSEMLSDIEEVLQYPVF 186

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP   GSS+GI      +++   + ++  ++    +        IE+           V
Sbjct: 187 VKPANLGSSVGITKATSKEALAASINEAFQFDRRIVIEQGVVAREIEIAVLGNDTPVCSV 246

Query: 190 TEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +P+     FY Y+ KY+   +   +PAKI   + ++++  A  A+  +   G+ R+
Sbjct: 247 PGEILPEDGLAPFYDYKTKYTDNKTELAIPAKIDPAVLEQMKEYAIQAYLGLDAAGLVRA 306

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF       ++   E+N  PG TP S++P +   +G  +  L+  +VE A
Sbjct: 307 DFFLT-QDNQILLNEVNTMPGFTPYSMYPLLWNESGIPYAALIERLVELA 355


>gi|227500315|ref|ZP_03930382.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
 gi|227217601|gb|EEI82913.1| D-alanine--D-alanine ligase [Anaerococcus tetradius ATCC 35098]
          Length = 345

 Score =  138 bits (348), Expect = 7e-31,   Method: Composition-based stats.
 Identities = 74/336 (22%), Positives = 133/336 (39%), Gaps = 46/336 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L G  SSE ++SL S    +  L +  +K+  + +++      +  K D          
Sbjct: 6   ILCGSPSSEHDISLRSALNISKNLNEEKYKIKLVYINKEGAYSDSFDKIDTSDEFDLVRD 65

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   +    +HG +GEDG +Q +L++  + Y  +G+L+SA
Sbjct: 66  IKVNKAKSIANFLDSLSKEDLSETIIIPAVHGTYGEDGTIQGLLDVAGLKYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ S  +     +     +  NR      F       I  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKNNLRQAKYLYTNREGFGESFAQKCIDEIGLPLIVKPSANGSSVGVS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFY 200
            +   + +        +  +  ++L+E+ + G E         +  +      +    F 
Sbjct: 186 KVTSKEELLEA--GYLALKYDKKVLVEELIVGQEIEFAVVGHMNPDVSRPGAYISDHTFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ KY S  +   LP  +  D  KE Q     A++  GC G +R D  +       +  
Sbjct: 244 DYDAKYFSKTTKESLPYDLDDDKLKEAQDFVRKAYEVCGCEGFARVDIFY-GEDGNFYVN 302

Query: 261 EINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
           EIN  PG TP S F  +       +F E+L  +++D
Sbjct: 303 EINTFPGFTPSSFFARLCELMYKKNFSEVLDILIDD 338


>gi|254432107|ref|ZP_05045810.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
 gi|197626560|gb|EDY39119.1| D-alanine--D-alanine ligase [Cyanobium sp. PCC 7001]
          Length = 365

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 142/351 (40%), Gaps = 58/351 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED----AGFKVSQIDVDRSVGL--------VLAHL 49
            ++ GG S E  +S+ S    A+AL        + VS   +D             VL   
Sbjct: 2   GLVFGGASGEHAISIRSAATVAAALRRGENGRRYAVSCFYIDPQGRWWGPELAEQVLDQG 61

Query: 50  KP-------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
            P                         ++ F VLHG  GEDG +Q +  L+++P+  SG+
Sbjct: 62  TPASPEQLASAPARPGFQGFPTGALAMEVWFPVLHGPNGEDGTIQGLFTLMQVPFVGSGV 121

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---------MDSQHLISPPYVIKPLKG 135
           L SA+ MDK   K  +++  +P  P   V                +  +  P  +KP   
Sbjct: 122 LGSAVGMDKQAMKAALAAAELPQVPYACVEAGELEADPAAVLERLERQLGYPCFVKPANL 181

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD----VTE 191
           GSS+GI        +   L  ++      +L++EQ V   EL C V G         V  
Sbjct: 182 GSSVGISKATDRDGLLAGLRSAA--ALDPRLVVEQGVTARELECAVRGGGPRPLEASVLG 239

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF- 250
                +D+Y Y  KYS   S  V+PA +P  I  + + +A  A +A+   G++R DF + 
Sbjct: 240 EIRYDADWYDYATKYSEGRSHTVIPADVPEGIAAQARGMALEACRALNASGLARVDFFYT 299

Query: 251 -----DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                D    +++  EIN  PG T  S++P +   +G     L+  ++  A
Sbjct: 300 APAPGDGGEGRLWLNEINTLPGFTSQSMYPMLWEASGVPLDTLVDGLITAA 350


>gi|313204537|ref|YP_004043194.1| d-alanine--d-alanine ligase [Paludibacter propionicigenes WB4]
 gi|312443853|gb|ADQ80209.1| D-alanine--D-alanine ligase [Paludibacter propionicigenes WB4]
          Length = 325

 Score =  138 bits (348), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 79/321 (24%), Positives = 144/321 (44%), Gaps = 29/321 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFK---------VSQIDVDRSVGLVLAHLKP 51
           +A++ GG SSE  VSL S     S ++   +          V Q+++     + +     
Sbjct: 5   IAIVAGGNSSEVVVSLDSVAGLYSFMDKERYNLFIVTIVGSVWQVELSDDEKITIDKNDF 64

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D A+  +HG  GE+G++Q   EL+ +PY+  G+LA+A++ +K    Q +
Sbjct: 65  SFTKSGVKTLFDFAYITIHGTPGENGILQGYFELIGLPYSCCGVLAAAITFNKFTCNQYL 124

Query: 101 SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S++          +    I  P  +KP  GGSS G+  +K  + +   + +
Sbjct: 125 KGFGVRVSDSLVLRAGQTVSDEEVAQKIGFPCFVKPNVGGSSFGVTKVKSIEQLQPAIEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTHV 214
           +     GD+++IE ++ G E+TCG+    +               +             +
Sbjct: 185 AF--TEGDEVMIEAFMSGTEITCGIYKTKTKTQVLPITEVVPKNEFFDFDAKYKGEVEEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA+I   + + VQ+L    +  +GC+GI R D++       +  LE+N  PGMT  S  
Sbjct: 243 TPARISTSLTERVQKLTSAIYDILGCKGIVRIDYIISE-GDVINLLEVNTTPGMTATSFI 301

Query: 275 PEMAAYAGYSFRELLLWMVED 295
           P+  A AG   ++++  ++E+
Sbjct: 302 PQQVAAAGLDIKDVMTEIIEN 322


>gi|241894960|ref|ZP_04782256.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
 gi|241871678|gb|EER75429.1| D-alanine--D-alanine ligase [Weissella paramesenteroides ATCC
           33313]
          Length = 382

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 71/341 (20%), Positives = 131/341 (38%), Gaps = 49/341 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +A+L GG SSE +VS  S      A++   + V+   + +   ++ A             
Sbjct: 7   IAMLFGGNSSEHDVSKRSAHNIYDAMDKEKYNVTVFLISKDGIMINAEDSWRVFEGEDED 66

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D  + V+HGN GEDG +QA+  LL+ PY   G
Sbjct: 67  EIVAAAKEKMDLSNPLAPIAVLGEMANIDFFYPVVHGNLGEDGTLQALFRLLKKPYLGPG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGG 136
           I ASA+S DK  +K++++  GV                 +    + L S    +K    G
Sbjct: 127 IAASAMSFDKDLTKRILNQAGVRNTNYVLLTDQNYQDYTYDELVKELDSEVLFVKAASQG 186

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV----TEI 192
           SS+G+  +  +      L  S  +++   +              +  +           +
Sbjct: 187 SSVGVSRVTNEDEYKAALKDSFQYDYKILVEGALDKPREVFISILGNENPRASRLGGIVL 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +        +      LP ++   +  E+  +A  A++A+G  G++R DF+ D 
Sbjct: 247 PEEDVWYDYNNKFVDASGMVFELPVELDQALTDEITDMALRAYKALGLVGLTRMDFMID- 305

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   +  E N  PG T +S++P+M   +G S+  L+  ++
Sbjct: 306 KNGVPYLGEPNTLPGFTNISLYPQMWEVSGISYTHLIDELI 346


>gi|313886885|ref|ZP_07820589.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312923682|gb|EFR34487.1| D-ala D-ala ligase N-terminal domain protein [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 329

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 72/322 (22%), Positives = 127/322 (39%), Gaps = 28/322 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS  S +     ++   F    + + R    V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  SRFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  +   T +         Q  +  P  +KP  GGSS+    I + + +   
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +  + +      +        +   C ++ D S  +    V   D +          S  
Sbjct: 186 VADAYTAAPDVLIEECIVGTEVTCGCVILPDDSFALPVTEVVAHDTFFDYDAKYYGKSDE 245

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  ++ + VQ  +      + C G  R D++          LE+N  PGMT  S 
Sbjct: 246 ITPARISPELTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMTEASF 304

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG    +L+  +++ 
Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326


>gi|323695828|gb|ADX99534.1| D-alanine D-alanine ligase [Streptomyces sp. MJM7001]
          Length = 316

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 90/308 (29%), Positives = 140/308 (45%), Gaps = 15/308 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+ GG+S EREVS  SG   A AL  AG      DV   +   LA  +  + F VLHG
Sbjct: 6   VVVIAGGLSPEREVSQKSGARVADALRRAGVGTELRDVGPDLLPALADAQGAVVFPVLHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG ++ ILEL  +PY  +   A   + DK  +K+     G+    S+ + +     
Sbjct: 66  VAGEDGTIKEILELAGVPYVGARPGACRAAFDKAVAKETFVRAGLSTPASVTLPKEAFHD 125

Query: 121 ----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P  +KP  GGS+ G+  +++ + +P  L   + + + D+ LIE+
Sbjct: 126 LGAAALTARITERLGLPLFVKPRAGGSAFGVSRVERAEQLPEAL--MACFAYHDEALIER 183

Query: 171 YVDGIELTCGVMG--DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            V G E+  GV    +    +  + +     Y Y  +Y+        PA+I     +E  
Sbjct: 184 LVTGTEIAVGVADLGEGPFALPAVEIAAEGLYDYTARYTPGAVEFHHPARISPAAAEEAA 243

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R+A  AH+ +G R +SR+D +      +V  LE NV PGMT  S +P     AG  F + 
Sbjct: 244 RVAVAAHRTLGLRDLSRTDAIVTTE-GEVVVLETNVAPGMTLTSTYPMALEAAGLGFGDF 302

Query: 289 LLWMVEDA 296
              +   A
Sbjct: 303 CRDLAAAA 310


>gi|156977000|ref|YP_001447906.1| D-alanyl-alanine synthetase A [Vibrio harveyi ATCC BAA-1116]
 gi|166198513|sp|A7N512|DDL_VIBHB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|156528594|gb|ABU73679.1| hypothetical protein VIBHAR_05785 [Vibrio harveyi ATCC BAA-1116]
          Length = 329

 Score =  138 bits (347), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 134/325 (41%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGF-----KVSQIDVD-RSVG 43
           +L GG SSE E+SL S       L             ++ G+     ++  +D + + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDPNQKKLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                L  D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   +   QS+   +  +
Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTNKQSVSQAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
               + +Q+L+E+ V   EL                     P   FYSY+ KYS+ +   
Sbjct: 187 F--GYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLADCINTA 328


>gi|332299969|ref|YP_004441890.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
 gi|332177032|gb|AEE12722.1| D-alanine--D-alanine ligase [Porphyromonas asaccharolytica DSM
           20707]
          Length = 329

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/322 (22%), Positives = 126/322 (39%), Gaps = 28/322 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS  S +     ++   F    + + R    V               
Sbjct: 6   IAIICGGYSGEAEVSQRSAQTILKQIDQTLFTPYLVTITRDAWSVTDAEGKAGTIDHALV 65

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                A +   LA+  +HG  GE+GL+Q  L++L IPYT  G+L  AL+ +K      ++
Sbjct: 66  ARFGTAEVTFALAYITIHGTPGENGLLQGYLDMLGIPYTTGGVLCEALTFNKEACNAYLA 125

Query: 102 SCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             G+ +  S  +   T +         Q  +  P  +KP  GGSS+    I + + +   
Sbjct: 126 HHGLRIARSHCLRNHTREFSSEEQELIQSRLRLPLFVKPNTGGSSIATTRIDQWEQLSTA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +  + +      +        +   C V+ D S  +    V   D +          S  
Sbjct: 186 VADAYTAAPDVLIEECIVGTEVTCGCVVLPDDSFALPVTEVVAHDTFFDYDAKYYGKSDE 245

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  + VQ  +      + C G  R D++          LE+N  PGMT  S 
Sbjct: 246 ITPARISPEQTQRVQETSLTIAHLLDCYGFVRIDYII-EADGIPTLLEVNTTPGMTEASF 304

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    AG    +L+  +++ 
Sbjct: 305 IPQQVRAAGLQLSDLITRIIKS 326


>gi|54013449|dbj|BAD60786.1| D-alanyl-D-alanine ligase [Streptomyces lavendulae subsp.
           lavendulae]
          Length = 345

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 102/346 (29%), Positives = 154/346 (44%), Gaps = 53/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------DRSVGLVL 46
           + +L GG S ER+VSL+SG + A AL + G +V  +D               D   G  +
Sbjct: 3   IVILCGGESPERDVSLASGSSVARALLERGHEVLLVDPAAGEPVLAGPLHPGDVVDGFEV 62

Query: 47  AHLKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
               P                            DL F  LHG +GEDG VQ  LE   + 
Sbjct: 63  GKEPPAGHERHGLRQRMAAAFDGGALPALLRDADLVFTALHGGWGEDGWVQERLEAAGVR 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----PYVIKPL 133
           +T +G  A A + +K R++ V+++ GVPV    L      +    + P     P V KP+
Sbjct: 123 FTGAGSTACAAAWNKERAQAVLAAAGVPVTERALWPAAADEVPKEVRPLVAAGPVVAKPV 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
             GSS+ +        +     Q  +      LL+E ++ G E T GV+G   L V EI 
Sbjct: 183 ADGSSVSVHRADSLAELERLAPQMRADGGD--LLVEPFLSGREFTVGVVGGQVLPVIEIE 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC--RGISRSDFLFD 251
           +     + Y  KY     + V PA+IP +    +Q+LA  AH+A+G      SR+DF  D
Sbjct: 241 LSTP-LFDYAAKYQPGAVSEVCPARIPEEFASRLQQLALRAHEALGFGPHTYSRADFRCD 299

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +   LE+N  PG+T  S+ P  A+ AG+++ +L   +V  A+
Sbjct: 300 AA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 344


>gi|312198489|ref|YP_004018550.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
 gi|311229825|gb|ADP82680.1| D-alanine--D-alanine ligase [Frankia sp. EuI1c]
          Length = 318

 Score =  138 bits (347), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/297 (29%), Positives = 139/297 (46%), Gaps = 16/297 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+     L+  G  V   DVD S    L    P +   VLHG  
Sbjct: 9   VLAGGLSPEREVSLRSGRRLCDELDRIGVDVELRDVDGSTLPALDADPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +L+L  +PY  +   A   + DK  +K  +S+ G+   P++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGATPAACRGAFDKATAKAALSAAGIATPPAVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  ++    +   L   + + + D  LIE+ V
Sbjct: 129 AAALIDRVVTRLGLPLVVKPRAGGSAFGVGRVEDAGQLAEAL--MACFGYHDCALIERAV 186

Query: 173 DGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+  GV+      VT       P +  Y Y  +Y+   +T  +PA++  D+ +    
Sbjct: 187 AGVEIAVGVVDTGDGPVTLPAVEIQPVTGVYDYAARYTPGATTFHIPARLDEDVLRAAAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A  AH+ +  R +SR+D + D       +LE+NV PG+T  S +P     AG    
Sbjct: 247 AAVAAHRVLDLRDLSRTDLIIDA-DGVAQFLEVNVAPGLTATSTWPMALKAAGLDLA 302


>gi|315227145|ref|ZP_07868932.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
 gi|315119595|gb|EFT82728.1| D-alanine-D-alanine ligase [Parascardovia denticolens DSM 10105]
          Length = 405

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 145/373 (38%), Gaps = 80/373 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S  +     +   F+   I + +    ++  + P         
Sbjct: 30  IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 89

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG +GEDG +Q +L
Sbjct: 90  PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 149

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------- 124
           E++ +PY   G+LASA  MDK  +K ++ + G+PV P I V+  + DS            
Sbjct: 150 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 209

Query: 125 --------SPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     P  +KP + GSS G+  +       ++   L      +  H  ++L+E+ 
Sbjct: 210 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 269

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----------THVLPAKIPL 221
           +   E+ C V+     D    + P           +  +              +PAK+P 
Sbjct: 270 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 329

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +EV+R+A  A  A+   G+SR D         V   EIN  PG TP+S++ +     
Sbjct: 330 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTEE-GTVIVNEINTLPGFTPISMYSKAWEAT 388

Query: 282 GYSFRELLLWMVE 294
           G S+REL+  ++E
Sbjct: 389 GVSYRELITTLIE 401


>gi|294787296|ref|ZP_06752549.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
 gi|294484652|gb|EFG32287.1| D-alanine--D-alanine ligase [Parascardovia denticolens F0305]
          Length = 400

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 87/373 (23%), Positives = 145/373 (38%), Gaps = 80/373 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           + VL GG + E  +S  S  +     +   F+   I + +    ++  + P         
Sbjct: 25  IVVLYGGRADEHPISCISAGSVLREWDQEKFEAVPIGITKEGVWIVDGVDPRQWELGAQL 84

Query: 52  ---------------------------------------DLAFNVLHGNFGEDGLVQAIL 72
                                                  D  F VLHG +GEDG +Q +L
Sbjct: 85  PEVKEVPGSRRVVLDVSAGGNGFLARDGRTGAVESLGHVDAVFPVLHGPYGEDGTIQGLL 144

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI-------- 124
           E++ +PY   G+LASA  MDK  +K ++ + G+PV P I V+  + DS            
Sbjct: 145 EMMGLPYVGCGVLASAACMDKHYTKVLLKAAGIPVAPGITVDTRSYDSAQGFDPQGKVLC 204

Query: 125 --------SPPYVIKPLKGGSSLGIIVIK-----KDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     P  +KP + GSS G+  +       ++   L      +  H  ++L+E+ 
Sbjct: 205 DLVDEAGLRYPLFVKPSRAGSSFGVTKVDYKADATERQADLAAAVHEAARHDWRVLVEEG 264

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----------THVLPAKIPL 221
           +   E+ C V+     D    + P           +  +              +PAK+P 
Sbjct: 265 IKAREIECAVLAPRHGDKPRTSWPGEIVLDEPGNGAFYDFDSKYMDSSASHVEVPAKLPQ 324

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +EV+R+A  A  A+   G+SR D         V   EIN  PG TP+S++ +     
Sbjct: 325 ETLQEVRRVAARAFIAVDGDGLSRVDTFVTEE-GTVIVNEINTLPGFTPISMYSKAWEAT 383

Query: 282 GYSFRELLLWMVE 294
           G S+REL+  ++E
Sbjct: 384 GVSYRELITTLIE 396


>gi|56751739|ref|YP_172440.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 6301]
 gi|81301184|ref|YP_401392.1| D-alanyl-alanine synthetase A [Synechococcus elongatus PCC 7942]
 gi|81561775|sp|Q5N1A0|DDL_SYNP6 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|123556293|sp|Q31KL4|DDL_SYNE7 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|56686698|dbj|BAD79920.1| D-alanyl-D-alanine ligase [Synechococcus elongatus PCC 6301]
 gi|81170065|gb|ABB58405.1| D-alanine--D-alanine ligase [Synechococcus elongatus PCC 7942]
          Length = 347

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 89/351 (25%), Positives = 150/351 (42%), Gaps = 67/351 (19%)

Query: 1   MAVLMGGISSEREV---------------SLSSGKACASALEDAGFKVSQIDVDRSVGL- 44
           + +L GG S E EV               S               ++V    +D+  G  
Sbjct: 6   VGLLFGGRSGEHEVSIRSAAAIASALADPS-----------NRDRYQVLPFYIDKEGGWH 54

Query: 45  -------VLAHLKP-------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                  VLA+ KP                   ++ F +LHG  GEDG +Q +L L++ P
Sbjct: 55  SGETAAQVLANQKPLFVEEPSDRWQFPADCRDVEVWFPILHGPNGEDGTIQGLLTLMQRP 114

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT------------MDSQHLISP 126
           +  SG+L SAL MDK+  KQ  +   +P    + VNR                 +  +  
Sbjct: 115 FVGSGVLGSALGMDKIAMKQAFAQASLPQVAYVAVNRSQVFSDPCRYTSLLEQIETELGY 174

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P  +KP   GSS+GI  ++    +   L Q+++ +    +              +  D  
Sbjct: 175 PCFVKPANLGSSVGIAKVRDRAELEAALDQAAALDRRLIIEAAIDNPREVECAVLGNDYP 234

Query: 187 LDVTEIAVPKS-DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  +    DFY YE KY+   +  ++PA++  ++ +++Q LA  A QA+   G+SR
Sbjct: 235 QASILGEITYDSDFYDYETKYTDGKAQLLIPAQLSAELQQKLQELAIAAFQAVDASGLSR 294

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            DF  D    ++F  EIN  PG T +S++P++ A +G +F +L+  +++ A
Sbjct: 295 LDFFLDSQ-GQIFINEINTLPGFTALSMYPQLWAASGVAFPDLVHRLIQLA 344


>gi|160914186|ref|ZP_02076408.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
 gi|158433997|gb|EDP12286.1| hypothetical protein EUBDOL_00195 [Eubacterium dolichum DSM 3991]
          Length = 392

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 73/354 (20%), Positives = 135/354 (38%), Gaps = 62/354 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVG----------------- 43
           + V  GG S E E+S+ S      A+    ++V  + + +                    
Sbjct: 17  VVVAFGGESVEHEISILSAHQVMQAMNPMKYEVIPLYIAKDGRLLYHPLNTELERFENLD 76

Query: 44  --------------------------LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
                                      +   +  D+ F +LHG  GEDG  Q  L  L I
Sbjct: 77  KVEREGYEVSLQRRGNRFYMCPNKYSFLRKEISFDMVFPILHGTHGEDGTFQGYLSTLHI 136

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV------NRFTMDSQHLISPPYVIK 131
           PY    +L  A+  DK+  KQ++   G+PV P          +         +  P ++K
Sbjct: 137 PYIGCSVLGGAIGQDKIIMKQILEDSGLPVAPWFYWTLLKPLDDTFFRKAERLGYPLIVK 196

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCGVMG 183
           P   GSS+G+  ++ +  +   ++++  ++              I   V G E TC    
Sbjct: 197 PANLGSSIGVAKVENEVELHRAMIEAYQYDGRVVIEKAIEHVQEINCAVLGDEQTCEASV 256

Query: 184 DASLDVTEIAVPKSDFYSYELKYS-SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +  ++  +  +D Y         +N+   +PA+I  ++  E+Q LA    + +   G
Sbjct: 257 LEEVLSSKDILSYADKYVCGEGVKGIVNTRRCIPARIDEELALEIQTLAKECFRCLCASG 316

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             R DFL++  ++ ++  EIN  PG    S+   +   +   F +L+  +V+ A
Sbjct: 317 TGRIDFLYNRETKDLYINEINTIPG----SLAFYLWEKSNLPFPKLIDRLVQIA 366


>gi|90414751|ref|ZP_01222721.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
 gi|90324196|gb|EAS40774.1| putative D-alanine-D-alanine ligase [Photobacterium profundum 3TCK]
          Length = 330

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 131/325 (40%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44
           +L GG S+E EVSL S       L+   G   +++++                 DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLQSIEGVSYTRVEMKTEGWFDSNNVLCQLNLDRTLQI 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDEKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P +                        IK    GSS+G   +     +   +  + 
Sbjct: 128 IPNTPYVFLSENDDAAHELAAKAFDDWGKVFIKAASQGSSVGCYSVANKDELAEAVNNAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNS--T 212
              + +Q+LIE+ +   EL           V         P+  FYSYE KYS+ +   T
Sbjct: 188 --TYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 TVEAENLTDEQVELIREYARKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP+M  + G+SF   +   ++ A+
Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKAAA 329


>gi|328470679|gb|EGF41590.1| D-alanyl-alanine synthetase A [Vibrio parahaemolyticus 10329]
          Length = 329

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L      KV+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIQNVKVTRVEIKNEGWVTDQGELVYLDLNTKKLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               +   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SNEFNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAL 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +             +          +K  + GSS+G   + + Q+I   +  +
Sbjct: 127 DIPNTPYLFLTRNDEHAHRQAEQAFEKWGKVFVKAARQGSSVGCYSVAEKQAIAKAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
               + DQ+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GYSDQVLVEKAVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +   ++   +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTQEQIDKIHHASETVFKQMNLRHLSRIDFFLTE-DNEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|257784124|ref|YP_003179341.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
 gi|257472631|gb|ACV50750.1| D-alanine--D-alanine ligase [Atopobium parvulum DSM 20469]
          Length = 333

 Score =  138 bits (346), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 86/328 (26%), Positives = 138/328 (42%), Gaps = 36/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG   + ALE  G++V  +D D  +   L   KPD+AF  LHG
Sbjct: 5   VAVIMGGASFERNFSLKSGALVSEALEKCGYEVLPLDADAHLVDTLRAEKPDVAFVCLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V A+LE L+IPY  S   +   + +K     +V          ++     + +
Sbjct: 65  AGGEDGAVPALLEFLKIPYVGSRPASCRAAWNKADMPFIVRQAWSKEESEVIWPPQIVLT 124

Query: 121 QHLIS--------------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                     P  +KP+ GGS++G+  +     +   L    + 
Sbjct: 125 ASAFKDLGAAAALDMVPERLGGGVGFPLAVKPVHGGSAMGLSKVDSADQLGKAL--LGAL 182

Query: 161 NHGDQLLIEQYVDGIELTCGV---MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              D ++I+Q+VDG+E++  V                     Y  + +       H  P 
Sbjct: 183 GFDDSVIIQQWVDGVEVSVTVLSDADGEKTLPPVEISVIKGIYDTDARLDPERIEHFCPV 242

Query: 218 K---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +          P+   + ++R A     A GCR ++R DF++D     V  + +   PG+
Sbjct: 243 RSESLAALGADPVAAREALERAALEVFTAYGCRDLARIDFIWD--GHHVMVMGLKTFPGL 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S+ P     AGY+  ++L  +VE A
Sbjct: 301 TETSLVPMAIEAAGYAVEDVLAQLVEGA 328


>gi|268318672|ref|YP_003292328.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
 gi|262397047|emb|CAX66061.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii FI9785]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 7   IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|227889052|ref|ZP_04006857.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
 gi|227850281|gb|EEJ60367.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii ATCC 33200]
          Length = 375

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 21  IGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 80

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 360


>gi|297172847|gb|ADI23810.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF4000_47G05]
          Length = 345

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 81/330 (24%), Positives = 140/330 (42%), Gaps = 53/330 (16%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGL------------------------------ 44
           S+ S ++  +A++   + V    +D                                   
Sbjct: 2   SVVSARSVYAAIDRERYNVVLAGIDLQGRWCFGGKEARLLESATVVSDELVPARLSGVGA 61

Query: 45  --------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                    L   + D+ F +LHG +GEDG VQ +LEL  + Y  +G+ ASAL MDK  +
Sbjct: 62  FLVSEDGDNLPDSEFDVVFPLLHGPYGEDGTVQGLLELAGLAYVGAGVAASALGMDKALA 121

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKD 147
           + + ++ G+P     ++ R                    P  +KP   GSS+GI  +   
Sbjct: 122 RAIFAASGLPQTQYTVIMRSDWCRAQVPVLERLEGEYDYPLFVKPANLGSSVGISKVHDR 181

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           Q + + L  +S   +  +L++E+ V+     E                 +P ++FY Y  
Sbjct: 182 QGLQVGLELAS--RYDTKLIVERSVENARELECAVLGNEFPQASGVGEIIPGAEFYDYTT 239

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           KY    S  V+PA +     + +Q+LA    +AI C G++R DF        V   EIN 
Sbjct: 240 KYIDDRSELVIPAVLEKSKTETIQQLAIQTFKAIDCSGLARVDFFMC-SDGSVLVNEINT 298

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            PG TP+S++P++ A AG ++ +L+  +++
Sbjct: 299 MPGFTPISMYPKLWAAAGIAYGDLIDRLIQ 328


>gi|163800670|ref|ZP_02194571.1| D-alanylalanine synthetase [Vibrio sp. AND4]
 gi|159176113|gb|EDP60907.1| D-alanylalanine synthetase [Vibrio sp. AND4]
          Length = 329

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 76/324 (23%), Positives = 138/324 (42%), Gaps = 34/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-------------EDAGF-----KVSQIDVD-RSVG 43
           +L GG S+E E+SL S       L             +  G+     ++  +D++ + + 
Sbjct: 7   LLCGGGSAEHEISLLSANFVEQQLNLLENVSVTRVEIKSEGWITNQGELVYLDLNTKKLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               +L+ D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SDKLNLEIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   + + Q++   +  +
Sbjct: 127 GIPNTPYLFLTRNDEHAHQQALQAFDKWGKVFVKAARQGSSVGCYSVTERQALSQAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
               + +Q+L+E+ V   EL                     P   FYSY+ KYS+ +   
Sbjct: 187 F--GYSEQVLVEKSVRPRELEVAAYEMNGQLHITPPGEVIAPDGAFYSYDEKYSNSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + +++ +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTEEQVEVIRQASETVFRQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVED 295
           S+FP+M    G+ F + L   +E 
Sbjct: 304 SMFPKMLQNNGHKFHQFLADCIET 327


>gi|323453883|gb|EGB09754.1| hypothetical protein AURANDRAFT_24617 [Aureococcus anophagefferens]
          Length = 317

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/308 (26%), Positives = 138/308 (44%), Gaps = 18/308 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ER++SL  G   A AL   G++V+ +D+  ++ LV A  + D+ F  LHG
Sbjct: 11  IAVLCGGTSAERDLSLKGGADVAEALRARGYRVTIVDLTPALDLVAALRRVDVVFVCLHG 70

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ  LE+L+IPYT SG++  ++ +DK+R+K+ +  C       I        +
Sbjct: 71  PLGEDGSVQGFLEVLKIPYTFSGVVTQSVCVDKVRTKRYLRGC--EPVRLIPDQLLADGA 128

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              + PP ++K  + GSS G+        +     Q      G + L+EQ++ G++L   
Sbjct: 129 PLRVPPPCMVKDPQSGSSRGVWKCDTADEVRAAAAQC----AGPRCLVEQFISGVDLVVC 184

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLN------------STHVLPAKIPLDIYKEVQ 228
           V    +L   E    K                             + PA +P  +  E +
Sbjct: 185 VNDGEALPAMEFKTDKDWQDLASKNDLWGWAGADGSDGARAAIEKICPATLPAAVVDEAR 244

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A   +  +   G    +F        V+++E++  P MT  S+    A  AG SF ++
Sbjct: 245 DTALAIYDFLEVEGAMNFEFRVTVDGAAVYFVEVSSVPAMTRASVHACCAEAAGLSFEDV 304

Query: 289 LLWMVEDA 296
              ++  A
Sbjct: 305 AERILLTA 312


>gi|54302606|ref|YP_132599.1| D-alanyl-alanine synthetase A [Photobacterium profundum SS9]
 gi|46916030|emb|CAG22799.1| putative D-alanine-D-alanine ligase [Photobacterium profundum SS9]
          Length = 330

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 75/325 (23%), Positives = 132/325 (40%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV-----------------DRSVGL 44
           +L GG S+E EVSL S       L++  G   +++++                 DR++ +
Sbjct: 8   LLCGGGSAEHEVSLVSANYIEQQLKNIEGVSYTRVEMKTEGWFDANNALCQLNLDRTLQV 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  +     +HG  GE G +Q+ LE+  +PY      +S    +K+ +K    +  
Sbjct: 68  GDDKTPINYVIPCVHGYPGETGDLQSFLEMAGLPYLGCDAESSTNCFNKITTKLWFDALN 127

Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P I                        +K    GSS+G   +     +   +  + 
Sbjct: 128 IPNTPYIFLSENDAAAHELAAKAFDDWGKVFVKAASQGSSVGCYSVANKDELAEAVNNAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNS--T 212
              + +Q+LIE+ +   EL           V         P+  FYSYE KYS+ +   T
Sbjct: 188 --TYSNQVLIEKTIKPRELEIAAYQYGDELVISKPGEVACPEDKFYSYEEKYSTDSHSVT 245

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V    +  +  + ++  A  A   +  + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 TVEAENLTDEQVELIREYALKAFTQMKLKDLSRIDFFLSE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP+M  + G+SF   +   ++ A+
Sbjct: 305 MFPKMLEHHGHSFAGFIETAIKTAA 329


>gi|262274030|ref|ZP_06051842.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
 gi|262221840|gb|EEY73153.1| D-alanine--D-alanine ligase [Grimontia hollisae CIP 101886]
          Length = 332

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/329 (25%), Positives = 139/329 (42%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVLAH------------- 48
           +L GG S+E EVSL S     S L       V ++++ ++ G   +              
Sbjct: 8   LLCGGGSAEHEVSLVSANYLESELNKLPSVSVIRVEITKNDGWKDSKGQDCRLNLDKTLK 67

Query: 49  -----LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                +  D A   +HG  GE G +Q++ EL  +PY      AS +  +K+ SK    + 
Sbjct: 68  VGDEIINIDFAVPCIHGFPGETGDIQSLFELAGVPYMGCDSSASNVCFNKITSKLWFDAI 127

Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + +     D                +K    GSS+G   + +  ++   +  +
Sbjct: 128 GIPNTPYVFLTDNNEDSVRSAEDAFDRWGAIFVKAACQGSSVGCYKVTEKSAVREAVASA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYS--SLNS 211
               + +Q+L+E+ V   EL           V         P+  FY+YE KYS  S + 
Sbjct: 188 F--GYSNQVLVEKAVRPRELEIAAYHYNGEVVVTRPGEIACPEDTFYTYEEKYSAGSHSQ 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V P  +  +   +++  A  A   +  + +SR DF   P    V   EIN  PGMTP+
Sbjct: 246 TTVEPENLTEEQIAQMREYAEKAFVHLKLKDLSRIDFFLTPE-GDVLLNEINTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP++  + G++F E L       SC+R
Sbjct: 305 SMFPKLVEHNGHTFSEYLE------SCIR 327


>gi|329666505|gb|AEB92453.1| D-alanine-D-alanine ligase A [Lactobacillus johnsonii DPC 6026]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPQME 66

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|42518194|ref|NP_964124.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
 gi|81832312|sp|Q74LS5|DDL_LACJO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|41582478|gb|AAS08090.1| D-alanine-D-alanine ligase [Lactobacillus johnsonii NCC 533]
          Length = 361

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 146/342 (42%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRKVLDNPKME 66

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIIELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I + V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVETVRKNALKVFQATECSGLARIDSMLRSED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 NEVVLTEVNALPGFTNISMYPKLFEEIGIPYTDLITKLIDYA 346


>gi|323497226|ref|ZP_08102246.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
 gi|323317801|gb|EGA70792.1| D-alanyl-alanine synthetase A [Vibrio sinaloensis DSM 21326]
          Length = 330

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 92/329 (27%), Positives = 139/329 (42%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------VG 43
           ++ GG SSE EVSL S     S LE    F V ++++                     + 
Sbjct: 8   LICGGGSSEHEVSLLSANFIQSQLELNPNFNVVRVEMKSDGWYTADGTLAYLDTNSGTLN 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              A +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDNASIKLDFVVPCIHGYPGETGDIQSMLELSAIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + ++                     +K  + GSS+G   +     I   L  +
Sbjct: 128 GIPNTPYVFLSSNDAQALDAAEKAFEKWGAIFVKAARQGSSVGCYKVTNVSDIQQALDDA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSS--LNS 211
              ++ DQ+LIEQ V   EL                     P+  FY+YE KYSS   ++
Sbjct: 188 F--SYSDQVLIEQAVKPRELEVAAYEFEGKLYVSKPGEIKAPEDAFYTYEEKYSSSSHST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +     + ++  +      +  R +SR DF   P    ++  E+N  PGMTP+
Sbjct: 246 TDVEATNLTEAQLETIRVSSEKVFTQMKLRHLSRIDFFLTPE-GDIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M  + G+SF E L      A C+R
Sbjct: 305 SMFPKMLEHNGHSFSEFL------ADCVR 327


>gi|15639657|ref|NP_219107.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           str. Nichols]
 gi|189025895|ref|YP_001933667.1| D-alanyl-alanine synthetase A [Treponema pallidum subsp. pallidum
           SS14]
 gi|6014942|sp|O83676|DDL_TREPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|229486020|sp|B2S3Q9|DDL_TREPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|3322972|gb|AAC26568.1| D-alanine--D-alanine ligase (ddlA) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189018470|gb|ACD71088.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           SS14]
 gi|291060036|gb|ADD72771.1| D-alanine--D-alanine ligase [Treponema pallidum subsp. pallidum
           str. Chicago]
          Length = 396

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 83/347 (23%), Positives = 153/347 (44%), Gaps = 58/347 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VS+ S +  A  L      V  I + R                    
Sbjct: 4   VTLLYGGRSAEHDVSVRSARFVARTLC-LQHTVMLIGITRRGVWYAQPACALEQLCTGTV 62

Query: 46  ------LAHLKP---------------------DLAFNVLHGNFGEDGLVQAILELLEIP 78
                     +                      D+ F VLHG++GEDG VQ +LE+L++P
Sbjct: 63  ALSIQEDEKRRVCLVPGGGTAGAFVIAGMPCVTDVVFPVLHGSYGEDGTVQGLLEMLQVP 122

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYV 129
           Y   G+ ASAL+MDK+++K +  + G+PV P +   +                 +  P  
Sbjct: 123 YVGCGVCASALAMDKVKAKMLWQAAGLPVLPFVFFRKDAWRMHMQEFVAQLETRLGYPLF 182

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP + GSS+G   ++    +   +  +  W   + +L+E+YV   E+ C + G+    V
Sbjct: 183 VKPAQAGSSVGASAVQTRAPLIPAIEAAFQW--DEVVLVERYVRAREIECALSGNGPYTV 240

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                  +    Y+ +    +++       A +    Y+++  LA  A++A+G  G++R 
Sbjct: 241 HGAGEVIAQGAFYDYEEKYADASVARVLVTAPLETAQYEQITTLALRAYEALGLTGLARV 300

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           DF     + +V+  E+N  PG T +S+FP++   AG + ++L+  ++
Sbjct: 301 DFFLLE-TGEVYVNEVNTMPGFTSISLFPQICQAAGVAPQDLMAQLL 346


>gi|258651717|ref|YP_003200873.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
 gi|258554942|gb|ACV77884.1| D-alanine/D-alanine ligase [Nakamurella multipartita DSM 44233]
          Length = 367

 Score =  137 bits (344), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 85/357 (23%), Positives = 153/357 (42%), Gaps = 60/357 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S E  VS  S     + ++   F V+ + +  +   +               
Sbjct: 8   VAVVFGGRSGEHPVSCISAAGVLANIDTDLFDVTAVGITPAGRWLQMDPAAIPTTGGPTL 67

Query: 46  -------------------LAHLKPDL----------AFNVLHGNFGEDGLVQAILELLE 76
                              L  + P +           F VLHG +GEDG +Q +LEL  
Sbjct: 68  PEVSTGSAVALPVDPTAAALVSIDPSVDRSAVVDVEVVFPVLHGPYGEDGTIQGLLELAG 127

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKP 132
           +PY  +G+LASA +MDK  +K+++++ G+PV   +++   T       +  +  P  +KP
Sbjct: 128 VPYVGAGVLASAAAMDKEFTKKLLAAEGLPVGDWVVLRPGTPTLTAEQKQRLGLPVFVKP 187

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------- 185
            + GSSLG+  + +   +   +  +       ++L+E  V G E+ CGV+          
Sbjct: 188 ARAGSSLGVSRVAEWAELDRAIAIARET--DPKVLVEAAVVGREVECGVLEHPDGRIEAS 245

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                 +      +           ++  +PA +P ++   +  L+  A  A+  +G++R
Sbjct: 246 PPAEIHVGGGYEFYDFDAKYLDDTAASFDIPADLPDEVTARIHELSRRAFAALDAQGLAR 305

Query: 246 SDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            DF   P      +V   E+N  PG TP+S++P M A AG S+R+L+  ++  A   
Sbjct: 306 VDFFVRPDGDLADRVVINEVNTLPGFTPISMYPAMWAKAGVSYRDLITVLIRTALAR 362


>gi|332638511|ref|ZP_08417374.1| D-alanyl-alanine synthetase A [Weissella cibaria KACC 11862]
          Length = 382

 Score =  136 bits (343), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 75/342 (21%), Positives = 132/342 (38%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A+  GG SSE +VS  S +    A++   + V+   + +   ++ A             
Sbjct: 7   IAMFFGGNSSEHDVSKRSARNIYDAMDKEKYNVTVFLISKDGIMINAADSKRVFDGEDED 66

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                     + DL + V+HGN GEDG +QA+  LL+ PY   G
Sbjct: 67  TIVAEAKSKMDLKNPLAPIAVLGEMSEIDLFYPVVHGNLGEDGTLQALFRLLQKPYIGPG 126

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS-------ILVNRFTMDSQHLISPPYVIKPLKGG 136
             ASA+S DK  +K++++  G+                 +    + L +    +K  K G
Sbjct: 127 TAASAMSFDKDLTKRILNQAGIRNTKYVLLTDQNFQDYTYEGLVKELGTEVLFVKAAKQG 186

Query: 137 SSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS+GI  +             L           L   + V    L       + L    +
Sbjct: 187 SSVGISRVTNAAEFEAGVKDALQYDYKVLVEAALTKPREVFISILGNEQPRASRLGGIVL 246

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +        +      LP ++  D+ KE+  +A  A++A+G  G++R DF+ D 
Sbjct: 247 PEQDVWYDYNNKFVDASGMVFELPVELGDDLEKEITDMALNAYKALGLVGLTRMDFMIDA 306

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                +  E N  PG T +S++P+M   +G S+  L+  ++ 
Sbjct: 307 -DGTPYLGEPNTLPGFTNISLYPQMWEVSGISYTNLIDEIIN 347


>gi|188994624|ref|YP_001928876.1| D-alanyl-alanine synthetase A [Porphyromonas gingivalis ATCC 33277]
 gi|229485973|sp|B2RIT4|DDL_PORG3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188594304|dbj|BAG33279.1| putative D-alanine--D-alanine ligase [Porphyromonas gingivalis ATCC
           33277]
          Length = 330

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 75/322 (23%), Positives = 132/322 (40%), Gaps = 30/322 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +AV+ GG S E  VSL S     S L    F    + ++R                    
Sbjct: 6   VAVIAGGYSGEHSVSLKSAAGILSWLGSEPFSAFLVLIERDRWSVRVSEQREVPLDKNDF 65

Query: 42  -VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L    ++ D A+  +HG  GE+GL+Q  L+++ IPY     L  +L+ +K    + +
Sbjct: 66  SFDLDDERIRFDYAYITIHGTPGENGLLQGYLDMIGIPYNTGDTLVESLTFNKYVCNRFL 125

Query: 101 SSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           S  G+ +  S+            D    +  P  +KP  GGSS+    + +   +   + 
Sbjct: 126 SGFGIRIADSMRLTGRDTQPDVADLTARMGLPLFVKPNVGGSSIATTKVVEAAQLLPAIG 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--KYSSLNSTH 213
           Q+   + G++++IE+ + G E+TCG        V            +       +     
Sbjct: 186 QAF--SEGEEVMIERLICGTEVTCGAFLRKKEVVALPVTEVVAHNEFFDFDAKYNGAVEE 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+I  +  + +Q +    ++ +  RGI R D++          LE+N  PGMTP S 
Sbjct: 244 ITPARISDEATRLIQTMTARIYELLNARGIIRVDYII-EADGIPTLLEVNTTPGMTPTSF 302

Query: 274 FPEMAAYAGYSFRELLLWMVED 295
            P+    A    +E+L  ++ D
Sbjct: 303 IPQQVRAAEMDMKEVLCTIIRD 324


>gi|162660760|gb|EDQ48523.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 265

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 82/267 (30%), Positives = 127/267 (47%), Gaps = 7/267 (2%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            SG     AL   G      D        L     D  F  LHG +GEDG VQ  LELL 
Sbjct: 1   MSGTGVLKALLSHGVDAHAFDPAERDLGELKKEGFDRCFIALHGRYGEDGTVQGALELLG 60

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLK 134
           IPYT  G++AS+++MDK+ +K++    G+P     LV            +  P ++KP +
Sbjct: 61  IPYTGPGVMASSIAMDKIMTKRIWRFEGLPTPDWRLVASAGETRAALQALGAPMIVKPSR 120

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG---VMGDASLDVTE 191
            GS++G+  +   +      + +S   +  ++L E++++G E TC        A      
Sbjct: 121 EGSTIGLTKVWTAEECEQAYVLAS--RYDPEVLCEEFIEGDETTCPVLGTGEGAHALPVI 178

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
             V     Y Y+ KY + ++ +  P+ +P +   E++R+   A + +GCRG SR+D +  
Sbjct: 179 RIVAPEGNYDYQNKYFTDDTKYHCPSGLPAEEEAEIRRIVVRAFRTLGCRGWSRADIMIR 238

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMA 278
              RK F LEIN  PGMT  S+ P  A
Sbjct: 239 ASDRKPFLLEINTSPGMTGHSLVPMSA 265


>gi|289178027|gb|ADC85273.1| D-alanine--D-alanine ligase [Bifidobacterium animalis subsp. lactis
           BB-12]
          Length = 394

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 141/372 (37%), Gaps = 77/372 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG + E  +S  S  +   AL+   F+   I + ++    +    P         
Sbjct: 22  VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 81

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+    LHG FGEDG +Q + E
Sbjct: 82  PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 141

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119
           ++ +PY   G+LASA  MDK  +K ++ + G+PV P I ++    D              
Sbjct: 142 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 201

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDGIE 176
             ++  +  P  +KP + GSS G+  +++                H  ++L+EQ +D  E
Sbjct: 202 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 261

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+     D T  A+P         +                     +PAKI  D+ 
Sbjct: 262 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 321

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D         V   EIN  PG T +S+FP+     G  
Sbjct: 322 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 380

Query: 285 FRELLLWMVEDA 296
           FR ++  ++E A
Sbjct: 381 FRTVVTDLIEGA 392


>gi|183601816|ref|ZP_02963185.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219682731|ref|YP_002469114.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190307|ref|YP_002967701.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195713|ref|YP_002969268.1| D-alanyl-alanine synthetase A [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|254767721|sp|B8DVN7|DDL_BIFA0 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|183218701|gb|EDT89343.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           HN019]
 gi|219620381|gb|ACL28538.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           AD011]
 gi|240248699|gb|ACS45639.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           Bl-04]
 gi|240250267|gb|ACS47206.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           DSM 10140]
 gi|295793294|gb|ADG32829.1| D-alanine-D-alanine ligase [Bifidobacterium animalis subsp. lactis
           V9]
          Length = 378

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 88/372 (23%), Positives = 141/372 (37%), Gaps = 77/372 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AVL GG + E  +S  S  +   AL+   F+   I + ++    +    P         
Sbjct: 6   VAVLYGGKADEHSISCISAASFMRALDPELFEAVPIGITKTGTWFVDGQDPLGWNLAEGL 65

Query: 52  --------------------------------------DLAFNVLHGNFGEDGLVQAILE 73
                                                 D+    LHG FGEDG +Q + E
Sbjct: 66  PEAVETPDSREVVLTIGDGGDGFHARNADGSLDSLGHIDVVLPALHGPFGEDGTIQGLFE 125

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD-------------- 119
           ++ +PY   G+LASA  MDK  +K ++ + G+PV P I ++    D              
Sbjct: 126 MMGVPYVGCGVLASAACMDKHYTKVLLRAAGIPVAPGITLDTRHYDASDEFATDGEEFLR 185

Query: 120 --SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-WNHGDQLLIEQYVDGIE 176
             ++  +  P  +KP + GSS G+  +++                H  ++L+EQ +D  E
Sbjct: 186 QVNEAGLQYPLFVKPSRAGSSFGVTKVEQIGDAAALAAAVFEASRHDWRVLVEQGIDARE 245

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------------THVLPAKIPLDIY 224
           + C V+     D T  A+P         +                     +PAKI  D+ 
Sbjct: 246 IECAVVRIHPTDPTRAALPGEVVLDRRSEGDDQFYDFDSKYMDSQASHTEIPAKIGDDLI 305

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             V+  A  A  A+   G+SR D         V   EIN  PG T +S+FP+     G  
Sbjct: 306 ARVRETAVRAFDAVDGMGLSRVDTFVTA-DGDVLVNEINTLPGCTSISMFPQAWEAMGIP 364

Query: 285 FRELLLWMVEDA 296
           FR ++  ++E A
Sbjct: 365 FRTVVTDLIEGA 376


>gi|116628785|ref|YP_813957.1| D-alanine-D-alanine ligase related ATP-grasp enzyme [Lactobacillus
           gasseri ATCC 33323]
 gi|116094367|gb|ABJ59519.1| D-alanine--D-alanine ligase [Lactobacillus gasseri ATCC 33323]
          Length = 375

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 21  VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 80

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I ++V++ A    QA  C G++R D +     
Sbjct: 259 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360


>gi|238853210|ref|ZP_04643596.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282852441|ref|ZP_06261783.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311111376|ref|ZP_07712773.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
 gi|190359189|sp|Q046V3|DDL_LACGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|238834185|gb|EEQ26436.1| D-alanine--D-alanine ligase [Lactobacillus gasseri 202-4]
 gi|282556183|gb|EFB61803.1| D-ala D-ala ligase N-terminal domain protein [Lactobacillus gasseri
           224-1]
 gi|311066530|gb|EFQ46870.1| D-alanine--D-alanine ligase [Lactobacillus gasseri MV-22]
          Length = 361

 Score =  136 bits (342), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 148/342 (43%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 7   VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLANDADSRKVLDNPKME 66

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 67  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 127 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNNKLDYEYVASQLGSDLFVKPSNQGSS 186

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 187 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 244

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I ++V++ A    QA  C G++R D +     
Sbjct: 245 KDSFYTYENKYDDNSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTED 304

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 305 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 346


>gi|323492914|ref|ZP_08098055.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
 gi|323312849|gb|EGA65972.1| D-alanyl-alanine synthetase A [Vibrio brasiliensis LMG 20546]
          Length = 330

 Score =  136 bits (341), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 91/329 (27%), Positives = 135/329 (41%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG SSE EVSL S     S LE  + F V ++++                       
Sbjct: 8   LLCGGGSSEHEVSLVSANFLQSQLELTSDFNVIRVEMKTDGWYTDKGELAYLDTNSGTLN 67

Query: 50  ------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDKESVKLDFIVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P I ++                     +K  + GSS+G   +   + +   L  +
Sbjct: 128 GIPNTPYIFLSENDQHAYQASKEAFEKWGSVFVKAARQGSSVGCYKVTDIEQLQQALNDA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLNS 211
               + DQ+L+EQ V   EL                     P+  FYSYE KYS  S + 
Sbjct: 188 F--GYSDQVLVEQAVKPRELEVAAYQYQGELHISKPGEVIAPEDAFYSYEEKYSASSHSK 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V  + +     + ++  +      +  R +SR DF   P    ++  E+N  PGMTP+
Sbjct: 246 TEVEASNLTEQQLEIIRTSSEKVFTQMRLRHLSRIDFFLTPEGN-IYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M    G+ F E L      A C+R
Sbjct: 305 SMFPKMLENNGHKFSEFL------ADCVR 327


>gi|262395454|ref|YP_003287307.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
 gi|262339048|gb|ACY52842.1| D-alanine--D-alanine ligase [Vibrio sp. Ex25]
          Length = 329

 Score =  135 bits (340), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L       V+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   + +   +   +  +
Sbjct: 127 GIPNTPYLFLTRNDEEAHTQAHKAFEKWGKVFVKAARQGSSVGCYSVTEKDKLSNAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
                 DQ+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GFSDQVLVEKSVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTQAQLDAIQHASERVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|254507725|ref|ZP_05119857.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
 gi|219549422|gb|EED26415.1| D-alanine--D-alanine ligase [Vibrio parahaemolyticus 16]
          Length = 330

 Score =  135 bits (340), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 139/325 (42%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRS------------------VG 43
           +L GG SSE EVS+ S     S L+    F V ++++                     + 
Sbjct: 8   LLCGGGSSEHEVSILSANFIQSQLQKTPEFNVVRVEMKPDGWYTDGGALAYLDTNAGTLN 67

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              + +K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDESTIKLDFVVPCIHGYPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +       +                +K  + GSS+G   +  +  +   L  +
Sbjct: 128 GIPNTPYLFLSNNDDIAYAQTKEALAKWGTIFVKAARQGSSVGCYKVSDESQLKQSLNDA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYS--SLNS 211
               + DQ+L+E+ V   EL                     P+  FYSYE KYS  S ++
Sbjct: 188 F--GYSDQVLVEKAVKPRELEVAAYEYQGQLYVSKPGEIKAPEDAFYSYEEKYSASSHST 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +     + ++  +      +  R +SR DF   P   +++  E+N  PGMTP+
Sbjct: 246 TDVEAENLTEQQLETIRVNSLKVFTQMRLRHLSRIDFFLTPE-GEIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+SF E L   V+++
Sbjct: 305 SMFPKMLEHNGHSFSEFLADCVKNS 329


>gi|261414467|ref|YP_003248150.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261370923|gb|ACX73668.1| D-alanine/D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302327372|gb|ADL26573.1| D-alanyl D-alanine ligase [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 344

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 92/333 (27%), Positives = 147/333 (44%), Gaps = 44/333 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           VLMGG S+E +VS+ SG     A++   + +  + +D+                      
Sbjct: 8   VLMGGPSTEHDVSVVSGTGVVRAMDPEKYNIHPVLIDKDGTWHWSSRELSPYQKANFSEN 67

Query: 47  -----------AHLKP--------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                          P        D+AF  LHG +GEDG +QA+LE   IPYT  G+LAS
Sbjct: 68  YFHSLEGTAANKKKSPALSELPSADIAFLALHGKWGEDGHIQAMLENWNIPYTGCGLLAS 127

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGI 141
           AL+MDK++SK++  + G+P  P  ++ +              +  P VIK   GGSS+GI
Sbjct: 128 ALAMDKIKSKEIYRANGIPTPPYRVIWKHDFTGDTLVSVADELGYPLVIKDPLGGSSIGI 187

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + K                  ++LL E+++ G E +CG +              +  Y 
Sbjct: 188 GIAKNLDEAGKIAQDLFKD--SNRLLCEKFIAGGEASCGYIEGEKPLPPTEMRMTTREYF 245

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                 +     V PA+   ++   +Q L   AH A+G  G SR+D        ++F +E
Sbjct: 246 DFEAKYNGECQEVTPAEFAPELTARIQELVKNAHYALGGAGYSRTDVRIT-KDGELFAIE 304

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            N  PGMTP S+ P+ AA  G ++ +L+  +++
Sbjct: 305 TNTLPGMTPTSLLPQQAACVGITYSQLIDLIID 337


>gi|85858831|ref|YP_461033.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721922|gb|ABC76865.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 355

 Score =  135 bits (339), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 101/337 (29%), Positives = 161/337 (47%), Gaps = 44/337 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++M G+SSE+EVSL SG+   S ++   +    I +D                  R V
Sbjct: 11  VGIIMAGLSSEKEVSLESGRNIFSKIDRRKYSPIPIFMDSDAALWEIPLKLLMRNCTRDV 70

Query: 43  GLVLAHL-----------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
              LA             + DL F  LHG +GEDG +Q +LELL+IPYT SG+LASAL M
Sbjct: 71  EEDLAEEAVRVPYEELKTRVDLVFLALHGKYGEDGCMQGLLELLKIPYTGSGVLASALGM 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------HLISPPYVIKPLKGGSSLGI 141
           DK+ S++V+   G+ V  ++ V R     +            I  P V+KP + G S G+
Sbjct: 131 DKLASRRVLEINGIDVPRTVPVFRGAWKPEEENALFERIEQEIGFPCVVKPSREGCSTGV 190

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY- 200
             +     +   L  +  W      L+E+++DG+E+TCG++G         +   +    
Sbjct: 191 KKVMSRAGLSDALNGAFLW--DCTALVEEFIDGMEVTCGILGGNPPTALTPSETIATSDV 248

Query: 201 -SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
            S E K+      +  PA++P +   ++Q +A  A +A+  +G +R D        +V  
Sbjct: 249 LSLEDKFLYGQGENKTPARLPGETLMKIQEVAVKAFEALDLKGYARIDMFVTSA-GRVLV 307

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           LE N QPGMTP ++    AA +G +   L+  ++E A
Sbjct: 308 LEPNTQPGMTPSTVLFHQAAASGITQTGLVDRILEAA 344


>gi|254479318|ref|ZP_05092657.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
 gi|214034738|gb|EEB75473.1| putative D-ala D-ala ligase N-terminal domain protein
           [Carboxydibrachium pacificum DSM 12653]
          Length = 383

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 79/358 (22%), Positives = 129/358 (36%), Gaps = 71/358 (19%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------- 48
            GG S E EVS+ +G      +    ++   + V R                        
Sbjct: 2   FGGKSVEHEVSIITGLQVIENMNKEKYEPIPVYVGRDGRWYTGKDLLDISNYKDIPSLLK 61

Query: 49  --------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLE 76
                                           +  D+ F   HG  GEDG +Q + +L  
Sbjct: 62  KCEQVVLPPVPGLNKLYYYPFRKKFMSKEYDYIDVDVIFPAFHGTHGEDGTMQGLFQLAN 121

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---------SQHLISPP 127
           IPY  SG++ SA  MDK+  K +  +  +P+   +   R   +          +  +  P
Sbjct: 122 IPYVGSGVVGSATGMDKVIMKDIFKANNLPIVNYLWFLRKEYEKNKEAMLDLIESKLKYP 181

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
             +KP   GSS+GI   K    +   +  +  ++    ++ E   D +E+ C VMG    
Sbjct: 182 MFVKPANLGSSIGISKAKNRDELFDAIEIAIYYDR-KIIVEEAVKDPMEVNCSVMGIDRD 240

Query: 188 DVTEIAVPKSDFYSYELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLAHQAI 238
               +      +  +                     +PA IP +  KE+Q LA    Q +
Sbjct: 241 LEVSLCEMPVPWEEFLSYQDKYMRKEKGGKGSTTRQIPAPIPEEKTKEIQELAKKVFQIL 300

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C G++R DFL +  + KV+  EIN  PG    S    +    G SF +L+  ++E A
Sbjct: 301 DCSGLARIDFLLEKETMKVYVNEINTIPG----SFAFYLWKPLGISFEKLIDRLIEYA 354


>gi|170739250|ref|YP_001767905.1| D-alanyl-alanine synthetase A [Methylobacterium sp. 4-46]
 gi|190359166|sp|B0UB90|DDL_METS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|168193524|gb|ACA15471.1| D-alanine--D-alanine ligase [Methylobacterium sp. 4-46]
          Length = 382

 Score =  135 bits (339), Expect = 9e-30,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 136/346 (39%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVL------------- 46
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+      L             
Sbjct: 5   VALLFGGRSAEHEVSIVSAGNVARALDPDRYAVTPIAIDKETGAWRLCPPLAPGEAPAMV 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+   VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  REGPRVAFLPGGGGRLAVLGETASVSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
           G++ SA +MDK  +K+++   G+P+ P           +T   + L S    +KP   GS
Sbjct: 125 GVIGSAAAMDKDVAKRLMRDAGLPIVPYLVAGPRRGVAYTEAVEALESRTLFVKPANMGS 184

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           S+G+  +         L  + ++   D+ ++ +               + +      P  
Sbjct: 185 SVGVSRVADAGQFDQALAHAFAY---DEKILIERAVPRAREIEFAVLETAEGEVRVSPPG 241

Query: 198 DFYSYELKYSSLNSTHV---------LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +                         +PA +   + + +  LA  A +A+ C G++R D 
Sbjct: 242 EIAPAAAHGFYGYDAKYVDPDGAALLIPASLAPALAERMGGLAARAFEALACAGLARVDL 301

Query: 249 LFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             DP   + +F  E+N  PG T +S++P++   AG +   L+  ++
Sbjct: 302 FLDPDDPEGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 347


>gi|304440570|ref|ZP_07400456.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
 gi|304370946|gb|EFM24566.1| D-alanine-D-alanine ligase [Peptoniphilus duerdenii ATCC BAA-1640]
          Length = 395

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 97/366 (26%), Positives = 146/366 (39%), Gaps = 76/366 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV----GLVLAHL------- 49
           +AVL GG+S E EVS+ +G      ++   +    + V +      G  +          
Sbjct: 8   IAVLFGGVSVEHEVSVITGMQVVENMDKTKYNPIPVLVTKEGKFLSGDAIKDFGNIKRNK 67

Query: 50  ----------------------------------------KPDLAFNVLHGNFGEDGLVQ 69
                                                   K D  F  LHG FGEDG VQ
Sbjct: 68  LEDAKEVFFKPVRGDFNLYTEEEQGGGLFSKKTSGTVVFAKIDAVFVALHGTFGEDGAVQ 127

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHL 123
            IL+ + IPYT   + A+A+ MDK+  K V  S  +P+       R              
Sbjct: 128 GILQFIGIPYTGCAVNAAAVGMDKVIMKDVFKSQNIPMTDYFYFYRDFYKFDIVKAEAEK 187

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--- 180
           I  P  +KP   GSS+GI   K +  +   +  +  ++    ++ +      E+ C    
Sbjct: 188 IGYPVFVKPANLGSSVGISKAKNEAELKDAVEVAMHYDR-KIIVEKSVEKPREINCAVLG 246

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYS----------SLNSTHVLPAKIPLDIYKEVQRL 230
              D    +TE  +   DF +Y+ KY             N    LPA IP ++ +EV+RL
Sbjct: 247 YEDDLQASLTEEPITWEDFLTYDDKYKSGGKGSKSVGMKNQKKNLPANIPDEMTEEVKRL 306

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A LA ++I   G++R DFL D  + KV+  EIN  PG    SI   +    G SF+EL+ 
Sbjct: 307 AKLAFRSIDAMGVARIDFLVDE-NEKVYVNEINTLPG----SIAFYLFEPMGISFKELID 361

Query: 291 WMVEDA 296
             ++ A
Sbjct: 362 RQIDLA 367


>gi|153832853|ref|ZP_01985520.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
 gi|148870987|gb|EDL69877.1| D-alanine--D-alanine ligase [Vibrio harveyi HY01]
          Length = 329

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 131/325 (40%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVG---------LVLAHLK-- 50
           +L GG SSE E+SL S       L       V+++++              L L   K  
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNQKKLC 66

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SDNLSLDVDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   + + QS+   +  +
Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKQSVSQAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
               + +Q+L+E+ V   EL                     P   FYSY+ KYS+ +   
Sbjct: 187 F--GYSEQVLVEKSVKPRELEVAAYEMNGELHITKPGEVIAPDGAFYSYDEKYSTSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +     + ++  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTEAQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DGEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLADCINTA 328


>gi|282882300|ref|ZP_06290931.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300813906|ref|ZP_07094210.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
 gi|281297850|gb|EFA90315.1| D-alanine--D-alanine ligase [Peptoniphilus lacrimalis 315-B]
 gi|300511969|gb|EFK39165.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus sp.
           oral taxon 836 str. F0141]
          Length = 390

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 86/365 (23%), Positives = 137/365 (37%), Gaps = 76/365 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK------ 50
           +AV+ GGIS E EVS+ +G      L+   F    I + +         L   K      
Sbjct: 4   VAVVFGGISVEHEVSVITGLQVIENLDKEQFNPIPIYISKEGRFYSGEMLKDFKTYKEGK 63

Query: 51  ----------------------------------------PDLAFNVLHGNFGEDGLVQA 70
                                                    D  F  LHG FGEDG +Q 
Sbjct: 64  YREATEVFIIPQKGDRFLYSTKVVGGIFKKTHTENYIYARIDAIFPALHGTFGEDGAIQG 123

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-------RFTMDSQHL 123
           + E + IPY   G+LA A  MDK+  K +  +  +PV              +  +     
Sbjct: 124 LFEYMNIPYVGCGVLAGACGMDKVIMKDIFKANNIPVVDYTYFYRSELKDLQSVLKKCEK 183

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---- 179
           +  P ++KP   GSS+GI  +K    +   L  +S+++    ++ +   D  E+      
Sbjct: 184 LGYPLIVKPANLGSSIGISKVKDTLELTKALEVASNYDK-KIIVEKCLTDHREINVAVLG 242

Query: 180 --------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                         + +       K    S     S  N    LPA +  +++ ++ +LA
Sbjct: 243 DQDDLKVSACEEPITAEDILTYGDKYVGSSKTKMASQENQKKKLPADLSKEVHNKICQLA 302

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + +AI   G+SR DFL    + +V+  EIN  PG    SI   +    G SF++LL  
Sbjct: 303 KESFKAIDATGVSRIDFLL--KNDEVYVNEINTLPG----SIAFYLFEVEGLSFKDLLTK 356

Query: 292 MVEDA 296
           ++E A
Sbjct: 357 LLEIA 361


>gi|269959743|ref|ZP_06174122.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
 gi|269835497|gb|EEZ89577.1| D-alanine--D-alanine ligase [Vibrio harveyi 1DA3]
          Length = 329

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 77/325 (23%), Positives = 131/325 (40%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L       V+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIENVSVTRVEIKNEGWVTNQGELVYLDLNTKKLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                L  D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SDNLSLDIDFIVPCIHGFPGETGDIQSMFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   + + +++   +  +
Sbjct: 127 GIPNTPYLFLTRNDEQAHEQALQAFDKWGKVFVKAARQGSSVGCYSVTEKEALSQAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
                 +Q+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GFSEQVLVEKSVKPRELEVAAYEMNGQLFITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  +  + ++  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTEEQVEAIRVASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLADCIHTA 328


>gi|160286234|pdb|2YZG|A Chain A, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286235|pdb|2YZG|B Chain B, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
 gi|160286236|pdb|2YZG|C Chain C, Crystal Structure Of D-Ala:d-Ala Ligase From Thermus
           Thermophilus Hb8
          Length = 319

 Score =  134 bits (337), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 91/323 (28%), Positives = 147/323 (45%), Gaps = 35/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------------- 48
           ++ GG+S E EVSL S +     +    F      + +    +L                
Sbjct: 5   LIAGGVSPEHEVSLLSAEGVLRHIP---FPTDLAVIAQDGRWLLGEKALTALEAKAAPEG 61

Query: 49  ----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
                      + D+ F +LHG FGEDG VQ  LELL  PY  +G+ ASAL  DK  SK+
Sbjct: 62  EHPFPPPLSWERYDVVFPLLHGRFGEDGTVQGFLELLGKPYVGAGVAASALCXDKDLSKR 121

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V++  GVPV P + V +          P + +KP   GSS+GI  +++ Q +   L  + 
Sbjct: 122 VLAQAGVPVVPWVAVRKGEPPVVPFDPP-FFVKPANTGSSVGISRVERFQDLEAALALAF 180

Query: 159 SWNHGDQLLIEQYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              + ++ ++E+ +  +   E+                  ++ FY YE KY+   +  ++
Sbjct: 181 --RYDEKAVVEKALSPVRELEVGVLGNVFGEASPVGEVRYEAPFYDYETKYTPGRAELLI 238

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +     + VQ LA  A++ +G RG +R DF       +++  E+N  PG TP S +P
Sbjct: 239 PAPLDPGTQETVQELALKAYKVLGVRGXARVDFFLAE--GELYLNELNTIPGFTPTSXYP 296

Query: 276 EMAAYAGYSFRELLLWMVEDASC 298
            +    G ++ ELL  +VE A  
Sbjct: 297 RLFEAGGVAYPELLRRLVELALT 319


>gi|91226137|ref|ZP_01261027.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
 gi|91189371|gb|EAS75649.1| D-alanylalanine synthetase [Vibrio alginolyticus 12G01]
          Length = 329

 Score =  134 bits (336), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 127/325 (39%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L       V+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   +     +   +  +
Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVTGKDKLSNAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
                 DQ+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTQIQLDSIQHASETVFKQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|315181561|gb|ADT88474.1| D-alanine--D-alanine ligase [Vibrio furnissii NCTC 11218]
          Length = 334

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 86/329 (26%), Positives = 132/329 (40%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVSL S       L     F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P +                        IK  + GSS+G    K  +   +     
Sbjct: 128 DIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCY--KVTKEDQIAAAID 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
           +++++ +Q+L+EQ V   EL                     P+  FYSYE KYS+ + + 
Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245

Query: 214 VLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +  +    + ++A      +  R +SR DF   P    V+  E+N  PGMTP+
Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPE-GHVYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M    G+ F E L      A C+R
Sbjct: 305 SMFPKMLENNGHQFDEFL------ADCVR 327


>gi|261251191|ref|ZP_05943765.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
 gi|260938064|gb|EEX94052.1| D-alanine--D-alanine ligase [Vibrio orientalis CIP 102891]
          Length = 330

 Score =  133 bits (335), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 88/325 (27%), Positives = 133/325 (40%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGLVL--------------- 46
           +L GG SSE EVSL S     S LE    F V ++++                       
Sbjct: 8   LLCGGGSSEHEVSLVSANFLQSQLEQTPEFNVVRVEMKTDGWYTDSGDLAYLDSNSGTLN 67

Query: 47  ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 K D     +HG  GE G +Q++LEL  IPY   G  AS  S +K+ SK    + 
Sbjct: 68  TDSQQTKLDFVVPCIHGFPGETGDIQSMLELSGIPYLGCGPEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P I             +          +K  + GSS+G   + +   +   L  +
Sbjct: 128 GIPNTPYIFLSENSQQAYELSEQAFEKWGSVFVKAARQGSSVGCYKVTELSQLQAALDNA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE----IAVPKSDFYSYELKYSSLNSTH 213
               + DQ+L+EQ V   EL                  I  P+  FYSYE KYS+ + + 
Sbjct: 188 F--GYSDQVLVEQAVKPRELEVAAYELDGELHITAPGEIIAPEDAFYSYEEKYSTESHST 245

Query: 214 VL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +  +    ++  +      +  R +SR DF   P S +++  E+N  PGMTP+
Sbjct: 246 TKVVATDLNDEQLAVIRTSSEKVFTQMRLRHLSRIDFFLTP-SGEIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+SF   L   V+ +
Sbjct: 305 SMFPKMLENNGHSFAAFLANCVKTS 329


>gi|327404081|ref|YP_004344919.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
 gi|327319589|gb|AEA44081.1| D-alanine--D-alanine ligase [Fluviicola taffensis DSM 16823]
          Length = 321

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/319 (27%), Positives = 140/319 (43%), Gaps = 30/319 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           + +  GG SSE E+SL S +         G++V  I V      V               
Sbjct: 4   VGLFCGGYSSEFEISLKSAQTIMDNFP-LGYEVVPIHVVEEGWFVPMNTEKLPFSIESMS 62

Query: 47  -----AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   K D+    +HGN GE+G +QA+L++  +PY +S  LAS LS DK    Q ++
Sbjct: 63  YSINGKERKIDIGLIYIHGNPGENGKIQALLDIKGVPYVNSNALASELSFDKWYCNQFLA 122

Query: 102 SCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             GVPV  S+ +N     +   I      P  +KP   GSS GI  + K   + + L ++
Sbjct: 123 RFGVPVAKSLFLNSPKKFTNQEILDQLGLPCFVKPCDSGSSFGISKVSKASDLQVALDKA 182

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL--NSTHVL 215
                GD ++IE ++ G E+TCG+    S  VT           +    +     S  + 
Sbjct: 183 F--EEGDTIVIESFLKGTEVTCGIYRSTSGLVTLPLTEIVTENDFFDYEAKYLGQSQEIT 240

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA+IP  I + V   +   +  +  + I+R DF+   +    + +E+N  PG +  S+ P
Sbjct: 241 PARIPDSIKELVWEQSKQVYSLLQLKSIARIDFML--VDDIPYVIEVNTTPGFSAASLVP 298

Query: 276 EMAAYAGYSFRELLLWMVE 294
           +M A AG S  +    + E
Sbjct: 299 QMLAEAGISIIDFWTEIFE 317


>gi|262403615|ref|ZP_06080173.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
 gi|262350119|gb|EEY99254.1| D-alanine--D-alanine ligase [Vibrio sp. RC586]
          Length = 334

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 83/319 (26%), Positives = 132/319 (41%), Gaps = 36/319 (11%)

Query: 3   VLMGGISSEREVSLSSGKACAS--ALEDAGFKVSQIDVDRSVGLVLA------------- 47
           +L GG SSE E+SL S        AL    F V ++++ +                    
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLALTPQ-FNVIRVEMKKDGWFSEQGELVYLDTNSATL 66

Query: 48  -----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    +
Sbjct: 67  NGDKISQPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDA 126

Query: 103 CGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P + + + T                  +K  + GSS+G   + +++ I   +  
Sbjct: 127 LDIPNTPYLFLTQNTTDSIEKAQQAFRNWGSIFVKAARQGSSVGCYKVTREEQIAPAIEA 186

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLN 210
           +      +Q+L+E+ V   EL                     P+  FYSYE KYS  S +
Sbjct: 187 AF--GFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEVIAPEDAFYSYEEKYSASSHS 244

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T +    +    +  +Q+ A      +  R +SR DF       +++  E+N  PGMTP
Sbjct: 245 RTVIEAEHLTEAQHNLIQQCAARVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTP 303

Query: 271 VSIFPEMAAYAGYSFRELL 289
           +S+FP+M  + G+ F E L
Sbjct: 304 ISMFPKMLEHNGHQFSEFL 322


>gi|269968807|ref|ZP_06182794.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
 gi|269826584|gb|EEZ80931.1| D-alanine--D-alanine ligase [Vibrio alginolyticus 40B]
          Length = 329

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 78/325 (24%), Positives = 128/325 (39%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDV------------------DRSVG 43
           +L GG SSE E+SL S       L       V+++++                   + + 
Sbjct: 7   LLCGGGSSEHEISLLSANFVEQQLNLIEDVHVTRVEIKNEGWMTNQGELVYLDLNTKQLC 66

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
              ++   D     +HG  GE G +Q++ E+  IPY   G  AS+ S +K+ SK    + 
Sbjct: 67  SSESNQTIDFIVPCIHGFPGETGDIQSLFEIAGIPYLGCGPEASSNSFNKITSKLWYDAI 126

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        +K  + GSS+G   + +   +   +  +
Sbjct: 127 GIPNTPYLFLTRNDEEAHVQAHKAFEKWGKVFVKAARQGSSVGCYSVIEKDKLSNAVNDA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNS-- 211
                 DQ+L+E+ V   EL                     P   FYSY+ KYSS +   
Sbjct: 187 F--GFSDQVLVEKAVKPRELEVAAYEMNGQLHITKPGEVIAPDGAFYSYDEKYSSSSHSL 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 245 TEVEAKNLTQVQLDSIQHASETVFRQMNLRHLSRIDFFLTE-DDEIYLNEVNTFPGMTPI 303

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M    G+ F E L   +  A
Sbjct: 304 SMFPKMLQNNGHKFHEFLEDCINSA 328


>gi|260770475|ref|ZP_05879408.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
 gi|260615813|gb|EEX40999.1| D-alanine--D-alanine ligase [Vibrio furnissii CIP 102972]
          Length = 334

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 88/329 (26%), Positives = 134/329 (40%), Gaps = 40/329 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE EVSL S       L     F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEVSLVSANYLQQQLSLTPDFDVVRVEMKKEGWFSDTGEIVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                LK D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  GEGLSLKIDFVIPCIHGYPGETGDIQSMFELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P +                        IK  + GSS+G    K  +   +     
Sbjct: 128 GIPNTPYLFLSENNAQALKNTQDAFAKWGSLFIKAARQGSSVGCY--KVTKEDQIAAAID 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
           +++++ +Q+L+EQ V   EL                     P+  FYSYE KYS+ + + 
Sbjct: 186 AAFSYSEQVLVEQAVKPRELEVAAYEMNGELFITKPGEIIAPEDAFYSYEEKYSTDSHSR 245

Query: 214 VLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +  +    + ++A      +  R +SR DF   P    V+  E+N  PGMTP+
Sbjct: 246 TEVEAGNLTDEQQALIHQVAQKVFTHMKLRHLSRIDFFLTPE-GHVYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S+FP+M A  G+ F E L      A C+R
Sbjct: 305 SMFPKMLANNGHQFDEFL------ADCVR 327


>gi|300362570|ref|ZP_07058746.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
 gi|300353561|gb|EFJ69433.1| D-alanine--D-alanine ligase [Lactobacillus gasseri JV-V03]
          Length = 375

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 79/342 (23%), Positives = 149/342 (43%), Gaps = 48/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + ++ GG SSE EVS+ S       ++   F V  + +     L                
Sbjct: 21  VGLIFGGNSSEYEVSIMSAHNIYEEIDTNKFDVYPMWITNDGYLADDADSRRVLDNPKME 80

Query: 46  ------------LAHLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                       +  LK     D+ F ++HGN GEDG +Q +  +L+ P+    +LA+A+
Sbjct: 81  VANPHKVANISNIVELKDRPEIDVFFPIVHGNLGEDGCLQGLFRVLDKPFVGDDVLAAAV 140

Query: 90  SMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +MDK  +K +    GVPV   I                       +     +KP   GSS
Sbjct: 141 TMDKEMTKILAQRAGVPVAKWIAVKRFEYNDPDNEKLDYEYVASQLGSDLFVKPSNQGSS 200

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  ++   + L ++    + D++L+E+ V G E+   V+G+    V  +    + 
Sbjct: 201 VGVSHVTNEKEYKVALAEAF--KYDDKVLVEETVHGTEVETAVLGNDKPIVAGVGQIINA 258

Query: 199 FYSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S+    +  +        +PAK+P  I ++V++ A    QA  C G++R D +    +
Sbjct: 259 KDSFYTYENKYDDDSTSTLEIPAKLPEGIVEKVRKNALKVFQATECSGLARIDSMLRTEA 318

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           ++V   E+N  PG T +S++P++    G  + +L+  +++ A
Sbjct: 319 KEVVLTEVNALPGFTNISMYPKLFEEVGIPYTDLITKLIDYA 360


>gi|227486334|ref|ZP_03916650.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
 gi|227235745|gb|EEI85760.1| D-alanine--D-alanine ligase [Anaerococcus lactolyticus ATCC 51172]
          Length = 347

 Score =  133 bits (334), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 73/337 (21%), Positives = 133/337 (39%), Gaps = 47/337 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD---------- 52
           +L GG SSE +++L S       L    ++   + +D+           D          
Sbjct: 6   ILCGGPSSEHDIALRSALNIVKNLNKDKYEKKIVYIDKEGKFSPTFKDFDPADEFSLVKK 65

Query: 53  ------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   +   V+HG +GEDG +Q  L+ + + Y  +G+L+SA
Sbjct: 66  IDKSTQASIADFLLEVSKEDLENTIILPVVHGTYGEDGTIQGFLDAVGLKYIGNGLLSSA 125

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGII 142
           + MDK+ S  +     +                F       +  P ++KP   GSS+G+ 
Sbjct: 126 ICMDKVTSNDIFEKSKLRQAKYKYCYKEDFDDDFMDSCIAYVGLPLIVKPSANGSSVGVS 185

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY-- 200
            ++  +          +  +  +LL+E+ + G E+   V+GD+              +  
Sbjct: 186 RVENKKDFKKA--GLEALKYDRKLLVEELIIGQEIELAVLGDSDNIDVSDPAAYITDHVF 243

Query: 201 -SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
             ++ KY S ++   LP K+  +  ++ +  A   ++A GC G +R D  +    R+ + 
Sbjct: 244 LDWDAKYFSKSTREELPYKMDENDKQKAKDFARACYKAAGCEGFARVDIFY-GNDRQFYI 302

Query: 260 LEINVQPGMTPVSIFPEMAAYA-GYSFRELLLWMVED 295
            EIN  PG TP S F  MA       F  +L  +++D
Sbjct: 303 NEINTFPGFTPSSFFARMAMNLYDVDFSSILDKLIDD 339


>gi|329943199|ref|ZP_08291973.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|332287779|ref|YP_004422680.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|313848352|emb|CBY17355.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila psittaci RD1]
 gi|325507253|gb|ADZ18891.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci 6BC]
 gi|328814746|gb|EGF84736.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila psittaci Cal10]
 gi|328915037|gb|AEB55870.1| UDP-N-acetylmuramate--alanine ligase, putative [Chlamydophila
           psittaci 6BC]
          Length = 810

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 67/331 (20%), Positives = 122/331 (36%), Gaps = 39/331 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S E ++SL S +     L    + V    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISLLSARNVVRYLSPEYYDVQYFIIDRQGLWSKVSTIECEDYEGKGH 513

Query: 45  -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                    A    D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ +K
Sbjct: 514 YVLSSEITEALTHVDFILPILHGPFGEDGTLQGFLEIINKPYAGPSLLFSSVTMDKIMTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ +S GVPV P   +          +           P  +K    GSS+G+  +  ++
Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKISEAFTFPMFVKTAHLGSSIGVFEVHNEE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++    +   +          +   +S         +     +      
Sbjct: 634 ELKAKISEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYEEK 693

Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   A+I  D+         V+      ++ I  +G  R DF  D      +  E+
Sbjct: 694 YGLNGRASAQIQYDLDLSEESKIRVKEFTERVYRVIQGQGSCRVDFFLDDEGN-FWLSEM 752

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F    A  G++F +++  ++
Sbjct: 753 NPIPGMTQASPFLHDFARLGWTFEQIIHQLI 783


>gi|297171881|gb|ADI22869.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0500_32L01]
          Length = 281

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 80/262 (30%), Positives = 136/262 (51%), Gaps = 15/262 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ V S+ G+P   
Sbjct: 12  EFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARTVFSAVGLPQTR 71

Query: 110 SILVNRFTMD---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           S++++R              +   + P  +KP   GSS+GI  +     +   L  +   
Sbjct: 72  SVVIHRSCWRGSPGQVVEEVEREFNYPLFVKPASLGSSVGISKVHDRNQLIEGLNGAGI- 130

Query: 161 NHGDQLLIEQYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +  ++LIE  V+    IE       +  +      VP ++FY Y  KY    +T ++PA
Sbjct: 131 -YDTKILIEVAVEAAREIECAVLGGENPEVSGVGEIVPGAEFYDYRTKYIDDCATLIIPA 189

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P     ++Q ++  A +AI C G++R DFL      ++F  EIN  PG TP+S++P++
Sbjct: 190 DLPEATVSQIQEMSIRAFRAIDCSGLARVDFLIS-QDGEIFLNEINTMPGFTPISMYPKL 248

Query: 278 AAYAGYSFRELLLWMVEDASCL 299
              AG S+ +L+  +++ A   
Sbjct: 249 WEEAGLSYPDLIDKLIQLALAR 270


>gi|221195322|ref|ZP_03568378.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
 gi|221185225|gb|EEE17616.1| D-alanine--D-alanine ligase [Atopobium rimae ATCC 49626]
          Length = 333

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 81/328 (24%), Positives = 139/328 (42%), Gaps = 36/328 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+MGG S ER  SL SG+  + +L  +GF V  +D D  +   L   KPD+AF  +HG
Sbjct: 5   VAVIMGGTSFERNFSLLSGRLVSESLARSGFDVLTLDADAHLVDTLRAEKPDVAFICMHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG V A+LE L IPY  S   +   + +K     ++          ++     +  
Sbjct: 65  AGGEDGAVPALLEFLRIPYVGSRPASCRAAWNKADMPFLMRRVYGKHESLVVWPPQLVLP 124

Query: 121 QHLIS--------------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                     P  +KP+ GGS++G+  + K + +   L    + 
Sbjct: 125 ASAFKDLGAAKALDIIPERLGGGSGFPLAVKPVHGGSAMGLSRVDKPEDLGHAL--MGAL 182

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPA 217
            + D ++I+ +V+G+E++  V+G    +     V        Y  + +  +    H  P 
Sbjct: 183 AYDDSVIIQHWVEGVEVSVTVLGTPGSEKVLPPVEIEVKEGIYDTDARLETSRVNHFCPV 242

Query: 218 K---------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +            +    +++ A   ++A  CR  +R DF++D    KV  + +   PG+
Sbjct: 243 RDESLAALGSNVDNARVALEQAACEVYRAYDCRDFARVDFIWD--GHKVMVMGLKTFPGL 300

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T  S+ P     AG    E+L  +V  A
Sbjct: 301 TETSLVPMAIEAAGLKRDEVLAHLVVGA 328


>gi|149183239|ref|ZP_01861683.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
 gi|148849035|gb|EDL63241.1| D-alanylalanine synthetase [Bacillus sp. SG-1]
          Length = 279

 Score =  133 bits (333), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 77/255 (30%), Positives = 133/255 (52%), Gaps = 10/255 (3%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+   +LHG  GEDG VQ +LELL +PY  +G+LASA  MDK+  K + +  G+P    
Sbjct: 12  FDVILPLLHGPNGEDGTVQGMLELLNLPYVGNGVLASAAGMDKVIMKNLYAQAGIPQVNY 71

Query: 111 ILVNRFTMDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   + T ++         +  +  P  +KP   GSS+GI   +  + + L   ++  ++
Sbjct: 72  VWYLKKTWENDPEAAYLKVEKELGYPCFVKPANLGSSVGISKAESREELILAFKEAFQFD 131

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +        IEL      +    V    +PK DFY Y+ KY   ++  ++PA+IP 
Sbjct: 132 RKIIIEQGVKAREIELGVLGNDEPECSVAGEILPKKDFYDYKAKYEDGDTALIIPAEIPA 191

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           D+Y++++R+A  + +A+ C G+ R+DF        ++  E+N  PG TP S+FP +  ++
Sbjct: 192 DVYEDMKRIAVDSFKALDCSGLVRADFFLTE-DGTIYMNEVNTMPGFTPFSMFPLLWKHS 250

Query: 282 GYSFRELLLWMVEDA 296
           G  + EL+  +V+ A
Sbjct: 251 GVEYPELIERLVKLA 265


>gi|111222491|ref|YP_713285.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
 gi|111150023|emb|CAJ61718.1| D-alanine--D-alanine ligase B [Frankia alni ACN14a]
          Length = 321

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 141/307 (45%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           +L GG+S EREVSL SG     AL   G +    DVD +    LA   PD+ F VLHG  
Sbjct: 9   ILAGGLSPEREVSLRSGGRLRDALTRIGVEAELADVDAATLPALAADPPDVVFPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +L+L ++PY  +   A  ++ DK  +K  V + GV    ++ + R       
Sbjct: 69  GEDGTIREVLDLYDLPYVGAAPPACRVAFDKATAKAAVGAAGVATPAAVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGS+ G+  +     +   L   S + + D  LIE+ V
Sbjct: 129 AAALIERIVARLGLPVVVKPRAGGSAFGVSRVDDAGGLAEAL--MSCFGYHDSALIERAV 186

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+T GV+               P +  Y Y  +Y++  +    PA++   + +    
Sbjct: 187 SGVEITVGVVEVGDGPVALPAVEIEPAAGVYDYAARYTAGATAFFTPARLDDAVLRAAAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+ +G R +SR+D + D       +LE+NV PGMT  S +P     AG     + 
Sbjct: 247 TAVTAHRVLGLRDLSRTDMIVDAA-GVAQFLEVNVAPGMTDTSTWPMGLHAAGLDLAVVC 305

Query: 290 LWMVEDA 296
             +   A
Sbjct: 306 RDLAARA 312


>gi|33336050|gb|AAQ12893.1| truncated D-alanine:D-alanine ligase [Enterococcus faecium]
          Length = 330

 Score =  133 bits (333), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 84/320 (26%), Positives = 138/320 (43%), Gaps = 47/320 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+GI   +  + +   L  +  ++    +        IE+      D    +    V
Sbjct: 183 MGSSVGITKAENREELQNALATAYQYDSRAIVEQGIEAREIEVAVLGNEDVRTTLPGEVV 242

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               FY YE KY +      +PA++P ++Y++ Q  A LA+  +G  G+SR DF      
Sbjct: 243 KDVAFYDYEAKYINNKIEMQIPAEVPEEVYQKAQEYAKLAYTMLGGSGLSRCDFFLT-NK 301

Query: 255 RKVFWLEINVQPGMTPVSIF 274
            ++F  E+N  PG T  S++
Sbjct: 302 NELFLNELNSMPGFTEFSMY 321


>gi|254966991|gb|ACT97530.1| putative D-alanyl-alanine synthetase A [uncultured organism]
          Length = 337

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 29/302 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG SSE +VS+ S +   S ++   + +  +++ +     L              
Sbjct: 5   IAIVAGGDSSEHDVSMRSAEGIYSFIDKDKYTLYIVELTKEKWEALLPDGSRAQIDRNDF 64

Query: 47  ------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                   +KPD A+  +HG  GE+G++Q   ELL IPY+   +L SA++  K    Q +
Sbjct: 65  SFSHDGQKVKPDFAYITIHGTPGENGILQGYFELLGIPYSTCDVLVSAMTFSKFTLNQYL 124

Query: 101 SSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GV V  S+           D    I  P  IKP   GSS G+  +K  + I   L  
Sbjct: 125 KGFGVRVAESMLVNKHHGISNEDVIEKIGLPCFIKPNASGSSFGVTKVKTAEQIQPAL-- 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--ELKYSSLNSTHV 214
             ++   D ++IE ++DGIEL  G        V            +       +   T +
Sbjct: 183 EKAFAESDDVMIEAFMDGIELANGCYKTKDKSVVFPITEVVSKNEFFDYNAKYNGEVTEI 242

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            PA++  ++   VQ+L    +  +GC+GI R D++      K+  LEIN  PGMT  S  
Sbjct: 243 TPARLSPELTDRVQKLTSAVYDILGCKGIVRVDYIITE-GEKINMLEINTTPGMTATSFI 301

Query: 275 PE 276
           P+
Sbjct: 302 PQ 303


>gi|331700385|ref|YP_004336624.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
 gi|326955074|gb|AEA28771.1| D-alanine--D-alanine ligase [Pseudonocardia dioxanivorans CB1190]
          Length = 315

 Score =  132 bits (332), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 91/285 (31%), Positives = 137/285 (48%), Gaps = 16/285 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG+S EREVSL SG+  A +L  AG  V + DVD S+   L   +PD     LHG
Sbjct: 6   VAVLAGGLSHEREVSLRSGRRVAGSLRAAGATVFEWDVDSSLVERLRVERPDAVVIALHG 65

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GE+G +QA+LELL +P+  S   A     DK  +K  +   G+     + +   T   
Sbjct: 66  GEGENGAIQAVLELLGVPFVGSRAPACRRVWDKPTAKSELRRAGLDTPDWVALPHATFRE 125

Query: 120 ---------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P ++KP +GGS+LG  V+   + +P   +  S   + D +L E+
Sbjct: 126 LGARSVLDAMVDKLGLPLMLKPDQGGSALGAQVVTTVEDLPS--VMVSCLAYSDTVLAER 183

Query: 171 YVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           ++DG E+   V+               P    Y Y  +Y+  ++    PA++  D+   V
Sbjct: 184 FIDGTEVAVAVVETDGEPQVLPLVEVEPLGGVYDYTARYTPGSTDFHCPARLAPDVLARV 243

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           Q  A  AH+ +G R +SR D + D     V  LE+NV PG+T  S
Sbjct: 244 QDAALSAHRLLGLRDLSRMDAVVDA-DGNVQILELNVSPGLTDTS 287


>gi|317130028|ref|YP_004096310.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315474976|gb|ADU31579.1| D-alanine/D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 404

 Score =  132 bits (332), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 76/365 (20%), Positives = 136/365 (37%), Gaps = 73/365 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50
           +AV+ GG+S E EVS+ S       ++++ +++  + + +            +   K   
Sbjct: 12  VAVIFGGMSVEHEVSVISALQAIQNMDESRYEIIPVYISKEGAWYTGDTLLDIEEYKNLK 71

Query: 51  ------------------------------------PDLAFNVLHGNFGEDGLVQAILEL 74
                                                D+AF ++HG F EDG++Q  LEL
Sbjct: 72  GLLAKSQRIQLLREGDNRVIINKEPKPKFGKAYINEIDVAFPIVHGTFAEDGVLQGYLEL 131

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           L +PY    +++S+  MDK+  K V    G+P+   +       +          +  + 
Sbjct: 132 LGLPYVGCDVVSSSTGMDKVIMKNVYRDSGLPILDYVWFYSTKWNEDQDELVKKVEGKLQ 191

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDL-------------LQSSSWNHGDQLLIEQYV 172
            P ++KP   GSS+GI        +   +                 +    +  ++  Y 
Sbjct: 192 YPVIVKPANLGSSVGISKAANVDELEEAVELASQFANKIVIEKMVQNMTEINCSVLGDYE 251

Query: 173 DGIELTCGVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                 C  +      ++                    ++  ++PA I  +  KE+Q LA
Sbjct: 252 AAEASVCEQVLGNDEILSYEDKYAGGGSKGGGASKGMESTNRIIPADISEEKTKEIQELA 311

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A Q +GC G+SR DFL D  +  VF  EIN  PG    S+   +    G  ++EL   
Sbjct: 312 VAAFQVLGCSGVSRIDFLIDNDTNNVFINEINTIPG----SLSFYLWEPTGKPYKELTND 367

Query: 292 MVEDA 296
           +++ A
Sbjct: 368 LIQLA 372


>gi|32490966|ref|NP_871220.1| hypothetical protein WGLp217 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|31340031|sp|Q8D2Y5|DDL_WIGBR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|25166172|dbj|BAC24363.1| ddlA [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 350

 Score =  132 bits (331), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 91/342 (26%), Positives = 164/342 (47%), Gaps = 52/342 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AVL GG S E E+SL S  +  +A++   + +  I V+++  + +              
Sbjct: 5   VAVLFGGESKEHEISLQSSISIINAIDKKKYNIILIGVEKNGKIGIRSINNYILFKYNIN 64

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                         LK D+ F++LHG+ GE+G  Q +   +  P
Sbjct: 65  YIKLAPAVSYLYIIPGKNNYQFYSLKNKKMLKIDVIFSILHGSNGENGAFQGLFNTIYTP 124

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-----PPYVIKPL 133
           +  S +L+S++ MDK  SK+++S+ G+ V PSI +       +          P  IKP 
Sbjct: 125 FVGSNVLSSSICMDKDISKRILSTFGISVVPSITLYYENYKKKINKIINNIKFPCCIKPS 184

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI- 192
             GSS G+ V     S+   +  +    +  ++LIE ++ G E+  GV+G+ ++  +   
Sbjct: 185 NQGSSFGVNVANDFISLKESIDVAF--LYSKKILIEPFIQGREIEVGVLGNRNVISSVCG 242

Query: 193 -AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
               K  FY Y+ KY S  +  ++PAKI  +I  +++++A LA  ++ C  ++R DF   
Sbjct: 243 EIKFKKIFYDYKEKYISKKTKIIIPAKISNEISNKIKKIAKLAFISLECSIMARVDFFLT 302

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             ++K+F  EIN  PG T  SI+P++ + +G  F+ L+  ++
Sbjct: 303 -KNKKIFLNEINTIPGFTKNSIYPKLWSKSGLDFKSLINKLI 343


>gi|223986473|ref|ZP_03636475.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
 gi|223961574|gb|EEF66084.1| hypothetical protein HOLDEFILI_03790 [Holdemania filiformis DSM
           12042]
          Length = 411

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 72/378 (19%), Positives = 135/378 (35%), Gaps = 84/378 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-----------------SVG 43
           + V+ GG S E EVS+ S      AL+   ++V  + + +                 ++ 
Sbjct: 5   VGVVFGGESVEHEVSVISALQGIEALDKERYEVIPLYISKQRDFYSSPALLEVENYKNLD 64

Query: 44  LVLAHLKP---------------------------DLAFNVLHGNFGEDGLVQAILELLE 76
            ++    P                           D+   ++HG  GEDG +Q  LE+L+
Sbjct: 65  ELIQKATPVVLVKKGKEVVVEPIKKGLFTKPIGTVDVIVPIMHGTNGEDGTIQGYLEMLK 124

Query: 77  IPYTHSGILASALSMDKMRSKQV--------VSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           IPY    ++ +A+  DK+  K +             +            +   H +  P 
Sbjct: 125 IPYAGCDVIGAAVGQDKVVMKHILQNSGLPVCPWFWLYGHEFAQKQEAVLAQVHELGYPV 184

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           V+KP   GSS+GI +   D+     +  +  ++    ++ +   +  E+ C V+G     
Sbjct: 185 VMKPACLGSSVGITIAHNDEEFIAGVEDARQYD-NKIVVEQMVKNLREINCSVLGSCFDC 243

Query: 189 V-------TEIAVPKSDFYSYELKYSSLNSTHVL-------------------PAKIPLD 222
                    +     S    Y  + S+   +                      PA +   
Sbjct: 244 QASVLEEVGKQDEIMSFKDKYLGQGSTKGGSKGGVKCGTKSGDGGMASAARIVPAPVDEA 303

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             ++++ LA    + +G  G+ R DF+ D  +  ++  EIN  PG    S+   +    G
Sbjct: 304 TTEKIRNLAIETFKVLGASGVCRIDFMMDGDTGMIYVNEINTIPG----SLAYYLWQPVG 359

Query: 283 YSFRELLLWMVEDASCLR 300
            SF +L+  +V  A   R
Sbjct: 360 VSFTQLMDTLVSQA-IDR 376


>gi|85858828|ref|YP_461030.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
 gi|85721919|gb|ABC76862.1| D-alanine--D-alanine ligase [Syntrophus aciditrophicus SB]
          Length = 352

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 95/339 (28%), Positives = 161/339 (47%), Gaps = 47/339 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + +++GG+SSEREVSL+SG+     L+   ++   + +D                  R +
Sbjct: 7   VGIILGGMSSEREVSLNSGRNVYDNLDAEFYEGVPVFMDAQGGLWILPWHLISQNTTRDI 66

Query: 43  GLVLA-----------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
              L              + D AF  LHG +G+DG +Q +LELL IPYT  G++ASAL M
Sbjct: 67  TERLKGEARRIAYEDLKKEIDFAFISLHGKYGDDGCIQGLLELLRIPYTGPGVMASALGM 126

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGII 142
           DK   ++++ + GV V  S+LV          I           P   KP++ GSS+G+ 
Sbjct: 127 DKHLQQKILRAAGVAVPESLLVREEEWRQDSQIVKDRVKEFPGYPCFTKPIREGSSVGVT 186

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDF 199
           V++ +  +   +  +  W     +L+E+Y++G E +C V+ +             P+S+F
Sbjct: 187 VVRDEADLERGMEDALKW--DRAVLVEEYLEGREFSCIVLEEEGQFHPLELTEIHPQSEF 244

Query: 200 YSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD-FLFDPLSRKV 257
           ++Y+ KY          P  IP D+ ++++     A +A+G R   R D F+ +    ++
Sbjct: 245 FTYDDKYMPGRCRKFTPPKTIPPDVTEQIKAEVIRAFKALGFRSYGRIDGFILN--DGRI 302

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              + N   GM P S F E AA AG     ++  ++E+A
Sbjct: 303 LITDPNSSSGMAPSSFFFEQAACAGMLPSMIITTLIENA 341


>gi|160934064|ref|ZP_02081451.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
 gi|156866737|gb|EDO60109.1| hypothetical protein CLOLEP_02927 [Clostridium leptum DSM 753]
          Length = 342

 Score =  132 bits (331), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 76/335 (22%), Positives = 140/335 (41%), Gaps = 58/335 (17%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------------------- 48
            S      A++ + ++V+ + + +     L                              
Sbjct: 1   MSATTVLRAIDKSRYEVTPVGIKKDGSWWLYPGDIGLILDGRWESCPDNLPAFLVPDASV 60

Query: 49  --------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                          K D     LHG  GEDG +Q +L+L  IP+    + +SA  MDK+
Sbjct: 61  GGLLIRDSDHSDTVKKIDCVIPALHGKNGEDGTIQGLLQLAGIPFVGCDMTSSAACMDKV 120

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQH----------LISPPYVIKPLKGGSSLGIIVI 144
            +  ++   G+P      +  +   S            L S P  +KP   GSS+G+   
Sbjct: 121 ITNVMLEQAGIPQARFTWLYAYEFQSAPDEAVLKIEKDLGSYPVFVKPANAGSSVGVSKA 180

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---DVTEIAVPKSDFYS 201
           +  + +   + +++      ++LIE+ + G E+ C V+G+             P ++FY 
Sbjct: 181 ENREELRAAIAKAA--KEDGKILIEENIVGQEVECAVLGNEDDLLASTVGEIAPSNEFYD 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           YE KY S  S   +PA +   + + ++  A  A+Q +GC G++R DF       +V   E
Sbjct: 239 YEAKYLSGTSGLYIPAHLESGVIETIRSTAQKAYQVLGCSGLARVDFFV-RNGSEVLLNE 297

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG T +S++P++  + G S +EL+  +++ A
Sbjct: 298 LNTLPGFTSISMYPKLMEHEGLSNQELIHRLIQLA 332


>gi|288920000|ref|ZP_06414320.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
 gi|288348564|gb|EFC82821.1| D-alanine--D-alanine ligase [Frankia sp. EUN1f]
          Length = 319

 Score =  131 bits (330), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 97/311 (31%), Positives = 145/311 (46%), Gaps = 17/311 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSLSSG     AL   G      DVD +    LA   P +   VLHG  
Sbjct: 9   VLAGGLSVEREVSLSSGSRLHEALSRIGVDTELRDVDDATLTALAGDPPAVVIPVLHGTS 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG ++ +L+L  +PY  +   A   + DK  +K  V++ G+    ++ + R       
Sbjct: 69  GEDGTIREVLDLYGLPYVGAEPAACRSAFDKAAAKATVTASGISTPRAVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P V+KP  GGSS G+  +++   +   L   + + + D  LIEQ V
Sbjct: 129 AAQLIDRVVGRLGLPLVVKPRAGGSSFGVGRVEEAGQLAEAL--MACFGYHDWALIEQAV 186

Query: 173 DGIELTCGVMGDASLD---VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+  GV+   S           P +  Y Y  +Y+   +T + PA++P  +      
Sbjct: 187 TGVEIAVGVVDTGSGPIALPAVEIEPVTGPYDYAARYTPGATTFITPARLPAAVLDAAAA 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AHQA+G R +SR+D + D       +LE+NV PGMT  S +P     AG  F  + 
Sbjct: 247 AAVAAHQALGLRDLSRTDLIVDAA-GVPQFLEVNVAPGMTDTSTWPMCLEAAGLEFGVVC 305

Query: 290 LWMVEDASCLR 300
             +   A+  R
Sbjct: 306 RDL-AAAAQNR 315


>gi|325971616|ref|YP_004247807.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324026854|gb|ADY13613.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 360

 Score =  131 bits (330), Expect = 9e-29,   Method: Composition-based stats.
 Identities = 79/343 (23%), Positives = 134/343 (39%), Gaps = 49/343 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S+E EVS++S      AL+ AG++V  I +       L              
Sbjct: 3   IALVYGGRSTEHEVSIASALTVHRALKQAGYRVLLIAIALDGRWYLQPNLLSKSIDATIP 62

Query: 47  -------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                        A L  D  F   HG  GEDG +Q +  L  +P      ++SAL M K
Sbjct: 63  IHAVPGLGLYVQDAKLDIDAVFATTHGYGGEDGNLQGLCMLCRLPLCGCDTVSSALGMHK 122

Query: 94  MRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             + ++     +P  P+          +        ++  + P   +KP   GSS+G+  
Sbjct: 123 HLASELFMQALIPTVPTLLLDKNAVQQVEYTTLLERARSTLGPDLFVKPENSGSSVGVSA 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---------IELTCGVMGDASLDVTEIAV 194
           +K   +  L      +  + +++LI+  +                G++      V + A 
Sbjct: 183 LKDCDAKALQQAVELARRYSERVLIQLLIHPLQELETAVLETRDKGLVVAGPGLVIDPAK 242

Query: 195 PKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
               F SYE KY     +   +P+ +       ++  A  A  AI   G +R DF     
Sbjct: 243 ETVGFLSYEHKYGKVDTAHIRIPSGLDDTTETIIKNYARKAFLAIKGDGYARIDFFVSE- 301

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +++  EIN  PG+T  S +P + A  GY    +   +VE+A
Sbjct: 302 -NRIYLNEINTSPGLTDTSHYPALLASVGYDLSSVCKHLVENA 343


>gi|218134983|ref|ZP_03463787.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990368|gb|EEC56379.1| hypothetical protein BACPEC_02888 [Bacteroides pectinophilus ATCC
           43243]
          Length = 398

 Score =  131 bits (330), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 81/362 (22%), Positives = 144/362 (39%), Gaps = 71/362 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A++ GG S E EVS+ SG     +++   + V  + + ++  + +              
Sbjct: 10  VAMMFGGKSVEHEVSVISGIQAYMSMDTDKYDVIPVYMTKNNEMYIGDSIGDIESYKNID 69

Query: 47  -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                            +  D+AF V+HG   EDG  Q  L+ +
Sbjct: 70  ELLKKSQRVIMINEDGRVKLVQYPVKKLGKNVEVGIDVAFPVVHGTNVEDGGFQGYLKTM 129

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPV--------CPSILVNRFTMDSQHLISPP 127
            IP+    + ASA+ MDK  +K V+    VPV             +     D +++   P
Sbjct: 130 GIPFVGCDVTASAIGMDKYITKLVLKESNVPVLDARLYTLSDYADMESMMNDIENVFGYP 189

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            ++KP+  GSS+GI V K    +   +  +  +     L+     +  E+ C V+GD + 
Sbjct: 190 VIVKPVNLGSSVGISVAKSRVELANSVDDAFRYAT-KVLVEHAITNLREINCSVLGDEND 248

Query: 188 DVTEIAVPKSDFYSYELKYSSLNST-------------HVLPAKIPLDIYKEVQRLAFLA 234
            +                     S                +PA++  +  +EV+ LA  +
Sbjct: 249 AIASECEEPLHTKDILSYEDKYVSNAKGSGSKGMASVSRRIPAELTPEKREEVRELAVRS 308

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+GC G+SR DF+ D  + K+++ EIN  PG    S+   +    G  ++ELL  M++
Sbjct: 309 FKALGCNGVSRIDFMIDADTDKLYFNEINTIPG----SLAFYLWEPVGVPYKELLDRMIQ 364

Query: 295 DA 296
            A
Sbjct: 365 LA 366


>gi|29840620|ref|NP_829726.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
 gi|41017332|sp|Q821S4|MUDD_CHLCV RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|29834970|gb|AAP05604.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila caviae GPIC]
          Length = 811

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 71/332 (21%), Positives = 121/332 (36%), Gaps = 40/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S E +VSL S +     L    + V    ++R                    
Sbjct: 454 VGVVCGGQSCEHDVSLLSARNVVQYLSPQHYDVQYFVINRQGLWSQVANLDAGSDYNSKN 513

Query: 45  ------VLAH--LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                  +A      D    +LHG FGEDG +Q  LE+   PY    +L SA+SMDK+ +
Sbjct: 514 YHVLSSKIAEALANLDFVLPILHGPFGEDGTLQGFLEIANKPYGGPSLLFSAISMDKIMT 573

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKD 147
           K++ +S GVPV P   +   T      +           P  +K    GSS+G+  +  +
Sbjct: 574 KRLAASVGVPVVPYQPLTLPTWKRTPELCMRRILETFTFPMFVKTAHLGSSIGVFEVHNE 633

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   + ++  ++    +   +          +    S         +     +     
Sbjct: 634 TELKAKISEAFLYDTDVFIEESRLGSREIEVSCLGDACSCYYISEPHERRGSKGFIGYEE 693

Query: 208 SLNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    A I  D+         V+ L    ++ I  +G  R DF  D      +  E
Sbjct: 694 KYGFNGKSSATIQYDLNLSEESKTRVKELTERVYRVIQGKGSCRIDFFLDREGN-FWLSE 752

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +N  PGMT  S F    A  G++F +++  ++
Sbjct: 753 MNPIPGMTKSSPFLHDFARLGWTFEQIVHQLI 784


>gi|229513248|ref|ZP_04402713.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
 gi|229349658|gb|EEO14613.1| D-alanine--D-alanine ligase [Vibrio cholerae TMA 21]
          Length = 334

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 128/322 (39%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|261212348|ref|ZP_05926633.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
 gi|260838279|gb|EEX64935.1| D-alanine--D-alanine ligase [Vibrio sp. RC341]
          Length = 335

 Score =  131 bits (328), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       L+    F+V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLQLTPEFEVIRVEMKKEGWFSEQGELVYLDTNSATLN 67

Query: 48  HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             +     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GERFSSPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  ++ I   +  +
Sbjct: 128 DIPNTPYLFLTQNTSDSIKKAQQAFKEWGSIFVKAARQGSSVGCYKVTTEEQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SLNS 211
                 +Q+L+E+ V   EL                     P+  FYSYE KYS  S + 
Sbjct: 188 F--GFSEQVLVEKAVKPRELEVAAYEMNGQLHISKPGEIIAPEDAFYSYEEKYSASSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMTP+
Sbjct: 246 TVIEADNLTNEQRELIQQCAERVFIHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F   L   V
Sbjct: 305 SMFPKMLEHNGHRFSAFLAECV 326


>gi|262189715|ref|ZP_06048079.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
 gi|262034402|gb|EEY52778.1| D-alanine--D-alanine ligase [Vibrio cholerae CT 5369-93]
          Length = 334

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|268610478|ref|ZP_06144205.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Ruminococcus flavefaciens FD-1]
          Length = 401

 Score =  131 bits (328), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 76/368 (20%), Positives = 133/368 (36%), Gaps = 77/368 (20%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------- 41
           AVL GG S E EVS+ S     +++    + +  + + +                     
Sbjct: 6   AVLFGGRSVEHEVSVISAVQAMASINKEKYNIIPVYMTKKSEFYTSEKMLDINSFKDIPA 65

Query: 42  -------------------VGLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                              V   +           D+AF ++HG   EDG +Q  L+ L+
Sbjct: 66  LLAESTECVFVRSEGKVQLVRQKIKKFGSNLISDVDIAFPIVHGTNVEDGALQGYLQTLD 125

Query: 77  IPYTHSGILASALSMDKMRS--------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
           +PY    +LASA+ MDK             V+  C         ++      +     P 
Sbjct: 126 LPYVGCDVLASAVGMDKYVMKILLKEAGFPVLDCCRFSSYEIDDMDNMIAQVEAKFGYPV 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-------------NHGDQLLIEQYVDGI 175
           ++KP+  GSS+GI   K   S+   + ++  +                +  ++    +  
Sbjct: 186 IVKPINLGSSVGISKAKDRDSLINSIEEAFQFADRILVEPAVVQLKEINCSVVGDSEEAE 245

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-------PAKIPLDIYKEVQ 228
              C     AS D       K      +    S   +  +       PA+I  +  + ++
Sbjct: 246 ASVCEEPVQASSDEILSYDQKYKGDGGKNGSKSGGGSKGMATLKRKIPAEITPEQDEFIR 305

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           R A  A + +GC G++R DF+ D  + KV+  EIN  PG    S+   +    G  + EL
Sbjct: 306 RTAVDAFRYLGCNGVTRIDFMIDMATDKVYINEINTIPG----SLAFYLWEPKGVKYPEL 361

Query: 289 LLWMVEDA 296
           L  +++ A
Sbjct: 362 LERLIQLA 369


>gi|153827363|ref|ZP_01980030.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297580376|ref|ZP_06942303.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
 gi|149738732|gb|EDM53074.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-2]
 gi|297536022|gb|EFH74856.1| D-alanine-D-alanine ligase [Vibrio cholerae RC385]
          Length = 334

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|33242268|ref|NP_877209.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
 gi|33236779|gb|AAP98866.1| UDP-N-acetylmuramate--alanine ligase [Chlamydophila pneumoniae
           TW-183]
          Length = 809

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 131/334 (39%), Gaps = 39/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY       +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSPSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +           P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++    +   +          +   +S         +     +      
Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693

Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                +  AKI  D+         V+ LA   ++A+  +G +R DF  D      +  E+
Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|237807008|ref|YP_002891448.1| D-alanyl-alanine synthetase A [Tolumonas auensis DSM 9187]
 gi|259645175|sp|C4L8J2|DDL_TOLAT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|237499269|gb|ACQ91862.1| D-alanine/D-alanine ligase [Tolumonas auensis DSM 9187]
          Length = 330

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 33/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA------GFKVSQ------------IDVDRSVGL 44
           +L GG  SE E+SL S     S L++         ++              + +DR +  
Sbjct: 8   LLCGGGGSEHEISLLSANYLESQLKELAEVSVTRVELFPDHWQTNDGRSCHLGMDRQLHF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q++LEL+ +PY   G   S L  +K+ +K  +S+  
Sbjct: 68  ANEAKPVDFVVPCIHGFPGETGDIQSMLELIGLPYLGCGSEGSKLCFNKVSTKLWLSALD 127

Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P +              +         +K    GSS+G   +     +   +  + 
Sbjct: 128 IPNTPFLFLSDNNEAAHAQAHTAFRNWGAVFVKAASQGSSVGCYKVTDAAKLSEAVNAAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASL----DVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + DQ+L+E+ V   EL   V             EIA P   FYSYE KYSS +++  
Sbjct: 188 --GYSDQVLVEKAVRPRELEVAVYRYNDQLVATRPGEIATPSDSFYSYEEKYSSGSNSTT 245

Query: 215 LPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                         ++  A  A   +G + +SR DF       ++   EIN  PGMTP+S
Sbjct: 246 YLEAPGLSDAQISTIREYALKAFTQLGLKDLSRIDFFLTE-DNEILLNEINTFPGMTPIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVED 295
           +FP++  + G +F++ L  ++  
Sbjct: 305 MFPKLLEHHGDNFKQFLEGIIRS 327


>gi|268316561|ref|YP_003290280.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262334095|gb|ACY47892.1| D-alanine/D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 414

 Score =  130 bits (327), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 80/375 (21%), Positives = 137/375 (36%), Gaps = 83/375 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------------LA 47
           + V+ GG+S E EVS+ +G   A+AL+   +++  + + +                  L 
Sbjct: 10  VGVVFGGVSPEHEVSVITGLQAAAALDRTRYEIVPLYIAKDGSWYTGPVLLELEAYQDLD 69

Query: 48  HLK-----------------------------------PDLAFNVLHGNFGEDGLVQAIL 72
            L+                                    D+    LHG  GE+G VQ + 
Sbjct: 70  ALRRAAIPVRFDPAVHGRMLLVEATPRRWPWRRPRRYLVDVVLLALHGGEGENGGVQGLC 129

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS------- 125
           E L +PYT SG+L SAL MDK+ SK +    G+PV   +         +           
Sbjct: 130 ETLNVPYTGSGVLGSALGMDKVLSKLLCREQGIPVVDFLWFREADWAGREEEWLDRLEAE 189

Query: 126 --PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGI 175
              P V+KP + GSS+GI  ++  Q++   + ++  ++          +   I   V G 
Sbjct: 190 LGYPMVVKPARLGSSIGIQRVEDRQALDAAIEEAFRYDEKVVVERAIRNLREINCAVLGD 249

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYE--------------LKYSSLNSTHVLPAKIPL 221
                         ++ +   +    Y                     +   ++PA +  
Sbjct: 250 PSEARPSMLEEPVRSDPSKLLTFQDKYMRGGGKAGRRAGKQQAPQGMASLDRIIPAPLDE 309

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              + VQ +A    Q   C G++R DFL D  + +V++ EIN  PG    S    +    
Sbjct: 310 AQTRAVQEMAVRVFQLFECAGVARIDFLLDDDTGQVYFNEINTIPG----SFSFYLWEPV 365

Query: 282 GYSFRELLLWMVEDA 296
           G  F  L+  ++  A
Sbjct: 366 GVPFDALMDELIRLA 380


>gi|62185432|ref|YP_220217.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
 gi|62148499|emb|CAH64270.1| putative bifunctional cell division-related protein (includes:
           UDP-N-acetylmuramate--L-alanine ligase and
           D-alanine--D-alanine ligase [Chlamydophila abortus
           S26/3]
          Length = 810

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 60/331 (18%), Positives = 115/331 (34%), Gaps = 39/331 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + V+ GG S E ++S+ S K     L    + +    +DR                    
Sbjct: 454 VGVVCGGKSCEHDISVLSAKNVVRYLSPEYYDIQYFIIDRQGLWSKVSTIECEDYEGKGY 513

Query: 45  -------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                    A +  D    +LHG FGEDG +Q  LE++  PY    +L S+++MDK+ +K
Sbjct: 514 HVLSSEITEALIHLDFILPILHGPFGEDGTLQGFLEIINQPYAGPSLLFSSVTMDKIMTK 573

Query: 98  Q---------VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +         V                         + P  +K    GSS+G+  +  ++
Sbjct: 574 RLAASVGVPVVPYQPLTLHAWKRTPELCMHKIAEAFTFPMFVKTAHLGSSIGVFEVHNEE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++    +   +          +   +S         +     +      
Sbjct: 634 ELKAKISEAFLYDTDIFIEESRLGSREIEVSCLGDSSSCYYISEPHERCGEKRFISYEDK 693

Query: 209 LNSTHVLPAKIPL------DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   A+I        ++   V+ L    ++ I  +G  R DF  D      +  E+
Sbjct: 694 YGLNGRTSAQIQYDLDLSEELKIRVKELTERMYRVIQGQGSCRVDFFLDDE-GNFWLSEM 752

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F       G++F +++  ++
Sbjct: 753 NPIPGMTKASPFLHDFVRLGWTFEQVIHQLI 783


>gi|229523064|ref|ZP_04412476.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
 gi|229339914|gb|EEO04924.1| D-alanine--D-alanine ligase [Vibrio cholerae TM 11079-80]
          Length = 334

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 129/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 V--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +     + +Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKQKELIQTYAERVFIHMNLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|254285190|ref|ZP_04960156.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
 gi|150425193|gb|EDN16970.1| D-alanine--D-alanine ligase [Vibrio cholerae AM-19226]
          Length = 334

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 130/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+LIEQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLIEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|58424569|gb|AAW73606.1| D-alanine-D-alanine ligase A [Xanthomonas oryzae pv. oryzae
           KACC10331]
          Length = 347

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 75/332 (22%), Positives = 138/332 (41%), Gaps = 55/332 (16%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAH---------------------------- 48
            S +    AL+   F+   I +D+     +                              
Sbjct: 2   QSARNILDALDPQRFEPVLIGIDKQGQWHVNDPDSFLLHADDPARIALHRSGRGVALLPG 61

Query: 49  ---------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                           + D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK
Sbjct: 62  AQQQQLRPIQPEQALAQIDVVFPIVHGTLGEDGSLQGLLRMANLPFVGSGVLGSAVAMDK 121

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKD 147
             +K+V+    + V P +  +R T            +  P  +KP   GSS+G  V +  
Sbjct: 122 DMAKRVLRDARLAVAPFVCFDRHTAAHADVDTLIAQLGLPLFVKPANQGSSVG--VSQVR 179

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            +       + +  +  ++L+E  V G E+ C V+G+A    +           Y     
Sbjct: 180 TADAFAAALALALAYDHKVLVEAAVAGREIECAVLGNAVPHASVCGEVVVHDAFYSYATK 239

Query: 208 SLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++      V+PA I     + +Q++A  A+QA+GC G++R D        ++   E+N 
Sbjct: 240 YISEHGAEIVIPADIDAQTQQRIQQIAVQAYQALGCAGMARVDVFLCA-DGRIVINEVNT 298

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P++   +G  +R L+  ++E A
Sbjct: 299 LPGFTRISMYPKLWQASGLDYRGLITRLIELA 330


>gi|229526882|ref|ZP_04416286.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
 gi|229527573|ref|ZP_04416964.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229333935|gb|EEN99420.1| D-alanine--D-alanine ligase [Vibrio cholerae 12129(1)]
 gi|229337040|gb|EEO02058.1| D-alanine--D-alanine ligase [Vibrio cholerae bv. albensis VL426]
          Length = 334

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|121725889|ref|ZP_01679189.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
 gi|121631654|gb|EAX64022.1| D-alanine--D-alanine ligase [Vibrio cholerae V52]
          Length = 334

 Score =  130 bits (326), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|160879787|ref|YP_001558755.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           phytofermentans ISDg]
 gi|160428453|gb|ABX42016.1| D-alanine--D-alanine ligase domain protein [Clostridium
           phytofermentans ISDg]
          Length = 347

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/300 (25%), Positives = 134/300 (44%), Gaps = 15/300 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S+ +  A  +ALE     +  ++ D  +   L     D+ FN+  G    G +  
Sbjct: 40  AEYD-SIDTVLAIKNALECDNCHIELMEADTDLPKRLKETPVDIVFNIAEGLKGRGREAE 98

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+L +  IP+T S      L++DK   K+V+S+  +      +  +         S P
Sbjct: 99  VPAVLNMFNIPFTGSDETTLCLALDKALCKRVLSTYRIRTPKYRVFTKDDNRLNTNFSFP 158

Query: 128 YVIKPLKGGSSLGI--IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            ++KP   GSS GI  I I  ++     L+  +   +G  +L+E+Y+DG E T GV+G+ 
Sbjct: 159 CIVKPNAEGSSKGISDICIATNKEELKTLVTDNIKAYGQDMLVEEYIDGREFTVGVLGNG 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLN--------STHVLPAKIPLDIYKEVQRLAFLAHQA 237
                   +        +    S N          +  P+K+  DI +E+  +A    + 
Sbjct: 219 DDVHVFSPMEIIYLKKNKFNIYSFNVKQDYKKLIRYECPSKLDPDIEEEMVFMAKKIFKV 278

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           + C   SR DF  +    K +++EIN  PG+ P  S FP +A + G  +  L+  ++ +A
Sbjct: 279 LSCHDFSRIDFRLNSE-GKPYFIEINPLPGLAPGYSDFPMLAEFCGMDYVTLVRSILRNA 337


>gi|262164168|ref|ZP_06031906.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
 gi|262026548|gb|EEY45215.1| D-alanine--D-alanine ligase [Vibrio mimicus VM223]
          Length = 334

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 135/322 (41%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67

Query: 45  -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  ++ I       
Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--AIE 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
           +++   +Q+L+E+ V   EL                     P+  FYSYE KY  +S + 
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T +    +  +  + +Q+ A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|254226469|ref|ZP_04920055.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
 gi|125621031|gb|EAZ49379.1| D-alanine--D-alanine ligase [Vibrio cholerae V51]
          Length = 334

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 87/322 (27%), Positives = 131/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +   L               L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWLSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|147671582|ref|YP_001215354.1| D-alanyl-alanine synthetase A [Vibrio cholerae O395]
 gi|262168425|ref|ZP_06036121.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
 gi|189083064|sp|A5F083|DDL_VIBC3 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|146313965|gb|ABQ18505.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|227015368|gb|ACP11577.1| D-alanine--D-alanine ligase [Vibrio cholerae O395]
 gi|262022954|gb|EEY41659.1| D-alanine--D-alanine ligase [Vibrio cholerae RC27]
          Length = 329

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 130/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|297170214|gb|ADI21252.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured myxobacterium HF0010_08B07]
          Length = 297

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 60/300 (20%), Positives = 121/300 (40%), Gaps = 11/300 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + +L GG S E  +S  S +     ++ A F     D+       +      L F  +HG
Sbjct: 4   VIILYGGDSVESGISQQSAEGIMENIDQAKFSARMQDIKNFDFKSVDKET--LIFIAVHG 61

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG  Q +L+  +I +T S  +++    +K+ SK ++    +P     ++ +    +
Sbjct: 62  KDGEDGTTQKLLKKRKIKFTGSDEISTRKCWNKISSKTLMVENAIPTPEFKVIKKNQKLN 121

Query: 121 QHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                      + +KP   GSS G+  +   +++   ++ +  ++    +          
Sbjct: 122 LEDQFFSKNKSFFVKPNSNGSSFGVSRVDHIKNLEGAIITARKYSEDVIIERAYNSAEYT 181

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +                  +     Y+ +   ++        +   I  E++++A  A  
Sbjct: 182 VGILKGEALQPLEIIAEDSEGF---YDYEAKYISKGTKKVEVVDKKIKDELKKIALKAFY 238

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             GC+   R DF++D        LEIN  PG T  S+FP  A  +G +++EL+  ++ED+
Sbjct: 239 KHGCQTWGRVDFVYDGKDLG--VLEINTVPGFTEKSLFPLAAKLSGINYQELITNIIEDS 296


>gi|89897960|ref|YP_515070.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
 gi|89331332|dbj|BAE80925.1| MurC/ddl bifunctional enzyme [Chlamydophila felis Fe/C-56]
          Length = 811

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 74/332 (22%), Positives = 126/332 (37%), Gaps = 40/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------------------DVDRSV 42
           + V+ GG S E +VSL S K     L    + V                     D D+  
Sbjct: 454 VGVVCGGQSCEHKVSLLSAKNIIQYLASEYYDVQYFVINRQGLWSKVTAIDAEHDYDKEG 513

Query: 43  GLVLAHL------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             VL+          D+   +LHG FGEDG +Q  LE+++ PY    +L SA+SMDK+ +
Sbjct: 514 YHVLSSEIAESLANVDVILPILHGPFGEDGTLQGFLEIIDKPYGGPSLLFSAISMDKVMT 573

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKD 147
           K++ +S GVPV P   +          +           P  +K    GSS+G+  +  +
Sbjct: 574 KRLAASIGVPVVPYQPLTLHAWKRTPDLCMRRILETFTFPMFVKAAHLGSSIGVFEVHNE 633

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +   + ++   +    +   +          +   +S         +     +     
Sbjct: 634 EELKSKISEAFQCDTDIFIEESRLGSREIEVSCLGDASSSYYISEPHERCGEKRFISYEE 693

Query: 208 SLNSTHVLPAKIPLDIYK------EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                    AKI  D+         V+ L    ++ I  +G  R DF  D    + +  E
Sbjct: 694 KYGFNGKSSAKIQYDLNFSKEAKARVKELTERIYRVIQGKGSCRIDFFLDNE-GEFWLSE 752

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           IN  PGMT  S F       G++F +++  ++
Sbjct: 753 INPIPGMTESSPFLHDFVRVGWTFEQIMHQLI 784


>gi|326330648|ref|ZP_08196952.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
 gi|325951489|gb|EGD43525.1| D-alanine--D-alanine ligase [Nocardioidaceae bacterium Broad-1]
          Length = 318

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 91/313 (29%), Positives = 153/313 (48%), Gaps = 18/313 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AV+ GG+S ER+VSL+SG+     L   G +V+  D DR++   L   K  +A   LHG
Sbjct: 10  VAVIAGGLSHERDVSLASGRNLVRELSALGVEVAAYDFDRALLHNLERDKAVVALPALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-------- 112
            FGEDG +Q +LEL+ IPY  +   +  ++ DK  +++++   G+PV  S+         
Sbjct: 70  QFGEDGEIQTLLELIGIPYVGTVSTSCRVAFDKAAARELLRRGGIPVPDSVSLSSTTFRD 129

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +    V+KP +GGS+LG+  +    ++P  L    ++ + D+ LIE+
Sbjct: 130 VGAPVLMEHVISRMGERVVVKPSRGGSALGVTGVDGLSALPAAL--VKTYAYCDEALIER 187

Query: 171 YVDGIELTCGVMGDA----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  GI+++  V         L    I   K   + +  +Y++       P  +P  +  E
Sbjct: 188 FYAGIDVSVVVHETDEGTKPLTPIAIDFSKGHEFDFAARYTAEFVGFGRP-DLPDALLTE 246

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH+ +G R ISR+DF+  P       LE+ + PG T  S+FP  A + G S  
Sbjct: 247 LGETAVRAHELLGMRDISRTDFMVTP-DGGFVVLEVAITPGATETSVFPFAAKHDGTSMG 305

Query: 287 ELLLWMVEDASCL 299
           E+ L +++ A   
Sbjct: 306 EVTLALLKRALAR 318


>gi|15618814|ref|NP_225100.1| muramate-Ala ligase & D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           CWL029]
 gi|15836438|ref|NP_300962.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
 gi|16752131|ref|NP_445498.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|6919933|sp|Q9Z701|MUDD_CHLPN RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
 gi|4377225|gb|AAD19043.1| Muramate-Ala Ligase/D-Ala-D-Ala Ligase [Chlamydophila pneumoniae
           CWL029]
 gi|7189873|gb|AAF38741.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae AR39]
 gi|8979279|dbj|BAA99113.1| muramate-Ala ligase/D-Ala-D-Ala ligase [Chlamydophila pneumoniae
           J138]
          Length = 809

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 39/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +           P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++    +   +          +   +S         +     +      
Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693

Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                +  AKI  D+         V+ LA   ++A+  +G +R DF  D      +  E+
Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQIVDHFIIDA 786


>gi|220921310|ref|YP_002496611.1| D-alanyl-alanine synthetase A [Methylobacterium nodulans ORS 2060]
 gi|219945916|gb|ACL56308.1| D-alanine/D-alanine ligase [Methylobacterium nodulans ORS 2060]
          Length = 378

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 75/346 (21%), Positives = 135/346 (39%), Gaps = 55/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-VGLVL------------- 46
           +A+L GG S+E EVS+ S    A AL+   + V+ I +D+      L             
Sbjct: 5   VALLFGGRSAEHEVSILSAGNVARALDPDRYAVTPIAIDKETGAWRLCPALAAGEAPAMG 64

Query: 47  ------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                                        D+   VLHG  GEDG VQ  L+L  +PY  S
Sbjct: 65  QDGPLVAFLPGGGGRLAILSDAAALSEPFDVVVPVLHGPNGEDGTVQGALDLAGVPYVGS 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVC------PSILVNRFTMDSQHLISPPYVIKPLKGG 136
           G++ SA +MDK  +K+++   G+P+        +     +   +  L S    +KP   G
Sbjct: 125 GVVGSAAAMDKDVAKRLMRDAGLPMIVPFLAATARRPVSYADAAAALESRTLFVKPANMG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+  +            +    + +++LIE+ V         + +       ++ P 
Sbjct: 185 SSVGVSRVTDPAQFDRAAAHAF--GYDEKILIERAVPQAREIECAVLETPEGELRVSPPG 242

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR--------GISRSDF 248
               +    +   ++ ++ P    L I   +        + +  R        G++R D 
Sbjct: 243 EIAPAAAHGFYGYDAKYLDPDGAALLIPAALDAARADRMRELAARAFAALACAGLARVDL 302

Query: 249 LFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             DP     +F  E+N  PG T +S++P++   AG +   L+  ++
Sbjct: 303 FLDPADPAGIFVNEVNTLPGFTAISMYPKLWDAAGLAPPALMDALI 348


>gi|153800674|ref|ZP_01955260.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
 gi|124123809|gb|EAY42552.1| D-alanine--D-alanine ligase [Vibrio cholerae MZO-3]
          Length = 334

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 83/322 (25%), Positives = 128/322 (39%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + +                    +K  + GSS+G   +  +  I   +  +
Sbjct: 128 GIPNTPYLFLTQNAPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 V--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +     + +Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKQKELIQTYAEHVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|15601331|ref|NP_232962.1| D-alanyl-alanine synthetase A [Vibrio cholerae O1 biovar eltor str.
           N16961]
 gi|153823278|ref|ZP_01975945.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227812140|ref|YP_002812150.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229506258|ref|ZP_04395767.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229509883|ref|ZP_04399363.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229605798|ref|YP_002876502.1| D-alanyl-alanine synthetase A [Vibrio cholerae MJ-1236]
 gi|254849732|ref|ZP_05239082.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255746651|ref|ZP_05420598.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|298499384|ref|ZP_07009190.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
 gi|22095568|sp|Q9KM17|DDL_VIBCH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|254767746|sp|C3LVI8|DDL_VIBCM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|9657982|gb|AAF96474.1| D-alanine--D-alanine ligase [Vibrio cholerae O1 biovar El Tor str.
           N16961]
 gi|126519203|gb|EAZ76426.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|227011282|gb|ACP07493.1| D-alanine--D-alanine ligase [Vibrio cholerae M66-2]
 gi|229352328|gb|EEO17268.1| D-alanine--D-alanine ligase [Vibrio cholerae B33]
 gi|229356609|gb|EEO21527.1| D-alanine--D-alanine ligase [Vibrio cholerae BX 330286]
 gi|229372284|gb|ACQ62706.1| D-alanine--D-alanine ligase [Vibrio cholerae MJ-1236]
 gi|254845437|gb|EET23851.1| D-alanyl-alanine synthetase A [Vibrio cholerae MO10]
 gi|255736405|gb|EET91803.1| D-alanine--D-alanine ligase [Vibrio cholera CIRS 101]
 gi|297541365|gb|EFH77416.1| D-alanine-D-alanine ligase [Vibrio cholerae MAK 757]
          Length = 334

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 86/322 (26%), Positives = 131/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L+  V
Sbjct: 305 SMFPKMLEHNGHRFSEFLVQCV 326


>gi|269302694|gb|ACZ32794.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydophila pneumoniae LPCoLN]
          Length = 809

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 72/334 (21%), Positives = 132/334 (39%), Gaps = 39/334 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E ++SL S +  +  +    + VS   ++R                    
Sbjct: 454 IGLVCGGKSCEHDISLLSAQHVSKYISPEFYDVSYFIINRQGLWRTGKDFPHLIEETQGD 513

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                       K D  F VLHG FGEDG +Q   E+L  PY    +  +A +MDK+ +K
Sbjct: 514 SPLSSEIASALAKVDCLFPVLHGPFGEDGTIQGFFEILGKPYAGPSLSLAATAMDKLLTK 573

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ S+ GVPV P   +N         +           P ++K    GSS+GI +++  +
Sbjct: 574 RIASAVGVPVVPYQPLNLCFWKRNPELCIQNLIETFSFPMIVKTAHLGSSIGIFLVRDKE 633

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++    +   +          +   +S         +     +      
Sbjct: 634 ELQEKISEAFLYDTDVFVEESRLGSREIEVSCIGHSSSWYCMAGPNERCGASGFIDYQEK 693

Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                +  AKI  D+         V+ LA   ++A+  +G +R DF  D      +  E+
Sbjct: 694 YGFDGIDCAKISFDLQLSQESLDCVRELAERVYRAMQGKGSARIDFFLDEE-GNYWLSEV 752

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PGMT  S F +   +AG++  +++   + DA
Sbjct: 753 NPIPGMTAASPFLQAFVHAGWTQEQVVDHFIIDA 786


>gi|217076879|ref|YP_002334595.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
 gi|254767745|sp|B7IGP0|DDL_THEAB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217036732|gb|ACJ75254.1| D-alanine--D-alanine ligase [Thermosipho africanus TCF52B]
          Length = 367

 Score =  129 bits (325), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 76/346 (21%), Positives = 150/346 (43%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L G  S E E+S+ +     S ++   + +  I + +    +               
Sbjct: 4   VGLLFGSKSVEHEISIITAHQVLSFVDKNKYNIIPIYITKDGKWLTGKILEDLENFKNLE 63

Query: 46  ------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                   +  +  D+     HG+ GEDG +Q +LE L +PYT 
Sbjct: 64  RLEKKSKQISSISAKDGKLILHSNIKKITIDVCLLTFHGSNGEDGSIQGMLEFLNVPYTG 123

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKG 135
            G+ +S  +MDK+ +K ++    +PV   +  N+           + ++  P ++KP + 
Sbjct: 124 CGMYSSMYTMDKVITKLILKEKNIPVVDFLYTNKKNYTNDFLNHCKEVLEYPMIVKPARL 183

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD--VTEIA 193
           GSS+G+  +     +   +  +   +  D++++E+++D  EL C VMG  ++     E  
Sbjct: 184 GSSIGVKKVNDKCELEEAIETAF--SFDDKVIVEKWIDSRELNCAVMGYKNIVVSEIEEI 241

Query: 194 VPKSDFYSYELKYSSL---NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
             + DF+ Y  KY       S H++PA I  ++   ++ +A     A+ C G  R DFL 
Sbjct: 242 KKQKDFFDYNEKYVQKGKKFSNHIIPAPIDENLKNTIKSIARDTFNALECHGNIRIDFLL 301

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                K++  E+N  PG   +S +  +   +G++F +++  M+  A
Sbjct: 302 S-KDNKIYVNEVNSIPG--ALSYY--LWQMSGFTFSQVIDNMISIA 342


>gi|116490730|ref|YP_810274.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290890150|ref|ZP_06553232.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
 gi|122277086|sp|Q04G13|DDL_OENOB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|116091455|gb|ABJ56609.1| D-alanine--D-alanine ligase [Oenococcus oeni PSU-1]
 gi|290480194|gb|EFD88836.1| hypothetical protein AWRIB429_0622 [Oenococcus oeni AWRIB429]
          Length = 377

 Score =  129 bits (324), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 139/345 (40%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG SSE +VS  S K    AL+   +++  + + +   ++               
Sbjct: 7   VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A
Sbjct: 67  ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140
            A+S DK+ +K++++  G+     I++ +              +     +K    GSS+G
Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---------TCGVMGDASLDVTE 191
           +  +   +     L  S    + ++LL+E+ V+                     +     
Sbjct: 187 VSRVTNAEEYENALRDSF--QYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F        +    + +PAKI     KE++ +A  A++ +G +G +R DFL  
Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++F  E N  PG T +S+FP +   AG +  +    +++ A
Sbjct: 305 -KDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348


>gi|153214583|ref|ZP_01949470.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|153828727|ref|ZP_01981394.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
 gi|124115281|gb|EAY34101.1| D-alanine--D-alanine ligase [Vibrio cholerae 1587]
 gi|148875774|gb|EDL73909.1| D-alanine--D-alanine ligase [Vibrio cholerae 623-39]
          Length = 334

 Score =  129 bits (324), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 85/322 (26%), Positives = 129/322 (40%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDNTSYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|262173765|ref|ZP_06041442.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
 gi|261891123|gb|EEY37110.1| D-alanine--D-alanine ligase [Vibrio mimicus MB-451]
          Length = 334

 Score =  129 bits (323), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67

Query: 45  -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  ++ I       
Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTNEEQIAA--AIE 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
           +++   +Q+L+E+ V   EL                     P+  FYSYE KY  +S + 
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMTP+
Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|118586551|ref|ZP_01543993.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
 gi|118432992|gb|EAV39716.1| peptidoglycan biosynthesis D-alanyl-D-alanine ligase A [Oenococcus
           oeni ATCC BAA-1163]
          Length = 377

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 74/345 (21%), Positives = 139/345 (40%), Gaps = 52/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG SSE +VS  S K    AL+   +++  + + +   ++               
Sbjct: 7   VGLFFGGNSSEHDVSKRSAKNYYDALDPEKYQIFPVLISKKGIMIDSETSKRVLFGEDED 66

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              + +LK D+ F  +HGN GEDG +  +  L+ IPY  SG+ A
Sbjct: 67  ELLAGLPNKNADIFGPIDSIRNLKLDVLFPSVHGNLGEDGTLAGLFRLMNIPYVGSGLRA 126

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLG 140
            A+S DK+ +K++++  G+     I++ +              +     +K    GSS+G
Sbjct: 127 HAISFDKVITKELMTVNGIRNTKYIVIFQNDKNKPDWDSVSKQLGEVVFVKAANQGSSVG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL---------TCGVMGDASLDVTE 191
           +  +   +     L  S    + ++LL+E+ V+                     +     
Sbjct: 187 VSRVANAEEYENALRDSF--QYDEKLLVEKAVESPTELEIGLLGNDRVITSPIGAHWAPG 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                  F        +    + +PAKI     KE++ +A  A++ +G +G +R DFL  
Sbjct: 245 QDHGSGWFDYKNKFVDNSKMKYQIPAKISPAKSKELENMAVKAYKVLGIKGFARIDFLMS 304

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++F  E N  PG T +S+FP +   AG +  +    +++ A
Sbjct: 305 -KDGEIFLSEPNTLPGNTNMSLFPILFEAAGMNRSQQAEKLIQLA 348


>gi|260773705|ref|ZP_05882620.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
 gi|260610666|gb|EEX35870.1| D-alanine--D-alanine ligase [Vibrio metschnikovii CIP 69.14]
          Length = 334

 Score =  129 bits (323), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 132/325 (40%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG SSE E+SL S       L     F V ++++  +     +              
Sbjct: 8   LLCGGGSSEHEISLVSADYLQQQLTLTPSFDVIRVEMKPAGWFTESGDMVYLDTNSASLN 67

Query: 48  ----HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                 + D     +HG  GE G +Q++LEL  IPY   G  AS+ S +K+ SK    + 
Sbjct: 68  SEHGSHRIDFVVPCIHGYPGETGDIQSMLELAGIPYLGCGPEASSNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + +                      IK  + GSS+G   +   Q I   +  +
Sbjct: 128 GIPNTPYLFLTENNDEALCKAQQAFDKWGAVFIKAARQGSSVGCYKVTDKQQIAKAIDDA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
                 DQ+L+EQ V   EL                     P   FYSYE KY  +S + 
Sbjct: 188 F--TFSDQVLVEQAVKPRELEVAAYELGGKLHITQPGEIIAPDDAFYSYEEKYSANSHSM 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    I  +    ++R A      +  R ++R DF       +++  E+N  PGMTP+
Sbjct: 246 TKVTADNITAEQRDLIKRYAEKVFVHMKLRHLARIDFFLTSQ-GEIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  + G+SF   L   V+ +
Sbjct: 305 SMFPKMLEHHGHSFSVFLADCVQRS 329


>gi|213418537|ref|ZP_03351603.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 252

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 89/252 (35%), Positives = 134/252 (53%), Gaps = 13/252 (5%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            F  LHG  GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + +
Sbjct: 4   VFIALHGRGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVAL 63

Query: 114 NR---------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
            R                 +  P ++KP + GSS+G+  + ++ ++   L  +    H D
Sbjct: 64  TRAEFEKGLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGALSLAF--QHDD 121

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++LIE+++ G E T  ++G+  L       P   FY YE KY S  + +  PA +     
Sbjct: 122 EILIEKWLCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCPAGLEASQE 180

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +Q L   A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG S
Sbjct: 181 AALQSLVLQAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMS 239

Query: 285 FRELLLWMVEDA 296
           F +L++ ++E A
Sbjct: 240 FSQLVVRILELA 251


>gi|297172447|gb|ADI23420.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0770_33G18]
          Length = 298

 Score =  128 bits (322), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 74/263 (28%), Positives = 130/263 (49%), Gaps = 11/263 (4%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D+ F +LHG +GEDG VQ +LEL  +PY  +G+ ASA+ MDK  ++ + S+ G+P
Sbjct: 26  ESGRFDVVFPLLHGPYGEDGTVQGLLELAGVPYVGAGVAASAVGMDKELARAIFSAAGLP 85

Query: 107 VCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               +++ R            + +     P  IKP+  GSS+GI        +   +  +
Sbjct: 86  QTRFVVIRRTRWSENPNLGVQEVERDFDYPLFIKPVNLGSSVGITKAHDRDELIQGVDSA 145

Query: 158 SSWNHGDQLLIE-QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             +     + +  +    IE       D  +      VP ++FY Y  KY    +T ++P
Sbjct: 146 GVYATKILIEVSVEQAREIECAVLGEEDLEVSGVGEIVPGAEFYDYRTKYIDDCATLIIP 205

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +P    K++Q ++    +AI C G++R DFL      ++   EIN  PG TP+S++P+
Sbjct: 206 ADLPGATVKQIQEMSIRTFRAIDCSGLARVDFLI-GQDGEILLNEINTMPGFTPISMYPK 264

Query: 277 MAAYAGYSFRELLLWMVEDASCL 299
           + A AG ++ +L+  +++ A   
Sbjct: 265 LWAAAGLNYPDLIDRLIQIALAR 287


>gi|258626983|ref|ZP_05721782.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
 gi|258580736|gb|EEW05686.1| D-alanine--D-alanine ligase [Vibrio mimicus VM603]
          Length = 334

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67

Query: 45  -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  ++ I       
Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--AIE 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
           +++   +Q+L+E+ V   EL                     P+  FYSYE KY  +S + 
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMTP+
Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDGHIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|294814275|ref|ZP_06772918.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|326442667|ref|ZP_08217401.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|294326874|gb|EFG08517.1| D-alanine--D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 310

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 133/305 (43%), Gaps = 14/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S E + S  S  A   AL + G +   +D+        L     + AF   H
Sbjct: 3   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWKRLPD--FEAAFIAGH 60

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R    
Sbjct: 61  GWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGATA 120

Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +Q       I  P   KP   G S    +++ D+ +   L +   ++   + + E ++ G
Sbjct: 121 AQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSD-EFIAEPFLTG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              T GV+           +       +     K       +  PA IP  +   +Q LA
Sbjct: 180 NTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQELA 239

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                  GCRG++R DF+      +   LE+N  PG+T       MA  +G  +R ++  
Sbjct: 240 VRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEI 297

Query: 292 MVEDA 296
           M++ A
Sbjct: 298 MLQSA 302


>gi|254388377|ref|ZP_05003612.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
 gi|197702099|gb|EDY47911.1| D-alanine-D-alanine ligase [Streptomyces clavuligerus ATCC 27064]
          Length = 312

 Score =  128 bits (322), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 80/305 (26%), Positives = 133/305 (43%), Gaps = 14/305 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +A+L GG S E + S  S  A   AL + G +   +D+        L     + AF   H
Sbjct: 5   VAILAGGPSPEGQGSFLSADAAGQALRELGHETEVVDISVPDFWKRLPD--FEAAFIAGH 62

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G + EDG +Q +LE++ +PYT SG+LAS++ M K   K ++ + G+   P   V+R    
Sbjct: 63  GWYAEDGKLQGLLEVMGLPYTGSGVLASSVGMHKPTFKSLMVAHGIETLPWEPVSRGATA 122

Query: 120 SQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +Q       I  P   KP   G S    +++ D+ +   L +   ++   + + E ++ G
Sbjct: 123 AQISRVTAGIGLPLFAKPASNGESFEAGIVRSDKDLRELLAEEGEYSSD-EFIAEPFLTG 181

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE---LKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
              T GV+           +       +     K       +  PA IP  +   +Q LA
Sbjct: 182 NTFTVGVLDIDGKIEALPVLEAVSLREFYDSEAKQDPSLHEYRCPAPIPDSLRDRMQELA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                  GCRG++R DF+      +   LE+N  PG+T       MA  +G  +R ++  
Sbjct: 242 VRVFTVCGCRGVARVDFMLSE--DRPVVLEVNTVPGLTLQGNLAAMAKASGLGYRRVVEI 299

Query: 292 MVEDA 296
           M++ A
Sbjct: 300 MLQSA 304


>gi|197336773|ref|YP_002158133.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
 gi|226696393|sp|B5ETW5|DDL_VIBFM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|197314025|gb|ACH63474.1| D-alanine--D-alanine ligase [Vibrio fischeri MJ11]
          Length = 330

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 131/326 (40%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48
           +L GG  +E EVSL S K  A  L +   F ++ +++       +               
Sbjct: 6   LLCGGGGTEHEVSLVSSKYIAQQLSELDAFDITHLEIKDEGWFHIESGLKYELRSDKTLL 65

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++L++L IPY      +S  S +K+ SK    +
Sbjct: 66  SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + +     ++               +K    GSS+G   +  ++ +   +  
Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEEELAQAING 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST 212
           +    +  Q+L+E+ V   EL            T        P   FY+Y+ KY S + +
Sbjct: 186 AF--GYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243

Query: 213 HV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                   +  +  K + + +      +  + +SR DF       +++  E+N  PGMTP
Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGMTP 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G  F+  L   V +A
Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|170722840|ref|YP_001750528.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
 gi|169760843|gb|ACA74159.1| D-alanine--D-alanine ligase [Pseudomonas putida W619]
          Length = 304

 Score =  128 bits (321), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 81/299 (27%), Positives = 144/299 (48%), Gaps = 15/299 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE--DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL 58
           +A++ GG SSEREVSL + +A + +LE      ++  I  D    L L   K    F  L
Sbjct: 5   IAIITGGDSSEREVSLQTSQAVSQSLEISQIRHEIFTI-SDYRELLRLDLAKFTRVFLAL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG FGE+G+ QA LE   IPY       SA+ M+K+ +K +    G+ V   +   R   
Sbjct: 64  HGGFGENGMAQAYLEGQGIPYNGPSPQTSAICMNKLLTKHIAMGLGINVANYLYSRRGDD 123

Query: 119 DSQHLISP----PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                I+     P ++KP + G S    +V   +  +   +  ++ ++ G  +L+E+++ 
Sbjct: 124 LCVEKINEQLGTPCIVKPNREGCSFGVSLVRDLETDLQDAINAAAQFHTG--VLVEEFIS 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G EL+     + +         +S+F+SYE K+ S  +T  L   +    ++++    F 
Sbjct: 182 GPELSV-CYFNKATLPIYSLAFESEFFSYEAKFISSKTTATL-TTLDRTTHQQLNNYCFA 239

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +A+      R+DF+    + + + +E+N  PG+T  S+FP+     G  F +L+L +
Sbjct: 240 IAEALEL-DYFRADFII--HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLLL 295


>gi|209809421|ref|YP_002264959.1| D-alanyl-alanine synthetase A [Aliivibrio salmonicida LFI1238]
 gi|208010983|emb|CAQ81393.1| D-alanine--D-alanine ligase [Aliivibrio salmonicida LFI1238]
          Length = 343

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 130/326 (39%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48
           +L GG  +E EVSL S    A  L +   F+++ +++       +               
Sbjct: 19  LLCGGSGTEHEVSLVSANYIAQQLSELNTFQITHLEIKDGSWFHIESGLKYELRSDKTLL 78

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++L++  IPY      AS  S +K+ SK    +
Sbjct: 79  CNNEATAPVDYVVPCIHGYPGETGDIQSMLDMFSIPYLGCNAEASTNSFNKITSKLWYDA 138

Query: 103 CGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +P  P +                        +K    GSS+G   +   + +   +  
Sbjct: 139 LSIPNTPYLFLTENNQTTHDEALVAFDQWGSLFVKAACQGSSVGCYHVTSKEQVVEAVNN 198

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSS--LN 210
           +    + +Q+L+E+ V   EL            T +      P   FY+YE KY S   +
Sbjct: 199 AF--TYSEQVLVEKAVKPRELEVSAYEIDGELYTTLPGEVTAPDGAFYTYEEKYGSGSHS 256

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +T +    +  +  + + + +      +  + +SR DF       +++  E+N  PGMTP
Sbjct: 257 TTTLDAKNLTEEQIELINKYSRKVFTQMKLKDLSRIDFFLTDE-NEIYLNEVNTFPGMTP 315

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G+ F+  L   + +A
Sbjct: 316 ISMFPKLLEHNGHCFKTFLQKAILNA 341


>gi|259506380|ref|ZP_05749282.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
 gi|259166021|gb|EEW50575.1| D-alanine--D-alanine ligase [Corynebacterium efficiens YS-314]
          Length = 335

 Score =  128 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 86/333 (25%), Positives = 147/333 (44%), Gaps = 57/333 (17%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------- 51
            S  A  + L+   ++V  + +      V+    P                         
Sbjct: 1   MSAGAIIAHLDPEKYEVIPVGITTDGAWVVGESDPERLRLVDRTMPEVQRREEIRPSLDP 60

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F VLHG FGEDG +Q +  L +IP    G+L+SA  MDK 
Sbjct: 61  AHRGEFHFADGSLYATADVIFPVLHGRFGEDGTIQGMFALSDIPVVGPGVLSSAAGMDKE 120

Query: 95  RSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +K+++++ G+P+   +++      T   + L+  P  +KP +GGSS+GI  + + + +P
Sbjct: 121 FTKKLMAAEGLPIGREVILRDRAELTDAEKKLLGLPVFVKPARGGSSIGISKVSRWEDLP 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYE 203
             +  +    H +++++E  + G E+ CGV+      +                 FY ++
Sbjct: 181 AAVDLAR--QHDEKVIVESEIVGPEVECGVLQYPDGRIVASLPAMLRGTEDGEGGFYDFD 238

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PA +  +I + VQ LA    QA+ C G++R DF            EIN
Sbjct: 239 TKYLDNVVTAEIPAPLDEEIIELVQSLAVETFQALACEGLARVDFFVTA--NGPVLNEIN 296

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG TP+S++P+M A +G  + ELL  +V+ A
Sbjct: 297 TMPGFTPISMYPQMFAASGVGYEELLDVLVQQA 329


>gi|312883382|ref|ZP_07743108.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
 gi|309368998|gb|EFP96524.1| D-alanyl-alanine synthetase A [Vibrio caribbenthicus ATCC BAA-2122]
          Length = 334

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 140/325 (43%), Gaps = 34/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL--------------- 46
           +L GG ++E E+SL S     S LE  + F V+++++  +                    
Sbjct: 8   LLCGGGAAEHEISLISADFVQSQLELTSEFDVTRVEIKENGWFTCSGQTANIDTNSGTLQ 67

Query: 47  ---AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +QA LEL  +PY   G  AS  S +K+ SK    + 
Sbjct: 68  INGESHVIDFVVPCIHGFPGETGDIQAFLELTGLPYLGCGSEASTNSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P I ++                     +K  + GSS+G   ++++  +   L  +
Sbjct: 128 GIPNTPYIFLSENNDRALELAKESLKKWGAIFVKAARQGSSVGCYHVRQEAELLNALEGA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
              ++ DQ+LIEQ V   EL         +           P+  FYSYE KY  +S   
Sbjct: 188 F--SYSDQVLIEQAVKPRELEVAAYEYQGVLYITKPGEVIAPQDKFYSYEEKYSGTSETQ 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T V    +  D    +++ A    + +  R +SR DF   P   +V+  E+N  PGMTP+
Sbjct: 246 TVVEATNLTADQQALIRQSAEKVFKHMRLRHLSRIDFFLTP-DGQVYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S+FP+M  +  ++F E +   V+ +
Sbjct: 305 SMFPKMLQHNEHNFAEFMADCVQSS 329


>gi|258622707|ref|ZP_05717726.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
 gi|258585020|gb|EEW09750.1| D-alanine--D-alanine ligase [Vibrio mimicus VM573]
          Length = 334

 Score =  127 bits (319), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 84/322 (26%), Positives = 134/322 (41%), Gaps = 34/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL----------------- 44
           +L GG SSE E+SL S       LE    F V ++++ +                     
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFNVVRVEMKKEGWFSKHGELVYLDTNSATLN 67

Query: 45  -VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  GDNISYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  ++ I       
Sbjct: 128 GIPNTPYLFLTQNTSDSVEKARQAFRNWGSIFVKAARQGSSVGCYKVTSEEQIAA--AIE 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKY--SSLNS 211
           +++   +Q+L+E+ V   EL                     P+  FYSYE KY  +S + 
Sbjct: 186 AAFGFSEQVLVEKAVKPRELEVAAYEMNGKLFISKPGEIIAPEDAFYSYEEKYSATSHSR 245

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
           T +    +  +  + +Q+ A      +  R +SR DF        ++  E+N  PGMTP+
Sbjct: 246 TLIEAENLTDEQRELIQQSAERVFVHMKLRHLSRIDFFLT-QDDHIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S+FP+M  + G+ F E L   V
Sbjct: 305 SMFPKMLEHNGHRFSEFLAQCV 326


>gi|330829945|ref|YP_004392897.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
 gi|328805081|gb|AEB50280.1| D-alanine--D-alanine ligase [Aeromonas veronii B565]
          Length = 329

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 82/325 (25%), Positives = 133/325 (40%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L   +G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEQQLGLLSGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P +              +         IK    GSS+G      +  +   +  + 
Sbjct: 128 IPNTPYLFLTEQNEAALAEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGIADAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + +Q+LIE+ V   EL   V             EI VP+  FY+YE KYSS + T  
Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245

Query: 215 --LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +       +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP++  + G+ F + L  ++  AS
Sbjct: 305 MFPKLLEHHGHRFSDYLEQILRKAS 329


>gi|255684796|gb|ACU27887.1| D-alanine:D-lactate ligase [Staphylococcus aureus]
          Length = 314

 Score =  127 bits (318), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 70/317 (22%), Positives = 126/317 (39%), Gaps = 45/317 (14%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------------------------- 50
               A+ +    ++   I + +S    +                                
Sbjct: 1   AIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKKN 60

Query: 51  -------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + 
Sbjct: 61  HEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNA 120

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           G+      ++N+         + P  +KP + GSS G+  +     +   +  +    + 
Sbjct: 121 GIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESARQ--YD 178

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLP 216
            ++LIEQ V G E+ C V+G+++  V          Y     +  +            +P
Sbjct: 179 SKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVP 238

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           A +  +    +Q  A   ++A+GCRG++R D      + ++   E+N  PG T  S +P 
Sbjct: 239 ADLSAEERGRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPR 297

Query: 277 MAAYAGYSFRELLLWMV 293
           M A AG +  EL+  ++
Sbjct: 298 MMAAAGIALPELIDRLI 314


>gi|59713753|ref|YP_206528.1| D-alanyl-alanine synthetase A [Vibrio fischeri ES114]
 gi|81310804|sp|Q5E006|DDL_VIBF1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|59482001|gb|AAW87640.1| D-alanine-D-alanine ligase A [Vibrio fischeri ES114]
          Length = 330

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 131/326 (40%), Gaps = 35/326 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLVLAH------------- 48
           +L GG  +E EVSL S K  +  L +   F+++ +++       +               
Sbjct: 6   LLCGGGGTEHEVSLVSSKYISQQLSELDAFEITHLEIKDEGWFHIESGLKYELRSDKTLL 65

Query: 49  ------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D     +HG  GE G +Q++L++L IPY      +S  S +K+ SK    +
Sbjct: 66  SGETVSSPVDYVVPCIHGYPGETGDIQSMLDMLSIPYLGCDAESSTNSFNKITSKLWYDA 125

Query: 103 CGVPVCPSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            G+P  P + +     ++               +K    GSS+G   +  +  +   +  
Sbjct: 126 LGIPNTPYLFLTENNEETHQSALAAFKQWGGLFVKAACQGSSVGCYKVTSEAELSKAIND 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV----PKSDFYSYELKYSSLNST 212
           +    +  Q+L+E+ V   EL            T        P   FY+Y+ KY S + +
Sbjct: 186 AF--GYSQQVLVEKAVKPRELEVAAYEIDGQLFTTAPGEVTAPDGAFYTYDEKYGSGSHS 243

Query: 213 HV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                   +  +  K + + +      +  + +SR DF       +++  E+N  PGMTP
Sbjct: 244 TTSLDAQNLTEEQVKLIDQYSRKVFTQMKLKDLSRIDFFLT-DDNEIYLNEVNTFPGMTP 302

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
           +S+FP++  + G  F+  L   V +A
Sbjct: 303 ISMFPKLLEHNGDCFKTFLQKAVLNA 328


>gi|225017225|ref|ZP_03706417.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
 gi|224950000|gb|EEG31209.1| hypothetical protein CLOSTMETH_01151 [Clostridium methylpentosum
           DSM 5476]
          Length = 321

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 77/258 (29%), Positives = 128/258 (49%), Gaps = 14/258 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L+ D  F VLHG  GEDG +Q +L+L  IP+     L+SAL MDK  +  V+ + G+   
Sbjct: 66  LRIDCVFPVLHGRNGEDGTIQGLLKLAGIPFVGCDTLSSALCMDKAMTHTVLDAAGIRTA 125

Query: 109 PSILVNR--------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
               + +                +S P  +KP   GSS+GI      +S+   +  +   
Sbjct: 126 NWDQIQKTELPQLNEKCEQFIDKLSLPIFVKPANAGSSVGITKATDFESLREGIKFAF-- 183

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAK 218
            H  ++++E+ + G E+ C V+G+ +   +     +P ++FY Y+ K    +S   +PA 
Sbjct: 184 THDSKVIVEEMLSGKEVECAVLGNDAPQASALGQIIPCNEFYDYDAK-YQSDSELKIPAD 242

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     + VQ  A  A+QA+GC G++R DF        V+  E N  PG T +S++P++ 
Sbjct: 243 LDEVTTRRVQETAVRAYQALGCSGLARVDFFVSE-DGTVYLNEPNTLPGFTSISMYPKLW 301

Query: 279 AYAGYSFRELLLWMVEDA 296
            Y+G  + ELL  +V  A
Sbjct: 302 EYSGLPYSELLERLVTLA 319


>gi|117619780|ref|YP_856919.1| D-alanyl-alanine synthetase A [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|166198471|sp|A0KKW8|DDL_AERHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117561187|gb|ABK38135.1| D-alanine--D-alanine ligase [Aeromonas hydrophila subsp. hydrophila
           ATCC 7966]
          Length = 329

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 81/324 (25%), Positives = 132/324 (40%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L    G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEKQLSLLPGVEVTRVEMFADRWLSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +            +         IK    GSS+G      +  +   +  + 
Sbjct: 128 IPNTPYLFLTEQNDAALSEAKAALAKWGKVFIKAASQGSSVGCYSASNEADLVKGIADAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDAS----LDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + +Q+LIE+ V   EL   V             EI VP+  FY+YE KYSS + T  
Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELVATYPGEICVPQDKFYTYEEKYSSASHTET 245

Query: 215 --LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 +       +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 ALRAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           +FP++  + G+ F + L  ++  A
Sbjct: 305 MFPKLLEHHGHRFADYLEQILRKA 328


>gi|317122985|ref|YP_004102988.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
 gi|315592965|gb|ADU52261.1| D-alanine--D-alanine ligase [Thermaerobacter marianensis DSM 12885]
          Length = 473

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 82/259 (31%), Positives = 138/259 (53%), Gaps = 13/259 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D+ F VLHG FGEDG VQ +LEL  IPY  +G+L SA+ MDK   K++  + G+PV 
Sbjct: 164 EPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVLGSAVGMDKAVMKELFRARGLPVV 223

Query: 109 PSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           P ++V       +           +  P   KP   GSS+ I   +  + +   L ++  
Sbjct: 224 PFLVVTAARWRREPAAVIDEIEGALGYPCFTKPANLGSSVAIRRCRDRRQLEAGLAEAF- 282

Query: 160 WNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +  ++++E+ VD  E  ++     +    +     P+++FY+YE KY+   +  ++PA
Sbjct: 283 -AYDRKVVVERGVDARELEISVLGNDEPVASLPGEIRPRAEFYTYEAKYTEGGAELIVPA 341

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P  +  E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++P++
Sbjct: 342 SLPPRLVAEMQRLAVAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTALSMYPKL 401

Query: 278 AAYAGYSFRELLLWMVEDA 296
              AG S+R+L+  ++E A
Sbjct: 402 WEAAGLSYRDLITRLIELA 420



 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 25/46 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL 46
          + +L GG S E EVSL S ++   A++   F+   I + R+   +L
Sbjct: 49 VGILFGGRSGEHEVSLMSARSVYRAIDRERFEPVPIGITRAGQWIL 94


>gi|301336328|ref|ZP_07224530.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum MopnTet14]
          Length = 802

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 65/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S E ++S+ S K  A  L    ++V    + R                     
Sbjct: 450 GILCGGRSCEHDISILSAKNIARHLSSTFYEVQGFIITREGLWKKVSLLEGTEDSEKSIF 509

Query: 46  -----LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                +   + D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ +
Sbjct: 510 DSEIAMQLERLDVIVPILHGPYGEDGAIQGFLETIGKPYTGPSVVFAAIGMNKVLTKRFM 569

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +       +              P  +K    GSS+G+  +     + 
Sbjct: 570 SDLGIPVVPYLPLTLTGWKQEPEKWLAQIMKAFSFPMFVKAAHLGSSIGVFEVHDALELR 629

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             + ++   ++    + E  +   E+    +GD +       + +       + Y     
Sbjct: 630 EAIHEAFVQDND-VFIEESRLGCKEIEVSFLGDGAGVFFVAGMHERRGSGGFIDYCEKYG 688

Query: 212 THVLPAKI-------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
               P+           ++ +++   A   ++ +  +G  R DFL D      +  EIN 
Sbjct: 689 LSGKPSAQIVFDVDLSQEMQEQLLGAAEKIYRLLQGKGSCRIDFLVDDE-GSFWLSEINP 747

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PG T  S F       G+S  +++  +V
Sbjct: 748 IPGTTESSPFLTAFVRKGWSCEQIIHQLV 776


>gi|225873801|ref|YP_002755260.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
 gi|225792586|gb|ACO32676.1| D-alanine--D-alanine ligase [Acidobacterium capsulatum ATCC 51196]
          Length = 400

 Score =  126 bits (316), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 80/271 (29%), Positives = 130/271 (47%), Gaps = 19/271 (7%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------ 100
             L+ D+ F VLHG FGEDG +Q +LEL  I Y  SG+L SA  MDK   K++       
Sbjct: 122 QALQLDIIFPVLHGTFGEDGTIQGLLELAGIAYVGSGVLGSATGMDKDIMKRLFASAKLP 181

Query: 101 ---SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  +         + T   +  +  P  +KP   GSS+GI   +  + +   +  +
Sbjct: 182 ITKHVTFLRPEWEKNPRKITTQIEAALKYPVFVKPANLGSSVGISKARDRKELKAAIELA 241

Query: 158 SSWNHGDQLLIEQYVDGI-------ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           +      ++++EQ V G        E+           V    VP  +FY YE KY S  
Sbjct: 242 A--GFDRKIVVEQGVGGKRGKARELEVAVLGNNAPEASVVGEIVPGKEFYDYEAKYLSEG 299

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMT 269
           S  ++PAK+     K+++ +A  A +A  C G++R DFL +P  S +++  EIN  PG T
Sbjct: 300 SVPIIPAKLTKAQSKQIREMAVAAFRACDCAGLARVDFLMEPGTSGRIYLNEINTLPGFT 359

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            +S++P++   +G  + +L+  ++E A   R
Sbjct: 360 SISMYPKLWEASGLPYSKLIDRLIELARERR 390



 Score = 80.3 bits (196), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 15/48 (31%), Positives = 24/48 (50%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
          + +L GG S E EVSL S  +   A++   ++V  I + +    V A 
Sbjct: 6  IGILFGGRSGEHEVSLLSAASILKAIDRKKYEVVPIGITKQGRWVTAD 53


>gi|37676445|ref|NP_936841.1| D-alanyl-alanine synthetase A [Vibrio vulnificus YJ016]
 gi|39930817|sp|Q7ME85|DDL_VIBVY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|37200987|dbj|BAC96811.1| D-alanine-D-alanine ligase [Vibrio vulnificus YJ016]
          Length = 331

 Score =  126 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 78/327 (23%), Positives = 134/327 (40%), Gaps = 36/327 (11%)

Query: 3   VLMGGISSEREVSLSSGK------------ACAS-ALEDAGF-----KVSQIDVDRSVGL 44
           +L GG SSE E+SL S +                  +++ G+     ++  +D+      
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEIKNEGWFDQKERLVYLDIHTKSVK 66

Query: 45  ---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                  +  D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK    
Sbjct: 67  SDEFNESIDIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWYD 126

Query: 102 SCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + G+P  P +        +               +K  + GSS+G   +   + +   + 
Sbjct: 127 AIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAID 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--SL 209
           ++  ++H  Q+L+E+ V   EL                     P   FYSY+ KYS  S 
Sbjct: 187 KAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGSH 244

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGMT
Sbjct: 245 SITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGMT 303

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S+FP+M  + G+ F E L   +E +
Sbjct: 304 KISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|320158619|ref|YP_004190997.1| D-alanine--D-alanine ligase [Vibrio vulnificus MO6-24/O]
 gi|319933931|gb|ADV88794.1| D-alanine-D-alanine ligase [Vibrio vulnificus MO6-24/O]
          Length = 331

 Score =  126 bits (315), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 79/328 (24%), Positives = 134/328 (40%), Gaps = 38/328 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG SSE E+SL S +     L       V ++++ ++ G      +           
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEI-KNEGWFDQKERLVYLDIHTKSV 65

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK   
Sbjct: 66  KSDEFNESIHIDFIVPCIHGFPGETGDIQSLFELASIPYLGCGPEASSNSFNKITSKLWY 125

Query: 101 SSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+P  P +        +               +K  + GSS+G   +   + +   +
Sbjct: 126 DAIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTNIEQLSDAI 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--S 208
            ++  ++H  Q+L+E+ V   EL                     P   FYSY+ KYS  S
Sbjct: 186 DKAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGS 243

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + T V    +       +Q+ +    + +  R +SR DF       +++  E+N  PGM
Sbjct: 244 HSITEVEAKNLTEQQLATIQQCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S+FP+M  + G+ F E L   +E +
Sbjct: 303 TKISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|315937026|gb|ADU56035.1| hypothetical protein CA37-12 [uncultured organism CA37]
          Length = 368

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 92/297 (30%), Positives = 139/297 (46%), Gaps = 16/297 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   D+   +   L    P +   VLHGN 
Sbjct: 9   VLAGGLSLEREVSLRSGRRVFDALRGLDVDVEFGDLGPDLMRALIADPPSVVLPVLHGNP 68

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG V+ +LEL+ +PY  +   A  L+ DK  +K +V+  G+    S+ + R       
Sbjct: 69  GEDGTVREVLELVGVPYVGASAEACRLAFDKPLAKALVARAGLGTPASVTLPREAFHDLG 128

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP  GGS+ G+  ++    +P  L   + + + D  LIE+ V
Sbjct: 129 AAPLISLILKRLGLPLFVKPRAGGSAFGVGHVQDADQLPAAL--MACFAYHDTALIERAV 186

Query: 173 DGIELTCGVMG---DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+  GV+              VP+   Y Y   Y++  +    PA++       V +
Sbjct: 187 TGVEVAVGVVDLGEGPVAMPAVEIVPRRGIYDYSAHYTAGATEFFCPARLSDRAAAAVAQ 246

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A  AH+A+G R +SR+D + D    ++F LE  V PG+T  S F    A  GY+F 
Sbjct: 247 AALTAHRALGLRDLSRTDLIVD-KDDQLFVLETAVAPGLTDTSTFAMGLAAKGYAFA 302


>gi|15834763|ref|NP_296522.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
 gi|7190180|gb|AAF39021.1| UDP-N-acetylmuramate--alanine ligase/D-alanine--D-alanine ligase
           [Chlamydia muridarum Nigg]
          Length = 833

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHL------ 49
            ++ GG S E ++S+ S +  A  L  + ++V    + R           L+        
Sbjct: 481 GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF 540

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ +
Sbjct: 541 DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM 600

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +                      P  +K +  GSS+G+  +     + 
Sbjct: 601 SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR 660

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLDVTEIAVPKSDFYSYEL 204
             + ++   +  D  + E  +   E+              A +          D+     
Sbjct: 661 DAINEAFVRD-DDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYG 719

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                ++  V    +  +  +++  +A   ++ +  +G  R DF  D      +  EIN 
Sbjct: 720 LSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNE-GSFWLSEINP 778

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PGMT  S F       G++  +++  +V
Sbjct: 779 IPGMTTASPFLAAFVRKGWNREQIVHQLV 807


>gi|270284930|ref|ZP_06194324.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Nigg]
 gi|270288956|ref|ZP_06195258.1| bifunctional D-alanyl-alanine synthetase
           A/UDP-N-acetylmuramate--L-alanine ligase [Chlamydia
           muridarum Weiss]
 gi|14194947|sp|Q9PLG1|MUDD_CHLMU RecName: Full=Bifunctional enzyme MurC/Ddl; Includes: RecName:
           Full=UDP-N-acetylmuramate--L-alanine ligase; AltName:
           Full=UDP-N-acetylmuramoyl-L-alanine synthetase;
           Includes: RecName: Full=D-alanine--D-alanine ligase;
           AltName: Full=D-Ala-D-Ala ligase; AltName:
           Full=D-alanylalanine synthetase
          Length = 802

 Score =  125 bits (314), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 126/329 (38%), Gaps = 39/329 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHL------ 49
            ++ GG S E ++S+ S +  A  L  + ++V    + R           L+        
Sbjct: 450 GLICGGRSCEHDISILSAQNIAKYLSHSFYEVQYFLITREGLWKTGSSLELSEETGKTIF 509

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                    K D+   +LHG +GEDG +Q  LE +  PYT   ++ +A+ M+K+ +K+ +
Sbjct: 510 DPEIAGKLSKVDVILPILHGPYGEDGAMQGFLETIGKPYTGPSLVFAAIGMNKVLTKRFM 569

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S  G+PV P + +                      P  +K +  GSS+G+  +     + 
Sbjct: 570 SDLGIPVVPYLPLTLKGWKQDQEKCLAQIKAAFSFPMFVKSVHLGSSIGVFEVHDTNELR 629

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLDVTEIAVPKSDFYSYEL 204
             + ++   +  D  + E  +   E+              A +          D+     
Sbjct: 630 DAINEAFVRD-DDVFIEESRLGCREIEVSFLGDGSGVFFVAGMHERRGRGGFIDYQEKYG 688

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                ++  V    +  +  +++  +A   ++ +  +G  R DF  D      +  EIN 
Sbjct: 689 LSGRASAQIVFDVDLSKETREQLLGVAEKIYRLLQGKGSCRIDFFVDNE-GSFWLSEINP 747

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            PGMT  S F       G++  +++  +V
Sbjct: 748 IPGMTTASPFLAAFVRKGWNREQIVHQLV 776


>gi|262158758|ref|ZP_06029871.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
 gi|262029331|gb|EEY47982.1| D-alanine--D-alanine ligase [Vibrio cholerae INDRE 91/1]
          Length = 318

 Score =  125 bits (313), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 82/311 (26%), Positives = 125/311 (40%), Gaps = 34/311 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            +P  P + + + T                  +K  + GSS+G   +  +  I   +  +
Sbjct: 128 DIPNTPYLFLTQNTPSSIDKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEDQIAPAIEAA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
                 +Q+L+EQ V   EL                     P+  FYSYE KYS+ +   
Sbjct: 188 F--GFSEQVLVEQAVKPRELEVSAYEMNGKLYISKPGEVIAPEGTFYSYEEKYSANSHAR 245

Query: 214 VLPAKIPLDIYKEV--QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +     L    +   Q  A      +  R +SR DF       +++  E+N  PGMTP+
Sbjct: 246 TVLEAENLTEKHKELIQTYAERVFIHMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPI 304

Query: 272 SIFPEMAAYAG 282
           S+FP+M  + G
Sbjct: 305 SMFPKMLEHNG 315


>gi|315937115|gb|ADU56122.1| hypothetical protein CA915-1 [uncultured organism CA915]
          Length = 329

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 91/307 (29%), Positives = 140/307 (45%), Gaps = 16/307 (5%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNF 62
           VL GG+S EREVSL SG+    AL      V   DV   +   L    P +   VL+G  
Sbjct: 14  VLAGGLSPEREVSLQSGRRLVDALRQLDVDVEFGDVGTDLTETLMTDPPSVVLLVLYGIP 73

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-- 120
           GEDG V+ +LEL  +PY  +   A  L+ DK  +K ++   G+    S+ ++        
Sbjct: 74  GEDGTVREVLELAGVPYVGASAEACRLAFDKPLAKALLVRAGLRTPASVTLSSNAFHDLG 133

Query: 121 --------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                      +  P  +KP  GGS+ G+  ++K   +P  L   + + H D  LIE+ V
Sbjct: 134 AAPLMSLILKRLGLPVFVKPRAGGSAFGVTRVRKADELPAAL--MACFAHHDTALIERAV 191

Query: 173 DGIELTC---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            G+E+      +            VP+   Y Y   YS+  +    PA++    ++ V  
Sbjct: 192 PGVEVAVGVLDLGDGPVAMPPVEIVPRYGVYDYAAHYSAGATDFFCPARLSERAHRAVAE 251

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A  AH+A+  R +SR+D + D    +VF LE  V PG+T  S F    A  GY+F ++ 
Sbjct: 252 AAVTAHRALRLRDLSRTDLIVD-KDDQVFVLETAVAPGLTDTSTFAMGIAAQGYAFGDVW 310

Query: 290 LWMVEDA 296
             + + A
Sbjct: 311 RRLAQIA 317


>gi|126699230|ref|YP_001088127.1| putative vancomycin/teicoplanin A-type resistance protein
           [Clostridium difficile 630]
 gi|115250667|emb|CAJ68491.1| D-alanine--D-alanine ligase 2 [Clostridium difficile]
          Length = 366

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 87/261 (33%), Positives = 134/261 (51%), Gaps = 9/261 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            S    + + K D  F VLHG  GEDG VQ + EL  I     G L+SAL MDK +S ++
Sbjct: 105 ESCENDIKYTKLDFVFPVLHGKNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKL 164

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           V S G+ V  SIL+      +       ++ P  IKP++ GSS GI  I K + + + + 
Sbjct: 165 VHSEGIKVPKSILLKYSDKFNVAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAVD 224

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            +    H ++++IE+ +DG E+ C V    D  +   +       F+ Y  KY+  +S  
Sbjct: 225 LAF--EHDNEVIIEENIDGFEVGCAVLGNNDLLVGRVDEIELSKGFFDYTEKYTLKSSKI 282

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
            +PA+I LD  K +Q  A + ++ +GC G +R D    P S ++ + E+N  PG T  S 
Sbjct: 283 HMPARIDLDCEKRIQETAKIIYRTLGCSGFARVDMFLTP-SGEIIFNEVNTIPGFTSHSR 341

Query: 274 FPEMAAYAGYSFRELLLWMVE 294
           +P M    G SF E+L  ++E
Sbjct: 342 YPNMMKGIGLSFEEILDKIIE 362



 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 21/45 (46%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45
          +AV+ GG S+E +VSL S  A    L    + +  I + R     
Sbjct: 6  IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDILPIGITREGNWY 50


>gi|330719424|ref|ZP_08314024.1| D-alanyl-alanine synthetase A [Leuconostoc fallax KCTC 3537]
          Length = 377

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 78/347 (22%), Positives = 143/347 (41%), Gaps = 54/347 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------DVD----------- 39
           +A++ GG SSE +VS  S +   +A+   G + V+           D D           
Sbjct: 5   VALVFGGNSSEHDVSKRSAENIYNAIMATGKYDVTLFSIAQNGYFLDPDASRRIFEGEDE 64

Query: 40  -------------RSVGLVLAHL----KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                        +     +  +    + D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 65  QMVVDEFMAKVDEKDPLARIKAISQAGQFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 124

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++  G+     I+       N    D +  +     +K    G
Sbjct: 125 PLRGHAVSFDKVLTKELLTVNGIRNTKYIVVSPESVDNWRWSDVKTQLGDIVFVKAANQG 184

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  +  +      L  S  +++   L+ E      EL  GV+G+    V+ I    
Sbjct: 185 SSVGISRVTNELEYQRALQDSFQYDY-KVLIEEAVKGPRELEVGVIGNEKPIVSVIGAHT 243

Query: 197 SDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +   ++           +PAK+  ++ +EV+ +A  A+Q +  RG +R DF
Sbjct: 244 VPNQGDGDAWYDYSNKFVDNSSVLFEIPAKLTPEVTQEVKDMALKAYQVLDLRGEARMDF 303

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           L D  +   +  E N  PG T +S+FP +         +L+  +++ 
Sbjct: 304 LLDE-NGIPYLGEPNTLPGFTNMSLFPRLWDDTNMDNAQLVDELIQL 349


>gi|325844429|ref|ZP_08168156.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
 gi|325489103|gb|EGC91487.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter sp.
           HGF1]
          Length = 403

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 124/369 (33%), Gaps = 77/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50
           + V  GG S E E+S+ S      A++   + V  + + +            +   K   
Sbjct: 5   VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+A  V+HG  GEDG +Q   EL 
Sbjct: 65  ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------P 126
            IPY+   + A+A+  DK+  K ++   G+P+   +        +               
Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL-------------------QSSSWNHGDQLL 167
           P ++KP+  GSS+GI   K   S+   +                    + +    GD   
Sbjct: 185 PLMVKPVSLGSSVGISKAKDRASLEEAITEAISYDNKFIVEEMVTQLVEVNCSVIGDFSG 244

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +  V    +                  K             ++  ++PA++  +  K V
Sbjct: 245 AKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTKYV 304

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q LA    + +G  G++R DFL +  +  V+  EIN  PG    S+   +       F  
Sbjct: 305 QDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPG----SLSFYLWEKTDRDFTG 360

Query: 288 LLLWMVEDA 296
           L+  +VE A
Sbjct: 361 LMTSLVELA 369


>gi|293375437|ref|ZP_06621718.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
 gi|292645990|gb|EFF64019.1| D-ala D-ala ligase N-terminal domain protein [Turicibacter
           sanguinis PC909]
          Length = 403

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 72/369 (19%), Positives = 123/369 (33%), Gaps = 77/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50
           + V  GG S E E+S+ S      A++   + V  + + +            +   K   
Sbjct: 5   VGVFFGGESVEHEISIISANQAMHAIDKEKYDVVPVYLSKKREWYTGEALFDVKEYKNMD 64

Query: 51  -----------------------------------PDLAFNVLHGNFGEDGLVQAILELL 75
                                               D+A  V+HG  GEDG +Q   EL 
Sbjct: 65  ELFKKCQRITIVANKGKIQVERYPSKLFGNNILNTIDVAIPVIHGTNGEDGALQGFFELN 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------P 126
            IPY+   + A+A+  DK+  K ++   G+P+   +        +               
Sbjct: 125 GIPYSGCDVAAAAVGQDKVFMKNILRDSGLPITNYVWYYSSDWFANPEACLDAIESKLSY 184

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLL-------------------QSSSWNHGDQLL 167
           P ++KP   GSS+GI   K   S+   +                    + +    GD   
Sbjct: 185 PLMVKPASLGSSVGISKAKDRASLEEAITEAISYDNKFIVEEMVTQLVEVNCSVIGDFSG 244

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +  V    +                  K             ++  ++PA++  +  K V
Sbjct: 245 AKASVLEEVMGSDEFLSYKDKYEGGGGSKGAKTGGTKSQGMASTNRIIPARLTDEGTKYV 304

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q LA    + +G  G++R DFL +  +  V+  EIN  PG    S+   +       F  
Sbjct: 305 QDLALQTFRVLGSAGVARIDFLINAENNNVYVNEINTIPG----SLSFYLWEKTDRDFTG 360

Query: 288 LLLWMVEDA 296
           L+  +VE A
Sbjct: 361 LMTSLVELA 369


>gi|254446850|ref|ZP_05060325.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
 gi|198256275|gb|EDY80584.1| D-ala D-ala ligase N-terminal domain protein, putative
           [Verrucomicrobiae bacterium DG1235]
          Length = 310

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 91/302 (30%), Positives = 152/302 (50%), Gaps = 14/302 (4%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVL 58
           +AVL GG S EREVSL      A+A     F+V   DV     +   L   +  + F+ L
Sbjct: 6   IAVLYGGTSEEREVSLG-SGKAAAAALGKSFEVDLFDVQAYSRLPDGLDPRR-HVVFSTL 63

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           HG+FGEDG  Q +++   + Y     ++S L+ DK+ +K+ +S+ GVPV   ++     +
Sbjct: 64  HGSFGEDGTAQRMMDEAGVIYAGCDAVSSQLTFDKVATKREMSAAGVPVTREVVFADGAI 123

Query: 119 DSQHLISPP----YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                I        V+KP+  GSS+G++  + +      ++         + L+E  + G
Sbjct: 124 PGVEEIIGRLGSSVVLKPVAQGSSVGLMFAESE----AKIVGCLKNCEEGRWLVEPRIQG 179

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E T G++   ++       PKS  + Y  KY+   + ++ PA+   ++ + +++LA  A
Sbjct: 180 QEATVGILDGEAM-GVVEIRPKSGHFDYSSKYTKGLTEYIAPAEFDEELTERIRKLATKA 238

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A GCR  +R D + D      ++LEIN  PG+   S+ P  AA +GY+F ELL  +VE
Sbjct: 239 FEACGCRDYARIDCMVDT-GGNPYFLEINTLPGLKETSLLPMSAALSGYNFDELLQKLVE 297

Query: 295 DA 296
            A
Sbjct: 298 PA 299


>gi|148546755|ref|YP_001266857.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
 gi|148510813|gb|ABQ77673.1| D-alanine--D-alanine ligase [Pseudomonas putida F1]
          Length = 304

 Score =  124 bits (312), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 85/300 (28%), Positives = 144/300 (48%), Gaps = 17/300 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG--FKVSQI-DVDRSVGLVLAHLKPDLAFNV 57
           +A++ GG SSEREVSL + +A + +L+      ++  I D    + L LA  K    F  
Sbjct: 5   IAIITGGNSSEREVSLQTSEAVSQSLKTLQISHEIFTISDYRELLSLDLA--KFTRVFLA 62

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG FGE+G+ QA LE L IPY      ASA+ MDK+ +K +    G+ V   +      
Sbjct: 63  LHGGFGENGMAQAYLEGLGIPYNGPSPQASAICMDKLLTKHIARGLGINVANYLYSKNGD 122

Query: 118 MDSQHLISP----PYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 IS     P ++KP + G S    +V      +   +  ++ ++ G  +LIE+++
Sbjct: 123 DVCFEEISERLGTPCIVKPNREGCSFGVSLVRDLKADLQPAINAAAKFHTG--ILIEEFI 180

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G EL+     + S         +SDF+SY+ K+ S  +   L + +    ++ V     
Sbjct: 181 SGPELSV-CYLNKSTLPIYTVEFESDFFSYDAKFISTKTNATL-SILDRSTHQLVTNYCS 238

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+      R+DF+    + + + +E+N  PG+T  S+FP+     G  F +L+L +
Sbjct: 239 AIAEALEL-DYFRADFIV--HNTEPYLIELNTLPGLTSHSLFPKACQQHGIEFDKLVLIL 295


>gi|150020384|ref|YP_001305738.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|166198511|sp|A6LKA2|DDL_THEM4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|149792905|gb|ABR30353.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 361

 Score =  124 bits (311), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 140/342 (40%), Gaps = 57/342 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-------LAHLK--- 50
           + +  G  S E E+S+ + +   S+++   + V  I + +S           L   K   
Sbjct: 4   IGIFFGSKSVEHEISIITAQQVLSSIDRKKYNVIPIYISKSGEWFTGKVLEDLETFKDFD 63

Query: 51  -----------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                         D  F V HG  GEDG  Q + E+  IPY+ 
Sbjct: 64  KLEKKAKKIDSFSVKNNKLLLKYGLKKQTIDFCFLVFHGTNGEDGTFQGMCEIFGIPYSG 123

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGS 137
               +SA +MDK+ +K ++    + V            F    +  +  P ++KP + GS
Sbjct: 124 CNHFSSAFTMDKVVTKLLLKEKEISVVDFEYTTEINEEFFKRCEKNLGYPMIVKPARLGS 183

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-----VTEI 192
           S+G+  +   ++    +   +     +++L+E++++  E+ C VMG  ++          
Sbjct: 184 SIGVSKVVDRKNFEEAV--KNVLLFDNKVLVEKWINAREINCAVMGYKNIFVSELEEINK 241

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                +F     K     S H++PA+I  ++  +++ +A    + + C G  R DFL   
Sbjct: 242 KNDFFNFEEKYFKKGKKFSNHIIPARIDENLKNKIKEIAKDTFKILECSGNVRIDFLIA- 300

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              K++  EIN  PG   +S +  +   +G++F +++  M+ 
Sbjct: 301 --DKIYVNEINTIPG--ALSFY--IWQKSGFTFSQIIDNMIN 336


>gi|27366728|ref|NP_762255.1| D-alanyl-alanine synthetase A [Vibrio vulnificus CMCP6]
 gi|32699442|sp|Q8D781|DDL_VIBVU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|27358295|gb|AAO07245.1| D-alanine--D-alanine ligase [Vibrio vulnificus CMCP6]
          Length = 331

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 80/328 (24%), Positives = 134/328 (40%), Gaps = 38/328 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK----------- 50
           +L GG SSE E+SL S +     L       V ++++ ++ G      +           
Sbjct: 7   LLCGGGSSEHEISLLSSEYLQQQLGLIENVNVLKVEI-KNEGWFDQKERLVYLDIHTKSV 65

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q++ EL  IPY   G  AS+ S +K+ SK   
Sbjct: 66  KSDEFNESIHIDFIVPCIHGFPGETGDIQSLFELAGIPYLGCGPEASSNSFNKITSKLWY 125

Query: 101 SSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + G+P  P +        +               +K  + GSS+G   + K + +   +
Sbjct: 126 DAIGIPNTPYLFLTENNEESHQLSREAFDKWGKLFVKAARQGSSVGCYSVTKIEQLSDAI 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYS--S 208
            ++  ++H  Q+L+E+ V   EL                     P   FYSY+ KYS  S
Sbjct: 186 DKAFGFSH--QVLVEKAVKPRELEVSAYEMNGQLHISKPGEIIAPDGAFYSYDEKYSAGS 243

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            + T V    +       +Q  +    + +  R +SR DF       +++  E+N  PGM
Sbjct: 244 HSITEVEAKNLTEQQLATIQLCSEKVFRQMNLRHLSRIDFFLTSE-GEIYLNEVNTFPGM 302

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S+FP+M  + G+ F E L   +E +
Sbjct: 303 TKISMFPKMLQHNGHKFHEFLADCIERS 330


>gi|50954660|ref|YP_061948.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
 gi|50951142|gb|AAT88843.1| D-alanine:D-alanine ligase [Leifsonia xyli subsp. xyli str. CTCB07]
          Length = 297

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 89/282 (31%), Positives = 130/282 (46%), Gaps = 24/282 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +D  RS    L     DL F +LHG +GEDG +Q +LEL+ +PY  SG+LASAL MD
Sbjct: 24  VVAVDGTRSSLGDL-----DLVFPILHGPWGEDGTLQGMLELVGLPYVGSGVLASALGMD 78

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS--------QHLISPPYVIKPLKGGSSLGIIVI 144
           K  +K V+   G+PV P   V  +   +           +  P  +KP + GSS+G+  +
Sbjct: 79  KHFTKTVLQQAGIPVAPWTTVTAYEWRTGADAVRAAARELGLPVFVKPARAGSSVGVGKV 138

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASLDVTEIAVPKSD 198
           ++   +   +  +      D++LIE  V G E+              +    EI V   D
Sbjct: 139 REWPELDAAMDIAF--AEDDRVLIESGVVGREVEIAVLGGRPGESARASVAGEIVVSGRD 196

Query: 199 FYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           FY Y  KY        V PAK+      +++ L   A  AIG  G++R DF         
Sbjct: 197 FYDYAAKYLDAPGIDLVCPAKLTDAELVQMRALGVRAFDAIGGEGLARVDFFLTAEG--F 254

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              EIN  PG TP+S+FP      G S+ EL+  +++ A   
Sbjct: 255 VVNEINTMPGFTPISMFPRCWQETGLSYPELIGELIQVALAR 296


>gi|257869519|ref|ZP_05649172.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
 gi|257803683|gb|EEV32505.1| D-alanine-D-alanine ligase [Enterococcus gallinarum EG2]
          Length = 277

 Score =  124 bits (310), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 74/248 (29%), Positives = 124/248 (50%), Gaps = 7/248 (2%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           L  D  F  LHG  GE+G +QA  ++  I Y+ S    S L+MDK  +KQ++    +P  
Sbjct: 31  LNADFCFIALHGGIGENGKLQAFFDIYGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTP 90

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              +  +           P V+KP+  GSS+G+ +++  +     L ++    +  +++I
Sbjct: 91  KWQIWEQGQEVYYST---PCVVKPIDNGSSIGVEIVENKEQFFKALKKAE--KYNSKVMI 145

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           EQ ++G E + GV+GD  L      +P+  FY+YE KY    +  + PA I  D+   + 
Sbjct: 146 EQKIEGREFSVGVLGDNVLPAI-EIIPQQGFYNYENKYQKGATEEITPADISSDLATRLS 204

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +  L ++ +G    SR D++       ++ +E N  PGMTP S+ P+ A   G SF EL
Sbjct: 205 EMTVLVNKVLGLSIYSRVDYIVTKELD-IYCIEANSLPGMTPTSLLPQEAEAIGISFSEL 263

Query: 289 LLWMVEDA 296
              +VE +
Sbjct: 264 CETIVELS 271


>gi|119943830|ref|YP_941510.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
 gi|119862434|gb|ABM01911.1| D-alanine--D-alanine ligase [Psychromonas ingrahamii 37]
          Length = 380

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/353 (21%), Positives = 137/353 (38%), Gaps = 62/353 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +AV+ GG S+E +VS+ S     + ++   + V    V +                    
Sbjct: 8   VAVVFGGKSTEHDVSIISAGHILANIDMEKYFVEPFYVKKDGTFADHQELTLCLENLLNE 67

Query: 46  -------------------------------LAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
                                          +A  K D+ F VLHG  GEDG +Q +LE 
Sbjct: 68  HRDKIFPAMKEGEIELKKWIAKGTSSDFLGGIAGKKFDIVFPVLHGLNGEDGTIQGMLEF 127

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLIS 125
           + +PY   G+ ASA  +DK  +K +     +PV     V ++  ++         Q  ++
Sbjct: 128 MGVPYVGCGVSASAFCIDKEATKVICQVNDIPVMDYTAVKKYEWENSTENIINDIQKKMN 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P+ +KP + GSS+GI   +    +   L  +  ++    ++ +      ELT GVMG  
Sbjct: 188 YPFYVKPARLGSSIGISRAENTVELKTSLKDAFKYDC-KVVVEQGVESPRELTVGVMGID 246

Query: 186 SLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                      S     +++++ KY       ++PA +  +I + +++ + L  +     
Sbjct: 247 DQVSLSAIGEFSRGSNLYFNFDSKYGKTGHKGLVPAPLEENIQEIIEKYSHLIFKKFELS 306

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G +R D+       KV+  EIN  PG      F  +    G   ++ +   +E
Sbjct: 307 GFARIDYFLC--GDKVYLNEINTMPGFETGDTFMRIWQNKGVDMQKFIDKAIE 357


>gi|293401980|ref|ZP_06646120.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291304638|gb|EFE45887.1| D-alanine--D-alanine ligase [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 386

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/355 (21%), Positives = 139/355 (39%), Gaps = 67/355 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A+  GG+S E E+S+ S     +A  DA +++  + + +                    
Sbjct: 8   VAIAFGGVSVEHEISILSAMQAIAAFPDA-YEIVPLYIAKDGRMYSDASFQKTEVFQDLT 66

Query: 43  ---------------GLVLAHLK----------PDLAFNVLHGNFGEDGLVQAILELLEI 77
                            VL   K           D    +LHG  GEDG  Q  L+ L +
Sbjct: 67  KVTQEKYEVQLVREHQRVLMQWKKHHFWKTSRVIDFVLPILHGTNGEDGSFQGFLKTLHV 126

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR------FTMDSQHLISPPYVIK 131
           P+   G+L+ AL  DK+  K ++   G+P+ P     +              +  P +IK
Sbjct: 127 PFAQCGVLSGALGQDKVAMKMILQDRGLPLVPWFYWWKQEPLEEAFFAKAQRLGYPMIIK 186

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD----------GIELTCGV 181
           P   GSS+GI V++  Q +   + +     + D+++IE+ +           G       
Sbjct: 187 PSNLGSSIGIAVVQNAQELKKAMEEGF--QYDDKIVIEKMITPLREINASVLGNMEDAKC 244

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                +   +  +   D Y    K   +  +   +PA +  +  +E+   A  + QA+  
Sbjct: 245 SVLEEVVKQDTILSFQDKYEGHAKSKGMAGTNRRVPASLEKEEAQEITSYALASFQALQA 304

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            G+ R DFL +  ++ ++  EIN  PG    S+   +   +G +F +LL  +++ 
Sbjct: 305 EGVVRIDFLMNADTKDIYVNEINSIPG----SLAYYLWEASGLTFTKLLEELIQL 355


>gi|5912563|emb|CAB56200.1| D-alanine-D-alanine ligase [Prochlorococcus marinus subsp. pastoris
           str. PCC 9511]
          Length = 310

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 75/269 (27%), Positives = 131/269 (48%), Gaps = 14/269 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +    +     D+ F +LHG  GEDG +  +L+  + P    GIL SAL MDK+  K++ 
Sbjct: 42  NFLNTIEFQGIDIWFPLLHGVNGEDGAIHGLLKFTQKPIVGGGILGSALGMDKILMKKIF 101

Query: 101 SSCGVPVCPSILVNRFT-----------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           S   +P    + +               ++    +  P  +KP   GSSLGI   K    
Sbjct: 102 SHLEIPQVNYLDIQNQDLSDDKVKNNLSVEIIEKLKLPVFVKPANSGSSLGISKAKTRSE 161

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI-AVPKSDFYSYELKYSS 208
           I   L ++       +++IE+ +D  EL CG++G+  L  +EI  V  S  +       S
Sbjct: 162 IIKALQKAWEI--DSRIVIEEGLDVRELECGIIGNLKLTASEIGEVSYSTDWYDYDSKYS 219

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +++  ++PA I   I ++++ +A  + +A+   G +R DF  + +S K+F  EIN  PG 
Sbjct: 220 MDNQIIIPADIDSQISEQIKDIAIRSCRALNIYGFARVDFFLEKISNKIFLNEINTIPGF 279

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           T  S+FP +   +G +  +L+  +V+ +S
Sbjct: 280 TSKSMFPMLWNASGLNIDQLVAKLVDISS 308


>gi|222099401|ref|YP_002533969.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
 gi|221571791|gb|ACM22603.1| D-alanine--D-alanine ligase [Thermotoga neapolitana DSM 4359]
          Length = 251

 Score =  123 bits (309), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 120/252 (47%), Gaps = 11/252 (4%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + DL FNVLHG FGEDG +Q+IL+ L + YT S   +S L  DK+ + + +        
Sbjct: 2   KEFDLVFNVLHGTFGEDGSLQSILDFLGVRYTGSDAFSSMLCFDKLLAYRFLKDFVKIPN 61

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
               V          +  P V+KP + GSS+G+ + + D+     L +         +++
Sbjct: 62  F---VEVKEHIDSSPVGYPCVVKPRREGSSIGVFICESDEEFQRALKEDLPLY--GSVIV 116

Query: 169 EQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++Y+ G E+T  ++                 +  FY Y  KY+   +  +LPA +  +  
Sbjct: 117 QEYIPGREMTVSIIETEEGFKVLPILELRPKRRKFYDYIAKYTEGETEFLLPAPLKPEEE 176

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           + V+  A  A    GCRG  R D +F   + + F+LEIN  PG+T +S  P  A  AG  
Sbjct: 177 QRVKETALRAFTEAGCRGFGRVDGIF--FNGEFFFLEINTVPGLTELSDLPASAKAAGIE 234

Query: 285 FRELLLWMVEDA 296
           F EL+  +++ A
Sbjct: 235 FEELIDIIIKSA 246


>gi|238760617|ref|ZP_04621746.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238701177|gb|EEP93765.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 249

 Score =  123 bits (307), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 85/251 (33%), Positives = 137/251 (54%), Gaps = 13/251 (5%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F  LHG  GEDG +Q +LE L++PYT SG++ASAL+MDK+R+K V  + G+P+ P + +N
Sbjct: 2   FIALHGRGGEDGTLQGVLEFLKLPYTGSGVMASALTMDKLRTKLVWQASGLPISPYVALN 61

Query: 115 RFTMDSQH---------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           R    +            +  P ++KP + GSS+G+  + K   +   L+++    H   
Sbjct: 62  RQQFATLSPEALAAAVAQLGLPLIVKPSREGSSVGMSKVDKMSGLHDALVEAF--RHDSD 119

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+++ G E T  ++GD  L    I  P    Y YE KY S  + +  P+ +  ++ +
Sbjct: 120 VLIEKWLSGPEFTVAIVGDDVLPSIRIQAPGVF-YDYEAKYLSDKTQYFCPSGLSSELEQ 178

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++  LA  A+QA+ C G  R D + D      + LE+N  PGMT  S+ P  A  +G SF
Sbjct: 179 QLATLALQAYQALDCSGWGRVDVMQD-SDGSFYLLEVNTSPGMTSHSLVPMAARQSGLSF 237

Query: 286 RELLLWMVEDA 296
            +L+  ++  A
Sbjct: 238 SQLVARILTLA 248


>gi|313901574|ref|ZP_07835016.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
 gi|313468163|gb|EFR63635.1| D-alanine--D-alanine ligase [Thermaerobacter subterraneus DSM
           13965]
          Length = 426

 Score =  123 bits (307), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 84/259 (32%), Positives = 136/259 (52%), Gaps = 13/259 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D+ F VLHG FGEDG VQ +LEL  IPY  +G++ASA+ MDK   K++  + G+PV 
Sbjct: 152 EPLDVVFPVLHGTFGEDGTVQGLLELAGIPYVGAGVMASAVGMDKAVMKELFRARGLPVV 211

Query: 109 PSILVNRFTMDSQ---------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           P ++V       +           +  P   KP   GSS+GI       ++   L ++  
Sbjct: 212 PFLVVTAARWRREPAAVLDAIEQSLGYPCFTKPANLGSSVGITRCPDRVALEAGLAEAF- 270

Query: 160 WNHGDQLLIEQYVDGIE--LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +  ++++E+ VD  E  ++     D    V     P+  FY+Y  KY+   S  ++PA
Sbjct: 271 -AYDRKVVVERGVDARELEISVLGNDDPVASVPGEIRPRDAFYTYRAKYTEGGSELIVPA 329

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P  + +E+QRLA  A QAI   G++R DF  +  + ++   EIN  PG T +S++P++
Sbjct: 330 PLPPRVVEEMQRLAIAAFQAIDAAGLARVDFFLERATGRLLVNEINTIPGFTVLSMYPKL 389

Query: 278 AAYAGYSFRELLLWMVEDA 296
              AG  +R+L+  ++E A
Sbjct: 390 WEAAGLPYRDLITRLIELA 408



 Score = 77.6 bits (189), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 17/51 (33%), Positives = 26/51 (50%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + +L GG S E EVSL S ++   A++   F+   I + R    +L H  P
Sbjct: 44 VGILFGGRSGEHEVSLMSARSVFEAMDRRRFEPVPIGITREGLWILPHDAP 94


>gi|86742290|ref|YP_482690.1| D-alanyl-alanine synthetase A [Frankia sp. CcI3]
 gi|123764520|sp|Q2J6Y1|DDL_FRASC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|86569152|gb|ABD12961.1| D-alanine--D-alanine ligase [Frankia sp. CcI3]
          Length = 383

 Score =  122 bits (306), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 81/257 (31%), Positives = 129/257 (50%), Gaps = 13/257 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++ + G+PV  
Sbjct: 122 DIDVVFPLLHGPFGEDGTVQGLLEMAGLPYVGSGVFASAAAMDKQHMKALLRAAGLPVGS 181

Query: 110 SILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             ++          Q  +  P  +KP +GGSS+GI  ++    +   +  +       ++
Sbjct: 182 YAVLRAGDTLTGADQERLGLPVFVKPARGGSSIGISRVEAWADLDTAIKAAR--ASDPKV 239

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-------FYSYELKYSSLNSTHVLPAKI 219
           L+E  + G E+ CGV+G       E +VP          FY +E KY S  +   +PA +
Sbjct: 240 LVESAIVGREIECGVLGILDGPGAEASVPAEITVTSSAGFYDFEAKYMSDATHFDVPANL 299

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + +EV+  A  A +A+ C G++R D         V   E+N  PG TP S+FP M  
Sbjct: 300 SHAVREEVRGAAIAAFEALDCAGLARVDMFVTA-DDHVIINEVNTMPGFTPTSMFPRMWE 358

Query: 280 YAGYSFRELLLWMVEDA 296
            +G ++ +L+  +V  A
Sbjct: 359 ASGVTYPQLVDRLVRLA 375



 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 2  AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          A+L GG S+E  +S  S      AL+   + V  + +D     V+    P
Sbjct: 11 ALLFGGRSTEHAISCISASGVLRALDRDVYDVVPVGIDTHGRWVVLPDDP 60


>gi|227548098|ref|ZP_03978147.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227079824|gb|EEI17787.1| D-alanyl-alanine synthetase A [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 326

 Score =  122 bits (306), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 86/327 (26%), Positives = 143/327 (43%), Gaps = 54/327 (16%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------------- 51
            + L    +++  I + R    V   + P                               
Sbjct: 1   MAQLPKETYEIVPIGITREGAWVTGSIDPVGGATLPEVAPGREVALTATPQRRGTISDVA 60

Query: 52  --------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                   D+AF VLHG +GEDG +Q   EL  +PY   G+LASA +MDK  +K++VSS 
Sbjct: 61  TGEVLEVVDVAFPVLHGMYGEDGTIQGFFELSGLPYVGPGVLASACAMDKEYTKRLVSSA 120

Query: 104 GVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
           G+ V   ++V R       ++  +  P  +KP +GGSS+G+  +     +   +  +   
Sbjct: 121 GIAVTDEVIVRRGESLDDATKQRLGLPVFVKPARGGSSIGVSKVSDWAELDDAIAVAL-- 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNST 212
               + ++E  + G E+  GV+      V        +        FY +E KY     T
Sbjct: 179 QSDSKAIVEAELVGDEVEVGVLEYPDGRVEASVPATLNGTEDGEEGFYGFETKYLDEGVT 238

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             +PA    ++ ++++ LA  A +A+GCRG+SR DF            EIN  PG TP+S
Sbjct: 239 ATIPAPYSEEVTQQIRSLAITAFRALGCRGLSRVDFFLTERG--PVLNEINTMPGFTPIS 296

Query: 273 IFPEMAAYAGYSFRELLLWMVEDASCL 299
           ++P++   +G S+ ELL  +++ A   
Sbjct: 297 MYPQVWKASGVSYPELLHTLIQTALAR 323


>gi|21910620|ref|NP_664888.1| D-alanyl-alanine synthetase A [Streptococcus pyogenes MGAS315]
 gi|21904822|gb|AAM79691.1| putative D-ala,D-ala ligase [Streptococcus pyogenes MGAS315]
          Length = 321

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 74/252 (29%), Positives = 128/252 (50%), Gaps = 11/252 (4%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F VLHG  GEDG +Q  LE+L +PY  + +++S+++MDK+ +K+V+ S G+P     +
Sbjct: 61  VVFPVLHGPMGEDGSIQGFLEVLRMPYIGTNVMSSSIAMDKITTKRVLESIGIPQVAYTV 120

Query: 113 VNRFTMDSQHL------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                     L      ++ P  +KP   GSS+GI   +    +   +  +    +  ++
Sbjct: 121 YIDGQDLEACLVETLARLTFPIFVKPANMGSSVGISKAQTKVELRKAIQLAL--TYDSRV 178

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           LIEQ V   E+  G++G+  +  T     +   DFY Y+ KY     T  +PA +   I 
Sbjct: 179 LIEQGVVAREIEVGLLGNDKVKSTLPGEVIKDVDFYDYQAKYVDNKITMAIPADVDQSIV 238

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            E++  A +A +A+G  G+SR DF       +V+  E+N  PG T  S++P +    G +
Sbjct: 239 TEMRSYAEVAFKALGGCGLSRCDFFLT-QDGQVYLNELNTMPGFTQWSMYPLLWENMGLA 297

Query: 285 FRELLLWMVEDA 296
           + +L+  +V  A
Sbjct: 298 YPDLIEELVTLA 309


>gi|313888855|ref|ZP_07822516.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312845224|gb|EFR32624.1| D-ala D-ala ligase N-terminal domain protein [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 390

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 82/365 (22%), Positives = 142/365 (38%), Gaps = 77/365 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----LAHLK------ 50
           + V+ GG S E EVS+ +G      ++ + +    I + +    +    L + K      
Sbjct: 4   IGVIFGGRSVEHEVSVITGMQIIENMDKSKYNPIPIYITKDGKFLSGESLKNFKAYKDQD 63

Query: 51  -----------------------------------------PDLAFNVLHGNFGEDGLVQ 69
                                                     D  F  LHG FGEDG  Q
Sbjct: 64  FHDGVEVFFKPEYGNKNLYYVKHNPKKLFKAEYDSVEVYQKIDAIFFALHGTFGEDGCTQ 123

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-------MDSQH 122
            + EL+ +PYT  G++++A+ MDK+  ++V  S  +P+       R         ++   
Sbjct: 124 GLFELMGMPYTGCGVMSAAVGMDKVIMRKVFESEDIPMTKYKYFYREELKNLKGLIEKCK 183

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+GI  ++    +   L  ++ ++    ++ E  V+  E+   V+
Sbjct: 184 DLNFPLFVKPANLGSSIGISRVENALDLSKALEVAAHYDR-KIIVEEAVVNPREINVAVL 242

Query: 183 GDASLDVTE------------IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           G  +                     K    S   K S  +    LPA++  ++ KE++ L
Sbjct: 243 GYENDLRVSAAEEPLGFKDLLKYEDKYVSGSKGAKSSQKHQNKKLPAELKPELEKEIKEL 302

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A  A  AI   G++R DFL D    K +  EIN  PG    SI   +    G   ++L+ 
Sbjct: 303 AKKAFSAIDGAGVARIDFLVD--GDKAYVNEINTLPG----SIAFYLYEVDGLMIKDLIT 356

Query: 291 WMVED 295
            ++E 
Sbjct: 357 RLIEL 361


>gi|296111077|ref|YP_003621458.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
 gi|295832608|gb|ADG40489.1| D-alanine--D-alanine ligase [Leuconostoc kimchii IMSNU 11154]
          Length = 377

 Score =  122 bits (305), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 79/345 (22%), Positives = 145/345 (42%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A+L GG SSE +VS  S +    A+   G + V+   + ++   +          LA  
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIMATGKYDVTVFAIAQNGYFLDPESSKKILALADE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q +  LL  PY  +
Sbjct: 66  QPIVDAYMAKVDTSDPLARINALRNGGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+++             + +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNHIRNTNYIVIDTETAKDWTWDKITNELGSVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+GI  +K        L  S  +++   L+ +      EL  GV+G+    V+EI    
Sbjct: 186 SSVGISRVKNAVEFETALADSFQYDY-KVLIEQAVKGPRELEVGVIGNEEPIVSEIGAHT 244

Query: 197 SDFYSYELKYSSLNS--------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +   N+           +PA++P ++ +EV+ +A  +++ +  RG +R DF
Sbjct: 245 VPEQGEGDGWYDYNNKFVDNSAVYFEIPAQLPKEVTEEVKAMAIKSYKVLNLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           L D  +   +  E N  PG T +S+F  +  Y+     +L+  M+
Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNAKLVDMMI 348


>gi|308446762|ref|XP_003087258.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
 gi|308258347|gb|EFP02300.1| hypothetical protein CRE_28014 [Caenorhabditis remanei]
          Length = 328

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 84/317 (26%), Positives = 137/317 (43%), Gaps = 25/317 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           +AV+ GGIS E EVS++S  +   A+   G +     + R    +               
Sbjct: 9   VAVIGGGISDEHEVSIASAASVVRAVAALGLEAVPFTIARDGRWLTDDGHRLPAHEALAR 68

Query: 49  -LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               DLAF VLHG  GEDG +  +L +  IP+  + + A AL MDK  +K +    G+  
Sbjct: 69  IADCDLAFPVLHGVDGEDGAIAGLLRMAGIPFVGAPVRAGALGMDKWATKLIADDLGIAT 128

Query: 108 CPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                               + PP V+KP  GGSS G+ V+     +   + Q+    +G
Sbjct: 129 SRGALAGGWAAPVGAAFASELRPPLVVKPTTGGSSNGVFVVADRSDLVATVEQAR--AYG 186

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS----YELKYSSLNSTHVLPAKI 219
           + +L+E+YV G E+   V  DA+  +   +  +            +    ++   +PA +
Sbjct: 187 ETVLVEEYVRGREVDIAVFRDAAGGLRVGSTLEIGVVPGGVFDRAEKYDGSAEFTIPASL 246

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                  +++ A L ++A+GC G++R DF        V   E+N  PGMT  S  P M A
Sbjct: 247 DPREEGAIRQAAVLLYEALGCAGVARFDFF--ATDDGVVLNEVNTSPGMTEQSQVPRMYA 304

Query: 280 YAGYSFRELLLWMVEDA 296
             G  +  L+  ++  A
Sbjct: 305 AVGLDYAGLVGELIAAA 321


>gi|145299219|ref|YP_001142060.1| D-alanyl-alanine synthetase A [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|189083030|sp|A4SN40|DDL_AERS4 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142851991|gb|ABO90312.1| D-alanine-D-alanine ligase [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 329

 Score =  121 bits (303), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/322 (25%), Positives = 131/322 (40%), Gaps = 33/322 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDV-----------------DRSVGL 44
           +L GG  SE EVSL S       L    G +V+++++                 D+ +  
Sbjct: 8   LLCGGGGSEHEVSLRSANFLEQQLGLVPGVEVTRVEMFADRWFSADGRECKLGLDKLLSF 67

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D     +HG  GE G +Q+ LEL  +PY      AS +  +K+ +K  +S+ G
Sbjct: 68  DSVARPVDYVVPCIHGYPGETGDLQSFLELAGLPYLGCDAEASKICFNKISTKLWLSAIG 127

Query: 105 VPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P + +            +         IK    GSS+G      +  +   +  + 
Sbjct: 128 IPNTPYLFLTEQNDAALTEAKAALAKWGKVFIKAASQGSSVGCYSASNETDLLQGIKDAF 187

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGD----ASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              + +Q+LIE+ V   EL   V        +    EI VP+  FY+YE KYSS + T  
Sbjct: 188 --GYSEQVLIEKAVKPRELEVAVYQYGDELIATYPGEICVPQDKFYTYEEKYSSASHTAT 245

Query: 215 LPAKI--PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                         +   A  A + +    +SR DF       ++   EIN  PGMT +S
Sbjct: 246 SLKAEGLTQAQADAIHEYALKAFRQLKLTHLSRIDFFLTEE-GEILLNEINTFPGMTSIS 304

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
           +FP++  + G+SF   L  ++ 
Sbjct: 305 MFPKLLEHHGHSFAHYLEQILR 326


>gi|27381710|ref|NP_773239.1| D-alanine--D-alanine ligase B [Bradyrhizobium japonicum USDA 110]
 gi|27354879|dbj|BAC51864.1| bll6599 [Bradyrhizobium japonicum USDA 110]
          Length = 330

 Score =  121 bits (302), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 137/326 (42%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-----GLVLAHLKP---- 51
           + +L GG + ER VS++S +A   AL +A   +   DV+  V       +L H +P    
Sbjct: 5   ITILFGGSNRERLVSVASAQALHQALPEA--DLWWWDVEDRVHVVQSKQLLEHARPFEDE 62

Query: 52  --------------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                               D    + LHG   E+G +Q + E   +P+T SG  +S L+
Sbjct: 63  FKPGTSGIPLVQALDQAKAEDRVLVLGLHGGCAENGELQVMCEARGVPFTGSGSASSHLA 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K   +  GV    +I +    +D+        + KP + GSS G+I +   Q +
Sbjct: 123 FDKIAAKHFAALGGVTPPANIAL--DDIDAAFAEYGRLIAKPARDGSSYGLIFVNARQDL 180

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 +    +  +  I        +     G          +P    + Y  KY    
Sbjct: 181 VAVRNAAKHEEYVIEPYIAGVEATCGVLERTDGSIVSLPPIEIIPGEGNFDYAAKYLLST 240

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P +   +I   +++ A LAH+A+ C G SRSDF+       + +LE N  PG+T 
Sbjct: 241 TQEICPGRFTPEITAALKQQAMLAHRAMSCTGYSRSDFIVSAKG--LVYLETNTLPGLTK 298

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S++P+     G +F + L  +VE A
Sbjct: 299 SSLYPKALKAEGIAFVDFLRGLVELA 324


>gi|8569477|pdb|1EHI|A Chain A, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
 gi|8569478|pdb|1EHI|B Chain B, D-Alanine:d-Lactate Ligase (Lmddl2) Of
           Vancomycin-Resistant Leuconostoc Mesenteroides
          Length = 377

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A++ GG SSE +VS  S +   +A+E  G +++    + ++   +          L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+       N         +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189
           SS+GI  +   +     L  S  +++   L+ E      EL  GV+G+            
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +Y Y  K+   +     +PA++  ++ KEV+++A  A++ +  RG +R DF
Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFQIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|330443871|ref|YP_004376857.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
 gi|328806981|gb|AEB41154.1| MurC/ddl bifunctional enzyme [Chlamydophila pecorum E58]
          Length = 808

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 74/331 (22%), Positives = 130/331 (39%), Gaps = 40/331 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S E E+SL S +  +       +  +   + R     +              
Sbjct: 453 IGLVCGGKSCEHEISLLSARHVSHRFSQEYYDCTFFVISRDGLWNVVQDLNTPLPKEQGS 512

Query: 49  -----------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                      L  D    +LHG FGEDG +Q   E+L  PY    +L +A+SMDK+ +K
Sbjct: 513 PVLSSEIAKALLSIDFFLPILHGPFGEDGSIQGFFEILGKPYGGPDLLPAAISMDKLMTK 572

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL---------ISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +V S+ GVPV P   ++ F                 + P V+K    GSSLGI ++   +
Sbjct: 573 RVASAVGVPVVPYQELSLFAWKRNPEGCIRSILDIFTFPMVVKSSHLGSSLGIFLVNNKE 632

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   + ++  ++     + E  ++  E+    +G            +     +   +  
Sbjct: 633 ELEEKISEAFLYDTD-IFIEESRLESREIEISCIGQPYSFYIAKPNERRGSQGFIGYHEK 691

Query: 209 LNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                +  A+I  D+         V+  A    +AI  +G +R DF  D      +  EI
Sbjct: 692 YGLNGISSARIIFDLQLPKESENRVKEFAERVFKAIQGKGCARIDFFLDEE-GNYWLSEI 750

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N  PGMT  S F      + +S  ++L +++
Sbjct: 751 NPIPGMTASSSFLRAFEQSEWSAEKVLDYLI 781


>gi|91977855|ref|YP_570514.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
 gi|91684311|gb|ABE40613.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris BisB5]
          Length = 329

 Score =  120 bits (301), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 134/326 (41%), Gaps = 39/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV------LAHLKP----- 51
           +L GG S ER VS++S +A  +AL DA         D  +  V      LAH +P     
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDAELWFWN---DDDLVHVVAADALLAHTRPFEESF 61

Query: 52  --------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                         D A          LHG   E+G +QA+ E+  +P+T SG  AS ++
Sbjct: 62  HPAGGGIGPLERALDRAATEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHVA 121

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K+  +  G+     I +     +         + KP + GSS G+  I   Q +
Sbjct: 122 FDKIAAKRFAAIAGIRAPAGITL--DHAERALATYGRLIAKPTRDGSSYGLFFIDAKQDL 179

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 + + ++  +  +        +     G          VP    + Y+ KY + +
Sbjct: 180 VAVRNAAKTEDYLIEPFVCGVEATCGVLEQADGALLALPPVEIVPADGGFDYKAKYLAKS 239

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P +   ++   +   A  AH+ +GCRG SRSDF+         +LE N  PG+T 
Sbjct: 240 TQEICPGRFTPEVSAVIMDYAVKAHRVMGCRGYSRSDFIVAADG--PIFLETNTLPGLTK 297

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S++P+     G SF + L   +  A
Sbjct: 298 ASLYPKALKAQGISFDDFLRGQIAIA 323


>gi|227431259|ref|ZP_03913313.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227353021|gb|EEJ43193.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 386

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A++ GG SSE +VS  S +   +A+E  G +++    + ++   +          L   
Sbjct: 15  VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 74

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 75  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 134

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+       N         +     +K    G
Sbjct: 135 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 194

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189
           SS+GI  +   +     L  S  +++   L+ E      EL  GV+G+            
Sbjct: 195 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 253

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +Y Y  K+   +     +PA++  ++ KEV+++A  A++ +  RG +R DF
Sbjct: 254 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 313

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 314 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 358


>gi|116617393|ref|YP_817764.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|122272406|sp|Q03ZI1|DDL_LEUMM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1658487|gb|AAB18338.1| D-Ala-D-Ala ligase2 [Leuconostoc mesenteroides]
 gi|116096240|gb|ABJ61391.1| D-alanine--D-alanine ligase [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 377

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 147/346 (42%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A++ GG SSE +VS  S +   +A+E  G +++    + ++   +          L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATGKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDASDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+       N         +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189
           SS+GI  +   +     L  S  +++   L+ E      EL  GV+G+            
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +Y Y  K+   +     +PA++  ++ KEV+++A  A++ +  RG +R DF
Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|323144949|ref|ZP_08079509.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
 gi|322415228|gb|EFY06002.1| D-ala D-ala ligase N-terminal domain protein [Succinatimonas hippei
           YIT 12066]
          Length = 331

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 76/325 (23%), Positives = 141/325 (43%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDV---------------DRSVGLVL 46
           +L GG  +E ++SL S       + + G + V + ++               D+    V 
Sbjct: 6   LLCGGDGAEHQISLISADFIEKKINEIGEYNVIRAEIHNKKFILKDGTAGYFDKDSRFVT 65

Query: 47  AHLKPDL--AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                D+  A   +HG  GE G +Q+ LE+  IPY      AS    +K+ +K  +++  
Sbjct: 66  GSDCLDIYCAVPCIHGVPGETGDIQSFLEIFNIPYIGCKSEASHNCFNKITTKLYLTALN 125

Query: 105 VPVCPSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           +P  P ++V R                    +K    GSS+G   + K + +   ++++ 
Sbjct: 126 IPNTPFLIVPRQDELSKANALKAFDSWQDVYVKAASQGSSIGCYHVTKKEDLWDSVVEAF 185

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLN--ST 212
           +++    ++IE+ +   EL C                  +P + FY+++ KYS  +   T
Sbjct: 186 TFSED--VIIEKTIKHRELECAAYEIDGNIYITNPGEIIMPDNLFYTFDEKYSKDSGSVT 243

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            V P  +  +I + ++  A  A+  +  R +SR DF       ++   EIN  PGMTP+S
Sbjct: 244 TVEPQNLSDEIKQMIRDYARKAYLGLKLRDLSRIDFFLSDH-NEIIINEINTFPGMTPIS 302

Query: 273 IFPEMAAYAGYSFRELLLWMVEDAS 297
           +FP++  + G+   E L   +E A+
Sbjct: 303 MFPKLLEHNGHQMTEFLRQAIERAA 327


>gi|3913422|sp|Q48745|DDL_LEUME RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1185361|gb|AAA87679.1| putative D-alanine:D-alanine ligase [Leuconostoc mesenteroides]
          Length = 377

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 77/346 (22%), Positives = 146/346 (42%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDRSVGLV----------LAHL 49
           +A++ GG SSE +VS  S +   +A+E    +++    + ++   +          L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYNAIEATDKYEIIVFAIAQNGFFLDTESSKKILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL+ PY  +
Sbjct: 66  QPIVDAFMKTVDTSDPLARIHALKSAGDFDIFFPVVHGNLGEDGTLQGLFKLLDKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     I+       N         +     +K    G
Sbjct: 126 PLRGHAVSFDKALTKELLTVNGIRNTKYIVVDPESANNWSWDKIVAELGNIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189
           SS+GI  +   +     L  S  +++   L+ E      EL  GV+G+            
Sbjct: 186 SSVGISRVTNAEEYTEALSDSFQYDY-KVLIEEAVNGARELEVGVIGNDQPLVSEIGAHT 244

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +Y Y  K+   +     +PA++  ++ KEV+++A  A++ +  RG +R DF
Sbjct: 245 VPNQGSGDGWYDYNNKFVDNSAVHFEIPAQLSPEVTKEVKQMALDAYKVLNLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  +   +  E N  PG T +S+F  +  Y+  +  +L+  +++
Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDINNAKLVDMLID 349


>gi|327485602|gb|AEA80008.1| D-alanine--D-alanine ligase [Vibrio cholerae LMA3894-4]
          Length = 305

 Score =  120 bits (300), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 72/316 (22%), Positives = 112/316 (35%), Gaps = 51/316 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGL--------------VLA 47
           +L GG SSE E+SL S       LE    F V ++++ +                   L 
Sbjct: 8   LLCGGGSSEHEISLVSANYIQQQLELTPEFHVIRVEMKKEGWFSEQGALVYLDTNSATLN 67

Query: 48  HLK----PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             K     D     +HG  GE G +Q++LEL  IPY   G  ASA S +K+ SK    + 
Sbjct: 68  SDKASYPIDFVVPCIHGFPGETGDIQSMLELAGIPYLGCGPEASANSFNKITSKLWYDAL 127

Query: 104 GVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           G+P  P + + + T                  +K  + GSS+G   +  + S      + 
Sbjct: 128 GIPNTPYLFLTQNTPSSIEKAKQAFGHWGSIFVKAARQGSSVGCYKVTTEVSAYEMNGKL 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                G+ +  E                           S    Y     +         
Sbjct: 188 YISKPGEVIAPEGTF-----------------------YSYEEKYSANSHARTVLEAENL 224

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                   +           +  R +SR DF       +++  E+N  PGMTP+S+FP+M
Sbjct: 225 TEKHKELIQTYAERVFI--HMKLRHLSRIDFFLTQE-GQIYLNEVNTFPGMTPISMFPKM 281

Query: 278 AAYAGYSFRELLLWMV 293
             + G+ F E L+  V
Sbjct: 282 LEHNGHRFSEFLVQCV 297


>gi|119717708|ref|YP_924673.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
 gi|119538369|gb|ABL82986.1| D-alanine--D-alanine ligase [Nocardioides sp. JS614]
          Length = 311

 Score =  119 bits (299), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 90/310 (29%), Positives = 140/310 (45%), Gaps = 19/310 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AV+ GG S E +VSL+S  A A+ L+   + V ++ + R                    
Sbjct: 5   VAVVGGGRSCEHDVSLASAAAVAAGLDPHRYDVVRLTIGRDGAWRDGDRPVGLAAAVEVL 64

Query: 50  -KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D+ F V HG  GEDG + A+ EL  +PY  SG+ A AL+MDK  +K V ++ G+   
Sbjct: 65  RRCDVVFPVAHGPHGEDGTLAALCELAGVPYVGSGVRAGALAMDKWATKLVAAALGIATA 124

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              LV   T   +   + P V+KP+  GSS+G+  + +  S+P  L  +      D+ L+
Sbjct: 125 AGRLVTAATATQE-TWTGPVVVKPVAAGSSIGVAFVSEPASLPPALATAL--ALDDRALV 181

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS--YELKYSSLNSTHVLPAKIPLDIYKE 226
           E+ V G E+   V+  A   V      +                +   +PA +     K 
Sbjct: 182 EELVTGREIDVAVLRRADGAVVASPPLEIVADGLFDFDAKYGGRADFRVPAVLDEVDAKA 241

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A   + A+GC G++R DF            E+N  PGMT  S  P M A AG  + 
Sbjct: 242 LEGAAVATYDALGCSGVARVDFFLTDTG--PVLNEVNTVPGMTEHSQVPRMFAAAGLPYP 299

Query: 287 ELLLWMVEDA 296
           +LL  +V  A
Sbjct: 300 DLLDELVCGA 309


>gi|333024204|ref|ZP_08452268.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
 gi|332744056|gb|EGJ74497.1| putative D-alanyl-alanine synthetase A [Streptomyces sp. Tu6071]
          Length = 345

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 85/338 (25%), Positives = 138/338 (40%), Gaps = 70/338 (20%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKP--------------------------------- 51
           A++   + V  I +       LA  +P                                 
Sbjct: 4   AIDREKYDVLPIGITGEGRWALAVDEPARMAIADRAMPTVESLAESLEGSVVLPFDPSVR 63

Query: 52  -----------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                            D+ F +LHG +GEDG +Q +LEL   PY  +G+LASA+  DK 
Sbjct: 64  EVVYTEPGSVPKALGEVDVVFPMLHGPYGEDGTLQGLLELSGTPYVGAGVLASAVGQDKE 123

Query: 95  RSKQVVSSCGVPVCPSILVNRFTM------------DSQHLISPPYVIKPLKGGSSLGII 142
             K++ +S G+ V P +++                 D       P  +KP +GGSS+GI 
Sbjct: 124 YMKRIFTSFGLAVGPYLVIRPREWEQDPDAARRRIADFAGDHGWPLFVKPARGGSSVGIS 183

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFY 200
            +     +   + ++    H  + LIE  V G E+ CGV    D         +P    +
Sbjct: 184 KVDGFDGLDEAIAEAR--RHDPKFLIEALVQGREIECGVLEFEDGPRASVPAEIPPVTDH 241

Query: 201 SYE--LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           +Y         +++ ++PA +  +   EVQRLA  A +A  C G+ R+DF          
Sbjct: 242 AYYDFEAKYIDSASGLVPAPLTPEETAEVQRLAVAAFEATSCEGLVRADFFLT--DDGFV 299

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG TP+S++P+M   +G  + EL+  +++ A
Sbjct: 300 INEINTMPGFTPISMYPQMWEKSGVGYAELVDRLIQAA 337


>gi|229139253|ref|ZP_04267828.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228644312|gb|EEL00569.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 248

 Score =  119 bits (297), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 71/247 (28%), Positives = 124/247 (50%), Gaps = 9/247 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LV 113
            LHG +GEDG VQ  LE L IPY+ S +L+S + MDK  SK+++   G+     I    +
Sbjct: 3   ALHGKYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKNISKKILRYEGIETPDWIELTKM 62

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +D    +  P V+KP  GGSS+G+ ++     +   L     W    +++IE+Y+ 
Sbjct: 63  EDLNVDELDKLGFPLVVKPNSGGSSVGVKIVYDKDELISMLETVFEW--DSEVVIEKYIK 120

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TC +               ++F+ Y  KY   ++   +  ++P ++ + V + +  
Sbjct: 121 GDEITCSIFDG-KQLPIISIRHAAEFFDYNAKYDDTSTIEEV-IELPAELKERVNKASLA 178

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A+ C   +R D +        + +EIN  PGMT  S+ P+ AA AG  + +LL  ++
Sbjct: 179 CYKALKCSVYARVDMMV--KDGIPYVMEINTLPGMTQASLLPKSAAAAGIEYSKLLDMII 236

Query: 294 EDASCLR 300
           E +  +R
Sbjct: 237 ETSLRVR 243


>gi|146321214|ref|YP_001200925.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
 gi|145692020|gb|ABP92525.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Streptococcus suis 98HAH33]
          Length = 283

 Score =  119 bits (297), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 12/273 (4%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             + ++  +     +   K  + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++M
Sbjct: 3   NATIVEEQKIRPSDIYEEKA-VVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAM 61

Query: 92  DKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           DK+ +K+V+ S G+   P +       ++    + +  ++ P  +KP   GSS+GI   +
Sbjct: 62  DKITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAE 121

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYE 203
               +   L  +    +  ++L+EQ V+  E+  G     D    +    V    FY Y+
Sbjct: 122 DLAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYD 179

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF        +F  E+N
Sbjct: 180 AKYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFFLTE-DGDIFLNELN 238

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             PG T  S++P +    G ++ +L+  +V  A
Sbjct: 239 TMPGFTQWSMYPLLWDNMGLAYPDLIEELVRLA 271


>gi|217973465|ref|YP_002358216.1| D-alanyl-alanine synthetase A [Shewanella baltica OS223]
 gi|254767737|sp|B8E569|DDL_SHEB2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|217498600|gb|ACK46793.1| D-alanine/D-alanine ligase [Shewanella baltica OS223]
          Length = 337

 Score =  118 bits (296), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F         +         +K    GSS+G   +    S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQTALAQWGSIFVKAASQGSSVGCYKVDD--SAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELKYSS 208
           +   ++ +   +++E+ +   EL   V                        +  +   +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S+FP+M    G+ F E L  ++ 
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|153000567|ref|YP_001366248.1| D-alanyl-alanine synthetase A [Shewanella baltica OS185]
 gi|189083049|sp|A6WMZ6|DDL_SHEB8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151365185|gb|ABS08185.1| D-alanine--D-alanine ligase [Shewanella baltica OS185]
          Length = 337

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 70/326 (21%), Positives = 132/326 (40%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F         +         +K    GSS+G   +    S  +  
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDD--SAKVAG 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELKYSS 208
           +   ++ +   +++E+ +   EL   V                        +  +   +S
Sbjct: 186 VLKDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNS 245

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S+FP+M    G+ F E L  ++ 
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|46446032|ref|YP_007397.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46399673|emb|CAF23122.1| putative D-alanine--D-alanine ligase [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 798

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 74/348 (21%), Positives = 130/348 (37%), Gaps = 51/348 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           +A++ GG S ER +SL+S ++    L     ++  I VD                     
Sbjct: 4   IALICGGPSLERGISLNSARSVLDHLASEFIEIIPIYVDYQNFFYLISTAQLYSNTPADF 63

Query: 43  GLVLAH--------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
              L                   DL F V+HG FGEDG +Q ILE +++P+  +G  A A
Sbjct: 64  DFKLKKSAQAMNREEFKKILRNIDLVFPVIHGIFGEDGELQKILEEIDVPFVGTGSQACA 123

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-------PYVIKPLKGGSSLGI 141
               K  + Q++     P    + V   T D   + S          ++KP  GGSS+G+
Sbjct: 124 EMFCKYHASQILHQNRFPAFMKLEVCPETNDLAPIKSFFEQHQLKRAIVKPTMGGSSIGV 183

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             ++  +     +          + LIE + +G E T  V+ +       +  P     S
Sbjct: 184 TSVQTPEDAFEKIKMLCQQGIAKRALIEPFCEGTEFTVVVLQNQQSKPVALI-PTEIEMS 242

Query: 202 YELKYSSLNST---------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
           Y+                  +  PA+    I + +++ A         R  +R D     
Sbjct: 243 YQNHQIFDYRKKYLPTNQTTYHTPARFDETIIQGIRQKAEAIFTLFHMRDFARLDGWLL- 301

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +++ ++N   GM   S     A+  G + R++   ++  ++CLR
Sbjct: 302 NDGTIYFTDLNPISGMEQNSFLFRQASLLGLTHRDVFRLII-TSACLR 348



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/118 (16%), Positives = 33/118 (27%), Gaps = 4/118 (3%)

Query: 3   VLMGGISSEREVSLSSGKAC-ASALEDAGFKVSQ-IDVDRSVGLVL--AHLKPDLAFNVL 58
           VL GG ++ER+VSL SG       L  + +           +   L  A+        +L
Sbjct: 369 VLFGGKNAERQVSLMSGTNVWLKLLRSSKYHPIPFFYGKNDLIWQLPYAYTLDHTVEEIL 428

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           H     +   + +           GI  +          Q            + +   
Sbjct: 429 HRCLAREASNKKLPNYFNSICEQLGIPYNFQETPSSMCLQDFYQLSASNQAFVFIAMH 486



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM--AAYAGYSFRELLLWMV 293
           +  +  +R D  +   ++K+  +E N  PG+TP ++F +   A     +   LL  ++
Sbjct: 726 LQIQNYARLDIFYHRETKKMVVIEANTLPGLTPSTVFYQQGLAEKKPLNPLSLLEIII 783


>gi|126090206|ref|YP_001041687.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|126174499|ref|YP_001050648.1| D-alanyl-alanine synthetase A [Shewanella baltica OS155]
 gi|125997704|gb|ABN61779.1| D-alanine--D-alanine ligase [Shewanella baltica OS155]
 gi|125999862|gb|ABN63932.1| hypothetical protein Sbal_4569 [Shewanella baltica OS155]
          Length = 337

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDSELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F         +         +K    GSS+G   +     +   L
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211
             +  +     +        +E+         +      +       Y        +   
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247

Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S+FP+M    G+ F E L  ++ 
Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|2833427|sp|Q47823|DDL_ENTGA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|1244572|gb|AAB17903.1| D-alanine:D-alanine ligase [Enterococcus gallinarum]
          Length = 316

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 124/305 (40%), Gaps = 40/305 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +L GG S+E +VSL S  +  +A+    ++V  + + R    +               
Sbjct: 3   IILLYGGRSAEHDVSLLSAFSVVNAVYYNYYQVQLVMITRDGQWLKGSLLTEAPTSKEVL 62

Query: 46  ---------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                              +  + F +LHG  GEDG +Q  LE + +PY  +G+L SA  
Sbjct: 63  NLTDSAYQGTPIQPGEIKEEDAIVFPLLHGPNGEDGTIQGFLETIGMPYVGAGVLTSACG 122

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLGI 141
           MDK+ +K ++ + G+P  P + V +              +  +  P  IKP   GSS+GI
Sbjct: 123 MDKIMTKYILQAAGIPQVPYVPVLKNYWKENPKKVFEQCEGSLLYPMFIKPANMGSSVGI 182

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +  + +   L ++  ++    +        IE+      D    +    V    FY 
Sbjct: 183 TKAENREELQNALQEAYRYDTRAIVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYD 242

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           Y  KY        +PA+IP +   + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 243 YNSKYLDNKIEMQIPAQIPEETQAKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 301

Query: 262 INVQP 266
           +N  P
Sbjct: 302 LNTIP 306


>gi|304408639|ref|ZP_07390260.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|307305468|ref|ZP_07585216.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
 gi|304352460|gb|EFM16857.1| D-alanine/D-alanine ligase [Shewanella baltica OS183]
 gi|306911771|gb|EFN42196.1| D-alanine/D-alanine ligase [Shewanella baltica BA175]
          Length = 337

 Score =  118 bits (295), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 66/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTTAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F         +         +K    GSS+G   +     +   L
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211
             +  +     +        +E+         +      +       Y        +   
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247

Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +  +I ++++  +  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQHVSAEISEQIRAYSIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S+FP+M    G+ F E L  ++ 
Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|83815518|ref|YP_446302.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294508238|ref|YP_003572296.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
 gi|83756912|gb|ABC45025.1| D-alanine--D-alanine ligase [Salinibacter ruber DSM 13855]
 gi|294344566|emb|CBH25344.1| D-alanine--D-alanine ligase A [Salinibacter ruber M8]
          Length = 434

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/384 (20%), Positives = 138/384 (35%), Gaps = 94/384 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           + +++GG++ E EVS+ +    A+AL+   +    I V +                    
Sbjct: 24  VGIVLGGVAPEHEVSVITALQAAAALDRDRYTPVPIYVAKDGTWYTGDALLEVEAYRDLD 83

Query: 45  ----------------------------VLAHL-------KPDLAFNVLHGNFGEDGLVQ 69
                                       +L  L       + D+    LHG  GE+G VQ
Sbjct: 84  ALREDALPVALAPTPYGHLELLEDRAPGILKRLQRPALRRRIDVMLLGLHGGPGENGGVQ 143

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DS 120
            + E   +PYT +G+  SAL MDK+ SK+V    G+PV   + +              + 
Sbjct: 144 GLCETFNVPYTSAGVFGSALGMDKVMSKRVCRQAGIPVVDFVALREGEWAGREAAALDEC 203

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------- 173
           +  +  P V+KP + GSS+GI  +     +   +  +    + D++++E+ V+       
Sbjct: 204 EATLDYPLVVKPARCGSSIGIAQVNTRAELDAAIEDAL--RYDDKVVVEKAVEALREINC 261

Query: 174 ---GIELTCGVMGDASLDVTEIAVPKSDFYSYE------------------LKYSSLNST 212
              G               ++     +    Y                            
Sbjct: 262 SVLGDGHEATPSVLEEPVPSDDDAVLTFQDKYMREDGEAAKAEGGTKSAESSPEGMAAQD 321

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            ++PA +  +  + +Q LA        C G+ R DF+ D  + +V++ EIN  PG    S
Sbjct: 322 RIVPANLSDERTETIQDLAVRIFHQFECAGVVRIDFMIDESTGRVYFNEINTIPG----S 377

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
               +   +G SF  L+  +V  A
Sbjct: 378 FSFYLWEPSGVSFDALVDRLVTIA 401


>gi|330836876|ref|YP_004411517.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
 gi|329748779|gb|AEC02135.1| D-alanine--D-alanine ligase [Spirochaeta coccoides DSM 17374]
          Length = 388

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 94/369 (25%), Positives = 142/369 (38%), Gaps = 76/369 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AVL GG S E +VS  S +     L  AG+ V  I + R+    L              
Sbjct: 4   VAVLSGGRSPEHDVSRMSAENICKELVAAGYGVLPIVITRNGRWFLQDVHESVAVIRQEA 63

Query: 47  ----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                             L  D+ F V HG  GEDG +QA+LEL  +PY  SG +AS + 
Sbjct: 64  ERGVSIHPGDGLWMNGEKLAVDIVFPVTHGTEGEDGRLQALLELAHLPYAGSGTVASMMG 123

Query: 91  MDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPP-------------------- 127
           M K  +K V    G+PV PSI     +   + +      P                    
Sbjct: 124 MYKNLAKDVARILGIPVTPSILLSPDDIAWLGNDEDAPFPRLFTSFDISPDSTGTARADL 183

Query: 128 ------------YVIKPLKGGSSLGII-VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                        ++KP   GSS+G+  + +    I LD +  +       L+     D 
Sbjct: 184 FLGVLQEKLGKSLLVKPEASGSSVGVTALPQPGAEIFLDAVFMAYIPGERVLVETFIPDV 243

Query: 175 IELTCGVMGDASLDV------TEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEV 227
           +EL C ++      V            +    SY++KYS     T   P  I  +  + +
Sbjct: 244 MELECALLEAEDEIVTAGPGLVRKPAGEESILSYDIKYSVHRHATMEYPPPIAREEAEMI 303

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A     A+GC G +R DF  DP      ++F+ EIN  PG+T  S +P +    G  
Sbjct: 304 ATYARSLFSALGCTGYARVDFFIDPSGKPDARIFFNEINTLPGLTDTSHWPFLMKCKGLE 363

Query: 285 FRELLLWMV 293
           + ++LL ++
Sbjct: 364 WPQMLLEIL 372


>gi|28493472|ref|NP_787633.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
 gi|39930872|sp|Q83G28|DDL_TROWT RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28476514|gb|AAO44602.1| D-alanine--D-alanine ligase [Tropheryma whipplei str. Twist]
          Length = 347

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 54/344 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48
           +L GG S E  VS +S +A    + D  + V  + + +               G V+ + 
Sbjct: 6   LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    ++ DL F +LHG FGEDG +Q +L+LL+IPY  SG
Sbjct: 65  NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134
           + ASA +MDK  +K + S  G+PV P  L+                    + P  +KP+ 
Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G   +   + +P+ +  +        +        +  +             + V
Sbjct: 185 AGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELVFV 244

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S    Y+     LN    +      +     +  + +  + +GCR  +R DF      
Sbjct: 245 KHSGSKFYDYSAKYLNPVEFVIPAQFDNTDGYAEIASKVFFE-LGCRHYARIDFFVTESG 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             +   EIN  PG+T  SIFP         + +++  ++  A C
Sbjct: 304 --LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343


>gi|28572416|ref|NP_789196.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
 gi|39930876|sp|Q83I36|DDL_TROW8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|28410547|emb|CAD66933.1| D-alanine--D-alanine ligase A [Tropheryma whipplei TW08/27]
          Length = 347

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 77/344 (22%), Positives = 130/344 (37%), Gaps = 54/344 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR-------------SVGLVLAH- 48
           +L GG S E  VS +S +A    + D  + V  + + +               G V+ + 
Sbjct: 6   LLFGGRSQEHSVSYASARALLEHICDE-WTVIPVGITKHGDFVYCSTVSEQDYGEVIDNG 64

Query: 49  -------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    ++ DL F +LHG FGEDG +Q +L+LL+IPY  SG
Sbjct: 65  NRVVWPSRAGCKKIEVVQARGKSFFVEFDLVFPLLHGVFGEDGTIQGMLDLLDIPYVGSG 124

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---------LISPPYVIKPLK 134
           + ASA +MDK  +K + S  G+PV P  L+                    + P  +KP+ 
Sbjct: 125 VFASAAAMDKHYTKILCSHAGIPVLPWYLIKGHAWHKNRDSFLKQISDRFTFPLFVKPVD 184

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS G   +   + +P+ +  +        +        +  +             + V
Sbjct: 185 AGSSFGCTFVDFFEQLPVAIEHALQHGKSAIVEPALDAPEVFCSLIENNGVLQCSELVFV 244

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             S    Y+     LN    +      +     +  + +  + +GCR  +R DF      
Sbjct: 245 KHSGSKFYDYSAKYLNPVEFVIPAQFDNTDGYAEIASKVFFE-LGCRHYARIDFFVTESG 303

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             +   EIN  PG+T  SIFP         + +++  ++  A C
Sbjct: 304 --LVLNEINTSPGLTQKSIFPSSFKS--MQYSQVIETILASAYC 343


>gi|160875203|ref|YP_001554519.1| D-alanyl-alanine synthetase A [Shewanella baltica OS195]
 gi|189083050|sp|A9L0H9|DDL_SHEB9 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|160860725|gb|ABX49259.1| D-alanine--D-alanine ligase [Shewanella baltica OS195]
 gi|315267396|gb|ADT94249.1| D-alanine/D-alanine ligase [Shewanella baltica OS678]
          Length = 337

 Score =  118 bits (294), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 125/324 (38%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     ++L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFETSLAKSEQFSVLRVELDKFGQYRTAAGDDCELTNSREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKTPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N+F         +         +K    GSS+G   +     +   L
Sbjct: 128 SALGIPNTPYIFLNQFDDAAIEQTQAALAQWGSIFVKAASQGSSVGCYKVDDSDKVAGVL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS--- 211
             +  +     +        +E+         +      +       Y        +   
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYNGEVVATVPGEIICDTNTFYTFDEKYAKNSKA 247

Query: 212 -THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +  +I ++++  A  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQHVSAEISEQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S+FP+M    G+ F E L  ++ 
Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|117920750|ref|YP_869942.1| D-alanyl-alanine synthetase A [Shewanella sp. ANA-3]
 gi|189083055|sp|A0KXL7|DDL_SHESA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|117613082|gb|ABK48536.1| D-alanine--D-alanine ligase [Shewanella sp. ANA-3]
          Length = 336

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 73/326 (22%), Positives = 131/326 (40%), Gaps = 37/326 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLA-------------- 47
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 48  ---HLKP----DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                KP    D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKPAWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N++         +         +K    GSS+G   +     +   L
Sbjct: 128 SALGIPNTPYIFLNQYDDDAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVADVL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210
             +    +   +++E+ +   EL   V       V  +        +    +        
Sbjct: 188 KDAF--GYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   +P DI ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S+FP+M    G+ F E L  ++ 
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|227488097|ref|ZP_03918413.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227541494|ref|ZP_03971543.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227091959|gb|EEI27271.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182776|gb|EEI63748.1| D-alanyl-alanine synthetase A [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 315

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 8/255 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F VLHG  GEDG +Q + EL  +PY  +G+LASA  MDK  +K++    G+P+   +
Sbjct: 61  DVIFPVLHGLNGEDGTIQGLFELSGVPYVGNGVLASACGMDKQYTKKLCKLAGLPIGKDL 120

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++          ++ P  +KP +GGSS+GI  ++    I   +  +   +    +  E  
Sbjct: 121 VLEGGEEFIPGTLNFPVYVKPARGGSSIGISRVEDVSGIDEAIRLARESDPKVIIEEEIK 180

Query: 172 VDGIELTCGVMGDASLDV------TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
              +E       D  +              ++ FY +  KY     +  +PA++  +   
Sbjct: 181 GIEVECGVLEYPDGRVVAAAPAELIGTEDGEAGFYDFSAKYLDGQVSAHIPARLSEEETA 240

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            V+ +A    +A+ C G++R DF            EIN  PG TP+S++P++    G S+
Sbjct: 241 RVKEIAVQTFKALNCNGLARVDFFVTEHG--PVINEINTLPGFTPISMYPQVFQAEGISY 298

Query: 286 RELLLWMVEDASCLR 300
            +LL  ++E A   +
Sbjct: 299 GDLLHILIEQALATK 313


>gi|300172646|ref|YP_003771811.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
 gi|299887024|emb|CBL90992.1| D-alanine--D-alanine ligase [Leuconostoc gasicomitatum LMG 18811]
          Length = 377

 Score =  117 bits (293), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 82/346 (23%), Positives = 144/346 (41%), Gaps = 56/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A+L GG SSE +VS  S +    A++  G ++++   + ++   +          L   
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNFYDAIKATGKYEITVFAIAQNGYFLDPESSNRVLALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  QPIVDAYMAKIDTTDPLARISALSEGGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++  G+     ++                 +     +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNGIRNTKYVVLDPKTAKEWTWEKVVAALGDIVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195
           SS+GI   K        L  S    +  ++L+EQ V G  EL  GV+G+    V+EI   
Sbjct: 186 SSVGISRAKNAVEFEAALSDSF--QYDYKVLVEQAVKGSRELEVGVIGNEEPIVSEIGAH 243

Query: 196 KSDFYSYELKYSSLNSTH--------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                     +   N+           +PAK+P  +  EV+ +A  A++ +  RG +R D
Sbjct: 244 TLPNQGSGDAWYDYNNKFVDNSDVLFEIPAKLPESVTNEVKDMAIQAYKVLNLRGEARMD 303

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           FL D  +   +  E N  PG T +S+F  +  Y+     +L+  ++
Sbjct: 304 FLLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVKLVDMLI 348


>gi|325915873|ref|ZP_08178170.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
 gi|325537916|gb|EGD09615.1| D-alanine--D-alanine ligase [Xanthomonas vesicatoria ATCC 35937]
          Length = 286

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 68/256 (26%), Positives = 129/256 (50%), Gaps = 12/256 (4%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+ F ++HG  GEDG +Q +L +  +P+  SG+L SA++MDK  +K+V+   G+ V P
Sbjct: 16  QIDVVFPIVHGTLGEDGSLQGLLRMTNLPFVGSGVLGSAVAMDKDMAKRVLRDAGLAVAP 75

Query: 110 SILVNRFTMDSQH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +  NR T            +  P  +KP   GSS+G+  +            + + ++ 
Sbjct: 76  FVCFNRRTAAQADVAALIAQLGLPLFVKPANQGSSVGVSQVHSAD--AFAAALALALSYD 133

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIP 220
            ++L+E  + G E+ C V+G+A+   +           Y  +   +++     V+PA I 
Sbjct: 134 HKVLVEAAIVGREIECAVLGNATPQASVCGEVVVHDAFYSYETKYISAHGADIVIPADIY 193

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
               + +Q++A  A+QA+ C G++R D        ++   E+N  PG T +S++P++   
Sbjct: 194 AHTQQRIQQIAVQAYQALDCAGMARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQA 252

Query: 281 AGYSFRELLLWMVEDA 296
           +G  +R L+  ++E A
Sbjct: 253 SGLDYRSLITQLIELA 268


>gi|298378695|ref|ZP_06988579.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
 gi|298281029|gb|EFI22530.1| LOW QUALITY PROTEIN: D-alanine-D-alanine ligase B [Escherichia coli
           FVEC1302]
          Length = 215

 Score =  117 bits (292), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/173 (30%), Positives = 88/173 (50%), Gaps = 4/173 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P ++KP + GSS+G+  +  + ++   L  +    H +++LIE+++ G E T  ++G
Sbjct: 46  LGLPVIVKPSREGSSVGMSKVVAENALQDALRLAF--QHDEEVLIEKWLSGPEFTVAILG 103

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  L       P   FY YE KY S  + +  PA +       +Q L   A   +GC+G 
Sbjct: 104 EEILPSI-RIQPSGTFYDYEAKYLSDETQYFCPAGLEASQEANLQALVLKAWTTLGCKGW 162

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ ++E A
Sbjct: 163 GRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRILELA 214


>gi|170016570|ref|YP_001727489.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
 gi|229485963|sp|B1MWZ3|DDL_LEUCK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|169803427|gb|ACA82045.1| D-alanine--D-alanine ligase [Leuconostoc citreum KM20]
          Length = 377

 Score =  116 bits (291), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 78/346 (22%), Positives = 141/346 (40%), Gaps = 54/346 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSV----------GLVLAHL 49
           +A++ GG SSE +VS  S +    A+   G ++++   + ++            L L   
Sbjct: 6   VALIFGGNSSEHDVSKRSAQNFYDAILATGKYRITVFAIAQNGYVLDPERSKRILALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q + +LL  PY  +
Sbjct: 66  RPIVADYMTTVDQQDPLSRINALRAAGDFDIFFPVVHGNLGEDGTLQGLFKLLNKPYVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGG 136
            +   A+S DK+ +K++++   +     I+V+               +     +K    G
Sbjct: 126 PLRGHAVSFDKVLTKELLTVNNIRNTKYIVVDEKTAKTLTWAQVVKDLGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+   K        L  S  +++   L+        EL  GV+G+    V+EI    
Sbjct: 186 SSVGVSRAKTADEFEAALTDSFQYDY-KVLIEAAVKGPRELEVGVIGNEDPIVSEIGAHH 244

Query: 197 SDFYSYELKYSSLNS--------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +   N+           +PA +P  +  EV+ +A  A++ +  RG +R DF
Sbjct: 245 VPNQGDGDAWYDYNNKFVDNSSVQFEIPANLPDAVTAEVKDMALKAYKVLDLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           L D  +   +  E N  PG T +S+F  +  Y+     EL+  +++
Sbjct: 305 LLDE-NNVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVELVDKLID 349


>gi|113970466|ref|YP_734259.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-4]
 gi|123029617|sp|Q0HIB5|DDL_SHESM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113885150|gb|ABI39202.1| D-alanine--D-alanine ligase [Shewanella sp. MR-4]
          Length = 336

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 123/324 (37%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150
           S+ G+P  P I +N++         +         +K    GSS+G   +         +
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVAGVL 187

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 +        +   +    +    G +                 +  +   SS  
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKA 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +P DI ++++  A  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQNVPTDISEQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S+FP+M    G+ F E L  ++ 
Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIN 330


>gi|312133370|ref|YP_004000709.1| ddla [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772595|gb|ADQ02083.1| DDlA [Bifidobacterium longum subsp. longum BBMN68]
          Length = 395

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 131/266 (49%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKADDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+    AG S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDAAGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|146342495|ref|YP_001207543.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
 gi|146195301|emb|CAL79326.1| D-alanine-D-alanine ligase, affects cell division [Bradyrhizobium
           sp. ORS278]
          Length = 329

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 147/327 (44%), Gaps = 41/327 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD---RSVGLVLAHLKP-------- 51
           +L GG + ER VS++S KA  +AL +A     + D      S   ++AH KP        
Sbjct: 5   ILFGGSNKERLVSVASAKALHAALPEADLWFWEADDTVQQASGPALVAHAKPFEEPFTAD 64

Query: 52  -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D    + LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GVRIGTLAEALDRARAEDRILVLGLHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+     GV     + +     ++        + KP+K GSS G+I +   Q +   
Sbjct: 125 VAAKRFAVLGGVTAAEGVAL--DNAETALARYGKLIAKPVKDGSSFGLIFVNAKQDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209
              +++    ++ LIE +V G E TCGV+  A   +        +P    ++Y  KY + 
Sbjct: 183 KAAAAT----EEYLIEPFVTGKEATCGVLEQADGSLIALPPIEILPADGAFNYFAKYLAA 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + P +   ++   +QR A  AH+A+ C G SR+DF+       V+ LE N  PG+T
Sbjct: 239 ATKEICPGRFNPEVTAALQREAIKAHRALSCGGYSRTDFIVSA-DGPVY-LETNTLPGLT 296

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S++P+  A  G  F + L   +  A
Sbjct: 297 AASLYPKALAAQGIPFADFLQQQIALA 323


>gi|150390714|ref|YP_001320763.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
 gi|149950576|gb|ABR49104.1| D-alanine--D-alanine ligase [Alkaliphilus metalliredigens QYMF]
          Length = 339

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 73/292 (25%), Positives = 121/292 (41%), Gaps = 18/292 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           +     L        +I VD  +   L     D+ FN+  G         + A+LE+L I
Sbjct: 33  EQIFRIL-SKKHNTVKIQVDEKISENLVKSDVDIVFNLSTGVRGESRQSQIPALLEMLGI 91

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PY  SGILA +L+++K  +K++    GVP     +           +  P + KP   GS
Sbjct: 92  PYVGSGILAHSLALNKAMAKKIFQYHGVPTPAFQVFQTGEEKLDSNLKFPLIAKPACEGS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
             GI V          + + S     +   +L+E++++G E T GV+G+         + 
Sbjct: 152 GFGIHVDSVVYDEQGLMKKVSELLRQYEPPVLVEEFIEGREFTVGVIGNGESKRILPIME 211

Query: 196 KSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                  E                   +  PA I + + K +      A   +GC+ I+R
Sbjct: 212 IDFEDIPEEHGKFYTFEVKNNFGDQTKYHCPASISMALEKSIMENVSKAFDVLGCKDIAR 271

Query: 246 SDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D L    + + + LEIN  PG+    S  P+MA  AG S++EL++ ++E A
Sbjct: 272 VDVLV--KNERPYILEINSLPGLKHLHSDLPKMAVVAGLSYKELIMEILEVA 321


>gi|39936587|ref|NP_948863.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
 gi|39650443|emb|CAE28966.1| putative D-alanyl-D-alanine ligase A [Rhodopseudomonas palustris
           CGA009]
          Length = 329

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 86/324 (26%), Positives = 133/324 (41%), Gaps = 35/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A  SAL DA       D DR    S   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWN-DDDRVHAVSAQALLAHARPFEEAFVP 63

Query: 52  ------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                       D A          LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+  +  GV     I +     ++        + KP   GSS G+  I   Q +  
Sbjct: 124 KVAAKRFAAIAGVRTVTGIAL--ADAEAALEAHGRLIAKPACDGSSYGLFFINAKQDLVA 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + + ++  +  +        +     G          VP    + Y  KY + ++ 
Sbjct: 182 VRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEIVPADGGFDYTAKYLAKSTQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG+T  S
Sbjct: 242 EICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLTKAS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++P+     G  F + L   +  A
Sbjct: 300 LYPKALNALGIPFVDFLRGQIALA 323


>gi|316933192|ref|YP_004108174.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
 gi|315600906|gb|ADU43441.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris DX-1]
          Length = 329

 Score =  116 bits (290), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 133/324 (41%), Gaps = 35/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR----SVGLVLAHLKP------- 51
           +L GG S ER VS++S +A   AL DA       D DR    +   +LAH +P       
Sbjct: 5   ILFGGTSKERLVSVASAQALQRALPDADLWFWN-DDDRVHCVTAQTLLAHARPFEEPFAP 63

Query: 52  --------DLAFN-----------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                   D+A +            LHG   E+G +QA+ EL  +P+T SG  AS L+ D
Sbjct: 64  DGEMVGPLDIALDRAAAEHRLLVLGLHGGVAENGELQAMCELRRVPFTGSGAAASHLAFD 123

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K  +K+  +  GV     I +       +       + KP + GSS G+  I   Q +  
Sbjct: 124 KAAAKRFAAIAGVRTSVGIALADAEAALET--HGRLIAKPTRDGSSYGLFFINARQDLVA 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + + ++  +  +        +     G          VP    + Y  KY + ++ 
Sbjct: 182 VREAAKTEDYLIEPFVAGVEATCGVLEAEDGSLLALPPIEIVPADGGFDYTAKYLAKSTQ 241

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P +   ++   +   A  AH+ + CRG SRSDF+         +LE N  PG+T  S
Sbjct: 242 EICPGRFAPEVAAMIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLTGAS 299

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++P+     G  F + L   +  A
Sbjct: 300 LYPKALKAQGIDFVDFLKGQIALA 323


>gi|68536294|ref|YP_250999.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
 gi|123650831|sp|Q4JUX6|DDL_CORJK RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|68263893|emb|CAI37381.1| putative D-alanine-D-alanine ligase [Corynebacterium jeikeium K411]
          Length = 373

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 78/258 (30%), Positives = 133/258 (51%), Gaps = 15/258 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+ F VLHG  GEDG VQ +L+L  + Y  +G+LASA  MDK  +K++    G+PV  
Sbjct: 118 QVDVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGE 177

Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            +++ +    +      +  P  +KP +GGSS+GI  +   +     +  +   ++ +++
Sbjct: 178 ELILFQPRELTAEEKERLGLPVFVKPARGGSSIGISKVDSWEEFDAAIDLAF--SNDNKV 235

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVLPAK 218
           ++E  + G E+ CGV+  A   +        +        FY ++ KY     +  +PA 
Sbjct: 236 IVEAMIHGAEVECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAP 295

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P +  KE+++LA     A+GC GI+R DF            EIN  PG TP+S++P+M 
Sbjct: 296 LPAETIKEIRQLAIRTFNALGCDGIARVDFFATE--NGPVLNEINTMPGFTPISMYPKMF 353

Query: 279 AYAGYSFRELLLWMVEDA 296
           A  G SF +L+  ++  A
Sbjct: 354 AAEGVSFGDLVSALIARA 371



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45
          +AVL GG S+E  VS  S  A    L+   ++V  + +  +   V
Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWV 57


>gi|257792714|ref|YP_003183320.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325831132|ref|ZP_08164456.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
 gi|257476611|gb|ACV56931.1| D-alanine--D-alanine ligase [Eggerthella lenta DSM 2243]
 gi|325487053|gb|EGC89499.1| D-ala D-ala ligase N-terminal domain protein [Eggerthella sp. HGA1]
          Length = 328

 Score =  116 bits (289), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRTVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK--------------------MRSKQVV 100
             GEDG VQ++LE + +P+  S       + DK                       + V 
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +               ++ + +   P  +KP  G S+ G+  +     +   +  S + 
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAV--SDAL 180

Query: 161 NHGDQLLIEQYVDGIELTCGV------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +  D ++IEQ++DG+E+T  V                      D  +     +      V
Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240

Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            PA +  D      I  E++R A    +A   R ++R D ++D    +   LE++V P +
Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQAR--VLEVDVSPSL 298

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
              S F      +G S   +L  +V
Sbjct: 299 AESSPFSLACEASGLSLSGVLNELV 323


>gi|46190210|ref|ZP_00121771.2| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bifidobacterium longum DJO10A]
 gi|189439975|ref|YP_001955056.1| D-alanyl-alanine synthetase A [Bifidobacterium longum DJO10A]
 gi|259645162|sp|B3DTT9|DDL_BIFLD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189428410|gb|ACD98558.1| D-alanine-D-alanine ligase [Bifidobacterium longum DJO10A]
          Length = 395

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGVGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|92116839|ref|YP_576568.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
 gi|91799733|gb|ABE62108.1| D-alanine--D-alanine ligase [Nitrobacter hamburgensis X14]
          Length = 340

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 81/326 (24%), Positives = 131/326 (40%), Gaps = 36/326 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP--DL 53
           + +L GG + ER VS++S +A   AL +A   +   D+   V  V     L H +P  D 
Sbjct: 3   ITILFGGSNKERLVSVASAQALHRALPEA--DLWFWDIRDDVHNVRSEVLLDHARPFEDE 60

Query: 54  AFNV-----------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                      LHG   E+G +QA+ EL  IP+T SG  AS L+
Sbjct: 61  FVPGGTSMPFEQALDRARAEGRVLVLGLHGGRAENGELQAMCELRGIPFTGSGSAASHLA 120

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            DK+ +K+  +  GV     + +    +D         + KP + GSS G+I +   Q  
Sbjct: 121 FDKVAAKRFAALAGVTTPAGVPL--EEIDRAFAEHGRLIAKPARDGSSYGLIFVNAKQDF 178

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 + +  +  +  +        +     G          VP    + Y  KY +  
Sbjct: 179 VAVRHAAKTEEYVIEPFVSGIEATCGVLERSDGTVVALPPVEIVPAEGRFDYASKYLAQT 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P +    I   +   A  AH+A+ CRG SR+DF+      +  +LE N  PG+T 
Sbjct: 239 TQEICPGRFSSSITARIMDHALRAHRALSCRGYSRTDFIVTGK--EPVYLETNTLPGLTA 296

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S++P+     G  F + L   +  A
Sbjct: 297 ASLYPKALKAQGIGFADFLRDQIVLA 322


>gi|291456019|ref|ZP_06595409.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
 gi|291382428|gb|EFE89946.1| D-alanine--D-alanine ligase [Bifidobacterium breve DSM 20213]
          Length = 397

 Score =  115 bits (288), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 80/280 (28%), Positives = 136/280 (48%), Gaps = 25/280 (8%)

Query: 39  DRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           D  +  VL  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K
Sbjct: 115 DPEIHHVLTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTK 174

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQS 149
            V+++ G+P  P I+V+     +  +        ++ P  +KP + GSS G+  + K + 
Sbjct: 175 VVLNAAGIPTAPGIMVDARAFTAADVVAQIEVAGLAYPLFVKPSRAGSSFGVTKVDKAED 234

Query: 150 IPL-----DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +           +++  H  ++LIEQ +DG E+ C V+   + D  E + P      ++ 
Sbjct: 235 LETQQDRVAAAIATAGEHDWKVLIEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQN 294

Query: 205 KYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                +              +PA +P+ + ++V+ +A  A +A+   G+SR D    P  
Sbjct: 295 DDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-D 353

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             V   EIN  PG TP+S++P+     G  + EL+  ++E
Sbjct: 354 GTVMVNEINTMPGFTPISMYPKAWDATGVGYTELITRLIE 393



 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 22/51 (43%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S     +A++   F+   + + +    ++    P
Sbjct: 8  IVVLYGGRADEHSISCISTAGVLAAMDTERFEPIPVGITKDGKWIIDGEDP 58


>gi|260578997|ref|ZP_05846899.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
 gi|258602862|gb|EEW16137.1| D-alanine--D-alanine ligase [Corynebacterium jeikeium ATCC 43734]
          Length = 373

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 79/258 (30%), Positives = 133/258 (51%), Gaps = 15/258 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           + D+ F VLHG  GEDG VQ +L+L  + Y  +G+LASA  MDK  +K++    G+PV  
Sbjct: 118 QVDVVFPVLHGVNGEDGTVQGVLDLAGVRYVGNGVLASAAGMDKDFTKRLAREAGIPVGE 177

Query: 110 SILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
            +++ +    +      +  P  +KP +GGSS+GI  +   +     +  +   +H +++
Sbjct: 178 ELILLQPRELTAEEKARLGLPVFVKPARGGSSIGISKVDSWEEFDAAVDLAF--SHDNKV 235

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLNSTHVLPAK 218
           ++E  + G E+ CGV+  A   +        +        FY ++ KY     +  +PA 
Sbjct: 236 IVEAMIHGAEVECGVLQHADGSIVSSVPAMLNGTEDGAEGFYGFDAKYVDSTVSATIPAP 295

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P +  KE+++LA     A+GC GI+R DF            EIN  PG TP+S++P+M 
Sbjct: 296 LPAETLKEIRQLAIRTFNALGCDGIARVDFFATE--NGPVLNEINTMPGFTPISMYPKMF 353

Query: 279 AYAGYSFRELLLWMVEDA 296
           A  G SF +L+  ++  A
Sbjct: 354 AADGVSFGDLVSALIARA 371



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45
          +AVL GG S+E  VS  S  A    L+   ++V  + +  +   V
Sbjct: 13 VAVLYGGQSTEHSVSCISAGAVIDHLDPEIYEVVPVGITEAGAWV 57


>gi|146292900|ref|YP_001183324.1| D-alanyl-alanine synthetase A [Shewanella putrefaciens CN-32]
 gi|189083054|sp|A4Y6E2|DDL_SHEPC RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|145564590|gb|ABP75525.1| D-alanine--D-alanine ligase [Shewanella putrefaciens CN-32]
          Length = 337

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     S+L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++         +         IK    GSS+G   +    S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210
           +   ++ +   +++E+ +   EL   V       V  +        +    +        
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++  
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331


>gi|319426570|gb|ADV54644.1| D-alanine/D-alanine ligase [Shewanella putrefaciens 200]
          Length = 337

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 133/327 (40%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     S+L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDDCELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++         +         IK    GSS+G   +    S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALADWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210
           +   ++ +   +++E+ +   EL   V       V  +        +    +        
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++  
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINS 331


>gi|317481946|ref|ZP_07940971.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688440|ref|YP_004208174.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
 gi|322690460|ref|YP_004220030.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|316916513|gb|EFV37910.1| D-alanine-D-alanine ligase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455316|dbj|BAJ65938.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. longum
           JCM 1217]
 gi|320459776|dbj|BAJ70396.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           157F]
          Length = 395

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|227545759|ref|ZP_03975808.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|227213875|gb|EEI81714.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
          Length = 397

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 129 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 188

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 189 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 248

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 249 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 308

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 309 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 367

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 368 TPISMYPKAWDATGVSYTELITRLIE 393



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 8  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 58


>gi|23464945|ref|NP_695548.1| D-alanyl-alanine synthetase A [Bifidobacterium longum NCC2705]
 gi|39930901|sp|Q8G7C4|DDL_BIFLO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|23325541|gb|AAN24184.1| D-alanine--D-alanine ligase [Bifidobacterium longum NCC2705]
          Length = 428

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 160 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 219

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 220 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 279

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 280 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 339

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 340 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 398

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 399 TPISMYPKAWDATGVSYTELITRLIE 424



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 39 VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 89


>gi|291517448|emb|CBK71064.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           F8]
          Length = 395

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYAGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|24373771|ref|NP_717814.1| D-alanyl-alanine synthetase A [Shewanella oneidensis MR-1]
 gi|39930896|sp|Q8EEZ2|DDL_SHEON RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|24348157|gb|AAN55258.1|AE015664_1 D-alanine--D-alanine ligase [Shewanella oneidensis MR-1]
          Length = 336

 Score =  115 bits (287), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 67/325 (20%), Positives = 123/325 (37%), Gaps = 33/325 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +   F V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQFNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDESKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150
           S+ G+P  P I +N++         +         +K    GSS+G   + +       +
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALEKWGSIFVKAASQGSSVGCYKVDEASKVLGVL 187

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 +        +   +    +    G +                 +  +   SS  
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVIATLPGEIICDSNTFYTFDEKYAKSSKA 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +P DI  +++  A  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQNVPTDISDQIRAYAIKAFKGMKLRHLSRIDFFLTA-DNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVED 295
           +S+FP+M    G+ F + L  ++  
Sbjct: 307 ISMFPKMLQNHGHDFTQYLSLVINS 331


>gi|114047700|ref|YP_738250.1| D-alanyl-alanine synthetase A [Shewanella sp. MR-7]
 gi|123326497|sp|Q0HUL2|DDL_SHESR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|113889142|gb|ABI43193.1| D-alanine--D-alanine ligase [Shewanella sp. MR-7]
          Length = 336

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 67/324 (20%), Positives = 122/324 (37%), Gaps = 33/324 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHL------------ 49
           +L GG S+E ++SL S     ++L +     V ++ +D+      A              
Sbjct: 8   LLCGGGSAEHDISLLSANYFETSLAKSEQVNVLRVVLDKFGQYQTAAGDDCELTNNREIR 67

Query: 50  ---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRF------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS----I 150
           S+ G+P  P I +N++         +         +K    GSS+G   +         +
Sbjct: 128 SALGIPNTPYIFLNQYDDEAIAQTQAALENWGSIFVKAASQGSSVGCYKVDDSSKVAGVL 187

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 +        +   +    +    G +                 +  +   SS  
Sbjct: 188 KDAFGYAPYVIVEKTIKARELEVAVYEYQGEVVATLPGEIICDSNTFYTFDEKYAKSSKA 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            T V+   +P DI  +++  A  A + +  R +SR DF       ++   EIN  PG TP
Sbjct: 248 RTDVVAQNVPADISDQIRAYAIKAFKGMKLRHLSRIDFFLT-QDNEILLNEINTFPGSTP 306

Query: 271 VSIFPEMAAYAGYSFRELLLWMVE 294
           +S+FP+M    G+ F E L  +++
Sbjct: 307 ISMFPKMLQNHGHDFTEYLSLVIK 330


>gi|213691237|ref|YP_002321823.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|259645163|sp|B7GU04|DDL_BIFLI RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|213522698|gb|ACJ51445.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
 gi|320457299|dbj|BAJ67920.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           ATCC 15697]
          Length = 395

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 80/281 (28%), Positives = 134/281 (47%), Gaps = 25/281 (8%)

Query: 38  VDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            D  +   L  L   D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +
Sbjct: 112 PDPEMHHALTSLGHVDAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYT 171

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV----- 143
           K V+ + G+P  P + V+     +  ++        + P  IKP + GSS G+       
Sbjct: 172 KVVLGAAGIPTAPGVTVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKAD 231

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            ++ Q   L    +++  H  ++L+EQ +DG E+ C V+   + D  E + P      ++
Sbjct: 232 DRETQQDRLAAAIATAGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQ 291

Query: 204 LKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                 +              +PA +P+ + ++V+ +A  A +A+   G+SR D    P 
Sbjct: 292 NDDQFYDFDSKYMDASASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP- 350

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
              V   EIN  PG TP+S++P+     G S+ EL+  ++E
Sbjct: 351 DGTVMVNEINTMPGFTPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|120599029|ref|YP_963603.1| D-alanyl-alanine synthetase A [Shewanella sp. W3-18-1]
 gi|189083057|sp|A1RK54|DDL_SHESW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|120559122|gb|ABM25049.1| D-alanine--D-alanine ligase [Shewanella sp. W3-18-1]
          Length = 337

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 69/327 (21%), Positives = 134/327 (40%), Gaps = 37/327 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDR------------------SVG 43
           +L GG S+E ++SL S     S+L +   F V ++++D+                   + 
Sbjct: 8   LLCGGGSAEHDISLMSANYFESSLAKSDQFSVLRVELDKLGQYRTAAGDECELTNNREIR 67

Query: 44  LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                  P   D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FRDETKAPWPVDYVIPCIHGYPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I ++++         +         IK    GSS+G   +    S  +  
Sbjct: 128 SALGIPNTPYIFLHQYDDEAISQAQTALANWGSIFIKAASQGSSVGCYKVDD--SSKVAQ 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN---- 210
           +   ++ +   +++E+ +   EL   V       V  +        +    +        
Sbjct: 186 VLKDAFGYAPYVVVEKTIKARELEVAVYEYNGEIVATLPGEIICDTNTFYTFDEKYAKSS 245

Query: 211 --STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
              T V+   + +++ ++++  A  A + +  R +SR DF       ++   EIN  PG 
Sbjct: 246 KARTDVVAKDVSVELSEQIRAYAIKAFKGMKLRHLSRIDFFLTAE-NEILLNEINTFPGS 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVED 295
           TP+S+FP+M    G+ F E L  ++ +
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSLVINN 331


>gi|296453460|ref|YP_003660603.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
 gi|296182891|gb|ADG99772.1| D-alanine--D-alanine ligase [Bifidobacterium longum subsp. longum
           JDM301]
          Length = 395

 Score =  115 bits (287), Expect = 9e-24,   Method: Composition-based stats.
 Identities = 77/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLGAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  IKP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAKIEDAGLTYPLFIKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGREIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|289643153|ref|ZP_06475282.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
 gi|289507045|gb|EFD28015.1| D-alanine/D-alanine ligase [Frankia symbiont of Datisca glomerata]
          Length = 385

 Score =  115 bits (287), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 83/259 (32%), Positives = 132/259 (50%), Gaps = 16/259 (6%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+ F +LHG FGEDG VQ +LE+  +PY  SG+ ASA +MDK   K ++++ G+ + P  
Sbjct: 123 DVVFPLLHGPFGEDGTVQGLLEMAAVPYVGSGVFASAAAMDKQYMKILLAAAGLDIGPYT 182

Query: 112 LVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++        D +  +  P  +KP +GGSS+GI  +     +   L  + +     ++L+
Sbjct: 183 VLRAGQALSGDDRERLGLPVFVKPARGGSSIGISRVDAWDDLATALKAARAV--DPKVLV 240

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELKYSSLNSTHVLPAK 218
           E  V G E+ CGV+G       E ++P             FY +E KY S  +   +PA 
Sbjct: 241 EAAVVGREVECGVLGSLDGGGPEASLPAEVTVASSAGSAGFYDFEAKYLSDAARFDVPAN 300

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +P ++   V+++A  A  A+ C G++R D    P    V   E+N  PG TP S+FP M 
Sbjct: 301 LPAEVTAAVRQIAVRAFVALDCAGLARVDVFVRP-DGSVVVNEVNTMPGFTPTSMFPRMW 359

Query: 279 AYAGYSFRELLLWMVEDAS 297
           A  G  +  L+  +V  A+
Sbjct: 360 AATGLDYPRLVDRLVALAT 378



 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 16/53 (30%), Positives = 24/53 (45%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53
          +AVL GG S+E  +S  S  +   AL+   + V  + +      VL    PD 
Sbjct: 11 IAVLYGGRSTEHAISCVSAGSVLRALDRRRYDVVAVGITPDGRWVLGPDDPDA 63


>gi|192292409|ref|YP_001993014.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
 gi|192286158|gb|ACF02539.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris TIE-1]
          Length = 329

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 85/327 (25%), Positives = 132/327 (40%), Gaps = 41/327 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK-------VSQIDVDRSVGLVLAHLKP---- 51
           +L GG S ER VS++S +A  SAL DA          V  +    S   +LAH +P    
Sbjct: 5   ILFGGTSKERLVSVASAQALHSALPDADLWFWNDDDCVHAV----SAQALLAHARPFEEA 60

Query: 52  ---------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                          D A          LHG   E+G +QA+ EL  +P+T SG  AS L
Sbjct: 61  FVPDGEDIGPLETALDRAAAEQRLLVLGLHGGVAENGELQAMCELRRVPFTGSGSAASHL 120

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + DK+ +K+  S  GV     I +     ++        + KP   GSS G+  I   Q 
Sbjct: 121 AFDKVAAKRFASIAGVRTVTGIAL--ADAEAALEAHGRLIAKPACDGSSYGLFFINAKQD 178

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +      + + ++  +  +        +     G          VP    + Y  KY + 
Sbjct: 179 LVAVRHAAKTEDYLIEPFVAGVEATCGVLEAEDGSLRALPPIEIVPADGGFDYTAKYLAK 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P +   +I   +   A  AH+ + CRG SRSDF+         +LE N  PG+T
Sbjct: 239 STQEICPGRFAPEIASAIMDYAVRAHRVMSCRGYSRSDFIVGKDG--PIFLETNTLPGLT 296

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S++P+     G  F + L   +  A
Sbjct: 297 KASLYPKALNALGIPFVDFLRGQIALA 323


>gi|254994496|ref|ZP_05276686.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064]
          Length = 318

 Score =  114 bits (286), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 120/256 (46%), Gaps = 13/256 (5%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----- 107
           + F +LHG  GEDG VQ + E+L IPY  +G+LAS+ +MDK+  K++ +  G+P      
Sbjct: 48  VVFPLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVA 107

Query: 108 ----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                          + + +++ P  +KP   GSS+GI      + +   + ++  ++  
Sbjct: 108 VRLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELADAMTEAFLYDRR 167

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK---SDFYSYELKYSSLNSTHVLPAKIP 220
             +        IE+           V    +P+   + FY Y+ KY   N+  ++P ++ 
Sbjct: 168 VVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPTEVD 227

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P +   
Sbjct: 228 PEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQE 286

Query: 281 AGYSFRELLLWMVEDA 296
            G  +  L+  +V+ A
Sbjct: 287 TGLPYGALIERLVDLA 302


>gi|289676716|ref|ZP_06497606.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
           FF5]
          Length = 264

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 72/251 (28%), Positives = 131/251 (52%), Gaps = 10/251 (3%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + F ++HG FGEDG +Q +L +L +P+  + +L+SA+ MDK  +K+++   G+ V P  +
Sbjct: 1   VVFPLIHGAFGEDGALQGLLRMLAVPFVGADVLSSAVCMDKDVTKRLLRDAGITVAPFRV 60

Query: 113 VNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           ++R       ++   +  P  IKP   GSS+G  V K           +  +    +LLI
Sbjct: 61  LSRGESLSFTEAADQLGLPMFIKPANQGSSVG--VSKVSDEAGFAAALALGFEFDHKLLI 118

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS---LNSTHVLPAKIPLDIYK 225
           EQ + G E+ C V+G+  + V+      ++   Y           +   +PA++P D+  
Sbjct: 119 EQGIVGREVECAVLGNVDVQVSVCGEVIANDEFYAYDTKYLNGDQARIAIPAELPADLSD 178

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           +V+ +A  A++ +GC G+SR DF      R +   E+N  PG T +S++P++   +G S+
Sbjct: 179 QVREVALQAYKVLGCAGLSRVDFFVTE-GRDIIINEVNTLPGFTSISMYPKLWQASGLSY 237

Query: 286 RELLLWMVEDA 296
            EL+  ++  A
Sbjct: 238 AELIHRLIVLA 248


>gi|86749124|ref|YP_485620.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
 gi|86572152|gb|ABD06709.1| D-alanine--D-alanine ligase [Rhodopseudomonas palustris HaA2]
          Length = 329

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 86/325 (26%), Positives = 137/325 (42%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV-----LAHLKP------ 51
           +L GG S ER VS++S +A  +AL DA  ++   + D SV  V     LAH +P      
Sbjct: 5   ILFGGTSKERLVSVASAQALHAALPDA--ELWFWNDDDSVHAVTAEALLAHARPFEEAFR 62

Query: 52  -------------DLA-------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                        D A          LHG   E+G +QA+ E+  +P+T SG  AS L+ 
Sbjct: 63  PAGENIGPLERALDRAAIEQRLLVLGLHGGVAENGELQAMCEMRGVPFTGSGAAASHLAF 122

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           DK+ +K+  +  GV     I +     ++        + KP + GSS G+  I   Q + 
Sbjct: 123 DKVAAKRFAAIAGVRAPAGIAL--AEAEAALAAHGRLIAKPARDGSSYGLFFINAKQDLV 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S ++  +  +        +     G          VP    + Y  KY + ++
Sbjct: 181 AVRDAARSEDYLIEPFVSGIEATCGVLEQADGSLLALPPIEIVPADGGFDYTAKYLAKST 240

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P +    I   +   A  AH+ +GCRG SRSDF+         +LE N  PG+T  
Sbjct: 241 QEICPGRFAPQISARIMEDAVKAHRVMGCRGYSRSDFIVVADG--PIFLETNTLPGLTKA 298

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDA 296
           S++P+     G +F + L   +  A
Sbjct: 299 SLYPKALQAQGIAFVDFLHGQIALA 323


>gi|158522759|ref|YP_001530629.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
 gi|158511585|gb|ABW68552.1| D-alanine--D-alanine ligase [Desulfococcus oleovorans Hxd3]
          Length = 338

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 79/299 (26%), Positives = 126/299 (42%), Gaps = 23/299 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG--NFGEDGLVQAILELL 75
            A  + L + GF V  I+ D    + L   +   DL FN   G         V A+LE+L
Sbjct: 34  AAMTAHLRECGFDVIPIEADPDAYIKLYENRDSIDLVFNYSIGIYGQARYAQVPAMLEML 93

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT SG L  AL +DK R +QV+S+C VPV  S +        Q  ++ P ++KP+  
Sbjct: 94  RLPYTGSGPLTQALILDKARMQQVLSACNVPVLCSQVFETGDEPLQSGLAFPLIVKPVAQ 153

Query: 136 GSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI      +       Q        G+  L++ ++DG E +  +MG+       I 
Sbjct: 154 GSSAGITSDSVVRDEAALYRQVGRVMATFGEPALVQPFLDGREFSIPMMGNPPEIFPIIE 213

Query: 194 VPKSDFYSYELKY-----------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              S       +             + +   + PA +   + + +++    A +A+G   
Sbjct: 214 PDFSRLPEGYARIDSLEVKWIFEEQAESHHLICPAPVAPGLQERLEQTVRAAWKALGICD 273

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSFRELLLWMVEDA 296
             R D   D      + +++N  PGM P      S FP  A  AG  ++ LL  ++E A
Sbjct: 274 WCRIDLRCDMA-GTPYVIDVNSPPGMIPPEGSMTSYFPMSARAAGIDYQGLLKRLIETA 331


>gi|294627726|ref|ZP_06706308.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292598078|gb|EFF42233.1| D-alanylalanine synthetase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
          Length = 265

 Score =  114 bits (285), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 87/266 (32%), Positives = 132/266 (49%), Gaps = 11/266 (4%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
           DV   +   L     D  FNVL  H   GED +VQ + E   +PYT S +L SALSMDK+
Sbjct: 2   DVIGQLSKPLVAQHFDRVFNVLLGHNGGGEDDIVQGLTEPFGVPYTGSDVLGSALSMDKI 61

Query: 95  RSKQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           R+KQV  S G+                   +   I  P ++KP   GSS+G+  +     
Sbjct: 62  RTKQVWLSLGLSTPRYARLAAGASAEDIHAAARQIGLPIIVKPANEGSSVGVSRVFDQAQ 121

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   +  ++   +   LL+EQ ++G ELT  V+GD +L      VPK  +Y Y  KY + 
Sbjct: 122 LEEAVTLAA--RYDGALLMEQLIEGDELTVAVLGDTALPSI-RIVPKGQWYDYNAKYIAE 178

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++ ++ P     +   ++++LA  A  A GCRG  R D + D  S +++ LE+N  PGMT
Sbjct: 179 DTQYLCPGL-EGEAEAQIRQLALDAFHAAGCRGWGRVDVMRDGSSGQLYLLEVNTAPGMT 237

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVED 295
             S+ P+ A   G  F  L+  ++E 
Sbjct: 238 SHSLVPKAARQLGIDFETLVWRVLEQ 263


>gi|229089127|ref|ZP_04220426.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
 gi|228694192|gb|EEL47869.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-44]
          Length = 228

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/195 (24%), Positives = 91/195 (46%), Gaps = 5/195 (2%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +               + ++  P  +KP   GSS+GI   K  + +     ++      
Sbjct: 23  FIRSTWEKDRETAYEKVEEVLGYPCFVKPANLGSSVGINKCKDREELDNAFEEAF--QFD 80

Query: 164 DQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            ++++E+ + G E+  GV    +    V    VPK DFY Y+ KY   ++  ++PA++  
Sbjct: 81  RKIIVEENIVGREVEVGVLGNDEPKCSVVGEIVPKKDFYDYKSKYIDGDTALIIPAEMTE 140

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +    ++R A +A Q++   G++R+DF       +V+  E+N  PG TP S+FP +  + 
Sbjct: 141 EESDVIKRDAIIAFQSLDSAGLTRADFFLT-KDGEVYINEVNTMPGFTPFSMFPLLWQHT 199

Query: 282 GYSFRELLLWMVEDA 296
              + EL+  ++  A
Sbjct: 200 NLPYPELIEELIRLA 214


>gi|227504431|ref|ZP_03934480.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
 gi|227199079|gb|EEI79127.1| D-alanyl-alanine synthetase A [Corynebacterium striatum ATCC 6940]
          Length = 326

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 84/329 (25%), Positives = 144/329 (43%), Gaps = 56/329 (17%)

Query: 23  ASALEDAGFKVSQIDVDRSVGL-------------VLAH--------------------- 48
              L+ A + V  I + +                 VL                       
Sbjct: 1   MKHLDPAKYTVVPIGITKDGQWTPGTMEGLEIVDGVLPEVTMGDELALSLNPETKGRFHN 60

Query: 49  -------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
                   + D+   VLHG +GEDG VQ + EL +IPY  +G+LAS+  MDK  +K++++
Sbjct: 61  VTQHSHFAEVDVIIPVLHGPYGEDGTVQGLFELSDIPYVGAGVLASSAGMDKEFTKKLLT 120

Query: 102 SCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           + G+PV P +++   T  S      +  P  +KP +GGSS+G+  +         +  + 
Sbjct: 121 AEGLPVAPEVILKGRTELSADEKAQLGLPVFVKPARGGSSIGVSKVTDWAEFSRAVEVAF 180

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD--------FYSYELKYSSLN 210
                +++L+E  + G E+  GV+  A   V      + +        FY ++ KY    
Sbjct: 181 --ESDNKVLVEPEIVGAEVEIGVLEYADGSVIASVPAQLNGIEEAEEGFYDFDAKYIDEG 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
            +  +PA +  D+ + ++  A  A +A+GC G+SR DF         +  EIN  PG TP
Sbjct: 239 VSAQIPAPLDPDLIQTLRETAVSAFRALGCEGLSRVDFFVTK--DAFYINEINTFPGFTP 296

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +S++P++ A  G  +  LL  ++E A   
Sbjct: 297 ISMYPQVLAATGVDYAALLDALIEGAMAR 325


>gi|75675248|ref|YP_317669.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
 gi|74420118|gb|ABA04317.1| D-alanine--D-alanine ligase [Nitrobacter winogradskyi Nb-255]
          Length = 330

 Score =  114 bits (284), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 135/324 (41%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVS-----QIDVDRS-------------- 41
           + +L GG + ER VS++S +A   AL +A           +DV                 
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNLRDEIVDVRSETLRDHARPFEDEFV 62

Query: 42  -------VGLVLAHLKP-DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                  +   L   +  D    + LHG   E+G +QA+ EL  IP+T SG  AS L+ D
Sbjct: 63  PGGSGAPLERALDRARAEDRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+ V+S GVP    +L+    +D         V KP   GSS G+I +   Q I  
Sbjct: 123 KVAAKRFVASAGVPTPAHVLL--EDIDHALAEHGRLVAKPACDGSSYGLIFVNAPQDIVT 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + + ++  +  +        +     G          VP    + Y  KY +  + 
Sbjct: 181 VREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKYLAKTTQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P +   +I  ++   +  AH+A+ CRG SR+DF+         +LE N  PG+T  S
Sbjct: 241 EICPGRFSPEIAAQIMDHSLRAHRALSCRGYSRTDFIVT--GNGPIYLETNTLPGLTAAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++P+     G  F + L   +  A
Sbjct: 299 LYPKALHAQGVGFADFLRDQIVLA 322


>gi|317489001|ref|ZP_07947528.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
 gi|316911868|gb|EFV33450.1| D-alanine-D-alanine ligase [Eggerthella sp. 1_3_56FAA]
          Length = 328

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 80/325 (24%), Positives = 134/325 (41%), Gaps = 36/325 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+ERE+SL+S K   +ALE+AG +   +D    +   L   +PD+ FN LHG
Sbjct: 3   VAVLTGGSSTERELSLASAKNVCAALEEAGHRKVLLDASSDLVSALRVERPDVCFNALHG 62

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK--------------------MRSKQVV 100
             GEDG VQ++LE + +P+  S       + DK                       + V 
Sbjct: 63  KLGEDGTVQSLLEFVGVPFVGSPSSVCRRAWDKSSLGSEMAAYRAITGDEPTASWPQGVC 122

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            +               ++ + +   P  +KP  G S+ G+  +     +   +  S + 
Sbjct: 123 IAREAFESMGAATAFDLVEDRVIGGYPVAVKPAHGVSASGVRRVDSVDQLGEAV--SDAL 180

Query: 161 NHGDQLLIEQYVDGIELTCGV------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +  D ++IEQ++DG+E+T  V                      D  +     +      V
Sbjct: 181 SFDDAVIIEQWIDGVEVTVPVLGSGWDAYALPPVEIVAKEGFCDTVACRTPGAVELFAPV 240

Query: 215 LPAKIPLD------IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            PA +  D      I  E++R A    +A   R ++R D ++D    +   LE++V P +
Sbjct: 241 RPASLSNDEADAQAIRAEIERAALEVCRAYQVRDLARVDLVWDGAQAR--VLEVDVSPSL 298

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
              S F      +G S   +L  +V
Sbjct: 299 AESSPFSLACEASGLSLSGVLNELV 323


>gi|91793706|ref|YP_563357.1| D-alanyl-alanine synthetase A [Shewanella denitrificans OS217]
 gi|122968653|sp|Q12LP2|DDL_SHEDO RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|91715708|gb|ABE55634.1| D-alanine--D-alanine ligase [Shewanella denitrificans OS217]
          Length = 335

 Score =  113 bits (283), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 119/325 (36%), Gaps = 37/325 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVG--------------LVLA 47
           +L GG  +E ++SL S +   ++L +   F V  + +D+                   + 
Sbjct: 8   LLCGGGGAEHDISLMSARFFETSLAKSDQFSVLTLTLDKQGRYHTQDGNLCSLTNRREIR 67

Query: 48  HLKP-------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              P       D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   
Sbjct: 68  FEDPSIAPWAVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWF 127

Query: 101 ------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 ++  + +            +         IK    GSS+G   +    +I    
Sbjct: 128 SALGVPNTPYIFLHQFDQEAIAQTQAAFDTWGSVFIKAASQGSSVGCYKVDVRDNI--AK 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +   ++ +   +++E+ +   EL   V       +  +        +    +    +   
Sbjct: 186 VLEEAFGYAPYVVVEKTIKARELEVAVYEYQGDIIATLPGEIICDTNKFYSFDEKYAKDS 245

Query: 215 LPAKI------PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                         +  ++Q  A  A + +  R +SR DF       ++   EIN  PG+
Sbjct: 246 KARTDVVASNLSPKLCLQIQDYAIKAFKGMKLRHLSRIDFFLT-QDDEILLNEINTFPGL 304

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMV 293
           TP+S+FP+M    G+ F E L  ++
Sbjct: 305 TPISMFPKMLQNHGHDFTEYLSDVI 329


>gi|330862508|emb|CBX72665.1| D-alanine--D-alanine ligase A [Yersinia enterocolitica W22703]
          Length = 301

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 73/268 (27%), Positives = 125/268 (46%), Gaps = 14/268 (5%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +       LA L  D+ F ++HG  GEDG +Q +L +  IP+  SG+L SA+SMDK  +K
Sbjct: 23  IATDNASALAQL--DVIFPIVHGTLGEDGSLQGLLRMANIPFVGSGVLGSAVSMDKDITK 80

Query: 98  QVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++   G+ + P I        N         +  P  IKP   GSS+G+  ++      
Sbjct: 81  RLLRDAGLNIAPFITLTRANKDNYRFEQVTAKLGLPLFIKPANQGSSVGVSKVRNAYEYE 140

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  +   +   ++L+E  + G E+ C VMG+ +   +           Y      +N 
Sbjct: 141 QAVALAF--DFDHKVLVESAIVGREIECAVMGNDNPQASLCGEVVISDEFYSYDTKYINE 198

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                ++PA I   +   ++ +A  A +A+ CRG++R D    P   +V   EIN  PG 
Sbjct: 199 TGAKVIIPASIGSAVSDNIRAVALAAFRALECRGMARVDVFLTP-DNRVIINEINTLPGF 257

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           T +S++P++    G    EL+  ++E A
Sbjct: 258 TNISMYPKLWRATGVGSTELITTLIELA 285


>gi|329848165|ref|ZP_08263193.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
 gi|328843228|gb|EGF92797.1| D-ala D-ala ligase protein [Asticcacaulis biprosthecum C19]
          Length = 329

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 131/323 (40%), Gaps = 33/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVS----QIDVDRSVGLVLAHLKPDLAFNV- 57
           +L GG S ER VS++S +A A AL DA          ++V     L       +L F   
Sbjct: 5   ILFGGTSRERLVSVASAQALAHALPDADLWFWDHDGTVNVTSPAALHAHDRPFELPFRAD 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   LHG   E+G  Q + E   +P+T SG  AS L+ DK
Sbjct: 65  GILIGDMAGSLDLAVHENRVLVLGLHGGSAENGEFQVLAEARGVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             +K+     GV    S+      +D         + KP + GSS G+I +   Q +   
Sbjct: 125 TAAKRFAGLAGVHSPSSVS--LDELDEAFSHYGKLIAKPAQDGSSFGLIYVNSSQDLAAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++ +  +  +  +        +     G          VP    + Y+ KY +  +  
Sbjct: 183 RREAKTTAYVIEPFVTGPEATCGVLEQADGSLIALPPVEIVPAEGTFDYKSKYLAAATQE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+   +I  +++ L+  AH+A+ CRG SRSDF+         +LE N  PG+T  S+
Sbjct: 243 ICPARFASEIMAQLRDLSIKAHKAMSCRGYSRSDFII--SDHGPVYLETNTLPGLTKASL 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+     G  F + L   +E A
Sbjct: 301 YPKSLKAQGIEFVDFLNGQIELA 323


>gi|239622538|ref|ZP_04665569.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
 gi|239514535|gb|EEQ54402.1| D-alanine-D-alanine ligase [Bifidobacterium longum subsp. infantis
           CCUG 52486]
          Length = 395

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 76/266 (28%), Positives = 130/266 (48%), Gaps = 24/266 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D    VLHG +GEDG VQ +LE++ +PY   G+ ASA  MDK  +K V+ + G+P  P +
Sbjct: 127 DAVLPVLHGPYGEDGTVQGLLEMMGVPYVGCGVFASAACMDKHYTKVVLDAAGIPTAPGV 186

Query: 112 LVNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSS 158
            V+     +  ++        + P  +KP + GSS G+        ++ Q   L    ++
Sbjct: 187 TVDARNFTAADVLAEIEDAGLTYPLFVKPSRAGSSFGVTKVEKADDRETQQDRLAAAIAT 246

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS------- 211
           +  H  ++L+EQ +DG E+ C V+   + D  E + P      ++      +        
Sbjct: 247 AGEHDWKVLVEQGIDGHEIECAVLCPKAGDEPEASWPGEIVLDHQNDDQFYDFDSKYMDA 306

Query: 212 ---THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                 +PA +P+ + ++V+ +A  A +A+   G+SR D    P    V   EIN  PG 
Sbjct: 307 SASHVEVPANLPVSVLEDVRDVARRAFKAVDGAGLSRVDTFVTP-DGTVMVNEINTMPGF 365

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVE 294
           TP+S++P+     G S+ EL+  ++E
Sbjct: 366 TPISMYPKAWDATGVSYTELITRLIE 391



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 10/51 (19%), Positives = 21/51 (41%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP 51
          + VL GG + E  +S  S      A++   F+   + + +    ++    P
Sbjct: 6  VVVLYGGRADEHSISCISTAGVLGAMDTERFEPIPVGITKDGKWIINGEDP 56


>gi|322705322|gb|EFY96909.1| hypothetical protein MAA_07722 [Metarhizium anisopliae ARSEF 23]
          Length = 361

 Score =  113 bits (281), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 75/308 (24%), Positives = 113/308 (36%), Gaps = 31/308 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDG--LVQAILEL 74
           KA A+AL+  G  V+ +    S+   LA   H   DL FN+  G  G      V A+LE 
Sbjct: 41  KAVAAALQGLGHDVTLVPGVSSLVEHLAAGQHKNWDLVFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVI 130
             IPYT S     AL  +K  +K ++   GVP  P +++          +      P  +
Sbjct: 101 FLIPYTFSDAATMALCQNKANTKIILEHHGVPNAPFMVIPSEHLSLLNHATLPPKYPLFV 160

Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           KP   GSS        +     + L + +  +   G  +L+E ++ G E T  ++G  S 
Sbjct: 161 KPATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSC 220

Query: 188 DVTEIAVPKSDF------YSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLA 231
                               Y+                   +     +     K   ++A
Sbjct: 221 SRVIGIREHIWQTFPENGNGYQATQEFACWKSKLSEGCLLRYNDAHDMDDAHVKAACQVA 280

Query: 232 FLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
                A+GCR   R D  F  D  +     LE+N   G+ P  S  P  A   G SF  L
Sbjct: 281 LDTWTALGCRDAGRVDIRFSSDDANGVPNVLEVNPIAGLLPGHSPLPASAEENGLSFEAL 340

Query: 289 LLWMVEDA 296
           L  ++E A
Sbjct: 341 LTAILESA 348


>gi|212635560|ref|YP_002312085.1| D-alanyl-alanine synthetase A [Shewanella piezotolerans WP3]
 gi|226729272|sp|B8CMV8|DDL_SHEPW RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|212557044|gb|ACJ29498.1| D-alanine--D-alanine ligase [Shewanella piezotolerans WP3]
          Length = 332

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 69/324 (21%), Positives = 126/324 (38%), Gaps = 37/324 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVD---------------------R 40
           +L GG   E  +SL S     ++L     F V ++++D                     R
Sbjct: 8   LLCGGGGDEHAISLLSANYFETSLATLPQFNVLRVELDVNGHYRTAAGESCELNSRRQIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                 A  + D A   +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   
Sbjct: 68  FDADNRAPWEVDFAIPCIHGFPGETGDIQSYFELINLPYFGCKAEASRNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+  +P  P + +N           +  +      +K    GSS+G   I   + +    
Sbjct: 128 SALNIPNTPYLFLNEMSDVSIEQATNALVNWGSIFVKAASQGSSVGCYRIDNQEDV--AS 185

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             + ++ + D +++E+ +   EL   V       V  +        +    +    + + 
Sbjct: 186 TLAQAFTYSDYVIVEKTISARELEVAVYEIDGEIVATVPGEVICSSNNFYTFDEKYAANS 245

Query: 215 LPAKI-----PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                       ++   +++ A  A + +  R +SR DF       +V   EIN  PG+T
Sbjct: 246 KAQTQVVADISKEVSDLIRQYAISAFKGMKLRHLSRIDFFLT-DDGEVLLNEINTFPGLT 304

Query: 270 PVSIFPEMAAYAGYSFRE-LLLWM 292
           P+S+FP+M    G+SF + LL  +
Sbjct: 305 PISMFPKMLQNHGHSFPDYLLSNI 328


>gi|8671343|emb|CAB95026.1| D-alanine-D-alanine ligase [Prochlorococcus marinus]
          Length = 247

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/204 (26%), Positives = 95/204 (46%), Gaps = 4/204 (1%)

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                     + +     ++      +  +  P  IKP   GSS+GI      + +   L
Sbjct: 46  PQVNYCEIHSIDLLDKKRLSYLIQKIETQLGYPCFIKPANLGSSVGISKAYDKKELLNGL 105

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNST 212
             ++      ++++E+ +   EL C V+G   +  +        SD+Y Y+ KYS  ++ 
Sbjct: 106 DLAAQL--DSRIVVEKNIKARELECAVIGKKQIKTSCVGEVRYSSDWYDYDSKYSKNSTK 163

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            ++PA IP  I KEVQ L+ LA +AI   GI+R DF +D     ++  EIN  PG T  S
Sbjct: 164 TLIPAPIPEKISKEVQSLSILACKAISAEGIARVDFFYDEEKDSLWINEINTMPGFTEQS 223

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++P +   +G    +L+  ++E A
Sbjct: 224 MYPMLWDASGIDISQLVARLIESA 247


>gi|157363697|ref|YP_001470464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314301|gb|ABV33400.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 334

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 61/288 (21%), Positives = 117/288 (40%), Gaps = 14/288 (4%)

Query: 22  CASALEDAGFKVSQID-VDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIP 78
              ++E  G +V  ++ V       L   K D+ +N   G +       V AIL    IP
Sbjct: 31  IKKSIESGGHEVVLMEAVPEKFIPALTSEKVDIVYNFAEGTYSRAREAQVPAILSFYNIP 90

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YT S     A+ +DK  +KQ++ +  +      ++       +  +  P ++K    GSS
Sbjct: 91  YTGSDATTLAVCLDKALTKQILLTKDIKTPRFQVIRSPQEKLRKNMRFPLILKLNAEGSS 150

Query: 139 L---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------GVMGDASLDV 189
                  ++        ++ +  S  + + +L+E+++ G E T              +  
Sbjct: 151 KGISETGLVHNYDEYKKEIDRLFSI-YSEPVLVEEFIRGREFTIGVLQEGNKYYVLPIME 209

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                 K  +     K S     +  PAKI L + ++++ +A    + +  + ++R D  
Sbjct: 210 IHFKHGKEFYSYKVKKNSDYYVDYTCPAKIDLMLERKLKNMAVKICKTLEIKDVARMDLR 269

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
                   ++LEIN  PGM    S  P +A  A  ++ EL+L ++E+A
Sbjct: 270 VSQEDNNPYFLEINPLPGMARGFSDLPRIAEVADLTYEELILHVLENA 317


>gi|270307989|ref|YP_003330047.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
 gi|270153881|gb|ACZ61719.1| D-alanine--D-alanine ligase [Dehalococcoides sp. VS]
          Length = 338

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 82/312 (26%), Positives = 145/312 (46%), Gaps = 21/312 (6%)

Query: 4   LMGGIS---SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + GG      E + S  + +A  +AL+ AG  V ++   +     +   K DL FN+  G
Sbjct: 16  VAGGPDDALEEYD-SPETVEAITTALKAAGHTVYRLGGGKEFLRRVQEQKLDLVFNISEG 74

Query: 61  ---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVN 114
                  +  + +ILE+L+IPYT S     A+ +DK  +K++V+S G+            
Sbjct: 75  LGNYRSREAQIPSILEMLDIPYTGSDPQTLAICLDKPLTKKLVASAGIKTARWQLVNNCE 134

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYV 172
             +         P  +KP   GSS G+    + +SI   +  ++     +   +LIE+++
Sbjct: 135 ELSAIDWSGFPLPAFLKPACEGSSKGVRFASRAESIDEIMSMAADLLTTYEQPVLIEEFI 194

Query: 173 DGIELTCGVMGDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYK 225
           +G E+T GV+G+ S +V      VPK+    +       +       + +PA +P +   
Sbjct: 195 NGEEITVGVIGNTSPEVLGIMRVVPKTKTDYFVYSIEVKRNWRQMVEYEVPAALPGETLA 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYS 284
            +++    A++ + CR + R DF   P     ++LE+N  PG+ PVS   P MA+  G S
Sbjct: 255 RIEKATLDAYKVLECRDLCRMDFRISP-DGVPYFLEVNPLPGLNPVSGDLPIMASKLGIS 313

Query: 285 FRELLLWMVEDA 296
             EL+L ++  A
Sbjct: 314 HAELVLKILNTA 325


>gi|57234544|ref|YP_181371.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
 gi|57224992|gb|AAW40049.1| D-ala D-ala ligase [Dehalococcoides ethenogenes 195]
          Length = 338

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 78/305 (25%), Positives = 136/305 (44%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTQAGHTVYRLGGGKEFLRRVQEQKLDLVFNIAEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124
           +  ILE+L+IPYT S     A+ +DK  +K++V+  G+              +       
Sbjct: 85  IPGILEMLDIPYTGSDPQTLAVCLDKPLTKKLVADAGIKTARWQLVTSCEELSAIDWSGF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    +  S    +  ++     +   +LIE+++ G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAGSAKEIVSMAAELLTAYEQPVLIEEFISGEEITVGVI 204

Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V      VPK+    +       +       + +PA +P +    +++    A+
Sbjct: 205 GNIQPKVLGIMRVVPKTKTDYFVYSVEVKRNWRQMVEYEVPAALPAETLSRIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + +GCR + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  EL+L +++
Sbjct: 265 KVLGCRDLCRMDFRVSP-DGIPYFLEVNPLPGLNPVSGDLPIMASKLGISHAELVLKILD 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TALAR 328


>gi|119775038|ref|YP_927778.1| D-alanyl-alanine synthetase A [Shewanella amazonensis SB2B]
 gi|189083048|sp|A1S6V2|DDL_SHEAM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|119767538|gb|ABM00109.1| D-alanine--D-alanine ligase [Shewanella amazonensis SB2B]
          Length = 336

 Score =  112 bits (279), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 69/328 (21%), Positives = 123/328 (37%), Gaps = 41/328 (12%)

Query: 2   AVLMGGISSEREVSLSSGK---ACASALEDAGFKVSQIDVDRSVGLVLAHLKP------- 51
            +L GG  SE ++SL S K   +C + L    F    +++           +        
Sbjct: 7   VLLCGGGGSEHDISLLSAKYFESCLATLPR--FNTLWLELTAEGQFRTREGEIVELTNRR 64

Query: 52  --------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                         D     +HG  GE G +Q+   L+ +PY   G  AS+   +K+ +K
Sbjct: 65  EIRFADEAKAPWSVDYVIPCIHGYPGETGDIQSWFNLIRLPYFGCGSEASSNCFNKITAK 124

Query: 98  QVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
              S+ G+P  P +            +++         IK    GSS+G     + + IP
Sbjct: 125 MWFSALGIPNTPYLYLDEPSNDAIARVEAAFDEWGSVFIKAASQGSSVGCFPAHRREDIP 184

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSDFYSYELK 205
             + ++    +   +++E+ +   EL   V                 A      +  +  
Sbjct: 185 GLVRKAF--EYAPFVVVEKTIKARELEVAVYDYQGEIVATRPGEIVCAANTFYSFEEKYD 242

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             S   THV    +  +    ++  A  A + +  R +SR DF       ++   EIN  
Sbjct: 243 TKSQAVTHVEAPDVDEETVAAIRDYALRAFKGMKLRHLSRIDFFLTE-DNQILLNEINTF 301

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           PG+T +S+FP+M A+ G+ F   L   +
Sbjct: 302 PGLTQISMFPKMLAHHGHDFATFLEQAI 329


>gi|225022645|ref|ZP_03711837.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224944553|gb|EEG25762.1| hypothetical protein CORMATOL_02688 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 325

 Score =  111 bits (278), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 80/327 (24%), Positives = 145/327 (44%), Gaps = 57/327 (17%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKP------------------------------- 51
            S L+   +++  I + +     +    P                               
Sbjct: 1   MSHLDPEKYELYPIGITQQGTWTVGESDPEKLRSTNGAMPTVTLTKEVSLAADPARRGQF 60

Query: 52  -----------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D+ F VLHG +GEDG +Q + EL  +PY  +G+L+SA  MDK  +K+++
Sbjct: 61  RFADGSEHVTVDVIFPVLHGLYGEDGTIQGLFELSGVPYVGTGVLSSACGMDKEYTKKLL 120

Query: 101 SSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           ++ G+PV   +++      T     L+  P  +KP +GGSS+GI  + + + +   L ++
Sbjct: 121 AAEGLPVGKEVILRGEETLTQADCQLLGLPVYVKPARGGSSIGISRVTRWEDMDAALCEA 180

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP--------KSDFYSYELKYSSL 209
               +  ++++E  + G E+ CGV+      V                 FY ++ KY   
Sbjct: 181 R--QYDTKVIVESEIIGDEVECGVLEYPDGMVVASVPAQLVNTSVGHEGFYGFDAKYVDG 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + + ++PA +     + +Q LA  A QA+ C G++R DF            E+N  PG T
Sbjct: 239 DVSAMIPAPLDDAATRLIQSLAREAFQALQCSGLARVDFFVTQAG--PVLNEVNTMPGFT 296

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
           P+S++P++ A +G  + ELL  ++  A
Sbjct: 297 PISMYPQVFAASGVPYAELLDTLIARA 323


>gi|326693128|ref|ZP_08230133.1| D-alanyl-alanine synthetase A [Leuconostoc argentinum KCTC 3773]
          Length = 377

 Score =  111 bits (278), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 77/345 (22%), Positives = 138/345 (40%), Gaps = 54/345 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQIDVDRSVGLV----------LAHL 49
           +A+L GG SSE +VS  S +    A+E +G + ++   + ++   +          L   
Sbjct: 6   VALLFGGNSSEHDVSKRSAQNYYQAIEASGKYDITVFAIAQNGYFLDPESSKRVLALEDE 65

Query: 50  KP---------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +P                           D+ F V+HGN GEDG +Q +  LL  P+  +
Sbjct: 66  QPIVDAFMAKVDTTDPLARISALREAGDFDIFFPVVHGNLGEDGTLQGLFRLLNKPFVGA 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGG 136
            +   A+S DK  +K++++   +     ++       +               +K    G
Sbjct: 126 PLRGHAVSFDKAMTKELLTVNNIRNTNYVVLDEKTAKDWTWDKVVATFGDVVFVKAANQG 185

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------DV 189
           SS+GI      +     L  S  +++   L+ +      EL  GV+G+            
Sbjct: 186 SSVGISRATTAEEFAAALADSFQYDY-KVLVEQAVKGPRELEVGVIGNDEPLVSEIGAHA 244

Query: 190 TEIAVPKSDFYSYELKYSSLN-STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    +Y Y  K+   +     +PAK+P  I +EV+ +A  A++ +  RG +R DF
Sbjct: 245 VPNQGDGDGWYDYNNKFVDNSAVEFEIPAKLPDAITQEVKDMALKAYKVLNLRGEARMDF 304

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           L D  +   +  E N  PG T +S+F  +  Y+      L+  M+
Sbjct: 305 LLDE-NDVPYLGEPNTLPGFTNMSLFKRLWDYSDIDNVALVEKMI 348


>gi|302672145|ref|YP_003832105.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
 gi|302396618|gb|ADL35523.1| D-alanine-D-alanine ligase DdlA [Butyrivibrio proteoclasticus B316]
          Length = 401

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/367 (21%), Positives = 130/367 (35%), Gaps = 76/367 (20%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49
           AVL GG S+E E+S+ S       +    + V  + + ++    +               
Sbjct: 6   AVLFGGKSTEHEISIISAIQAIGHINRDKYDVIPVYITKNNDFYVGEDVDKIEEYTHIPE 65

Query: 50  ---------------------------------KPDLAFNVLHGNFGEDGLVQAILELLE 76
                                            + D+AF ++HG   EDG +Q  L  L 
Sbjct: 66  LIKKSTQVIWVKEGDKVSLMRYPMKKFGNNVISQVDIAFPIVHGTNVEDGTLQGYLATLG 125

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--------DSQHLISPPY 128
           +P     +L+SA+ M+K   K V+   G+PV                     +     P 
Sbjct: 126 LPVVGCDVLSSAVGMNKYVMKTVLKDNGIPVLDCKCYTWKDYEDVNALVEKIEAAFEYPV 185

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--------GDQLLIEQYVDGIELTCG 180
           +IKPL  GSS+GI       ++   L     ++          D   I   V G      
Sbjct: 186 IIKPLNLGSSIGIKKASDRDALIEALDLGFEFSKKILVEPAISDLKEINCSVIGDYENAK 245

Query: 181 VMGDASLDVTEIAVPKSDFYSYELK-----------YSSLNSTHVLPAKIPLDIYKEVQR 229
                    ++  +   D Y    K               +    +PA+I  +  +E++ 
Sbjct: 246 ASECEEPVNSDDILSFEDKYIGGAKGSAKGAKTGGSKGMASLKRKIPAEITPERREEIRT 305

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A  A + +GC GISR DF+ D  + KV+  EIN  PG    S+   +    G  + +LL
Sbjct: 306 MAVDAFKCLGCSGISRIDFMIDKKTDKVYLNEINTIPG----SLSFYLWEPLGLKYTDLL 361

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 362 DEIIELA 368


>gi|171316210|ref|ZP_02905433.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098624|gb|EDT43421.1| D-alanine/D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 275

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 79/250 (31%), Positives = 119/250 (47%), Gaps = 8/250 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S+EREVSL+SG+     L DAG      D        L       AFN LHG
Sbjct: 12  VAVLFGGESAEREVSLTSGRLVLQGLRDAGIDAHPFDPAERPLSALKDEGFVRAFNALHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
            +GE+G +Q  L+   I YT SG+L SAL +DK R+K V    GVP  P   V R    +
Sbjct: 72  GYGENGQIQGALDFYGIRYTGSGVLGSALGLDKFRTKLVWQQTGVPTPPFETVMRGDDYA 131

Query: 121 QH------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P  +KP   GSS+ ++ +K   ++P  L  S +  H   +++E+ ++G
Sbjct: 132 ARATDIVAKLGLPLFVKPASEGSSVAVLKVKTADALPAAL--SEAATHDKIVIVEKSIEG 189

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +           VP  +FY Y  KY + ++ +++P  +P     E++R+A  A
Sbjct: 190 GGEYTACIAGDLDLPLIKIVPAGEFYDYHAKYVADDTQYLIPCGLPAQQEAELKRIARRA 249

Query: 235 HQAIGCRGIS 244
              +GC    
Sbjct: 250 FDVLGCTDWG 259


>gi|163750869|ref|ZP_02158103.1| D-alanylalanine synthetase [Shewanella benthica KT99]
 gi|161329427|gb|EDQ00422.1| D-alanylalanine synthetase [Shewanella benthica KT99]
          Length = 336

 Score =  110 bits (275), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 64/318 (20%), Positives = 117/318 (36%), Gaps = 36/318 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40
           ++ GG   E  +SL S K   ++L       V ++++D                     R
Sbjct: 8   LICGGGGDEHAISLMSAKFFETSLAKLAHINVLKVELDAQGHYRTSDGELCELTNRKQIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                 A    D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   
Sbjct: 68  FDDDNKACWPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKITAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N F                   IK    GSS+G   +   + +   L
Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSQEELTEYL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            Q+    +   +++E+ ++  EL   V       +           +    +    + + 
Sbjct: 188 QQAF--TYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICATNTFYSFDEKYAENS 245

Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                 +      +   ++  A    + +    +SR DF     + ++   EIN  PG+T
Sbjct: 246 QAETKVVADISESVSLRIREYAVKVFKGMKLSHLSRIDFFLTE-NNEILLNEINTFPGLT 304

Query: 270 PVSIFPEMAAYAGYSFRE 287
           P+S+FP+M  + G  F +
Sbjct: 305 PISMFPKMLQHHGDDFSD 322


>gi|85714979|ref|ZP_01045964.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
 gi|85698176|gb|EAQ36048.1| D-alanine--D-alanine ligase [Nitrobacter sp. Nb-311A]
          Length = 329

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 83/324 (25%), Positives = 134/324 (41%), Gaps = 32/324 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-----GFKVSQIDVDRS-------------- 41
           + +L GG + ER VS++S +A   AL +A       +   IDV                 
Sbjct: 3   ITILFGGSNKERLVSVASAQALHHALPEADLWFWNHRDEVIDVRPEALRNHARPFEDEFV 62

Query: 42  -------VGLVLAHLKPD--LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                  +   L   K +  +    LHG   E+G +QA+ EL  IP+T SG  AS L+ D
Sbjct: 63  PAGEGAPLERALDKAKAEGRVLVLGLHGGRAENGELQAMCELRRIPFTGSGSAASHLAFD 122

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+ +K+ V+S GVP    I +    +D         V KP   GSS G+I +   Q I  
Sbjct: 123 KVAAKRFVASAGVPTPAHIPLQS--IDRALAEHGRLVAKPACDGSSYGLIFVDAPQDIVT 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + + ++  +  +        +     G          VP    + Y  KY +  + 
Sbjct: 181 VREAAKTEDYVIEPFVSGVEATCGVLEHSDGSVVALPPVEIVPAEGAFDYAAKYLAKTTQ 240

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            + P +   +I +++   +  AH A+ CRG SR+DF+         +LE N  PG+T  S
Sbjct: 241 EICPGRFSPEIAEQIMDYSLRAHLALSCRGYSRTDFIVTGKG--PIYLETNTLPGLTAAS 298

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           ++P+        F + L   +  A
Sbjct: 299 LYPKALHAQNIGFADFLRDQIMLA 322


>gi|58698111|ref|ZP_00373034.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535357|gb|EAL59433.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 213

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 1/150 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      ++     + 
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +   I  PYV+KP+  GSS+G+ +I   + 
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHED 156


>gi|148257414|ref|YP_001241999.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
 gi|146409587|gb|ABQ38093.1| D-alanine--D-alanine ligase [Bradyrhizobium sp. BTAi1]
          Length = 329

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 89/327 (27%), Positives = 143/327 (43%), Gaps = 41/327 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--VDR-SVGLVLAHLKP-------- 51
           +L GG + ER VS++S +A  + L D+     + D  V R S   ++AH +P        
Sbjct: 5   ILFGGSNKERLVSVASAQALHATLPDSDLWFWEADDAVHRVSGKALVAHARPFEEPFTAD 64

Query: 52  -----------------DLAF-NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D      LHG   E+G +Q + E+  +P+T S   AS L+ DK
Sbjct: 65  GPRIGTLADALDRAKAEDRVLVLALHGGRAENGELQVMCEMRGVPFTGSSSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+     GV V   + +               + KP+K GSS G+I +   Q +   
Sbjct: 125 VAAKRFAVLGGVTVAEGVSLADAEAALAQ--HGRLIAKPVKDGSSFGLIFVNAKQDLVA- 181

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSL 209
                +    ++ LIE +V G E TCGV+      +        +P    ++Y  KY + 
Sbjct: 182 ---VRAAAATEEYLIEPFVTGTEATCGVLEQPDGSLIALPPIEILPADGAFNYFAKYLAT 238

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +  + P +   +I   +Q  A  AH+A+ C G SRSDF+         +LE N  PG+T
Sbjct: 239 ATKEICPGRFTPEITAALQTEAIKAHRALSCGGYSRSDFIVSA--NGPVYLETNTLPGLT 296

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
             S++P+  A    SFR+ L   ++ A
Sbjct: 297 AASLYPKALAAQNISFRDFLQQQIDLA 323


>gi|58696727|ref|ZP_00372272.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
 gi|58537095|gb|EAL60215.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           simulans]
          Length = 175

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 60/150 (40%), Positives = 92/150 (61%), Gaps = 1/150 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +A+L GG S ERE+SL SGKA   AL+   +   +IDVD ++   L  + P LAF  LHG
Sbjct: 7   IAILSGGFSCEREISLMSGKAVKKALDSLSYNAIEIDVDSNIAEKLKKINPGLAFIALHG 66

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMD 119
            +GEDG +Q +LE+L I YTHSG++ASA++++K+ SK +  S  +      ++     + 
Sbjct: 67  PYGEDGCIQGLLEILGIKYTHSGVMASAVAINKVMSKHIFRSLNIDTPKGYVISREDVLK 126

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +   I  PYV+KP+  GSS+G+ +I   + 
Sbjct: 127 NNIKIDYPYVLKPINEGSSIGVYIIFSHED 156


>gi|229826927|ref|ZP_04452996.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
 gi|229788545|gb|EEP24659.1| hypothetical protein GCWU000182_02311 [Abiotrophia defectiva ATCC
           49176]
          Length = 174

 Score =  109 bits (273), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 47/171 (27%), Positives = 87/171 (50%), Gaps = 4/171 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P ++KP  G SS+G+ +    Q     L+++   ++ +Q+++EQ++ G E +  V+ 
Sbjct: 1   MDFPVIVKPCCGDSSVGVCIAHNQQEYKAALMEAF--SYENQVVVEQFITGREFSVAVVD 58

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +        P   FY Y+ KYS+ +     PA +   + KE+Q  A   ++A+  +  
Sbjct: 59  GKAY-PVVEIAPLEGFYDYKNKYSAGSCVETCPADLSASLTKEMQMYAEKGYEALNLQAY 117

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +R DFL       ++ LE N  PGMTP S+ P+ A   G ++ +L   ++E
Sbjct: 118 ARLDFLM-EEDGSMYCLEANTLPGMTPTSLIPQEARVIGMNYPQLCEKLIE 167


>gi|310821816|ref|YP_003954174.1| d-alanine-d-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394888|gb|ADO72347.1| D-alanine-D-alanine ligase family protein [Stigmatella aurantiaca
           DW4/3-1]
          Length = 725

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 136/301 (45%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S ++ +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G      +  
Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+           + P
Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487

Query: 128 YVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181
            ++KP+  GSS       V   +  +   +++  +  +    L+E+Y+ G E T G+   
Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELRE-VVKEIASKYKQPALVEEYIGGREFTVGLLGE 546

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                           +     Y  ++    +    +  PAK+   + + ++  A  +  
Sbjct: 547 RRPRVLPPMEIVFLDKEEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRAAARGSFM 606

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR ++R DF  D    +++++E N  PG+TP  S    +A  AG  +R L+  ++  
Sbjct: 607 ALGCRDVARIDFRMDDK-GRLYFIECNPLPGLTPGWSDLVLIAQGAGMDYRTLIGEIMAP 665

Query: 296 A 296
           A
Sbjct: 666 A 666



 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 22/299 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74
            A A A+E  G ++ + +V          L    PDL FN   G      +    A+ + 
Sbjct: 27  NALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L  PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++KP  
Sbjct: 87  LGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNF 146

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            GSS GI      +        +  +   +   +L+E+Y+ G +LT   +     D   +
Sbjct: 147 EGSSKGITQDSIAETLDEVRAKVTQALAKYPAGVLVEEYIGGKDLTVPFLAAVDNDYDGV 206

Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238
             P                 +                PA I     ++V+++A    Q +
Sbjct: 207 LSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQVL 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            CR + R DF         ++LEIN  P + P +     A   G     ++  +++ A+
Sbjct: 267 DCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQSAA 324


>gi|289432514|ref|YP_003462387.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
 gi|288946234|gb|ADC73931.1| D-alanine--D-alanine ligase [Dehalococcoides sp. GT]
          Length = 338

 Score =  109 bits (271), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 134/305 (43%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEHKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV              +       
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V      VPK+    +       +       + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLAHIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L+L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|255943331|ref|XP_002562434.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211587167|emb|CAP94831.1| Pc18g06070 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 366

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 73/330 (22%), Positives = 123/330 (37%), Gaps = 43/330 (13%)

Query: 7   GISSE------REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNV 57
           G S E       +  +   +A  S L+  G +V+ +    S+   LA  K    DLAFN+
Sbjct: 26  GYSEEDCAALTHDGEI---QAVLSTLKKLGHQVTLVPGIESLVQQLAAGKHKCWDLAFNM 82

Query: 58  LHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             G  G      V A+L   ++P+T +     AL  +K  +K V++   +P  P +++  
Sbjct: 83  AQGFHGPARESQVPALLGAYQVPHTFADAATMALCQNKANTKMVLNHHNIPTAPFVVIPA 142

Query: 116 FTMDSQHL------ISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  +      +  P  +KP+  GSS    G   +K    +   + Q  S    + +
Sbjct: 143 SEPADSLIKFTTSGLQYPLFVKPVTEGSSKGIDGFNKVKNPAELEPAVHQLRSKFPAEDI 202

Query: 167 LIEQYVDGIELTC---------------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L+E ++ G E T                  +           V       +  ++S  + 
Sbjct: 203 LVEPFLSGREFTVGILGAGEDSRVIGVREFIWKKPSADFTNGVDGHPDLEFASRWSKSSR 262

Query: 212 THVLPAKIP--LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLEINVQPG 267
             ++P          +   R++  A +  GCR   R D  FD          LE+N   G
Sbjct: 263 NKLIPRDQDLTHPQVQAACRVSLDAWKVFGCRDAGRVDIRFDSDEPDAVPNILEVNPISG 322

Query: 268 MTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           + P  S  P  A   G S+ ELL  ++E A
Sbjct: 323 LLPDHSPLPACAESNGISYAELLGAIIESA 352


>gi|167647366|ref|YP_001685029.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
 gi|167349796|gb|ABZ72531.1| D-alanine--D-alanine ligase [Caulobacter sp. K31]
          Length = 331

 Score =  108 bits (270), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 76/322 (23%), Positives = 125/322 (38%), Gaps = 38/322 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQ----IDVDRSVGLVLAHLKPDLAFNV- 57
           +L GG S ER VS++S KA A+AL DA          + V     L       ++     
Sbjct: 5   ILFGGTSRERLVSVASAKALATALPDADLWFWAPDDKVYVASDAVLQAHARPFEIDLPTE 64

Query: 58  ------------------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                                   +HG   E+G + A+ E   + +T S   +S L+ DK
Sbjct: 65  GAAIGGIEAALDKAKAEERVLVLGMHGGAAENGDLAALCEARGVAFTGSDSRSSRLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP-- 151
           + +K  V+  GV    ++ +     ++        V KP+  GSS G+I +     +   
Sbjct: 125 IATKAAVAKAGVVAPSTVEL--ADAEAALAKYGKLVAKPVADGSSYGLIFVNGPADLETL 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  ++     +   +   G+    G +            P    + Y  KY S  +
Sbjct: 183 AAAAGREAYVIEPFVAGAEATCGVLEQDGKVFALPPVEIR---PADGAFDYVGKYLSKTT 239

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + PA     +   +Q  A  AH+ +G  G SRSDF+  P      +LEIN  PGMT  
Sbjct: 240 EEICPATFAPAVNAAMQEAALKAHKTVGAGGYSRSDFIVTP--NGPIFLEINTLPGMTAA 297

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S++P+     G +F++ L   +
Sbjct: 298 SLYPKSLKAQGIAFKDFLDGQI 319


>gi|322699308|gb|EFY91071.1| hypothetical protein MAC_02957 [Metarhizium acridum CQMa 102]
          Length = 357

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 75/304 (24%), Positives = 114/304 (37%), Gaps = 27/304 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNFGEDG--LVQAILEL 74
           KA A+ LE  G  V+ +    S+   L    H   DLAFN+  G  G      V A+LE 
Sbjct: 41  KAVAAGLESLGHDVTIVPGVSSLVEHLAAGKHKNWDLAFNMAQGFHGPARESHVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKP 132
             IPYT S     AL  +K  +K +++  GVP  P +++    +     +    P  +KP
Sbjct: 101 YLIPYTFSDAATMALCQNKANTKIILNHHGVPSAPFMVIPSEHLSIHATLPPEYPLFVKP 160

Query: 133 LKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
              GSS        +     + L + +  +   G  +L+E ++ G E T  ++G  S   
Sbjct: 161 ATEGSSKGIDRFNKVNNYAELELAVQKLKAKFPGQDILVESFLSGREFTVSILGTGSHSR 220

Query: 190 T----EIAVPKSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAH 235
                E          Y       +            +     +     K   ++A    
Sbjct: 221 VVGIREHIWQTFPENGYHATEEFASWKSKLSEGCLLRYNDAHDMDDPQVKAACQVALDTW 280

Query: 236 QAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
            A+GCR   R D  F  D        LE+N   G+ P  S  P  A   G SF  LL  +
Sbjct: 281 TALGCRDAGRVDIRFNSDDADAIPNVLEVNPIAGLLPGHSPLPASAEENGLSFEALLTAI 340

Query: 293 VEDA 296
           ++ A
Sbjct: 341 IKSA 344


>gi|153004284|ref|YP_001378609.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
 gi|152027857|gb|ABS25625.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. Fw109-5]
          Length = 731

 Score =  108 bits (269), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 72/301 (23%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL-- 67
           +E + S  + +A   A+   G +V  ++    +  VLA    D+ FN+  G  G +    
Sbjct: 368 AEYD-SPKTLQAIREAIASYGHEVVDLEATTELPFVLAATPVDVVFNIAEGFRGRNRESA 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+LELL+IPYT S   A ++S+DK  +K++V + GV      +++         +S P
Sbjct: 427 VPALLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGVLTPDYAVMHTGKERLPRELSFP 486

Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181
            ++KP+  G         +++ +  +   + +     +    L+E YV G E T G+   
Sbjct: 487 LLVKPVAEGTSKGVTKKSIVRDELELRE-VARELIAKYRQPALVEAYVAGREFTVGLLGE 545

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236
                                 Y  +     +    + +PA++       ++R A     
Sbjct: 546 RRPRVLPPMEIVFLDASDPTPIYSFEMKQDWNDKIRYEVPARLSPRELDRLERAARECFT 605

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR I+R DF  D    +++++E N  PG+ P  S    +A  AG  +R L+  ++  
Sbjct: 606 ALGCRDIARVDFRMDAE-GRIYFIECNPLPGLAPGWSDLVLIAQAAGIEYRALIGEILAF 664

Query: 296 A 296
           A
Sbjct: 665 A 665



 Score = 86.5 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 67/298 (22%), Positives = 122/298 (40%), Gaps = 22/298 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           A A+ALE  G +V +++V          L    PDL FN   G      +    A+ + L
Sbjct: 28  ALAAALERLGHRVERLEVSGPASRTVARLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT S   A AL++DK  +K V++  GV       V        + +  P ++KP   
Sbjct: 88  GMPYTGSDAYALALTLDKQLTKLVLAQHGVATPRWQYVEEARQLQPNALRYPVIVKPNFE 147

Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI      +      ++++ +   +   LL+E+++ G ++T   +  A+ +   + 
Sbjct: 148 GSSKGITQDSVVEDSLRLHEVVREALRRYPAGLLVEEFIVGRDVTVPYLEAAAPERHGVL 207

Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239
            P           +   + +                PAK+     + +Q+L    ++ +G
Sbjct: 208 QPVEYVIDEAAAATRRYAIYDYELKTKLDRYVSVRAPAKLKRSQAERIQQLCETVYRQLG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            R + R D         +++LEIN  P + P +     AA  G     +L  ++E A+
Sbjct: 268 IRDLGRIDLRL-GEDGAIYFLEINALPSLEPGAGIYASAALEGLHADAVLGAVIESAT 324


>gi|268323535|emb|CBH37123.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
 gi|268323656|emb|CBH37244.1| putative D-alanine--D-alanine ligase [uncultured archaeon]
          Length = 339

 Score =  107 bits (267), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 128/297 (43%), Gaps = 25/297 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHG--NFGEDGLVQAILELLEI 77
              AL   G +V  I+ D      L   +   D+ FN+  G      +  + AI ++LEI
Sbjct: 35  VREALMADGNEVILIEADGDAYGKLKEERRDIDIVFNIAEGLRGESRESYIPAICDMLEI 94

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKG 135
           PYT SG+L   L ++K+R+K+++   G+P     L       +D +  +  P ++K L  
Sbjct: 95  PYTGSGVLTLGLCLNKVRTKEILRYYGIPTPDFWLFRSKNEKLDLELELKFPLIVKLLHE 154

Query: 136 GSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV----------- 181
           GS +G+    ++  ++ +   +       +G+ +++E+++DG E T G+           
Sbjct: 155 GSQMGLSSDSIVCSEEDLRDRVAYLMH-EYGEPVIVEEFLDGREFTVGILGNEKPIILPI 213

Query: 182 ----MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                 +               +  +    +L    V PA +  D+  E++ +A  A++A
Sbjct: 214 VEALFEEGQKMRLFTPDKPLLPFIPKGVAINLKERSVCPADVDEDLRSEIEEIALNAYRA 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR   R D            LE+N   G+ P  + P  A  AG S++ L+  ++E
Sbjct: 274 LDCRDWCRIDLRMTRDGDIPNVLELNPIAGIDPSYLLPRAAKAAGISYKRLINMILE 330


>gi|291533191|emb|CBL06304.1| D-alanine--D-alanine ligase [Megamonas hypermegale ART12/1]
          Length = 232

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 65/231 (28%), Positives = 115/231 (49%), Gaps = 11/231 (4%)

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS------QHLISPP 127
           ++++PYT   +L+SA++MDK+ SK +  S G+     ++  +   D           S P
Sbjct: 1   MIDMPYTSCSVLSSAITMDKVASKHLFRSTGISTPNCLIYRKTDTDRNLVEEIAGKFSMP 60

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            V+K    GSS+G+ +++K + +   +       + D +L+E+++ G EL+  V G+   
Sbjct: 61  VVVKAASQGSSIGVEIVEKKEDLQKAIDACF--EYDDAILVEEFIKGRELSIPVYGNKEK 118

Query: 188 D--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                      S  Y Y+ KY+   S H++PA +  ++  ++Q+L   A     CRG+ R
Sbjct: 119 KALPIIEITTNSGRYDYKSKYTKGESFHIIPAPLSEELTAKIQKLCIDACTVADCRGVVR 178

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D +        + LEIN  PGMT  S+ P+ A + G SF EL   +++ A
Sbjct: 179 VDVMLSEE-NIPYVLEINSVPGMTQTSLVPDAANHVGISFGELCEMILQMA 228


>gi|294141187|ref|YP_003557165.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
 gi|293327656|dbj|BAJ02387.1| D-alanine--D-alanine ligase [Shewanella violacea DSS12]
          Length = 336

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 66/322 (20%), Positives = 121/322 (37%), Gaps = 36/322 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGF-KVSQIDVD---------------------R 40
           ++ GG   E  +SL S K   ++L       + +I++D                     R
Sbjct: 8   LICGGGGDEHAISLMSAKFFETSLAKLAHINLLKIELDAQGHYRTQAGELCELTNRKQIR 67

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
              +  A    D     +HG  GE G +Q+  EL+++PY      AS    +K+ +K   
Sbjct: 68  FDDVNKASWPVDYVIPCIHGYPGETGDIQSYFELIKLPYFGCDSEASRNCFNKVTAKMWF 127

Query: 101 SSCGVPVCPSILVNRFTM------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           S+ G+P  P I +N F                   IK    GSS+G   +   + +   L
Sbjct: 128 SALGIPNTPYIFLNDFNDDAINQAQQALASWGSIFIKAASQGSSVGCYRVDSPEELTESL 187

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            Q+    +   +++E+ ++  EL   V       +           +    +    + + 
Sbjct: 188 KQAF--TYSPYVIVEKTIEARELEVAVYEKDGEIIATQPGEIICGTNTFYTFDEKYAENS 245

Query: 215 LPAKIPLD-----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                 +      + +E++  A    + +    +SR DF       ++   EIN  PG+T
Sbjct: 246 QAETKVVADISESVSQEIREYAVKVFKGMKLSHLSRIDFFLTA-DNEILLNEINTFPGLT 304

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
           P+S+FP+M    G +F + L  
Sbjct: 305 PISMFPKMLQNHGDNFSDYLNH 326


>gi|218506497|ref|ZP_03504375.1| D-alanine--D-alanine ligase [Rhizobium etli Brasil 5]
          Length = 111

 Score =  107 bits (266), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 69/93 (74%), Positives = 76/93 (81%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVLMGG SSER VSLSSGKACA+ALE  GFKV+ IDV R V   LA LKPD+ FN LHG
Sbjct: 6  VAVLMGGFSSERPVSLSSGKACAAALEAEGFKVTCIDVARDVSEKLAALKPDVVFNALHG 65

Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           FGEDG +Q ILE LEIPYTHSG+LASAL+MDK
Sbjct: 66 PFGEDGTIQGILEYLEIPYTHSGVLASALAMDK 98


>gi|152991773|ref|YP_001357494.1| D-alanyl-alanine synthetase A [Sulfurovum sp. NBC37-1]
 gi|189083062|sp|A6Q6M8|DDL_SULNB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151423634|dbj|BAF71137.1| D-alanine-D-alanine ligase [Sulfurovum sp. NBC37-1]
          Length = 346

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 70/330 (21%), Positives = 130/330 (39%), Gaps = 51/330 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVL----- 46
           +A+L GG S E E+S+ S       L+          A  K   ID ++    +      
Sbjct: 3   IAILFGGSSFEHEISIVSAITMKKVLKKSTLTYIFVSADRKFYLIDTEKINSKLFSSGEY 62

Query: 47  ---------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  +  D+  N++HG  GEDG V +++E   IPY    + 
Sbjct: 63  KKGKQLVLKNDGFFTKGMFGSKQVAFDVLLNLIHGRDGEDGKVASMMEFFNIPYISPRLE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           ASA+S +K+ +K +  S GV   P   +     D +  +  P +IKP++ GSS+G+ ++K
Sbjct: 123 ASAMSYNKLYTKFLAESLGVKTVPYEHL-SKNGDRKISMEYPVIIKPVRLGSSIGVSIVK 181

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            +  +   L  +      + +++E ++DG  E           +++ +  P+ + +    
Sbjct: 182 SEAELDYALDVAF--EFDNDVIVEPFIDGVKEFNQAGCHTGDWELSIVEEPQKEEFLDFE 239

Query: 205 KYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           K     S       A I  ++   +Q      +  +    I R DF    ++ ++   EI
Sbjct: 240 KKYMDFSRDSQVLSADISEELKNNIQVTFKKIYDPLFMGSIIRCDFFV--VNDEILLNEI 297

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           N  PG     +FP         F  ++  +
Sbjct: 298 NPIPGSMANYLFP--------DFEGMVWRL 319


>gi|114563717|ref|YP_751230.1| D-alanyl-alanine synthetase A [Shewanella frigidimarina NCIMB 400]
 gi|122299324|sp|Q080C3|DDL_SHEFN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|114335010|gb|ABI72392.1| D-alanine--D-alanine ligase [Shewanella frigidimarina NCIMB 400]
          Length = 336

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 65/316 (20%), Positives = 123/316 (38%), Gaps = 34/316 (10%)

Query: 10  SEREVSLSSGKACASAL-EDAGFKVSQIDVDRSVGLVLAHLK------------------ 50
           +E ++SL S +   S+L +   F V ++ +D+         K                  
Sbjct: 15  AEHDISLMSARFFESSLAKSDKFSVLKLVLDKHGHYHTEDGKLCDLTNRREIRFEDNSTP 74

Query: 51  ---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               D     +HG  GE G +Q+   L+++PY      AS+   +K+ +K   S+ GVP 
Sbjct: 75  AWSVDYVIPCIHGFPGETGDIQSYFNLIQLPYFGCESEASSNCFNKITAKMWFSALGVPN 134

Query: 108 CPSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
            P I +++         ++         +K    GSS+G   +    +I   L  + S+ 
Sbjct: 135 TPYIFLHQLDDDAIKQTETAFDNWGSVFVKAASQGSSVGCYKVDVKANIANVLKDAFSYA 194

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----THVLPA 217
               +    +   +E+         +      +       Y        +    T V+  
Sbjct: 195 PYVVVEQTIHARELEVAVYQYQGEVVATLPGEIICDSNTFYSFDEKYATNSKARTDVVAD 254

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  +I + ++  A  A + +  R +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 255 NLSPEISQLIRDYAVKAFKGMKLRHLSRIDFFLTA-DNQILLNEINTFPGLTPISMFPKM 313

Query: 278 AAYAGYSFRE-LLLWM 292
               G++F E L+  +
Sbjct: 314 LQNHGHNFTEYLIDVI 329


>gi|315498872|ref|YP_004087676.1| d-alanine--d-alanine ligase [Asticcacaulis excentricus CB 48]
 gi|315416884|gb|ADU13525.1| D-alanine--D-alanine ligase [Asticcacaulis excentricus CB 48]
          Length = 329

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 82/323 (25%), Positives = 133/323 (41%), Gaps = 33/323 (10%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID---VDRSVGLVLAHLKP-------- 51
           +L GG+S ER V++++ ++   AL +        D    + S   +L H +P        
Sbjct: 5   LLFGGLSRERLVAVATTQSLHKALPEGDLWFWDEDNHVYEASSLALLGHQRPFEVPFRAD 64

Query: 52  -----------------DLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
                            D    + LHG   E+G  Q   E   +P+T SG  AS L+ DK
Sbjct: 65  GHDLGTIDQALDRAAAEDRVLVLGLHGGIAENGEFQVKCEARGVPFTGSGSAASHLAFDK 124

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + +K+  +  GV     I +    +D+        V KP + GSS G+I +     +   
Sbjct: 125 VSAKRFAACAGVSSPAGIAL--SELDAAFAEYGKLVAKPAQDGSSFGLIFVNSTNDLVAV 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              +    +  +  +        +     G          +P    + Y  KY S  +  
Sbjct: 183 RDAAKEQPYLIEPFVTGAEATCAVLEQTDGSLIALPPIEIIPDRGAFDYHSKYLSNKTQE 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + PA+   ++  E+QRLA  AH+A+ CRG +RSDF+         ++E N  PGMT  S+
Sbjct: 243 ICPARFAPEVIAEIQRLAIAAHKALSCRGYTRSDFIVSDKG--PVFIETNTLPGMTASSL 300

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
           +P+  A  G  F E L   V+ A
Sbjct: 301 YPKALAAQGIGFVEFLHGQVDIA 323


>gi|67479916|gb|AAY67966.1| truncated D-alanine:D-alanine ligase 2 [Enterococcus gallinarum]
          Length = 305

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 80/310 (25%), Positives = 134/310 (43%), Gaps = 53/310 (17%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------------- 37
           + VL GG+S ER+VSLSSG   A ALE+ G +   +D                       
Sbjct: 3   IVVLAGGLSHERDVSLSSGGQIAMALEERGHRALLLDLYQGNNEKTFEAAYSIQKQEENP 62

Query: 38  ----VDRSVGLVLAHLK-------------------PDLAFNVLHGNFGEDGLVQAILEL 74
               VD +   +   ++                    D  F  LHG  GE+G +QA  +L
Sbjct: 63  YDYFVDENEPDIEKLIQKNSSQKNVMGKNVVELCRDADFCFIALHGGIGENGKLQAFFDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I Y+ S    S L+MDK  +KQ++    +P     +  +           P V+KP+ 
Sbjct: 123 YGIRYSGSHYKGSLLAMDKDIAKQLMKLNDIPTPKWQIWEQGQEVYYSS---PCVVKPID 179

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            GSS+G+ +++  +     L    +  +  +++IEQ ++G E + GV+GD  L      +
Sbjct: 180 NGSSIGVEIVENKEQFSKAL--KKAEKYNSKVMIEQKIEGREFSVGVLGDNVLPAI-EII 236

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P+  FY+YE KY    +  + PA I  D+   +  +  L ++ +G    SR D++     
Sbjct: 237 PQQGFYNYENKYQKGATEEITPADISSDLATRLSEMTVLVNKVLGLSIYSRVDYIVTKEL 296

Query: 255 RKVFWLEINV 264
             ++ +E N 
Sbjct: 297 D-IYCIEANS 305


>gi|297583027|ref|YP_003698807.1| D-alanine--D-alanine ligase domain-containing protein [Bacillus
           selenitireducens MLS10]
 gi|297141484|gb|ADH98241.1| D-alanine--D-alanine ligase domain protein [Bacillus
           selenitireducens MLS10]
          Length = 714

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 63/295 (21%), Positives = 123/295 (41%), Gaps = 18/295 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGED 65
           L + K     L+  G +V   + D+++   L           +P L FN+ +G    G  
Sbjct: 28  LETIKKIKDGLQSLGHQVKTFEGDKNIIAKLEEFMPSVISGERPGLVFNLSYGIQGKGRY 87

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             V  ILE++ +PY  SG    AL++DK+ +K ++   G+P      + +        ++
Sbjct: 88  MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPRFAELEKPDSPITAELT 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179
            P ++KP     S G+ ++  ++ +   +            L+E+Y++G E+        
Sbjct: 148 YPLIVKPKNEAVSFGLKIVHNEEELRDGVKTIYD-TFQSPTLVEEYIEGREVNVGLLGNN 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V     +++     P+   Y  +          V PA +  ++ ++V++LA     A+ 
Sbjct: 207 PVEALPPVELVFGDGPQIFTYEDKTSGQGSRVQKVCPAPLDDELMEKVKQLAIDTFHALN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           C   +R DF  D  +   + LE+N    +     F   A   G S+ E++  +VE
Sbjct: 267 CFDTARVDFRID-KNGNPYILEVNSMASLGADGSFVYAAQTLGMSYAEIMNRIVE 320


>gi|325919672|ref|ZP_08181675.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325549835|gb|EGD20686.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 198

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 4/178 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++KP   GSS+GI  +     +   ++ ++   +   LL+EQ ++G EL
Sbjct: 23  HAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIEGDEL 80

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+G+ +L      VPK  +Y Y  KY + ++ ++ P        + +++LA  A +A
Sbjct: 81  TVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALDAFRA 138

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            G RG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++E 
Sbjct: 139 AGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVLEQ 196


>gi|325921424|ref|ZP_08183280.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
 gi|325548066|gb|EGD19064.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas gardneri
           ATCC 19865]
          Length = 199

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 4/178 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++KP   GSS+GI  +     +   ++ ++   +   LL+EQ ++G EL
Sbjct: 24  HAAAQQIGLPVIVKPANEGSSVGISRVFDQAQLEEAVVLAA--RYDGALLMEQLIEGDEL 81

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T  V+G+ +L      VPK  +Y Y  KY + ++ ++ P        + +++LA  A +A
Sbjct: 82  TVAVLGEVALPSI-RIVPKGQWYDYNAKYVADDTQYLCPGLEGDAETQ-IRQLALDAFRA 139

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            G RG  R D + D  S +++ LE+N  PGMT  S+ P+ A   G  F EL+  ++E 
Sbjct: 140 AGARGWGRVDVMRDRASGQLYLLEVNTAPGMTSHSLVPKAARQLGIDFEELVWRVLEQ 197


>gi|289746785|ref|ZP_06506163.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687313|gb|EFD54801.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 363

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 65/323 (20%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------- 51
            GG S+E  +S  S  +    L+   F V  + +  +   VL    P             
Sbjct: 20  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 79

Query: 52  ----------------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
                                             D+ F VLHG +GEDG +Q +LEL  +
Sbjct: 80  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 139

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 140 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 199

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+           
Sbjct: 200 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 257

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 258 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 317

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
           +R DF            EIN  P
Sbjct: 318 ARVDFFLT--DDGPVINEINTMP 338


>gi|215404965|ref|ZP_03417146.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 345

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 80/323 (24%), Positives = 133/323 (41%), Gaps = 65/323 (20%)

Query: 5   MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD------------ 52
            GG S+E  +S  S  +    L+   F V  + +  +   VL    PD            
Sbjct: 2   FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDALTITNRELPQV 61

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              + F VLHG +GEDG +Q +LEL  +
Sbjct: 62  KSGSGTELALPADPRRGGQLVSLPPGAGEVLESVDVVFPVLHGPYGEDGTIQGLLELAGV 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPL 133
           PY  +G+LASA+ MDK  +K+++++ G+PV          +         +  P  +KP 
Sbjct: 122 PYVGAGVLASAVGMDKEFTKKLLAADGLPVGAYAVLRPPRSTLHRQECERLGLPVFVKPA 181

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------- 186
           +GGSS+G+  +     +P  +  + +  H  ++++E  + G EL CGV+           
Sbjct: 182 RGGSSIGVSRVSSWDQLPAAV--ARARRHDPKVIVEAAISGRELECGVLEMPDGTLEAST 239

Query: 187 ---LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              + V  +   +  FY +  KY    +   +PAK+   + + +++LA  A  AI CRG+
Sbjct: 240 LGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQLAIRAFAAIDCRGL 299

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
           +R DF            EIN  P
Sbjct: 300 ARVDFFLT--DDGPVINEINTMP 320


>gi|73748467|ref|YP_307706.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
 gi|73660183|emb|CAI82790.1| D-ala D-alanine ligase [Dehalococcoides sp. CBDB1]
          Length = 338

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 73/305 (23%), Positives = 134/305 (43%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67
           E + S  + +A  ++L  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNSLTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV              +       
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V      VPK+    +       +       + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L+L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLVLEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|147669247|ref|YP_001214065.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
 gi|146270195|gb|ABQ17187.1| D-alanine--D-alanine ligase [Dehalococcoides sp. BAV1]
          Length = 338

 Score =  106 bits (264), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 74/305 (24%), Positives = 133/305 (43%), Gaps = 18/305 (5%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGL 67
           E + S  + +A  +AL  AG  V ++   +     +   K DL FN+  G       +  
Sbjct: 26  EYD-SPETVEAITNALTAAGHAVYRLGGGKEFLRKVQEQKLDLVFNISEGLGNYRSREAQ 84

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLI 124
           +  +LE+L+IPYT S     A+ +DK  +K++V+  GV              +       
Sbjct: 85  IPGVLEMLDIPYTGSDPQTLAICLDKPLTKKLVAGAGVKTAKWQLVSNCEELSTIDWSDF 144

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM 182
             P  +KP   GSS G+    + +S    +  ++     +   +L+E++++G E+T GV+
Sbjct: 145 PLPAFLKPACEGSSKGVRFASRAESTDEIMRMATELLTTYNQPVLVEEFINGDEITVGVI 204

Query: 183 GDASLDV--TEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           G+    V      VPK+    +       +       + +PA +P      +++    A+
Sbjct: 205 GNDKPKVLGIMRIVPKTKADYFVYSIEIKRNWRQMVEYEVPAALPAKTLARIEKATLDAY 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFRELLLWMVE 294
           + + C  + R DF   P     ++LE+N  PG+ PVS   P MA+  G S  +L L ++ 
Sbjct: 265 RVLECHDLCRMDFRVSP-DGTPYFLEVNPLPGLNPVSGDLPIMASKLGISHADLALEILN 323

Query: 295 DASCL 299
            A   
Sbjct: 324 TAIAR 328


>gi|37544103|gb|AAQ93036.1| D-alanine-D-alanine ligase B [Rhizobium etli]
          Length = 136

 Score =  106 bits (263), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 68/93 (73%), Positives = 75/93 (80%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG SSER VSLSSGKACA ALE  GFKV+ +DV R V   LA LKPD+ FN LHG
Sbjct: 32  VAVLMGGFSSERPVSLSSGKACAEALEAEGFKVTTLDVARDVSEKLAALKPDVVFNALHG 91

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            FGEDG +Q ILE LEIPYTHSG+LASAL+MDK
Sbjct: 92  PFGEDGTIQGILEYLEIPYTHSGVLASALAMDK 124


>gi|16519939|ref|NP_444059.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
 gi|2494029|sp|P55650|Y4SG_RHISN RecName: Full=Uncharacterized protein y4sG
 gi|2182621|gb|AAB91846.1| conserved putative 40.0 kDa D-alanine--D-alanine ligase
           [Sinorhizobium fredii NGR234]
          Length = 336

 Score =  105 bits (262), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 71/294 (24%), Positives = 131/294 (44%), Gaps = 19/294 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHGNFGEDG--LV 68
             +  +AL++ G +    + D+ +   L     PD       + FN+  G  GE     V
Sbjct: 35  ADSVVAALQECGHETLLCEGDKGLLTTLERFMPPDPLARTSGMVFNLAEGIQGEYRFTHV 94

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
            A+LE+  +PYT S  L   L+ DK+ SK ++   GVP     ++ R T  +   +  P 
Sbjct: 95  PAMLEMAGVPYTGSSPLGHGLTDDKVISKTLMRDSGVPTPNFSIMRRGTEST-DDLRFPV 153

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           V+KP    +S G+ ++ +   +   +    +  +    L+E+Y+DG E+   ++G+  ++
Sbjct: 154 VVKPRHEDNSFGLQLVHEPAQLQQAVKMIVT-KYAQDALVEEYIDGREIHVALLGNQEVE 212

Query: 189 VTEIAVPKSDFYSYELKYSSLNS------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           V  +   +   +   L                 PAKI   +   ++ ++    +A  CR 
Sbjct: 213 VLPMVEFELGEHEAPLLTWEAKYLAAVQPPKTCPAKIESKLATLLRDISVATFRACQCRD 272

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +R D   D  S + F LEIN  PG++  S +   A  AG+S+  L+  +++ A
Sbjct: 273 YARVDLRLD-RSGQPFVLEINSMPGLSTHSAYVLAAMTAGHSYSSLINGILDVA 325


>gi|296313256|gb|ACZ97544.2| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 301

 Score =  105 bits (262), Expect = 7e-21,   Method: Composition-based stats.
 Identities = 64/256 (25%), Positives = 115/256 (44%), Gaps = 11/256 (4%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D  F V+HGN GEDG +Q + +LL  PY  S I ASA++ DK  +K++++  G+ 
Sbjct: 47  EQEEIDFFFPVIHGNLGEDGTIQGLFKLLNKPYVGSNISASAMAFDKDLTKKIITQAGIR 106

Query: 107 VCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
             P +        +      +  +     IKP K GSS+GI  +   +     L  +  +
Sbjct: 107 NTPYVLVTPENRADYSWGRIEEQLGNLTFIKPAKQGSSVGIHRVTNAEEYEAALNDAFKY 166

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS----THVLP 216
           ++   +              +  +  +     AV   +   +    +           LP
Sbjct: 167 DYKVLVEQGIDRPQEVEISILGNEHPIASKLGAVRVPEDDLFYDYENKFVDASGVVFELP 226

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            K+P  +  E+  +A  A++A+G +G++R DFL D  +   +  E N  PG T +S++P+
Sbjct: 227 VKLPQYLVDEITDMALKAYKALGMKGLARIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQ 285

Query: 277 MAAYAGYSFRELLLWM 292
           M   +G S+ EL+  +
Sbjct: 286 MWEVSGISYSELIDRL 301


>gi|108757010|ref|YP_632275.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
 gi|108460890|gb|ABF86075.1| D-alanine-D-alanine ligase family protein [Myxococcus xanthus DK
           1622]
          Length = 729

 Score =  105 bits (262), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/302 (23%), Positives = 134/302 (44%), Gaps = 18/302 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S ++ +A   A+   G +V  ++    +  VL+    D+ FN+  G      +  
Sbjct: 371 AEYD-SPNTLQAIREAIASWGHEVIDLEATAELPSVLSSTPLDVVFNIAEGFKGRNRESQ 429

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-P 126
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+           +  
Sbjct: 430 VPALLELLDIPYTGSDPATLSIALDKGLAKKIVRQAGILTPNFQLMATGKERLNKEFTSF 489

Query: 127 PYVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           P ++KP+  GSS       V   +  +   +++  +  +    LIE+Y+ G E T G+  
Sbjct: 490 PLIVKPVAEGSSKGVVTKSVCHSEAELRE-VVREIAGKYQQPALIEEYIRGREFTVGLLG 548

Query: 182 ---MGDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                            +     Y  ++    +    +  PAK+   + + ++  A  + 
Sbjct: 549 ERRPRVLPPMEIVFLDREEKNPVYSFQHKLDWTDRIRYDAPAKLEPALLERLRTAARNSF 608

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
            A+GCR ++R DF  D    +++++E N  PG+TP  S    +A  AG  +R L+  ++ 
Sbjct: 609 MALGCRDVARIDFRMDDK-GRIYFIECNPLPGLTPGWSDLVLIAQGAGMDYRGLIGEIMA 667

Query: 295 DA 296
            A
Sbjct: 668 PA 669



 Score = 80.7 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 22/299 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74
            A A+A+E  G ++ + +V          L    PDL FN   G      +    A+ + 
Sbjct: 27  NALAAAIERIGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L  PYT S   A A+++DK  +K V+S  G+       V + +  S   +  P ++KP  
Sbjct: 87  LGFPYTGSDAYALAVTLDKQLTKLVLSKQGIRTPGWQYVEKLSELSAENLRFPVIVKPNF 146

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            GSS GI      +        + ++   +   +L+E+Y+ G +L    +     D   +
Sbjct: 147 EGSSKGISQDSIAETLDEVRAKVAAALEKYPSGVLVEEYISGRDLAVPFLESVDNDYDGV 206

Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238
             P        +      + +                PA+IP    ++V+R+A   ++A+
Sbjct: 207 LSPVEYVIDPAVTQGRKYAIYDYALKTSREGTVSVRAPAQIPPRTAEDVRRMAQKVYRAL 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            CR + R D          ++LEIN  P + P +     A   G     ++  ++  A+
Sbjct: 267 DCRDLGRIDVRLSDA-GVPYFLEINALPSLEPGAGIYAAAELDGLHLDGVINSIITSAA 324


>gi|301511265|ref|ZP_07236502.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301597563|ref|ZP_07242571.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 170

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 49/166 (29%), Positives = 82/166 (49%), Gaps = 4/166 (2%)

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP+  GSS+G+  ++K +     + +++   H   ++ E+++ G E T   +    L V 
Sbjct: 2   KPVHEGSSVGMSKVEKAEDFAAAIEKAT--QHDAVVMAEKWITGREFTISFLNGQPLPVI 59

Query: 191 EIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +  P    FY YE KY   +  + +P  +     K++Q L   A QA+G  G  R D +
Sbjct: 60  RLQPPADVAFYDYEAKYQRNDVEYGIPCGLSETEEKKLQALCLRAFQAVGAEGWGRIDAM 119

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            D      + LE+N  PGMT  S+ P+ A   GYSF EL + +++ 
Sbjct: 120 QDEQGN-FWLLEVNTVPGMTSHSLVPKAAKAVGYSFDELCVAILDQ 164


>gi|161528516|ref|YP_001582342.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
 gi|160339817|gb|ABX12904.1| D-alanine--D-alanine ligase [Nitrosopumilus maritimus SCM1]
          Length = 743

 Score =  105 bits (261), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 70/312 (22%), Positives = 126/312 (40%), Gaps = 25/312 (8%)

Query: 4   LMGGISSEREVSLSSGKAC---ASALEDAGFKVSQIDVDRSVGLVLAHL--------KPD 52
           + G  + E      S KA    A ALE  G  V  I+ D  +   L           KP 
Sbjct: 41  VFGMTTKEH----YSSKAVERVARALEKGGHSVKVIEGDIHLADELREFMPKVVSGEKPG 96

Query: 53  LAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           + FN+ +G         V A++E+L IPY  SG    A+  DK+ +K V+    +P    
Sbjct: 97  MVFNMAYGIQGQNRYTHVPAMMEMLGIPYIGSGPAGHAIVQDKVMTKIVLQKNNIPTP-G 155

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             V +   D    +  P ++KP    +S+G+ V+     +   +       +   +L+EQ
Sbjct: 156 FWVFKTPDDKFDDLVFPVIVKPKLESTSMGMEVVDNWDDLRNAVKVQIE-KYQQDILVEQ 214

Query: 171 YVDGIELTCGVMGDASLDVTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++ G E   G++G++        V           +   K  +       PAK+  +  +
Sbjct: 215 FISGREFAVGLIGNSPNIEVLPIVEINLGDPDKIQTISDKKKTGGVDKTCPAKLSKEKTE 274

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++   A  A+G    +R DF  D     ++ LE+N    +         A  AGY++
Sbjct: 275 YMKKICIDAFTALGLNDYTRVDFRMD-KDENIYILELNSMASLGMGGSLFYAAKTAGYTY 333

Query: 286 RELLLWMVEDAS 297
             L+  +++ A+
Sbjct: 334 ESLINKILDVAT 345


>gi|153810104|ref|ZP_01962772.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
 gi|149834282|gb|EDM89362.1| hypothetical protein RUMOBE_00485 [Ruminococcus obeum ATCC 29174]
          Length = 226

 Score =  105 bits (261), Expect = 9e-21,   Method: Composition-based stats.
 Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 4/171 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V+K   GGSS+G+ ++   +     L  + ++ +   +          +      
Sbjct: 53  MDFPVVVKTCCGGSSIGVYIVDNQEDYTKALDGAFTYENEVVVEEFVEGVEYTVAVV--- 109

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         VP   FY YE KY         PA I  ++ K +Q  A   + A+     
Sbjct: 110 DGKAYPVVQIVPVQGFYDYENKYKPGAVKETCPAPISEELTKRLQEAAVDGYHALEMESY 169

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +R DF+      K++ LE N  PGMTP S+ P+ AA  G  +  L   +++
Sbjct: 170 ARLDFIVT-KDEKIYCLEANTLPGMTPTSLIPQEAAVLGMDYPTLCEELIK 219


>gi|317128999|ref|YP_004095281.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
 gi|315473947|gb|ADU30550.1| D-alanine--D-alanine ligase [Bacillus cellulosilyticus DSM 2522]
          Length = 714

 Score =  105 bits (261), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 67/301 (22%), Positives = 128/301 (42%), Gaps = 19/301 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGED 65
           L + K   + L   G +V   + D+++   L           +P L FN+ +G    G  
Sbjct: 28  LETIKNIKNGLLAGGHQVKTFEGDKNIINKLEDFMPSVISGERPGLVFNLSYGIQGKGRY 87

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             V  ILE++ +PY  SG    AL++DK+ +K ++   G+P     +++         +S
Sbjct: 88  MHVPGILEMIGVPYVGSGPETHALALDKVVTKMILLQKGLPTPKFTVLDNPDSKFHEDLS 147

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179
            P ++KP     S G+ ++  ++ +   +            L+E+Y++G E+        
Sbjct: 148 YPLIVKPKNEAVSFGLKIVNNEEELRDGVKTIYE-KFNSPTLVEEYIEGREVNVGLLGNN 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V     +++     P+   +  +   S      V PA I  ++ K+VQ+LA    +A+ 
Sbjct: 207 PVEALPPVELVFGEGPQIYTFEDKKNKSGRTVEKVCPAPISEELTKKVQQLAIDTFKALD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           C   +R DF  D      + LE+N    +     F   A   G ++ +L+  +V+  +C 
Sbjct: 267 CYDTARVDFRIDKEGN-PYILEVNSMASLGADGSFVFAADKVGLNYSDLMNRIVDI-TCE 324

Query: 300 R 300
           R
Sbjct: 325 R 325


>gi|220916612|ref|YP_002491916.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219954466|gb|ACL64850.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 728

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S  + +A   A+   G +V  ++  + + L L     D+ FN+  G      +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181
            ++KP+  G         V++ +  +   + +     +    L E YV G E T G+   
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236
                           K     Y  +     +    + +PAK+     + +++ A     
Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLTPRELERLEKAARECFT 605

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR ++R DF  D    ++ ++E N  PG+ P  S    +A  AG  +R L+  ++  
Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSF 664

Query: 296 A 296
           A
Sbjct: 665 A 665



 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 22/297 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           A A A+E  G +V +I+V          L    PDL FN   G      +    A+ + L
Sbjct: 28  ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT S   A ++++DK  +K V++  GV       V        + +  P ++KP   
Sbjct: 88  GMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147

Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI             +++Q     +   LL+E++V G +LT   +  A+ +   + 
Sbjct: 148 GSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPERHGVL 207

Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239
            P        +      + +                PAK+     + +Q+L    ++ +G
Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDQAVSVRAPAKVKRAQAERIQQLCETVYRELG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R + R D        ++++LEIN  P + P +     AA  G     +L  +++ A
Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323


>gi|86158871|ref|YP_465656.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
 gi|85775382|gb|ABC82219.1| D-alanine--D-alanine ligase [Anaeromyxobacter dehalogenans 2CP-C]
          Length = 727

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 70/301 (23%), Positives = 130/301 (43%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S  + +A   A+   G +V  ++  + + L LA    D+ FN+  G      +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLASTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPSALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181
            ++KP+  G         V++ +  +   + +     +    L E YV G E T G+   
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDELELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQ 236
                           K     Y  +          + +PAK+       +++ A     
Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWSERIRYEVPAKLSPRELDRLEKAARECFT 605

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR ++R DF  D    ++ ++E N  PG+ P  S    +A  AG  +R L+  ++  
Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRGLIGEILSF 664

Query: 296 A 296
           A
Sbjct: 665 A 665



 Score = 82.2 bits (201), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 69/297 (23%), Positives = 119/297 (40%), Gaps = 22/297 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           A A A+E  G +V +I+V          L    PDL FN   G      +    A+ + L
Sbjct: 28  ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT S   A A+++DK  +K V++  GV       V        + +  P ++KP   
Sbjct: 88  GMPYTGSDAYALAVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147

Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI             +++Q     +   LL+E++V G +LT   +  A+ D   + 
Sbjct: 148 GSSKGITQDSVVDDPVRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPDRHGVL 207

Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239
            P        +      + +                PAK+     + +Q+L    ++ +G
Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVYRELG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R + R D        ++++LEIN  P + P +     AA  G     +L  +++ A
Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323


>gi|197121819|ref|YP_002133770.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
 gi|196171668|gb|ACG72641.1| D-alanine--D-alanine ligase [Anaeromyxobacter sp. K]
          Length = 728

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/301 (22%), Positives = 131/301 (43%), Gaps = 17/301 (5%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S  + +A   A+   G +V  ++  + + L L     D+ FN+  G      +  
Sbjct: 368 AEYD-SPKTLQAIREAIASWGHEVVDLEATQDLPLQLVSTPVDVVFNIAEGFKGRSRESQ 426

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V ++LELL+IPYT S   A ++S+DK  +K++V + G+     +++N         ++ P
Sbjct: 427 VPSLLELLDIPYTGSDPAALSVSLDKALAKRMVRTHGILTPDYLVLNTGNERLPRELTFP 486

Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV--- 181
            ++KP+  G         V++ +  +   + +     +    L E YV G E T G+   
Sbjct: 487 LIVKPVAEGTSKGVTRKSVVRDEPELRE-VARELIAKYRQPALAEGYVSGREFTVGLLGE 545

Query: 182 --MGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDIYKEVQRLAFLAHQ 236
                           K     Y  +     +    + +PAK+     + +++ A     
Sbjct: 546 RRPRVLPPMEIVFLDAKDPTPIYSFEMKQDWNERIRYEVPAKLSPRELERLEKAARECFT 605

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVED 295
           A+GCR ++R DF  D    ++ ++E N  PG+ P  S    +A  AG  +R L+  ++  
Sbjct: 606 ALGCRDVARLDFRMDAE-GRIHFIECNPLPGLAPGWSDLVLIAQAAGMDYRALIGEILSF 664

Query: 296 A 296
           A
Sbjct: 665 A 665



 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 67/297 (22%), Positives = 119/297 (40%), Gaps = 22/297 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           A A A+E  G +V +I+V          L    PDL FN   G      +    A+ + L
Sbjct: 28  ALAGAIERLGHRVERIEVSGPASRTVTRLEAFGPDLIFNTAEGRRGRFREAFFPALFDEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +PYT S   A ++++DK  +K V++  GV       V        + +  P ++KP   
Sbjct: 88  GMPYTGSDAYALSVTLDKQLTKLVLAQKGVRTPRWQYVEEPWQLQVNALRYPVIVKPNFE 147

Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI             +++Q     +   LL+E++V G +LT   +  A+ +   + 
Sbjct: 148 GSSKGITQDSVVDDPMRLHEVVQDGLARYPAGLLVEEFVVGRDLTVPFLEAAAPERHGVL 207

Query: 194 VPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAIG 239
            P        +      + +                PAK+     + +Q+L    ++ +G
Sbjct: 208 QPVEYVIDPAVTAGRKYAIYDYELKTKLDKAVSVRAPAKVKRAQAERIQQLCETVYRELG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            R + R D        ++++LEIN  P + P +     AA  G     +L  +++ A
Sbjct: 268 IRDLGRIDLRL-GDDGELYFLEINALPSLEPGAGIYAAAALEGLHEDAVLGAVIQSA 323


>gi|17902566|emb|CAC84690.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 69/286 (24%), Positives = 121/286 (42%), Gaps = 43/286 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  MDK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +   ++  +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              E +  S N+   +PA IP++  K VQ  A   ++ +GCRG++R
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289


>gi|229091614|ref|ZP_04222819.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228691763|gb|EEL45513.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
          Length = 219

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 53/220 (24%), Positives = 104/220 (47%), Gaps = 9/220 (4%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
           +L+S + MDK  SK+++   G+     I    +    +D    +  P V+KP  GGSS+G
Sbjct: 1   MLSSGICMDKNISKKILRYEGIETPDWIELTKMEDLNLDELDKLGFPLVVKPNSGGSSVG 60

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + ++     +   L     W    +++IE+Y+ G E+TC +               ++F+
Sbjct: 61  VKIVYDKDELISMLETVFEW--DSEVVIEKYIKGDEITCSIFDG-KQLPIISIRHAAEFF 117

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  KY    +   +  ++P ++ + V + +   ++A+ C   +R D +        + +
Sbjct: 118 DYNAKYDDAGTIEEV-IELPAELKERVNKASLACYKALKCSVYARVDMMV--KDGIPYVM 174

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           E+N  PGMT  S+ P+ A  AG  + +LL  ++E +  +R
Sbjct: 175 EVNTLPGMTQASLLPKSADAAGIHYSKLLDMIIETSLRVR 214


>gi|218681670|ref|ZP_03529471.1| D-alanine-D-alanine ligase protein [Rhizobium etli CIAT 894]
          Length = 320

 Score =  104 bits (259), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 71/263 (26%), Positives = 121/263 (46%), Gaps = 16/263 (6%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F VLHG  GEDG VQ   E+  +P    GIL SA ++DK  +K+++ + G+PV  +
Sbjct: 59  IDILFPVLHGPHGEDGSVQGAAEVARVPLAGCGILGSAAALDKDIAKRLLRAAGLPVARA 118

Query: 111 ILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           + ++          +  +  P  IKP + GSS+G+  +   Q     L Q+    H   L
Sbjct: 119 VTIHAGAAPSLSVLEGELGLPLFIKPARQGSSVGVAKVHASQEFAAALEQAF--RHDRTL 176

Query: 167 LIEQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           L E++V G E+   V+         +       A     +           +   +PA +
Sbjct: 177 LAEEFVAGREIEFSVLEDTDGKLFVSRPGEIVPAESHGFYNYNAKYIDENGAALKVPADL 236

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P +I   ++ +A  A +A+GC G++R DF       +    E+N  PG T +S++ +  A
Sbjct: 237 PSEIEAAMRDMAAKAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAMA 295

Query: 280 YAGYSFRELLLWMVED--ASCLR 300
            +G S+ E++  +V    A   R
Sbjct: 296 ASGVSYAEIIDRLVAHGMARARR 318


>gi|269104486|ref|ZP_06157182.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268161126|gb|EEZ39623.1| D-alanine--D-alanine ligase [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 287

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 62/274 (22%), Positives = 115/274 (41%), Gaps = 15/274 (5%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++DR++         +     +HG  GE G +Q+ L++  +PY   G  AS    +K+ 
Sbjct: 16  LNLDRTLQTGDTKQIINYVIPCVHGFPGETGDLQSFLDMAGLPYLGCGAEASRNCFNKIT 75

Query: 96  SKQVVSSCGVPVCPSIL------VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           +K    +  +P  P +                        +K    GSS+G   +    +
Sbjct: 76  TKLWFDALDIPNTPYVFLSENNEDAHTKASEAFDKWGKVFVKAASQGSSVGCYSVTDKAN 135

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA----VPKSDFYSYELK 205
           +    + + ++ + DQ+LIE+ +   EL           +         P   FYSYE K
Sbjct: 136 L--AAVVNDAFGYSDQVLIEKSIKPRELEIAAYQYGDELIITKPGEVSCPDDKFYSYEEK 193

Query: 206 YSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           YSS + +        +  +  + ++  A  A   +  + +SR DF       ++   EIN
Sbjct: 194 YSSDSHSTTAVEATNLSEEQVEALRECARKAFVHMKLKDLSRIDFFLSE-DNEILLNEIN 252

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             PGMTP+S+FP+M    G+SF + +   ++ A+
Sbjct: 253 TFPGMTPISMFPKMLENHGHSFTKFIEQAIKSAA 286


>gi|17902563|emb|CAC84688.1| D-Ala:D-Lac ligase [Enterococcus faecium]
          Length = 289

 Score =  104 bits (259), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 68/286 (23%), Positives = 121/286 (42%), Gaps = 43/286 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +A++ GG S E +VS+ S    A+ ++   F    I + ++    L              
Sbjct: 6   VAIIFGGCSEEHDVSVKSAIEIAANIDTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLP 65

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+AF VLHG  GEDG +Q +  L  IPY    I +
Sbjct: 66  AILSPDRKTHGLLVMKESEYETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQS 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SA  +DK  +  +  + G+ V    ++++        ++ P  +KP + GSS G+  +  
Sbjct: 126 SAACVDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNG 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-------KSDF 199
            + +   +   ++  +  ++LIEQ + G E+ C VMG+    +                 
Sbjct: 186 TEELNAAI--EAAGQYDGKILIEQAISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIH 243

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
              E +  S N+   +PA IP++  K VQ  A   ++ +GCRG++R
Sbjct: 244 QENEPEKGSENAMITVPADIPVEERKRVQETAKKVYRVLGCRGLAR 289


>gi|320160017|ref|YP_004173241.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
 gi|319993870|dbj|BAJ62641.1| putative D-alanine--D-alanine ligase [Anaerolinea thermophila
           UNI-1]
          Length = 400

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 77/305 (25%), Positives = 127/305 (41%), Gaps = 33/305 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           +A  SA+E  G     +  D ++   L   +PD+ FN+  G      +  V A+LE+L I
Sbjct: 62  EAIQSAIESDGHTTRFLSADHTLLDSLREYQPDICFNIAEGIIGDAREAQVPALLEMLGI 121

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S +LA+AL +DK  +K++  + G+P              +  +S P  +KP + G+
Sbjct: 122 PYTASRVLANALGLDKTMTKRIWRNLGIPTASFQEFITGDEPLEADLSFPLFVKPAREGT 181

Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            +G+    ++  +  +   +       H    L+E Y+ G E T GV+G A         
Sbjct: 182 GMGMDEGSIVYNENQLRRRVKWVIEAYH-QPALVETYLPGREFTVGVLGRADARRWSPKP 240

Query: 195 PKSDFYSYE-------------------------LKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +                                    + PA++  D+ +++  
Sbjct: 241 HLYRADGFHRFPILEVDNSNTVTPGVYGYAAKTLHPGEEGVPGFICPAQVEPDLAEKLWT 300

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFREL 288
           LA  AH AIG   +SR D   D        LEIN  PG+TP  S    +A   G S+R+L
Sbjct: 301 LAIRAHNAIGALDVSRVDVRLDAHGN-PRLLEINTLPGLTPGFSDLCVIAQAEGLSYRDL 359

Query: 289 LLWMV 293
           +L ++
Sbjct: 360 ILEIL 364


>gi|162449160|ref|YP_001611527.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
 gi|161159742|emb|CAN91047.1| D-alanine-D-alanine ligase / aminopeptidase [Sorangium cellulosum
           'So ce 56']
          Length = 1185

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 74/298 (24%), Positives = 127/298 (42%), Gaps = 16/298 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAIL 72
           S  + +A  SA+E  G  V  ++    +   LA    D+ FN+  G    G +  V A+ 
Sbjct: 395 SPRTIQAITSAIESYGHTVVPLEATPDLPRALAASGVDVVFNIAEGLRGRGREAQVPALC 454

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKP 132
           ELL IPY+ S     +L++DK  +KQ++ + G+      +V       +     P ++KP
Sbjct: 455 ELLGIPYSGSDATTLSLALDKGLTKQILRAAGIETAEWQVVTTGREKLKP-FRYPVIVKP 513

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTC------GVMGD 184
              G+S GI      +        +      +    LIE+Y+ G E T            
Sbjct: 514 NAEGTSKGITSASVVKDEAAARAAAKQLVDRYHQPALIEEYITGREFTVGLLGERRPKVL 573

Query: 185 ASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             ++V  +  P    Y Y+ K   +       PA++     + V+++      A+ CR +
Sbjct: 574 PPMEVVFVDPPAYPVYGYDEKQSDTPRVRFECPAQLTPSELRRVEKVVRDTFAALACRDV 633

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R D        +V+ +EIN  PG+TP  S    +A  AG  +R L+  ++  A CL+
Sbjct: 634 ARVDLRM-AKDGRVYVIEINPLPGLTPDFSDLCVIAKVAGMDYRMLIGEIL--AGCLK 688



 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 73/317 (23%), Positives = 125/317 (39%), Gaps = 37/317 (11%)

Query: 20  KACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILEL 74
            A A ALE AG +V +I+V      V   L  L+PDL FN   G+ G+       ++ + 
Sbjct: 27  AAIAGALERAGHEVERIEVSGPASRVLARLEALQPDLIFNTAEGHKGKTREAFYPSLFDE 86

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKP 132
           L IPYT S      +++DK  +K+V++S GV    +  +        +   +S P ++KP
Sbjct: 87  LGIPYTGSDAYTLNVALDKSLTKRVLASYGVATPRARLVNRTTLDSGALDDVSFPVIVKP 146

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIELTCGVMG------ 183
              GSS GI            L +            LL+E Y+ GI++ C  +       
Sbjct: 147 NFEGSSKGIFREWSVCEDAHHLAEVVERQLARFEAGLLVEHYIAGIDVACAFVDGLKEAN 206

Query: 184 ---------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                               +        + Y + LK++        PA++P    + ++
Sbjct: 207 GARSSGTGIPEGVLTPIEFVIDPQVPGSYNVYDFNLKHAKPEQVTRRPAQLPAATIERIR 266

Query: 229 RLAFLAHQAIGCRGISRSDFLFDP-----LSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +     +A+  +  +R +F   P         V +LE++  P + P +     AA  G 
Sbjct: 267 AITARVVRALDLKDHARCEFRVTPSASRSQGHDVHFLEVDGLPTLQPGASVFVAAAQRGV 326

Query: 284 SFRELLLWMVEDASCLR 300
            F  ++  +V  A C R
Sbjct: 327 DFDGVIRAIVRSA-CKR 342


>gi|255940354|ref|XP_002560946.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211585569|emb|CAP93280.1| Pc16g06100 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 363

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 75/340 (22%), Positives = 120/340 (35%), Gaps = 52/340 (15%)

Query: 7   GISSE------R--EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAF 55
           G S E         E+      A  +ALE  G  V+ +    ++  +L    H   DL F
Sbjct: 25  GYSEEQCAALPHRGEI-----DAVMAALERLGHHVTLVSGIEALVQLLAAGKHNGWDLVF 79

Query: 56  NVLHGNFG--EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           N+  G  G   +  V A+LE  ++PYT S     AL  +K  +K ++    +P  P  ++
Sbjct: 80  NMAQGFHGSARESQVPALLEAYQVPYTFSDAATMALCQNKQVTKTILDRHMIPNAPFSVI 139

Query: 114 NR------FTMDSQHLISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   F      L   P  +KP+  GSS    G   +K+   +   + +      G 
Sbjct: 140 PMLDVVADFPKGFAALPPYPLFVKPVTEGSSKGIDGFNKVKEPADLKPAVWELVRKFPGQ 199

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST------------ 212
            +L+E ++ G E T  ++G                 S E   ++   +            
Sbjct: 200 DILVESFLSGREFTVSILGTGPHSRVIGIREHIWRTSPEHSNTNGYHSDGSLDFASRDSK 259

Query: 213 ---------HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRKVFWLE 261
                    +     +     K   ++A    +   CR   R D  FD          LE
Sbjct: 260 SSKGEKMLLYNDSHDMDEPQIKATCQVALQTWKVFNCRDGGRVDIRFDSDEPGSTPNVLE 319

Query: 262 INVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +N   G+ P  S  P  A   G SF ELL  ++  + C R
Sbjct: 320 VNPIAGLLPGHSPLPATAKMNGLSFEELLSEII-GSVCER 358


>gi|20136383|gb|AAM11649.1|AF492457_1 D-alanine:D-alanine ligase [Azospirillum brasilense]
          Length = 209

 Score =  104 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 73/185 (39%), Positives = 117/185 (63%), Gaps = 11/185 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  PY++KP+  GS++G+ ++++ Q+ P       +W  G++ L+E+++ G ELT G
Sbjct: 26  AHPMPAPYIVKPVDEGSTVGVTLVREGQNSP----VGDAWTFGERALVEEFIPGRELTVG 81

Query: 181 VMG----DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           VMG    +           ++  Y Y  KYS+ ++ H +PA+IP  + +E +RLA LAH+
Sbjct: 82  VMGGLDGECRPLTVTEIRFEAQVYDYTAKYSAGHAVHTVPAQIPEHVAEEAKRLAVLAHR 141

Query: 237 AIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +GCRG+SRSDF +D     +  +F+LEIN QPGMTP+S+ PE AA  G ++  L+ WMV
Sbjct: 142 TLGCRGVSRSDFRWDDRKSGTDGLFFLEINNQPGMTPLSLVPEQAASVGLTYGALVAWMV 201

Query: 294 EDASC 298
           E+A+C
Sbjct: 202 ENAAC 206


>gi|68535999|ref|YP_250704.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
 gi|68263598|emb|CAI37086.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
           jeikeium K411]
          Length = 202

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 52/184 (28%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           Q  +  P  +KP + GSS+GI  +   ++    +  +   +H +++++E  + G E+ CG
Sbjct: 18  QQRLGLPVFVKPARRGSSIGISKVDSWEAFAQAVEIAF--DHDNKMIVESMIHGREVECG 75

Query: 181 VMGDASLDVTEIAVPK--------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           V+      V   A             FY ++ KY     T  +PA I  +   EV+RLA 
Sbjct: 76  VLQYPEGSVIASAPAMLEGTEDGDEGFYGFDAKYLDNTVTPSIPAPIGEEATAEVRRLAV 135

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+ C G++R DF     + +V   EIN  PG TP+S++P+M    G  + +LL  +
Sbjct: 136 RTFEALNCEGLARVDFFVT-DNGEVILNEINTLPGFTPISMYPQMFIAGGMEYPQLLDIL 194

Query: 293 VEDA 296
           +  A
Sbjct: 195 IARA 198


>gi|302341653|ref|YP_003806182.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
 gi|301638266|gb|ADK83588.1| D-alanine--D-alanine ligase [Desulfarculus baarsii DSM 2075]
          Length = 328

 Score =  103 bits (257), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 69/292 (23%), Positives = 122/292 (41%), Gaps = 12/292 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSV-GLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLE 76
            A  +AL   G +  ++     +   +LA  + DL FN+  G   FG +  V A+L+   
Sbjct: 33  AAIEAALTRLGHQPRRVGGLPELMAALLAGQRWDLVFNIAEGLGGFGREAQVPAVLDYHG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
             Y  S  L  +L++ K  +K+VV   G+      +++     ++  ++ P   KP+  G
Sbjct: 93  QAYVFSDPLTLSLTLHKAMAKRVVRDLGLATPDFAVIDDVAQLAEVSLAYPLFAKPVAEG 152

Query: 137 SSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           +  G+    K         + Q     +G  +L+E ++ G E T GV+G  S       +
Sbjct: 153 TGRGVEAAGKVGDAAALAAVCQRLLARYGQPVLVEHFLPGREFTVGVLGTGSAARAVAVM 212

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDI-----YKEVQRLAFLAHQAIGCRGISRSDFL 249
                   E +  S ++       +  ++      +    LA  AH+ +GCR  SR D  
Sbjct: 213 EVILLARAEAEVYSYHNKENCEGLVRYELADGPLAQACAALAVAAHRGLGCRDASRVDLR 272

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            D  + +  ++EIN   G+ P  S  P +   AG  + EL+  +V  A   R
Sbjct: 273 CDE-TGRPHFMEINPLAGLCPGHSDLPILCGLAGMGYDELIEAIVASALARR 323


>gi|319957669|ref|YP_004168932.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
 gi|319420073|gb|ADV47183.1| D-alanine/D-alanine ligase [Nitratifractor salsuginis DSM 16511]
          Length = 349

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 126/332 (37%), Gaps = 52/332 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +A+L GG S E E+S+ S      +L+        +D  R   L+               
Sbjct: 3   IAILFGGSSYEHEISIVSAITLKKSLKRNEPLFIFVDSAREFYLIEPEKMKSKTFSSGEY 62

Query: 47  -----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                    L+ D   N++HG  GEDG +  ++E   IP+    
Sbjct: 63  KKAKKLSLERGGFSMAGGLLGGRKPLEFDCLLNLIHGRDGEDGKIAGMMEFFRIPFIGPR 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           + AS +S  K+ +K +  + G+ V    L+ +        +  P ++KP+  GSS+G+ +
Sbjct: 123 LEASVMSYSKLNTKLLAQALGISVLEYELLRKEGPRKLSRLEYPVIVKPVHLGSSIGVSI 182

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +++   +   L  +      D +++E +V+G  E        ++ +++ I  P+ + +  
Sbjct: 183 VREASQLDYALDVAF--EFDDLVIVEPFVEGIREYNLAGCKTSAWELSLIEEPQKEEFLD 240

Query: 203 ELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
             K     S      +  +D  + + ++      +  +    + R DF       KV+  
Sbjct: 241 FDKKYMDFSRDTRVQEAVIDAPLRERLETAFKNIYDPLFLGSLIRCDFFVVEE--KVYLN 298

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           EIN  PG     +F          F  ++  +
Sbjct: 299 EINPIPGSMAHYLFD--------DFEGIIERL 322


>gi|213021542|ref|ZP_03335989.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 236

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 12/225 (5%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5   IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKAMGFQKVFIALHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----- 115
             GEDG +Q +LELL +PYT SG++ASALSMDK+RSK +    G+PV P + + R     
Sbjct: 65  RGGEDGTLQGMLELLGLPYTGSGVMASALSMDKLRSKLLWQGAGLPVAPWVALTRAEFEK 124

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++KP + GSS+G+  + ++ ++   L  S ++ H D++LIE++
Sbjct: 125 GLSEEQKARISALGLPLIVKPSREGSSVGMTKVVEENALQGAL--SLAFQHDDEILIEKW 182

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + G E T  ++G+  L       P   FY YE KY S  + +  P
Sbjct: 183 LCGPEFTVAIVGEEILPSI-RIQPAGTFYDYEAKYLSDETQYFCP 226


>gi|222159959|gb|ACM47313.1| VanA [Staphylococcus haemolyticus]
          Length = 249

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 64/237 (27%), Positives = 109/237 (45%), Gaps = 10/237 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 16  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 75

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +  +    +  ++LIEQ 
Sbjct: 76  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAIESAR--QYDSKILIEQA 133

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224
           V G E+ C V+G+++  V          Y     +  +            +PA +  +  
Sbjct: 134 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 193

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             +Q  A   ++A+GCRG++R D      + ++   E+N  PG T  S +P M A A
Sbjct: 194 GRIQETAKKIYKALGCRGLARVDMFL-QDNGRIVLNEVNTLPGFTSYSRYPRMMAAA 249


>gi|150391473|ref|YP_001321522.1| D-alanine--D-alanine ligase domain-containing protein [Alkaliphilus
           metalliredigens QYMF]
 gi|149951335|gb|ABR49863.1| D-alanine--D-alanine ligase domain protein [Alkaliphilus
           metalliredigens QYMF]
          Length = 714

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 61/295 (20%), Positives = 125/295 (42%), Gaps = 19/295 (6%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL--------KPDLAFNVLHG--NFGEDGLVQAI 71
               L   G +V   + D+++   L           +P L FN+ +G    G    V  I
Sbjct: 34  IKEGLTAGGHQVKTFEGDKNIITKLEKFMPSVISGERPGLVFNLSYGIQGKGRYMHVPGI 93

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LE+L IPY  SG    A+++DK+ +K ++   G+P     ++++   + +  +  P ++K
Sbjct: 94  LEMLGIPYVGSGPETHAIALDKIVTKMILIQKGLPTPKFTVMDKPDSEIKDNLKYPLIVK 153

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P     S G+ ++  ++ +   +            L+E+Y++G E+  G++G+  ++   
Sbjct: 154 PKDEAVSFGLKIVHNEEELRDGVKTIYE-AFNTPTLVEEYIEGREINVGLLGNNPVEAMP 212

Query: 192 IAVP------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                     +   Y  +   S      + PA +  +  +++++LA     A+GC   +R
Sbjct: 213 PVELTFGEGLQIYTYEDKKNTSGRTVEKICPAPLSDEKTEQIKQLAIDTFNALGCYDSAR 272

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF  D      + LE+N    +     F   A   G  +  L+  +++  +C R
Sbjct: 273 VDFRLDQEGN-PYILEVNSMASLGKSGSFVYAAEKMGLDYVALVNRLIDV-TCER 325


>gi|157375059|ref|YP_001473659.1| D-alanyl-alanine synthetase A [Shewanella sediminis HAW-EB3]
 gi|189083056|sp|A8FUK8|DDL_SHESH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157317433|gb|ABV36531.1| D-alanine--D-alanine ligase [Shewanella sediminis HAW-EB3]
          Length = 333

 Score =  103 bits (255), Expect = 5e-20,   Method: Composition-based stats.
 Identities = 67/310 (21%), Positives = 117/310 (37%), Gaps = 36/310 (11%)

Query: 11  EREVSLSSGKACASALED-AGFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L D  GF V ++++D                  + +       +P
Sbjct: 16  EHAISLLSANFFETSLADITGFNVLRVELDADGHYHTKDGDICELTNRKQIRFEDESKRP 75

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      AS    +K+ +K   S+ G+P  
Sbjct: 76  WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASRNCFNKVTAKMWFSALGIPNT 135

Query: 109 PSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N F  D                IK    GSS+G   +     +   L ++   ++
Sbjct: 136 PYIFLNEFNDDAISQTEQALETWGSVFIKAASQGSSVGCYRVDSIDELASSLKEAF--SY 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL-----PA 217
              +++E+ +   EL           V           +    +    +          A
Sbjct: 194 SPYVVVEKTIHARELEVAAYELDGEIVATKPGEIICASNTFYTFDEKYAADSQAETKVEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            I  ++ +E++  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 254 DISDELSREIREYAVKVFKGMKLSHLSRIDFFLTDE-NEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRE 287
               G  F E
Sbjct: 313 LQNHGDDFTE 322


>gi|256829554|ref|YP_003158282.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfomicrobium baculatum DSM 4028]
 gi|256578730|gb|ACU89866.1| D-alanine--D-alanine ligase domain protein [Desulfomicrobium
           baculatum DSM 4028]
          Length = 331

 Score =  102 bits (253), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 14/297 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71
           S  + +A   AL   G +V  +     +   LA   + D+ FN   G  G   +  V A+
Sbjct: 28  SPVTVEAIRQALASQGHEVELVGGVMPLARALADGRRWDMVFNFAEGMRGLAREAQVPAL 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+  +IPYT SG    ALS+ K  +  V+ + GVP     +VN         +  P  +K
Sbjct: 88  LDAWDIPYTFSGPEVLALSLHKGWTNAVLRAHGVPTADFRIVNSVEEVDAIDLPFPLFVK 147

Query: 132 PLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           P+  GSS       ++K    +  D+            L+E ++ G E T G++G     
Sbjct: 148 PVAEGSSKGVSDKSLVKDRWEL-RDICAHVLKTFHQPALVETFLPGREFTVGILGSGPQC 206

Query: 189 VTEIAV-----PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                +      + D  +Y            L      D   +   +A  A QA+GC   
Sbjct: 207 RVLGVMEVLATARGDACAYTYANKQEWRERALYELAGDDRAAQAAEVARAAWQALGCLDA 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            R D   D    +  ++E+N   G+ P  S  P +    G  + EL+  +++ A   
Sbjct: 267 GRIDVRLDAQ-GQPRFIEVNPLAGLNPESSDLPILCGKIGLGYDELIASIMDSAMAR 322


>gi|148269503|ref|YP_001243963.1| methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281411779|ref|YP_003345858.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
 gi|147735047|gb|ABQ46387.1| Methyltransferase type 11 [Thermotoga petrophila RKU-1]
 gi|281372882|gb|ADA66444.1| Methyltransferase type 11 [Thermotoga naphthophila RKU-10]
          Length = 637

 Score =  102 bits (253), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 123/300 (41%), Gaps = 25/300 (8%)

Query: 21  ACASALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73
              +AL    G+  S +D   ++   L  LK   D  FN+    F  D   +A +    E
Sbjct: 332 QMKAALRSLKGYNFSYLDNHDTLITDLMKLKGKIDYVFNLCDEGFNNDPRKEAHVPALLE 391

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L IPYT SG     L  DK   + +    G+PV  ++ +       +     P ++KP 
Sbjct: 392 MLGIPYTGSGPQTLVLCYDKSLIRGIAREMGIPVPRAVFIKPEDTTFELPFPFPAIVKPN 451

Query: 134 KGGSSL---GIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G SS       V+   + +   +    + + +   +L+E+++ G +L+ G++G+     
Sbjct: 452 FGDSSFGITQKSVVYTPEELINAVSEIRNKFGYDKPVLVEEFLTGKDLSVGIIGNPPDSY 511

Query: 190 TEIAVPKSDF----------YSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             + + + D+            YE K+   S   +   +PA +P +  K +        +
Sbjct: 512 MVLPIIEEDYSALPPELPRICGYEAKWLPDSPYWNIKSIPADLPEETEKFIIDCCLKLFE 571

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + CR   R D+  D        LE+N  PG        +MA  AG S+ E+L  +++ A
Sbjct: 572 RLECRDYCRFDWRLDAEGN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYAEMLGAILKAA 630


>gi|308272544|emb|CBX29148.1| hypothetical protein N47_J01290 [uncultured Desulfobacterium sp.]
          Length = 335

 Score =  101 bits (252), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 62/287 (21%), Positives = 120/287 (41%), Gaps = 12/287 (4%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAILELLEI 77
           A   AL D G+K  +I   +++   L+   + D+ FN+  G FG   +  + AIL+  +I
Sbjct: 34  AIEKALSDLGYKTERIGHIKNLVKYLSQGKRWDIVFNIAEGCFGAGREAQIPAILDAYKI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
            YT S  L  +L+++K  +K +V + G+      LV + +      +  P  +KP+  G+
Sbjct: 94  AYTFSDPLVLSLTLNKAVTKLIVQNLGIATPAFALVEKLSDIDSISLPFPLFVKPVAEGT 153

Query: 138 SLGII--VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA-- 193
             GI       ++    ++            L+E ++ G E T G++G            
Sbjct: 154 GKGISAASKTTNKDDLYNVCFDLLDRFKQPALVETHLPGREFTVGIIGTGEKARVAGVIE 213

Query: 194 ---VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                 ++  SY           V        + ++  ++A  A   + C    R D   
Sbjct: 214 VLLNEHAEGDSYSYINKKKYEELVSYRLADDKMARDTAKVALDAWVGLKCLDAGRIDIRS 273

Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           D ++    ++E+N   G+ P  S  P +   +G S++EL+  +++ A
Sbjct: 274 D-VNGYPNFIEVNPLAGLHPIHSDLPILCRLSGISYKELIDEIMKSA 319


>gi|218672834|ref|ZP_03522503.1| D-alanine/D-alanine ligase [Rhizobium etli GR56]
          Length = 289

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 70/263 (26%), Positives = 126/263 (47%), Gaps = 16/263 (6%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+ F VLHG  GEDG VQ + ++  +P    GIL SA ++DK  +K+++ + G+PV  +
Sbjct: 28  IDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCGILGSAAALDKEIAKRLLRAAGLPVARA 87

Query: 111 ILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           + ++  T  S    +  +  P  IKP++ GSS+G+  +   Q     L ++    H   L
Sbjct: 88  VTIHEGTTPSLAALEGELGLPLFIKPVRQGSSVGVAKVHASQEFAGALAEAF--RHDRTL 145

Query: 167 LIEQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           L E+++ G E+   V+         +       A     +           +   +PA++
Sbjct: 146 LAEEFIAGREIEFSVLEDAAGKLFVSRPGEIVPAESHGFYSYDAKYIDETGAALKVPAEL 205

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P ++   ++  A  A +A+GC G++R DF       +    E+N  PG T +S++ +  A
Sbjct: 206 PPEVEAAMRDAAAEAFRAVGCDGMARVDFFLT-SDMRFVINELNTIPGFTDISMYSKAMA 264

Query: 280 YAGYSFRELLLWMVED--ASCLR 300
            +G S+ E++  +VE   A   R
Sbjct: 265 ASGVSYAEVIDRLVEHGMARAGR 287


>gi|42572325|ref|NP_974258.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641163|gb|AEE74684.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 937

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V            +       D++++E +++            G    C  + 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                              + F        +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +                   S  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              P  +  +  +  ++   L  + +G  G SR D      + +V  +E+N  PGMTP +
Sbjct: 847 PPPPTIMSKEALERCKQGIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPST 906

Query: 273 IFPEMAAY 280
           +  + A  
Sbjct: 907 VLIQQALA 914



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|42572327|ref|NP_974259.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|332641165|gb|AEE74686.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 845

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V            +       D++++E +++            G    C  + 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                              + F        +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +                   S  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|18398265|ref|NP_566334.1| D-alanine--D-alanine ligase family [Arabidopsis thaliana]
 gi|26451726|dbj|BAC42958.1| unknown protein [Arabidopsis thaliana]
 gi|28973361|gb|AAO64005.1| unknown protein [Arabidopsis thaliana]
 gi|332641164|gb|AEE74685.1| D-alanine--D-alanine ligase family protein [Arabidopsis thaliana]
          Length = 519

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V            +       D++++E +++            G    C  + 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                              + F        +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +                   S  + + +IN+  GM   S   + A+  
Sbjct: 380 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 439

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 440 GFSHSNILRTIVHRA-CSR 457



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWVNLQR 514


>gi|127513061|ref|YP_001094258.1| D-alanyl-alanine synthetase A [Shewanella loihica PV-4]
 gi|189083052|sp|A3QEV1|DDL_SHELP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|126638356|gb|ABO23999.1| D-alanine--D-alanine ligase [Shewanella loihica PV-4]
          Length = 334

 Score =  101 bits (251), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 113/316 (35%), Gaps = 36/316 (11%)

Query: 11  EREVSLSSGKACASALEDAGF-KVSQIDVD---------------------RSVGLVLAH 48
           E  +SL S     ++L       V ++++D                     R     LA 
Sbjct: 16  EHAISLLSANYFETSLAKLPHLNVLRVELDAKGQYQSKSGERCELTNRREIRFEDESLAP 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY       S    +K+ +K   S+ G+P  
Sbjct: 76  WPVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDAEGSRNCFNKITAKMWFSALGIPNT 135

Query: 109 PSILVNR------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P + +N+                    +K    GSS+G   +     IP  L  +    +
Sbjct: 136 PYLFLNQLDEQAIAQTTDALAKWGSVFVKAASQGSSVGCYRVDDAAQIPAILADAFH--Y 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI--- 219
              +++E+ +   EL   V       V  +             Y    +           
Sbjct: 194 SPYVVVEKTIQARELEVAVYQYRGETVATLPGEVICAGGTFYTYDEKYAADSKATTKVVA 253

Query: 220 --PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +I ++++  A      +  R +SR DF   P   ++   EIN  PG+TP+S+FP+M
Sbjct: 254 EVSDEIAQQIRAYAVKVFDGMKLRHLSRIDFFLTPE-GEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFRELLLWMV 293
            A  G  F + L   +
Sbjct: 313 LANHGDDFSQYLNEAI 328


>gi|325925852|ref|ZP_08187221.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
 gi|325543683|gb|EGD15097.1| D-alanine--D-alanine ligase [Xanthomonas perforans 91-118]
          Length = 246

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 85/197 (43%), Gaps = 6/197 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             V                  +  P  +KP   GSS+G+  ++        L  +    +
Sbjct: 36  PFVCFNRHTAAMADVEALIAQLGLPLFVKPANQGSSVGVSQVRSADQFAAALALAL--AY 93

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKI 219
             ++L+E  + G E+ C V+G+A+   +           Y  +   ++      V+PA I
Sbjct: 94  DHKVLVEAAIAGREIECAVLGNATPQASVCGEVVVHDAFYSYQTKYISEHGAEIVIPADI 153

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                + +Q++A  A+QA+ C G++R D        ++   E+N  PG T +S++P++  
Sbjct: 154 DARTQQRIQQIAVQAYQALDCAGLARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQ 212

Query: 280 YAGYSFRELLLWMVEDA 296
            +G  +R L+  ++E A
Sbjct: 213 ASGLDYRSLITRLIELA 229


>gi|195940920|ref|ZP_03086302.1| D-alanyl-alanine synthetase A [Escherichia coli O157:H7 str.
           EC4024]
          Length = 147

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 37/133 (27%), Positives = 69/133 (51%), Gaps = 4/133 (3%)

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS---THVLPAKIPLDI 223
           ++EQ ++G E+ C V+G+     +       +   Y      ++      V+PA +  D+
Sbjct: 1   MVEQGINGREIECAVLGNDFPQASTCGEVVLNSDFYSYDTKYIDDKGAQVVVPAALDPDV 60

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              ++ +A  A QA+GC G++R D    P   +V   EIN  PG T +S++P++   +G 
Sbjct: 61  NDRIRAIAIEAWQALGCSGMARVDVFLTP-DNEVVINEINTLPGFTNISMYPKLWQASGI 119

Query: 284 SFRELLLWMVEDA 296
           S++EL+  ++E A
Sbjct: 120 SYQELITRLIELA 132


>gi|307322535|ref|ZP_07601881.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891817|gb|EFN22657.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 332

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 73/293 (24%), Positives = 130/293 (44%), Gaps = 19/293 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------LAFNVLHG--NFGEDGLVQ 69
           +   +AL++ G +    + D+ +   L    P         + FN+  G         V 
Sbjct: 33  EGVVAALQEGGHETLLCEGDKGLLTTLERFMPTNPQGRPSGIVFNLAEGIQGECRCTHVP 92

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A+LE+  +PYT SG L  AL++DK+ +K+++  CGVP     ++ R T      +  P V
Sbjct: 93  AMLEMAGVPYTASGPLGHALTLDKVITKRLLRDCGVPTPNFRVMRRGTESI-GDLRFPLV 151

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP     SLG+ ++ +   +   +    +  +    L+E+Y+DG E+   ++G+  LDV
Sbjct: 152 VKPRLEDCSLGLQLVHEPAQLRQAVEAIVT-QYKQDALVEEYIDGREIAVALLGNEELDV 210

Query: 190 TEIAVPKSDFYSYELKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             +           L         +     + PA+I   I   ++ ++  A +A  CR  
Sbjct: 211 FPLVEHDFGDRETRLMTREAKYVANAMPPQICPAQIGSGIEAVLRDISVAAFRACQCRDY 270

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +R D   D    + F LEIN  PG++  S +      AGYS   L+  +++ A
Sbjct: 271 ARVDLRVDRF-GQPFVLEINPLPGLSMSSSYVLAGMTAGYSLTSLVNRILDVA 322


>gi|218886343|ref|YP_002435664.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
 gi|218757297|gb|ACL08196.1| D-alanine--D-alanine ligase [Desulfovibrio vulgaris str. 'Miyazaki
           F']
          Length = 408

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 128/384 (33%), Gaps = 89/384 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL-------------- 46
           +AV  GG S E +VS+ +G     AL+ A ++   + VDR                    
Sbjct: 8   VAVFFGGRSPEHDVSIVTGLQVIQALDAAQYEPVPVYVDRCGVWRTGEKLLDRATYIPAR 67

Query: 47  -------------------------------AHLKPDLAFNVLHGNFGEDGLVQAILELL 75
                                            +  D+A    HG +GEDG +Q + E +
Sbjct: 68  DADGLPAVSLEIAPGKGGMLVEQTSKLFGKPRRIPFDVAIPAFHGPYGEDGDMQGLFEAV 127

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----------ILVNRFTMDSQHLIS 125
            IPYT   +LASA+ MDK  +KQ ++  G+P+ P           +        +   I+
Sbjct: 128 GIPYTGMRVLASAIFMDKAATKQALAGTGIPMLPCAVLRKPVGGLLPPRADIEAALAGIT 187

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL----------QSSSWNHGDQLLIEQYVDGI 175
            P  +KP   GSS+G+  +   + I   L                +   +  I    DG 
Sbjct: 188 LPGCLKPAHLGSSIGVAKVDSIEDIEAVLPGLFRNDTVAIVEPYLDGCVEYNISVRRDGE 247

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST------------------HVLPA 217
                 +     D   +   +    S     S                         +  
Sbjct: 248 GHATSAIERPKRDSELLDFRQKYLSSGGKTGSKTGGMGGTKSAGDSGSAGMLSLTREINP 307

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +P  +   ++  A   + A G  G  R DF++D    +V+  E+N  PG    S    +
Sbjct: 308 DLPESLEGRIRDFAVRTYAAFGGTGAPRMDFMYDATRDEVWLNEVNPIPG----SFAFFL 363

Query: 278 AAYAG--YSFRELLLWMVEDASCL 299
              A     F  LL  M+++A  +
Sbjct: 364 WEAAESPIRFTRLLSLMIDEARAM 387


>gi|317150914|ref|XP_003190466.1| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40]
          Length = 361

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 70/339 (20%), Positives = 125/339 (36%), Gaps = 50/339 (14%)

Query: 7   GISSE------REVSLSSGK--ACASALEDAGFKVSQIDVDRSVGLVLAH---LKPDLAF 55
           G S E            SG+  +  + L + G  V+ +   +S+   LA       DLAF
Sbjct: 23  GYSEEECAALPH-----SGETGSVLTTLRELGHHVTLVPGVQSLVKHLAAGTYKDWDLAF 77

Query: 56  NVLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           N+  G  G      V A+L+  ++ YT S     AL  +K+ +K +++   +P  P  ++
Sbjct: 78  NIAQGFHGSSREAQVPALLDAYQLLYTFSDAATMALCQNKVHTKIILAHHNIPTAPFSVI 137

Query: 114 NRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGD 164
           +R   +         L   P  +KP+  GS  GI    K      +   + +  S     
Sbjct: 138 SRKDQNLRLENLDNMLSHYPLFLKPVIEGSPKGIDRFNKVTEPAELESAVKKLRSIFPDQ 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY------------------ 206
            +L+E ++ G EL+  ++G                  +  +                   
Sbjct: 198 DILVEPFLSGRELSVSILGTGVQSCVVGVTGFLWQNPFSDRNGENESSSSLEFASRKSKS 257

Query: 207 --SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEI 262
             +++      P  +     K   ++A  A +++GCR   R D  F  D        LE+
Sbjct: 258 SDANMLVVRHDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLEL 317

Query: 263 NVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           N   G+ P  S  P  A   G  ++ LL  +++ A   +
Sbjct: 318 NPISGLLPGHSPLPSSAEENGLPYKRLLAAIIQSALTRK 356


>gi|269217857|ref|ZP_06161711.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
 gi|269212792|gb|EEZ79132.1| D-alanine--D-alanine ligase [Actinomyces sp. oral taxon 848 str.
           F0332]
          Length = 281

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 70/282 (24%), Positives = 143/282 (50%), Gaps = 19/282 (6%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V  +DVD ++   L  ++PD+ + ++HG+ GEDG +Q++LEL+ +PY  +   A  ++ D
Sbjct: 3   VKVLDVDANLLQSLKSMQPDVVWPLIHGSTGEDGSLQSLLELVGVPYVGTPPAACRIASD 62

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD----------SQHLISPPYVIKPLKGGSSLGII 142
           K  +  V+S+ G+ V  S+ + +               +     P V+KP +GGS+LG+ 
Sbjct: 63  KAVAGAVLSTAGLNVPDSVTIPQKLFREVGVGQVLDLIKARFDFPLVVKPAQGGSALGVT 122

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--IELTCGVMGDASLDVTEIAVPKSDFY 200
           ++     +P  ++      + ++  +EQY++G  + ++    G     +  + +     Y
Sbjct: 123 IVASAAGLPRAMVDCF--AYDERARVEQYIEGAEVAVSVVQTGSEPRALPPVEIAADGPY 180

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y+ +Y +  + + +PA++  +    V+  A  AH  +G R +SR+D + D    + + L
Sbjct: 181 DYDARYFAGRAEYFVPARLSEEDTAAVKEAAERAHLVLGLRYLSRTDIILDDA-GRAWIL 239

Query: 261 EINVQPGMTPVSIFPEMAAY----AGYSFRELLLWMVEDASC 298
           ++NV PGMT  S+FP+ A      +  +  +L + ++  A  
Sbjct: 240 DVNVAPGMTETSLFPQAATADALESDTTVDDLYVEILNAALT 281


>gi|256371402|ref|YP_003109226.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
 gi|256007986|gb|ACU53553.1| D-alanine--D-alanine ligase [Acidimicrobium ferrooxidans DSM 10331]
          Length = 369

 Score =  100 bits (248), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 68/349 (19%), Positives = 122/349 (34%), Gaps = 67/349 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG--------------FKVSQ----------- 35
           + V  GG S E ++S+ +G     AL ++G              ++V             
Sbjct: 6   VGVCFGGPSPEHDISILTGLQALRALAESGGSPVAIYWSKEGSFYRVEPSLEAEAYAGGV 65

Query: 36  -----------------IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                            ++    +      L+ D+  N  HG  GEDG +Q  L+L  + 
Sbjct: 66  PAGARPLELVVGRDGGFVEPRGGLRPKRELLELDVVVNCCHGGPGEDGALQGALDLAGVR 125

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           YT      +AL MDK      ++   +     I         +     PY+ KP  GGSS
Sbjct: 126 YTGPSARTAALGMDK------LAFASLLRHHGIACLPREDGRRVTFDGPYIAKPRFGGSS 179

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS- 197
           +GI V++    +    +Q S       ++     D +++   +    +  ++ I  P   
Sbjct: 180 IGIEVLEDRAQL-EARMQRSEHFRDGMVVEPYRPDLMDVQVALRRFPTPTLSAIERPLRS 238

Query: 198 --------DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                       Y+       +   LPA I  ++ + ++ LA    + +  RG+ R DF 
Sbjct: 239 APGEPILTYREKYQPIGGMATAPRELPAAIAPELAETIRSLALSVGELLDSRGVMRVDF- 297

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIF--PEMAAYAGYSFRELLLWMVEDA 296
                 + +  E+N  PG     +F  P+        F   L   + +A
Sbjct: 298 LASTEGECYVNEVNTIPGSLSHYLFVEPK------IPFAAQLEADIREA 340


>gi|282897350|ref|ZP_06305352.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
 gi|281198002|gb|EFA72896.1| D-ala D-ala ligase [Raphidiopsis brookii D9]
          Length = 336

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 127/287 (44%), Gaps = 16/287 (5%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80
           + L D G +V +I     +   L +  + DL FN+  G      +  V A+ EL +  YT
Sbjct: 39  NTLNDLGHQVERIGNGGELTRKLVNGDRWDLVFNIAEGIKGRSREAQVPAVCELFDQAYT 98

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S  L  AL++DK  +K++V   G+P  P I++N     +   +  P   KPL  GSS G
Sbjct: 99  FSDPLTCALTLDKALTKRIVRDRGLPTAPFIVINNIVEIANINLPLPLFCKPLSEGSSKG 158

Query: 141 ---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVMGDASLDVT 190
                ++K    +   + Q+        +L+E ++ G E+T               ++V 
Sbjct: 159 ITGQSLVKDKAELFN-ICQTLYNQFQQPILVETFLPGREITVGIIGNGSQAKVVGIMEVI 217

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                ++D Y+   K   L+         P  +  + ++LA   +  +GCR  +R D   
Sbjct: 218 FTDKAETDSYTTLNKQEYLDRIAYQLITNPEPLAIQAEQLALEVYYLLGCRDAARLDLRC 277

Query: 251 DPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
           D  +  + +LEIN  PG+  + S  P M   AG S+ E++  +V+ A
Sbjct: 278 DA-NGVLHFLEINPLPGLDYIYSDLPIMGRLAGISYTEMVNAIVDAA 323


>gi|291286723|ref|YP_003503539.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
 gi|290883883|gb|ADD67583.1| D-alanine--D-alanine ligase [Denitrovibrio acetiphilus DSM 12809]
          Length = 336

 Score =   99 bits (247), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 69/291 (23%), Positives = 117/291 (40%), Gaps = 14/291 (4%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG--NFGEDGLVQAILELLEI 77
           A  +AL + G  V +I    ++   LA  K  DL FN+  G    G + LV  +L+   I
Sbjct: 38  AIETALCECGHSVERIGNYFALHKKLAAQKSWDLVFNIAEGLYGMGRESLVPCVLDAYGI 97

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG- 136
            YT S  LA +L++ K  +K ++  CGV      +VN         +  P   KP   G 
Sbjct: 98  NYTFSDPLAISLTLHKGMAKHILKGCGVATADFAVVNNLGDIDSINLGFPLFAKPAAEGT 157

Query: 137 --SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                   ++     +   +       +   +L+E+ ++G E T G++G  S  V+   +
Sbjct: 158 GKGISDRSIVWNSADLKR-VCTELLVRYSQPVLVEKLLEGREFTVGIIGSGSEAVSVGVM 216

Query: 195 PKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                       Y  +      + +  + +  D       +A  A++A+GCR   R D  
Sbjct: 217 EILPRNKEGIFVYSYENKENCESLLDYSLVYGDTADRCADVALRAYRALGCRDAGRVDVR 276

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            D        +E+N  PG+ P  S  P +   AG S+R+L+  +   A   
Sbjct: 277 LDG-DGIANVIELNPLPGLHPTHSDLPMIWTKAGMSYRQLICSIAAKAKAR 326


>gi|225850791|ref|YP_002731025.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
 gi|225645232|gb|ACO03418.1| D-alanine--D-alanine ligase [Persephonella marina EX-H1]
          Length = 325

 Score = 99.2 bits (245), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 67/285 (23%), Positives = 122/285 (42%), Gaps = 13/285 (4%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLHG--NFGEDGLVQAILELLE 76
            A AL   G  V   D +  +   L         + FN+ +G         + ++LE+L 
Sbjct: 34  IADALRKKGHYVEIADGNIEIIDRLKEFFSKGKGIVFNLSYGIQGEDRYAHIPSLLEMLG 93

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +PYT S      L++DK  +K ++    +P     + +    D  ++   P ++KPLK  
Sbjct: 94  VPYTGSSPEGHTLALDKAVTKILLKYYDIPTPDFHVFSPSDHDFSNVR-FPAIVKPLKEA 152

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            SLGI V+K    +   + + +   H D  ++E+++ G E + G++G+     T   +  
Sbjct: 153 LSLGITVVKDTDQMKKAVSRITEEFHQD-AIVEEFIRGREFSVGLIGNDEDVETLPVLEF 211

Query: 197 SDFYSYELKYSSLNSTH-----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                 +   ++    H     + PA IP    K +Q L+      +G R  +R+D   D
Sbjct: 212 DFGGDPDAIQTTYLKRHKPIEKICPADIPEKTAKRMQELSKKVFHVLGLRDYARTDIRMD 271

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++ LEIN Q  +     F   A  AGY++ +L+  ++  A
Sbjct: 272 LEGN-IYILEINSQASLGETGSFVTAAKTAGYTYEDLIEKILNTA 315


>gi|330874974|gb|EGH09123.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 154

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 44/157 (28%), Positives = 78/157 (49%), Gaps = 4/157 (2%)

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +     +       ++  +  Q+L+EQ++ G E T   +    L    +  P S  Y Y+
Sbjct: 1   MNSVDELIAA--WKAASTYDSQVLVEQWIQGPEFTVASLRGQVLPPIGLGTPHSF-YDYD 57

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            KY + ++ + +P  +     +E+++LA  A  AIG  G +R+D + D    K + LE+N
Sbjct: 58  AKYLASDTQYRIPCGLGDAQEQELKQLAARACDAIGIAGWARTDVMQDAQ-GKFWLLEVN 116

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             PGMT  S+ P  A  AG  F++L+L ++ D+   R
Sbjct: 117 TVPGMTDHSLVPMAARAAGLDFQQLVLAILADSVQAR 153


>gi|301167561|emb|CBW27144.1| putative D-alanine--D-alanine ligase [Bacteriovorax marinus SJ]
          Length = 336

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 114/296 (38%), Gaps = 22/296 (7%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75
              AL + G KV    V   + L+   +   KP + FN+L    G    D  V + LELL
Sbjct: 35  VIKALNNLGHKVEICGVISDLKLIKNAIDKFKPTVIFNLLEEFDGEVLFDQNVVSYLELL 94

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134
            +PYT        L+ DK  +K+++    +      +  +         +  P ++K L 
Sbjct: 95  RVPYTGCNPRGLMLARDKALAKKILLFHRIKTPHFQVFPKNRKVKTSKHLKYPLIVKCLT 154

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             +SL I       ++    + ++  +   G   ++E++++G E   GVMG+       +
Sbjct: 155 EEASLAIAKASIVYNEEKLKERVKYINQKIGVDAIVEEFIEGREFYVGVMGNYKTQTLPV 214

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIP------------LDIYKEVQRLAFLAHQAIGC 240
              K +      K    N                       ++  +++ +    ++ +  
Sbjct: 215 WELKFENVEKPEKELYSNRAKWNNKYRDRKGIKTEAATLSPELELKIKNICKKVYKHLNL 274

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G +R D   +P   +V+ +E+N  P +         A ++  ++ +L+  +++ A
Sbjct: 275 NGYARVDLRMNPA-GEVYVIEVNPNPNIAREDELASSALHSKVNYEQLITKILKLA 329


>gi|544147|sp|P35660|DDL_ANACE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|142171|gb|AAA22065.1| D-alanine:D-alanine ligase [Anaplasma centrale]
          Length = 205

 Score = 98.8 bits (244), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 58/150 (38%), Positives = 88/150 (58%), Gaps = 1/150 (0%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL GG S EREVSL+ GK  A AL   G + + +D++R     L  + PDL +N LHG
Sbjct: 15  IAVLCGGSSPEREVSLAGGKRIADALGRLGHRAAVVDLNRESAHQLLAMAPDLVYNALHG 74

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG    +L++L + YTHS + AS++ MDK+ +K V+ S G+      ++ +  + S
Sbjct: 75  GQGEDGCASGLLDILGLAYTHSRVAASSVGMDKVLTKHVLKSLGIDFPEFSVLTKEEVLS 134

Query: 121 QHLIS-PPYVIKPLKGGSSLGIIVIKKDQS 149
              +   P+VIKP+ GGS++G+  I     
Sbjct: 135 AKEVMPYPFVIKPICGGSTIGVHAIFSRSE 164


>gi|149194598|ref|ZP_01871694.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
 gi|149135342|gb|EDM23822.1| D-alanylalanine synthetase [Caminibacter mediatlanticus TB-2]
          Length = 341

 Score = 98.8 bits (244), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 63/331 (19%), Positives = 116/331 (35%), Gaps = 53/331 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGF-------KVSQIDVD--------------- 39
           A++ GG S E E+S+ S       L    F           ID D               
Sbjct: 4   ALIFGGSSFEHEISIVSAITIKDKLNIKYFIFLDSNRDFYLIDKDNMKSKYFASGEYKNS 63

Query: 40  -------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                        + +      L  D+  N++HG  GEDG + A+LE  +I      + A
Sbjct: 64  IKLEITKGGFKYKKGLLKKEFFLDFDVVINLIHGRDGEDGKIPAMLEFYKIKAITPNVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            ++S +K+ +K       V V    ++       +     P +IKP + GSS+G+ + K 
Sbjct: 124 CSVSYNKVLTKAYAKEMRVNVIEYEII----DSPKTKFDFPVIIKPARLGSSIGVSIAKN 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY--EL 204
              +      +      D +++E +++GIE        A  +     + K +   +    
Sbjct: 180 QDELNYAFDVAR--EFDDLIIVEPFIEGIEEYNLAGCKAGDEWIFSKLEKVEKKEFLDFD 237

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K     S   +     L+I ++ +      +  I    + R DF        ++  EIN 
Sbjct: 238 KKYMDFSRKEVKINENLEIKEKFKTEFKKIYNNIFKNALIRCDFFC--KDDIIYLNEINP 295

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            PG     +F          F+ ++  + + 
Sbjct: 296 IPGSMANYLFD--------DFKNVIDKLAKS 318


>gi|268679679|ref|YP_003304110.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
 gi|268617710|gb|ACZ12075.1| D-alanine/D-alanine ligase [Sulfurospirillum deleyianum DSM 6946]
          Length = 344

 Score = 98.4 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 129/331 (38%), Gaps = 50/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA------GFK--VSQIDVDRSVGLVL------ 46
           +AVL G  S E E+S+ S  A    L+         ++     I  D+            
Sbjct: 3   IAVLFGAQSFEHEISVVSAIALKKVLKSEIVYIFCDYERNFYLIPTDKITSKRFSSGEYK 62

Query: 47  --------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D+  N++HG  GEDG + A+L+   IPY    + A
Sbjct: 63  KDKALHVKQGGFYAKKMLGEEQISFDVMINLVHGRDGEDGKLSALLDFFGIPYIGPRMEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            ++S +K+ +K      GV V P   +     +    I+ P+++KPL+ GSS+GI ++K+
Sbjct: 123 CSISYNKLFTKLYAKEVGVNVLPY-QLLHKGSNEAISIAYPFIVKPLRLGSSIGIGIVKE 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   L    ++   D +LIE ++ G  E         S   + I  P+ + +    K
Sbjct: 182 EKELAYAL--DVAFEFDDTVLIEPFISGVKEYNLAGCKTDSFTFSIIEEPQKEAFLDFDK 239

Query: 206 YSSLNSTHVLPAKIPLDIY--KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                S      +  L++   KE+Q      +  +    + R DF    +   V+  EIN
Sbjct: 240 KYLDFSRTKRVNEASLEVTLEKEIQTSFIKLYDPLFLGALIRCDFFV--IDGVVYLNEIN 297

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             PG     +F          F  ++  +V 
Sbjct: 298 PVPGSMANYLFD--------DFDGVIKRLVN 320


>gi|21536607|gb|AAM60939.1| unknown [Arabidopsis thaliana]
          Length = 516

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 78/379 (20%), Positives = 130/379 (34%), Gaps = 80/379 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 77  VGLICGGPSAERGISLNSARSVLDHIQCDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 136

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 137 DFKLESLAQGFSSLSELAEHLVSAVDIVFXVIHGRFGEDGGIQELLESHNIPFVGTGSRE 196

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 197 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 256

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V            +       D++++E +++            G    C  + 
Sbjct: 257 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 316

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                              + F        +   T+  P + P+ + K ++  A L  Q 
Sbjct: 317 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 376

Query: 238 IGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +G R  +R D  +                   S  + + +IN+  GM   S   + A+  
Sbjct: 377 LGLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMEQTSFLFQQASKV 436

Query: 282 GYSFRELLLWMVEDASCLR 300
           G+S   +L  +V  A C R
Sbjct: 437 GFSHSNILRTIVHRA-CSR 454



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 486 VIFGGDTSERQVSVMSGTNVWVNLQR 511


>gi|57167797|ref|ZP_00366937.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
 gi|57020919|gb|EAL57583.1| D-alanine--D-alanine ligase [Campylobacter coli RM2228]
          Length = 346

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 47/327 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------- 40
           A+L GG S E E+S+ S       +         D   +   I  ++             
Sbjct: 4   AILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQK 63

Query: 41  -------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                               +L  D   N++HG  GEDG + ++LE  +I +    + AS
Sbjct: 64  EKELFLRQKAFYHKSLWSEKNLNLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS +K  +K    S GV      ++ +           P ++KP + GSS+GI + K +
Sbjct: 124 VLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQD-FTAHFPCILKPARLGSSIGISIAKNE 182

Query: 148 QSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + +         ++     +       +     C +  +    + E    K      +  
Sbjct: 183 KELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPRKKEFLDFKQKY 242

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN  
Sbjct: 243 LSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFIL--DNEVYLNEINPN 300

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           PG     +F          F +++  +
Sbjct: 301 PGSLANYLF--------KDFNKIIEQL 319


>gi|325981999|ref|YP_004294401.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
 gi|325531518|gb|ADZ26239.1| D-alanine--D-alanine ligase [Nitrosomonas sp. AL212]
          Length = 361

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 108/285 (37%), Gaps = 11/285 (3%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEI 77
            A A+ALE  G  V  IDV + +   L   K   DL FN   G   ++     +    E 
Sbjct: 32  AAVATALERVGADVEVIDVGKDIYHQLEKRKHQIDLVFNNAEGLEEKELREAIVPFFCEH 91

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-RFTMDSQHLISPPYVIKPLKGG 136
                   +    ++KM              P+         D    ++ P ++KP   G
Sbjct: 92  LGIPYTGSSPKTFINKMDKATAKRIVAYEGVPTAKFQLMVPGDQLKDLTFPLMVKPYSEG 151

Query: 137 ---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
                     +  +  +   +    S       L+E+++ G E T G++G+  L + EI 
Sbjct: 152 TSIGISQKSKVHNEAELTAAIAAVYSQC-DQAALVEEFLPGTEYTIGLIGNYVLPILEIN 210

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                 +         +  +   + +   D  +   ++A  AH+A+  R  +R DF    
Sbjct: 211 FANIPGHPQLRDPHVKSIENPYISHMAWTDQARNFAKMAIAAHEALEARDYNRMDFRVRE 270

Query: 253 LSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
              ++++LE NV PG+ P  +    M  + G + ++++  +V+ A
Sbjct: 271 --GQLYFLEANVIPGIHPTDADLTNMCRHVGIAHQDMVALIVDKA 313


>gi|213024194|ref|ZP_03338641.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
           serovar Typhi str. 404ty]
          Length = 77

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 25/64 (39%), Positives = 36/64 (56%), Gaps = 1/64 (1%)

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A +A+GC G  R D + D    + + LE N  PGMT  S+ P  A  AG SF +L++ +
Sbjct: 14  QAWKALGCTGWGRIDVMLD-SDGQFYLLEANTSPGMTSHSLVPMAARQAGMSFSQLVVRI 72

Query: 293 VEDA 296
           +E A
Sbjct: 73  LELA 76


>gi|325168553|ref|YP_004280343.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
 gi|325064276|gb|ADY67965.1| D-alanine-D-alanine ligase protein [Agrobacterium sp. H13-3]
          Length = 234

 Score = 98.0 bits (242), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 43/182 (23%), Positives = 83/182 (45%), Gaps = 10/182 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP + GSS+G+  +  +Q     L +     H  +LL E+++ G E+ C 
Sbjct: 49  EIALGLPLFVKPARQGSSVGVRKVSGNQEFAPALAEGF--KHDRKLLAEEFIRGREIECS 106

Query: 181 VM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           V+         +       A     +           +   +PA++P ++  +++  A L
Sbjct: 107 VLEDAKGGLFVSRPGEIIPAESHGFYSYDAKYIDDDGAALTVPAELPPEVETKIRETAAL 166

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +A+GC G++R DF            E+N  PG T +S++ +  A +G S+ E++  +V
Sbjct: 167 AFRALGCDGMARVDFFLTE-DMAFLVNEVNTIPGFTDISMYAKAMAASGVSYPEVIDRLV 225

Query: 294 ED 295
           E 
Sbjct: 226 EH 227


>gi|260461867|ref|ZP_05810113.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|319785391|ref|YP_004144867.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|259032508|gb|EEW33773.1| D-alanine--D-alanine ligase [Mesorhizobium opportunistum WSM2075]
 gi|317171279|gb|ADV14817.1| D-alanine--D-alanine ligase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 340

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 65/287 (22%), Positives = 122/287 (42%), Gaps = 13/287 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHG--NFGEDGLVQ 69
           ++  +AL++ G +    D D+ +   L     PD       + FN+  G      +  V 
Sbjct: 32  ESVVAALQEGGHETLICDGDKGLLATLERFMPPDRQSRPSGIVFNLAWGSQGERPEAGVP 91

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
           A+LE+  +P T  G L   L+ DK+  K+++   GVP     ++   T  +   +  P V
Sbjct: 92  AMLEMAGVPCTGPGPLGYGLAFDKVIIKRLIRDRGVPTPNFRVMRLGTETT-GDLRFPLV 150

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           +KP    +S G+ +  +   +   +    +  +    L+E+Y+DG E+T  ++G+  L+V
Sbjct: 151 VKPRYECASFGLQLAHEPAQLRQAVEVIVT-LYAQDALVEEYIDGREITVALLGNRELEV 209

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +                     + P +I   +   +Q ++        CR  +R D  
Sbjct: 210 LPLVEYDFRDREKRCLTREAKQRRICPGQIGSRLATVLQDISVATFLECQCRDYARVDLR 269

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D  S + F LEIN  P +   + +   A  AGY+F  L+  +++ A
Sbjct: 270 ID-RSGQAFVLEINNMPSLRMRASYVLAARTAGYTFSSLVNRILDVA 315


>gi|296128393|ref|YP_003635643.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
 gi|296020208|gb|ADG73444.1| D-alanine/D-alanine ligase [Cellulomonas flavigena DSM 20109]
          Length = 333

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/322 (23%), Positives = 126/322 (39%), Gaps = 49/322 (15%)

Query: 1   MAVLMGGISSEREV--------------SLSSGKACASALEDAGFKVSQIDVDRSVGLV- 45
           +AV+ GG ++E +V              S                 V ++ V R      
Sbjct: 20  VAVVGGGANAEHDVSLASAAAVRAALTPS---------------HDVVELTVARDGSWWS 64

Query: 46  ----LAHLK-------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
               L   +        D+    +HG  GEDG + A+ +L  +    SG+ A A+ MDK 
Sbjct: 65  GGDALTFAQAVGLVAACDVLLPAVHGPRGEDGTLAALADLAGVACVGSGVRAGAVGMDKW 124

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +K V ++ GV V    LV             P V+KP+  GSS G+  +   +   L  
Sbjct: 125 VTKLVAAAVGVAVADGRLVRGVAEACADPR-LPAVVKPVSSGSSHGVRRVDTVE--DLAD 181

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS---YELKYSSLNS 211
             +++    D++L+E+ V G E+   V+  A          +                ++
Sbjct: 182 AVAAALELDDRVLVEEVVTGREIDVAVLRRADGTTLVSPALEIGHAGAVFDTATKYDGSA 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V+PA +     + +   A     A+GC G++R+DF            E+N  PGMT  
Sbjct: 242 RFVVPAPLEPADAEALAAAALSVVDALGCDGVARADFFLTARG--PVLNEVNTMPGMTAH 299

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S  P M A AG ++ EL+  +V
Sbjct: 300 SQVPVMLAAAGLTYAELVAELV 321


>gi|168699147|ref|ZP_02731424.1| D-ala D-ala ligase [Gemmata obscuriglobus UQM 2246]
          Length = 332

 Score = 98.0 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/311 (24%), Positives = 132/311 (42%), Gaps = 29/311 (9%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAI 71
           S ++ KA A  L   G  V+ +   R++   L +  PDL FN   G   +   +  V A+
Sbjct: 21  SPATVKAIADVLASLGHTVALLGDGRALIESLLNAPPDLVFNFAEGAGVSRSREARVPAV 80

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------------LVNRFTMD 119
            E+L +PYT S   A A+++DK  ++++  S G+ V   I                    
Sbjct: 81  CEMLGVPYTGSDPFALAVALDKDATRRLAESYGLTVPKGITLAPVAGEYDGDFAEFAPAL 140

Query: 120 SQHLISPPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               ++ P + KP   GSS    G  +I         +      N+   +L+E+Y+ G E
Sbjct: 141 EDAGLTLPVIAKPTCEGSSKGIRGKCLITSAAEFGPAV-VELWRNYQQPVLVEEYIAGDE 199

Query: 177 LTCGVMGDASLDVT--EIAVPKSDFYSYELKYSSLNST-----HVLPAKIPLDIYKEVQR 229
           +T G+ G            VPK    S+        +      +V PAK+P ++   ++ 
Sbjct: 200 ITIGLYGSDPPQPIGVMQIVPKQSPESFVYSLEVKRNWADAVDYVAPAKLPREVLHAIEA 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-IFPEMAAYAGYSFREL 288
            A   +  +GCR ++R DF         ++LEIN  PG+ P S     +A   G ++ EL
Sbjct: 260 DAMALYAGLGCRDVARLDFRV--RDGVPYFLEINPLPGLNPDSGDLCYLAYRMGLTYPEL 317

Query: 289 LLWMVEDASCL 299
           +  +++ A+  
Sbjct: 318 IGLILDSAAAR 328


>gi|296272621|ref|YP_003655252.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
 gi|296096795|gb|ADG92745.1| D-alanine/D-alanine ligase [Arcobacter nitrofigilis DSM 7299]
          Length = 344

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 56/311 (18%), Positives = 117/311 (37%), Gaps = 42/311 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           +A++ GG S E E+S+ S  A    ++    +   +D +R    +               
Sbjct: 3   IAIVFGGSSYEHEISIVSAIAMKDVIKSE-LEYIFLDENREFYHIPTKTIKSKLFSTGEY 61

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                 +++ D+  N++HG  GEDG V ++ E  +I Y    + 
Sbjct: 62  KKCDKLNIKKGGFSKKAMFGEKNVEFDIVLNLIHGGDGEDGTVASLFEFFDIKYIGPRVG 121

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A ++S +K  +K   SS G+   P     +F   S      P ++KP+  GSS+G+ ++K
Sbjct: 122 ACSVSFNKFLTKGYASSLGIKTIPYKYFTKFDEISVDE--FPVIVKPVTLGSSIGVSIVK 179

Query: 146 KDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             + +   L  +  +++    +  +    +       +  +    + E           +
Sbjct: 180 TKEELSYALDVAFEFDNAVLIETFVPNIKEYNLAGYKIGNEIKYSIIEEPQKADFLDFDK 239

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +  V  A I  ++ +++++     +       + R DF    +  +V+  EIN
Sbjct: 240 KYLDFARTERVSVANISDELKEKLKKAFATIYNTTFNDAMIRCDFFV--IDDEVYLNEIN 297

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 298 PIPGSMANYLF 308


>gi|297833634|ref|XP_002884699.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330539|gb|EFH60958.1| D-alanine--D-alanine ligase family [Arabidopsis lyrata subsp.
           lyrata]
          Length = 943

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 78/378 (20%), Positives = 133/378 (35%), Gaps = 79/378 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 81  VGLICGGPSAERGISLNSARSVLDHIQGDGISVSCYYIDPDLKAFAISSAQVYSNTPSDF 140

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 141 DFKLESLAQGFSSLSKFAEHLVSAVDIVFPVIHGRFGEDGGIQELLESQNIPFVGTGSRE 200

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 201 CIRAFDKYEASLELKELGFMTVPNYLVQGTEVDKSEIAQWFTDNQLDLEMGKVVVKPAKA 260

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V           ++       D++++E +++            G    C  + 
Sbjct: 261 GSSIGVKVAFGVNDSIKKAIELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSGCHPVV 320

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                       +      + F        +   T+  P + P+ + K ++  A L  + 
Sbjct: 321 LMPTEVQLQFHGSGDLQENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFKK 380

Query: 238 IGCRGISRSDFLFD---------------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +G R  +R D  +                P S  + + +IN+  GM   S   + A+  G
Sbjct: 381 LGLRDFARIDGWYLAPNSNLSSASETLGGPESGDIIFTDINLISGMEQTSFLFQQASKVG 440

Query: 283 YSFRELLLWMVEDASCLR 300
           +S   +L  +V  A C R
Sbjct: 441 FSHSNILRTVVHRA-CSR 457



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              P  +  +  +  ++   L  + +G  G SR D      + +V  +E+N  PGMTP +
Sbjct: 853 PPPPTIMSKEALERCKQRIELIAETLGLEGFSRIDAFVHVETGEVLVIEVNTVPGMTPST 912

Query: 273 IFPEMAAY 280
           +  + A  
Sbjct: 913 VLIQQALA 920



 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 489 VIFGGDTSERQVSVMSGTNVWINLQR 514


>gi|26452707|dbj|BAC43436.1| unknown protein [Arabidopsis thaliana]
          Length = 844

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 77/378 (20%), Positives = 123/378 (32%), Gaps = 79/378 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 43  GLVLAHLK----------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----------GIELTCGVMGD 184
           GSS+G+ V                      ++     D           G    C  +  
Sbjct: 260 GSSIGVKVAFGVNDSIKKATLILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVVL 319

Query: 185 A------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                             + F        +   T+  P + P+ + K ++  A L  Q +
Sbjct: 320 MPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQKL 379

Query: 239 GCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           G R  +R D  +                   S  + + +IN+  GM   S   + A+  G
Sbjct: 380 GLRDFARIDGWYLAPNSNLSSPVSETLGGTKSGDIIFTDINLISGMKQTSFLFQQASKVG 439

Query: 283 YSFRELLLWMVEDASCLR 300
           +S   +L  +V  A C R
Sbjct: 440 FSHSNILRTIVHRA-CSR 456



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 488 VIFGGDTSERQVSVMSGTNVWVNLQR 513


>gi|305432181|ref|ZP_07401345.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
 gi|304444724|gb|EFM37373.1| D-alanine-D-alanine ligase [Campylobacter coli JV20]
          Length = 346

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 57/327 (17%), Positives = 113/327 (34%), Gaps = 47/327 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------------- 40
           A+L GG S E E+S+ S       +         D   +   I  ++             
Sbjct: 4   AILFGGNSYEHEISIVSAVVLKKVINTDLTFIFCDEKRRFYLIPSEKMNSKTFSGGAYQK 63

Query: 41  -------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                               +L  D   N++HG  GEDG + ++LE  +I +    + AS
Sbjct: 64  EKELFLRQKAFYHKSLWSEKNLDLDCVINLIHGRDGEDGKIASLLEFFDIKFIGPRVEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS +K  +K    S GV      ++ +           P ++KP + GSS+GI + K +
Sbjct: 124 VLSFNKEFTKLYAQSVGVKTLDYQMLRKSQKQD-FTAHFPCILKPARLGSSIGISIAKNE 182

Query: 148 QSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + +         ++     +       +     C +  +    + E    K      +  
Sbjct: 183 KELDYAKDVGFEFDTDILVEDFKSNIKEYNLAGCMIKDEFIFSIIEEPKKKEFLNFEQKY 242

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN  
Sbjct: 243 LSFSGHNELIEADLSEELKQKLKDNFAKIYNPLFKGALIRCDFFIL--DNEVYLNEINPN 300

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           PG     +F          F +++  +
Sbjct: 301 PGSLANYLF--------KDFNKIIEQL 319


>gi|94968579|ref|YP_590627.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
 gi|94550629|gb|ABF40553.1| D-alanine--D-alanine ligase [Candidatus Koribacter versatilis
           Ellin345]
          Length = 344

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 61/302 (20%), Positives = 119/302 (39%), Gaps = 24/302 (7%)

Query: 20  KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILEL 74
           +   +ALE  G +     +D  +     LA    DL FN+     G+  ++  V A L+L
Sbjct: 42  EEIFAALEKLGHEPSYHILDGHQQSLFALAKSGTDLIFNLTESYDGDDTKEMHVTAFLDL 101

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           + IPYT +G     L+ DK  +K++ +  G+         R  +D  H +S P ++KP  
Sbjct: 102 VNIPYTGTGPHGHMLAQDKSLAKKMFAFHGIQSPYFATAYRGIVDHAHDVSFPLIVKPTS 161

Query: 135 GGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---- 187
              S+GI    V+   + +   +    +       LIE+Y++G E+   ++G        
Sbjct: 162 EDGSIGIDAAAVVSSVKELMERVAYIQA-EFDSPALIEEYIEGREIYSAILGSYETANAL 220

Query: 188 ----------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                           +   D    +   +   +   +   +  +   ++   A  A++A
Sbjct: 221 PLVELDLSKLPKGMPKIASQDVKFEKDTEAYKKTKSAVAEDLDEETETKLTATAIKAYRA 280

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +  R   R D        +V+ +E N  P ++    F   A  +G S+ +++  +V+ A 
Sbjct: 281 VKLRDYGRIDMRLSTK-GEVYVIEANPNPWLSSGQEFAMAAKKSGLSYTQMIGEIVDHAI 339

Query: 298 CL 299
             
Sbjct: 340 AR 341


>gi|325972391|ref|YP_004248582.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
 gi|324027629|gb|ADY14388.1| D-alanine--D-alanine ligase [Spirochaeta sp. Buddy]
          Length = 325

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/294 (22%), Positives = 123/294 (41%), Gaps = 14/294 (4%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAI 71
           S+ +  A  +AL+  G +  +I   +++   L    + DL FN+  G FG   + ++ A+
Sbjct: 28  SIVTIDAIDAALQKLGHQTVRIGNVKALVGYLGEGKRCDLVFNIAEGLFGLLRESVIPAL 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+  +IPY  S     A+ + K  +K+VV   GV      +++      Q  +  P  +K
Sbjct: 88  LDAYQIPYVFSDSFVLAICLHKGFTKEVVRKAGVATADFCVLSSSDDWKQVSLPYPLFLK 147

Query: 132 PLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           P+ GG          +   + +   +  +    +   +L+E Y+ G E T G+ G     
Sbjct: 148 PVAGGTGIGITASSKVTNPKDLQK-VSGAMLAAYQQPVLVETYLGGREFTVGITGTGDEA 206

Query: 189 VTEIAVPKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +   +     +S     Y  K      T     +     +K  + +A  A +A+GCR  
Sbjct: 207 QSTGVMEIIIDHSSDGGIYSYKTKQEYETTTRYERPDESAWKASEAVALAAWRALGCRDG 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            R D   D     V +LE+N   G+ P+ S  P ++   G  + EL+  ++  A
Sbjct: 267 GRIDVKMDEK-GVVHFLEVNPLAGLHPIDSDLPILSRMHGLGYDELIARIMHSA 319


>gi|34556865|ref|NP_906680.1| D-alanyl-alanine synthetase A [Wolinella succinogenes DSM 1740]
 gi|39930816|sp|Q7MA71|DDL_WOLSU RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|34482580|emb|CAE09580.1| PUTATIVE D-ALANINE--D-ALANINE LIGASE [Wolinella succinogenes]
          Length = 345

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 66/312 (21%), Positives = 113/312 (36%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG S E E+S+ S  +    L         +D +R    +                
Sbjct: 4   AVIFGGASYEHEISIVSAISLKKILPALEH-FIFVDGNRDFYWIPASEMRSKHFADGIYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 +  D A N++HG  GEDG + ++LE   IP+    I A
Sbjct: 63  KNPKLFLRPGGFYAKGLWGEKRVPFDTALNLIHGGDGEDGKLASLLEFFRIPFIGPRIEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S +S +K  +K      GV   P +L  R     +     P ++KPL+ GSS+G+ + K 
Sbjct: 123 SVMSFNKHLTKLYAKERGVKTLPYLLA-RKNEKREFGNEFPLIVKPLRLGSSIGVSIAKN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q +   L  +      +  L+E ++ GI+         + +     + +     +    
Sbjct: 182 RQELDYALDVAF--EFDEAALLEPFMQGIKEYNLAGCKINGEYHFSIIEEPQKKEFLDFD 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEI 262
                       +  D+ +  +RL   A   +        + R DF     +++VF  EI
Sbjct: 240 KKYLDFSRTQKLLKADLSEASERLLKEAFIKLYDDSFEGSLIRCDFFV--QNQEVFLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NPIPGSLANYLF 309


>gi|217032140|ref|ZP_03437639.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298736440|ref|YP_003728966.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
 gi|216946130|gb|EEC24739.1| hypothetical protein HPB128_186g6 [Helicobacter pylori B128]
 gi|298355630|emb|CBI66502.1| D-alanine-D-alanine ligase [Helicobacter pylori B8]
          Length = 347

 Score = 97.6 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52
            VL GG S E E+S+ S  A   AL+D                I+         A +K  
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKDRIKHFIFLDEDHHFYLIEASNMHSKYFAQIKEK 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     L  N++HG  GEDG + ++LE   I +    + A
Sbjct: 64  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K   ++ GV     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYANNLGVKTLGHVLLNEKNRANALDLMNFNFPFIIKPNSAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P       + ++++      +  +    I R DF       KV+  
Sbjct: 242 DFKQKYLDFSRAKSPKANLSSALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NKVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|170727019|ref|YP_001761045.1| D-alanyl-alanine synthetase A [Shewanella woodyi ATCC 51908]
 gi|169812366|gb|ACA86950.1| D-alanine--D-alanine ligase [Shewanella woodyi ATCC 51908]
          Length = 359

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 36/309 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L       + ++++D                  + +        P
Sbjct: 40  EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 99

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  
Sbjct: 100 WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 159

Query: 109 PSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N                     IK    GSS+G   +     +   L Q+   + 
Sbjct: 160 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAF--SF 217

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPA 217
              +++E+ ++  EL           V           +    +    + +      + A
Sbjct: 218 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 277

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 278 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 336

Query: 278 AAYAGYSFR 286
               G  F 
Sbjct: 337 LQNHGDDFT 345


>gi|189083033|sp|A8Z6L3|DDL_CAMC1 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|158604979|gb|ABW74793.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter concisus
           13826]
          Length = 346

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 68/312 (21%), Positives = 115/312 (36%), Gaps = 47/312 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------ 49
            V+ G  S E E+S+ S       +   G K    D +R   L+                
Sbjct: 4   GVIFGAKSFEHEISIVSAI-VLKNVLKQGLKFIFCDANRDFYLIEQKDMRANFFSSGKYK 62

Query: 50  -----------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                  + D+  N++HG  GEDG + A+ E   + Y    + A
Sbjct: 63  NSKKLSLAKGGFYTHSLFGANKVECDVIINLIHGMDGEDGKIAALFEFYGVKYIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SALS +K  +K +    GV      +    T  S+     P ++KP + GSS+G+ V+  
Sbjct: 123 SALSYNKELTKFLAQKAGVKALDYEM---LTRQSEPKFHYPIILKPARLGSSIGVSVVHD 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFYSYE 203
           D  +     +  ++     +L+E ++ G++                      K +F  YE
Sbjct: 180 DSEL--AYAKDVAFEFDKDVLVEPFIKGVKEYNLAGCRIDGKIKFSIVEEPKKKEFLDYE 237

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262
            KY S ++ + +      +  K+  +  F      G  G I R DF    +  +V+  EI
Sbjct: 238 QKYLSFSNENKVKEAEISEELKQKLKFNFSKIYDCGFDGAIIRCDFFV--IDDEVYLNEI 295

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 296 NPNPGSLANYLF 307


>gi|224372975|ref|YP_002607347.1| D-alanyl-alanine synthetase A [Nautilia profundicola AmH]
 gi|223589885|gb|ACM93621.1| D-alanine--D-alanine ligase [Nautilia profundicola AmH]
          Length = 344

 Score = 97.2 bits (240), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 125/331 (37%), Gaps = 56/331 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
           A+L GG S E E+S+ S       ++    +   ID +R++ LV                
Sbjct: 4   ALLFGGNSFEHEISIVSAITLKDKIKKHTLEFIYIDQNRNMYLVDKQNMKSKYFASGEYK 63

Query: 49  ------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D   N++HG  GEDG +  ILE   I      +
Sbjct: 64  NSQKIEITKGGFKYTKGLLKKDVFLNYDAVINLIHGKDGEDGKLAGILEFFNIKSITPNV 123

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS +S +K+ +K      GV V    ++     + +     P +IKP + GSS+G+ V+
Sbjct: 124 EASVISYNKVLTKAYAKEIGVNVIDYEII----TEPKSSFDFPIIIKPARLGSSIGVSVV 179

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG---DASLDVTEIAVPKSDFYS 201
           K  +        +      D ++ E +++GIE             +      V KSDF  
Sbjct: 180 KTQEEFDYAFDVAR--EFDDLIIAEPFIEGIEEYNLAGCLAGGEFMLSNIEKVEKSDFLD 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +E KY   +  +V+ + +  D+ + +++     + +     I R DF        V+  E
Sbjct: 238 FEKKYMDFSRKNVMLSDVDKDLTERIKKTFKKIYNSTFKNAIIRCDFFV--KEGSVYLNE 295

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IN  PG     +F          F ++L  +
Sbjct: 296 INPIPGSMANYLFD--------DFDDVLEKL 318


>gi|190359231|sp|B1KI99|DDL_SHEWM RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
          Length = 335

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 58/309 (18%), Positives = 114/309 (36%), Gaps = 36/309 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     ++L       + ++++D                  + +        P
Sbjct: 16  EHAISLMSADFLETSLAKEPEINLLRVELDGQGHYRTQDGRSCELTNRKEIRFAAEEQAP 75

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  +L+++P+      +S+   +K+ +K   S+ GVP  
Sbjct: 76  WPVDYVIPCIHGFPGETGDIQSYFDLIKLPFFGCDSESSSNCFNKVTAKMWFSALGVPNT 135

Query: 109 PSILVN------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N                     IK    GSS+G   +     +   L Q+   + 
Sbjct: 136 PYIFLNELNQESIAQTKQALENWGSIFIKAASQGSSVGCYRVDSQDELVSSLEQAF--SF 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPA 217
              +++E+ ++  EL           V           +    +    + +      + A
Sbjct: 194 SPYVIVEKTINARELEVAAYELNGEIVATKPGEIICASNTFYSFDEKYAANSKAETKVEA 253

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +  ++ +++Q  A    + +    +SR DF       ++   EIN  PG+TP+S+FP+M
Sbjct: 254 DVSEEVAQQIQAYAIKVFKGMKLSHLSRIDFFLTE-DNEILLNEINTFPGLTPISMFPKM 312

Query: 278 AAYAGYSFR 286
               G  F 
Sbjct: 313 LQNHGDDFT 321


>gi|116748158|ref|YP_844845.1| D-alanine--D-alanine ligase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697222|gb|ABK16410.1| D-alanine--D-alanine ligase [Syntrophobacter fumaroxidans MPOB]
          Length = 326

 Score = 97.2 bits (240), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 74/309 (23%), Positives = 127/309 (41%), Gaps = 25/309 (8%)

Query: 7   GISSEREVSLSSGK--------ACASALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNV 57
           G S E      + +        A  SAL D  F+  +I   R++   LA   + DL FN+
Sbjct: 17  GYSDE-----ETAEFDRPETIDAIESALRDLKFETDRIGHVRNLVRRLAVGERWDLVFNI 71

Query: 58  LHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             G   FG +  + A+L+   IPYT S  L  +LS+ K  +K V+ + G+P    +++  
Sbjct: 72  AEGLAGFGREAAIPALLDAYGIPYTFSDPLVLSLSLHKGMAKNVLRNMGIPTADFVVIQD 131

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD--QSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +      I  P   KP+  G+  GI    +   Q   +   +     +   +LIE+++ 
Sbjct: 132 VSETEAIGIPFPVFAKPVAEGTGKGIDAASRIGTQEELVAKCRQLLEVYRQPVLIEKFLP 191

Query: 174 GIELTCGVMGDASLDVTEIAVPKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           G E T G++G  +       +        +  +Y           V        I +   
Sbjct: 192 GREFTVGLVGTGAKTEVVGVMEVILKDGAERDAYSYSNKEHYERRVEYRLAEGSIARLAA 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRE 287
           R++  A + +GCR   R D   D       ++E+N   G+ P  S  P ++  AG S+ E
Sbjct: 252 RISVEAWRKLGCRDGGRIDLRCDER-NVPSFVELNPLAGLHPVHSDLPILSRLAGMSYVE 310

Query: 288 LLLWMVEDA 296
           L+  ++  A
Sbjct: 311 LIGRIMASA 319


>gi|310658242|ref|YP_003935963.1| d-alanine-d-alanine ligase a [Clostridium sticklandii DSM 519]
 gi|308825020|emb|CBH21058.1| D-alanine-D-alanine ligase A [Clostridium sticklandii]
          Length = 306

 Score = 96.9 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 81/296 (27%), Positives = 128/296 (43%), Gaps = 49/296 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           + ++ GG S+E EVSL S       L      V  I +DR                    
Sbjct: 3   IGLIFGGKSAEYEVSLQSAMHIYKRLNKDVHNVYLIGMDRDGFMHYFDGSIEEVSDGSWF 62

Query: 42  -------VGLVLAHLKP------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
                  V L     KP            +L F VLHG +GEDG +Q +LEL  IPY   
Sbjct: 63  DKKTSAEVILYSNKKKPGIYDNDKVIAELELVFPVLHGPYGEDGKLQGLLELSGIPYVGC 122

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH------LISPPYVIKPLKGG 136
            +LASA  MDK  +K++ S  G+   P I    +    +        +  P  IKP   G
Sbjct: 123 SVLASANGMDKDMAKKIFSYEGINQVPHITCYSYEQTQEIVSRAEANLGYPCFIKPANMG 182

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---IA 193
           SS+GI   K  Q + L +    ++ +  +++IE+ V+  E+   V+G+            
Sbjct: 183 SSVGISKAKDKQQLVLAM--QKAFEYDHKIIIEKGVNAREIEVAVLGNCDNIRISVAGEI 240

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +P  +FY Y+ KY S  S  ++PA +  +  +++Q +A+ A++ +   G+ R  F 
Sbjct: 241 IPSDEFYDYDAKYKSNASQLIIPADLSFEADRQIQDMAYRAYKGLNAEGLCRIRFF 296


>gi|322378889|ref|ZP_08053306.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
 gi|321148699|gb|EFX43182.1| D-alanine--D-alanine ligase [Helicobacter suis HS1]
          Length = 350

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 56/335 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 6   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 65

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H                 +  N++HG  GEDG + + L+   + +    +  
Sbjct: 66  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 126 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 185

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKS 197
            + I    +    +    Q+LIE +  G++                     V E    K 
Sbjct: 186 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVEEPHKKE 243

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                E       +  V  A I   + ++++++  L +       I R DF    ++ +V
Sbjct: 244 WLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEEV 301

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  EIN  PG     +F          F  LL  +
Sbjct: 302 YLNEINPIPGSLAHYLFE--------DFSSLLEQI 328


>gi|210134940|ref|YP_002301379.1| D-alanyl-alanine synthetase A [Helicobacter pylori P12]
 gi|226696388|sp|B6JLX1|DDL_HELP2 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|210132908|gb|ACJ07899.1| D-alanine:D-alanine ligase A [Helicobacter pylori P12]
          Length = 347

 Score = 96.9 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 70/314 (22%), Positives = 121/314 (38%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDV-------------D 39
            VL GG S E E+S+ S  A    L+D                I+               
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEVLKDRIKHFIFLDENHHFYLIEASNMHSKYFAQIKEK 63

Query: 40  RSVGLVLAH-------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   L+LAH             ++  L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIKFNFPFIVKPSNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|322380385|ref|ZP_08054591.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
 gi|321147175|gb|EFX41869.1| D-alanyl-alanine synthetase A [Helicobacter suis HS5]
          Length = 348

 Score = 96.5 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 73/335 (21%), Positives = 122/335 (36%), Gaps = 56/335 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID-------------VD 39
            +L GG S E E+S+ S  A    L+         D   K   ID               
Sbjct: 4   GLLFGGKSYEHEISIVSAVALKEVLDAQISSFIFLDGAHKFYLIDKKDMRSHFFSSGQYK 63

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +S  LVL H                 +  N++HG  GEDG + + L+   + +    +  
Sbjct: 64  KSPELVLKHGGFYTHGLLGGKGISMSVLINLIHGGDGEDGKIASFLDFFGVSFIGPRVEG 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
             LS  K  +K +    G+ + P I + +  + +   +  P ++KP + GSS+GI VIK 
Sbjct: 124 CVLSYSKYFTKMLAKEKGINILPYIFLEQHDIGALQNLDYPLIVKPNRLGSSIGIRVIKD 183

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---------LDVTEIAVPKS 197
            + I    +    +    Q+LIE +  G++                     V E    K 
Sbjct: 184 AKDI--AYVLDEVFEFDSQVLIEPFKQGVKEYNLAGCKIQSEEEEGKFVFSVVEEPHKKE 241

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                E       +  V  A I   + ++++++  L +       I R DF    ++ +V
Sbjct: 242 WLGFEEKYLDFGRTQKVKQADISSHLEEKMRQIFQLIYDPFFVGAIIRCDFFV--INEEV 299

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  EIN  PG     +F          F  LL  +
Sbjct: 300 YLNEINPIPGSLAHYLFE--------DFSSLLEQI 326


>gi|291276693|ref|YP_003516465.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
 gi|290963887|emb|CBG39723.1| putative D-alanine--D-alanine ligase [Helicobacter mustelae 12198]
          Length = 344

 Score = 96.5 bits (238), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 63/312 (20%), Positives = 115/312 (36%), Gaps = 44/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------- 48
            +L GG S E E+S+ S     + L+        +D +     + +H             
Sbjct: 4   CILFGGASWEHEISIVSAITLKNVLKQENLLFIFLDEEHRFYHIQSHQMQADFFAQKKHK 63

Query: 49  ----------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ D+  N++HG  GEDG +  +L+   IPY    + A
Sbjct: 64  SQKPLHLDRRGFFTSGFFGKNPLEFDILLNLVHGADGEDGTLAGLLDFYHIPYIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K+ +K      G+P  P + + +   + +  +  P +IKP + GSS+GI + K 
Sbjct: 124 SVLSFNKLYTKIFAKERGIPTLPFVHLTQ-HQEQKIPLDFPLIIKPARLGSSIGISIAKD 182

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            QS+   L Q+    +   +L+E +  GI+           D     + +     +    
Sbjct: 183 PQSLNFALDQAF--EYDSSVLVEPFFSGIKEYNLAGCKIQGDFVFSLIEEPGKKEFLDFE 240

Query: 207 SSLNSTHVLPAKIPLDIYKE----VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                          ++  +    +Q+     ++      + R DF       K++  EI
Sbjct: 241 DKYLDFSRDSKIENANLSAQNVTKMQKHFEALYENCFEGALIRCDFFIHE--DKIYINEI 298

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 299 NPIPGSMANYLF 310


>gi|149922083|ref|ZP_01910523.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149817020|gb|EDM76502.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 674

 Score = 96.5 bits (238), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 79/306 (25%), Positives = 132/306 (43%), Gaps = 14/306 (4%)

Query: 7   GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFG 63
           G  SE E  S  +  A A AL   G  V +++    +   L   K  LAFN+  G     
Sbjct: 353 GDDSEAEFDSRETVDALADALGQLGLDVVELEATPDLVHTLPRAKLALAFNIAEGSRGRC 412

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            + +V A+LELL +PYT S  +A AL++DK  +K  V++ G+      ++ R +      
Sbjct: 413 RELIVPALLELLGVPYTGSDAVAMALTLDKSLAKAAVAAAGLRTPSWAVLRRGSDPLPTG 472

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGV 181
           +  P  +KP+  GSS GI              ++ +    +   +L+E+Y+ G E T G+
Sbjct: 473 LRYPLFLKPIAEGSSKGIDDGAVVLDERSLRTRAWALLARYHQPVLVEEYLPGREFTVGI 532

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNS-------THVLPAKIPLDIYKEVQRLAFLA 234
           +      V        D       Y   +         +  PA++  D+   ++  A  A
Sbjct: 533 VEALHPAVLAPMEIIHDDSDSHAFYGFESKLSADAGVRYQAPAQVDADLDDALRSAAQAA 592

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMV 293
            +A+GCR ++R D   D    +  ++E N  PG++P  S    +AA  G  +  L+  +V
Sbjct: 593 FRALGCRDVARIDLRLDAA-GEAHFIECNPLPGLSPGWSDLCMIAAAEGIDYAGLVAGLV 651

Query: 294 EDASCL 299
             A   
Sbjct: 652 APALAR 657



 Score = 78.8 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 84/297 (28%), Positives = 130/297 (43%), Gaps = 19/297 (6%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGL--VQAILELL 75
           A A+ L D G +V   D+   +G  +A L+   PDL  N   G  G        A+ E L
Sbjct: 28  AIATMLRDLGHQVGLFDMSNELGQAVAELERYAPDLVLNTAEGQGGPLREALFPALFEEL 87

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---LVNRFTMDSQHLISPPYVIKP 132
            + YT SG    AL++DK R+K+VV++ GVP   S                   P +IKP
Sbjct: 88  GLAYTGSGPTTCALTLDKHRTKEVVAALGVPTPRSFLIEDYTELADIPASSWPIPAIIKP 147

Query: 133 LKGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG------VMG 183
              GSS G     +    + +PL L+          +L+E +V G ++T         + 
Sbjct: 148 NFEGSSKGVSGHSIAHDPREVPL-LVSRLLARFEAGVLVEAFVPGRDVTVPWLEVVGALP 206

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A     +  V     Y YELK          PAK+   + +++ R++     A+  R +
Sbjct: 207 AAEYSFGDAPVDAQQIYDYELKQDGGAVQVQTPAKLAPALARKLARMSERIVAALNVRDL 266

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R DF   P S + ++LEIN  P + P +   E AA AG S  +++L  V  ++  R
Sbjct: 267 ARLDFRITP-SGEPYFLEINALPSLEPGASIYESAALAGLSQPDMVLGSVIASAVRR 322


>gi|327399078|ref|YP_004339947.1| type 11 methyltransferase [Hippea maritima DSM 10411]
 gi|327181707|gb|AEA33888.1| Methyltransferase type 11 [Hippea maritima DSM 10411]
          Length = 661

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 25/298 (8%)

Query: 24  SALEDAG-FKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAIL----ELLE 76
            AL +   ++   ++   ++   L  LKP  D  FN+    F  +   +  +    E+L 
Sbjct: 331 KALNELKNYRFIYVNNHDTLISDLIKLKPKIDFVFNLCDEGFNNEPTKELYIPALLEMLN 390

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT S     A   DK   + V    G+PV   ILV       +   + P ++KP  G 
Sbjct: 391 IPYTGSNPQCLAYCYDKSLIRGVAKEMGIPVPKGILVTPDKTVLELPFNFPAIVKPNFGD 450

Query: 137 SSL---GIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDG----------IELTCGVM 182
           SS       V+     +   L      + H   +LIE+++ G          I     ++
Sbjct: 451 SSFGITKKSVVYTMDELIEVLSEIKEQFGHDKPVLIEEFLTGSDLTIGIIGNISGNYKIL 510

Query: 183 GDASLDVTEIAVPKSDFYSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                D +++         YE K+   S   +     A++  +  + +   +    + + 
Sbjct: 511 PIIEEDYSKLPDDLPKICGYEAKWLPGSPYWNNTSRLAQLDEETERIIVESSLKLWERLN 570

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                R D+  D  S K   LE+N  PG        +MA  AG S+ E+L  ++E A+
Sbjct: 571 VNDYCRFDWRLDSES-KPKLLEVNPNPGWCWDGHLAKMAKIAGISYGEMLNMILEAAA 627


>gi|261839442|gb|ACX99207.1| D-alanyl-alanine synthetase A [Helicobacter pylori 52]
          Length = 347

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDSAF--EYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|157363761|ref|YP_001470528.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
 gi|157314365|gb|ABV33464.1| D-alanine--D-alanine ligase [Thermotoga lettingae TMO]
          Length = 305

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 74/287 (25%), Positives = 128/287 (44%), Gaps = 18/287 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           ++    L    F+   +  +      +     D  FN+          V AILELL+IP 
Sbjct: 21  QSVFETLSKH-FEAELVAFEDQFVDKVTQ--FDAVFNLS--TAAMQTHVPAILELLKIPS 75

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           T SGI+  AL +DK  +K +++  GVP    I +         +   P +IKP + GS+ 
Sbjct: 76  TGSGIIGHALCIDKTITKIILNHYGVPTPKFISLEPGQETIPPVDFYPVIIKPSREGSAR 135

Query: 140 GII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV------MGDASLDVT 190
           G+    V+K+D ++   +    S  H    LIEQ+VDG E + G+              T
Sbjct: 136 GLSADSVVKEDFALKKAVKVIHSEFH-QPALIEQFVDGREFSVGIVAGEILPILEIDFST 194

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
                +  +      Y    + ++ PA+I  ++   + + A  A +A+  R  +R D   
Sbjct: 195 LPDGLERFYSYRVKHYYGEQTRYICPAQIDTELKDRISKYALTAFKALRLRNYARMDLRV 254

Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
                ++++LE+N  P +TP  S   +MA  AGY++ +L++ +  DA
Sbjct: 255 --KDGQIYFLEVNSLPMLTPGYSDIVKMAEAAGYTYEDLIMKIFMDA 299


>gi|315636188|ref|ZP_07891442.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
 gi|315479549|gb|EFU70228.1| D-alanine-D-alanine ligase [Arcobacter butzleri JV22]
          Length = 347

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 113/315 (35%), Gaps = 47/315 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A++ GGIS E E+S+ S  A    L+        +D  R                    
Sbjct: 3   VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             V     ++  D+  N+ HG  GEDG++ ++L+   IP+    
Sbjct: 63  KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A  +S +K  +K    S  V         +         S P ++KP+K GSS+G+ +
Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKDDKIEVD--SFPVILKPVKLGSSIGVAI 180

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +K  + +   L  +      D ++IE ++ G++         + +     + +     + 
Sbjct: 181 VKSQEELQYALDVAF--EFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238

Query: 204 L----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                      ++      +   +  E++      +  +    I R DF    ++ +++ 
Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 297 NEINSIPGSMANYLF 311


>gi|225439600|ref|XP_002265851.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|297735584|emb|CBI18078.3| unnamed protein product [Vitis vinifera]
          Length = 952

 Score = 96.1 bits (237), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 78/380 (20%), Positives = 133/380 (35%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + V+ GG S+ER +SL+S ++    ++     VS   +D                     
Sbjct: 79  VGVICGGPSAERGISLNSARSVIDHIQGDDLLVSCYYIDCNLNAYAISPAQVYSNTPTDF 138

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +    
Sbjct: 139 DFKLESLAQGFRSLSDFAEHLAASVDIVFPVIHGRFGEDGGIQELLEKSNIPFVGTRSNE 198

Query: 87  SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK  S   +   G                S L   F  +     S   V+KP + 
Sbjct: 199 CRQAFDKYDSSLELDRQGFVTLPNFLVQGSHSNESELSKWFAENHLDTNSGKVVVKPTRA 258

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------IELTCGVMG 183
           GSS+G+ V            +  +    D++L+E +++G                C  + 
Sbjct: 259 GSSIGVTVAYGVADSLKKANEIIAEGIDDRVLVEIFLEGGSEFTAIVLDVGSGFDCHPVV 318

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQ 236
               +V       +D    +  ++            +  P + P+D+   ++  A L  Q
Sbjct: 319 LLPTEVEIQLHDNADMREKDAIFNYRRKYLPTQQVAYHTPPRFPMDVIGSIREGASLLFQ 378

Query: 237 AIGCRGISRSDFLFDP----------------LSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G    +R D  F P                 S  V + +IN+  GM   S   + A+ 
Sbjct: 379 RLGLHDFARIDGWFLPSSILIPSASEKKLGRTKSGTVIFTDINLISGMEQTSFLFQQASK 438

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  +++ A CLR
Sbjct: 439 VGFSHSNILRSIIQRA-CLR 457



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 876 CKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 929



 Score = 42.9 bits (99), Expect = 0.060,   Method: Composition-based stats.
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36
           V+ GG +SER+VSL SG      L+     +V   
Sbjct: 495 VIFGGDTSERQVSLMSGTNVWLNLQAFNDLEVIPC 529


>gi|317182047|dbj|BAJ59831.1| D-alanyl-alanine synthetase A [Helicobacter pylori F57]
          Length = 347

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|317034958|ref|XP_001400807.2| D-alanine--D-alanine ligase [Aspergillus niger CBS 513.88]
          Length = 351

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 76/314 (24%), Positives = 120/314 (38%), Gaps = 37/314 (11%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFG--EDGLVQAILE 73
            +  A+AL++ G +V  +    S+   LAH +    DLAFN   G  G   +G V A+LE
Sbjct: 37  AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------- 124
             +IP+T S      L +DK R+K V+    VP  P  +++      +  +         
Sbjct: 97  AYQIPFTFSDAATMTLCLDKGRTKMVLEHFNVPTAPFAVIHFDHTAEKTQVSLDEILSMI 156

Query: 125 -----------SPPYVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGD-QLLIE 169
                        P  +KPL  GSS        IK  +S+   +      +     +L+E
Sbjct: 157 RMSRHSETLLSQYPLFVKPLAEGSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVE 216

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-HVLPAKIPLDIYKEVQ 228
           +Y+ G E T G++G       E A        Y             +             
Sbjct: 217 KYLPGREFTVGILGT-----GEDAWVVGVDEIYGASADDWAGEADEIKIGWDDQEADLAC 271

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV-FWLEINVQPGMTPV-SIFPEMAAYAGYSFR 286
           + A  A   + CR   R D   D     V   +EIN   G+ P  S  P +A +   S+ 
Sbjct: 272 QTALRAWTVLRCRDGGRIDIRMDHSGSPVAHVMEINPLAGLLPHWSQLPMIAEHNNVSYN 331

Query: 287 ELLLWMVEDASCLR 300
           EL+ ++++ A   R
Sbjct: 332 ELIEYILKSALQRR 345


>gi|308063477|gb|ADO05364.1| D-alanyl-alanine synthetase A [Helicobacter pylori Sat464]
          Length = 347

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 120/314 (38%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+         D       I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  K-PDLAF----------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K P L F                      N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLIFTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L    ++ +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYAL--DGAFEYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|78358082|ref|YP_389531.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78220487|gb|ABB39836.1| D-alanine--D-alanine ligase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 349

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 65/306 (21%), Positives = 125/306 (40%), Gaps = 19/306 (6%)

Query: 7   GIS----SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGN 61
           G S    +E + S ++ +   +AL+  G++  +I    ++   L    + D+ FN+  G 
Sbjct: 17  GYSEEEAAEFD-SPATIEGIETALQALGYETQRIGALPALAAALLQGRRWDIVFNIAEGC 75

Query: 62  FGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
            G      V A+L+   +PY  S  +   + + K  +K +V   G+P    ++++     
Sbjct: 76  HGFGRESQVPALLDYYSVPYVFSDPMTLGICLHKGMTKHIVRDNGIPTADFVVISDPAEA 135

Query: 120 SQHLISPPYVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
           +   +  P  +KP+  G          ++  Q +           H   +L+E ++ G E
Sbjct: 136 AAVSLPYPLFVKPVAEGTGIGVGAASKVQNPQEL-AAACARLIDRHRQPVLVETFLCGRE 194

Query: 177 LTCGVMGDASLDVT-----EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           LT G+ G  +   T      +  P ++   Y     +     V          ++ + +A
Sbjct: 195 LTVGITGTGAGARTLGALEVVFAPAAESDVYGYVNKAEYLERVQYHLADDADAQKARHVA 254

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLL 290
             A +A+GCR   R D  FD       ++E+N   G+ P  S  P M   AG  + +L+ 
Sbjct: 255 LAAWRALGCRDGGRVDLRFDAR-GVPNFIEVNPLAGLNPVNSDLPIMCYKAGLRYEQLIG 313

Query: 291 WMVEDA 296
            ++E A
Sbjct: 314 QIMESA 319


>gi|308062059|gb|ADO03947.1| D-alanyl-alanine synthetase A [Helicobacter pylori Cuz20]
          Length = 347

 Score = 96.1 bits (237), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIVKPNNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|207092530|ref|ZP_03240317.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPKX_438_AG0C1]
          Length = 347

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 69/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVDRSVGLVLAHLKPD 52
            VL GG S E E+S+ S  A   AL+         D       I+         A +K  
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEETNMHSKYFAQIKEK 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHNGLLKNSFLSTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +LVN     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDHVLVNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS---LDVTEIAVPKSDFY 200
           +K+++ +   L  +    +  ++LIE ++ G++                      K +F 
Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDLCFSYVEEPNKQEFL 241

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|170702583|ref|ZP_02893457.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
 gi|170132517|gb|EDT00971.1| D-alanine--D-alanine ligase [Burkholderia ambifaria IOP40-10]
          Length = 357

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 56/333 (16%), Positives = 118/333 (35%), Gaps = 44/333 (13%)

Query: 1   MAVLMGGISSEREVSLSS---GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP------ 51
           ++++ GG S E   SL S    +    +  +         V++   + +   +P      
Sbjct: 7   VSIIFGGKSPEYSASLESFRHVREVVQSSPELDID-YIYYVNQDNKVAIVSHRPRDTLED 65

Query: 52  ---------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                                    N+LHGN+GEDG +Q    ++ IP +   +L ++L+
Sbjct: 66  YLRRTDVMPYWMALGQMGARQTFVLNLLHGNYGEDGCIQGAASMMSIPGSFGPVLPASLA 125

Query: 91  MDKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           M K    + V            + +    +       +        V+KP   G+SL   
Sbjct: 126 MSKYHMSRYVAKAHPSARMPRTLILSDGDIGIAHKRITDAFPEGDVVMKPNSLGASLFTQ 185

Query: 143 VIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
                +     +  +  +   +    L+++Y+ G E + G   +  +      V      
Sbjct: 186 RFTMRREAVDAVRSNLAAILEYDRHALVQEYIAGDEYSVGCFQEHDVVTALPVVRIETAD 245

Query: 201 SY--ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            +    +                ++ + ++RL+    + +G R + R DF+    +  + 
Sbjct: 246 GFFGHAQKHRHGKVRETVVFEDDEVTRAIKRLSVDIFRDVGFRNMCRFDFIVT-RNGDIV 304

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +LE N  PG+   SIFP+M A    +  +++  
Sbjct: 305 FLEANPIPGLMKNSIFPKMLAAIDLTLVDMVRQ 337


>gi|302035853|ref|YP_003796175.1| d-alanine-d-alanine ligase [Candidatus Nitrospira defluvii]
 gi|300603917|emb|CBK40249.1| D-alanine-D-alanine ligase [Candidatus Nitrospira defluvii]
          Length = 340

 Score = 95.7 bits (236), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 72/294 (24%), Positives = 121/294 (41%), Gaps = 23/294 (7%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75
             S L   G +V  + V   + ++   +   KP +AFN+L    G    D  V + LEL+
Sbjct: 36  VVSTLRKLGHEVQPLGVKSDLEVIRAAVEDWKPHIAFNLLEEFDGRAVYDQNVVSYLELM 95

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKPLK 134
            IPYT        L+ DK  +KQV+S   +P    ++V    M  +   +  P ++K + 
Sbjct: 96  RIPYTGCNPRGLMLARDKALAKQVMSYHRIPYPEFMVVPLHRMVRRPKYLPFPLIVKSIS 155

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS------ 186
             +SLGI       D     + +     N G   L+E+Y++G EL  GVMG+A       
Sbjct: 156 EEASLGISQASIVDDDEKLRERVAFIHDNVGTGALVERYIEGRELYVGVMGNAHLQVFPV 215

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-------IYKEVQRLAFLAHQAIG 239
            ++    +P+        +                +       +   VQ LA   ++A+G
Sbjct: 216 WELVMDKMPEEARRIATERVKWSRKYQDKYGICSCEARNLPDGVVDHVQHLAKRVYRALG 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G +R D   D     V+ LE N  P +     F + A  A  ++++LL  ++
Sbjct: 276 LSGYARIDMRMD-QDGNVYVLEANPNPQIASGEDFADSAEKADLAYKDLLQELL 328


>gi|268323538|emb|CBH37126.1| conserved hypothetical protein [uncultured archaeon]
          Length = 720

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 63/297 (21%), Positives = 113/297 (38%), Gaps = 17/297 (5%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------AFNVLHG--NFGEDG 66
            + K  A +LE  G  V   + +  +   L    P +         FN+ +G        
Sbjct: 29  KTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERMGMVFNMAYGIQGESRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            + A+LE+L IPY  SG    +L++DK+ +K ++    +       V     +    +  
Sbjct: 89  HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQSISTPNF-WVYSSGDEDMSDVQY 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVM 182
           P ++KP     S GI ++  +  +   +    +     Q L+EQ++ G E          
Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEDDLRAAVKFVVT-EFIQQALVEQFIRGREFCVGLLGNGD 206

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +A   +        D               + PAKI   +  E+ RL+  A +A+  R 
Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLAAEMVRLSKDAFRALELRD 266

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +R D   D     ++ LEIN    +     +   A  AGY +  L+  ++E A+  
Sbjct: 267 FARVDIRMDEAEN-IYLLEINSMASLGLTGSYVYAANVAGYDYARLVNKILEVAAVR 322


>gi|315586593|gb|ADU40974.1| D-alanine--D-alanine ligase [Helicobacter pylori 35A]
          Length = 356

 Score = 95.7 bits (236), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 13  CVLFGGASFEHEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 72

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 73  KLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 132

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 133 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 192

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 193 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 250

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALVRCDFFVIE--NEVYLN 308

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 309 EINPIPGSLANYLF 322


>gi|325111081|ref|YP_004272149.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
 gi|324971349|gb|ADY62127.1| D-alanine--D-alanine ligase [Planctomyces brasiliensis DSM 5305]
          Length = 329

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 70/291 (24%), Positives = 122/291 (41%), Gaps = 15/291 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHG--NFGEDGLVQAILELLEI 77
           A   AL   G +V +I   + +   LA     DL FN+  G      +  V +IL++ EI
Sbjct: 34  AIVDALVACGHEVDRIGRAKQLVHRLADGCSWDLVFNISEGLRGLSRESQVPSILDVYEI 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S  L  ++ + K  +KQVV+  G+    S+LV++ +   +  +  P   KP+  G+
Sbjct: 94  PYTFSDPLTLSVCLHKELTKQVVARAGILTPASLLVSQLSDLDRLHLQFPLFAKPVAEGT 153

Query: 138 SL--GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLD 188
                        +    +           +L+E ++ G E T G+           +L+
Sbjct: 154 GKGVTPASCVNSFNELHSVCLQLLTEFEQPVLVESFLPGREFTVGILGTGEAARVVGTLE 213

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSD 247
           +      +   YSY  K    +    +P     D   ++ + LA  A +A+GCR   R D
Sbjct: 214 IVLREAAEVGVYSYVNKERCEDLVDYVPVNGHDDAEVRQAEELALTAWRALGCRDGGRID 273

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDAS 297
              D    +  ++E N   G+ P  S  P +A   G ++ +L+  +V  A+
Sbjct: 274 VRSDSH-GRPNFIEANPLAGLHPHHSDLPMIATAVGMTYVDLIDQIVTSAA 323


>gi|163783735|ref|ZP_02178721.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880981|gb|EDP74499.1| hypothetical protein HG1285_01523 [Hydrogenivirga sp. 128-5-R1-1]
          Length = 328

 Score = 95.3 bits (235), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 121/292 (41%), Gaps = 17/292 (5%)

Query: 22  CASALEDAGFKVSQIDVD----RSVGLVLAHLKPD--LAFNVLHGNF--GEDGLVQAILE 73
            A  +   G +V   D +      +   +   K D  + FN+ +G         V A+LE
Sbjct: 34  IAKVVSSRGHRVEVFDANLELCEKLLNFVEECKVDNVIVFNLSYGTQGESRYSHVPAMLE 93

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L I YT SG    A+++DK+ +K V    G+P    ++++ +    +  +S P V+KP 
Sbjct: 94  MLGIMYTGSGPFGHAIALDKVSTKLVFKEYGIPTPEFVVISPYQKIPEG-LSFPLVVKPR 152

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
               SLG+ +++  + +   L        G + L+E+++ G E    ++G+         
Sbjct: 153 MEAQSLGVNLVRNYRELEDTLTHVWE-EFGQEALVEEFIRGPEYEVSLIGNGKYIKALPI 211

Query: 194 VPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                    E  YS       +     PA I  ++ + +  L+  A  A+  R  +R D 
Sbjct: 212 TGIYLGDDPEAIYSREAKLKYHPEQFCPAAIKGELARRLVELSIKAFNALHLRDYARFDL 271

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                  K ++ E+N    + P   F   A  AG S+ +L+  ++  +S  R
Sbjct: 272 RL-GEDGKPYFFEVNSMASLNPSGSFFCAAKAAGLSYDQLIFKIL-HSSLRR 321


>gi|157736996|ref|YP_001489679.1| D-alanyl-alanine synthetase A [Arcobacter butzleri RM4018]
 gi|157698850|gb|ABV67010.1| D-alanine--D-alanine ligase [Arcobacter butzleri RM4018]
          Length = 347

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 113/315 (35%), Gaps = 47/315 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS------------------- 41
           +A++ GGIS E E+S+ S  A    L+        +D  R                    
Sbjct: 3   VAIVFGGISFEHEISIVSSIALKDVLKKDEIIYLFLDSSRQMYHIPTNIIKSKLFSSGEY 62

Query: 42  ------------------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                             V     ++  D+  N+ HG  GEDG++ ++L+   IP+    
Sbjct: 63  KKFDKVYFQKGGFYKKGGVFSKDKNIDFDVVLNLSHGGDGEDGILSSVLDFYSIPFIAPR 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             A  +S +K  +K    S  V         +         S P ++KP+K GSS+G+ +
Sbjct: 123 TEACVVSSNKFLTKGYAKSVNVNTLDYKYFTKDDKIEVD--SFPIILKPVKLGSSIGVAI 180

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +K  + +   L  +      D ++IE ++ G++         + +     + +     + 
Sbjct: 181 VKSQEELQYALDVAF--EFDDAIIIEPFISGVKEYNLAGTKVNGEFKFSIIEEPQKAEFL 238

Query: 204 L----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                      ++      +   +  E++      +  +    I R DF    ++ +++ 
Sbjct: 239 DFDKKYLDFSRTSKAKEVDLGEKLNNEIKESFKRLYNTLFEGSIIRCDFFV--INDEIYL 296

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 297 NEINSIPGSMANYLF 311


>gi|302803947|ref|XP_002983726.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
 gi|300148563|gb|EFJ15222.1| hypothetical protein SELMODRAFT_180525 [Selaginella moellendorffii]
          Length = 857

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A++ GG S+ER +SL+S ++    L+    +V    +D+ +                  
Sbjct: 24  VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83

Query: 43  --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                            L  LK   D+ F V+HG FGEDG +Q +LE   IP+  +G  A
Sbjct: 84  DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           +  + DK  + + +S  G    PS L++   +D   L+               V+KP K 
Sbjct: 144 ARCAFDKYEAAKELSRHGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178
           GSS+G+ V      +  D          D++++E ++ G                   + 
Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L     ++ +  F        +   ++  P + P+   + ++  A      +
Sbjct: 264 LLPTEVELLHGDGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323

Query: 239 GCRGISRSDFLFDP------LSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             R  +R D    P       S      + ++N+  GM   S   + AA  G S R++L 
Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383

Query: 291 WMVEDASCL 299
            ++  A   
Sbjct: 384 LVLNRARTR 392



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              P     +  +  +    L    +   G +R D   +  + +V  +E+N  PGMTP
Sbjct: 769 PPPPLICSEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTP 826



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36
           VL GG SSER+VSL SG      L       VS  
Sbjct: 420 VLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454


>gi|297621521|ref|YP_003709658.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
 gi|297376822|gb|ADI38652.1| putative D-alanine--D-alanine ligase [Waddlia chondrophila WSU
           86-1044]
          Length = 380

 Score = 95.3 bits (235), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 85/361 (23%), Positives = 136/361 (37%), Gaps = 74/361 (20%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AVL GG S E E+S+ +G     AL    +K+  +    +                    
Sbjct: 5   AVLFGGRSIEHEISVITGLQAILALNPKKYKILPVYFALNGKWYTGDPLLERSFYRKLPA 64

Query: 46  -----------------------LAHLKP-DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                                  L    P D      HG +GEDG VQ +LEL  +PYT 
Sbjct: 65  AYSDLTEITLLPDPSIGGFKDLALNRTYPVDRCLLCFHGQYGEDGCVQGLLELAGLPYTG 124

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---------TMDSQHLISPPYVIKP 132
           S +L+SAL+M K  +K ++ +  +P  P ++V++                 +  P  IKP
Sbjct: 125 SRVLSSALTMSKSHTKLLLQALNIPCLPHVVVDKQEAVSDLAAVRKKILDTLRYPLFIKP 184

Query: 133 LKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDV 189
              GSS+GI       S+   L +     +    +IE Y+D    I ++           
Sbjct: 185 NHLGSSIGIAKATDKNSLDRALAKVF--LYDSAAIIEPYLDNLLEINVSVLEGDPPRSSA 242

Query: 190 TEIAVPKSDFYSYELKY--------------SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            EI +   +  SYE KY               +  +  + P  + L I + V   A  A 
Sbjct: 243 VEIPIASQEALSYEDKYLKGGAKSTGGSSQGMAGLTRMIDPQDLDLKIKQGVINHALKAF 302

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA--GYSFRELLLWMV 293
           + + C G+ R DF+ D  +  +++ E N  PG    S+   +         + ELL  ++
Sbjct: 303 KELSCSGVCRFDFMLDTSTETLYFNEANPIPG----SLSFYLWDRTEPKLLYSELLDVLI 358

Query: 294 E 294
           E
Sbjct: 359 E 359


>gi|126178605|ref|YP_001046570.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
 gi|125861399|gb|ABN56588.1| D-alanine--D-alanine ligase [Methanoculleus marisnigri JR1]
          Length = 663

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/300 (22%), Positives = 121/300 (40%), Gaps = 25/300 (8%)

Query: 21  ACASALEDA-GFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILE 73
              +AL +  G++ + +    ++   L  LK   D  FN+    F  D      V A+ E
Sbjct: 336 QMKAALRELSGYRFTYLFKHETLIQDLQRLKGKVDYVFNLCDEGFNNDPRKELHVPALFE 395

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +  IPYT +G  A A   DK   + +    G+PV  +  +          +  P ++KP 
Sbjct: 396 IYSIPYTGAGPQALAFCYDKSLVRGIAKEMGIPVPDACFITPGDRTYDVGMKFPAIVKPN 455

Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G SS       +    + +   +    +   +   LL+E+++ G +++ G++G+ S   
Sbjct: 456 AGDSSYGITQESIAHSIEELSDIITSLRTTLGYDRSLLVEEFLTGKDISVGIIGNPSGYS 515

Query: 190 TEIAVPKSDF----------YSYELKY---SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
             + V + D+            YE K+   S        PA +P +  K + R      +
Sbjct: 516 MVLPVIEEDYSALPPGLPRICGYEAKWLPDSPYWKITSKPADLPEETEKAIVRCCLALFE 575

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + CR   R D+  D        LE+N  PG         MA YAG ++ E+L  +++ A
Sbjct: 576 RLECRDYCRFDWRLDEHGN-PKLLEVNPNPGWCWDGHLARMAKYAGLTYPEMLGRILKAA 634


>gi|294101201|ref|YP_003553059.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616181|gb|ADE56335.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 367

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 126/298 (42%), Gaps = 18/298 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAIL 72
           L + +A ++ +   GF+V   + +  +   L  + PD   N+  G     G +  V  IL
Sbjct: 50  LETVEALSNEIASLGFQVFLFEQNELLLQKLDSIAPDFVLNIAEGLGNYRGRESQVPCIL 109

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PY 128
           E L IP++ S   + A+++DK+ +  V+ +  +P   + +       ++  +       Y
Sbjct: 110 ESLNIPFSGSDSASLAIALDKVLTSHVLRASNIPAPKNYVAKLPQDTTEKKVIFNTCQKY 169

Query: 129 VIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGD 184
           +IKP   GSS GI +             ++     +    ++E+++ GIE+T        
Sbjct: 170 IIKPRWEGSSKGIFLDSIADTPEKVKTCIKRIWERYNQPAIVEEFLPGIEITAGVAGNTQ 229

Query: 185 ASLDVTEIAVPKSDFYSYEL-----KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                     P ++  S+       +       +  P  +   + K++  LA  A +A+ 
Sbjct: 230 PKCIGMMSITPVTENSSFLYSLEEKRNYLERIRYSGPDSMSPQLRKKIGDLAVRAFKALE 289

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
            R I+R DF  D    +   ++IN  PG++P  S  P +   +G  + EL+  ++ +A
Sbjct: 290 LRDIARIDFRLDDK-GQPRVIDINPLPGLSPAYSDLPILYRLSGGEYSELIQTILREA 346


>gi|150019989|ref|YP_001305343.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
 gi|149792510|gb|ABR29958.1| D-alanine--D-alanine ligase [Thermosipho melanesiensis BI429]
          Length = 310

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 121/289 (41%), Gaps = 21/289 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
            A   A+    +K   +  D      +   K D  FN+ +  G   +   V ++L+ L I
Sbjct: 20  NAIKDAI-SKKYKCEIVRFDEDFLRKIN--KYDFVFNLSNKGGKEVKQVHVPSVLDFLGI 76

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S     A+ +DK+ +K ++    +P     +V+   + +        ++KP + GS
Sbjct: 77  PYTSSNTFTHAICLDKITTKIIMKQYNIPTPDFYVVDVGEIPNYIDGKY--IVKPPREGS 134

Query: 138 SLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------- 187
           + GI       +       ++          L+E+++DG E + GV+G+           
Sbjct: 135 AKGITKDSIVDNLEDLKKQVKKIHDEFSQPALVEKFIDGREFSVGVIGNKKPEVLPILEI 194

Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
              +     +  +      Y    + ++ PA + +D+ K+++  A    + +  R  +R 
Sbjct: 195 DFSSLPKELERFYSYRVKHYYGEQTRYICPANLDVDLEKKIKYYAQKLFRVLNLRDYARM 254

Query: 247 DFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
           D        ++++LE+N  P + P  S   +MA  AG  + +L+L ++E
Sbjct: 255 DLRI--KGGEIYFLEVNSMPQLVPVYSDITKMAKAAGCDYDKLVLKILE 301


>gi|332703219|ref|ZP_08423307.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
 gi|332553368|gb|EGJ50412.1| D-alanine--D-alanine ligase [Desulfovibrio africanus str. Walvis
           Bay]
          Length = 339

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 67/288 (23%), Positives = 116/288 (40%), Gaps = 12/288 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLE 76
                AL   GF   +I    ++   L    + DL FN+  G   FG +  +  +L+   
Sbjct: 33  AGIEGALRALGFDTERIGSLPALMSALGQGRRWDLVFNIAEGLNGFGRESQIPCVLDWHG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT S  +  AL + K  +K VV + G+P     +V      ++  +  P  +KP+  G
Sbjct: 93  IPYTFSEPMTLALGLHKGMTKHVVRAAGIPTPDFAVVAEPAEAAKVDLPFPLFVKPVAEG 152

Query: 137 SSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--- 191
           + LGI    +       +D            +L+E ++ G ELT GV+G  +   +    
Sbjct: 153 TGLGIGSASRVTDKAGLMDACARLIERFRQPVLVETFLPGRELTVGVVGTGAKARSVGAL 212

Query: 192 --IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             I   ++D  +Y           +          +  +++A  A +A+GCR   R D  
Sbjct: 213 EVIFGDQADPSAYGYINKQDWERRMHYRIADDAEARTAEQVALDAWRALGCRDGGRVDLR 272

Query: 250 FDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            D       ++E+N   G+ P  S  P +       ++EL+  +V  A
Sbjct: 273 LDGA-GVPNFIEVNPLAGLNPTYSDLPILCRLNNMPYQELIAAIVHSA 319


>gi|188527419|ref|YP_001910106.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
 gi|229485957|sp|B2UT94|DDL_HELPS RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|188143659|gb|ACD48076.1| D-alanyl-alanine synthetase A [Helicobacter pylori Shi470]
          Length = 347

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 118/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+         D       I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +   GI A
Sbjct: 64  KLPPLILTCNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPGIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDHVLLNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEILIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|308272543|emb|CBX29147.1| hypothetical protein N47_J01280 [uncultured Desulfobacterium sp.]
          Length = 326

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/300 (22%), Positives = 118/300 (39%), Gaps = 26/300 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILE 73
           +A + AL   GF    +  D ++  V   L  L P   FN++    G      L  + L+
Sbjct: 28  EAVSKALRPLGFNPVPVKFDLNLEAVGIRLQKLNPAFVFNLVESVNGCGSLIHLAPSFLD 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VIK 131
            L I YT S   A  L+ +K+  K  +++ G+    +  ++     +          V +
Sbjct: 88  YLRIAYTGSKTQAMFLTSNKLLGKDYLAANGINTSKAYCLSSLKSKTPVNGRYIIKSVWE 147

Query: 132 PLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---------CGV 181
               G S   ++ +K    +   L +  S   GD    E+Y+DG E             V
Sbjct: 148 HASIGMSQDSVVYVKSAPELIAKLERFRSSMIGD-FFCEEYIDGREFNIALLSGPEGVEV 206

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTH------VLPAKIPLDIYKEVQRLAFLAH 235
           +  A +  T+    K     Y  K+ + +  +              D+ + ++ ++    
Sbjct: 207 LPPAEILFTDYPPDKLKIVDYSAKWKTDSFEYLNTNRTFNFTSDDRDLIESLKIISRKCW 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              G RG +R DF  D  S +++ LEIN  P ++P S F   +   G  F E++  ++ED
Sbjct: 267 DLFGLRGYARVDFRIDE-SGRLWVLEINANPCISPDSGFVAASKMIGLGFPEIIKRIIED 325


>gi|332798138|ref|YP_004459637.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
 gi|332695873|gb|AEE90330.1| D-alanine--D-alanine ligase [Tepidanaerobacter sp. Re1]
          Length = 336

 Score = 94.9 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 66/298 (22%), Positives = 114/298 (38%), Gaps = 24/298 (8%)

Query: 24  SALED---AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEIP 78
             L++     F+ S +  D  +   L +    L FN+ +G  GE     + AILE   IP
Sbjct: 32  KNLKEVLSKRFECSLVKADSDIISKLQNENVSLVFNLCNGIRGETRQAQIPAILEFSGIP 91

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKG 135
           YT S IL   L+++K  + +V    GV     I +             I  P ++KP   
Sbjct: 92  YTGSSILGHTLAINKNYACKVFKGSGVTTPEFISIYDKDDLMQLRNKEIKFPVLVKPCDE 151

Query: 136 GSSLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GS  GI               +Q     +   +++ +Y+ G E T G++G+ +       
Sbjct: 152 GSGRGIHQDSLVYDFRSLKRKVQQELRLYNPPIMVTEYIKGREFTVGILGNGNNLKVLPI 211

Query: 194 VPKSDFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +  S     +      +               PA +   +  +++  A  A+ A+  R  
Sbjct: 212 LEISFEALPDDLAKFYSFEVKANYADKTIFRCPAPLDNKLKTKIENTAKKAYNALSLRDY 271

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R D          + LE+N  PG+    S   +MA+     +  L+L +VE+A   R
Sbjct: 272 ARVDVRV--KDDTPYVLEVNSLPGLQKGYSDITKMASACNLGYEGLILKIVENA-INR 326


>gi|302814744|ref|XP_002989055.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
 gi|300143156|gb|EFJ09849.1| hypothetical protein SELMODRAFT_184333 [Selaginella moellendorffii]
          Length = 857

 Score = 94.6 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 136/369 (36%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV------------------ 42
           +A++ GG S+ER +SL+S ++    L+    +V    +D+ +                  
Sbjct: 24  VALICGGPSAERGISLNSARSVLDHLQAEDVEVDCYYMDQQLRAYAISPSQMYCNTPSDF 83

Query: 43  --------------GLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                            L  LK   D+ F V+HG FGEDG +Q +LE   IP+  +G  A
Sbjct: 84  DFKLHSLAQCFTSQADFLRRLKSSVDIVFPVIHGKFGEDGGLQELLESAGIPFVGTGSSA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-----------PYVIKPLKG 135
           +  + DK  + + +S  G    PS L++   +D   L+               V+KP K 
Sbjct: 144 ARCAFDKYEAAKELSRFGFVTIPSFLIDSPEIDKAALVEWFKANDLNPSSDRVVVKPAKS 203

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178
           GSS+G+ V      +  D          D++++E ++ G                   + 
Sbjct: 204 GSSIGVTVAHGLDEVIRDAETLLKEGIDDRIVVEVFLQGCTEFTVIILDTGSGEQVQPVA 263

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L     ++ +  F        +   ++  P + P+   + ++  A      +
Sbjct: 264 LLPTEVELLHADGQSIGEKIFNYRRKYLPTRQVSYHTPPRFPVQTIQSIRSGASKLFTLL 323

Query: 239 GCRGISRSDFLFDP------LSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             R  +R D    P       S      + ++N+  GM   S   + AA  G S R++L 
Sbjct: 324 NLRDFARVDGWLLPPSSSFNKSNDFLVVFSDVNLVSGMEQTSFLFQQAAQVGLSHRDVLR 383

Query: 291 WMVEDASCL 299
            ++  A   
Sbjct: 384 LVLNRARTR 392



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 23/58 (39%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
              P     +  +  +    L    +   G +R D   +  + +V  +E+N  PGMTP
Sbjct: 769 PPPPLICSEEAVRSCRERIELVANTLQLEGFARIDAFMNVDTGEVIVIEVNTVPGMTP 826



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAG-FKVSQI 36
           VL GG SSER+VSL SG      L       VS  
Sbjct: 420 VLFGGGSSERQVSLMSGTNVWLNLRGCKDLDVSPF 454


>gi|268323675|emb|CBH37263.1| conserved hypothetical protein, containing D-alanine--D-alanine
           ligase C-terminus domain [uncultured archaeon]
          Length = 720

 Score = 94.6 bits (233), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 116/297 (39%), Gaps = 17/297 (5%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--------FNVLHG--NFGEDG 66
           ++ K  A +LE  G  V   + +  +   L    P +         FN+ +G        
Sbjct: 29  NTVKLVAESLEKEGHNVRIAEGNMYIIEKLQEFMPRVIEGERLGMAFNMAYGIQGESRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            + A+LE+L IPY  SG    +L++DK+ +K ++   G+P     + +    D    +  
Sbjct: 89  HLPAMLEMLGIPYVGSGPEGHSLALDKVITKILMQKQGIPTPNFWVYSTGDEDMS-DVQY 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----GVM 182
           P ++KP     S GI ++  ++ +   +          Q L+EQ++ G E          
Sbjct: 148 PVIVKPKMEAVSYGIKIVDNEEDLRAAVKLVVIEFK-QQALVEQFIRGREFCVGLLGNGD 206

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +A   +        D               + PAKI   +   + RL+  A  A+G R 
Sbjct: 207 PEAFPVLEIDLENDPDAIQTVDDKKQKPRGKICPAKISQKLADVMVRLSKDAFHALGLRD 266

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +R D   D     ++ LEIN    +     +   A  AGY +  L+  ++E A+  
Sbjct: 267 FARVDIRMDEAKN-IYLLEINSMASLGLTGSYVHAANVAGYDYARLVNKILEVAAVR 322


>gi|152990841|ref|YP_001356563.1| D-alanyl-alanine synthetase A [Nitratiruptor sp. SB155-2]
 gi|189083044|sp|A6Q3Z7|DDL_NITSB RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|151422702|dbj|BAF70206.1| D-alanine-D-alanine ligase [Nitratiruptor sp. SB155-2]
          Length = 342

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 109/311 (35%), Gaps = 45/311 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           AV+ GG S E E+S+ S  A    +   G     +D +R   L+                
Sbjct: 4   AVVFGGKSYEHEISIVSTIAIKDIIP--GAIFIFLDGNRDFYLIEKADLKSNYFSSGNYK 61

Query: 46  -----------------LAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                            L   K   D+  N++HG  GEDG + ++LE  EI Y    I  
Sbjct: 62  KSPKLELKKGGFYQKSLLKEKKIPADVVINLVHGADGEDGKLASLLEFFEIDYIGPRIEG 121

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S +S  K+ +K     CG+ V P   + R           P +IKP   GSS+G+ V+  
Sbjct: 122 SVISYSKLLTKLYAKECGIEVLPY-QLLRKQDKKIIDFEYPVIIKPNHLGSSIGVSVVYD 180

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   L  +      D++LIE +++GIE                          + + 
Sbjct: 181 SSELEYALDVAF--EFDDEVLIEPFIEGIEEYNLAGAKGQTFHFSKIEAVKKEKLLDFEK 238

Query: 207 SSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             L+       K       +   ++      +  +    I R DF       K++  EIN
Sbjct: 239 KYLDFGRSGEVKDASLNETLRLHIRNAFEKIYDPLFSGAIIRIDFFV--RDGKLYLNEIN 296

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 297 PVPGSLANYLF 307


>gi|168012025|ref|XP_001758703.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|76880176|dbj|BAE45860.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
 gi|162690313|gb|EDQ76681.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 966

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 75/369 (20%), Positives = 139/369 (37%), Gaps = 70/369 (18%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A++ GG S ER +SL+S ++    LE     VS   ++                     
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 40  -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                      +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           + ++ DK  +   ++  G             V  + L   F  ++ +  S   V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL-------- 187
           GSS+G+ V +   +         +    D+++IE + +G      ++ D           
Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEGALEFTALVLDVGFGNETRPVA 352

Query: 188 ------------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                         ++     + F        +   ++  P +   +   +++  A    
Sbjct: 353 LFPTEVELSGLDYESDGENETAIFNYRRKYLPTRQVSYHTPPRFSEETINKIRNRAADLF 412

Query: 236 QAIGCRGISRSDFLFDPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + +  R I+R D    P        + + +IN+  GM   SI    A+  G +  ++L  
Sbjct: 413 RILNLRDIARVDGWLLPQVGGQSETIIFSDINLMSGMEQTSILFMQASLVGLAHVDILRT 472

Query: 292 MVEDASCLR 300
           ++  A C R
Sbjct: 473 LLRRA-CTR 480



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 14/68 (20%), Positives = 27/68 (39%)

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              P+    +     ++   +  + +G  G +R D      + +V  +E N  PGMTP +
Sbjct: 878 PPPPSLATEEAIAGCKKRIEIVARTLGLDGFARIDAFMHADTGEVIIIEANTVPGMTPST 937

Query: 273 IFPEMAAY 280
           +    A  
Sbjct: 938 VLIHQALA 945



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 16/35 (45%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36
           VL GG SSER+VSL SG      L       VS  
Sbjct: 514 VLFGGDSSERQVSLISGTNVWLNLRAWNDLDVSPF 548


>gi|313682067|ref|YP_004059805.1| d-alanine/d-alanine ligase [Sulfuricurvum kujiense DSM 16994]
 gi|313154927|gb|ADR33605.1| D-alanine/D-alanine ligase [Sulfuricurvum kujiense DSM 16994]
          Length = 345

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 61/311 (19%), Positives = 117/311 (37%), Gaps = 43/311 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAH---- 48
           A+L GG S E E+S+ S       L              K   ID  +   +  +     
Sbjct: 4   AILFGGASYEHEISIVSAITVKEKLSRYELSFIFCDQDHKFYLIDGTKMKAVTFSRGEHR 63

Query: 49  --------------------LKPDL-AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                                K D+   N++HG  GEDG + ++L+   IP+      AS
Sbjct: 64  KMPQIFLANGGFEQRGLFGSKKHDMPILNLIHGGDGEDGSIASLLDFFHIPFIGPRKEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS DK  +K + +S G+   P  ++++         + P++IKP + GSS+G+ +++++
Sbjct: 124 MLSFDKHYTKWLANSLGIKTLPYEILHKE-DKRAVKTAYPFIIKPARLGSSIGVSIVREE 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           + +   L    ++     +LIE ++ G++        A  ++    V +     +     
Sbjct: 183 RELDYAL--DVAFEFDSVVLIEPFIAGVKEYNLAGFSARGEMNYSIVEEPQKAEFLDFEK 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQ----AIGCRGISRSDFLFDPLSRKVFWLEIN 263
                          +   + +    A +     +    + R DF    +  +V+  EIN
Sbjct: 241 KYLDFSRSGNVAEASVSDTLVQQLRDAFKTIYLPLFEGALIRCDFF--EIEGEVYLNEIN 298

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 299 PIPGSMANYLF 309


>gi|27383340|ref|NP_774869.1| hypothetical protein bll8229 [Bradyrhizobium japonicum USDA 110]
 gi|27356515|dbj|BAC53494.1| bll8229 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 65/297 (21%), Positives = 128/297 (43%), Gaps = 20/297 (6%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPD-------LAFNVLHG--NFGEDG 66
            + ++  +AL++        + D+ +   L     PD       + FN+ +G        
Sbjct: 29  KTVESVVAALQEGNHDTLLCEGDKGLLATLERFMPPDSQARPSGIVFNMAYGIQGECRYT 88

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
            V A+LE+  +PYT S  L  AL++DK  +KQ++  CGVP     ++ R T  +   +  
Sbjct: 89  HVPAMLEMAGVPYTGSSPLGHALALDKAITKQLIRDCGVPTPNFRVMRRGTEST-GDLCF 147

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P V+KP    +S G+ ++ +   +   +    +  +    L+E+Y++G E+   ++G+  
Sbjct: 148 PLVVKPRHESTSFGLQLVYEPAQLRQAVEVIVT-QYAQDALVEEYIEGREICVALLGNGE 206

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIG 239
           L+   +           L                + PA++  ++   ++ ++    +A  
Sbjct: 207 LEALPLVEQDFGERETRLITWEDKMHMAVVEPQKICPAQVGSNLATILRDISVATFRACR 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           CR  +R D   D  S   F LEIN    +   + +   A  AGY+F  L+  +++ A
Sbjct: 267 CRDYARVDIRID-RSGHPFVLEINSMAALGIGASYVLAAKAAGYTFSSLVNGILDVA 322


>gi|315105143|gb|EFT77119.1| D-ala D-ala ligase [Propionibacterium acnes HL050PA2]
          Length = 197

 Score = 94.6 bits (233), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 52/194 (26%), Positives = 95/194 (48%), Gaps = 12/194 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANNGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L++IPY  S      +S DK  + + V++ GV     + +       
Sbjct: 65  GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                         S P ++KP  GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQMVMRSIAEKFSLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGD 184
           ++ G         D
Sbjct: 183 FIVGNGTRNRHDHD 196


>gi|297620263|ref|YP_003708400.1| hypothetical protein wcw_0017 [Waddlia chondrophila WSU 86-1044]
 gi|297375564|gb|ADI37394.1| conserved hypothetical protein [Waddlia chondrophila WSU 86-1044]
          Length = 642

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 110/299 (36%), Gaps = 22/299 (7%)

Query: 20  KACASALED-AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI----LEL 74
                AL+    F+ S  D  +++    +   P    N+    +  D  ++      +E+
Sbjct: 320 NQMKEALKKIENFQFSCFDDHKNLIRKFSQNPPPFVMNLCDEGWNNDPFMELHPTALMEM 379

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L+IPYT +G    ++  +K   + +  S  V V   I ++     +      P +IKP  
Sbjct: 380 LKIPYTGAGPECLSICYNKSTVRAIAQSMDVHVPSEIWIDPSNHSAAIPSIFPALIKPAY 439

Query: 135 GGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           G SS       V+   + +        +      +LI++++DG E + GV+G+       
Sbjct: 440 GDSSIGITQNAVVYSAEELVTYFDNLKAQMPNIPILIQEFLDGREFSVGVIGNGVSLEVL 499

Query: 192 IAVPKSD-------------FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +                    +  +           A +   + +++   +    Q +
Sbjct: 500 PILEVDYSGLPENLPKILGYESKWHPESPYCTHIRYHQAHLDESLARDLIDTSINLFQRL 559

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            CR  +R DF  D    +   LE N  PG         MA +AG  + ELL  +++ A+
Sbjct: 560 KCRDYARFDFRMDSQ-GEAKLLEANPNPGWCWDGKMALMAEFAGIQYHELLEKILKAAA 617


>gi|167749950|ref|ZP_02422077.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
 gi|167657117|gb|EDS01247.1| hypothetical protein EUBSIR_00918 [Eubacterium siraeum DSM 15702]
          Length = 354

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 74/346 (21%), Positives = 134/346 (38%), Gaps = 57/346 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------LAH---- 48
           +AVL GG S++   SL +  +  S+L     +   I + R+   +        +      
Sbjct: 6   IAVLFGGASADHAASLHTAYSVLSSLPKE-IEPLAIGITRAGRWLFYPGSYENIKDGSWE 64

Query: 49  ------------------------------LKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                                          + D  F VLHG +GEDG VQ + +L  +P
Sbjct: 65  QDSDCCSCVISPDMTNKGVIKIISDGESTIHRIDAVFPVLHGKYGEDGRVQGLCKLAGLP 124

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVI 130
              +   A+AL  D+     V+S   + V  ++ ++R  M+            +S P   
Sbjct: 125 VIGNDFAAAALCNDRRIMDLVLSDSNIKVIENVTLHRSEMNDMTAAIKKITGKLSFPIYT 184

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV---MGDASL 187
            P    +S+G    + ++ +   +  S S +    ++ E  V G ELTC V         
Sbjct: 185 APTSCSTSVGACRAENEKELEEAIKASFSHHPY--IIAESAVKGRELTCAVLGAKHHDER 242

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 V   D      +Y +  S   +PAK+      ++++ A  A+ A+ C+  +R D
Sbjct: 243 VAIGELVRTDDSIDKLSEYIASTSELKVPAKLDGLTQNKIKQTARAAYDALSCKCFARVD 302

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            + D    +V+   +   PG+   SIF  +   + YS+ E+L  ++
Sbjct: 303 MVLD-NDGEVYVRRVRGIPGLDRQSIFTRLVTESTYSYEEMLRMLI 347


>gi|282853024|ref|ZP_06262361.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|282582477|gb|EFB87857.1| D-ala D-ala ligase N-terminal domain protein [Propionibacterium
           acnes J139]
 gi|314922657|gb|EFS86488.1| D-ala D-ala ligase [Propionibacterium acnes HL001PA1]
 gi|314965740|gb|EFT09839.1| D-ala D-ala ligase [Propionibacterium acnes HL082PA2]
 gi|314982882|gb|EFT26974.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA3]
 gi|315091191|gb|EFT63167.1| D-ala D-ala ligase [Propionibacterium acnes HL110PA4]
 gi|315094422|gb|EFT66398.1| D-ala D-ala ligase [Propionibacterium acnes HL060PA1]
 gi|327328918|gb|EGE70678.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 197

 Score = 94.2 bits (232), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 51/194 (26%), Positives = 94/194 (48%), Gaps = 12/194 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L++IPY  S      +S DK  + + V++ GV     + +       
Sbjct: 65  GLGENGALLEVLQLMDIPYVGSSPATCRISFDKSIASRAVAAAGVVTPQQVALPHNVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P ++KP  GGSSLG+  +     +P  +  ++++ + D +++E+
Sbjct: 125 LGAQMVMRSIAEKFGLPVIVKPAHGGSSLGVTKVDGVDDLPQAV--ANAYAYDDMVVVEE 182

Query: 171 YVDGIELTCGVMGD 184
           ++ G         D
Sbjct: 183 FIVGNGTRNRHDHD 196


>gi|153952610|ref|YP_001398281.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. doylei
           269.97]
 gi|189083035|sp|A7H451|DDL_CAMJD RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|152940056|gb|ABS44797.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. doylei
           269.97]
          Length = 346

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 110/310 (35%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S  A    +     +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSAVALKKVINQN-LEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIQQGGFFSKGFLKENKLECECVINLIHGGDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +  P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKGQNSKE-KLRFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +       + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCVINDKFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|317148223|ref|XP_001822597.2| hypothetical protein AOR_1_704134 [Aspergillus oryzae RIB40]
          Length = 375

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 68/324 (20%), Positives = 118/324 (36%), Gaps = 49/324 (15%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNF--GEDGLVQAILELL 75
           A A++++  G +V  +   + +   +    H + DLAF++  G    G +  +  +LE  
Sbjct: 40  AIAASIQSNGHRVVCVGDIKELVQRMAREEHKEWDLAFSISEGMHGVGREAQIPGLLEAY 99

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT--------------MDSQ 121
            IP+  S     AL +DK ++K ++   G+P  P  +V                  M  Q
Sbjct: 100 HIPHVFSDAATLALCLDKGKTKMILEQFGIPTAPFAVVPASWTKADCTLTQLLEKTMHGQ 159

Query: 122 HLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            L S P  IKP   GSS GI     +     +   +    +   G  +LIE ++ G E T
Sbjct: 160 KLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRFPGASILIETFLSGQEYT 219

Query: 179 CGVMGDASLDVTEIAVPKSD----------------FYSYELKYSSLNSTHVLPAKIPLD 222
             ++G                                 +         +    P     +
Sbjct: 220 VSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDGSFWDVNNKNGPDADEPE 279

Query: 223 IYKEVQRL---------AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VS 272
            +   +           A  A +A+ C  + R D  +     + + LEIN  PG+ P  S
Sbjct: 280 RFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GADNRPYVLEINPLPGLRPDWS 338

Query: 273 IFPEMAAYAGYSFRELLLWMVEDA 296
           I    A + G S +EL+  +++ A
Sbjct: 339 ILARTAVHEGISHKELIGKVIDSA 362


>gi|217076423|ref|YP_002334139.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
 gi|217036276|gb|ACJ74798.1| D-alanine-D-alanine ligase family protein [Thermosipho africanus
           TCF52B]
          Length = 312

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 57/290 (19%), Positives = 126/290 (43%), Gaps = 21/290 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
           +A  +A+    +    +  D +    +     D  FN+ +  G       V A+L+LL I
Sbjct: 20  EAVKNAV-SKKYDCEVVQFDENFINKIK--GFDFVFNLSNKGGKETIQVHVPALLDLLNI 76

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT S   + +L +DK+ +K ++    +P     + +      + + +  +++KP + GS
Sbjct: 77  PYTSSNAYSHSLCLDKITTKIIMQHYNIPTPRFYVYDLGQTP-EKIDNGTFIVKPPREGS 135

Query: 138 SLGIIVIKKDQSIP--LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           + GI       ++     +++          L+E+++DG EL+ G++G+         + 
Sbjct: 136 ARGISKDSVVDNLKALQKMVKYIHEEFKQPALVEEFIDGKELSVGIIGNGDSLEVLPILE 195

Query: 196 K----------SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                        +           + ++ PA+I  ++ ++++  A    + +  R  +R
Sbjct: 196 IDFSTLPEGLERFYSYNVKHNYGEMTNYICPARISNNVKEKLEFYAKKLFRVLNLRDYAR 255

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
            D        ++++LE+N  P + P  S   +MA  AGY + +L+L ++E
Sbjct: 256 MDVRI--RDDEIYFLEVNSAPQLVPVYSDITKMAKAAGYEYDDLILKILE 303


>gi|317177433|dbj|BAJ55222.1| D-alanyl-alanine synthetase A [Helicobacter pylori F16]
          Length = 347

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 4   CVLFGGASFEYEISIVSAIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHNGLLKSSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYVLLNEKNCANALNLIGFNFPFIIKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSSALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|307720863|ref|YP_003892003.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
 gi|306978956|gb|ADN08991.1| D-alanine/D-alanine ligase [Sulfurimonas autotrophica DSM 16294]
          Length = 345

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 60/324 (18%), Positives = 113/324 (34%), Gaps = 47/324 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------------- 46
           +L GG S E E+S+ S       L +        D D +  LV                 
Sbjct: 5   ILFGGASFEHEISIVSAITLKEKLSNFDLTFIFCDSDHTFYLVEASKMKAVTFSKGEHKK 64

Query: 47  ------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                                   +  N++HG  GEDG + A+L+   I Y    + A  
Sbjct: 65  MPVLTLAQGAFVQKSMFSKSEYNSVVLNLIHGADGEDGTIAALLDFYSIKYIGPRVDACT 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            S DK  +K +  + GV      ++++    +      P +IKP   GSS+G+ ++K + 
Sbjct: 125 FSYDKRYTKYLCEAIGVKSVKYEVMHKNEHCNIQT-PYPIIIKPSSLGSSIGVSIVKDES 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   L  +      D +++E +++G++        A+  +    V +     +      
Sbjct: 184 ELDYALDVAF--EFDDTVIVEPFLEGVKEYNLAGYYANGAMHYSIVEEPHKEEFLDFEKK 241

Query: 209 LNSTHVLPA----KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                         +  ++   ++      ++ +    + R DF     + +V   EIN 
Sbjct: 242 YMDFSRSEQVLTADVSEELTLRLKTNFEKVYRGLFEGALIRCDFFV--FNDEVLLNEINP 299

Query: 265 QPGMTPVSIFPEMAAYAGYSFREL 288
            PG     +F + A     S  EL
Sbjct: 300 IPGSMANYLFEDFA----VSLEEL 319


>gi|157962243|ref|YP_001502277.1| D-alanyl-alanine synthetase A [Shewanella pealeana ATCC 700345]
 gi|189083053|sp|A8H5A5|DDL_SHEPA RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157847243|gb|ABV87742.1| D-alanine--D-alanine ligase [Shewanella pealeana ATCC 700345]
          Length = 334

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 64/308 (20%), Positives = 120/308 (38%), Gaps = 32/308 (10%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD---------------------RSVGLVLAH 48
           E  +SL S     + L     F V +++++                     R      A 
Sbjct: 16  EHSISLLSANFFEAQLATLPHFNVLRVELNAKGQYHTQAGELCELTNSQQLRFDDETKAP 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      +S+   +K+ +K   S+ G+P  
Sbjct: 76  WNVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSESSSNCFNKVTAKMWFSALGIPNT 135

Query: 109 PSILVNRFTMDS------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I ++ F   S               IK    GSS+G   +   + +   L ++ +++ 
Sbjct: 136 PYIFLSEFNQQSLEQAEAALAKWGSIFIKAASQGSSVGCYRVDSIEQLASSLEEAFTFSP 195

Query: 163 G---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               ++ +  + ++           A+     I    + +   E    +  +  V+ A +
Sbjct: 196 YVVIEKTITARELEVAAYEADGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEADV 255

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I K++Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M  
Sbjct: 256 DEAIAKQIQEYAIKAFKGMKLRHLSRIDFFLTE-DNEILLNEINTFPGQTQISMFPKMLQ 314

Query: 280 YAGYSFRE 287
             G++F +
Sbjct: 315 NHGHNFAQ 322


>gi|154148214|ref|YP_001406160.1| D-alanyl-alanine synthetase A [Campylobacter hominis ATCC BAA-381]
 gi|153804223|gb|ABS51230.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter hominis
           ATCC BAA-381]
          Length = 342

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/329 (20%), Positives = 119/329 (36%), Gaps = 52/329 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP---------- 51
            ++ GG S E E+S+ S  +    ++     V   D DR+  L+                
Sbjct: 4   GIIFGGQSYEHEISIVSAISLKKVIKKECAYVF-CDQDRNFYLIEPKNMIANYFSSGEYK 62

Query: 52  -------------------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                    D+  NV+HG  GEDG + ++LE   IP+    + A
Sbjct: 63  KAKELTIASNGFYVNGMFSKTRVEADVFVNVIHGCDGEDGKLASLLEFFNIPFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S +S DK  +K +  + G+      ++   T+ S   I  P ++KP   GSS+GI ++K 
Sbjct: 123 SVISYDKELTKNLAKAAGIKTIEYQIIKSSTLPS---IPYPLIVKPSHLGSSIGIKIVKN 179

Query: 147 DQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
              +   +  +   +     +  IE   +     C + G+    + E          ++ 
Sbjct: 180 HNELSYAIDTAFELDSSAIIEPYIEDVKEYNLAGCKIDGEIEFSIIEEPQKDKFLDYFQK 239

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEIN 263
                 S     A + L +   ++      +      G I R DF    ++ +V+  EIN
Sbjct: 240 YMDFSRSGKPQEANLGLSVKDNMKEAFRRVYNYGEFDGAIIRCDFFV--INNEVYLNEIN 297

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             PG     +F          F ++L  +
Sbjct: 298 PNPGSLANYLFN--------DFNDVLNRL 318


>gi|328956078|ref|YP_004373411.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
 gi|328456402|gb|AEB07596.1| D-alanine--D-alanine ligase [Coriobacterium glomerans PW2]
          Length = 375

 Score = 93.8 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 121/375 (32%), Gaps = 80/375 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACAS--------------------ALEDAGFKVSQIDV-- 38
           +AV+MGG S ERE SL SG   A                     AL      V+ I V  
Sbjct: 3   VAVIMGGTSLEREFSLKSGHRIARELEAKDHIVLPLDATSELTCALRSGRPDVALIAVHG 62

Query: 39  ----DRSVGLVLAHLKPDLA-------------------FN---VLHGNFGEDGLVQAIL 72
               D ++  +L  L+                       FN   + H +  ED       
Sbjct: 63  LGGEDGAIQGLLEFLRIPYVGSTSESCRASWNKVDLPRAFNSYLLAHPDRLEDASASRSA 122

Query: 73  ELLEIPYTHS-------------GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
                   H                    L  + +               S+        
Sbjct: 123 HERGCSSEHPADQLDAVFSRVGSDCARDMLPNNPLIPTPKTFCLTEVAFRSMGAAAALDL 182

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P  +KP  GGS++G+  +   +++   ++ +   +  D+++I+++++G+EL+ 
Sbjct: 183 VCDRLGYPVAVKPACGGSAMGVSRVGCQEALGEAIMGAL--SFDDKVIIQEWLEGVELSV 240

Query: 180 GVMG---------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +                       T  A        Y       +       +   D+ 
Sbjct: 241 AICCGQDGAARSLTPVEIAPKETFFTTAARLDPSAVDYFAPVREESLVANGHGRSADDLD 300

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             + R A  A  A+GCR ++R D +        + +++ V PGM+  S+ P   A +G+ 
Sbjct: 301 SLIARTALDAFCALGCRDLARVDMML--SDGVAYVIDVKVAPGMSENSLLPMAVAASGFD 358

Query: 285 FRELLLWMVEDASCL 299
             ++   +V  A+  
Sbjct: 359 LGDIFDGLVRRAAVR 373


>gi|283781146|ref|YP_003371901.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
 gi|283439599|gb|ADB18041.1| D-alanine--D-alanine ligase [Pirellula staleyi DSM 6068]
          Length = 342

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 74/288 (25%), Positives = 125/288 (43%), Gaps = 15/288 (5%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVL-AHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80
            AL + G    +I   R++   L A    DL  N+  G    G +  V AIL++  IPYT
Sbjct: 37  QALAELGHTSDRIGSARALMARLTAGDDWDLVLNIAEGIEGMGREAQVPAILDVYGIPYT 96

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S  L  +L++ K  +KQV+++ G+P  P  ++++        +  P   KP+  G+S G
Sbjct: 97  FSDPLVMSLTLHKGLTKQVLAAAGLPTAPFAVISKLEDLEGLTLPYPLFAKPIAEGTSKG 156

Query: 141 IIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT-------CGVMGDASLDVTE 191
           +  +           + +     H   +L+E Y+DG E T              SL++  
Sbjct: 157 VTSLSKVTSPEALRAICEHLLREHQQSVLVETYLDGREFTTGLLGEGVSTRVLGSLEIKL 216

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +      Y+Y  K +          +   D + KEV+ L+    + +GCR   R D   
Sbjct: 217 RSDSDQVGYTYRNKENCEELIIYDLIRPADDPLVKEVEALSLATWKTLGCRDAGRVDIRC 276

Query: 251 DPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDAS 297
           D L  K + LE+N   G+ P  S  P +A   G ++ EL+  ++  A+
Sbjct: 277 DSL-GKPYLLEVNPLAGLHPEHSDLPMLATKIGMTYTELIGAIIACAT 323


>gi|261838029|gb|ACX97795.1| D-alanine:D-alanine ligase A [Helicobacter pylori 51]
          Length = 347

 Score = 93.4 bits (230), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE---------DAGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S      AL+         D       I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIVLKEALKGRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRTNALNLIGFNFPFIVKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFV--IKNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|283954371|ref|ZP_06371892.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
 gi|283794170|gb|EFC32918.1| LOW QUALITY PROTEIN: D-alanine--D-alanine ligase [Campylobacter
           jejuni subsp. jejuni 414]
          Length = 346

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 113/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVS-SVVLKKVINQNLEFIFCDEERRFYHIPDEKMNSKTFNTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ D   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECDCVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           SALS +K  +K    S GV      ++ +     + LI  P +IKP + GSS+GI ++K 
Sbjct: 123 SALSFNKELTKLYAKSIGVKTLDYTMLRKGQNFKEKLI-FPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLLVEEFKSDIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++  +++      +  +    + R DF    L  +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLGEELKTKLKDNFKKIYNPLFKGALIRCDFFV--LDNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|118474718|ref|YP_891983.1| D-alanyl-alanine synthetase A [Campylobacter fetus subsp. fetus
           82-40]
 gi|118413944|gb|ABK82364.1| D-alanine--D-alanine ligase [Campylobacter fetus subsp. fetus
           82-40]
          Length = 345

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 62/314 (19%), Positives = 109/314 (34%), Gaps = 51/314 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL--------------- 46
            ++ GG+S E E+S+ S  A   AL+    ++S I VD+     L               
Sbjct: 4   GIVFGGVSFEHEISIVSAIAVKKALK---CELSFIFVDKFGDFYLINSDDMRANFFSSHK 60

Query: 47  ----------------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                   L  D   N++HG  GEDG +  + E   + +    +
Sbjct: 61  YKNSKKLHLKKGGFAAHGIFGMNDLNVDCYINLIHGRDGEDGKIAGMFEFYNVTFIGPRL 120

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS +S +K  +K +   C V   P  ++ R  +        P+++KP + GSS+G+ V+
Sbjct: 121 EASVMSFNKELTKLLAHKCAVKSLPYEMIKRGDIV---KTELPFILKPARLGSSIGVSVV 177

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +   ++   L  +        +L+E + +GI         A  D     + +     +  
Sbjct: 178 RDISNLDYALDVAF--EFDKDILVEPFKEGIREFNLAGFKAENDFIYSFIEEPKKNDFLD 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG----CRGISRSDFLFDPLSRKVFWL 260
                 S     AK           +     +          + R DF       +V+  
Sbjct: 236 FEQKYMSFSSSCAKEADIDDSLKIEIKDAFAKIYNGGNFDGALIRCDFFVL--DNEVYLN 293

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 294 EINPNPGSMANYLF 307


>gi|315638159|ref|ZP_07893341.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
 gi|315481695|gb|EFU72317.1| D-alanine-D-alanine ligase [Campylobacter upsaliensis JV21]
          Length = 347

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 110/312 (35%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       L++  +     D +R   L+                
Sbjct: 5   AILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAYK 63

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+     N++HG  GEDG + A+ E   I +    + A
Sbjct: 64  KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV       + +         + P ++KP++ GSS+GI +   
Sbjct: 124 SVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQT-SFKPNFPCILKPVRLGSSIGISIANN 182

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +     +   +   D LL+E +   I+           ++    + +     +    
Sbjct: 183 EEELN--YGKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIKDELIFSIIEEPKKKEFLDFE 240

Query: 207 SSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
               S         A +  ++ ++++      +  +    + R DF       +V+  EI
Sbjct: 241 QKYLSFSGHSELIEADLSEELKEKLKEAFSKIYNPLFKGALIRCDFFIL--DNEVYLNEI 298

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 299 NPNPGSLANYLF 310


>gi|881495|gb|AAA68950.1| unknown [Thermotoga maritima MSB8]
          Length = 128

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 45/94 (47%), Positives = 59/94 (62%), Gaps = 1/94 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLH 59
           +A+LMGG+S ERE+SL SG+    ALE  G++ +  DV       +  LK  D+ FNVLH
Sbjct: 13  VALLMGGVSREREISLRSGERVKKALEKLGYEHTVFDVREDFLKKVDQLKSFDVVFNVLH 72

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           G FGEDG +QAIL+ L I YT S   +S +  DK
Sbjct: 73  GTFGEDGTLQAILDFLGIRYTGSDAFSSMICFDK 106


>gi|300088096|ref|YP_003758618.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527829|gb|ADJ26297.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 330

 Score = 93.4 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 65/311 (20%), Positives = 126/311 (40%), Gaps = 25/311 (8%)

Query: 9   SSE--REVSLS-SGKACASALEDAGF--KVSQIDVDRSVGLVLAHLKPDLAFNVLHG--- 60
           S E   E+S++ +  A  + L + G   +V  +  D S+            FN+  G   
Sbjct: 18  SGESIAELSVADTATAVTAMLSELGHQVEVVPLSPDESITGRRELSDAGFVFNLFEGFAG 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +  V   LE   +P+T     + AL++DK  +  V+   G+      L++      
Sbjct: 78  RPETEAAVARALENTGLPFTGCPASSLALTLDKPATHLVLGYAGLATPRFQLLDPADTAD 137

Query: 121 QHLISPPYVIKPLKGGSSLG---IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P ++KP    +S       V    + + + L + +        L+E++++G E 
Sbjct: 138 -FDLDFPCIVKPPADDASHALSPESVAAGREELAIALNRIAKRYPDSPALVEEFLNGREF 196

Query: 178 TCGVMGDASLD-------VTEIAVPKSDFYSYELKY-----SSLNSTHVLPAKIPLDIYK 225
              V+G+ S         +  +        ++  K+        ++    PA +   +  
Sbjct: 197 NVTVLGNNSPRLLAVSEIIYTLPTGCPRLLTFAAKWSPDSAYYRHTAVRCPAVLDNSLAA 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E++  A  A +A GCRG +R DF  +    +   LE+N  P ++P +     A  AG ++
Sbjct: 257 ELEHAALTAFRATGCRGYARMDFRLNAA-GRPVILEVNANPDLSPEAGVARQAEAAGMTY 315

Query: 286 RELLLWMVEDA 296
           REL+  +V+ A
Sbjct: 316 RELIDAIVKLA 326


>gi|254464679|ref|ZP_05078090.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206685587|gb|EDZ46069.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 336

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 73/288 (25%), Positives = 118/288 (40%), Gaps = 12/288 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLE 76
            A  +AL   G +  +I   R +   LA   + DL FN+  G      +  V A+LE   
Sbjct: 33  AAIENALHARGHQTQRIGHVRILAQRLAAGDRWDLVFNIAEGLQGRAREAQVPALLEAFG 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPY+ S  L  AL +DK  +K+VV   G+P  P  ++     DS   +  P  +KPL  G
Sbjct: 93  IPYSFSDPLTQALGLDKAMAKRVVRDAGIPTAPFAVLETPADDSGLDLPFPIFLKPLAEG 152

Query: 137 SSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           +  G     K          +          +L E ++ G E T G++G+ +       +
Sbjct: 153 TGKGCEHASKANGADQAAAAARSLRQRFRQPVLAESFLPGREFTVGILGNGADARVIAVM 212

Query: 195 PKSDFYS-----YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                 +     Y  +      T V+         +     A  A+ A+GCR  +R D  
Sbjct: 213 EILLLDTAEAEIYSFQNKQQWETRVIYRLADDAEARAAGAAALAAYHALGCRDAARIDLR 272

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
            D       +LE+N  PG+ P  S  P ++A AG  ++ L+  +++ A
Sbjct: 273 SDAA-GIPNFLEVNTLPGLHPSHSDLPILSAKAGLDYQGLIGGILDAA 319


>gi|144897235|emb|CAM74099.1| D-alanine--D-alanine ligase [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 90

 Score = 93.0 bits (229), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 57/89 (64%), Gaps = 4/89 (4%)

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP----LSRKVFWLEINVQPGMTP 270
           +PA IP + Y E  RLA  AH+ +GCRG+SR+D  +D        ++  LE+N QPGMT 
Sbjct: 1   MPAPIPAEDYAEACRLAVEAHRVLGCRGVSRADLRYDDTKPGQKPRLIVLEVNTQPGMTA 60

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            S+ P++A+Y G SF EL+ WMVE A C 
Sbjct: 61  TSLVPDIASYCGISFPELVRWMVEQAECD 89


>gi|108563147|ref|YP_627463.1| D-alanyl-alanine synthetase A [Helicobacter pylori HPAG1]
 gi|122980504|sp|Q1CTD3|DDL_HELPH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|107836920|gb|ABF84789.1| D-alanine:D-alanine ligase A [Helicobacter pylori HPAG1]
          Length = 347

 Score = 92.6 bits (228), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52
            VL GG S E E+S+ S  A    L+D                I+         A +K  
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEASNMHSKYFAQIKEK 63

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHKGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---LISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDHVLLNEKNRANAMDLINFNFPFIIKPNSAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELNYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|224091078|ref|XP_002309171.1| predicted protein [Populus trichocarpa]
 gi|222855147|gb|EEE92694.1| predicted protein [Populus trichocarpa]
          Length = 931

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 80/380 (21%), Positives = 139/380 (36%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++ GG S+ER +SL+S ++    +E    +VS   +D                     
Sbjct: 84  VGLICGGPSAERGISLNSARSVLDHIEGDDLQVSCYYIDYDMNAFAISSAQVYSNTPADF 143

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   +P+  +G   
Sbjct: 144 DFKLESLAKGFSSLDEFAEHLAASVDIVFPVIHGRFGEDGGIQELLERHNVPFVGTGSRE 203

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +S  G    PS LV             FT +     S   V+KP + 
Sbjct: 204 CRKAFDKYDASLELSKQGFITVPSFLVQGSEIEECELSKWFTSNQLDPNSGKVVVKPARA 263

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------------IEL 177
           GSS+G+ V               S    D++L+E +++G                    +
Sbjct: 264 GSSIGVTVAYGVSDSLKKANDLISEGIDDKILVEIFLEGGSEFTAIVLDVGSGFDCHPVV 323

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                 +     +     +   ++Y  KY  +    +  P + PL + + ++  A +  +
Sbjct: 324 LLPTEVEIQFHGSVDVREEDAIFNYRRKYLPTQQVAYHTPPRFPLKVIENIREGASILFR 383

Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G R  +R D  F P S                  + + +IN+  GM   S   + A+ 
Sbjct: 384 QLGLRDFARIDGWFLPNSMHALSSSAGKFGRTELGTIIYNDINLISGMEQTSFLFQQASK 443

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  ++  A CLR
Sbjct: 444 VGFSHSNILRSVIHRA-CLR 462



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 25/60 (41%)

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  +  +    L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 849 NEALERCKHRIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 908



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/20 (60%), Positives = 14/20 (70%)

Query: 3   VLMGGISSEREVSLSSGKAC 22
           VL GG +SER+VSL SG   
Sbjct: 500 VLFGGDTSERQVSLMSGTNV 519


>gi|291447622|ref|ZP_06587012.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
 gi|291350569|gb|EFE77473.1| D-alanine-D-alanine ligase [Streptomyces roseosporus NRRL 15998]
          Length = 332

 Score = 92.6 bits (228), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 57/314 (18%), Positives = 114/314 (36%), Gaps = 22/314 (7%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI------DVDRSVGLVLAHLKPDLA 54
           +AV+ GG ++E E +L S +  A A  + G   S +           +  +L   + D+A
Sbjct: 17  IAVIAGGRTAEAEGTLGSAEQLARAAAELGHHTSLVSVEAAGHPQDRMSALLKAAEHDVA 76

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-- 112
             ++ G       ++  LE L++PY  S  +A+ ++  K     ++ + G+     +   
Sbjct: 77  IPLIPG-------LEGTLEFLDVPYVGSSPVAAGIAAHKGLFNDLLVAAGLGKVRYVYGS 129

Query: 113 -VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +M  +  +S P  +KP + G+S GI  +     +   +  ++  +    +     
Sbjct: 130 GPEVLSMWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAINAAAEHDPVVLIEESVP 189

Query: 172 VDGIELTCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               E    ++              +        +         ++  +      ++   
Sbjct: 190 TPFTEYEVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELDSR 249

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  A    G    +R D   D    +V+  EIN  PG    S FP +   AG+S  
Sbjct: 250 LMEAALAAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFSRP 308

Query: 287 ELLLWMVEDASCLR 300
             L  M++ A   R
Sbjct: 309 RQLELMIDSALFHR 322


>gi|330884029|gb|EGH18178.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea
          str. race 4]
          Length = 91

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 47/85 (55%), Positives = 53/85 (62%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL GG S+ER VSL+SG A   AL DAG     IDV       L   K D AF VLHG
Sbjct: 6  VAVLFGGKSAERAVSLNSGNAVLKALLDAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHG 65

Query: 61 NFGEDGLVQAILELLEIPYTHSGIL 85
            GEDG +Q +LE LEIPYT SG+L
Sbjct: 66 RGGEDGTMQGLLECLEIPYTGSGVL 90


>gi|149922566|ref|ZP_01910996.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
 gi|149816593|gb|EDM76088.1| hypothetical protein PPSIR1_41439 [Plesiocystis pacifica SIR-1]
          Length = 338

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 66/290 (22%), Positives = 107/290 (36%), Gaps = 20/290 (6%)

Query: 26  LEDAGFKVSQIDVDRSVG---LVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPY 79
           LE+ G  V  + V  S+      L   +P + FN+L    G+     LV A LEL  + Y
Sbjct: 43  LENYGHTVLVVGVSDSLEPLERALDEFRPHVVFNLLEEFQGSRAGSHLVLAYLELRGVAY 102

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG-GSS 138
           T        ++ DK  SK ++   GV     ++V       +  +  P ++K L G  S 
Sbjct: 103 TGCNPRGQMMAQDKALSKALLLHYGVQTPDFVVVPVGRKPPRKRLRFPLIVKSLHGDASE 162

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
                        L         H    L+E+Y+ G EL CGV+G   L    +   +  
Sbjct: 163 GLAQASVVRSPSKLAARVDFIHRHHGDALVEEYISGRELYCGVIGYRQLTAFPVWELRMT 222

Query: 199 FYSYELKYSSLNSTHVL------------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                    +                   PA++P  + + +Q ++  A   +   G  R 
Sbjct: 223 KLPTSALNIATQRVKWDLAYQDRVGVELGPARLPPALERRIQDMSKRAFSLLKMTGWGRM 282

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           D+       + ++LE N    +  V  F   A  AG S+ ELL  ++  A
Sbjct: 283 DYRL-AEDGEPYFLEANPNGDIAHVEEFASSAKAAGLSYLELLHRLINIA 331


>gi|317178905|dbj|BAJ56693.1| D-alanyl-alanine synthetase A [Helicobacter pylori F30]
          Length = 347

 Score = 92.6 bits (228), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 62/312 (19%), Positives = 108/312 (34%), Gaps = 41/312 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                ++   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEVLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTRNGLLKSSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIGFNFPFIIKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +K+++ +   L  +  ++    +             G         + I  P    +   
Sbjct: 184 VKEEKELIYALDGAFEYSKEVLIEPFIQEVKEYNLAGCKIKKDFCFSYIEEPNKQEFLDF 243

Query: 204 LKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            +     S +  P       + ++++      +  +    + R DF       +V+  EI
Sbjct: 244 KQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLNEI 301

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 302 NPIPGSLANYLF 313


>gi|218508112|ref|ZP_03505990.1| D-alanine-D-alanine ligase protein [Rhizobium etli Brasil 5]
          Length = 184

 Score = 92.2 bits (227), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 81/184 (44%), Gaps = 12/184 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM--- 182
            P  IKP + GSS+G+  +   Q     L ++    H   LL E++V G E+   V+   
Sbjct: 2   LPLFIKPARQGSSVGVAKVHASQEFAPALAEAF--RHDHTLLAEEFVAGREIEFSVLEDA 59

Query: 183 ----GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 +       A     +           +   +PA++P ++   ++ +A  A +A+
Sbjct: 60  AGDLFVSRPGEIVPAENHGFYNYDAKYVDENGAALKVPAELPPNVEAAMRDMAAKAFRAV 119

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--A 296
           GC G++R DF       +    EIN  PG T +S++ +  A +G S+ E++  +V+   A
Sbjct: 120 GCDGMARVDFFLT-SDMRFLINEINTIPGFTDISMYSKAMAASGVSYAEVIDRLVDHGMA 178

Query: 297 SCLR 300
              R
Sbjct: 179 RAGR 182


>gi|208434649|ref|YP_002266315.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
 gi|208432578|gb|ACI27449.1| D-alanine: D-alanine ligase A [Helicobacter pylori G27]
          Length = 349

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG+S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 6   CVLFGGVSFEHEISIVSAIALKGVLKDRIKYFLFLDENHHFYLIEESNMHSKYFAQIKEK 65

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 66  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 126 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALDLIEFNFPFIVKPSNAGSSLGVNV 185

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFY 200
           +K+++ +   L  +    +  ++LIE ++ G++        +             K +F 
Sbjct: 186 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPSKQEFL 243

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            ++ KY   +      A +   + ++++      +  +    I R DF       +V+  
Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFSGAIIRCDFFVIE--NEVYLN 301

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 302 EINPIPGSLANYLF 315


>gi|78777406|ref|YP_393721.1| D-alanyl-alanine synthetase A [Sulfurimonas denitrificans DSM 1251]
 gi|123550178|sp|Q30R95|DDL_SULDN RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|78497946|gb|ABB44486.1| D-alanine--D-alanine ligase [Sulfurimonas denitrificans DSM 1251]
          Length = 345

 Score = 92.2 bits (227), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 117/310 (37%), Gaps = 43/310 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL------------- 49
           +L GG S E E+S+ S       L +        D D +  L+ A               
Sbjct: 5   ILFGGASFEHEISIVSAITLKEKLSNFELNFIFCDQDHTFYLINASKMRATTFSRGEYKK 64

Query: 50  ------------------KPDL---AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
                               D+     N++HG  GEDG + AIL+   I Y    + AS 
Sbjct: 65  MPKLTLSHGSFVQKSLFGSVDISGTVLNLIHGGDGEDGTIAAILDFFSIKYIGPRVDASV 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            S DK  +K +  + GV    S      +  S   I+ P ++KP + GSS+G+ ++K + 
Sbjct: 125 FSYDKRYTKWLCHARGVKCVES-QELSSSEHSNIKIAYPIIVKPSRLGSSIGVSIVKDES 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   L  +      + +++E +++G++        A        + +     +      
Sbjct: 184 KLDYALDSAF--EFDNTVIVEPFLEGVKEYNLAGFSAGKKFYFSIIEEPQKEEFLDFEKK 241

Query: 209 LNST----HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                   +V  A+I  ++  +++      ++ +    + R DF    ++ +VF  EIN 
Sbjct: 242 YMDFSRSGNVDSAEISKELESKLRASFEKVYKNLFEGALIRCDFFV--VNGEVFLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 IPGSMANYLF 309


>gi|307747710|gb|ADN90980.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni M1]
          Length = 346

 Score = 92.2 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 111/310 (35%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +  P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLRFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|57237643|ref|YP_178891.1| D-alanyl-alanine synthetase A [Campylobacter jejuni RM1221]
 gi|121612276|ref|YP_001000487.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167005423|ref|ZP_02271181.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|81353739|sp|Q5HUZ4|DDL_CAMJR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|189083036|sp|A1VZE6|DDL_CAMJJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|57166447|gb|AAW35226.1| D-alanine--D-alanine ligase [Campylobacter jejuni RM1221]
 gi|87249415|gb|EAQ72375.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|315058252|gb|ADT72581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni S3]
          Length = 346

 Score = 92.2 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      +V +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +++  EIN 
Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|317010958|gb|ADU84705.1| D-alanyl-alanine synthetase A [Helicobacter pylori SouthAfrica7]
          Length = 347

 Score = 92.2 bits (227), Expect = 9e-17,   Method: Composition-based stats.
 Identities = 68/314 (21%), Positives = 119/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEKSNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    + A
Sbjct: 64  KLPPLMLAHNGLLKNSFLGTKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K    S GV     IL+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKHLTKLYAKSLGVKTLDHILLNEKNRANALDLINFNFPFIVKPNSAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +++++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VREEKELAYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P   IP  + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRAKAPKADIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|205356768|ref|ZP_03223527.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|205345335|gb|EDZ31979.1| D-alanine-D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CG8421]
          Length = 346

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      +V +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMVRKGQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +++  EIN 
Sbjct: 242 YLSFSGHNELIEANLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|317012549|gb|ADU83157.1| D-alanyl-alanine synthetase A [Helicobacter pylori Lithuania75]
          Length = 347

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    + A
Sbjct: 64  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDHVLLNEKNRANALNLIGFNFPFIIKPNSAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLAHYLF 313


>gi|86153489|ref|ZP_01071693.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
 gi|85843215|gb|EAQ60426.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           HB93-13]
          Length = 346

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 113/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFNKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  + +  + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFAFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|239617317|ref|YP_002940639.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
 gi|239506148|gb|ACR79635.1| D-alanine--D-alanine ligase [Kosmotoga olearia TBF 19.5.1]
          Length = 321

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/296 (21%), Positives = 124/296 (41%), Gaps = 23/296 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--LVQAILELLEI 77
           +A   AL         + +D      +     D AFN+  G           AIL+ L +
Sbjct: 20  EAVIRAL-SKKHDSQPLPIDEKFMETVKE--YDFAFNLSTGGGKLSKQVHAPAILDRLGV 76

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P+T S  +  A+ +DK  +K ++   G+P    + ++      +     P  +KP   GS
Sbjct: 77  PFTGSSAIVHAICIDKSITKLILEKSGIPTPRFVKIDDPNNIPEIDF-YPAFVKPSCEGS 135

Query: 138 SLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           +LGI    V+K  + +   +    +       ++E+++DG E T G++G+ +       +
Sbjct: 136 ALGISRDSVVKNQKELKKQVEMIMN-KFNQPAIVEEFIDGREFTVGIIGNGNDLKVLPIL 194

Query: 195 -------PKSDFYSYELKYSSLN---STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                  P+   + Y  +        +T++ PA++     K+++  A  A +AIG    +
Sbjct: 195 EIDFSNLPEGLEHFYSHRVKHHYGEKTTYICPARLEESQRKKLENYAKRAFKAIGLFDFA 254

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           R D        + + +E+N  P + P  S   +M A  G+ + +L+  ++E A   
Sbjct: 255 RIDVRMRV--NEFYIIEVNSLPLLVPVYSDLTKMLAPIGWKYEDLVNAILEAAIAR 308


>gi|242309199|ref|ZP_04808354.1| ligase [Helicobacter pullorum MIT 98-5489]
 gi|239524240|gb|EEQ64106.1| ligase [Helicobacter pullorum MIT 98-5489]
          Length = 345

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 110/311 (35%), Gaps = 43/311 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALE--------DAGFKVSQIDVDR------SVGLVLA 47
            VL GG S E E+S+ S       L         D       I  D+      S    L 
Sbjct: 4   CVLFGGSSYEHEISIVSAITLKKLLPSIETFVFLDGNHNFYLIPKDKMQSKFFSSKEYLK 63

Query: 48  HLKPDL--------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +K  L                      N++HG  GE+G++ ++L+   I Y      A 
Sbjct: 64  EMKIYLKVGGFYHKTLLGEKKLPMPMVLNLIHGGDGENGVIASLLDFYGIAYIGPRNPAC 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS DK  +K +  + G+       V       +     P +IKP + GSS+GI +    
Sbjct: 124 VLSFDKELTKLLAKNRGILSLDY-QVLYKGAQKEIKFPFPVIIKPARLGSSIGIFIANNQ 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL--- 204
           + +   L    ++ + ++ ++E ++ GI+        ++  +    V +     +     
Sbjct: 183 KELDYGL--EEAFEYDNKAIVEPFISGIKEYNLAGYKSAQGIKFSFVEEPQKKEFLDFEK 240

Query: 205 -KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  + +   A IP  + K +Q      ++ +    + R DF         +  EIN
Sbjct: 241 KYLDFSRTQNAKEADIPEALQKTLQDNFIKIYENLFEGALIRCDFFV--KDDLCYLNEIN 298

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 299 PIPGSMANYLF 309


>gi|157415069|ref|YP_001482325.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           81116]
 gi|189083034|sp|A8FLL1|DDL_CAMJ8 RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|157386033|gb|ABV52348.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni 81116]
 gi|315931216|gb|EFV10188.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 346

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFVFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  NEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|57242125|ref|ZP_00370065.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
 gi|57017317|gb|EAL54098.1| D-alanine--D-alanine ligase [Campylobacter upsaliensis RM3195]
          Length = 346

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 110/312 (35%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       L++  +     D +R   L+                
Sbjct: 4   AILFGGNSYEHEISIVSAVVLKKVLDEEPY-FIFCDEEREFYLIKASNLNAKTFSSKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+     N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKKLILKQGGFYLEGFLGEKKLEIKCVINLIHGRDGEDGKIAALFEFFNINFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV       + +         + P ++KP++ GSS+GI +   
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYFTLKKGLQT-SFKPNFPCILKPVRLGSSIGISIANN 181

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +     +   +   D LL+E +   I+           ++    + +     +    
Sbjct: 182 EEELN--YSKDVGFEFDDTLLVEDFKKDIKEYNLAGCMIGDELIFSIIEEPKKKEFLDFE 239

Query: 207 SSLNSTHVL----PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
               S         A +  ++ ++++      +  +    + R DF       +V+  EI
Sbjct: 240 QKYLSFSGHSELIEADLSEELKEKLKESFSKIYNPLFKGALIRCDFFIL--DNEVYLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NSNPGSLANYLF 309


>gi|332673460|gb|AEE70277.1| D-alanine-D-alanine ligase [Helicobacter pylori 83]
          Length = 356

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A   AL+D                I+   +       +   
Sbjct: 13  CVLFGGASFEHEISIVSTIALKEALKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 72

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 73  KLPPLILTRNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 132

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 133 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 192

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 193 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 250

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 251 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 308

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 309 EINPIPGSLANYLF 322


>gi|109947256|ref|YP_664484.1| D-alanyl-alanine synthetase A [Helicobacter acinonychis str.
           Sheeba]
 gi|123066260|sp|Q17XZ1|DDL_HELAH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|109714477|emb|CAJ99485.1| D-alanine-D-alanine ligase [Helicobacter acinonychis str. Sheeba]
          Length = 350

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 112/314 (35%), Gaps = 43/314 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQIDVDRSVGLVLAHLKPD 52
            VL GG S E E+S+ S  A    L+D                I+         A +K  
Sbjct: 5   CVLFGGASFEHEISIVSAIALKEVLKDQIKYFIFLDENHHFYLIEASNMHSKYFAQIKEK 64

Query: 53  --------------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                     L  N++HG  GEDG + ++LE   I +  S + A
Sbjct: 65  KLPPLMLTHNGLLKNSFLGAKTIELPLMINLVHGGDGEDGKLASLLEFYRIAFIGSRVEA 124

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGI 141
           S LS +K  +K    + GV     IL+N     +         + P+++KP   GSSLG+
Sbjct: 125 SVLSYNKHLTKLYAKNLGVKTLDCILLNEKNRANALDLIKPSFNFPFIVKPNNAGSSLGV 184

Query: 142 IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            V+K+++ +   L  +  ++    +             G         + +  P    + 
Sbjct: 185 SVVKEEKELAYALDGAFEYSKEVLIEPFIQRVKEYNLAGCKIKEDFCFSYVEEPNKQEFL 244

Query: 202 YELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P   IP  + ++++      +  +    I R DF    +  +V+  
Sbjct: 245 DFKQKYLDFSRTKAPKANIPNALEEQLRENFKKLYNDLFDGAIIRCDFFV--IDNEVYLN 302

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 303 EINPIPGSLANYLF 316


>gi|315453894|ref|YP_004074164.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
 gi|315132946|emb|CBY83574.1| putative D-alanine--D-alanine ligase [Helicobacter felis ATCC
           49179]
          Length = 344

 Score = 91.9 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 113/314 (35%), Gaps = 46/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQI-DVDRSVGLV--------------- 45
            VL GG+S E E+S+ S  A    L     +     D  R+  L+               
Sbjct: 4   GVLFGGVSYEHEISIVSAVALKEVL-GTKIECFIFLDGARNFYLISSKDMRSNFFAKGQY 62

Query: 46  --------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
                                  L   +  N++HG  GEDG + ++LE   +P+    + 
Sbjct: 63  KKCPKLVLKQNGFYMQGFLGEKQLNFSMLINLVHGGDGEDGKLASMLEFFNLPFIGPRVE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A  +SM+K  +K      GV V P + ++     +   +  P + KP   GSS+GI VI 
Sbjct: 123 ACTVSMNKYFTKMFAKERGVKVLPYVFLDSHDNSALENLDYPLIAKPNHLGSSIGISVIH 182

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYS 201
           + + +         +    Q ++E +  G++      C       +        K +   
Sbjct: 183 EPKDV--AYGLDEVFEFDSQAIVEPFKAGVKEYNLAGCMGQDGEFIFSMIEEPTKKELLG 240

Query: 202 YELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +E KY     +  +  A I   +  ++Q      +       + R DF    +  +++  
Sbjct: 241 FEEKYLDFGRTQTISKANISPHLELQMQNAFKKLYDPFFIGALIRCDFFV--IDNEIYLN 298

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 299 EINPIPGSLAHYLF 312


>gi|300863798|ref|ZP_07108724.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
 gi|300338199|emb|CBN53870.1| D-alanine--D-alanine ligase domain protein [Oscillatoria sp. PCC
           6506]
          Length = 329

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 71/286 (24%), Positives = 122/286 (42%), Gaps = 14/286 (4%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80
           + L   G KV +I   R + L L    + DL FN+  G      +  V A+ EL   PYT
Sbjct: 39  NTLCGLGHKVERIGNGRELALRLVKGDRWDLIFNIAEGLKGRSREAQVPAVCELFAQPYT 98

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S  L  AL++DK  +K+VV   G+P  P  +V+         +  P  +KP+  GSS G
Sbjct: 99  FSDPLTCALTLDKAMTKRVVRDFGLPTAPFEVVSTSEQAIAISLPMPLFLKPIAEGSSKG 158

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           I      +       + Q+        +L+E ++ G E+  G++G+ +       +    
Sbjct: 159 ITEKSLVKESQDLVAVYQALQEEFQQPVLVETFLPGKEIAVGIVGNGNQARVIAVMEIIF 218

Query: 199 FYS-----YELKYSSLNSTHVLPA--KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                   Y           V       P  +  + ++LA   + ++GC   +R +   D
Sbjct: 219 TKKAEIAAYTALNKDKYLERVSYRLLTDPEPLAAQARQLALDVYHSLGCLDAARVELRGD 278

Query: 252 PLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
            ++ ++ +LE+N   G+ P+ S    MA  AG  + +L+  +VE A
Sbjct: 279 -VTGELQFLEVNPLSGIHPINSDLVIMARLAGIEYAQLIGEIVESA 323


>gi|242047420|ref|XP_002461456.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
 gi|241924833|gb|EER97977.1| hypothetical protein SORBIDRAFT_02g002970 [Sorghum bicolor]
          Length = 945

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 72/381 (18%), Positives = 134/381 (35%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           + ++ GG S ER VSL+S ++    ++     V    +D                     
Sbjct: 74  VGLICGGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFAISPAQLYSNTPSDF 133

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 134 DFKLESLAQGFDSLSDFAEHLAINVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKE 193

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN-----------RFTMDSQHLISPPYVIKPLKG 135
              + DK  +   +++ G    P+ LV             F   + +  +   ++KP + 
Sbjct: 194 CERAFDKHNASLELNAQGFLTVPNFLVEKDKLAKPELEAWFKTVNLNKENGKVIVKPTRA 253

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IELTCGVMGDASLDVTEI 192
           GSS+G++V            +  S    D+++IE +++G          +G A+     +
Sbjct: 254 GSSIGVVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSQPVV 313

Query: 193 AVPKSDFYSYELKYSSLNST---------------HVLPAKIPLDIYKEVQRLAFLAHQA 237
            +P      Y     +   T               +  P + P ++   +++   L  + 
Sbjct: 314 LLPTEVELQYSNSSDTDEDTIFNYRKKYLPSRQVAYHSPPRFPAEVIDCIRQGISLLFRR 373

Query: 238 IGCRGISRSDFLF------------------DPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            G    +R D  F                  +     V + +IN+  GM   S   + A+
Sbjct: 374 FGLHDYARVDGWFLPSPVASLSSAENSEKFGNTKYGTVLFTDINLISGMEQTSFLFQQAS 433

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 434 AVGFSHSRILRTVVQHA-CSR 453



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/62 (27%), Positives = 29/62 (46%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  D  +  ++   +   A+G  G SR D   +  S +V  +E+N  PGMTP ++    A
Sbjct: 861 MGEDALQRCKKSIEMMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQA 920

Query: 279 AY 280
             
Sbjct: 921 LA 922



 Score = 42.2 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L+  GF 
Sbjct: 491 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 518


>gi|222823640|ref|YP_002575214.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
 gi|254767723|sp|B9KFX8|DDL_CAMLR RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|222538862|gb|ACM63963.1| D-alanine--D-alanine ligase [Campylobacter lari RM2100]
          Length = 346

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSG---KACASA------LEDAGFKVSQID-------------VD 39
            V+ G  S E E+S+ S    K    A       +    +   ID               
Sbjct: 4   GVIFGANSYEHEISIVSAVVLKKVLKAQKKFIFCDKNK-EFFLIDEEKMNAKTFSSGAYK 62

Query: 40  RSVGLVLAHLKP-------------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   LVL                  D+A N++HG  GEDG + A+L+   I Y    I A
Sbjct: 63  KEKALVLKQGGFFIKTMLGEKKLDMDVAVNIVHGKDGEDGKIAALLDFYGIKYIGPRIEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++     +    +S P ++KP + GSS+GI ++K 
Sbjct: 123 SVLSFNKALTKLYAQSVGVKTLDYKVL-NLHKEQNVSLSFPCILKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  +      +  ++     +  +    +     C +       + E           + 
Sbjct: 182 ESELKYAKDVAFEFDEDVVVEQFVSNIKEYNLAGCMIGEKMEFSIIEEPRKNEILDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                 S+ V  A I  ++ ++++      +  +    + R DF    +  +V+  EIN 
Sbjct: 242 YLGFSESSKVSEANISEELKQKLRDNFTRIYNPLFKGALIRCDFFV--IDDEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|171848811|pdb|2PVP|A Chain A, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
 gi|171848812|pdb|2PVP|B Chain B, Crystal Structure Of D-Alanine-D-Alanine Ligase From
           Helicobacter Pylori
          Length = 367

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 24  CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 83

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 84  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 143

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 144 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 203

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 204 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 261

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF       +V+  
Sbjct: 262 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE--NEVYLN 319

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 320 EINPIPGSLANYLF 333


>gi|66816919|gb|AAY56773.1| D-alanine-D-alanine ligase [Helicobacter pylori]
          Length = 347

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKTLDYVLLNEKNRANALDLMNFNFPFIVKPSNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKASLSNALEEQLKENFKKLYSDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|307322893|ref|ZP_07602187.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891461|gb|EFN22353.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 321

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 78/303 (25%), Positives = 131/303 (43%), Gaps = 11/303 (3%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            +L GG S+ER  SL +  A    L+     V  +D D    L+ A  + D   NV++G 
Sbjct: 20  VLLAGGSSTERGGSLETKNALLPYLQKLCRSVEVVDPDEVDHLLSAVRQCDFVLNVVYGA 79

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFT 117
            GEDG +Q  L+ L +PY+   +LASA+ M+K     ++ + G PV        L +  T
Sbjct: 80  GGEDGRIQGFLDTLRVPYSGPSVLASAIGMNKEVFVALLRAWGYPVPYGRLATTLEDPRT 139

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +   S   V+KP+  GSSLGI ++    +    + Q    +   +  +E++++G   
Sbjct: 140 WPRELQQSKVLVLKPIDEGSSLGIKMLDGQAASAEAISQIEPCDR-SRWRLEEFIEGASG 198

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T G+       V   AV           +            +     + V+  A   +Q 
Sbjct: 199 TVGIFQVGPEFVIGDAVVFDIPDGRRF-FDDQLKIRPKSRILHGPAAERVRNDALTLYQQ 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + C+G+ R DF++        +LE+N  PG+ P S  P       +SF + L   +  A+
Sbjct: 258 LNCKGLVRLDFIY--RDSAPVYLEVNTIPGLHPDSTAPLSFQSR-FSFEDFLT--LSTAA 312

Query: 298 CLR 300
            +R
Sbjct: 313 QIR 315


>gi|167623784|ref|YP_001674078.1| D-alanyl-alanine synthetase A [Shewanella halifaxensis HAW-EB4]
 gi|189083051|sp|B0TRK1|DDL_SHEHH RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|167353806|gb|ABZ76419.1| D-alanine--D-alanine ligase [Shewanella halifaxensis HAW-EB4]
          Length = 333

 Score = 91.5 bits (225), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 36/310 (11%)

Query: 11  EREVSLSSGKACASALEDA-GFKVSQIDVD------------------RSVGLVLAHLKP 51
           E  +SL S     + L     F V +++++                  + +        P
Sbjct: 16  EHSISLLSANFFETQLATLPHFNVLRVELNAKGQYRTQAGELCELTNSKQIRFNDQSKAP 75

Query: 52  ---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D     +HG  GE G +Q+  EL+ +PY      AS+   +K+ +K   S+ G+   
Sbjct: 76  WDVDYVIPCIHGYPGETGDIQSYFELINLPYFGCDSEASSNCFNKVTAKMWFSALGIRNT 135

Query: 109 PSILVNRFTMD------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
           P I +N F                   IK    GSS+G   +   + +   L ++    +
Sbjct: 136 PYIFLNEFNQQAIEETERALEKWGSIFIKAASQGSSVGCYRVDNKEQLANSLEEAF--KY 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              +++E+ ++  EL           +           +    +    + +     +   
Sbjct: 194 SPYVVVEKTINARELEVAAYEVDGEIIATKPGEIICASNTFYSFDEKYAENSQAQTVIEA 253

Query: 223 -----IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                I K++Q  A  A + +  R +SR DF       ++   EIN  PG T +S+FP+M
Sbjct: 254 DVDEVIAKQIQEYAIKAFKGMKLRHLSRIDFFLTDE-NEILLNEINTFPGQTQISMFPKM 312

Query: 278 AAYAGYSFRE 287
               G++F +
Sbjct: 313 LQNHGHNFAQ 322


>gi|86150203|ref|ZP_01068430.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|218562426|ref|YP_002344205.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|22095570|sp|Q9PPC2|DDL_CAMJE RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|85839319|gb|EAQ56581.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           CF93-6]
 gi|112360132|emb|CAL34926.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|284926044|gb|ADC28396.1| D-alanyl-alanine synthetase A [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 346

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +++  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|88597497|ref|ZP_01100731.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
 gi|88190089|gb|EAQ94064.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           84-25]
          Length = 346

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDKERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +++  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|255029325|ref|ZP_05301276.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28]
          Length = 170

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 27/98 (27%), Positives = 51/98 (52%), Gaps = 1/98 (1%)

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+DF       ++F
Sbjct: 58  FYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAIQAFLGLDASGLVRADFFLTE-DNQLF 116

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             E+N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 117 LNEVNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 154


>gi|134081480|emb|CAK46493.1| unnamed protein product [Aspergillus niger]
          Length = 335

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 61/297 (20%), Positives = 103/297 (34%), Gaps = 19/297 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELL 75
            +  A+AL++ G +V  +    S+   LAH +    DLAFN   G  G     Q    L 
Sbjct: 37  AEHIAAALKNLGHEVVLVPDIHSLVKRLAHGEGSTWDLAFNTTEGLHGLAREGQVPALLE 96

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
                 +   A+ +++   + +  VS   +                 L   P  +KPL  
Sbjct: 97  AYQIPFTFSDAATMTLCLDKGRTKVSLDEILSMI----RMSRHSETLLSQYPLFVKPLAE 152

Query: 136 GSSL---GIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMGDASLDVTE 191
           GSS        IK  +S+   +      +     +L+E+Y+ G E T G++G        
Sbjct: 153 GSSKGIGATNKIKSIESLCDVVNSLRDSSPSSLGVLVEKYLPGREFTVGILGTGEDAWVV 212

Query: 192 IAVPKSDFYSYELKYSSLNST----HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                          +  +        +             + A  A   + CR   R D
Sbjct: 213 GVDEIYGAAKSRRILTPTDDWAGEADEIKIGWDDQEADLACQTALRAWTVLRCRDGGRID 272

Query: 248 FLFDPLSRKV-FWLEI--NVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              D     V   +EI  N   G+ P  S  P +A +   S+ EL+ ++++ A   R
Sbjct: 273 IRMDHSGSPVAHVMEIQINPLAGLLPHWSQLPMIAEHNNVSYNELIEYILKSALQRR 329


>gi|86152116|ref|ZP_01070328.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
 gi|85840901|gb|EAQ58151.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           260.94]
          Length = 346

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIQQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DDEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|255586280|ref|XP_002533792.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
 gi|223526281|gb|EEF28594.1| D-alanine-D-alanine ligase, putative [Ricinus communis]
          Length = 1000

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 76/380 (20%), Positives = 136/380 (35%), Gaps = 81/380 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++ GG S+ER +SL+S ++    ++     VS   +D                     
Sbjct: 86  VGLICGGPSAERGISLNSARSVLDHIQGEDLHVSCYYIDYELNAYAISPAQVYSNTPADF 145

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 146 DFKLESLARQFSSLSEFAEHLAASVDIVFPVIHGRFGEDGGIQELLENYNIPFVGTGSSE 205

Query: 87  SALSMDKMRSKQVVSSC-GVPVCPSILVNRFTMDSQHLISPP----------YVIKPLKG 135
              + DK  +   +S    + V   ++  +   +S+                 V+KP   
Sbjct: 206 CRQAFDKYYASIELSKRGFITVPNFLVQGKEADESELFKWFASNRLDPTSGTVVVKPAVA 265

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG------------------IEL 177
           GSS+G+ V                    D++L+E ++DG                    +
Sbjct: 266 GSSIGVTVAYGVADSLKKAKDLILEGIDDKVLVELFLDGGSEFTAIVVDVGSGFECHPVV 325

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                 +     +         ++Y  KY  +    +  P + P+DI K++++ A L  Q
Sbjct: 326 LLPTEVELQFHGSADIRENDAIFNYRRKYLPTQQVAYHTPPRFPVDIIKKIRQGASLLFQ 385

Query: 237 AIGCRGISRSDFLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAAY 280
            +  R  +R D  + P S                  + + +IN+  GM   S   + A+ 
Sbjct: 386 RLRLRDFARIDGWYLPSSNSAFSSSEGKFGRTDLGTILFTDINLISGMEQTSFLFQQASK 445

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G+S   +L  ++  A CLR
Sbjct: 446 VGFSHSNILRSIIHRA-CLR 464



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 15/60 (25%), Positives = 26/60 (43%)

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++    ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 868 NEVLDRCKQHIELIANTLQLEGFSRIDAFLNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 927



 Score = 43.7 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 5/37 (13%)

Query: 3   VLMGGISSEREVSLSSGKAC---ASALEDAGFKVSQI 36
           VL GG +SER+VSL SG        A +D    V+  
Sbjct: 502 VLFGGDTSERQVSLMSGTNVWLKLQAFDDL--DVTPC 536


>gi|15645358|ref|NP_207532.1| D-alanyl-alanine synthetase A [Helicobacter pylori 26695]
 gi|2829460|sp|P56191|DDL_HELPY RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|2313860|gb|AAD07784.1| D-alanine:D-alanine ligase A (ddlA) [Helicobacter pylori 26695]
          Length = 347

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 67/314 (21%), Positives = 117/314 (37%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDHVLLNEKNRANALDLMNFNFPFIIKPNNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELVYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF    +  +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFV--IKNEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|237753178|ref|ZP_04583658.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375445|gb|EEO25536.1| D-alanyl-alanine synthetase A [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 345

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/311 (19%), Positives = 109/311 (35%), Gaps = 43/311 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQ-------------------------- 35
            +L GG S E E+S+ S  A    L      V                            
Sbjct: 4   CLLFGGKSYEHEISIVSAIALKKLLPKIKHFVFLDSNHNFYLIPKEQMQSKFFSTKSYEK 63

Query: 36  ---IDVDRSVG--LVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              I   +       L   KP    +  N++HG  GEDG + ++L+   IPY      A 
Sbjct: 64  TQKIYPKKDGFYTRTLFGEKPLNLPVILNLIHGGDGEDGTLASLLDFYGIPYIGPRNPAC 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            LS DK   K   +S GV      ++ R  +     +  P +IKP + GSSLGI V++  
Sbjct: 124 VLSYDKELIKGFAASRGVKCLAHRVLYRNDLVPS-DLEFPIIIKPARLGSSLGIQVVESQ 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +++   L  +    + ++++IE +++GI+            +    + + +   +     
Sbjct: 183 ENLQYALDSAF--EYDEKVIIEPFIEGIKEYNLAGFKGKDGIQFSFIEEPEKSKFLDFEK 240

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWLEIN 263
                         +I   +++    +   +        + R DF         +  EIN
Sbjct: 241 KYLDFSRTSNAKEAEISDALKQALQESFTRLYNNAFEGALIRCDFFI--KDNDCYLNEIN 298

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 299 PVPGSLANYLF 309


>gi|289746780|ref|ZP_06506158.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
 gi|289687308|gb|EFD54796.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 133

 Score = 91.1 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 34/130 (26%), Positives = 54/130 (41%), Gaps = 2/130 (1%)

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                            + V  +   +  FY +  KY    +   +PAK+   + + +++
Sbjct: 1   MCSKCRTAQGEASTLGEIRVAGVRGREDSFYDFATKYLDDAAELDVPAKVDDQVAEAIRQ 60

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA  A  AI CRG++R DF            EIN  PG T +S++P M   +G  +  LL
Sbjct: 61  LAIRAFAAIDCRGLARVDFFLT--DDGPVINEINTMPGFTTISMYPRMWEASGVDYPTLL 118

Query: 290 LWMVEDASCL 299
             M+E A   
Sbjct: 119 ATMIETALAR 128


>gi|49183264|ref|YP_026516.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|65317672|ref|ZP_00390631.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
 gi|165871535|ref|ZP_02216181.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167634137|ref|ZP_02392459.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|167640293|ref|ZP_02398558.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|170687730|ref|ZP_02878945.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|170707870|ref|ZP_02898320.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|177653413|ref|ZP_02935623.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190567364|ref|ZP_03020278.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812913|ref|YP_002812922.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229604016|ref|YP_002864872.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
 gi|254686587|ref|ZP_05150446.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. CNEVA-9066]
 gi|254734935|ref|ZP_05192647.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Western
           North America USA6153]
 gi|254739720|ref|ZP_05197413.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Kruger B]
 gi|254754909|ref|ZP_05206944.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Vollum]
 gi|254756952|ref|ZP_05208980.1| D-alanyl-alanine synthetase A [Bacillus anthracis str. Australia
           94]
 gi|49177191|gb|AAT52567.1| D-alanine--D-alanine ligase, C-terminus [Bacillus anthracis str.
           Sterne]
 gi|164712639|gb|EDR18170.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0488]
 gi|167511695|gb|EDR87076.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0193]
 gi|167530451|gb|EDR93166.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0442]
 gi|170127228|gb|EDS96105.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0389]
 gi|170668257|gb|EDT19005.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0465]
 gi|172081453|gb|EDT66526.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis str.
           A0174]
 gi|190561491|gb|EDV15462.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007521|gb|ACP17264.1| D-alanine--D-alanine ligase [Bacillus anthracis str. CDC 684]
 gi|229268424|gb|ACQ50061.1| D-alanine--D-alanine ligase [Bacillus anthracis str. A0248]
          Length = 91

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 42/78 (53%), Gaps = 1/78 (1%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +    ++R A +A Q++   G++R+DF       +V+  E+N  PG TP S+FP + 
Sbjct: 1   MTEEESNVIKRDAIVAFQSLDGAGLTRADFFLT-KDGEVYINEVNTMPGFTPFSMFPLLW 59

Query: 279 AYAGYSFRELLLWMVEDA 296
            + G  + EL+  ++  A
Sbjct: 60  QHTGLPYPELIEELIRLA 77


>gi|283468531|emb|CAP18811.1| putative D-ala D-ala ligase [Opitutus terrae PB90-1]
          Length = 241

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 6/169 (3%)

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            V+KP   GSS+G+ ++   + +   L          + +IE+ + G EL  GV+   ++
Sbjct: 66  VVVKPNAEGSSVGLNLVGSREELTRVLDVIQ----NGRWIIERRIFGRELAVGVLNGRAM 121

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                  PKS  Y Y  KY+   + ++ PA +   + +++Q  A  A  A GCR  +R D
Sbjct: 122 -GVVEIRPKSGVYDYASKYTKGMTNYLAPAPLDAALTQKIQAAAQTAFAACGCRDYARVD 180

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           F+      +++ LEIN  PGM   S  P  A   G  F  L+  MV  A
Sbjct: 181 FIL-GDDHELYLLEINTHPGMKETSQLPMSARCEGIDFTALVKAMVTLA 228


>gi|215404957|ref|ZP_03417138.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis 02_1987]
          Length = 134

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PAK+   + + +++LA  A  AI CRG++R DF            EIN  PG T +S++P
Sbjct: 48  PAKVDDQVAEAIRQLAIRAFAAIDCRGLARVDFFLT--DDGPVINEINTMPGFTTISMYP 105

Query: 276 EMAAYAGYSFRELLLWMVEDASCL 299
            M   +G  +  LL  M+E A   
Sbjct: 106 RMWEASGVDYPTLLATMIETALAR 129


>gi|148926964|ref|ZP_01810641.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
 gi|145845048|gb|EDK22145.1| putative D-alanine--D-alanine ligase [Campylobacter jejuni subsp.
           jejuni CG8486]
          Length = 346

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 55/310 (17%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  ++ P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDCTMLRKNQNSKE-KLNFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +++  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEIYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|302389045|ref|YP_003824866.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
 gi|302199673|gb|ADL07243.1| D-alanine--D-alanine ligase [Thermosediminibacter oceani DSM 16646]
          Length = 324

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 58/305 (19%), Positives = 111/305 (36%), Gaps = 34/305 (11%)

Query: 17  SSGKACAS-----------ALEDAGFKVSQIDVDRSVGL----VLAHLKPDLAFNVLHGN 61
            SG+               A+++AGF    I+  +         +   K DL FN     
Sbjct: 19  LSGENIYDDAYEEAYQHFSAIKEAGFDAVMIEWKKDNPQETLRKVLEEKVDLVFNAS--- 75

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 ++ +  L       +G     ++ DK   K++V+   +P    I+V        
Sbjct: 76  -----SLEEVAFLEAFGIPFAGSGLDLVATDKATRKKIVAYHKLPTPRFIVVEDPNEIPD 130

Query: 122 HLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           H +  P  +KP++G  S GI      +       ++   +   G   L+E+++ G E+T 
Sbjct: 131 HDLKYPLFVKPVRGRGSAGISEENIIERHEDLARVVSKITDKIGQPALVEEFIRGREITV 190

Query: 180 GVMGDASLD--VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           G++G  +            S   +        N     PA++  +  ++V+  A   ++ 
Sbjct: 191 GIIGYKNPRVLPPVEIEYNSTRTNTFEHKMFDNEIIHCPARLSPEEEEKVKSTALSIYKV 250

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGM------TPVSIFPEMAAYAGYSFRELLLW 291
           +  +  SR D +        ++LEIN   G+      T       MA  AG +  + +  
Sbjct: 251 LNAKDFSRIDMIL-GDDGIPYFLEINTFAGLTMSKDGTHHGYMGYMAKTAGMTRADFIGS 309

Query: 292 MVEDA 296
           +V  A
Sbjct: 310 IVRSA 314


>gi|256786060|ref|ZP_05524491.1| D-alanine--D-alanine ligase B [Streptomyces lividans TK24]
          Length = 364

 Score = 90.7 bits (223), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 79/313 (25%), Positives = 144/313 (46%), Gaps = 21/313 (6%)

Query: 1   MAVLMGGISSE----RE---VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53
           +A++ G +S+E         V   S  A A ALE+ G +   ++       ++  ++ D+
Sbjct: 32  VALVNGPVSAEDRLYHSKCPVEQRSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDV 90

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           A + LHG +GEDG +Q +L+ L +PY  SG+ ASA++ DK+  K+V+ + GVP     + 
Sbjct: 91  ALSNLHGPYGEDGRLQGLLDYLRVPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVW 150

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           +   +          ++KP  GGSS+G+ +++    +P  L  ++       +LIE+YV 
Sbjct: 151 SGGPVAWYGRT---IMVKPPFGGSSVGMSLVRDPADLPGALADAAGDGC-APVLIEEYVT 206

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYS---YELKYSSLNSTHVLPAKIPLDIYK----E 226
           G  +T G++              ++      Y+                  ++      +
Sbjct: 207 GTPMTVGLLELPGGSAVVFPPLTTEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDK 266

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A      +G RG +R DF+      + + LE+N  PGM+  S F   AA  G +  
Sbjct: 267 ITAHARTLWNGLGLRGSARIDFILTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHT 325

Query: 287 ELLLWMVEDA-SC 298
           E++L M+ +A +C
Sbjct: 326 EVVLAMLHEALAC 338


>gi|308182897|ref|YP_003927024.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
 gi|308065082|gb|ADO06974.1| D-alanyl-alanine synthetase A [Helicobacter pylori PeCan4]
          Length = 347

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S       L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLSPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      G+     +L+N     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGIKALDYVLLNERNRANALDLIGFNFPFIIKPNNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+ + +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEKKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P     + + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFVIE--DEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|317009252|gb|ADU79832.1| D-alanyl-alanine synthetase A [Helicobacter pylori India7]
          Length = 347

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILAHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDCVLLNEKNRANALNLMNFNFPFIVKPNSAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|58698113|ref|ZP_00373036.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
 gi|58535359|gb|EAL59435.1| D-alanine-D-alanine ligase [Wolbachia endosymbiont of Drosophila
           ananassae]
          Length = 190

 Score = 90.7 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 44/121 (36%), Positives = 64/121 (52%), Gaps = 1/121 (0%)

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                        +      + FY YE KY+   + H+ PAKIP +IYK     A   HQ
Sbjct: 54  HWSVKRLTQHFPASYKKFHFNKFYDYEAKYTDGFAEHIFPAKIPDNIYKMTLEHALKIHQ 113

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVED 295
            +GC+ ISRSDF ++P +  +  LEIN  PG T +S+ PE+A    G +F EL+  ++ED
Sbjct: 114 FLGCKTISRSDFRYNPKNNTLKMLEINTHPGFTELSLVPEIAKLAKGINFNELVKIIIED 173

Query: 296 A 296
           +
Sbjct: 174 S 174


>gi|289769956|ref|ZP_06529334.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
 gi|289700155|gb|EFD67584.1| D-alanine-D-alanine ligase B [Streptomyces lividans TK24]
          Length = 326

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 74/290 (25%), Positives = 134/290 (46%), Gaps = 14/290 (4%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            S  A A ALE+ G +   ++       ++  ++ D+A + LHG +GEDG +Q +L+ L 
Sbjct: 17  RSVTALAEALEEIGARWKVLNPCEPD-FIMELVEYDVALSNLHGPYGEDGRLQGLLDYLR 75

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +PY  SG+ ASA++ DK+  K+V+ + GVP     + +   +          ++KP  GG
Sbjct: 76  VPYCGSGVGASAVAADKILCKRVMLTLGVPTPGWHVWSGGPVAWYGRT---IMVKPPFGG 132

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           SS+G+ +++    +P  L  ++       +LIE+YV G  +T G++              
Sbjct: 133 SSVGMSLVRDPADLPGALADAAGDGC-APVLIEEYVTGTPMTVGLLELPGGSAVVFPPLT 191

Query: 197 SDFYS---YELKYSSLNSTHVLPAKIPLDIYK----EVQRLAFLAHQAIGCRGISRSDFL 249
           ++      Y+                  ++      ++   A      +G RG +R DF+
Sbjct: 192 TEATEADFYDADTKLDVDLRGAVTVRAANLAPAALDKITAHARTLWNGLGLRGSARIDFI 251

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA-SC 298
                 + + LE+N  PGM+  S F   AA  G +  E++L M+ +A +C
Sbjct: 252 LTE-DNEPYVLEVNTTPGMSRDSNFAVGAAMVGLTHTEVVLAMLHEALAC 300


>gi|217033771|ref|ZP_03439197.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
 gi|216943820|gb|EEC23260.1| hypothetical protein HP9810_7g52 [Helicobacter pylori 98-10]
          Length = 347

 Score = 90.3 bits (222), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S       L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIVLKEVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILMCNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKTLDYVLLNEKNRANALNLIGFNFPFIVKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|224368436|ref|YP_002602599.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
 gi|223691152|gb|ACN14435.1| DdlB2 [Desulfobacterium autotrophicum HRM2]
          Length = 332

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 72/297 (24%), Positives = 132/297 (44%), Gaps = 17/297 (5%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHG--NFGEDGLVQAI 71
           S+ + +A  + L+  G +  +I     +   L    + DL FN+  G    G +  + AI
Sbjct: 28  SVETIEAIETTLQGLGHETRRIGNAIRLTERLVQGERWDLVFNIAEGLHGIGREAQIPAI 87

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           L+L  IPYT S  +  A+++ K  +K ++   G+      + N           PP+ +K
Sbjct: 88  LDLYNIPYTFSDPMVMAVTLHKGMTKHIIRDAGLATADFKVANSARDAWNLPFDPPFFVK 147

Query: 132 PLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GV 181
           P+  G+ +GI    ++K    +P  + Q         +LIE+++ G E T          
Sbjct: 148 PVAEGTGMGITAKSLVKNALDLPG-VCQELVEQFHQPVLIEEFLTGREFTVGIVGTGTRA 206

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240
               ++++  I+  K + YS+E K    +    LP     D + + V+ LA  A + +GC
Sbjct: 207 QVMGTMEIIVISSKKDEVYSFENKEGWKSKVQYLPLSPGTDPLIQAVEDLALSAWKVLGC 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           R   R D   D    +  ++E+N   G+ P  S  P +  + G S+ +L+  ++E A
Sbjct: 267 RDGGRIDIRCDAA-GRPSFIEVNPLAGLRPEYSDLPIVCQFFGTSYVQLIELILESA 322


>gi|258593040|emb|CBE69351.1| putative D-alanine--D-alanine ligase A (D-alanylalanine synthetase
           A) (D-Ala-D-Ala ligase A) [NC10 bacterium 'Dutch
           sediment']
          Length = 436

 Score = 89.9 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 76/263 (28%), Positives = 124/263 (47%), Gaps = 21/263 (7%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF V+HG  GEDG +Q + EL  +PY  +G+ ASA+ MDK+ SK V    G+PV   
Sbjct: 147 IDVAFPVIHGTHGEDGTIQGLCELANLPYVGAGVAASAVGMDKIISKLVFQGAGLPVVEG 206

Query: 111 ILVNRFT---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           I V R              + ++S P V+KP   GSS+GI V            ++  ++
Sbjct: 207 IGVTRRELLEDEAAVVQALERILSYPVVVKPAVAGSSVGIGVAHDAVEALSLAKRAMRFS 266

Query: 162 H--------GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
                      ++ ++  V G         +  +   E+   +  +   +   S+  +  
Sbjct: 267 CRVLVERAVQQRIEVQCGVIGNHALTVSECEELISSGEVVGYRDKYPENKKPGSADLAPS 326

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           ++PA+IP  +  E++ +A  A ++I  RGISR DFL D  + K +  EIN  PG    S+
Sbjct: 327 IIPARIPQALSDEIRSIAAAAFKSIDSRGISRVDFLVDSAAMKPYVNEINTMPG----SL 382

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
              +   +G    EL++ +VE A
Sbjct: 383 SLTLWERSGVKPAELIVRLVELA 405



 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDA--GFKVSQIDVDRSVGLVLAHLKPDL 53
          + ++ G  S EREVS+ +       L      F+   I +      +      DL
Sbjct: 8  IGLIFGSRSVEREVSIMTAGKVYEVLLSLQDRFETLPIFLTAEGTWLTGEAVRDL 62


>gi|167947938|ref|ZP_02535012.1| D-alanine--D-alanine ligase [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 128

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 49/100 (49%), Positives = 60/100 (60%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVLMGG S+EREVSL SG A   AL         +D   ++   L+    D AF VLHG
Sbjct: 12  VAVLMGGCSAEREVSLRSGDAVFQALLRQAIDAHAVDSAENLLEQLSEGGFDRAFIVLHG 71

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
             GEDG VQ  LE + +PYT SG+L SAL MDK R+K + 
Sbjct: 72  RGGEDGTVQGALESIGLPYTGSGVLGSALGMDKYRTKALW 111


>gi|283957219|ref|ZP_06374681.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
 gi|283791291|gb|EFC30098.1| D-alanine--D-alanine ligase [Campylobacter jejuni subsp. jejuni
           1336]
          Length = 346

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 112/310 (36%), Gaps = 41/310 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
           A+L GG S E E+S+ S       + +   +    D +R    +                
Sbjct: 4   AILFGGNSYEHEISIVSA-VVLKKVINQNLEFIFCDEERRFYHIPSEKMNSKTFSTKAYK 62

Query: 46  -------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                 L+ +   N++HG  GEDG + A+ E   I +    + A
Sbjct: 63  KEKELFVKQGGFFSKGFLKENKLECECMINLIHGRDGEDGKIAALFEFYSIKFIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K  +K    S GV      ++ +     +  +S P +IKP + GSS+GI ++K 
Sbjct: 123 SVLSFNKELTKLYAKSVGVKTLDYTMLRKNQNSKE-KLSFPCIIKPARLGSSIGISIVKD 181

Query: 147 DQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           ++ +         +++    +       +     C +  +    + E    K      + 
Sbjct: 182 EKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMINDEFVFSIIEEPKKKEFLDFEQK 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             S      ++ A +  ++ ++++      +  +    + R DF       +V+  EIN 
Sbjct: 242 YLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLFKGALIRCDFFIL--DNEVYLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 NPGSLANYLF 309


>gi|317014150|gb|ADU81586.1| D-alanyl-alanine synthetase A [Helicobacter pylori Gambia94/24]
          Length = 347

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 114/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHHFYLIEELNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    + A
Sbjct: 64  KLPPLTLTRNGLLKNSFLGAKTIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV      L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELVYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKTDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|218200303|gb|EEC82730.1| hypothetical protein OsI_27428 [Oryza sativa Indica Group]
          Length = 946

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 138/381 (36%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++ GG S ER +SL+S ++    ++     V+   +D                     
Sbjct: 75  VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 135 DFKLESLAQGFQSLFDFAQHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194

Query: 87  SALSMDKMRSKQVVSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIKPLKG 135
             L+ DK  +   +++ G    P           S L   F   +    +   V+KP   
Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178
           GSS+G++V               S    D+++IE +++G                   + 
Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                      + I + +   ++Y  KY  +    +  P + P ++   +++   +  + 
Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374

Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279
           +G R  +R D  FL  P++                  V + +IN+  GM   S   + ++
Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +  ++ +         +G  G SR D   +  + ++  +E+N  PGMTP ++    A
Sbjct: 862 MSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQA 921



 Score = 42.2 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L+  GF 
Sbjct: 492 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 519


>gi|115474235|ref|NP_001060716.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|33146883|dbj|BAC79881.1| unknown protein [Oryza sativa Japonica Group]
 gi|50509294|dbj|BAD30601.1| unknown protein [Oryza sativa Japonica Group]
 gi|113612252|dbj|BAF22630.1| Os07g0691200 [Oryza sativa Japonica Group]
 gi|222637729|gb|EEE67861.1| hypothetical protein OsJ_25672 [Oryza sativa Japonica Group]
          Length = 946

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 73/381 (19%), Positives = 138/381 (36%), Gaps = 82/381 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++ GG S ER +SL+S ++    ++     V+   +D                     
Sbjct: 75  VGLVCGGPSPERGISLNSARSVLDHIQGEDLLVTCYYIDCGMNAYAISPAQLYSNTPSDF 134

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 135 DFKLESLAQGFQSLFDFAQHLAANVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKN 194

Query: 87  SALSMDKMRSKQVVSSCGVPVCP-----------SILVNRFTMDSQHLISPPYVIKPLKG 135
             L+ DK  +   +++ G    P           S L   F   +    +   V+KP   
Sbjct: 195 CLLAFDKYNASLELNAQGFLTVPNFLVEKDKLAKSKLEEWFQSINLDKENGKVVVKPTSA 254

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-----------------IELT 178
           GSS+G++V               S    D+++IE +++G                   + 
Sbjct: 255 GSSIGVVVAYGANDAAEKAEGIISEGIDDKVIIEVFLEGGTEFTAIVVDVGTANNSEPVV 314

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKY-SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                      + I + +   ++Y  KY  +    +  P + P ++   +++   +  + 
Sbjct: 315 LLPTEVELQSSSNIDIQEDTIFNYRRKYLPTRQVAYHTPPRFPSEVIDCIRQGVSILFRC 374

Query: 238 IGCRGISRSD--FLFDPLS----------------RKVFWLEINVQPGMTPVSIFPEMAA 279
           +G R  +R D  FL  P++                  V + +IN+  GM   S   + ++
Sbjct: 375 LGLRDFARIDGWFLPTPVTSLPSAENTGKFGNTKYGAVLFTDINLMTGMEQTSFLFQQSS 434

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V+ A C R
Sbjct: 435 KVGFSHSRILRTVVQHA-CSR 454



 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 13/60 (21%), Positives = 27/60 (45%)

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +  ++ +         +G  G SR D   +  + ++  +E+N  PGMTP ++    A
Sbjct: 862 MSEEALQKCKSCIETLANTLGLEGFSRIDAFVNVQNGEILLIEVNTVPGMTPSTVLIHQA 921



 Score = 42.2 bits (97), Expect = 0.091,   Method: Composition-based stats.
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK 32
           V+ GG +SER+VSL SG      L+  GF 
Sbjct: 492 VIFGGDTSERQVSLMSGTNVWLNLQ--GFD 519


>gi|307718300|ref|YP_003873832.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
 gi|306532025|gb|ADN01559.1| D-alanine-D-alanine ligase related protein [Spirochaeta thermophila
           DSM 6192]
          Length = 646

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 125/298 (41%), Gaps = 26/298 (8%)

Query: 24  SALED-AGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILELLE 76
           +AL++  G+  + +    ++   L  LK   D  FN+    F  D      V A+LE+L 
Sbjct: 343 AALKECTGYSFTYLSRHETLIQDLMRLKGKIDYVFNLCDEGFFNDPRKELHVPALLEMLG 402

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT +     A   DK   + V    GVPV  +  ++  ++  +     P ++KP  G 
Sbjct: 403 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 462

Query: 137 SSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI       S+            ++ +   +L+E+++ G +LT G++G+   D   +
Sbjct: 463 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPPDDYMVL 522

Query: 193 AVPKSDF----------YSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAI 238
            + + D+            YE K+   +        +PA +P    K +        + +
Sbjct: 523 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALQSIPAGLPEATEKSIVEWCVRLFERL 582

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR  +R D+  D      + LE+N  PG        +MA  AG  + ++L  +++ A
Sbjct: 583 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPQMLQAILKAA 639


>gi|308184522|ref|YP_003928655.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
 gi|308060442|gb|ADO02338.1| D-alanyl-alanine synthetase A [Helicobacter pylori SJM180]
          Length = 347

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 115/315 (36%), Gaps = 47/315 (14%)

Query: 2   AVLMGGISSEREVSLSSG---KACAS-------ALEDAGFKVSQID---VDRSVGLVLAH 48
            VL GG S E E+S+ S    K            L++       I+   +       +  
Sbjct: 4   CVLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDEN-HHFYLIEESNMHSKYFAQIKE 62

Query: 49  LKPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            K                         L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 63  KKLPPLMLTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 122

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      GV     IL+N     +       + P+++KP   GSSLG+ 
Sbjct: 123 ASVLSYNKYLTKLYAKDLGVKTLDYILLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 182

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFY 200
           V+K+++ +   L  +    +  ++LIE ++ G++     G         + I  P    +
Sbjct: 183 VVKEEKELNYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYIEEPNKQEF 240

Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               +     S    P       + K+++      +  +    I R DF       +V+ 
Sbjct: 241 LDFKQKYLDFSRTKAPKANLSNALEKQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYL 298

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 299 NEINPIPGSLANYLF 313


>gi|255322239|ref|ZP_05363385.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
 gi|255300612|gb|EET79883.1| D-alanine--D-alanine ligase [Campylobacter showae RM3277]
          Length = 344

 Score = 89.5 bits (220), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 68/311 (21%), Positives = 121/311 (38%), Gaps = 45/311 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDA-------GF-KVSQI---DVDRSV-------- 42
           AV+ G  S E E+S+ S  A    L++         F +   I   D+  +         
Sbjct: 4   AVIFGAKSYEHEISIVSAIALKKVLKNEPLFIFCDKFREFYLINGADMKANFFSSGKYKN 63

Query: 43  ---------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                           L    ++ D+  N++HG  GEDG + A+LE   + Y    + AS
Sbjct: 64  AKKLTLKQGGFFAGGLLGEKKIEADVFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           ALS +K  +K +    GV      +V+R        +  P ++KPL+ GSS+G+ VIK  
Sbjct: 124 ALSYNKELTKLLAQKAGVKTLNYEVVSREK---APSLPLPVILKPLRLGSSIGVSVIKDA 180

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   L  +       ++L+E +++G++        A  ++    + +     +     
Sbjct: 181 GELEYGLDVAY--EFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQ 238

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG----ISRSDFLFDPLSRKVFWLEIN 263
              S          +I  E+      + + I   G    + R DF    ++ +V+  EIN
Sbjct: 239 KYMSFSNESRAREANISAELAAKLKQSFERIYDCGFNGALIRCDFF--EVNGEVYLNEIN 296

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 297 PNPGSMANYLF 307


>gi|317180500|dbj|BAJ58286.1| D-alanyl-alanine synthetase A [Helicobacter pylori F32]
          Length = 347

 Score = 89.2 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 116/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                ++   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKETLKDRIKYFIFLDENHHFYLVEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 64  KLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS  K  +K      G+     +LVN     +       + P++IKP   GSSLG+ V
Sbjct: 124 SVLSYSKYLTKLYAKDLGIKTLDCVLVNEKNRANALDLIGFNLPFIIKPSNAGSSLGVSV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDGAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P     + + ++++      +  +    + R DF       +V+  
Sbjct: 242 DFKQKYLDFSRNKAPKANLSNTLEEQLKENFKKLYNDLFDGALIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|307637426|gb|ADN79876.1| D-alanine--D-alanine ligase [Helicobacter pylori 908]
 gi|325996016|gb|ADZ51421.1| D-alanine--D-alanine ligase [Helicobacter pylori 2018]
 gi|325997611|gb|ADZ49819.1| D-alanine--D-alanine ligase [Helicobacter pylori 2017]
          Length = 356

 Score = 89.2 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 114/315 (36%), Gaps = 47/315 (14%)

Query: 2   AVLMGGISSEREVSLSSG---KACAS-------ALEDAGFKVSQID---VDRSVGLVLAH 48
            VL GG S E E+S+ S    K            L++       I+   +       +  
Sbjct: 13  CVLFGGASFEHEISIVSAIVLKGVLKDRIKYFIFLDEN-HHFYLIEESNMHSKYFAQIKE 71

Query: 49  LKPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
            K                         L  N++HG  GEDG + ++LE   I +    I 
Sbjct: 72  KKLPPLILTRNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIE 131

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGII 142
           AS LS +K  +K      G+      L+N     +       + P+++KP   GSSLG+ 
Sbjct: 132 ASVLSYNKYLTKLYAKDLGIKALDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVN 191

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFY 200
           V+K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    +
Sbjct: 192 VVKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEF 249

Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               +     S    P       + ++++      +  +    I R DF       +V+ 
Sbjct: 250 LDFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYL 307

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 308 NEINPIPGSLANYLF 322


>gi|15611742|ref|NP_223393.1| D-alanyl-alanine synthetase A [Helicobacter pylori J99]
 gi|6919861|sp|Q9ZLA5|DDL_HELPJ RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|4155237|gb|AAD06259.1| D-ALANINE--D-ALANINE LIGASE [Helicobacter pylori J99]
          Length = 347

 Score = 89.2 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 65/314 (20%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 4   CVLFGGASFEHEISIVSAIALKGVLKDRIKYFIFLDENHYFYLIEESNMHSKYFAQIKEK 63

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    + A
Sbjct: 64  KLPPLILTHNGLLKNSFLGAKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRVEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV     +L+N     +       + P+++KP   GSSLG+ V
Sbjct: 124 SVLSYNKYLTKLYAKDLGVKALDYVLLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVNV 183

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 184 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKGFCFSYVEEPNKQEFL 241

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S    P       + ++++      +  +    I R DF       +V+  
Sbjct: 242 DFKQKYLDFSRTKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 299

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 300 EINPIPGSLANYLF 313


>gi|298378694|ref|ZP_06988578.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
 gi|298281028|gb|EFI22529.1| D-alanine-D-alanine ligase [Escherichia coli FVEC1302]
          Length = 96

 Score = 89.2 bits (219), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 56/91 (61%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          +AVL+GG S+EREVSL+SG A  + L + G     +D        L  +     F  LHG
Sbjct: 5  IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQLKSMGFQKVFIALHG 64

Query: 61 NFGEDGLVQAILELLEIPYTHSGILASALSM 91
            GEDG +Q +LEL+ +PYT SG++ASALSM
Sbjct: 65 RGGEDGTLQGMLELMGLPYTGSGVMASALSM 95


>gi|254779285|ref|YP_003057390.1| D-alanyl-alanine synthetase A [Helicobacter pylori B38]
 gi|254001196|emb|CAX29162.1| D-alanine--D-alanine ligase (D-alanylalanine synthetase)
           (D-Ala-D-Ala ligase) [Helicobacter pylori B38]
          Length = 349

 Score = 89.2 bits (219), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 66/314 (21%), Positives = 115/314 (36%), Gaps = 45/314 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALED---------AGFKVSQID---VDRSVGLVLAHL 49
            VL GG S E E+S+ S  A    L+D                I+   +       +   
Sbjct: 6   CVLFGGASFEHEISVVSAIALKGVLKDRIKYFIFLDENHHFYLIEESNMHSKYFAQIKEK 65

Query: 50  KPD-----------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           K                         L  N++HG  GEDG + ++LE   I +    I A
Sbjct: 66  KLPPLILTHNGLLKNSFLGTKIIELPLVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEA 125

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIV 143
           S LS +K  +K      GV      L+N     +       + P+++KP   GSSLG+ V
Sbjct: 126 SVLSYNKYLTKLYAKDLGVKTLDYALLNEKNRANALDLIGFNFPFIVKPSNAGSSLGVSV 185

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT--CGVMGDASLDVTEIAVPKSDFYS 201
           +K+++ +   L  +    +  ++LIE ++ G++     G         + +  P    + 
Sbjct: 186 VKEEKELIYALDSAF--EYSKEVLIEPFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFL 243

Query: 202 YELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +     S +  P       + ++++      +  +    I R DF       +V+  
Sbjct: 244 DFKQKYLDFSRNKAPKANLSNALEEQLKENFKKLYNDLFDGAIIRCDFFVIE--NEVYLN 301

Query: 261 EINVQPGMTPVSIF 274
           EIN  PG     +F
Sbjct: 302 EINPIPGSLANYLF 315


>gi|292558656|gb|ADE31657.1| D-alanine--D-alanine ligase [Streptococcus suis GZ1]
          Length = 341

 Score = 88.8 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 78/285 (27%), Positives = 129/285 (45%), Gaps = 40/285 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV----------------- 45
           +L GG S+EREVS+ S ++   A+    F V    + ++   +                 
Sbjct: 26  LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFIKTQEFSQTPSADEKLMT 85

Query: 46  ------LAHLKPD-------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    ++P        + F VLHG  GEDG +Q  LE+L +PY  + IL+S+++MD
Sbjct: 86  NATIVEEQKIRPSDIYEEKAVVFPVLHGPMGEDGSIQGFLEVLRMPYVGTNILSSSVAMD 145

Query: 93  KMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           K+ +K+V+ S G+   P +       ++    + +  ++ P  +KP   GSS+GI   + 
Sbjct: 146 KITTKRVLESAGISQVPYVAVIEGENIDDKIAEIEGKLTYPVFVKPANMGSSVGISKAED 205

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--VMGDASLDVTEIAVPKSDFYSYEL 204
              +   L  +    +  ++L+EQ V+  E+  G     D    +    V    FY Y+ 
Sbjct: 206 LAGLRKALDLAF--KYDSRVLVEQGVNAREIEVGLLGNADVKTTLPGEVVKDVAFYDYDA 263

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           KY     T  +PAKI   I   ++  A  A +AIG  G+SR DF 
Sbjct: 264 KYIDNKITMEIPAKIDESIMDIMRDNAAKAFRAIGGCGLSRCDFF 308


>gi|20806600|ref|NP_621771.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme
           [Thermoanaerobacter tengcongensis MB4]
 gi|20515044|gb|AAM23375.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Thermoanaerobacter tengcongensis MB4]
          Length = 332

 Score = 88.8 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 111/292 (38%), Gaps = 27/292 (9%)

Query: 23  ASALEDAGFKVSQIDVDRSVGL---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
             AL++AGF    I+          V+   + D+ FN               LEL  IPY
Sbjct: 36  YEALKEAGFDAVLIEWKDDPIKTYEVIQKEEVDIIFNA------SSLKEIEFLELFNIPY 89

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSS 138
             SGI  +  + DK   K +V++ G+P    ++            +  P  +KP+ G  S
Sbjct: 90  VGSGIDLA--ATDKRMRKDIVAAHGLPTPKYVVAYSANEIPSVDHLRFPLFVKPIMGRGS 147

Query: 139 LGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAV 194
            GI              ++   +   G   LIE++++G E+T G++G  +  V       
Sbjct: 148 AGIDEENIVYDKSRLPKVVSKITEKIGQPALIEEFIEGREVTVGIIGYRNPIVLPLLEIG 207

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
             +   +        N     P ++P +I K ++  A    + +  R  +R D +     
Sbjct: 208 YNNVKTNTYEHKMFDNEIIKCPMEVPEEIEKRIKDTALRIFKVLNARDYARIDMIL-GKD 266

Query: 255 RKVFWLEINVQPGMTP----------VSIFPEMAAYAGYSFRELLLWMVEDA 296
              ++LE+N   G+T                 MA  AG + +E +  ++E A
Sbjct: 267 NVPYFLELNTYAGLTTAVERGEKHVHHGYMGYMAKAAGMTRKEFIGKILESA 318


>gi|315185431|gb|EFU19202.1| D-alanine--D-alanine ligase [Spirochaeta thermophila DSM 6578]
          Length = 648

 Score = 88.8 bits (218), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 69/298 (23%), Positives = 126/298 (42%), Gaps = 26/298 (8%)

Query: 24  SALED-AGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDG----LVQAILELLE 76
           +AL++  G+  + +    ++   L  LK   D  FN+    F  D      V A+LE+L 
Sbjct: 344 AALKECTGYSFTYLSRHETLIQDLMRLKGKVDYVFNLCDEGFFNDPRKELHVPALLEMLG 403

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPYT +     A   DK   + V    GVPV  +  ++  ++  +     P ++KP  G 
Sbjct: 404 IPYTGATPQGLAFCYDKSLVRGVAKEMGVPVPRAFFIDPTSIVFEVPFGFPMIVKPNLGD 463

Query: 137 SSLGIIVIKKDQSIPLDLLQ----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
           SS GI       S+            ++ +   +L+E+++ G +LT G++G+ + D   +
Sbjct: 464 SSFGITQKSVVWSLDELSACISEIRDTFGYEKPVLVEEFLTGKDLTVGIIGNPTDDYMVL 523

Query: 193 AVPKSDF----------YSYELKYSSLNSTHV----LPAKIPLDIYKEVQRLAFLAHQAI 238
            + + D+            YE K+   +        +PA +P +  K +        + +
Sbjct: 524 PIVEEDYSALPPELPRICGYEAKWLPDSPYWKALRSIPAGLPEETEKSIVEWCVRLFERL 583

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            CR  +R D+  D      + LE+N  PG        +MA  AG  +  +L  +++ A
Sbjct: 584 ECRDYARFDWRCDA-DGNPYLLEVNPNPGWCWDGHLAKMARLAGMEYPRMLEAILKAA 640


>gi|224419173|ref|ZP_03657179.1| D-alanyl-alanine synthetase A [Helicobacter canadensis MIT 98-5491]
 gi|253828106|ref|ZP_04870991.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313142679|ref|ZP_07804872.1| ligase [Helicobacter canadensis MIT 98-5491]
 gi|253511512|gb|EES90171.1| D-alanine--D-alanine ligase [Helicobacter canadensis MIT 98-5491]
 gi|313131710|gb|EFR49327.1| ligase [Helicobacter canadensis MIT 98-5491]
          Length = 345

 Score = 88.8 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 61/309 (19%), Positives = 112/309 (36%), Gaps = 43/309 (13%)

Query: 4   LMGGISSEREVSLSSGKACASAL-----------------------------EDAGFKVS 34
           L GG S E E+S+ S  A    L                               A  K +
Sbjct: 6   LFGGSSYEHEISIVSAIALKKLLGNVEYFIFLDDTHTFYLIPKDKMQSKFFSTKAYLKAT 65

Query: 35  QIDVDRSV-----GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +I                 L   +  N++HG  GEDG V ++L+   I Y      A  L
Sbjct: 66  RIYPKNGGFYQKTLWGEKKLPLPIVVNLIHGADGEDGRVASLLDFYGINYIGPRNPACVL 125

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           S DK  +K +   CGV      +V++ ++  +  +  P ++KP + GSS+GI V+ +++ 
Sbjct: 126 SFDKELTKMLAKECGVLSLDYQMVHKDSIP-KVTLPFPLIVKPARLGSSIGISVVYEEKE 184

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   + ++    + D+ +IE +V GI+        +   +    + +     +       
Sbjct: 185 LEYAIQEAF--EYDDKAIIEPFVSGIKEYNIAGYKSKEGMHFSFIEEPQKKEFLDFEKKY 242

Query: 210 NSTHVLPAKIPLDI----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +    +I     + +Q      +  +    + R DF       + +  EIN  
Sbjct: 243 LDFSRTESAKEAEISESLKQTLQENFTKIYGNLFDGALIRCDFFV--KENQCYLNEINPI 300

Query: 266 PGMTPVSIF 274
           PG     +F
Sbjct: 301 PGSLANYLF 309


>gi|20093140|ref|NP_619215.1| hypothetical protein MA4352 [Methanosarcina acetivorans C2A]
 gi|19918479|gb|AAM07695.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 703

 Score = 88.8 bits (218), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 70/304 (23%), Positives = 120/304 (39%), Gaps = 24/304 (7%)

Query: 16  LSSGKACASALEDAGF-KVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFGEDG----LV 68
           L +      AL +  + K + +D   ++   L     K DL  N+    F  D      V
Sbjct: 336 LETVNRMKQALSEIPYMKFTFLDRHETLLEDLKKRAGKTDLVLNLCDEGFNNDPIKELHV 395

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
            A+LE   IPYT +G    +   DK   +       +PV   +LV   +  S   +S P 
Sbjct: 396 PALLEQFNIPYTGAGPQCLSFCYDKSLVRGAAREMRIPVAKGVLVTGDSDVSSFSLSFPL 455

Query: 129 VIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGD 184
           ++KP  G SS       ++   + I   + ++          L+E+++ G +++ G++G+
Sbjct: 456 LVKPNSGDSSYGITQKSIVHSREEIFDIMKETREKIGADKPFLLEEFLPGKDISVGIIGN 515

Query: 185 ASLDVTEIAVPKSDF---------YSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAF 232
                      +              YE K+   +    +   PA +P    KE+ R   
Sbjct: 516 PPFCTVLPITEEDYSAVPEDLPRICGYEAKWLPDSPYWKIKSVPAGLPEKTEKEIVRCCL 575

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +GCR  +R D+  D    +   LE+N  PG        +MAAYA  S+  +L  +
Sbjct: 576 ALFTRLGCRDYARFDWRLDAE-GRPKLLEVNPNPGWCWDGHLAKMAAYANISYSGMLAAI 634

Query: 293 VEDA 296
           +E A
Sbjct: 635 LEAA 638


>gi|300765781|ref|ZP_07075756.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
 gi|300513475|gb|EFK40547.1| D-Ala-D-Ala ligase [Listeria monocytogenes FSL N1-017]
          Length = 310

 Score = 88.8 bits (218), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 67/304 (22%), Positives = 123/304 (40%), Gaps = 55/304 (18%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDTIKLATTESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQAEMVAEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           KP   GSS+GI      + +   + ++  ++    +        IE+           V 
Sbjct: 187 KPANLGSSVGISKATNKKELADAMTEAFLYDRRVVVEQGVVAREIEMGVLGNDTPVCSVP 246

Query: 191 EIAVPK---SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +P+   + FY Y+ KY   N+  ++P ++  +I ++++  A  A   +   G+ R+D
Sbjct: 247 GEILPEGAVATFYDYKAKYQDNNTALIIPTEVDPEILEQMKEYAVQAFLGLDASGLVRAD 306

Query: 248 FLFD 251
           F   
Sbjct: 307 FFLT 310


>gi|193214834|ref|YP_001996033.1| type 11 methyltransferase [Chloroherpeton thalassium ATCC 35110]
 gi|193088311|gb|ACF13586.1| Methyltransferase type 11 [Chloroherpeton thalassium ATCC 35110]
          Length = 656

 Score = 88.4 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 55/300 (18%), Positives = 116/300 (38%), Gaps = 25/300 (8%)

Query: 21  ACASALED-AGFKVSQIDVDRSVGLVLAHLKP--DLAFNVLHGNFGEDG----LVQAILE 73
              +AL     +K++ ++   ++   LA +KP  D  FN+    F  D      + ++LE
Sbjct: 336 QLKNALRQIDRYKITYLNNHNTLIHDLARIKPKVDFVFNLCDEGFNNDPRKELHIPSLLE 395

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           ++   YT SG    A   DK   + +    G+ V  +  +       +   + P + KP 
Sbjct: 396 IMGFRYTGSGPQCLAYCYDKSLVRGIAKEMGIAVPEAFFIRPEETSFELPFNFPVIAKPN 455

Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGI----------ELTC 179
            G SS       V    + +   + +      +   +L+E+++ G             + 
Sbjct: 456 FGDSSFGITTRSVSYTIEELVNAISEIRSKIGYEKPILVEEFLTGKDLSLGIIGNAPESY 515

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQ 236
            V+     D + +         YE K+   +       +PA+I  +  K ++    +  +
Sbjct: 516 MVLPIIEEDYSGLPESLPKICGYEAKWLPDSPYATVKSIPAQISEETKKLLEEWCVMLFE 575

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            + CR   R D+  D  +     LE+N  PG        +M+A++   + +++  ++ +A
Sbjct: 576 RLECRDYCRFDWRLDA-NGNPKLLEVNPNPGWCWDGHLAKMSAFSEIDYPKMIETILAEA 634


>gi|32477963|ref|NP_870957.1| D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|32448520|emb|CAD78035.1| probable D-alanine-D-alanine ligase [Rhodopirellula baltica SH 1]
 gi|327539377|gb|EGF25995.1| D-alanine-D-alanine ligase [Rhodopirellula baltica WH47]
          Length = 341

 Score = 88.0 bits (216), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 52/297 (17%), Positives = 107/297 (36%), Gaps = 25/297 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75
               L   G +V  + +   +  +   L + +P++ + +L    G    D  V + LEL+
Sbjct: 37  VCETLRGLGHEVLPLGIFDDLAPIRAALQNFQPNITYMLLEEFYGVVTYDFAVISYLELM 96

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-MDSQHLISPPYVIKPLK 134
           + PY+        LS DK  SK+++    +      +      +     +  P  +K   
Sbjct: 97  QQPYSGCNPRGLMLSKDKALSKKLLMYHRIATPRFAVFPNGRAVRRPKKLEFPLFVKSTI 156

Query: 135 GGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM------GDA 185
             +S       ++  D+++   +        GD +++EQY++G EL  GVM         
Sbjct: 157 EDASFGIAQASIVHNDEALAERVTFLHEKTGGD-VIVEQYIEGRELYVGVMGNTRLVTFP 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-------IYKEVQRLAFLAHQAI 238
           + ++    +P         +                          K + +L    ++A+
Sbjct: 216 AWEMDFGKMPDESARIATSRVKWDRKYQEKHDITCHAAEGLTEVQQKHIAKLCKRVYRAL 275

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              G +R D      + +V+ +E N  P +     F E A  AG  +  L+  ++  
Sbjct: 276 HMSGYARMDLRMTA-TGEVYVIEANANPNIEYGEDFAESAEAAGIPYESLIQRILNL 331


>gi|223040206|ref|ZP_03610485.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
 gi|222878567|gb|EEF13669.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter rectus
           RM3267]
          Length = 344

 Score = 88.0 bits (216), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 69/311 (22%), Positives = 120/311 (38%), Gaps = 45/311 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDA-------GF-KVSQI---DVDRSV-------- 42
           AV+ G  S E E+S+ S  A    L++         F +   I   D+  +         
Sbjct: 4   AVIFGAKSYEHEISVVSAIALKKVLKNEPLFIFCDKFREFYLINGADMKANFFSSGKYKN 63

Query: 43  ---------------GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                           L    ++ D   N++HG  GEDG + A+LE   + Y    + AS
Sbjct: 64  AKKLTLKQGGFFAGGLLGEKKIEADAFINLVHGMDGEDGKIAALLEFYGLSYIGPRVEAS 123

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           ALS +K  +K +    GV      +V+R        +  P ++KPL+ GSS+G+ VIK  
Sbjct: 124 ALSYNKELTKLLAQKAGVNTLNYEVVSRAK---APSLPLPVILKPLRLGSSIGVSVIKDA 180

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   L  +       ++L+E +++G++        A  ++    + +     +     
Sbjct: 181 SELEYGLDVAY--EFDKEILVEPFIEGVKEYNLAGCKADGEIKFSIIEEPKKKEFLDYEQ 238

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG----ISRSDFLFDPLSRKVFWLEIN 263
              S          DI  E+      + + I   G    + R DF    ++ +V+  EIN
Sbjct: 239 KYMSFSNESRAREADIGAELAAKLKQSFERIYNCGFDGALIRCDFF--EVNGEVYLNEIN 296

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 297 PNPGSMANYLF 307


>gi|238497161|ref|XP_002379816.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
 gi|317146742|ref|XP_001821628.2| D-alanine--D-alanine ligase [Aspergillus oryzae RIB40]
 gi|220694696|gb|EED51040.1| D-alanine--D-alanine ligase, putative [Aspergillus flavus NRRL3357]
          Length = 360

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 32/307 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHG--NFGEDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G      +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R          +  +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
            KP+   +S GI  + K    + +   +    +     ++L+E+++DG E T  V+G   
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220

Query: 187 LDVTEIAVPKSDFYSY----------------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                     + +                   +      +    + A     + KE+  +
Sbjct: 221 RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAEI 280

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
              A+QA+GC+   R D   D        +E+N   G+ P  S+F  +A   G  +++++
Sbjct: 281 GLSAYQALGCKDGGRVDIRMDGA--VPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDII 338

Query: 290 LWMVEDA 296
             +V++A
Sbjct: 339 AEIVDNA 345


>gi|83769491|dbj|BAE59626.1| unnamed protein product [Aspergillus oryzae]
          Length = 359

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 66/307 (21%), Positives = 125/307 (40%), Gaps = 32/307 (10%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLA---HLKPDLAFNVLHG--NFGEDGLVQAILEL 74
              ASALE  G +V  +   +++   L+   H + DL FN   G      +  V A+LE 
Sbjct: 41  NGVASALESLGHRVVHVPGIKTLVKHLSAEHHKQWDLVFNYSEGVFGSARESQVPALLEA 100

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR-----FTMDSQHLISPPYV 129
            +IP+T S     A  +DK ++K ++    +P  P ++V R          +  +  P  
Sbjct: 101 YQIPFTFSDAATLATGIDKGKTKMLLEHYRIPTSPFVIVPRSGEAVDYAALEDQLPYPLF 160

Query: 130 IKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
            KP+   +S GI  + K    + +   +    +     ++L+E+++DG E T  V+G   
Sbjct: 161 AKPIAASTSNGISPLNKILRKEDLQEVVEDLRAEFKDQEILLEKFLDGREFTVAVLGSGD 220

Query: 187 LDVTEIAVPKSDFYSY----------------ELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                     + +                   +      +    + A     + KE+  +
Sbjct: 221 RARVLGVSEVTWYNPEGRKSDDLSVDFATSFSKAGRGVGHDMGHVHADPADPLVKEIAEI 280

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
              A+QA+GC+   R D   D        +E+N   G+ P  S+F  +A   G  +++++
Sbjct: 281 GLSAYQALGCKDGGRVDIRMDGA--VPCVIEVNPIFGLRPDHSLFTWIAKNNGMEYQDII 338

Query: 290 LWMVEDA 296
             +V++A
Sbjct: 339 AEIVDNA 345


>gi|213854615|ref|ZP_03382855.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
 gi|289806172|ref|ZP_06536801.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. AG3]
          Length = 69

 Score = 87.6 bits (215), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D        +V   EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 2   GMARVDVFLTA-DNEVVINEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 55


>gi|27382562|ref|NP_774091.1| hypothetical protein blr7451 [Bradyrhizobium japonicum USDA 110]
 gi|27355734|dbj|BAC52716.1| blr7451 [Bradyrhizobium japonicum USDA 110]
          Length = 348

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 62/295 (21%), Positives = 106/295 (35%), Gaps = 24/295 (8%)

Query: 22  CASALEDAGFKVSQI---DVDRSVGLVLAHLKPDLAFNVL---HGNFGEDGLVQAILELL 75
             S L  AG +V  +   D  + V   +   KP + F +L   H N   D  + + LEL+
Sbjct: 41  VVSTLRAAGHEVRALGAQDEIKPVREAIEEFKPHVVFTLLEEFHNNVAYDQHIASYLELM 100

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLK 134
           ++PYT        L+  K  SK +V    +      +   R  +     ++ P ++K L 
Sbjct: 101 KVPYTGCNPRGLILARGKDLSKTLVHHRRIAAPAFAVFPMRRKVKRPTRLALPLIVKSLN 160

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              S GI             + +           + EQ+++G EL  GV+G+  L V  I
Sbjct: 161 MDGSFGISQASIVDTDEKLAERVAFIHERVESAAIAEQFIEGRELYVGVLGNNRLRVLPI 220

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIP--------------LDIYKEVQRLAFLAHQAI 238
              K                                       ++   +QR A   ++A+
Sbjct: 221 WELKFGSMGGRRSRHIATEKAKHDTDYQEKVGIVDGPAKDLAPEVTARIQRAAKRIYRAL 280

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G +R DF         +++E N  P +     F   A +AG  + +LL  ++
Sbjct: 281 GLDGYARIDFRL-AADGTPYFIEANPNPEIAKSQEFATAAQHAGLKYPDLLQRIL 334


>gi|317154408|ref|YP_004122456.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
 gi|316944659|gb|ADU63710.1| D-alanine--D-alanine ligase [Desulfovibrio aespoeensis Aspo-2]
          Length = 334

 Score = 87.2 bits (214), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 65/292 (22%), Positives = 109/292 (37%), Gaps = 12/292 (4%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFG--EDGLVQAILELLE 76
                 L   G  V +I    ++   LA   + D+ FN+  G  G   +  V A+L+   
Sbjct: 33  AGIERVLTGLGHAVDRIGNISALVARLAAGDRWDMVFNIAEGLHGLGREAQVPALLDAWS 92

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPY+ SG    AL++ K  +  VV S GV      +V R        +  P  +KP+  G
Sbjct: 93  IPYSFSGPELMALTLHKGWTNAVVRSLGVATADFAVVTRIEDVDSMSLPFPLFVKPVAEG 152

Query: 137 SSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           +S GI      +      ++            L+E Y+ G E T G++G          +
Sbjct: 153 TSKGITERSLVRDPAALREVCADLLTTFRQPALVETYLPGREFTVGLLGSGDESRVAGVI 212

Query: 195 PKS-----DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
                   D  +Y  +     +  V    +  ++      LA  A + +GC    R D  
Sbjct: 213 EVRAVGKGDATAYTYENKQDWTRRVAYELVDDEVAMAAASLALKAWRGLGCLDAGRIDVR 272

Query: 250 FDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                    ++E+N  PG+ P  S  P +    G S+  L+  +   A+  +
Sbjct: 273 L-GADGAPRFIEVNPLPGLNPESSDLPILWRLGGKSYDALIREIFHSAARRK 323


>gi|115379297|ref|ZP_01466409.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821036|ref|YP_003953394.1| d-ala d-ala ligase family [Stigmatella aurantiaca DW4/3-1]
 gi|115363707|gb|EAU62830.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394108|gb|ADO71567.1| D-ala D-ala ligase family [Stigmatella aurantiaca DW4/3-1]
          Length = 344

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 60/296 (20%), Positives = 119/296 (40%), Gaps = 21/296 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK---PDLAFNVLH---GNFGEDGLVQAILEL 74
               +L   G + S I V   V  +L  ++    DL FN+      ++  +  V A++E+
Sbjct: 26  QVGESLRKLGHQPSFIAVSDRVFDILQEIERSGCDLVFNLCETFAEDYRLEVNVAALMEM 85

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             + +T SG     L+ DK+ +KQ++    +P       +  T+++   ++ P ++KP +
Sbjct: 86  ARVKFTGSGTAGLLLAQDKILTKQLLEYHEIPTPDFATFDGSTVETNGDLAFPLIVKPAR 145

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             +S+GI             D ++       D+ L E+++ G E+  G++G   L     
Sbjct: 146 SDASIGIGGKSLVNSWEQLTDRVREIRKELRDEALAEEFIQGREVYVGIIGTKELPEILP 205

Query: 193 AVPKSD-FYSYELKYSSLNSTHVLP-----------AKIPLDIYKEVQRLAFLAHQAIGC 240
            V      +  +    S       P             I   + + V+R A LA++A+  
Sbjct: 206 IVELDFGNWDKDKPTISDREVKFGPETEGSPKLVIARDISPVLRQRVERAALLAYRALKL 265

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +  +R D          + LE+N  P +         A   G S+ +L+  +++ A
Sbjct: 266 QDYARIDLRISEQDD-PYILEVNPNPYLEDKGELALAAREKGLSYTQLIGRILDSA 320


>gi|302341652|ref|YP_003806181.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
 gi|301638265|gb|ADK83587.1| D-alanine--D-alanine ligase domain protein [Desulfarculus baarsii
           DSM 2075]
          Length = 340

 Score = 87.2 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 51/305 (16%), Positives = 95/305 (31%), Gaps = 24/305 (7%)

Query: 19  GKACASALEDAGFKV--SQIDVD-RSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAIL 72
                +AL   G +        +       L  L+PD+ FN++    G      L   +L
Sbjct: 25  ASQVLAALGRLGHRAQGLAFGPEVDQTRQALEELRPDVVFNLVETPLGMARMIHLAPLLL 84

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY--VI 130
           E L + YT +G     L+  K+ +K+ +    +P           +    L       V 
Sbjct: 85  ERLRLRYTGAGARGMLLTSQKLLAKKAMRESNLPTPDWCGPRDDGLPFSPLRRYIVKSVW 144

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC----------- 179
           +    G     I+    ++     +       G     E Y+DG E              
Sbjct: 145 EHGSVGLDDHSIIKPLGRAAMRAAIAQRGKALGGDCFAEAYIDGREFNIAILAGSRGPEV 204

Query: 180 ----GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +  +         V     +  +    +             ++   ++ ++    
Sbjct: 205 LPPAEITFEGFQPGKPHIVGYRAKWVEDSHEYNHTPRRFDFEPRDAELLARLKAMSLRCW 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +  G RG +R DF  D    + F LE+N  P +   + F   A  AG     ++  ++  
Sbjct: 265 RLFGLRGWARVDFRVDRK-GRPFILEVNANPCLADDAGFMAAARRAGLDQTIVVWRILGS 323

Query: 296 ASCLR 300
           AS  R
Sbjct: 324 ASRGR 328


>gi|325972390|ref|YP_004248581.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027628|gb|ADY14387.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 314

 Score = 86.8 bits (213), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 59/289 (20%), Positives = 103/289 (35%), Gaps = 18/289 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP-----DLAFNVLHGNFGED--GLVQAIL 72
           KA   AL   G  V       S+ L+L   +      DL FN++          LV  + 
Sbjct: 26  KAVKKALLRLGHSVEV--AAFSLNLILTARRIEKSGCDLVFNLVENLSSSRLLHLVPLVC 83

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--NRFTMDSQHLISPPYVI 130
           + L +PY+       +++ DK+ +K+ +   G+P  P               L+  P   
Sbjct: 84  QTLSVPYSGGSAYTLSVTGDKLVAKRQLGLAGLPTPPWFEDVAECSDFLQVPLMLKPVAQ 143

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIEL-TCGVMGD 184
           +   G +   +        + L L +        +  G +  +     G  L  C +   
Sbjct: 144 EASVGITDASVRTFSDKAQLSLALSEHPDLFAERYIDGREFNLSILPSGRVLPVCEMRFV 203

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    V     +  E           + A     + +E++RLA   +   G  G +
Sbjct: 204 DYPKDKVKIVGYEAKWQQESFAYQHTQRSYVFAPEQRVLVEELKRLAKEVYTLFGSSGYA 263

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           R DF  D    + F LE+N  P +T  S F   A+ AG S+ E++  ++
Sbjct: 264 RVDFRVDEQ-NRPFILEMNSNPCITADSGFIAAASEAGMSYTEVIEQLL 311


>gi|326391834|ref|ZP_08213349.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
 gi|325992119|gb|EGD50596.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus JW 200]
          Length = 325

 Score = 86.8 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 106/290 (36%), Gaps = 27/290 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN           ++ +  L      +
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140
            G     ++ DK   K +V+S G+P    ++            +  P   KP+ G  S G
Sbjct: 90  VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAQNPQEIPSVDHLKFPLFAKPISGRGSAG 149

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196
           I              ++   +   G   LIE++++G E+T G++G     V         
Sbjct: 150 IDEENIIYDKDKLPQVVSKITDKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +   +        N     P ++  ++ ++++  A   ++ +  +  +R D +       
Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268

Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296
            ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIRKIIESA 318


>gi|300088095|ref|YP_003758617.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
 gi|299527828|gb|ADJ26296.1| D-alanine--D-alanine ligase [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 336

 Score = 86.5 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 68/297 (22%), Positives = 124/297 (41%), Gaps = 20/297 (6%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN---FGEDGLVQAILELLEIP 78
             +A+  AG    ++   R     +     D  FN+  G       +  + A+LE+L IP
Sbjct: 36  IEAAVSGAGHTPIRLGGGREFLRQVLDNPVDFVFNIAEGRGTGRAREAQIPAVLEMLGIP 95

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135
           Y+ +     ++++DK  +K++    GV     +++N            +  P  IKP   
Sbjct: 96  YSGADPQTLSMALDKPLTKRLADFAGVSTPAWLVLNDTANLAVADWASLHFPVFIKPAFE 155

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           GSS GI +     S       +          +L+E+++DG E+TCG++G+       + 
Sbjct: 156 GSSKGIRLNSLAASPAAAAAVAGRLLGDYRQPVLVEEFIDGDEITCGLIGNTGQADNPMV 215

Query: 194 VPKSDFYSYELKYSSL----------NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +P                           +  PA++P  + +E+ R A      + CR  
Sbjct: 216 LPLGILPHRADGPFIYSLEVKRDYRNRVEYQFPARLPAPVLEELTRQAVRVFDTLNCRDF 275

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +R+DF  D    + ++LEIN  PG++  S    +A   G+S  EL+  ++ DA+  R
Sbjct: 276 ARADFRIDRR-GRPWFLEINPLPGLSLDSDLYIIARGLGWSHAELIQAVL-DAALNR 330


>gi|327334538|gb|EGE76249.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 178

 Score = 86.5 bits (212), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 40/146 (27%), Positives = 69/146 (47%), Gaps = 10/146 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL GG+S +R++SL SG+  A AL   G +V + D+D ++   L      + F +LHG
Sbjct: 5   VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSALIETLRANDGAVVFPMLHG 64

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF---- 116
             GE+G +  +L+L+ IPY  S      +S DK  + + V++ G+     + +       
Sbjct: 65  GLGENGALLEVLQLMGIPYVGSSPATCRISFDKSIASRAVATAGIVTPQQVALPHDVFRE 124

Query: 117 ------TMDSQHLISPPYVIKPLKGG 136
                           P ++KP +G 
Sbjct: 125 LGAQTVMRSIAEKFGLPVIVKPARGA 150


>gi|158521902|ref|YP_001529772.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
 gi|158510728|gb|ABW67695.1| GCN5-related N-acetyltransferase [Desulfococcus oleovorans Hxd3]
          Length = 527

 Score = 86.5 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 98/307 (31%), Gaps = 33/307 (10%)

Query: 20  KACASALEDAGFKVSQI--DVD-RSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILE 73
           +A + AL D G++   +  D+D  ++   L  L PDL FN+   L+G      L   +LE
Sbjct: 38  EAVSGALSDLGYEPVPLACDLDLEALRRDLVSLCPDLVFNLVESLNGQGRLIHLAPILLE 97

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----------LVNRFTMDSQH 122
            + IPYT S       + +K  +K  +S  GV     I            VN        
Sbjct: 98  AMGIPYTGSSAYVIYRTSNKTAAKDHMSQWGVATPSWIGPASLLRIQRTRVNPAERLPNQ 157

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
                 V +    G     +V        L+ L+  S   G     E Y+ G E    ++
Sbjct: 158 SWIIKSVWEHASFGLDENAVVCPDTLGDILNTLKQRSPALGGDCFAEHYIPGREFNVALI 217

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF---------- 232
            +A                   K + +             +                   
Sbjct: 218 EEAGKPRVLPVAEIRFENYEGEKPAIVCYRAKWEPGSFECLNTVRSFEFPDSDGPLLEGV 277

Query: 233 -----LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
                        +G +R DF  D      + LE+N  P ++P + F      AG S+ +
Sbjct: 278 TSIARHCWDLFHLKGYARVDFRVDDCGN-PWVLEVNANPCLSPDAGFAAAMEQAGISYVQ 336

Query: 288 LLLWMVE 294
            +  +V 
Sbjct: 337 AIDAIVR 343


>gi|313835191|gb|EFS72905.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA2]
 gi|314929163|gb|EFS92994.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL044PA1]
 gi|314970887|gb|EFT14985.1| D-alanine--D-alanine ligase [Propionibacterium acnes HL037PA3]
 gi|328905772|gb|EGG25548.1| D-alanine--D-alanine ligase B [Propionibacterium sp. P08]
          Length = 255

 Score = 86.1 bits (211), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 63/252 (25%), Positives = 112/252 (44%), Gaps = 16/252 (6%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +LHG  GE+G +  +L+L+ IPY  SG  A  +S DK  + +++++ GV     + +   
Sbjct: 1   MLHGGLGENGALLEVLQLMGIPYVGSGPAACRISYDKSIASRIMTAVGVATPQQVALPHD 60

Query: 117 T----------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                               P ++KP +GGSSLG+  +    ++P  +  +    + D +
Sbjct: 61  IFRELGTRPVIHSITKKFGLPIIVKPARGGSSLGVTRVDDIDALPQAIANAY--AYDDMV 118

Query: 167 LIEQYVDGIELTCGVMGDASLDVT---EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           +IE+++ G EL  G++  +            P    Y Y   Y+   +    PA+I  ++
Sbjct: 119 VIEEFIVGTELAIGMITTSEGTQVLPAVEVRPVGGVYDYSAMYTGGETRLTAPAEITDEV 178

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +    +A +    +   GISR D + D  S +  +LE    PGMT  S+ P     A  
Sbjct: 179 AQAATEMARVVQGELDFFGISRVDAIVDG-SGRPVFLEAGAAPGMTATSLVPVAMKAADL 237

Query: 284 SFRELLLWMVED 295
              E+   +V+D
Sbjct: 238 DLGEVCSRLVDD 249


>gi|297543611|ref|YP_003675913.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
 gi|296841386|gb|ADH59902.1| D-alanine--D-alanine ligase [Thermoanaerobacter mathranii subsp.
           mathranii str. A3]
          Length = 325

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 107/290 (36%), Gaps = 27/290 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN           ++ +  L      +
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKGGSSLG 140
            G     ++ DK   K +V+  G+P    ++            +  P  +KP+ G  S G
Sbjct: 90  VGSGLDLVATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196
           I              +++  +   G   LIE++++G E+T G++G     V         
Sbjct: 150 IDEENIVYDKDKLPQVVRKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +   +        N     P ++  ++ ++++  A   ++ +  +  +R D +       
Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268

Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296
            ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|290473195|ref|YP_003466060.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
 gi|289172493|emb|CBJ79260.1| putative D-alanine--D-alanine ligase [Xenorhabdus bovienii SS-2004]
          Length = 365

 Score = 85.7 bits (210), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 70/332 (21%), Positives = 126/332 (37%), Gaps = 43/332 (12%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFK-----VSQIDVDRSVG------------LV 45
           ++ GGIS E   S+SS      +  +  F      +   D D SV               
Sbjct: 16  IIFGGISPEHPASVSSFDNLIKSFRELNFDRNLNSIYFFDKDGSVLYNAYTPYISPYDFT 75

Query: 46  LAHLKPDLA-------------FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            +  K DL               N+LHGN GEDG +Q + +  +I  T   +L S+LSM 
Sbjct: 76  HSGDKIDLYTAIKRMSKQSEFHINLLHGNLGEDGHIQGVAKYFKIKGTFGSVLPSSLSMS 135

Query: 93  KMRSKQVVS--------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           K      ++           + +    L   F++ S +      VIKP   G+SL     
Sbjct: 136 KYHMSHYINSLLPSLRSPKTLLLTEGNLEKAFSLISDNFPEEKIVIKPNSLGASLFTNKY 195

Query: 145 KKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
              ++    +L +  + + +    L++ ++ G E + G +      +    V       +
Sbjct: 196 VNLENEKKSILDNLKNIFEYDRFALVQAFIKGKEYSVGCIRIEGKAIALNVVEIITKNGF 255

Query: 203 --ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
               +   +N    +      +I + ++ L+    ++ G   + R DF+      ++++L
Sbjct: 256 FGHDEKHRINKAEEILLIQDSEITRTLKDLSIKIFESTGYEFMCRFDFIVTESE-EIYFL 314

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           E N  PGM   SIFP+M      S   L + +
Sbjct: 315 ESNPIPGMMKNSIFPKMLKGHKLSIPGLFIHL 346


>gi|303273608|ref|XP_003056164.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226462248|gb|EEH59540.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 918

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 77/397 (19%), Positives = 137/397 (34%), Gaps = 99/397 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDR------------------SV 42
           +AVL GG S+ER VSL+S ++    L  +GF V    +D+                    
Sbjct: 32  VAVLCGGPSAERGVSLNSARSILDNLHGSGFTVDCYYIDQGLRAFPINARQIYCNTPSDF 91

Query: 43  GLVLAHLKPD-----------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
              L   + +                 +AF  LHG FGEDG++Q  LE   +P+  +  +
Sbjct: 92  DFKLRGKRREGIRDPVALASRLRAQGAIAFPALHGAFGEDGVLQNALEEAGVPFVGTDAM 151

Query: 86  ASALSMDKMRSKQV--------------VSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
            +  + DK    +                 S  +    ++L    T +         V+K
Sbjct: 152 HACRAFDKFTCSRTLAAEGFPTLSMTLLEPSSNMDYHATLLRWFATCNLDPEFDY-VVVK 210

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVT 190
           P +GGSS+G+ + +          +  +     ++++E+Y   G+E T  V+G  +  V 
Sbjct: 211 PARGGSSIGVSIARGVVQASDLASKLFTSGTDSRVVVERYAGSGVEFTITVLGTTNEPVP 270

Query: 191 EIAV-------------------------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            I                             + F        +++  +  PA+       
Sbjct: 271 LIPTEIEILADVEKGLKTSRKVGPAARLEQFNFFDFRRKYLPTMHVVYHTPARFGTGAID 330

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPL----------------------SRKVFWLEIN 263
           +++R A    + +G R  +R D  F P                            + ++N
Sbjct: 331 KIRRNAASIFKLLGLRDYARLDGFFMPNGDVAVQWCKEELVLGDSESLTTDGVPVFTDVN 390

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           V  GM   S   + AA  G +   +L  ++  A C R
Sbjct: 391 VVCGMEQSSFLFQQAAEIGMTHSAVLRHVLCSA-CHR 426



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 12/47 (25%), Positives = 19/47 (40%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            A+   G +R D      +  V  +E N  PG+TP ++    A    
Sbjct: 852 NALDIEGFARIDLFLHVDTGDVMIVEANTVPGLTPSTVLFHQALATN 898



 Score = 41.0 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQI 36
           VL GG +SER+VSL SG      L +   + V  +
Sbjct: 465 VLFGGGTSERQVSLMSGTNVWLRLREYPEYDVEPL 499


>gi|289577322|ref|YP_003475949.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
 gi|289527035|gb|ADD01387.1| D-alanine--D-alanine ligase [Thermoanaerobacter italicus Ab9]
          Length = 325

 Score = 85.7 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 106/290 (36%), Gaps = 27/290 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN           ++ +  L      +
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKGGSSLG 140
            G     ++ DK   K +V+  G+P    ++            +  P  +KP+ G  S G
Sbjct: 90  VGSGLDLVATDKRMRKDIVAFHGLPTPKYVVAKNSQEIPPVGHLRFPLFVKPISGRGSAG 149

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196
           I              ++   +   G   LIE++++G E+T G++G     V         
Sbjct: 150 IDEENIVYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +   +        N     P ++  ++ ++++  A   ++ +  +  +R D +       
Sbjct: 210 NVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268

Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296
            ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|171318067|ref|ZP_02907237.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171096746|gb|EDT41630.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 336

 Score = 85.3 bits (209), Expect = 9e-15,   Method: Composition-based stats.
 Identities = 76/305 (24%), Positives = 132/305 (43%), Gaps = 12/305 (3%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            +L GG SSE   S+++  A     +      + I+ D    L     K D   N+ +G 
Sbjct: 21  GILAGGYSSESHGSITNAHALLPYFQRVCQSAAIIEYDGKPSLATRLAKCDFVLNICYGV 80

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTM 118
            GEDG +Q ++  LEIPY+ S +LASA+ MDK   K +V + G       LV   +    
Sbjct: 81  GGEDGQIQGLMSSLEIPYSGSPVLASAIGMDKNVFKAMVRNWGFATPNGRLVSSLDPDLT 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +Q L   P+V+KPL  G S G++ +    ++ + +      +H    ++E+Y+ G   T
Sbjct: 141 KNQDLGRGPFVVKPLSEGDSEGVVFVDSLDNLAMVINDIPKASHD-HWMVEEYIQGDHGT 199

Query: 179 CGVMGDASLDVTEIAVPKS---DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             +  D        A+          Y+          +    +   + + ++R   + +
Sbjct: 200 VSMFRDEDGLHISDAIVFDLPDGHRLYDQALKYRIDNPISIHLLDPAVGERLEREISMMY 259

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            A+ C G++R D++    S    +LEIN  PG+ P S      +    SF + L   +  
Sbjct: 260 MALQCEGVTRFDYVI--RSGTPHYLEINTIPGLYPGSNSSRCFSST-MSFEQFLY--IST 314

Query: 296 ASCLR 300
           A+ +R
Sbjct: 315 AANIR 319


>gi|154173627|ref|YP_001408215.1| D-alanyl-alanine synthetase A [Campylobacter curvus 525.92]
 gi|112802460|gb|EAT99804.1| D-alanine--D-alanine ligase (D-alanylalanine
           synthetase)(D-Ala-D-Ala ligase) [Campylobacter curvus
           525.92]
          Length = 347

 Score = 85.3 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 61/312 (19%), Positives = 113/312 (36%), Gaps = 47/312 (15%)

Query: 2   AVLMGGISSEREVSLSSG---KACASA------LEDAGFKVSQIDVDR------------ 40
            V+ G  S E E+S+ S    K            +    K   I+               
Sbjct: 4   GVVFGAKSFEHEISIVSAIVLKNVLKQELSFIFCDKER-KFYLIEPTDMRANFFSSGKYK 62

Query: 41  --------------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                              +  L+ D+  N++HG  GEDG   ++ +   I Y    + A
Sbjct: 63  KCKKLFLMACGFYTHSLFGVKRLEVDVYINLIHGMDGEDGKFASLFDFYGISYIGPRLEA 122

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S +S +K  +K +    GV      ++           + P ++KP + GSS+G+ V+K 
Sbjct: 123 SVMSYNKELTKFLAQKVGVKTLDYEMITYE---ELPKFALPIILKPARLGSSIGVSVVKD 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---GVMGDASLDVTEIAVPKSDFYSYE 203
           +        +  ++    ++L+E +++G++       ++             K +F  YE
Sbjct: 180 ESEFEYA--RDVAFEFDKEVLVEPFIEGVKEYNLAGCMIDGKMRFSIVEEPKKKEFLDYE 237

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262
            KY S ++          +  ++  +  F+     G  G I R DF       +V+  EI
Sbjct: 238 QKYMSFSNESKAQEARIDEELRDRLKENFVKIYGFGFEGAIIRCDFFVIE--GEVYLNEI 295

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 296 NPNPGSLANYLF 307


>gi|289524161|ref|ZP_06441015.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289502817|gb|EFD23981.1| putative D-ala D-ala ligase domain protein [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 344

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 119/298 (39%), Gaps = 26/298 (8%)

Query: 22  CASALEDAGFKVSQIDVDRS-------VGLVLAHLKPDLAFNVLHGNFGEDGL---VQAI 71
            A AL   G K   + V +        +   +    PD  FN+  G   +          
Sbjct: 27  VAKALASVGHKTYVLGVTKKDLRSFDVLENKIKRFWPDCIFNLFEGFSDDSKKEVLFATF 86

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LE L IP+T +G  A   S+DK+ +K++++   VP    + +   + D + L  P ++  
Sbjct: 87  LESLNIPFTGNGSAALQASLDKLMAKKLLTKKNVPAPKGLCLESTSFDLEGLPCPAFIKP 146

Query: 132 PLKGGSS--LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
             + GS       ++     +   + +         +++E++++G E   G++G    +V
Sbjct: 147 RFEDGSVGIDDSSLVTSKSQLKEAVARKILTFPAG-IIVEEFLEGREFNVGLIGLPPYEV 205

Query: 190 TEIAVPKSDFYS-------YELKYSS----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             I++   + Y        Y  K+ +           P  +P ++   + R+A  A  A+
Sbjct: 206 AGISMIDYEDYPEALPFLDYGAKWDTKSPGYRIAPENPKFLPREMKDSLIRMAKRAGIAL 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            C+G  R D        +++ +++N  P +   S        +G  +  L+ ++++ A
Sbjct: 266 SCKGYFRVDMR--ERDGEIYVIDVNPNPDLNVESGLANQCRRSGLPYEALISYIIDTA 321


>gi|325917215|ref|ZP_08179442.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325919003|ref|ZP_08181067.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325534787|gb|EGD06719.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325536605|gb|EGD08374.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 73

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 15/55 (27%), Positives = 30/55 (54%), Gaps = 1/55 (1%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G++R D        ++   E+N  PG T +S++P++   +G  +R L+  ++E A
Sbjct: 2   GMARVDVFLCA-DGRIVINEVNTLPGFTRISMYPKLWQASGLDYRSLITQLIELA 55


>gi|6403498|gb|AAF07838.1|AC010871_14 unknown protein [Arabidopsis thaliana]
          Length = 515

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 76/381 (19%), Positives = 126/381 (33%), Gaps = 88/381 (23%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKV--SQIDVD----------------RSV 42
           + ++ GG S+ER +SL+S ++    ++  G  V    ID D                   
Sbjct: 80  VGLICGGPSAERGISLNSARSVLDHIQGDGINVSCYYIDPDLKAFAISSAQVYSNTPSDF 139

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   IP+  +G   
Sbjct: 140 DFKLESLAQGFSSLSELAEHLVSAVDIVFPVIHGRFGEDGGIQELLESHNIPFVGTGSRE 199

Query: 87  SALSMDKM-----------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
              + DK             +       G  V  S +   FT +   L     V+KP K 
Sbjct: 200 CFRAFDKYEASLELKELGFMTVPNYLVQGTGVDKSEIALWFTDNQLDLEMGKVVVKPAKA 259

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD------------GIELTCGVMG 183
           GSS+G+ V            +       D++++E +++            G    C  + 
Sbjct: 260 GSSIGVKVAFGVNDSIKKATELILEGIDDRVVVEVFIEDAYEFTAIVLDVGSGSVCHPVV 319

Query: 184 DA------SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                              + F        +   T+  P + P+ + K ++  A L  Q 
Sbjct: 320 LMPTEVQLQFHGIGDPKENAIFDYRRKYLPTQQVTYHTPPRFPIHVIKSIREEASLIFQK 379

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP--GMTPVSIFPEMAA---------------- 279
           +G R  +R D  +   +  +        P  GM   S   + A+                
Sbjct: 380 LGLRDFARIDGWYLAPNSNL------SSPISGMEQTSFLFQQASKVIKDIVTLMIIDSYI 433

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G+S   +L  +V  A C R
Sbjct: 434 QVGFSHSNILRTIVHRA-CSR 453



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 3   VLMGGISSEREVSLSSGKACASALED 28
           V+ GG +SER+VS+ SG      L+ 
Sbjct: 485 VIFGGDTSERQVSVMSGTNVWVNLQR 510


>gi|224368435|ref|YP_002602598.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
 gi|223691151|gb|ACN14434.1| DdlB1 [Desulfobacterium autotrophicum HRM2]
          Length = 339

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 110/305 (36%), Gaps = 29/305 (9%)

Query: 21  ACASALEDAGFK--VSQIDVDRS-VGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILEL 74
           A + AL   G++      D+D + +   L  +KP + FN+   L G+     +V A++E 
Sbjct: 29  AVSQALSGLGYEPIAVPCDLDLNALKQTLTAMKPAVVFNLVESLDGHGRLIQVVPALVEA 88

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVI 130
           L    T     A  L+  K+ +K+ + S G+P    I      +  Q          ++I
Sbjct: 89  LGYACTGCPAEAIYLTSHKVMAKERMRSLGLPTADWINPVPLDIPWQGAADLGPTGTWII 148

Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM----- 182
           K L   +S       ++K +      LL   +   G     EQ++ G E    +M     
Sbjct: 149 KSLWEHASLGLELENLVKGNSREIAALLPDRASALGGACFAEQFIQGREFNLSLMDTDKG 208

Query: 183 ----------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
                                V     +  +             +     +   ++RL+ 
Sbjct: 209 VRVLPPAEIIFKGFDHDQPKIVGYRAKWVQDAAEYHNTPRSFDFSPKDAPLIANLERLSL 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                 G RG +R DF  D L    F LE+N  P ++P + F      AG S  + +  +
Sbjct: 269 GCWHGFGLRGYARVDFRVDDLGN-PFILEVNTNPCISPDAGFCAALEQAGISHGQGIHMI 327

Query: 293 VEDAS 297
           ++ +S
Sbjct: 328 LKQSS 332


>gi|167038556|ref|YP_001666134.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|320116951|ref|YP_004187110.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166857390|gb|ABY95798.1| D-alanine--D-alanine ligase [Thermoanaerobacter pseudethanolicus
           ATCC 33223]
 gi|319930042|gb|ADV80727.1| D-alanine--D-alanine ligase [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 325

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN           ++ +  L      +
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNAS--------SMKEVAFLEVFNIPY 89

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140
            G     ++ DK   K +V+S G+P    ++            +  P  +KP+ G  S G
Sbjct: 90  VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196
           I              ++   +   G   LIE++++G E+T G++G     V         
Sbjct: 150 IDEENIIYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +   +        N     P ++P ++ ++++  A   ++ +  +  +R D +       
Sbjct: 210 NVKTNTYEHKMFDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268

Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296
            ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|306520162|ref|ZP_07406509.1| putative D-alanine:D-alanine ligase (putative
           vancomycin/teicoplanin A-type resistance protein)
           [Clostridium difficile QCD-32g58]
          Length = 313

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 80/309 (25%), Positives = 126/309 (40%), Gaps = 68/309 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL---------------- 44
           +AV+ GG S+E +VSL S  A    L    + +  I + R                    
Sbjct: 6   IAVIFGGNSTEYDVSLQSAFAVLENLNTEKYDIIPIGITREGNWYHYIGDYNNIQNNTWF 65

Query: 45  -------------------VLAHLKPDLA-------------------------FNVLHG 60
                              ++  L PD                           F VLHG
Sbjct: 66  ERDTDIIPVIVSQNRVKNGIIEFLIPDAVSQNHIPNSAIESCENDIKYTKLDFVFPVLHG 125

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
             GEDG VQ + EL  I     G L+SAL MDK +S ++V S G+ V  SIL+      +
Sbjct: 126 KNGEDGTVQGLFELAGIQVIGCGTLSSALCMDKDKSHKLVHSEGIKVPKSILLKYSDKFN 185

Query: 121 ----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-- 174
                  ++ P  IKP++ GSS GI  I K + + + +    ++ H ++++IE+ +DG  
Sbjct: 186 VAELSKDLTYPLFIKPVRAGSSFGISKIYKKEELQVAV--DLAFEHDNEVIIEENIDGFE 243

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +        D  +   +       F+ Y  KY+  +S   +PA+I LD  K +Q  A + 
Sbjct: 244 VGCAVLGNDDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKII 303

Query: 235 HQAIGCRGI 243
           ++ +GC G 
Sbjct: 304 YRTLGCSGF 312


>gi|170104100|ref|XP_001883264.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164641717|gb|EDR05976.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 375

 Score = 84.9 bits (208), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 72/326 (22%), Positives = 123/326 (37%), Gaps = 50/326 (15%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLA--------HLKPDLAFNVLHGNFG---EDGLVQ 69
           A A AL   G++V ++   R++   LA        H   D+ FN+  G  G    +G V 
Sbjct: 40  AIAEALTALGYRVDRVGNARALISRLASYDREDSFHCPWDIVFNICAGRSGIAGREGHVP 99

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR----------FTMD 119
           +ILE   IP+  S     +L +DK ++K V+   G+   P  +V+               
Sbjct: 100 SILECYNIPFVLSDSSTFSLCLDKAKTKMVLEFSGIATAPFAVVHPGQTAEDAIQKSPHR 159

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVI---KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  P  +KP    +  GI  +        +   +        G  +LIE++++G E
Sbjct: 160 PLLYRQLPLFVKPCTESTGKGIWKMSKITNWSQLNQVVQSLQYKFPGHDMLIEKFLNGRE 219

Query: 177 LTCGVMGDASLDVTEIAVPKSD----------------------FYSYELKYSSLNSTHV 214
            T G++G         A+                          FYS+ +K     +  V
Sbjct: 220 FTVGIVGTGENARVIFAMEIKYRLHETKADHDAAQPIASEDDADFYSFAIKSCVHWNEIV 279

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL---FDPLSRKVFWLEINVQPGMTP- 270
                   +      LA  A++ +GCR + R D      DP   +   +E+N  PG+ P 
Sbjct: 280 DLCNGSDQLATRAGELALRAYRCMGCRDVGRIDVRCDVLDPDLAQPHIMELNPLPGIQPG 339

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDA 296
            S   + A + G S+  L+  +++ A
Sbjct: 340 YSDLVKGAEFVGISYEALVGQIMDSA 365


>gi|313619829|gb|EFR91419.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 92

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 20/76 (26%), Positives = 38/76 (50%), Gaps = 1/76 (1%)

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +I ++++  A  A   +   G+ R+DF       ++F  E+N  PG TP S++P +   
Sbjct: 2   PEILEQMKEYAVQAFLGLDASGLVRADFFLTE-DNQLFLNEVNTMPGFTPYSMYPLLWQE 60

Query: 281 AGYSFRELLLWMVEDA 296
            G  +  L+  +V+ A
Sbjct: 61  TGLPYGALIERLVDLA 76


>gi|297170877|gb|ADI21895.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [uncultured gamma proteobacterium HF0130_26L16]
          Length = 211

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 48/199 (24%), Positives = 83/199 (41%), Gaps = 47/199 (23%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------ 50
           +L GG S+E EVS+ S ++   A++   ++V    + R+    L   +            
Sbjct: 8   LLFGGQSAEHEVSVVSARSVYQAIDSDRYEVILAGISRTGQWFLEDGEASLLEHSEVSNG 67

Query: 51  --------------------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
                                      D+ F +LHG  GEDG VQ +LEL +  Y  +G+
Sbjct: 68  SGSPVQLGAGQRELVALDGNPVGSTAFDVVFPLLHGPRGEDGSVQGLLELADAAYVGAGV 127

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKG 135
            ASA+ MDK  ++ V +  G+     +++ R            + +  +  P  +KP+  
Sbjct: 128 AASAVGMDKELARAVFAQAGLRQTEYLVIRRSAWSADRQGALEEIEAKLRYPLFVKPVNL 187

Query: 136 GSSLGIIVIKKDQSIPLDL 154
           GSS+GI  +   QS+   +
Sbjct: 188 GSSIGISKVHDSQSLDRAI 206


>gi|213853003|ref|ZP_03382535.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. M223]
          Length = 269

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 50/228 (21%), Positives = 96/228 (42%), Gaps = 51/228 (22%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH------------ 48
           + ++ GG S+E EVSL S K    A++   F V  + +D++    +              
Sbjct: 6   VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVVLLGIDKAGQWHVNDAENYLQNADDPA 65

Query: 49  ---LKP----------------------------DLAFNVLHGNFGEDGLVQAILELLEI 77
              L+P                            D+ F ++HG  GEDG +Q +L +  +
Sbjct: 66  HIALRPSAISLAQVPGKHQHQLINAQNGQPLPTVDVIFPIVHGTLGEDGSLQGMLRVANL 125

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTMDSQHLISPPYVIK 131
           P+  S +L+SA  MDK  +K+++   G+ + P I             + +  +  P  +K
Sbjct: 126 PFVGSDVLSSAACMDKDVAKRLLRDAGLNIAPFITLTRTNRHAFSFAEVESRLGLPLFVK 185

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           P   GSS+G+  +  +      +  + ++    ++++EQ + G E+ C
Sbjct: 186 PANQGSSVGVSKVANEAQYQQAV--ALAFEFDHKVVVEQGIKGREIEC 231


>gi|257459534|ref|ZP_05624643.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
 gi|257442959|gb|EEV18093.1| D-alanine--D-alanine ligase [Campylobacter gracilis RM3268]
          Length = 343

 Score = 84.5 bits (207), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 64/312 (20%), Positives = 108/312 (34%), Gaps = 45/312 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF------ 55
            ++ G  S E EVS+ S  A  +AL+    +    D +R    +         F      
Sbjct: 4   GIVFGAQSYEHEVSIISAIAVKNALKGWDLEFVFCDKNRKFYRIEDKNMRAAYFKQGSYA 63

Query: 56  -----------------------------NVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                                        N++HG  GEDG + A+ E   IPY    I A
Sbjct: 64  KAKELSIGAGGFFESGMFSKSMLEVGTYINLIHGCDGEDGKMAALFEFFGIPYIGPRIEA 123

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           S LS +K+ +K + +   V   P  +V      S    + P ++KP   GSS+GI + K 
Sbjct: 124 SVLSYNKILTKHLAAIANVKTLPYEIV---NRTSLPNFNFPIIVKPAHLGSSIGISIAKN 180

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYE 203
           +      L Q+   +    ++   + +  E       + G       E    +       
Sbjct: 181 ESEFSYALDQAFELD-DSAIVEPYWENVKEFNLAGAKIDGKIVFSNIEEPKKEGYLNFDR 239

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEI 262
                  S  + PA+    +  +++      + A    G + R DF       +++  EI
Sbjct: 240 KYLDFSRSGAIEPARPGALLEGKMKDAFTRLYNAGSFDGALIRCDFF--EKEGEIYLNEI 297

Query: 263 NVQPGMTPVSIF 274
           N  PG     +F
Sbjct: 298 NPNPGSLANYLF 309


>gi|307299025|ref|ZP_07578827.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
 gi|306915450|gb|EFN45835.1| D-alanine--D-alanine ligase [Thermotogales bacterium mesG1.Ag.4.2]
          Length = 315

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 71/290 (24%), Positives = 125/290 (43%), Gaps = 20/290 (6%)

Query: 20  KACASALEDAGFKV--SQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELL 75
            +  S+LE   F+V     ++D    L       DL FN+    GN      + A+L+LL
Sbjct: 20  NSVVSSLEKI-FEVDSRPFEIDAVGRLR----GTDLVFNLTTAMGNTERQVHLPAVLDLL 74

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            IP+T SG  A+AL ++K  +K ++ + G+       V           S P ++KP+K 
Sbjct: 75  GIPFTGSGTTANALCINKTLTKLIMKAYGISTPEFFSVRPGETADNLPFS-PAIVKPVKE 133

Query: 136 GSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM-----GDASLD 188
           G + GI      +        +           L+E++++G E T G++         +D
Sbjct: 134 GGAKGIWEDSVVESVDDMQRAVSRIHERFQQPALVERFIEGREFTVGIVGNEVLPIMEID 193

Query: 189 VTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            + +      FYSY +K      + ++ PAKI       ++  +    Q +  +   R D
Sbjct: 194 FSSLPDHLETFYSYRVKQFHGDETNYICPAKISRREETVIREFSMRVFQVLDLKDYCRID 253

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVEDA 296
              D    K+++LE+N  P + P  S   +MA   G+S+ +L+  +V  A
Sbjct: 254 LKIDDE-GKIYFLEVNSLPLLVPDYSDIVKMAETRGWSYEDLINRIVASA 302


>gi|115378993|ref|ZP_01466124.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
 gi|115363997|gb|EAU63101.1| D-alanine--D-alanine ligase [Stigmatella aurantiaca DW4/3-1]
          Length = 593

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 62/299 (20%), Positives = 113/299 (37%), Gaps = 22/299 (7%)

Query: 20  KACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNF--GEDGLVQAILEL 74
            A A A+E  G ++ + +V          L    PDL FN   G      +    A+ + 
Sbjct: 27  NALAGAIERLGHRLERFEVSGPASRTVARLEAYSPDLIFNTAEGRRGRFREAFYPALFDE 86

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L  PYT S   A A+++DK  +K +++  G+       V + +  +   +  P ++KP  
Sbjct: 87  LGFPYTGSDAYALAVTLDKQLTKLILAKHGIRTPGWQYVEKLSELTAENLRFPVIVKPNF 146

Query: 135 GGSSLGIIVIK--KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            GSS GI      +        +  +   +   +L+E+Y+ G +LT   +     D   +
Sbjct: 147 EGSSKGITQDSIAETLDEVRAKVTQALAKYPAGVLVEEYIGGKDLTVPFLAAVDNDYDGV 206

Query: 193 AVPKSDFYSYELKYSSLNSTHVL--------------PAKIPLDIYKEVQRLAFLAHQAI 238
             P                 +                PA I     ++V+++A    Q +
Sbjct: 207 LSPVEYVIDPAATVGRKYPIYDYELKTKHHSAVRVRAPANISAKTAEDVRKMAQTIFQVL 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            CR + R DF         ++LEIN  P + P +     A   G     ++  +++ A+
Sbjct: 267 DCRDLGRIDFRLSDA-GVPYFLEINALPSLEPGAGIYASAELDGLHLDGVINSIIQSAA 324



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/175 (24%), Positives = 83/175 (47%), Gaps = 7/175 (4%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGL 67
           +E + S ++ +A   A+   G +V  ++ ++ +  VLA    D+ FN+  G      +  
Sbjct: 369 AEYD-SPATLQAIREAIASWGHEVVDLEANQELPSVLASTPLDVVFNIAEGFKGRNRESQ 427

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP 127
           V A+LELL+IPYT S     ++++DK  +K++V   G+      L+           + P
Sbjct: 428 VPAMLELLDIPYTGSDPATLSIALDKALAKKIVRQAGIHTPNFQLMLTGKERLNKDFTFP 487

Query: 128 YVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
            ++KP+  GSS       V   +  +   +++  +  +    L+E+Y+ G E T 
Sbjct: 488 LMVKPVAEGSSKGVVSKSVCHSEAELRE-VVKEIASKYKQPALVEEYIGGREFTV 541


>gi|167040420|ref|YP_001663405.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300913706|ref|ZP_07131023.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307723279|ref|YP_003903030.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
 gi|166854660|gb|ABY93069.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X514]
 gi|300890391|gb|EFK85536.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X561]
 gi|307580340|gb|ADN53739.1| D-alanine--D-alanine ligase [Thermoanaerobacter sp. X513]
          Length = 325

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 55/290 (18%), Positives = 108/290 (37%), Gaps = 27/290 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLV---LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A+++AGF    I+           +   K DL FN           ++ +  L      +
Sbjct: 38  AIKEAGFDSVLIEWKEDPLETYETIKKEKVDLIFNTS--------SMKEVAFLEVFNIPY 89

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLG 140
            G     ++ DK   K +V+S G+P    ++            +  P  +KP+ G  S G
Sbjct: 90  VGSGLDVVATDKRMRKDIVASHGLPTPKYVIAENPQEIPSVDHLKFPLFVKPISGRGSAG 149

Query: 141 IIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE--IAVPK 196
           I              ++   +   G   LIE++++G E+T G++G     V         
Sbjct: 150 IDEENIIYDKDKLPQVVSKITEKIGQAALIEEFIEGKEVTVGIIGYKHPQVLPLLEVGYN 209

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +   +        N     P ++P ++ ++++  A   ++ +  +  +R D +       
Sbjct: 210 NVKTNTYEHKMFDNEIIKCPIEVPKEVEEKIKETALNIYKVLNAKDFARIDMILS-KDNV 268

Query: 257 VFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELLLWMVEDA 296
            ++LE+N   G+T  S              MA  AG +  E +  ++E A
Sbjct: 269 PYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFIGKIIESA 318


>gi|149192572|ref|ZP_01870736.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
 gi|148833591|gb|EDL50664.1| D-alanylalanine synthetase [Vibrio shilonii AK1]
          Length = 117

 Score = 84.2 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +    +   A      +  R +SR DF       K++  E+N  PGMTP+S+FP+M  ++
Sbjct: 42  EQLNIIHTSAVKVFTQMKLRHLSRIDFFLTE-DNKIYLNEVNTFPGMTPISMFPKMVEHS 100

Query: 282 GYSFRELLLWMVEDA 296
           G  F E L   +E +
Sbjct: 101 GLEFSEFLSDCIESS 115


>gi|224437372|ref|ZP_03658344.1| D-alanyl-alanine synthetase A [Helicobacter cinaedi CCUG 18818]
 gi|313143837|ref|ZP_07806030.1| ligase [Helicobacter cinaedi CCUG 18818]
 gi|313128868|gb|EFR46485.1| ligase [Helicobacter cinaedi CCUG 18818]
          Length = 345

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 64/311 (20%), Positives = 122/311 (39%), Gaps = 45/311 (14%)

Query: 3   VLMGGISSEREVSLSSGKACASAL---------EDAGFKVSQIDVD-------------- 39
           V+ GG+S E E+S+ S  A    L          D+  +   I                 
Sbjct: 5   VIFGGVSFEHEISIVSAVALKKVLGERISNFIFLDSLHRFYLIPATLMKSKTFSSGEYKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       +        + P+   +++HG  GEDG + A+L+   IP+    I +S
Sbjct: 65  CTEIFLQRSSFVKKSLFGFKAIIPNTLISLIHGADGEDGSMSALLDFYHIPFIGPRIESS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            +S +K  +K    S GV V    ++ R +      +  P ++KP + GSS+G+ V+ K+
Sbjct: 125 VMSFNKALTKIYAQSRGVKVLDHEILTRNSP--NPTLPYPLILKPSRLGSSIGVSVVNKE 182

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----CGVMGDASLDVTEIAVPKSDFYSYE 203
             +     +  ++ + D +++E +  G++      C +  +    + E    K       
Sbjct: 183 DELEYA--KDLAFEYDDSIVVECFKSGVKEYNLAGCKIGDEFRFSIVEEPSKKEMLDFEN 240

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +  VL A I  ++ K++Q+     ++      + R DF    +  +V+  EIN
Sbjct: 241 KYLDFSRTAQVLKADISQELEKQIQQNFAKLYENAFEGALIRCDFFV--IDNEVYLNEIN 298

Query: 264 VQPGMTPVSIF 274
             PG     +F
Sbjct: 299 PIPGSMANYLF 309


>gi|188501453|gb|ACD54586.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 72/323 (22%), Positives = 130/323 (40%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL------------- 46
           +A+L GG S E   ++ S K      + D  ++   I V++                   
Sbjct: 10  IALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIYVNKDGWYYEDSNNNEQKIHIDR 69

Query: 47  ----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                       +K  LAF ++ G  GEDG +Q  L++  +P+    +L+SA++ +K  +
Sbjct: 70  NNFSLTLPNQETIKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129

Query: 97  KQVVSSCG---------VPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVI 144
            ++V S           + V  S+ V+   +      +    P ++KP   GSSLG+  I
Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDSLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSD 198
            +   +      +      +Q+L+EQ++DG ELT G+           +           
Sbjct: 190 TEISQLNEAFNVAF--KESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F S      S  +  + PA +  +I K V+      ++ +   G+ R D +      K+F
Sbjct: 248 FDSETKFEGSPETQVITPANLNEEIKKRVEIGVRELYEKLNLSGLVRIDLMLRLPDEKIF 307

Query: 259 WLEINVQPGMTPVSIFPEMAAYA 281
           +LE+N  P  T  SI  +  A +
Sbjct: 308 FLEVNTAPSQTEYSIIMQQMAQS 330


>gi|268315712|ref|YP_003289431.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
 gi|262333246|gb|ACY47043.1| D-alanine--D-alanine ligase [Rhodothermus marinus DSM 4252]
          Length = 336

 Score = 83.8 bits (205), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 61/286 (21%), Positives = 117/286 (40%), Gaps = 15/286 (5%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYT 80
           A+A+   G K  +I     + + L  L+ D   ++  G      +     + E+  IPY 
Sbjct: 43  AAAIRKLGHKPVRIGTAYDLLVELPDLRIDCGISIAEGARGRNREAYAPMLFEMAGIPYI 102

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSS 138
            S  L  +LS+DK  +K +V++ GVP  P            H +    P  +KP   GSS
Sbjct: 103 GSDPLTLSLSLDKAWTKDLVAAAGVPTPPYRTYAGPEDVDPHDLPGPFPLFVKPRYEGSS 162

Query: 139 LGIIVIKKDQ--SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            GI    K        + +   +  +  ++++E +++G E T  V+G+   +   +    
Sbjct: 163 KGITAASKVHSLEALREQVARLTATYRQEVIVEPFIEGSEFTVAVIGNNPPEPLPVLQRA 222

Query: 197 SDFYSYELKYSSLNSTHVL--------PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            +  +    ++  +                +  ++ + +Q+LA   ++ + CR  +R DF
Sbjct: 223 VEATTGIGLHALEHRGMKPAAALEAAPYVPLTDELERCLQQLAVRVYEKLQCRDFARLDF 282

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             D    K ++LEIN  P   P   F  +A      + E L  +++
Sbjct: 283 RVDRE-GKPWFLEINPLPTFAPDGTFAILAELMQRPYVEFLAEILQ 327


>gi|32265630|ref|NP_859662.1| D-alanyl-alanine synthetase A [Helicobacter hepaticus ATCC 51449]
 gi|39930848|sp|Q7VJW2|DDL_HELHP RecName: Full=D-alanine--D-alanine ligase; AltName:
           Full=D-Ala-D-Ala ligase; AltName: Full=D-alanylalanine
           synthetase
 gi|32261678|gb|AAP76728.1| D-alanine-D-alanine ligase [Helicobacter hepaticus ATCC 51449]
          Length = 350

 Score = 83.4 bits (204), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 67/315 (21%), Positives = 120/315 (38%), Gaps = 48/315 (15%)

Query: 3   VLMGGISSEREVSLSSGKACASAL-EDAG--------FKVSQIDVD-------------- 39
           VL GG+S E E+S+ S  A    L E  G         +   I +D              
Sbjct: 5   VLFGGVSFEHEISIVSAVALKKVLGESIGNFIFLDSSHRFYLIPLDSMKSKLFSSGDYKK 64

Query: 40  ------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
                       +        + P    N++HG  GEDG V A+L+   +P+    I +S
Sbjct: 65  CTEIFLQRGAFVKKTFFGFKPIIPHTLINLIHGADGEDGSVSALLDFYHLPFIGPRIESS 124

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            +S +K+ +K   +  GV V    ++ R     +H I+ P ++KP + GSS+G+ VI ++
Sbjct: 125 VMSFNKVFTKIFAAQRGVKVLDYEILTRANPHLKH-IAYPIILKPARLGSSIGVSVINEE 183

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIE------LTCGVMGDASLDVTEIAVPKSDFYS 201
           + +  D  +  ++ + D ++ E +  G++                   + I  P      
Sbjct: 184 KEL--DYGRDLAFEYDDTIIAESFKSGVKEYNLAGCRVKNGSQDEYRFSIIEEPSKKELL 241

Query: 202 YELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              +     S       A I   +  ++Q      ++      + R DF    +  +V+ 
Sbjct: 242 DFERKYLDFSRTAQVLQADISSALVAKLQENFMKLYENAFEGALIRCDFFV--IDDEVYL 299

Query: 260 LEINVQPGMTPVSIF 274
            EIN  PG     +F
Sbjct: 300 NEINPIPGSMANYLF 314


>gi|237751270|ref|ZP_04581750.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
 gi|229372636|gb|EEO23027.1| D-alanyl-alanine synthetase A [Helicobacter bilis ATCC 43879]
          Length = 349

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 64/332 (19%), Positives = 112/332 (33%), Gaps = 55/332 (16%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDA-----------GFKVSQIDVD------RSVGLV 45
           ++ GGIS E E+S+ S    A  L                    I+         S    
Sbjct: 5   IIFGGISYEHEISIVSAITMAQKLGKNIKITHFIFLDSNHDFYLIESSNMKSKYFSSLAY 64

Query: 46  LAHLKPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
               K ++                       N++HG  GEDG++  + +  +I Y    +
Sbjct: 65  KQAKKIEIGAGGFYESGFLGKKKMLNTGLLLNLIHGGDGEDGVLSGLFDFYKIAYIGPRL 124

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            AS LS +K  +K     CGV   P  ++ R     +     PY+IKP   GSS+G+ V+
Sbjct: 125 EASILSYNKRLTKLYAKECGVETLPYYVLKRNETC-EIPFELPYIIKPTCLGSSIGVCVV 183

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +    +   L  +      ++++IE +  GI+         + +     + +        
Sbjct: 184 EDQAKLSYGLDCAF--EFSNEVIIEPFKKGIKEYNLAGTKVNGEFILSLIEEPVKKDLLG 241

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI----GCRGISRSDFLFDPLSRKVFWL 260
                            +I + + +    A + I        + R DF     S K++  
Sbjct: 242 FEDKYLDFSRTEEIKNAEITESLTKNLHEAFKKIYNTTFEGALIRCDFFV--SSDKIYLN 299

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           EIN  PG     +F          F  +L  +
Sbjct: 300 EINPIPGSMANYLFS--------DFESVLEKI 323


>gi|188501473|gb|ACD54605.1| D-alanyl-D-alanine ligase-like protein [Adineta vaga]
          Length = 349

 Score = 83.0 bits (203), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 74/342 (21%), Positives = 139/342 (40%), Gaps = 51/342 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVL------------- 46
           +A+L GG S E   ++ S K      + D  ++   I V++                   
Sbjct: 10  VALLAGGYSPEGVCAVWSAKHIEKLFQGDEEYQTYLIHVNKDGWYYEDSNNNGQRIHIDR 69

Query: 47  ----------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
                       +K  LAF ++ G  GEDG +Q  L++  +P+    +L+SA++ +K  +
Sbjct: 70  NNFSLTLPNQETVKFKLAFLLIGGAPGEDGQIQGYLQISNVPFIGCNLLSSAITFNKSIA 129

Query: 97  KQVVSSCG---VPVCPSILVNRF---------TMDSQHLISPPYVIKPLKGGSSLGIIVI 144
            ++V S     + V PSI V R               +    P ++KP   GSSLG+  I
Sbjct: 130 NRIVRSFNSSIIHVSPSIDVFRSVSVDDLLVLHALETNHFRLPLIVKPADSGSSLGVTKI 189

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA------SLDVTEIAVPKSD 198
            +   +      +      +Q+L+EQ++DG ELT G+           +           
Sbjct: 190 TEISQLNEAFNVAF--KESNQILVEQFIDGRELTVGLFKINGDIQVLPITEIVHQRASGF 247

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F S      S  +  + PA +  ++ K+V+      ++ +   G+ R D +      K+F
Sbjct: 248 FDSETKFEGSPETQVITPANLNEEVKKQVEAGVRELYEKLNLSGLVRIDLMLKLPDEKIF 307

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYS-------FRELLLWMV 293
           +LE+N  P  T  S+  +  A + ++       +++L   ++
Sbjct: 308 FLEVNTAPSQTEYSLIMQQMAQSEWAGDKRIELYKQLFKEVI 349


>gi|182413979|ref|YP_001819045.1| D-alanine--D-alanine ligase domain-containing protein [Opitutus
           terrae PB90-1]
 gi|177841193|gb|ACB75445.1| D-alanine--D-alanine ligase domain protein [Opitutus terrae PB90-1]
          Length = 339

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 52/295 (17%), Positives = 117/295 (39%), Gaps = 23/295 (7%)

Query: 20  KACASALEDAGF---KVSQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILE 73
               +AL + G+    ++  D    +   +   +PD+ FN+      N   D  + + L 
Sbjct: 36  AGVLAALNELGYPNEHLAIFDDLEPLRQKVQAFQPDVVFNLADQFRNNRAFDQHIVSFLA 95

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISPPYVIKP 132
           + +IP+T  G     L   K  SK+++S   +      ++ R     +   +  P ++KP
Sbjct: 96  MSDIPFTGCGSTGLTLCKHKGVSKKILSYHRIHTPAFAIIPRGRRAVRPKRLKFPILVKP 155

Query: 133 LKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD-- 188
           LK  +S GI      +      + ++       +  + E+Y++G EL   ++G+  L   
Sbjct: 156 LKEEASYGIAQASFVETDEQFRERVEFVHQKFNNDAIAEEYIEGRELYVSLLGNHRLQVF 215

Query: 189 ------VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-----IYKEVQRLAFLAHQA 237
                   E+   +    +Y+ K+              ++     + ++++      ++ 
Sbjct: 216 PIRELVFREVPPDEPKIATYKAKWDEAYRARWGLENRFVEDLEPALVRKIEATCRRIYRL 275

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G +R D   +    +++++E N  P + P   F   A  AG S+ +L+  +
Sbjct: 276 LTIDGYARLDLRLNAR-NELWFIEANANPILAPDEDFALSAGKAGLSYPQLIDRI 329


>gi|21227150|ref|NP_633072.1| D-alanine-D-alanine ligase-like protein [Methanosarcina mazei Go1]
 gi|20905483|gb|AAM30744.1| D-alanine-D-alanine ligase related protein [Methanosarcina mazei
           Go1]
          Length = 700

 Score = 82.6 bits (202), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 71/292 (24%), Positives = 119/292 (40%), Gaps = 24/292 (8%)

Query: 31  FKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGI 84
            K + +D   ++   L     K DL  N+    F  D      V A+ E L IPYT +G 
Sbjct: 350 IKFTFLDRHETLFEDLRKKAGKTDLVLNLCDEGFYNDPVKELHVPAMFEQLNIPYTGAGP 409

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL---GI 141
              A   DK   + V     +PV   +LV   +  S+  +S P ++KP  G SS      
Sbjct: 410 QCLAYCYDKSLVRGVAREMRIPVAKGVLVTDDSDISRLSLSFPLLVKPNSGDSSFGITQK 469

Query: 142 IVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF- 199
            ++   + +   + ++         LL+E+++ G +++ G++G+           +    
Sbjct: 470 SIVHSREELLDIMKETREKIGSDKPLLLEEFLPGKDISVGIIGNPPSCTVLPITEEDYSA 529

Query: 200 --------YSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                     YE K+   +S   +   PA +P    KEV R        +GCR  +R D+
Sbjct: 530 VPGELPKICGYEAKWLPDSSYWKIKSVPADLPEKTQKEVVRSCLALFTRLGCRDYARFDW 589

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             D    +   LE+N  PG        +MAAYA  S+  +L  ++  A+  R
Sbjct: 590 RLDAE-GRPRLLEVNPNPGWCWDGHLAKMAAYANISYSGMLAAII-GAAKKR 639


>gi|292493558|ref|YP_003528997.1| D-alanine--D-alanine ligase [Nitrosococcus halophilus Nc4]
 gi|291582153|gb|ADE16610.1| D-alanine--D-alanine ligase domain protein [Nitrosococcus
           halophilus Nc4]
          Length = 350

 Score = 82.2 bits (201), Expect = 8e-14,   Method: Composition-based stats.
 Identities = 63/298 (21%), Positives = 113/298 (37%), Gaps = 24/298 (8%)

Query: 22  CASALEDA-GFKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQAILELLE 76
              AL +   ++ + +D   ++   L    PD   N           ++  + A+LE+L 
Sbjct: 49  VKEALGELQDYRFTYLDNHSTLIANLTADPPDFVLNFCDTGYKNQARQELHIPALLEMLG 108

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           IPY+ +G     +  DK   + V  + G+PV     V           + P +IKP +  
Sbjct: 109 IPYSGAGPTCLGMCYDKSLVRSVARTHGIPVPAETFVRGNDRHGAVSQNFPVLIKPNRAD 168

Query: 137 SSLGIIVI---KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            SLGI        +Q     L + +       LLI++++ G E + GV+G+ +     + 
Sbjct: 169 GSLGITKDSLVHDEQQARAYLNKLAMEFPNWDLLIQEFLPGEEYSVGVLGNPASGFMILP 228

Query: 194 VPKSDFYSYEL---------------KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +   D+                    +           A +  D+ + +        + +
Sbjct: 229 ILAVDYSKLVASRLPPILAYASKIDPQSPYWTDIKYCEASLKEDLRQRLVDYCLFLFERL 288

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCR  +R DF  D    ++  LE+N  P          MA +AGY + ELL  ++  A
Sbjct: 289 GCRDYARFDFRTDAQ-GEIKLLEVNPNPAWCWDGKLNLMAGFAGYHYAELLERILHAA 345


>gi|218462035|ref|ZP_03502126.1| putative D-alanine--D-alanine ligase A [Rhizobium etli Kim 5]
          Length = 268

 Score = 81.5 bits (199), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 57/220 (25%), Positives = 95/220 (43%), Gaps = 43/220 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL----------- 49
           +AVL GG S+E EVS+ S      AL+   +    I + R    + +             
Sbjct: 10  IAVLFGGRSAEHEVSILSATNVMGALKPEKYDAFPIFITREGRWLTSAFVDGALATPSSG 69

Query: 50  --------------------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F VLHG  GEDG VQ + ++  +P    G
Sbjct: 70  TEICLVPGGCGRVMAIPANGAPHELATIDMLFPVLHGLHGEDGSVQGVAQVARVPLAGCG 129

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
           IL SA ++DK  +K+++ + G+PV  ++ ++  T  S    +  +  P  IKP + GSS+
Sbjct: 130 ILGSAAALDKEIAKRLLRAAGLPVARAVTIHEGTSPSLAALEGELGLPLFIKPARQGSSV 189

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           G+  +   Q     L  + ++ H   LL E+++ G E+  
Sbjct: 190 GVAKVHASQEFAGAL--AEAFRHDRTLLAEEFIVGREIEF 227


>gi|315427950|dbj|BAJ49541.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 81.5 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 119/297 (40%), Gaps = 25/297 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73
           K     + +  +K   +D    +   L   +    + FN+    F  +  ++A +    E
Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L + YT +G     L  DK + K + SS G+PV    ++      S   +  P ++KP 
Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440

Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G +S       V++    +   + +    W +   +L+E++V+G++LT  ++G+   DV
Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPHDV 500

Query: 190 TEIAVPKSDFY---------SYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237
               + +             +Y  K+   +       +P ++P  + +++          
Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR  +R D+           LE+N  PG      F +     G+S+R +L  ++ 
Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEILR 616


>gi|315426386|dbj|BAJ48025.1| D-alanine-D-alanine ligase [Candidatus Caldiarchaeum subterraneum]
          Length = 640

 Score = 81.1 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 57/297 (19%), Positives = 119/297 (40%), Gaps = 25/297 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAIL----E 73
           K     + +  +K   +D    +   L   +    + FN+    F  +  ++A +    E
Sbjct: 323 KNALHGIRE--YKFIFVDDHSKMIEFLTKNRAGIHMVFNLCDDGFKNNPEMEAHVPALLE 380

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L + YT +G     L  DK + K + SS G+PV    ++      S   +  P ++KP 
Sbjct: 381 MLGVRYTGAGPRCLTLCYDKAKVKAIASSMGIPVPHHTILFNGDNGSLKHVKYPVIVKPN 440

Query: 134 KGGSSL---GIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
            G +S       V++    +   + +    W +   +L+E++V+G++LT  ++G+   DV
Sbjct: 441 YGDNSWGITERNVVRNRDELISAIKEIRVKWGYSGPILVEEFVEGMDLTVSILGNPPQDV 500

Query: 190 TEIAVPKSDFY---------SYELKYSSLNSTHV---LPAKIPLDIYKEVQRLAFLAHQA 237
               + +             +Y  K+   +       +P ++P  + +++          
Sbjct: 501 VLPILTEDYSKLPDGLPKILTYAAKWCPDSPYRFVNSIPVELPHRLREQLIWWCRKLFAM 560

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + CR  +R D+           LE+N  PG      F +     G+S+R +L  ++ 
Sbjct: 561 LECRDYARFDWRL-GSDGVPRLLEVNPNPGWVWDGHFAKACLVLGWSYRRMLHEILR 616


>gi|301513415|ref|ZP_07238652.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB058]
 gi|301596388|ref|ZP_07241396.1| D-alanine--D-alanine ligase [Acinetobacter baumannii AB059]
          Length = 137

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 48/111 (43%), Positives = 65/111 (58%), Gaps = 2/111 (1%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           +AVL+GG S+ER VSL SG+A   AL  +G +    D        L  +  D AF VLHG
Sbjct: 10  VAVLLGGKSAERAVSLDSGQAVLDALLRSGVQAEAFDPQNRSVTEL--VNYDRAFIVLHG 67

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             GEDG +Q +LE L IPYT +G+  SA+ MDK+++KQ+     +P  P  
Sbjct: 68  RGGEDGQIQGVLEWLNIPYTGTGVQGSAIGMDKVKTKQIWQGSDLPTAPYR 118


>gi|326330649|ref|ZP_08196953.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
 gi|325951490|gb|EGD43526.1| putative D-alanine--D-alanine ligase [Nocardioidaceae bacterium
           Broad-1]
          Length = 371

 Score = 80.7 bits (197), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 74/323 (22%), Positives = 124/323 (38%), Gaps = 55/323 (17%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL--------- 53
           ++ GG S+E ++S+ +G      L  AG +V+ +   RS    L   K +          
Sbjct: 8   IVFGGPSAEHDISILTGLQAERVLSGAGVEVTCLYWARSDKWFLVPAKQEARDFLGGEPK 67

Query: 54  ---------------------------------AFNVLHGNFGEDGLVQAILELLEIPYT 80
                                              +  HG  GE G +Q + EL  +  T
Sbjct: 68  GSKAVEFRLGTEKGDGFYTVGGFGGGKRLETGPILSAFHGGAGEAGGIQWLFELAGLKAT 127

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   ++AL MDK+    V+ + G+P   S+     +  +      PY++KP  GGSS+G
Sbjct: 128 GATPASAALGMDKLAFGAVMLNAGLP---SLQRELLSRYAAPSFEGPYIVKPRFGGSSIG 184

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP----- 195
           I V+       L LL +S       ++     D  +L   V     + V+++  P     
Sbjct: 185 IEVVDD-YETGLALLNTSPHLRAGAVVEPYRPDLFDLNASVRTAPEIAVSDVERPLRSDE 243

Query: 196 ---KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                    Y       +S    PA++   + K+++ LA    +  G  GI R DFL D 
Sbjct: 244 AKMYDYSAKYVHTDGLSSSPREFPAQVEESVTKQIKDLAVRVVELTGLTGILRIDFLSDG 303

Query: 253 LSRKVFWLEINVQPGMTPVSIFP 275
              +VF  E+N  PG   + ++P
Sbjct: 304 K-GEVFINEVNSIPGALSLYLWP 325


>gi|307750582|gb|ADN92458.1| truncated D-alanine D-alanine ligase [Enterococcus faecium]
          Length = 230

 Score = 80.3 bits (196), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 56/227 (24%), Positives = 98/227 (43%), Gaps = 48/227 (21%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKP---DL- 53
           + +L GG S+E EVS+ S  +  +A+    ++V  + + +    V   L   KP   D+ 
Sbjct: 3   ITLLYGGRSAEHEVSILSAFSVLNAIYYNYYQVQLVFITKEGQWVKGPLLTEKPASKDVL 62

Query: 54  ------------------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                          F VLHG  GEDG +Q  LE L +PY  +G
Sbjct: 63  HLSWDPSGQTEEGFTGKVINPGEIKEEGAIVFPVLHGPNGEDGTIQGFLETLNMPYVGAG 122

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLK 134
           +L SA +MDK+ +K ++ + GVP  P + V +              +  +  P  +KP  
Sbjct: 123 VLTSACAMDKIMTKYILQAAGVPQVPYVPVLKNQWKENPKKVFDQCEGSLLYPMFVKPAN 182

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
            GSS+GI   +  + +   L  ++++ +  + ++EQ ++  E     
Sbjct: 183 MGSSVGITKAENREELQNAL--ATAYQYDSRAIVEQGIEARENRSCC 227


>gi|77165687|ref|YP_344212.1| hypothetical protein Noc_2222 [Nitrosococcus oceani ATCC 19707]
 gi|254434399|ref|ZP_05047907.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
 gi|76884001|gb|ABA58682.1| conserved hypothetical protein [Nitrosococcus oceani ATCC 19707]
 gi|207090732|gb|EDZ68003.1| hypothetical protein NOC27_1330 [Nitrosococcus oceani AFC27]
          Length = 354

 Score = 79.9 bits (195), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 64/303 (21%), Positives = 110/303 (36%), Gaps = 25/303 (8%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQAILEL 74
            K     L D  ++ + +D   ++   L    PD   N           ++  V A LE+
Sbjct: 42  AKEALGELRD--YQFTYLDNHSALLPQLIADPPDFVLNFCDTGYKNRARQELHVPAFLEM 99

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           L IPY+ +      L  DK   + V  + GVPV     V+   ++   L + P +IKP +
Sbjct: 100 LGIPYSGARPACLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKNFPALIKPNR 159

Query: 135 GGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-----------G 180
           G  S       ++  +      + + +       LLI++++ G E +             
Sbjct: 160 GDGSVGITENSLVYDEPQAHAYINKLAMEFPNCDLLIQEFLPGDEYSVGLLGNPSSGFKI 219

Query: 181 VMGDASLDVTEIAVPKSDFYSYELK----YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +           A       +Y  K               A +   + + +     L  +
Sbjct: 220 LPILKVDYSRLAAHRLPPILAYASKVDSASPYWTDIQYAKAAMDEGLRQRLVGYCRLLFE 279

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +GCR  +R DF  D    +V  LE+N  P          MA +AGY + ELL W+++ A
Sbjct: 280 RLGCRDYARFDFRADVQ-GEVKLLEVNPNPAWCWDGKLNLMAGFAGYRYGELLEWILQAA 338

Query: 297 SCL 299
              
Sbjct: 339 QAR 341


>gi|307352683|ref|YP_003893734.1| type 11 methyltransferase [Methanoplanus petrolearius DSM 11571]
 gi|307155916|gb|ADN35296.1| Methyltransferase type 11 [Methanoplanus petrolearius DSM 11571]
          Length = 635

 Score = 79.5 bits (194), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 117/298 (39%), Gaps = 26/298 (8%)

Query: 24  SALEDAG-FKVSQIDVDRSVGLVLAHL--KPDLAFNVLHGNF----GEDGLVQAILELLE 76
            AL + G ++ +  D   S+   L     K D  FN+    F     ++  V A LE+L 
Sbjct: 329 EALSELGDYEFTYFDNHSSMLSWLRQSGSKADFIFNLCDEGFLNDPRKELHVPAALEILS 388

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKG 135
           IPYT       A   DK   + +     +PV    ++    +   +  I  P ++KP  G
Sbjct: 389 IPYTGGNPQCLAYCYDKSLVRGIAKELDIPVPRAFVINPEDSSFIEFPIHFPVIVKPNFG 448

Query: 136 GSSL---GIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVM--------- 182
            SS       V +    +   +L+  S++     +L+E+++ G +++ G++         
Sbjct: 449 DSSFGITQNSVCRDISELQDAILRLKSFSGDCGTVLVEEFLTGGDISVGIIGNLPDKYEV 508

Query: 183 -GDASLDVTEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 D + +         YE K+   +       +PA +  +  + +          +
Sbjct: 509 LPVIEEDYSSLPRGYPKICGYEAKWDPESPYAGITSIPADLSEEARRFLVASCLKLFGRL 568

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           GCR  +R D+  D  +     LE+N  PG        +MA  A  ++ E+L  +++ A
Sbjct: 569 GCRDYARFDWRID-SNGTPRLLEVNPNPGWCWDGHLAKMAGIAEITYAEMLGMILKAA 625


>gi|289524162|ref|ZP_06441016.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
 gi|289502818|gb|EFD23982.1| D-ala D-ala ligase [Anaerobaculum hydrogeniformans ATCC BAA-1850]
          Length = 353

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 65/307 (21%), Positives = 118/307 (38%), Gaps = 23/307 (7%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN---FGEDGL 67
           E + S S+  A A  +E  GFK    + +  +   LA+ + D  FN+  G     G +  
Sbjct: 38  EYD-SQSTVDALAKEIESFGFKTLLCEQNEDLPSKLANQRLDFMFNIAEGIGTERGRESQ 96

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP- 126
           +  +LE L IPY+ S  ++ A+S+DK  +  V++   VPV    L           +   
Sbjct: 97  IPCLLESLGIPYSGSDPVSLAISLDKYLTNVVLNRENVPVPFMTLFRSEDDLRNVDMLFQ 156

Query: 127 ----PYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQ-----YVDG 174
                Y+ KP   GSS G+    + +    +  ++L+         ++           G
Sbjct: 157 DNNETYIAKPRWEGSSKGVFRDSICRNPNELKRNVLRIFERYRQPAIIEAFLPGIEITAG 216

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL----PAKIPLDIYKEVQRL 230
           I           +       P  D           +    +    P  I   + +E   +
Sbjct: 217 IVGNGSDARLLGMMKISERKPSDDGVFLYSLEHKRDWLECILYEGPEAINEKVRREAAMI 276

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELL 289
           A  A  A+  R I+R D   D    ++  ++IN  PG++P  S  P + + +G ++ +L+
Sbjct: 277 ALDAFHALELRDIARIDMRMDGQ-GQLRVIDINPLPGLSPYYSDLPILYSLSGGNYHDLI 335

Query: 290 LWMVEDA 296
             +   A
Sbjct: 336 SQISRSA 342


>gi|254459120|ref|ZP_05072542.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
 gi|207084013|gb|EDZ61303.1| D-alanine-D-alanine ligase [Campylobacterales bacterium GD 1]
          Length = 345

 Score = 79.5 bits (194), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 57/310 (18%), Positives = 111/310 (35%), Gaps = 43/310 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALE---------DAGFKVSQIDVDR----SVGLVLAHL 49
           +L GG S E E+S+ S       L          D   K   I+  +    +        
Sbjct: 5   ILFGGASFEHEISIVSAITLKGKLSGFDLSFVFCDQDHKFYLIEASKMKATTFSRGEHKK 64

Query: 50  KPDL---------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            P L                       N++HG  GEDG + ++L+   I Y      AS 
Sbjct: 65  MPQLSITNGSFSQKTMFSSVEHTGTVLNLIHGADGEDGTIASLLDFFSIKYIGPRTDASV 124

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            S DK  +K +  +  +      +++     + ++  P  +IKP + GSS+G+ +++ + 
Sbjct: 125 FSYDKRYTKWLCVAKNIKSVEYEVLSSKEHTNINIPYP-IIIKPARLGSSIGVSIVRNES 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +   L  +        +++E +++G++        A  +V    V +     +      
Sbjct: 184 ELDYALDVAF--EFDKTVIVEPFIEGVKEYNLAGFMAKGEVYFSIVEEPQKEEFLDFEKK 241

Query: 209 LNSTHVLPAK----IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                         I  ++  +++R     ++ +    + R DF    +  KV   EIN 
Sbjct: 242 YMDFSRSEKVLKAGISPELEVKLKRAFEKVYKNLFEGALIRCDFFV--VDGKVLLNEINP 299

Query: 265 QPGMTPVSIF 274
            PG     +F
Sbjct: 300 IPGSMANYLF 309


>gi|328463794|gb|EGF35346.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 252

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 62/246 (25%), Positives = 101/246 (41%), Gaps = 49/246 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DR 40
           + VL GG S+ER VS+SSG    +AL   G + + ID+                     +
Sbjct: 3   IVVLAGGRSTERNVSISSGYRITNALRQKGQQATFIDLFLGYDLEGKTVDQVFDDANTSK 62

Query: 41  SV--------GLVLAHLK------------------PDLAFNVLHGNFGEDGLVQAILEL 74
            +           +  L+                   D+ F  LHG  GE+G VQA L+L
Sbjct: 63  DLKISDAILTDADINKLRTDGSTQLFGPNVLAICKAADIVFLALHGGDGENGKVQATLDL 122

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-DSQHLISPPYVIKPL 133
             + YT SG LAS ++M+K+ SK+V+   G+         R            P V+KP 
Sbjct: 123 NNVKYTGSGPLASGITMNKVFSKEVMLYHGIQTAAFKEFKRNQNGKHTVPFDFPVVVKPT 182

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+G  +    + +   +  +  +   +  ++E++  G E + GV+   +    EI 
Sbjct: 183 SGGSSVGTHIAHNQEELENGI--ADVFRFDNSAIVEEFTPGREFSLGVVNGRAFSAIEIK 240

Query: 194 VPKSDF 199
           V    +
Sbjct: 241 VHSGWY 246


>gi|291286724|ref|YP_003503540.1| hypothetical protein Dacet_0804 [Denitrovibrio acetiphilus DSM
           12809]
 gi|290883884|gb|ADD67584.1| protein of unknown function DUF201 [Denitrovibrio acetiphilus DSM
           12809]
          Length = 329

 Score = 79.1 bits (193), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 103/308 (33%), Gaps = 23/308 (7%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLH---GNFGE 64
           S+++EV L   +   SAL   G K        ++  + AH  +PD  FN++    G   +
Sbjct: 21  SADKEV-LDQAEEIKSALISLGAKPYVTGYKNALKKLSAHKDRPDAVFNLVESVNGTDRD 79

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPSILVNRFTMDSQH 122
                        PYT S   +  +  DK+  K+V++ C +  P+               
Sbjct: 80  MYRAAMFFHNSYYPYTGSPYKSLQVLSDKVVMKRVMADCDILTPMWHKYNEPDTFFHKGE 139

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P         S   I+ +         +      N  +    E+Y+DG E    V+
Sbjct: 140 YIVKPLYEHGSFKISGESIVSMIDVDDADSKVAGMHPDNP-EIFFAERYIDGREFNISVI 198

Query: 183 G--------------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
                              D     V +   +    + +S              + ++++
Sbjct: 199 EVKGEPVLLPLAEIVFEGYDGKRKIVCEKAKWDENSEEASGTVRTFGTVSKGSRLEEKIE 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           ++           G +R D   D L  + + LE+N  P +   + F      AGYS  ++
Sbjct: 259 KITLKCWDKFNLSGYARVDIRVDAL-GEPYVLEVNANPTLAKDAGFFAACTEAGYSHNQM 317

Query: 289 LLWMVEDA 296
           +  ++  A
Sbjct: 318 IELIILAA 325


>gi|322382667|ref|ZP_08056531.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321153365|gb|EFX45788.1| D-alanine-D-alanine ligase-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 125

 Score = 79.1 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA +  +   ++Q  A   ++A+GC+G+SR D      + ++   E+N  PG T  S +P
Sbjct: 43  PANLSAEKRIKIQETAKAIYKALGCKGLSRVDMFL-QKNGRIILNEVNTLPGFTVYSRYP 101

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
            M A AG +   L+   +  A
Sbjct: 102 RMMAAAGMTLSGLIDHCITLA 122


>gi|307322537|ref|ZP_07601883.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
 gi|306891819|gb|EFN22659.1| D-alanine--D-alanine ligase [Sinorhizobium meliloti AK83]
          Length = 361

 Score = 78.8 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 61/344 (17%), Positives = 120/344 (34%), Gaps = 54/344 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + ++ GG S E + S+    A  +   +        D+  +    ++             
Sbjct: 3   VTLIYGGRSVEHDWSI----AIYNHFAEILNNARDPDISPAFVYYISRTGDLLRLALEGG 58

Query: 51  -----PDL----------------------AFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                PD                        F++L G  GEDG +QA+ +  +IP +   
Sbjct: 59  RLPKHPDFTARAETHALASLAHLLRSDGVFVFSLLQGQDGEDGQIQALAQFYDIPGSFGD 118

Query: 84  ILASALSMDKM-------RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
            +++ L+ DK        R    ++           +      +   ++ P V+KP   G
Sbjct: 119 KVSAMLATDKYLQGIVANRLCPELTPIPTVHVVQRNLELGFAKALRRLAGPCVLKPNTLG 178

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            S       +     L         H    L+++ + G E TCGV+ D            
Sbjct: 179 GSFLTEYTDELSEDRLRSYSERVALHDPSFLVQERIAGTEYTCGVLVDRHEVTALPVARI 238

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           S+   +          + +      D I   +  ++    +        R DF+ D   +
Sbjct: 239 SNPSGFLGYDQKTQKGYSVDFLDVEDTIQSRLSSISKQIAREFRVHTFGRLDFIVDEQ-Q 297

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           ++++LE+N+ PG+T  +IFP+M   AG+   +L   ++  A+  
Sbjct: 298 RIYFLELNLIPGLTAEAIFPKMLTKAGF---DLC-HLIRLAAAN 337


>gi|65319914|ref|ZP_00392873.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 110

 Score = 78.8 bits (192), Expect = 9e-13,   Method: Composition-based stats.
 Identities = 36/94 (38%), Positives = 57/94 (60%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + V+MGG+SSE++VS+ +G    + L+   +++  I ++  + L+      D A   LHG
Sbjct: 10  IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKMDLIEKAKDIDFALLALHG 69

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
            +GEDG VQ  LE L IPY+ S +L+S + MDK 
Sbjct: 70  KYGEDGTVQGTLESLGIPYSGSNMLSSGICMDKN 103


>gi|183221182|ref|YP_001839178.1| putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
 gi|189911273|ref|YP_001962828.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167775949|gb|ABZ94250.1| D-alanine--D-alanine ligase [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Ames)']
 gi|167779604|gb|ABZ97902.1| Putative D-alanine--d-alanine ligase [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 329

 Score = 78.4 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 56/281 (19%), Positives = 102/281 (36%), Gaps = 11/281 (3%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLA-----HLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
             ++  G+ V  ++    +   LA     + K  + +N + G                + 
Sbjct: 33  KTIQSLGYDVVVLNHPTEITSALAGIPKSNRKNWIVWNFIEGYLSPSREAYIPALCEYLG 92

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
             H+G  A+  ++   + K  +      +   +     +      IS P  +KP   GSS
Sbjct: 93  IPHTGSHAAVQTLTLDKYKTKLYLASFGIPTLVSQLIDSESELPRISYPLFVKPNGEGSS 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           LGI       S      Q          LL+E Y+ G E+T G+MG+             
Sbjct: 153 LGITDANVIHSKDDWDTQVPKLLETFSPLLVEPYLSGEEVTVGIMGNQGNYQVLPIAYVK 212

Query: 198 DFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  +     S  +      +P  +  +++ ++    + +G  G  R DF     + 
Sbjct: 213 TPSGVYHEGIKSKSEFLESLDFDLPNHLCSQIESISLQIAERLGSSGYLRIDFKL--ENE 270

Query: 256 KVFWLEINVQPGMTPV-SIFPEMAAYAGYSFRELLLWMVED 295
           K F+LE N  PG + + S  P +   +G S+ ELL + +E 
Sbjct: 271 KPFFLEANATPGFSHIYSTLPLLWERSGRSYSELLQYSLEL 311


>gi|330862509|emb|CBX72666.1| hypothetical protein YEW_AY05340 [Yersinia enterocolitica W22703]
          Length = 65

 Score = 78.0 bits (190), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 15/44 (34%), Positives = 24/44 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          + V+ GG S+E EVSL S K    A++   F V+ + +D+    
Sbjct: 6  VGVIFGGKSAEHEVSLQSAKNIVDAIDKEKFDVTLLGIDKQGKW 49


>gi|284517204|gb|ADB92102.1| D-alanyl-D-alanine ligase [Paenibacillus popilliae]
          Length = 65

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++A+GC+G+SR D      + ++   E+N  PG T  S +P M A AG +   L+   +
Sbjct: 1   IYKALGCKGLSRVDMFL-QENGRIILNEVNTLPGFTAYSRYPRMMAAAGMTLSGLIDHCI 59

Query: 294 EDA 296
             A
Sbjct: 60  TLA 62


>gi|189502683|ref|YP_001958400.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189498124|gb|ACE06671.1| hypothetical protein Aasi_1367 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 421

 Score = 78.0 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 63/408 (15%), Positives = 123/408 (30%), Gaps = 114/408 (27%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAG-FKVSQI---------------------DV 38
           + ++MGG S+ER +S+ SG+     L  +G +    I                     D 
Sbjct: 3   IGIIMGGFSAERHISVESGRNVYEKLASSGTYTPIPIFLTGTPLQHSLFILPIHILLKDS 62

Query: 39  DRSVGLVLAHLK-----------------------------------------PDLAFNV 57
              +   L H+                                           D  F  
Sbjct: 63  ADDIHERLKHISTTTDNSTNWTEEPAIDSIIKKYVGSFTMQPTAITYQELAHLVDSVFIA 122

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
           LHG  GEDG +QAILE   +PY  SG+  ++L++DK  + + +   G+ V    +V    
Sbjct: 123 LHGRPGEDGTLQAILEQHGLPYNGSGVTTTSLTIDKFATNRFLHKHGIYVANQAVVTIDQ 182

Query: 118 MDS---------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +         +     P+++KP+  G S+ +  I+    +          +      +
Sbjct: 183 WKNNTPATIETIEATFKYPFIVKPVDDGCSVAVFKIQNKDMLIAYAENIFRADSNQPTNL 242

Query: 169 EQYVDGIE----------------------------------------LTCGVMGDASLD 188
            Q +                                                +   + + 
Sbjct: 243 TQVLGLKPNAAFPNYQQFLVEDLIEKGTATHFLEITGGLLTHLDEQGNRQYEMFEPSEVV 302

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
            T   +   + +      +   +         L I  +V+       Q +   G +R D 
Sbjct: 303 ATGDILSLEEKFLAGEGQNITPARFHPDPTTNLAISTKVKEDLQKVAQLVNIEGYARIDA 362

Query: 249 LFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           +       +  + +EIN  P +TP +      A  GY+  + +  +++
Sbjct: 363 MVKIYPTHIETWIIEINTLPALTPATCIFHQCAINGYTPFDFIHTIIQ 410


>gi|88812924|ref|ZP_01128168.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
 gi|88789846|gb|EAR20969.1| hypothetical protein NB231_00250 [Nitrococcus mobilis Nb-231]
          Length = 348

 Score = 77.2 bits (188), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 72/306 (23%), Positives = 119/306 (38%), Gaps = 29/306 (9%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG----LVQAI 71
           L +     +AL   GF  + +D   ++   L    P LAFN+    F  D      + A+
Sbjct: 42  LKTA---LAAL--EGFTFTYLDDHTTLLDDLRQRPPSLAFNLCDVGFRNDTARELNIPAL 96

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK 131
           LE+L I Y+ +  +  +L+ DK   + V  S G+PV   + V+            P +IK
Sbjct: 97  LEILNISYSGADPVGMSLATDKSIVRVVARSLGIPVPNEMFVDLGADPLVLPALYPALIK 156

Query: 132 PLKGGSSLGI---IVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           P     S GI    V          L   +      + LI+ ++ G E T G++G+AS  
Sbjct: 157 PNFSDGSFGITADCVAHDAAEAERYLHWLAGELERPEALIQDFLTGTEYTVGLIGNASQG 216

Query: 189 VTEIAV------------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA-- 234
            T +              P    Y+ +    S     +   +  +D     +   +    
Sbjct: 217 FTYLPPLEVDYSRLDPELPPILSYASKADPDSPYWQKLRFRRARIDEVTRGRLYEYCTLL 276

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            + +G R   R DF       +   LE+N  P          MA+YAGYS+ +LL  ++ 
Sbjct: 277 FKRLGLRDYGRFDFR-AGADGEPRLLEVNHNPAWAWDGKLSLMASYAGYSYSDLLRLIL- 334

Query: 295 DASCLR 300
            A+ +R
Sbjct: 335 -AAAMR 339


>gi|90022373|ref|YP_528200.1| carbamoyl phosphate synthase large subunit [Saccharophagus
           degradans 2-40]
 gi|89951973|gb|ABD81988.1| carbamoyl-phosphate synthase large subunit [Saccharophagus
           degradans 2-40]
          Length = 1077

 Score = 76.8 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWETVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +LE   +    +   A   + D+ R  Q +   G+    +  
Sbjct: 89  TMGGQTALNCALALHKHGVLEEFGVELIGATEDAIDKAEDRNRFDQAMKKIGLECARAKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +               P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 VHTMEEANQVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPEDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   +AG++   +         D D              V  ++   KP       
Sbjct: 582 VHAALASREAGYEAIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHREKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLANALEAEGVPIIGTSPEAIDRAEDRERFQQMIQRLELLQPPNAIVRSTEEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                +  P V++P        + ++  +  +   + ++   +    +L++ +  + IE+
Sbjct: 702 HIAPTVGYPLVVRPSYVLGGRAMEIVYTENELRTYMREAVQASEDSPVLLDHFLNNAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  E++       + 
Sbjct: 762 DIDAVSDGERVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPEDVQDEMREQVRKMARE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+      +     +++ +E+N +   T     P ++   G S  ++
Sbjct: 819 LGVIGLMNVQLAY--QDGRIYVIEVNPRGSRT----VPFVSKCIGVSLAKI 863


>gi|313619832|gb|EFR91421.1| D-alanine--D-alanine ligase [Listeria innocua FSL S4-378]
          Length = 274

 Score = 75.7 bits (184), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 50/204 (24%), Positives = 80/204 (39%), Gaps = 52/204 (25%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPD------- 52
           +L GG S+E EVSL +  +  +AL+   F+   I +      V   L   K D       
Sbjct: 7   LLYGGKSAEHEVSLQTAFSVINALDLEKFEAEPIYITNEGEWVQGPLLSGKLDFVEQLRF 66

Query: 53  ---------------------------------LAFNVLHGNFGEDGLVQAILELLEIPY 79
                                            + F +LHG  GEDG VQ + E+L IPY
Sbjct: 67  SATDRVKLATAESEKSEGEAISPAVLEADGQETVVFPLLHGPNGEDGTVQGLFEVLNIPY 126

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPV---------CPSILVNRFTMDSQHLISPPYVI 130
             +G+LAS+ +MDK+  K++ +  G+P                     + + +++ P  +
Sbjct: 127 VGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAVRLIDWKNYQEEMITEMEEVLTYPVFV 186

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDL 154
           KP   GSS+GI        +   +
Sbjct: 187 KPANLGSSVGISKATNKTELIEAM 210


>gi|325914335|ref|ZP_08176682.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
 gi|325539343|gb|EGD10992.1| ATP-grasp enzyme, D-alanine-D-alanine ligase [Xanthomonas
           vesicatoria ATCC 35937]
          Length = 157

 Score = 75.7 bits (184), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD 52
           + ++ GG S+E EVSL S +    AL+   F+   I +D+     L+   PD
Sbjct: 81  VGLIFGGKSAEHEVSLQSARNILDALDPQRFEPVLIGIDKQGQWHLSA--PD 130


>gi|300361814|ref|ZP_07057991.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           JV-V03]
 gi|300354433|gb|EFJ70304.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           JV-V03]
          Length = 1062

 Score = 75.3 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIIQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLEKHGVKILGTTVKDLNRAEDRELFDQIIKKLQLNQPKGLTATTHDGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     D+ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSRT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|21321301|dbj|BAB97388.1| D-alanine-D-alanine ligase [Pectobacterium chrysanthemi]
          Length = 368

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/296 (21%), Positives = 118/296 (39%), Gaps = 20/296 (6%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
           ER +      +  SA  D G    +I+   +          +  F   HG +GEDG +Q 
Sbjct: 57  ERGI-----TSIESAFIDLGLNYKKIESTDNNLQY-EINNHNFVFIYAHGEYGEDGRLQG 110

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLIS 125
            L+ ++ PY  SG+LASA+  DK++ K +++   V                       + 
Sbjct: 111 FLDYIDKPYPGSGVLASAVCCDKLKFKYLMTGSSVNTPNFYELNIHDSYSDVHKKALCLQ 170

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P + K   GGSSLGI  I  D+ +        + N  ++  +E+++ G  ++ G +   
Sbjct: 171 YPIMAKERCGGSSLGITYISNDEDLHT--WYEKNKNEINKYFLEKFISGRIISVGFVQMI 228

Query: 186 SLDVTEIAVPKSDFYSYEL------KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
              +    +      +Y                 +        I ++++  A  A +   
Sbjct: 229 EGVLILPTLETVTNSNYYDAELKIGHSHHDVKYILNSFSSKEYIDRKIKETAIKAFEHAA 288

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           C+G+ R   L    +  +F LEIN  PG++  S F +M    G+S+ EL++  +  
Sbjct: 289 CQGVGRV-DLIIDDNDDIFILEINTIPGISKNSNFTKMFTSLGFSYNELVIAFIRT 343


>gi|220934153|ref|YP_002513052.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219995463|gb|ACL72065.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 1072

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     ++V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADAVYIEPVEWKTVARIIEREKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L+   +    +   A  ++ D+ R +  ++  G+    +  
Sbjct: 89  TMGGQTALNCALDLAKHGVLKKHNVELIGASEDAIDMAEDRERFRDAMTEIGLESPMAFV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  I  P +I+P       G  +          + +    +  +++ +E+
Sbjct: 149 VNTWDEAQEVQPKIGFPVIIRPSFTMGGSGGGIAYNRDEYEEIVKRGLDLSPTNEVQVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFAVNPDDGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPRGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   +       +
Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTTPDSIDLAEDRERFQQLIDRLELVQPPNRTARSVEDAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++  ++ +   +  +   ++   +L+++++D  +E+
Sbjct: 702 SKAEEIGYPVVVRPSYVLGGRAMEIVYNEEDLRRYMRSAVQVSNDAPVLLDRFLDDAVEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +   I  E++         
Sbjct: 762 DVDAICDGEEVLIGGVMQHIEQAG---VHSGDSACSLPPYSLDKKIQDELREQVRKMAFG 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+  + F       KV+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LKVVGLMNTQFAV--QGDKVYVLEVNPRASRT----VPFVSKAIGKPLAKIAAR 866


>gi|269927660|gb|ACZ53133.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927664|gb|ACZ53135.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927602|gb|ACZ53104.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927620|gb|ACZ53113.1| D-alanine-D-alanine ligase [Lactobacillus reuteri mlc3]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927476|gb|ACZ53041.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927458|gb|ACZ53032.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927508|gb|ACZ53057.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927510|gb|ACZ53058.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927512|gb|ACZ53059.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927534|gb|ACZ53070.1| D-alanine-D-alanine ligase [Lactobacillus reuteri DSM 20016]
 gi|269927540|gb|ACZ53073.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927590|gb|ACZ53098.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927592|gb|ACZ53099.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927612|gb|ACZ53109.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927622|gb|ACZ53114.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927628|gb|ACZ53117.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927666|gb|ACZ53136.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927454|gb|ACZ53030.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927466|gb|ACZ53036.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927468|gb|ACZ53037.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927478|gb|ACZ53042.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927484|gb|ACZ53045.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927486|gb|ACZ53046.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927496|gb|ACZ53051.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927506|gb|ACZ53056.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927514|gb|ACZ53060.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927522|gb|ACZ53064.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927524|gb|ACZ53065.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927526|gb|ACZ53066.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927532|gb|ACZ53069.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927546|gb|ACZ53076.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927548|gb|ACZ53077.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927550|gb|ACZ53078.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927554|gb|ACZ53080.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927562|gb|ACZ53084.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927566|gb|ACZ53086.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927572|gb|ACZ53089.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927578|gb|ACZ53092.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927582|gb|ACZ53094.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927586|gb|ACZ53096.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927588|gb|ACZ53097.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927606|gb|ACZ53106.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927608|gb|ACZ53107.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927610|gb|ACZ53108.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927614|gb|ACZ53110.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927616|gb|ACZ53111.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927624|gb|ACZ53115.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927626|gb|ACZ53116.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927636|gb|ACZ53121.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927638|gb|ACZ53122.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927646|gb|ACZ53126.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927648|gb|ACZ53127.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927650|gb|ACZ53128.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927668|gb|ACZ53137.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927670|gb|ACZ53138.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927672|gb|ACZ53139.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927678|gb|ACZ53142.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927680|gb|ACZ53143.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|269927452|gb|ACZ53029.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927456|gb|ACZ53031.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927460|gb|ACZ53033.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927462|gb|ACZ53034.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927464|gb|ACZ53035.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927470|gb|ACZ53038.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927472|gb|ACZ53039.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927474|gb|ACZ53040.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927480|gb|ACZ53043.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927482|gb|ACZ53044.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927488|gb|ACZ53047.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927490|gb|ACZ53048.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927492|gb|ACZ53049.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927494|gb|ACZ53050.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927498|gb|ACZ53052.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927500|gb|ACZ53053.1| D-alanine-D-alanine ligase [Lactobacillus reuteri ATCC 53608]
 gi|269927502|gb|ACZ53054.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927504|gb|ACZ53055.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927516|gb|ACZ53061.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927518|gb|ACZ53062.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927520|gb|ACZ53063.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927528|gb|ACZ53067.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927530|gb|ACZ53068.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927536|gb|ACZ53071.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927538|gb|ACZ53072.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927542|gb|ACZ53074.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927544|gb|ACZ53075.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927552|gb|ACZ53079.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927556|gb|ACZ53081.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927558|gb|ACZ53082.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927560|gb|ACZ53083.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927564|gb|ACZ53085.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927568|gb|ACZ53087.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927570|gb|ACZ53088.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927574|gb|ACZ53090.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927576|gb|ACZ53091.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927580|gb|ACZ53093.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927584|gb|ACZ53095.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927594|gb|ACZ53100.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927596|gb|ACZ53101.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927598|gb|ACZ53102.1| D-alanine-D-alanine ligase [Lactobacillus reuteri lpuph]
 gi|269927600|gb|ACZ53103.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927604|gb|ACZ53105.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927618|gb|ACZ53112.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927630|gb|ACZ53118.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927632|gb|ACZ53119.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927634|gb|ACZ53120.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927640|gb|ACZ53123.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927642|gb|ACZ53124.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927644|gb|ACZ53125.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927652|gb|ACZ53129.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927654|gb|ACZ53130.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927656|gb|ACZ53131.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927658|gb|ACZ53132.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927662|gb|ACZ53134.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927674|gb|ACZ53140.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927676|gb|ACZ53141.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
 gi|269927682|gb|ACZ53144.1| D-alanine-D-alanine ligase [Lactobacillus reuteri]
          Length = 210

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 66/159 (41%), Gaps = 5/159 (3%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
            +KP K GSS+GI  +   +     L  +  +++   +              +  +  + 
Sbjct: 53  FVKPAKQGSSVGIHRVTNAEEYEKALDDAFKYDYKILVEQGIANPQEIEISILGNEHPIA 112

Query: 189 VTEIAVPKSDFYSYELKYSSLNS----THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
               AV       +    +           LP K+P  +  E+  +A  A++A+G +G++
Sbjct: 113 SKLGAVRVPKDDPFYDYENKFVDASGVVFELPVKLPQYLVDEITDMALKAYKALGMKGMA 172

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           R DFL D  +   +  E N  PG T +S++P+M   +G 
Sbjct: 173 RIDFLVD-SNNVPYLGEPNTLPGFTNISLYPQMWEVSGI 210


>gi|480501|pir||S36974 hypothetical protein 8 (atpB 5' region) - Synechococcus sp.  (PCC
           6716) (fragment)
 gi|49229|emb|CAA49884.1| unnamed protein product [Synechococcus sp.]
          Length = 218

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 51/191 (26%), Positives = 77/191 (40%), Gaps = 37/191 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA----LEDAGFKVSQIDVDRSVGLVLAH-------- 48
           + +L GG S E EVS+ S  A A A    L    ++V  I + +                
Sbjct: 6   VGLLFGGRSREHEVSVVSAAAIAQAFADPLNGDRYEVVPIYIQKDGRWRCTETVSAPAPS 65

Query: 49  -------------LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                           D+ F +LHG  GEDG +Q +LE+++ PY  SG+ ASA+ MDK+ 
Sbjct: 66  LDNQSLWSFPAVAETIDVWFPILHGPNGEDGTIQGLLEMMQRPYVGSGVAASAIGMDKIL 125

Query: 96  SKQVVSSCGVPVCPSI------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            K    + G+P    +               +     +  +  P  +KP   GSS+GI  
Sbjct: 126 MKTFFGAVGLPQVQYVAISRSELWSDPCRYRQVCDRIETELGYPCFVKPANLGSSVGISK 185

Query: 144 IKKDQSIPLDL 154
            K  Q +   L
Sbjct: 186 AKNRQQLTTAL 196


>gi|167041454|gb|ABZ06205.1| putative D-ala D-ala ligase [uncultured marine microorganism
           HF4000_007D16]
          Length = 357

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 53/290 (18%), Positives = 102/290 (35%), Gaps = 20/290 (6%)

Query: 22  CASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDG-----LVQAILELL 75
             + L      VS  +++  +    LA  KPDL F+   G            +   LEL 
Sbjct: 68  ILNILSKRYRNVSITEINTENDLKKLALRKPDLVFS---GVKYFYFDSGIIWLNDYLELY 124

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPL 133
           +I Y  S   A     DK  +K+++    +              ++  I    P  IKPL
Sbjct: 125 DISYIASNREALHNEHDKSIAKKIMQKANIKTADFFTTEPGEHLTEMSIPIAFPLFIKPL 184

Query: 134 KGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            GG S G+               +         + L+E Y+ G E +  ++ D S    +
Sbjct: 185 TGGDSRGVDKNSIVYDFLSFQAKVLDIKRKQNLRSLVETYLPGKEYSVSILQDNSNGNLK 244

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK------IPLDIYKEVQRLAFLAHQAIGCRGISR 245
               +         +  L+       +          IY ++  L+  A +A+G + + R
Sbjct: 245 AMPIEIVVDKNINGHCILDYDIKKNDQEKVIAVTDNKIYNQLSDLSKDAFKALGGKSLGR 304

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            D   +  +    ++E N+ PG+    ++       G  + +++L + + 
Sbjct: 305 IDIKMN-HNGVPHFIEANLMPGLRNGYLYRACLFNLGMGYEQMILTIADT 353


>gi|186474632|ref|YP_001863603.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
 gi|184198591|gb|ACC76553.1| D-alanine--D-alanine ligase [Burkholderia phymatum STM815]
          Length = 357

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 69/332 (20%), Positives = 123/332 (37%), Gaps = 42/332 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGF----KVSQIDVDRSVGL--VLAHLKPD-- 52
           +++  GG S+E   SL S +     + +        +  +DV+  V +    A L  D  
Sbjct: 7   ISIAFGGKSTEHRASLESFRHVIGEIHNDDSVEIEDIYYVDVEGRVAVTPFQAGLPVDSY 66

Query: 53  ---------------------LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                                   N+L+GNFGEDG +Q    +  +P +   +LA++L+M
Sbjct: 67  VRDREYMPYWAALGRMVNAGTFVLNLLYGNFGEDGKIQGAAAIASVPGSFGPVLAASLAM 126

Query: 92  DKMRSKQVV--------SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            K    Q +            + +    L    T           V+KP   G+SL    
Sbjct: 127 SKYHMNQYIASAHPVVQIPDTLLLRECDLPEASTRIFDRFHGMEIVVKPNSLGASLFTNR 186

Query: 144 IKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              D      +  +    + +    L+++YV G E + G +      +   AV      +
Sbjct: 187 YLVDPECIESIKTNLAEIFEYDANALVQRYVSGTEYSIGCLQKNETVMVLPAVRIETEGA 246

Query: 202 YELKYSSLNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
           +        S       I  +  + K +  L+    +++  R + R DF+  P    +F+
Sbjct: 247 FFGHEEKHRSGKANEIIIMEESPVVKSLGDLSIEIFKSVDFRNMCRFDFIVSPEE-AIFF 305

Query: 260 LEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           LE N  PG+   SIFP+M A +  +  E +  
Sbjct: 306 LEANTIPGLMRNSIFPKMLAASDITLGEAISQ 337


>gi|84387437|ref|ZP_00990456.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
 gi|84377690|gb|EAP94554.1| D-ala D-ala ligase [Vibrio splendidus 12B01]
          Length = 384

 Score = 74.9 bits (182), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 65/342 (19%), Positives = 123/342 (35%), Gaps = 55/342 (16%)

Query: 1   MAVLMGGISSEREV--------SLSS-------GKACASALEDAGFKVSQIDV---DRSV 42
           +AV+ GG  S  +V        S  S           A+AL ++GF+   +DV   D  +
Sbjct: 20  IAVIHGGDKS--QVGSYIFENLSPRSTKTYEPVAHDIANALRESGFE--LVDVLAEDIDL 75

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVV 100
              L   K DL      G  G D +    + LE+L +PY     + + +  +K   K  +
Sbjct: 76  AKQLESKKIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEI 135

Query: 101 SSCGVPVCPSILVNRFTMDS---------QHLISPP--YVIKPLKGGSSLGIIVIKKDQS 149
            + G+P  P I +                      P  +V+KP+ G +S+ +  + +   
Sbjct: 136 KAAGIPTAPFITIGIDEDFDSESNQSALDDIARRFPQGFVVKPVSGRASIHVYPVFERSE 195

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------- 198
           +   ++        + ++IE Y+ G E    V G+       +                 
Sbjct: 196 L-KAVVNKVRNATNNIVMIEPYLSGREFVVAVAGEYVFKQGALTQSNQPLAFSVTERVLK 254

Query: 199 --FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                +        +   L A     +  E+  +    ++ +G + + R D   D     
Sbjct: 255 ADEPIFTSMDVKPITQDRLVAVNDQTLRTELAEIGQKIYRQLGLQTLVRVDLRMDDE-GS 313

Query: 257 VFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
           ++ LE N +P +     + VS+     A  G S+ +L+  +V
Sbjct: 314 LYVLETNPKPDLKRPEGSKVSLVCHDLAREGMSYTDLIQSLV 355


>gi|225165015|ref|ZP_03727220.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2]
 gi|224800369|gb|EEG18760.1| D-alanine--D-alanine ligase [Opitutaceae bacterium TAV2]
          Length = 83

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 12/71 (16%)

Query: 238 IGCRGISRSDFLFDPL------------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              R  +R DF+                +  ++ LEIN  PGM   S+ P  A  AG  F
Sbjct: 5   CQVRDYARVDFILCDTPASPLSACEQNGNNSLYLLEINTLPGMKETSLLPMSARCAGLDF 64

Query: 286 RELLLWMVEDA 296
             L+  +V  A
Sbjct: 65  TALVRELVRPA 75


>gi|329667282|gb|AEB93230.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii
           DPC 6026]
          Length = 1062

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLQDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKGELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++  ++  +       + C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|227890076|ref|ZP_04007881.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           ATCC 33200]
 gi|227849520|gb|EEJ59606.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           ATCC 33200]
          Length = 1062

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++  ++  +       + C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|187235564|gb|ACD01995.1| putative D-alanine-D-alanine ligase [Clostridium septicum]
          Length = 211

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 70/216 (32%), Positives = 114/216 (52%), Gaps = 8/216 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN-- 114
            LHG FGEDG VQ++L+ L+IPY+    L+SAL MDK  +K+++ S  +     + V   
Sbjct: 1   ALHGKFGEDGTVQSVLQTLDIPYSGCEPLSSALCMDKDLTKRILKSNNIRTARWLNVRSV 60

Query: 115 -RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                D    +  P  IKP  GGSS+    I K + +   + +   W   ++++IE+++ 
Sbjct: 61  EEIDYDKIEEMKYPVFIKPTNGGSSVATFKITKKEDVEEAVREGLKW--DNEVMIEEFIK 118

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G E+TC V     +       PK+DF+ Y  KYS   +  V+  ++   ++KEV+++A  
Sbjct: 119 GEEITCPVFKG-EMFPVIAIRPKTDFFDYTQKYSGDGAEEVI-IELEEKLHKEVEQMALD 176

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            ++A+ C   SR D +     R  + LE+N  PGMT
Sbjct: 177 TYKALKCSVYSRIDMIVTE-DRTPYILELNTFPGMT 211


>gi|42519201|ref|NP_965131.1| carbamoyl phosphate synthase large subunit [Lactobacillus johnsonii
           NCC 533]
 gi|81667751|sp|Q74J34|CARB_LACJO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|41583488|gb|AAS09097.1| carbamoylphosphate synthase large subunit [Lactobacillus johnsonii
           NCC 533]
          Length = 1062

 Score = 74.5 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++  ++  +       + C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEEALEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|294101200|ref|YP_003553058.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
 gi|293616180|gb|ADE56334.1| D-alanine--D-alanine ligase [Aminobacterium colombiense DSM 12261]
          Length = 350

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 104/298 (34%), Gaps = 27/298 (9%)

Query: 26  LEDAGFKVSQIDV-------DRSVGLVLAHLKPDLAFNVLHGNFGE---DGLVQAILELL 75
           L   G+ +  +D+        + +   +   +P   FN+  G   E   +     ILE  
Sbjct: 46  LSSQGYSIYNLDIFPADLADPKHLVQRINEYQPLCVFNLFEGFGSEPWLEASFCEILEKN 105

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC-PSILVNRFTMDSQHLISPPYVIKPLK 134
            + +T +   A  L +DK    Q + + G+PV     L  + T+ +   IS P  IKP +
Sbjct: 106 NLTFTGNPSGALRLCIDKHTLHQQLKTAGIPVPLSYFLKGKETLGTLENISFPLFIKPCR 165

Query: 135 GGSSLGIIVIK---KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              S+GI        ++ +   + +  +      +LI++++ G E     + +       
Sbjct: 166 EDGSVGIDKKSLVFNEEELQESVTEKLAKFPDG-ILIQEFLSGPEYCVSFVDNGPFSPVG 224

Query: 192 IAVPKSDFYSYELKY--SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI--------GCR 241
           +       Y     Y           P         ++          +        GC+
Sbjct: 225 LWTLDYSRYPECPAYLSYDAKWNENSPEWNLWPEEIDLDYSLKETILHMASRAALVAGCK 284

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G  R D         +F ++IN  P +T  S         G ++ +L++ +++ A   
Sbjct: 285 GYFRVDLR--ENQGHLFVMDINPNPALTRDSGMARQYMQKGKTYEQLVMKILQLAILN 340


>gi|327334539|gb|EGE76250.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL097PA1]
          Length = 139

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D 
Sbjct: 32  IRPVGGVYDYSAMYTGGETRLTAPADISDTAAQTATAMARVVQKELDFSGISRVDAIVDE 91

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            S +  +LE    PGMT  S+ P     AG    E+   +V+D
Sbjct: 92  -SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 133


>gi|15603370|ref|NP_246444.1| carbamoyl phosphate synthase large subunit [Pasteurella multocida
           subsp. multocida str. Pm70]
 gi|22095528|sp|Q9CKV0|CARB_PASMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12721891|gb|AAK03589.1| CarB [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 1068

 Score = 74.1 bits (180), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D            R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIEWRTVEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGAKEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTLEEAWAAQSEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL +AGF+   +         D D S  L    L  +    ++H            G   
Sbjct: 582 ALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPHGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++ +          P   +       +     
Sbjct: 642 LKLANDLHANGVNIIGTSADSIDAAEDRERFQQILHKLHLKQPTNRTARNAEEAVKLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++     +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELQRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  +  ++  E++R       A+G +G
Sbjct: 762 CDGAEVVIGGIMQHIEQAGIHSG---DSACSLPPYSLSQEVQDEIRRQTAEMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861


>gi|289207884|ref|YP_003459950.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           K90mix]
 gi|288943515|gb|ADC71214.1| carbamoyl-phosphate synthase, large subunit [Thioalkalivibrio sp.
           K90mix]
          Length = 1077

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVEWETVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D   + +LE   +    +   A  ++ D+   K  ++  G+    ++ 
Sbjct: 89  TMGGQTALNCALDLSREGVLEKYGVEMIGANEAAIDMAEDRDHFKAAMADIGLDTPTAML 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  I  P +I+P       G  +    +     +      +  +Q+L+E+
Sbjct: 149 AHSWEEAQEIQPKIGFPVIIRPSFTLGGSGGGIAYNREEFEYIVKNGLDLSPVNQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
              G +     +     D   I     +     +      +          +        
Sbjct: 209 SALGWKEFEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLRKIGVETGGSNVQFAINPENGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 89/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   +  ++   +         D D              V  V+   KP       
Sbjct: 582 VHAALAMREDKYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVETEKPVGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ ++         P   +        
Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDSIDLAEDRERFQALLHKLGLKQPPNRTARSEEEAE 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + +++  + +   +  + S ++   +L+++++D  IE+
Sbjct: 702 KLADEIGYPLVVRPSYVLGGRAMEIVRDREDLRSYMQNAVSVSNDAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  + L++   +          
Sbjct: 762 DVDAICDGENVIIGGIMEHIEQAG---VHSGDSACSLPPFSLSLELQDAMVEQVRKMALG 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+  + F        ++ LE+N +   T     P ++   G    ++   
Sbjct: 819 LKVVGLMNTQFAI--KGDDIYVLEVNPRASRT----VPYVSKAVGRPLAKIAAR 866


>gi|6552726|gb|AAF16526.1|AF191301_2 ADP-forming, carbamate-phosphorylating [Medicago sativa]
          Length = 1072

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +LE   +    +   A  ++ D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINMAEDRNLFDQAMKRIGLSCARAKI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      +       P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 VHTLEEAKEAPKEFGFPCIIRPSFTMGGSGGGIAYNWDEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 96/294 (32%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59
             +AL   + G++   +         D D S  L    +  +    ++H           
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVHKEKPVGVIVQF 641

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEAEGVPIIGTSPDAIDKAEDRERFQQMINKLGLLQPPNAIVRSLEEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
            +   +  P V++P        + ++ K+  +   +  +   +    +L++ +  + IE+
Sbjct: 702 LAADKVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  +++ +       
Sbjct: 762 DIDSVSDGKQVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPADVQDDMREIVKKMAIE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  +   +     K++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNTQLAY--QDGKIYVIEVNPRASRT----VPFVSKCIGVSLAKVAAR 866


>gi|314965741|gb|EFT09840.1| conserved domain protein [Propionibacterium acnes HL082PA2]
 gi|314982883|gb|EFT26975.1| conserved domain protein [Propionibacterium acnes HL110PA3]
 gi|315091192|gb|EFT63168.1| conserved domain protein [Propionibacterium acnes HL110PA4]
 gi|315094423|gb|EFT66399.1| conserved domain protein [Propionibacterium acnes HL060PA1]
 gi|327328919|gb|EGE70679.1| D-alanine--D-alanine ligase B [Propionibacterium acnes HL103PA1]
          Length = 123

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 1/103 (0%)

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D 
Sbjct: 16  IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            S +  +LE    PGMT  S+ P     AG    E+   +V+D
Sbjct: 76  -SGRPVFLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|254787220|ref|YP_003074649.1| carbamoyl phosphate synthase large subunit [Teredinibacter turnerae
           T7901]
 gi|237686984|gb|ACR14248.1| carbamoyl-phosphate synthase, large subunit [Teredinibacter
           turnerae T7901]
          Length = 1073

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +     +LE   +    +   A   + D+ R  + + + G+    +  
Sbjct: 89  TMGGQTALNCALELHANGVLEKFNVELIGATQDAIDKAEDRDRFDKAMKNIGLECARAKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +       P +I+P       G  +    +      L+    +  ++LLI++
Sbjct: 149 VHTMEEANEVPKEFGFPVIIRPSFTMGGSGGGIAYNWEEFEEICLRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFAVNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAAREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHKEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLANALAAEGVPIIGTSPEAIDRAEDRERFQQMIHRLGLLQPPNAIVRSTEEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                +  P V++P        + ++     +   + ++   +    +L++ +  + IE+
Sbjct: 702 SVAKEVGYPLVVRPSYVLGGRAMEIVYTKSELANYMREAVQASEDAPVLLDHFLNNAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  E++         
Sbjct: 762 DIDAVSDGKDVVIGAIMQHIEQCG---VHSGDSACSLPPYSLPEDVQNEMREQVRKMAVE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+      +     K++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNVQLAY--QDGKIYVIEVNPRGSRT----VPFVSKCIGVSLAKVAAR 866


>gi|268319404|ref|YP_003293060.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii
           FI9785]
 gi|262397779|emb|CAX66793.1| carbamoyl-phosphate synthase large chain [Lactobacillus johnsonii
           FI9785]
          Length = 1062

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGIIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLKDHGIKILGTSVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++  ++  +       + C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQNFTDEVKDKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALSLAKTGILDELNIELLGTRLSSIEQAEDREKFKELCKELGEPVPPSTT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +     +++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEESLEFGDRIGYPIIVRPAFTMGGTGGGICNNHEELAKIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|325911955|ref|ZP_08174358.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 143-D]
 gi|325476257|gb|EGC79420.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 143-D]
          Length = 1055

 Score = 73.8 bits (179), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|309806001|ref|ZP_07700027.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 03V1-b]
 gi|308167604|gb|EFO69757.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 03V1-b]
          Length = 1055

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAMKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAIYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|290646|gb|AAA24785.1| vanB2 ORF [Enterococcus faecalis]
          Length = 210

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 55/213 (25%), Positives = 95/213 (44%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    ++++        
Sbjct: 1   EDGCIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDKGDKPEAGA 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           ++ P  +KP + GSS G+  +   + +   +  +    +  ++LIEQ + G E+ C VMG
Sbjct: 61  LTYPVFVKPARSGSSFGVTKVNGTEELNAAIEAAG--QYDGKILIEQAISGCEVGCAVMG 118

Query: 184 DASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    +                    E +  S N+   +PA IP++    VQ  A   ++
Sbjct: 119 NEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQETAKKVYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D         +   E+N  PG T
Sbjct: 179 VLGCRGLARVDLFL-QEDGGIVLNEVNTLPGFT 210


>gi|311110631|ref|ZP_07712028.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           MV-22]
 gi|311065785|gb|EFQ46125.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           MV-22]
          Length = 889

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 404 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 463

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 464 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 523

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 524 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 583

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     D+ +++  +       + C
Sbjct: 584 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 640

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 641 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 687



 Score = 36.4 bits (82), Expect = 4.9,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 46/150 (30%), Gaps = 5/150 (3%)

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +    + +          +   + LIE+ + G             D   + V   + +  
Sbjct: 8   ICHSHEELAEIAKNGLELSPVTECLIEKSIAG-YKEIEFEVMRDHDDNAMIVCCMENFDP 66

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
              ++  +        +    Y+ ++  +    +A+   G        DP S     +E+
Sbjct: 67  VGIHTGDSIVFSPSQTLSDKEYQMLRDCSLRLIRALKIEGGCNVQLALDPNSFDYDVIEV 126

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           N  P ++  S     +   GY   ++   +
Sbjct: 127 N--PRVSRSS--ALASKATGYPIAKMAAKI 152


>gi|282851820|ref|ZP_06261183.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           224-1]
 gi|282557062|gb|EFB62661.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           224-1]
          Length = 1062

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     D+ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|116095308|gb|ABJ60460.1| carbamoyl-phosphate synthase large subunit [Lactobacillus gasseri
           ATCC 33323]
          Length = 1071

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 586 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 645

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 646 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 705

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 706 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 765

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     D+ +++  +       + C
Sbjct: 766 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 822

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 823 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 869



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 38  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 97

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 98  TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 157

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 158 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 217

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 218 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 276

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 277 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 332

Query: 291 WM 292
            +
Sbjct: 333 KI 334


>gi|162139889|ref|YP_814898.2| carbamoyl phosphate synthase large subunit [Lactobacillus gasseri
           ATCC 33323]
 gi|238853376|ref|ZP_04643755.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           202-4]
 gi|238833948|gb|EEQ26206.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus gasseri
           202-4]
          Length = 1062

 Score = 73.4 bits (178), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   +             P   +   +   + +
Sbjct: 637 QTSINLAAGLERHGVKILGTTVKDLNRAEDRELFDQIIKKLKLNQPKGLTATTHEGVIKA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 AEELGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     D+ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDDVKEKIMDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELNIELLGTKLSSIEQAEDREKFKELCKKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHSHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|51921843|gb|AAU14063.1| VanB [Enterococcus faecalis]
          Length = 271

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 61/271 (22%), Positives = 106/271 (39%), Gaps = 43/271 (15%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHL----------------------------------K 50
            +    F    I + ++    L                                     +
Sbjct: 1   NINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFSPDRKTHGLLVMKEREYETRR 60

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V   
Sbjct: 61  IDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEF 120

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++ +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ
Sbjct: 121 QMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILIEQ 178

Query: 171 YVDGIELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + G E+ C VMG+    +                    E +  S N+  ++PA IP++ 
Sbjct: 179 AISGCEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEE 238

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              VQ  A   ++ +GCRG++R D       
Sbjct: 239 RNRVQETAKKVYRVLGCRGLARVDLFLQEDG 269


>gi|22095501|sp|Q8RSS3|CARB_HALER RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18958215|emb|CAD24315.1| carbamoylphosphate synthetase large subunit [Halomonas eurihalina]
          Length = 1076

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +LE   +    +   A  ++ D+    Q +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINMAEDRDLFDQAMKRIGLECPKAKV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHSMDEAWQIQSELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQNMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVDPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 40/307 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  +    KP       
Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T    +  A   ++ +          P   +        
Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQHMVDKLGLKQPANATARSXEEAF 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++     +   +  +   ++   +L++ +    IE+
Sbjct: 702 AKAEAIGYPXVVRPSYVLGGXAMEIVYDASELENYMTHAVKVSNDSPVLLDHFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P ++  E++         
Sbjct: 762 DIDAVSDGHQVVIGGIMQHIEQAG---VHSGDSACALPPYSLPAEVQDEMRDQVKRMAVE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAA-YAGYSFRE- 287
           +G +G+      +     +++ +E+N       P ++     S+    A   AG S  E 
Sbjct: 819 LGVKGLMNVQLAW--QDGEIYVIEVNPRASRTVPFVSKCVGTSLAQVAARCMAGISLAEQ 876

Query: 288 -LLLWMV 293
             +  +V
Sbjct: 877 GFVEEIV 883


>gi|93005659|ref|YP_580096.1| carbamoyl-phosphate synthase, large subunit [Psychrobacter
           cryohalolentis K5]
 gi|92393337|gb|ABE74612.1| carbamoyl-phosphate synthase large subunit [Psychrobacter
           cryohalolentis K5]
          Length = 1112

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              ++V  ++A  +PD    
Sbjct: 57  SGAQACKALKEEGYRVILVNSNPATIMTDPTMADATYIEPITWQTVEQIIAKERPDAILP 116

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +     +L         +   +  ++ D+    + +   G+      +
Sbjct: 117 TMGGQTALNCALELDKHGVLTKYNCELIGATKDSIEMAEDRNLFDKAMKRIGLECPRAET 176

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +Q  +  P +I+P       G  +            +    +   QLLI++
Sbjct: 177 AETMEEAFATQEKMGYPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPNHQLLIDE 236

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 237 SLIGWKEYEMEVVRDKNDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 296

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 297 LAVLREIGVETGGSNVQFGINPETGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 352

Query: 291 WM 292
            +
Sbjct: 353 KL 354



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++    PD      
Sbjct: 613 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIENPDGVIVQF 672

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T    +  A   ++ +      +   P           +
Sbjct: 673 GGQTPLKLARALEAAGVKIIGTSPDAIDRAEDRERFQHMIQQLNLVQPTNALATSLEDGL 732

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   ++   +L+++++D  IE+
Sbjct: 733 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEDELRHYLRTAVQASNEAPVLLDRFLDDAIEV 792

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +  ++   ++       + 
Sbjct: 793 DVDCVSDGTDVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSDELCDVMRAQTVAMAKE 849

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 850 LGVVGLMNVQFAV--KGETVYILEVNPRAART----VPFVSKCIGTSLAQIAAR 897


>gi|260914713|ref|ZP_05921178.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325]
 gi|260631217|gb|EEX49403.1| carbamoyl-phosphate synthase [Pasteurella dagmatis ATCC 43325]
          Length = 1071

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSTPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F         +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTFDEAWAAQAEVGFPTLIRPSFTMGGSGGGIAYNKDEFYAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPQNGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPYGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++ +      +   P   +       +     
Sbjct: 642 LKLANDLYANGVNIIGTSADSIDAAEDRERFQQILHKLNLKQPTNRTARNAEEAVKLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++   + +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVEELKRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  + P  +  ++  E++R       A+G +G
Sbjct: 762 CDGEDVVIGGIMQHIEQAGIHSG---DSACSLPPYSLSQEVQDEIRRQTADMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QDGVIYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861


>gi|192362421|ref|YP_001983145.1| carbamoyl phosphate synthase large subunit [Cellvibrio japonicus
           Ueda107]
 gi|190688586|gb|ACE86264.1| carbamoyl-phosphate synthase, large subunit [Cellvibrio japonicus
           Ueda107]
          Length = 1072

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIEWQTVAKIIEKERPDVILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +LE   +    +   A   + D+    Q +   G+    +  
Sbjct: 89  TMGGQTALNCALALAKNGVLEKYNVELIGAKEEAINKAEDRNLFDQAMKRIGLECARARI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +       P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 VHSMEEAKEVPKEFGFPCIIRPSFTMGGSGGGIAYNWEEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFAVNPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVHKEKPAGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEAEGVPIIGTSPDAIDKAEDRERFQQMIEKLGLLQPPNAIVRSLEEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
            +   +  P V++P        + ++ K+  +   +  +   +    +L++ +  + IE+
Sbjct: 702 VAADQVGYPLVVRPSYVLGGRAMEIVYKEDELRTYMRTAVQVSEDAPVLLDHFLNNAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  +++ +       
Sbjct: 762 DIDSVSDGKQVVIGGIMQHIEQCG---VHSGDSACSLPPYSLPADVQDDMREIVKKMAIE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  +   +     K++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNTQLAY--QDGKIYVIEVNPRASRT----VPFVSKCIGISLAKVAAR 866


>gi|315105144|gb|EFT77120.1| conserved domain protein [Propionibacterium acnes HL050PA2]
          Length = 123

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 1/103 (0%)

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D 
Sbjct: 16  IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            S +  +LE    PGMT +S+ P     AG    E+   +V+D
Sbjct: 76  -SGRPVFLEAGAAPGMTAISLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|300113563|ref|YP_003760138.1| hypothetical protein Nwat_0871 [Nitrosococcus watsonii C-113]
 gi|299539500|gb|ADJ27817.1| conserved hypothetical protein [Nitrosococcus watsonii C-113]
          Length = 364

 Score = 73.4 bits (178), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 60/307 (19%), Positives = 111/307 (36%), Gaps = 31/307 (10%)

Query: 23  ASALEDAG--------FKVSQIDVDRSVGLVLAHLKPDLAFNVLH----GNFGEDGLVQA 70
             A++ A         ++ + +D   ++   L    P+   N           ++  + A
Sbjct: 36  LEAIDRAKEALGELSDYQFTYLDNHSALLPQLIANPPNFVLNFCDTGYKNQAQQELHIPA 95

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           +LE+L IPY+ +G     L  DK   + V  + GVPV     V+   ++   L   P +I
Sbjct: 96  LLEMLGIPYSGAGPTCLGLCYDKSLVRSVAKTHGVPVPAETFVHGNDLNGAILKDFPALI 155

Query: 131 KPLKGGSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------- 179
           KP +G  S       ++  +      + + +       LLI++++ G E +         
Sbjct: 156 KPNRGDGSVGITENSLVYDEPQAHAYINKLAMEFPSCDLLIQEFLPGDEYSVGLLGNPSS 215

Query: 180 ---GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +           A       +Y  K    +            I + +++      +
Sbjct: 216 GFKILPILKVDYSRLAAHRLPPILAYASKVDPASPYWTDIKYGKAAIDEGLRQRLVGYCR 275

Query: 237 ----AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +GCR  +R DF  D    +V  LE+N  P          M  +AGY + ELL W+
Sbjct: 276 LLFERLGCRDYARFDFRADAQ-GEVKLLEVNPNPAWCWDGKLNLMVGFAGYRYGELLEWI 334

Query: 293 VEDASCL 299
           ++ A   
Sbjct: 335 LQAAQAR 341


>gi|92115200|ref|YP_575128.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter
           salexigens DSM 3043]
 gi|91798290|gb|ABE60429.1| carbamoyl-phosphate synthase large subunit [Chromohalobacter
           salexigens DSM 3043]
          Length = 1076

 Score = 73.0 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQAVAKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +LE   +    +   A   + D+    + + + G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLETYGVEMIGANAAAINKAEDRDLFDKAMKNIGLECPKAKV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHRMSEAWEIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 87/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + GF+   +         D D              V  +    KP       
Sbjct: 582 VHAALAMREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T    +  A   ++ +          P   +        
Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAF 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P V++P        + ++     +   +  +   ++   +L++ +++  IE+
Sbjct: 702 AKAEKIGYPLVVRPSYVLGGRAMEIVYDAAELEGYMTHAVKVSNDSPVLLDHFLNAAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P  +  E++         
Sbjct: 762 DIDAVSDGEQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLPAHVQDEMRDQVKRMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+      +     +++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LNVVGLMNVQLAW--QDDEIYVIEVNPRASRT----VPFVSKCIGTSLAQVAAR 866


>gi|328463870|gb|EGF35401.1| D-alanine--D-alanine ligase [Lactobacillus rhamnosus MTCC 5462]
          Length = 92

 Score = 73.0 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 2/72 (2%)

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +++ ++ ++      +G +   R DF      + V+ +E N  PGMTP+S+ P+ A   G
Sbjct: 2   VHQAMKDVSLQTMDVLGLQNYGRIDFF--ANDKGVWVIEANNLPGMTPLSLLPQEAEADG 59

Query: 283 YSFRELLLWMVE 294
             + +L++ ++ 
Sbjct: 60  VEYGDLVMDIIN 71


>gi|309805595|ref|ZP_07699638.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 09V1-c]
 gi|308165096|gb|EFO67336.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 09V1-c]
          Length = 1055

 Score = 73.0 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELQEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|254456005|ref|ZP_05069434.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Pelagibacter sp. HTCC7211]
 gi|207083007|gb|EDZ60433.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Pelagibacter sp. HTCC7211]
          Length = 1074

 Score = 73.0 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 101/302 (33%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  I         D D              +  +L   KPD    
Sbjct: 29  SGTQACKALRDEGYKVVLINSNPATIMTDPDVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++A     L+  +I    +   A + + D+ + ++ +   G+ +  S +
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMIDIGLDLPKSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN     S+  + I  P +I+P      LG  + K  +     +      +   Q+L+E+
Sbjct: 149 VNNINQASKVLNKIGLPAIIRPAFTLGGLGGGIAKNKKDYLKIIKNGLHESPVSQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   I     +     +      +          +        
Sbjct: 209 CLEGWKEFEMEVIRDKKDNCIIICSIENIDPMGIHTGDSVTVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVETGGSNVQFAINPKNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 99/326 (30%), Gaps = 51/326 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC------ASA---LEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+          A   L+DAGF+   +         D D S 
Sbjct: 561 IIILGGGPN-------RIGQGIEFDYCCCQAAFSLKDAGFETIMVNCNPETVSTDYDTSD 613

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    LK +  FN++                 G              L I  T    + 
Sbjct: 614 RLYFEPLKEEYVFNIIKKEKEKGNLIGVIAQFGGQTPIKLAKFLNDNKLPILGTQYTSID 673

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ R                   +  +     I  P +++P        + ++ +
Sbjct: 674 LAEDRDRFRDLLNKLKLKQAESGIAKTFKQAIQIAEKIGLPLMVRPSYVLGGRAMEIVHE 733

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++      + +LI++++D  +E+    + D         +   +       
Sbjct: 734 KSQLKNFVEEAFKAAEENPILIDKFIDHAMEVDVDAISDGKQVHVAGIMQHIEEAGIHSG 793

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  I   + KE++        A+  +G     F       +++ +E+N +
Sbjct: 794 ---DSACSLPPVSIKPYLIKEIENQTKKLALALKVKGFMNIQFAI--KKDEIYVIEVNPR 848

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    ++   
Sbjct: 849 ASRT----VPFVSKAKGLPLAKIASR 870


>gi|219685886|ref|ZP_03540692.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
 gi|219672585|gb|EED29618.1| D-alanine--D-alanine ligase [Borrelia garinii Far04]
          Length = 287

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 44/219 (20%)

Query: 3   VLMGGISSEREVSLSSGKACASALED-AGFKVSQIDVDR-SVGLVL-------------- 46
           ++ GG+S E E+S  S  +   AL D   + +  + +D+ +    L              
Sbjct: 7   LIFGGVSFEHEISCKSAYSIYLALLDLNKYNIYPVYIDKCTGIWYLLDSVSDPPKLIDID 66

Query: 47  -----------------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
                             +L+ D+ F V+HG  GEDG +Q +L++++IP   +GI+ SA+
Sbjct: 67  VLPIVSLLPGIGIFSNNKNLEIDVVFPVVHGRTGEDGAIQGVLKVMDIPCIGAGIIGSAI 126

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTM---------DSQHLISPPYVIKPLKGGSSLG 140
           S +K   K ++ S  +P+ P I   +            + +  +  P ++KP   GSS+G
Sbjct: 127 SSNKYFCKLLLKSFNIPLVPFIGFRQHDYLLDKEEIKRNVREALGYPVIVKPAVLGSSIG 186

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           I V        ++     +  +   +LIE++++  E+ C
Sbjct: 187 INVAYS--ESQIEFFIEEALKYDLTILIEKFIEAREIEC 223


>gi|121998283|ref|YP_001003070.1| hypothetical protein Hhal_1501 [Halorhodospira halophila SL1]
 gi|121589688|gb|ABM62268.1| conserved hypothetical protein [Halorhodospira halophila SL1]
          Length = 348

 Score = 73.0 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 71/298 (23%), Positives = 111/298 (37%), Gaps = 23/298 (7%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAILEL 74
            +   +AL   G  +   D    +   L    P+LA N+    +         + A+LEL
Sbjct: 39  ARRVLAALP--GVTLRVFDDHERLIDDLRADPPELAVNLCDNGYCNRLELEANIPALLEL 96

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
            EIPYT +G  A  LS DK   + + +S GV V     ++            P VIKP  
Sbjct: 97  FEIPYTGTGGAAMGLSRDKAAVRALAASLGVAVPEERTIDLSDPTPALPERYPAVIKPND 156

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCGVMGDASL----- 187
           G  S+G+      +                   +  ++Y+ G E T G++G+ +      
Sbjct: 157 GCGSIGMEPDCVVEDAHQAQAYLRRLAGSGAAWVLAQEYLPGAEYTVGLVGNPATGLLVL 216

Query: 188 -----DVTEIAVPKSDFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAI 238
                D T +        SY  K    +  +      PA++  +    ++  A      +
Sbjct: 217 PALVVDYTALPPELPPILSYGSKVDPASPYYQALRFAPAQLSEEKRSAMEVAARRLFARV 276

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G R  +R DF  D        L+ N  P   P      MA YAGYS+ +LL  +V  A
Sbjct: 277 GARDYARVDFREDLR-GVPRLLDFNNHPSWGPDGKLAMMAGYAGYSYADLLERIVRAA 333


>gi|71065374|ref|YP_264101.1| carbamoyl-phosphate synthase large subunit [Psychrobacter arcticus
           273-4]
 gi|71038359|gb|AAZ18667.1| carbamoyl-phosphate synthase large subunit [Psychrobacter arcticus
           273-4]
          Length = 1084

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +     +L         +   +  ++ D+    + +   G+      +
Sbjct: 89  TMGGQTALNCALELDKHGVLTKYNCELIGATKDSIEMAEDRNLFDKAMKRIGLECPRAET 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +Q  +  P +I+P       G  +            +    +   QLLI++
Sbjct: 149 AETMEEAFATQEKMGYPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPNHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++    PD      
Sbjct: 585 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIENPDGVIVQF 644

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T    +  A   ++ +      +   P           +
Sbjct: 645 GGQTPLKLARALEAAGVKIIGTSPDAIDRAEDRERFQHMIQQLNLVQPTNALATSLEDGL 704

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   ++   +L+++++D  IE+
Sbjct: 705 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEDELRHYLRTAVQASNEAPVLLDRFLDDAIEV 764

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +  ++   ++       + 
Sbjct: 765 DVDCVSDGTDVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSKELCDVMRAQTVAMAKE 821

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 822 LGVVGLMNVQFAV--KGETVYILEVNPRAART----VPFVSKCIGTSLAQIAAR 869


>gi|253755099|ref|YP_003028239.1| D-alanine--D-alanine ligase [Streptococcus suis BM407]
 gi|251817563|emb|CAZ55310.1| putative D-alanine--D-alanine ligase [Streptococcus suis BM407]
          Length = 316

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 49/285 (17%), Positives = 105/285 (36%), Gaps = 19/285 (6%)

Query: 23  ASALEDAGF-----KVSQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELL 75
              +    F     +V+  D      + +     D   N    + +   +  V A  E  
Sbjct: 30  LKNILKENFSKFVKEVTFYDNFEHFKINVQKHHNDFVLNFDFGYKSRTRNMNVPAFCENY 89

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPL 133
            I Y +       L  DK  +++   + GV V  S  +  + +  +    ++ P +IKP 
Sbjct: 90  NIKYFNPDPYVQVLCQDKFMTEKFAENFGVTVPNSLLVFKHSYQKNLLKDLNYPLIIKPN 149

Query: 134 KGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD---ASL 187
               S+GI    +++        + +      G  +L+E+Y++G E+   +  +      
Sbjct: 150 YESESIGITQDSIVENPGDADTIIGKLFKEFDG--ILVEEYIEGKEVAITIWDNGEEIFF 207

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +  E+  P+ +   Y+   S +     +  K    +  +        ++ +    + R D
Sbjct: 208 EEVELIFPRLEEIKYQAYTSEIKQKIGIEIKKSCYLSDKDIINLKQLYKNLSPNKLIRID 267

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                 + K + +EIN  PG+ P S+ P+     GY +  +L  +
Sbjct: 268 GRI--KNSKFYLIEINANPGLYPKSVVPKTFLINGYDYETMLKKL 310


>gi|326796870|ref|YP_004314690.1| carbamoyl-phosphate synthase, large subunit [Marinomonas
           mediterranea MMB-1]
 gi|326547634|gb|ADZ92854.1| carbamoyl-phosphate synthase, large subunit [Marinomonas
           mediterranea MMB-1]
          Length = 1071

 Score = 72.6 bits (176), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPSMADATYIEPIEWKTVEKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE  ++    +   A   + D+ R  + + + G+    +  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFDVEMIGATADAIDKAEDRHRFDEAMKAIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  ++ P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEALKVQSEVNFPCIIRPSFTMGGTGGGIAYNMEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 94/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + GF+   +         D D              V  ++   KP       
Sbjct: 582 VHAALGLREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +S         P   ++      +
Sbjct: 642 GGQTPLKIARALQNEGVPIIGTTPEAIDRAEDRERFQSMIQRLGYKQPNNATVRSTEQAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P V++P        + ++  +  +   +  +   ++   +L++ ++   IE+
Sbjct: 702 VKAAEIGYPLVVRPSYVLGGRAMEIVYNEAELSRYMTTAVKVSNDSPVLLDHFLKAAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P DI  E++ +       
Sbjct: 762 DIDCVSDGKQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLPADIQDEIRSMIKSMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  +         ++F +E+N +   T     P ++   G S  ++
Sbjct: 819 LGVIGLMNTQLAV--QDGEIFVIEVNPRASRT----VPFVSKCIGRSLAQI 863


>gi|312870725|ref|ZP_07730832.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 3008A-a]
 gi|311093737|gb|EFQ52074.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 3008A-a]
          Length = 1055

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +  +   +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNSEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|325913772|ref|ZP_08176133.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 60-B]
 gi|325476972|gb|EGC80123.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           UPII 60-B]
          Length = 1055

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVETLTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|315653073|ref|ZP_07906001.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195]
 gi|315489608|gb|EFU79242.1| carbamoyl-phosphate synthase [Lactobacillus iners ATCC 55195]
          Length = 1063

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 642

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 643 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 703 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 763 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 820 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 37  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 96

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 97  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 156

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 157 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 217 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 275

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 276 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 331

Query: 291 WM 292
            +
Sbjct: 332 KI 333


>gi|312875183|ref|ZP_07735196.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2053A-b]
 gi|311089290|gb|EFQ47721.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2053A-b]
          Length = 1055

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELAAVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|309803567|ref|ZP_07697659.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 11V1-d]
 gi|308164315|gb|EFO66570.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 11V1-d]
          Length = 1055

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLQEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALTFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|314922658|gb|EFS86489.1| conserved domain protein [Propionibacterium acnes HL001PA1]
          Length = 123

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 28/103 (27%), Positives = 41/103 (39%), Gaps = 1/103 (0%)

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P    Y Y   Y+   +    PA I     +    +A +  + +   GISR D + D 
Sbjct: 16  IRPVGGVYDYSAMYTGGETRLTAPADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE 75

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            S +   LE    PGMT  S+ P     AG    E+   +V+D
Sbjct: 76  -SGRPVLLEAGAAPGMTATSLVPVAMKAAGLDLGEVCSRLVDD 117


>gi|309807411|ref|ZP_07701374.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 01V1-a]
 gi|308169333|gb|EFO71388.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LactinV 01V1-a]
          Length = 1055

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAIYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|330982516|gb|EGH80619.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. aptata
          str. DSM 50252]
          Length = 97

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+     L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60


>gi|330937587|gb|EGH41525.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. pisi str.
          1704B]
          Length = 97

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+     L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60


>gi|289676715|ref|ZP_06497605.1| D-alanyl-alanine synthetase A [Pseudomonas syringae pv. syringae
          FF5]
          Length = 97

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 1/57 (1%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV 57
          +A++ GG SSE EVSL S +   +A++   + ++ I VD+     L   + D   N 
Sbjct: 5  VAIVFGGQSSEHEVSLQSARNVINAIDRERYALTLIGVDKLGRW-LHFDEADYLLNA 60


>gi|47569514|ref|ZP_00240194.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241]
 gi|47553843|gb|EAL12214.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9241]
          Length = 1072

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109
            L G  G + +   + +   +      IL + L         D  RS     +  +P   
Sbjct: 89  TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQELNEPIPSST 147

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +++P       G  +   ++ +   +      +   Q L+E
Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   +     +     +                 + Y+ ++ 
Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|115384442|ref|XP_001208768.1| predicted protein [Aspergillus terreus NIH2624]
 gi|114196460|gb|EAU38160.1| predicted protein [Aspergillus terreus NIH2624]
          Length = 292

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 3/78 (3%)

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGMTP-VSIFPEMA 278
           D    V ++A  A++ +GCR   R D  F P       + +E+N   G+ P  S++  +A
Sbjct: 203 DQMARVSQVALDAYKGLGCRDAGRVDVRFGPDGDGSNPYVIEVNPIFGLNPNHSLYTWIA 262

Query: 279 AYAGYSFRELLLWMVEDA 296
              G S+ +LL  ++E+A
Sbjct: 263 KNNGLSYTDLLQNIIENA 280


>gi|218899040|ref|YP_002447451.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842]
 gi|226700919|sp|B7IUP6|CARB_BACC2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|218541911|gb|ACK94305.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus G9842]
          Length = 1072

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109
            L G  G + +   + +   +      IL + L         D  R+     +  +P   
Sbjct: 89  TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPIPSST 147

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +++P       G  +   ++ +   +      +   Q L+E
Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   +     +     +                 + Y+ ++ 
Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|168699143|ref|ZP_02731420.1| D-ala D-ala ligase domain protein [Gemmata obscuriglobus UQM 2246]
          Length = 355

 Score = 72.6 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 58/315 (18%), Positives = 113/315 (35%), Gaps = 28/315 (8%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDLAFNVLHG---NFG 63
           SE ++   +       L  AGF  +++ ++     +   L   +P   FN+  G      
Sbjct: 24  SEHDI-YDTVGDAYKVLVAAGFVTTKLGINHDPQPLLDALKRDRPAAVFNLFEGIATQTS 82

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +    A+LE L +P+T     A AL  DK+R+K V+++ GVP    ++V+   + +   
Sbjct: 83  TEVSAAALLEWLNVPFTGCPAAALALGRDKVRTKHVLAASGVPTPDYLIVDTLPVPTWCH 142

Query: 124 ISPPYVIKPLKGGS-SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
             P  V    +  S  +    +   Q      +  +   +G   ++E+Y+ G EL   V+
Sbjct: 143 GWPAIVKPAYQDASVGIEQSSVVTSQEQLQAQVAHTLATYGPPAIVERYIKGRELHVNVI 202

Query: 183 GDASLDVTEIA------------VPKSDFYSYELKYSSLNSTHV------LPAKIPLDIY 224
                   E               P               S          P  +P   +
Sbjct: 203 EPFGATGGEPVALAPTEIAFQKDEPGRWAVYTFAAKWHEQSDEYKAASLKFPVDLPAADF 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             + ++   + + +GCR  +R D   D        LE+N  P +  +++  +     G S
Sbjct: 263 ARLAQIVQRSFRVVGCRDYARVDVRMDA-GGAFHVLEVNPNPYLNSITLV-DGLKARGSS 320

Query: 285 FRELLLWMVEDASCL 299
           +   ++ +   A   
Sbjct: 321 YERFVVELTLAALAR 335


>gi|329919624|ref|ZP_08276613.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 1401G]
 gi|328937429|gb|EGG33851.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 1401G]
          Length = 1055

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|312872851|ref|ZP_07732913.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2062A-h1]
 gi|311091585|gb|EFQ49967.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2062A-h1]
          Length = 1055

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + +   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIICCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|312873764|ref|ZP_07733809.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2052A-d]
 gi|311090762|gb|EFQ49161.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           LEAF 2052A-d]
          Length = 1055

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTSTTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELGEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFSDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|309809683|ref|ZP_07703539.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 2503V10-D]
 gi|308170043|gb|EFO72080.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus iners
           SPIN 2503V10-D]
          Length = 1055

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|302190954|ref|ZP_07267208.1| carbamoyl phosphate synthase large subunit [Lactobacillus iners
           AB-1]
          Length = 1055

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 577 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 635 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 695 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 755 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 812 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 860



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 89  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 149 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +  S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLNLIRALKIEGGCNVQLALNTNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|259501322|ref|ZP_05744224.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335]
 gi|259167292|gb|EEW51787.1| carbamoyl-phosphate synthase [Lactobacillus iners DSM 13335]
          Length = 1063

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 102/295 (34%), Gaps = 34/295 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+K   I+ +                       V  ++   KP+    ++  
Sbjct: 585 CVKALQKLGYKAIVINSNPETVSTDFSISDKLYFEPITLEDVLNIVDIEKPEGV--IIQF 642

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  + A L+   +    + +     + D+    QV+ + G+     +     +  +
Sbjct: 643 GAQTAINLAAGLKEHGVKILGTDVEDINRAEDREEFDQVIKNLGLKQPKGLTATTRQGVI 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P +++P        + ++  +  +   L  ++   +   +L++ Y+DG E  
Sbjct: 703 DAAIKIGYPVLVRPSYVLGGKAMEIVYNEAELEEYLDNNAYITNDHPILVDDYLDGKECD 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  +     P     DI +++  +      A+
Sbjct: 763 VDAISDGVDILIPGIMEHVEHAG---VHSGDSMAVYPPQSFLDDIQQKICEVTRKLAIAL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            C+GI    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 820 KCQGIMNIQFIV--RDNDVYVIEVNPRASRT----VPFLSKITGIEMVQVATKII 868



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      ++  ++    PD    
Sbjct: 37  SGTQACLALREEGYEVILVNSNPATIMTDTEIADKVYLEPLTVEALTRIIYQEYPDAILP 96

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         IL+ L I    + + +   + D+   K++       VP   +
Sbjct: 97  TLGGQNGLNMALALSKTGILDKLNIELLGTKLKSIEQAEDREEFKKLCKQLGEPVPPSLT 156

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +   + +    +   + LIE+
Sbjct: 157 VHNAEDALAFAEKIGYPIIVRPAFTMGGTGGGICNNRKELATVVARGLDLSPVTECLIEK 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 217 SIAG-YKEIEFEVMRDCTDNCMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 275

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        +  S     +E+N  P ++  S     +   GY   ++  
Sbjct: 276 SLNLIRALKIEGGCNVQLALNTNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 331

Query: 291 WM 292
            +
Sbjct: 332 KI 333


>gi|2231987|gb|AAB62175.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score = 72.6 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 62/269 (23%), Positives = 106/269 (39%), Gaps = 43/269 (15%)

Query: 30  GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55
            F    I + ++    L                                     + D+AF
Sbjct: 1   KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFSPDRKTHGLLVMKEREYETRRIDVAF 60

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    ++ +
Sbjct: 61  PVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIEK 120

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G 
Sbjct: 121 GDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILIEQAISGC 178

Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ C VMG+    +                    E +  S N+  ++PA IP++    VQ
Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMIIVPADIPVEERNRVQ 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             A   ++ +GCRG++R D         V
Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|307546738|ref|YP_003899217.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM
           2581]
 gi|307218762|emb|CBV44032.1| carbamoyl phosphate synthase, large subunit [Halomonas elongata DSM
           2581]
          Length = 1076

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPVMADATYIEPITWQAVEKIIEAERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +LE   +    +   A   + D+    Q +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLEKFGVEMIGANADAINKAEDRDLFDQAMKRIGLECPKAKV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  V    +       +    ++  +LLI++
Sbjct: 149 AHSMDEAWQIQGELGFPVIIRPSYTMGGSGGGVAYNKEEFEEICTRGFELSNNHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQNMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVDPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  +    KP       
Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIADKEKPAGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T    +  A   ++ +          P   +        
Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQQMIDKLGLKQPPNATARSFEDAF 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                I  P V++P        + ++     +   +  +   ++   +L++ +++  IE+
Sbjct: 702 AKAEAIGYPLVVRPSYVLGGRAMEIVYDATELENYMTHAVKVSNDSPVLLDHFLNAAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P D+  E++         
Sbjct: 762 DIDAVSDGRQVVIGGIMQHIEQAG---VHSGDSACALPPYSLPADVQDEMRDQVKRMAVE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G +G+      +     +++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVKGLMNVQLAW--QDGEIYVIEVNPRASRT----VPFVSKCVGTSLAQIAAR 866


>gi|225849501|ref|YP_002729666.1| carbamoyl-phosphate synthase large chain, N- section
           (carbamoyl-phosphate synthetase ammonia chain)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225644401|gb|ACN99451.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 559

 Score = 72.2 bits (175), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++                     +   +  ++   +PD    
Sbjct: 29  SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADRTYIEPLITPVLEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + IL+   +    +       + D+   K+ + + G+ +  S  
Sbjct: 89  TLGGQTALNLAIELYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +I+P       G  +    +     +      +   ++L+E+
Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNREEFYPKVKAGLDASPIHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITIAPAMTLSDREYQILRNYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + + + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|328774412|gb|EGF84449.1| hypothetical protein BATDEDRAFT_34316 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 790

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 101/319 (31%), Gaps = 44/319 (13%)

Query: 20  KACASALEDAGF---KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED----GLVQAIL 72
           K    AL D G+   ++  ID  + +   L+        N     +  D      + A+L
Sbjct: 461 KQLVKALYDIGYSDEQLEIIDTHKDLVHTLSEKSVSFVLNFCDEGYQNDALKEMHIPALL 520

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----------- 121
           ++  I Y+ +G     +  DK        + GVP    +        S            
Sbjct: 521 DMANIQYSGAGPNCLTICYDKGLVNSTARTLGVPTPREMTYLSDVATSAVADLNKVDQLI 580

Query: 122 -HLISPPYVIKPLKGG---SSLGIIVIKKDQSIPLDL-------------LQSSSWNHGD 164
              I  P  IKP+KG          +I     +   +              +  +     
Sbjct: 581 REQILYPAFIKPIKGDNSLGITSRSIIHNKAELASYMDELSGIGIRDVLVQEYLTGTEYG 640

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK-SDFYSYELKYSSLNSTHVLPAKIPLDI 223
             ++     G      +  D S  V +   P       ++      +    + A +  ++
Sbjct: 641 IGMVGNSETGFHFFPTLKVDYSKIVEKQLEPILGYESKWDPSSPYWSDISYVAANLSAEV 700

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFL--------FDPLSRKVFWLEINVQPGMTPVSIFP 275
             ++++   +  +  GCR  +R DF          D L   +  LE+N  PG        
Sbjct: 701 DNDLRKACVVLWKRFGCRDYARFDFRSDVGTGDNKDGLGGTIKLLEVNPNPGWCWDGKLA 760

Query: 276 EMAAYAGYSFRELLLWMVE 294
            MA   G  ++++L  +++
Sbjct: 761 YMAKLDGIEYKDMLRMIIQ 779


>gi|239994554|ref|ZP_04715078.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii
           ATCC 27126]
          Length = 1071

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L E      G  A A+   + R +   +   + +       
Sbjct: 89  TMGGQTALNCALELDKHGVLEEFGCELIGATADAIDKAENRERFDKAMKNIGLECPRAEI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +MD  H     I  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHSMDEAHDVLSRIGFPCIIRPSFTMGGTGGGIAYNIDEFNEICHRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQLMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVDPKTGRVVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  +P       
Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + +  T    +  A   ++ +      +   P   ++      +
Sbjct: 642 GGQTPLKLARALEAAGVPVIGTSPEAIDRAEDRERFQQMVNKLNLKQPANATVTNVEQAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++   + +   L ++   ++   +L+++++D  IE+
Sbjct: 702 TMAEEIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNEAVKVSNDAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  +I   ++         
Sbjct: 762 DIDAICDGKDVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSKEIQDVMREQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVVGLMNTQFAI--KDGEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|83771332|dbj|BAE61464.1| unnamed protein product [Aspergillus oryzae]
          Length = 220

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 30/208 (14%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           M  Q L S P  IKP   GSS GI     +     +   +    +   G  +LIE ++ G
Sbjct: 1   MHGQKLSSFPLFIKPACEGSSKGIYPSSKVDNFTELERGIQVLQTRFPGASILIETFLSG 60

Query: 175 IELTCGVMGDASLDVTEIAVPKSD----------------FYSYELKYSSLNSTHVLPAK 218
            E T  ++G                                 +         +    P  
Sbjct: 61  QEYTVSIIGTGKRSRVIGTTHIDWEGLSRQKQQASVAEKGPANTSDGSFWDVNNKNGPDA 120

Query: 219 IPLDIYKEVQRL---------AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              + +   +           A  A +A+ C  + R D  +     + + LEIN  PG+ 
Sbjct: 121 DEPERFLNSRDNPNVQAVEDLALQAWRALECCDVGRVDIRY-GADNRPYVLEINPLPGLR 179

Query: 270 P-VSIFPEMAAYAGYSFRELLLWMVEDA 296
           P  SI    A + G S +EL+  +++ A
Sbjct: 180 PDWSILARTAVHEGISHKELIGKVIDSA 207


>gi|325126580|gb|ADY85910.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus 2038]
          Length = 1062

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    +P+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   ++            P   +   +   M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++ +++  +      A+ C+G
Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--RDGNVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +    +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|183601001|ref|ZP_02962494.1| hypothetical protein PROSTU_04617 [Providencia stuartii ATCC 25827]
 gi|188019334|gb|EDU57374.1| hypothetical protein PROSTU_04617 [Providencia stuartii ATCC 25827]
          Length = 1073

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEAYAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   +++     ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVVTIEQAVEKASG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGLPLAKIAAR 867


>gi|206971153|ref|ZP_03232104.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           AH1134]
 gi|206733925|gb|EDZ51096.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           AH1134]
          Length = 1072

 Score = 72.2 bits (175), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109
            L G  G + +   + +   +      IL + L         D  RS     +  +P   
Sbjct: 89  TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRSLMQELNEPIPSST 147

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +++P       G  +   ++ +   +      +   Q L+E
Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   +     +     +                 + Y+ ++ 
Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|261346436|ref|ZP_05974080.1| carbamoyl-phosphate synthase, large subunit [Providencia
           rustigianii DSM 4541]
 gi|282565419|gb|EFB70954.1| carbamoyl-phosphate synthase, large subunit [Providencia
           rustigianii DSM 4541]
          Length = 1073

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEAYAVADDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLNLKQPKNATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|268610484|ref|ZP_06144211.1| carbamoyl phosphate synthase large subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 1073

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 95/306 (31%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRQLGYEIVLVNSNPATIMTDPDVADITYIEPLNLERLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +S  G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELDQAGVLKKYNVQVIGVQVDAIERGEDRIEFKNAMSELGIGMPKSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYTVDEAVKIAEKLRYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          + +               +            +P  +  ++ +  
Sbjct: 209 CIFGWEELELEVVRDAENNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              ++   ++I   G     F  DP + ++  +EIN +   T  S     +   G+    
Sbjct: 268 ---SYKIIESIEVIGGCNCQFARDPETGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSAML 325



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 90/298 (30%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   D  R+        +P     +     +   + 
Sbjct: 642 LNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNADEAIAIANK 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  D+ + + +  +        +LI+++++          
Sbjct: 702 IGYPVMVRPSYVLGGRGMEIVHDDEMMRVYMNAAVGVTPDRPILIDRFLN---HATECEA 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  +LPAK   D     ++         +   G
Sbjct: 759 DAISDGTNCFVPCVMEHIELAGVHSGDSACILPAKNLTDKQVATIKEYTKKIAVEMNVCG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +        V+ LE N +   T     P ++     +   +   ++  +   R
Sbjct: 819 LMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCDINMVRIATDIITSSLTGR 870


>gi|161508239|ref|YP_001577721.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           helveticus DPC 4571]
 gi|172048328|sp|A8YVZ3|CARB_LACH4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|160349228|gb|ABX27902.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           helveticus DPC 4571]
          Length = 1062

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    +P+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   ++            P   +   +   M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++ +++  +      A+ C+G
Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|111610238|gb|ABH11616.1| pyrimidine-specific carbamoyl-phosphate synthase large chain
           [Lactobacillus helveticus CNRZ32]
          Length = 1062

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    +P+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   ++            P   +   +   M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++ +++  +      A+ C+G
Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|116514876|ref|YP_813782.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
 gi|122274392|sp|Q047M8|CARB_LACDB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116094191|gb|ABJ59344.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ATCC BAA-365]
          Length = 1062

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    +P+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   ++            P   +   +   M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++ +++  +      A+ C+G
Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+       V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +    +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKIVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|268592107|ref|ZP_06126328.1| carbamoyl-phosphate synthase, large subunit [Providencia rettgeri
           DSM 1131]
 gi|291312503|gb|EFE52956.1| carbamoyl-phosphate synthase, large subunit [Providencia rettgeri
           DSM 1131]
          Length = 1073

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEAFAVADAVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++   +
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVTAIEQAVEKAAV 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVRNLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|326941656|gb|AEA17552.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar chinensis CT-43]
          Length = 1072

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 96/303 (31%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCP 109
            L G  G + +   + +   +      IL + LS  +    + +        +  +P   
Sbjct: 89  TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPIPSST 147

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +++P       G  +   ++ +   +      +   Q L+E
Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIEIVSGGLKHSPVTQCLLE 207

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   +     +     +                 + Y+ ++ 
Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|212709135|ref|ZP_03317263.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM
           30120]
 gi|212688047|gb|EEB47575.1| hypothetical protein PROVALCAL_00168 [Providencia alcalifaciens DSM
           30120]
          Length = 1073

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLGTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEANAVADDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLNLKQPQNATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVRSLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVQLAKVAAR 867


>gi|149375766|ref|ZP_01893534.1| Carbamoylphosphate synthase large subunit [Marinobacter algicola
           DG893]
 gi|149359891|gb|EDM48347.1| Carbamoylphosphate synthase large subunit [Marinobacter algicola
           DG893]
          Length = 1071

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWKTVAKIIEKEQPDALLP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          +         +E+   ++  +  A   D+            P    
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRATI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +  + I  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHSMAEAWEVANDIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVNPDNGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 104/322 (32%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42
           + V+ GG +         G+          +AL   D G++   I         D D S 
Sbjct: 561 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMRDDGYETIMINCNPETVSTDYDTSD 613

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    +  +    ++H            G              + I  T    +  A  
Sbjct: 614 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++  +   + +   I  P V++P        + ++  ++ +
Sbjct: 674 RERFQQMIGRLGLIQPENATVRSHEEGILAAREIGYPLVVRPSYVLGGRAMEIVYDEEEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L++ +++  IE+    + D    V    +   +       +S  
Sbjct: 734 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGKDVVIGGIMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +P D+  E++         +   G+      +     +++ +E+N +   T
Sbjct: 791 SACSLPPYTLPKDVQDEMREAVRKMAIELDVIGLMNVQLAW--QGGQIYVIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S  ++   
Sbjct: 849 ----VPFVSKAIGVSLAKVAAR 866


>gi|300724594|ref|YP_003713919.1| carbamoyl phosphate synthase large subunit [Xenorhabdus nematophila
           ATCC 19061]
 gi|297631136|emb|CBJ91827.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 1074

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L+   +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLDEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPTGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANVTVTTIEQAVEKGKA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGRPLAKVAAR 867


>gi|237745680|ref|ZP_04576160.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes
           HOxBLS]
 gi|229377031|gb|EEO27122.1| carbamoyl-phosphate synthase subunit large [Oxalobacter formigenes
           HOxBLS]
          Length = 1076

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTFIEPITWKVVERIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLYRNGVLEKYHVELIGASPEAIDKAEDRSKFKEAMTRIGLSSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D Q  +  P +I+P       G  +   ++       +    +   +LLIE+
Sbjct: 149 AHTLDEAWDVQKKMGFPVIIRPSFTLGGTGGGIAYNEEEFDAICRRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVDTGGSNVQFAVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 103/319 (32%), Gaps = 51/319 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + VL GG +         G+           A A+ + G++   +           D+  
Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDISD 608

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G       +      + I  T   ++ +A  
Sbjct: 609 RLYFEPLTLEDVLEIVDKEKPYGVIVQYGGQTPLKLALDLEANGVPIVGTSPDMIDAAED 668

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +      +   P   +       M+    I  P V++P        + ++     +
Sbjct: 669 RERFQKLLKELNLRQPPNRTARTEEEAMELAREIGYPIVVRPSYVLGGRAMEIVHDQTGL 728

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D IE+    + D    +    +   +       +S  
Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCISDGKRVLIGGVMEHIEQAG---VHSGD 785

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRK----VFWLEIN 263
           ++  + P  +  +  +E++R   L  + +   G+    F      +  K    VF LE+N
Sbjct: 786 SACSLPPYSLSKETIEELKRQTTLMAKGLNVVGLMNVQFAIQHQEVDGKLQDVVFVLEVN 845

Query: 264 VQPGMTPVSIFPEMAAYAG 282
            +   T     P ++   G
Sbjct: 846 PRASRT----VPFVSKATG 860


>gi|323698354|ref|ZP_08110266.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           ND132]
 gi|323458286|gb|EGB14151.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans ND132]
          Length = 1077

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLVNSNPASIMTDPELADATYIEPIEPETVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +L+   +    + I     +  +   ++ + + G+ +  S +
Sbjct: 89  TLGGQTGLNTALAVADMGVLDKFGVELIGANIDVINKAESREEFREAMRNIGLHMPESGI 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I  P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CHNMDDVREWGEKIPFPIIVRPAYTLGGSGGGVAYNMEELEQICANGLALSMKHEIMLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SILGWKEYELEVMRDKKDNCVIICSIENLDPMGVHTGDSVTVAPAQTLTDDEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVMREIGVETGGSNVQFAVNPEDGELIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 89/266 (33%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KPD       G    +  ++ +   + +  T    + 
Sbjct: 618 DKLYFEPLTF---EDVMNIIEFEKPDGVIVQFGGQTPLNLALRLMNAGVPLIGTSPDAID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +      +   P   + +      +    ++ P V++P       G+ ++  
Sbjct: 675 RAEDRERFKQFLNKLNLRQPPNGTAMSMVEAREIAEKLTFPLVLRPSYVLGGRGMDIVYS 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                     S+  +     LI+++++  +E+    + D         +   +       
Sbjct: 735 MDEFDHYFRHSALVSPEHPTLIDKFLENAVEVDVDALADGEDVYIGGVMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +++ + P  +  ++ +E++R      + +G  G+    F       +V+ +E+N +
Sbjct: 795 ---DSASVLPPYSLSSELIREIERQTVAMAKELGVVGLMNVQFAI--KDNEVYIIEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    +L   
Sbjct: 850 ASRT----VPFVSKATGVPLAKLATR 871


>gi|163941626|ref|YP_001646510.1| carbamoyl phosphate synthase large subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|226700922|sp|A9VTC6|CARB_BACWK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|163863823|gb|ABY44882.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           weihenstephanensis KBAB4]
          Length = 1072

 Score = 71.8 bits (174), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLREEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCP 109
            L G  G + +   + +   +      IL + L         D  R+     +  +P   
Sbjct: 89  TLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPIPSST 147

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +++P       G  +   ++ +   +      +   Q L+E
Sbjct: 148 IIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIEIVSGGLKHSPVTQCLLE 207

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   +     +     +                 + Y+ ++ 
Sbjct: 208 KSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRN 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L 
Sbjct: 267 TSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 860


>gi|296136188|ref|YP_003643430.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia
           K12]
 gi|295796310|gb|ADG31100.1| carbamoyl-phosphate synthase, large subunit [Thiomonas intermedia
           K12]
          Length = 1074

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A  ++ D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHTLEEAWAVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL     G++   +         D D              V  V+   +P       
Sbjct: 578 VHAALAMRADGYETVMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKERPTGVIVQY 637

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++  A   ++ +          P   +       +
Sbjct: 638 GGQTPLKLALDLEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEAL 697

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE 
Sbjct: 698 TKAEEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 757

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +       +   +       +S  ++  + P  +       ++         
Sbjct: 758 DVDAICDGTEVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAATVARIKEQTVKLAHG 814

Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F    L  +  +F LE+N +   T     P ++   G    ++   
Sbjct: 815 LKVVGLMNVQFAIQQLDGEDRIFLLEVNPRASRT----VPFVSKATGLQLAKIAAR 866


>gi|37524606|ref|NP_927950.1| carbamoyl phosphate synthase large subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36784030|emb|CAE12899.1| carbamoylphosphate synthetase large subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
          Length = 1074

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRCRFDIAMKKIGLETPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEALAVADQVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +  +  + I  T    +  A   ++ +          P   ++      ++  ++
Sbjct: 648 LKLARELEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPENATVTTIERAVEKANI 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + + ++   +L++ ++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVNVSNDAPVLLDCFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +G RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDDEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867


>gi|282896743|ref|ZP_06304751.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
 gi|281198461|gb|EFA73349.1| D-alanylalanine synthetase [Raphidiopsis brookii D9]
          Length = 391

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 66/342 (19%), Positives = 114/342 (33%), Gaps = 49/342 (14%)

Query: 1   MAVLMGGIS-SEREV--------SLSS----GKACASALEDAGFKVSQIDVDR-SVGLVL 46
           + V+ GG S  E  V        S  +     +  A AL   GF    +  D  ++   L
Sbjct: 31  IVVIHGGDSNKEGSVIYKTHNPRSRKTYEQVAQDIAKALMTIGFDHVFVMADDMTLPQRL 90

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQA--ILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                 LA+    G  G + +     +LE+L IPY     L S++   K   K+ + + G
Sbjct: 91  KQENIHLAWLNTGGVQGYNSVCHTPALLEMLGIPYVGHNPLNSSILDQKHIFKRELQTWG 150

Query: 105 VPVCPSILVNRFTMDSQH-----------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +   P +  +       H               P+V+KP+ G +SL I   K  + +   
Sbjct: 151 INTAPFVTWHPAQGLFDHHRSENFAITFPNYKGPFVVKPVSGRASLNIHFAKNIEDLSAA 210

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV---------------PKSD 198
           +       H    LIE Y  G E    V G                          P   
Sbjct: 211 VANIHHTTH-STALIETYFPGREFCVSVCGYVIHINKTFYKKTQPFAFSTIERILEPGEH 269

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
            ++   K         L      ++ + +  +A   +Q+     + R D   D  +  + 
Sbjct: 270 IFTSMDKKPITTERIHLLDDHESELKQNLIEIAQKLYQSFHLNTLVRVDLRSDE-NGILH 328

Query: 259 WLEINVQPGMT-----PVSIFPEMAAYAGYSFRELLLWMVED 295
            LE N +P +        S+  E       ++ +L+L ++ D
Sbjct: 329 VLEANPKPDLKRPNNIATSLVAEGLHEQRMNYEDLILSLLSD 370


>gi|188996191|ref|YP_001930442.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931258|gb|ACD65888.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 558

 Score = 71.4 bits (173), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++                     +   +  ++   +PD    
Sbjct: 29  SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKIIEKERPDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G        D   + IL+   +    +       + D+   K+ + + G+ +  S  
Sbjct: 89  TLGGQTALNLAIDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +I+P       G  +          +      +   ++L+E+
Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLDASPIHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPAITLSDREYQILRNYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + + + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|324327785|gb|ADY23045.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar finitimus YBT-020]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +LE   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|42782979|ref|NP_980226.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC
           10987]
 gi|81830987|sp|Q732I3|CARB_BACC1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|42738906|gb|AAS42834.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus ATCC
           10987]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +LE   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYSFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVVFE--NQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|237756464|ref|ZP_04585000.1| carbamoyl-phosphate synthase large chain, N- section
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691378|gb|EEP60450.1| carbamoyl-phosphate synthase large chain, N- section
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 558

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++                     +   +  ++   +PD    
Sbjct: 29  SGTQGAKALKEEGYRVILVNSNPATIMTDPNIADKTYIEPLITPVLEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + IL+   +    +       + D+   K+ + + G+ +  S  
Sbjct: 89  TLGGQTALNLAVDLYEKGILDKYNVELIGAKYEVIKKAEDRDLFKKAMENIGLSMPKSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +I+P       G  +          +      +   ++L+E+
Sbjct: 149 VKSIAEAEEVIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYPKVKAGLDASPIHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPAITLSDREYQILRNYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + + + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMREIGVETGGSNVQFSQNPKTGEFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|114778232|ref|ZP_01453104.1| carbamoyl-phosphate synthase large subunit [Mariprofundus
           ferrooxydans PV-1]
 gi|114551479|gb|EAU54034.1| carbamoyl-phosphate synthase large subunit [Mariprofundus
           ferrooxydans PV-1]
          Length = 1071

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGVQACKALKEEGYRVILVNSNPATIMTDPEFADATYIEPVTWEVVAKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G              ILE   +    +   A  ++ D+ R K  +   G+ +     
Sbjct: 89  TMGGQTALNCALSLNKHGILEKFNVKLIGAQPDAIDMAEDRERFKDAMDRLGLEMARGGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +    +            +  D++L+E+
Sbjct: 149 AHSMDEARSLASDIGYPIIIRPSFTLGGSGGGIAYNPEEFEQIAASGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDHADNCVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFAVNPVDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 93/290 (32%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL D G++   +         D D S  L    L  +    ++             G   
Sbjct: 585 ALSDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVMAIVDVEQPAGVIVQFGGQTP 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T+  ++  A   ++ +          P   +       +     
Sbjct: 645 LKLAESLEAAGVPIIGTNPDMIDLAEDRERFQKLLHELKLLQPENGTARSTDEALAVAAN 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+  ++ +   + ++   +    +L++++  + IEL    +
Sbjct: 705 IGYPVVVRPSYVLGGRAMQVVHNEKGLLRYMREAVQASPDHPVLLDRFLNNAIELDVDAL 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  I   I  EV+R       A+  +G
Sbjct: 765 SDGKRVVIGGIMEHIEEAG---VHSGDSACCLPPHSISDAIIDEVRRQTAALGLALHVKG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F        ++ LE+N +   T     P ++   G    ++   +
Sbjct: 822 LLNIQFAV--QGETIYVLEVNPRASRT----VPFVSKATGKPLAKIAARI 865


>gi|116748159|ref|YP_844846.1| D-alanine--D-alanine ligase domain-containing protein
           [Syntrophobacter fumaroxidans MPOB]
 gi|116697223|gb|ABK16411.1| D-alanine--D-alanine ligase domain protein [Syntrophobacter
           fumaroxidans MPOB]
          Length = 357

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 57/315 (18%), Positives = 114/315 (36%), Gaps = 29/315 (9%)

Query: 11  EREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL---KPDLAFNVLH---GNFGE 64
           E +V L    A ++AL   G     + ++  +   +  L   +P L FN++    G+   
Sbjct: 44  EADV-LVQAGAVSTALAALGHLPRLLALNMDLQAAIDELLGIRPRLVFNLVESINGSGRF 102

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------LVNRFTM 118
                +ILE L IP+T +   A   + +K+ +K+++   G+   P          +  + 
Sbjct: 103 IHFAPSILEHLRIPFTGARADAILSTSNKLLAKRLLDRAGIRTPPWFEKPGGARRHPGSP 162

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                     V +    G     +V  +D    ++ +       G +   E +++G E  
Sbjct: 163 FPAGTCLVKSVWEHASIGIDENSLVQARDAGDLMEPILQREAMLGGEWFAESFIEGREFN 222

Query: 179 ---------CGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLD-----I 223
                      V+  A +              Y  K+ +        P           +
Sbjct: 223 ISLIEEAGRVRVLPPAEILFRGFPSDTPKIVGYRAKWETGSFEFRNTPRTFEFAAEDEGL 282

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            + +  ++    +  G  G +R DF  D +    + LE+N  P ++P + F   AA AG 
Sbjct: 283 LRRLSEISMNCWELFGLNGYARVDFRVDGVE-VPWVLEVNANPCLSPDAGFIAAAARAGL 341

Query: 284 SFRELLLWMVEDASC 298
           S+ +++  +   A C
Sbjct: 342 SYTDVIDRIASGARC 356


>gi|213419729|ref|ZP_03352795.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp. enterica
           serovar Typhi str. E01-6750]
          Length = 53

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 12/38 (31%), Positives = 23/38 (60%)

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             EIN  PG T +S++P++   +G  + +L+  ++E A
Sbjct: 2   INEINTLPGFTNISMYPKLWQASGLGYTDLISRLIELA 39


>gi|149921039|ref|ZP_01909499.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica
           SIR-1]
 gi|149818171|gb|EDM77627.1| carbamoyl-phosphate synthase, large subunit [Plesiocystis pacifica
           SIR-1]
          Length = 1091

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  I+ +                       +  VL   KPD    
Sbjct: 29  SGTQAIKALRQEGYEVVLINSNPATIMTDPELADETYVRPLTPDDLDQVLRESKPDAVLP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+      ++  A   D+ ++  V     VP    
Sbjct: 89  TVGGQTALNLALEAGRRGIFEHHGVELLGAPLEVIEKAEDRDRFKALMVSIGLEVPRSFY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D+   I  P +I+P       G  +    +        + S +   + LIE+
Sbjct: 149 VHDMAEARDALDEIGFPAIIRPSFTMGGAGAAIAYNREEFEKMAAHALSESLRSEALIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +        
Sbjct: 209 SVLGWKEYELEVMRDGKDNFVVICAIENLDPMGVHTGDSVTLAPALTLTDKEYQHMRTAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A + +      G     F FDP S ++  +E+N  P ++  S     +   G+   +   
Sbjct: 269 AAVVNAVGVTTGGCNIQFAFDPESGRMIVIEMN--PRVSRSS--ALASKATGFPIAKFAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.075,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
            +  H I  P +++P        + ++  D+ +   +  +   +    +LI+++    +E
Sbjct: 702 FNIAHQIGFPVLVRPSYVLGGRAMEIVHSDEQLDSYMKLAVRASPDHPVLIDEFLAHAVE 761

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                + D    V    +   +           ++  + P  +  +  K ++       +
Sbjct: 762 FDVDAVADGKDVVIAGIMEHVEEAGIHSG---DSTCCMPPVSVGHETLKVIRETTESLAR 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G  G+    +       +++ LE+N +   T     P ++   G +F ++
Sbjct: 819 ELGVVGLMNVQYAL--KGERLYILEVNPRGSRT----VPFVSKAVGTAFAKI 864


>gi|218232482|ref|YP_002368686.1| carbamoyl phosphate synthase large subunit [Bacillus cereus B4264]
 gi|226700920|sp|B7H6M2|CARB_BACC4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|218160439|gb|ACK60431.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus B4264]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +L+   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|30021975|ref|NP_833606.1| carbamoyl phosphate synthase large subunit [Bacillus cereus ATCC
           14579]
 gi|296504381|ref|YP_003666081.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           BMB171]
 gi|81433833|sp|Q819S3|CARB_BACCR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|29897531|gb|AAP10807.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           14579]
 gi|296325433|gb|ADH08361.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           BMB171]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +L+   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|206976709|ref|ZP_03237613.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           H3081.97]
 gi|217961307|ref|YP_002339875.1| carbamoyl phosphate synthase large subunit [Bacillus cereus AH187]
 gi|222097332|ref|YP_002531389.1| carbamoyl phosphate synthase large subunit [Bacillus cereus Q1]
 gi|226700921|sp|B7HLM0|CARB_BACC7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813558|sp|B9IVW3|CARB_BACCQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|206745019|gb|EDZ56422.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           H3081.97]
 gi|217067322|gb|ACJ81572.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH187]
 gi|221241390|gb|ACM14100.1| carbamoyl-phosphate synthase [Bacillus cereus Q1]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +LE   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|52141604|ref|YP_085227.1| carbamoyl phosphate synthase large subunit [Bacillus cereus E33L]
 gi|81824210|sp|Q636E0|CARB_BACCZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|51975073|gb|AAU16623.1| carbamoyl-phosphate synthase [Bacillus cereus E33L]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +LE   +    + + A   + D+   + ++     P  PS  
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQDLNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|254721419|ref|ZP_05183208.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           A1055]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMRIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|170688824|ref|ZP_02880027.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0465]
 gi|170667179|gb|EDT17939.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0465]
          Length = 1073

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 581 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 641 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 761 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 818 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 861


>gi|196038725|ref|ZP_03106033.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           NVH0597-99]
 gi|196030448|gb|EDX69047.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           NVH0597-99]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|167636429|ref|ZP_02394728.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0442]
 gi|254739826|ref|ZP_05197519.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Kruger B]
 gi|167528171|gb|EDR90958.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0442]
          Length = 1071

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 579 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 639 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 699 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 759 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 815

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 816 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 859


>gi|196035930|ref|ZP_03103332.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W]
 gi|218905016|ref|YP_002452850.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820]
 gi|254683404|ref|ZP_05147264.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           CNEVA-9066]
 gi|226700918|sp|B7JJX3|CARB_BACC0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|195991579|gb|EDX55545.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus W]
 gi|218534976|gb|ACK87374.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus AH820]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|118479107|ref|YP_896258.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|196047414|ref|ZP_03114626.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB108]
 gi|225865868|ref|YP_002751246.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB102]
 gi|166989832|sp|A0RHQ8|CARB_BACAH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813557|sp|C1EPQ0|CARB_BACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|118418332|gb|ABK86751.1| carbamoyl-phosphate synthase large subunit [Bacillus thuringiensis
           str. Al Hakam]
 gi|196021722|gb|EDX60417.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB108]
 gi|225790296|gb|ACO30513.1| carbamoyl-phosphate synthase, large subunit [Bacillus cereus
           03BB102]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|30263889|ref|NP_846266.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Ames]
 gi|47529318|ref|YP_020667.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           'Ames Ancestor']
 gi|49186736|ref|YP_029988.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Sterne]
 gi|65321214|ref|ZP_00394173.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Bacillus anthracis str. A2012]
 gi|165872300|ref|ZP_02216937.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0488]
 gi|167641115|ref|ZP_02399370.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0193]
 gi|170708780|ref|ZP_02899216.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0389]
 gi|177654894|ref|ZP_02936611.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0174]
 gi|190565897|ref|ZP_03018816.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227813205|ref|YP_002813214.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. CDC 684]
 gi|229602930|ref|YP_002868122.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0248]
 gi|254735926|ref|ZP_05193632.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Western North America USA6153]
 gi|254751016|ref|ZP_05203055.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Vollum]
 gi|254756681|ref|ZP_05208710.1| carbamoyl phosphate synthase large subunit [Bacillus anthracis str.
           Australia 94]
 gi|81837832|sp|Q81WF2|CARB_BACAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813555|sp|C3P656|CARB_BACAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813556|sp|C3L740|CARB_BACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|30258533|gb|AAP27752.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. Ames]
 gi|47504466|gb|AAT33142.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. 'Ames Ancestor']
 gi|49180663|gb|AAT56039.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. Sterne]
 gi|164711976|gb|EDR17516.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0488]
 gi|167510895|gb|EDR86286.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0193]
 gi|170126265|gb|EDS95156.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0389]
 gi|172080405|gb|EDT65492.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0174]
 gi|190562816|gb|EDV16782.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005069|gb|ACP14812.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. CDC 684]
 gi|229267338|gb|ACQ48975.1| carbamoyl-phosphate synthase, large subunit [Bacillus anthracis
           str. A0248]
          Length = 1072

 Score = 71.4 bits (173), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|317152916|ref|YP_004120964.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           aespoeensis Aspo-2]
 gi|316943167|gb|ADU62218.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 1078

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                      +V  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLINSNPASIMTDPELADRTYIEPIEPETVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +       +       +E+   +   +  A S ++ R+        VP    
Sbjct: 89  TLGGQTGLNTALAVAEMGVLDRFNVELIGANIAAINKAESREEFRAAMENIGLSVPESGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       +I+ P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CRNMEDVRRWGQIIAFPIIVRPAYTLGGSGGGVAYNMEELEEICANGLALSMKHEIMLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SILGWKEYELEVMRDRNDNCVIICSIENLDPMGVHTGDSVTVAPAQTLTDDEYQMMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/266 (12%), Positives = 87/266 (32%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   +PD       G    +  ++ +   + +  T    + 
Sbjct: 618 DKLYFEPLTF---EDVMNIIDFEQPDGVIVQFGGQTPLNLALRLMRAGVPLIGTSPDAID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   + +      +    +  P V++P       G+ ++  
Sbjct: 675 RAEDRERFKQFLNKLHLKQPPNGTAMSMTAAKEIAQGLGFPLVLRPSYVLGGRGMDIVYS 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                     S+  +     LI+++++  IE+    + D         +   +       
Sbjct: 735 MDEFEAYFRDSARVSPEHPTLIDKFLEYAIEVDVDALADGEDVYIGGVMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +++ + P  +  ++ +E++R      + +G  G+    F       +VF +E+N +
Sbjct: 795 ---DSASVLPPYSLSSEMIREIERQTVAMARELGVVGLMNVQFAI--KDGEVFIIEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    +L   
Sbjct: 850 ASRT----VPFVSKATGVPLAKLATR 871


>gi|52549390|gb|AAU83239.1| carbamoyl-phosphate synthase large subunit [uncultured archaeon
           GZfos27B6]
          Length = 1090

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 53/311 (17%), Positives = 104/311 (33%), Gaps = 45/311 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 50  SGTQACKALKEEGYEVVLVNSNPATIMTDPGMADQTYIEPLTVENVEEIIAKERPDALLP 109

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G        +   + IL    +        A     D++  K+ ++   + +  S  
Sbjct: 110 NLGGQTGLNLSAELSKRGILAKYGVELIGVEADAIERGEDRIVFKETMTKLDISMPESSP 169

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P VI+P       G  ++   + +   + +  S +   Q+L+E+
Sbjct: 170 AYSVEEAEEIAQELGYPVVIRPAYTMGGTGGGIVYNVEELKTIVTRGISASLIGQVLVEE 229

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
            V G       +                     +   + +S  V P   I  ++ +++Q 
Sbjct: 230 SVLG--WEELELEVIRDKKGNKITVCFIENVDPMGVHTGDSFCVAPMLTIGEELQRKLQE 287

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS--------IFPEM---A 278
           L++    AIG  G +   F  +P   +V  +EIN +   T  S         FP     A
Sbjct: 288 LSYRIVDAIGVLGGTNIQFAHNPEDGRVVVIEINPR---TSRSSALASKATGFPIARISA 344

Query: 279 A-YAGYSFREL 288
               G +  EL
Sbjct: 345 KLAVGITLDEL 355



 Score = 39.9 bits (91), Expect = 0.45,   Method: Composition-based stats.
 Identities = 35/266 (13%), Positives = 76/266 (28%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP+       G    +   +     ++I  T    + 
Sbjct: 628 DKLYFEPLTV---EDVLSIYEKEKPEGVIVQFGGQTPLNIARELHEAGVKILGTSPDSIH 684

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK-GGSSLGIIVIK 145
            A   +  R   +  S   P   +       +     I  P +++P    G     IV  
Sbjct: 685 LAEDRELFREMMIKLSIPQPEGGTARSVEEALAVARKIGFPVMVRPSFVLGGRGMEIVYD 744

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +   +               L+ +     IE     + D S       +   +       
Sbjct: 745 EKMLLDYAKAAVDVSPEYPMLIDKFLEHAIETEVDAIADGSDVYIAAVMEHIELAG---V 801

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  I      +++        A+   G+    +     + KV+ LE N +
Sbjct: 802 HSGDSACVIPPRNISKGNLAKIEDYTKKIADALEVVGLMNIQYAI--ANGKVYILEANPR 859

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    ++   
Sbjct: 860 ASRT----VPLVSKVTGVPIAKIATK 881


>gi|227358194|ref|ZP_03842535.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC
           29906]
 gi|227161530|gb|EEI46567.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis ATCC
           29906]
          Length = 1075

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  DP + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    E + +  T    +  A   ++ +          P   ++      +D    
Sbjct: 648 LKLARALEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  DI   +++        +G +G
Sbjct: 768 CDGQQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KGNDVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|2231985|gb|AAB62174.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 105/269 (39%), Gaps = 43/269 (15%)

Query: 30  GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55
            F    I + ++    L                                     + D+AF
Sbjct: 1   KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAF 60

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    ++++
Sbjct: 61  PVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDK 120

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G 
Sbjct: 121 GDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILIEQAISGC 178

Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ C VMG+    +                    E +  S N+   +PA IP++    VQ
Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQ 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             A   ++ +GCRG++R D         V
Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|302391678|ref|YP_003827498.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
 gi|302203755|gb|ADL12433.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
          Length = 1070

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 97/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G +V  ++ +                       V  ++   KPD    
Sbjct: 29  SGSQACRALKDEGVEVILVNSNPATIMTDQNIADRVYIEPLTAEVVAKIIKQEKPDGLLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +   +   +       +E+  T    +  A   DK           V     
Sbjct: 89  TLGGQTGLNIASELARKGLLEELDIEMLGTPLDTIEKAEDRDKFIQMLHEIDEPVLESKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P +I+P       G  V    + +     +    +  D++LIE+
Sbjct: 149 ADSIEEAKEIAEGIGYPVIIRPAYTMGGTGGGVADNPEELEEVASRGLKHSLIDEVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIKGW-KEVEYEVMRDGANNCITVCNMENFDPVGIHTGDSIVVAPSQTLSDKEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     F  DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIRELGIEGGCNVQFALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVST 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGMTLAEIENAITKK 341



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 37/289 (12%)

Query: 15  SLSSGKACASALEDAGFKVSQ-----------IDV----------DRSVGLVLAHLKPDL 53
           S+ S      AL + G++               D              +  ++ H  P+ 
Sbjct: 575 SVHSA----WALHEEGYESIIANNNPETVSTDFDTSDRLYFEPLTKEDMLNIIEHEDPEG 630

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                 G    +       E +EI  T    +  A   DK  +         P   ++  
Sbjct: 631 VVVQFGGQTSINLAKPLADEGVEILGTSVEAIDIAEDRDKFMNLLDELDIPTPTGSTVYS 690

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                 +   I  P V++P        + V+ K++ +   +   +  +    LL+++Y+ 
Sbjct: 691 VPEAKKTATEIGYPVVVRPSYVLGGRAMEVVYKEEELMQYMETEAKVSEEHPLLVDKYIT 750

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
           G E+    + D    +     P    +       S +S  V P +   +   +++     
Sbjct: 751 GKEIEIDAISDGEDVLI----PGIMEHIERAGVHSGDSIAVYPEQTLSEDEREQLIDYTV 806

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
              +A+  +G+    ++       V+ +E+N       P ++ V+  P 
Sbjct: 807 KLGRALNVKGLINIQYVV--ADGTVYVIEVNPRSSRTIPYLSKVTGVPM 853


>gi|152978227|ref|YP_001343856.1| carbamoyl phosphate synthase large subunit [Actinobacillus
           succinogenes 130Z]
 gi|150839950|gb|ABR73921.1| carbamoyl-phosphate synthase, large subunit [Actinobacillus
           succinogenes 130Z]
          Length = 1069

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D +            V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPDMADVTYIEPIQWQIVEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F    +    +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTFDEAWKAQEKVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 96/289 (33%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVHTERPWGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++ +      +   P   +    +  +     
Sbjct: 642 LKLANALHDNGVNIIGTSADSIDAAEDRERFQKILQDLNLKQPNNRTARNAQEAVTLADE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++     +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  +P  +  E++R      +A+   G
Sbjct: 762 CDGTDVVMGGIMQHIEQAGIHSG---DSACSLPPYSLPKGVQDEIRRQTAAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  +F LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QNDVIFVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861


>gi|85708773|ref|ZP_01039839.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
 gi|85690307|gb|EAQ30310.1| hypothetical protein NAP1_06020 [Erythrobacter sp. NAP1]
          Length = 338

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 54/290 (18%), Positives = 104/290 (35%), Gaps = 18/290 (6%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
               ++LE  G  +   D   S  ++      D  F +L+  G    + L+  +  +  +
Sbjct: 45  HEVRTSLEQLGLNLHLAD---SYDVLFTRPDVDFVFPLLNRGGFVNSEMLIPVLCNMHRL 101

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP----PYVIKPL 133
           PY  +      L  DK  SK V +  GVP  P     R     +  + P     +VIKP 
Sbjct: 102 PYLGAMPFLRGLGDDKSVSKLVATHAGVPTAPWFCFRRGAPVQESDLPPSPDGRWVIKPN 161

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS-----LD 188
              +S GI        +   +       H    ++E Y+DG ++ C  +           
Sbjct: 162 ASSASWGISDAYDWNGVTNSIADIHGQGHD--AIVEPYLDGYDVQCAFITMHGKPVALPM 219

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVL--PAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           +          ++Y  K   + +T           +    ++ +A    +        R 
Sbjct: 220 LWYERENTQKLWTYYEKRDLVPNTEKAALKRFDHAEFAPRIEEMAHKFAREFLPFDYGRI 279

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +F  D  +  + ++EIN+   +    +  + A  AG+S  +LL  ++ +A
Sbjct: 280 EFRVDLKTGDINFIEINLNCNLWSEKVMAKAAKEAGFSHGDLLETLLAEA 329


>gi|49479112|ref|YP_037948.1| carbamoyl phosphate synthase large subunit [Bacillus thuringiensis
           serovar konkukian str. 97-27]
 gi|81828222|sp|Q6HES8|CARB_BACHK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49330668|gb|AAT61314.1| carbamoyl-phosphate synthase [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 1072

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I            I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 IHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +                 + Y+ ++  
Sbjct: 209 SIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 860


>gi|260892280|ref|YP_003238377.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
 gi|260864421|gb|ACX51527.1| carbamoyl-phosphate synthase, large subunit [Ammonifex degensii
           KC4]
          Length = 1075

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D +              V  VL   +PD    
Sbjct: 29  SGTQACRALREEGLEVVLVNSNPATIMTDPNMADRVYIEPLTPEFVAKVLRKERPDGLLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +       +       +E+  T    +  A   +  +         +P    
Sbjct: 89  TLGGQVGLNLAVELSRMGVLDELGVELLGTPLETIEKAEDRELFKETMRAIGEPIPESRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P V++P       G  + + ++ +     +    +   Q+L+EQ
Sbjct: 149 VSRLEDAVSFAREIGFPVVVRPAYTLGGTGGGIARNEEELLEIAARGLKHSLIGQILVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D         +       ++  +        +    Y+ ++R 
Sbjct: 209 CVSGWKEIEFEVMRDGADNCITVCCMENLDPMG-IHTGDSIVVAPSQTLTDKEYQMLRRA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G RG     F  DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 AIKIIRALGIRGGCNIQFALDPRSLRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 92/293 (31%), Gaps = 29/293 (9%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C  AL + G K   I+                     V   V  VL   KP+       G
Sbjct: 579 CVWALREEGIKAIIINNNPETVSTDFDTADRLYFEPLVAEDVLNVLEKEKPEGVLVQFGG 638

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +          +I  T    +  A   +K        +   P   +       +  
Sbjct: 639 QTAINLAKPLAAAGFKILGTAVEDIDRAEDREKFDRVLEAENIPRPPGGAAKSPEEALAV 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++   + +   +  ++  +    +L+++Y+ G E+   
Sbjct: 699 AERVGFPVLVRPSYVLGGRAMEIVYNREELEEYMRFAARVSPEYPVLVDKYIFGKEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +           +     P  +  ++ ++V        +A+  
Sbjct: 759 AISDGEDVLIPGIMEHIERAGIHSG---DSIAVYPPRTLNGEVVEQVVSYTTALARALRV 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           RG+    ++ D    KV+ LE+N +   T     P ++   G     L + ++
Sbjct: 816 RGLLNIQYVVDAE-GKVYVLEVNPRASRT----VPYLSKITGIPMIPLAVKVI 863


>gi|197283936|ref|YP_002149808.1| carbamoyl phosphate synthase large subunit [Proteus mirabilis
           HI4320]
 gi|194681423|emb|CAR40261.1| carbamoyl-phosphate synthase large chain [Proteus mirabilis HI4320]
          Length = 1075

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  DP + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    E + +  T    +  A   ++ +          P   ++      +D    
Sbjct: 648 LKLARALEAEGVPVIGTSPDAIDKAEDRERFQKAVDKLGLKQPENATVTTLEEAVDKAKS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  DI   +++        +G +G
Sbjct: 768 CDGQQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDIMRKQVRELAFELGVKG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KGNDVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|94500164|ref|ZP_01306698.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65]
 gi|94427737|gb|EAT12713.1| carbamoyl-phosphate synthase large subunit [Oceanobacter sp. RED65]
          Length = 1073

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D               +V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSMADATYIEPITVEAVTKIIEQERPDVLLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +LE   +    +       + D+ R  + +   G+    +  
Sbjct: 89  TMGGQTALNCALGLEKAGVLEKYGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPKASI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEAWEVQKDLGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          ++       
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLSDKELQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/328 (12%), Positives = 106/328 (32%), Gaps = 52/328 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39
           + VL GG +         G+          +AL  ++ G++   +         D D   
Sbjct: 562 IIVLGGGPN-------RIGQGIEFDYCCVHAALASKEEGYEAIMVNCNPETVSTDYDTSD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  +    KP        G        +     + I  T    +  A  
Sbjct: 615 RLYFEPLTLEDVLEIADKEKPKGVIVQYGGQTPLKLANELEAAGVPIIGTSPEAIDRAED 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++   +  +     I  P V++P        + ++  + ++
Sbjct: 675 RERFQQMIQRLGMKQPKNSTVTSEQEAIQKAAEIGYPLVVRPSYVLGGRAMEIVNDETAL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++ +++  +E+    + D    V    +   +           
Sbjct: 735 VRYMTEAVKVSNDSPVLLDYFLNQAVEVDIDAVCDGEDVVIGAIMQHIEQAGIHSG---D 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----V 264
           ++  + P  +P D+  E++       + +G  G+  +   +     +++ +E+N      
Sbjct: 792 SACSLPPYSLPEDVQDEMRAQVAAMARELGVVGLMNTQLAY--QDGEIYVIEVNPRASRT 849

Query: 265 QPGMTP---VSIFPEMAAYA-GYSFREL 288
            P ++     S+    A    G + +EL
Sbjct: 850 VPFVSKCIGTSLAAIAAKVMTGKTLKEL 877


>gi|33151478|ref|NP_872831.1| carbamoyl phosphate synthase large subunit [Haemophilus ducreyi
           35000HP]
 gi|71152355|sp|Q7VP67|CARB_HAEDU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|33147698|gb|AAP95220.1| carbamoyl-phosphate synthase, large subunit [Haemophilus ducreyi
           35000HP]
          Length = 1075

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D            +++  ++   +PD    
Sbjct: 29  SGAQAVKALREEGYKVILVNSNPATIMTDPDMADVTYIEPIQWQTLEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALALSKNGVLKKYGVELIGATEDAIDKAEDRGRFKDAMTKIGLNTPKSFI 148

Query: 113 VNRFT--MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFEEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 89/280 (31%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AGF+   +         D D              V  ++   +P        G   
Sbjct: 582 ALREAGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIYKEQPWGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A    + +          P   +       +     
Sbjct: 642 LKLAHALEQNGVNIIGTSADSIDAAEDRARFQKILTDLGLKQPNNRTARNAEEAVKLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++     +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNNYMQEAVSVSNDSPILLDHFLKNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D+   +    +   +           ++  +    +  ++  E++R       A+G +G
Sbjct: 762 CDSEQVLIGGIMQHVEQAGIHSG---DSACSLPAYSLTNEVQGEIRRQTSAMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +    F     +  ++ LE+N +   T     P ++   G
Sbjct: 819 LMNVQFAV--QNETIYVLEVNPRASRT----VPFVSKATG 852


>gi|227904290|ref|ZP_04022095.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus ATCC 4796]
 gi|227867938|gb|EEJ75359.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus ATCC 4796]
          Length = 1062

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    +P+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A                 P   +   +   +++
Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++   + +   L           +L++ Y+DG E    
Sbjct: 697 AEKLDYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     +I +++  +       + C
Sbjct: 757 AISDGYDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEIKEKITEVTKKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRIIRQEYPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G              IL+ L I    + + +   + D+ + K +       VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCKELGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|325111080|ref|YP_004272148.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
 gi|324971348|gb|ADY62126.1| D-alanine--D-alanine ligase domain protein [Planctomyces
           brasiliensis DSM 5305]
          Length = 349

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 56/310 (18%), Positives = 104/310 (33%), Gaps = 28/310 (9%)

Query: 10  SEREVSLSSGKACASALEDAGFK----VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED 65
           SER+V L   +A ++A+   G +       +D+ R +   L   +PD  FN++    G D
Sbjct: 23  SERDV-LVQAEAVSAAVSRMGHRPRSLACTLDLQR-LQRKLIERRPDCVFNLVESLDGSD 80

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
            L+  +  LLE         ++   +                 P+   +        L+ 
Sbjct: 81  RLMPLVPLLLEQLQIPYTGSSAVSIVQSSDKLSAKHLLRTASLPTPGWSDGEDVPDSLLH 140

Query: 126 PPYVIKPLKGGSSL-----GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC- 179
            P ++K +   +S       I        +   L    +   G     E+++DG E    
Sbjct: 141 RPVIVKAIHEHASFGLDDSSIQTFHSASQLREVLDDRLAAT-GQPHFAEEFIDGREFNVS 199

Query: 180 --------------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                          +        +   V  +  +  +              +   D+  
Sbjct: 200 LLAGSRGPVVLPPAEIDFSFLPSESLRIVGYAAKWEEDSAEYVGTPRRFDLPEQDRDLVG 259

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           E+Q L        G +G +R DF  D   R+ + LEIN  P + P + F      AG S+
Sbjct: 260 EIQELCRRCWNVFGLKGYARVDFRVDTQ-RRPWILEINGNPCLAPDAGFAAALGAAGLSY 318

Query: 286 RELLLWMVED 295
              L  ++++
Sbjct: 319 DAGLQKILQN 328


>gi|121608130|ref|YP_995937.1| carbamoyl-phosphate synthase large subunit [Verminephrobacter
           eiseniae EF01-2]
 gi|121552770|gb|ABM56919.1| carbamoyl-phosphate synthase large subunit [Verminephrobacter
           eiseniae EF01-2]
          Length = 1089

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I              DV        +++  ++A  +PD    
Sbjct: 30  SGVQACKALREEGYRVILINSNPATIMTDPATADVTYIEPITWQTIEKIIAKERPDAILP 89

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+   +    +   A   + D+++ K  ++  G+    S  
Sbjct: 90  TMGGQTALNCALDLWHNGVLDKYRVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 150 AHSMEQAWAVQKDLGFPAVIRPSFTLGGTGGGIAYNPEEFETICKRGLQASPTNELLIEE 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 210 SLLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 269

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G +   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 270 LAVLREIGVDTGGANVQFAVNPEDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 325

Query: 291 WM 292
            +
Sbjct: 326 KL 327



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 96/290 (33%), Gaps = 28/290 (9%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +           D+             +  ++   KPD       G   
Sbjct: 590 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDMLEIVDKEKPDGVIVQYGGQTP 649

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +    E + I  T   ++ +A   ++ +          P   +       ++    
Sbjct: 650 LKLALGLAAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAQALEKAAS 709

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++ + + +   + ++   ++   +L++++++   + C V  
Sbjct: 710 LGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIECDVDC 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              L          +       +S  ++  + P  +      E++R +    + +   G+
Sbjct: 769 LRDLQGQTFIGGVMEHIEQAGVHSGDSACSLPPYYLSGATVDELKRQSAAMAKGLNVVGL 828

Query: 244 SRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F    ++ +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 829 MNVQFAIQEVNGQDVIYVLEVNPRASRT----VPFVSKATGIPLAKVAAR 874


>gi|294340423|emb|CAZ88804.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Thiomonas sp. 3As]
          Length = 1074

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVETIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A  ++ D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHHNGVLGKYGVELIGAKPAAIDMAEDRQKFKQAMTRIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTLEEAWGVQKTIGFPVIIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/296 (11%), Positives = 88/296 (29%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL     G++   +         D D              V  V+   +P       
Sbjct: 578 VHAALAMRADGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKERPTGVIVQY 637

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++  A   ++ +          P   +       +
Sbjct: 638 GGQTPLKLALDLEANGVPIIGTSPDMIDMAEDRERFQHLVEQLGLLQPPNRTARSEAEAL 697

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE 
Sbjct: 698 TKAEEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 757

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +       +   +       +S  ++  + P  +       ++         
Sbjct: 758 DVDAICDGTEVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAATVARIKEQTVKLAHG 814

Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F    L  +  +F LE+N +   T     P ++   G    ++   
Sbjct: 815 LKVVGLMNVQFAIQQLDGEDRIFLLEVNPRASRT----VPFVSKATGLQLAKIAAR 866


>gi|254468615|ref|ZP_05082021.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium
           KB13]
 gi|207087425|gb|EDZ64708.1| carbamoyl-phosphate synthase, large subunit [beta proteobacterium
           KB13]
          Length = 1064

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +              V  ++A   PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPNLADATYIEPIQWDIVEKIIAKENPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     ILE   +    +   A   + D+   K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDRHGILEKYNVELIGASKQAIDKAEDRQLFKEAMNKIGLSSARSAI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  I  P +I+P       G  +            +    +  ++LLIE+
Sbjct: 149 AHSMEEAHQVQASIGYPVIIRPSFTMGGSGGGIAYNKDEFIEICERGLDASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKNDNCIIICSIENLDPMGVHTGDSITIAPAQTLTDKEYQIMRSAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPSDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 93/286 (32%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   +         D D              V  ++    PD       G   
Sbjct: 582 ALKEEGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIIHIENPDGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T    +  A   ++ +   V      P   +       +     
Sbjct: 642 LKLAKGLEAAGVKIVGTTPEDIDVAEDRERFQKILVDLGLNQPPNRTARTPEEAIQLAAE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   + ++   +H   +L++++  D  E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEESDLQRYMTEAVKVSHESPVLLDRFLNDAQEIDVDAI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   I K++ +   +  +A+   G
Sbjct: 762 SDGEDVVVGGIMQHIEQAG---VHSGDSACSLPPFDLSETIQKDLIKQTKMLAKALKVNG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        ++ LE+N +   T     P ++   G    ++
Sbjct: 819 LMNIQFAI--QGDTIYILEVNPRASRT----VPFVSKAIGKPLAKI 858


>gi|161510953|ref|YP_089428.2| carbamoyl phosphate synthase large subunit [Mannheimia
           succiniciproducens MBEL55E]
          Length = 1070

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F    +    +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++ +      +   P   +    +  +   + 
Sbjct: 642 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  + ++I  E++R      +A+   G
Sbjct: 762 CDGEQVIIGGIMQHIEQAGIHSG---DSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QNDVIYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861


>gi|52308343|gb|AAU38843.1| CarB protein [Mannheimia succiniciproducens MBEL55E]
          Length = 1100

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            ++V  ++   +PD    
Sbjct: 59  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIHWQTVEKIIEKERPDAILP 118

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 119 TMGGQTALNCALDLSKNGVLKKYGVELIGATEDAIDKAEDRGRFKEAMAKIGLNTPKSFV 178

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F    +    +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 179 CHSFDEAWKAQEEVGFPTLIRPSFTMGGSGGGIAYNRDEFQAICERGFEASPTHELLIEQ 238

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 239 SVLGWKEYEMEVVRDKADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 298

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 299 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 354

Query: 291 WM 292
            +
Sbjct: 355 KL 356



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 612 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHVEKPWGVIVHYGGQTP 671

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++ +      +   P   +    +  +   + 
Sbjct: 672 LKLANALHANGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNTQEAVGLANE 731

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 732 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 791

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  + ++I  E++R      +A+   G
Sbjct: 792 CDGEQVIIGGIMQHIEQAGIHSG---DSACSLPPYSLSMEIQDEIRRQTAAMARALNVVG 848

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 849 LMNVQFAV--QNDVIYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 891


>gi|332288950|ref|YP_004419802.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis
           UMN179]
 gi|330431846|gb|AEC16905.1| carbamoyl phosphate synthase large subunit [Gallibacterium anatis
           UMN179]
          Length = 1062

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPIRWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     IL+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGILQKYNVELIGATEDAIDKAEDRGRFKEAMAKIGLHTPKSFV 148

Query: 113 VNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F     +Q  +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTFAEAWQAQEQVGFPTLIRPSFTMGGSGGGIAYNREEFQAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 88/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIIHIENPYGVIVHYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T +  + +A    + +          P   +       +     
Sbjct: 642 LKLANKLQENGVNIIGTSADSIDAAEDRQRFQQILNDLKLKQPSNRTAKNAEEAVKLADE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +  P V++P        + ++     +   + ++   +    +L++ ++D  IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNVDELNKYMREAVQVSEDSPILLDHFLDNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  +    +   I  E++R       A+   G
Sbjct: 762 CDGKQVVIGGIMQHVEQAGIHSG---DSACSLPAYSLSQQIQDEIRRQTTEMAFALKVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--KGDTVYVLEVNPRASRT----VPFVSKATGVPLAKIAAR 861


>gi|226329196|ref|ZP_03804714.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198]
 gi|225202382|gb|EEG84736.1| hypothetical protein PROPEN_03099 [Proteus penneri ATCC 35198]
          Length = 563

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWQVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +      ++    +  ++LLI++
Sbjct: 149 AHNLDEAFAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICIRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  DP + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVDPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|120556265|ref|YP_960616.1| carbamoyl-phosphate synthase, large subunit [Marinobacter aquaeolei
           VT8]
 gi|120326114|gb|ABM20429.1| carbamoyl-phosphate synthase large subunit [Marinobacter aquaeolei
           VT8]
          Length = 1072

 Score = 71.1 bits (172), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     ++V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWKTVEKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLEKHGVLEKHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRAAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHSMDEAWKISEDIGFPCIIRPSFTMGGSGGGIAYNKDEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 99/322 (30%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39
           + V+ GG +         G+          +AL   + G++   I         D D   
Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G              + I  T    +  A  
Sbjct: 615 RLYFEPITLEDVLEIINVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++  +   + +   I  P V++P        + ++  +  +
Sbjct: 675 RERFQQMIQRLGLKQPENATVRSHEEGIVAAREIGYPLVVRPSYVLGGRAMEIVYDETEL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L++ +++  IE+    + D +  V    +   +       +S  
Sbjct: 735 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGTDVVIGGIMQHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +   +  E++         +   G+      +     +++ +E+N +   T
Sbjct: 792 SACSLPPYSLSRQVQDEMREAVKKMAIELDVIGLMNVQLAY--QDGEIYVIEVNPRASRT 849

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S   +   
Sbjct: 850 ----VPFVSKAIGVSLAAVAAR 867


>gi|152976247|ref|YP_001375764.1| carbamoyl phosphate synthase large subunit [Bacillus cereus subsp.
           cytotoxis NVH 391-98]
 gi|189081825|sp|A7GRL1|CARB_BACCN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|152024999|gb|ABS22769.1| carbamoyl-phosphate synthase, large subunit [Bacillus cytotoxicus
           NVH 391-98]
          Length = 1072

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGYKVILVNSNPATIMTDTATADKVYIEPLTLEFVSRIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +EI  T    +  A   D  R+     +   P    
Sbjct: 89  TLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDLFRTLMQELNEPTPPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +++P       G  +   ++ +   +      +   Q L+E+
Sbjct: 149 VHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEIVTSGLKHSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNT 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 640 INLAAKLAERGVKILGTSLEDLDRAEDRDKFEAALTELGIPQPVGKTATTVEQAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKVKEQIIENTIALGRGLKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 817 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 860


>gi|328957537|ref|YP_004374923.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4]
 gi|328673861|gb|AEB29907.1| carbamoyl-phosphate synthase large chain [Carnobacterium sp. 17-4]
          Length = 1059

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADKVYIEPLTLEFVSQILRKERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  R+     +  VP    +
Sbjct: 90  LGGQTGLNMAMELSNSGILEELSIELLGTKLSAIDQAEDRDLFRTLMKELNEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +   +      +  +Q L+E  
Sbjct: 150 HTVAEALMFAEQIGFPLIVRPAFTMGGTGGGICDNEEELKEIVKNGLKLSPVNQCLVEIS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENFDPVGIHTGDSIVFAPTQTLTDKEHQMLRDSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVMHVIRLEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + +  T    L  A + +             P+  +       +   +
Sbjct: 639 AINLAEPLTNMGITLLGTSVEDLDRAENRNLFEQALNELQVPQPLGDTATTESEAVVIAN 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++     +   +  +   +    +LI++Y+ G E+    +
Sbjct: 699 RIGYPVLVRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERSG---VHSGDSMAVYPPQTLSKEIQDTIVDYTTRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNVQFVL--HDNTVYVIEVNPRASRT----VPFLSKVTGILMAQVATKAI 860


>gi|283783818|ref|YP_003363683.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium
           ICC168]
 gi|282947272|emb|CBG86817.1| carbamoyl-phosphate synthase large chain [Citrobacter rodentium
           ICC168]
          Length = 1074

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATAYAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           IS P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 ISYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|157164628|ref|YP_001467556.1| carbamoyl phosphate synthase large subunit [Campylobacter concisus
           13826]
 gi|112801156|gb|EAT98500.1| carbamoyl-phosphate synthase, large subunit [Campylobacter concisus
           13826]
          Length = 1086

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 87/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D +             S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPNFADATYIEPITKDSILRIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L+ ++    +   +         ++        +P      
Sbjct: 89  TMGGQVALNAAMEVFESGLLKDVKFLGANPEAIKKGEDRQIFKATMQKIGMDLPESRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+        G  V                 +   ++LIE+ +
Sbjct: 149 NMDDALNAANEIGFPLIIRASYTLGGAGSGVAYNMDEFKELANTGLDASPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 82/260 (31%), Gaps = 11/260 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+   KPD       G        +  +   +I  T + ++  A    
Sbjct: 615 FEPIDF-EHVRSVIEREKPDGVIVHFGGQTPLKFAKRLSVIGAKIIGTTARVIDVAEDRK 673

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P   +       +     I  P +++P        +  +  +  +  
Sbjct: 674 KFSEFINKIGVLQPKNDTATSLEEALQKAATIGYPVLVRPSYVLGGRAMRRVHNESELKE 733

Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            + ++   ++   +L++++  D  EL    + D         +   +           ++
Sbjct: 734 YMSEAVKVSNHSPVLLDKFLQDAKELDVDAICDGKEVYIGAIMEHIEEAGIHSG---DSA 790

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  ++ K+V+R        +G  G+    F       +++ +E+N +   T  
Sbjct: 791 CILPPMSLSDEMIKKVERQTRDIALNLGVVGLMNIQFAI--YENELYMIEVNPRASRT-- 846

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 847 --VPFVSKATGVPMAKVATR 864


>gi|145298639|ref|YP_001141480.1| carbamoyl phosphate synthase large subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
 gi|142851411|gb|ABO89732.1| carbamoyl-phosphate synthase, large subunit [Aeromonas salmonicida
           subsp. salmonicida A449]
          Length = 1074

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 92/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A   + D+      + S G+    +  
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMMGATADAIDKAEDRRGFDIAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNTEEFVEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAILREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 44.1 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
            A   AL + G++   +         D D              V  ++   KP       
Sbjct: 583 HAVL-ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEEVLEIVRIEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +S         P   ++      +
Sbjct: 642 GGQTPLKLARALEANGVPIIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            +   I+ P V++P        + ++  +  +     ++ S ++   +L+++++D   EL
Sbjct: 702 LTAERITYPLVVRPSYVLGGRAMEIVYDETDLRRYFAEAVSVSNESPVLLDRFLDDATEL 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           +   + P  +   I  E++         
Sbjct: 762 DVDAICDGVDVVIGGIMEHIEQAGIHSG---DSGCSLPPYTLSKKIQDEIREQVRKLALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|292489399|ref|YP_003532286.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora
           CFBP1430]
 gi|292898382|ref|YP_003537751.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           49946]
 gi|291198230|emb|CBJ45336.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           49946]
 gi|291554833|emb|CBA22698.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora
           CFBP1430]
 gi|312173564|emb|CBX81818.1| carbamoyl-phosphate synthase large chain [Erwinia amylovora ATCC
           BAA-2158]
          Length = 1074

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  ELL  +
Sbjct: 327 AVGYTLDELLNDI 339



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++   +
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAI 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   +++        +G RG
Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDVMRQQVEKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867


>gi|317055757|ref|YP_004104224.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315448026|gb|ADU21590.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1074

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 94/306 (30%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  ++  G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMNELGIGMPKSQV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          + +               +            +P  +  ++    
Sbjct: 209 CIFGWEELELEVVRDANNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQDM- 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              ++   ++I   G     F  +P   ++  +EIN +   T  S     +   G+    
Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPEDGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSAML 325



 Score = 43.7 bits (101), Expect = 0.032,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 99/292 (33%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL+  GF+   +         D D S  L    L  +     +H      G++       
Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVL-AIHDKEKPVGVIAQFGGQT 640

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122
                  L+   +    +      L+ D+   + ++   G+P+  + +       ++  +
Sbjct: 641 PLNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALEIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++  D+ + + +  +        +LI+++++         
Sbjct: 701 RIGYPVMVRPSYVLGGRGMEIVHDDEMMRVYMSAAVGVTPDRPILIDRFLN---HATECE 757

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241
            DA  D     VP    +       S +S  +LP+K   +     ++         +  +
Sbjct: 758 ADAISDGEHCFVPAVMEHIELAGVHSGDSACILPSKNLSEKQVATIKEYTKKIAVEMNVK 817

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    +        V+ LE N +   T     P ++     +  ++   ++
Sbjct: 818 GLMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCSINMVKIATEII 863


>gi|332140821|ref|YP_004426559.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii
           str. 'Deep ecotype']
 gi|327550843|gb|AEA97561.1| carbamoyl phosphate synthase large subunit [Alteromonas macleodii
           str. 'Deep ecotype']
          Length = 1073

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        +     +LE        +   A   + ++ R  Q + + G+    +  
Sbjct: 89  TMGGQTALNCALELDKHGVLEEFGCELIGATADAIDKAENRERFDQAMKNIGLECPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    I  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHSMDEAHDVLSRIGFPCIIRPSFTMGGTGGGIAYNIDEFNEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVDPKTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 95/294 (32%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  +P       
Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + +  T    +  A   ++ +      +   P   ++      +
Sbjct: 642 GGQTPLKLARALEAAGVPVIGTSPEAIDRAEDRERFQQMVNKLNLKQPANATVTNVEQAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++   + +   L ++   ++   +L+++++D  IE+
Sbjct: 702 TMAEEIGFPLVVRPSYVLGGRAMEIVYDIKDLKRYLNEAVKVSNDAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P DI   ++         
Sbjct: 762 DIDAICDGKEVVIGGIMEHIEQAG---VHSGDSACSLPPHSLPKDIQDVMREQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVVGLMNTQFAI--KDGEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 866


>gi|300715268|ref|YP_003740071.1| carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661]
 gi|299061104|emb|CAX58211.1| Carbamoyl-phosphate synthase large chain [Erwinia billingiae Eb661]
          Length = 1074

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +   Q +LE   +    +   A   + D+ R  + + S G+       
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVAMIGATADAIDKAEDRQRFDKAMKSIGLDTARSGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEAYAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPANGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++   +
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLKQPANSTVTAIEQAVEKAAV 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +      + + ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDIDLKRYFQNAVAVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|294651181|ref|ZP_06728513.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|292822934|gb|EFF81805.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 1077

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  ++  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|226951539|ref|ZP_03822003.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC
           27244]
 gi|226837731|gb|EEH70114.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. ATCC
           27244]
          Length = 1077

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQSRFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  ++  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|58337650|ref|YP_194235.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus NCFM]
 gi|75357469|sp|Q5FJC0|CARB_LACAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|58254967|gb|AAV43204.1| carbamoyl-phosphate synthase, large subunit (glutamine-hydrolyzing)
           [Lactobacillus acidophilus NCFM]
          Length = 1062

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    +P+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEEPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A                 P   +   +   +++
Sbjct: 637 QTSINLAAGLEAHGVKILGTTVKDVNRAEDRKLFDDIIKELKLNQPQGLTATTHEGVIEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++   + +   L           +L++ Y+DG E    
Sbjct: 697 AEKLGYPVLVRPSYVLGGKAMEIVYNKKELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     +I +++  +       + C
Sbjct: 757 AISDGYDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEIKEKITEVTKKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYQVVLVNSNPATIMTDTTIADKVYIEPLTVDSISRIIRQEYPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G              IL+ L I    + + +   + D+ + K +       VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELNIELLGTKLKSIEQAEDREQFKNLCKELGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEAAVEFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSFDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|225182118|ref|ZP_03735545.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225167181|gb|EEG76005.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1066

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                     + +  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPGMADATYIEPLNVKRLTEIIEKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +   Q ILE   +      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQSALNLSIELNKQGILEKYGVKVIGVQLDAIERGEDRIAFKESMNKLGIEMARSEP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++P       G  ++   + +     +  S +   Q+LIE+
Sbjct: 149 AYSVEEAVEIAKELGFPVVVRPAYTMGGAGGGLVYNVEELESIAARGISASMVGQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S           +       ++  +        I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDSKGQMITVCFIENVDP-VGVHTGDSFCTAPMLTISEEVQQRLQKH 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++   +A+G  G +   F  DP + ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 SYDIVEAVGVIGGTNVQFAHDPKTGRIVVIEINPR---TSRSS-ALASKATGFPIA-LIS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 42.6 bits (98), Expect = 0.074,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 29/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  +    KP        G   
Sbjct: 580 ALRDMGYETIIVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKEKPLGVIVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +   E + I  T    +  A   D+ R+     +  +P           ++    
Sbjct: 640 LNIAGELAEEGVRILGTSLDAIDLAEDRDRFRAVMEKLNIPMPEAGMASNLSEALEIAGK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  +  +   +  +        +L+++++           
Sbjct: 700 IGYPLMVRPSYVLGGRGMEVVHDEDMLRQYIQAAVDITPQRPILLDKFLA--NAIEAEAD 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             S           +   Y   +S  ++  + P  I     + +        Q +   G+
Sbjct: 758 AISNGKEVFVPAVMEHIEYAGIHSGDSACVIPPISIGEGHLETINEYTKKIAQELQVVGL 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +     +  V+ LE N +   T     P ++     S   L   +
Sbjct: 818 MNMQYAI--SNGNVYVLEANPRASRT----VPIVSKVCNISMARLATEI 860


>gi|254361688|ref|ZP_04977825.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia
           haemolytica PHL213]
 gi|261491742|ref|ZP_05988322.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261495508|ref|ZP_05991955.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|153093210|gb|EDN74221.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mannheimia
           haemolytica PHL213]
 gi|261308842|gb|EEY10098.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261312581|gb|EEY13704.1| carbamoyl phosphate synthase large subunit [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 1068

 Score = 70.7 bits (171), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWKTVEKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLSKNGVLKKYNVELIGATEDAIDKAEDRGRFKEAMTKIGLNTPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            + F         +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHSFEEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNRDEFIAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILE 73
           AL +AG++   +         D D S  L    L  +    ++     +G          
Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRVENPWGVIVHYGGQTP 641

Query: 74  LL----------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           L            I  T +  + +A   ++ +          P   +       +   + 
Sbjct: 642 LKLANALSDAGVNIIGTSADSIDAAEDRERFQQILNTLGLKQPANRTARNALEAVALANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNRYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +        S+ +      +   LD  ++       A   +G +G
Sbjct: 762 CDGENVLIGGIMQHVEQAGIHSGDSACSLPAYSLSGHVLDEIRKQTNAMAFA---LGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QNEVVYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 861


>gi|294634969|ref|ZP_06713486.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda
           ATCC 23685]
 gi|291091568|gb|EFE24129.1| carbamoyl-phosphate synthase, large subunit [Edwardsiella tarda
           ATCC 23685]
          Length = 1073

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  Q +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEALAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVEQPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQ 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I  E++R A      +  RG
Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLALELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|268317551|ref|YP_003291270.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus
           DSM 4252]
 gi|262335085|gb|ACY48882.1| carbamoyl-phosphate synthase, large subunit [Rhodothermus marinus
           DSM 4252]
          Length = 946

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A AL   G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGSQAARALRKEGYEVILVNSNPATIMTDPITADRVYLQELTPESIRRIVEKERPDAVLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       +   E + +      I A  ++ D+ + + ++   G+    S  
Sbjct: 89  TMGGQTALNLAAQLHEEGFWEAMGVEIIGVDIEAIQITEDRQKFRDLMEQIGIDQARSRT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   + L      P VI+P       G  ++   +     + +    +   Q+LIE
Sbjct: 149 ARSLLEAKEILQELGGLPVVIRPSFTLGGTGGGIVWTMEEFDRKVTRGLELSPVHQVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G +     +   + D   I  P  +     +      +             +    
Sbjct: 209 ESVYGWKEYELELLRDANDNVIIVCPIENLDPMGVHTGDSITVAPAQTLTDKQYQRMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +        G     F  +P + ++  +EIN  P M+  S     +   GY   ++ 
Sbjct: 269 AIKMMRSIGKFAGGCNVQFAVEPHTGRMIAVEIN--PRMSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 87/295 (29%), Gaps = 36/295 (12%)

Query: 20  KACASALEDAGFKVSQID-------VDRSVGLVL------------------AHLKPDLA 54
               +A ++ G++   I+        D  V   L                   H K    
Sbjct: 582 HGVLAA-KEMGYEAIMINCNPETVSTDFDVADKLYFEPVFWERVLDIIEHENRHGKLKGV 640

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
              L G        +     + I  T   ++  A    K  +         P   +    
Sbjct: 641 IVQLGGQTALKLARKLHEHGIPILGTSFPMMDLAEERSKFSALLRELEIPYPPYGAARTV 700

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD- 173
              ++    I  P +I+P       G+ +    + +   +         +++L++ +++ 
Sbjct: 701 AEAVEVAERIGYPILIRPSYVLGGQGMRIAINKEEVERYVRNILKLLPDNEILLDLFLEN 760

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           GIE+      D         +   +       +S  ++  + P  +  ++   ++R    
Sbjct: 761 GIEVDVDAACDGEEVWIAGIMQHIEPAG---VHSGDSTAVLPPFSLSEEVLNTIRRYTED 817

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             + +   G+     +       V+ +E N +   T     P +A   G    ++
Sbjct: 818 IARRLQVVGLINVQMVV--KDNVVYVIEANPRASRT----MPFVAKATGVPVAKI 866


>gi|327399335|ref|YP_004340204.1| carbamoyl-phosphate synthase large subunit [Hippea maritima DSM
           10411]
 gi|327181964|gb|AEA34145.1| carbamoyl-phosphate synthase, large subunit [Hippea maritima DSM
           10411]
          Length = 1068

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 91/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACKALKNEGYEIVLVNSNPATIMTDPMLADKTYIEPITVEFLEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +       L+   +    +       + D+   KQ ++  G+ V  S  
Sbjct: 89  TLGGQTALNAAMDLHKAGVLDRYGVELIGANAQTIERAEDRELFKQAMNEIGLKVPASGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +  + I  P +I+P       G  V    +     +      +  +++LIEQ
Sbjct: 149 AHSLSEAWEIVNAIHFPVIIRPSFTLGGTGAGVAYNKEEFEEVVKWGLEQSPVNEVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDKKDNVFIICSIENFDPMGIHTGDSITIAPAQTLTDKEYQILRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +   +E+N  P ++  S     +   G+   + 
Sbjct: 269 IDIIRKVGVETGGSNIQFAVNPENGEFVVIEMN--PRVSRSS--ALASKATGFPIAKF 322



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 99/286 (34%), Gaps = 24/286 (8%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S++ ++S           +   F+         V  ++ + KP+       G       +
Sbjct: 597 STDYDIS-----------DRLYFEPLVF---EDVMNIIENEKPEGVIVQFGGQTPLKLSL 642

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
                 ++I  T    +  A   +  R          P           ++    +  P 
Sbjct: 643 PLKNAGVKILGTDPKSIDIAEDRELFRELIKKLDLLQPESGIAHSKEEAIEVATRVGYPV 702

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASL 187
           +++P        +++I  ++ +   + ++        LL++++  D IE+    + D   
Sbjct: 703 LVRPSYVLGGRAMMIIFNEEQLRQYVDEAVQVTGERPLLVDKFLEDAIEVDVDAVSDGED 762

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
            V    +   +       +S  ++  + P  +  +I  E++R   L  + +  +G+    
Sbjct: 763 TVVAAVMEHIEAAG---VHSGDSACSIPPRTLKKEIVSEIKRQTRLLAKELNVKGLINIQ 819

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F     + +++ LE+N +   T     P ++   G  + ++   ++
Sbjct: 820 FAV--KNDRIYILEVNPRASRT----VPFVSKATGVHWAKIATQLI 859


>gi|303242221|ref|ZP_07328709.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302590209|gb|EFL59969.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 1074

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 106/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYQVILVNSNPATIMTDPGMADATYIEPLNVPRLTEIIDKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+  ++      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAKAGVLDKYDVKVIGVQLDAIERGEDRIAFKETMKRLGIEMPQSEP 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P VI+P       G  ++   + + +   +  S +   Q+L+E+
Sbjct: 149 AYTVEEAKEIAKKLGFPVVIRPAYTMGGTGGGLVYNMEELEVVAGRGISASMVGQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S +         +     +       +  +   I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDPMGVHTGDSFCSAPM-LTISTELQQRLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322

Query: 291 WMV 293
            ++
Sbjct: 323 SLL 325



 Score = 39.9 bits (91), Expect = 0.50,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP        G    +   + +   +++  T +  + 
Sbjct: 606 DKLYFEPLTV---EDVLSIYEKEKPLGIIVQFGGQTPLNIASELVRAGVKVLGTTTDAID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ R         +P           +   + I  P +++P       G+ VI  
Sbjct: 663 LAEDRDRFRIMMEKLEIPMPESGMASNMEQAVKIANRIGYPLMVRPSYVLGGRGMEVIHD 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  +        +LI++++D          DA  D  ++ VP    +      
Sbjct: 723 EEMLKQYVEAAVDVTPERPILIDKFLDN---AVEAEADAISDGKDVFVPAVMEHIELAGI 779

Query: 207 SSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  V+P     + +   +++      + +   G+    +     + KV+ LE N +
Sbjct: 780 HSGDSACVIPTISIPEKHLVTIRKYTEQIAKELNVIGLMNMQYAI--ANDKVYVLEANPR 837

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++         +   +
Sbjct: 838 ASRT----VPLVSKVCNIKMAHIATEL 860


>gi|261326861|emb|CBH09834.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 771

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 27  EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   +  +++     D  R V  ++     D+ FN+  G   E      +LE LE     
Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDGGKDEKRAGIDVLEALEEHNAA 302

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138
                S          +V+ +      P+ ++   T         +  P ++K L G +S
Sbjct: 303 FTGTDSRSFEPSKIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLSGYAS 362

Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +GI    +  ++    +   +     +  L+E+++ G E T     D+            
Sbjct: 363 VGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKVFRPL 422

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA-----------IGCRGISRS 246
            F   + +            +   +    +        +            +   G  R 
Sbjct: 423 MFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVGYGRV 482

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF  DP    V++LEIN   GM   S         G  F +L+
Sbjct: 483 DFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLM 517


>gi|72386711|ref|XP_843780.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|62359829|gb|AAX80258.1| hypothetical protein, conserved [Trypanosoma brucei]
 gi|70800312|gb|AAZ10221.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 771

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 90/283 (31%), Gaps = 28/283 (9%)

Query: 27  EDAGFKVSQI-----DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   +  +++     D  R V  ++     D+ FN+  G   E      +LE LE     
Sbjct: 243 DKNRYSFTEVAVRKDDAYRQVRELVTSNNFDVFFNLCDGGKDEKRAGIDVLEALEEHNAA 302

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138
                S          +V+ +      P+ ++   T         +  P ++K L G +S
Sbjct: 303 FTGTDSRSFEPSKIDMKVLVAGAGVNTPNFVLLDKTEGLAKKCRHLRFPVIVKHLSGYAS 362

Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +GI    +  ++    +   +     +  L+E+++ G E T     D+            
Sbjct: 363 VGINKDNRCDTLDELKVKVGTFLKEFNHALVEEFIRGREGTVLACADSGSPHGVKVFRPL 422

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA-----------IGCRGISRS 246
            F   + +            +   +    +        +            +   G  R 
Sbjct: 423 MFNFLQNEDDFAYFDKKWSMECNDEACSFLPHNDPAYPRIIDMARNAFQHIMNGVGYGRV 482

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           DF  DP    V++LEIN   GM   S         G  F +L+
Sbjct: 483 DFRIDPK-GDVYFLEINPNCGM-WYS------EKDGGDFADLM 517


>gi|312884384|ref|ZP_07744090.1| carbamoyl phosphate synthase large subunit [Vibrio caribbenthicus
           ATCC BAA-2122]
 gi|309367967|gb|EFP95513.1| carbamoyl phosphate synthase large subunit [Vibrio caribbenthicus
           ATCC BAA-2122]
          Length = 1074

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 83/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          +         +E+    +  +  A    +            P   +
Sbjct: 89  TMGGQTALNCALDLEKYGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.045,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEQPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      +D    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTTMEQAIDKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMRGQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|253988043|ref|YP_003039399.1| carbamoyl phosphate synthase large subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253779493|emb|CAQ82654.1| carbamoyl-phosphate synthase large chain [Photorhabdus asymbiotica]
          Length = 1074

 Score = 70.7 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L+   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELECQGVLKEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAEKVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 96/289 (33%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +  +  + I  T    +  A   ++ +          P   ++      ++  ++
Sbjct: 648 LKLARELEIAGVPIIGTSPDAIDRAEDRERFKQAVNRLGLKQPANATVTTIDRAVEKGNV 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +G RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNDEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867


>gi|261856156|ref|YP_003263439.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus
           neapolitanus c2]
 gi|261836625|gb|ACX96392.1| carbamoyl-phosphate synthase, large subunit [Halothiobacillus
           neapolitanus c2]
          Length = 1077

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 104/318 (32%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILINSNPATIMTDPGMADATYVEPINWETVAAIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE        +   A  ++ D+ R ++ ++  G+    S++
Sbjct: 89  TMGGQTALNCALDLARNGVLEKFNCELIGASEDAIDMAEDRERFREAMADIGLSTPSSVV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+      D+   +  P +I+P       G  +    +     + +    +   +LLIEQ
Sbjct: 149 VHSLEEAFDALSDLGFPVIIRPSFTMGGSGGGIAYNREEYEEIVRRGLDLSPTSELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P +  +  +E+N  P ++  S        FP     A  
Sbjct: 269 LAVLRKIGVETGGSNVQFAVNPENGAMIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWMVEDAS 297
             GY+  EL   + + A+
Sbjct: 327 AVGYTLDELRNEITQGAT 344



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +           D+             V  ++   KP        G   
Sbjct: 589 ALREDGFETIMVNCNPETVSTDYDISDRLYFESLTLEDVLEIIDVEKPKGVIVQFGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I  T    +  A   ++ ++         P   +       ++    
Sbjct: 649 LKLARDLEKAGAPIIGTTPDAIDRAEDRERFQAMISELGLKQPPNRTARSTDEAINLAAQ 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  ++ +   +  +   ++   +L+++++D   E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHNEEGLKRYMRDAVKASNDSPVLLDRFLDDATEMDIDAV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   +  EV+       +A+   G
Sbjct: 769 CDGETVVIGGLMEHIEMAG---VHSGDSACSLPPYTVAAPVLAEVRAQVTAMAKALNVVG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  +         ++F +E+N +   T     P ++   G    ++   
Sbjct: 826 LMNTQ--VAIQGNEIFIIEVNPRASRT----VPFVSKAVGIPLAKIAAR 868


>gi|168015903|ref|XP_001760489.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162688186|gb|EDQ74564.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1117

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                     V  VL   +PD    
Sbjct: 48  SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 107

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+   KQ ++  GV   PS +
Sbjct: 108 TMGGQTALNLACALAESGVLDKYNVELIGAKLDAIQKAEDRDLFKQAMAKIGVKTPPSGI 167

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         + +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 168 AHTLDECFVIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFEAICKAGLNASINSQVLVE 227

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +  S  +      +          +  +   +
Sbjct: 228 KSLLGWKEYELEVMRDLADNVVIICSIENIDSMGVHTGDSITVAPAQTLTDKEYQRLRDQ 287

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 288 SVAIIREIGVECGGSNVQFAVNPKDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 343

Query: 290 LWM 292
             +
Sbjct: 344 AKL 346


>gi|13507078|gb|AAK28428.1|AF251259_1 D-alanine-D-X ligase VanD4 [Enterococcus faecium]
          Length = 210

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 10/213 (4%)

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
           EDG +Q +LEL  IPY    I +S + MDK  +  VV + G+ V    ++ +        
Sbjct: 1   EDGCIQGLLELSGIPYVGCDIQSSVICMDKSLAYMVVKNAGIEVPGFRVLQKGDSLEAET 60

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +S P  +KP + GSS G+  + + + +   + ++    +  ++L+E+ V G E+ C ++G
Sbjct: 61  LSYPVFVKPARSGSSFGVNKVCRAEELQAAVTEAG--KYDSKILVEEAVSGSEVGCAILG 118

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIYKEVQRLAFLAHQ 236
           + +  +T         + +   +               +PA +P ++ +++Q  A   ++
Sbjct: 119 NGNDLITGEVDQIELKHGFFKIHQEAQPEKGSENAVIRVPAALPDEVREQIQETAKKIYR 178

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +GCRG++R D         +   E+N  PG T
Sbjct: 179 VLGCRGLARIDLFLRE-DGSIVLNEVNTMPGFT 210


>gi|298530534|ref|ZP_07017936.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira
           thiodismutans ASO3-1]
 gi|298509908|gb|EFI33812.1| carbamoyl-phosphate synthase, large subunit [Desulfonatronospira
           thiodismutans ASO3-1]
          Length = 1079

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D             +V  ++A  KPD    
Sbjct: 29  SGTQALKALKEEGYQVVLVNSNPATIMTDPDLADQTYIEPIEPDTVARIIAREKPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +         +LE   +    + +     +  + + ++ + + G+ V  S  
Sbjct: 89  TLGGQTGLNTAVALSENGVLEKYGVELIGASLPVIQKAESREQFRRAMENIGLKVPKSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I+ P +I+P       G  +    + +        S +   ++++E+
Sbjct: 149 ARNMDEARQWTSTIAFPIIIRPAYTLGGTGGGIAYNLEDLEEKAAYGLSCSMTHEIMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDKNDNCVIICSIENLDPMGVHTGDSITVAPSQTLTDREYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P    +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LDIMREIGVETGGSNVQFAVNPDDGDLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 81/253 (32%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KP+       G    +  V  +   + I  T    +  A   ++ ++   
Sbjct: 628 EDVMNIIEFEKPEGVIVQFGGQTPLNLAVPLLQAGVPIIGTSPDSIDRAEDRERFQALIA 687

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   +             I  P V++P        + ++  ++ +         
Sbjct: 688 KLGLMQPANGTARSIEEARIIAADIGYPVVVRPSYVLGGRAMEIVYDEEHLITYFKNHVV 747

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                 +L++++++G IE+    + D         +   +       +S  ++  + P  
Sbjct: 748 VAPEHPILLDKFLEGAIEVDVDALSDGQDTYVAGIMEHIEEAG---VHSGDSACVIPPHT 804

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  D+ +E++       + +   G+    F       +V+ LE+N +   T     P ++
Sbjct: 805 IEQDLLREIEAETISLARELSVVGLINIQFAI--KEGRVYILEVNPRASRT----VPFVS 858

Query: 279 AYAGYSFRELLLW 291
                   +L   
Sbjct: 859 KATSVPLAKLATR 871


>gi|312978335|ref|ZP_07790078.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus CTV-05]
 gi|310894854|gb|EFQ43925.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus CTV-05]
          Length = 1062

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKGELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|295693231|ref|YP_003601841.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus ST1]
 gi|295031337|emb|CBL50816.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus ST1]
          Length = 1062

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|262046684|ref|ZP_06019645.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus MV-3A-US]
 gi|260573133|gb|EEX29692.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus MV-3A-US]
          Length = 1062

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|256843498|ref|ZP_05548986.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|293380106|ref|ZP_06626195.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 214-1]
 gi|256614918|gb|EEU20119.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 125-2-CHN]
 gi|290923319|gb|EFE00233.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           crispatus 214-1]
          Length = 1062

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|227878920|ref|ZP_03996823.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           crispatus JV-V01]
 gi|256849742|ref|ZP_05555173.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus
           MV-1A-US]
 gi|227861466|gb|EEJ69082.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           crispatus JV-V01]
 gi|256713231|gb|EEU28221.1| carbamoyl-phosphate synthase large subunit [Lactobacillus crispatus
           MV-1A-US]
          Length = 1062

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAHGLEEHGVKILGTKVADVNRAEDRELFDQIIKQLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AISDGKEVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLQSIEQAEDREKFKELCKSLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALALGDEIGYPIIVRPAFTMGGTGGGICNNHEELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|71082750|ref|YP_265469.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1062]
 gi|71061863|gb|AAZ20866.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1062]
          Length = 1074

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 100/302 (33%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G+KV  I+ +                       +  +L   KPD    
Sbjct: 29  SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  ++A     L+  +I    +   A + + D+ + ++ +   G+ +  S  
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R    +   I  P +I+P      LG  + K ++     +      +  +Q+LIE+
Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVNQILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   I     +     +      +          +        
Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 35/293 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------------H 59
           AL+D+GF+   I         D D S  L    LK +  +N++                 
Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNIIKKEQQKGNLVGIIAQFG 646

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G              L I  T    +  A   D+ R                   +  + 
Sbjct: 647 GQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAIQ 706

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178
               I  P +++P        + ++ +   +   + ++      + +LI++++   +E+ 
Sbjct: 707 IAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEDNPILIDKFISHAMEVD 766

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  I   +  E++        A+
Sbjct: 767 VDAISDGKQVFVAGIMQHIEEAGIHSG---DSACCLPPVSIKPKLISEIEIQTKKLALAL 823

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +G     F     + +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 NVKGFMNIQFAI--KNDEIYVIEVNPRASRT----VPFVSKAKGLPLAKIASR 870


>gi|161504813|ref|YP_001571925.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|160866160|gb|ABX22783.1| hypothetical protein SARI_02937 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
          Length = 1074

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L+   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLKAFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEDAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|2231989|gb|AAB62176.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231991|gb|AAB62177.1| vancomycin resistance protein B [Enterococcus faecium]
 gi|2231993|gb|AAB62178.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 267

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 61/269 (22%), Positives = 105/269 (39%), Gaps = 43/269 (15%)

Query: 30  GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55
            F    I + ++    L                                     + D+AF
Sbjct: 1   KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAF 60

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    ++++
Sbjct: 61  PVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQIIDK 120

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G 
Sbjct: 121 GDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKILIEQAISGC 178

Query: 176 ELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ C VMG+    +                    E +  S N+   +PA IP++    VQ
Sbjct: 179 EVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVEERNRVQ 238

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
             A   ++ +GCRG++R D         V
Sbjct: 239 ETAKKVYRVLGCRGLARVDLFLQEDGGIV 267


>gi|290474746|ref|YP_003467626.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii
           SS-2004]
 gi|289174059|emb|CBJ80846.1| carbamoyl phosphate synthase, large subunit [Xenorhabdus bovienii
           SS-2004]
          Length = 1074

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLTEFSVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPTGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++  + 
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIEQAVEKGNG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867


>gi|325681229|ref|ZP_08160759.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8]
 gi|324107151|gb|EGC01437.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 8]
          Length = 1074

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 40/306 (13%), Positives = 93/306 (30%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIDKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKYGVQVIGVQVDAIERGEDRIEFKNAMKELGIGMPKSQV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYSVDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E            +               +            +P  +  ++ +  
Sbjct: 209 CIFGWEELELEVVRDAKNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
              ++   ++I   G     F  +P   ++  +EIN +   T  S     +   G+    
Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPEDGRIVVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSAML 325



 Score = 43.7 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 90/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 582 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   D  R+        +P     +     +   + 
Sbjct: 642 LNLANDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPEAGMAVNVDEALAIANK 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  D+ + + +  +        +LI+++++          
Sbjct: 702 IGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFLN---HATECEA 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D     VP    +       S +S  +LP+K    +I   ++         +  +G
Sbjct: 759 DAISDGEHCFVPAVMEHIELAGVHSGDSACILPSKNLSPEIVATIKEYTKKIAVEMNVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +        V+ LE N +   T     P ++     +  ++   ++
Sbjct: 819 LMNMQYAI--EGDTVYVLEANPRASRT----VPLVSKVCSINMVKIATEII 863


>gi|254448823|ref|ZP_05062279.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           HTCC5015]
 gi|198261513|gb|EDY85802.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           HTCC5015]
          Length = 1076

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     R++  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWRNIEQIIAEERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    +   A   + D+ + +  +   G+    + +
Sbjct: 89  TMGGQTALNTALDLDKHGVLEKYGVEMIGASKEAIDTAEDRDKFRIAMDEIGLDSTRAFM 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   I  P +I+P       G  +    Q     +      +   ++ +E+
Sbjct: 149 AKTMEDAEKALAEIGFPIIIRPSFTMGGSGGGIAYNKQEFAEIVRNGLELSPVTEIQLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVVRDRADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLRRIGVETGGSNVQFAVNPEDGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/321 (11%), Positives = 99/321 (30%), Gaps = 44/321 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A A+ + G++   +         D D   
Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAAFAMREDGYETIMVNCNPETVSTDYDTSD 615

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP+       G              + I  T    +  A  
Sbjct: 616 RLFFEPLTLEDVLEIIELEKPEGVIVQYGGQTPLKLARDLEAAGVPIIGTTPDSIDLAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ ++         P   +       +D    I  P V++P        + ++   + +
Sbjct: 676 RERFQAMLNKLGLKQPPNRTARNPDEAVDLADEIGYPLVVRPSYVLGGRAMEIVSDREDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++ S ++   +L++++++   +   V      +   +     +       +S  +
Sbjct: 736 NRYMTEAVSVSNDSPVLLDRFLN-DAIEVDVDAICDAEGNVLIGGVMEHIEEAGVHSGDS 794

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P  +      E+++      + +   G+  + F        ++ LE+N +   T 
Sbjct: 795 ACSLPPYTLDQKTQDELRQQVADMARELNVVGLMNTQFAI--QGDNIYVLEVNPRASRT- 851

Query: 271 VSIFPEMAAYAGYSFRELLLW 291
               P ++   G    ++   
Sbjct: 852 ---VPFVSKACGQPLAKIAAR 869


>gi|225850411|ref|YP_002730645.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Persephonella marina EX-H1]
 gi|225645104|gb|ACO03290.1| carbamoyl-phosphate synthase large chain, N- section
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Persephonella marina EX-H1]
          Length = 561

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++                     +   +  ++   +PD    
Sbjct: 29  SGTQGAKALKEEGYEVILVNSNPATIMTDPEVADKTYIEPLITPVIEKIIERERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + IL+   +    +   A   + D+   K+ +   G+ +  S  
Sbjct: 89  TLGGQTALNLAVDLYEKGILDKYNVKMIGANYEAIKKAEDRELFKEAMEKIGLEMPKSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +I+P       G  +          +      +   ++L+E+
Sbjct: 149 VKSLAEAEEIIDWIGFPVIIRPSFTLGGTGGSIAYNRDEFYYKVKAGLDASPVHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFEMEVMRDKNDNCVIICSIENLDPMGIHTGDSITIAPAMTLTDKEYQMLRDYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + + + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREIGVETGGSNVQFSQNPETGQFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|317163468|gb|ADV07009.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 1071

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGMLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 60/169 (35%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+  
Sbjct: 699 AEEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +           +   + P  +  +I  E++R       A+G
Sbjct: 759 DCVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G+    F        VF LE+N +   T     P ++   G    ++
Sbjct: 816 VVGLMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|222154052|gb|ACM47216.1| plastid carbamoylphosphate synthetase large subunit [Medicago
           truncatula]
          Length = 1167

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  VL   +PD    
Sbjct: 104 SGTQACKALREEGYEVILINSNPATIMTDPETADRTYITPMTPELVEQVLESERPDALLP 163

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ + + G+   PS  
Sbjct: 164 TMGGQTALNLAVALAESGALEKYGVELIGAKLEAIKKAEDRELFKQAMKNIGIKTPPSGT 223

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     M   + I  P +++P       G  +    + +        + +  +Q+LIE+
Sbjct: 224 CSTLEECMQIANQIEFPLIVRPAFTLGGTGGGIAYNREDLMEICKAGIAASLTNQVLIEK 283

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 284 SLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYS 343

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 344 IAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMAA 399

Query: 291 WM 292
            +
Sbjct: 400 KL 401


>gi|289808020|ref|ZP_06538649.1| D-alanine--D-alanine ligase [Salmonella enterica subsp. enterica
          serovar Typhi str. AG3]
          Length = 54

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAH 48
          +AVL+GG S+ER+VSL+SG A  + L + G     +D        L  
Sbjct: 5  IAVLLGGTSAERDVSLNSGAAVLAGLREGGIDAHPVDPQEVDVAQLKA 52


>gi|325206768|gb|ADZ02221.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M04-240196]
          Length = 1071

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|261393196|emb|CAX50815.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Neisseria meningitidis 8013]
          Length = 1071

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|254672417|emb|CBA05752.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha275]
          Length = 1071

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|325127537|gb|EGC50462.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           N1568]
          Length = 1071

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNSS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|283835095|ref|ZP_06354836.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae
           ATCC 29220]
 gi|291069392|gb|EFE07501.1| carbamoyl-phosphate synthase, large subunit [Citrobacter youngae
           ATCC 29220]
          Length = 1074

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|297568880|ref|YP_003690224.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio
           alkaliphilus AHT2]
 gi|296924795|gb|ADH85605.1| carbamoyl-phosphate synthase, large subunit [Desulfurivibrio
           alkaliphilus AHT2]
          Length = 1073

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                       V  V+   +PD    
Sbjct: 29  SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +       +       +E+      ++  A   D  R         VP    
Sbjct: 89  TLGGQTGLNTAIRVAEMGVLEKYGVELLAARIDVIRKAEGRDSFREAMRKIGLKVPESVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I        +   I  P +++P       G  +    Q +          +   ++++E+
Sbjct: 149 IHTIAEAKTAAVEIGFPVIVRPSFTLGGTGGGIAYNQQELEDICEHGLDLSINSEVMLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYELEVMRDKNDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQLMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   +         D D              V  ++   KP+       G   
Sbjct: 588 ALRELGVESIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNIIEKEKPEGVIVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      + I  T    +  A   ++ +      +   P           +     
Sbjct: 648 LNLAVPLAKAGVPIIGTSPDSIDRAEDRERFQQFLQKLNLRQPANGLARQAEEAIKVARD 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++  ++ +   +  +   +    +LI+++  D IE+    +
Sbjct: 708 IGYPVVVRPSYVLGGRAMRIVYNERELNNYIATAVDVSPEHPILIDKFLKDAIEVDVDAV 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  +  ++ +E++  +      +  +G
Sbjct: 768 SDGETTIIGGIMQHIEEAGIHSG---DSACVMPPHTLAPEMLEEIKTASKAMAAELKVKG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        +F LE+N +   T     P ++   G    +L   
Sbjct: 825 LMNVQFAV--KDNTLFVLEVNPRASRT----VPFVSKATGVPLAKLATK 867


>gi|238911126|ref|ZP_04654963.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|224581907|ref|YP_002635705.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|224466434|gb|ACN44264.1| carbamoyl-phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|200388769|ref|ZP_03215381.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|199605867|gb|EDZ04412.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|168243534|ref|ZP_02668466.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194447884|ref|YP_002044034.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194406188|gb|ACF66407.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|205337398|gb|EDZ24162.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|204927019|ref|ZP_03218221.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204323684|gb|EDZ08879.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|168820960|ref|ZP_02832960.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|197250511|ref|YP_002145050.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197214214|gb|ACH51611.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|205342414|gb|EDZ29178.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320084305|emb|CBY94098.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|168230330|ref|ZP_02655388.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194472177|ref|ZP_03078161.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194458541|gb|EDX47380.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|205334983|gb|EDZ21747.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|198241932|ref|YP_002214022.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|197936448|gb|ACH73781.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|326621766|gb|EGE28111.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|167550756|ref|ZP_02344513.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205324441|gb|EDZ12280.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|161612394|ref|YP_001586359.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|168234815|ref|ZP_02659873.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168262261|ref|ZP_02684234.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168464396|ref|ZP_02698299.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194735374|ref|YP_002113082.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|205351409|ref|YP_002225210.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|207855581|ref|YP_002242232.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|161361758|gb|ABX65526.1| hypothetical protein SPAB_00083 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194710876|gb|ACF90097.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195632923|gb|EDX51377.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197291819|gb|EDY31169.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|205271190|emb|CAR35977.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205348866|gb|EDZ35497.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206707384|emb|CAR31657.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|322615889|gb|EFY12806.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322620674|gb|EFY17534.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322623975|gb|EFY20812.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322627423|gb|EFY24214.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322630730|gb|EFY27494.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322638050|gb|EFY34751.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640534|gb|EFY37185.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322647674|gb|EFY44159.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322648381|gb|EFY44836.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322656942|gb|EFY53228.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322657347|gb|EFY53619.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 19N]
 gi|322663667|gb|EFY59867.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322666500|gb|EFY62678.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672341|gb|EFY68453.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322676347|gb|EFY72418.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 366867]
 gi|322679560|gb|EFY75605.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686111|gb|EFY82095.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323194955|gb|EFZ80141.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323200136|gb|EFZ85223.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323201043|gb|EFZ86112.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323209440|gb|EFZ94373.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323212308|gb|EFZ97132.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556152]
 gi|323216613|gb|EGA01339.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219343|gb|EGA03829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323225759|gb|EGA09979.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323228700|gb|EGA12829.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323236686|gb|EGA20762.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323239813|gb|EGA23860.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323242139|gb|EGA26168.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323249436|gb|EGA33352.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323252229|gb|EGA36080.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323256680|gb|EGA40410.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323261286|gb|EGA44873.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323265534|gb|EGA49030.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323271678|gb|EGA55096.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
 gi|326626431|gb|EGE32774.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|62178631|ref|YP_215048.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|62126264|gb|AAX63967.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|322713083|gb|EFZ04654.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLCRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|56412339|ref|YP_149414.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197361276|ref|YP_002140911.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|56126596|gb|AAV76102.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197092751|emb|CAR58175.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|16763457|ref|NP_459072.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167989925|ref|ZP_02571025.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|197262871|ref|ZP_03162945.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|20143903|sp|P14846|CARB_SALTY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|16418563|gb|AAL19031.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|197241126|gb|EDY23746.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205331328|gb|EDZ18092.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|261245300|emb|CBG23086.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267991730|gb|ACY86615.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301156698|emb|CBW16169.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312911037|dbj|BAJ35011.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321222364|gb|EFX47436.1| Carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323128385|gb|ADX15815.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332987019|gb|AEF06002.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|16759060|ref|NP_454677.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29140610|ref|NP_803952.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|213163014|ref|ZP_03348724.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|289826208|ref|ZP_06545320.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|22095513|sp|Q8Z9L7|CARB_SALTI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|25293883|pir||AE0510 carbamoyl-phosphate synthase large chain [imported] - Salmonella
           enterica subsp. enterica serovar Typhi (strain CT18)
 gi|16501350|emb|CAD01221.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29136234|gb|AAO67801.1| carbamoyl-phosphate synthase large chain [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
          Length = 1075

 Score = 70.3 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|320647436|gb|EFX16231.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320652770|gb|EFX21008.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H- str. H 2687]
          Length = 1073

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDVVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|311695968|gb|ADP98841.1| carbamoyl-phosphate synthase, large subunit [marine bacterium HP15]
          Length = 1072

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWKTVEKIIEKEQPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     ILE   +    +       + D+ R  + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLERHGILEKHGVEMIGANADTIDKAEDRDRFDKAMKKIGLECPRATI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHSMEEAWKVADDIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGMNPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/322 (11%), Positives = 102/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42
           + V+ GG +         G+          +AL   + G++   I         D D S 
Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    +  +    ++H            G              + I  T    +  A  
Sbjct: 615 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDRAED 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++  +   + +   I  P V++P        + ++  ++ +
Sbjct: 675 RERFQQMITRLGLKQPENATVRSHEEGILAAREIGYPLVVRPSYVLGGRAMEIVYDEEEL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L++ +++  IE+    + D    V    +   +       +S  
Sbjct: 735 VRYMRNAVLVSNDSPVLLDHFLNAAIEVDIDAISDGKDVVIGGIMQHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +   +  E++         +   G+      +     +++ +E+N +   T
Sbjct: 792 SACSLPPYTLSQQVQDEMRDAVKKMAIELDVVGLMNVQLAW--QDGEIYVIEVNPRASRT 849

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S  ++   
Sbjct: 850 ----VPFVSKAIGVSLAKVAAR 867


>gi|49183263|ref|YP_026515.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227812912|ref|YP_002812921.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
 gi|254686586|ref|ZP_05150445.1| putative D-ala D-ala ligase [Bacillus anthracis str. CNEVA-9066]
 gi|254734936|ref|ZP_05192648.1| putative D-ala D-ala ligase [Bacillus anthracis str. Western North
           America USA6153]
 gi|254739721|ref|ZP_05197414.1| putative D-ala D-ala ligase [Bacillus anthracis str. Kruger B]
 gi|254754908|ref|ZP_05206943.1| putative D-ala D-ala ligase [Bacillus anthracis str. Vollum]
 gi|254756951|ref|ZP_05208979.1| putative D-ala D-ala ligase [Bacillus anthracis str. Australia 94]
 gi|49177190|gb|AAT52566.1| D-alanine-D-alanine ligase, N-terminus [Bacillus anthracis str.
           Sterne]
 gi|227007613|gb|ACP17356.1| putative D-ala D-ala ligase [Bacillus anthracis str. CDC 684]
          Length = 158

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 38/137 (27%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 7   GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 66

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 67  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 126

Query: 84  ILASALSMDKMRSKQVV 100
           +LASA  MDK+  K + 
Sbjct: 127 VLASAAGMDKVVMKNIF 143


>gi|65317671|ref|ZP_00390630.1| COG1181: D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Bacillus anthracis str. A2012]
          Length = 161

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/137 (28%), Positives = 55/137 (40%), Gaps = 38/137 (27%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---------------- 45
            +L GG S+E +VSL +  A   AL    F++  I +      +                
Sbjct: 10  GLLYGGKSAEHQVSLQTALAAIKALNQDKFEIHPIYITEQGQWIRGERIEGEVANVEVLK 69

Query: 46  ----------------------LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
                                       D+ F +LHG  GEDG VQ +LEL+ IPY  +G
Sbjct: 70  MSGAENAISPLSLSTEIIPSANAEENAIDVIFPLLHGPNGEDGTVQGLLELMNIPYVGNG 129

Query: 84  ILASALSMDKMRSKQVV 100
           +LASA  MDK+  K + 
Sbjct: 130 VLASAAGMDKVVMKNIF 146


>gi|296109365|ref|YP_003616314.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus
           infernus ME]
 gi|295434179|gb|ADG13350.1| carbamoyl-phosphate synthase, large subunit [Methanocaldococcus
           infernus ME]
          Length = 1058

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 106/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              +  ++   +PD    
Sbjct: 29  SGSQACKALRKLGYEVVLVNSNPATIMTDTDMADRVYIEPLTSEVLEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V+     IL+  ++    + + A     D+   K+     GV V  S  
Sbjct: 89  TLGGQTALNLAVELAEKGILDKYDVELIGANLEAIKRGEDRELFKECCKKAGVEVLRSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P V++P       G  +    + +   + +   ++  +Q+LIE+
Sbjct: 149 VFSVDEALEFAEEIGYPIVVRPAFTLGGTGGGIAYNPEELKEIVSKGLEYSLKNQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +       ++  + T      +  + Y++++  
Sbjct: 209 SVLGWKEFEYEVIRDKNDNVIIICTIENMDPMG-VHTGDSITVAPAQTLSDEEYQKMRDY 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    +A+G   G S   F  +P   ++  +E+N  P ++  S     +   GY   ++ 
Sbjct: 268 SIKIIRAVGVETGGSNIQFALNPKDGRIVAIEMN--PRVSRSS--ALASKATGYPIAKVA 323

Query: 290 LWM 292
             +
Sbjct: 324 AQL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 99/290 (34%), Gaps = 38/290 (13%)

Query: 23  ASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGN 61
             A+++ G++   +         D D              V  ++ + KPD     + G 
Sbjct: 576 IKAVQEEGYEAIMVNCNPETVSTDYDTADKLYFDPLYWEDVLNIVENEKPDGVIVQVGGQ 635

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--D 119
                    + + LE     +   +  L+ D+ +  +++    +P  P+ +         
Sbjct: 636 T-----PLNLAKYLENYIIGTSKESIDLAEDREKFAKILEELNIPQPPNGIAYNEEEALK 690

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + ++  ++ +   + ++   +    +LI+++  D  E+ 
Sbjct: 691 IAKEIGYPVLVRPSYVLGGRAMRIVYNEEELKEYIKEAVEVSEEHPVLIDKFLEDATEVD 750

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  ++  + P  +  ++ + ++         +
Sbjct: 751 VDAICDGESVLIGGIMEHIEEAG---VHSGDSACVIPPQTLSKEVIEIIKDYTRKIALKL 807

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +G+    +       KV+ LE N +   T     P ++   G    ++
Sbjct: 808 NVKGLINIQYAI--KDDKVYVLEANPRASRT----VPFLSKAIGLPLAKI 851


>gi|152998030|ref|YP_001342865.1| carbamoyl-phosphate synthase large subunit [Marinomonas sp. MWYL1]
 gi|150838954|gb|ABR72930.1| carbamoyl-phosphate synthase, large subunit [Marinomonas sp. MWYL1]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGIRVILVNSNPATIMTDPVMADATYIEPVEWKTVEKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ R  + + + G+    +  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKYNVEMIGATADAIDKAEDRSRFDKAMRAIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEALKVQAEVGFPCIIRPSFTMGGTGGGIAYNMEEFDEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 89/294 (30%), Gaps = 31/294 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALGLREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRKEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G            E + I  T    +  A   ++ +S         P   ++       
Sbjct: 642 GGQTPLKIARALQNEGVPIIGTTPESIDRAEDRERFQSMIQRLGYKQPHNATVRSVDQAA 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
               LI  P V++P        + ++  ++ +   +  +   ++   +L++ +++     
Sbjct: 702 AKAALIGYPLVVRPSYVLGGRAMEIVYNEKELMRYMTSAVKVSNDSPVLLDHFLNAAIEI 761

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                     V    + +    +      S  S    P  +  ++  +++ +       +
Sbjct: 762 DIDCISDGHQVVIGGIMQHIEQAGVHSGDSACSLP--PYSLSKEVQDDIREMIKNMALEL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G  G+  +         +++ +E+N +   T     P ++   G S  ++   +
Sbjct: 820 GVVGLMNTQLAI--QDGEIYVIEVNPRASRT----VPFVSKCIGRSLAQVAALI 867


>gi|297617486|ref|YP_003702645.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145323|gb|ADI02080.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 1072

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  ++ +                     +S+  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPGIADTTYIEPLTVKSLAAIIAKERPDAVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G     +   Q +L+   +      + A     D+   K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLVSELHKQGVLDKYGVKVIGVQVDAIEKGEDRTVFKETMERLGIEMPRSQA 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P VI+P       G  ++   + +   + +  + +   Q+L+E+
Sbjct: 149 AYSVEEAEEIAKELGYPVVIRPAYTLGGTGGGLVYNLEELRTVVSRGLAASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +          +   I  ++ + +Q  
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSFCVAPM-LTISPELQERLQEY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A+   +AIG  G +   F  DP + +V  +EIN +   T  S     +   G+   
Sbjct: 268 AYRVVEAIGVIGGTNIQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 43.3 bits (100), Expect = 0.044,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 88/290 (30%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   +         D D              V  +    KP        G   
Sbjct: 580 ALKELGYETVMVNCNPETVSTDYDTSDKLYFEPVTVEDVLSIYEKEKPIGIIVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    +  A   D+ R         +P           ++    
Sbjct: 640 LNIAQELAAAGVRILGTTPDTIDLAEDRDRFRRMMESLGIPMPEAGMAANLEEALEVAAR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  ++ +   +  +        +LI++++           
Sbjct: 700 IGYPLMVRPSYVLGGRGMEIVYDEEMLRQYVTAAVGVTPERPILIDKFLSN---AVEAEA 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  +  +  VP    +       S +S  V+P     + +   ++       + +G  G
Sbjct: 757 DAIANGKDAFVPAVMEHIELAGIHSGDSACVIPPVTIPERHLATIEDYTKKIARELGVVG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       KV+ LE N +   T     P ++        ++   +
Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKVCNIPMAKIATEI 860


>gi|329120046|ref|ZP_08248716.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327463577|gb|EGF09895.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 1069

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|325143751|gb|EGC66068.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240013]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|325141608|gb|EGC64072.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           961-5945]
 gi|325197645|gb|ADY93101.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           G2136]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|325133501|gb|EGC56164.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M13399]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|325129512|gb|EGC52339.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           OX99.30304]
 gi|325135635|gb|EGC58252.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M0579]
 gi|325201504|gb|ADY96958.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240149]
 gi|325207484|gb|ADZ02936.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           NZ-05/33]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|319409827|emb|CBY90135.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Neisseria meningitidis WUE
           2594]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|319639060|ref|ZP_07993817.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102]
 gi|317399638|gb|EFV80302.1| carbamoyl-phosphate synthase large subunit [Neisseria mucosa C102]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|313669076|ref|YP_004049360.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica
           ST-640]
 gi|313006538|emb|CBN88002.1| carbamoyl phosphate synthase large subunit [Neisseria lactamica
           020-06]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|309379471|emb|CBX21837.1| unnamed protein product [Neisseria lactamica Y92-1009]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSTEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|308389954|gb|ADO32274.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           alpha710]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|298370199|ref|ZP_06981515.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral
           taxon 014 str. F0314]
 gi|298281659|gb|EFI23148.1| carbamoyl-phosphate synthase, large subunit [Neisseria sp. oral
           taxon 014 str. F0314]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|254671009|emb|CBA07784.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha153]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|254804321|ref|YP_003082542.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha14]
 gi|254667863|emb|CBA03922.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           alpha14]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEIDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|261379319|ref|ZP_05983892.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava
           NJ9703]
 gi|284797755|gb|EFC53102.1| carbamoyl-phosphate synthase, large subunit [Neisseria subflava
           NJ9703]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 99/294 (33%), Gaps = 36/294 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSTEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGQDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
           +    F        VF LE+N       P ++  +  P     A   AG S +E
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRTIPFVSKATGVPLAKVGARVMAGISLKE 870


>gi|261401908|ref|ZP_05988033.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica
           ATCC 23970]
 gi|269207923|gb|EEZ74378.1| carbamoyl-phosphate synthase, large subunit [Neisseria lactamica
           ATCC 23970]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVANGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|225076110|ref|ZP_03719309.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens
           NRL30031/H210]
 gi|224952554|gb|EEG33763.1| hypothetical protein NEIFLAOT_01142 [Neisseria flavescens
           NRL30031/H210]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|121634229|ref|YP_974474.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           FAM18]
 gi|161869361|ref|YP_001598528.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           053442]
 gi|120865935|emb|CAM09672.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           FAM18]
 gi|161594914|gb|ABX72574.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           053442]
 gi|325131499|gb|EGC54206.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M6190]
 gi|325137545|gb|EGC60127.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ES14902]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|218767563|ref|YP_002342075.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           Z2491]
 gi|22095531|sp|Q9JW02|CARB_NEIMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|121051571|emb|CAM07869.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           Z2491]
          Length = 1071

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|1750392|gb|AAB39256.1| carbamoylphosphate synthetase large subunit [Salmonella enterica
           subsp. enterica serovar Typhimurium]
          Length = 1075

 Score = 70.3 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAGDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|262371952|ref|ZP_06065231.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii
           SH205]
 gi|262311977|gb|EEY93062.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter junii
           SH205]
          Length = 1077

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         + A   L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDANGILEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPRADV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  ++  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSQEVQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|40253001|dbj|BAD05864.1| putative D-Ala-D-Ala ligase [Streptomyces garyphalus]
          Length = 81

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G    SR+DF  D    +   LE+N  PG+T  S+ P  A+ AG+++ +L   +V  A+
Sbjct: 22  FGPHTYSRADFRCDAA-GEPMCLEVNALPGLTATSLLPLGASGAGWTYADLAERIVSLAT 80


>gi|262044924|ref|ZP_06017966.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259037651|gb|EEW38880.1| carbamoyl-phosphate synthase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 1074

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLNLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|237729329|ref|ZP_04559810.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2]
 gi|226909058|gb|EEH94976.1| carbamoyl-phosphate synthase large subunit [Citrobacter sp. 30_2]
          Length = 1074

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|152968622|ref|YP_001333731.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238893017|ref|YP_002917751.1| carbamoyl phosphate synthase large subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|330009312|ref|ZP_08306503.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS
           92-3]
 gi|150953471|gb|ABR75501.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
 gi|238545333|dbj|BAH61684.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
 gi|238774020|dbj|BAH66517.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae
           NTUH-K2044]
 gi|238774052|dbj|BAH66548.1| carbamoyl-phosphate synthase large subunit [Klebsiella pneumoniae]
 gi|328534838|gb|EGF61382.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. MS
           92-3]
          Length = 1074

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|322492477|emb|CBZ27752.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 868

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 77/250 (30%), Gaps = 15/250 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            +ID  R+V  ++   K D+ FN+  G   E      ++E LE          S      
Sbjct: 353 KKIDSYRAVRKLVTSKKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 412

Query: 94  MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
               +++       VP    +  +         +  P ++K L G +S+GI    +  ++
Sbjct: 413 KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDNRCDTL 472

Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                         +  L+E+++ G E T     D              F   +      
Sbjct: 473 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 532

Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +     Y              +         +   G  R DF  D L+ + +
Sbjct: 533 YFEKKWTMECGDQAYGFLASSDPAYTAITEMARNAFKYIMNGVGYGRVDFRIDELTGEPY 592

Query: 259 WLEINVQPGM 268
           +LEIN   GM
Sbjct: 593 FLEINPNCGM 602


>gi|323497906|ref|ZP_08102915.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM
           21326]
 gi|323316951|gb|EGA69953.1| carbamoyl phosphate synthase large subunit [Vibrio sinaloensis DSM
           21326]
          Length = 1076

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIDQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|157147550|ref|YP_001454869.1| carbamoyl phosphate synthase large subunit [Citrobacter koseri ATCC
           BAA-895]
 gi|157084755|gb|ABV14433.1| hypothetical protein CKO_03350 [Citrobacter koseri ATCC BAA-895]
          Length = 1074

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGLPLAKVAAR 867


>gi|84393222|ref|ZP_00991984.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus
           12B01]
 gi|84376128|gb|EAP93014.1| carbamoyl-phosphate synthase large subunit [Vibrio splendidus
           12B01]
          Length = 1076

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 97/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AIEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIAGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----VPFVSKATG 857


>gi|313904758|ref|ZP_07838131.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
 gi|313470361|gb|EFR65690.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
          Length = 1077

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 47/310 (15%), Positives = 103/310 (33%), Gaps = 43/310 (13%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              D+          +  ++A  +PD    
Sbjct: 29  SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADITYIEPLNVNRLEEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K+ ++   + +  S  
Sbjct: 89  NLGGQSGLNLCSELYKAGVLDKYSVQVIGVQVDAIERGEDRIEFKETMNKLHIDMPRSHE 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +  +Q+LIE+
Sbjct: 149 AYSVEEAVKYADKLGYPVVVRPAYTMGGAGGGLVYNREELQTVASRGLQASLINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +     +         +       ++  +        I  ++  ++Q  
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVDP-VGVHTGDSFCVAPMLTISEELQAKLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS--------IFPEM---AA 279
           A+   + IG  G +   F  DP++ +V  +EIN +   T  S         FP     A 
Sbjct: 268 AYRIVEHIGVIGGTNVQFAHDPVTDRVVVIEINPR---TSRSSALASKATGFPIALVSAK 324

Query: 280 -YAGYSFREL 288
             +G +  +L
Sbjct: 325 LASGLTLADL 334



 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 98/296 (33%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL  +  GF+   +         D D              V  +    KP       
Sbjct: 577 VHAALSLKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQF 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +         ++I  T   ++  A   D  R+        +P     +     +
Sbjct: 637 GGQTPLNLAASLKKNGVKILGTTPEVIDLAEDRDHFRAMMDKLGIPMPEAGMAVSVEEAI 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++ H I  P +++P       G+ V+  D+S+   +  +        +LI+++++     
Sbjct: 697 ETAHKIGYPVMVRPSFVLGGRGMEVVYDDESMADYMKAAIGVTPDRPILIDRFLN---HA 753

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQA 237
                DA  D T   VP    +       S +S  ++P+K   +   + ++       + 
Sbjct: 754 MECEADAIADGTHAFVPAVMEHIELAGIHSGDSACIIPSKHIPEENLETIREYTRKIAEE 813

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +   G+    +     + KVF +E N +   T     P ++  AG     +   ++
Sbjct: 814 MHVVGLMNMQYAI--ENGKVFVIEANPRASRT----VPLVSKVAGIQMVPIATDII 863


>gi|325204812|gb|ADZ00266.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           M01-240355]
          Length = 1071

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVNTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|260773484|ref|ZP_05882400.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP
           69.14]
 gi|260612623|gb|EEX37826.1| carbamoyl-phosphate synthase large chain [Vibrio metschnikovii CIP
           69.14]
          Length = 1076

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALELEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLACPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYRVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLLQPENATVTTMEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|94266401|ref|ZP_01290098.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|94268346|ref|ZP_01291150.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|93451648|gb|EAT02437.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
 gi|93452996|gb|EAT03490.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [delta proteobacterium MLMS-1]
          Length = 1077

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                       V  V+   +PD    
Sbjct: 29  SGTQAVKALKEEGYQVVLINSNPATIMTDPEIADATYIEPITPEFVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +       +       +E+      ++  A   D  R         VP    
Sbjct: 89  TLGGQTGLNTAIQVAEMGILEEYGVELLAARIDVIRKAEGRDSFREAMRKIGIKVPQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I        +   I  P +++P       G  +    Q +    +     +   ++++E+
Sbjct: 149 IHTLSEAKAAAAEIGFPIIVRPSYTLGGTGGGIAYNQQELEKLCITGLDLSLNSEVMLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYELEVMRDNKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDREYQAMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/253 (11%), Positives = 80/253 (31%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   +P+       G    +  V      + I  T    +  A    + +    
Sbjct: 624 EDVLNIIEKEQPEGVIVQFGGQTPLNLAVPLARAGVPILGTTPDSIDRAEDRQRFQQFLQ 683

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   P           +     I  P V++P        + ++  ++ +   +  +  
Sbjct: 684 KLNLLQPANGLARSGDEALAVAKEIGYPVVVRPSYVLGGRAMRIVYNERDLNQYMTFAVE 743

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    +LI+++  D +E+    + D    +    +   +           ++  + P  
Sbjct: 744 ASPEHPVLIDKFLKDAVEVDVDAISDGDSAIIGGIMQHIEEAGIHSG---DSACVLPPHT 800

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   + +E++       + +  +G+    F      R +F LE+N +   T     P ++
Sbjct: 801 LEPAMIEEIKEATRAMAKELRVKGLMNVQFAV--QDRTLFVLEVNPRASRT----VPFVS 854

Query: 279 AYAGYSFRELLLW 291
              G    +L   
Sbjct: 855 KATGVPLAKLATR 867


>gi|77360172|ref|YP_339747.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas
           haloplanktis TAC125]
 gi|76875083|emb|CAI86304.1| carbamoyl phosphate synthase, large subunit [Pseudoalteromonas
           haloplanktis TAC125]
          Length = 1072

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVEKIIEKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        +     +L    +    +   A   + ++ R    + + G+    +  
Sbjct: 89  TMGGQTALNCALELDKHGVLAKHGVELIGATADAIDKAENRERFDTAMKNIGLECPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    I  P +I+P       G  V    +       +    +  ++LLI++
Sbjct: 149 AHSMDEARDIITRIGLPCIIRPSFTMGGTGGGVAYNLEEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPEDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPVGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +      +   P   ++      +     
Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLNLLQPENATVTSTEEAILKSVE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +   + ++   ++   +L+++++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYMTEAVQASNEAPVLLDRFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  ++   +++        +G  G
Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHTLSQEVQDVMRKQVTDMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F        V+ +E+N +   T     P ++   G +  ++   
Sbjct: 824 LMNTQFAV--KDGLVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866


>gi|86147368|ref|ZP_01065681.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222]
 gi|85834796|gb|EAQ52941.1| carbamoyl-phosphate synthase large subunit [Vibrio sp. MED222]
          Length = 1076

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G        D     +LE   +    +   A   + D+ R  + + + G+      +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVQEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIAGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857


>gi|163847334|ref|YP_001635378.1| carbamoyl-phosphate synthase large subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222525180|ref|YP_002569651.1| carbamoyl-phosphate synthase large subunit [Chloroflexus sp.
           Y-400-fl]
 gi|163668623|gb|ABY34989.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus
           aurantiacus J-10-fl]
 gi|222449059|gb|ACM53325.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus sp.
           Y-400-fl]
          Length = 1097

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         ILE   +    + + A  ++ D+ R K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVALHEAGILEKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +     P +I+P       G  +    +     + +    +   Q+L+E+
Sbjct: 149 ATTLEEALAIVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRTIVERGLDASPVSQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYQRMRDMG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F   P   +++ +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 93/297 (31%), Gaps = 34/297 (11%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L   G++   +         D D              V  V+   +PD       G    
Sbjct: 593 LRALGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNVVDVERPDGVIIQFGGQTPL 652

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T    +  A   D+  +     +   P   S       +     I
Sbjct: 653 KLARALEAVGVPIWGTAPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALTVARRI 712

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + ++  D ++   + ++ + +    +LI+++++       +  D
Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDDAALERYMREAVAASPEHPVLIDRFLED---AFEMDVD 769

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGI 243
           A  D   + +             S +S  V+P  +  + +            QA+G  G+
Sbjct: 770 AVCDGHTVVIAGIMEQIELAGVHSGDSACVIPTYMVAEEHVVTMRHYTERLAQALGVVGL 829

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +        V+ LE+N +   T     P +A   G  + +L    V+ A+  R
Sbjct: 830 MNIQYAM--KDGVVYVLEVNPRASRT----VPFVAKATGVPWVQLA---VQCAAGAR 877


>gi|283955248|ref|ZP_06372749.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793285|gb|EFC32053.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 1089

 Score = 69.9 bits (169), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLRDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +    +D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRMDNCIIVCSIENIDPMGIHTGDSITIAPALTLTDKEYQIMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 82/260 (31%), Gaps = 11/260 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD       G        +  +   +I  T + ++  A    
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSVFGTKIIGTSARVIDMAEDRK 677

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P   +       +     I  P +++P        + V+  +  + L
Sbjct: 678 KFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEVELRL 737

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            + ++   +    +LI+Q++D   E+    + D         +   +           ++
Sbjct: 738 YMQEAVDASDKSPILIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---DSA 794

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  I   + + + +        +G  G+    F     + +++ +E+N +   T  
Sbjct: 795 CSLPPCNIDEKMQEIITQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT-- 850

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 851 --VPFVSKATGIPLAKVATR 868


>gi|302879461|ref|YP_003848025.1| carbamoyl-phosphate synthase, large subunit [Gallionella
           capsiferriformans ES-2]
 gi|302582250|gb|ADL56261.1| carbamoyl-phosphate synthase, large subunit [Gallionella
           capsiferriformans ES-2]
          Length = 1075

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D +            V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPITWQIVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A  ++ D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAHHGVLEKYNVEMIGASREAIDMAEDREKFKQAMTRIGLASARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q ++  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQQVMGFPTVIRPSFTMGGSGGGIAYNREEFLEICERGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHTGDSITVAPALTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFSINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 88/298 (29%), Gaps = 37/298 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+A  KP       
Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPVGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T   ++  A   ++ +   +      P   +       +
Sbjct: 637 GGQTPLSLARGLEKNGVPIIGTTPDMIDCAEDRERFKQMLMALELKQPPNRTASTVAEGL 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-----QYVD 173
                I  P V++P        + +I +   +   +  +   +      +         D
Sbjct: 697 AGAAAIGYPLVMRPSNVLGGRAMEIIHEQVDLERYMRDAEIMSKTYPERLPILLDRFLND 756

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D    +    +   +       +S  ++  + P  +P+ +  E++R    
Sbjct: 757 AIEVDVDAVSDGVDVIIGGIMEHIEEAG---VHSGDSACSLPPFSLPVAMQNELRRQTVA 813

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +A+   G+    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 814 MARALNVVGLMNVQFAI--QGETVYVLEVNPRASRT----VPFVSKATGVPLAKIAAR 865


>gi|329910106|ref|ZP_08275232.1| Carbamoyl-phosphate synthase large chain [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546259|gb|EGF31290.1| Carbamoyl-phosphate synthase large chain [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 1076

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADVTYIEPITWQVVESIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L         +   A  ++ D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHHNGVLTKYNCELIGASPEAIDMAEDRSKFKEAMTRIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTLDEAWTVQKTLGFPIVIRPSFTMGGSGGGIAYNSEEFETICKRGLEASPTTELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +    +D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDKMDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 92/300 (30%), Gaps = 37/300 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPYGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++            P   +       +
Sbjct: 637 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFSQLLKDLGLRQPPNRTARTEADAL 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE+
Sbjct: 697 LLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +       +   +       +S  ++  + P  +      E++R   L  + 
Sbjct: 757 DVDCLSDGTRTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQPTIDEIKRQTSLMAKG 813

Query: 238 IGCRGISRSDFLFDPL------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F              VF LE+N +   T     P ++   G    ++   
Sbjct: 814 LNVVGLMNVQFAIQQQVIDGVSQDVVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 869


>gi|242238045|ref|YP_002986226.1| carbamoyl phosphate synthase large subunit [Dickeya dadantii
           Ech703]
 gi|242130102|gb|ACS84404.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii
           Ech703]
          Length = 1074

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                Q     + +  T    +  A   ++ +      S   P   ++      ++    
Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLSLKQPANATVSTIDQAVEKAAA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELSVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|307132640|ref|YP_003884656.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937]
 gi|306530169|gb|ADN00100.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii 3937]
          Length = 1074

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                Q     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     DI   ++R        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKDIQDVMRRQVEKLAFELSVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|295425248|ref|ZP_06817951.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295065024|gb|EFG55929.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 1060

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  AL+  G++   I         D   S  L    L  +   NV               
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPGGVIVQFGG 636

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                + A LE   I    + +     + D+    +++    +     +    +   +++
Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKDLHLNQPKGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADRLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AICDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTDEVKEKITDVTRKLALKLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 IGIMNIQFIV--RDGQVYVIEVNPRASRT----VPFLSKITGIEMAQVASRVI 860



 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALSKTGILDELHIELLGTKLDSIEQAEDREKFKELCKSLGEPVPPSLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  + K  + +          +   + LIEQ
Sbjct: 149 VHHVQEALDFADKIGYPIIVRPAFTMGGTGGGICKNREELARICKNGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDSHDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|91762828|ref|ZP_01264793.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1002]
 gi|91718630|gb|EAS85280.1| Carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           ubique HTCC1002]
          Length = 1074

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G+KV  I+ +                       +  +L   KPD    
Sbjct: 29  SGTQACKALKDEGYKVILINSNPATIMTDPGVADKTYIEPITLEVLEKILKKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  ++A     L+  +I    +   A + + D+ + ++ +   G+ +  S  
Sbjct: 89  TMGGQTALNLAMEAEKKGILKKYKIELIGANSKAISNAEDRKKFRKNMLDIGLDLPKSKV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R    +   I  P +I+P      LG  + K ++     +      +   Q+LIE+
Sbjct: 149 VSHIRDAAKALKQIGLPAIIRPAFTLGGLGGGIAKTEKEYLKIVKDGLHESPVKQILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   I     +     +      +          +        
Sbjct: 209 CLEGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 90/293 (30%), Gaps = 35/293 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------------H 59
           AL+D+GF+   I         D D S  L    LK +  +N++                 
Sbjct: 587 ALKDSGFETIMINCNPETVSTDYDTSDRLYFEPLKEEYVYNIIKKEQQKGNLVGIIAQFG 646

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G              L I  T    +  A   D+ R                   +  + 
Sbjct: 647 GQTPIRLAKFLHDNKLPILGTQYTSIDLAEDRDRFRKLLDRLKLKQAESGIAKTYKQAIQ 706

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELT 178
               I  P +++P        + ++ +   +   + ++      + +LI++++   +E+ 
Sbjct: 707 IAEKIGLPLMVRPSYVLGGRAMEIVHEKSQLKNFVEEAFKAAEENPILIDKFISHAMEVD 766

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  I   +  E++        A+
Sbjct: 767 VDAISDGKQVFVAGIMQHIEEAGIHSG---DSACCLPPVSIKPKLISEIEIQTKKLALAL 823

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +G     F     + +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 NVKGFMNIQFAI--KNDEIYVIEVNPRASRT----VPFVSKAKGLPLAKIASR 870


>gi|260101455|ref|ZP_05751692.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus
           helveticus DSM 20075]
 gi|260084729|gb|EEW68849.1| carbamoyl-phosphate synthase large subunit chain [Lactobacillus
           helveticus DSM 20075]
          Length = 858

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 87/289 (30%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    +P+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   ++            P   +   +   M +  
Sbjct: 639 SINLAAGLERHGVKILGTTVKDLDRAEDREEFDQIIKSLHLHQPQGLTATTHEGVMKAAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L   +       +L++ Y+DG E     +
Sbjct: 699 QLGYPVLVRPSYVLGGKAMEIVYSKDELEEYLHDHADIAEDHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++ +++  +      A+ C+G
Sbjct: 759 SDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVEEKITDVTKKLALALNCKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           I    F+       V+ +E+N +   T     P ++   G    ++   
Sbjct: 816 IMNIQFIV--RDGDVYVIEVNPRASRT----VPFLSKITGIEMAQVATR 858



 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDSSDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSLDYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|89095225|ref|ZP_01168148.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp.
           MED92]
 gi|89080522|gb|EAR59771.1| carbamoyl-phosphate synthase, large subunit [Oceanospirillum sp.
           MED92]
          Length = 1069

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     ++V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADSTYIEPINWKTVEKIIAKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + + G+    +  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKHGVEMIGANADTIDKAEDRDRFDKAMKNIGLECPRAAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALQVQAQLGFPCIIRPSFTMGGTGGGIAYNKEEFIEICERGLDLSPTTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 101/291 (34%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NF 62
             +AL   D GF+   +         D D S  L    +  +    ++H          +
Sbjct: 582 VHAALAARDDGFETIMVNCNPETVSTDYDTSDRLFFEPITLEDVLEIVHVEKPKGVIVQY 641

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPSILVNRFTM 118
           G    ++  + L +      G    A+   + R +       +    P   ++      +
Sbjct: 642 GGQTPLKLAVALEQAGVPIIGTSPEAIDRAEDREQFQQMLKRLGLKQPENATVRSLEEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                +  P V++P        + ++ K++ +   +  +   ++   +L++ +++  +E+
Sbjct: 702 IEADKLGYPLVVRPSYVLGGRAMEIVYKEEELRRYMTTAVQVSNDAPVLLDHFLNAAVEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++    P  +  D+  E++ +       
Sbjct: 762 DIDAVCDGKDVVIGAIMQHIEQAG---VHSGDSACSFPPYSLAADVQDEMREMVRKMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  +   +     +++ +E+N +   T     P ++   G S  ++
Sbjct: 819 LGVVGLMNTQLAY--QDGEIYVIEVNPRASRT----VPFVSKCIGVSLAKI 863


>gi|329296592|ref|ZP_08253928.1| carbamoyl phosphate synthase large subunit [Plautia stali symbiont]
          Length = 1074

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    + S  +    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSICLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALEVAEEVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDCAEDRERFQQAVDRLKLKQPANATVATLEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSTEIQNVMRQQVEKLAFELNVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|294669529|ref|ZP_06734596.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291308442|gb|EFE49685.1| hypothetical protein NEIELOOT_01428 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 1071

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPRSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|218708498|ref|YP_002416119.1| carbamoyl phosphate synthase large subunit [Vibrio splendidus
           LGP32]
 gi|218321517|emb|CAV17469.1| Carbamoyl-phosphate synthase large chain [Vibrio splendidus LGP32]
          Length = 1076

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G        D     +LE   +    +   A   + D+ R  + + + G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKAIGLECPTADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I   ++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----VPFVSKATG 857


>gi|187735121|ref|YP_001877233.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425173|gb|ACD04452.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 1064

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/305 (14%), Positives = 95/305 (31%), Gaps = 38/305 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+ V  ++ +                       +  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYDVVLVNSNPATIMTDPGMADHTYIEPLTVDRITAVIEKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G            + IL+   +      + A A   D++  K+ +   GVPV  S  
Sbjct: 89  NLGGQTALNLASKLHEEGILKQYGVEVIGVDLEAIARGEDRIIFKETMDRIGVPVAKSEP 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P V++P       G  ++   + +   + +  + +  +Q+L+E+
Sbjct: 149 VYSVEEAEKVASELGYPVVLRPAYTMGGTGGGIVYNVEELRQVVPRGLAASLINQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G E                            +      +     +P     ++  ++
Sbjct: 209 CVLGWEELELEVVRDAKGQKITVCFIENVDPMGVHTGDSFCVAPMLTVPQ----EVQDKL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  ++    AIG  G +   F  +    ++  +EIN +   T  S     +   G+    
Sbjct: 265 QDYSYRILDAIGVTGGTNVQFAHNREDNRIIVIEINPR---TSRSS-ALASKATGFPIAS 320

Query: 288 LLLWM 292
           +   +
Sbjct: 321 VSTKL 325



 Score = 37.5 bits (85), Expect = 2.6,   Method: Composition-based stats.
 Identities = 35/263 (13%), Positives = 86/263 (32%), Gaps = 17/263 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
               F+   +     V  +    KP+       G       +   L+   +    +    
Sbjct: 607 NKLYFEPVTV---EDVLAIYEKEKPEGVIVQFGGQ--TPLNIAQALKDAGVKIMGTQPEG 661

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+   ++ + +  +    S          +    I  P +++P       G+ VI
Sbjct: 662 IRLAEDREYFRERMIALNIRQPESGTARSLEEAVELGRRIGYPVMVRPSFVLGGRGMEVI 721

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             ++++    +++   +    +LI++++D  IE     + D +       +   +     
Sbjct: 722 YDEENLKRYGVEAIQVSPEYPMLIDRFLDNAIEAEVDALADGTDTFVATVMEHIELAGIH 781

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                 ++  + P  I     + ++  A    Q    +GI    F     + +V+ +E N
Sbjct: 782 SG---DSACAIPPVTIAPKHIRTIEEHAAKIAQDFQVKGILNVQFAIC--NDEVYIIEAN 836

Query: 264 VQPGMTPVSIFPEMAAYAGYSFR 286
            +   T     P ++   G S  
Sbjct: 837 PRASRT----VPIVSKVTGISLA 855


>gi|156935438|ref|YP_001439354.1| carbamoyl phosphate synthase large subunit [Cronobacter sakazakii
           ATCC BAA-894]
 gi|156533692|gb|ABU78518.1| hypothetical protein ESA_03297 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1074

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|88799655|ref|ZP_01115230.1| carbamoyl-phosphate synthase large subunit [Reinekea sp. MED297]
 gi|88777549|gb|EAR08749.1| carbamoyl-phosphate synthase large subunit [Reinekea sp. MED297]
          Length = 1070

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              + V  ++A  KPD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPIVWQEVEKIIAKEKPDVLLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+   +    +       + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLEKHGVLKKYGVEMIGANADTIDKAEDRDRFDKAMKAIGLETPKSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 AHNMDEAWAIAEELGFPSIIRPSFTMGGSGGGIAYNKDEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPSQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/263 (11%), Positives = 88/263 (33%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP        G        +       I  T    + 
Sbjct: 613 DRLYFEPV---TAEDVLEIIELEKPKGVIVHYGGQTPLKLARELEAAGAPIIGTSPDAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +   +   +     I  P V++P        + ++ +
Sbjct: 670 RAEDRERFQVMVDKLGLLQPENGTARSHDEAVKIAARIGYPLVVRPSYVLGGRAMEIVYR 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   + ++   ++   +L+++++D  IE+    + D    V    +   +       
Sbjct: 730 EEELNRYMNEAVQVSNEAPVLLDRFLDDAIEVDIDCVSDGEQVVIGAIMQHIEQAG---V 786

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P +  ++++         +   G+      +     K++ +E+N +
Sbjct: 787 HSGDSACSLPPYSLPDEAQQQIRDQVKAMALELNVVGLMNVQMAW--QDGKLYIIEVNPR 844

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G S  ++
Sbjct: 845 ASRT----VPFVSKAIGQSLAKI 863


>gi|226941819|ref|YP_002796893.1| CarB [Laribacter hongkongensis HLHK9]
 gi|226716746|gb|ACO75884.1| CarB [Laribacter hongkongensis HLHK9]
          Length = 1068

 Score = 69.9 bits (169), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D + +            V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNMADVTYIEPITWQMVAKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K  ++   + +  S    
Sbjct: 89  TMGGQTALNCALDLARHGVLDQFGVELIGASVEAIDKAEDRDKFKLAMQKIGLECSRSKV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALTIQAEVGFPTIIRPSFTMGGSGGGIAYNREEFLAICERGFEASPTHELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SMLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVQPDTGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 96/294 (32%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   ++GF+   +         D D              V  V A  KP       
Sbjct: 577 VHAALAMRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCAVEKPWGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T   ++ +A   ++ +          P   +    +  +
Sbjct: 637 GGQTPLKLARALEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPQEAL 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ +   +   + ++   ++   +L++++  D IE+
Sbjct: 697 QLAEEIGYPLVVRPSYVLGGRAMEIVHERADLERYMREAVKVSNDSPVLLDRFLNDAIEV 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +   I  E++R      +A
Sbjct: 757 DVDAISDGTDVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPAIQDEIRRQTVAMARA 813

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 814 LNVVGLMNVQFAV--QGDTIYVLEVNPRASRT----VPFVSKVTGQSLAKIAAR 861


>gi|310765119|gb|ADP10069.1| carbamoyl phosphate synthase large subunit [Erwinia sp. Ejp617]
          Length = 1084

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRQRFDKAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++   +
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAM 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   +++        +G RG
Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867


>gi|68535998|ref|YP_250703.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
          jeikeium K411]
 gi|68263597|emb|CAI37085.1| putative D-alanine-D-alanine ligase (fragment) [Corynebacterium
          jeikeium K411]
          Length = 193

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 15/45 (33%), Positives = 21/45 (46%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45
          +AVL GG SSE  VS  S  A    L+   ++V  + +      V
Sbjct: 26 VAVLYGGQSSEHSVSCISAGAIMDHLDPERYEVIPVGITPQGAWV 70


>gi|332534012|ref|ZP_08409863.1| carbamoyl-phosphate synthase large chain [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332036561|gb|EGI73028.1| carbamoyl-phosphate synthase large chain [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 1072

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L    +    +   A   + ++ R    + + G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDVAMKNIGLECPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   I  P +I+P       G  V    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAKDTMSRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPEDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +      +   P   ++      +     
Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLNLLQPENATVTSTEEALLKSVE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   + ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVSASNEAPVLLDRFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  ++   +++        +G  G
Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLSQEVQDVMRKQVTDMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       KV+ +E+N +   T     P ++   G +  ++   
Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866


>gi|325266826|ref|ZP_08133497.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans
           ATCC 33394]
 gi|324981567|gb|EGC17208.1| carbamoyl-phosphate synthase, large subunit [Kingella denitrificans
           ATCC 33394]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|241760250|ref|ZP_04758346.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens
           SK114]
 gi|241319361|gb|EER55826.1| carbamoyl-phosphate synthase, large subunit [Neisseria flavescens
           SK114]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240127438|ref|ZP_04740099.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268685811|ref|ZP_06152673.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-93-1035]
 gi|268626095|gb|EEZ58495.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-93-1035]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + +I   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240122735|ref|ZP_04735691.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID332]
 gi|268681334|ref|ZP_06148196.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID332]
 gi|268621618|gb|EEZ54018.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID332]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240117100|ref|ZP_04731162.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID1]
 gi|240124927|ref|ZP_04737813.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           SK-92-679]
 gi|268602785|ref|ZP_06136952.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID1]
 gi|268683505|ref|ZP_06150367.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-92-679]
 gi|268586916|gb|EEZ51592.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID1]
 gi|268623789|gb|EEZ56189.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           SK-92-679]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240114896|ref|ZP_04728958.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID18]
 gi|260441288|ref|ZP_05795104.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
 gi|268600552|ref|ZP_06134719.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID18]
 gi|291044644|ref|ZP_06570353.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
 gi|268584683|gb|EEZ49359.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           PID18]
 gi|291011538|gb|EFE03534.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI2]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240079943|ref|ZP_04724486.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
 gi|268596082|ref|ZP_06130249.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
 gi|268549870|gb|EEZ44889.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA19]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240013361|ref|ZP_04720274.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           DGI18]
 gi|240120434|ref|ZP_04733396.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           PID24-1]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|239998178|ref|ZP_04718102.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
 gi|240015805|ref|ZP_04722345.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA6140]
 gi|268594030|ref|ZP_06128197.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
 gi|268547419|gb|EEZ42837.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           35/02]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|240112150|ref|ZP_04726640.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           MS11]
 gi|254492955|ref|ZP_05106126.1| carbamoyl-phosphate synthase subunit large chain [Neisseria
           gonorrhoeae 1291]
 gi|268598207|ref|ZP_06132374.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           MS11]
 gi|226511995|gb|EEH61340.1| carbamoyl-phosphate synthase subunit large chain [Neisseria
           gonorrhoeae 1291]
 gi|268582338|gb|EEZ47014.1| carbamoyl-phosphate synthase subunit large [Neisseria gonorrhoeae
           MS11]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 97/288 (33%), Gaps = 35/288 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL ++GF+   +         D D              V  ++    P     ++H    
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFDPLTLEDVLEIVRTENPWGV--IVHYGGQ 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
               +   L    +    +   +   + D+ R ++V++  G+   P+ + +         
Sbjct: 640 TPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCG 180
             I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+   
Sbjct: 700 EEIGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +           +   + P  +  +I  E++R       A+G 
Sbjct: 760 CVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F        VF LE+N +   T     P ++   G    ++
Sbjct: 817 VGLMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|261378475|ref|ZP_05983048.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC
           14685]
 gi|269145269|gb|EEZ71687.1| carbamoyl-phosphate synthase, large subunit [Neisseria cinerea ATCC
           14685]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|261365571|ref|ZP_05978454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC
           25996]
 gi|288565894|gb|EFC87454.1| carbamoyl-phosphate synthase, large subunit [Neisseria mucosa ATCC
           25996]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|225024768|ref|ZP_03713960.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC
           23834]
 gi|224942475|gb|EEG23684.1| hypothetical protein EIKCOROL_01655 [Eikenella corrodens ATCC
           23834]
          Length = 1069

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|59800515|ref|YP_207227.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|293397753|ref|ZP_06641959.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae
           F62]
 gi|59717410|gb|AAW88815.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           FA 1090]
 gi|291611699|gb|EFF40768.1| carbamoyl-phosphate synthase, large subunit [Neisseria gonorrhoeae
           F62]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + +I   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIIHSAEQLQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|27364027|ref|NP_759555.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus
           CMCP6]
 gi|37678809|ref|NP_933418.1| carbamoyl phosphate synthase large subunit [Vibrio vulnificus
           YJ016]
 gi|320157410|ref|YP_004189789.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus
           MO6-24/O]
 gi|31340016|sp|Q8DEM2|CARB_VIBVU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|71152356|sp|Q7MNU0|CARB_VIBVY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27360144|gb|AAO09082.1| Carbamoyl-phosphate synthase large chain [Vibrio vulnificus CMCP6]
 gi|37197550|dbj|BAC93389.1| carbamoylphosphate synthase large subunit [Vibrio vulnificus YJ016]
 gi|319932722|gb|ADV87586.1| carbamoyl-phosphate synthase large chain [Vibrio vulnificus
           MO6-24/O]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AIEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|271502091|ref|YP_003335117.1| carbamoyl-phosphate synthase large subunit [Dickeya dadantii
           Ech586]
 gi|270345646|gb|ACZ78411.1| carbamoyl-phosphate synthase, large subunit [Dickeya dadantii
           Ech586]
          Length = 1074

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                Q     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVN 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELAVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|77166030|ref|YP_344555.1| carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrosococcus oceani ATCC 19707]
 gi|254436388|ref|ZP_05049894.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani
           AFC27]
 gi|76884344|gb|ABA59025.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus oceani
           ATCC 19707]
 gi|207088078|gb|EDZ65351.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus oceani
           AFC27]
          Length = 1073

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKSLKEEGYRVILVNSNPATIMTDPELADATYIEPITWKTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   + ILE  ++    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYDVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P VI+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICTIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVDPENGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +++  +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIISLEQPQGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I  T    +  A   ++ +          P   +       +     
Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQWLIEKLGLKQPPNRTARTQEEAIRLAAE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++     +   + ++ S ++   +L+++++ +  E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +   ++   +   + +   G
Sbjct: 767 CDGEQVMVGGIMEHIEQAG---VHSGDSACALPPFSLSAAVQNRLREQVYNMARELKVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F     + +++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAI--QANEIYILEVNPRASRT----VPFVSKTIGIPLAKVAAR 866


>gi|119469582|ref|ZP_01612486.1| carbamoyl-phosphate synthase large subunit [Alteromonadales
           bacterium TW-7]
 gi|119447117|gb|EAW28387.1| carbamoyl-phosphate synthase large subunit [Alteromonadales
           bacterium TW-7]
          Length = 1072

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L    +    +   A   + ++ R    + + G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDTAMKNIGLECPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   I  P +I+P       G  V    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAKDTMSRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYETEVVRDKKDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      +     
Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLDLLQPENATVTSTEEAILKSAE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   + ++   ++   +L++ ++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVQASNEAPVLLDHFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  ++   +++        +G  G
Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLSQEVQDVMRKQVTDMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       KV+ +E+N +   T     P ++   G +  ++   
Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866


>gi|315038738|ref|YP_004032306.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325957174|ref|YP_004292586.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus 30SC]
 gi|312276871|gb|ADQ59511.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1112]
 gi|325333739|gb|ADZ07647.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           acidophilus 30SC]
          Length = 1062

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  AL+  G++   I         D   S  L    L  +   NV               
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVGAIVQFGG 636

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                + A LE   +    + +     + D+    +++ +  +     +    +   +++
Sbjct: 637 QTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPNGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTEEVKEKITDVTRKLALTLHC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNREELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPTSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|251788195|ref|YP_003002916.1| carbamoyl phosphate synthase large subunit [Dickeya zeae Ech1591]
 gi|247536816|gb|ACT05437.1| carbamoyl-phosphate synthase, large subunit [Dickeya zeae Ech1591]
          Length = 1074

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSNRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                Q     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARQLEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVSTIDQAVEKAVG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  E++R        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDEMRRQVEKLAFELSVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|237807800|ref|YP_002892240.1| carbamoyl-phosphate synthase, large subunit [Tolumonas auensis DSM
           9187]
 gi|237500061|gb|ACQ92654.1| carbamoyl-phosphate synthase, large subunit [Tolumonas auensis DSM
           9187]
          Length = 1075

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPEMADATYIEPITWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A   + D+ R    + S G+    +  
Sbjct: 89  TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRRRFDLAMRSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMDEAWDVQKTVGFPCIIRPSFTMGGSGGGIAYNPEEFVEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPDDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 96/322 (29%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A AL + G++   +         D D   
Sbjct: 561 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G              + I  T    +  A  
Sbjct: 614 RLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLSRALEAAGVPIIGTSPDAIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++      ++    I  P V++P        + ++  +  +
Sbjct: 674 RERFQQAVERLGLKQPQNTTVTAMEQAVEKAKEIGYPLVVRPSYVLGGRAMEIVSDEIDL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                ++ S ++   +L++ ++D  IEL    + D  + V    +   +           
Sbjct: 734 RRYFNEAVSVSNESPVLLDHFLDNAIELDVDAICDGEVVVIGGVMEHIEQCGIHSG---D 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +   + P  +  D+  E++         +   G+    F        ++ +E+N +   T
Sbjct: 791 SGCSLPPYSLKADVLAEIREQVRKLAMELKVVGLMNVQFAV--KDDVIYLIEVNPRAART 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 849 ----VPFVSKATGAPLAKIAAR 866


>gi|260596463|ref|YP_003209034.1| carbamoyl phosphate synthase large subunit [Cronobacter turicensis
           z3032]
 gi|260215640|emb|CBA27925.1| Carbamoyl-phosphate synthase large chain [Cronobacter turicensis
           z3032]
          Length = 1074

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|254507846|ref|ZP_05119976.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus 16]
 gi|219549219|gb|EED26214.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus 16]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTLEQAVEKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F     + KV+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KNNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|168061790|ref|XP_001782869.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162665647|gb|EDQ52324.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1084

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                     V  VL   +PD    
Sbjct: 16  SGTQACKALKEEGYEVILINSNPATIMTDPETADRTYITPMTPELVEKVLEKERPDAILP 75

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+   K+ ++  G+   PS +
Sbjct: 76  TMGGQTALNLACALAKSGVLDKYNVELIGAKLDAIEKAEDRELFKKAMAKIGINSPPSGI 135

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         + +   P +I+P       G  +    +          S +   Q+L+E
Sbjct: 136 AHTMDQCFEIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFETICKAGLSASINSQVLVE 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +  S  +      +          +  +   +
Sbjct: 196 KSLLGWKEYELEVMRDLADNVVIICSIENIDSMGVHTGDSITVAPAQTLTDKEYQRLRDQ 255

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 256 SVAIIREIGVECGGSNVQFAVNPKNGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 311

Query: 290 LWM 292
             +
Sbjct: 312 AKL 314


>gi|15677690|ref|NP_274851.1| carbamoyl phosphate synthase large subunit [Neisseria meningitidis
           MC58]
 gi|22095532|sp|Q9JXW8|CARB_NEIMB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|7227111|gb|AAF42189.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           MC58]
 gi|316985462|gb|EFV64409.1| carbamoyl-phosphate synthase large chain [Neisseria meningitidis
           H44/76]
 gi|325139516|gb|EGC62056.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           CU385]
 gi|325200914|gb|ADY96369.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           H44/76]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|332160251|ref|YP_004296828.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
 gi|318607179|emb|CBY28677.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica
           subsp. palearctica Y11]
 gi|325664481|gb|ADZ41125.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. palearctica 105.5R(r)]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867


>gi|304388391|ref|ZP_07370501.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ATCC 13091]
 gi|304337623|gb|EFM03782.1| carbamoyl-phosphate synthase, large subunit [Neisseria meningitidis
           ATCC 13091]
          Length = 1071

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAMNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVRAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDCKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|238752267|ref|ZP_04613747.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC
           43380]
 gi|238709535|gb|EEQ01773.1| Carbamoyl-phosphate synthase large chain [Yersinia rohdei ATCC
           43380]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      +D    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|238764646|ref|ZP_04625591.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii
           ATCC 33638]
 gi|238697138|gb|EEP89910.1| Carbamoyl-phosphate synthase large chain [Yersinia kristensenii
           ATCC 33638]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|123440986|ref|YP_001004975.1| carbamoyl phosphate synthase large subunit [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|122087947|emb|CAL10735.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica
           subsp. enterocolitica 8081]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|238786676|ref|ZP_04630477.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii
           ATCC 33641]
 gi|238725044|gb|EEQ16683.1| Carbamoyl-phosphate synthase large chain [Yersinia frederiksenii
           ATCC 33641]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPTGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKASG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|51594975|ref|YP_069166.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145600406|ref|YP_001164482.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Pestoides F]
 gi|153947267|ref|YP_001402408.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|170025797|ref|YP_001722302.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186893977|ref|YP_001871089.1| carbamoyl phosphate synthase large subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|51588257|emb|CAH19864.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|145212102|gb|ABP41509.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides F]
 gi|152958762|gb|ABS46223.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|169752331|gb|ACA69849.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186697003|gb|ACC87632.1| carbamoyl-phosphate synthase, large subunit [Yersinia
           pseudotuberculosis PB1/+]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|22127566|ref|NP_670989.1| carbamoyl phosphate synthase large subunit [Yersinia pestis KIM 10]
 gi|45443429|ref|NP_994968.1| carbamoyl phosphate synthase large subunit [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108810065|ref|YP_653981.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Antiqua]
 gi|108810520|ref|YP_646287.1| carbamoyl phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|150260481|ref|ZP_01917209.1| carbamoyl-phosphate synthase large chain [Yersinia pestis
           CA88-4125]
 gi|162418950|ref|YP_001605358.1| carbamoyl phosphate synthase large subunit [Yersinia pestis Angola]
 gi|165927321|ref|ZP_02223153.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937764|ref|ZP_02226325.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166008680|ref|ZP_02229578.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166211869|ref|ZP_02237904.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167401670|ref|ZP_02307164.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167421983|ref|ZP_02313736.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167426016|ref|ZP_02317769.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|218927680|ref|YP_002345555.1| carbamoyl phosphate synthase large subunit [Yersinia pestis CO92]
 gi|229836935|ref|ZP_04457100.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides A]
 gi|229840369|ref|ZP_04460528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229842449|ref|ZP_04462604.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229900708|ref|ZP_04515832.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|270487923|ref|ZP_06204997.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM
           D27]
 gi|294502578|ref|YP_003566640.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Z176003]
 gi|22095514|sp|Q8ZIL4|CARB_YERPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21960671|gb|AAM87240.1|AE013972_7 carbamoyl-phosphate synthase large subunit [Yersinia pestis KIM 10]
 gi|45438298|gb|AAS63845.1| carbamoyl-phosphate synthase large chain [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774168|gb|ABG16687.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|108781978|gb|ABG16036.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Antiqua]
 gi|115346291|emb|CAL19162.1| carbamoyl-phosphate synthase large chain [Yersinia pestis CO92]
 gi|149289889|gb|EDM39966.1| carbamoyl-phosphate synthase large chain [Yersinia pestis
           CA88-4125]
 gi|162351765|gb|ABX85713.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis
           Angola]
 gi|165914176|gb|EDR32792.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920783|gb|EDR38031.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165992019|gb|EDR44320.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166206615|gb|EDR51095.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166960120|gb|EDR56141.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167049052|gb|EDR60460.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167054939|gb|EDR64739.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|229682047|gb|EEO78139.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Nepal516]
 gi|229690759|gb|EEO82813.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. India 195]
 gi|229696735|gb|EEO86782.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Orientalis str. PEXU2]
 gi|229705878|gb|EEO91887.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Pestoides A]
 gi|262360608|gb|ACY57329.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           D106004]
 gi|262364554|gb|ACY61111.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           D182038]
 gi|270336427|gb|EFA47204.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis KIM
           D27]
 gi|294353037|gb|ADE63378.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis
           Z176003]
 gi|320016956|gb|ADW00528.1| carbamoyl-phosphate synthase large subunit [Yersinia pestis biovar
           Medievalis str. Harbin 35]
          Length = 1077

 Score = 69.5 bits (168), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNLATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|315126859|ref|YP_004068862.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas sp.
           SM9913]
 gi|315015373|gb|ADT68711.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas sp.
           SM9913]
          Length = 1072

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L    +    +   A   + ++ R    + + G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKHGVELIGATADAIDKAENRERFDVAMRNIGLECPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   I  P +I+P       G  V    +       +    +   +LLI++
Sbjct: 149 AHSMDEARDTMTRIGLPCIIRPSFTMGGTGGGVAYNMEEFEEICERGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVNPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      +     
Sbjct: 647 LKLARELEANGVPVIGTSPDAIDRAEDRERFQQLVERLDLLQPENATVTSTEEAILKSVE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +   + ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYMTEAVSASNEAPVLLDRFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  ++   +++        +G  G
Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPAHSLTQEVQDVMRKQVTDMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       KV+ +E+N +   T     P ++   G +  ++   
Sbjct: 824 LMNTQFAV--KDGKVYLIEVNPRAART----VPFVSKATGVALAKVAAR 866


>gi|308185623|ref|YP_003929754.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1]
 gi|308056133|gb|ADO08305.1| carbamoyl-phosphate synthase large chain [Pantoea vagans C9-1]
          Length = 1075

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +     +LE   +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S        FP     A  
Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLKLKQPANATVATLEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLNQEIQNVMRQQVEKLAFELNVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|304396527|ref|ZP_07378408.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB]
 gi|304356036|gb|EFM20402.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. aB]
          Length = 1075

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +     +LE   +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERHGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S        FP     A  
Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDSIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQNVMRQQVEKLAFELNVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|27904637|ref|NP_777763.1| carbamoyl phosphate synthetase large chain [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
 gi|29427630|sp|P59448|CARB_BUCBP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27904034|gb|AAO26868.1| carbamoyl phosphate synthetase large chain [Buchnera aphidicola
           str. Bp (Baizongia pistaciae)]
          Length = 1076

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 37/314 (11%), Positives = 91/314 (28%), Gaps = 40/314 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+K+  +         D D +            +  ++    PD    
Sbjct: 29  SGAQACKALKELGYKIILVNSNPATIMTDPDMADSTYIEPIHWSIIKKIIQQEHPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G   +++   + R     S   + +  +    
Sbjct: 89  TMGGQTALNCVLDLDNHGILKKHKIEIIGATINSIKKAENRKLFEKSMNKIGLKTAKCEI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              ++  H     I  P +++P       G  +    +       +    +   +LLI++
Sbjct: 149 VHNINMAHNVIDKIGFPAIVRPSFTMGGSGGGIAHNYEEFKNICTEGLKLSPSKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     +   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNNNCIIVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQNMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G +   F  +P +  +  +E+N  P ++  S            ++AA  
Sbjct: 269 ISILKEIGVETGGANVQFAINPDNGDMIVIEMN--PRVSRSSALASKATGFPIAKIAAQL 326

Query: 280 YAGYSFRELLLWMV 293
             G +  EL   ++
Sbjct: 327 AVGLTLDELKNDII 340



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 102/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   I           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFETIMINCNPETVSTDYDISN 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     ++  ++   KP        G        +     + I  T    +  + +
Sbjct: 615 RLYFEPIILETILEIVRIEKPYGVIIQYGGQTPLKLAKELEQANVPIIGTSPDSIDKSEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +    + +   P   ++   +  +     I  P +I+P        + ++  ++++
Sbjct: 675 RKRFQKIVSMLNLKQPKNATVTNLQEAIIQAKSIKYPIMIRPSYVLGGQSMEIVYDEKNL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                          +L++ Y++       V  DA  D T + +     +  +    S +
Sbjct: 735 TNFFNNVCINFKKFPILLDHYLEN---AIEVDVDAICDGTHVFIGGIMEHIEQAGIHSGD 791

Query: 211 STHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S   LPA      I  E++        ++  +G+    F     +  ++ +E+N +   T
Sbjct: 792 SACSLPAYTLNKNIQNEIRSQVKKLALSLSVKGLMNVQFAI--QNENIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G +  ++   
Sbjct: 850 ----IPFVSKATGVALAKIAAR 867


>gi|295696784|ref|YP_003590022.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
 gi|295412386|gb|ADG06878.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
          Length = 1080

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 87/286 (30%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   GF+   I         D D              V  V+     D  +    G   
Sbjct: 600 ALRRLGFETVIINNNPETVSTDFDTADRLYFEPLTAEDVLNVIEREGIDQVYVQFGGQTA 659

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + +  T    L +A   ++ R              +             
Sbjct: 660 INLAAELAEYGVSVCGTPVEALDAAEDRERFRQLLDQLEIPQTRGGTAFDVPGARAIAEA 719

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + V    Q +   + +++       +L++ Y+ G E+    + 
Sbjct: 720 VGYPVVVRPSYVIGGRAMEVCWNVQELEAYMSRAARVTPDHPVLVDHYLPGKEVEVDAIS 779

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P +    D   ++ R+     +A+G  G
Sbjct: 780 DGRDVLI----PGIFEHIERAGVHSGDSMAVYPDQTLTQDERAQMIRVTEQIARALGIVG 835

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+       V+ LE+N +   T     P ++   G    EL
Sbjct: 836 LMNIQFVIL--DGTVYVLEVNPRASRT----VPILSKVTGVPMVEL 875



 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G++V  +         D+D             S+  ++A  +PD     
Sbjct: 48  GTQACKALREEGYRVILVNSNPATIMTDLDMADVVYLEPLTPESLEAIIAKERPDGLLPT 107

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  V    + +L+   +    + + +   + D+   K+ +      VP    +
Sbjct: 108 LGGQTGLNLAVALAERGVLDRYGVRLLGTPLASIQKAEDRELFKETMERIGEPVPESAIV 167

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M     I  P +++P       G  + +  +     L++    +   Q+L+E+ 
Sbjct: 168 HNMEEGMAFIEQIGLPVILRPAYTLGGTGGGIAETLEEFKAILMRGLRQSPIGQVLVERS 227

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T I V   +       ++  +        +    Y+ ++  A
Sbjct: 228 IRGW-KEIEYEVMRDGAGTCITVCNMENLDPVGVHTGDSIVVAPSQTLTDREYQMLRSAA 286

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 287 LRIIDALEIEGGCNVQFALDPHSERYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 342

Query: 292 M 292
           +
Sbjct: 343 I 343


>gi|291557307|emb|CBL34424.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 1092

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 90/299 (30%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 49  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 108

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +   G+ +  S  
Sbjct: 109 NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 168

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 169 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 228

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          D +               +            +P  +  ++    
Sbjct: 229 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQDM- 287

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              ++   ++I   G     F  +P + ++  +EIN +   T  S     +   G+   
Sbjct: 288 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 339



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 98/299 (32%), Gaps = 33/299 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL+  GF+   +         D D S  L    L  +   + +H      G++       
Sbjct: 601 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 659

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122
                  L+   +    +      L+ D+   + ++    +P+  S +       ++  +
Sbjct: 660 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLKIPMPESGMAVNVDEALEIAN 719

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++  D+ + + +  +        +LI++++          
Sbjct: 720 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241
            DA  D     VP    +       S +S  +LP+    +     ++         +   
Sbjct: 777 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVC 836

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+    +        V+ LE N +   T     P ++     +  +L   ++  +   +
Sbjct: 837 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQIITSSLTGK 889


>gi|206579070|ref|YP_002240498.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae
           342]
 gi|288937198|ref|YP_003441257.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola
           At-22]
 gi|290512619|ref|ZP_06551985.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55]
 gi|206568128|gb|ACI09904.1| carbamoyl-phosphate synthase, large subunit [Klebsiella pneumoniae
           342]
 gi|288891907|gb|ADC60225.1| carbamoyl-phosphate synthase, large subunit [Klebsiella variicola
           At-22]
 gi|289774960|gb|EFD82962.1| carbamoyl-phosphate synthase, large subunit [Klebsiella sp. 1_1_55]
          Length = 1074

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVERAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 768 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMREQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|323466240|gb|ADX69927.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           helveticus H10]
          Length = 1062

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+  G++   I+ +                       V  V    KP+       G  
Sbjct: 579 KALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   +             P   +   +   + +  
Sbjct: 639 SINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLKLNQPQGLTATTHEGVIAAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   L           +L++ Y+DG E     +
Sbjct: 699 KLGYPVLVRPSYVLGGKAMEIVYTKAELEEYLQDHVDIAADHPILVDDYLDGRECDVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     ++  ++  +       + C G
Sbjct: 759 CDGKTVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKDKITEVTRKLALELNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALRDEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVDSVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLASIEQAEDREKFKELCQKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +      +          +   + LIE+
Sbjct: 149 VKTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNHDELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHNNNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|209694178|ref|YP_002262106.1| carbamoyl phosphate synthase large subunit [Aliivibrio salmonicida
           LFI1238]
 gi|208008129|emb|CAQ78271.1| carbamoyl-phosphate synthase large chain [Aliivibrio salmonicida
           LFI1238]
          Length = 1076

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +            +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRGGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCTIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 92/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTAMEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AIEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIAGIMEHIEQAGVHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNEVYLIEVNPRAART----IPFVSKATG 857


>gi|187735236|ref|YP_001877348.1| hypothetical protein Amuc_0730 [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425288|gb|ACD04567.1| conserved hypothetical protein [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 341

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/279 (20%), Positives = 108/279 (38%), Gaps = 9/279 (3%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN--FGEDGLVQAILELLEIP 78
               A++D G+ V      +   +  A    D  F++++       +  + +  E +++P
Sbjct: 48  NIYKAIQDIGYDVVS--SSKPYSVQFAKGNVDYVFSLMNRFAMSRPEIFISSYCEFIQVP 105

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP-PYVIKPLKGGS 137
           Y  +     A++ DK  +K V  S  + V   I ++           P PY +K    G+
Sbjct: 106 YLGAPPNIRAIAEDKFLTKMVFRSLELNVPEGIGLSGEKGIPAQAPFPGPYFVKKRF-GA 164

Query: 138 SLGIIVIKKDQSIPLDL--LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           + G I      S    +          G ++L+EQY +GI++T  V+G  +  +     P
Sbjct: 165 ASGGIREDSICSSWKAVGSCARRLMEEGHEVLVEQYCEGIDVTVPVLGGENPVILGYVQP 224

Query: 196 KSDFYSYELKYSSLNSTH-VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           KSD     +        H         D+ +++         A+G     R D+  D  +
Sbjct: 225 KSDKPGSIITEDLKLHDHLGYQLVSVQDMEQDIASDVRKIWSALGPMDYFRIDYRIDFET 284

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   LE+N+   +         AA  GYS  +LL +++
Sbjct: 285 GERRILEMNICCHLGKSGSICLAAAEHGYSQADLLKYII 323


>gi|149196836|ref|ZP_01873889.1| carbamoyl-phosphate synthase large subunit [Lentisphaera araneosa
           HTCC2155]
 gi|149139946|gb|EDM28346.1| carbamoyl-phosphate synthase large subunit [Lentisphaera araneosa
           HTCC2155]
          Length = 1079

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 34/304 (11%), Positives = 89/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                +  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPEFSDRTYIEPLTTEFLEKIIERERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    +       + ++ R + ++   G+ +     
Sbjct: 89  TLGGQTALNAAIALHDEGILEKYNVMMLGATPDVIDKAENRDRFRVLMEGIGLDMPRCAT 148

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   +         P +I+P       G  +   D+            +  +++LI
Sbjct: 149 ATDMEGCYKVREWLGGEYPLIIRPSFTMGGSGGGIAYNDEEFDRICKTGMDMSPTNEVLI 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           ++ + G +     +     D   I     +F    +      +   +      +      
Sbjct: 209 DESILGWKEYELEVVRDKNDNAIIVCSIENFDPVGVHTGDSITVAPIQTLTDREYQIMRD 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   +  +     G S   +   P + ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 KSIAVLREVGVETGGSNVQWAVCPKTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 90/290 (31%), Gaps = 34/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AGF+   +         D D              V  +    + D A     G   
Sbjct: 594 ALREAGFETIMVNSNPETVSTDYDTSDKLYFEPLTLEDVLAIYESEECDGAIVQFGGQTP 653

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + +  T    +  A   D  +          P     +     +     
Sbjct: 654 LNLAADLKANGVNVIGTSPESIEQAEDRDFFQKLVTELDIKQPANGIAVNVEQAVAIADR 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +   +    +L+++++D       V  
Sbjct: 714 IEYPVLVRPSFVLGGRAMAIVYDEPELRKYMETAVDVSDDKPILVDKFLDD---AVEVDV 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D   D     +     +       S +S   +P+    D +   +++  +   +A+  RG
Sbjct: 771 DCISDGETSVIGAIMEHVEPAGVHSGDSATCIPSMTLTDSVKDVIRQHTYNLAKALKVRG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           +    +     S +V+ +E+N +   T     P ++   G     +  L+
Sbjct: 831 LMNIQYAV--QSGEVYIIEVNPRASRT----VPYVSKAIGVPMAKYASLV 874


>gi|324112566|gb|EGC06543.1| carbamoyl-phosphate synthase [Escherichia fergusonii B253]
 gi|325495963|gb|EGC93822.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii
           ECD227]
          Length = 1074

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|323964869|gb|EGB60336.1| carbamoyl-phosphate synthase [Escherichia coli M863]
 gi|323975800|gb|EGB70896.1| carbamoyl-phosphate synthase [Escherichia coli TW10509]
 gi|327255008|gb|EGE66611.1| carbamoyl-phosphate synthase large chain [Escherichia coli STEC_7v]
          Length = 1072

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|218547480|ref|YP_002381271.1| carbamoyl phosphate synthase large subunit [Escherichia fergusonii
           ATCC 35469]
 gi|218355021|emb|CAQ87627.1| carbamoyl-phosphate synthase large subunit [Escherichia fergusonii
           ATCC 35469]
          Length = 1073

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|170680299|ref|YP_001742150.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           SMS-3-5]
 gi|170518017|gb|ACB16195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           SMS-3-5]
          Length = 1073

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|150014921|ref|YP_001307175.1| carbamoyl phosphate synthase large subunit [Clostridium
           beijerinckii NCIMB 8052]
 gi|189081827|sp|A6LPD9|CARB_CLOB8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|149901386|gb|ABR32219.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           beijerinckii NCIMB 8052]
          Length = 1069

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 102/299 (34%), Gaps = 36/299 (12%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KPD       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIEKEKPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
                  +   L+   I    +      ++ D+ +  +++   G+       I      +
Sbjct: 640 Q--TAIKLANFLKEQNIVTLGTTADQIDMAEDREKFDELLERLGISRPKGKGIWSLEEGL 697

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+ 
Sbjct: 698 EEAKRLKFPVLVRPSYVIGGQGMEITHDEEELTYYLENAFAKDSKNPILIDKYLMGREIE 757

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
              + D    +     P    +       S +S  + P   I   I  +V         A
Sbjct: 758 VDAISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNISDKIKADVLEYTKKLALA 813

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IG +G+    F+      +++ +E+N +   T     P ++  +G    +L   ++  A
Sbjct: 814 IGIKGMINIQFI--EFEGELYVIEVNPRASRT----VPYISKVSGVPIVDLATQVMLGA 866



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEALKSEGIEVVLVNSNPATIMTDKEVADKVYLEPLTLEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +  V+      LE   +    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELHDSGILEKYNVKVIGTSIASIKEGEDRELFRDMMNRIGEPVIKSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTDLTAGLEFANKIGYPVIVRPAYTLGGSGGGIADDEEQLRTILESGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGW-KEVEYEVMRDSYGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|323491018|ref|ZP_08096210.1| carbamoyl phosphate synthase large subunit [Vibrio brasiliensis LMG
           20546]
 gi|323314682|gb|EGA67754.1| carbamoyl phosphate synthase large subunit [Vibrio brasiliensis LMG
           20546]
          Length = 1076

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIEQAVEKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|317493341|ref|ZP_07951763.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium
           9_2_54FAA]
 gi|316918734|gb|EFV40071.1| carbamoyl-phosphate synthase [Enterobacteriaceae bacterium
           9_2_54FAA]
          Length = 1074

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +   V      P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVVRLGLKQPANATVSTIEQAIEKGAA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++ A      +G RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQAEKLAMELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|219871954|ref|YP_002476329.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis
           SH0165]
 gi|219692158|gb|ACL33381.1| carbamoyl phosphate synthase large subunit [Haemophilus parasuis
           SH0165]
          Length = 1066

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R KQ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL +AG++   +         D D S  L    L  +              ++H      
Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEVVRVEKPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123
             +   L    +    +   +   + D+ R ++++    +      +    +  +   + 
Sbjct: 642 LKLANALHENGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVAVANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  +    +  +I  E++R       A+G +G
Sbjct: 762 CDGENMVIGGIMQHVEQAGIHSG---DSACSLPAYSLSGEILDEIRRQTKEMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QNDVVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861


>gi|167855248|ref|ZP_02478017.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis
           29755]
 gi|167853612|gb|EDS24857.1| carbamoyl-phosphate synthase large subunit [Haemophilus parasuis
           29755]
          Length = 1066

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNMADVTYIEPIEWRTVAKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R KQ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLSRNGVLKQFNVELIGASEDAIDKAEDRGRFKQAMEKIGLSCPKSFI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 AHTLEEALKAQEAVGFPTLIRPSFTMGGSGGGIAYNRDEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKEDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 99/289 (34%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL +AG++   +         D D S  L    L  +              ++H      
Sbjct: 582 ALREAGYETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEVVRVEKPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHL 123
             +   L    +    +   +   + D+ R ++++    +      +    +  +   + 
Sbjct: 642 LKLANALYENGVNIIGTSADSIDAAEDRERFQKILHDLNLKQPANRTARNAQEAVALANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P V++P        + ++  D+ +   + ++ S ++   +L++ +  + IE+    +
Sbjct: 702 VGYPLVVRPSYVLGGRAMQIVYNDEELNKYMREAVSVSNDSPILLDHFLNNAIEVDVDCI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  +    +  +I  E++R       A+G +G
Sbjct: 762 CDGENMVIGGIMQHVEQAGIHSG---DSACSLPAYSLSGEILDEIRRQTKEMAFALGVKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAV--QNDVVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 861


>gi|327183879|gb|AEA32326.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           amylovorus GRL 1118]
          Length = 1062

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  AL+  G++   I         D   S  L    L  +   NV               
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVCDLEKPVGAIVQFGG 636

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDS 120
                + A LE   +    + +     + D+    +++ +  +     +    +   +++
Sbjct: 637 QTSINLAAGLEKHGVKILGTKVKDVNRAEDRELFDEIIKNLQLNQPKGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKDELEEYLQDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFTEEVKEKITDVTRKLALTLHC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 814 VGIMNIQFIV--RDGEVYVIEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMALALAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICHNRKELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPTSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|282853025|ref|ZP_06262362.1| conserved domain protein [Propionibacterium acnes J139]
 gi|282582478|gb|EFB87858.1| conserved domain protein [Propionibacterium acnes J139]
          Length = 96

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           PA I     +    +A +  + +   GISR D + D  S +  +LE    PGMT  S+ P
Sbjct: 12  PADISGTAAQTATAMARVVQKELDFSGISRVDAIVDE-SGRPVFLEAGAAPGMTATSLVP 70

Query: 276 EMAAYAGYSFRELLLWMVED 295
                AG    E+   +V+D
Sbjct: 71  VAMKAAGLDLGEVCSRLVDD 90


>gi|117618944|ref|YP_857231.1| carbamoyl phosphate synthase large subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560351|gb|ABK37299.1| carbamoyl-phosphate synthase, large subunit [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMRSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNPEEFVEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++    P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVENPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +S         P   ++      + +   
Sbjct: 647 LKLARALEANGVPVIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAVLTAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I+ P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 ITYPLVVRPSYVLGGRAMEIVYDEQDLRRYFAEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  +   I  E++         +G  G
Sbjct: 767 CDGTDVVIGGIMEHIEQAGIHSG---DSACSLPPYTLSKAIQDEMREQVRKLALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|291531168|emb|CBK96753.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           70/3]
          Length = 1075

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 32  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 91

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +   G+ +  S  
Sbjct: 92  NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 151

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 152 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 211

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          D +               +            +P  +  ++ +  
Sbjct: 212 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 270

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              ++   ++I   G     F  +P + ++  +EIN +   T  S     +   G+   
Sbjct: 271 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 322



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 99/299 (33%), Gaps = 33/299 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL+  GF+   +         D D S  L    L  +   + +H      G++       
Sbjct: 584 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 642

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122
                  L+   +    +      L+ D+   + ++   G+P+  S +       ++  +
Sbjct: 643 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALEIAN 702

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++  D+ + + +  +        +LI++++          
Sbjct: 703 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 759

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCR 241
            DA  D     VP    +       S +S  +LP+    +     ++         +   
Sbjct: 760 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSLNLTEKQVTTIKDYTKKIAVEMNVC 819

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+    +        V+ LE N +   T     P ++     +  +L   ++  +   +
Sbjct: 820 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCNINMVQLATQIITSSLTGK 872


>gi|167750864|ref|ZP_02422991.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702]
 gi|167656043|gb|EDS00173.1| hypothetical protein EUBSIR_01847 [Eubacterium siraeum DSM 15702]
          Length = 1072

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 39/299 (13%), Positives = 91/299 (30%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPDVADITYIEPLNLDRLTQIIEQERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELDKAGVLKKFNVQVIGVQVDAIERGEDRIEFKNAMKDLGIGMPRSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     + +   +    +   Q+L+E+
Sbjct: 149 AYTIDEAVKIAEELKYPVVLRPAYTMGGAGGGMVYNVDELKVVCERGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          D +               +            +P  +  ++ +  
Sbjct: 209 CIFGWEELELEVVRDADNNKITVCFIENIDPIGVHTGDSFCSAPMLTIPEDVQKELQEM- 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              ++   ++I   G     F  +P + ++  +EIN +   T  S     +   G+   
Sbjct: 268 ---SYRIIESIEVIGGCNCQFARNPETGRIVVIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 98/299 (32%), Gaps = 33/299 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL+  GF+   +         D D S  L    L  +   + +H      G++       
Sbjct: 581 ALKKLGFESIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLS-IHDKEKPLGVIAQFGGQT 639

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQH 122
                  L+   +    +      L+ D+   + ++   G+P+  S +       +   +
Sbjct: 640 PLNLASDLKKYGVNILGTTPETIDLAEDRDHFRAMMDKLGIPMPESGMAVNVDEALKIAN 699

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++  D+ + + +  +        +LI++++          
Sbjct: 700 RIGYPVMVRPSYVLGGRGMEIVHDDEMMKVYMSAAVGVTPDRPILIDRFL---HHATECE 756

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241
            DA  D     VP    +       S +S  +LP+    +     ++         +   
Sbjct: 757 ADAISDGKNCFVPAVMEHIELAGVHSGDSACILPSMNLTEKQVATIKDYTKKIAVEMNVC 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           G+    +        V+ LE N +   T     P ++     +  +L   ++  +   +
Sbjct: 817 GLMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCDINMVQLATQIITSSLTGK 869


>gi|332978288|gb|EGK15016.1| carbamoyl-phosphate synthase, large subunit [Psychrobacter sp.
           1501(2011)]
          Length = 1090

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVEQIIDKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A  ++ D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALDLDKNGVLKKYNVELIGASKDAIEMAEDRDLFDQAMKRIGLECPRAEI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +            +    +   QLLI++
Sbjct: 149 AETMEQAFEIQAKLGFPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KPD      
Sbjct: 590 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPDGVIVQF 649

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P           +
Sbjct: 650 GGQTPLKLARSLEAAGVNIIGTSPDAIDRAEDRERFQHMIHQLNLIQPPNALATSMEDGL 709

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L  +   ++   +L+++++D  IE+
Sbjct: 710 VKAKDVGYPLVVRPSYVLGGRAMEIVYNEEELKHYLRTAVQASNEAPVLLDRFLDDAIEV 769

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +  +I  E++       + 
Sbjct: 770 DVDCVSDGNEVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSEEICDEMRAQTIAMAKE 826

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 827 LGVVGLMNVQFAV--KDGTVYILEVNPRAART----VPFVSKCIGISLAQIAAR 874


>gi|313672969|ref|YP_004051080.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio
           nitroreducens DSM 19672]
 gi|312939725|gb|ADR18917.1| carbamoyl-phosphate synthase large subunit [Calditerrivibrio
           nitroreducens DSM 19672]
          Length = 1077

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVG------------LVLAHLKPDLAFN 56
           SG     AL++ G+KV  I         D + +               ++   +PD    
Sbjct: 29  SGTQALKALKEEGYKVVLINSNPATIMTDPEFADATYIEPLTVECAEKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----S 110
            + G         +     L        G    A+   + R     +   + +       
Sbjct: 89  TVGGQTALNLALDLHKHGVLDRYNVELIGAKVDAIKKAEDRELFKAAMYKIGLEMPKSAY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      MD+   I  P +I+P       G  V    +     L      +   ++L+E+
Sbjct: 149 VKSFEEGMDAIVNIGFPAIIRPSFTLGGTGGNVAYNMEEYKRYLEWGLEASPVGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SILGWKEYELEVMRDLKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQYMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIMREIGVDTGGSNVQFATDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 94/319 (29%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL + G++   I         D D S 
Sbjct: 563 VVILGGGPN-------RIGQGIEFDYCCVHACYALSEIGYETIMINCNPETVSTDYDTSD 615

Query: 43  GL------------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L            ++   KP        G       V      + I  T    +  A  
Sbjct: 616 RLYFEPLTKEHVLNIIDKEKPVGVIVQFGGQTPLKLSVPLEKAGVRILGTSPDSIDIAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P                 I  P V++P        + ++   +++
Sbjct: 676 RERFKKLVEKLGILQPNNGIARNPEEAFKIAEEIGYPVVVRPSYVLGGRAMEIVYDSEAL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   +    +LI++++D  IEL    + D    V    +   +           
Sbjct: 736 ANYMKFAVEASEKHPVLIDKFLDNAIELDVDAISDGETVVVAGIMQHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I  DI  +V ++       +   G+    F        ++ LE+N +   T
Sbjct: 793 SACSIPPRTISEDIKIKVIKITKQLAYELKVLGLMNIQFAI--KDNDIYILEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G    +L
Sbjct: 851 ----VPFVSKTIGVPLAKL 865


>gi|270263912|ref|ZP_06192180.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13]
 gi|270042105|gb|EFA15201.1| carbamoyl-phosphate synthase large chain [Serratia odorifera 4Rx13]
          Length = 1074

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVHRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|78358083|ref|YP_389532.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme-like
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
 gi|78220488|gb|ABB39837.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes-like
           protein [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 351

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 55/329 (16%), Positives = 92/329 (27%), Gaps = 44/329 (13%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
           L   +A   AL   G     + +   +    L +A L PD+ FN++    G+  +     
Sbjct: 22  LLQARAVHDALIRRGHAAELLSMTLDLHAASLRIAALNPDVVFNLVEELDGDIAMAPLAP 81

Query: 73  ELLEIPYTHSGI--------------LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            L                            L+   + +   V++ GV      L      
Sbjct: 82  ALFAHAGIPFTGADAASMTLSGSKLLCKQILTGADICTPAWVTADGVCGGMGDLPRTADA 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                     V +    G     IV        +  L      HG     EQYV+G E  
Sbjct: 142 FIPGRYLCKSVHEHASLGLDDSCIVDAVQTGDVMAALMRCRTRHGGTWFAEQYVEGREFN 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSY---------ELKYSSLNSTHVLPAKIPLDIYKEV-- 227
              + D +  V  +   + +F  Y                +S          D   E   
Sbjct: 202 IAAIADGNGGVHVLPCAEIEFRGYAPERPRIVGYAAKWHQDSFECSNTVRRFDFCAEDSA 261

Query: 228 -----QRLAFLAHQAIGCRGISRSDFLFDPLSRK-----VFWLEINVQPGMTPVSIFPEM 277
                + +     +A G  G +R DF                +++N  P + P +     
Sbjct: 262 LLELLRTVTVRCWRAFGLAGYARIDFRVKGDGSPQAPYIPCVIDVNSNPCIAPDAGLAAA 321

Query: 278 AAYAGYSFRELLLWMVEDAS------CLR 300
           A   G  +  L+  +V+ A       C R
Sbjct: 322 AEKGGMDYAGLVEGIVQAAVKEDHPPCRR 350


>gi|238795188|ref|ZP_04638775.1| Carbamoyl-phosphate synthase large chain [Yersinia intermedia ATCC
           29909]
 gi|238725475|gb|EEQ17042.1| Carbamoyl-phosphate synthase large chain [Yersinia intermedia ATCC
           29909]
          Length = 1077

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|134298153|ref|YP_001111649.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134050853|gb|ABO48824.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1074

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNV 57
           G     AL + G +V  +           D+            S+  ++A  KPD     
Sbjct: 30  GTQACKALREEGIRVVLVNSNPATIMTDADIADVVYVEPLTWQSIEKIIAKEKPDGLLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V    Q IL+   +    + +     + D+   R+  +     +P     
Sbjct: 90  LGGQTGLNMAVELAEQGILDKYGVTLLGTTLETIKRAEDRELFRATMLEIGEPIPESTIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  ++K ++ +     +    +  +Q+L+E+ 
Sbjct: 150 STLEECIEFANKIGYPLIVRPAYTLGGTGGGIVKDEKELTATCHRGLKMSMINQVLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +     +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDNADNCITICNMENIDPVGVHTGDSIVVAPSQTLADRE-YQMLRTAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKVAGGCNVQFALDPHSMEYIVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 82/271 (30%), Gaps = 17/271 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   I     V  ++   KP        G    +         ++I  T    + 
Sbjct: 608 DKLYFEPLTI---EDVMNIIEKEKPLGVIVQFGGQTAINLAGDLAEMGVKILGTPIEGID 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +A   +K                +             +  P +++P        + ++  
Sbjct: 665 AAEDREKFEKLLKGLGIPQTEGKTATNVEEAQKIAAELGFPVLVRPSYVLGGRAMEIVYN 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +   +    +L+++YV G E+    +GD         +   +       +
Sbjct: 725 EDQLLKYMSTAVQVSPKHPVLVDKYVRGKEVEVDAIGDGENIFIPGIMEHIERAG---VH 781

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263
           S  +     P  +     ++V        + +   G+    ++       VF LE+N   
Sbjct: 782 SGDSIAVYPPQSLNQQEMEQVVDYTLRIGKGLKICGLMNIQYVVGEEG--VFVLEVNPRA 839

Query: 264 --VQPGMTPVSIFPEMAAYA----GYSFREL 288
               P ++ V+  P + A      G S  ++
Sbjct: 840 SRTVPVLSKVTGVPMVQAATRCMLGNSLSDM 870


>gi|326576363|gb|EGE26272.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           O35E]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|326570906|gb|EGE20930.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC7]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|326563560|gb|EGE13819.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           12P80B1]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPSNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|326562018|gb|EGE12348.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           103P14B1]
 gi|326574513|gb|EGE24455.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           101P30B1]
 gi|326575899|gb|EGE25822.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           CO72]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|326559682|gb|EGE10093.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           46P47B1]
 gi|326560323|gb|EGE10711.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           7169]
 gi|326566358|gb|EGE16508.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC1]
 gi|326570168|gb|EGE20213.1| carbamoyl-phosphate synthase, large subunit [Moraxella catarrhalis
           BC8]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|296113339|ref|YP_003627277.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis
           RH4]
 gi|295921033|gb|ADG61384.1| carbamoyl-phosphate synthase large chain [Moraxella catarrhalis
           RH4]
          Length = 1078

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVEQIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L         +   A   + D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYGCELIGATKEAIEKAEDRELFDKAMKKIGLECPKAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AQSMDDAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNREEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEQPKGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++        +   P    +  +   +
Sbjct: 644 GGQTPLKLARSLEQAGVPIIGTSPDAIDRAEDRERFLQMINKLNLRQPNNSIVKSSEEGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L  +   +H   +L++ ++D  IE+
Sbjct: 704 REAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLRDAVQASHEAPVLLDHFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  DI  +++R      + 
Sbjct: 764 DVDCVSDGKEVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSDDIQDDMRRQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQFAI--KGETVYVLEVNPRASRT----VPFVSKCIGVSLAKVAAR 868


>gi|189425138|ref|YP_001952315.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ]
 gi|189421397|gb|ACD95795.1| carbamoyl-phosphate synthase, large subunit [Geobacter lovleyi SZ]
          Length = 1082

 Score = 69.5 bits (168), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPEILAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V      IL+   +    + + A   + D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVSVAEMGILDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLSVPKSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNRTEVMEVIKQVGFPAIIRPSFTLGGTGGGIAYNMEEYERMAMVGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 90/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A   P        G   
Sbjct: 594 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTQEDVLEIVAKENPVGVIVQFGGQTP 653

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +        +  + 
Sbjct: 654 LKLSVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLDLLQPANGTARSFEEAEEVANR 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + ++   +++   +  +   +    +L+++++D  IE+    +
Sbjct: 714 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILVDKFLDAAIEIDVDAL 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  + P  +  ++  EV+R   +    +   G
Sbjct: 774 CDGKQVVIGGIMEHIEEAGIHSG---DSACSLPPYSLSQELIAEVRRQTEIMALELNVIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +        ++ LE+N +   T     P ++   G    ++   +
Sbjct: 831 LMNVQYAV--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAARI 874


>gi|324012354|gb|EGB81573.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           60-1]
          Length = 616

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|320197524|gb|EFW72138.1| Carbamoyl-phosphate synthase large chain [Escherichia coli
           WV_060327]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|315293394|gb|EFU52746.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           153-1]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSARLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEVVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|300984136|ref|ZP_07176887.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           200-1]
 gi|300306761|gb|EFJ61281.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           200-1]
          Length = 617

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|300948636|ref|ZP_07162720.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           116-1]
 gi|300956962|ref|ZP_07169214.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           175-1]
 gi|301024778|ref|ZP_07188416.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           196-1]
 gi|331650924|ref|ZP_08351952.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718]
 gi|299880268|gb|EFI88479.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           196-1]
 gi|300316252|gb|EFJ66036.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           175-1]
 gi|300451862|gb|EFK15482.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           116-1]
 gi|323939747|gb|EGB35949.1| carbamoyl-phosphate synthase [Escherichia coli E482]
 gi|331051378|gb|EGI23427.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M718]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|331645139|ref|ZP_08346250.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605]
 gi|281177246|dbj|BAI53576.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE15]
 gi|330909882|gb|EGH38392.1| carbamoyl-phosphate synthase large chain [Escherichia coli AA86]
 gi|331045896|gb|EGI18015.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli M605]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|218687908|ref|YP_002396120.1| carbamoyl phosphate synthase large subunit [Escherichia coli ED1a]
 gi|218425472|emb|CAR06254.1| carbamoyl-phosphate synthase large subunit [Escherichia coli ED1a]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|215485194|ref|YP_002327625.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|306815369|ref|ZP_07449518.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101]
 gi|312966153|ref|ZP_07780379.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75]
 gi|331661071|ref|ZP_08362003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA206]
 gi|215263266|emb|CAS07581.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|305851031|gb|EFM51486.1| carbamoyl phosphate synthase large subunit [Escherichia coli NC101]
 gi|312289396|gb|EFR17290.1| carbamoyl-phosphate synthase large chain [Escherichia coli 2362-75]
 gi|323190287|gb|EFZ75563.1| carbamoyl-phosphate synthase large chain [Escherichia coli RN587/1]
 gi|324008377|gb|EGB77596.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           57-2]
 gi|331052113|gb|EGI24152.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA206]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|170768490|ref|ZP_02902943.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii
           TW07627]
 gi|170122594|gb|EDS91525.1| carbamoyl-phosphate synthase, large subunit [Escherichia albertii
           TW07627]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|91209092|ref|YP_539078.1| carbamoyl phosphate synthase large subunit [Escherichia coli UTI89]
 gi|117622323|ref|YP_851236.1| carbamoyl phosphate synthase large subunit [Escherichia coli APEC
           O1]
 gi|218556971|ref|YP_002389884.1| carbamoyl phosphate synthase large subunit [Escherichia coli S88]
 gi|237704175|ref|ZP_04534656.1| carbamoyl-phosphate synthase subunit large [Escherichia sp.
           3_2_53FAA]
 gi|91070666|gb|ABE05547.1| Carbamoyl-phosphate synthase large chain [Escherichia coli UTI89]
 gi|115511447|gb|ABI99521.1| carbamoyl-phosphate synthase large subunit [Escherichia coli APEC
           O1]
 gi|218363740|emb|CAR01400.1| carbamoyl-phosphate synthase large subunit [Escherichia coli S88]
 gi|226902087|gb|EEH88346.1| carbamoyl-phosphate synthase subunit large [Escherichia sp.
           3_2_53FAA]
 gi|294490354|gb|ADE89110.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           IHE3034]
 gi|307629605|gb|ADN73909.1| carbamoyl phosphate synthase large subunit [Escherichia coli UM146]
 gi|315285004|gb|EFU44449.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           110-3]
 gi|315298450|gb|EFU57705.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           16-3]
 gi|323950478|gb|EGB46356.1| carbamoyl-phosphate synthase [Escherichia coli H252]
 gi|323955229|gb|EGB51002.1| carbamoyl-phosphate synthase [Escherichia coli H263]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|26245956|ref|NP_751995.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           CFT073]
 gi|227885069|ref|ZP_04002874.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972]
 gi|300981005|ref|ZP_07175282.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           45-1]
 gi|301048415|ref|ZP_07195442.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           185-1]
 gi|33301028|sp|Q8FLB0|CARB_ECOL6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|26106353|gb|AAN78539.1|AE016755_39 Carbamoyl-phosphate synthase large chain [Escherichia coli CFT073]
 gi|222031865|emb|CAP74603.1| Carbamoyl-phosphate synthase large chain [Escherichia coli LF82]
 gi|227837898|gb|EEJ48364.1| carbamoyl phosphate synthase large subunit [Escherichia coli 83972]
 gi|300299708|gb|EFJ56093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           185-1]
 gi|300409041|gb|EFJ92579.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           45-1]
 gi|307551877|gb|ADN44652.1| carbamoyl phosphate synthase, large subunit [Escherichia coli ABU
           83972]
 gi|312944639|gb|ADR25466.1| carbamoyl phosphate synthase large subunit [Escherichia coli O83:H1
           str. NRG 857C]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEVVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|110640245|ref|YP_667973.1| carbamoyl phosphate synthase large subunit [Escherichia coli 536]
 gi|191174098|ref|ZP_03035612.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11]
 gi|110341837|gb|ABG68074.1| carbamoyl-phosphate synthase large chain [Escherichia coli 536]
 gi|190905592|gb|EDV65217.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli F11]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|157368959|ref|YP_001476948.1| carbamoyl phosphate synthase large subunit [Serratia proteamaculans
           568]
 gi|157320723|gb|ABV39820.1| carbamoyl-phosphate synthase, large subunit [Serratia
           proteamaculans 568]
          Length = 1074

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWKVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVQRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVQLAKVAAR 867


>gi|194446768|ref|YP_002039297.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194405431|gb|ACF65653.1| carbamoyl-phosphate synthase, large subunit [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
          Length = 1075

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILLNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|309792429|ref|ZP_07686895.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris
           trichoides DG6]
 gi|308225539|gb|EFO79301.1| carbamoyl-phosphate synthase, large subunit [Oscillochloris
           trichoides DG6]
          Length = 1076

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIAKERPDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+   +    + + A  ++ D+   K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAIDLHEAGVLQRYSVELIGASVNAVRVAEDRQLFKDKMLEIGLSVARSGT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +I+P       G  +    +     + +    +   Q+LIE+
Sbjct: 149 AHSLDEALTIVGETGFPAIIRPSFTLGGAGGGIAYNIEEFREIVERGLDASPVTQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +    +D   I     +     +      +          +  +   + 
Sbjct: 209 SVLGWKEFEMEVMRDRMDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYQQMRDQS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   +++ +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRAVGVETGGSNVQFAVNPHDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.033,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L D G++   +         D D              V  ++   +PD       G    
Sbjct: 593 LRDMGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNIVDVERPDGVLVQFGGQTPL 652

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T    +  A   D+  +         P   S         +   I
Sbjct: 653 KLARALEAAGVPIWGTPPDAIDLAEDRDRFGALLDRLGIPAPAHGSATSWEEARAAAEQI 712

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + ++  + S+   + ++ + +    +LI+++++       +  D
Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDETSLERYMREAVAASPEHPILIDRFLED---AFEMDVD 769

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDIYKEVQRLAFLAHQAIGCRGI 243
           A  D + + V             S +S  V+P  +   +  + ++R      + +G  G+
Sbjct: 770 AVSDGSSVIVAGIMEQIELAGVHSGDSACVIPTYMVAPEHVETLRRYTEQLARELGVVGL 829

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               +        V+ LE+N +   T     P +A   G
Sbjct: 830 MNIQYAM--KDDIVYVLEVNPRASRTT----PFVAKATG 862


>gi|291613525|ref|YP_003523682.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans
           lithotrophicus ES-1]
 gi|291583637|gb|ADE11295.1| carbamoyl-phosphate synthase, large subunit [Sideroxydans
           lithotrophicus ES-1]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + +            V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPNMADATYIEPITWQMVEKIIAKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A  ++ D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVEMIGASRDAIDMAEDREKFKQAMTRIGLASARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q ++  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQQVMGFPTIIRPSFTMGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFSINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 82/289 (28%), Gaps = 38/289 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+A  KP       
Sbjct: 577 VHAALAMREDGYETIMLNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPIGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T   ++  A    + ++     +   P   +       +
Sbjct: 637 GGQTPLKLAHGLAKNGVPIIGTTPDMIDMAEDRARFQAMLRELNLKQPPNRTASNVADGV 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE-----QYVD 173
                I  P V++P        + +I     +   +  +   +      +         D
Sbjct: 697 AGAAEIGYPLVMRPSNVLGGRAMEIIHAQSDLERYMRDAEEMSKTYPERMPILLDRFLND 756

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D    +    +   +       +S  ++  + P  +   +  E++R    
Sbjct: 757 AIEVDVDAVSDGKQVIIGGIMEHIEQAG---VHSGDSACSLPPYSLSAKLQDELRRQTVA 813

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
             +++   G+    F        V+ LE+N       P ++  +  P  
Sbjct: 814 MAKSLNVVGLMNVQFAI--QGETVYVLEVNPRASRTVPYVSKATSVPLA 860


>gi|261253796|ref|ZP_05946369.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP
           102891]
 gi|260937187|gb|EEX93176.1| carbamoyl-phosphate synthase large chain [Vibrio orientalis CIP
           102891]
          Length = 1076

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 91/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857


>gi|259907380|ref|YP_002647736.1| carbamoyl phosphate synthase large subunit [Erwinia pyrifoliae
           Ep1/96]
 gi|224963002|emb|CAX54485.1| Carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae
           Ep1/96]
 gi|283477213|emb|CAY73120.1| carbamoyl-phosphate synthase large chain [Erwinia pyrifoliae DSM
           12163]
          Length = 1084

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++   +
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIDMAVEKAAM 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   +++        +G RG
Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQNVMRQQVEKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867


>gi|188532866|ref|YP_001906663.1| carbamoyl phosphate synthase large subunit [Erwinia tasmaniensis
           Et1/99]
 gi|188027908|emb|CAO95765.1| Carbamoyl-phosphate synthase large chain [Erwinia tasmaniensis
           Et1/99]
          Length = 1074

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPENGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++   +
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLGLKQPANATVTAIEMAVEKAAI 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFNTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 765 DAICDGEQVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDVMREQVKKLAFELGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 867


>gi|89072560|ref|ZP_01159132.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp.
           SKA34]
 gi|89051664|gb|EAR57117.1| carbamoyl-phosphate synthase large subunit [Photobacterium sp.
           SKA34]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + ++ R  + + + G+      +
Sbjct: 89  TMGGQTALNCALDLEKYGVLEEFNVEMIGATADAIDKAENRSRFDKAMKAIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 ATTMEEAYKVLEMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGIDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCTIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVSTMEQAIEKSRD 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|269960252|ref|ZP_06174627.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3]
 gi|269835059|gb|EEZ89143.1| carbamoyl-phosphate synthase large subunit [Vibrio harveyi 1DA3]
          Length = 1077

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 44.5 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857


>gi|237748686|ref|ZP_04579166.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13]
 gi|229380048|gb|EEO30139.1| carbamoyl phosphate synthase [Oxalobacter formigenes OXCC13]
          Length = 1076

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        + V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTFIEPITWKVVERIIEQERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLYRNGVLEKYNVELIGASPEAIDKAEDRAKFKEAMTKIGLSSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D Q  +  P +I+P       G  +   ++       +    +  ++LLIE+
Sbjct: 149 AHTLEEAWDVQKQLGFPVIIRPSFTLGGTGGGIAYNEEEFETICRRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +    +D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRVDNCIIVCSIENLDPMGVHTGDSITVAPSQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 51/319 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + VL GG +         G+           A A+ + G++   +           D+  
Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDISD 608

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G       +      + I  T   ++ +A  
Sbjct: 609 RLYFEPLTLEDVLEIVDKEKPYGVIVQYGGQTPLKLALDLEANGVPIVGTSPDMIDAAED 668

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++    S+
Sbjct: 669 RERFQKLLKDLDLRQPPNRTARTEEEALKLAEEIGYPIVVRPSYVLGGRAMEIVHDQASL 728

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D IE+    + D         +   +       +S  
Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCLSDGERTFIGGVMEHIEQAG---VHSGD 785

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD--PLSRK----VFWLEIN 263
           ++  + P  +     +E++R   L  + +   G+    F      ++ K    V+ LE+N
Sbjct: 786 SACSLPPYSLSKATIEELKRQTTLMAKGLNVVGLMNVQFAIQHQEVNGKLQDVVYVLEVN 845

Query: 264 VQPGMTPVSIFPEMAAYAG 282
            +   T     P ++   G
Sbjct: 846 PRASRT----VPFVSKATG 860


>gi|304414251|ref|ZP_07395619.1| carbamoyl phosphate synthase large subunit [Candidatus Regiella
           insecticola LSR1]
 gi|304283465|gb|EFL91861.1| carbamoyl phosphate synthase large subunit [Candidatus Regiella
           insecticola LSR1]
          Length = 1083

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+      +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVAMIGATAAAIDKAEDRRLFDIAMKKIGLATARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVVAEVGFPCIIRPSFTMGGTGGGIAYNHEEFQEICQRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P+       G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPEGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    + SA      +          P   ++      +   ++
Sbjct: 652 LKLARELEAAGVPIIGTRPDAIDSAEDRGLFQQAVNDLGLKQPANATVTALEDAVAKANI 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + + ++   +L+++++D       V  
Sbjct: 712 LGYPLVVRPSYVLGGRAMEIVYDEVDLRCYFQSAVNVSNDAPVLLDRFLDD---AVEVDV 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA    + I   +++        +  RG
Sbjct: 769 DAICDGEKVLIGGIMEHIEQAGVHSGDSACSLPAYTLSENIQNTLRQQVEKLAFKLNVRG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ +E+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAVKDQD--VYLIEVNPRAART----VPFVSKATGVPLAKIAAR 871


>gi|327392679|dbj|BAK10101.1| carbamoyl-phosphate synthase large chain CarB [Pantoea ananatis
           AJ13355]
          Length = 1076

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     DI   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|291616228|ref|YP_003518970.1| CarB [Pantoea ananatis LMG 20103]
 gi|291151258|gb|ADD75842.1| CarB [Pantoea ananatis LMG 20103]
          Length = 1090

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 43  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 102

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    + S G+    S  
Sbjct: 103 TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 162

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 163 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 222

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 223 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 282

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 283 LAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 338

Query: 291 WM 292
            +
Sbjct: 339 KL 340



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 602 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 661

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 662 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLNLKQPANATVATLEQAVEKAAG 721

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 722 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 778

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     DI   +++        +  RG
Sbjct: 779 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQDIQNVMRQQVEKLAFELNVRG 838

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 839 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 881


>gi|146297226|ref|YP_001180997.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410802|gb|ABP67806.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1077

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 90/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   DK  +         P   S       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDIAEDRDKFLNLLKSLGIPYPQGGSAYNLEDAIKVAEQ 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   Q +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYNRQELERYIKAAMEISIKHPILIDKYIVGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALKVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     +L+   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGMLDKYNVKLLGTSLETIKKAEDRELFKKTMLEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHNVEEALEFAKEVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSQDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           A    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 AINIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|333011414|gb|EGK30828.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-272]
 gi|333021653|gb|EGK40902.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-227]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDVPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|332762592|gb|EGJ92857.1| carbamoyl-phosphate synthase large chain [Shigella flexneri
           4343-70]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|320173371|gb|EFW48573.1| Carbamoyl-phosphate synthase large chain [Shigella dysenteriae CDC
           74-1112]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|331681416|ref|ZP_08382053.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299]
 gi|331081637|gb|EGI52798.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H299]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|331671552|ref|ZP_08372350.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA280]
 gi|331071397|gb|EGI42754.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA280]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|331661399|ref|ZP_08362323.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA143]
 gi|331061314|gb|EGI33277.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA143]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|301330201|ref|ZP_07222861.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           78-1]
 gi|300843763|gb|EFK71523.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           78-1]
          Length = 618

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|301019783|ref|ZP_07183927.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           69-1]
 gi|300399070|gb|EFJ82608.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           69-1]
          Length = 623

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|300900947|ref|ZP_07119081.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           198-1]
 gi|300355574|gb|EFJ71444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           198-1]
          Length = 618

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|293408125|ref|ZP_06651965.1| carbamoyl-phosphate synthase [Escherichia coli B354]
 gi|291472376|gb|EFF14858.1| carbamoyl-phosphate synthase [Escherichia coli B354]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|284919814|emb|CBG32869.1| carbamoyl-phosphate synthase large chain [Escherichia coli 042]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDSSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|260866183|ref|YP_003232585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O111:H- str. 11128]
 gi|257762539|dbj|BAI34034.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O111:H- str. 11128]
 gi|323176339|gb|EFZ61931.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1180]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|254037449|ref|ZP_04871526.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43]
 gi|226840555|gb|EEH72557.1| carbamoyl-phosphate synthase large subunit [Escherichia sp. 1_1_43]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|218703293|ref|YP_002410812.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           UMN026]
 gi|293403106|ref|ZP_06647203.1| carB [Escherichia coli FVEC1412]
 gi|298378634|ref|ZP_06988518.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           FVEC1302]
 gi|218430390|emb|CAR11257.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           UMN026]
 gi|291430021|gb|EFF03035.1| carB [Escherichia coli FVEC1412]
 gi|298280968|gb|EFI22469.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           FVEC1302]
          Length = 1072

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 764 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|218698453|ref|YP_002406082.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI39]
 gi|218368439|emb|CAR16175.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI39]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|170021609|ref|YP_001726563.1| carbamoyl phosphate synthase large subunit [Escherichia coli ATCC
           8739]
 gi|301648401|ref|ZP_07248137.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           146-1]
 gi|307136636|ref|ZP_07495992.1| carbamoyl phosphate synthase large subunit [Escherichia coli H736]
 gi|331640482|ref|ZP_08341630.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736]
 gi|169756537|gb|ACA79236.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli ATCC
           8739]
 gi|301073536|gb|EFK88342.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           146-1]
 gi|309700246|emb|CBI99534.1| carbamoyl-phosphate synthase large chain [Escherichia coli ETEC
           H10407]
 gi|315616190|gb|EFU96809.1| carbamoyl-phosphate synthase large chain [Escherichia coli 3431]
 gi|323935085|gb|EGB31452.1| carbamoyl-phosphate synthase [Escherichia coli E1520]
 gi|331040228|gb|EGI12435.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H736]
 gi|332341364|gb|AEE54698.1| carbamoyl-phosphate synthase, large subunit CarB [Escherichia coli
           UMNK88]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|16128027|ref|NP_414574.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|89106917|ref|AP_000697.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. W3110]
 gi|170079696|ref|YP_001729016.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238899438|ref|YP_002925234.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BW2952]
 gi|312970126|ref|ZP_07784308.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70]
 gi|115627|sp|P00968|CARB_ECOLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|3318817|pdb|1JDB|B Chain B, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318821|pdb|1JDB|E Chain E, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318825|pdb|1JDB|H Chain H, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|3318829|pdb|1JDB|K Chain K, Carbamoyl Phosphate Synthetase From Escherichia Coli
 gi|4929935|pdb|1BXR|A Chain A, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929937|pdb|1BXR|C Chain C, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929939|pdb|1BXR|E Chain E, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|4929941|pdb|1BXR|G Chain G, Structure Of Carbamoyl Phosphate Synthetase Complexed With
           The Atp Analog Amppnp
 gi|6730116|pdb|1C30|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730118|pdb|1C30|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730120|pdb|1C30|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730122|pdb|1C30|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
           Subunit Mutation C269s
 gi|6730126|pdb|1C3O|A Chain A, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730128|pdb|1C3O|C Chain C, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730130|pdb|1C3O|E Chain E, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730132|pdb|1C3O|G Chain G, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
           Small Subunit Mutant C269s With Bound Glutamine
 gi|6730187|pdb|1CS0|A Chain A, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730189|pdb|1CS0|C Chain C, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730191|pdb|1CS0|E Chain E, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|6730193|pdb|1CS0|G Chain G, Crystal Structure Of Carbamoyl Phosphate Synthetase
           Complexed At Cys269 In The Small Subunit With The
           Tetrahedral Mimic L-Glutamate Gamma-Semialdehyde
 gi|18158903|pdb|1KEE|A Chain A, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158905|pdb|1KEE|C Chain C, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158907|pdb|1KEE|E Chain E, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|18158909|pdb|1KEE|G Chain G, Inactivation Of The Amidotransferase Activity Of Carbamoyl
           Phosphate Synthetase By The Antibiotic Acivicin
 gi|55669821|pdb|1T36|A Chain A, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669823|pdb|1T36|C Chain C, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669825|pdb|1T36|E Chain E, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|55669827|pdb|1T36|G Chain G, Crystal Structure Of E. Coli Carbamoyl Phosphate
           Synthetase Small Subunit Mutant C248d Complexed With
           Uridine 5'- Monophosphate
 gi|41079|emb|CAA24744.1| unnamed protein product [Escherichia coli K-12]
 gi|145464|gb|AAA23539.1| carbamoyl-phosphate synthetase subunit B [Escherichia coli]
 gi|1786216|gb|AAC73144.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. MG1655]
 gi|21321915|dbj|BAB96602.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K12 substr. W3110]
 gi|169887531|gb|ACB01238.1| carbamoyl-phosphate synthase large subunit [Escherichia coli str.
           K-12 substr. DH10B]
 gi|238860105|gb|ACR62103.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BW2952]
 gi|260450758|gb|ACX41180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli DH1]
 gi|310337624|gb|EFQ02735.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1827-70]
 gi|315134728|dbj|BAJ41887.1| carbamoyl phosphate synthase large subunit [Escherichia coli DH1]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|15799715|ref|NP_285727.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 EDL933]
 gi|15829290|ref|NP_308063.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|24111479|ref|NP_705989.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a
           str. 301]
 gi|30061601|ref|NP_835772.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 2a
           str. 2457T]
 gi|110804100|ref|YP_687620.1| carbamoyl phosphate synthase large subunit [Shigella flexneri 5
           str. 8401]
 gi|168751711|ref|ZP_02776733.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|168756859|ref|ZP_02781866.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|168762795|ref|ZP_02787802.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|168766723|ref|ZP_02791730.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|168776951|ref|ZP_02801958.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|168781732|ref|ZP_02806739.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|168785086|ref|ZP_02810093.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|168801916|ref|ZP_02826923.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|195937706|ref|ZP_03083088.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208806580|ref|ZP_03248917.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208812930|ref|ZP_03254259.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208818860|ref|ZP_03259180.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396701|ref|YP_002268640.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|217324642|ref|ZP_03440726.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254791169|ref|YP_003076006.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|256025350|ref|ZP_05439215.1| carbamoyl phosphate synthase large subunit [Escherichia sp.
           4_1_40B]
 gi|261226791|ref|ZP_05941072.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. FRIK2000]
 gi|261255194|ref|ZP_05947727.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. FRIK966]
 gi|291280856|ref|YP_003497674.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7
           str. CB9615]
 gi|293417908|ref|ZP_06660530.1| carbamoyl-phosphate synthase [Escherichia coli B185]
 gi|54036830|sp|P63738|CARB_SHIFL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|54040878|sp|P63737|CARB_ECO57 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12512719|gb|AAG54335.1|AE005180_2 carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. EDL933]
 gi|13359492|dbj|BAB33459.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|24050230|gb|AAN41696.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a
           str. 301]
 gi|30039843|gb|AAP15577.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 2a
           str. 2457T]
 gi|110613648|gb|ABF02315.1| carbamoyl-phosphate synthase large subunit [Shigella flexneri 5
           str. 8401]
 gi|187767704|gb|EDU31548.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4196]
 gi|188014318|gb|EDU52440.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4113]
 gi|189000773|gb|EDU69759.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4076]
 gi|189356056|gb|EDU74475.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4401]
 gi|189364139|gb|EDU82558.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4486]
 gi|189366979|gb|EDU85395.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4501]
 gi|189375070|gb|EDU93486.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC869]
 gi|189376018|gb|EDU94434.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC508]
 gi|208726381|gb|EDZ75982.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4206]
 gi|208734207|gb|EDZ82894.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4045]
 gi|208738983|gb|EDZ86665.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158101|gb|ACI35534.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. EC4115]
 gi|209748710|gb|ACI72662.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|209748712|gb|ACI72663.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|209748714|gb|ACI72664.1| carbamoyl-phosphate synthase large subunit [Escherichia coli]
 gi|217320863|gb|EEC29287.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           O157:H7 str. TW14588]
 gi|254590569|gb|ACT69930.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|281599394|gb|ADA72378.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri
           2002017]
 gi|290760729|gb|ADD54690.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O55:H7
           str. CB9615]
 gi|291430626|gb|EFF03624.1| carbamoyl-phosphate synthase [Escherichia coli B185]
 gi|313646591|gb|EFS11052.1| carbamoyl-phosphate synthase large chain [Shigella flexneri 2a str.
           2457T]
 gi|320190447|gb|EFW65097.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. EC1212]
 gi|320642073|gb|EFX11424.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|320658159|gb|EFX25888.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7
           str. 3256-97 TW 07815]
 gi|320663468|gb|EFX30752.1| carbamoyl phosphate synthase large subunit [Escherichia coli O55:H7
           str. USDA 5905]
 gi|320668780|gb|EFX35575.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|326345250|gb|EGD68993.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. 1125]
 gi|326346897|gb|EGD70631.1| Carbamoyl-phosphate synthase large chain [Escherichia coli O157:H7
           str. 1044]
 gi|332762315|gb|EGJ92582.1| carbamoyl-phosphate synthase large chain [Shigella flexneri
           2747-71]
 gi|332764874|gb|EGJ95102.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-671]
 gi|332768820|gb|EGJ98999.1| carB [Shigella flexneri 2930-71]
 gi|333009202|gb|EGK28658.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-218]
 gi|333010524|gb|EGK29957.1| carbamoyl-phosphate synthase large chain [Shigella flexneri VA-6]
 gi|333022398|gb|EGK41636.1| carbamoyl-phosphate synthase large chain [Shigella flexneri K-304]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|188493701|ref|ZP_03000971.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           53638]
 gi|188488900|gb|EDU64003.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           53638]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|187733854|ref|YP_001878857.1| carbamoyl phosphate synthase large subunit [Shigella boydii CDC
           3083-94]
 gi|187430846|gb|ACD10120.1| carbamoyl-phosphate synthase, large subunit [Shigella boydii CDC
           3083-94]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|74310651|ref|YP_309070.1| carbamoyl phosphate synthase large subunit [Shigella sonnei Ss046]
 gi|82542649|ref|YP_406596.1| carbamoyl phosphate synthase large subunit [Shigella boydii Sb227]
 gi|157159012|ref|YP_001461202.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           E24377A]
 gi|157159501|ref|YP_001456819.1| carbamoyl phosphate synthase large subunit [Escherichia coli HS]
 gi|191168899|ref|ZP_03030670.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A]
 gi|193066203|ref|ZP_03047256.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22]
 gi|193070991|ref|ZP_03051920.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E110019]
 gi|194429873|ref|ZP_03062385.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171]
 gi|194439699|ref|ZP_03071769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           101-1]
 gi|209917224|ref|YP_002291308.1| carbamoyl phosphate synthase large subunit [Escherichia coli SE11]
 gi|218552617|ref|YP_002385530.1| carbamoyl phosphate synthase large subunit [Escherichia coli IAI1]
 gi|218693504|ref|YP_002401171.1| carbamoyl phosphate synthase large subunit [Escherichia coli 55989]
 gi|253774934|ref|YP_003037765.1| carbamoyl phosphate synthase large subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254160159|ref|YP_003043267.1| carbamoyl phosphate synthase large subunit [Escherichia coli B str.
           REL606]
 gi|256020127|ref|ZP_05433992.1| carbamoyl phosphate synthase large subunit [Shigella sp. D9]
 gi|260842270|ref|YP_003220048.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|260853243|ref|YP_003227134.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|293476696|ref|ZP_06665104.1| carbamoyl-phosphate synthase [Escherichia coli B088]
 gi|300816067|ref|ZP_07096290.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           107-1]
 gi|300821963|ref|ZP_07102107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           119-7]
 gi|300905435|ref|ZP_07123202.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           84-1]
 gi|300919583|ref|ZP_07136075.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           115-1]
 gi|300924019|ref|ZP_07140019.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           182-1]
 gi|300928670|ref|ZP_07144189.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           187-1]
 gi|301305077|ref|ZP_07211178.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           124-1]
 gi|307311514|ref|ZP_07591156.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W]
 gi|309797799|ref|ZP_07692183.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           145-7]
 gi|331666266|ref|ZP_08367147.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA271]
 gi|331680603|ref|ZP_08381262.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591]
 gi|332281281|ref|ZP_08393694.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9]
 gi|73854128|gb|AAZ86835.1| carbamoyl-phosphate synthase large subunit [Shigella sonnei Ss046]
 gi|81244060|gb|ABB64768.1| carbamoyl-phosphate synthase large subunit [Shigella boydii Sb227]
 gi|157065181|gb|ABV04436.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli HS]
 gi|157081042|gb|ABV20750.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E24377A]
 gi|190901065|gb|EDV60843.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B7A]
 gi|192926128|gb|EDV80769.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli E22]
 gi|192955721|gb|EDV86195.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           E110019]
 gi|194412092|gb|EDX28402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli B171]
 gi|194421384|gb|EDX37401.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           101-1]
 gi|209910483|dbj|BAG75557.1| carbamoyl-phosphate synthase large subunit [Escherichia coli SE11]
 gi|218350236|emb|CAU95919.1| carbamoyl-phosphate synthase large subunit [Escherichia coli 55989]
 gi|218359385|emb|CAQ96924.1| carbamoyl-phosphate synthase large subunit [Escherichia coli IAI1]
 gi|242375873|emb|CAQ30553.1| carB, subunit of carbamoyl phosphate synthetase [Escherichia coli
           BL21(DE3)]
 gi|253325978|gb|ACT30580.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253972060|gb|ACT37731.1| carbamoyl-phosphate synthase large subunit [Escherichia coli B str.
           REL606]
 gi|253976269|gb|ACT41939.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           BL21(DE3)]
 gi|257751892|dbj|BAI23394.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O26:H11 str. 11368]
 gi|257757417|dbj|BAI28914.1| carbamoyl-phosphate synthase large subunit [Escherichia coli
           O103:H2 str. 12009]
 gi|291321149|gb|EFE60591.1| carbamoyl-phosphate synthase [Escherichia coli B088]
 gi|300402713|gb|EFJ86251.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           84-1]
 gi|300413329|gb|EFJ96639.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           115-1]
 gi|300419743|gb|EFK03054.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           182-1]
 gi|300463339|gb|EFK26832.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           187-1]
 gi|300525563|gb|EFK46632.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           119-7]
 gi|300531274|gb|EFK52336.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           107-1]
 gi|300839684|gb|EFK67444.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           124-1]
 gi|306908493|gb|EFN38991.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli W]
 gi|308118628|gb|EFO55890.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           145-7]
 gi|315059258|gb|ADT73585.1| carbamoyl-phosphate synthase large subunit [Escherichia coli W]
 gi|315255693|gb|EFU35661.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           85-1]
 gi|320186145|gb|EFW60887.1| Carbamoyl-phosphate synthase large chain [Shigella flexneri CDC
           796-83]
 gi|320200450|gb|EFW75036.1| Carbamoyl-phosphate synthase large chain [Escherichia coli EC4100B]
 gi|323157908|gb|EFZ44011.1| carbamoyl-phosphate synthase large chain [Escherichia coli EPECa14]
 gi|323160049|gb|EFZ46012.1| carbamoyl-phosphate synthase large chain [Escherichia coli E128010]
 gi|323166081|gb|EFZ51860.1| carbamoyl-phosphate synthase large chain [Shigella sonnei 53G]
 gi|323171452|gb|EFZ57099.1| carbamoyl-phosphate synthase large chain [Escherichia coli LT-68]
 gi|323181729|gb|EFZ67142.1| carbamoyl-phosphate synthase large chain [Escherichia coli 1357]
 gi|323380185|gb|ADX52453.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli KO11]
 gi|323945770|gb|EGB41817.1| carbamoyl-phosphate synthase [Escherichia coli H120]
 gi|323959981|gb|EGB55627.1| carbamoyl-phosphate synthase [Escherichia coli H489]
 gi|323970706|gb|EGB65960.1| carbamoyl-phosphate synthase [Escherichia coli TA007]
 gi|324017700|gb|EGB86919.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           117-3]
 gi|331066477|gb|EGI38354.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli
           TA271]
 gi|331072066|gb|EGI43402.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli H591]
 gi|332090537|gb|EGI95635.1| carbamoyl-phosphate synthase large chain [Shigella boydii 3594-74]
 gi|332103633|gb|EGJ06979.1| carbamoyl-phosphate synthase large subunit [Shigella sp. D9]
          Length = 1073

 Score = 69.1 bits (167), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|238758985|ref|ZP_04620156.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC
           35236]
 gi|238702796|gb|EEP95342.1| Carbamoyl-phosphate synthase large chain [Yersinia aldovae ATCC
           35236]
          Length = 1077

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|87121706|ref|ZP_01077593.1| carbamoylphosphate synthetase large subunit [Marinomonas sp.
           MED121]
 gi|86162957|gb|EAQ64235.1| carbamoylphosphate synthetase large subunit [Marinomonas sp.
           MED121]
          Length = 1071

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGLRVILVNSNPATIMTDPAMADSTYIEPIEWKTVAKIIEKERPDAVLP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          +         +E+    +  +  A   ++            P    
Sbjct: 89  TMGGQTALNCALDLERHGVLAEFDVEMIGATADAIDKAEDRNRFDQAMKAIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHNMEEAYGVQREVGFPCIIRPSFTMGGTGGGIAYNTEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGMDPKTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 100/319 (31%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + +L GG +         G+           A AL D GF+   +         D D   
Sbjct: 561 VVILGGGPN-------RIGQGIEFDYCCVHAALALRDNGFETIMVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G            E + I  T    +  A  
Sbjct: 614 RLYFEPVTLEDVLEIVRKEKPKGVIVQFGGQTPLKIARALEAEGVPIIGTSPEAIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +S         P   ++      +     I  P V++P        + ++  +  +
Sbjct: 674 RERFQSMIQRLGYKQPNNATVRSTDQALIKAAEIGFPLVVRPSYVLGGRAMEIVYNESEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L++ +++  IE+    + D    V    +   +       +S  
Sbjct: 734 TRYMTTAVKVSNDSPVLLDHFLNAAIEIDIDCISDGKQVVIGGIMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +      +++ +       +G  G+  +         +++ +E+N +   T
Sbjct: 791 SACALPPHSLTQAQQDDIREMIAKMALELGVIGLMNTQLAI--QDGEIYVIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G S  ++
Sbjct: 849 ----VPFVSKCIGRSLAQV 863


>gi|257454666|ref|ZP_05619922.1| carbamoyl-phosphate synthase, large subunit [Enhydrobacter
           aerosaccus SK60]
 gi|257447976|gb|EEV22963.1| carbamoyl-phosphate synthase, large subunit [Enhydrobacter
           aerosaccus SK60]
          Length = 1081

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQTVERIIDKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R+    +   + +       
Sbjct: 89  TMGGQTALNCALDLDKHGVLEKYGCELIGATKDAIEKAEDRNLFDQAMKKIGLECPRAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +            +    +   QLLI++
Sbjct: 149 AETMEQAFAIQAKVGFPCIIRPSFTMGGSGGGIAYNRDEFVEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGIDPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP+      
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPEGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P           +
Sbjct: 644 GGQTPLKLARALEAAGVHIIGTSPDAIDRAEDRERFQHMIQQLGFTQPPNALATSTEDGI 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L+++++D  IE+
Sbjct: 704 VKATQVGYPLVVRPSYVLGGRAMEIVYNENELRRYLREAVQASNEAPVLLDRFLDDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +  +I   ++       + 
Sbjct: 764 DVDCISDGTNVVIGGIMQHIEQAG---VHSGDSACSIPPYSLSQEICDVMREQTVAMAKE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    +        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 821 LGVVGLMNVQYAV--KDGVVYILEVNPRASRT----VPFVSKCIGTSLAQVAAR 868


>gi|227892685|ref|ZP_04010490.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047]
 gi|227865462|gb|EEJ72883.1| carbamoyl-phosphate synthase [Lactobacillus ultunensis DSM 16047]
          Length = 1062

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 34/293 (11%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   I+ +                       V  V    KP+       G
Sbjct: 577 CVKALQKMGYEAIVINSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A   +             P   +   +   +++
Sbjct: 637 QTSINLAAGLEKHGIKILGTKVKDVNRAEDRELFDEIIKKLHLNQPQGLTATTHEGVLEA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++     +   L           +L++ Y+DG E    
Sbjct: 697 ADKLGYPVLVRPSYVLGGKAMEIVYNKSELEEYLHDHVDIAADHPILVDDYLDGRECDVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     ++ +++  +       + C
Sbjct: 757 AICDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQTFSDEVKEKITDVTRKLALTLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 814 IGIMNIQFIV--RNGEVYVIEVNPRASRT----VPFLSKITDIEMAQVATRVI 860



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTTIADKVYIEPLTVESISRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQVGLNMAMELAKTGILDELHIELLGTKLDSIEQAEDREKFKELCKKLGEPVPPSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   + LIE+
Sbjct: 149 VNTVEDALAFGDEIGYPIIVRPAFTMGGTGGGICNNREELAEIAKNGLELSPVTECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDHDDNAMIVCCMENFDPVGIHTGDSIVFSPSQTLSDKEYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRLIRALKIEGGCNVQLALDPNSFNYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|298373329|ref|ZP_06983318.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral
           taxon 274 str. F0058]
 gi|298274381|gb|EFI15933.1| carbamoyl-phosphate synthase, large subunit [Bacteroidetes oral
           taxon 274 str. F0058]
          Length = 1065

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 36/265 (13%), Positives = 82/265 (30%), Gaps = 11/265 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   KPD     L G    +         ++I  T    + 
Sbjct: 607 DKLYFEPLTV---EDVMNIIDLEKPDGVIVTLGGQTAINLAEPLHKLGVKIIGTDVEAID 663

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A + D             P   ++            I  P +++P        + ++  
Sbjct: 664 RAENRDSFEKVMNTLGIPQPKGLAVTNIPDGCRVAQDIGYPVLVRPSFVLGGRAMKIVNN 723

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++S+   L  +   N    +L+++Y+ G EL    + D         +   +        
Sbjct: 724 EESLKKYLQTAVEINVNQPVLVDKYISGKELEVDAICDGRDVFIPGIMEHVERTGIHSG- 782

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              + +      +   +  ++   +      IG  G+    F+ D     VF +E+N + 
Sbjct: 783 --DSISVYPTFSVSQKVKDKIIDYSVRLGLEIGIIGLFNIQFIADTNDD-VFVIEVNPRS 839

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P ++   G    ++   
Sbjct: 840 SRT----VPFLSKATGVDMADIATR 860



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V                   + ++      V  ++   +PD     
Sbjct: 29  GTQACLALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 88

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ     ILE  ++    +   +  ++ D+   +         V      
Sbjct: 89  LGGQTGLNLAVQLAKKGILEECDVEILGTSFQSIEMAEDRELFKELCKSLGEPVLPSKIA 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 + +   I  P V++P       G    + +      +  + + +   Q+L+E+ 
Sbjct: 149 NSMEEGLAAAAEIGYPVVLRPAFTLGGTGGGFAEDEAEFCELMRNALALSPVHQVLVEKS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T IA+   +       ++  +        +    ++ ++  A
Sbjct: 209 IKG-FKEIEYEVIRDKNDTAIAICNMENIDPVGVHTGDSMVVCPSQTLTNKEFQLLRDSA 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DPLS   + +E+N  P ++  S     +  +GY    +   
Sbjct: 268 LKIIRALKIEGGCNVQFALDPLSFNYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 323

Query: 292 M 292
           +
Sbjct: 324 I 324


>gi|330829113|ref|YP_004392065.1| carbamoyl-phosphate synthase, large subunit [Aeromonas veronii
           B565]
 gi|328804249|gb|AEB49448.1| Carbamoyl-phosphate synthase, large subunit [Aeromonas veronii
           B565]
          Length = 1074

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITWEVVREIIKKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMRSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q ++  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAWGVQQMVGFPCIIRPSFTMGGSGGGIAYNTEEFVEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +S         P   ++      +     
Sbjct: 647 LKLARALEANGVPIIGTSPDAIDRAEDRERFQSAVERLGLKQPENGTVTALEQAVLLAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I+ P V++P        + ++  +Q +     ++ S ++   +L+++++D   EL    +
Sbjct: 707 ITYPLVVRPSYVLGGRAMEIVYDEQDLRRYFAEAVSVSNESPVLLDRFLDDATELDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           +   + P  +   I  E++         +G  G
Sbjct: 767 CDGTDVVIGGIMEHIEQAGIHSG---DSGCSLPPYTLSKKIQDEIREQVRKLALELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KGDDIYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|238797496|ref|ZP_04640994.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC
           43969]
 gi|238718637|gb|EEQ10455.1| Carbamoyl-phosphate synthase large chain [Yersinia mollaretii ATCC
           43969]
          Length = 1077

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIDQAVEKATG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|238782678|ref|ZP_04626708.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC
           43970]
 gi|238716338|gb|EEQ08320.1| Carbamoyl-phosphate synthase large chain [Yersinia bercovieri ATCC
           43970]
          Length = 1077

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|148976820|ref|ZP_01813492.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|148976985|ref|ZP_01813631.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|148977459|ref|ZP_01814048.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963254|gb|EDK28520.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963645|gb|EDK28906.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
 gi|145963933|gb|EDK29192.1| D-alanine-D-alanine ligase family protein [Vibrionales bacterium
           SWAT-3]
          Length = 384

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 56/341 (16%), Positives = 120/341 (35%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFKVSQI---DVDRSVG 43
           +AV+ GG   E++ S         S           A+AL ++ F+  ++   D+  ++ 
Sbjct: 20  IAVIHGGD-KEQDGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDI--NLA 76

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
             L     DL      G  G D +    + LE+L +PY     + + +  +K   K  + 
Sbjct: 77  QCLKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIK 136

Query: 102 SCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + G+P  P I +                  +      +++KP+ G +S+ +  +     +
Sbjct: 137 AAGLPTAPFITIGIDEHFEDAAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFNRNDL 196

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-------------GVMGDASLDVTEIAVPKS 197
              +++      G+ ++IE ++ G E                              V  +
Sbjct: 197 -AGVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQFEMPMAFSITERVLDA 255

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           D   +        +   L A     +  ++  +    ++ +G + + R D   D     +
Sbjct: 256 DEPIFTSMDVKPITQDRLVAVNEEGLRNQLALIGQKIYRQLGLQTLVRVDLRMDKEGN-L 314

Query: 258 FWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
           + LE N +P +       VS+     A  G  + +L+  +V
Sbjct: 315 YVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355


>gi|90580537|ref|ZP_01236342.1| carbamoyl-phosphate synthase large subunit [Vibrio angustum S14]
 gi|90438195|gb|EAS63381.1| carbamoyl-phosphate synthase large subunit [Photobacterium angustum
           S14]
          Length = 1072

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLERHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAIEKSRD 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|325123192|gb|ADY82715.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 1076

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866


>gi|307824611|ref|ZP_07654835.1| carbamoyl-phosphate synthase, large subunit [Methylobacter
           tundripaludum SV96]
 gi|307734265|gb|EFO05118.1| carbamoyl-phosphate synthase, large subunit [Methylobacter
           tundripaludum SV96]
          Length = 1072

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIDWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G        D     +LE   +    +   A   + D+             V    +
Sbjct: 89  TMGGQTALNCALDLDANGVLEKYGVEMIGATKEAINKAEDRELFNQAMRKIGYEVAKSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALAAQQEVGYPTVIRPSFTMGGSGGGIAYNKEEFVEICERGLYLSPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S      +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQVAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 102/289 (35%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   I         D D S  L    L  +    ++H            G   
Sbjct: 587 ALREDGYETIMINCNPETVSTDFDTSDRLYFESLTLEDVLEIVHIEQPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   +       +++   
Sbjct: 647 LKLARALEAAGVPIIGTSPDSIDLAEDRERFQKLLERLNLKQPPNATARSVEQAINAAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +  P V++P        + ++  ++ +   + ++ S ++   +L+++++D  +E+    +
Sbjct: 707 LGYPLVVRPSYVLGGRAMEIVFNEEGLQRYMKEAVSVSNDSPVLLDRFLDDAVEMDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P ++  ++  +++       +A+G  G
Sbjct: 767 YDGEQVLIGGLMEHIEQAG---VHSGDSACSLPPYELAPELQDKLREQVTKMAEALGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F        ++ LE+N +   T     P ++   GY+  ++   
Sbjct: 824 LMNTQFAIQGED--IYVLEVNPRASRTA----PFVSKATGYALAKIAAR 866


>gi|293609984|ref|ZP_06692286.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292828436|gb|EFF86799.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 1076

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGATKDAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866


>gi|157870774|ref|XP_001683937.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127004|emb|CAJ05423.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 1118

 Score = 69.1 bits (167), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            +ID  R+V  ++   K D+ FN+  G   E      ++E LE          S      
Sbjct: 603 KKIDSYRTVRKLVTSSKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 662

Query: 94  MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
               +++       VP    +            +  P ++K L G +S+GI    +  ++
Sbjct: 663 KIDMKLMVGSSGVKVPNFVLLSNAESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 722

Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                         +  L+E+++ G E T     D              F   +      
Sbjct: 723 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 782

Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +     Y              +         +   G  R DF  D L+ + +
Sbjct: 783 YFEKKWTMECGDQAYGFLASSDPAYTAITEMARNAFKYIMNGVGYGRVDFRIDELTGEPY 842

Query: 259 WLEINVQPGM 268
           +LEIN   GM
Sbjct: 843 FLEINPNCGM 852


>gi|54307802|ref|YP_128822.1| carbamoyl phosphate synthase large subunit [Photobacterium
           profundum SS9]
 gi|46912225|emb|CAG19020.1| putative carbamoylphosphate synthase large subunit [Photobacterium
           profundum SS9]
          Length = 1077

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALELEKRGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++   +
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMELAIEKSRI 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMREQVKKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|22095481|sp|O27077|CARB_METTH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1060

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L + G +   ++ + +                     V  ++   KPD    
Sbjct: 29  SGSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKIIQKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          LE + +  +    + +    D   S     +  VP   ++ 
Sbjct: 89  TMGGQTGLNVATGLAEMGALEGVRVIGSSIETIRNVEDRDLFDSFMKKLNEPVPAARAVS 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +++P       G  V      +     +    +  +Q+LI+Q V
Sbjct: 149 SVEEALEAVEEIGYPVIVRPAFTLGGTGGGVAHSRDELIEIATRGLEMSFINQVLIDQSV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I +   +       ++  +        +  +  + ++  A 
Sbjct: 209 LGWKEFEYEVMRDRNDTCIIVLCNMENIDPMGIHTGESVVVAPAQTLSDEDNQRLRDAAI 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+   G     F   P + +   +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 KIIRALKIEGGCNIQFAVHPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKIAAKI 324


>gi|148652642|ref|YP_001279735.1| carbamoyl-phosphate synthase large subunit [Psychrobacter sp.
           PRwf-1]
 gi|148571726|gb|ABQ93785.1| carbamoyl-phosphate synthase large subunit [Psychrobacter sp.
           PRwf-1]
          Length = 1086

 Score = 68.7 bits (166), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPVMADATYIEPITWQTVEQIIDKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A  ++ D+    Q +   G+      +
Sbjct: 89  TMGGQTALNCALDLDRNGVLEKYNVELIGATKDAIEMAEDRELFDQAMKRIGLECPRAET 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +            +    +   QLLI++
Sbjct: 149 AESMEEAFEIQAKLGFPCIIRPSFTMGGSGGGIAYNRDEFIEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENVDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVNPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP+      
Sbjct: 590 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPEGVIVQF 649

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P           +
Sbjct: 650 GGQTPLKLARALEAAGVNIIGTSPDAIDRAEDRERFQHMIQQLNLIQPPNALATSMEDGL 709

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L  +   ++   +L+++++D  IE+
Sbjct: 710 MKASSVGYPLVVRPSYVLGGRAMEIVYNEEELKHYLRTAVQASNEAPVLLDRFLDDAIEV 769

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  ++  + P  +  +I  E++       + 
Sbjct: 770 DVDCVSDGNEVVIGGIMQHIEQAG---VHSGDSACSLPPYSLSDEICDEMRAQTVAMAKE 826

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 827 LGVVGLMNVQFAV--KDGTVYILEVNPRAART----VPFVSKCIGKSLAQVAAR 874


>gi|257791419|ref|YP_003182025.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM
           2243]
 gi|257475316|gb|ACV55636.1| carbamoyl-phosphate synthase, large subunit [Eggerthella lenta DSM
           2243]
          Length = 1078

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAKLGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +F +  +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLTDVEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/266 (10%), Positives = 81/266 (30%), Gaps = 11/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   +PD     L G              + I  T    + 
Sbjct: 614 DKLYFEPLTF---EDVMDIVDVEQPDGVVVTLGGQTPLKLANALAAAGVPIMGTSPEAID 670

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+  +         P        +        I  P +++P       G+ ++  
Sbjct: 671 LAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADRIGFPLLVRPSYVLGGRGMGIVYD 730

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   + +++  +    + ++++++G  +   +      +   +     +       +
Sbjct: 731 GAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDALCDGEQVFVGG-VLEHIEMAGIH 788

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++    P  +   +  +++ +A      +G  G+    F      + ++ +E N + 
Sbjct: 789 SGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGLINIQFAI--KDQVIYIIEANPRA 846

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P  +   G    ++   +
Sbjct: 847 SRT----VPFTSKATGVPLAKVAARI 868


>gi|2116977|dbj|BAA20124.1| D-alanine ligase [Clostridium perfringens]
          Length = 45

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 24/37 (64%)

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + LE+N  PGMT  S+FP+ AA    SF ELL  ++E
Sbjct: 1   YVLEVNTLPGMTKNSLFPKSAAGINMSFEELLDTIIE 37


>gi|213861714|ref|ZP_03386184.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp.
          enterica serovar Typhi str. M223]
          Length = 75

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 13/44 (29%), Positives = 23/44 (52%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGL 44
          + ++  G S+E EVSL S K    A++ + F V  + +D+    
Sbjct: 6  VGIVFSGKSAEHEVSLQSAKNIVDAIDKSRFDVVLLGIDKQGQW 49


>gi|197334608|ref|YP_002155229.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri MJ11]
 gi|197316098|gb|ACH65545.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri MJ11]
          Length = 1076

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMDEAYQVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      +D    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLELLQPENATVTTMEQAIDKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I   ++         +G RG
Sbjct: 767 CDGEQVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       KV+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|50122791|ref|YP_051958.1| carbamoyl phosphate synthase large subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49613317|emb|CAG76768.1| carbamoyl-phosphate synthase large chain [Pectobacterium
           atrosepticum SCRI1043]
          Length = 1074

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERKGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADLGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQHAVNRLGLKQPSNATVATIEQAVEKARG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|319936915|ref|ZP_08011326.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
 gi|319808014|gb|EFW04589.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
          Length = 1065

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  I+        D+ +                ++   KPD     
Sbjct: 30  GTQACRALKEEGVEVVLINSNPATIMTDKDIADKVYIEPLTLPVVKNLIKKEKPDSILPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           L G    +  +    +  L+   +    +      L+ D++  K ++ +   P   SI  
Sbjct: 90  LGGQNALNIAMALADEGFLKKHHVETIGTSTRTIKLAEDRLEFKTLMETINEPCAASIVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   ++ +          +  +Q LIE+ 
Sbjct: 150 NHVDDAIVFADKIGYPVVVRPAYTLGGTGGGIAANEKELHDICSNGLRLSRVNQCLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITICNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           F    A+  +G     +  +P S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 FNIITALDIQGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 98/294 (33%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+ AG++   +         D D              V  ++   KPD A     G
Sbjct: 578 CVWALKAAGYETIIVNNNPETVSTDFDIADRLYFEPLTPEDVESIIDIEKPDGAIVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                     +   ++I  T +  + +A   ++            P   ++      +++
Sbjct: 638 QTAIQLTKALMEMGVKILGTSAADVDAAEDRERFDEILEKCGIDRPKGSTVFTIEEAIET 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   D  +   +   +       +LI++Y+ G E+   
Sbjct: 698 AQRLGYPVLVRPSYVLGGAGMEIALNDGDVKKFMGIINRQYQEHPILIDKYLAGKEVEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S  V P +    +I + +        +A+ 
Sbjct: 758 AICDENGILI----PGIMEHVERAGVHSGDSISVYPTQKIKSEIKEIIVDYTKRLAEALH 813

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G+    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 814 VIGLINIQFIV--YEDQVYVIEVNPRSSRT----IPYISKVTDIPVVDIATHVI 861


>gi|189219943|ref|YP_001940583.1| carbamoylphosphate synthase large subunit [Methylacidiphilum
           infernorum V4]
 gi|189186801|gb|ACD83986.1| Carbamoylphosphate synthase large subunit [Methylacidiphilum
           infernorum V4]
          Length = 1098

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D + S            +  ++   KPD    
Sbjct: 43  SGVQACKALKEDGYRVILINSNPATIMTDPEFSDKTYIEPITADILEKIIKEEKPDALLP 102

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V    + IL+ L I    + I A   + D+   K+ +   G+ +  S  
Sbjct: 103 TLGGQTALNMGVELAQRGILDALGIEMLGAKIEAIKKAEDRQLFKEEMIKVGLDIPRSGI 162

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  +   P +I+P       G  +    +     +++    +   ++LIE
Sbjct: 163 ARNMEEAREVAAQINQFPLIIRPAFTLGGQGGSIAYNREEFEAGVIRGLGVSPIGEILIE 222

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +     +      +          +  +    
Sbjct: 223 EGLLGWKEFEMEVMRDRKDSCVVICSIENMDPMGVHTGDSITVAPAQTLTDEEYQRMRDW 282

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  Q     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 283 AFTVIRQIGVETGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIA 338

Query: 290 LWM 292
             +
Sbjct: 339 AKL 341



 Score = 43.3 bits (100), Expect = 0.046,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 63/173 (36%), Gaps = 8/173 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   + ++        +L++ +++   +   
Sbjct: 717 AKKIGFPLLLRPSYVLGGRAMHIVYTESDLVRFVEEAIEAAPEKPILVDHFLE-DAIEVD 775

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +   +  +         +       +S  ++  + P  +  +I +E++R  FL  + +  
Sbjct: 776 IDCVSDGEDIF-IGAILEHIELAGVHSGDSACVLPPFSLSENIKEEIRRTVFLLARELNV 834

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F        ++ LE+N +   T     P ++   G    +L   ++
Sbjct: 835 VGLMNVQFAV--QKNNLYVLEVNPRASRT----VPFISKSIGVPLAKLAAQVI 881


>gi|325831454|ref|ZP_08164708.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1]
 gi|325486708|gb|EGC89156.1| carbamoyl-phosphate synthase, large subunit [Eggerthella sp. HGA1]
          Length = 1078

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +F +  +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLTDVEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 88/289 (30%), Gaps = 29/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AGF+   +         D D              V  ++   +PD     L G   
Sbjct: 588 ALHEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVEQPDGVVVTLGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   D+  +         P        +        
Sbjct: 648 LKLANALAAPGVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADR 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++     +   + +++  +    + ++++++G  +   +  
Sbjct: 708 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDA 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +   +     +       +S  ++    P  +   +  +++ +A      +G  G+
Sbjct: 767 LCDGEQVFVGG-VLEHIEMAGIHSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F      + ++ +E N +   T     P  +   G    ++   +
Sbjct: 826 INIQFAI--KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868


>gi|238918633|ref|YP_002932147.1| carbamoyl phosphate synthase large subunit [Edwardsiella ictaluri
           93-146]
 gi|238868201|gb|ACR67912.1| carbamoyl-phosphate synthase, large subunit, putative [Edwardsiella
           ictaluri 93-146]
          Length = 1073

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R  Q +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P S ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKSGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVERPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQKAVNRLGLKQPANATVTAIEQAVEKGAQ 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  E++R A      +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNQVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|303247248|ref|ZP_07333522.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           fructosovorans JJ]
 gi|302491407|gb|EFL51295.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           fructosovorans JJ]
          Length = 1079

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++ +                      SV  ++A  KPD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYVEPIEPASVARIIAREKPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG----VPVCPS 110
            L G         +     L E      G     +   + R     +       +P    
Sbjct: 89  TLGGQTGLNTAVALAESGVLAEHGVELIGASLDVIKKAESRELFREAMENIGLTIPQSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I+ P +++P       G  V    + +     +  + +   ++++E+
Sbjct: 149 CHTMDDVREWGKKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISARGLAASMKSEIMLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +   +      +  K     
Sbjct: 209 SVLGWKEFELELMRDRADNCVIICSIENIDPMGVHTGDSATVAPIQTLTDEEYQKMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 84/268 (31%), Gaps = 13/268 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVLNIIESEKPEGVIVQFGGQTPLNLAVPLLDAGVRILGTSPDSID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +   +      P   +             I  P V++P        + ++  
Sbjct: 675 RAEDRERFQELLIKLGLRQPANGTAFTVDEAAAIADKIGYPVVVRPSYVLGGRAMEIVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +      +   +    +LI+++ V+  E+    + D +       +   +       
Sbjct: 735 RGDLENYFKVAVVASGKHPILIDKFLVNATEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +  ++  E++R      + +G  G+    F        ++ LE+N +
Sbjct: 795 ---DSACVLPPHSLSPELVAEIERQTVALAKELGVIGLMNIQFAV--KDGDIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              T     P ++   G    +L   ++
Sbjct: 850 ASRTS----PFVSKATGVPLPKLATQVI 873


>gi|317046861|ref|YP_004114509.1| carbamoyl-phosphate synthase large subunit [Pantoea sp. At-9b]
 gi|316948478|gb|ADU67953.1| carbamoyl-phosphate synthase, large subunit [Pantoea sp. At-9b]
          Length = 1074

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKSIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFSVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +      +   P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVERLNLKQPANATVSTLEQAVEKAVG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLNAEIQDVMRQQVEKLAFELNVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|238897353|ref|YP_002923030.1| carbamoyl phosphate synthase, large subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465108|gb|ACQ66882.1| carbamoyl phosphate synthase, large subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 1074

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A   PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPDIADATYIEPIHWELVRKIIAKEHPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+    + +   G+    S  
Sbjct: 89  TMGGQTALNCALELEKKGVLSDYGVTMIGATGEAIDKAEDRRLFDKAMKKIGLNTPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 VHSMEEAFSVVSEIGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGFDLSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +  +     
Sbjct: 209 SLIGWKEYEMEVIRDKNDNCIIVCSIENMDAMGIHTGDSITVAPAQTLTDKEYQRMRHAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP S ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSVLREIGVETGGSNVQFAVDPKSGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 88/286 (30%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +           D+             V  ++   +P        G   
Sbjct: 588 ALHEAGYQTIMVNCNPETVSTDYDISDRLYFESVTLEDVLEIVRIEQPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +      ++ +          P   +            L
Sbjct: 648 LRLARELEAAGVIILGTSPDAIDRVEDRERFQQAVHRLGLKQPENATAQTLEDAFLKADL 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + +I     +      +   ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIIYNRVDLQRYFQNAVQVSNDSPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  E    S +S   LPA    + I K ++         +G +G
Sbjct: 765 DAICDGEHVFIGGIMEHIEEAGVHSGDSACSLPAYTLNEPIQKCMRDQVTKLAFELGVKG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F       +++ +E+N +   T     P ++   G    ++
Sbjct: 825 LMNVQFAV--KKEQLYLIEVNPRAART----VPFVSKATGIPLAKI 864


>gi|148979738|ref|ZP_01815675.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium
           SWAT-3]
 gi|145961621|gb|EDK26920.1| carbamoyl-phosphate synthase large subunit [Vibrionales bacterium
           SWAT-3]
          Length = 1076

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.024,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857


>gi|118474214|ref|YP_891521.1| carbamoyl phosphate synthase large subunit [Campylobacter fetus
           subsp. fetus 82-40]
 gi|118413440|gb|ABK81860.1| carbamoyl-phosphate synthase, large subunit [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 1084

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D D             S+  ++     D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPDFADATYIEPITKESISRIIKKENVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +        ++L  ++    +   +         +   +     +P      
Sbjct: 89  TMGGQVALNVAMELHEASMLGNVKFLGANPAAIKKGEDRVAFKEAMLKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +I+        G  V                 +  +++LIE+ +
Sbjct: 149 NMEEAMVAAGDIGFPLIIRASYTLGGAGSGVAYNIDEFRDLAEAGIDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEFEMEVIRDKNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQHMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   +PD    ++H            L ++      +      ++ D
Sbjct: 616 FEPIDF-EHLRAVIEAEQPDGI--IVHFGGQTPLKFSKRLTMIGAKIIGTSARVIDVAED 672

Query: 93  KMRSKQVVSSCGV--PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + +S  GV  P   +       +    +I  P +++P        +  +  +  +
Sbjct: 673 RKKFSEFISKIGVKQPQNDTATSESEAVQKAAVIGYPVLVRPSYVLGGRAMRRVHSESEL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D  EL    + D         +   +           
Sbjct: 733 KEYMSEAVKVSNHSPVLLDKFLQDATELDVDAISDGKNVYIGAIMEHIEEAGIHSG---D 789

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +++ + P  +  +I  +V+         +G  G+    F       +++ +E+N +   T
Sbjct: 790 SASILPPQNLSKEIINQVEICTKDIALNLGVVGLMNIQFAV--YQNELYIIEVNPRASRT 847

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 848 ----VPFVSKATGIPMAKVATR 865


>gi|255068592|ref|ZP_05320447.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC
           29256]
 gi|255047150|gb|EET42614.1| carbamoyl-phosphate synthase, large subunit [Neisseria sicca ATCC
           29256]
          Length = 1071

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        +++  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTMEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 96/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQVVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|194434563|ref|ZP_03066821.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae
           1012]
 gi|194417216|gb|EDX33327.1| carbamoyl-phosphate synthase, large subunit [Shigella dysenteriae
           1012]
 gi|320179591|gb|EFW54540.1| Carbamoyl-phosphate synthase large chain [Shigella boydii ATCC
           9905]
 gi|332095318|gb|EGJ00341.1| carbamoyl-phosphate synthase large chain [Shigella boydii 5216-82]
 gi|332097825|gb|EGJ02798.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           155-74]
          Length = 1073

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +  + +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|157414575|ref|YP_001481831.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni 81116]
 gi|157385539|gb|ABV51854.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni 81116]
          Length = 1089

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   +     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIMVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|82775435|ref|YP_401782.1| carbamoyl phosphate synthase large subunit [Shigella dysenteriae
           Sd197]
 gi|309787312|ref|ZP_07681924.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           1617]
 gi|81239583|gb|ABB60293.1| carbamoyl-phosphate synthase large subunit [Shigella dysenteriae
           Sd197]
 gi|308924890|gb|EFP70385.1| carbamoyl-phosphate synthase large chain [Shigella dysenteriae
           1617]
          Length = 1073

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +        A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGVTADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +  + +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLALSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|169349445|ref|ZP_02866383.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552]
 gi|169293520|gb|EDS75653.1| hypothetical protein CLOSPI_00163 [Clostridium spiroforme DSM 1552]
          Length = 1072

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 112/304 (36%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV        + +  ++   +PD    
Sbjct: 29  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNLKRLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +   +      L+   +      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQSALNLCSELNQAGILDKYNVEVLGVHVDAIERGEDRLEFKKAMNELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +  +Q LIE+
Sbjct: 149 AETVEEALAIADKLGYPVVVRPAYTMGGAGGGLVYNVEELKTIVSRGLQASLVNQCLIEE 208

Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G E     V+ DA+ ++  +   ++          S  S  +L   I  ++   ++ 
Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            AF   ++IG  G +   F  DP+S ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAFRIVESIGVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T    +  A   D            +P     +     ++    
Sbjct: 641 LNLAAQLKENGVNILGTTPETIDMAEDRDLFNEMMEKLEIPMPESGMAVDVEEALNIAKR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDDESLKQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + VP    +       S +S  +LP   I +   + ++       + +  RG
Sbjct: 758 DAISDGENVFVPAVMEHIELAGIHSGDSACILPSKHISIRHLETIKEYTKKIAKEMNVRG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       KV+ LE N +   T     P ++     +  ++   ++
Sbjct: 818 LMNMQYAI--ADNKVYVLEANPRASRT----VPLVSKVCNINMVKIATDII 862


>gi|323142839|ref|ZP_08077551.1| carbamoyl-phosphate synthase, large subunit [Succinatimonas hippei
           YIT 12066]
 gi|322417381|gb|EFY08003.1| carbamoyl-phosphate synthase, large subunit [Succinatimonas hippei
           YIT 12066]
          Length = 1076

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D +            R V  ++A  +PD    
Sbjct: 29  SGTQACRALRQEGYRVILVNSNPATIMTDPNIADATYIEPIHWRVVEKIIAKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +       + ++ R    +   G+    +  
Sbjct: 89  TMGGQTALNCALDLERHGVLAKYNVEMIGANADTIDKAENRERFDAAMKKIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEAWEVQEKVGFPCIIRPSFTMGGTGGGIAYNPEEFEDICTKGLESSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPDNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 90/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +           D+             V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDISDRLYFEPVTFEDVLEIARVEKPVGVIVQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A    + +          P   +       ++    
Sbjct: 647 LKLARKLEAAGVPIIGTSPDAIDRAEDRQRFQEAVQRLKLLQPENGTATSLNQAVNIASK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + V+  ++ +     ++   ++   +L+++++D   E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEVVYDEEDLRRYFAEAVKVSNKAPVLLDKFLDHATEIDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S   S  + P  +  ++  E+ R++      +  RG
Sbjct: 767 CDGKKVIIGGIMEHVEECG---VHSGDASCVLPPWHLSQEVIDEISRISRELAMELDVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +            K++ +E+N +   T     P ++   G    ++   +
Sbjct: 824 LMNVQLAVRE--DKIYLIEVNPRAART----VPFVSKATGLPLAKIAARI 867


>gi|294788331|ref|ZP_06753574.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri
           ATCC 29453]
 gi|294483762|gb|EFG31446.1| carbamoyl-phosphate synthase, large subunit [Simonsiella muelleri
           ATCC 29453]
          Length = 1074

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLRKYNVELIGASEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPANGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 40/296 (13%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL ++GF+   +         D D              V  ++    P     ++H    
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRKENPWGV--IVHYGGQ 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
               +   L    +    +   +   + D+ R ++V++  G+   P+             
Sbjct: 640 TPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRTARAEDEALRLA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCG 180
             I  P V++P        + V+   + +   + ++   +    +L++ +  + IE+   
Sbjct: 700 EEIGYPLVVRPSYVLGGRAMQVVHSPEQLQTYMREAVQVSEDSPVLLDFFLNNAIEVDVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +           +   + P  + ++   E++R       A+  
Sbjct: 760 CVSDGEEVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSIETQDEIRRQTKAMAFALNV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
           +G+    F        VF LE+N       P ++  +  P     A   AG S +E
Sbjct: 817 KGLMNVQFAV--QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLKE 870


>gi|264679350|ref|YP_003279257.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           CNB-2]
 gi|299532309|ref|ZP_07045702.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           S44]
 gi|262209863|gb|ACY33961.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           CNB-2]
 gi|298719717|gb|EFI60681.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           S44]
          Length = 1083

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+  ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWKNGVLDKYKVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKQMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A A+ + G++   +         D D   
Sbjct: 563 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 615

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   +P+       G       +    E ++I  T   ++ +A  
Sbjct: 616 RLYFEPLTLEDVLEIVDVEQPEGVIVQYGGQTPLKLALGLEREGVKIIGTTPDMIDAAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       ++    +  P V++P        + ++ + + +
Sbjct: 676 RERFQKLLNELGLRQPPNATARTEAEALEKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++   ++   +L++ ++    + C V                +       +S  +
Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLSN-AIECDVDCVRDKTGAVYIGGVMEHIEQAGVHSGDS 794

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268
           +  + P  +  +   E++R      + +   G+    F       +  ++ LE+N +   
Sbjct: 795 ACSLPPYYLKAETVAEIKRQTAAMAEGLHVVGLMNVQFAIKEADGQDVIYVLEVNPRASR 854

Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291
           T     P ++   G    ++   
Sbjct: 855 T----VPFVSKATGVQLAKVAAR 873


>gi|221066103|ref|ZP_03542208.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           KF-1]
 gi|220711126|gb|EED66494.1| carbamoyl-phosphate synthase, large subunit [Comamonas testosteroni
           KF-1]
          Length = 1083

 Score = 68.7 bits (166), Expect = 9e-10,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+  ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWKNGVLDKYKVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKQMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A A+ + G++   +         D D   
Sbjct: 563 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 615

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   +P+       G       +    E ++I  T   ++ +A  
Sbjct: 616 RLYFEPLTLEDVLEIVDVEQPEGVIVQYGGQTPLKLALGLEREGVKIIGTTPDMIDAAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       ++    +  P V++P        + ++ + + +
Sbjct: 676 RERFQKLLNELGLRQPPNATARTEAEALEKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++   ++   +L++ ++    + C V                +       +S  +
Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLSN-AIECDVDCVRDKTGAVYIGGVMEHIEQAGVHSGDS 794

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGM 268
           +  + P  +  +   E++R      + +   G+    F       +  ++ LE+N +   
Sbjct: 795 ACSLPPYYLKAETVAEIKRQTAAMAEGLHVVGLMNVQFAIKEADGQDVIYVLEVNPRASR 854

Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291
           T     P ++   G    ++   
Sbjct: 855 T----VPFVSKATGVQLAKVAAR 873


>gi|311032895|ref|ZP_07710985.1| arginine specific carbamoyl-phosphate synthase large chain
           [Bacillus sp. m3-13]
          Length = 1074

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 50/307 (16%), Positives = 105/307 (34%), Gaps = 38/307 (12%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  +         DVD             S+  ++   KPD     
Sbjct: 30  GTQACLALKEEGIEVVLVNNNPATIMTDVDIADHVYMEPLTVESLEKIIEKEKPDGIIGT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    + +V+     IL+   +    + + +     D+   R+  +  +  +P    +
Sbjct: 90  LGGQTALNLIVELSGKDILKKHNVSVLGTSVHSIQQGEDRELFRTLMMELNEPIPESQIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  MD    I  P +++P       G      DQ + + L +    +  +Q+L+E+ 
Sbjct: 150 HSIKEGMDFVKKIGYPIIVRPAYTLGGEGGGFAYNDQELHMLLKKGLHLSPINQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IKGW-KEVEYEVMRDENDTCIIVCNMENFDPVGVHTGDSIVVAPSQTLSDRQYQILRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     F  DP S   + +E+N  P ++  S     +   GY     +  
Sbjct: 269 LKIIRNLKIVGGCNIQFAMDPNSDNYYIIEVN--PRVSRSS--ALASKATGYP----IAR 320

Query: 292 MVEDASC 298
           +   A C
Sbjct: 321 I--AAKC 325



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 81/292 (27%), Gaps = 31/292 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+ AGF+   ++ +                       +  ++   K DL F 
Sbjct: 577 SVHAV-KALKKAGFETIVVNNNPETVSTDFSVADKLYFEPITIEDIVPIIQKEKVDLIFI 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +       E   I  T    +          +              +  +  
Sbjct: 636 QFGGQTAINLAEGLKEEGAIIAGTSIESIDKLEDRSHFYALLESEGIPHIEGKIVEQSSQ 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P +++P        +  I  D  I   L           LL+++YV G+E
Sbjct: 696 LKAEAQALGYPVLVRPSYVIGGQSMYTIYDDGEINSFLDIHQHNESLWPLLVDRYVPGLE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V+ D             +        S      +  +    +   E  +      Q
Sbjct: 756 CELDVISDGEQIYIPAIFEHIEKAGVHSGDSLAVLPSISLSTQMKERLVEYTKKICNTAQ 815

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            I   GI+   F+ +  +  ++ LE+N +   T     P ++        EL
Sbjct: 816 II---GIANIQFVINRDN--IYVLEVNPRASRT----VPIVSKVTDVPMIEL 858


>gi|302799302|ref|XP_002981410.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii]
 gi|300150950|gb|EFJ17598.1| hypothetical protein SELMODRAFT_420859 [Selaginella moellendorffii]
          Length = 1194

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  V+A  +PD    
Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D+   +Q +   GV   PS +
Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + +   P +I+P       G  +    + +        + +   Q+L+E
Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKAGLTASITSQVLVE 302

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +   +
Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 362

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 363 AIAIIREIGVECGGSNVQFAINPEDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 418

Query: 290 LWM 292
             +
Sbjct: 419 AKL 421



 Score = 37.2 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IEL 177
              +  P V++P        + ++  +  +   L  +   + G  +L+++Y+     I++
Sbjct: 811 AKRVGFPVVVRPSYVLGGRAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDV 870

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            C   G+  + +  I         +    +    T  +PA     I            + 
Sbjct: 871 DCLADGNGGVVIGGIMEHIEQAGVHSGDSACSIPTQTIPAVALATIRD----ATTKLAKK 926

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           +   G+    F     S +V+ +E N +   T     P ++   G+    +  L+
Sbjct: 927 LNVCGLMNCQFAIT-QSGEVYIIEANPRASRT----VPFVSKAIGHPLAKYAALV 976


>gi|269137952|ref|YP_003294652.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda
           EIB202]
 gi|267983612|gb|ACY83441.1| carbamoylphosphate synthase large subunit [Edwardsiella tarda
           EIB202]
 gi|304558000|gb|ADM40664.1| Carbamoyl-phosphate synthase large chain [Edwardsiella tarda
           FL6-60]
          Length = 1073

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +   Q +L    +    +   A   + D+ R  Q +   G+    S +
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDQAMKKIGLDTARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +    ++     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSLEESLAVAEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAVERPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIEQAVEKGAQ 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  E++R A      +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSAEIQDELRRQAEKLAMELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNQVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|317490562|ref|ZP_07949038.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA]
 gi|316910342|gb|EFV31975.1| carbamoyl-phosphate synthase [Eggerthella sp. 1_3_56FAA]
          Length = 1078

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITVEFVEQVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            L G  G +  V+     IL    +      + A     D+ +  + ++  G+       
Sbjct: 89  TLGGQTGLNTAVELARAGILAKYGVEMIGCDLEAIERGEDRKQFNECMAELGIETSRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSIADAEDIVAELGYPVVLRPSFTLGGAGGGIAHDAAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +F +  +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPENGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 87/289 (30%), Gaps = 29/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AGF+   +         D D              V  ++   +PD       G   
Sbjct: 588 ALHEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVEQPDGVVVTFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   D+  +         P        +        
Sbjct: 648 LKLANALAAAGVPIMGTSPEAIDLAEDRDRFAAVLDELGIVYPAAGMASTYQEACVVADR 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++     +   + +++  +    + ++++++G  +   +  
Sbjct: 708 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG-AVEVDLDA 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +   +     +       +S  ++    P  +   +  +++ +A      +G  G+
Sbjct: 767 LCDGEQVFVGG-VLEHIEMAGIHSGDSACCTPPFALSEAVQAQLRAIARRLALRLGVVGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F      + ++ +E N +   T     P  +   G    ++   +
Sbjct: 826 INIQFAI--KDQVIYIIEANPRASRT----VPFASKATGVPLAKVAARI 868


>gi|331082143|ref|ZP_08331271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330405738|gb|EGG85268.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 1072

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVERLTEIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G       E+     +L+   +      + A +   D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P VI+P       G  ++  ++ +     +  + +  +Q+L+E+
Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E    V         +I++   +       ++  +        I  D+   +++ 
Sbjct: 209 SVIGWE-ELEVEVVRDKTGKKISICFIENIDPMGVHTGDSFCSAPMLTISQDLQDRLEKQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    ++IG  G +   F  DP S ++  +EIN +   T  S     +   G+   
Sbjct: 268 AHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 41.4 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 33/295 (11%)

Query: 22  CASA--LEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVL 58
             +A  L + GF+   +         D D S  L                 KP       
Sbjct: 576 VHAAFTLRELGFETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVMSIYNKEKPLGIIVQF 635

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +   +       I  T   ++  A   D   +        +P     +     +
Sbjct: 636 GGQTPLNIAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEAL 695

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  H I  P +++P       G+ V+  D  +   +  +        +L+++++   +  
Sbjct: 696 EIAHRIGYPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFL---QNA 752

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQA 237
                DA  D T   VP    +  +    S +S  V+P+    +  KE +++        
Sbjct: 753 LECETDAISDGTHAFVPTVMQHIEQAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACE 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G  G+    +       KV+ LE N +   T     P ++     +   +   +
Sbjct: 813 MGVVGLMNMQYAICE--DKVYVLEANPRASRT----VPLVSKVCNINMANIATKL 861


>gi|134300074|ref|YP_001113570.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052774|gb|ABO50745.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1079

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 100/296 (33%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ +                     +S+  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYQIVLVNSNPATIMTDPGIADATYVEPLNVKSLTEIIVKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +   +      L    +      I A     D++  K+ +S  G+ +  S  
Sbjct: 89  NLGGQTALNLCSELNQSGILNQYGVKVIGVQIDAIERGEDRIAFKETMSRLGIEMPRSQA 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P       G  ++   + +     +  + +   Q+L+E+
Sbjct: 149 AYSVEEAEKIAQELGYPVVIRPAYTMGGTGGGLVYNVEELRTIANRGIASSMVGQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S +         +  +    ++  +        I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDA-VGVHTGDSFCAAPMLTISQELQQRLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+   
Sbjct: 268 SYAVVEAIEVIGGTNVQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 85/290 (29%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   +         D D              V  +    KP        G   
Sbjct: 580 ALKELGYETVMVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIYQKEKPLGVIVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   D+  S        +P     +     +D    
Sbjct: 640 LNIARELEQAGVKILGTSQETIDLAEDRDRFNSMMQKLGIPMPESGMAVNIEEAIDISKK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  +  +   +  +        +L+++++ G  +      
Sbjct: 700 IGYPLMVRPSYVLGGRGMEIVHDEDMLRRYMAAAVGVTPERPILVDRFL-GHAIEAEADA 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +      +         Y   +S  ++  + P  I  +    +        + +   G+
Sbjct: 759 ISDGKDAFVPTVMEH-IEYAGVHSGDSACVIPPVSISEEHLNTIVDYTKKIAKEMQVVGL 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +       +V+ LE N +   T     P ++         +   ++
Sbjct: 818 MNMQYAI--ADDRVYVLEANPRASRT----VPLVSKVCNIPMARIATEII 861


>gi|254491827|ref|ZP_05105006.1| carbamoyl-phosphate synthase, large subunit [Methylophaga
           thiooxidans DMS010]
 gi|224463305|gb|EEF79575.1| carbamoyl-phosphate synthase, large subunit [Methylophaga
           thiooxydans DMS010]
          Length = 1072

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +            ++V  V+   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPNMADATYIEPVNWQAVSKVIEAERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     ILE   +    +   A   + D+   +  +   G+ +  S  
Sbjct: 89  TMGGQTALNCALDLEKHGILEKFGVEMIGADSEAINKAEDRDLFRAAMRKIGLDMPKSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    Q       +    +   +LLIE+
Sbjct: 149 AHTLDEALEVQGQFGFPVIIRPSFTMGGSGGGIAYNKQDFIEICQRGLYLSPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SIIGWKEYEMEVVRDRKDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P S ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPESGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDLEKPKGVIVQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P           +     
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDHAEDRERFQQMVDKLNLLQPPNRLAHSADTAVALASE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNEDELQRYMQNAVKVSNDSPVLLDRFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   I  +++         +G +G
Sbjct: 767 CDGKEVLIGGIMEHIEQAG---VHSGDSACAIPPYSLSNAIQDKLREQVRQMALELGVKG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAI--KGDEIYILEVNPRASRT----VPYISKSIGVPLAKVAAR 866


>gi|90416146|ref|ZP_01224078.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90331871|gb|EAS47085.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 1072

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                     R+V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPVEWRTVEHIIAQEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYGVEMIGANADAIDKAEDRERFDKAMKAIGLDTPNSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P VI+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAIQVSDRFGFPCVIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRKDNCIIICAIENLDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IKVLREIGVETGGSNVQFAVNPEDGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLFFEPVTLEDVLEIVRIEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   +       +
Sbjct: 642 GGQTPLKLARALEAAGVPIVGTTPDAIDRAEDRERFQQMIQKLGLLQPQNATARSADQAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
           +    I  P V++P        + ++ K+  +   +  +   +    +L++ ++   IE+
Sbjct: 702 ELAKEIGYPLVVRPSYVLGGRAMEIVYKEDELRHYMKTAVQVSDDSPVLLDFFLPNAIEM 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  DI  E++ +       
Sbjct: 762 DVDAVSDGEQVVIGAIMQHIEQAGIHSG---DSACSLPPYSLGEDIQNEMREVCKKMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G RG+             ++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVRGLMNVQLAL--QDGLIYVIEVNPRASRT----VPFVSKCIGTSLAKIAAR 866


>gi|205356067|ref|ZP_03222835.1| carbamoyl phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346191|gb|EDZ32826.1| carbamoyl phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 1095

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 35  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 94

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 95  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 154

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +    ++   I     +     +      +          +          
Sbjct: 215 LGWKEYEMEVIRDRVNNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 274

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 275 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 87/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 625 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 681

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +++     +     I  P +++P        + V+  +  +
Sbjct: 682 RKKFAEFITKLGINQPKNSTVISVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 742 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 798

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 799 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 856

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 857 ----VPFVSKATGIPLAKVATR 874


>gi|149190314|ref|ZP_01868587.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1]
 gi|148835803|gb|EDL52767.1| carbamoyl-phosphate synthase large subunit [Vibrio shilonii AK1]
          Length = 1074

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DALCDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDTMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + KV+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNKVYLIEVNPRAART----VPFVSKATG 857


>gi|258404458|ref|YP_003197200.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium
           retbaense DSM 5692]
 gi|257796685|gb|ACV67622.1| carbamoyl-phosphate synthase, large subunit [Desulfohalobium
           retbaense DSM 5692]
          Length = 1078

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 101/302 (33%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                      SV  ++A  +PD    
Sbjct: 29  SGTQALKALKEEGYEVVLINSNPATIMTDPGLADRTYVEPLEPESVAKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +LE   +    + +     +  + + +  + + G+ V  S +
Sbjct: 89  TLGGQTGLNTAVSVAESGVLEKYGVELIGASLEVIQKAESRRQFRTAMENIGLTVPQSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +  + +S P +++P       G  V    + +     Q  + +   ++++E+
Sbjct: 149 ASSLEEVREWTNTLSFPMIVRPAFTLGGTGGGVAYNREDLEEIARQGLAASPSHEVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +  +  +      +          +  K     
Sbjct: 209 SVLGWKEYELEVMRDKHDNCVIICSIENLDAMGVHTGDSVTVAPAQTLTDREFQKMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAVNPENGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/250 (13%), Positives = 84/250 (33%), Gaps = 10/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   +P+       G    +  V  +   + I  T    +  A   ++  +   
Sbjct: 628 EDVLNIIEQEQPEGVIVQFGGQTPLNLAVPLLRAGVPILGTTPDSIDRAEDRERFHALLN 687

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P           +D    I  P V++P        + ++     +      +  
Sbjct: 688 KLGLKQPDNGLATSEEGALDVAERIGYPVVVRPSYVLGGRAMEIVYDSDELKNYFRDAVV 747

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    +LI++++ G +E+    + D +       +   +       +S  ++  + P  
Sbjct: 748 ASPDHPILIDKFLQGAVEIDVDALCDGTQTYVGGVMEHIEEAG---VHSGDSACVLPPHT 804

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +   E++R +    + +G  G+    F     + ++F LE+N +   T     P ++
Sbjct: 805 VSQETIDEIRRQSSALAEELGVVGLMNVQFAV--QNGEIFILEVNPRASRT----VPFVS 858

Query: 279 AYAGYSFREL 288
              G    +L
Sbjct: 859 KATGVPLAKL 868


>gi|326317399|ref|YP_004235071.1| carbamoyl-phosphate synthase large subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323374235|gb|ADX46504.1| carbamoyl-phosphate synthase, large subunit [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 1086

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L   ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQRSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 92/299 (30%), Gaps = 34/299 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPTGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALGLEAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 704 EKAATLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +         +       +S  ++  + P  +      E++R      + +
Sbjct: 763 CDVDCLRDPEGKVFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTAAMAEGL 822

Query: 239 GCRGISRSDFLFDPLSRK------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F              ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 SVVGLMNVQFAIQEREENGAKQDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 877


>gi|262278056|ref|ZP_06055841.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           calcoaceticus RUH2202]
 gi|262258407|gb|EEY77140.1| carbamoyl-phosphate synthase large subunit [Acinetobacter
           calcoaceticus RUH2202]
          Length = 1076

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L    +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLAKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALTIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDVYILEVNPRASRT----VPFVSKCIGDSLAKVAAR 866


>gi|325686169|gb|EGD28219.1| carbamoyl-phosphate synthase [Lactobacillus delbrueckii subsp.
           lactis DSM 20072]
          Length = 1066

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 108/337 (32%), Gaps = 59/337 (17%)

Query: 4   LMGGISSEREV-------------S--LSSGKAC---------ASALEDAGFKVSQI--- 36
           + GG   E E+             S  +  G+             AL++AG++   +   
Sbjct: 539 IYGG---EHEIQPDRSKKKVIVFGSGPIRIGQGIEFDYCCVHSVWALKEAGYETIIVNNN 595

Query: 37  ------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                 D D              V  ++   +PD A     G          +   + I 
Sbjct: 596 PETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTAIKLSQDLMKMGVPIL 655

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            T +  + +A   ++            P   ++      + + + +  P +++P      
Sbjct: 656 GTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVLVRPSYVLGG 715

Query: 139 LGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G+ +   D  +   +             +LI++Y+ G E     + D    +    +  
Sbjct: 716 AGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEGILIPGIMEH 775

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +       +S  + +   P KI  ++ + +   +    +A+  +G+    F+      K
Sbjct: 776 VERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQFIV--YENK 830

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 VYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863



 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNV 57
           G     AL + G +V  I         D D +  + +               KPD     
Sbjct: 30  GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLMEKEKPDALLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           + G    +  +    +  LE   +    +      ++ D++  K ++      V     +
Sbjct: 90  MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   +Q +          +   + LIEQ 
Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLRLSRVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+  +G     F  +P S     +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIITALNIKGGCNVQFALNPDSFDYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|261823075|ref|YP_003261181.1| carbamoyl phosphate synthase large subunit [Pectobacterium wasabiae
           WPP163]
 gi|261607088|gb|ACX89574.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           wasabiae WPP163]
          Length = 1074

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLKRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|227114250|ref|ZP_03827906.1| carbamoyl phosphate synthase large subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 514

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339


>gi|222110656|ref|YP_002552920.1| carbamoyl-phosphate synthase large subunit [Acidovorax ebreus TPSY]
 gi|221730100|gb|ACM32920.1| carbamoyl-phosphate synthase, large subunit [Acidovorax ebreus
           TPSY]
          Length = 1083

 Score = 68.7 bits (166), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L   ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 90/295 (30%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP+      
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALGLEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L+++++    + 
Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  +   E++R        +
Sbjct: 763 CDVDCVRDASGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 822

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F          ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 NVVGLMNVQFAIQETDDGDVIYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 873


>gi|149182327|ref|ZP_01860805.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1]
 gi|148849946|gb|EDL64118.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. SG-1]
          Length = 906

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACIALKEEGYKVILVNSNPATIMTDSEIADKVYIEPITLEFVSRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +EI  T    +  A   D  R      +  VP    I
Sbjct: 90  LGGQTGLNMAVELANAGVLDECNVEILGTKLSAIEQAEDRDLFRKLMNELNEPVPKSEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +++P       G  +    + +   +     ++   Q L+E+ 
Sbjct: 150 RSVDEAFQFVEEVGYPVIVRPAYTLGGTGGGICHNREELIEIVSSGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSNDSAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQMLRNCS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q +   + I  T    L  A + DK            P   + +     ++    
Sbjct: 640 INLAAQLVERGVRILGTSLEDLDRAENRDKFEYTLQSLGIPQPEGKTAVTVEGAVEIADS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ +   +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEQSELLQYMKNAVKVNPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P ++  D  + +        + +   G+
Sbjct: 760 DGKGVVIPGIMEHIERAG---VHSGDSIAVYPPQQLTRDQKERIIEYTTKLARGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQYVI--SKNEVYVLEVNPRSSRT----VPFLSKITGVPMANLATKVI 860


>gi|295098559|emb|CBK87649.1| carbamoyl-phosphate synthase large subunit [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAVCDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867


>gi|296101206|ref|YP_003611352.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295055665|gb|ADF60403.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAAEVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867


>gi|182420016|ref|ZP_02951250.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           5521]
 gi|237669515|ref|ZP_04529495.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           E4 str. BoNT E BL5262]
 gi|182376053|gb|EDT73640.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           5521]
 gi|237654959|gb|EEP52519.1| carbamoyl-phosphate synthase, large subunit [Clostridium butyricum
           E4 str. BoNT E BL5262]
          Length = 1070

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 32/289 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   +PD       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIIEKERPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEQKVVTLGTTADQIDMAEDREKFDELLEKLGITRPKGKGIWSLEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+   
Sbjct: 700 ARRLGFPVLVRPSYVIGGQGMEITHDEEELTFYLENAFAKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P   I  D+   +          IG
Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNITDDMKGRILDYTKKLALEIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    F+       ++ +E+N +   T     P ++  +G    +L
Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRT----VPYISKVSGVPIVDL 858



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  ++ +                       +  V+A  KPD    
Sbjct: 29  SGTQACEALKSEGIEVVLVNSNPATIMTDKEVADKIYLEPLTLEFLEKVIAKEKPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +  V+      L+   +    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELYDAGILDKYNVRVIGTSIESIKEGEDRELFRNMMNRIGEPVIKSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D  + I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P + +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|299769005|ref|YP_003731031.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1]
 gi|298699093|gb|ADI89658.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp. DR1]
          Length = 1076

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +LE   +    +   A   + D+      +   G+    + +
Sbjct: 89  TMGGQTALNCALALDEHGVLEKYNVELIGASKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALAIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  ++ +   L ++   ++   +L+++++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEEELKRYLREAVQASNEAPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDVYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866


>gi|283850385|ref|ZP_06367674.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           FW1012B]
 gi|283574411|gb|EFC22382.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           FW1012B]
          Length = 1078

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++ +                      +V  ++A  KPD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIAREKPDAILP 88

Query: 57  VLHGNFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V            +E+      ++  A S D  R         VP    
Sbjct: 89  TLGGQTGLNTAVALAESGVLAAHGVELIGASLDVIKKAESRDLFRKAMENIGLKVPKSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I+ P +++P       G  V    + +        + +   ++++EQ
Sbjct: 149 CHTMDDVREWGRKIAFPIIVRPAFTLGGTGGGVAYNMEDLEKISSVGLAASMKSEIMLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +   +      +  K     
Sbjct: 209 SVLGWKEFELEVMRDRADNCVIICSIENIDPMGVHTGDSATVAPIQTLTDDEYQKMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 88/268 (32%), Gaps = 13/268 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  +L   KP+       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVLNILESEKPEGVIVQFGGQTPLNLAVPLLKAGVRILGTSPDSID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   +        +    I  P V++P        + ++  
Sbjct: 675 RAEDRERFQAMLHKLGLRQPANGTAFAVEEACEIADKIGYPVVVRPSYVLGGRAMEIVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +      +   +    +L++++ V+ IE+    + D +       +   +       
Sbjct: 735 RKDLENYFKYAVVASGKHPILVDKFLVNAIEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +  ++ +E++R      + +G  G+    F        ++ LE+N +
Sbjct: 795 ---DSACVLPPHSLSPELIREIERQTVALAEELGVIGLMNIQFAV--KDGDIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              T     P ++   G    +L   ++
Sbjct: 850 ASRTS----PFVSKATGVPLAKLATNVI 873


>gi|300310711|ref|YP_003774803.1| carbamoyl-phosphate synthase large subunit [Herbaspirillum
           seropedicae SmR1]
 gi|300073496|gb|ADJ62895.1| carbamoyl-phosphate synthase (large chain) protein [Herbaspirillum
           seropedicae SmR1]
          Length = 1077

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  ++ +                      +V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPEMADATYIEPITWQAVERIIAKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +LE  ++    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYKVELIGATPEAIDKAEDRSKFKEAMTKIGLGSARSGV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +   Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 SHTMEESWAVQKTIGFPVIIRPSFTMGGTGGGIAYNAEEFETICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 96/300 (32%), Gaps = 37/300 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  ++   KP       
Sbjct: 578 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 637

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 638 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEADAL 697

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE+
Sbjct: 698 QLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 757

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  D  +E++R   L  + 
Sbjct: 758 DVDCLSDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKDTIEELKRQTALMAKG 814

Query: 238 IGCRGISRSDFLF--DPLSRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F      +  K    VF LE+N +   T     P ++   G    ++   
Sbjct: 815 LNVVGLMNVQFAIQQSEVDGKTVDTVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 870


>gi|241763932|ref|ZP_04761974.1| carbamoyl-phosphate synthase, large subunit [Acidovorax delafieldii
           2AN]
 gi|241366755|gb|EER61196.1| carbamoyl-phosphate synthase, large subunit [Acidovorax delafieldii
           2AN]
          Length = 1081

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+  ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWHNGVLDKYKVELIGATPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIVICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 92/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ ++         P   +       +
Sbjct: 644 GGQTPLKLALGLEAEGVPIIGTTPDMIDAAEDRERFQALLHQLQLRQPPNATARTEPEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L+++++    + 
Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +      E++R      + +
Sbjct: 763 CDVDCVRDSTGVTFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDEIKRQTAAMAEGL 822

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F       K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 NVVGLMNVQFAIQEADGKDIIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 873


>gi|153951356|ref|YP_001398673.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           subsp. doylei 269.97]
 gi|152938802|gb|ABS43543.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGAQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQAMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L   E     +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFEAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSIEEAVFKASDIEYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|322834465|ref|YP_004214492.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602]
 gi|321169666|gb|ADW75365.1| carbamoyl-phosphate synthase, large subunit [Rahnella sp. Y9602]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LP      +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPCYTLSKEIQDVMRQQVEKLAFELSVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G +  ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVALAKVAAR 867


>gi|154339056|ref|XP_001565750.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 814

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 75/250 (30%), Gaps = 15/250 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            +ID  R+V  ++   K D+ FN+  G   E      ++E LE          S      
Sbjct: 301 KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 360

Query: 94  MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
               +++       VP    +            +  P ++K L G +S+GI    +  ++
Sbjct: 361 KIDMKLMVGSSGVKVPNFVLLNDEEGLAKKCRHLKFPVIVKHLSGYASVGIHKENRCDTL 420

Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                         +  L+E+++ G E T     D              F   +      
Sbjct: 421 DQLRTRVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQSSDDFA 480

Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +     Y              +         +   G  R DF  D L+   +
Sbjct: 481 YFEKKWTMECGDQAYGFLASSDPAYPAITEMARNAFKYIMNGVGYGRVDFRIDELTGAPY 540

Query: 259 WLEINVQPGM 268
           +LEIN   GM
Sbjct: 541 FLEINPNCGM 550


>gi|332993760|gb|AEF03815.1| carbamoyl phosphate synthase large subunit [Alteromonas sp. SN2]
          Length = 1071

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L E      G  A A+   + R +   +   + +       
Sbjct: 89  TMGGQTALNCALDLDHHGVLKEFNVELIGATADAIDKAENRERFDKAMKNIGLECPRAEI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +MD  H     I  P +I+P       G  +            +    +   +LLI++
Sbjct: 149 AQSMDQAHDVLTRIGFPCIIRPSFTMGGSGGGIAYNIDEFNEICGRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQLMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVDPNTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 582 VHAALSMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPEAIDRAEDRERFQQMVNKLGLKQPANATVTNIEQAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++   + +   L ++   ++   +L+++++D  IE+
Sbjct: 702 AMADGIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLTEAVKVSNDSPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  +I   ++         
Sbjct: 762 DIDAICDGKEVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSKEIQDVMREQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|317473238|ref|ZP_07932535.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA]
 gi|316899333|gb|EFV21350.1| carbamoyl-phosphate synthase [Anaerostipes sp. 3_2_56FAA]
          Length = 1066

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 32/297 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL DAG++   +         D D              V  ++   KPD A     G   
Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++      + + H 
Sbjct: 642 IKLTQALMEMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAHE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    + 
Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P+    + + + +        +++   G
Sbjct: 762 DGEEIII----PGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVIG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F+      +V+ +E+N +   T     P ++   G    +L   ++  A   
Sbjct: 818 LINIQFIVC--DEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGAKIR 868



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKIVEKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G    +  ++             +  T S  +  A    + +         +     +
Sbjct: 90  LGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTMEKIGEPIAAGKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P V +P       G  +    + + + L      +   ++L+E+Y
Sbjct: 150 TDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLRLSRVGEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGW-KEVEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELKVNGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|302773047|ref|XP_002969941.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii]
 gi|300162452|gb|EFJ29065.1| hypothetical protein SELMODRAFT_440891 [Selaginella moellendorffii]
          Length = 1194

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  V+A  +PD    
Sbjct: 123 SGTQACKALKEEGYEVVLINSNPATIMTDPDLADRTYIAPMTPELVEQVIAKERPDAVLP 182

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D+   +Q +   GV   PS +
Sbjct: 183 TMGGQTALNLAVALAESGALDKYGVELIGAKLDAIKKAEDRDLFRQAMQKIGVKTPPSGI 242

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + +   P +I+P       G  +    + +        + +   Q+L+E
Sbjct: 243 ATTLEECFQIAETIGEFPLIIRPAFTLGGTGGGIAYNREELETICKSGLTASITSQVLVE 302

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +   +
Sbjct: 303 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 362

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 363 AIAIIREIGVECGGSNVQFAINPEDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 418

Query: 290 LWM 292
             +
Sbjct: 419 AKL 421



 Score = 37.2 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 15/175 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG---IEL 177
              +  P V++P        + ++  +  +   L  +   + G  +L+++Y+     I++
Sbjct: 811 AKRVGFPVVVRPSYVLGGRAMEIVYSNDKLKKYLETAVEVDPGRPVLVDKYLTDSSEIDV 870

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            C   G+  + +  I         +    +    T  +PA     I            + 
Sbjct: 871 DCLADGNGGVVIGGIMEHIEQAGVHSGDSACSIPTQTIPAVALATIRD----ATTKLAKK 926

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           +   G+    F     S +V+ +E N +   T     P ++   G+    +  L+
Sbjct: 927 LNVCGLMNCQFAIT-QSGEVYIIEANPRASRT----VPFVSKAIGHPLAKYAALV 976


>gi|167745331|ref|ZP_02417458.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662]
 gi|167655052|gb|EDR99181.1| hypothetical protein ANACAC_00022 [Anaerostipes caccae DSM 14662]
          Length = 1066

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 97/297 (32%), Gaps = 32/297 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL DAG++   +         D D              V  ++   KPD A     G   
Sbjct: 582 ALRDAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++      + + H 
Sbjct: 642 IKLTQALMEMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALSAAHE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    + 
Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDIVSFIEIINRQTQEHPILIDKYLVGREVEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P+    + + + +        +++   G
Sbjct: 762 DGEEIII----PGIMEHIERAGIHSGDSISVYPSINLSEKVKRVIAEYTRKLAKSLNVIG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F+      +V+ +E+N +   T     P ++   G    +L   ++  A   
Sbjct: 818 LINIQFIVC--DEEVYVIEVNPRSSRT----VPYISKVTGIPIVDLAAKVIAGAKIR 868



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRALQEEGIEVVLVNSNPATIMTDKDIADKVYIEPLTAEVVEKIVEKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G    +  ++             +  T S  +  A    + +         +     +
Sbjct: 90  LGGQAALNLAMELEENGFLEKSGVRLIGTSSTTIRKAEDRQEFKDTMEKIGEPIAAGKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P V +P       G  +    + + + L      +   ++L+E+Y
Sbjct: 150 TDIPAGAEFAEEIGYPVVCRPAYTLGGSGGGIAHDREELEVILENGLRLSRVGEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGW-KEVEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELKVNGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|332530816|ref|ZP_08406742.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis
           ATCC 19624]
 gi|332039728|gb|EGI76128.1| carbamoyl-phosphate synthase large subunit [Hylemonella gracilis
           ATCC 19624]
          Length = 1088

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  KPD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L   ++    +   A   + D+++ K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWRHGVLHKYKVELIGATPEAIDKAEDRLKFKEAMTRIGLGSARSGI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          +   P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLDEAWAVQKTVGFPVVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLVGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 91/299 (30%), Gaps = 34/299 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALGLEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLLQPPNATARTEPEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 704 EKAQALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +      E++R       A+
Sbjct: 763 CDVDCVRDKSGRTYIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTSAMANAL 822

Query: 239 GCRGISRSDFLFD--PLSRKV----FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F       +  +    + LE+N +   T     P ++   G    ++   
Sbjct: 823 QVVGLMNVQFAIQQIEKNGTIQDVIYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 877


>gi|300939445|ref|ZP_07154107.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           21-1]
 gi|300455666|gb|EFK19159.1| carbamoyl-phosphate synthase, large subunit [Escherichia coli MS
           21-1]
          Length = 1073

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALAVAAEVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTTIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|269103419|ref|ZP_06156116.1| carbamoyl-phosphate synthase large chain [Photobacterium damselae
           subsp. damselae CIP 102761]
 gi|268163317|gb|EEZ41813.1| carbamoyl-phosphate synthase large chain [Photobacterium damselae
           subsp. damselae CIP 102761]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPNMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R    + S G+      +
Sbjct: 89  TMGGQTALNCALDLERHGVLAEFGVEMIGATADAIDKAEDRSRFDAAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLLQPENATVTTIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I   ++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMRDQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|313123764|ref|YP_004034023.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
 gi|312280327|gb|ADQ61046.1| Carbamoyl-phosphate synthase large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus ND02]
          Length = 1066

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/337 (13%), Positives = 108/337 (32%), Gaps = 59/337 (17%)

Query: 4   LMGGISSEREV-------------S--LSSGKAC---------ASALEDAGFKVSQI--- 36
           + GG   E E+             S  +  G+             AL++AG++   +   
Sbjct: 539 VYGG---EHEIQPDRSKKKVIVFGSGPIRIGQGIEFDYCCVHSIWALKEAGYETIIVNNN 595

Query: 37  ------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
                 D D              V  ++   +PD A     G          +   + I 
Sbjct: 596 PETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTAIKLSQDLMKMGVPIL 655

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            T +  + +A   ++            P   ++      + + + +  P +++P      
Sbjct: 656 GTSADSVDAAEDRERFDEILEKCQIDRPKGQTVFTAEEALKAANELGYPVLVRPSYVLGG 715

Query: 139 LGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G+ +   D  +   +             +LI++Y+ G E     + D    +    +  
Sbjct: 716 AGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDAICDDEGILIPGIMEH 775

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +       +S  + +   P KI  ++ + +   +    +A+  +G+    F+      K
Sbjct: 776 VERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVKGLMNIQFIV--YENK 830

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 VYVIEVNPRSSRT----IPYISKVTGIPLVDMATNVI 863



 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL + G +V  I+ + +                     V  ++   KPD     
Sbjct: 30  GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLIEKEKPDALLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           + G    +  +    +  LE   +    +      ++ D++  K ++      V     +
Sbjct: 90  MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +    Q +          +   + LIEQ 
Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNKQELHEICSNGLRLSRVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+  +G        +P S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIITALNIKGGCNVQLALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|293392912|ref|ZP_06637229.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM
           4582]
 gi|291424446|gb|EFE97658.1| carbamoyl-phosphate synthase, large subunit [Serratia odorifera DSM
           4582]
          Length = 1073

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVTAIDQAVEKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|253690008|ref|YP_003019198.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251756586|gb|ACT14662.1| carbamoyl-phosphate synthase, large subunit [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 768 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|225435213|ref|XP_002282042.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 1349

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D              V  VL   +PD    
Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPELVEQVLEKERPDAILP 169

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   KQ + + GV   PS +
Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +        P +I+P       G  +    +          + +   Q+L+E
Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 349

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 350 SVAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 405

Query: 290 LWM 292
             +
Sbjct: 406 AKL 408


>gi|315932562|gb|EFV11494.1| carbamoyl-phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 86/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      + +     +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTAISVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|315123855|ref|YP_004065859.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315017577|gb|ADT65670.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 746

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324


>gi|307747219|gb|ADN90489.1| Carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni M1]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|284102430|ref|ZP_06386048.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria
           sp. WGA-A3]
 gi|283830322|gb|EFC34555.1| carbamoyl phosphate synthase large subunit [Candidatus Poribacteria
           sp. WGA-A3]
          Length = 1100

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                       V  +L   +PD    
Sbjct: 29  SGTQACKTLKQEGYEVVLINSNPATIMTDPELADRTYIEPITVEVVERILEEERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE   +    +   A   + D+   K+ + + G+    S  
Sbjct: 89  TMGGQTALNVTMSLQERGALEKYNVQLIGANYEAINKAEDRDAFKRAMDNIGLATPTSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      M+   ++  P +++P       G  +    +    D+  +   +   + LIE+
Sbjct: 149 IRNREDAMNFLEIVGFPAIVRPSFTLGGAGGNIAYNREEFERDVDWALLTSPVGEALIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I  P  +F +  +      +          +  +     
Sbjct: 209 SLIGWKEYELEVMRDLNDNVVIVCPIENFDAMGIHTGDSITVAPAMTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIQEIGVETGGSNIQFALNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 39.5 bits (90), Expect = 0.64,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 85/286 (29%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G +   +         D D S  L    L  +   N++             G   
Sbjct: 615 ALRELGIETIMVNCNPETVSTDYDTSDRLYFEPLVEEDVLNIMEVERPMGVVVQFGGQTP 674

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T    +  A   ++  +         P   +             
Sbjct: 675 LKLALPLARAGIPILGTSPDAIDRAEDRERFSALITTLGLRQPRNGAARSGDEASAVASR 734

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++  + S+   +  +        LLI+QY  D IE+    +
Sbjct: 735 IGYPVIVRPSYVLGGRAMQIVYDEPSLRSYVENTVMTADQFPLLIDQYLTDAIEVDVDAV 794

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  +  ++   ++       + +   G
Sbjct: 795 SDGAEVVVAGIMEHVEEAGIHSG---DSACSLPPHSLTPELIDRIRTQTVALARELQVVG 851

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F       +V  LE+N +   T     P ++   G    +L
Sbjct: 852 LMNVQFAV--QENEVSILEVNPRASRT----VPFVSKTIGVPLAKL 891


>gi|283955701|ref|ZP_06373192.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283792656|gb|EFC31434.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 84/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F       +++ +E+N +   T
Sbjct: 793 SACSLPPCSIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHH--NELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|86151232|ref|ZP_01069447.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85841579|gb|EAQ58826.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|251797846|ref|YP_003012577.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           JDR-2]
 gi|247545472|gb|ACT02491.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           JDR-2]
          Length = 1072

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVVLINSNPATIMTDTNMADKVYIEPITLDFVSQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGVLEQENVKLLGTQLTAIEKAEDRDLFRDLMRELEQPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTVEEAVTFANEIGYPIIVRPAYTLGGTGGGICGNEEELRETVASGIRYSPISQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDANNNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  V+   KP        G   
Sbjct: 589 AIQNAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  +    + +A    K  +     +   P   ++      +++   
Sbjct: 649 INLAAPLTKAGVRILGSSLESIDTAEDRKKFEALLRNLNIAQPEGSTVTSVDQAVETAQK 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ +   +  +   N    +LI++Y+ G E     + 
Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEVAVKINPEHPVLIDRYMLGKEAEVDAIC 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  DI  ++  +     +A+   G+
Sbjct: 769 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQSLSDDIKNQIVDITVNIAKALKVIGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+    + KV+ +E+N +   T     P ++         L    +
Sbjct: 826 VNIQFVI--HNEKVYVIEVNPRSSRT----VPFLSKVTDLPMANLATKAI 869


>gi|59711080|ref|YP_203856.1| carbamoyl phosphate synthase large subunit [Vibrio fischeri ES114]
 gi|59479181|gb|AAW84968.1| carbamoyl-phosphate synthase, large subunit [Vibrio fischeri ES114]
          Length = 1076

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      +D    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLELLQPENATVTTMEQAIDKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSEEIQDVMRDQVRKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       KV+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNKVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|260549216|ref|ZP_05823436.1| carbamoyl-phosphate synthase large subunit [Acinetobacter sp.
           RUH2624]
 gi|260407622|gb|EEX01095.1| carbamoyl-phosphate synthase large subunit [Acinetobacter sp.
           RUH2624]
          Length = 1076

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R    ++   + +       
Sbjct: 89  TMGGQTALNCALALDENGVLAKYNVELIGATKEAIEKAEDRKLFDIAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  ++  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEVQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|221124414|ref|XP_002164112.1| PREDICTED: similar to ADP-forming, carbamate-phosphorylating [Hydra
           magnipapillata]
 gi|260220956|emb|CBA29040.1| Carbamoyl-phosphate synthase large chain [Curvibacter putative
           symbiont of Hydra magnipapillata]
          Length = 1084

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  KPD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+  ++    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWHHGVLDKYKVELIGATPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEAWAVQKTLGFPTVIRPSFTLGGTGGGIAYNSEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 94/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 646

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +      +   P   +       +
Sbjct: 647 GGQTPLKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHALNLRQPPNATARTEAEAL 706

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 707 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 765

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  D   E++R       A+
Sbjct: 766 CDVDCIRDATGDTFIGGVMEHIEQAGVHSGDSACSLPPYSLHADTVTEIKRQTKAMAGAL 825

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F    +  K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 826 NVVGLMNVQFAIQNVDGKDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 876


>gi|219849332|ref|YP_002463765.1| carbamoyl-phosphate synthase large subunit [Chloroflexus aggregans
           DSM 9485]
 gi|219543591|gb|ACL25329.1| carbamoyl-phosphate synthase, large subunit [Chloroflexus aggregans
           DSM 9485]
          Length = 1096

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      S+  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPGLADATYIEPLTVPSLERIIARERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         IL+   +    + + A  ++ D+ R K  +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVALHEAGILDKYGVELIGASVEAVRIAEDRQRFKDKMIEIGLQVPRSGT 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +     P +I+P       G  +    +     + +    +   Q+LIE+
Sbjct: 149 ATTLDEALAVVAQTGFPAIIRPSFTLGGEGGGIAYNMEEFRAIVERGLDASPVSQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELEVMRDRNDNGVIICSIENIDPMGVHTGDSITVAPAMTLTDREYERMRDMG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F   P   +++ +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLRAVGVETGGSNVQFAVSPTDGRIYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 94/297 (31%), Gaps = 34/297 (11%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L   G++   +         D D              V  V+   +PD       G    
Sbjct: 593 LRALGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNVVEEERPDGVIIQFGGQTPL 652

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T    +  A   D+  +     +   P   S       +     I
Sbjct: 653 KLARALEAVGVPIWGTMPEAIDLAEDRDRFGALLKELNIPAPEHGSATSWEEALSVARRI 712

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + ++  D S+   + ++ + +    +LI+++++       +  D
Sbjct: 713 GYPVVVRPSYVLGGRAMAIVYDDASLERYMREAVAASPEHPVLIDRFLED---AFEMDVD 769

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRGI 243
           A  D   + +             S +S  V+P  +  + +    R       +A+G  G+
Sbjct: 770 AVCDGETVVIAGIMEQIELAGVHSGDSACVIPTYMVAEEHVATMRRYTEQLARALGVVGL 829

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               +        V+ LE+N +   T     P +A   G  + +L    V+ A+  R
Sbjct: 830 MNIQYAM--KDGVVYVLEVNPRASRT----VPFVAKATGVPWAQLA---VQCAAGAR 877


>gi|110833179|ref|YP_692038.1| carbamoyl phosphate synthase large subunit [Alcanivorax borkumensis
           SK2]
 gi|110646290|emb|CAL15766.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax
           borkumensis SK2]
          Length = 1072

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLDHNGVLKEFGVEMIGATEDAIDKAEDRSRFDKAMKSIGLECPRSAI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     S  L  +  P +I+P       G  V    +       +    +  ++LLI++
Sbjct: 149 AHNMEEASAALESLGFPCIIRPSFTMGGSGGGVAYNREEFEEICQRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          ++       
Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKELQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 91/266 (34%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  KP        G              + I  T    + 
Sbjct: 613 DRLYFEPITL---EDVLAIVAKEKPKGVIVQYGGQTPLKLARALQAAGVPIIGTPPDAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +       +     I  P V++P        + ++  
Sbjct: 670 EAEDRERFQQMVNKLGLKQPPNRTARSMEDGVRLAEEIGYPLVVRPSYVLGGRAMEIVYG 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  +   ++ + S ++   +L+++++D  IE+    + D +  V    +   +       
Sbjct: 730 EAELRNYMMNAVSVSNDSPVLLDRFLDDAIEVDVDAVCDGTDVVIGGIMQHIEQAG---V 786

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+   +++ A      +G  G+    F     + +V+ LE+N +
Sbjct: 787 HSGDSACSLPPYSLDDDVQDVMRQQAADMALELGVVGLMNVQFAV--KNGEVYVLEVNPR 844

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G S  ++   
Sbjct: 845 ASRT----VPYVSKCIGVSLAKVAAR 866


>gi|261338962|ref|ZP_05966820.1| hypothetical protein ENTCAN_05164 [Enterobacter cancerogenus ATCC
           35316]
 gi|288318790|gb|EFC57728.1| carbamoyl-phosphate synthase, large subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 1074

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIPLAKVAAR 867


>gi|50085901|ref|YP_047411.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp.
           ADP1]
 gi|49531877|emb|CAG69589.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter sp.
           ADP1]
          Length = 1077

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGASKDAIEKAEDRKLFDQAMRKIGLECPKAAI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AENIQEALEIQSKFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 86/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      M
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  D  +   L  +   ++   +L++ ++D   E+
Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +   I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSDTIQNEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGDDVYVLEVNPRASRT----VPFVSKCIGDSLAKVAAR 866


>gi|82750808|ref|YP_416549.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           RF122]
 gi|123549035|sp|Q2YXG5|CARB_STAAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|82656339|emb|CAI80756.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus
           RF122]
          Length = 1057

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNYLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELTTLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|86153906|ref|ZP_01072109.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|121612525|ref|YP_999993.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|167004949|ref|ZP_02270707.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|85842867|gb|EAQ60079.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87250448|gb|EAQ73406.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 81-176]
          Length = 1089

 Score = 68.4 bits (165), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAADEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +  + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINSKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDVAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|224541435|ref|ZP_03681974.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525627|gb|EEF94732.1| hypothetical protein CATMIT_00597 [Catenibacterium mitsuokai DSM
           15897]
          Length = 1065

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  I+        D+ +                ++   KPD     
Sbjct: 30  GTQACRALKEEGIEVVLINSNPATIMTDKDIADHVYIEPLTVPVVKNLILKEKPDSILPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +  +    +  LE   +    +      L+ D+   +         V     +
Sbjct: 90  LGGQNALNIAMALDDEGFLEAHNVRTIGTNTTTIKLAEDRLEFKELMERIHEPVAASTVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  + +  + +          +   Q LIE+ 
Sbjct: 150 NHVDDALEFAEKIGYPVVVRPAYTLGGTGGGIAETPEELHDICTNGLRLSRVSQCLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+  +G     F  +P S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIITALNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 97/293 (33%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL  AG++   +         D D              V  ++   KPD A     G
Sbjct: 578 CVWALRAAGYETIIVNNNPETVSTDFDIADRLYFEPLTQEDVQSIVELEKPDGAIVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                     +   + I  T +  + +A   ++            P   ++      ++ 
Sbjct: 638 QTAIKLTQDLMDMGVPILGTSADSVDAAEDRERFDEVLEKCEIDRPRGATVFTVDEALEV 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   D  I   +   +       +LI++Y+ G E+   
Sbjct: 698 ANKLGYPVLVRPSYVLGGAGMEIALNDGDIKKFMKIINRQFQEHPILIDKYLSGKEVEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  + +   P KI  +I K +        +A+  
Sbjct: 758 AVCDENGVLIPGVMEHVERAG---VHSGDSISVYPPQKIKPEIKKVICDYTQRLAKALHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 815 IGLINIQFIV--YEDEVYVIEVNPRSSRT----IPYISKVTDIPVVDVATKVI 861


>gi|315057703|gb|ADT72032.1| Carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 1089

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    + G +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYIQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKAMGIPLAKVATR 868


>gi|256419162|ref|YP_003119815.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
 gi|256034070|gb|ACU57614.1| phosphoribosylglycinamide synthetase [Chitinophaga pinensis DSM
           2588]
          Length = 353

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 66/328 (20%), Positives = 117/328 (35%), Gaps = 46/328 (14%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH------ 59
           GG S        SG   A AL +    VS   +   + + L  + PD    +LH      
Sbjct: 30  GGYS-------DSGADIAYALREKQVPVSTPVIHPQLMIDLDWVFPDTEAGILHALSKGA 82

Query: 60  -----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
                     +G          I         + L  DK  + +++    +P+ P+IL+N
Sbjct: 83  QVLWLNTILYNGHPVEAFLKKGIAAVGQLPRNTDLYDDKWTTNKLLQKNNLPIPPAILIN 142

Query: 115 RFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLIEQYV 172
           +    D Q   S P V KP++G  S G+ V+     +   L +      +G  + +E+++
Sbjct: 143 KDNLHDYQLHFSFPAVAKPIRGRGSDGVQVVDTADGLHKVLKEMFAEDKYGTAVYVEKFL 202

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV----- 227
            G E+T  VM      + +I   K +++S        +   V P    + +         
Sbjct: 203 PGREVTITVMPPGKYMIRDICQEKINYWSLPPVERFNHEDGVAPYNGTVAVVNNSKVLDD 262

Query: 228 -----------QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT------- 269
                       +    A   +G +   R D   D    + F  ++N++P MT       
Sbjct: 263 AQLQSPAIITLCKQCESAAALVGAKAPVRIDCRQDEQ-GRYFLFDLNMKPNMTGASRPHR 321

Query: 270 --PVSIFPEMAAYAGYSFRELLLWMVED 295
               S+    A   G++F +LL  M+  
Sbjct: 322 MDQDSLSALAARKIGWTFADLLENMLRQ 349


>gi|148926982|ref|ZP_01810658.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145844390|gb|EDK21499.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 1095

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 35  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 94

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    + G +         +         +P      
Sbjct: 95  TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 154

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 215 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 274

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 275 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 625 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 681

Query: 93  KMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+    +         +     I  P +++P        + V+  +  +
Sbjct: 682 RKKFAEFITKLGINQPKNFTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 742 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 798

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 799 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 856

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 857 ----VPFVSKATGIPLAKVATR 874


>gi|57237334|ref|YP_178347.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           RM1221]
 gi|57166138|gb|AAW34917.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           RM1221]
          Length = 1089

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    + G +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPGAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 84/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSSRVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RFYIQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKAMGIPLAKVATR 868


>gi|238755529|ref|ZP_04616868.1| Carbamoyl-phosphate synthase large chain [Yersinia ruckeri ATCC
           29473]
 gi|238706285|gb|EEP98663.1| Carbamoyl-phosphate synthase large chain [Yersinia ruckeri ATCC
           29473]
          Length = 1077

 Score = 68.0 bits (164), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +     +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERHGVLAEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + +  T    +  A   ++ +          P   ++      +D    
Sbjct: 648 LKLARELEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVDKAAG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 867


>gi|260588555|ref|ZP_05854468.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
 gi|260541030|gb|EEX21599.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
          Length = 1072

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 103/296 (34%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPSTADVTYIEPLNVDRLTEIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G       E+     +L+   +      + A +   D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYHAGVLDKYNVEVIGVQVDAISRGEDRIEFKNAMDKLGIEMAKSAP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P VI+P       G  ++  ++ +     +  + +  +Q+L+E+
Sbjct: 149 AYSVEEALKIAEELGYPCVIRPAYTMGGTGGGIVYNEEELKKVAARGIAASMVNQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E    V         +I++   +       ++  +        I  D+   +++ 
Sbjct: 209 SVIGWE-ELEVEVVRDKAGKKISICFIENIDPMGVHTGDSFCSAPMLTISQDLQDRLEKQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    ++IG  G +   F  DP S ++  +EIN +   T  S     +   G+   
Sbjct: 268 AHAIVESIGVIGGTNVQFAHDPKSDRIIIIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 41.4 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 33/295 (11%)

Query: 22  CASA--LEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVL 58
             +A  L + GF+   +         D D S  L                 KP       
Sbjct: 576 VHAAFTLRELGFETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVMSIYNKEKPLGIIVQF 635

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +   +       I  T   ++  A   D   +        +P     +     +
Sbjct: 636 GGQTPLNIAAELEKRGAHILGTSPAVIDMAEDRDLFNAMMHKLEIPMPESGMAVNVEEAL 695

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  H I  P +++P       G+ V+  D  +   +  +        +L+++++   +  
Sbjct: 696 EIAHRIGYPMMVRPSYVLGGRGMEVVYDDNMLRDYMAAAIDVTPERPILMDKFL---QNA 752

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQA 237
                DA  D T   VP    +  +    S +S  V+P+    +  KE +++        
Sbjct: 753 LECETDAISDGTHAFVPTVMQHIEQAGIHSGDSACVIPSVEISEKNKELIRKYTTAIACE 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G  G+    +       KV+ LE N +   T     P ++     +   +   +
Sbjct: 813 MGVVGLMNMQYAICE--DKVYVLEANPRASRT----VPLVSKVCNINMANIATKL 861


>gi|301299457|ref|ZP_07205733.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
 gi|300852939|gb|EFK80547.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           salivarius ACS-116-V-Col5a]
          Length = 1061

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +++  T    +  A    + +      +  VP   +
Sbjct: 89  TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  +    + +   +      +   Q LIE+
Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +   +     +F    +                 + Y+ ++  
Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++  G++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   +             P+  +       +    
Sbjct: 639 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     +
Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     +I +++         A+ C G
Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|300214099|gb|ADJ78515.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus salivarius CECT
           5713]
          Length = 1061

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +++  T    +  A    + +      +  VP   +
Sbjct: 89  TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  +    + +   +      +   Q LIE+
Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +   +     +F    +                 + Y+ ++  
Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++  G++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   +             P+  +       +    
Sbjct: 639 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKSLGLKQPIGKTATTQEQVIACAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     +
Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     +I +++         A+ C G
Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|238925027|ref|YP_002938543.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
 gi|238876702|gb|ACR76409.1| D-ala D-alanine ligase [Eubacterium rectale ATCC 33656]
          Length = 332

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/288 (20%), Positives = 114/288 (39%), Gaps = 16/288 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNF--GEDGLVQAILEL 74
                A++  G+          +   +         +  N   G           A+LE+
Sbjct: 35  TEIMDAIKSLGYNCDYFGGIPELIHAIDTNQSFDDSIFLNFSDGMDEDYSRIQAPALLEI 94

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIK 131
           L +PY+ SG+  SAL  +K   K+ + + G+ +  S +VN               P  +K
Sbjct: 95  LNVPYSGSGVFPSALMNNKHFCKKALLNLGIRMPKSCIVNHDFPLNCAQLRKWKYPLFVK 154

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIELTCGVMGDASLDVT 190
           P   GSSLGI       +I   + + +       +++IE+YV+GI++T  ++G+ +    
Sbjct: 155 PNCEGSSLGISNDCVCHTIDEVIKKCNKLLMDFQEIIIEEYVEGIDVTNYLIGNNASYYI 214

Query: 191 EIA-------VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                           Y    K + L +  +    IP ++ + ++R + L  Q +G   I
Sbjct: 215 NSIVTAKLFDESSYAIYGINEKQNKLRTLFIDDEYIPTNLVEAIKRQSILIAQTLGVHDI 274

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            R D+  +   ++  ++EIN  P  +  S    +A      F +++ +
Sbjct: 275 CRIDYRVNVSKQEFDFIEINSAPRFSSTSEIGFIAQKNNILFSKMVQY 322


>gi|227891888|ref|ZP_04009693.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227866351|gb|EEJ73772.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      SV  ++    PD    
Sbjct: 44  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 103

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +++  T    +  A    + +      +  VP   +
Sbjct: 104 TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 163

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  +    + +   +      +   Q LIE+
Sbjct: 164 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 223

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +   +     +F    +                 + Y+ ++  
Sbjct: 224 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 282

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 283 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 338

Query: 291 WM 292
            +
Sbjct: 339 KI 340



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 93/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++  G++          +  D S+   L    L  +   NV+             G  
Sbjct: 594 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   +             P+  +  +    +    
Sbjct: 654 AINLAAGLEAHGVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATIQEQVIACAE 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     +
Sbjct: 714 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     +I +++         A+ C G
Sbjct: 774 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 831 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 875


>gi|90961175|ref|YP_535091.1| carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius UCC118]
 gi|122449391|sp|Q1WVA9|CARB_LACS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|90820369|gb|ABD99008.1| Carbamoyl-phosphate synthase large chain [Lactobacillus salivarius
           UCC118]
          Length = 1061

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADKVYIEPLTVESVSRIIRQEFPDAILP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +++  T    +  A    + +      +  VP   +
Sbjct: 89  TLGGQIGLNLAIALAKTGILEELGIKLLGTQLDAIDQAEDRQRFKDLMQELNEPVPDSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  +    + +   +      +   Q LIE+
Sbjct: 149 VETVQEALDFAAEIGYPVIVRPAFTMGGTGGGLCDNPEQLKEIVANGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +   +     +F    +                 + Y+ ++  
Sbjct: 209 SIMGYKEIEFEVMRDADNNAMVVCSMENFDPVGIHTGDSIVFAPTQTLSDRE-YQMLRNC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKLIRALKIEGGCNVQLALDPNSYRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 92/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++  G++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQKLGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPMGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   +             P+  +       +    
Sbjct: 639 AINLAAGLEAHSVKILGTTVEDLDRAEDRELFDQTIKNLGLKQPIGKTATTQEQVIACAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   L Q++       +L++ Y+ G+E     +
Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNEQELLDYLAQNAPAEIDHPILVDAYLSGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     +I +++         A+ C G
Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDENIKQQIVDATEKLAVALKCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFII--HNNEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|152980458|ref|YP_001353932.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp.
           Marseille]
 gi|151280535|gb|ABR88945.1| carbamoyl-phosphate synthase large chain [Janthinobacterium sp.
           Marseille]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L   +     +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHNGVLTKYKCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 SHTLEESWAVQKELGFPVIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFSINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 95/300 (31%), Gaps = 37/300 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPYGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 637 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKMLHDLKLRQPPNRTARTEEDAL 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE+
Sbjct: 697 RLAQEIGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEV 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R   L  + 
Sbjct: 757 DVDCLSDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQETIDELKRQTSLMAKG 813

Query: 238 IGCRGISRSDFLFDPL--SRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F         K    VF LE+N +   T     P ++   G    ++   
Sbjct: 814 LNVVGLMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRT----VPYVSKATGLQLAKIAAR 869


>gi|311280978|ref|YP_003943209.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           SCF1]
 gi|308750173|gb|ADO49925.1| carbamoyl-phosphate synthase, large subunit [Enterobacter cloacae
           SCF1]
          Length = 1074

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLAEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEALAVAADVGYPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVDRLKLKQPANATVTAIEQAVEKAKD 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQNVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|260775356|ref|ZP_05884253.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus
           ATCC BAA-450]
 gi|260608537|gb|EEX34702.1| carbamoyl-phosphate synthase large chain [Vibrio coralliilyticus
           ATCC BAA-450]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTIEQAVEKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|20094347|ref|NP_614194.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|22095504|sp|Q8TWX0|CARB1_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|19887409|gb|AAM02124.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 564

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D +            R V  ++   +PD    
Sbjct: 27  SGSQACKALREEGVEVVLVNSNPATIMTDPNMADRVYLEPLDARIVAKIIEEERPDGILP 86

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G          D +       +E+  T    +  A   D+ R+        V    +
Sbjct: 87  TLGGQTGLNIAVELDEMGVLEEYDVEVLGTSVETIVRAEDRDEFRAFMKKIGEPVCASEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P V++P       G  + + ++ +   + +   ++  +Q+LIE+
Sbjct: 147 VSSVEEAKEVAEEIGYPVVVRPAYTLGGTGGGIAEDEEELKRVVERGLEYSRVNQVLIEE 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV G       +               +       ++  +        +  + ++ ++  
Sbjct: 207 YVGGWAEIEYEVMRDGSGNCITVCSMENVDPMG-VHTGESIVVAPAQTLTEEEHQMLRSA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           A     A+G  G     F     + +   +E+N  P ++  S     +   GY 
Sbjct: 266 ALHIIDALGVEGGCNIQFALHRETGEYRVIEVN--PRVSRSS--ALASKATGYP 315


>gi|311086459|gb|ADP66540.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. TLW03 (Acyrthosiphon pisum)]
          Length = 1079

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + + A   + ++   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 106/323 (32%), Gaps = 47/323 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   +           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++   KP        G        +   E + I  T    + +A +
Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +          P+  ++L          +I  P +++P        + ++ +   +
Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +   N+   +L++QY+D   E+    + D    +    +   +       +S  
Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    +   +  E++R        +  +G+    F     + K++ +E+N +   T
Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
                P ++   G +  ++ + +
Sbjct: 850 ----VPFVSKATGLALAKISVRI 868


>gi|311085887|gb|ADP65969.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. LL01 (Acyrthosiphon pisum)]
          Length = 1079

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + + A   + ++   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   +           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++   KP        G        +   E + I  T    + +A +
Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +          P+  ++L          +I  P +++P        + ++ +   +
Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +   N+   +L++QY+D   E+    + D    +    +   +       +S  
Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    +   +  E++R        +  +G+    F     + K++ +E+N +   T
Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G +  ++
Sbjct: 850 ----VPFVSKATGLALAKI 864


>gi|219681519|ref|YP_002467904.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|257471200|ref|ZP_05635199.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. LSR1 (Acyrthosiphon pisum)]
 gi|219624362|gb|ACL30517.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           5A (Acyrthosiphon pisum)]
 gi|311087040|gb|ADP67120.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. JF99 (Acyrthosiphon pisum)]
          Length = 1079

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + + A   + ++   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   +           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++   KP        G        +   E + I  T    + +A +
Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +          P+  ++L          +I  P +++P        + ++ +   +
Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +   N+   +L++QY+D   E+    + D    +    +   +       +S  
Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    +   +  E++R        +  +G+    F     + K++ +E+N +   T
Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G +  ++
Sbjct: 850 ----VPFVSKATGLALAKI 864


>gi|219682075|ref|YP_002468459.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
 gi|219621808|gb|ACL29964.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           Tuc7 (Acyrthosiphon pisum)]
          Length = 1079

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYIEPIHWEIVEKIIQKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + + A   + ++   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   +           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++   KP        G        +   E + I  T    + +A +
Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +          P+  ++L          +I  P +++P        + ++ +   +
Sbjct: 675 RYRFQKTVNKLRLQQPLNTTVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +   N+   +L++QY+D   E+    + D    +    +   +       +S  
Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    +   +  E++R        +  +G+    F     + K++ +E+N +   T
Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G +  ++
Sbjct: 850 ----VPFVSKATGLALAKI 864


>gi|15616764|ref|NP_239976.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. APS (Acyrthosiphon pisum)]
 gi|11131697|sp|P57244|CARB_BUCAI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|25293875|pir||F84946 carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC 6.3.5.5)
           large chain [imported] - Buchnera sp. (strain APS)
 gi|10038827|dbj|BAB12862.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           APS (Acyrthosiphon pisum)]
          Length = 1079

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALKEEGYRIILLNSNPATIMTDPDMADATYVEPIHWEIVEKIIQKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + + A   + ++   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELDHKGILKKYGVQIIGATVDAIKKAENRKLFEHSMKKLNLETAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEAFLVLNNVGFPCIIRPSFTMGGHGGGIAYNHEEFEKICERGLELSPSTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 104/319 (32%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + +L GG +         G+           A AL + GF+   +           D+  
Sbjct: 562 IIILGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMVNCNPETVSTDYDISD 614

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++   KP        G        +   E + I  T    + +A +
Sbjct: 615 RLYFEPITLENVLEIVRIEKPKGVIIQYGGQTPLKLAHEFEKEGVPIIGTSPDSIDTAEN 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + +          P+  ++L          +I  P +++P        + ++ +   +
Sbjct: 675 RYRFQKTVNKLRLQQPLNATVLTLDEAYKKADIIGYPIMVRPSYVLGGRAMEIVYEPYGL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +   N+   +L++QY+D   E+    + D    +    +   +       +S  
Sbjct: 735 ENYFKTTLKKNNTTPILLDQYLDYATEVDVDAICDGETVLIGGIMEHIEQAG---VHSGD 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    +   +  E++R        +  +G+    F     + K++ +E+N +   T
Sbjct: 792 SACSLPAYTLTSKVQNEIRRQVKKLAFELSVKGLMNIQFAI--KNNKIYIIEVNPRAART 849

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G +  ++
Sbjct: 850 ----VPFVSKAIGLALAKI 864


>gi|50294352|ref|XP_449587.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528901|emb|CAG62563.1| unnamed protein product [Candida glabrata]
          Length = 1834

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 82/286 (28%), Gaps = 27/286 (9%)

Query: 23  ASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           A AL+  G  V +  +    +  +      D      +G   E+       E   I +  
Sbjct: 676 AQALD--GHTVEETYLHVEKIISIAKKYDVDAIIPG-YGFLSENASFADRCEQEGIQFIG 732

Query: 82  SGILASA---LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                     L        +      VP  P +            I  P ++K   GG  
Sbjct: 733 PRGETIRKLGLKHSAREVAKSAGVPLVPGSPLVKNADEAFTIAKNIGYPVMVKSTAGGGG 792

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+  +  +Q +                    +++        +    +   +       
Sbjct: 793 IGLQKVDNEQDMRKAFETVKHQGSSYFGDSGVFMEKFIDNARHVEVQIMGDGKGKTLALG 852

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                L+  +       PA   P +  +++   A      +  RG    +F++D    + 
Sbjct: 853 ERDCSLQRRNQKVIEETPAPNLPRETRQKMLTAAERLGAYLNYRGAGTVEFIYDEQRDQF 912

Query: 258 FWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
           ++LE+N +              +       G    +L+ WM++ ++
Sbjct: 913 YFLEVNTR----------LQVEHPITEMVTGL---DLVEWMIKISA 945


>gi|77456994|ref|YP_346499.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           Pf0-1]
 gi|77380997|gb|ABA72510.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens
           Pf0-1]
          Length = 1073

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKAIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 87/284 (30%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  +    KP        G   
Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ K++ +   L  +   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPARIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGISLA 861


>gi|332974637|gb|EGK11554.1| carbamoyl-phosphate synthase, large subunit [Kingella kingae ATCC
           23330]
          Length = 1070

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGAQACKALCEEGYKVILVNSNPATIMTDPNIADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKDAMAKIGLNTPKSFI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALRAQEEVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/177 (16%), Positives = 65/177 (36%), Gaps = 15/177 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P V++P        + V+  ++ +   + ++   +    +L++ +  + IE+  
Sbjct: 699 AEEIGYPLVVRPSYVLGGRAMQVVHSEEQLQRYMREAVQVSEDSPVLLDFFLNNAIEVDV 758

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +           ++  + P  + ++I  E++R       A+ 
Sbjct: 759 DCVSDGKEVVIGGIMQHVEQAGIHSG---DSACSLPPYSLSVEIQDEIRRQTKAMAFALN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
            +G+    F        VF LE+N       P ++  +  P     A   AG S +E
Sbjct: 816 VKGLMNVQFAV--QDGVVFVLEVNPRASRTVPFVSKATSVPLAKIGARAMAGISLQE 870


>gi|315929563|gb|EFV08752.1| Carbamoyl-phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 990

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIDFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----IPFVSKATGIPLAKVATR 868


>gi|332876149|ref|ZP_08443931.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6014059]
 gi|322509164|gb|ADX04618.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii
           1656-2]
 gi|323519192|gb|ADX93573.1| carbamoylphosphate synthase large subuni [Acinetobacter baumannii
           TCDC-AB0715]
 gi|332735647|gb|EGJ66692.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6014059]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|184159250|ref|YP_001847589.1| carbamoylphosphate synthase large subunit [Acinetobacter baumannii
           ACICU]
 gi|183210844|gb|ACC58242.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Acinetobacter baumannii ACICU]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|169632633|ref|YP_001706369.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii SDF]
 gi|169151425|emb|CAP00159.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +           D+             V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDISDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQNEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|169794964|ref|YP_001712757.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AYE]
 gi|213157625|ref|YP_002320423.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB0057]
 gi|215482515|ref|YP_002324703.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB307-0294]
 gi|239503381|ref|ZP_04662691.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB900]
 gi|260556446|ref|ZP_05828664.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|301346070|ref|ZP_07226811.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB056]
 gi|301511498|ref|ZP_07236735.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB058]
 gi|301595421|ref|ZP_07240429.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB059]
 gi|332855123|ref|ZP_08435706.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013150]
 gi|332868231|ref|ZP_08438073.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013113]
 gi|169147891|emb|CAM85754.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AYE]
 gi|193078157|gb|ABO13100.2| carbamoyl-phosphate synthase large subunit [Acinetobacter baumannii
           ATCC 17978]
 gi|213056785|gb|ACJ41687.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii AB0057]
 gi|213987785|gb|ACJ58084.1| Carbamoyl-phosphate synthase large chain(Carbamoyl-phosphate
           synthetase ammonia chain) [Acinetobacter baumannii
           AB307-0294]
 gi|260409705|gb|EEX03005.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii ATCC 19606]
 gi|332727626|gb|EGJ59045.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013150]
 gi|332733492|gb|EGJ64662.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           baumannii 6013113]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDENGVLEKYGVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AETMEEALEIQSRFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTHQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 642 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 702 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|88597206|ref|ZP_01100441.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218561941|ref|YP_002343720.1| carbamoyl phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
 gi|22095538|sp|Q9PIL7|CARB_CAMJE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|88190267|gb|EAQ94241.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112359647|emb|CAL34432.1| carbamoyl-phosphate synthase large chain [Campylobacter jejuni
           subsp. jejuni NCTC 11168]
          Length = 1089

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIDFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----IPFVSKATGIPLAKVATR 868


>gi|218781319|ref|YP_002432637.1| carbamoyl-phosphate synthase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762703|gb|ACL05169.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1075

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLVNSNPATIMTDPETADRTYVEPVTPDAVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  ++     +LE   +    + +     + D+   +  + + G+ V  S  
Sbjct: 89  TLGGQTGLNTAIEVAKRGVLEKYGVEMIGARVEVIEKAEDRELFRTAMENIGLSVPQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P       G  +    + + + +      +   Q+++EQ
Sbjct: 149 VHTLEEARKAAKDIGFPIIIRPSYTLGGTGGGIAYNVEDLDVFVKSGLDASLIHQVMLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +                   
Sbjct: 209 SVLGWKEFELEVMRDKADNVVIICSIENMDPMGVHTGDSITVAPAQTLTDKQYQIMRDAT 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVMREIGVDTGGSNVQFAVNPENGDMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 38.7 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   +         D D              V  +    KP        G   
Sbjct: 589 ALREEGVESIMVNSNPETVSTDYDTSDKLYFEPLTAEDVLHIAESEKPAGVIVQFGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   +  +          P   + +    T+     
Sbjct: 649 LNIATAINKAGVPIIGTQPESIDRAEDRELFKVMLKKLGLVQPENGTAMDIPGTLAIAEE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++    ++     ++   + G  +LI+++++       V  
Sbjct: 709 IGYPVIVRPSFVLGGRAMKIVYDSSALEEFAREAIVASEGHPVLIDKFLEN---AVEVDV 765

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           DA  D     V     +  E    S +S  VLP K   + I  +++       + +   G
Sbjct: 766 DAVCDGETTIVAGIMEHIEEAGIHSGDSACVLPPKSLSENIKNQIRTATQALAKELNVIG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +       ++F +E+N +   T     P ++   G  + ++   
Sbjct: 826 LMNIQYAV--KDEELFVIEVNPRASRT----VPFVSKATGVPWAKIATK 868


>gi|315646059|ref|ZP_07899180.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex
           V453]
 gi|315278820|gb|EFU42134.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus vortex
           V453]
          Length = 1068

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGIEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELEQPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 MD    I  P +++P       G  +   ++ +   +     ++   Q LIE+ 
Sbjct: 150 TTLEEAMDFADEIGYPLIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMHVIEQEKPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A    K  +         P   +++     +++   
Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLDIAQPKGKTVISVDDAVETAQS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+ +++  +     + +  RG+
Sbjct: 768 DGDTVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKEKITEITIKIAKELNTRGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868


>gi|56964098|ref|YP_175829.1| carbamoyl phosphate synthase large subunit [Bacillus clausii
           KSM-K16]
 gi|56910341|dbj|BAD64868.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Bacillus clausii KSM-K16]
          Length = 1062

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVILINSNPATIMTDTAMADRVYIEPLTLEFVTRIIRKERPDGLLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      LE  +I    + + A   + D+ + +    V    VP    +
Sbjct: 90  LGGQTGLNMALELKNAGILEQYQIELLGTKLDAIEQAEDREQFRALMNVLGEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 HTLDEAFAFVETIGYPVIIRPAYTLGGTGGGIAYNDEDLAEIVASGLKYSPVTQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  A
Sbjct: 210 IAG-FKEVEYEVMRDSKDEAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNDYQMLRNSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LSIIRALGIEGGCNVQFALDAHSDQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  V+   KP        G   
Sbjct: 580 AIKEAGYEAIIMNNNPETVSTDFSTSDKLYFEPLTVEDVMHVVGLEKPKGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   DK     V      P+  +       +     
Sbjct: 640 INLAAALAERGVSIIGTTLEDMDRAEDRDKFEQTLVELGIPQPLGKTATSVDGAVAIARK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +L+++Y+ G EL    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLRYMQTAVKVNPKHPVLVDRYLTGKELEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +       +   +       +S  +     P  +P  + + +        + +   G+
Sbjct: 760 DGNDVYIPGIMEHIERAG---VHSGDSIAVYPPQTVPDHLKQRLIERTTSIAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F++      V+ LE+N       P ++ ++  P  
Sbjct: 817 LNIQFVWHKDD--VYVLEVNPRSSRTVPFLSKITGVPMA 853


>gi|258515564|ref|YP_003191786.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779269|gb|ACV63163.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 1074

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V                   I +D      V  VL   KPD     
Sbjct: 30  GTQACRALREEGLEVVLVNSNPATIMTDSNMADRIYIDPLTPEFVTKVLKKEKPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q     +LE   +    + + +   + D+   +S     +  +P    +
Sbjct: 90  LGGQVGLNMALQLAKSGVLEETGVQLLGTPLESIIKAEDREGFKSMMQSINEPIPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P V++P       G  ++     +     +    +  +Q+L+E+ 
Sbjct: 150 SSVEDAVKFAERVGFPLVVRPAYTLGGTGGGMVYNMAELKSTATRGIRHSIINQILVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+D         +     +              +    Y+ ++  +
Sbjct: 210 LVGWKEIEFEVMRDSMDNCITICSMENIDPMGIHTGDSIVVAPC-QTLSDKEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     +  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGVHGGCNVQYALDPDSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 89/290 (30%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG +   I         D D              V  +L + KP+       G   
Sbjct: 585 ALREAGIEAIIINNNPETVSTDFDTADRLYFEPMLPEDVLNILENEKPEGVIVQFGGQTA 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++        +   P   ++      +     
Sbjct: 645 INLAKPLENAGIKILGTSVENIDRAEDRERFDRLLSKLNIPRPAGNTVFSVTEAIGVADE 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +        +L+++Y+ G EL    + 
Sbjct: 705 IGYPVLVRPSYVLGGRAMEIVYNEIDLLNYMASAVKVTPEHPVLVDKYLCGKELEVDAIS 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   I   +        + +  +G+
Sbjct: 765 DGKDVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSDRIRGLLVDYTTRLAKELNVKGV 821

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P M+   G     L   ++
Sbjct: 822 INIQYVLHE--DQLYVLEVNPRSSRT----VPYMSKITGIPMVNLATKII 865


>gi|28897245|ref|NP_796850.1| carbamoyl phosphate synthase large subunit [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|153838433|ref|ZP_01991100.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|260366314|ref|ZP_05778766.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus K5030]
 gi|260876212|ref|ZP_05888567.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260897166|ref|ZP_05905662.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260902207|ref|ZP_05910602.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|31340007|sp|Q87SF3|CARB_VIBPA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|28805454|dbj|BAC58734.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|149748196|gb|EDM59055.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AQ3810]
 gi|308087977|gb|EFO37672.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308093037|gb|EFO42732.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308108468|gb|EFO46008.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308114738|gb|EFO52278.1| carbamoyl-phosphate synthase, large subunit [Vibrio
           parahaemolyticus K5030]
          Length = 1077

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTAMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|320540424|ref|ZP_08040074.1| putative carbamoyl-phosphate synthase large subunit [Serratia
           symbiotica str. Tucson]
 gi|320029355|gb|EFW11384.1| putative carbamoyl-phosphate synthase large subunit [Serratia
           symbiotica str. Tucson]
          Length = 1074

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPETADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +L    +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLTEFGVTMIGATADAIDKAEDRRRFDMAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTLEEALAVAAEVGFPCIIRPSFTMGGTGGGIAYNREEFEEICQRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELVDDI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVALEDVLEIVRIEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARELEAAGMPIIGTSPDAIDRAEDRERFQQVVNRLGLKQPANATVTTVEQAVEQAAS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L++++  D +E+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLNDAVEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  DI   +++        +  RG
Sbjct: 768 CDGECVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKDIQDIMRQQVAKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + KV+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNHKVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|307266588|ref|ZP_07548119.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
 gi|306918385|gb|EFN48628.1| D-alanine--D-alanine ligase [Thermoanaerobacter wiegelii Rt8.B1]
          Length = 250

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/187 (18%), Positives = 71/187 (37%), Gaps = 15/187 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           +  P   KP+ G  S GI              ++   +   G   LIE++++G E+T G+
Sbjct: 58  LKFPLFAKPISGRGSAGIDEENIIYDKDKLPQVVSKITDKIGQAALIEEFIEGKEVTVGI 117

Query: 182 MGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
           +G     V         +   +        N     P ++  ++ ++++  A   ++ + 
Sbjct: 118 IGYKHPQVLPLLEVGYNNVKTNTYEHKMFDNEIIKCPMEVSKEVEEKIKETALNIYKVLN 177

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----------IFPEMAAYAGYSFRELL 289
            +  +R D +        ++LE+N   G+T  S              MA  AG +  E +
Sbjct: 178 AKDFARIDMILS-KDNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGYMAKAAGLTRGEFI 236

Query: 290 LWMVEDA 296
             ++E A
Sbjct: 237 RKIIESA 243


>gi|117926298|ref|YP_866915.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1]
 gi|117610054|gb|ABK45509.1| carbamoyl-phosphate synthase large subunit [Magnetococcus sp. MC-1]
          Length = 1074

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      SV  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGYEVVLVNSNPATIMTDPELADRTYVEPITLASVTRIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G    +  +      +LE   +    +   A + + D+ R KQ +   G+ +     
Sbjct: 89  TMGGQTALNMALNLADAGVLEQYNVELIGASRDAISKAEDRERFKQAMDDIGLEMPKSGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + Q  +  P +I+P       G  +    +     + +  + +   ++L+E+
Sbjct: 149 AHSMEEAWEIQTEVGYPTIIRPSFTLGGTGGGIAYNSEEFEEIIRRGLAASPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +    LD   I     +F    +      +          +        
Sbjct: 209 SVLGWKEFEMEVVRDRLDNAIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAIHPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/266 (14%), Positives = 86/266 (32%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KPD       G        +     + I  T    + 
Sbjct: 612 DRLYFEPLTF---EDVMTIVDIEKPDGVIVQFGGQTPLKLAKRLEAAGVPIIGTTPEAID 668

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P        +  +     I  P V++P        + ++  
Sbjct: 669 VAEDRERFQVLLQKLGLRQPPNGIARSEQEAIREAEAIGFPVVVRPSYVLGGRAMEIVHD 728

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   +  +   +    +LI+ +  D IE+    + D    V    +   +       
Sbjct: 729 VKDLERYMRTAVQASPDHPVLIDHFLRDAIEIDVDCIADGKTAVVAGIMEHIEEAG---V 785

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  + LD+  E++R   +   A+  +G+    F        V+ LE+N +
Sbjct: 786 HSGDSACSLPPYSVGLDLINEIERQTKMLAAALEVKGLMNIQFAI--QKGAVYILEVNPR 843

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G  F +L   
Sbjct: 844 ASRT----VPFVSKATGVPFAKLAAR 865


>gi|281357004|ref|ZP_06243494.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
 gi|281316562|gb|EFB00586.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
          Length = 1069

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 97/303 (32%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFN 56
           SG     AL   G++V                     I+     S+  ++A  +PD    
Sbjct: 29  SGTQACKALRALGYEVVLANSNPATIMTDPGMADHTYIEPLTVDSIEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +      + A     D++  K+ ++  GVP+  S  
Sbjct: 89  NLGGQTALNLAISLHDGKILEKYGVQVIGVDLEAIKRGEDRIIFKETMNRLGVPMAKSEP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++   + +   + +  + +   Q+L+E+
Sbjct: 149 CYSVEEAEKIASELGYPVVLRPAYTMGGTGGGIVYNVEELREVVARGLAASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
              G       +                     +   + +S  V P     + + K++Q 
Sbjct: 209 CALG--WEELELEVVRDAKGNKITVCFIENVDPMGVHTGDSFCVAPMLTVPESVQKQLQD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A+    A+G  G +   F  +    ++  +EIN +   T  S     +   G+    + 
Sbjct: 267 YAYRIVDAVGVTGGTNVQFAHNREDGRIIVIEINPR---TSRSS-ALASKATGFPIASVS 322

Query: 290 LWM 292
             +
Sbjct: 323 TQL 325


>gi|313835192|gb|EFS72906.1| hypothetical protein HMPREF9621_02809 [Propionibacterium acnes
          HL037PA2]
 gi|314929164|gb|EFS92995.1| hypothetical protein HMPREF9607_00846 [Propionibacterium acnes
          HL044PA1]
 gi|314970886|gb|EFT14984.1| hypothetical protein HMPREF9622_01951 [Propionibacterium acnes
          HL037PA3]
          Length = 69

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 19/54 (35%), Positives = 30/54 (55%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA 54
          + VL GG+S +R++SL SG+  A AL   G +V + D+D S+   L   +    
Sbjct: 5  VVVLAGGLSHQRDISLKSGRTVAQALRRVGHEVVEADIDSSLIETLRCRRVSHV 58


>gi|169831463|ref|YP_001717445.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Desulforudis audaxviator MP104C]
 gi|226700927|sp|B1I4M8|CARB_DESAP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169638307|gb|ACA59813.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Desulforudis audaxviator MP104C]
          Length = 1082

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 94/300 (31%), Gaps = 32/300 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V  I+ +                       V  V++  +PD     
Sbjct: 30  GTQACRALREEGLEVVLINSNPATIMTDANMADRIYIEPLTPEFVAKVISQERPDALLPT 89

Query: 58  LHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111
           L G  G +   Q     IL+   +    + + +   + D+   K +       VP    I
Sbjct: 90  LGGQTGLNLAKQVADAGILDQYGVRLLGTPLESIKRAEDREHFKNMCLEIGEPVPESSII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  V   +  +    ++  + +   Q+L+E+ 
Sbjct: 150 SDVDAAVAFARKIGYPVVVRPAYTLGGTGGGVAFSEDELREIAVRGLTMSIIHQVLVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   +           +     +                 + ++ ++  +
Sbjct: 210 VLGWKEIEYEVMRDAAGNCITICSMENIDPMGIHTGDSIVVAPTQTLSDRE-HQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGVEGGCNVQFALDPESYDYYVIEVN--PRLSRSS--ALASKATGYPIAKVATK 324



 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 30/294 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G K   I         D D              V  +L   KPD       G   
Sbjct: 595 ALKEQGVKAIIINNNPETVSTDFDTADRLYFEPLVPEDVMNILHKEKPDGVIVQFGGQTA 654

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +           I  T    +  A   ++            P   +             
Sbjct: 655 INLARPVEKAGFNILGTSVADIDRAEDRERFDQLVAELGIPRPPGGTGFSVEEAQRIAEQ 714

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   Q +   +  +        +L+++Y+ G EL    + 
Sbjct: 715 VGFPVLVRPSYVLGGRAMEIVYNSQELLEYMADAVRVTPKHPVLVDKYLLGKELEVDAVC 774

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +           +     P  +  +I +++        +A+  RG+
Sbjct: 775 DGETVLVPGIMEHVERAGIHSG---DSIAVFPPQTLTPEIKEQLFEYTQQIARALKIRGL 831

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+      +VF LE+N +   T     P ++   G     L   +   A+
Sbjct: 832 VNIQFVLHE--GRVFVLEVNPRSSRT----VPYLSKVTGIPMVNLATRICLGAT 879


>gi|330814383|ref|YP_004358622.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
 gi|327487478|gb|AEA81883.1| D-alanine--D-alanine ligase [Candidatus Pelagibacter sp. IMCC9063]
          Length = 370

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/287 (19%), Positives = 104/287 (36%), Gaps = 16/287 (5%)

Query: 20  KACASALEDAGFKVSQI-DVD-RSVGLVLAHLKPDLAFN-VLHGNFGEDGLV-QAILELL 75
            +  + L  A +    I ++   +    LA  KPDL F+ V +  F E  +     LE  
Sbjct: 58  HSIFNILSSA-YNCVVITEIKSENDLKQLAIRKPDLVFSGVKYFTFNERIIWLNDYLETH 116

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPL 133
            I Y  SG  A     DK R+K+++    +               Q  +    P  +KP+
Sbjct: 117 GISYIASGREALEYEHDKSRAKEIMQKADIKTADFFTTEPGEYPDQESLPVKFPLFVKPV 176

Query: 134 KGGSSLGIIVIKKDQSI--PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
            GG S GI               +           L+E ++ G E + G++ D+      
Sbjct: 177 TGGDSRGIDFKSVVHDFKSFEAKVLDIKMKQKSTSLVETFLSGKEYSVGILQDSFSGTLN 236

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAK------IPLDIYKEVQRLAFLAHQAIGCRGISR 245
               +         +  L+       +         +I+ ++  LA  +  A+G + + R
Sbjct: 237 AMPVEIMVDKNINGHCILDFDIKKNDEEVVIAVTDKEIFNQLCNLAKKSFIALGGKSLGR 296

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            D   + L  +  ++E N+ PG++    F         S+ E++L +
Sbjct: 297 IDIKMNHL-NEPHFIEANLMPGLSKGYFFRSCFLNLNMSYEEMILLI 342


>gi|325276150|ref|ZP_08141957.1| carbamoyl phosphate synthase large subunit [Pseudomonas sp. TJI-51]
 gi|324098726|gb|EGB96765.1| carbamoyl phosphate synthase large subunit [Pseudomonas sp. TJI-51]
          Length = 961

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL D G++   +         D D S  L    L  +    V           H  G   
Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGS 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +   +  EV+         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKGVQDEVREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876


>gi|296313298|ref|ZP_06863239.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296840205|gb|EFH24143.1| carbamoyl-phosphate synthase, large subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 1071

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALHEEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R K+ +   G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLAKYNVELIGATEDAIDKAEDRGRFKEAMEKIGLSCPKSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 582 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 642 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   +    +L++ +  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMQIVHSAEELQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D+   V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 762 SDSKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 858


>gi|148549791|ref|YP_001269893.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida F1]
 gi|148513849|gb|ABQ80709.1| carbamoyl-phosphate synthase large subunit [Pseudomonas putida F1]
          Length = 1055

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 11  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 70

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 71  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 130

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 131 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 190

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 191 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 251 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 306

Query: 291 WM 292
            +
Sbjct: 307 KL 308



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL D G++   +         D D S  L    L  +    V           H  G   
Sbjct: 569 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 628

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 629 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGS 688

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 689 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 748

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  EV+         +G  G
Sbjct: 749 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 805

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 806 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 858


>gi|167035715|ref|YP_001670946.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida
           GB-1]
 gi|166862203|gb|ABZ00611.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas putida
           GB-1]
          Length = 1073

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL + G++   +         D D S  L    L  +    V           H  G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      S   P   ++      + +   
Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGG 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  EV+         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876


>gi|170719895|ref|YP_001747583.1| carbamoyl phosphate synthase large subunit [Pseudomonas putida
           W619]
 gi|169757898|gb|ACA71214.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas putida
           W619]
          Length = 1073

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL + G++   +         D D S  L    L  +    V           H  G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAIRAAGG 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  D+  +V+         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKDVQDQVRDQVRKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876


>gi|104780016|ref|YP_606514.1| carbamoyl phosphate synthase large subunit [Pseudomonas entomophila
           L48]
 gi|95109003|emb|CAK13699.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           entomophila L48]
          Length = 1073

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL + G++   +         D D S  L    L  +    V           H  G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLLQPPNATVRSEEEAISAAGG 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  EV+         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSQEVQDEVRVQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876


>gi|24986476|gb|AAN70295.1|AE016670_5 carbamoyl-phosphate synthase, large subunit [Pseudomonas putida
           KT2440]
 gi|313500632|gb|ADR61998.1| CarB [Pseudomonas putida BIRD-1]
          Length = 1076

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 32  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 91

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 92  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 151

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 152 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 211

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 212 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 271

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 272 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 327

Query: 291 WM 292
            +
Sbjct: 328 KL 329



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL + G++   +         D D S  L    L  +    V           H  G   
Sbjct: 590 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 649

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      S   P   ++      + +   
Sbjct: 650 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGS 709

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 710 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 769

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  EV+         +G  G
Sbjct: 770 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 826

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 827 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 879


>gi|161378120|ref|NP_746831.2| carbamoyl phosphate synthase large subunit [Pseudomonas putida
           KT2440]
 gi|38257481|sp|Q88DU6|CARB_PSEPK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1073

 Score = 68.0 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      SV  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPIKWQSVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 95/295 (32%), Gaps = 36/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------H--GNFG 63
           AL + G++   +         D D S  L    L  +    V           H  G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVCRVEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      S   P   ++      + +   
Sbjct: 647 LKLARALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLSLLQPPNATVRSEEEAIRAAGS 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYELDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +  ++  EV+         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLSKEVQDEVRVQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAAY-AGYSFREL 288
           +            K++ +E+N       P ++     S+    A   AG + +EL
Sbjct: 824 LMNVQLAL--QGDKIYVIEVNPRASRTVPFVSKCIGTSLAMIAARVMAGKTLKEL 876


>gi|239509132|gb|ACR81555.1| VtsA [Listonella anguillarum]
          Length = 384

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 121/341 (35%), Gaps = 53/341 (15%)

Query: 1   MAVLMGGISSEREVSL-------SS-------GKACASALEDAGFKVSQI---DVDRSVG 43
           +AV+ GG   E+E S         S           A+AL ++ F+  ++   D+  ++ 
Sbjct: 20  IAVIHGGD-KEQEGSFIFENLSPRSTKTYAPVAHDIANALRESNFQFVEVLAEDI--NLA 76

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVS 101
             L     DL      G  G D +    + LE+L +PY     + + +  +K   K  + 
Sbjct: 77  QCLKDKGIDLVITNSGGLQGFDSMCHLPSTLEMLGVPYVGHSPMTAGILDNKHLFKHEIK 136

Query: 102 SCGVPVCPSILVNRFTMD-----------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + G+P  P I +                  +      +++KP+ G +S+ +  + K   +
Sbjct: 137 AAGLPTAPFITIGIDEHFEDVAKQDAIDQIEAQFKDGFIVKPVSGRASIHVYPVFKRNDL 196

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTC-------------GVMGDASLDVTEIAVPKS 197
              +++      G+ ++IE ++ G E                              V  +
Sbjct: 197 -AGVVEHVRQATGNTVMIEPFLGGREFVVAVAGEYVFKEGKLTQSEMPMAFSITERVLDA 255

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           D   +        +   L A     +  ++  +    ++ +G + + R D   D     +
Sbjct: 256 DEPIFTSMDVKPITQDRLVAVNEEGLRNQLALIGQKIYRLLGLQTLVRVDLRMDKEGN-L 314

Query: 258 FWLEINVQPGM-----TPVSIFPEMAAYAGYSFRELLLWMV 293
           + LE N +P +       VS+     A  G  + +L+  +V
Sbjct: 315 YVLETNPKPDLKRPEGEKVSLVCHDLAREGMDYTDLVQSLV 355


>gi|147781717|emb|CAN69740.1| hypothetical protein VITISV_017584 [Vitis vinifera]
          Length = 1204

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D +            V  VL   +PD    
Sbjct: 110 SGTQACKALKEEGYEVVLINSNPATIMTDPDMADKTYITPMTPXLVEQVLEKERPDAILP 169

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + D+   KQ + + GV   PS +
Sbjct: 170 TMGGQTALNLAVALAESGVLEKYGVELIGAKLEAIKKAEDRELFKQAMENIGVKTPPSGI 229

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +        P +I+P       G  +    +          + +   Q+L+E
Sbjct: 230 GTTLDECMEIANSIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 289

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 290 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 349

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 350 SVAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 405

Query: 290 LWM 292
             +
Sbjct: 406 AKL 408


>gi|294142076|ref|YP_003558054.1| carbamoyl-phosphate synthase large subunit [Shewanella violacea
           DSS12]
 gi|293328545|dbj|BAJ03276.1| carbamoyl-phosphate synthase, large subunit [Shewanella violacea
           DSS12]
          Length = 1072

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +   + +L+   +    +   A   + D+ R  + + + G+       
Sbjct: 89  TMGGQTALNCALELESKGVLKEFNVEMIGATADAIDKAEDRGRFDKAMKAIGLECPRAGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHTMAEAFAVQETLGFPCIIRPSFTMGGSGGGIAYNIEEFEEICTQGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQKAIQRLEMKQPENETVTTVESAIISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  D+   ++         +G  G
Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSEDVQNRMREQVGKLAIELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|312144093|ref|YP_003995539.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311904744|gb|ADQ15185.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 1072

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                      S+  +L   KPD    
Sbjct: 29  SGSQACRALKEEGIEVVLVNSNPATIMTDENMADRVYIEPLTLESIIEILRKEKPDGLIP 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +      +      E+  T    +  A   +  +         V     
Sbjct: 89  TLGGQIALNLAIDLAESKILDELDVELLGTPIKTIEKAEDRNTFKELMDQIGEPVLDSKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P +++P       G  V    + +    ++    +   Q+LIE+
Sbjct: 149 AENVEQAAEIAKKIGFPVIVRPAYTMGGTGGGVADNLEELKEITIRGFKHSLIGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +    Y+  +  
Sbjct: 209 SIKGW-KEIEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDKEYQMFRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     +  DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALGIEGGCNVQYALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVSA 323

Query: 291 WM 292
            +
Sbjct: 324 RI 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 94/294 (31%), Gaps = 32/294 (10%)

Query: 21  ACASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           +  SA  L + G++   ++                         V  ++ + KP+     
Sbjct: 579 SVHSAWSLHEEGYESIIVNNNPETVSTDFDTSDRLYFEPLTKEDVMHIIENEKPEGVIVQ 638

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
             G    +   +   E + I  T    +  A   D+            P   +       
Sbjct: 639 FGGQTAINLAAKLADEGVNILGTSVDSIDLAEDRDRFIKLLNELDIPTPAGKTAASLLEA 698

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P +++P        + V+  ++ +   +  +   +    +LI++Y+ G E+
Sbjct: 699 EKIAAEIKYPVLVRPSYVLGGRAMEVVYNEKELEEYMKNAVKVSPDRPVLIDKYLTGTEV 758

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +     P  +   I ++++  +    Q 
Sbjct: 759 EVDAISDGETVILPGIMEHVERAG---VHSGDSIAVYPPHNLSEKIKEKIEEYSIKISQK 815

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    ++ +    KV+ +E+N +   T     P ++   G +  +L   
Sbjct: 816 LNVEGVINIQYVVN--DNKVYVIEVNPRSSRT----IPYLSKVTGVAMVDLATK 863


>gi|163790401|ref|ZP_02184832.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7]
 gi|159874305|gb|EDP68378.1| carbamoyl-phosphate synthase large subunit [Carnobacterium sp. AT7]
          Length = 1059

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVSRILRKERPDAIVPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  R+     +  VP    +
Sbjct: 90  LGGQTGLNMAMELANSGILEELDIELLGTKLSAIDQAEDRDLFRNLMNELNEPVPESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P +++P       G  +   ++ +   +      +   Q L+E  
Sbjct: 150 HTVSEAIVFAGKVGFPVIVRPAFTLGGTGGGICDNEEELTETVANGLKLSPVSQCLVEIS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENFDPVGVHTGDSIVFAPTQTLTDKEHQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVMHVIHLEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + +  T    L  A + D         +   P+  +       +    
Sbjct: 639 AINLAEPLTKMGVTLLGTRVEDLDRAENRDLFEQALNELNVPQPLGDTATTAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I+ P +++P       G+ ++     +   +  +   +    +LI++Y+ G E+    +
Sbjct: 699 RINYPVLVRPSYVLGGRGMQIVDTQPDLENYMRNAVKASPEHPVLIDRYLVGKEVEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I + +          + C G
Sbjct: 759 CDGKSVLIPGIMEHIERSG---VHSGDSMAVYPPQSLSKEIQETIVDYTTRLALGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    +  V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNVQFVIHEDT--VYVIEVNPRASRT----VPFLSKVTGIPMAQVATKAI 860


>gi|91226825|ref|ZP_01261478.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus
           12G01]
 gi|254229693|ref|ZP_04923103.1| carbamoyl-phosphate synthase, large subunit [Vibrio sp. Ex25]
 gi|262395247|ref|YP_003287101.1| carbamoyl-phosphate synthase large chain [Vibrio sp. Ex25]
 gi|269967374|ref|ZP_06181434.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus
           40B]
 gi|91188956|gb|EAS75240.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus
           12G01]
 gi|151937814|gb|EDN56662.1| carbamoyl-phosphate synthase, large subunit [Vibrio sp. Ex25]
 gi|262338841|gb|ACY52636.1| carbamoyl-phosphate synthase large chain [Vibrio sp. Ex25]
 gi|269827962|gb|EEZ82236.1| carbamoyl-phosphate synthase large subunit [Vibrio alginolyticus
           40B]
          Length = 1077

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.9 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVDRLGLLQPENATVTTMEQAVEKSKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F        V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNDVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|84489992|ref|YP_448224.1| hypothetical protein Msp_1200 [Methanosphaera stadtmanae DSM 3091]
 gi|84373311|gb|ABC57581.1| CarB [Methanosphaera stadtmanae DSM 3091]
          Length = 1061

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 94/300 (31%), Gaps = 30/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L +   +   +         D+D              V  ++   + D    
Sbjct: 29  SGSQACKSLREENIETILVNSNPATIQTDIDSADKVYVEPLTAEVVAKIIEKEQVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          L+ + +  +    +      D         +  +P C ++ 
Sbjct: 89  TMGGQTGLNIAIDLNKMGALDGIRVLGSPIKTINDVEDRDLFAEFMERLNEPIPKCHAVN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++   I  P +++P       G  +    +     +      +  +Q+LI++ V
Sbjct: 149 SLEEAFEAVEDIGYPVIVRPAFTLGGTGGGIANNKKEFEEIVNHGLDMSFINQVLIDESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G             + + I V   +       ++  +        +  +  + ++  + 
Sbjct: 209 LGWAEF-EYEVMRDKNDSCIIVCNMENIDPMGIHTGESIVVAPTQTLSDEDNQRLRNASI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+G RG     F   P +++   +E+N  P ++  S     +   GYS  ++   +
Sbjct: 268 KIIRALGIRGGCNIQFAVHPETKEYKVIEVN--PRVSRSS--ALASKATGYSIAKVSSKI 323


>gi|323442294|gb|EGA99924.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           O46]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|303256866|ref|ZP_07342880.1| carbamoyl-phosphate synthase, large subunit [Burkholderiales
           bacterium 1_1_47]
 gi|330998885|ref|ZP_08322612.1| carbamoyl-phosphate synthase, large subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|302860357|gb|EFL83434.1| carbamoyl-phosphate synthase, large subunit [Burkholderiales
           bacterium 1_1_47]
 gi|329576099|gb|EGG57618.1| carbamoyl-phosphate synthase, large subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 1074

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56
           SG     AL + G+KV  ++                    + + V   ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPQTADVTYIEPITKEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +     +LE   I    +   A   + D+++ K+ +   G+    S +
Sbjct: 89  TMGGQTALNCAMELAKSGVLEKYNIELIGASPEAIEKAEDRLKFKEAMDKIGLSSARSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AYSLDDALKVQAKIGFPAIIRPSFTLGGSGGGIAYNMEEFIQICTRGLELSPTHELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVDTGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 89/283 (31%), Gaps = 32/283 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP+       G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIIDVEKPEGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    + +A   ++ +          P   +       +     
Sbjct: 642 LKLARALEANGVNIIGTSPDSIDAAEDRERFQHLLQNLGLHQPPNRTARTEEEAIRLADE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++     +   + ++   +    +L+++++D  +E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMDIVHDRSELERYMREAIKVSFDSPVLLDRFLDDAVEMDVDAV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +   + +EV+R      +A+   G
Sbjct: 762 SDGKEVRIGGVMQHIEQAG---VHSGDSACSIPPYSLDPALVEEVKRQTREMARALNVVG 818

Query: 243 ISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +    F          ++F LE+N +   T     P ++   G
Sbjct: 819 LMNVQFAIQHAFSDHPEIFVLEVNPRASRT----VPFVSKSTG 857


>gi|302332807|gb|ADL23000.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|283470413|emb|CAQ49624.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDEIATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|283770264|ref|ZP_06343156.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus H19]
 gi|283460411|gb|EFC07501.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus H19]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|258423754|ref|ZP_05686640.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9635]
 gi|282916452|ref|ZP_06324214.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|257845986|gb|EEV70014.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9635]
 gi|282319892|gb|EFB50240.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus D139]
 gi|298694496|gb|ADI97718.1| carbamoyl-phosphate synthase small chain [Staphylococcus aureus
           subsp. aureus ED133]
 gi|323440977|gb|EGA98684.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           O11]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|253731820|ref|ZP_04865985.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
 gi|253724419|gb|EES93148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH959]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|49486042|ref|YP_043263.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MSSA476]
 gi|57651772|ref|YP_186078.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87160076|ref|YP_493793.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88194909|ref|YP_499709.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|151221326|ref|YP_001332148.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. Newman]
 gi|161509376|ref|YP_001575035.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|221141993|ref|ZP_03566486.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. JKD6009]
 gi|253733559|ref|ZP_04867724.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257425256|ref|ZP_05601681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257427916|ref|ZP_05604314.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430549|ref|ZP_05606931.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257433310|ref|ZP_05609668.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257436152|ref|ZP_05612199.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|258452500|ref|ZP_05700506.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A5948]
 gi|262048106|ref|ZP_06020993.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           D30]
 gi|262051838|ref|ZP_06024054.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           930918-3]
 gi|282910775|ref|ZP_06318578.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282913978|ref|ZP_06321765.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282918900|ref|ZP_06326635.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|282919985|ref|ZP_06327714.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9765]
 gi|282924023|ref|ZP_06331699.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|284024127|ref|ZP_06378525.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 132]
 gi|293501011|ref|ZP_06666862.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|293509970|ref|ZP_06668678.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|293526558|ref|ZP_06671243.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|294848196|ref|ZP_06788943.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754]
 gi|297208153|ref|ZP_06924584.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|304381234|ref|ZP_07363887.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|60389608|sp|Q6GA10|CARB_STAAS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|81859599|sp|Q5HGM9|CARB_STAAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122539724|sp|Q2FZ72|CARB_STAA8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|123486238|sp|Q2FHN5|CARB_STAA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|172048850|sp|A6QGA4|CARB_STAAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081835|sp|A8Z3P0|CARB_STAAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49244485|emb|CAG42914.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57285958|gb|AAW38052.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus COL]
 gi|87126050|gb|ABD20564.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202467|gb|ABD30277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|150374126|dbj|BAF67386.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|160368185|gb|ABX29156.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Staphylococcus aureus subsp. aureus USA300_TCH1516]
 gi|253728613|gb|EES97342.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus TCH130]
 gi|257271713|gb|EEV03851.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257274757|gb|EEV06244.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278677|gb|EEV09296.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus 68-397]
 gi|257281403|gb|EEV11540.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus E1410]
 gi|257284434|gb|EEV14554.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M876]
 gi|257859718|gb|EEV82560.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A5948]
 gi|259160239|gb|EEW45267.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           930918-3]
 gi|259163672|gb|EEW48227.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           D30]
 gi|269940695|emb|CBI49076.1| putative carbamoyl-phosphate synthase,pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus TW20]
 gi|282313995|gb|EFB44387.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C101]
 gi|282316710|gb|EFB47084.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C427]
 gi|282322046|gb|EFB52370.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M899]
 gi|282325380|gb|EFB55689.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282594701|gb|EFB99685.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9765]
 gi|290920630|gb|EFD97693.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M1015]
 gi|291096016|gb|EFE26277.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 58-424]
 gi|291466914|gb|EFF09432.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus M809]
 gi|294824996|gb|EFG41418.1| carbamoyl-phosphate synthase [Staphylococcus aureus A9754]
 gi|296887396|gb|EFH26298.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|302751025|gb|ADL65202.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340217|gb|EFM06158.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312438420|gb|ADQ77491.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|315198440|gb|EFU28769.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS01]
 gi|320140982|gb|EFW32829.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MRSA131]
 gi|320144303|gb|EFW36069.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MRSA177]
 gi|329313871|gb|AEB88284.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus T0131]
 gi|329724741|gb|EGG61246.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21189]
 gi|329728758|gb|EGG65179.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21193]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|49483366|ref|YP_040590.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MRSA252]
 gi|282903756|ref|ZP_06311644.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|282905520|ref|ZP_06313375.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908496|ref|ZP_06316326.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|283957944|ref|ZP_06375395.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295427688|ref|ZP_06820320.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297591353|ref|ZP_06949991.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|60389633|sp|Q6GHN2|CARB_STAAR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|49241495|emb|CAG40181.1| putative carbamoyl-phosphate synthase, pyrimidine-specific, large
           chain [Staphylococcus aureus subsp. aureus MRSA252]
 gi|282327558|gb|EFB57841.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282330812|gb|EFB60326.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282595374|gb|EFC00338.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus C160]
 gi|283790093|gb|EFC28910.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus A017934/97]
 gi|295128046|gb|EFG57680.1| carbamoyl-phosphate synthase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|297576239|gb|EFH94955.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315194089|gb|EFU24482.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS00]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHNFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|21282815|ref|NP_645903.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MW2]
 gi|300912233|ref|ZP_07129676.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|22095489|sp|P58940|CARB_STAAW RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21204253|dbj|BAB94951.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus MW2]
 gi|300886479|gb|EFK81681.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus TCH70]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKTATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + I   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGINIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|15924193|ref|NP_371727.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|15926786|ref|NP_374319.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus N315]
 gi|148267694|ref|YP_001246637.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|150393752|ref|YP_001316427.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156979524|ref|YP_001441783.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|253315561|ref|ZP_04838774.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|255005990|ref|ZP_05144591.2| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257795741|ref|ZP_05644720.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9781]
 gi|258415965|ref|ZP_05682235.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           A9763]
 gi|258419712|ref|ZP_05682679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9719]
 gi|258438754|ref|ZP_05689907.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A9299]
 gi|258444540|ref|ZP_05692869.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A8115]
 gi|258447627|ref|ZP_05695771.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6300]
 gi|258449469|ref|ZP_05697572.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6224]
 gi|258454848|ref|ZP_05702812.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A5937]
 gi|269202817|ref|YP_003282086.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282892689|ref|ZP_06300924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A8117]
 gi|282927543|ref|ZP_06335159.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A10102]
 gi|295407141|ref|ZP_06816942.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819]
 gi|296275224|ref|ZP_06857731.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245973|ref|ZP_06929832.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796]
 gi|54036831|sp|P63740|CARB_STAAN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|54040879|sp|P63739|CARB_STAAM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|167006449|sp|A7X1F4|CARB_STAA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081833|sp|A6U122|CARB_STAA2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|189081834|sp|A5IS88|CARB_STAA9 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|13701002|dbj|BAB42298.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus N315]
 gi|14246973|dbj|BAB57365.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus Mu50]
 gi|147740763|gb|ABQ49061.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus JH9]
 gi|149946204|gb|ABR52140.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus JH1]
 gi|156721659|dbj|BAF78076.1| carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           subsp. aureus Mu3]
 gi|257789713|gb|EEV28053.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9781]
 gi|257839301|gb|EEV63775.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           A9763]
 gi|257844297|gb|EEV68679.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A9719]
 gi|257848013|gb|EEV72006.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A9299]
 gi|257850033|gb|EEV73986.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A8115]
 gi|257853818|gb|EEV76777.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6300]
 gi|257857457|gb|EEV80355.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A6224]
 gi|257863231|gb|EEV85995.1| carbamoyl-phosphate synthase large subunit [Staphylococcus aureus
           A5937]
 gi|262075107|gb|ACY11080.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus ED98]
 gi|282590546|gb|EFB95623.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A10102]
 gi|282764686|gb|EFC04811.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           A8117]
 gi|285816885|gb|ADC37372.1| Carbamoyl-phosphate synthase large chain [Staphylococcus aureus
           04-02981]
 gi|294967994|gb|EFG44022.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8819]
 gi|297177137|gb|EFH36391.1| carbamoyl-phosphate synthase [Staphylococcus aureus A8796]
 gi|312829596|emb|CBX34438.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130994|gb|EFT86978.1| carbamoyl phosphate synthase large subunit [Staphylococcus aureus
           subsp. aureus CGS03]
 gi|329727466|gb|EGG63922.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus aureus
           subsp. aureus 21172]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +L+   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLQDNNVQLLGTELTSIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 NTVEQAFKFKEQVGYPLIVRPAFTMGGTGGGICHNDEELHEIVSNGLHYSPATQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   KP        G   
Sbjct: 580 AIQKAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   S       + +   
Sbjct: 640 INLADKLAKHGVKILGTSLENLNRAEDRKEFEALLRKINVPQPQGKSATSPEEALANAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEDELATLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRTVPFLSKITDIPMA 853


>gi|258645189|ref|ZP_05732658.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM
           15470]
 gi|260402538|gb|EEW96085.1| carbamoyl-phosphate synthase, large subunit [Dialister invisus DSM
           15470]
          Length = 1067

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/258 (13%), Positives = 87/258 (33%), Gaps = 16/258 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KP+       G    +         + I  + +  +  A   ++  +   
Sbjct: 615 EDVLEIIEKEKPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P    +      M+    +  P +++P        + ++     +   L ++  
Sbjct: 675 QLGIARPKGCLVESVEEAMEKTQDLDYPLIVRPSYVLGGRAMQIVYDQAELRQYLKEAVV 734

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +H   +LI+QY+ G E+    + D         + + +       +S  +     P  +
Sbjct: 735 ASHEHPVLIDQYMVGREVEVDAISDGIDVCIPGIMEQIERSG---VHSGDSIAVYPPQHL 791

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +  + +        +A+  +G+    F+   +  KV+ +E+N +   T     P M+ 
Sbjct: 792 TQETIETLTDYTRKIARAMNVKGLINIQFIV--VGNKVYVIEVNPRASRT----VPFMSK 845

Query: 280 YAGYSFRELLLWMVEDAS 297
             G +       MVE A+
Sbjct: 846 ITGIN-------MVEHAT 856



 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  +         DVD              V  V+   +PD     
Sbjct: 29  GTQACRSLKEEGIEVVLVNSNPSTIMTDVDIADRVYIEPITLPFVTEVIKKERPDALLAT 88

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V       LE   +    S + A   + D+   +         VP     
Sbjct: 89  LGGQVGLNMAVDLSEAGVLEKYGVELLGSSLHAIKHAEDRELFKRAMNEIHQPVPESGIF 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +I+P       G  +      +     +    +  +Q+L+E+ 
Sbjct: 149 DELEPAVTFADKIGYPVIIRPAYTLGGTGGGIAHDRYEMEEISNRGIKLSPINQILVERS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 209 VAGW-KEVEFEVMRDSADNCIIVCAMENIDPVGVHTGDSIVVAPTQTLTDGQYQMLRTAS 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     +  D  +   + +E+N  P ++  S     +   GY   ++   
Sbjct: 268 LDIIRYLQIEGGCNVQYALDTKTNNYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 323

Query: 292 M 292
           +
Sbjct: 324 I 324


>gi|56460088|ref|YP_155369.1| carbamoyl phosphate synthase large subunit [Idiomarina loihiensis
           L2TR]
 gi|56179098|gb|AAV81820.1| Carbamoylphosphate synthase large subunit [Idiomarina loihiensis
           L2TR]
          Length = 1074

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAVLP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          D         +E+   ++  +  A + D+            P    
Sbjct: 89  TMGGQTALNCALDLDRHGVLERYKVEMIGANADAIDKAENRDRFDKAMKAIGLETPNAEM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSLDEAFDVLSRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQLMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVNPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESITLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A    + ++         P   ++      +     
Sbjct: 647 LKLARELEANGVPIIGTSPDAIDRAEDRARFQTAVRRLGLKQPENSTVTGFNEALTEAKR 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   L  +   ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEADLQRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  ++  + P  +   I  +++         +   G
Sbjct: 767 CDGTDVLIGGIMQHIEEAG---VHSGDSACSLPPYSLSDIIQAQLREQMRKLAFELNVNG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNAQFAV--KEDEIYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|85712941|ref|ZP_01043981.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica
           OS145]
 gi|85693247|gb|EAQ31205.1| carbamoyl-phosphate synthase large subunit [Idiomarina baltica
           OS145]
          Length = 1074

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIERERPDAILP 88

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          D         +E+   ++  +  A + D+            P    
Sbjct: 89  TMGGQTALNCALDLDRHGVLDRFKVEMIGANADAIDKAENRDRFDKAMKKIGLETPNAEM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAFDVLDRLGFPCIIRPSFTMGGSGGGIAYNREEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKSDNCIIVCTIENFDPMGIHTGDSITVAPAQTLTDKEFQLMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGLNPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEQPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  +   ++ ++         P   ++      +     
Sbjct: 647 LKLARALEANGVPIIGTSPDAIDRSEDRERFQAAVNRLKLKQPENSTVTGISEALTEAKR 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +   L  +   ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLTRYLTDAVKVSNDAPVLLDRFLDNAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   I  +++         +  +G
Sbjct: 767 CDGEDVLIGGIMQHIEEAG---VHSGDSACSLPPYSLSDIIQAQLREQIRKLAFELNVKG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNAQFAV--KDDEIYLIEVNPRAART----VPFVSKATGVPLAKVAAR 866


>gi|58201633|gb|AAW66893.1| vancomycin resistance protein C1 [Enterococcus gallinarum]
          Length = 235

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 60/219 (27%), Positives = 107/219 (48%), Gaps = 11/219 (5%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
           PD+ F VLHG +GEDG +Q +LEL+ +PY    + ASAL M+K    Q+  + G+     
Sbjct: 20  PDVLFPVLHGKYGEDGCIQGLLELMNLPYVGCHVAASALCMNKWLLHQLADTMGIASAPT 79

Query: 108 ---CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                                 P  IKP + GSS GI  +    ++   L  ++++ +G 
Sbjct: 80  LLLSRYENDPATIDRFIQDHGFPIFIKPNEAGSSKGITKVTDKTALHSAL--TTAFAYGS 137

Query: 165 QLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            +LI++ + GIE+ CG+      ++   +       F+ +E KY  +++T  +PA +PL 
Sbjct: 138 TVLIQKAIAGIEIGCGILGNEQLTIGACDAISLVDGFFDFEEKYQLISATITVPAPLPLA 197

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           +  +++  A L ++ +G  G++R DF        ++  E
Sbjct: 198 LESQIKEQAQLLYRNLGLTGLARIDFFVTNQ-GAIYLNE 235


>gi|284925554|gb|ADC27906.1| carbamoyl-phosphate synthase large subunit [Campylobacter jejuni
           subsp. jejuni IA3902]
          Length = 1089

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----IPFVSKATGIPLAKVATR 868


>gi|307153024|ref|YP_003888408.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. PCC
           7822]
 gi|306983252|gb|ADN15133.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7822]
          Length = 1082

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  VLA  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLINSNPASIMTDPEMANRTYIEPLTPEMVEKVLAKERPDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    + + A  ++ D++  K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         +     P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASTLEEAKAIAVQIGSYPLIIRPAFTLGGTGGGISYNQEEFEVMAQYGLDCSPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+   V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SKAIIREIGVETGGSNIQFAVNPVDGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 80/293 (27%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF- 62
           AL   GF+   ++                         V  ++    P+       G   
Sbjct: 587 ALSAEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPEGVIVQFGGQTP 646

Query: 63  -------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
                   +           +I  T    +  A   ++        +   P         
Sbjct: 647 LKLAVPLQKYLDSPDCPVKTKIWGTSPDSIDIAEDRERFEKILWELNITQPPNGIARSYD 706

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +     I  P V++P        + ++  DQ +   +  +        +LI+++++  
Sbjct: 707 EALAVAKRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN- 765

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V   A      I     +       +S  ++  V    +   + + ++       
Sbjct: 766 AIEVDVDTLADATGKSIIGGIMEHIEEAGVHSGDSACSVPFTTLTPTVLETIRNWTSQLA 825

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           Q +   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 826 QVLKVVGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872


>gi|86149694|ref|ZP_01067924.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839962|gb|EAQ57221.1| carbamoyl-phosphate synthase, large subunit [Campylobacter jejuni
           subsp. jejuni CF93-6]
          Length = 1089

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGAGSGVVYNMDEFKELTNTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 85/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + + + +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFAL--HNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----IPFVSKATGIPLAKVATR 868


>gi|302871664|ref|YP_003840300.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574523|gb|ADL42314.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1077

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNSVKILGTSMESIDAAEDRDKFLNLLKDLNIPYPPGGAAYSLEDAIKVAEK 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIVDYTIKLARALRVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   KP     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKEKPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|42057|emb|CAA36869.1| ddl protein (partial) (AA 1-41) [Escherichia coli]
          Length = 41

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/37 (48%), Positives = 25/37 (67%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID 37
          +AVL+GG S+EREVSL+SG A  + L + G     +D
Sbjct: 5  IAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVD 41


>gi|302671038|ref|YP_003830998.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio
           proteoclasticus B316]
 gi|302395511|gb|ADL34416.1| carbamoyl-phosphate synthase large subunit CarB2 [Butyrivibrio
           proteoclasticus B316]
          Length = 1082

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 96/296 (32%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRSLGYEIVLVNSNPATIMTDPEMADKTYIEPLNVERVAAVIEKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +     IL+   +      + A     D+   K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELYKAGILDKFNVKVIGVQVDAIERGEDRTEFKKTMDMLGIEMARSKA 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 CYSIEEALAEADELGYPVVLRPAYTMGGAGGGLVYNKEELQTVCARGLQASIIHQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +     +         +       ++  +        I  D+ KE+QR 
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENVDP-VGVHTGDSFCTAPMLTISEDLQKELQRQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A+   + IG  G +   F  DP+S +V  +EIN +   T  S     +   G+   
Sbjct: 268 AYKIVEHIGVIGGTNVQFAHDPVSGRVIVIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 87/291 (29%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    +P        G   
Sbjct: 587 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLQIYRKEQPLGVIAQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +   E + I  T   ++  A   D+ R         +             +    
Sbjct: 647 LNLAAKLKEEGVNILGTTPEVIDLAEDRDQFRMMMEKLGIPMAEAGMASDVEEAKEIAAR 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ +++  + +   +  +        +LI++++           
Sbjct: 707 IGYPVMVRPSFVLGGRGMEIVRSKEQMEEYMRAAVGVTPDRPILIDRFL---HNALECEA 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D     VP    +       S +S  ++P+K   D + K ++         +   G
Sbjct: 764 DAISDGEHAFVPAVMEHIELAGIHSGDSACIIPSKHISDKHLKTIEEYTRKIAVEMNVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +        V+ LE N +   T     P ++   G     L   ++
Sbjct: 824 LMNMQYAI--EDDTVYVLEANPRASRT----VPLVSKVCGIRMVPLATDII 868


>gi|134094395|ref|YP_001099470.1| carbamoyl phosphate synthase, large subunit [Herminiimonas
           arsenicoxydans]
 gi|133738298|emb|CAL61343.1| carbamoyl phosphate synthase, large subunit (Carbamoyl-phosphate
           synthetase ammonia chain) [Herminiimonas arsenicoxydans]
          Length = 1076

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQAVERIIDKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L         +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHHNGVLTKYGCELIGASPEAIDKAEDRSKFKDAMTKIGLGSARSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +   Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTLEESWAVQKELGFPSIIRPSFTMGGSGGGIAYNAEEFEAICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPEDGRMIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 94/295 (31%), Gaps = 35/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  KP        G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPYGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 642 LKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLNDLGLRQPPNRTARTEEDALRLAQE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   +H   +L++++  D IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLNDAIEVDVDCL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +   E++R   L  + +   G
Sbjct: 762 SDGERTFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQETINELKRQTSLMAKGLNVIG 818

Query: 243 ISRSDFLFDPL--SRK----VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F         K    VF LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAIQQQEIDGKLQDVVFVLEVNPRASRT----VPYVSKATGLQLAKIAAR 869


>gi|167522361|ref|XP_001745518.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775867|gb|EDQ89489.1| predicted protein [Monosiga brevicollis MX1]
          Length = 806

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 18/99 (18%), Positives = 38/99 (38%)

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
               ++ +          PA++  +  +++ +   L       R   R DF F   ++  
Sbjct: 694 YESKWDPESPYWTDVQYKPAEVSAEHRRQLHQQCALLFNRFELRDFGRFDFRFSKRTQTF 753

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             LE+N  PG         MA  AG ++ +++  ++  A
Sbjct: 754 KLLEVNPNPGWCHDGKAALMAQMAGLNYADMIQRIILAA 792


>gi|326390047|ref|ZP_08211609.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus JW 200]
 gi|325993912|gb|EGD52342.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus JW 200]
          Length = 1072

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKEKPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEDGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +          +      + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +   + +   ++I  T    + 
Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNGVKILGTSHESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +  P +++P        +  +  
Sbjct: 663 ISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q I   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P M+   G    +L
Sbjct: 837 ASRT----VPIMSKATGIPMVKL 855


>gi|218442117|ref|YP_002380446.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           7424]
 gi|218174845|gb|ACK73578.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7424]
          Length = 1082

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLINSNPASIMTDPEMADRTYIEPLTPEMVEKVIAKERPDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    + + A  ++ D++  K  ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVSLAKNGALDRYNVELIGAKLPAIEMAEDRLLFKDAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         +     P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASNLDQAKAIALEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEVMAQYGLDCSPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPVDGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 42.2 bits (97), Expect = 0.089,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 77/293 (26%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   ++                         V  ++    P+       G   
Sbjct: 587 ALSDEGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEQENPEGVIIQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----- 118
               V     L          +          ++       +     I      +     
Sbjct: 647 LKLAVPLQKYLESPNCPVQTKIWGTSPDSIDIAEDRERFEKILSQLKITQPPNGIARSFD 706

Query: 119 ---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P V++P        + ++  DQ +   +  +        +LI+++++  
Sbjct: 707 ESLIIARRIGYPVVVRPSYVLGGRAMEIVFSDQDLERYMTYAVQVEPDHPILIDKFLEN- 765

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V   A      I     +       +S  ++  +  + +   +   ++       
Sbjct: 766 AIEVDVDTLADTSGKSIIGGIMEHIEEAGVHSGDSACSIPYSSLTPAVLDTIRTWTSQLA 825

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 826 NVLKVVGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGVPLAKI 872


>gi|479086|emb|CAA55651.1| vanA2 [Oerskovia turbata]
          Length = 261

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 55/217 (25%), Positives = 97/217 (44%), Gaps = 10/217 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 48  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 107

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P   KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 108 VINKDDRPVAATSTYPVFGKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 165

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224
           V G E+ C V+G+++  V          Y     +  +            +PA +  +  
Sbjct: 166 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 225

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             +Q      ++A+GCRG++R D      + ++   E
Sbjct: 226 GRIQETGKKIYKALGCRGLARVDMFL-QDNGRIVLNE 261


>gi|257459192|ref|ZP_05624311.1| carbamoyl-phosphate synthase, large subunit [Campylobacter gracilis
           RM3268]
 gi|257443577|gb|EEV18701.1| carbamoyl-phosphate synthase, large subunit [Campylobacter gracilis
           RM3268]
          Length = 1087

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  I         D D             S+  ++     D    
Sbjct: 29  SGTQAAKTLKSLGYRVVLINSNPATIMTDPDFADATYIEPITKESILRIIKREGVDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +QA     L  ++    +   +       K +   +     +P      
Sbjct: 89  TMGGQVALNVAMQAYESGELAGVKFLGANPEAIKKGEDRVKFKEAMIKIGMDLPKSKYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M + + I  P +I+        G  V                 +  +++LIE+ +
Sbjct: 149 NIEEAMAAANEIGFPLIIRASYTLGGAGSGVAYNIDEFKEVAQNGLDVSPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEFEMEVIRDHKDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD    ++H        +   L  +      +      ++ D
Sbjct: 616 FEPIDF-EHVRAVIEAENPDGV--IVHFGGQTPLKLAKRLSTVGAKIIGTSARTIDVAED 672

Query: 93  KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + + + GV      + +     ++    I  P +++P        +  +  +  +
Sbjct: 673 RKKFSEFIVNIGVKQPKNDTAVSEAEAIEKAAAIGYPVLVRPSYVLGGRAMRRVHSEAEL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++ S +H   +LI++++ D  EL    + D         +   +           
Sbjct: 733 RLYMSEAVSVSHHSPVLIDKFLLDATELDVDAICDGRDVYIGAIMEHIEEAGIHSG---D 789

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +++ + P  +  ++   V R        +G  G+    F       +++ +E+N +   T
Sbjct: 790 SASILPPLSLSAEMIDLVSRQTKEIALNLGVVGLMNIQFAIFE--NELYIIEVNPRASRT 847

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 848 ----VPFVSKATGIPMAKVATR 865


>gi|225572646|ref|ZP_03781401.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040000|gb|EEG50246.1| hypothetical protein RUMHYD_00834 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1106

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 106/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 63  SGTQACKALRQLGYEIVLVNSNPATIMTDPGIADVTYIEPLNVERLEEIIAKERPDAILP 122

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +         IL+  ++      + A     D++  K  ++S G+ +  S  
Sbjct: 123 NLGGQSGLNLCSELSKMGILDKYQVKVIGVQVDAIERGEDRIEFKNTMNSLGIEMARSEV 182

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 183 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 242

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   S +         +       ++  +        I  ++ KE+QR 
Sbjct: 243 SILGWEELELEVVRDSKNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKELQRQ 301

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +AI   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 302 AYKIVEAIEVIGGTNVQFAHDPVSGRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 356

Query: 291 WMV 293
            M+
Sbjct: 357 AML 359



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+ AGF+   +         D D              V  +    KP        G   
Sbjct: 615 ALKKAGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 674

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R+        +P     +     +     
Sbjct: 675 LNLSADLEKYGVKILGTPPAVIDMAEDRDLFRAMMDKLEIPMPEAGMAVNVEEALQIAEK 734

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+ + +S+   +  +        +LI++++           
Sbjct: 735 IGYPVMVRPSYVLGGRGMEVVYEPESMKAYMAAAVGVTPDRPILIDRFLR---HAMECEA 791

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+    +   K ++       + +  RG
Sbjct: 792 DAISDGTHAYVPAVMEHIELAGVHSGDSACIIPSANISEENLKTIKEYTKKIAEEMHVRG 851

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       KV+ LE N +   T     P ++     S   L   ++
Sbjct: 852 LMNMQYAI--EDGKVYVLEANPRASRT----VPLVSKVCNISMVPLATQII 896


>gi|220931137|ref|YP_002508045.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii
           H 168]
 gi|254813598|sp|B8D1H3|CARB_HALOH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|219992447|gb|ACL69050.1| carbamoyl-phosphate synthase, large subunit [Halothermothrix orenii
           H 168]
          Length = 1067

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 103/302 (34%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFN 56
           SG     AL++ G +V  +           D+   V L          ++   KPD    
Sbjct: 29  SGTQACKALKEEGLEVVLVNSNPATIMTDTDIADQVYLEPLTFDYITRIIEKEKPDGLLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V+     +L+   +    + + A   + D+   ++++   G P   S  
Sbjct: 89  TLGGQTGLNLAVELAEKGVLDKFGVTLLGTNLEAIQKAEDRNLFRELLDDIGEPFIESKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   I  P +++P       G  + +  + +   +      +  +Q+LIE+
Sbjct: 149 VDNLKEAVQTAQQIGFPVIVRPAYTLGGSGGGIAENVEELKEIVTLGLKRSRINQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D         +       ++  +        +    Y  ++  
Sbjct: 209 SLYGWKELEYEVIRDGNDNCITICNMENIDP-VGIHTGDSIVVAPSQTLSDKEYHLLRMA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G     F  DP     + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALGIEGGCNIQFALDPEGLDYYVIEVN--PRVSRSS--ALASKATGYPIAQVSA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 86/290 (29%), Gaps = 32/290 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A   AL+D   +   +         D D S  L    L  +   NV           
Sbjct: 575 SVHAV-RALQDRNVEAIIVNNNPETVSTDFDTSDKLYFEPLTTEYVLNVAEREGITDVIL 633

Query: 60  ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +         + +  T    +       +            P   ++     
Sbjct: 634 QFGGQTAINLAEPLSEAGMNVLGTGLKSINLTEDRKQFNQVLTSEKIPTPPGYTVFSIEE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   H I  P +++P       G+ ++  +  +   L  +        +LI++Y+ G E
Sbjct: 694 ALKLSHKIGYPVLVRPSYVLGGRGMEIVSNEAELKTYLTDAVKITPEHPVLIDRYIPGRE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235
           +    + D +  +     P    +       S +S  + PA+       + +        
Sbjct: 754 IEVDAISDGNDVLI----PGIMEHVERAGVHSGDSMAIYPARNLTTKQTRRLVNYTKKIC 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              G +GI    F+ D    + + LE+N +   T     P ++   G   
Sbjct: 810 NLFGIKGIINIQFVLD-RDGQFYVLEVNPRASRT----VPILSKVTGIPM 854


>gi|312795592|ref|YP_004028514.1| Carbamoyl-phosphate synthase large chain [Burkholderia rhizoxinica
           HKI 454]
 gi|312167367|emb|CBW74370.1| Carbamoyl-phosphate synthase large chain (EC 6.3.5.5) [Burkholderia
           rhizoxinica HKI 454]
          Length = 795

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D              V  ++A  +PD    
Sbjct: 66  SGAQACKALREEGYKVILVNSNPATIMTDPDTADVTYIEPITWEVVETIIAKERPDAILP 125

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G   +A+   + R K   +   + +  +    
Sbjct: 126 TMGGQTALNCALDLHRHGVLDKYGVELIGASPAAIDKAEDRQKFKEAMDQIGLGSAKSGI 185

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             + +    +             P VI+P       G  +            +    +  
Sbjct: 186 AHSWEEALKVQAEIAQATGGAGYPVVIRPSFTLGGSGGGIAYNRVEFEEICKRGLDLSPT 245

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 246 RELLIEESLLGWKEFEMEVVRDRHDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 305

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 306 QLMRDASLAVLREIGVDTGGSNVQFAINPRDGRMIVIEMN--PRVSRSS--ALASKATGF 361

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 362 PIAKVAAKL 370


>gi|307264947|ref|ZP_07546508.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
 gi|306919932|gb|EFN50145.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           wiegelii Rt8.B1]
          Length = 1072

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKEKPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVRLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +          +      + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 GIKIIKALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/275 (16%), Positives = 90/275 (32%), Gaps = 17/275 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +   + +   ++I  T    + 
Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNGVKILGTSHESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +  P +++P        +  +  
Sbjct: 663 ISEDREKFSKLLKELNINQPKGEYALTVGDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q I   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQEIIDYVSNATQVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
              T     P M+   G    +L    VE A   R
Sbjct: 837 ASRT----VPIMSKATGIPMVKLA---VEVALGKR 864


>gi|156973232|ref|YP_001444139.1| carbamoyl phosphate synthase large subunit [Vibrio harveyi ATCC
           BAA-1116]
 gi|156524826|gb|ABU69912.1| hypothetical protein VIBHAR_00913 [Vibrio harveyi ATCC BAA-1116]
          Length = 1077

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRAILVNSNPATIMTDPDMADATYIEPIQWEVVRNIIAKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 44.5 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 41/280 (14%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQVAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDSFLDD---AVEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +  + F     + +V+ +E+N +   T     P ++   G
Sbjct: 824 LMNTQFAV--KNNQVYLIEVNPRAART----VPFVSKATG 857


>gi|58038797|ref|YP_190761.1| carbamoyl phosphate synthase large subunit [Gluconobacter oxydans
           621H]
 gi|58001211|gb|AAW60105.1| Carbamoyl-phosphate synthase large chain [Gluconobacter oxydans
           621H]
          Length = 1084

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILINSNPATIMTDPGLADATYIEPITPEFVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ +   G+    S +
Sbjct: 89  TMGGQTALNAAMALDKSGFLKKHNVELIGADAEVIDRAEDRQKFREAMDEIGIESPRSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEARAALADVGLPAIIRPSFTMGGAGGGIAYNREEFDQIVTGGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVETGGSNVQFGVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 91/327 (27%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETVMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    ++                 G              + +  T +  + 
Sbjct: 616 RLYFEPLTAEDVIALIRTEAKGGKVLGCIVQYGGQTPLKLSRALEEAGIPLLGTPADAID 675

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P                 +  P V +P        + ++  
Sbjct: 676 RAEDRERFQAMLRKLGLRQPRNGIARSPAEAEKIAEEVGYPVVARPSYVLGGRAMEIVYD 735

Query: 147 DQSIPLDLLQS-----SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +   L +         + G  LL     D IE     + D         +   +   
Sbjct: 736 KPGLKRYLNEVLRAAGPEVSTGPVLLDHYLNDAIEADVDCICDGENVYVAGVMEHIEEAG 795

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   +  E++       + +G RG+    +      ++VF LE
Sbjct: 796 IHSG---DSACSLPPYTLSPALGTELRSQTEAMARELGIRGLMNVQYAI--KDQEVFVLE 850

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873


>gi|332306410|ref|YP_004434261.1| carbamoyl-phosphate synthase, large subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332173739|gb|AEE22993.1| carbamoyl-phosphate synthase, large subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 1072

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R  + + S G+    + +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFNVEMIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D    I  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLDEAFDVSTRIGFPCIIRPSFTMGGSGGGIAYNVEEFEEICRRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVDPQTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 93/291 (31%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPVGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   ++      +
Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDAIDKAEDRERFQKMVNKLNLKQPANATVSNLEEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            +   I  P V++P        + ++   + +   L  +   ++   +L+++++D  IE+
Sbjct: 702 LAAEKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNNAVKVSNDSPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +  DI   ++         
Sbjct: 762 DVDAICDGKEVMIGGIMEHIEQAG---VHSGDSACSLPPYSLSNDIQDVMREQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F       +V+ +E+N +   T     P ++   G    ++
Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGLPIAKI 863


>gi|256823599|ref|YP_003147562.1| carbamoyl-phosphate synthase large subunit [Kangiella koreensis DSM
           16069]
 gi|256797138|gb|ACV27794.1| carbamoyl-phosphate synthase, large subunit [Kangiella koreensis
           DSM 16069]
          Length = 1074

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  +         D +              V  ++   KPD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPNMADVTYIEPIHWEVVAKIIEKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   + +LE+  +    +   A   + D+    + +S  G+      +
Sbjct: 89  TMGGQTALNCALDLASRGVLEIHGVEMIGATREAIDKAEDRELFAKAMSKIGLDQPRQQV 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        Q  +  P +I+P       G  +    +      L+    +  ++LLI++
Sbjct: 149 AHSLEDAWKVQKEVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICLRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFAINPENGRMTIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 95/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ D G++   +         D D              V  ++   KP        G   
Sbjct: 587 AMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVDIEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQRAINRLGLLQPPNRTARNMEEGVRLAEE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  ++ +   +  + S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYNEEELRRYMNDAVSVSNESPVLLDRFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +  ++  E++R   +  + +  RG
Sbjct: 767 FDGKNILIGGIMEHIEQAG---VHSGDSACSIPPFSLSKEVQDELRRQMLVMAKELKVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +  + F       ++F LE+N +   T     P ++   G    ++
Sbjct: 824 LMNAQFAI--QGERIFILEVNPRASRT----VPFVSKATGTPMAKV 863


>gi|222151022|ref|YP_002560176.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus
           JCSC5402]
 gi|254813600|sp|B9EB69|CARB_MACCJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222120145|dbj|BAH17480.1| carbamoyl-phosphate synthase large chain [Macrococcus caseolyticus
           JCSC5402]
          Length = 1057

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYIEPLTLDFVSRIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ           + +  T    +  A   D  R+     +  VP    +
Sbjct: 90  LGGQTGLNMAVQLHEAGILEENNVTLLGTKLSSIEQAEDRDLFRNLMNELNEPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D    I  P +++P       G  +   ++ +   +     ++   Q LIE+ 
Sbjct: 150 NTVQQAIDFATSIGYPVIVRPAFTMGGTGGGICHDEKELVEIVTNGLKYSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDKEYHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 90/279 (32%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ +AG++   I+ +                       V  ++   +P+       G   
Sbjct: 580 AIREAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     +++  T    L  A    +  +         P+  +       + +   
Sbjct: 640 INLAEKLTKYGVKVLGTSLENLDRAEDRKEFEALMQRIEIPQPLGKTATSVEEAVANADF 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   + Q+   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNEEELINYMTQAVKASPEHPVLIDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +       ++         +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTEKQIATLEDYTKRLAHGLEIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++    + +VF LE+N       P ++ ++  P  
Sbjct: 817 LNIQYVI--SNDEVFVLEVNPRASRTVPFLSKITDVPMA 853


>gi|222056353|ref|YP_002538715.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32]
 gi|221565642|gb|ACM21614.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. FRC-32]
          Length = 1080

 Score = 67.6 bits (163), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYIEPVTPEILAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V      +L+   +    + + A   + D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVAVAENGVLDKFGVELIGAKLPAIKKAEDRTLFKQAMEKIGLAVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              N   M+    I  P +I+P       G  +    +            +  D++L+E+
Sbjct: 149 AHNNAEAMEIIREIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSATGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPKNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------HGNFG 63
           AL DAG++   +         D D S  L    L  +   N++             G   
Sbjct: 596 ALADAGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLNIVQLEKPVGVIVQFGGQTP 655

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +             
Sbjct: 656 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADR 715

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 716 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDAL 775

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  I   I  E++R   L    +  RG
Sbjct: 776 CDGTEAVIGGIMEHIEEAGIHSG---DSACSLPPYSISRAITDEIRRQTKLMALELNVRG 832

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +        ++ LE+N +   T     P ++   G    +L   +
Sbjct: 833 LMNVQYAI--KGGVIYILEVNPRASRTA----PFVSKATGRPLAKLAALI 876


>gi|78222983|ref|YP_384730.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
 gi|78194238|gb|ABB32005.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
          Length = 1081

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPDVLAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYTEAMEVIKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMGGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 597 ALGEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLSIVDLEKPQGVIVQFGGQTP 656

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +      +   P   +        +  + 
Sbjct: 657 LKLSVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANR 716

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   +++   +  +   +    +LI++++D  IE+    +
Sbjct: 717 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDAL 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  I  ++ +E++R   +    +  +G
Sbjct: 777 CDGTEVVIGGIMEHIEEAGIHSG---DSACCLPPHSISPELVEEIRRQTTVMALELNVKG 833

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +        ++ LE+N +   T     P ++   G    ++   +
Sbjct: 834 LMNVQYAI--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAARI 877


>gi|157838095|pdb|1A9X|A Chain A, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838096|pdb|1A9X|C Chain C, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838097|pdb|1A9X|E Chain E, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
 gi|157838098|pdb|1A9X|G Chain G, Carbamoyl Phosphate Synthetase: Caught In The Act Of
           Glutamine Hydrolysis
          Length = 1073

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++         + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRASYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|5821976|pdb|1CE8|A Chain A, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821978|pdb|1CE8|C Chain C, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821980|pdb|1CE8|E Chain E, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|5821982|pdb|1CE8|G Chain G, Carbamoyl Phosphate Synthetase From Escherichis Coli With
           Complexed With The Allosteric Ligand Imp
 gi|22219401|pdb|1M6V|A Chain A, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219403|pdb|1M6V|C Chain C, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219405|pdb|1M6V|E Chain E, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
 gi|22219407|pdb|1M6V|G Chain G, Crystal Structure Of The G359f (Small Subunit) Point
           Mutant Of Carbamoyl Phosphate Synthetase
          Length = 1073

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVINVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 825 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 867


>gi|305432825|ref|ZP_07401983.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           JV20]
 gi|304443979|gb|EFM36634.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           JV20]
          Length = 1095

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 35  SGTQAAKTLKEQGYRVVLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILP 94

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +       
Sbjct: 95  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAY 154

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 155 NYDEALKAVDEIGFPLMIRASYTLGGTGSGVVYNMDEFKELANTALALSPIHEILIEESL 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 215 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFA 274

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 275 ILREIGVDTGGSNVQFAVNPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 330



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 625 FEPIDF-EHLRGVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 681

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 682 RKKFAEFITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVTDESEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+QY+D   E+    + D         +   +           
Sbjct: 742 RLYMQEAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSG---D 798

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + +++ +        +G  G+    F     + +++ +E+N +   T
Sbjct: 799 SACSLPPCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAI--YNNELYMIEVNPRASRT 856

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 857 ----VPFVSKATGIPLAKVATR 874


>gi|300113256|ref|YP_003759831.1| carbamoyl-phosphate synthase large subunit [Nitrosococcus watsonii
           C-113]
 gi|299539193|gb|ADJ27510.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus watsonii
           C-113]
          Length = 1073

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  ++ +                     ++V  ++   +PD    
Sbjct: 29  SGAQACKSLKEEGYRVILVNSNPATIMTDPGLADATYIEPLTWKTVARIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   + ILE   +    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYGVEMIGANQEAINKAEDRDLFRQAMQKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +Q  +  P VI+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEAQQAQRDLGFPIVIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPSSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFEMEVVRDSKDNCIIICAIENLDPMGVHTGDSITVAPAQTLTDKEYQVMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPEDGRLIIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +++  +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIISLEQPQGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I  T    +  A   ++ +          P   +       +     
Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQRLIEKLGLKQPPNRTARTQEEALRLAAE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++     +   + ++ S ++   +L+++++ +  E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYTADELARYMKEAVSVSNDSPVLLDRFLDEATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +   ++       + +   G
Sbjct: 767 CDGGQVMVGGIMEHIEQAG---VHSGDSACALPPFSLNAAVQNRLREQVCNMARELKVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F     + +++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAI--QANEIYVLEVNPRASRT----VPFVSKTIGIPLAKIAAR 866


>gi|57168407|ref|ZP_00367541.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
 gi|57020215|gb|EAL56889.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
          Length = 1089

 Score = 67.2 bits (162), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKEQGYRVVLINSNPATIMTDPEFADATYIEPVTKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +       
Sbjct: 89  TMGGQVALNVAMEVYESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLSKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYDEALKAVDEIGFPLMIRASYTLGGTGSGVVYNMDEFKELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQVMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 86/262 (32%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      ++ D
Sbjct: 619 FEPIDF-EHLRGVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDMAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + ++  G+      +       +     I  P +++P        + V+  +  +
Sbjct: 676 RKKFAEFITKLGINQPKNSTATSVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVTDESEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+QY+D   E+    + D         +   +           
Sbjct: 736 RLYMQEAVDVSDKSPVLIDQYLDNATEIDVDAISDGKDVYVAGIMEHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I   + +++ +        +G  G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPPCNIDEKMQEQIVQKTADIALNLGVVGLLNIQFAI--YNNELYMIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|255318890|ref|ZP_05360116.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SK82]
 gi|262378855|ref|ZP_06072012.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SH164]
 gi|255304146|gb|EET83337.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SK82]
 gi|262300140|gb|EEY88052.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter
           radioresistens SH164]
          Length = 1076

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAAIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +LE   +    +   A   + D+    Q +   G+    + +
Sbjct: 89  TMGGQTALNCALALDANGVLEKYNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKAAI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++ Q     P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNREEFLEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEKPKGIIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      M
Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  D+ +   L  +   ++   +L+++++D  IE+
Sbjct: 702 AEAAKVGYPLVVRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  ++  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEVQDEMRRQTIAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNVQFAV--KGDDVYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|109898531|ref|YP_661786.1| carbamoyl phosphate synthase large subunit [Pseudoalteromonas
           atlantica T6c]
 gi|109700812|gb|ABG40732.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas
           atlantica T6c]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ R  + + S G+    + +
Sbjct: 89  TMGGQTALNCALDLDKHGVLTEFGVEMIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D    I  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLDEAFDVSTRIGFPCIIRPSFTMGGSGGGIAYNVEEFEEICRRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDAMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVDPQTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 94/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPVGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   ++      +
Sbjct: 642 GGQTPLKLARDLEAAGVPIIGTSPDAIDKAEDRERFQKMVNKLNLKQPANATVSNLEEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            +   I  P V++P        + ++   + +   L  +   ++   +L+++++D  IE+
Sbjct: 702 LAAEKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNNAVKVSNDSPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +  DI   ++         
Sbjct: 762 DVDAICDGKEVMIGGIMEHIEQAG---VHSGDSACSLPPYSLSEDIQNVMREQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F       +V+ +E+N +   T     P ++   G +  ++
Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGLAIAKI 863


>gi|329893939|ref|ZP_08269974.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           IMCC3088]
 gi|328923394|gb|EGG30711.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           IMCC3088]
          Length = 1073

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWETVSKIIEAERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+      +   G+    +  
Sbjct: 89  TMGGQTALNCALDLDKHGVLKKFGVEMIGATKEAIDKAEDRQLFDDAMKRIGLETPRAAT 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     L  I  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 ARSMEHAFAILEDIGLPCIIRPSFTMGGSGGGIAYNREEFEEICIRGFDLSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          ++       
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEMQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGQDPKTGRFVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/322 (12%), Positives = 105/322 (32%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39
           + VL GG +         G+          +AL   + G++   +         D D   
Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP+       G            + + I  T    +  A  
Sbjct: 614 RLFFEPVTIEDVIEIIDLEKPEGVIVQFGGQTPLKLARALEAKGVPIIGTTPDAIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++      +++   I  P V++P        + ++ +++ +
Sbjct: 674 RERFQHMIQKLGLKQPANTTVRSVDEALEAAASIGYPLVVRPSYVLGGRAMEIVFREEDL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   +    +L++ ++   IE+    + D    V    +   +       +S  
Sbjct: 734 LRYMKNAVLVSDDSPVLLDSFLSAAIEVDIDAVSDGKTVVIGAIMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +P+D+  E++         +G  G+      +     +++ +E+N +   T
Sbjct: 791 SACALPPYNLPMDVQDEMREQVKQMALELGVCGLMNVQLAW--QDNEIYVIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S  ++   
Sbjct: 849 ----VPFVSKCIGESLAKVAAR 866


>gi|325109260|ref|YP_004270328.1| carbamoyl-phosphate synthase large subunit [Planctomyces
           brasiliensis DSM 5305]
 gi|324969528|gb|ADY60306.1| carbamoyl-phosphate synthase large subunit [Planctomyces
           brasiliensis DSM 5305]
          Length = 1090

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRELGYEVVLVNSNPATIMTDPETADRTYIEPITWQYVEEIIRQEKPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G         +     L +      G  A  ++  + R     +   + +  +    
Sbjct: 89  TLGGQTGLNTAMELHKRGILEKHNVELIGARADVIAKAEERELFKDAMTAIGMDCARSAV 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              MD        I  P +I+        G  +    +     + +    +   ++L+E+
Sbjct: 149 VRNMDQARAALDEIGLPLIIRASFTLGGTGGGIAYNREEFEGKVRKGLQLSPVGEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SMLGWKEYEMEVMRDKNDNCVIICAIENFDPMGVHTGDSLTVAPAQTLTDKEYQRMRDAT 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G +   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 FACIREIGVETGGANVQFAIHPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 91/286 (31%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           ALE+ G +   +         D D              V  +   L+PD       G   
Sbjct: 594 ALEELGIESIMVNSNPETVSTDYDTSDLLFFEPLTLEDVLNICDRLQPDGVIVQFGGQTP 653

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    + +A   ++ +     +    P     +           
Sbjct: 654 LNLAKGLETAGVPIIGTSPDSIDAAEDRERFQEILTRAGLKQPPNGIAIDTEGARAQADR 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + +  ++ ++   + ++   +    +L++++  D IE+    +
Sbjct: 714 IGYPVLVRPSYVLGGRAMQICYEETALLKYMTEAVDASPDHPVLVDKFLQDAIEVDVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  +  +  +E++       + +  RG
Sbjct: 774 SDGETTIVGGIMEHIEEAGIHSG---DSACAIPPHSLSEETLEEIREATKALARELNVRG 830

Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    F    +    +V+ LE+N +   T     P ++   G S  
Sbjct: 831 LMNIQFAVKEIDGNFEVYVLEVNPRASRTS----PFVSKATGMSLA 872


>gi|308069855|ref|YP_003871460.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           (carbamoyl-phosphate synthetase ammonia chain)
           [Paenibacillus polymyxa E681]
 gi|305859134|gb|ADM70922.1| Carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           (Carbamoyl-phosphate synthetase ammonia chain)
           [Paenibacillus polymyxa E681]
          Length = 1071

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEQAEDRDLFRDLMRELEQPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +++  + I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTLEESLEFANEIGYPIIVRPAYTLGGTGGGICSTEEELRETVSSGLRYSPIGQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDGNDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T+   +  A    K        +   P   ++      + +   
Sbjct: 648 INLAAPLSAAGVNILGTNLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  ++ +++  +     + +   G+
Sbjct: 768 DGETVLVPGIMEHVERAG---VHSGDSIAVYPPQHLSAELKQKIVEITISIAKELKTIGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++         L    +
Sbjct: 825 VNIQFVIHQ--DQVYVIEVNPRSSRT----VPFLSKVTNIPMANLATQAI 868


>gi|254427205|ref|ZP_05040912.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax sp. DG881]
 gi|196193374|gb|EDX88333.1| carbamoyl-phosphate synthase, large subunit [Alcanivorax sp. DG881]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFRVILVNSNPATIMTDPAMADATYIEPITWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R  + + + G+    S +
Sbjct: 89  TMGGQTALNCALDLDHNGVLKEFGVEMIGATEDAIDKAEDRSRFDKAMKAIGLECPRSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     S     +  P +I+P       G  V    +       +    +  ++LLI++
Sbjct: 149 AHNMEEASAALEELGFPCIIRPSFTMGGSGGGVAYNREEFEEICQRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          ++       
Sbjct: 209 SLLGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKELQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPDNGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/266 (13%), Positives = 91/266 (34%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  KP        G              + I  T    + 
Sbjct: 613 DRLYFEPITL---EDVLAIVAKEKPKGVIVQYGGQTPLKLARALQAAGVPIIGTPPDAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +       +     I  P V++P        + ++  
Sbjct: 670 EAEDRERFQQMVNKLGLKQPPNRTARSMEDGVRLAEEIGYPLVVRPSYVLGGRAMEIVYS 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  +   ++ + S ++   +L+++++D  IE+    + D +  V    +   +       
Sbjct: 730 EAELRNYMMNAVSVSNDSPVLLDRFLDDAIEVDVDAVCDGTDVVIGGIMQHIEQAG---V 786

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+   +++ A      +G  G+    F     S +V+ LE+N +
Sbjct: 787 HSGDSACSLPPYSLDDDVQDVMRQQAADMALELGVVGLMNVQFAV--KSGEVYVLEVNPR 844

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G S  ++   
Sbjct: 845 ASRT----VPYVSKCIGVSLAKVAAR 866


>gi|85858069|ref|YP_460271.1| carbamoyl phosphate synthase large subunit [Syntrophus
           aciditrophicus SB]
 gi|85721160|gb|ABC76103.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus
           SB]
          Length = 1066

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 106/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV        +S+  ++ + KPD    
Sbjct: 29  SGTQACKALRKLGYEIILVNSNPATIMTDPGTADVTYIEPLNVQSMIEIIENEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     ILE   +      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQTGLNLTAELAKLGILEKYGVKVIGVQVDAIERGEDRIAFKETMTRLGIDMPKSEP 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++   + +     +  S +   Q+LIE+
Sbjct: 149 AYTVEEAEKIASKLGYPVVVRPAYTMGGTGGGLVYNLEELRAVASRGISASRVGQILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +     +         +  +  +       T  +   I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDEKNQMITVCFIENVDAMGVHTGDSYCTAPM-LTISPELQERLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++   +AI   G +   F  +P + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 SYAIVEAIQVIGGTNIQFAHNPETGRVVIIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 SML 325



 Score = 36.8 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 85/284 (29%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ D G++   +         D D              V  +    KP+       G   
Sbjct: 580 AIRDEGYESIMVNCNPETVSTDYDTSNKLYFEPLTVEDVLSIYEKEKPEGVIAQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    +  A   D+ R         +P     +  +  +D    
Sbjct: 640 LNIAGELEKAGVRIIGTSPETIDLAEDRDRFRKMMRKLGIPMPESGMAINLQEALDVAKR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  ++ +   +  +        +LI+++++          
Sbjct: 700 IGYPLMVRPSYVLGGRGMEVVHDEEMLKRYVAAAVGVTPERPILIDKFLEN---AIEAEA 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T+  VP    +       S +S   + P  I     + +           G  G
Sbjct: 757 DAISDGTDAFVPAVMEHIELAGIHSGDSACVIPPISIAPRHLETINEYTRTIAIEFGVVG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +        V+ LE N +   T     P ++     S  
Sbjct: 817 LMNIQYAI--ADDVVYILEANPRASRT----VPLVSKICNISMA 854


>gi|81428566|ref|YP_395566.1| carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus
           sakei subsp. sakei 23K]
 gi|123564265|sp|Q38X24|CARB_LACSS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|78610208|emb|CAI55257.1| Carbamoyl-phosphate synthase, catalytic subunit [Lactobacillus
           sakei subsp. sakei 23K]
          Length = 1060

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 91/293 (31%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   ++ +                       V  V+   KP+       G
Sbjct: 577 CVQAIQKAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVVELEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   D         +   PV  +       +  
Sbjct: 637 QTAINLAAPLEENGVKILGTSVANLDRAEDRDLFDQLIQELNIPQPVGKTATNAPDALTI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +I+P        + ++   + +   + ++   +    +LI++Y+ G E    
Sbjct: 697 ATEIGYPVLIRPSFVLGGRAMEIVHTPEDLTHYMQEAVKVSDEHPVLIDRYLMGKECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +  D    +         A+ C
Sbjct: 757 AICDGQEVLIPGIMEHIERAG---VHSGDSMAVYPPQNLTEDQKAAIIDYTTKLCLALDC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+    + +V+ +E+N +   T     P ++        +L   ++
Sbjct: 814 HGLLNIQFII--QNDEVYVIEVNPRASRT----VPFLSKVTQIPMAQLATQLI 860



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKEEGYQVVLINSNPATIMTDKTVADTVYIEPITLDFVTQILRKELPDAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +  ++     +  +P    
Sbjct: 89  TLGGQTGLNMALELANCGILAELNIELLGTKLSAIDQAEDRELFKNLMNQLNEPIPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P +I+P       G  + +    +   +    + +   Q+L+EQ
Sbjct: 149 AHSLDDAQEFVKQNGFPVIIRPAFTLGGTGGGIAENAGQLKTIVKNGIALSPVGQVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDRNDNALVVCNMENFDPVGIHTGDSIVFAPVQTLSDREVQM-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + F +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPNSERYFIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|302037857|ref|YP_003798179.1| carbamoyl-phosphate synthase large subunit [Candidatus Nitrospira
           defluvii]
 gi|300605921|emb|CBK42254.1| Carbamoyl-phosphate synthase, large subunit [Candidatus Nitrospira
           defluvii]
          Length = 1089

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I         D D +            V  V+   +PD    
Sbjct: 29  SGTQACKALKEEGYRVILINSNPATIMTDPDFADRTYIEPITLDVVEKVIECERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +    + +LE   +    + I A   + D+   +Q +   G+ V  S  
Sbjct: 89  TMGGQTALNTAIGLAKRGVLEKYGVRLIGASIAAIHKAEDRDAFRQAMWKIGLRVPDSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  +    +     +    S +   Q+LIEQ
Sbjct: 149 ATSLAEAERELERIRFPAIVRPSFTMGGTGGNIAYNIEEFRTQVEWGLSMSPVRQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I  P  +     +      +          +        
Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICPIENLDPMGVHTGDSITVAPALTLTDKEYQMLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G +   F  +P++ ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVDTGGANIQFGLNPVNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 36.8 bits (83), Expect = 4.3,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 94/318 (29%), Gaps = 45/318 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +   +   +         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCVHAAMALREEQIETIMVNCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +   N++             G       +      + I  T    +  A  
Sbjct: 630 RLYFEPLTEEDVLNIVEREQPMGVVLQFGGQTPLKLALSLSRAGVRILGTSPDAIDRAED 689

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             + R                      +     I+ P +++P        + ++  +  +
Sbjct: 690 RARFRELLDKLGLRQAESGMAHSVEEALTIAAEITYPVMVRPSYVLGGRSMQIVYDEAGL 749

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +   +    +LI++Y+   +         S   T +     +       +S  +
Sbjct: 750 LHYMNTAVKASEKHPVLIDKYL--RDAIEIDADAISDGTTVVVAGIMEHIEEAGVHSGDS 807

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P  +   I +E++R        +G  G+  + F      + ++ LE+N +   T 
Sbjct: 808 ACSLPPYTLDATIIEEIRRQMTALALELGVIGLMNAQFAV--KDQTIYVLEVNPRGSRT- 864

Query: 271 VSIFPEMAAYAGYSFREL 288
               P ++   G    +L
Sbjct: 865 ---VPFVSKAIGVPLAKL 879


>gi|162139870|ref|YP_746109.2| carbamoyl phosphate synthase large subunit [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1092

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q      LE   +    +       + D+++ +  +   G+    S++
Sbjct: 89  TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHTGDSVTVAPALTLTDREYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 52/321 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 570 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 622

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G              + I  T    + 
Sbjct: 623 RLYFEPLTAEDVINLIRREQQSGTVLGCIVQYGGQTPLKLSHALSRAGIPILGTSVDAID 682

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +A   ++ ++     S   P        +        I  P VI+P        + ++  
Sbjct: 683 AAEDRERFQALLNGLSLLQPENGIARSAQEAEAITARIGYPVVIRPSYVLGGRAMEIVYD 742

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +  + +LI++Y  D IE+    + D         +   +       
Sbjct: 743 HAGLNRYMREAVRVSGDNPVLIDRYLNDAIEVDVDCIADGERVYVAGVMEHIEEAGIHSG 802

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEI 262
               ++  + P  +   +  E++       + +   G+    F        S +++ LE+
Sbjct: 803 ---DSACSLPPYSLSPALVDELRAQTEALARGLQVIGLMNVQFAIKREADGSDRIYVLEV 859

Query: 263 NVQPGMTPVSIFPEMAAYAGY 283
           N +   T     P +A   G 
Sbjct: 860 NPRASRT----VPFVAKATGV 876


>gi|114317126|gb|ABI63186.1| carbamoyl-phosphate synthase large chain [Granulibacter
           bethesdensis CGDNIH1]
          Length = 1101

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  KPD    
Sbjct: 38  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYIEPITPDVVERIIAKEKPDAILP 97

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q      LE   +    +       + D+++ +  +   G+    S++
Sbjct: 98  TMGGQTALNTAMQLHASGALERHGVELIGAKADVIDRAEDRLKFRDAMDEIGIESPRSVI 157

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 158 AHTLEEAREGLAHVGLPAVIRPSFTLGGTGGGIAYNKEEFEQIVTSGLDASPTTEVLIEE 217

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +     
Sbjct: 218 SVLGWKEYEMEVVRDSADNCIIICSIENIDPMGVHTGDSVTVAPALTLTDREYQRMRDAS 277

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 278 IACLRKIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 333

Query: 291 WM 292
            +
Sbjct: 334 KL 335



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 52/321 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 579 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 631

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G              + I  T    + 
Sbjct: 632 RLYFEPLTAEDVINLIRREQQSGTVLGCIVQYGGQTPLKLSHALSRAGIPILGTSVDAID 691

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +A   ++ ++     S   P        +        I  P VI+P        + ++  
Sbjct: 692 AAEDRERFQALLNGLSLLQPENGIARSAQEAEAITARIGYPVVIRPSYVLGGRAMEIVYD 751

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +  + +LI++Y  D IE+    + D         +   +       
Sbjct: 752 HAGLNRYMREAVRVSGDNPVLIDRYLNDAIEVDVDCIADGERVYVAGVMEHIEEAGIHSG 811

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEI 262
               ++  + P  +   +  E++       + +   G+    F        S +++ LE+
Sbjct: 812 ---DSACSLPPYSLSPALVDELRAQTEALARGLQVIGLMNVQFAIKREADGSDRIYVLEV 868

Query: 263 NVQPGMTPVSIFPEMAAYAGY 283
           N +   T     P +A   G 
Sbjct: 869 NPRASRT----VPFVAKATGV 885


>gi|303238623|ref|ZP_07325156.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Acetivibrio cellulolyticus CD2]
 gi|302593742|gb|EFL63457.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Acetivibrio cellulolyticus CD2]
          Length = 337

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 100/299 (33%), Gaps = 23/299 (7%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHG--NFGEDGLV 68
           E+S     A  SA+++ GF+V  +     +     +   + D  FN+  G        + 
Sbjct: 42  EIS-----AVVSAVKNLGFEVRILGTPDDIITNMGIVKKQVDFIFNLSVGFRRRFRLSVA 96

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-PP 127
            AI E   +PY+ +      +  +K   K +     +P  P   ++  +   +  +   P
Sbjct: 97  PAIYEAAGVPYSGADPYTKMVCQNKHLMKSLWDKMNIPTPPWAYIDNISKVQELELPEFP 156

Query: 128 YVIKPLKGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
            +IKP   G         V    + +   +    S  H   L+IE+++ G E    V+G+
Sbjct: 157 IIIKPAYEGNSIGINANAVAYNKEELFSKIEAIYSTLH-MPLIIEKFIAGKEYKIVVIGN 215

Query: 185 ASLDVTEIAV-------PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            +     +            + + Y     + +   V       +          +    
Sbjct: 216 KNQKFIGMVEYLNGGGSSLRNEFIYFSAKVNGDYYQVRRDINLPEYKSIKSDCQAIYEMF 275

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +        D   D    K ++LE N    + PV    +        + +++  +++ +
Sbjct: 276 L-PVDYGTFDIRVDEY-GKHYFLEFNADDSLHPVRTMAQCCKLNDIDYEKMIESILKSS 332


>gi|257784417|ref|YP_003179634.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM
           20469]
 gi|257472924|gb|ACV51043.1| carbamoyl-phosphate synthase, large subunit [Atopobium parvulum DSM
           20469]
          Length = 1073

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 89/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ +                      SV  V+   +PD    
Sbjct: 29  SGTQACRALRKEGFEVVLVNSNPATIMTDPETADRTYVEPITVESVTRVIERERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    ++   + R     +   + +  +    
Sbjct: 89  NMGGQTALNCTIGLGEAGVLDKYNIEVIGCNLDSIRTGEDRELFSEAVQDIGLEVARADI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P VI+P       G  +    + +   + Q    +   ++L+E+
Sbjct: 149 AHSMEDAQRIVADLGYPVVIRPSFTLGGAGGGIAHTPEELVEIVEQGLLLSPEHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   +     +     +     +      +          ++       
Sbjct: 209 SIEGWKEIEMEVMRDTTGNGIVVCSIENLDPMGVHTGDSITVAPAQTLTDKELQNLRDYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IAILERVGVACGGSNVQFAVNPTNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKM 322



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 84/290 (28%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  V+   KP+     L G   
Sbjct: 586 ALREQGYETVMVNCNPETVSTDYDTSDRLYFQPLTFEDVMDVIEVEKPEGVIVTLGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   D+  +     +   P            D+   
Sbjct: 646 IKLARALKDAGVPIMGTQPEAIDLAEDRDRFAALLDRLNIACPPSAVASTMDEARDAARR 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P       G+ ++  D  +   +  ++       + ++ +  D IEL    +
Sbjct: 706 IGYPLIVRPSYVLGGRGMAIVYDDSDLVTYMKSATHVTPDRPVYLDAFLEDAIELDVDAL 765

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++    P  +   I  +++ +      A   RG
Sbjct: 766 CDTEECYVGSVLEHIEECGIHSG---DSACCWPPFSLSEKIVGQIRAITKKLALACDIRG 822

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +        VF +E+N +   T     P  +   G S  +    +
Sbjct: 823 LLNIQYAV--RDEHVFVIELNPRASRT----VPFSSKATGVSLAKFASRI 866


>gi|308050594|ref|YP_003914160.1| carbamoyl-phosphate synthase large subunit [Ferrimonas balearica
           DSM 9799]
 gi|307632784|gb|ADN77086.1| carbamoyl-phosphate synthase large subunit [Ferrimonas balearica
           DSM 9799]
          Length = 1073

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +     +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEKHGVLAEFGVEMIGATADAIDKAEDRARFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEDAHKVLDQVGFPCIIRPSFTMGGTGGGIAYNIEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGVNPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVERLGLKQPENSTVTALEQAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+
Sbjct: 702 RDAERIGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +       +S  +   + P  +   I  E++         
Sbjct: 762 DVDAVCDGTDVVIGGIMEHIEQAG---VHSGDSGCSLPPYTLSAAIQDEMREQVRKLALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVIGLMNVQFAV--KDNVIYLIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|167039321|ref|YP_001662306.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X514]
 gi|300913961|ref|ZP_07131278.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X561]
 gi|307725354|ref|YP_003905105.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter sp.
           X513]
 gi|226700942|sp|B0K4D7|CARB_THEPX RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|166853561|gb|ABY91970.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X514]
 gi|300890646|gb|EFK85791.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X561]
 gi|307582415|gb|ADN55814.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter sp.
           X513]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRKLFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 86/263 (32%), Gaps = 14/263 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +     +   ++I  T    + 
Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNGVKILGTSYESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +S P +++P        +  +  
Sbjct: 663 ISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLSFPLLVRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q +   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLI----PGIMEHIERAGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P M+   G    +L
Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855


>gi|39996378|ref|NP_952329.1| carbamoyl-phosphate synthase large subunit [Geobacter
           sulfurreducens PCA]
 gi|39983258|gb|AAR34652.1| carbamoyl-phosphate synthase, large subunit [Geobacter
           sulfurreducens PCA]
 gi|298505388|gb|ADI84111.1| carbamoyl-phosphate synthase, large subunit lipoprotein,
           glutamine-dependent [Geobacter sulfurreducens KN400]
          Length = 1081

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADRTYVEPVTPEVLAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMEKIGLSVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYSEAMTVVKTVGFPAIIRPSFTLGGTGGGIAYNMEEYEKMAMAGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRNGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP+       G   
Sbjct: 597 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLSIVELEKPEGVIVQFGGQTP 656

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +      +   P   +        +  + 
Sbjct: 657 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLNLLQPENGTARSFEEAEEVANR 716

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   +++   +  +   +    +LI++++D  IE+    +
Sbjct: 717 IGYPVVVRPSYVLGGRAMEIVYDVENLRRYMTTAVQASPEHPILIDKFLDKAIEIDVDAL 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  I   + +E++R   +    +  +G
Sbjct: 777 CDGTDVVIGGIMEHIEEAGIHSG---DSACCLPPHSISQALVEEIRRQTTVMALELNVKG 833

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +        ++ LE+N +   T     P ++   G    ++   
Sbjct: 834 LMNVQYAI--KDGTIYILEVNPRASRTA----PFVSKATGRPLAKIAAR 876


>gi|269926476|ref|YP_003323099.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum
           ATCC BAA-798]
 gi|269790136|gb|ACZ42277.1| carbamoyl-phosphate synthase, large subunit [Thermobaculum terrenum
           ATCC BAA-798]
          Length = 1095

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G  V  ++ + +                     +  +++  +PD    
Sbjct: 29  SGSQACKALREEGIFVVLVNSNPATIMTDEATADRVYIEPLNVDVLEKIISRERPDGILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  V+     I++   +    + + +   + D+   +         V    +
Sbjct: 89  TLGGQTGLNLAVELASAGIVDKYGVKLLGTSLESIKQAEDRLLFKQLLQEIGEPVIESMT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +   + I  P + +P       G  +      +   +  S   +   Q L+E+
Sbjct: 149 VHSVQEAIAFANQIGYPLISRPAYTLGGTGGGIAHNQGELTKLIEHSLRASPIGQTLLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G                 I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SIEGW-KEIEYEVIRDSADNAIIVCNMENIDPVGVHTGDSIVVAPSQTLTDRQYQILRDS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  DP S   + +E+N  P ++  S     +   GY    +  
Sbjct: 268 ALRIVRALKIEGGCNVQFALDPKSDDYYVIEVN--PRVSRSS--ALASKATGYPIARVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 63/169 (37%), Gaps = 11/169 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   +  ++  +    +L+++Y++G E+   
Sbjct: 719 ATRIGYPLLVRPSYVLGGQAMRIVYNEVELLDYIDAATEVSGDHPVLLDRYIEGTEVEVD 778

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            + D    V     P    +       S +S  V P     D    +++ +     +A+ 
Sbjct: 779 AVSDGETVVI----PGIVEHIERAGVHSGDSFGVYPQITLDDRDVSQIEEITVKLARAMN 834

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    F+      +V+ LE+N +   T     P ++   G     L
Sbjct: 835 VKGLMNVQFVV--QDHQVYILEVNPRASRT----VPFISKVTGVPLVTL 877


>gi|171463552|ref|YP_001797665.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171193090|gb|ACB44051.1| carbamoyl-phosphate synthase, large subunit [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 1087

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 92/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  +              DV          V  ++A  KPD+   
Sbjct: 29  SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIATEKPDVILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE        +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYGCKLIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAHEVQQRIQHETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREICVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKIAAKL 333



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAKEKPKGVIVQY 646

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 647 GGQTPLKLALDLEHNGVPIIGTPPDMIDAAEDRERFQKLLKDLGLRQPPNRTARTEEEAL 706

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++   + +   + ++   +H   +L++++  D IE 
Sbjct: 707 KLAEEIGYPLVVRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 766

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +     +E++RL     + 
Sbjct: 767 DVDCISDGEKVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSDATVEEIKRLTAAMAKG 823

Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F    +  K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LNVVGLMNVQFAIQNVDGKDIIYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 875


>gi|166367783|ref|YP_001660056.1| carbamoyl phosphate synthase large subunit [Microcystis aeruginosa
           NIES-843]
 gi|166090156|dbj|BAG04864.1| pyrimidine-specific carbamoyl-phosphate synthase large chain
           [Microcystis aeruginosa NIES-843]
          Length = 1081

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+   K+ +   GVPVCPS +
Sbjct: 89  TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N               P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLEEAKAIAHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 38.3 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 19/168 (11%), Positives = 56/168 (33%), Gaps = 7/168 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D  +   +  +        +LI+++++   +   
Sbjct: 712 AKRIGYPVVVRPSYVLGGRAMEIVYSDSELERYMKYAVQIEPDHPILIDKFLEN-AIEVD 770

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   +    T +     +       +S  ++  +    +   +   +++      +A+  
Sbjct: 771 VDALSDATGTVVIGGLMEHIEQAGVHSGDSACSIPHTSLSASVLTTIRQWTVELAKALKV 830

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    +        V+ LE N +   T     P ++   G    ++
Sbjct: 831 IGLMNIQYAV--QGETVYILEANPRASRT----VPYVSKATGVPLAKV 872


>gi|22095498|sp|Q59599|CARB_NEIGO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1071

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 90/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L   ++    +   A   + D  R K+ +   G+    S+ 
Sbjct: 89  TMGGQTXLNCALDLAGNGVLAKYDVELIGATEDAIDKAEDPGRFKEAMEKIGLSCPKSLF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAETLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPEKGEMIVIEMN--PRVSRSS--ALASKATGFPIAKV 322



 Score = 43.3 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 33/286 (11%)

Query: 21  ACASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLH 59
           +  +AL   ++GF+   +         D D S  L    L  +              ++H
Sbjct: 576 SVHAALPLRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVH 635

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
                   +   L    +    +   +   + D+ R ++V++  G+   P+ + +     
Sbjct: 636 YGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEA 695

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
                 I  P V++P        + ++   +++   + +    +    +L++ +  + IE
Sbjct: 696 LVKAEEIGYPLVVRPSYVLGGPAMQIVHSAEALQKYMREPVQVSEDSPVLLDFFLNNAIE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    V    +   +           +   + P  +  +I  E++R       
Sbjct: 756 VDVDCVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAY 812

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           A+G  G+    F        VF LE+N +         P ++   G
Sbjct: 813 ALGLVGLMNVQFAV--QDAVVFVLEVNPR----ATRTVPFVSKATG 852


>gi|163750814|ref|ZP_02158049.1| carbamoyl-phosphate synthase large subunit [Shewanella benthica
           KT99]
 gi|161329509|gb|EDQ00503.1| carbamoyl-phosphate synthase large subunit [Shewanella benthica
           KT99]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +   + +L+   +    +   A   + D+ R  + + + G+       
Sbjct: 89  TMGGQTALNCALELESKGVLKEFNVEMIGATADAIDKAEDRGRFDKAMKAIGLECPRAGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHTMAEAFAVQETLGFPCIIRPSFTMGGSGGGIAYNIEEFEEICTQGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   I         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMINCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQKAIQRLEMKQPENDTVTTVENAIISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  D+   ++         +G  G
Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSEDVQNRMRDQVEKLAIELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|163782970|ref|ZP_02177965.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881650|gb|EDP75159.1| ketol-acid reductoisomerase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 556

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     +  V+   +PD    
Sbjct: 29  SGTQACKALRQEGYEVVLVNSNPATIMTDPEVADRTYIEPLTEEILEEVIRRERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + IL+   +    +   A     D+   ++ +++ G+ V  S  
Sbjct: 89  TLGGQTALNLSVKLYEEKILDAYGVEMIGANYEAIKRGEDRELFREAMNNIGLKVPESAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++P       G  +    +     L  +   +   Q+L+++
Sbjct: 149 VSSEEEGLRAVEEIGFPVILRPAFTLGGTGGSIAYNVEEFKHKLEVALKTSPIHQVLLDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEFEFEVIRDKADNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P +   + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREIGVDTGGSNIQFAVSPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|297545468|ref|YP_003677770.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
 gi|296843243|gb|ADH61759.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           mathranii subsp. mathranii str. A3]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +          +      + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 87/267 (32%), Gaps = 14/267 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +     +   ++I  T    + 
Sbjct: 606 DRLYFEPITV---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNGVKILGTSYESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +  P +++P        +  +  
Sbjct: 663 ISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q +   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVSDGECVLI----PGIMEHIERAGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P M+   G    +L + +
Sbjct: 837 ASRT----VPIMSKATGVPLVKLAVEI 859


>gi|289579317|ref|YP_003477944.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           italicus Ab9]
 gi|289529030|gb|ADD03382.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           italicus Ab9]
          Length = 1072

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACKSLKEEGLQVVLVNNNPATIMTDTDIADIVYIENPTVCVVEKIIAKEKPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVSLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +          +      + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDADDNCITICSMENFDPVGVHTGDSIVVAPVQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPESHKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG K   I         D D              V  +    KP     +  G   
Sbjct: 580 ALREAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDVLNIYEKEKPLGVMVMFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +     +   ++I  T    +  +   +K        +   P     L      D    
Sbjct: 640 INLTEGLVKNGVKILGTSYESIDISEDREKFSKLLKELNINQPKGDYALTVEDAKDIALK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        +  +   Q +   +  ++  + G  +LI++Y+DG E+    + 
Sbjct: 700 LGFPLLVRPSYVIGGQSMEKVNTLQELIDYVKHATEISPGKPILIDKYIDGREVEIDAVA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + PA+   +     +        +A+  +G
Sbjct: 760 DGECVLI----PGIMEHIERAGVHSGDSFSIYPARNLSEREINTIIEYTERISKALNVKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F        V+ LE+N +   T     P M+   G    +L + +
Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPLVKLAVEI 859


>gi|222824388|ref|YP_002575962.1| carbamoylphosphate synthase, large subunit [Campylobacter lari
           RM2100]
 gi|222539609|gb|ACM64710.1| carbamoylphosphate synthase, large subunit [Campylobacter lari
           RM2100]
          Length = 1087

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L  ++    +   +         +         +P      
Sbjct: 89  TMGGQVALNVAMEVYESGELGDVKFLGANPQAIKKGEDRQIFKESMKKIGMDLPKSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V+            + + +   ++LIE+ +
Sbjct: 149 NYEEALKAVEEIGFPLMIRASFTLGGAGSGVVYNMDEFAELANTALALSPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENVDPMGVHTGDSITIAPALTLTDKEYQAMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPTNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 88/263 (33%), Gaps = 17/263 (6%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   +PD    ++H            L         +      L+ D
Sbjct: 617 FEPIDF-EHLRAVIDRERPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 673

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + +   G+      + +     +   + I  P +++P        + V+  +  +
Sbjct: 674 RKKFAKFIEDLGINQPKNGTAISVEEAIIKANEIGYPVLVRPSYVLGGRAMRVVHDESEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++   +    +LI+Q++D   EL    + D         +   +    E    S 
Sbjct: 734 RLYMQEAVDVSDKSPVLIDQFLDNATELDVDAISDGKDVYVAGIMEHIE----EAGIHSG 789

Query: 210 NSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
           +S   LPA    +   + +++        +G  G+    F       K++ +E+N +   
Sbjct: 790 DSACSLPAINIDETMLEMIEQKTKDIALNLGVVGLLNIQFAI--HDNKLYMIEVNPRASR 847

Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291
           T     P ++   G    ++   
Sbjct: 848 T----VPFVSKATGIPLAKVATR 866


>gi|319763188|ref|YP_004127125.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus
           denitrificans BC]
 gi|330825251|ref|YP_004388554.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus
           denitrificans K601]
 gi|317117749|gb|ADV00238.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus
           denitrificans BC]
 gi|329310623|gb|AEB85038.1| carbamoyl-phosphate synthase, large subunit [Alicycliphilus
           denitrificans K601]
          Length = 1083

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYRVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+++ K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLWRNGVLNKYRVELIGAKPEAIDKAEDRLKFKDAMTRIGLESARSGI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P VI+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKHVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 91/295 (30%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP+      
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ +          P   +       M
Sbjct: 644 GGQTPLKLALGLEREGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAM 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L+++++    + 
Sbjct: 704 EKASALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNESPVLLDRFLSN-AIE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  +   E++R        +
Sbjct: 763 CDVDCVRDATGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 822

Query: 239 GCRGISRSDFLFDPLS--RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F          ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 NVVGLMNVQFAIQETDAGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 873


>gi|85058398|ref|YP_454100.1| carbamoyl phosphate synthase large subunit [Sodalis glossinidius
           str. 'morsitans']
 gi|84778918|dbj|BAE73695.1| carbamoyl-phosphate synthase large subunit [Sodalis glossinidius
           str. 'morsitans']
          Length = 1074

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 92/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPIHWEVVRKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALELGREGVLKEFGVEMIGATADAIDKAEDRQRFDKAMKKIGLETARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +            +   +LLI++
Sbjct: 149 AHTMDEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICECGLDLSPTTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEIEVVRDKKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFSVNPKTGRLIIIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 648 LKLAHSLEAAGVPVIGTSPDSIDRAEDRERFQQAVERLGLKQPANATVTTIDLAVEKAAT 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +      + S ++   +L+++++D       V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDDTDLLRYFHNAVSVSNNAPVLLDRFLDD---AVEVDV 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 765 DAVCDGENVLIGGIMEHIEQAGVHSGDSACSLPAYTLSREIQDVMRQQVEKLAFELQVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G +  ++   
Sbjct: 825 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVALAKVAAR 867


>gi|300812995|ref|ZP_07093381.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
 gi|300496029|gb|EFK31165.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           delbrueckii subsp. bulgaricus PB2003/044-T3-4]
          Length = 1066

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 98/292 (33%), Gaps = 32/292 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG++   +         D D              V  ++   +PD A     G   
Sbjct: 581 ALKEAGYETIIVNNNPETVSTDFDIADRLYFEPLTAEDVQSIIELEQPDGAIVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   ++            P   ++      + + + 
Sbjct: 641 IKLSQDLMKMGVPILGTSADSVDAAEDRERFDEILGKCQIDRPKGQTVFTAEEALKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELTCGV 181
           +  P +++P       G+ +   D  +   +             +LI++Y+ G E     
Sbjct: 701 LGYPVLVRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECEVDA 760

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  + +   P KI  ++ + +   +    +A+  +
Sbjct: 761 ICDDEGILIPGIMEHVERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKALKVK 817

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+      KV+ +E+N +   T     P ++   G    ++   ++
Sbjct: 818 GLMNIQFIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDVATNVI 863



 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNV 57
           G     AL + G +V  I         D D +  + +               KPD     
Sbjct: 30  GTQACRALREEGIEVVLINSNPATIMTDGDMADHVYIEPLTVPVVKQLMEKEKPDALLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           + G    +  +    +  LE   +    +      ++ D++  K ++      V     +
Sbjct: 90  MGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFKNLMERIGEPVAKSVVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   +Q +          +   + LIEQ 
Sbjct: 150 NYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICSNGLRLSRVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAPSQTLSDKDYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+  +G     F  +P S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIITALNIKGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|217970147|ref|YP_002355381.1| carbamoyl phosphate synthase large subunit [Thauera sp. MZ1T]
 gi|217507474|gb|ACK54485.1| carbamoyl-phosphate synthase, large subunit [Thauera sp. MZ1T]
          Length = 1076

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVERIIDKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLGRHGVLAKYGVELIGASEEAIDKAEDRLKFKDAMTRIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFQEICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPQDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.5 bits (103), Expect = 0.021,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    +  +    ++H            G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDLLEIVHIEKPVGVIVQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++ +A   ++ +   V      P   +       +     
Sbjct: 642 LKRAQALEANGVPIIGTSPDMIDAAEDRERFQQLLVELGLRQPPNRTARTPAEAVRLAAE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D  E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGKQVMIGGIMEHIEQAG---VHSGDSACSLPPYTLSARLQDELRRQTEAMARALKVVG 818

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F          V+ LE+N +   T     P ++        ++   
Sbjct: 819 LMNVQFAIQGEGDNAVVYVLEVNPRASRT----VPFVSKACSLPLAKIAAR 865


>gi|226946317|ref|YP_002801390.1| carbamoyl phosphate synthase large subunit [Azotobacter vinelandii
           DJ]
 gi|226721244|gb|ACO80415.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Azotobacter vinelandii DJ]
          Length = 1073

 Score = 67.2 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGFRVILVNSNPATIMTDPTMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +L    +    +       + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALALEKHGVLTKFGVEMIGANADTIDKAEDRSRFDKAMRAIGLECPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMDEAYGVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICTRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATARSEDEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
            +   I  P V++P        + ++ ++  +   + ++   ++   +L++ +    IE+
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEDELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P  I  +++         
Sbjct: 762 DIDAVCDGEDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDDIREQVKKMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+             ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGQSLAKIAAR 866


>gi|256752676|ref|ZP_05493527.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
 gi|256748438|gb|EEU61491.1| D-alanine--D-alanine ligase [Thermoanaerobacter ethanolicus CCSD1]
          Length = 259

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 97/260 (37%), Gaps = 24/260 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           DL FN           ++ +  L      + G     ++ DK   K +V+S G+P    +
Sbjct: 2   DLIFNAS--------SMKEVAFLEVFNIPYVGSGLDVVATDKRMRKDIVASHGLPTPKYV 53

Query: 112 LVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLI 168
           +            +  P  +KP+ G  S GI              ++   +   G   LI
Sbjct: 54  IAENPQEIPSVDHLKFPLFVKPISGRGSAGIDEENIIYDKDKLPQVVSKITEKIGQAALI 113

Query: 169 EQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           E++++G E+T G++G     V         +   +        N     P ++P ++ ++
Sbjct: 114 EEFIEGKEVTVGIIGYKHPQVLPLLEVGYNNVKTNTYEHKMFDNEIIKCPIEVPKEVEEK 173

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----------IFPE 276
           ++  A   ++ +  +  +R D +        ++LE+N   G+T  S              
Sbjct: 174 IKETALNIYKVLNAKDFARIDMILS-KDNVPYFLELNTFAGLTMSSSKGEKHVHHGYMGY 232

Query: 277 MAAYAGYSFRELLLWMVEDA 296
           MA  AG +  E +  ++E A
Sbjct: 233 MAKAAGLTRGEFIGKIIESA 252


>gi|255321830|ref|ZP_05362980.1| carbamoyl-phosphate synthase, large subunit [Campylobacter showae
           RM3277]
 gi|255300934|gb|EET80201.1| carbamoyl-phosphate synthase, large subunit [Campylobacter showae
           RM3277]
          Length = 1115

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  I         D D             S+  ++   K D    
Sbjct: 29  SGTQAAKTLKQLGYRVVLINSNPATIMTDPDFADATYVEPITKESIKRIIDKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q     +L  ++    +   +       + +         +P      
Sbjct: 89  TMGGQVALNVAMQLYEADMLGGVKFLGANPQAIKKGEDRQEFKKAMQKIGMDLPQSQYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V                 +   ++L+E+ +
Sbjct: 149 DMDEALAAAANIGFPLIIRASYTLGGAGSGVAYNIDEFKELAQTGLDASPIHEILVEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 40.6 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 35/277 (12%), Positives = 84/277 (30%), Gaps = 26/277 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ H  PD       G        +  +   +I  T +  +  A    
Sbjct: 625 FEPIDF-EHVRAVIEHENPDGVIVHFGGQTPLKFAKRLSIAGAKIIGTSARTIDVAEDRK 683

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P   +    +  ++    I  P +++P        +  +  D+ + L
Sbjct: 684 KFSEFISKIGVKQPRNDTATSEKEALEKAAAIGYPVLVRPSYVLGGRAMRRVHSDEELRL 743

Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            + ++   ++   +LI+++  D +EL    + D         +   +           ++
Sbjct: 744 YMSEAVKVSNHSPVLIDKFLQDAVELDVDAISDGKDVYIGAIMQHIEEAGIHSG---DSA 800

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS----------------- 254
             + P  +   + ++V+         +G  G+    F                       
Sbjct: 801 CILPPLNLTAQMIEKVENQTCDIALNLGVVGLMNIQFAIYENKQSDGEADVSEGSEATGQ 860

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            ++F +E+N +   T     P ++   G    ++   
Sbjct: 861 NELFMIEVNPRASRT----VPFVSKATGVPMAKVATR 893


>gi|1001668|dbj|BAA10403.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Synechocystis sp. PCC 6803]
          Length = 1105

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                     +   V  ++   +PD    
Sbjct: 53  SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 112

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A  +  D+   K+ ++  GVPVCPS +
Sbjct: 113 TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 172

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P    +  G  +    +     +      +   Q+L+E
Sbjct: 173 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 232

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 233 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 292

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +  
Sbjct: 293 SIAIIREIGVETGGSNIQFSVNPANGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 348

Query: 290 LWM 292
             +
Sbjct: 349 AKL 351



 Score = 41.0 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 89/298 (29%), Gaps = 38/298 (12%)

Query: 22  CASA--LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59
           C +A  L DAG++   +         D D S  L    L  +   N++            
Sbjct: 606 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIIQF 665

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                        +           +I  T    + +A   ++            P    
Sbjct: 666 GGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGI 725

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +    + IS P V++P        + ++  D+ +   +  +        +LI++
Sbjct: 726 ARDYEESRVVANRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDK 785

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++   +   V          +     +       +S  ++  +    +  ++   +++ 
Sbjct: 786 FLEN-AIEVDVDSLTDSTGKVVIGSIMEHIEEAGIHSGDSACSIPYTSLSDNVLTTIRQW 844

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +A+   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 845 TEQLARALNVVGLMNIQYAV--QGDQVYILEANPRASRT----VPYVSKATGRPLAKI 896


>gi|161344753|ref|NP_442333.2| carbamoyl phosphate synthase large subunit [Synechocystis sp. PCC
           6803]
 gi|22095495|sp|Q55756|CARB_SYNY3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1081

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                     +   V  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLVNSNPASIMTDPELADRTYIEPLIPEIVEKIIEKERPDAVLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A  +  D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVSLSKSGVLEKYGVELIGAKLPAIEMGEDRELFKEAMARIGVPVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + S P +I+P    +  G  +    +     +      +   Q+L+E
Sbjct: 149 ASSIEEARQVAHEIGSYPLIIRPAFTLAGTGGGIAYNQEEYEEMVQYGLDQSPMSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SIAIIREIGVETGGSNIQFSVNPANGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 41.0 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 35/298 (11%), Positives = 89/298 (29%), Gaps = 38/298 (12%)

Query: 22  CASA--LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59
           C +A  L DAG++   +         D D S  L    L  +   N++            
Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPVGIIIQF 641

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                        +           +I  T    + +A   ++            P    
Sbjct: 642 GGQTPLKLAVPLQKYLNSPDCPVQTKIWGTSPDSIDTAEDRERFEKILHELEISQPPNGI 701

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +    + IS P V++P        + ++  D+ +   +  +        +LI++
Sbjct: 702 ARDYEESRVVANRISYPVVVRPSYVLGGRAMEIVYSDEELERYMTYAVQIEPDHPILIDK 761

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++   +   V          +     +       +S  ++  +    +  ++   +++ 
Sbjct: 762 FLEN-AIEVDVDSLTDSTGKVVIGSIMEHIEEAGIHSGDSACSIPYTSLSDNVLTTIRQW 820

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                +A+   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 821 TEQLARALNVVGLMNIQYAV--QGDQVYILEANPRASRT----VPYVSKATGRPLAKI 872


>gi|223038584|ref|ZP_03608877.1| carbamoyl-phosphate synthase, large subunit [Campylobacter rectus
           RM3267]
 gi|222879986|gb|EEF15074.1| carbamoyl-phosphate synthase, large subunit [Campylobacter rectus
           RM3267]
          Length = 1097

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  I         D D             S+  ++   K D    
Sbjct: 29  SGTQAAKTLKQLGYRVVLINSNPATIMTDPDFADATYVEPITKESIKRIIDKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +Q     +L  ++    +   +       + +         +P      
Sbjct: 89  TMGGQVALNVAMQLYEADMLGGVKFLGANPQAIKKGEDRQEFKKAMQKIGMDLPQSQYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+        G  V                 +   ++L+E+ +
Sbjct: 149 DMDEALAAAANIGFPLIIRASYTLGGAGSGVAYNIDEFKELAQTGLDASPIREILVEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/260 (13%), Positives = 83/260 (31%), Gaps = 11/260 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ H  PD       G        +  +   +I  T +  +  A    
Sbjct: 626 FEPIDF-EHVRAVIEHENPDGVIVHFGGQTPLKFAKRLSIAGAKIIGTSARTIDVAEDRK 684

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P   +    +  ++    I  P +++P        +  +   + + L
Sbjct: 685 KFSEFISKIGVKQPRNDTATSEKEALEKAAAIGYPVLVRPSYVLGGRAMRRVHDGEELCL 744

Query: 153 DLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            + ++   ++   +LI+++  D +EL    + D         +   +           ++
Sbjct: 745 YMSEAVKVSNHSPVLIDKFLQDAVELDVDAISDGKDVYIGAVMQHIEEAGIHSG---DSA 801

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +   + ++V+         +G  G+    F       ++F +E+N +   T  
Sbjct: 802 CILPPLNLTAQMIEKVENQTRDIALNLGVVGLMNIQFAI--YENELFMIEVNPRASRT-- 857

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 858 --VPFVSKATGVPMAKVATR 875


>gi|322499742|emb|CBZ34816.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 529

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            +ID  R+V  ++   K D+ FN+  G   E      ++E LE          S      
Sbjct: 16  KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 75

Query: 94  MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
               +++       VP    +  +         +  P ++K L G +S+GI    +  ++
Sbjct: 76  KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 135

Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                         +  L+E+++ G E T     D              F   +      
Sbjct: 136 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 195

Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +     Y                        +   G  R DF  D L+ + +
Sbjct: 196 YFEKKWTMECGDQAYGFLASSDPAYTAITDMARNAFKYIMSGVGYGRVDFRIDELTGEPY 255

Query: 259 WLEINVQPGM 268
           +LEIN   GM
Sbjct: 256 FLEINPNCGM 265


>gi|146089042|ref|XP_001466217.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070319|emb|CAM68656.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 529

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 76/250 (30%), Gaps = 15/250 (6%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
            +ID  R+V  ++   K D+ FN+  G   E      ++E LE          S      
Sbjct: 16  KKIDSYRTVRKLVTSNKYDVFFNLCDGGRDEKRAGVDVVEALEEQNAAFTGTDSRGFEPS 75

Query: 94  MRSKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
               +++       VP    +  +         +  P ++K L G +S+GI    +  ++
Sbjct: 76  KIDMKLMVGSSGVKVPNFVLLSNDESLAKKCRHLKFPVIVKHLSGYASVGIQKDSRCDTL 135

Query: 151 PL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                         +  L+E+++ G E T     D              F   +      
Sbjct: 136 DQLRTKVRGFIKEYNHALVEEFIRGREGTVLACADPGSPFGVKVFKPLMFNFLQNNDDFA 195

Query: 210 NSTHVLPAKIPLDIYKE-----------VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                   +     Y                        +   G  R DF  D L+ + +
Sbjct: 196 YFEKKWTMECGDQAYGFLASSDPAYTAITDMARNAFKYIMSGVGYGRVDFRIDELTGEPY 255

Query: 259 WLEINVQPGM 268
           +LEIN   GM
Sbjct: 256 FLEINPNCGM 265


>gi|153813957|ref|ZP_01966625.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756]
 gi|317501485|ref|ZP_07959683.1| carbamoylphosphate synthase large subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|331088043|ref|ZP_08336964.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145848353|gb|EDK25271.1| hypothetical protein RUMTOR_00164 [Ruminococcus torques ATCC 27756]
 gi|316897114|gb|EFV19187.1| carbamoylphosphate synthase large subunit [Lachnospiraceae
           bacterium 8_1_57FAA]
 gi|330408999|gb|EGG88458.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1059

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 93/291 (31%), Gaps = 29/291 (9%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
             + +AG++   I+ +                       V  V+   +PD     L G  
Sbjct: 576 KTIRNAGYEAIVINNNPETVSTDYTTSDKLYFEPLCVEDVMNVIELERPDGVIASLGGQT 635

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    +  A + +         S   P   ++      + +  
Sbjct: 636 AVNLAEPLESRGVTIIGTDCEAIEKAENRESFEKLLAALSIPQPKGQAVTNIEDGVKAAA 695

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++ K++ +   L  +   N    +L++ Y+ G E+    +
Sbjct: 696 AIGYPVLVRPSFVLGGRAMQIVAKEEQLRQYLKTAVEINEEKPVLVDHYIRGKEVEIDGI 755

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +        S         +    ++  +  R   L    IG RG
Sbjct: 756 CDGQDVFVPGIMELVERTGVHSGDSISVYPSYSISDHVKEVILDYTRRLGLG---IGIRG 812

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+ D     V+ +E+N +   T     P ++   GYS  ++   ++
Sbjct: 813 LFNIQFIVDQEEN-VYIIEVNPRSSRT----VPFLSKATGYSLADIATRVI 858



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRSV---------------------GLVLAHLKPDLAFNV 57
           G     AL++ G++V   + + +                        ++ H +PD     
Sbjct: 30  GTQACLALKEEGYEVILCNSNPATIMTDPAIADKVYMEPLTLEYMAKIVRHERPDAIVPG 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           + G  G +  +Q            E+  T S  +  A   +  +         V      
Sbjct: 90  IGGQTGLNLAMQLEKKGVLKECQTELLGTGSESIRQAEDRELFKELCEKLGEPVLPSLVA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 + +   I  P V++P       G      +Q     +  + + +   Q+L+E+ 
Sbjct: 150 NTAEEALQAAKTIGYPVVLRPAFTLGGTGGGFADDEQEFLGLIHNALALSPVHQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IKG-FKEIEYEVIRDSNDTAITVCNMENLDPVGIHTGDSIVVCPSQTLTNKEYQMLRDSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +  +GY    +   
Sbjct: 269 LRLIRALRVEGGCNVQFALDPHSFRYYVIEVN--PRVSRSS--ALASKASGYPIARVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|295107546|emb|CBL05089.1| carbamoyl-phosphate synthase large subunit [Gordonibacter pamelaeae
           7-10-1-b]
          Length = 1074

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  ++ +                       V  V+   +PD    
Sbjct: 29  SGAQACKVLKADGYRVVLVNSNPATIMTDPGLADRTYVEPITPEFVEQVIVKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      IL+   +      + A     D+    + ++  G+    S  
Sbjct: 89  TLGGQTGLNTAVDLARAGILDKYGVEMIGCDLAAIERGEDRKLFNECMAELGIETSRSGY 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYSLADAEAIVAELGYPVVLRPSFTLGGAGGGIAHDQAELHEIVGQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +F +  +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPDNGRMIVIEMN--PRVSRSSALASKATGFPIAKAAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AGF+   +         D D              V  ++   +PD     L G   
Sbjct: 587 ALAEAGFETIMVNCNPETVSTDYDTSDKLYFEPLTFEDVMDIVDVERPDGVVVTLGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   D+  +     +   P        +        
Sbjct: 647 LKLANALAEAGVPIMGTSPEAIDLAEDRDRFSAILDEMAITYPAAGMASTYQEACVVADQ 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++     +   + +++  +    + ++++++G      V  
Sbjct: 707 IGFPLLVRPSYVLGGRGMGIVYDGAQLEKYMAEAAKISPDHPVYLDRFLEG---AVEVDL 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           DA  D +++ V     +       S +S    P     + +  +++ +A      +G  G
Sbjct: 764 DALCDGSQVYVGGVLEHIEMAGIHSGDSACCTPPFALSEALVSQLRSVARDLALRLGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F      + ++ +E N +   T     P ++   G    ++   +
Sbjct: 824 LINIQFAI--KDQVIYIIEANPRASRT----VPFVSKATGVPLAKMAARI 867


>gi|224823860|ref|ZP_03696969.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum
           2002]
 gi|224604315|gb|EEG10489.1| carbamoyl-phosphate synthase, large subunit [Lutiella nitroferrum
           2002]
          Length = 1070

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D +            V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPINWQVVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTMEESLAAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFATNPDTGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 99/294 (33%), Gaps = 36/294 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL ++GF+   +         D D S  L    L  +    + H            G   
Sbjct: 582 ALRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEICHVEKPFGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++  A   ++ +          P   +       M     
Sbjct: 642 LKLARALEANGVPIIGTTPDMIDCAEDRERFQKMLQELGLKQPPNRTARTPADAMRLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   + ++   ++   +L++++  D IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDAV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  L V    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGELVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPAVQDEIRRQTVAMAKALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP--EMAAY--AGYSFRE 287
           +    F        ++ LE+N       P ++ V+  P  ++AA   AG S  E
Sbjct: 819 LMNVQFAI--QGDTIYVLEVNPRASRTVPFVSKVTGAPLAKIAARCMAGISLTE 870


>gi|110834753|ref|YP_693612.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis
           SK2]
 gi|110647864|emb|CAL17340.1| urea carboxylase/allophanate hydrolase [Alcanivorax borkumensis
           SK2]
          Length = 1195

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ +    +++            +++++    + +      
Sbjct: 147 AEKIRYPVMLKSTAGGGGIGMQICDNAENLDKAWDSVRRLSANNFSNDGVFIEKYIARAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD       +            K         LP  +  +++      A    
Sbjct: 207 HIEVQVFGDGKGQAVTLGERDCSAQRRHQKVLEETPAPNLPDHVRHELHD----TARTLM 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           QA+  R     +F+ D  +   ++LE+N +     G+T            G    +L+ W
Sbjct: 263 QAVHYRNAGTVEFILDQDTNTFYFLEVNTRLQVEHGVTE--------QIFGV---DLVEW 311

Query: 292 MVEDAS 297
           M++ A+
Sbjct: 312 MIKLAA 317


>gi|330447390|ref|ZP_08311039.1| carbamoyl-phosphate synthase large subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328491581|dbj|GAA05536.1| carbamoyl-phosphate synthase large subunit [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 1072

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLERHGVLEEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICSRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTTMEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMREQVKNLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDGQVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|319401503|gb|EFV89713.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Staphylococcus epidermidis FRI909]
          Length = 1057

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +    +  + +   
Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALKNARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D    ++       + +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|312622240|ref|YP_004023853.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202707|gb|ADQ46034.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1077

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQ 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIIDYTIKLARALRVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P + +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNNMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|293366832|ref|ZP_06613508.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291319133|gb|EFE59503.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329736674|gb|EGG72940.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU045]
          Length = 1057

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++A ++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNADYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +    +  +++   
Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D    ++       + +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|251810633|ref|ZP_04825106.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876365|ref|ZP_06285232.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
 gi|251805793|gb|EES58450.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295390|gb|EFA87917.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis SK135]
          Length = 1057

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +    +  +++   
Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D    ++       + +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|57866726|ref|YP_188352.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242242485|ref|ZP_04796930.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
 gi|81819410|sp|Q5HPY8|CARB_STAEQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|57637384|gb|AAW54172.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis RP62A]
 gi|242234059|gb|EES36371.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis W23144]
          Length = 1057

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     S   P   +    +  + +   
Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREISVPQPQGKTATSPKEALKNARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D    ++       + +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|27467797|ref|NP_764434.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|38257574|sp|Q8CPJ4|CARB_STAES RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|27315341|gb|AAO04476.1|AE016746_266 carbamoyl-phosphate synthase large chain [Staphylococcus
           epidermidis ATCC 12228]
 gi|329729964|gb|EGG66355.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU144]
 gi|329736345|gb|EGG72617.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU028]
          Length = 1057

 Score = 66.8 bits (161), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICHNDAELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +     +   P   +    +  +++   
Sbjct: 640 INLADKLAQHGVKILGTSLEDLNRAEDRKEFEALLREIAVPQPQGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D    ++       + +  +G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLTQDEINTLEDYTIKLAKGLNIKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|304410332|ref|ZP_07391951.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS183]
 gi|307301957|ref|ZP_07581715.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           BA175]
 gi|304351741|gb|EFM16140.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS183]
 gi|306913995|gb|EFN44416.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           BA175]
          Length = 1074

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++   Q +     ++ S ++   +L+++++D        + 
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  +   + P  +  +I   ++         +G  G+
Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|153001909|ref|YP_001367590.1| carbamoyl phosphate synthase large subunit [Shewanella baltica
           OS185]
 gi|151366527|gb|ABS09527.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS185]
          Length = 1074

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++   Q +     ++ S ++   +L+++++D        + 
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  +   + P  +  +I   ++         +G  G+
Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|160876631|ref|YP_001555947.1| carbamoyl phosphate synthase large subunit [Shewanella baltica
           OS195]
 gi|217972239|ref|YP_002356990.1| carbamoyl phosphate synthase large subunit [Shewanella baltica
           OS223]
 gi|160862153|gb|ABX50687.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS195]
 gi|217497374|gb|ACK45567.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS223]
 gi|315268829|gb|ADT95682.1| carbamoyl-phosphate synthase, large subunit [Shewanella baltica
           OS678]
          Length = 1074

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++   Q +     ++ S ++   +L+++++D        + 
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  +   + P  +  +I   ++         +G  G+
Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|126175504|ref|YP_001051653.1| carbamoyl phosphate synthase large subunit [Shewanella baltica
           OS155]
 gi|125998709|gb|ABN62784.1| carbamoyl-phosphate synthase large subunit [Shewanella baltica
           OS155]
          Length = 1074

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMEEAYGVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++   Q +     ++ S ++   +L+++++D        + 
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDRFLDDAIEVD--ID 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  +   + P  +  +I   ++         +G  G+
Sbjct: 765 AVCDGEIVVIGAIMEHIEQAGVHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 825 MNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|253576161|ref|ZP_04853493.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
 gi|251844504|gb|EES72520.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp. oral
           taxon 786 str. D14]
          Length = 1070

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLEFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    I
Sbjct: 90  LGGQTGLNMAVELARAGVLERENVKLLGTQLTSIEKAEDRDLFRELMRELEQPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  +   ++ +   +     ++   Q LIE+ 
Sbjct: 150 TSVEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVASGIRYSPIGQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEIEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPQSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 589 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEEEKPVGVIVQFGGQTA 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A    K  +         P   ++      + +   
Sbjct: 649 INLAAPLQAAGVRILGTSLESIDEAEDRKKFEALLSKLGIAQPKGSTVTSVEEAVGTAQA 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  DQ +   + ++ + N    +LI++Y+ G E+    + 
Sbjct: 709 LGYPVLVRPSYVLGGRAMEIVYSDQELLRYMEEAVNINPQHPVLIDRYMLGKEVEVDAIS 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  ++ +++  +     + +   G+
Sbjct: 769 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQHLSAELKEKIVEITVKIARELKTVGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+    + +VF +E+N +   T     P ++         +    +
Sbjct: 826 VNIQFVI--YNNEVFVIEVNPRSSRT----VPFLSKVTNIPMANVATQCI 869


>gi|260767327|ref|ZP_05876266.1| carbamoyl-phosphate synthase large chain [Vibrio furnissii CIP
           102972]
 gi|260617650|gb|EEX42830.1| carbamoyl-phosphate synthase large chain [Vibrio furnissii CIP
           102972]
 gi|315181119|gb|ADT88033.1| carbamoyl phosphate synthase large subunit [Vibrio furnissii NCTC
           11218]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G              +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLACPRADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYRVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPQNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDESDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAMELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|288940453|ref|YP_003442693.1| carbamoyl-phosphate synthase large subunit [Allochromatium vinosum
           DSM 180]
 gi|288895825|gb|ADC61661.1| carbamoyl-phosphate synthase, large subunit [Allochromatium vinosum
           DSM 180]
          Length = 1069

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     R++  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWRALASIIEQERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +LE   +    +   A   + D+   +Q +   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLEKFGVELIGASREAIDKAEDRDLFRQAMRKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEAIQVQAPIGFPTIIRPSFTMGGSGGGIAYNQEEFEEICRRGLDLSPTKELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDHADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 97/303 (32%), Gaps = 36/303 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ + G++   +         D D              V  ++   KP        G   
Sbjct: 587 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEKEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       ++    
Sbjct: 647 LKLARALEAAGVPIIGTTPDSIDLAEDRERFQQLIQELGLRQPPNATARSEDEAVERAAA 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   + ++   ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDETDLKRYMREAVRVSNESPVLLDRFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  ++  + P  +   I   ++       +A+   G
Sbjct: 767 CDGNEVLIGGIMEHIEQAG---VHSGDSACSLPPYTLSPAIQDRMREQMVKMARALNVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM-----VEDAS 297
           +  + F       ++F LE+N +   T     P ++   G    ++         +E+  
Sbjct: 824 LMNAQFAI--KGDEIFILEVNPRASRT----VPFVSKAIGVPLAKVAARCMAGRSLEEQG 877

Query: 298 CLR 300
           C R
Sbjct: 878 CRR 880


>gi|312135338|ref|YP_004002676.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
 gi|311775389|gb|ADQ04876.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
          Length = 1077

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAEK 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVFSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLTEKVKEKIVDYTIKLARALKVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVFLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +D    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIDFAREVGYPVIVRPAYTLGGTGGGIAYNEEELKYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQILRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|307323017|ref|ZP_07602266.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
 gi|306891336|gb|EFN22273.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           AK83]
          Length = 280

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 50/255 (19%), Positives = 98/255 (38%), Gaps = 13/255 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--------S 101
           + +   N+LHG FGEDG +Q +  L  +  +      ++L+M+K      V         
Sbjct: 8   RNEYVVNLLHGQFGEDGGIQTLAALSGVTGSFGDPHVASLTMNKYAMSAFVSSLLPAERI 67

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSS 159
                   +       ++    +  P+V+KP   GSSL   +     S   ++       
Sbjct: 68  RVPKTTLITPRNVDQLINIARSLDRPFVVKPNSLGSSLFAQLFDDPISSDEEIHTLLRKI 127

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE--LKYSSLNSTHVLPA 217
           + +    +I++++ G E TCG +  +S  +    V       +    +  S N       
Sbjct: 128 FTYDTAAVIQEFISGDEYTCGCLISSSEVIPLPIVKLEADNEFCGRDQKYSKNVAKKSVV 187

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +I + +Q +A     +I    ++R DF       ++++LE N  PG      F +M
Sbjct: 188 NRNDEISERIQNIATSIASSIDLYNMARFDFRVSDED-EIWFLECNYIPGTAKNGSFEKM 246

Query: 278 AAYAGYSFRELLLWM 292
               G +  +L+  +
Sbjct: 247 LNSYGMTVVDLISRI 261


>gi|262404705|ref|ZP_06081260.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586]
 gi|262349737|gb|EEY98875.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC586]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|262170662|ref|ZP_06038340.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451]
 gi|261891738|gb|EEY37724.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus MB-451]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|258620887|ref|ZP_05715921.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573]
 gi|262166435|ref|ZP_06034172.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223]
 gi|258586275|gb|EEW10990.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM573]
 gi|262026151|gb|EEY44819.1| carbamoyl-phosphate synthase large chain [Vibrio mimicus VM223]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|229514020|ref|ZP_04403482.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21]
 gi|229524376|ref|ZP_04413781.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv.
           albensis VL426]
 gi|254285956|ref|ZP_04960917.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           AM-19226]
 gi|150423866|gb|EDN15806.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           AM-19226]
 gi|229337957|gb|EEO02974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae bv.
           albensis VL426]
 gi|229349201|gb|EEO14158.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TMA 21]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|153825895|ref|ZP_01978562.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2]
 gi|149740393|gb|EDM54524.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-2]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|90412472|ref|ZP_01220475.1| carbamoyl-phosphate synthase large subunit [Photobacterium
           profundum 3TCK]
 gi|90326509|gb|EAS42915.1| carbamoyl-phosphate synthase large subunit [Photobacterium
           profundum 3TCK]
          Length = 1073

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIAKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        +   Q +L+   +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALELEKQGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPNADT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 96/289 (33%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++   +
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTAMEQAIEKSRI 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---AVEVDV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   ++         +G RG
Sbjct: 764 DAICDGEQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMREQVTKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|121727498|ref|ZP_01680616.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52]
 gi|121630166|gb|EAX62568.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V52]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAVEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|15642386|ref|NP_232019.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121591079|ref|ZP_01678391.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           2740-80]
 gi|147673654|ref|YP_001217891.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae O395]
 gi|153217328|ref|ZP_01951079.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587]
 gi|153802029|ref|ZP_01956615.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3]
 gi|153823336|ref|ZP_01976003.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33]
 gi|153828839|ref|ZP_01981506.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           623-39]
 gi|227082512|ref|YP_002811063.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2]
 gi|229507548|ref|ZP_04397053.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX
           330286]
 gi|229512256|ref|ZP_04401735.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33]
 gi|229519392|ref|ZP_04408835.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9]
 gi|229521221|ref|ZP_04410641.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM
           11079-80]
 gi|229528623|ref|ZP_04418013.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)]
 gi|229607054|ref|YP_002877702.1| carbamoyl phosphate synthase large subunit [Vibrio cholerae
           MJ-1236]
 gi|254849511|ref|ZP_05238861.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10]
 gi|255746936|ref|ZP_05420881.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101]
 gi|262161521|ref|ZP_06030631.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE
           91/1]
 gi|262168373|ref|ZP_06036070.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27]
 gi|298500250|ref|ZP_07010055.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK
           757]
 gi|22095535|sp|Q9KPH9|CARB_VIBCH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|9656961|gb|AAF95532.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121547084|gb|EAX57220.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           2740-80]
 gi|124113657|gb|EAY32477.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae 1587]
 gi|124122439|gb|EAY41182.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MZO-3]
 gi|126519143|gb|EAZ76366.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae B33]
 gi|146315537|gb|ABQ20076.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395]
 gi|148875715|gb|EDL73850.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae
           623-39]
 gi|227010400|gb|ACP06612.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae M66-2]
 gi|227014283|gb|ACP10493.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae O395]
 gi|229332397|gb|EEN97883.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae 12129(1)]
 gi|229341753|gb|EEO06755.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae TM
           11079-80]
 gi|229344081|gb|EEO09056.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC9]
 gi|229352221|gb|EEO17162.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae B33]
 gi|229355053|gb|EEO19974.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae BX
           330286]
 gi|229369709|gb|ACQ60132.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae MJ-1236]
 gi|254845216|gb|EET23630.1| carbamoyl-phosphate synthase [Vibrio cholerae MO10]
 gi|255735338|gb|EET90738.1| carbamoyl-phosphate synthase large chain [Vibrio cholera CIRS 101]
 gi|262023265|gb|EEY41969.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae RC27]
 gi|262028832|gb|EEY47486.1| carbamoyl-phosphate synthase large chain [Vibrio cholerae INDRE
           91/1]
 gi|297540943|gb|EFH76997.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae MAK
           757]
 gi|327484885|gb|AEA79292.1| Carbamoyl-phosphate synthase large chain [Vibrio cholerae
           LMA3894-4]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|152992698|ref|YP_001358419.1| carbamoyl phosphate synthase large subunit [Sulfurovum sp. NBC37-1]
 gi|151424559|dbj|BAF72062.1| carbamoylphosphate synthase, large subunit [Sulfurovum sp. NBC37-1]
          Length = 1091

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 88/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I+                    ++   +  ++     D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFAHRTYIEPINEEVIAKIIKKENVDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE +E    +   +       + +   +     +P+     
Sbjct: 89  TMGGQTALNVAMSMHDKGMLEGVEFLGANPAAIKKGEDRQEFKEAMIKIGMDLPISQYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D+   I  P +I+     +  G  V          +      +   ++LIE+ +
Sbjct: 149 NMDEALDAAKNIGFPLIIRASYTLAGGGSGVAYNMDEFKEIVRGGLEASPISEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENFDPMGVHTGDSITMAPALTLTDKEYQHMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREVGVDTGGSNVQFSINPDTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD    ++H        +   L  +    + +      L+ D
Sbjct: 621 FEPIDF-EHVRNVIELENPDGV--IVHFGGQTPLKLAKNLTAIGAKISGTSAKVIDLAED 677

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +      ++  G+      +       M   + I  P +++P       G+  +  D  +
Sbjct: 678 RELFSNFITELGLKQPENGTAFAKDEAMAIANRIGYPVLVRPSFVLGGRGMRTVYNDAEL 737

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++ S ++   +LI++++D  IEL    + D         +   +           
Sbjct: 738 REYMDEAVSVSNDAPVLIDKFLDNAIELDVDAICDGKDVYIGSVMQHIEEAGIHSG---D 794

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I  ++  EV+         +G  G+    +       +++ +E+N +   T
Sbjct: 795 SACSLPPVSISDELIAEVKEQTAEIALDLGVIGLLNIQYAIHR--GEIYLIEVNPRASRT 852

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 853 ----VPFVSKATGVPLAKVATR 870


>gi|119897673|ref|YP_932886.1| carbamoyl phosphate synthase large subunit [Azoarcus sp. BH72]
 gi|119670086|emb|CAL93999.1| Carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Azoarcus sp.
           BH72]
          Length = 1075

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPETADVTYIEPITWQVVERIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLARHGVLEKYGVELIGASGEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSLEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFHDICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    +  +    ++H            G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDILEIVHIEKPVGVIVQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 642 LKRAQALQDNGVPIIGTSPDMIDAAEDRERFQKLLNDLGLKQPPNRTARTPEAAVRLAAE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D  E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGEQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAKLQDELRRQTEAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F          V+ LE+N +   T     P ++        ++   
Sbjct: 819 LMNVQFAIQGEGDNAVVYVLEVNPRASRT----VPFVSKACSLPLAKIAAR 865


>gi|310642960|ref|YP_003947718.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa
           SC2]
 gi|309247910|gb|ADO57477.1| Carbamoyl-phosphate synthase, large subunit [Paenibacillus polymyxa
           SC2]
          Length = 1071

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGVEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGVLERENVKLLGTQLNSIEKAEDRDLFRDLMRELEQPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +++  + I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTLEESLEFANEIGYPIIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPIGQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDGNDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 90/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A    K        +   P   ++      + +   
Sbjct: 648 INLAAPLSAAGVNILGTSLESIDEAEDRKKFEQLLSRLAIAQPKGNTVTSVDEAVGTAQA 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLRYMEEAVKINPEHPVLIDRYMLGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  ++ K+V  +     + +   G+
Sbjct: 768 DGETVLVPGIMEHVERAG---VHSGDSIAVYPPQHLSDELKKKVVDITISIAKELKTIGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++         L    +
Sbjct: 825 VNIQFVIHQ--DEVYVIEVNPRSSRT----VPFLSKVTNIPMANLATQAI 868


>gi|296120606|ref|YP_003628384.1| carbamoyl-phosphate synthase, large subunit [Planctomyces
           limnophilus DSM 3776]
 gi|296012946|gb|ADG66185.1| carbamoyl-phosphate synthase, large subunit [Planctomyces
           limnophilus DSM 3776]
          Length = 1090

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + +            V  ++ + +PD    
Sbjct: 29  SGTQACKALRECGYEVVLVNSNPATIMTDPNTADSTYIEPIHWQYVAKIIENERPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  ++      LE        +       + D+   K+ +   G+ VC S  
Sbjct: 89  TLGGQTGLNTGMELFRRGILEKYNCEMIGARADVIEKAEDRQLFKEAMQKIGLDVCRSRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D    I  P +I+       +G  +    +     + +    +  +++L+E+
Sbjct: 149 VNSMEEARDVLKEIGLPIIIRASFTLGGMGGGIAYNREEFEEKVRKGIELSPINEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVMRDKADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRMRDAT 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMREIGVETGGSNVQFAIHPQTGRMVVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   ++                         V  +   L+PD       G   
Sbjct: 594 ALRELGIESVMVNSNPETVSTDYDTSDLLFFEPLTTEDVLNICDRLQPDGVIVQFGGQTP 653

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++ +A   +  +          P           +     
Sbjct: 654 LNLARGLEQAGVKIIGTSPSMIDAAEDREIFKGILDKLGLHQPPNGMATDAARAVQIASE 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +   ++ +   + ++ + +    +LI+++++          
Sbjct: 714 IGYPVLVRPSFVLGGRAMQICYDERMVREYMTEAVNVSPDRPVLIDKFLEDAVEVDV--D 771

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             S     +     +       +S  ++  + P  +P  I  E++   +   + +  RG+
Sbjct: 772 AISDGEITVVGGVMEHIEEAGVHSGDSACVLPPYSLPDAIVDEIKTATYALAKELQVRGL 831

Query: 244 SRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F       +   + LE+N +   T     P ++        +L   +
Sbjct: 832 MNIQFAVKHQGGEPVVYVLEVNPRASRTS----PFVSKATNVPLPKLAAKI 878


>gi|261211488|ref|ZP_05925776.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341]
 gi|260839443|gb|EEX66069.1| carbamoyl-phosphate synthase large chain [Vibrio sp. RC341]
          Length = 1076

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|24372725|ref|NP_716767.1| carbamoyl phosphate synthase large subunit [Shewanella oneidensis
           MR-1]
 gi|24346791|gb|AAN54212.1|AE015558_6 carbamoyl-phosphate synthase, large subunit [Shewanella oneidensis
           MR-1]
          Length = 1074

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 94/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  +I   ++         +G  G
Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|312793754|ref|YP_004026677.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312876847|ref|ZP_07736824.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311796362|gb|EFR12714.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|312180894|gb|ADQ41064.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1077

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEK 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSRDELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSEKVKEKIVDYTIKLARALKVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D  +  V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KNENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEDLRYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|317050357|ref|YP_004111473.1| carbamoyl-phosphate synthase large subunit [Desulfurispirillum
           indicum S5]
 gi|316945441|gb|ADU64917.1| carbamoyl-phosphate synthase, large subunit [Desulfurispirillum
           indicum S5]
          Length = 1087

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                     +  ++   +P     
Sbjct: 29  SGTQAIKALKEEGYEVVLINSNPATIMTDAQMADATYIEPITASVIEKIIEKERPCAILP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPS 110
            + G    +  V+     IL+   +    + + A     D+   K+ ++  G+ +  C  
Sbjct: 89  TVGGQTALNAAVEVAETGILKKYNVEMIGANLKAIQKGEDRELFKEAMNRIGLEMPRCGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +     +      +   ++LI++
Sbjct: 149 AHSLEEARKIVREMGLPAIIRPSFTLGGSGGGIAYNMEEFDEIVASGLDASPSREILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SIIGWKEYEMEVMRDKNDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQLMRDAT 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVIREIGVDTGGSNVQFAVNPDDGRLVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 90/286 (31%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              +  ++   KP        G   
Sbjct: 592 ALSEDGFETIMVNCNPETVSTDYDTSDRLYFEPVTREDILSIVEKEKPHGLIIQFGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +       ++    
Sbjct: 652 LKLAVALEKANVPILGTSPDAIDRAEDRERFKKLVEKLELKQPANATATSEAQALEIAER 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + ++    ++   + ++   +    +LI+ +++   E+    +
Sbjct: 712 IGYPVVVRPSYVLGGRAMEIVYNVDALKNYMEKAVKASPEHPVLIDHFLEHATEVDVDAV 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  +  +I +E++R   L    +   G
Sbjct: 772 CDGENVIVAGIMEHIEEAGIHSG---DSACSLPPKSLSAEICEEIRRQTRLLALELKVVG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F       +++ +E+N +   T     P ++   G  F ++
Sbjct: 829 LMNIQFAI--KGGEIYLIEVNPRASRT----VPFVSKATGIPFAKI 868


>gi|126656685|ref|ZP_01727899.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
 gi|126621905|gb|EAZ92613.1| D-alanyl-D-alanine ligase A [Cyanothece sp. CCY0110]
          Length = 340

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 63/290 (21%), Positives = 115/290 (39%), Gaps = 24/290 (8%)

Query: 24  SALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           ++L      V   +   +++   +     DL    +          +++ +LL IPY  +
Sbjct: 56  ASLSRQDISVAKPLSPSQAIQW-ITEQNIDLVLPQM-FCIPGMTQYRSLFDLLNIPYLGN 113

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
                AL+ +K ++K +V S GV V    L+++    +   + PP VIKP    +SLG+ 
Sbjct: 114 TAELMALTANKAKAKAIVRSMGVKVPYGELLHKGDTPN---LRPPVVIKPDNSDNSLGVT 170

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++K        L ++  +     L+ E    G E+ CG +      ++      +     
Sbjct: 171 LVKTMDECDTALEKAFEYA-DQVLVEEYIELGREVRCGTIVKEGELISLPLEEYAVNTEN 229

Query: 203 ELKYSS----------------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +                  +            + + VQ +A   HQA+GCR  S  
Sbjct: 230 NPIRNHEDKLKKDDSGELTYAAKDKKKAWIVDSNNPVTRRVQEIAKQCHQALGCRHYSLF 289

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF  DP   + ++LE  +    +P S+ P MA   G S  ELL  ++++A
Sbjct: 290 DFRIDPQ-GQPWFLEAGLYCSFSPKSVIPMMAQAKGISLNELLEIVIKEA 338


>gi|329114164|ref|ZP_08242926.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum
           DM001]
 gi|326696240|gb|EGE47919.1| Carbamoyl-phosphate synthase large chain [Acetobacter pomorum
           DM001]
          Length = 1084

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L    +    +       + D+ + ++ + + G+    S +
Sbjct: 89  TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   I  P +I+P       G  +    +     +L     +   ++L+E+
Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                      G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRAIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AG++   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   +++                 G              + +  T +  + 
Sbjct: 616 RLYFEPLTAEDVISLIRCEQQKGTVKGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P                 +  P V++P        + ++  
Sbjct: 676 RAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVVVRPSYVLGGRAMEIVYD 735

Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +   +    +    D             + IE     + D +       +   +   
Sbjct: 736 RNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIADGTDVYVAGVMEHIEEAG 795

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   I  E++       + +G  G+    +      +++F LE
Sbjct: 796 IHSG---DSACALPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAI--KDQEIFVLE 850

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873


>gi|258542083|ref|YP_003187516.1| carbamoyl phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256633161|dbj|BAH99136.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256636218|dbj|BAI02187.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256639273|dbj|BAI05235.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256642327|dbj|BAI08282.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256645382|dbj|BAI11330.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256648437|dbj|BAI14378.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256651490|dbj|BAI17424.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256654481|dbj|BAI20408.1| carbamoyl-phosphate synthase large subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 1084

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVERIILKEKPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L    +    +       + D+ + ++ + + G+    S +
Sbjct: 89  TMGGQTALNTAMALHASGFLTKHNVELIGADAEVIDRAEDRQKFRETMDAIGIESPRSFI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   I  P +I+P       G  +    +     +L     +   ++L+E+
Sbjct: 149 AHTLAEAHDALKQIGFPSIIRPSFTMGGSGGGIAYNREEFDQIVLSGLDASPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                      G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRAIGVETGGSNVQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/327 (11%), Positives = 90/327 (27%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AG++   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   +++                 G              + +  T +  + 
Sbjct: 616 RLYFEPLTAEDVISLIRCEQQKGTVKGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P                 +  P V++P        + ++  
Sbjct: 676 RAEDRERFQTMLHKLGLRQPENGIARTPEEAEAVAEKVGYPVVVRPSYVLGGRAMEIVYD 735

Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +   +    +    D             + IE     + D +       +   +   
Sbjct: 736 RNGLQRYMRDVLTMAGHDISSGPILLDRYLNEAIEADVDCIADGTDVYVAGVMEHIEEAG 795

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   I  E++       + +G  G+    +      +++F LE
Sbjct: 796 IHSG---DSACALPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAI--KDQEIFVLE 850

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873


>gi|221134942|ref|ZP_03561245.1| carbamoyl phosphate synthase large subunit [Glaciecola sp.
           HTCC2999]
          Length = 1073

 Score = 66.8 bits (161), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD+   
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKERPDVILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G  A A+   + R +   +   + +       
Sbjct: 89  TMGGQTALNCALDLNKFGVLEKYNCELIGATADAIDKAEDRERFDKAMKSIGLECPRAEI 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +++  H     I  P +I+P       G  +            +    +   +LLI++
Sbjct: 149 AHSLEEAHEVSKRIGFPCIIRPSFTMGGSGGGIAYNIDEFNEICTRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKADNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQIMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGICPNTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 91/285 (31%), Gaps = 33/285 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARALEANGVPIIGTSPDAIDRAEDRERFQHMVHKLDLKQPANATVSNMEQAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
           +    I  P V++P        + ++   + +   L ++   ++   +L+++++D  IE+
Sbjct: 702 EEAVKIGFPLVVRPSYVLGGRAMEIVYDLKDLKRYLNEAVKVSNDSPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  +I   ++         
Sbjct: 762 DIDAICDGEKVVIGGIMEHIEQAG---VHSGDSACSLPPHSLSEEIQNVMRAQVKAMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +G  G+  + F       +V+ +E+N +   T     P ++   G
Sbjct: 819 LGVVGLMNTQFAV--KDGEVYLIEVNPRAART----IPFVSKATG 857


>gi|297180937|gb|ADI17140.1| carbamoylphosphate synthase large subunit (split gene in mj)
           [uncultured gamma proteobacterium HF0070_08D07]
          Length = 1073

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                     ++V  ++A  +PD    
Sbjct: 29  SGAQACKALKEEGLRVVLVNSNPATIMTDPAMADATYIEPVNWKTVREIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +LE        +   A   + D+    + +   G+    S++
Sbjct: 89  TMGGQTALNCALDLVREGVLEEFSCRMIGASKEAIDKAEDRELFDKAMKKIGLGTPRSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 CHSLEEAIQVQKQVGFPCIIRPSFTLGGSGGGIAYNKEEFEEICGRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPSQTLTDKEYQLLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAISPDDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/323 (12%), Positives = 102/323 (31%), Gaps = 47/323 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           + A+ + GF+   +         D D   
Sbjct: 561 IMVLGGGPN-------RIGQGIEFDYCCVHASQAIREEGFESIMVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  +    +P        G              + I  T    +  A  
Sbjct: 614 RLYFEPLTLEDVLAIAEVEQPQGVIVQFGGQTPLKLARGLESFGVPIIGTSPDAIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P           + +   I  P V++P        + ++  +Q +
Sbjct: 674 RERFQKLVDGLGLRQPANRLAREIDEAVANADKIGYPIVVRPSYVLGGRAMEIVYGEQEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGI-ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L+++++D   E+   ++ D    V    +   +       +S  
Sbjct: 734 RQYMRSAVEVSNESPVLLDRFLDHALEVDVDLVSDGEKAVVGAIMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P ++  DI  ++++      + +G  G+            ++F +E+N +   T
Sbjct: 791 SACSLPPYRLSTDIQNKIRQQTIKISKELGVVGLMNVQLAV--QDGEIFLIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
                P ++   G S  ++   +
Sbjct: 849 ----IPFVSKCIGVSLAKIAARL 867


>gi|262274895|ref|ZP_06052706.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP
           101886]
 gi|262221458|gb|EEY72772.1| carbamoyl-phosphate synthase large chain [Grimontia hollisae CIP
           101886]
          Length = 1077

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +L    +    +   A   + D+ R  + + S G+      +
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +   ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYNVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFDEICRRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENVDAMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIARVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLKQPANATVTALEQAVEKARE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDESDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  DI  E++R        +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQDIQDEMRRQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAV--KDGEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|219666420|ref|YP_002456855.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219536680|gb|ACL18419.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1075

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 107/303 (35%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +   +     IL+   +      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLSSELAKAGILDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSP 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P       G  ++   + +   + +  S +   Q+L+E+
Sbjct: 149 AYTVEEAEKIAQELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S +         +  +  +       +  +   I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPM-LTISQELQERLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322

Query: 291 WMV 293
            ++
Sbjct: 323 SLL 325



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   I         D D              V  +    +P  A     G   
Sbjct: 580 ALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKERPIGAIVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T   ++  A   D+ R      +  +P           + +  +
Sbjct: 640 LNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEM 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  ++ +   +  +        +LI+++++          
Sbjct: 700 IGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLEN---AIEAEA 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  V+P     D + + +        Q +   G
Sbjct: 757 DAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       KV+ LE N +   T     P ++         L   ++
Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKICNTPMARLATELI 861


>gi|323140642|ref|ZP_08075566.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium
           sp. YIT 12067]
 gi|322414906|gb|EFY05701.1| carbamoyl-phosphate synthase, large subunit [Phascolarctobacterium
           sp. YIT 12067]
          Length = 1069

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/317 (14%), Positives = 100/317 (31%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I         DV            D  +  ++   +PD     
Sbjct: 30  GTQACRALKEEGLEVVLINSNPATIMTDVHVADRVYVEPISDEFIEKIIKRERPDSLLAT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  +    Q IL+   +    + I A     D+   K         +P    +
Sbjct: 90  LGGQVGLNMAMKLEEQGILDKYNVRLLGTQISAIKRGEDREMFKETMEKIHQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    I  P +++P       G  + + ++ +   + +   ++   Q LIE+ 
Sbjct: 150 ETIEAACDFGKEIGYPLIVRPAYTLGGTGGGIAENEEELIDIVQKGLGYSPIGQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D         +     +                 ++   +++ +
Sbjct: 210 IAGWKEIEYEVIRDAADNCITVCSMENLDPVGVHTGDSIVVAPAQTLSDKEVQL-LRQAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IDIVRELGVVGGCNVQLALDPYSENYYVIEVN--PRVSRSS--ALASKATGYPIAKVTSK 324

Query: 292 M--------VEDASCLR 300
           +        +E+A   +
Sbjct: 325 IAVGYNLDEIENAVTKK 341



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 90/291 (30%), Gaps = 30/291 (10%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G++   I           D+             V  V+   KP+       G
Sbjct: 577 CVWALKEMGYETIIINNNPETVSTDFDISDKLYFEPLTVEDVLNVIDKEKPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  +    +  A   ++            P   ++      + +
Sbjct: 637 QTAINLAGPLSRAGVKILGSSVDSIDRAEDRERFDELLTSCDIPRPQGHTVFDTEGALVA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  P +++P        + ++  D  +   +  +   +    +L++ Y+ G E+   
Sbjct: 697 AHKVGYPTMVRPSYVLGGRAMEIVYNDDELRNYMTYAVKASREHPVLVDHYLQGTEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +   + + +          +  
Sbjct: 757 AICDGKEVLIPGIMEHVERAG---VHSGDSIAVYPPRSLSESVIRTIIEYTNKMALGLEV 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G+    ++       V+ +E+N +   T     P ++   G S  ++   
Sbjct: 814 KGMINIQYIV--RDEHVYVIEVNPRSSRT----VPFLSKITGISMVDVATR 858


>gi|320355375|ref|YP_004196714.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320123877|gb|ADW19423.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 1068

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 99/299 (33%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV         ++  ++A  +PD    
Sbjct: 29  SGTQACKALRELGYRIVLVNSNPATIMTDPGMADVTYIEPLNVDTLEKIIARERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G        D     ILE   +      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSALNLSSDLARLGILEKYGVQVIGVNLEAIERGEDRIEFKKEMDRLGIEMPRSTA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P VI+P       G  ++   + +     +  + +   Q+L+E+
Sbjct: 149 VYSVEDAERIAAELGYPVVIRPAYTMGGTGGGMVYNLEELRTVATRGIAASRIGQILVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G E          D  L              +            +P     ++ + +
Sbjct: 209 CVIGWEELELEVVRDADNRLITVCFIENIDPMGVHTGDSFCAAPMLTVPV----ELQQRL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           QR A+   ++IG  G +   F  DP++ +V  +EIN +   T  S     +   G+   
Sbjct: 265 QRAAYAIVESIGVIGGTNVQFAHDPVTDRVVVIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 88/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  +    KP        G   
Sbjct: 581 ALRDMGYETVMVNCNPETVSTDYDTSDKLYFEPLTVEDVLQIYQKEKPRGVICQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T   ++  A   D            +      +     +     
Sbjct: 641 LNIARQLEEAGVTILGTPPAVIDMAEDRDLFNRMMEKLGIPMAAGGMAVNEEEAVAIAGQ 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  +  +   +  +        +LI++Y++          
Sbjct: 701 IGYPLMVRPSYVLGGRGMEIVYDEPMLRDYMAAAVDVTPDRPILIDRYLEN---AIEAEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRG 242
           DA  D T+  VP    +  +    S +S  V+P     + +   ++       + +G  G
Sbjct: 758 DAIADGTDAFVPAVMEHIEQAGIHSGDSACVIPPVGIPEHHIATIREYTRTIAREMGVVG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       +V+ LE N +   T     P ++   G     +   ++
Sbjct: 818 LMNIQYAIC--DDRVYVLEANPRASRT----VPLVSKVCGIPMARIATEIL 862


>gi|157363234|ref|YP_001470001.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae
           TMO]
 gi|167006452|sp|A8F453|CARB_THELT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|157313838|gb|ABV32937.1| carbamoyl-phosphate synthase, large subunit [Thermotoga lettingae
           TMO]
          Length = 1105

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 89/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  I         D + S            +  V+   +PD    
Sbjct: 29  SGAQAIKALKSLGYRVVVINSNSATIMTDPEFSDAVYIEPLTIDFLEAVIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + +L   ++            + D+ + K  + +CG+ V  S  
Sbjct: 89  TLGGQTALNLAVELFKKGVLCKYDVELIGVKPDTIEKAEDREQFKTAMKNCGLEVLESRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      MD       P VI+P       G  +    Q +   +      +    +LIE+
Sbjct: 149 VSSVTEAMDVVREFGYPVVIRPSFTLGGSGGGIAYNLQELKAIVENGLIESPAHTVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +F    +      +         ++        
Sbjct: 209 SVIGWKEYELEVMKDHEDNFIVVCSIENFDPMGIHTGDSVTVAPAQTLTDVEYQCMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                      G     F  D  + K+  +E+N  P ++  S     +   GY   ++
Sbjct: 269 RKALSAIGFDAGGCNIQFAVDTYTGKLVIIEMN--PRVSRSS--ALASKATGYPIAKI 322



 Score = 42.9 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 95/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++V  +           D+             +  +     PD       G   
Sbjct: 576 AFQEEGYEVIMVNSNPETVSTDYDISDKLYFEPLTTEDILEIAKIENPDGIVVSFGGQTP 635

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    E L+I   +  ++    S D+       S   VP        +  + +  L
Sbjct: 636 LRIARALEKEGLKILAANYELIDLTESRDRFAKFLKQSGLSVPPFSVARSIKEALRAAEL 695

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +I+P        + ++   + +   +  +S  +    L+I+++++       +  
Sbjct: 696 IGFPVLIRPSYVLGGRAMAIVDHKKDLLSYISNASLISPDHPLIIDKFLEN---AVELDV 752

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D   D   + +        +    S +S  VLP      D+ ++++ L +   +++   G
Sbjct: 753 DVISDGENVWIAGLMEQIEKAGIHSGDSACVLPPVSLSDDLIEKIEHLIYRLIKSLKIIG 812

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +           KV+ +E+N    +      P ++   G    ++    +
Sbjct: 813 PANIQLAV--KDDKVYVIELN----LRASRTIPFVSKAIGIPVAKIAAKTI 857


>gi|148263921|ref|YP_001230627.1| carbamoyl-phosphate synthase, large subunit [Geobacter
           uraniireducens Rf4]
 gi|146397421|gb|ABQ26054.1| carbamoyl-phosphate synthase large subunit [Geobacter
           uraniireducens Rf4]
          Length = 1082

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            + +++   +PD    
Sbjct: 29  SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADRTYIEPVTPEILAMIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V      +LE   +    + + A  ++ D+   K+ +    + V  S  
Sbjct: 89  TLGGQTALNTAVAVAESGVLEKYGVELIGAKLPAIKMAEDRTLFKEAMQRINLTVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +   M+    I  P +I+P       G  +    +      +     +   ++LIE+
Sbjct: 149 AHNHAEAMEIIKEIGFPAIIRPSFTLGGTGGGIAYNMEEYEKMSVAGIEASPTSEILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPRDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    L  +   N++             G   
Sbjct: 598 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVLNIVELEKPEGVIVQFGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +             
Sbjct: 658 LKLAVSLEKAGVPIIGTSPDAIDRAEDRERFQEMLHKLGLRQPENGTARSFEEAEKVADR 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  I  +I  E++R   +    +  RG
Sbjct: 778 CDGTEAVIGGIMEHIEEAGIHSG---DSACSLPPYSISREIADEIRRQTKMMALELNVRG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +        ++ LE+N +   T     P ++   G    +L   +
Sbjct: 835 LMNVQYAI--KDDVIYILEVNPRASRTA----PFVSKATGRPLAKLAARI 878


>gi|284006380|emb|CBA71616.1| carbamoyl-phosphate synthase large chain [Arsenophonus nasoniae]
          Length = 1074

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPIQWEVVRKIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +   + +L    +    +   A   + D+ R  + +   G+    S +
Sbjct: 89  TMGGQTALNCALELERKGVLNEFAVTMIGATADAIDKAEDRQRFDKAMKKIGLETARSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +    +      L     +  ++LLI++
Sbjct: 149 AHSLEEALEVVEKVGFPCIIRPSFTMGGSGGGIAYNREEFEDICLTGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICSIENVDAMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 MAVLREIGVETGGSNVQFAVNPKTGRLIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AVGYTLDELMNDI 339



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P+       G   
Sbjct: 588 ALREDGYQTIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEQPEGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T    +  A   ++ +          P   ++      ++  H 
Sbjct: 648 LKLALALEEAGVPIIGTSPDAIDRAEDRERFQQAVARLGLKQPENATVTTIEQAIEKAHS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L++ ++D  IE+    +
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDHFLDDAIEVDVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +  +I   ++         +  RG
Sbjct: 768 CDGETVLIGGIMEHIEQAG---VHSGDSACSLPPYTLSQNIQNVMREQVKKLAFELRVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G +  ++   
Sbjct: 825 LVNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGIALAKVAAR 867


>gi|291279606|ref|YP_003496441.1| carbamoylphosphate synthase large subunit [Deferribacter
           desulfuricans SSM1]
 gi|290754308|dbj|BAI80685.1| carbamoylphosphate synthase, large subunit [Deferribacter
           desulfuricans SSM1]
          Length = 1075

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGSQAVKALKEEGYRVVLVNSNPATIMTDPEFADATYIEPLTVEIVEKIIKKEQPDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D     +LE   +    + I A   + D+   K+ ++  G+ +     
Sbjct: 89  TVGGQTALNLAIDLHKARVLEKYNVELIGAKIDAIQKAEDRELFKKAMAKIGLDMPKSAY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M     I  P +I+P       G  V    +     ++     +  +++L+E+
Sbjct: 149 VNSYDEAMKVIKDIGFPAIIRPSFTLGGTGGNVAYNMEEYREYVIWGLEASPVNEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +   +      +        
Sbjct: 209 SIIGWKEIELEVMRDLKDNVVIICGIENFDPMGVHTGDSITVAPIQTLTDKEYQYLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVIREIGVDTGGSNVQFAVDPKTGRQVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 101/286 (35%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL + G++   +         D D S  L    L  +   N++        +VQ      
Sbjct: 587 ALREVGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEHVMNIIEKENPYGVIVQFGGQTP 646

Query: 72  ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
                 LE   +    +   +  ++ D+ R ++++    +    +         ++    
Sbjct: 647 LKLAVPLEKAGVNILGTSPDSIDIAEDRERFQKLLKDINLKQPDNGIAKNFEEALNIAEN 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++    S+   +  +   +    +LI+++++  IE+    +
Sbjct: 707 IGYPVVVRPSYVLGGRAMEIVYDQDSLKNYMKYAVEASEEHPVLIDKFLENAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           ++  + P  +  +I +E++R      + +  +G
Sbjct: 767 SDGESTIVAGIMQHIEEAGIHSG---DSACSIPPRSLSDEIIEEIKRATISLAEKLNVKG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    +       +++ LE+N +   T     P ++   G S  +L
Sbjct: 824 LMNVQYAI--KDNQLYVLEVNPRASRT----VPYVSKSIGKSLAKL 863


>gi|212702278|ref|ZP_03310406.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098]
 gi|212674271|gb|EEB34754.1| hypothetical protein DESPIG_00289 [Desulfovibrio piger ATCC 29098]
          Length = 1105

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D              +++  ++   +PD    
Sbjct: 54  SGSQAVKALKEEGYEVVLVNSNPATIMTDPHMADATYIEPIEQQTLAAIIRKERPDALLP 113

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +L    +    +       +  +   +Q + + G+ V  S +
Sbjct: 114 TLGGQTALNAALGLAKSGVLAECGVELIGARAEVIEKAESRELFRQAMENIGLKVPASGI 173

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          ++  P +I+P       G  +      +        S +   +++IEQ
Sbjct: 174 AHNMDEVRALGDVLPFPLIIRPAFTLGGTGGGIAYNMADLEEVAGHGLSASPVSEVMIEQ 233

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +  +  +      +          +        
Sbjct: 234 SVLGWKEFEMEVMRDKNDNCVIVCSIENVDAMGVHTGDSITVAPAQTLTDAEYQMMRDAS 293

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   +L  
Sbjct: 294 FAIMREIGVETGGSNVQFGINPDNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKLAA 349

Query: 291 WM 292
            +
Sbjct: 350 KL 351



 Score = 43.3 bits (100), Expect = 0.042,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 84/261 (32%), Gaps = 13/261 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+       G    +  V  +   + I  T    + 
Sbjct: 643 DRLYFEPLTF---EDVMNIVEKEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 699

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   + +     ++    I+ P V++P        + V+  
Sbjct: 700 RAEDRERFQALIEKLGLLQPPNGTAMDLDQALEVAERITYPVVVRPSYVLGGRAMAVVYD 759

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +     +         +LI+++++       V  DA  D  E+ V     +  E   
Sbjct: 760 KEELVDYFREQVPEKPEHPILIDKFLE---HAVEVDVDALSDGKEVYVAGIMEHIEEAGI 816

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP+     D    +   A    + +   G+    F        ++ LE+N +
Sbjct: 817 HSGDSACVLPSFSLSYDHVALIAAQAEALARELKVVGLMNIQFAI--KGDDLYILEVNPR 874

Query: 266 PGMTPVSIFPEMAAYAGYSFR 286
              T     P ++   G    
Sbjct: 875 ASRTA----PFVSKATGVPLP 891


>gi|89893144|ref|YP_516631.1| carbamoyl phosphate synthase large subunit [Desulfitobacterium
           hafniense Y51]
 gi|89332592|dbj|BAE82187.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1075

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 107/303 (35%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKALKNLGYEVVLVNSNPATIMTDAGTADATYIEPLNVQRITEIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +   +     +L+   +      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLSSELAKAGVLDHYGVKVIGVQLDAIERGEDRIAFKETMERLGIDMPKSSP 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P       G  ++   + +   + +  S +   Q+L+E+
Sbjct: 149 AYTVEEAEKIAQELGYPVVIRPAYTLGGTGGGLVYNVEELKTIVNRGISASMIGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S +         +  +  +       +  +   I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDSKNQMITVCFIENIDAIGVHTGDSFCSAPM-LTISQELQERLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYSIVEAIEVIGGTNVQFAHDPKTDRVVIIEINPR---TSRSS-ALASKATGFPIA-LIS 322

Query: 291 WMV 293
            ++
Sbjct: 323 SLL 325



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   I         D D              V  +    +P  A     G   
Sbjct: 580 ALKNLGYETIMINCNPETVSTDYDTSDKLYFEPLTVEDVLSIYEKERPIGAIVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T   ++  A   D+ R      +  +P           + +  +
Sbjct: 640 LNIAAQLQEAGVRILGTVPEVIDQAEDRDQFRKMMEKLAIPMPQAGMASTLEEALAAAEM 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++  ++ +   +  +        +LI+++++          
Sbjct: 700 IGYPVMVRPSYVLGGRGMEIVFDEEQLREYVAAAVDITPERPILIDKFLEN---AIEAEA 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  V+P     D + + +        Q +   G
Sbjct: 757 DAVSDGTHAFVPAVMEHIELAGIHSGDSACVIPPLTIADRHLRTIIDYTQRIAQELHVVG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       KV+ LE N +   T     P ++         L   ++
Sbjct: 817 LMNIQYAIAE--DKVYVLEANPRASRT----VPLVSKICNTPMARLATELI 861


>gi|113969310|ref|YP_733103.1| carbamoyl phosphate synthase large subunit [Shewanella sp. MR-4]
 gi|114046510|ref|YP_737060.1| carbamoyl phosphate synthase large subunit [Shewanella sp. MR-7]
 gi|113883994|gb|ABI38046.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. MR-4]
 gi|113887952|gb|ABI42003.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. MR-7]
          Length = 1074

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       L+  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHSMEEAYGVLDLVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +   I  E++         +G  G
Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVRKLAMELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|117919417|ref|YP_868609.1| carbamoyl phosphate synthase large subunit [Shewanella sp. ANA-3]
 gi|117611749|gb|ABK47203.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. ANA-3]
          Length = 1074

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       L+  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHSMEEAYGVLDLVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +   I  E++         +G  G
Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVRKLAMELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KNNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|309389735|gb|ADO77615.1| carbamoyl-phosphate synthase large subunit [Halanaerobium
           praevalens DSM 2228]
          Length = 1071

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                      S+  +L    PD    
Sbjct: 29  SGSQACRALKEEGLEVVLVNSNPATIMTDENMADRVYIEPLTVASIIEILKQENPDGIIP 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +      +      E+  T    +  A   +  +         +    +
Sbjct: 89  TLGGQIALNLAIDLAKTNILKELNIELLGTPIETIKRAEDRNTFKELMNEIGEPILASKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  V    + +     +    +   Q+LIE+
Sbjct: 149 AENIEEAAAIAADIGYPVIVRPAYTMGGTGGGVANNLEELKEITARGFKHSLIGQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +    Y+  +  
Sbjct: 209 SIKGW-KEIEYEVMRDANNNCIVVCNMENFDPVGVHTGDSIVVAPSQTLTDKEYQMFRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     +  DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALGIEGGCNVQYALDPESFQYYIIEVN--PRVSRSS--ALASKATGYPIAKVSA 323

Query: 291 WM 292
            +
Sbjct: 324 RI 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 21  ACASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           +  SA  L  AG++   ++                         +  ++ + KP+     
Sbjct: 578 SVHSAWTLNQAGYESIIVNNNPETVSTDFDTADRLYFEPLTKEDLMQIIENEKPEGVICQ 637

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
             G    +         + I  T    +  A   D+           VP           
Sbjct: 638 FGGQTAVNLAEPLAEAGVNILGTSVDSIDLAEDRDRFIGLLNKLKIPVPAGKVAANLNEA 697

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I+ P +++P        + V+  +Q +   +  +   +    +L+++Y+ G E+
Sbjct: 698 EKIAAEIAYPVLVRPSYVLGGRAMEVVYNEQELADYMKNAVKVSPDRPVLVDKYLTGTEI 757

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +     P ++  ++  +  +      +A
Sbjct: 758 EIDAVSDGETVIVPGIMEHVERAG---VHSGDSIAVYPPHRLGEELKAKAVKYTEKIARA 814

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  +G+    ++    + ++F +E+N +   T     P ++   G    +L   
Sbjct: 815 LKIKGVINIQYVV--SNGEIFVIEVNPRSSRT----IPYLSKVTGVPMVDLATK 862


>gi|253997072|ref|YP_003049136.1| carbamoyl-phosphate synthase large subunit [Methylotenera mobilis
           JLW8]
 gi|253983751|gb|ACT48609.1| carbamoyl-phosphate synthase, large subunit [Methylotenera mobilis
           JLW8]
          Length = 1067

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKFNVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFITICERGLDASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/265 (11%), Positives = 81/265 (30%), Gaps = 11/265 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  KP        G              + I  T    + 
Sbjct: 608 DRLYFEPVTL---EDVLEIVALEKPVGVIVQYGGQTPLKLARDLEKAGVPIIGTTPDAID 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +       +     I  P V++P        + ++++
Sbjct: 665 MAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLATEIGYPLVVRPSYVLGGRAMEIVQE 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   + ++   ++   +L++++++              +V    + +    +     
Sbjct: 725 QSQLERYMREAVKVSNESPVLLDRFLNDALEVDVDALSDGEEVIIGGIMEHVEQAGVHSG 784

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            S  S    P  +   +  E++       +A+G  G+    F        V+ LE+N + 
Sbjct: 785 DSACSLP--PYSLSAALQDELRVQTKQMAKALGVVGLMNVQFAI--QGETVYVLEVNPRA 840

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P ++   G    ++   
Sbjct: 841 SRT----VPFVSKACGLQLAKVAAR 861


>gi|124008778|ref|ZP_01693467.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina
           ATCC 23134]
 gi|123985691|gb|EAY25571.1| carbamoyl-phosphate synthase, large subunit [Microscilla marina
           ATCC 23134]
          Length = 963

 Score = 66.4 bits (160), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +V+ I         D              +S+  +L     D    
Sbjct: 29  SGSQAARSLKEEGIEVTLINSNPATIMTDPSIADHIYLKPLNKKSIIEILEAHDIDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            + G    +  +        E   +      I A   + D+ R +  +      V    +
Sbjct: 89  TMGGQTALNLCIDCQKAGVWEKFNVEIIGVDINAVETTEDRERFRLRMHELGANVCKGKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P VI+P       G   +  ++     L +  + +   ++LIEQ
Sbjct: 149 ATSFLKGKEIAQDVGFPLVIRPSYTLGGYGGGFVHSEEEFNKALTRGLTASPIHEVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S     I     +     +      +                   
Sbjct: 209 SILGWKEFELELLRDSAGNVIIICSIENVDPMGIHTGDSITVAPAMTLSDKHYQAMRNLA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
               +      G     F  +P +  +  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IKTMNGIGQFAGGCNIQFAVNPENDDIIVIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 89/290 (30%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI-----------DVDRSVG----------LVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I           D+   +            ++ H KP+     L G   
Sbjct: 602 AVKEAGYEAIMINCNPETVSTDFDIADKLYFEPVFWEHIYDIILHEKPEGVIVQLGGQTA 661

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    L  A       +    +    P   S+      ++    
Sbjct: 662 LKLAEKLDRYNIPIIGTSYKALDLAEDRGSFSTLLKENDIPYPEFGSVSTTEGALELSKK 721

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +  P +++P        + ++  +Q +   ++   ++   +Q+L++ ++D  IE     +
Sbjct: 722 LDFPLLVRPSYVLGGNKMKIVINEQELEEHVVDVLNYFPDNQILLDHFLDQAIEAEADAI 781

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           +   + P  +   + +++ +       A+   G
Sbjct: 782 CDGENVYIIGIMEHIEPAGIHSG---DSHAVLPPFSLSPLLMEKIAQYTKKIALALDTVG 838

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F        V+ +E N +   T     P +       +      +
Sbjct: 839 LINIQFAI--KGNDVYVIEANPRASRT----VPFICKAYKTPYINYATKI 882


>gi|304315132|ref|YP_003850279.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
 gi|302588591|gb|ADL58966.1| carbamoyl-phosphate synthase, large subunit [Methanothermobacter
           marburgensis str. Marburg]
          Length = 1059

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 95/300 (31%), Gaps = 30/300 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L + G +   ++ + +                     V  ++   KPD    
Sbjct: 29  SGSQACKSLREEGIETVLVNSNPATIQTDMEMADRVYVEPLTPEIVAKIIEKEKPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          LE + +  +    + +    D   S     +  VP   ++ 
Sbjct: 89  TMGGQTGLNVATGLAEIGALEGVRVIGSSIETIRNVEDRDLFDSFMKRLNEPVPAARAVN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +++P       G  V      +     +    +  +Q+LI+Q V
Sbjct: 149 SVEEALEAVDEIGYPVIVRPAFTLGGTGGGVAHNRDELIEIATRGLEMSFINQVLIDQSV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +           + T I V   +       ++  +        +  +  + ++  A 
Sbjct: 209 LGWKEF-EYEVMRDRNDTCIIVCNMENIDPMGIHTGESVVVAPAQTLSDEDNQRLRDAAI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+   G     F   P + +   +E+N  P ++  S     +   GY   ++   +
Sbjct: 268 KIIRALRIEGGCNIQFAVHPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKIAAKI 323


>gi|160900363|ref|YP_001565945.1| carbamoyl-phosphate synthase large subunit [Delftia acidovorans
           SPH-1]
 gi|160365947|gb|ABX37560.1| carbamoyl-phosphate synthase, large subunit [Delftia acidovorans
           SPH-1]
          Length = 1052

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%)

Query: 21  ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59
               AL + G+KV  I              DV        ++V  ++A  +PD     + 
Sbjct: 2   QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61

Query: 60  GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113
           G        D     +L   ++    +   A   + D+++ K  ++  G+    S     
Sbjct: 62  GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  Q  +  P VI+P       G  +    +       +    +  ++LLIE+ + 
Sbjct: 122 MDEAWAVQKEMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G +     +     D   I     +     +      +          +          +
Sbjct: 182 GWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+A  KP       
Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPVGVIVQY 613

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ +          P   +       +
Sbjct: 614 GGQTPLKLALGLEKEGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 673

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++ ++    + 
Sbjct: 674 EKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDHFLSN-AIE 732

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +         +       +S  ++  + P  +  +   E++R       A+
Sbjct: 733 CDVDCVRDREGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKPETVAEIKRQTAAMANAL 792

Query: 239 GCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F          ++ LE+N +   T     P ++   G    ++   
Sbjct: 793 SVVGLMNVQFAIKETADGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 843


>gi|291521241|emb|CBK79534.1| carbamoyl-phosphate synthase large subunit [Coprococcus catus GD/7]
          Length = 1074

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 100/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCAELNKAGILDKYHVKVIGVQVDAIERGEDRIEFKHAMDKLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADKLDYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +     +         +       ++  +        I  +  K +Q  
Sbjct: 209 SILGWEELELEVVRDKDNNMITVCFIENIDP-LGVHTGDSFCAAPMLTISEECQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP++ ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVESVEVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 94/298 (31%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T   ++  A   D  R+        +P           ++  + 
Sbjct: 641 LNLAAELEKNGVKILGTAPAVIDLAEDRDLFRAMMEKLDIPMPESGMATTVDEALEIANK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMAGYMAAAVGVTPDRPILIDRFLN---HATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  +LP   I  +    ++       + +  RG
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACILPSVHISPENVATIKEYTRKIAEEMHVRG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         L   ++      R
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDIITSELTGR 869


>gi|257869385|ref|ZP_05649038.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2]
 gi|257803549|gb|EEV32371.1| carbamoyl-phosphate synthase [Enterococcus gallinarum EG2]
          Length = 1060

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELANSGILDEMEIELLGTKLAAIDQAEDRDLFKQLMEELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ + +        +   Q LIE+ 
Sbjct: 150 STVEEAVTFATKIGYPIIVRPAFTLGGTGGGMCNNEEELRVIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   + I  T    L  A + D         +   P   +       +   +
Sbjct: 639 AINLAEPLVAAGVSILGTSIEDLDRAENRDLFEQALQALAIPQPPGDTATNTTEAVAIAN 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++    +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQADLEDYMKHAVKASPEHPVLVDRYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P  +       ++         + C G
Sbjct: 759 CDGTTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSEATIATIEDYTKRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++    +
Sbjct: 816 MMNIQFVIHEE--KVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 860


>gi|159027682|emb|CAO89547.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 1081

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMADRTYIEPILPEIVEKIIEKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+   K+ +   GVPVCPS +
Sbjct: 89  TMGGQTALNTAVALAKSGVLEKYNVELIGAKLPAIEKAEDRELFKKAMEKIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N               P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLEEAKAIGHQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEPMAQYGLDCSPTSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F +  +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SKAIIREIGVETGGSNIQFSVNPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 25/258 (9%), Positives = 73/258 (28%), Gaps = 15/258 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++   +P+       G       V     L       +  +          ++ 
Sbjct: 622 KEDVLNIIEAEQPEGLIIQFGGQTPLKLAVPLQKYLESPNCPVNTKIWGTSPDSIDTAED 681

Query: 99  VVSSCGVPVCPSILV--------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
                 +     I           + +      I  P V++P        + ++  D  +
Sbjct: 682 RERFEQILRQLDIRQPANGIARSFQESQAVAKRIGYPVVVRPSYVLGGRAMEIVYSDSEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++   +   V   +    T +     +       +S  +
Sbjct: 742 ERYMKYAVQIEPDHPILIDKFLEN-AIEVDVDALSDATETVVIGGLMEHIEQAGVHSGDS 800

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  +    +   +   +++      +A+   G+    +        V+ LE N +   T 
Sbjct: 801 ACSIPHTSLSASVLTTIRQWTVELAKALKVIGLMNIQYAV--QGETVYILEANPRASRT- 857

Query: 271 VSIFPEMAAYAGYSFREL 288
               P ++   G    ++
Sbjct: 858 ---VPYVSKATGVPLAKV 872


>gi|52080154|ref|YP_078945.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|52785531|ref|YP_091360.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|319646067|ref|ZP_08000297.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2]
 gi|52003365|gb|AAU23307.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus
           licheniformis ATCC 14580]
 gi|52348033|gb|AAU40667.1| PyrAB [Bacillus licheniformis ATCC 14580]
 gi|317391817|gb|EFV72614.1| carbamoyl-phosphate synthetase [Bacillus sp. BT1B_CT2]
          Length = 1070

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTLEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  RS     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSEHGILAECGVEVLGTKLSAIQKAEDRDLFRSLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLGEAREFVERIGFPVIVRPAYTLGGTGGGICSNEDELKEIVENGLKMSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSSDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    L  A   DK      +     P+  +       ++    
Sbjct: 640 INLADELAERGVAILGTSLEDLDRAEDRDKFEQTLEMLQVPQPLGKTATSVEGAVEIAAN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEAELLHYMENAVKINPQHPVLIDKYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K+++       + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKLEAYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVL--SKDEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|254482510|ref|ZP_05095749.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2148]
 gi|214037201|gb|EEB77869.1| carbamoyl-phosphate synthase, large subunit [marine gamma
           proteobacterium HTCC2148]
          Length = 1073

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              R+V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPIEWRTVARIIEEEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +   A  ++ D+    + +   G+    +  
Sbjct: 89  TMGGQTALNCALDLARHGVLAEHGVEMIGATKEAIDMAEDRQLFDKAMKRIGLDTPRASL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +           ++    +  ++LLI++
Sbjct: 149 AHTMEEAFQVLDSIGFPCIIRPSFTMGGSGGGIAYNRDEFEEICMRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRLVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 89/266 (33%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  KP        G              + I  T    + 
Sbjct: 613 DRLYFEPVTL---EDVLEIVALEKPKGVIVQFGGQTPLKLARALEDAGVPIIGTTPDAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   ++      +++   I  P V++P        + ++ +
Sbjct: 670 RAEDRERFQHMIQKLGLKQPANTTVRSTEEAVEAAASIGYPLVVRPSYVLGGRAMEIVYR 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   +  +   +    +L++ ++   IE+    + D    V    +   +       
Sbjct: 730 EEDLLRYMKHAVQASDDAPVLLDSFLSAAIEIDIDAVSDGEEVVIGAIMQHIEQAG---V 786

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  + + +  +++         +G RG+      +     +++ +E+N +
Sbjct: 787 HSGDSACSLPPYSLDMVVQDQMREQVKQMALELGVRGLMNVQLAW--QDDEIYVIEVNPR 844

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G S  ++   
Sbjct: 845 ASRT----VPFVSKCIGRSLAQVAAR 866


>gi|121604677|ref|YP_982006.1| carbamoyl-phosphate synthase large subunit [Polaromonas
           naphthalenivorans CJ2]
 gi|120593646|gb|ABM37085.1| carbamoyl-phosphate synthase large subunit [Polaromonas
           naphthalenivorans CJ2]
          Length = 1080

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWRHGVLEKYSVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHTMDEAWSVQKTLGFPTVIRPSFTLGGTGGGIAYNPEEFEEICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/323 (11%), Positives = 101/323 (31%), Gaps = 44/323 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A A+ + G++   +         D D   
Sbjct: 559 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 611

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G       +      + I  T   ++ +A  
Sbjct: 612 RLYFEPLTLEDVLEIVDKEKPFGVIVQYGGQTPLKLALDLEANGVPIIGTSPDMIDAAED 671

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       ++    +  P V++P        + ++ + + +
Sbjct: 672 RERFQKLLHALELRQPPNATARTEPEALEKAAALGYPLVVRPSYVLGGRAMEIVHEQRDL 731

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++   +H   +L++++++   + C V      +         +       +S  +
Sbjct: 732 ERYMREAVKVSHDSPVLLDRFLN-DAIECDVDCIRDAEGKTFIGGVMEHIEQAGVHSGDS 790

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR--KVFWLEINVQPGM 268
           +  + P  +      E++R      +A+   G+    F    +     ++ LE+N +   
Sbjct: 791 ACSLPPYSLSAATVTEIKRQTAAMAEALNVVGLMNVQFAIQNIDGLDVIYVLEVNPRASR 850

Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291
           T     P ++   G    ++   
Sbjct: 851 T----VPFVSKATGIQLAKVAAR 869


>gi|89900791|ref|YP_523262.1| carbamoyl-phosphate synthase large subunit [Rhodoferax
           ferrireducens T118]
 gi|89345528|gb|ABD69731.1| carbamoyl-phosphate synthase large subunit [Rhodoferax
           ferrireducens T118]
          Length = 1098

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGFKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWHHGVLEKYNVELIGAKPEAIDKAEDRLKFKDAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +   +   +    +  ++LLIE+
Sbjct: 149 AHSMEEAWGVQKTVGFPTVIRPSFTLGGTGGGIAYNSEEFEVICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDQADNCIIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPEDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 592 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPYGVIVQY 651

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 652 GGQTPLKLALALEANGVPIIGTSPDMIDAAEDRERFQKLLHQLGLRQPANATARTEPEAL 711

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   +H   +L++++++   + 
Sbjct: 712 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLN-DAIE 770

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  +   E++R      +A+
Sbjct: 771 CDVDCVRDAQGQTFIGGVMEHIEQAGVHSGDSACSLPPYSLCAETVTEIRRQTAAMAEAL 830

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F    L     +F LE+N +   T     P ++   G    ++   
Sbjct: 831 NVVGLMNVQFAIQTLEGADVIFVLEVNPRASRT----VPFVSKATGVQLAKVAAR 881


>gi|326204298|ref|ZP_08194157.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325985573|gb|EGD46410.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 1070

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 89/252 (35%), Gaps = 8/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   KP        G    +       E + I  T    +  A   DK        
Sbjct: 622 VLDIIEKEKPLGVIVQFGGQTAINLAETLHQEGVNILGTSVHSIDVAEDRDKFLKLLESL 681

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              +P   +    + + +  + I  P +++P        + ++  D+++   +  +S  +
Sbjct: 682 DIPIPEGNTAFSFQHSKEIANKIGYPVLVRPSYVLGGRAMEIVYNDKTLEEYITMASEIS 741

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +LI++YV G E+    + D +  +    +   +       +S  +     P  +  
Sbjct: 742 SEHPILIDKYVVGKEMEVDGICDENEVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSQ 798

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
            +   ++       +A+  +G+    F+ D  + KV+ +E+N +   T     P M+   
Sbjct: 799 KVKDTIEDYTIRLAKAMKVKGLFNIQFVMD-SNEKVYVIEVNPRASRT----VPIMSKIT 853

Query: 282 GYSFRELLLWMV 293
           G     +   ++
Sbjct: 854 GIPMVGVATKLI 865



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +V  I+ +                       V  ++   KPD    
Sbjct: 29  SGTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKIIYKEKPDGILA 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +  +         V     
Sbjct: 89  SLGGQTGLNMAVELAEDGIIDELNIELLGTSLSSIKKAEDRELFKETMQEIDEKVAPSKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +I+P       G  +    +       +    +   Q+L+EQ
Sbjct: 149 VTTMQDAIDFAEEIGFPIIIRPAYTLGGSGGGIANTMEEFKYICGKGLKLSMISQVLLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G             +   I +   + +     ++  +        +    Y+ ++  
Sbjct: 209 SVAGW-KEIEYEVMRDSNDNCIIICNMENFDPVGVHTGDSIVVAPSQTLSDVEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+  +G     F  +P S +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 SIKIIRALDIKGGCNIQFALNPDSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVTA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|291540328|emb|CBL13439.1| urea carboxylase [Roseburia intestinalis XB6B4]
          Length = 1193

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +             +      +++       
Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA     ++ +++   A    +   
Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D  +   ++LE+N +     G+T            G    +L+ WMV++
Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|291537094|emb|CBL10206.1| urea carboxylase [Roseburia intestinalis M50/1]
          Length = 1193

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +             +      +++       
Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA     ++ +++   A    +   
Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D  +   ++LE+N +     G+T            G    +L+ WMV++
Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|240144639|ref|ZP_04743240.1| urea carboxylase [Roseburia intestinalis L1-82]
 gi|257203356|gb|EEV01641.1| urea carboxylase [Roseburia intestinalis L1-82]
          Length = 1193

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 58/182 (31%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +             +      +++       
Sbjct: 147 AEKIGYPVILKSTAGGGGIGMRICNSTEELRQAYDAVCHLAAANFNDAGVFLEKYVTRSR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA     ++ +++   A    +   
Sbjct: 207 HVEVQIFGNEYGETTALAERDCSVQRRNQKVVEESPAPNLSDEVREKMYAAAERLAKEAS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D  +   ++LE+N +     G+T            G    +L+ WMV++
Sbjct: 267 YRSAGTVEFLYDDQTEGFYFLEVNTRLQVEHGITE--------EVLGI---DLVEWMVKE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|34499257|ref|NP_903472.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum
           ATCC 12472]
 gi|34105108|gb|AAQ61464.1| carbamoyl-phosphate synthase large chain [Chromobacterium violaceum
           ATCC 12472]
          Length = 1069

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWPVVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ R K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYKVELIGATEDAIDKAEDRGRFKEAMAKIGLSCPLSFV 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  +    +       +    +   +LLIEQ
Sbjct: 149 CHTMEESLEAQAKVGFPTLIRPSFTMGGSGGGIAYNKEEFLAICERGFEASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFATNPATGEMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 96/299 (32%), Gaps = 38/299 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------ 58
             +AL   ++GF+   +         D D S  L    L  +    +             
Sbjct: 577 VHAALSLRESGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEICRVEKPFGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T   ++ +A   ++ +          P   +       M
Sbjct: 637 GGQTPLKLARALEANGVPIIGTTPDMIDAAEDRERFQKLLNELGLKQPPNRTARAPAEAM 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ +   +   + ++   ++   +L++++  D IE+
Sbjct: 697 KLADEIGYPLVVRPSYVLGGRAMEIVHEPADLERYMREAVKVSNDSPVLLDRFLNDAIEV 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +   +  E++R      +A
Sbjct: 757 DVDCVSDGEQVVIGGIMQHVEQAG---VHSGDSACSLPPYSLFPALQDEIRRQTEAMARA 813

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE---MAAY-AGYSFRE 287
           +   G+    F        ++ LE+N       P ++ V+  P     A   AG S  E
Sbjct: 814 LNVVGLMNVQFAI--QGDTIYVLEVNPRASRTVPFVSKVTSAPLAKIAARAMAGISLAE 870


>gi|297379935|gb|ADI34822.1| D-alanine--D-alanine ligase [Helicobacter pylori v225d]
          Length = 296

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 52/228 (22%), Positives = 96/228 (42%), Gaps = 10/228 (4%)

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           L  N++HG  GEDG + ++LE   I +    I AS LS +K  +K      GV     +L
Sbjct: 39  LVINLVHGGDGEDGKLASLLEFYRIAFIGPRIEASVLSYNKYLTKLYAKDLGVKALDHVL 98

Query: 113 VNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +N     +       + P++IKP   GSSLG+ V+K+++ +   L  +    +  ++LIE
Sbjct: 99  LNEKNRANALNLIGFNFPFIIKPSNAGSSLGVSVVKEEKELIYALDGAF--EYSKEVLIE 156

Query: 170 QYVDGIELT--CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
            ++ G++     G         + +  P    +    +     S +  P       + ++
Sbjct: 157 PFIQGVKEYNLAGCKIKKDFCFSYVEEPNKQEFLDFKQKYLDFSRNKAPKANLSNALEEQ 216

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           ++      +  +    + R DF       +V+  EIN  PG     +F
Sbjct: 217 LKENFKKLYNDLFDGALIRCDFFVIE--NEVYLNEINPIPGSLANYLF 262


>gi|74317146|ref|YP_314886.1| carbamoyl-phosphate synthase large subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74056641|gb|AAZ97081.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Thiobacillus denitrificans ATCC 25259]
          Length = 1068

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D D +            V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPDMADVTYIEPISWQIVEKIIAKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYGVEMIGASKDAIDKAEDREKFKAAMTKLGLGSARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  +  P +I+P       G  +            +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQAALGFPTIIRPSFTMGGSGGGIAYNKDEFVAICERGLEASPTHELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 582 ALRENGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVRIEKPFGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 642 LKLARDLERNGVPIIGTSPDMIDAAEDRERFQQMLHDLGLKQPPNRTARDPESALRMAAE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + +++++  +   + ++   ++   +L++++  D IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVREEADLVRYMTEAVKVSNKSPVLLDRFLNDAIEVDVDAL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGEQVVIGGIMQHIEQAG---VHSGDSACSLPPYSLADALQDELRRQTVAMAKALKVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAI--QGDTVYVLEVNPRASRT----VPYVSKAIGAPLAKIAAR 861


>gi|242279639|ref|YP_002991768.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           salexigens DSM 2638]
 gi|242122533|gb|ACS80229.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           salexigens DSM 2638]
          Length = 1077

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQALKALKEEGYEVILVNSNPATIMTDPVLADRTYIEPIEPGTIAKIIEKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G         V  +  L +      G     +   + R     +   +    P    
Sbjct: 89  TLGGQTALNTALAVAEMGVLDKFGVELIGASVDVIEKAESRELFRAAMEKIGLKVPTSRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        IS P +I+P       G  V    + +    +Q  S +  +++++E+
Sbjct: 149 ARNIDDVRRCGKEISFPIIIRPAFTLGGTGGGVAYNMEDLEDIAMQGISASLQNEVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++        
Sbjct: 209 SILGWKEYELEVMRDRKDNCVIICSIENIDPMGVHTGDSITVAPAQTLTDVEYQMLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAINPENGELAIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/253 (11%), Positives = 84/253 (33%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KP+       G    +  +  +   + I  T    +  A   ++ ++   
Sbjct: 628 EDVLNIIEFEKPEGVIVQFGGQTPLNLAIPLLKAGVNILGTSPDAIDRAEDRERFQALLK 687

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   + +           +  P V++P       G+ ++  D+       +++ 
Sbjct: 688 KLDLKQPPNGTAMSLEDAKAIAERLDYPLVLRPSYVLGGRGMDIVYSDEEFDSYFREAAV 747

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    +LI+++++  +E+    + D         +   +           ++  + P  
Sbjct: 748 VSPEHPILIDKFLENAVEVDVDALADGEQTYVAGVMEHIEEAGIHSG---DSACVLPPHT 804

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  +I KE++R      + +   G+    F        ++ +E+N +   T     P ++
Sbjct: 805 LSDEIVKEIERQTVALAEELEVVGLMNIQFAV--KDGDIYIIEVNPRASRT----VPFVS 858

Query: 279 AYAGYSFRELLLW 291
              G    ++   
Sbjct: 859 KATGIQLAKMATK 871


>gi|210634645|ref|ZP_03298197.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279]
 gi|210158717|gb|EEA89688.1| hypothetical protein COLSTE_02120 [Collinsella stercoris DSM 13279]
          Length = 1091

 Score = 66.4 bits (160), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 93/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  ++ +                       +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITAEFIERVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  V+     +LE   +      + A     D+             V     
Sbjct: 89  TLGGQTGLNAAVELARAGVLETYGVEMIGCDLDAIERGEDRKLFNEAMAEIGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++       P V++P       G  +   +  +   + Q    +   ++L+E+
Sbjct: 149 AYSVEDALNIVETTGYPCVLRPSFTMGGAGGGIAHDEAELIEIVTQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +     +      +         L+  +     
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRVAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/273 (10%), Positives = 79/273 (28%), Gaps = 13/273 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   +P      L G    +         + I  T    + 
Sbjct: 627 DRLYFEPVTY---EDVMDIVDAERPAGVITTLGGQTPVNLTRALAESGVTIMGTQPDAID 683

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P                 I  P +++P       G+++   
Sbjct: 684 FAEDRERFSALLDRLGVMYPPAGMATSFEEAEAVAARIGYPLLVRPSYVLGGRGMMIAYD 743

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   + +++  +    + ++++++G        + D         +   +       
Sbjct: 744 AEHLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGEEVYIGGILEHIEEAGIHSG 803

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++T + P      +   ++        A+G RG+    +        ++ +E N +
Sbjct: 804 ---DSATCIPPFSFSDSLMARLRETTRKIALALGVRGLVNVQYAI--KGETIYVIEANPR 858

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
              T     P ++   G         ++  AS 
Sbjct: 859 ASRT----VPFISKATGVPLARCAARIMAGASI 887


>gi|310779987|ref|YP_003968319.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
 gi|309749310|gb|ADO83971.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
          Length = 1069

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 96/291 (32%), Gaps = 32/291 (10%)

Query: 23  ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61
             AL+  G +   I+                     +   V  ++   +P+       G 
Sbjct: 580 IKALQKMGIETIIINNNPETVSTDFSTADKLYFEPLITEDVMNIIEKEQPEGVVLQFGGQ 639

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                        ++I  T +  +  A   ++  +         P   ++      ++  
Sbjct: 640 TAIKLANDLAAAGVKIIGTSADKIDEAEDRERFEAMMEKLDIKRPKGRAVWKIEPGIEIA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIE+    
Sbjct: 700 NSVGYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPENPVLIDKYLNGIEIEIDA 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V P+K   +    ++   A    + +  
Sbjct: 760 ICDGEDVLI----PGIMEHLERAGVHSGDSITVYPSKNLYEGTEVKILDYAKKIAKELEI 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    F+      +++ +E+N +   T     P ++   G    EL   
Sbjct: 816 SGMMNIQFI--AFENEIYVIEVNPRSSRT----VPYISKVTGVPMIELATK 860



 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  I+ +                       V  V+   +PD    
Sbjct: 28  SGTQACEALKQEGIEVVLINSNPATIMTDRAVADRIYIEPITIEFVEKVIKKERPDSILA 87

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +  V+           +++  T    +      D  R               
Sbjct: 88  GMGGQTALNIAVELYDSGILDKYNVKVIGTPIDSIKRGEDRDLFRDAMKKIGEPTIESKI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  ++    I  P V++P       G  +    Q +   LL+    +   Q+L+E+
Sbjct: 148 VENLKDGLEFAAQIGYPLVVRPAYTLGGSGGGIANDPQELEDILLKGLKLSRVGQVLVEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y+ ++  
Sbjct: 208 SILGW-KEVEYEVIRDENGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRTS 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      IG  G     F   P S K   +EIN  P ++  S     +   GY    +  
Sbjct: 267 SIKIINEIGVIGGCNVQFALHPKSFKYAIIEIN--PRVSRSS--ALASKATGYPIARVAT 322

Query: 291 WM 292
            +
Sbjct: 323 KL 324


>gi|296328096|ref|ZP_06870629.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296154767|gb|EFG95551.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 1058

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    +  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|145589201|ref|YP_001155798.1| carbamoyl phosphate synthase large subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145047607|gb|ABP34234.1| carbamoyl-phosphate synthase large subunit [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 1087

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+KV  +              DV          V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYKVILVNSNPATIMTDPEMADVTYIEPITWEVVERIIAAEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE        +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYGCELIGASPEAIDKAEDRQKFKNAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAHEVQQHIQQETGSSGFPVVIRPSFTMGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFSINPVDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKIAAKL 333



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   D G++   +         D D              V  ++A  KP       
Sbjct: 587 VHAALAMRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAKEKPKGVIVQY 646

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 647 GGQTPLKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEEEAL 706

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++   + +   + ++   +H   +L++++  D IE 
Sbjct: 707 KLAEEIGYPLVVRPSYVLGGRAMEIVHDGRDLERYMREAVKVSHDSPVLLDRFLNDAIEC 766

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +       +   +       +S  ++  + P  +     +E++R      + 
Sbjct: 767 DVDCISDGTKVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSDATVEEIKRQTAAMAKG 823

Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F    +  +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LHVIGLMNVQFAIQNVDGQDVIYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 875


>gi|19713902|gb|AAL94625.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
          Length = 1063

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 35  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 94

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 95  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 154

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +    +++   Q L+E+ 
Sbjct: 155 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 214

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    +  ++ ++
Sbjct: 215 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 273

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 274 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 329

Query: 292 M 292
           +
Sbjct: 330 I 330



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 585 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 645 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 705 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 765 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 821

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 822 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 865


>gi|161485660|ref|NP_603326.2| carbamoyl phosphate synthase large subunit [Fusobacterium nucleatum
           subsp. nucleatum ATCC 25586]
 gi|22095500|sp|Q8RG86|CARB_FUSNN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 66.0 bits (159), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAENFVKEIDYPVIVRPAFTMGGTGGGICYNEEDLHEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    +  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIGLKIPQPLGKTAFDVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLTKYMEKAVHINPDHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLEVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|315928272|gb|EFV07588.1| D-alanine--D-alanine ligase family protein [Campylobacter jejuni
           subsp. jejuni DFVF1099]
          Length = 257

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/222 (19%), Positives = 90/222 (40%), Gaps = 5/222 (2%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            N++HG  GEDG + A+ E   I +    + AS LS +K  +K    S GV      ++ 
Sbjct: 2   INLIHGRDGEDGKIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILR 61

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYV 172
           +     +  +S P +IKP + GSS+GI ++K ++ +         +++    +       
Sbjct: 62  KNQNSKE-KLSFPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIK 120

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +     C +  +    + E    K      +   S      ++ A +  ++ ++++    
Sbjct: 121 EYNLAGCMINDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFK 180

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
             +  +    + R DF       +++  EIN  PG     +F
Sbjct: 181 KIYNPLFKGALIRCDFFIL--DNEIYLNEINPNPGSLANYLF 220


>gi|322419241|ref|YP_004198464.1| carbamoyl-phosphate synthase large subunit [Geobacter sp. M18]
 gi|320125628|gb|ADW13188.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M18]
          Length = 1082

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFQVVLLNSNPATIMTDPDFADATYIEPVTPEVLAAIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V       LE   +    + + A  ++ D+   K+ +   G+ +  S  
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKMAEDRTLFKEAMVRIGLDIPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               + +MD    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQESMDVIKHVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    L  +   N++             G   
Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +             
Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEEAEAVAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + V    +   +           ++  + P  I  +I +E++R   +    +  +G
Sbjct: 778 CDGKVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISPEIVEEIRRQTKVMALELNVKG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +     +  ++ +E+N +   T     P ++   G    ++   
Sbjct: 835 LMNVQYAV--KNDDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877


>gi|91775132|ref|YP_544888.1| carbamoyl-phosphate synthase large subunit [Methylobacillus
           flagellatus KT]
 gi|91709119|gb|ABE49047.1| carbamoyl-phosphate synthase large subunit [Methylobacillus
           flagellatus KT]
          Length = 1068

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D +            V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPVTWQMVEKIIAIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYHVELIGASKEAIDKAEDREKFKAAMTKIGLGSARSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNREEFMTICERGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSQDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 86/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  KP+       G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPEGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELDLKQPPNRTARTPEEAIRLAQE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++ +   +   + ++   ++   +L++++++          
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               DV    + +    +      S  S    P  +   +  E++       +A+G  G+
Sbjct: 762 SDGEDVIIGGIMEHVEQAGVHSGDSACSLP--PYSLSPAMQDELREQTVKMAKALGVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 820 MNVQFAI--QGETVYVLEVNPRASRT----VPFVSKACGLQLAKIAAR 861


>gi|224371825|ref|YP_002605989.1| CarB2 [Desulfobacterium autotrophicum HRM2]
 gi|223694542|gb|ACN17825.1| CarB2 [Desulfobacterium autotrophicum HRM2]
          Length = 1074

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVILVNSNPATIMTDPETADRTYIEPVTPETLAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  V      +LE   +    + + A   + D+   R         +P    
Sbjct: 89  TLGGQTGLNTAVEAANMGVLERYNVEMIGASLEAINKAEDRELFRDAMNKIGLRIPESGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  V    + +          +   Q+++E+
Sbjct: 149 AHNMAEVETISARIGFPIIVRPSFTLGGTGGGVAYNPEELADLAKSGLDASMITQVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         I     +  +  +      +          +        
Sbjct: 209 SVLGWKEYELEVMRDHAGNVVIVCSIENIDAMGVHTGDSLTVAPAQTLSDKEYQVLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMQEIGVDTGGSNVQFAINPENGEMIIVEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 83/289 (28%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   +         D D              V  ++   KP        G   
Sbjct: 587 ALREEGVESIMVNSNPETVSTDYDTSDKLYFEPLTREDVLHIVEKEKPFGVIVQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  +      + I  T    +  A   D+ +          P     +           
Sbjct: 647 LNLAMDLERAGVPIIGTSPDSIDRAEDRDRFQEMLDKLGIAQPANGIAVNIEEAYAVAEK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++    ++      +   +    +LI+Q+++          
Sbjct: 707 IGYPVMVRPSFVLGGRAMKIVYDRSALEEYFNLAVLASPDHPVLIDQFLEDAFELDVDAI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIGCRG 242
               +     +     +  E    S +S  VLP      ++ +    A     + +  +G
Sbjct: 767 SDGENTVIGGM---MEHIEEAGIHSGDSACVLPPYSISKVHIDEMTEAAKALAKELKVKG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F    +  KV+ +E+N +   T     P ++   G    +L   
Sbjct: 824 LMNIQFGI--MDDKVYVIEVNPRASRT----IPFVSKATGVPLAKLATK 866


>gi|86607714|ref|YP_476476.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
 gi|86556256|gb|ABD01213.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 1082

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPSMAERTYIEPVTVDFVAKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  V    Q ILE   +    +   A   + D+   KQ +   G+ V  S  
Sbjct: 89  TMGGQTALNVAVQLAQQGILEQYGVELIGAKREAIEKAEDRDLFKQAMQRIGLAVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V    +            +   Q+L+E+
Sbjct: 149 AHTLEEAKQIAQEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENMDPMGVHTGDSITVAPAQTLTDKEYQRLRDYA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAVNPANGEVRVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 84/284 (29%), Gaps = 28/284 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL   G++   +         D D +  L    L  +   N++             G   
Sbjct: 585 ALSRLGYEAIMVNSNPETVSTDYDTADRLYFEPLTHEEVMNLVDAEQPVGLIVQFGGQTP 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I  T    +  A    +            P          +++    
Sbjct: 645 LKLAQGLAAAQAPIWGTSPDSIDIAEDRGRFERILRELDIRQPANGIARSVEESLEIARR 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   +  + + +    +L++Q+++   +   V  
Sbjct: 705 IGYPVVVRPSYVLGGRAMEIVYSDQDLQRYMQLAVAVDPDRPVLVDQFLE-EAVEVDVDA 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A            +       +S  ++  +    +  ++ + ++       QA+   G+
Sbjct: 764 IADRTGAVTIGGILEHIEQAGIHSGDSACVLPSRTLSPEVLRVIREWTVKLAQALKVVGL 823

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
               +       +V+ LE N +   T     P ++   G+   +
Sbjct: 824 INVQYAV--QKGQVYILEANPRASRT----VPFVSKAIGHPLAD 861


>gi|222099079|ref|YP_002533647.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
 gi|221571469|gb|ACM22281.1| Methyltransferase type 11 [Thermotoga neapolitana DSM 4359]
          Length = 137

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 25/103 (24%), Positives = 42/103 (40%), Gaps = 4/103 (3%)

Query: 197 SDFYSYELKYSSLNSTHVL---PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                YE K+   +    +   PA++P +  K +        + + CR   R D+  D  
Sbjct: 29  PRICGYEAKWLPDSPYWNIKSVPAQLPEETEKFIIECCLKLFERLECRDYCRFDWRLDAE 88

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                 LE+N  PG        +MA  AG S+ E+L  +++ A
Sbjct: 89  GN-PKLLEVNPNPGWCWDGHLAKMAKIAGMSYAEMLEAILKAA 130


>gi|91788540|ref|YP_549492.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666]
 gi|91697765|gb|ABE44594.1| carbamoyl-phosphate synthase large subunit [Polaromonas sp. JS666]
          Length = 1076

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE  ++    +   A   + D+++ K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLWHHGVLEKYKVELIGAKPEAIDKAEDRLKFKEAMTKIGLGSARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +    +   +   +    +  ++LLIE+
Sbjct: 149 AHSMDEAWAVQKTVGFPTVIRPSFTLGGTGGGIAYNPEEFEVICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 580 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 640 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELKLRQPPNATARTEPEAL 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   +H   +L++++++   + 
Sbjct: 700 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSHDSPVLLDRFLN-DAIE 758

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  +   E++R      QA+
Sbjct: 759 CDVDCIRDDKGVTFIGGVMEHIEQAGVHSGDSACSLPPYSLRAETVTEIKRQTAAMAQAL 818

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F    +  K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 819 NVVGLMNVQFAIQNIDGKDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 869


>gi|125974372|ref|YP_001038282.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005549|ref|ZP_05430509.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|281418918|ref|ZP_06249936.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|125714597|gb|ABN53089.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990457|gb|EEU00579.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|281407375|gb|EFB37635.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|316941530|gb|ADU75564.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 1313]
          Length = 1067

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 93/291 (31%), Gaps = 29/291 (9%)

Query: 24  SALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNF 62
             L++ GF+   I         D D S            V  ++   KP        G  
Sbjct: 583 KTLKEMGFEAIIINNNPETVSTDFDTSDKLYFEPLTKECVLDIIEKEKPLGVIVQFGGQT 642

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       E + I  T    +  A   D+  +        +P   +            
Sbjct: 643 SINLAGTLAKEGVNILGTSVESIDIAEDRDRFLNLLEELGIPLPEGDTAFSYEEAKAIAQ 702

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + V+  D+++   +  +        +LI++Y++G E+    +
Sbjct: 703 RIGYPVLVRPSYVLGGRAMEVVYNDETLKEYMQLAVGLATNHPVLIDKYIEGKEVEVDGI 762

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  + +   P  +  +    +        +A+   G
Sbjct: 763 CDGEDVLIPGIMEHIERAG---VHSGDSISIYPPQTLDDETKNTIVDYTIRLAKALKIVG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+ D  S KV+ +E+N +   T     P M+   G    ++    +
Sbjct: 820 LFNIQFVIDRHS-KVYVIEVNPRASRT----VPVMSKVTGIPMVDVATKFI 865



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                       V  ++   KPD    
Sbjct: 29  SGTQACKALREEGIEVVLVNSNPATIMTDTQSADRVYIEPITLDFVKKIIRREKPDGILA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  +Q     IL+ + I    + + +   + D+   +         VP+   
Sbjct: 89  SLGGQTGLNMAIQLAEDGILDEMGIELLGTSLESIRKAEDRELFKKTMQEIGEKVPLSTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +   Q+L+EQ
Sbjct: 149 ATDLDSAVKFAEEVGFPIIIRPAYTLGGTGGGIAHNMEEFKYICGKGLKLSLIHQVLLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D + I     +F    +                ++  + ++  
Sbjct: 209 SVAGWKEIEYEVIRDGADNSIIICNMENFDPVGVHTGDSIVVAPCQTLSDVE-AQMLRAA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+  +G     +  +P S +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 SLKIIRALNIKGGCNIQYALNPNSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|262276862|ref|ZP_06054655.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium
           HIMB114]
 gi|262223965|gb|EEY74424.1| carbamoyl-phosphate synthase, large subunit [alpha proteobacterium
           HIMB114]
          Length = 1069

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              D+       D+ +  ++   KPD    
Sbjct: 29  SGSQACKALRQEGYKIILVNSNPATIMTDPNVADITYIEPINDQVLEEIIKKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +    + IL+   +    +   A   + ++ + K+ ++  G+    S +
Sbjct: 89  TMGGQTGLNAAMSLDQKGILKKYNVELIGANAEAIDNAENREKFKKNMNEIGLESARSYI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P +I+P       G  V   +Q     +      +  +++L+E+
Sbjct: 149 CRNEEDAKEAYKNIGVPSIIRPSFTLGGTGGGVANTEQEFFQIIKNGLDLSPTNEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLVGWKEFEMEVVRDKKDNAIIVCSIENLDPMGIHTGDSITVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVETGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/167 (12%), Positives = 58/167 (34%), Gaps = 10/167 (5%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P VI+P        + ++  D+     + ++   +    +LI+++  D IE+    
Sbjct: 707 KIGYPIVIRPSYVLGGRAMEIVHDDEQFNTYIEEAVQVSGDSPVLIDKFLNDAIEIDVDA 766

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D         +   +           ++  + P  +   + +E+++      + +   
Sbjct: 767 VCDGQDVFIAGIMEHIEEAGIHSG---DSACCIPPFSLDEKLIQELKQQTTSLAKKLNVI 823

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F        ++ LE+N +   T     P ++        ++
Sbjct: 824 GLINIQFAIRGSD--IYILEVNPRASRT----VPYVSKALNIPVAKI 864


>gi|227511346|ref|ZP_03941395.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           buchneri ATCC 11577]
 gi|227085396|gb|EEI20708.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           buchneri ATCC 11577]
          Length = 1021

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L + G+ V  ++ +                      S+  +L    PD     
Sbjct: 30  GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKEHPDAILPT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   ++ +         +P   ++
Sbjct: 90  LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  H I  P +I+P       G  +   D  +   L +  + +   + LIE+ 
Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62
           C  A++ AG     I         D   S  L    L  D   NV+              
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKTMGVIVEFGG 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120
                +   L    +    + +     + ++   + ++    +        +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNSEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D         +   +           +     P  +  +  +++  +A    + +  
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P M+        +L   ++
Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|46578579|ref|YP_009387.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120603844|ref|YP_968244.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           DP4]
 gi|46447990|gb|AAS94646.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. Hildenborough]
 gi|120564073|gb|ABM29817.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio vulgaris
           DP4]
 gi|311232504|gb|ADP85358.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           RCH1]
          Length = 1077

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G  G +  +       L E      G   + +   + R    ++   +    P    
Sbjct: 89  TLGGQTGLNTALALAASGVLDECGVELIGANRAVIEKAESRELFRLAMANIGLKVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    + +     +  + +   +++IEQ
Sbjct: 149 ARSMDDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIASRGLTASITSEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +         ++        
Sbjct: 209 SVLGWKEYEMEVMRDKADNCVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFGINPDNGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/263 (12%), Positives = 83/263 (31%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KPD       G    +  V      + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVMHIIEAEKPDGVIVQFGGQTPLNLAVPLQRAGVPILGTSPDAID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   +++  R  +   + I  P V++P        + ++  
Sbjct: 675 RAEDRERFQALIHKLDLRQPANATVMNLRQAIAGANSIGYPVVVRPSYVLGGRAMEIVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +      S        +L++++++   E+    + D +       +   +       
Sbjct: 735 EEQLTSYFQNSVGEAPEHPILLDKFLENATEVDVDALSDGTDVYVAGIMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +P  I  E+ R      + +   G+    F        +F LE+N +
Sbjct: 795 ---DSACSIPPYSLPSSITDEISRQTVALAKELRVVGLMNIQFAV--KDGVIFILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++         L
Sbjct: 850 ASRTA----PFVSKATAVPLPRL 868


>gi|317497966|ref|ZP_07956271.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316894719|gb|EFV16896.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1077

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G       E+   + IL+   +      + +     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229
            + G       +         +           L   + +S    P     +  ++ +Q 
Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A+    ++   G +   F  DP++ ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 42.6 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           + AL+  GF+   +         D D S 
Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607

Query: 43  GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L                 KP        G    +   +     ++I  T   ++  A  
Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D  R         +P           ++    I  P +++P       G+ V+  D+S+
Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++          DA  D T   VP    +       S +
Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784

Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  +LP+    +   + ++       + +  +G+    +       KV+ LE N +   T
Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
                P ++         L   ++
Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862


>gi|291560089|emb|CBL38889.1| carbamoyl-phosphate synthase large subunit [butyrate-producing
           bacterium SSC/2]
          Length = 1077

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G       E+   + IL+   +      + +     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229
            + G       +         +           L   + +S    P     +  ++ +Q 
Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A+    ++   G +   F  DP++ ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 42.6 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           + AL+  GF+   +         D D S 
Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607

Query: 43  GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L                 KP        G    +   +     ++I  T   ++  A  
Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D  R         +P           ++    I  P +++P       G+ V+  D+S+
Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++          DA  D T   VP    +       S +
Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784

Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  +LP+    +   + ++       + +  +G+    +       KV+ LE N +   T
Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
                P ++         L   ++
Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862


>gi|167766145|ref|ZP_02438198.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1]
 gi|167712225|gb|EDS22804.1| hypothetical protein CLOSS21_00639 [Clostridium sp. SS2/1]
          Length = 1077

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 101/304 (33%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADETYIEPLNAERLEEIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G       E+   + IL+   +      + +     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCEELYKKGILDKYNVKVIGVQVDSIERGEDRIEFKKTMDELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q+L+E+
Sbjct: 149 AYSVEDGLKIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVMARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQR 229
            + G       +         +           L   + +S    P     +  ++ +Q 
Sbjct: 209 SILG--WEELELEVVRDAEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEECQQRLQE 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A+    ++   G +   F  DP++ ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAYKIVDSVQVIGGTNVQFAHDPVTDRIIVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 42.6 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 49/324 (15%), Positives = 100/324 (30%), Gaps = 47/324 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           + AL+  GF+   +         D D S 
Sbjct: 555 IMILGGGPN-------RIGQGIEFDYCCVHASQALKKMGFETIIVNCNPETVSTDYDTSD 607

Query: 43  GLVLA------------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L                 KP        G    +   +     ++I  T   ++  A  
Sbjct: 608 KLYFEPLTVEDVLSIYNKEKPLGVIAQFGGQTPLNIAAELEKNGVKILGTSPSVIDLAED 667

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D  R         +P           ++    I  P +++P       G+ V+  D+S+
Sbjct: 668 RDLFREMMDKLEIPMPESGMATTVEEALEIAGKIGYPVMVRPSYVLGGRGMEVVYDDESM 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++          DA  D T   VP    +       S +
Sbjct: 728 AGYMKAAVGVTPDRPILIDRFLN---HAMECEADAISDGTHAFVPAVMEHIELAGVHSGD 784

Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  +LP+    +   + ++       + +  +G+    +       KV+ LE N +   T
Sbjct: 785 SACILPSVHISEENLETIKEYTRKIAEEMHVKGLMNMQYAI--EDDKVYVLEANPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
                P ++         L   ++
Sbjct: 843 ----VPLVSKVCNVRMVPLATQII 862


>gi|322817889|gb|EFZ25470.1| hypothetical protein TCSYLVIO_8369 [Trypanosoma cruzi]
          Length = 789

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 21/262 (8%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   +  +++ + +S     V  ++     D+ FN+  G   E      ++E LE     
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138
                S          +++        P+ ++   T         +  P ++K L G +S
Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384

Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189
           +GI    +  ++    +   +     +  L+E+++ G E T     D            +
Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444

Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +   D ++Y  K  ++      +             +          +   G  R 
Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNESAYSFLPHNDPAYPHIIDTARNAFRHIMNGVGYGRV 504

Query: 247 DFLFDPLSRKVFWLEINVQPGM 268
           DF  DP    V++LEIN   GM
Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525


>gi|118594564|ref|ZP_01551911.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Methylophilales bacterium HTCC2181]
 gi|118440342|gb|EAV46969.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Methylophilales bacterium HTCC2181]
          Length = 1067

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            + V  ++   +PD    
Sbjct: 29  SGAQACKALTEEGYRVILVNSNPATIMTDPDLADATYIEPIQWQIVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     IL+   +    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDKHGILKKFNVELIGASKEAIDKAEDRQKFKEAMTGIGLASARSAI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +   L   +    +  ++LLIE+
Sbjct: 149 AHSMEEAIQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFMLICERGLDASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSNDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INILREIGVDTGGSNVQFAINPDDGRMCVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 91/286 (31%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D+GF+   I         D D              V  ++A   P        G   
Sbjct: 582 ALRDSGFETIMINCNPETVSTDYDTSDRLYFDPVTLEDVLEIVAKESPWGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    E + I  T    + +A   ++ ++         P   +       +     
Sbjct: 642 LKLAKALEGEGVPIIGTLPDDIDAAEDRERFQNILNELKLKQPPNKTARTPEEALVLAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   + ++   +H   +L++++  D +E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEKNDLERYMREAVKVSHESPVLLDRFLNDALEIDVDAI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   + K +        +A+   G
Sbjct: 762 SDGEDIVIGGIMEHIEQAG---VHSGDSACSLPPHTLTKIVQKMIIEQTKKMAKALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        ++ LE+N +   T     P ++   G    ++
Sbjct: 819 LMNVQFAI--QGENIYVLEVNPRASRT----VPFVSKAIGKPLAKI 858


>gi|83644090|ref|YP_432525.1| carbamoyl phosphate synthase large subunit [Hahella chejuensis KCTC
           2396]
 gi|83632133|gb|ABC28100.1| Carbamoylphosphate synthase large subunit [Hahella chejuensis KCTC
           2396]
          Length = 1075

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     R+V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPINWRTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +   A   + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLAREGVLEQYGVEMIGATQDAIDKAEDRERFDKAMKAIGLATPRSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEALQVLDQIGFPAIIRPSFTMGGSGGGIAYNKEEFIEICERGLELSPTRELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVETGGSNVQFGMDPETGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL D G++   I         D D S  L    +  +    ++H            G   
Sbjct: 587 ALRDDGYETIMINCNPETVSTDYDTSDRLYFEPITLEDVLAIVHLEKPRGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +   V      P   +       +     
Sbjct: 647 LKLARGLEEAGVPIIGTTPDAIDRAEDRERFQQMVVRLGLRQPPNATARSQEEALSKAKE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + ++  +  +   +  +   ++   +L++ +++  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEVELQRYMRDAVRVSNDSPVLLDHFLNAAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +P D+  +++         +   G
Sbjct: 767 SDGEKVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPADVQDKMRETVIKMALELQVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +      +     +++ +E+N +   T     P ++   G S  ++
Sbjct: 824 LMNVQLAY--QDGEIYVIEVNPRASRT----VPFVSKAIGVSLAKV 863


>gi|71416962|ref|XP_810430.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70874959|gb|EAN88579.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 789

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 87/262 (33%), Gaps = 21/262 (8%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   +  +++ + +S     V  ++     D+ FN+  G   E      ++E LE     
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138
                S          +++        P+ ++   T         +  P ++K L G +S
Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384

Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189
           +GI    +  ++    +   +     +  L+E+++ G E T     D            +
Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444

Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +   D ++Y  K  ++      +             +          +   G  R 
Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPHIIDTARNAFRHIMNGVGYGRV 504

Query: 247 DFLFDPLSRKVFWLEINVQPGM 268
           DF  DP    V++LEIN   GM
Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525


>gi|227508335|ref|ZP_03938384.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
 gi|227192224|gb|EEI72291.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           brevis subsp. gravesensis ATCC 27305]
          Length = 1021

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L + G+ V  ++ +                      S+  +L    PD     
Sbjct: 30  GSQACLSLREEGYSVILVNSNPATIMTDNEIADKVYLDPLTVPSLKKILEKEHPDAILPT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   ++ +         +P   ++
Sbjct: 90  LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  H I  P +I+P       G  +   D  +   L +  + +   + L+E+ 
Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62
           C  A++ AG     I         D   S  L    L  D   NV+              
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120
                +   L    +    + +     + ++   + ++    +        +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYIPGTECEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D         +   +           +     P  +  +  +++  +A    + +  
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P M+        +L   ++
Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|288561047|ref|YP_003424533.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter
           ruminantium M1]
 gi|288543757|gb|ADC47641.1| carbamoyl-phosphate synthase large subunit CarB [Methanobrevibacter
           ruminantium M1]
          Length = 1058

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 96/296 (32%), Gaps = 30/296 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +   +         D+D              V  ++     D    
Sbjct: 29  SGSQACKSLREEGLETVLVNSNPATIQTDMDMADTVYTEPLTAELVAQIIEKENIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +   +      LE +++  +    +A     D   +        +P C ++ 
Sbjct: 89  TMGGQTGLNIATELGKLGLLEGIKVIGSDVQTIADVEDRDLFANFMDRLDEPIPKCHAVE 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +++P       G  +    + +          ++ +Q+LI++ V
Sbjct: 149 SVEGALEAVEEIGYPVIVRPAFTLGGTGGGIAHNKEELIEVTTHGLDMSYINQVLIDESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G             + T I V   +       ++  +        +  ++ + ++  + 
Sbjct: 209 LGW-KEIEFEVMRDKNDTCIIVCNMENVDPMGIHTGDSIVVAPIQNLNDEVCQRLRDASI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              + +G  G     F  +P + +   +E+N  P ++  S     +   GY   ++
Sbjct: 268 KIIRNLGINGGCNIQFALNPETNEYKIIEVN--PRVSRSS--ALASKATGYPIAKI 319



 Score = 44.5 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 30/290 (10%), Positives = 88/290 (30%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVLHGNFG 63
           AL+D G +   +           DV   +            ++  ++P+       G   
Sbjct: 572 ALKDQGIETILVNNNPETVSTDYDVSDDLFFEPLTYEDIMGIIEQVEPEGVIVQFGGQTS 631

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      ++I  T    +      ++                         ++   
Sbjct: 632 INLSVPLAKAGVKILGTPYESIDRVEDRERFTEVLNDLHIHQAPYGLANSFDEAKEAAER 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++     +   + ++   +    +L++++  D +EL   ++
Sbjct: 692 IGFPVLVRPSYVIGGRAMEIVYGVDELEEYMKEAVKVSPEHPILVDKFLEDAVELDVDLL 751

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  IP  + + ++         +   G
Sbjct: 752 CDGEDVFIAGIMEHIEEAG---VHSGDSACVIPPQTIPEHLLEVIRENTRKLALELDVIG 808

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       +V+ +E N +   T     P ++   G    ++   +
Sbjct: 809 LMNIQYAVKLDEERVYIIEANPRASRT----VPFVSKAIGVPLAKVATSL 854


>gi|224476306|ref|YP_002633912.1| carbamoyl phosphate synthase large subunit [Staphylococcus carnosus
           subsp. carnosus TM300]
 gi|254813602|sp|B9DPN2|CARB_STACT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222420913|emb|CAL27727.1| carbamoyl-phosphate synthase, large chain [Staphylococcus carnosus
           subsp. carnosus TM300]
          Length = 1057

 Score = 66.0 bits (159), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S +V
Sbjct: 90  LGGQTGLNMAIQLHDSGVLESNNVQLLGTKLSSIQQAEDRELFRSLMNELDVPVPESDIV 149

Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N              P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVTNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSMNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTVEDVMNIIDLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +   + ++I  T    L  A    +  +         P   +       +++   
Sbjct: 640 INLAEKLAEKGVQILGTSLENLNRAEDRKEFEALLNKIDVPQPKGKTATSPEEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + ++   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYNDAELGNYIREAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  K ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEDIKTLESYTTKLAKGLDIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVLAHDG--VYVLEVNPRSSRT----VPFLSKITNIPMAQLAMRAI 860


>gi|297539178|ref|YP_003674947.1| carbamoyl-phosphate synthase large subunit [Methylotenera sp. 301]
 gi|297258525|gb|ADI30370.1| carbamoyl-phosphate synthase, large subunit [Methylotenera sp. 301]
          Length = 1068

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWQVVEKIIAKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L   ++    +   A   + D+ + K+ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDKHGVLAKYKVELIGASKEAIDKAEDRQKFKEAMTKIGLGSARSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHSMEEALQVQASIGYPTIIRPSFTMGGSGGGIAYNREEFISICERGLDASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSADNCIIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.049,   Method: Composition-based stats.
 Identities = 33/265 (12%), Positives = 84/265 (31%), Gaps = 10/265 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  KP        G              + I  T    + 
Sbjct: 608 DRLYFEPVTL---EDVLEIVALEKPVGVIVQYGGQTPLKLARDLEKAGVPIIGTTPDAID 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +       +     I  P V++P        + ++++
Sbjct: 665 MAEDRERFQKMLQELGLKQPPNRTARTPDEAIRLALEIGYPLVVRPSYVLGGRAMEIVQE 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   + ++   ++   +L++++++   L   V          I     +       +
Sbjct: 725 QSQLERYMREAVKVSNESPVLLDRFLN-DALEVDVDALCDNTGDVIIGGIMEHVEQAGVH 783

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  + P  +   +  E++       +A+G  G+    F      + VF LE+N + 
Sbjct: 784 SGDSACSLPPFSLSAKLQDELRDQTKQMARALGVVGLMNVQFAI--QGKTVFVLEVNPRA 841

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P ++   G    ++   
Sbjct: 842 SRT----VPFVSKACGLQLAKVAAR 862


>gi|288818559|ref|YP_003432907.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787959|dbj|BAI69706.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308752149|gb|ADO45632.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 557

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  +         D                +  ++   +PD    
Sbjct: 29  SGTQACRALKEEGYSVVLVNSNPATIMTDPSVADRTYIEPLTVEVLEEIIKAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + ILE   +    +   A     D+   ++ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVKLYEEGILERYGVELIGASYQAIKKGEDRELFRESMKKIGLKVPESAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M     I  P +++P       G  +    +     L  +   +   Q+L+++
Sbjct: 149 VSSLEEGMSVIKSIGFPTILRPAFTLGGTGGAIAYNIEEFKEKLEVALKTSPIHQVLMDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEFEFEVIRDSKDNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAC 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +   + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IEVMREVGVDTGGSNIQFAVNPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|167756066|ref|ZP_02428193.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402]
 gi|237734052|ref|ZP_04564533.1| carbamoyl-phosphate synthase large subunit [Mollicutes bacterium
           D7]
 gi|167704058|gb|EDS18637.1| hypothetical protein CLORAM_01586 [Clostridium ramosum DSM 1402]
 gi|229382878|gb|EEO32969.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. D7]
          Length = 1072

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 106/304 (34%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +   +      LE   +      + A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQSALNLCSELNEAGVLEKYNVQVLGVQVDAIERGEDRLEFKKEMDKLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +   + +    +   Q LIE+
Sbjct: 149 STTVEEALAIAERLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVGQCLIEE 208

Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G E     V+ DA+ ++  +   ++          S  S  +L   I  ++   ++ 
Sbjct: 209 SILGWEELEVEVVRDANNNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            AF   ++IG  G +   F  DP + ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAFRIVESIGVIGGTNVQFAHDPETDRIVVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 93/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T    +  A   D   +        +P     +     ++    
Sbjct: 641 LNLAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDDESLEQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + VP    +       S +S  +LP   IP+   + ++       + +  RG
Sbjct: 758 DAISDGETVFVPAVMEHIELAGIHSGDSACILPSKHIPIRHLETIKEYTKKIAKEMNVRG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +       KV+ LE N +   T     P ++     +  ++   +V
Sbjct: 818 LMNMQYAI--ADDKVYVLEANPRASRT----VPLVSKVCNINMVKIATDIV 862


>gi|317496859|ref|ZP_07955189.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|316895871|gb|EFV18023.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1066

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 32/297 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G++   +         D D              V  ++   KPD A     G   
Sbjct: 582 ALSKEGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++      ++  H 
Sbjct: 642 IKLTEALMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHK 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   + +     +LI++Y+ G E+    + 
Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  V P+    D I + +        +++   G
Sbjct: 762 DGTDILI----PGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F+      +V+ +E+N +   T     P ++   G     L   ++  A   
Sbjct: 818 LINIQFIV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGAKIR 868



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKIIEKEKPDSILPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    +++  T    +  A    + +         +     +
Sbjct: 90  LGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTMEKIGEPIAAGQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++   +I  P V++P       G  +    + +   L      +   ++L+E+Y
Sbjct: 150 KTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLRLSRVGEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGW-KEVEYEVMRDENGTCITICNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M--------VEDASCLR 300
           +        +E+A   +
Sbjct: 325 IAIGYTLDEIENAVTKK 341


>gi|167765823|ref|ZP_02437876.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1]
 gi|167712540|gb|EDS23119.1| hypothetical protein CLOSS21_00314 [Clostridium sp. SS2/1]
 gi|291559181|emb|CBL37981.1| carbamoyl-phosphate synthase, large subunit [butyrate-producing
           bacterium SSC/2]
          Length = 1066

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 96/297 (32%), Gaps = 32/297 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G++   +         D D              V  ++   KPD A     G   
Sbjct: 582 ALSKEGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVESIVDLEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++      ++  H 
Sbjct: 642 IKLTEALMKMGVPILGTSAENVDAAEDRELFDEILEECCIPRPKGTTVFTCEEALEVAHK 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   + +     +LI++Y+ G E+    + 
Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAVSDEDITAFMEVINRYEQEHPILIDKYLVGKEVEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  V P+    D I + +        +++   G
Sbjct: 762 DGTDILI----PGIMEHVERAGIHSGDSISVYPSINLTDRIKRIIAEYTRKLAKSLHVIG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F+      +V+ +E+N +   T     P ++   G     L   ++  A   
Sbjct: 818 LINIQFIV--ADDEVYVIEVNPRSSRT----VPYISKVTGIPIVALAAKVITGAKIR 868



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRALQEEGVEVVLVNSNPATIMTDKDIADKVYIEPLTASVIEKIIEKEKPDSILPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    +++  T    +  A    + +         +     +
Sbjct: 90  LGGQAALNLAMELVESGYLEKSGVKLIGTSPSTIKKAEDRLEFQQTMEKIGEPIAAGQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++   +I  P V++P       G  +    + +   L      +   ++L+E+Y
Sbjct: 150 KTVEDGVEFAKVIGYPAVLRPAYTLGGSGGGIAHNQEELETILENGLRLSRVGEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGW-KEVEYEVMRDENGTCITICNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELDVHGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M--------VEDASCLR 300
           +        +E+A   +
Sbjct: 325 IAIGYTLDEIENAVTKK 341


>gi|229592648|ref|YP_002874767.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           SBW25]
 gi|229364514|emb|CAY52369.1| carbamoyl-phosphate synthase large chain [Pseudomonas fluorescens
           SBW25]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANSVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 87/284 (30%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L  +   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEDELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|312127411|ref|YP_003992285.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777430|gb|ADQ06916.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1077

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVRVAEK 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALRVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVSLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|301066501|ref|YP_003788524.1| carbamoylphosphate synthase large subunit [Lactobacillus casei str.
           Zhang]
 gi|300438908|gb|ADK18674.1| Carbamoylphosphate synthase large subunit [Lactobacillus casei str.
           Zhang]
          Length = 1060

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +   ++ +        + +   Q+L+E+
Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P+       G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        + + C G
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855


>gi|227535062|ref|ZP_03965111.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
 gi|227187277|gb|EEI67344.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus paracasei
           subsp. paracasei ATCC 25302]
          Length = 1060

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +   ++ +        + +   Q+L+E+
Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P+       G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        + + C G
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855


>gi|261367606|ref|ZP_05980489.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum
           variabile DSM 15176]
 gi|282570394|gb|EFB75929.1| carbamoyl-phosphate synthase, large subunit [Subdoligranulum
           variabile DSM 15176]
          Length = 1078

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +   +         D D              V  ++   KPD    
Sbjct: 29  SGTQACRALKSEGVETVLVNSNPATIMTDPDIADHVYIEPLTAEVVERIIEKEKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  +       L+   +            + D+   +         +     
Sbjct: 89  NLGGQMGLNLSMELARNGFLDRSGVRLLACKPETIDRAEDRQLFKDTMEKLHQPIIPSKV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D   +I  P +++P       G  + +  + +          +   Q+L+E+
Sbjct: 149 VEDLDDALDFAEVIGYPVIVRPAFTMGGTGGGICEDREKLHEIATNGLRLSPIHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 CISGWKEIEYEVMRDSKGNVITVCNMENLDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A      +G  G     F   P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/250 (12%), Positives = 77/250 (30%), Gaps = 10/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            SV  ++A  KPD       G              L I  T +  +  A   ++      
Sbjct: 616 ESVDNIIATEKPDGCLVQFGGQTAIKLAKHMDDIGLPILGTPADAIDEAEDRERFDELLE 675

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS- 158
                 P   ++      + +   +  P +++P        +IV      +   +   + 
Sbjct: 676 RCGIPRPEGRTVYTLDEALKAAQEVGYPVLMRPSYVLGGQNMIVAYNSADVIEYMGVITA 735

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +    +L+++Y+ G E     + D +  +    + + +       +S  +     P  
Sbjct: 736 HVDMSHPVLMDKYIYGTECEVDAICDGTDYLVPGIMEQIERTG---VHSGDSICVYPPYN 792

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
               +   +        + +   G+    +       KV+ +E+N +   T     P ++
Sbjct: 793 FSQKVIDTLVDYTGRFARELKVVGLVNVQYAV--QDGKVYVIEVNPRSSRT----VPYIS 846

Query: 279 AYAGYSFREL 288
              G    +L
Sbjct: 847 KVTGVPMVDL 856


>gi|222152897|ref|YP_002562074.1| carbamoyl phosphate synthase large subunit [Streptococcus uberis
           0140J]
 gi|254813606|sp|B9DRV7|CARB_STRU0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|222113710|emb|CAR41663.1| carbamoyl-phosphate synthase large chain [Streptococcus uberis
           0140J]
          Length = 1058

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 89/271 (32%), Gaps = 12/271 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  V+   +P+       G    +         + I  T    L 
Sbjct: 606 DKLYFEPLTV---EDVMNVIDLERPEGVILQFGGQTAINLAEALDKANVPILGTQVRDLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A +           +   P+  ++   +  +     I  P +++P        + ++ +
Sbjct: 663 RAENRQLFEKALHDINIPQPLGQTVTNEQEALQVARRIGFPVLVRPSYVIGGRAMQIVTQ 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  +   +    +LI+ Y+ G E     + D    +    +   +       +
Sbjct: 723 EEDLLTYMQSAVKVSSDQPVLIDSYILGQECEVDAISDGQDVLIPGIMEHIEAAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +  DI + +          + C+G+    F+     + V+ +E+N + 
Sbjct: 780 SGDSMAVYPPQNLSEDIIQTIIDYTKRLAINLNCKGMMNIQFVV--KDKTVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             T     P M+   G    ++   ++  +S
Sbjct: 838 SRT----VPFMSKVTGIPMAQVATKLILGSS 864



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 85/293 (29%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++                         V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADRVYIEPLTTEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +      +               +  A   ++ ++        +P    +
Sbjct: 90  LGGQTGLNLAMSLSETGILNELGVELLGTKLSAINQAEDREQFKALMKALKQPIPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   D  +     +    +  +Q LIE+ 
Sbjct: 150 HSVEEALLFASQIGYPVIVRPAFTLGGTGGGICTNDIELEDITAKGLKLSPVNQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPSQTLSDYEHQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+   G        DP S   + +E+N  P ++  S     +   GY 
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFDYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|191638448|ref|YP_001987614.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus casei BL23]
 gi|239631462|ref|ZP_04674493.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|226700930|sp|B3WEF5|CARB_LACCB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|190712750|emb|CAQ66756.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Lactobacillus casei BL23]
 gi|239525927|gb|EEQ64928.1| carbamoyl-phosphate synthase pyrimidine-specific [Lactobacillus
           paracasei subsp. paracasei 8700:2]
 gi|327382480|gb|AEA53956.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei LC2W]
 gi|327385678|gb|AEA57152.1| Carbamoyl-phosphate synthase large chain [Lactobacillus casei
           BD-II]
          Length = 1060

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +   ++ +        + +   Q+L+E+
Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P+       G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        + + C G
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFII--HDGKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855


>gi|116494938|ref|YP_806672.1| carbamoylphosphate synthase large subunit [Lactobacillus casei ATCC
           334]
 gi|122263644|sp|Q038Z2|CARB_LACC3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116105088|gb|ABJ70230.1| carbamoyl-phosphate synthase large subunit [Lactobacillus casei
           ATCC 334]
          Length = 1060

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLTAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +   ++ +        + +   Q+L+E+
Sbjct: 149 ANNIEEAQQFADKIGFPVIIRPAFTMGGTGGGIANNEKELAEIAENGLNLSPVTQVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P+       G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLANRGIKILGTSVEDLNRAEDRDLFDQVIKSLKLPQPEGGTATDKAGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDATELDNYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        + + C G
Sbjct: 759 SDGDTVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRTLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFIIHA--GKAYVIEVNPRASRT----VPFLSKVTNIKLAQV 855


>gi|315926045|ref|ZP_07922246.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315620659|gb|EFV00639.1| carbamoyl-phosphate synthase, large subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 1081

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 35/292 (11%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           CA AL + G++   +         D D              V  ++   KPD A     G
Sbjct: 593 CAWALRELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRAIVETEKPDGAIVQFGG 652

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    + +A   ++            P   ++      +  
Sbjct: 653 QTAIKLTQHLDAIAVPILGTDPRYIDAAEDRERFDELVESCGIPRPKGDTVFKTEEAVAV 712

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        +I+   D  +   +   ++    + +L+++Y+ G E+   
Sbjct: 713 ARRLGYPVLLRPSYVLGGQNMIIAHSDADVEEYMGIITAHEITNPVLVDKYLMGKEVEVD 772

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  + +   P  +   +   +        +A+  
Sbjct: 773 AICDGTDYLIPGIMEHVEKAG---VHSGDSISVYPPQTLSQKVRDTIVDYTGKLARALHV 829

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    ++   +   V+ +E+N +   T     P ++        ++   +
Sbjct: 830 IGLVNIQYVV--MDETVYVIEVNPRSSRT----VPYISKVTDIPMVDMATRI 875



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/312 (15%), Positives = 100/312 (32%), Gaps = 41/312 (13%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL  AG +V  I+ + +                     V  V+   KPD   + 
Sbjct: 30  GTQACKALRQAGLEVVLINSNPATIMTDKAMADEIYIEPLTLDVVKRVIQKEKPDGLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + +     + D+   K  +   G P  PS  +
Sbjct: 90  LGGQTGLNLSMQLAKEGFLEANGVALLGADVTTIDKAEDRQAFKDTMREIGEPTIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I  P +++P       G  +    +++     +    +   Q+LIE+ 
Sbjct: 150 ESLEDALDFAGQIGYPVIVRPAFTLGGTGGGIAAAPEALDHIATRGLRLSPIHQVLIERD 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +F      ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVMRDGKGNVITVCSMENFDP-VGIHTGDSIVVAPCQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA--Y 280
                 +   G     F  +P +     +E+N  P ++  S            ++AA   
Sbjct: 269 LKIISTLKVEGGCNCQFALNPDNFNYAVIEVN--PRVSRSSALASKATGYPIAKIAALIA 326

Query: 281 AGYSFRELLLWM 292
            G+S  E++  +
Sbjct: 327 VGFSLDEIVNDI 338


>gi|215404958|ref|ZP_03417139.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
          02_1987]
 gi|289746781|ref|ZP_06506159.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
          02_1987]
 gi|289687309|gb|EFD54797.1| D-alanyl-alanine synthetase A [Mycobacterium tuberculosis
          02_1987]
          Length = 157

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 13/49 (26%), Positives = 20/49 (40%)

Query: 5  MGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL 53
           GG S+E  +S  S  +    L+   F V  + +  +   VL    PD 
Sbjct: 2  FGGRSNEHAISCVSAGSILRNLDSRRFDVIAVGITPAGSWVLTDANPDA 50


>gi|212212332|ref|YP_002303268.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuG_Q212]
 gi|212010742|gb|ACJ18123.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuG_Q212]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D + + ILE   +    +   A   + D+   ++ +   G+    S  
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 98/294 (33%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +           D+             V  ++A  KP       
Sbjct: 588 VHAALVMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +      ++ ++         P   ++      +
Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRVEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
               + + P +++P        + VI  ++ +   + +    + G+ LL+++++D  IE+
Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +S    P  +  +I ++++    L  + 
Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +++ LE+N +   T     P +A   G    ++   
Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872


>gi|154707556|ref|YP_001424722.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway
           5J108-111]
 gi|154356842|gb|ABS78304.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii Dugway
           5J108-111]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D + + ILE   +    +   A   + D+   ++ +   G+    S  
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 99/294 (33%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +           D+             V  ++A  KP       
Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ ++         P   ++      +
Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
               + + P +++P        + VI  ++ +   + +    + G+ LL+++++D  IE+
Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +S    P  +  +I ++++    L  + 
Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +++ LE+N +   T     P +A   G    ++   
Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872


>gi|29654582|ref|NP_820274.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA
           493]
 gi|161830009|ref|YP_001597134.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           331]
 gi|29541850|gb|AAO90788.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii RSA
           493]
 gi|161761876|gb|ABX77518.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           331]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D + + ILE   +    +   A   + D+   ++ +   G+    S  
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +            +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNRDEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 99/294 (33%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +           D+             V  ++A  KP       
Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ ++         P   ++      +
Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
               + + P +++P        + VI  ++ +   + +    + G+ LL+++++D  IE+
Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +S    P  +  +I ++++    L  + 
Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +++ LE+N +   T     P +A   G    ++   
Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKIAAR 872


>gi|304311953|ref|YP_003811551.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           HdN1]
 gi|301797686|emb|CBL45908.1| Carbamoyl-phosphate synthase large chain [gamma proteobacterium
           HdN1]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 99/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  V+   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPAMADSTYIEPVNWQTVAKVIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ R  + + S G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLKEFGVELIGANADAIDKAEDRERFDRAMKSIGLETPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSLEEALQVQDRLGFPCIIRPSFTLGGSGGGIAYNREEFVEICNRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPSQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P+  ++  +E+N  P ++  S            ++AA  
Sbjct: 269 IAVLREIGVETGGSNVQFGINPVDGRMVVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  EL+  +
Sbjct: 327 AIGYTLDELMNDI 339



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIVALEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   +       +
Sbjct: 642 GGQTPLKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMINRLGLLQPPNRTARSEEEAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P V++P        + ++  +  +   + ++   ++   +L++ ++D     
Sbjct: 702 RYAEEIGYPLVVRPSYVLGGRAMEIVYSESELRRYMREAVQVSNDCPVLLDHFLDDAIEV 761

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +           + +    +      S  S    P  +  D+ + ++  A      +
Sbjct: 762 DLDLVSDGRTSVIGGILQHIEQAGIHSGDSACSLP--PYSLSADLQETMREQARRMAAEL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           G  G+    F        V+ LE+N +   T     P ++   G S  ++    +E  S 
Sbjct: 820 GVVGLMNVQFAV--KKNDVYVLEVNPRASRT----VPFISKCIGISLAKIAARCMEGTSL 873

Query: 299 LR 300
            +
Sbjct: 874 EK 875


>gi|126664879|ref|ZP_01735863.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17]
 gi|126631205|gb|EBA01819.1| carbamoyl-phosphate synthase large subunit [Marinobacter sp. ELB17]
          Length = 1072

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIIWSTVAKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L    +    +       + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALDLEKHGVLAKYGVEMIGANADTIDKAEDRSRFDKAMKSIGLECPRADI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +           ++    +   +LLI++
Sbjct: 149 AHNLEEAHRIADNVGFPCIIRPSFTMGGSGGGIAYNRGEFEEICIRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGIHPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/322 (11%), Positives = 100/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVDRSV 42
           + V+ GG +         G+          +AL   + G++   I         D D S 
Sbjct: 562 IVVIGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMINCNPETVSTDYDTSD 614

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    +  +    ++H            G              + I  T    +  A  
Sbjct: 615 RLYFEPITLEDVLEIIHVEKPKGVIVQYGGQTPLKLARGLEAAGVPIIGTSPDAIDCAED 674

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++  +   + +   I  P V++P        + ++  +  +
Sbjct: 675 RERFQKLIAGLGLKQPENATVRSHEEGVIAARKIGYPLVVRPSYVLGGRAMEIVYGEDEL 734

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L++ +++  IE+    + D    V    +   +           
Sbjct: 735 ERYMRSAVLVSNDSPVLLDHFLNAAIEVDIDAICDGKDVVIGGIMQHIEQAGIHSG---D 791

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +P D+   ++        A+   G+      +      ++ +E+N +   T
Sbjct: 792 SACSLPPYSLPADVQNAMRDAVKQMALALKVVGLMNVQLAW--QDGDIYVIEVNPRASRT 849

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S  ++   
Sbjct: 850 ----VPFVSKAIGVSLAKVAAR 867


>gi|329922673|ref|ZP_08278225.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           HGF5]
 gi|328942015|gb|EGG38298.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           HGF5]
          Length = 1068

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A    K  +         P   ++      +++   
Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+  ++  +     + +  RG+
Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELDQPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  +   ++ +   +     ++   Q LIE+ 
Sbjct: 150 TTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|212634060|ref|YP_002310585.1| carbamoyl phosphate synthase large subunit [Shewanella
           piezotolerans WP3]
 gi|212555544|gb|ACJ27998.1| Carbamoyl-phosphate synthase, large subunit [Shewanella
           piezotolerans WP3]
          Length = 1073

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELESRGVLKEFNVDMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMDEARAVLAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDCNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDTSDRLYFESITFEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIERLGMKQPENDTVTTVEGAVISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  DI   ++         +G  G
Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQDIQDRMREQVGKLAMELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|261405694|ref|YP_003241935.1| carbamoyl-phosphate synthase large subunit [Paenibacillus sp.
           Y412MC10]
 gi|261282157|gb|ACX64128.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus sp.
           Y412MC10]
          Length = 1068

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFNTSDRLYFEPLFFEDVMNVIEQEKPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A    K  +         P   ++      +++   
Sbjct: 648 INLAEPLSKAGVKILGTSLESIDEAEDRKKFEALLSRLEIAQPKGKTVTSVDDAVETAQS 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDSELLSYMKEAVKINPDHPVLIDRYMMGKEVEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+  ++  +     + +  RG+
Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQYLSQDLKDKIAEITIKIAKELNTRGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     L    +
Sbjct: 825 VNIQFVI--YKNEVYVIEVNPRSSRT----VPFLSKVTGIPMANLATQAI 868



 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITLDFVTQIIRQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGILEQENVKLLGTQLESIEKAEDRDLFRELMRELDQPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  +   ++ +   +     ++   Q LIE+ 
Sbjct: 150 TTLEEALEFANEIGYPVIVRPAYTLGGTGGGICATEEELRETVSSGLRYSPITQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPNSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|229541175|ref|ZP_04430235.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
 gi|229325595|gb|EEN91270.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
          Length = 1066

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL++ G+ V  ++ + +                     V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYHVVLVNSNPATIMTDTEMADKIYIEPLTPAFVARIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T  G +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNIAMELAKSGILDEYGVEVLGTRLGAIEQAEDREAFRELMGKLGEPVPDSMII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P +++P       G  + + ++ +   +      +   Q L+E+ 
Sbjct: 150 HTLEEAYRFIEKAGYPVIVRPAYTLGGTGGGICRNEEELIETVSGGLRQSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSEDHAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQFALDPDSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 92/294 (31%), Gaps = 31/294 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P+       G   
Sbjct: 578 AIQEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPEGVVVQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T    L  A   DK            P+  +       +     
Sbjct: 638 INLAEQLANRGVRILGTSLENLDRAEDRDKFDHLLNRLGIKRPLGKTGTSAEEAVRIAAE 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   +    +LI++YV G E    V+ 
Sbjct: 698 IGYPVLVRPSFVLGGRAMEIVYHEEDLRQYMKHAVKVSPNQPVLIDRYVTGQEFEVDVIA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    V   +       +S  +     P ++   +  E+          +  +G+
Sbjct: 758 DGRDILIPGIVEHIERAG---VHSGDSIAVYPPQRLSEALKAEMVETCRKLASELEIKGL 814

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F+      ++F +E+N       P ++ ++  P           E L  +
Sbjct: 815 MNIQFIVSH--NELFVIEVNPRSSRTVPFLSKITDVPMAKLAMKVILGESLENL 866


>gi|170727910|ref|YP_001761936.1| carbamoyl phosphate synthase large subunit [Shewanella woodyi ATCC
           51908]
 gi|169813257|gb|ACA87841.1| carbamoyl-phosphate synthase, large subunit [Shewanella woodyi ATCC
           51908]
          Length = 1072

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +LE   +    +   A   + D+ R  + + + G+    +  
Sbjct: 89  TMGGQTALNCALELESKGVLEEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHSMDEANAVVAELGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIERLGMKQPENDTVTTVEGAVLSAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNSSPVLLDRFLDNAIEIDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  DI   ++         +G  G
Sbjct: 767 CDGETVVVGSIMEHIEQAG---VHSGDSGCSLPPYSLSDDIQNRMREQVGKLAMELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|311068073|ref|YP_003972996.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
 gi|310868590|gb|ADP32065.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
          Length = 1071

 Score = 66.0 bits (159), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+   + +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSEQGVLQECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAENFVSKIGFPVIVRPAYTLGGTGGGICSNEIELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK            P+  +       +     
Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAEDRDKFEQALETLQVPQPLGKTATSVEQAVKIASD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTGDIKKKIEQYTIALAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVL--SKGEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|114321130|ref|YP_742813.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114227524|gb|ABI57323.1| carbamoyl-phosphate synthase large subunit [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 1078

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  +L   +PD    
Sbjct: 34  SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPIEWQTVARILEKERPDAVLP 93

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D   + +LE L I    +   A  ++ D+   ++ ++  G+    +  
Sbjct: 94  TMGGQTALNCALDLSREGVLERLGIEMIGANKEAIDMAEDRESFREAMARIGLETAHAEI 153

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+Q  I  P +++P       G  +    +       +    +  ++LLIE+
Sbjct: 154 AHSMEEALDAQKRIGFPTIVRPSFTLGGSGGGIAYNREEFIEICERGLDLSPTNELLIEE 213

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 214 SVLGWKEYETEVVRDKADNCIIICFIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 273

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 274 LAVLREIGVETGGSNVQFAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 329

Query: 291 WM 292
            +
Sbjct: 330 KL 331



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 89/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P+      
Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVEIERPEGIIVQY 646

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P   +       +
Sbjct: 647 GGQTPLKLARDLEAAGAPIIGTTPDSIDLAEDRERFQGLINKLGLKQPPNRTARSADQAL 706

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++  +  +   + ++   ++   +L+++++D  +E+
Sbjct: 707 RLAAEIGYPLVVRPSYVLGGRAMDIVYGEDELLQYMHEAVRVSNDSPVLLDRFLDDAVEV 766

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +  D+   ++         
Sbjct: 767 DVDAICDGEDVLIGGIMEHIEQAG---VHSGDSACSLPPYTLAPDVQDRLREQTRALALE 823

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 824 LGVVGLMNIQFAIKGSD--VYLLEVNPRASRT----VPYVSKAIGTPLAKVAAR 871


>gi|118580936|ref|YP_902186.1| carbamoyl-phosphate synthase, large subunit [Pelobacter propionicus
           DSM 2379]
 gi|118503646|gb|ABL00129.1| carbamoyl-phosphate synthase large subunit [Pelobacter propionicus
           DSM 2379]
          Length = 1078

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPDFADHTYIEPVTPEILARIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V      ILE   +    + + A   + D+   KQ + + G+ +  S  
Sbjct: 89  TLGGQTALNTAVAVAESGILERFGVELIGAKLPAIKKAEDRTLFKQAMENIGLAIPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  MD    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNRQEAMDVITCVGFPAIIRPSFTLGGSGGGIAYNMEEYEKMAVAGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGINPNDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 91/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++A  KP        G   
Sbjct: 594 ALAEDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLSIVAVEKPFGVIVQFGGQTP 653

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P             +   
Sbjct: 654 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLFKLELLQPENGIARSFEEAEKAAER 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 714 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMTTAVQASPEHPILIDKFLDEAIEIDVDAL 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  I  ++  E++R   L    +  +G
Sbjct: 774 CDGTEVVIGGIMEHIEEAGIHSG---DSACSLPPYSISPEMVAEIRRQTSLMALELNVKG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       +V+ LE+N +   T     P ++   G    ++   +
Sbjct: 831 LMNVQYAI--KDGRVYILEVNPRASRTA----PFVSKATGRPLAKIAARI 874


>gi|222529530|ref|YP_002573412.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456377|gb|ACM60639.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 1077

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 29/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D S            V  ++   KP        G   
Sbjct: 584 ALKEEGVEAIIINNNPETVSTDFDTSDKLFFEPLTKECVLDIIKQEKPMGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A   DK  +     +   P   +       +     
Sbjct: 644 INMASYLAKNGVKILGTSMESIDTAEDRDKFLNLLKNLNIPYPPGGAAYSLEDAVKVAQQ 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   +  +   +    +LI++Y+ G E     + 
Sbjct: 704 IGYPVLVRPSYVLGGRAMEIVYSREELEKYIKAAIEISIKHPILIDKYILGKEAEVDGIS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++        +A+   G+
Sbjct: 764 DGEDVLIPGIMEHIERAG---VHSGDSMAVFPPHTLSERVKEKIVDYTIKLARALRVVGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 821 FNIQFVID-KDENVYVIEVNPRASRT----VPILSKVTGIPMIKIATKLI 865



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ + +                     +  ++   +P     
Sbjct: 29  SGTQACRALKEEGIEVVLVNSNPATIMTDTEIADRVYIEPISVDYIEEIIKKERPQGLLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G        +     ILE   +    + +     + D+   +   +     VP    
Sbjct: 89  GLGGQTALNMAFELAEAGILEKYGVCLLGTSLETIKKAEDRELFKKTMIEIGEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++    +  P +++P       G  +   ++ +     +    +   Q+LIEQ
Sbjct: 149 AHSVQEAIEFAREVGYPVIVRPAYTLGGTGGGIAYNEEELRYIASKGLKLSLIHQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D         +       ++  +        +    Y+ ++  
Sbjct: 209 SVLGWKEIEYEVMRDSNDNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +++   G     F  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 SLNIIRSLKIEGGCNVQFALNPNSMEYVVIEVN--PRVSRSS--ALASKATGYP 317


>gi|153207476|ref|ZP_01946176.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165918965|ref|ZP_02219051.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           334]
 gi|212218697|ref|YP_002305484.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuK_Q154]
 gi|120576607|gb|EAX33231.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165917362|gb|EDR35966.1| carbamoyl-phosphate synthase, large subunit [Coxiella burnetii RSA
           334]
 gi|212012959|gb|ACJ20339.1| carbamoyl-phosphate synthase large chain [Coxiella burnetii
           CbuK_Q154]
          Length = 1073

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQACRALREEGYRVILVNSNPATIMTDPDLADATYIEPVHWEVIAKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D + + ILE   +    +   A   + D+   ++ +   G+    S  
Sbjct: 89  TMGGQTGLNCALDLVREGILEKYGVELIGASREAIDKAEDRSLFQKAMLKIGLQTPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   ++LI++
Sbjct: 149 AHSMEDAWKILEQVGFPAIIRPSFTLGGSGGGIAYNREEFLAICTRGLELSPTTEILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIAGWKEFELEVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFGINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 99/291 (34%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +           D+             V  ++A  KP       
Sbjct: 588 VHAALAMRELGYESIMVNCNPETVSTDFDISDRLYFEPLTLEDVLEIVAIEKPRGIIVQF 647

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ ++         P   ++      +
Sbjct: 648 GGQTPLKLASALAKAGVPIVGTTPDAIDRAEDRERFQALIQGVGLRQPPNGTVRSVEEGL 707

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
               + + P +++P        + VI  ++ +   + +    + G+ LL+++++D  IE+
Sbjct: 708 RLAKVFAYPLIVRPSYVLGGRAMKVIYSEKELTRYMTKDVIVSEGEPLLLDRFLDDAIEV 767

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  +S    P  +  +I ++++    L  + 
Sbjct: 768 DVDAICDGENVLIGGILEHIEQAG---VHSGDSSCAFPPHSLSPEIQEQLREQVRLIAKE 824

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F       +++ LE+N +   T     P +A   G    ++
Sbjct: 825 LGVVGLINTQFAI--QENEIYVLEVNPRASRT----VPFLAKATGMPLAKI 869


>gi|331700652|ref|YP_004397611.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri
           NRRL B-30929]
 gi|329127995|gb|AEB72548.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus buchneri
           NRRL B-30929]
          Length = 1021

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 96/293 (32%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62
           C  A++ AG+    I         D   S  L    L  D   N++              
Sbjct: 579 CVKAIQAAGYNAIIINNNPETVSTDFSISDKLYFEPLTIDSVMNIINLEQPIGVIVEFGG 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DS 120
                +   L    +    + +     + D+ + + ++    +               + 
Sbjct: 639 QTAINLTEGLTKHGVSILGTSLHGIEQTEDRHQFEDLLIDQNIAHPKGATATDAPEALEI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+  D  +   L+ +   +HG+ +LI+QY+ G E    
Sbjct: 699 ANHLGYPVLVRPSFVLGGKGMAVVHNDDELNEYLIPALKNSHGEPILIDQYIPGTECEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D +       +   +           +     P  +  D  +++  +A    + +  
Sbjct: 759 ILSDGNDVFVPGIMEHLEGAGIHSG---DSIAMYPPQTLTDDQKEKIVAIATKIGKQVHA 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P M+        +L   ++
Sbjct: 816 VGMMNIQFIVA---DEVYVIEVNPRASRT----VPFMSKIVKLHLAQLATQLI 861



 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L + G+ V  ++ +                      S+  ++    PD     
Sbjct: 30  GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLEPLTVPSLKKIINKEHPDAILPT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   +K +         +P   ++
Sbjct: 90  LGGQTGLNLAVELSKDGILDELGIELLGTSLQTINEAEDREKFKDLMEELHQPIPDSKTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D  H I  P +I+P       G  +   D  +   L +  + +   + L+E+ 
Sbjct: 150 YDLQDGLDFAHKIDYPVIIRPAYTLGGTGGGIAHNDDEMTTILNRGLTMSPSTECLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEFEVMRDHHGSSIIVTGMENFDPVGIHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPNSEAYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|163815179|ref|ZP_02206560.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759]
 gi|158449588|gb|EDP26583.1| hypothetical protein COPEUT_01337 [Coprococcus eutactus ATCC 27759]
          Length = 1075

 Score = 65.7 bits (158), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 107/303 (35%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV        + +  ++A  +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVKRLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +       + IL+   +      + A     D++  K+ +++ G+ +  S  
Sbjct: 89  NLGGQSGLNLCAELAKEGILDKYNVKVIGVQVDAIERGEDRIEFKKSMNAIGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADQLGYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E    +      +   I V   +       ++  +        I  D+ K +Q  
Sbjct: 209 SILGWE-ELELEVVRDCEGNMITVCFIENIDPLGVHTGDSFCSAPMLTISEDVQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+    ++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVDSVEVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 90/298 (30%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D S  L                 KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYNKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R         +P           ++  H 
Sbjct: 641 LNLASDLEKNGVKILGTSPAVIDLAEDRDLFREMMDKLEIPMPESGMATTVDEALEIAHK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESLDGYMRAAVGVTPDRPILIDRFLN---HALECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P   I  +    ++       + +   G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHITAENVATIKEYTKKIAEEMHVVG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +       KV+ LE N +   T     P ++         +   ++      R
Sbjct: 818 LMNMQYAI--EKGKVYVLEANPRASRT----VPLVSKVCNVRMVPIATDIITSELTGR 869


>gi|325980925|ref|YP_004293327.1| urea carboxylase [Nitrosomonas sp. AL212]
 gi|325530444|gb|ADZ25165.1| urea carboxylase [Nitrosomonas sp. AL212]
          Length = 1207

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 87/287 (30%), Gaps = 33/287 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN--------VLH---GNFGEDGLVQAILELLEIPYT 80
           +V  I          ++L+PD             +H   G   E+    A     +I + 
Sbjct: 47  EVYCIG---EGVAAESYLRPDKILQVAEQSGAQAIHPGYGFLSENAEFAAQCAAQQICFI 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                       K  ++ +     +P+ P    +            I  P ++K   GG 
Sbjct: 104 GPTPQQMRAFGLKHTARALAMENQIPLLPGTGLLENLDAACHQAKHIGYPVMLKSTAGGG 163

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +G+ +      +        +    +      +++        +        +  V   
Sbjct: 164 GIGMRLCWNQDELSGAYESVKTLAQNNFKDAGLFLEKYVDPARHIEVQIFGDGKGQVIAL 223

Query: 198 DFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++  +       PA      + + +   A    +A+  +     +++FD  + +
Sbjct: 224 GERDCSMQRRNQKVIEETPAPNLAPHLRQSLLDTAVRLGKAVNYQSAGTVEYIFDASTGE 283

Query: 257 VFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            ++LE+N +     G+T            G+   +L+ WMV  A+  
Sbjct: 284 FYFLEVNTRLQVEHGVTE--------EATGF---DLVEWMVRQAAGD 319


>gi|239906852|ref|YP_002953593.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus
           RS-1]
 gi|239796718|dbj|BAH75707.1| carbamoyl-phosphate synthase large chain [Desulfovibrio magneticus
           RS-1]
          Length = 1078

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGSQAAKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPGTVARIIARERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V      +L+   +    + +     +  +   +  + + G+ +  S +
Sbjct: 89  TLGGQTGLNTAVALAESGVLDEYGVDLLGASLDVIKKAESRELFRIAMDNIGLKIPQSGI 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    I  P +++P       G  V    + +        + +   ++++E+
Sbjct: 149 CHTMEDVKEWGKRIPFPIIVRPAYTLGGTGGGVAYNQEDLEKIASVGLAASMKSEIMLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEFELEVMRDKADNCVIICSIENIDPMGVHTGDSITVAPAQTLTDDEYQQMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAVNPADGEMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 85/268 (31%), Gaps = 13/268 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  +L   KP+       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVLNILEVEKPEGVIVQFGGQTPLNLAVPLLNAGVRILGTSPDSID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A + ++ ++         P   +             I  P V++P        + ++  
Sbjct: 675 RAENRERFQTLLQKLGLRQPANGTAFTVEDAATIADKIGYPVVVRPSYVLGGRAMEIVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +      +   +    +LI+++ V+  E+    + D +       +   +       
Sbjct: 735 RADLENYFKVAVVASGKHPILIDKFLVNATEVDVDAVSDGTDTYVAGVMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + KE++R      + +G  G+    F        ++ LE+N +
Sbjct: 795 ---DSACVLPPHSLDPALIKEIERQTVALAEELGVVGLMNIQFAV--KDGDIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              T     P ++   G    +L   ++
Sbjct: 850 ASRTS----PFVSKATGVPLAKLATKVI 873


>gi|224107361|ref|XP_002314458.1| predicted protein [Populus trichocarpa]
 gi|222863498|gb|EEF00629.1| predicted protein [Populus trichocarpa]
          Length = 1179

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  I         D D              V  V+A  +PD    
Sbjct: 105 SGTQACKALREEGYDVILINSNPATIMTDPDLADRTYVAPLTPEVVEQVVAKERPDAILP 164

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ + + G+   PS +
Sbjct: 165 TMGGQTALNLAVALAANGVLEKYNVELIGAKLNAIKKAEDRDLFKQAMENIGLKTPPSGI 224

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +  + +   P +I+P       G  +    +          + +   Q+L+
Sbjct: 225 GSTLEECIRISEEVIGEFPLIIRPAFTLGGSGGGIAYNKEEFEAICKAGLAASLTSQVLV 284

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G +     +     D   I     +     +      +          +  +   
Sbjct: 285 EKSLLGWKEYELEVMRDLSDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRD 344

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++
Sbjct: 345 YSIKIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKM 400

Query: 289 LLWM 292
              +
Sbjct: 401 AAKL 404


>gi|152984968|ref|YP_001350798.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa
           PA7]
 gi|150960126|gb|ABR82151.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           PA7]
          Length = 1073

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDRAMKDIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +++     
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +         +             +S  ++  + P  +P  I  E++         +
Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G  G+             +F +E+N +   T     P ++   G S  ++   
Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866


>gi|319956961|ref|YP_004168224.1| carbamoyl-phosphate synthase large subunit [Nitratifractor
           salsuginis DSM 16511]
 gi|319419365|gb|ADV46475.1| carbamoyl-phosphate synthase large subunit [Nitratifractor
           salsuginis DSM 16511]
          Length = 1089

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 87/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I+ + +                     +  ++   K D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPEFAHRTYIEPIEPEIIARIIEKEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +L+ +E    +   +         +         +P+     
Sbjct: 89  TMGGQTALNVAMEMYERGMLDGVEFLGANPEAIKKGEDRQAFKEAMQKIGMDLPISKYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+     +  G  V                 +  +++LIE+ +
Sbjct: 149 NMDEAIAAAKEIGFPLIIRASYTLAGGGSGVAYNMDEFKEIAKGGLEASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSVNPETGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+   +PD    ++H        +   L  +      +      L+ D
Sbjct: 617 FEPIDF-EHVRKVIETEEPDGV--IVHFGGQTPLKLAKNLTAIGAKIIGTPARVIDLAED 673

Query: 93  KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    +   G+      +       +   + I  P +++P        +  +  D  +
Sbjct: 674 REKFSAFIEKLGLKQPANGTAFAKEEAIAIANRIGYPVLVRPSFVLGGRAMRTVYNDAEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +LI++++D  +EL    + D         +   +           
Sbjct: 734 REYMDEAVQVSNDSPVLIDKFLDNAVELDVDAISDGKEVYIGSVMQHIEEAGIHSG---D 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++ +EV+R        +G  G+    +       +++ +E+N +   T
Sbjct: 791 SACSLPPVSVDAELLEEVKRQTMEIALGLGVVGLLNIQYAIHR--GEIYLIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 849 ----VPFVSKATGVPLAKVATR 866


>gi|302392285|ref|YP_003828105.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
 gi|302204362|gb|ADL13040.1| carbamoyl-phosphate synthase large subunit [Acetohalobium
           arabaticum DSM 5501]
          Length = 1067

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 96/310 (30%), Gaps = 35/310 (11%)

Query: 18  SGKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFN 56
           SG     AL++ G +V  +           D+   V            V+   +PD    
Sbjct: 29  SGTQACKALKEEGIEVVLVNSNPATIMTDTDIADQVYVEPITIDFVEEVIKKEEPDGILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +E+  T    +  A   D+ R+        V     
Sbjct: 89  TLGGQTGLNLAVELAEAGILEETGIELLGTSLDSIQRAEDRDRFRATMEEIGQPVAESQI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I       +    I  P +I+P       G  +    Q +   + +  + +   Q+LIE+
Sbjct: 149 IDTLAEAKEFVAEIGFPVIIRPAYTMGGAGGGIADNSQELEDIVSRGLNNSPISQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I +   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAGW-KEIEYEVLRDGADNCIVICNMENIDPVGIHTGDSIVVAPSQTLADLEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     F   P S   + +E+N  P ++  S     +   GY    +  
Sbjct: 268 SLEIIKELGIEGGCNVQFALHPDSLDYYVIEVN--PRVSRSS--ALASKATGYPIARVAA 323

Query: 291 WMVEDASCLR 300
            +   A+ LR
Sbjct: 324 KI---ATGLR 330



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/265 (13%), Positives = 82/265 (30%), Gaps = 11/265 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++    PD       G    +         +E+  T    + 
Sbjct: 608 DKLFFEPITV---EHVLNIIDREDPDGVILQFGGQTSVNLAQLLAERGVEVLGTPVKSMD 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   DK        +   P   +       +     +  P +++P        + V+ K
Sbjct: 665 LAEDRDKFTQVLDELNIDYPAGTTATSREEALAIADDLGYPLLVRPSYVLGGRAMQVVYK 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  +   +    +LI++Y+ G E+    + D +  V    +   +       +
Sbjct: 725 EEELVEYMELAVKVSPDHPVLIDRYIPGKEVEIDAIADGNNAVIPGIMEHIEKAG---VH 781

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +       +        + +   G+    F+ D    K + LE+N + 
Sbjct: 782 SGDSMAVYPPQTLTDQQIDRIVEDTIKIVKRLEMNGLVNIQFVIDKE-GKPYVLEVNPRA 840

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P ++   G    +L   
Sbjct: 841 SRT----IPILSKVTGVPMVKLATK 861


>gi|315658510|ref|ZP_07911382.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           lugdunensis M23590]
 gi|315496839|gb|EFU85162.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           lugdunensis M23590]
          Length = 1057

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLTKHGVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|289551015|ref|YP_003471919.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180547|gb|ADC87792.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           lugdunensis HKU09-01]
          Length = 1057

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +         +LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHESGVLEANNVKLLGTELKSIQQAEDRELFRTLMNDLDVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFSFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLTKHGVQILGTSLEDLNRAEDRKEFEALLRDIHVPQPKGKTATSPQEALNNARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEELDTLEDYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRAI 860


>gi|57505533|ref|ZP_00371460.1| carbamoyl-phosphate synthase, large subunit [Campylobacter
           upsaliensis RM3195]
 gi|57016080|gb|EAL52867.1| carbamoyl-phosphate synthase, large subunit [Campylobacter
           upsaliensis RM3195]
          Length = 1089

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 82/304 (26%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  +L   K D    
Sbjct: 29  SGTQAAKTLKELGYRVILINSNPATIMTDPEFADATYIEPITKESILSILKKEKVDAILP 88

Query: 57  VLHGNF--------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E    +     ++    +   +         +         +P  
Sbjct: 89  TMGGQVALNVAMEVFESEEFKKDFSFVKFLGANPEAIKKGEDRQIFKECMKKIGMDLPKS 148

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   T+ +   I  P +I+        G  V+            + S +   ++LI
Sbjct: 149 MYAYDYEETLKAVDEIGFPLMIRASYTLGGAGSGVVYNLDEFKDLATAALSLSPIHEILI 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G +     +     D   I     +     +      +          +      
Sbjct: 209 EESLLGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQAMRN 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 ASFAILREIGVDTGGSNVQFAIHPQNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKV 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATLL 328



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 83/262 (31%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      L+ D
Sbjct: 621 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 677

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +      + G+      +       +     I  P +++P        + V+  +  +
Sbjct: 678 RKKFALFCENLGINQPRNATATKVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVYDEAEL 737

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++ + +    +LI++++D   E+    + D         +   +           
Sbjct: 738 RLYMQEAVAVSERSPVLIDEFLDNATEIDVDAISDGKEVYVAGIMEHIEEAGIHSG---D 794

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I     + + +        +G +G+    F       K+F +E+N +   T
Sbjct: 795 SACSLPPCNIDEKTQELICQKTTEIALNLGVKGLLNIQFALHE--NKLFMIEVNPRASRT 852

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 853 ----VPFVSKATGVPLAKVATR 870


>gi|194014423|ref|ZP_03053040.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
 gi|194013449|gb|EDW23014.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
          Length = 1071

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M   + I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLEEAMAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSGDHAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  ++   +P+       G   
Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + DK            P   +       +   + 
Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAENRDKFEQTLEALGVPQPKGKTATSVPEAVAIANQ 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEAELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  +I  ++        + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +VF LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|157692232|ref|YP_001486694.1| carbamoyl phosphate synthase large subunit [Bacillus pumilus
           SAFR-032]
 gi|157680990|gb|ABV62134.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Bacillus pumilus SAFR-032]
          Length = 1071

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDTEMADKVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQKAEDRDLFRNLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M   + I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLEEAMAFTNQIGFPVIVRPAYTLGGTGGGICTNEQELKEIVENGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSGDHAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLAIDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  ++   +P+       G   
Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + DK            P   +       +   + 
Sbjct: 640 INLADELSNRGVKILGTSLEDLDRAENRDKFEQTLETLGVPQPKGKTATSVPEAVAIANQ 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQETELLHYMENAVKVNPQHPVLIDKYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  +I  ++        + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSEEIKAKIAEYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +VF LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|218893851|ref|YP_002442720.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa
           LESB58]
 gi|218774079|emb|CAW29895.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           LESB58]
          Length = 1073

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +++     
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +         +             +S  ++  + P  +P  I  E++         +
Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G  G+             +F +E+N +   T     P ++   G S  ++   
Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866


>gi|15599950|ref|NP_253444.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa
           PAO1]
 gi|116052903|ref|YP_793220.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|296391583|ref|ZP_06881058.1| carbamoyl phosphate synthase large subunit [Pseudomonas aeruginosa
           PAb1]
 gi|313109737|ref|ZP_07795677.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           39016]
 gi|12644249|sp|P38100|CARB_PSEAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|9951019|gb|AAG08142.1|AE004889_5 carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           PAO1]
 gi|1750387|gb|AAB39252.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           PAO1]
 gi|115588124|gb|ABJ14139.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310882179|gb|EFQ40773.1| carbamoylphosphate synthetase large subunit [Pseudomonas aeruginosa
           39016]
          Length = 1073

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +++     
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +         +             +S  ++  + P  +P  I  E++         +
Sbjct: 762 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 819

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G  G+             +F +E+N +   T     P ++   G S  ++   
Sbjct: 820 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866


>gi|107103853|ref|ZP_01367771.1| hypothetical protein PaerPA_01004924 [Pseudomonas aeruginosa PACS2]
          Length = 1055

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 11  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 70

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 71  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 130

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 131 AHSMEEAYGVLEQVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 190

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 191 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 251 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 306

Query: 291 WM 292
            +
Sbjct: 307 KL 308



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 31/293 (10%), Positives = 87/293 (29%), Gaps = 31/293 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 564 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 623

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 624 GGQTPLKLCRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 683

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +++     
Sbjct: 684 AASKAIGYPLVVRPSYVLGGRAMEIVYQEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 743

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +         +             +S  ++  + P  +P  I  E++         +
Sbjct: 744 D--IDAVCDGEIVVIGAIMQHIEQAGVHSGDSACSLPPYSLPQHIQDEIREQVKKMALEL 801

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G  G+             +F +E+N +   T     P ++   G S  ++   
Sbjct: 802 GVVGLMNVQMAVQGED--IFVIEVNPRASRT----VPFVSKCVGESLAKVAAR 848


>gi|330993912|ref|ZP_08317842.1| Carbamoyl-phosphate synthase large chain [Gluconacetobacter sp.
           SXCC-1]
 gi|329758858|gb|EGG75372.1| Carbamoyl-phosphate synthase large chain [Gluconacetobacter sp.
           SXCC-1]
          Length = 1084

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++A  KPD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEFVERIIAREKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ +   G+    S++
Sbjct: 89  TMGGQTALNTAMALDRSGFLKKHNVELIGANAEVIDRAEDRQKFREAMDEIGIESPRSLI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +   +  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEARRALETVGLPAVIRPSFTMGGSGGGIAYNREEFDRIVSSGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LACLRRIGVETGGSNVQFGINPVDGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.100,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 91/327 (27%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    ++                 G              + +  T +  + 
Sbjct: 616 RLYFEPLTAEDVIALIRREQAKGTVLGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P                 I  P V++P        + ++  
Sbjct: 676 RAEDRERFQAMLHRLGLRQPANGIARNPAEAEAVAEKIGYPVVVRPSYVLGGRAMEIVHD 735

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             S+   +  +         +G  L+     D IE     + D +       +   +   
Sbjct: 736 RASLQRYMRVALQLAGAEVANGPVLIDHYLNDAIEADVDCIADGNEVYVAGVMEHIEEAG 795

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   I  E++       + +G  G+    +        +F LE
Sbjct: 796 IHSG---DSACSLPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAIKGHD--IFVLE 850

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873


>gi|255570773|ref|XP_002526339.1| ATP binding protein, putative [Ricinus communis]
 gi|223534298|gb|EEF36010.1| ATP binding protein, putative [Ricinus communis]
          Length = 1197

 Score = 65.7 bits (158), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  I         D D              V  V+   +PD    
Sbjct: 122 SGTQACKALKEEGYDVILINSNPATIMTDPDLADRTYIAPMTPELVEQVIEKERPDALLP 181

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    +  L+   +    + + A   + D+   KQ + + G+   PS +
Sbjct: 182 TMGGQTALNLAVALAERGTLDKYNVELIGAKLDAIKKAEDRDLFKQAMKNIGLKTPPSGI 241

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   Q        P +I+P       G  +    +          + +   Q+L+E
Sbjct: 242 GTTIDECFQIANDIGEFPLIIRPAFTLGGTGGGIAYNIEEFEGICKGGLAESLTSQVLVE 301

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 302 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 361

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 362 SIKIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 417

Query: 290 LWM 292
             +
Sbjct: 418 AKL 420


>gi|218887394|ref|YP_002436715.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. 'Miyazaki F']
 gi|218758348|gb|ACL09247.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio vulgaris
           str. 'Miyazaki F']
          Length = 1078

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G  G +  +       L E      G     +   + R     +   +    P    
Sbjct: 89  TLGGQTGLNTALALAAMGVLEECGVDLIGANKQVIEKAESRELFREAMANIGLKVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    + +     +  + +   +++IEQ
Sbjct: 149 ARTMEDVRRLGTEMPFPLIIRPAFTMGGTGGGIAYNMEDLEEIAARGLAASIKHEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +         ++        
Sbjct: 209 SVLGWKEFEMEVMRDKADNCVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFGINPQNGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 87/272 (31%), Gaps = 13/272 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KPD       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVMNIIETEKPDGVVVQFGGQTPLNLAVPLMRAGVPILGTSPDSID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   +++       +   I  P V++P        + ++  
Sbjct: 675 RAEDRERFQALLQKLGLRQPANATVMSLPEARSAAARIGYPTVVRPSYVLGGRAMEIVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +      S        +LI+++++  IE+    + D +       +   +       
Sbjct: 735 EEQLAEYFANSVGEKPKHPILIDKFLESAIEVDVDALSDGTDVYVAGIMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +P  I  E+ R      + +   G+    F        ++ LE+N +
Sbjct: 795 ---DSACVIPPHTLPEAIVNEIARQTVELARELRVVGLMNIQFAV--KDGLIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              T     P ++         L   ++  A+
Sbjct: 850 ASRTA----PFVSKATAVPLPRLATQIMLGAT 877


>gi|158521457|ref|YP_001529327.1| carbamoyl phosphate synthase large subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158510283|gb|ABW67250.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 1066

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+ V  +              D+         ++  ++   +PD    
Sbjct: 29  SGTQACKALRSLGYTVVLVNSNPATIMTDPGMADITYIEPLNVATLTRIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +   +      L+   +      + A     D+   K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLSSELHQAGVLDKYGVKIIGVNVDAIKRGEDRTEFKNTMERLGIEMARSRT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P VI+P       G   +   + + +   +  + +  +Q+L+E+
Sbjct: 149 VTTVEDAEKVAEEIGYPVVIRPAYTMGGTGGGFVYNVEELRVIAARGLAASMVNQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +       T  +   I   + + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSFCTAPM-MTISPALQERLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++    AI   G +   F  DP + +V  +EIN +   T  S     +   G+    ++ 
Sbjct: 268 SYDIVDAIEVIGGTNVQFAHDPATGRVVVIEINPR---TSRSS-ALASKATGFPIA-MVS 322

Query: 291 WMV 293
            ++
Sbjct: 323 ALL 325



 Score = 39.5 bits (90), Expect = 0.69,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 75/261 (28%), Gaps = 13/261 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
               F+   +     V  + A  KPD       G    +         + I  T    + 
Sbjct: 606 NKLYFEPLTV---EDVLSIYAKEKPDGVIVQFGGQTPLNLARALEAAGVNILGTSPDTID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ R          P           ++    I  P +++P        + V+  
Sbjct: 663 LAEDRDRFRQVMQDLGIPQPESGMASTLDQALEIAARIGYPLMVRPSYVLGGRAMEVVAD 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  +   +    +LI+++++          DA  D T+  VP    +      
Sbjct: 723 EEMLRQYVTAAVDVSPDRPILIDKFLEN---AIEAEADAIADGTDAFVPAVMEHIELAGV 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP     + +              +   G+    +        V+ LE N +
Sbjct: 780 HSGDSACVLPPVSIPEKHINTIVDYTRKIAMTLKVVGLMNIQYAI--ADDCVYILEANPR 837

Query: 266 PGMTPVSIFPEMAAYAGYSFR 286
              T     P ++        
Sbjct: 838 ASRT----VPLVSKVCNIPMA 854


>gi|321315317|ref|YP_004207604.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
 gi|320021591|gb|ADV96577.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
          Length = 1071

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK            P+  +       +     
Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860


>gi|302871822|ref|YP_003840458.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
 gi|302574681|gb|ADL42472.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           obsidiansis OB47]
          Length = 1075

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 97/318 (30%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   + D    
Sbjct: 29  SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   +        +  S++   Q+L+E+
Sbjct: 149 VNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARKGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +   G     F  +P + +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDVLKIEGGCNVQFALNPENFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 89/253 (35%), Gaps = 16/253 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  V+  +K D       G       +   L    I    +      ++ D+ R  +
Sbjct: 619 KEDVLNVIETVKADGVIVQFGGQ--TAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDK 676

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++   +   P       +  ++  + +  P +++P       G+ +   D  I   L  
Sbjct: 677 ILNKLNIKRPPGFTCFALQEALEIANSLGYPVLVRPSYVLGGQGMKIAFDDNDIVEMLSY 736

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + +  +   +LI++Y+ G E+    + D    +     P    +       S +S  + P
Sbjct: 737 AKN-LNDHPILIDKYIVGKEIEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYP 791

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           A+     I   +        + + C+G+    F+    + +++ +E+N +   T     P
Sbjct: 792 ARNISKYIEDRIVEYTHKIAKELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VP 845

Query: 276 EMAAYAGYSFREL 288
            ++   G    EL
Sbjct: 846 FLSKVTGVPMVEL 858


>gi|291484104|dbj|BAI85179.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. natto BEST195]
          Length = 1071

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK            P+  +       +     
Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVLSQC--EVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860


>gi|119504337|ref|ZP_01626417.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2080]
 gi|119459845|gb|EAW40940.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2080]
          Length = 1073

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPVEWQTVARIIERERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G            + +L    +    +   A   + D+    Q +   G+      +
Sbjct: 89  TMGGQTALNCALKLAAEGVLNKYGVEMIGASKDAIDKAEDRELFDQAMKRIGLETPRAST 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P +I+P       G  +            +    +  ++LLI++
Sbjct: 149 VHSMDEAFKVLGDLGFPCIIRPSFTMGGSGGGIAYNRDEFEAICQRGFDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRKDNCIIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQVMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKVLREIGVETGGSNVQFGLCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/322 (12%), Positives = 103/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39
           + VL GG +         G+          +AL   + G++   +         D D   
Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYETIMVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++A  KP+       G              + I  T    +  A  
Sbjct: 614 RLYFEPVTLEDVLEIVALEKPEGVIVQFGGQTPLKLARALESAGVPIIGTTPDQIDRAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   ++      + +   I  P V++P        + ++ +++ +
Sbjct: 674 RERFQHMIQKLGLRQPENTTVRSVDQAIAAAAAIGYPLVVRPSYVLGGRAMEIVYREEDL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   +    +L++ ++   IE+    + D    V    +   +       +S  
Sbjct: 734 LRYMRDAVRVSEDSPVLLDSFLSAAIEVDIDAVSDGKTVVIGAIMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  D+  +++ +       +G  G+      +     +++ +E+N +   T
Sbjct: 791 SACSLPPYSLDADVQDQMRDVVRAMAIELGVCGLMNVQLAY--QDEEIYVIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G S  ++   
Sbjct: 849 ----VPFVSKAVGISLAKIASR 866


>gi|16078616|ref|NP_389435.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221309426|ref|ZP_03591273.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313751|ref|ZP_03595556.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318675|ref|ZP_03599969.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322947|ref|ZP_03604241.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|115626|sp|P25994|CARB_BACSU RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|143390|gb|AAA21270.1| carbamyl phosphate synthetase [Bacillus subtilis]
 gi|2633925|emb|CAB13426.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1071

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAEKFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK            P+  +       +     
Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVNQAVSIASD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKII 860


>gi|332526111|ref|ZP_08402249.1| carbamoyl-phosphate synthase large subunit [Rubrivivax
           benzoatilyticus JA2]
 gi|332109954|gb|EGJ10582.1| carbamoyl-phosphate synthase large subunit [Rubrivivax
           benzoatilyticus JA2]
          Length = 1081

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+M+ K  +++ G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLAKYGVEMIGANEHAIEKAEDRMKFKDAMTAIGLESAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALAVQRRIQSEIGGTGFPMVIRPSFTMGGTGGGIAYNPEEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 KELLIEESLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QLMRNASIAILREIGVDTGGSNVQFSVNPNNGRLIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 585 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 644

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T    +  A   ++ +          P   +       +
Sbjct: 645 GGQTPLKLALDLERAGVPIIGTTPDSIDIAEDRERFQKLLHELGLKQPPNRTARTEEQAL 704

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              H I  P V++P        + ++  D+ +   + ++   +    +L+++++D   + 
Sbjct: 705 ALAHEIGYPLVVRPSYVLGGRAMEIVHGDKDLERYMREAVKVSDKSPVLLDRFLD-DAVE 763

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V   A      +     +       +S  ++  + P  +   +  E++R A    +A+
Sbjct: 764 VDVDCIADATGKVLIGGIMEHVEAAGIHSGDSACSLPPYSLSPALQDEMRRQAAAMAKAL 823

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G  G+  + F          V+ LE+N +   T     P ++   G    ++   
Sbjct: 824 GVVGLMNTQFAVQGEGDDAVVYVLEVNPRASRT----VPFVSKATGRPLAKIAAR 874


>gi|84496656|ref|ZP_00995510.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649]
 gi|84383424|gb|EAP99305.1| carbamoylphosphate synthetase large chain [Janibacter sp. HTCC2649]
          Length = 1105

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIEKERPDAVLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G              +LE    P   + + A  L  D+   K VV  CG     S+ 
Sbjct: 89  TLGGQTALNCAIALHENGVLEKYNCPLIGANVEAIQLGEDRQLFKGVVERCGADSARSVI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P V++P      LG      +  +          +   ++L+E+
Sbjct: 149 AHTMDDCIAAAEELGYPMVVRPSFTMGGLGSGFAHDETELRRMAGAGLQASPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIKGWKEYELEVMRDHKDNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQRLRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +PL  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREVGVDTGGCNIQFAINPLDGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            M
Sbjct: 325 KM 326


>gi|120597833|ref|YP_962407.1| carbamoyl phosphate synthase large subunit [Shewanella sp. W3-18-1]
 gi|146294029|ref|YP_001184453.1| carbamoyl phosphate synthase large subunit [Shewanella putrefaciens
           CN-32]
 gi|120557926|gb|ABM23853.1| carbamoyl-phosphate synthase large subunit [Shewanella sp. W3-18-1]
 gi|145565719|gb|ABP76654.1| carbamoyl-phosphate synthase large subunit [Shewanella putrefaciens
           CN-32]
 gi|319427368|gb|ADV55442.1| carbamoyl-phosphate synthase, large subunit [Shewanella
           putrefaciens 200]
          Length = 1074

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L    +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLAEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHSMEEAYGVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P+  ++  +E+N  P ++  S            ++AA  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPIDGRMVIIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  EL+  +
Sbjct: 327 AVGFTLDELMNDI 339



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDQQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  +I   ++         +G  G
Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDRMRVQVGKLAMELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|295703118|ref|YP_003596193.1| urea carboxylase [Bacillus megaterium DSM 319]
 gi|294800777|gb|ADF37843.1| urea carboxylase [Bacillus megaterium DSM 319]
          Length = 1203

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 96/276 (34%), Gaps = 27/276 (9%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           V +  ++  + L +A      A +  +G   E+       +   I +         +   
Sbjct: 56  VKESYLNEDLILDIAKKTGAEAIHPGYGFLSENAEFARRCQAEGIVFIGPTPQQMEIFGL 115

Query: 93  KMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           K  ++++     VP+ P    I      + +   I  P ++K   GG  +G+ V + +++
Sbjct: 116 KHSAREIAQKADVPLLPGTPLITDVSEAVCAAEEIGYPVMLKSTAGGGGIGMRVCQDEKA 175

Query: 150 IPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +              + +    L +       +   + G++  +V  +            
Sbjct: 176 LQAAFDSVCHLAQTNFKNSGVFLEKYIQKARHVEVQIFGNSFGEVVALGERDCSIQRRNQ 235

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
           K    +     P+     I + + + A    + +G R     +FL+D  + K ++LE+N 
Sbjct: 236 KVIEESPAPNFPSY----IRENMLQAATRLAKEVGYRSAGTVEFLYDAEAEKFYFLEVNT 291

Query: 265 QPGMTPVSIFPEMAAYAGYSFR----ELLLWMVEDA 296
                       +    G +      +L+ WM+++A
Sbjct: 292 -----------RLQVEHGVTEEVLNVDLVEWMLKEA 316


>gi|160903135|ref|YP_001568716.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis
           SJ95]
 gi|160360779|gb|ABX32393.1| carbamoyl-phosphate synthase, large subunit [Petrotoga mobilis
           SJ95]
          Length = 1496

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G KV  ++ +                      ++  ++   KPD    
Sbjct: 29  SGTQACKSLKEEGCKVILVNNNPATIMTDTEIADVVYMENLEMDTLISIIEKEKPDGILG 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G    + ++Q      ++  +I    + + +  ++  +   + K       +    +
Sbjct: 89  TLGGQTALNLIIQLKDSGIIDKYDIQELGTSVESIKIAESRELFKRKMQEIEEPIAESLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + +  P +I+P       G      ++ +   +      +   ++LIE+
Sbjct: 149 VSTVSEAINFANKVGYPLIIRPAYTLGGTGGGFAYNEEELIEFVENGLKKSMMKEVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    ++ ++  
Sbjct: 209 SLLGW-KEIEYELVRDSFDNCITVCNMENFDPVGIHTGDSIVVAPSQTLTDQEHQMLRDS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  +P + +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIKIIKALKIEGACNIQFALNPYNEEYRVIEVN--PRLSRSS--ALASKATGYPIAKIAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 104/323 (32%), Gaps = 48/323 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + V+ GG        +  G+             AL++   K   I         D D   
Sbjct: 555 VIVIGGGP-------IRIGQGVEFDYCTVKALWALKEKCIKSIIINNNPETVSTDFDTGD 607

Query: 43  GLVLAHLKPDLAFNVLH----------GNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
            L    L  +   N++                   +   LE   I    +      L  D
Sbjct: 608 RLYFEPLTQEDVLNIIEKEDPMGTMVMFGGQTALNLGEELERHGIKILGTSYEHIDLCED 667

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + R   ++    +       +       +    +  P +++P        I  +  +  +
Sbjct: 668 RKRFSLLLKELEINQPRGGYVTSFDEAREIAKRLGFPLLVRPSYVIGGQSIEKVNSEDEL 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L  +   +    +LI++Y++G+E+    + D    +     P    +  +    S +
Sbjct: 728 FEYLSHALDLSPNRPVLIDEYIEGVEVEVDAVSDGENVLI----PGIMEHIEKAGIHSGD 783

Query: 211 STHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  V PAK   ++ ++   R      +A+  +G+    F+      KV+ +E+N +   T
Sbjct: 784 SFAVFPAKTLSELEEKEIVRYVEKISKAVKVKGLINIQFIV--KEGKVYVIEVNPRASRT 841

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
                P ++   G    +L + +
Sbjct: 842 ----VPIISKVTGIPMIKLAVEI 860


>gi|116751328|ref|YP_848015.1| carbamoyl phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116700392|gb|ABK19580.1| carbamoyl-phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1066

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 104/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL   G+                    V+ I+     SV  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYSILLVNSNPATIMTDPGMADVTYIEPLTFESVKKIIEKERPDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G     +   + +L+   +        A     D++  K+ ++   + +  S  
Sbjct: 89  NLGGQTGLNLTAELHRKGVLDACGVKIIGVQADAIERGEDRIAFKETMNRLNIEMPRSEP 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +   +    +  P VI+P       G  ++   + +     +  S +   Q+L+E+
Sbjct: 149 ALSVKEAEEIAARLGYPVVIRPAYTLGGTGGGLVYNVEELRTIAGRGISASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +       T  +   I   + +++Q+ 
Sbjct: 209 SVLGWEELELEVVRDAKNRRITVCFIENVDAMGIHTGDSFCTAPM-LTISPALQEKLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+    ++ 
Sbjct: 268 SYDIVEAIEVIGGTNIQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA-MIS 322

Query: 291 WMV 293
            M+
Sbjct: 323 SML 325



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 84/267 (31%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP+       G    +   +   E + I  T    + 
Sbjct: 606 DKLYFEPVTV---EDVLSIYEKEKPEGVIVQFGGQTPLNIARELCDEGVNILGTTVDTID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ R         +P           ++    I  P +++P       G+ ++  
Sbjct: 663 LAEDRDRFRGMMKKLGIPMPESGMASTLEEALEVARKIGYPLMVRPSYVLGGRGMEIVHD 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  ++       +LI+++++          DA  D T+  VP    +      
Sbjct: 723 EEMLERYVAAATGVTPDRPILIDKFLEN---AIEAEADAISDGTDAFVPAVMEHIELAGI 779

Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S   + P  IP    + +          +   G+    +     +  V+ LE N +
Sbjct: 780 HSGDSACVIPPISIPPRHLETIYEYTRKIAVELNVVGLMNIQYAIARDT--VYVLEANPR 837

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++         +  W+
Sbjct: 838 ASRT----VPLVSKVCNIPMARMATWI 860


>gi|332295571|ref|YP_004437494.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfobium
           narugense DSM 14796]
 gi|332178674|gb|AEE14363.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfobium
           narugense DSM 14796]
          Length = 1076

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 90/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQAIKALKQEGYEVVLVNSNPATIMTDPEMADHTYIEPITPQVVTKVIKKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      ILE   +        A     D++  ++ +   GV +  S +
Sbjct: 89  TLGGQTALNVAVNLAEAGILEKYNVEMLGVNTDAIKKGEDRLLFRETMKEIGVDLPKSGI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +      +   +      +   Q+LIE+
Sbjct: 149 AHSLNEAEKIAFELGFPLIIRPSFTLGGTGGGIAYNFDDLRYHVSNGLDLSMIHQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V   +     +     D   I     +F    +      +   +      +        
Sbjct: 209 SVLNWKEFELEVMRDKKDNVVIICSIENFDPMGIHTGDSITVAPIQTLTDKEYQVLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IKVIRKIGVDTGGSNIQFAMNPKDGRIVIIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 38.7 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 63/174 (36%), Gaps = 13/174 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + ++  D  +   + ++   +    +LI+++  D IE+  
Sbjct: 706 ARSLGYPVLVRPSYVLGGRAMEIVYDDNDLMEYIKKAVEVSEAKPVLIDRFLEDAIEIDV 765

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D         +   +    E    S +S  VLP      +   E+ R+       +
Sbjct: 766 DALCDGDEVFIGGIMEHIE----EAGIHSGDSACVLPTFSLTKEELTELSRITREIALKL 821

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G +G+    +       K++ LE+N +   T     P ++   G    +L   +
Sbjct: 822 GVKGLINIQYAIR---DKIYVLEVNPRASRT----VPFVSKTIGIPLAKLATQI 868


>gi|227523552|ref|ZP_03953601.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus
           hilgardii ATCC 8290]
 gi|227089317|gb|EEI24629.1| carbamoyl-phosphate synthase, glutamine-hydrolyzing [Lactobacillus
           hilgardii ATCC 8290]
          Length = 1021

 Score = 65.7 bits (158), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L + G+ V  ++ +                      S+  +L    PD     
Sbjct: 30  GSQACLSLREEGYSVILVNSNPATIMTDDEIADKVYLDPLTVPSLKKILEKKHPDAILPT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   ++ +         +P   ++
Sbjct: 90  LGGQTGLNLAVELAKDGILDKLGIELLGTSLHTINQAEDREQFKDLMKELHQPIPDSKTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  H I  P +I+P       G  +   D  +   L +  + +   + LIE+ 
Sbjct: 150 YNLEDGLDFAHEIDYPVIIRPAYTLGGTGGGIAHNDDEMKTILNRGLTMSPSTECLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               + I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEFEVMRDHHGSSIIVTGMENFDPVGVHTGDSIVFAPTQTLTDKEYQRLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIVNALKIEGGCNVQLAQDPTSENYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL----------HGNF 62
           C  A++ AG     I         D   S  L    L  D   NV+              
Sbjct: 579 CVKAIQAAGKNAIIINNNPETVSTDFSISDKLYFEPLDIDSVMNVINLEKPMGVIVEFGG 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120
                +   L    +    + +     + ++   + ++    +        +        
Sbjct: 639 QTAINLTEELTKHGVQILGTSMHGIEETENRHDFEDLLIDQNIAHPQGDTAMNGHEAHAI 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ V+   + +   L+ +   + G  +LI+QY+ G E    
Sbjct: 699 ANKLGYPVLVRPSFVLGGKGMAVVHNGEELDEYLVPALKASAGQPILIDQYISGTECEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D         +   +           +     P  +  +  +++  +A    + +  
Sbjct: 759 ILSDGKDVFVPGIMEHLEGSGIHSG---DSIAMYPPQHLTDEQKEKIVSIATKIGKKVHA 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P M+        +L   ++
Sbjct: 816 VGMMNIQFICA---NDVYVIEVNPRASRT----VPFMSKITKMHLAQLATQLI 861


>gi|3820584|gb|AAC70356.1| carbamoylphosphate synthetase large subunit [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 1092

 Score = 65.3 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 89/301 (29%), Gaps = 30/301 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-I 111
            + G    +          LE        +   A   + D+++ +Q +   G+    S +
Sbjct: 89  TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +            P +I+P       G  V    +     +    S +   ++LIE+ 
Sbjct: 149 AHSLEEALDGLDYVLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEES 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D   I     +     +      +          +         
Sbjct: 209 VIGWKEYEMEVVRDRHDNCIIICSIENIDPMGVHTGDSITVAPALTMTDKEYQIMRNASI 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++   
Sbjct: 269 AVLREIGVETGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 L 325



 Score = 42.2 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59
           ALE AG++   +         D D S  L    L  +    +LH                
Sbjct: 618 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 677

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G        +     + I  T    +  A   ++  +         P           + 
Sbjct: 678 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 737

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +I+P        + +I     +   +  +   +    +LI+QY+   + T 
Sbjct: 738 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 795

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +   +     +             +S  ++  + P  +P  I +E++       +A+ 
Sbjct: 796 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 855

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    F       KV+ +E+N +   T     P +A   G    ++   
Sbjct: 856 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 901


>gi|71406882|ref|XP_805945.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70869544|gb|EAN84094.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 789

 Score = 65.3 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 88/262 (33%), Gaps = 21/262 (8%)

Query: 27  EDAGFKVSQIDVDRS-----VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   +  +++ + +S     V  ++     D+ FN+  G   E      ++E LE     
Sbjct: 265 DKKRYTFTEVSLRKSESYLRVRELVTSNNFDVFFNLCDGGKDEKRAGVEVVEALEEHNAA 324

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSS 138
                S          +++        P+ ++   T         +  P ++K L G +S
Sbjct: 325 FTGTDSHSFEPSKIDMKLLVGAAGVNTPNFVLLESTEGLAKKCRHLRFPVIVKHLSGYAS 384

Query: 139 LGIIVIKKDQSIPL-DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA--------SLDV 189
           +GI    +  ++    +   +     +  L+E+++ G E T     D            +
Sbjct: 385 VGIHKDNRCDTLDELKVKVRAFLAEFNHALVEEFIRGREGTVLACADRGSLFGVKVFKPL 444

Query: 190 TEIAVPKSDFYSYELKYSSLNST---HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               +   D ++Y  K  ++      +           + +          +   G  R 
Sbjct: 445 MFKFLQNDDDFAYFEKKWTMECNENAYSFLPHNDPAYPQIIDTARNAFRHIMNGVGYGRV 504

Query: 247 DFLFDPLSRKVFWLEINVQPGM 268
           DF  DP    V++LEIN   GM
Sbjct: 505 DFRIDPK-GDVYFLEINPNCGM 525


>gi|89098074|ref|ZP_01170960.1| carbamoyl-phosphate synthase(arginine-specific) large chain
           [Bacillus sp. NRRL B-14911]
 gi|89087237|gb|EAR66352.1| carbamoyl-phosphate synthase(arginine-specific) large chain
           [Bacillus sp. NRRL B-14911]
          Length = 1043

 Score = 65.3 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 46/310 (14%), Positives = 94/310 (30%), Gaps = 41/310 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                      S+  ++   +PD     
Sbjct: 36  GTQACMALKEEGYKVILVNNNPATIMTDHSYADTIYFEPLTVDSLEKIIMKERPDGLLAS 95

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    +++  +    +      ++ R         VP    +
Sbjct: 96  LGGQTGLNLAMALSETGVLEKYKVKMLGSPIASIKKGEDREEFRQLMKELDEPVPDSEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +           P +++P       G  +    +   L +      +   Q L+E+ 
Sbjct: 156 REAKEAKRFAEASGFPIIVRPAYTLGGSGGGIAHSMEEFMLLVEGGLLESPISQCLVEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             D T I +   +       ++  +        +  + Y+ ++  +
Sbjct: 216 IAG-YKEIEYEVMRDKDNTCITICNMENIDPVGVHTGDSIVIAPSQTLTDEEYQMLRSAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA-Y 280
                A+G  G     F  DP S+K + +E+N  P ++  S        +P     A   
Sbjct: 275 IKIISALGIIGGCNIQFALDPESKKYYLIEVN--PRVSRSSALASKATGYPIARMAAKLA 332

Query: 281 AGYSFRELLL 290
            GYS  ELL 
Sbjct: 333 VGYSLSELLN 342



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 6/67 (8%)

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +        + +  +G+    ++ D    +V+ LE+N +   T     P ++  A     
Sbjct: 806 MFEYGKKIVKDLAYKGLMNIQYIVD--GEEVYLLEVNPRASRT----VPVVSKVANVPLV 859

Query: 287 ELLLWMV 293
           ++   ++
Sbjct: 860 QIATKIL 866


>gi|94986169|ref|YP_605533.1| carbamoyl phosphate synthase large subunit [Deinococcus
           geothermalis DSM 11300]
 gi|167006439|sp|Q1IWM0|CARB_DEIGD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|94556450|gb|ABF46364.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           geothermalis DSM 11300]
          Length = 1029

 Score = 65.3 bits (157), Expect = 9e-09,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  +         D D              V  V+   +PD    
Sbjct: 29  SGTQALKALKKEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVRKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++      L+   +    +   A     D+   +  +   GV      +
Sbjct: 89  TLGGQTALNLAMELNANGTLKEFGVELIGANAEAIHKGEDREAFQAAMKKIGVETARGKM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     ++ Q  I  P VI+P       G  +    +            +    +L+E+
Sbjct: 149 VHSLEEAIEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEDFLKITEGGLRDSPVHSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +         ++  +     
Sbjct: 209 SILGWKEYELEVMRDHADTVVIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAIIREIGVDTGGSNIQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|295091307|emb|CBK77414.1| carbamoyl-phosphate synthase large subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 1088

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 30/288 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C   L+  G++V  ++                         V  +L   KP        G
Sbjct: 577 CVQVLKGLGYEVVIVNNNPETVSTDFDTADRLYFEPLTTEDVKNILQAEKPCGVVVAFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + +  T +  +  A   ++            P   +++     + +
Sbjct: 637 QTAIRLTRHLAENGVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        +I+   +  I   +    + N  + +LI++Y++G E+   
Sbjct: 697 AESVGYPVLMRPSYVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +           +        +  +  +++        + +  
Sbjct: 757 AIYDGTDILLPGIMEHVERSGIHSG---DSIAIYPAMHLTPETEEKIAETTKKLCEGLNA 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            GI    ++      +++ +E+N +   T     P ++   G    +L
Sbjct: 814 VGIVNVQYIV--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL +   ++  ++ +                      +V  ++   KPD   + 
Sbjct: 30  GAQACRALREEELEIVLVNSNPATIMTDHMMADRIYIEPLTLETVKRIIEKEKPDSILSG 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      LE   +    S       + D+   K  + S G P  PS  +
Sbjct: 90  LGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQLFKDAMESIGQPCVPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +        + +   Q+L+E+ 
Sbjct: 150 NETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREIARNGLALSPIHQILVEKG 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +F    +                 + Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDRAGNCITVCSMENFDPVGIHTGDSIVIAPAVTLADRE-YQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIVDTLQVEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|314933378|ref|ZP_07840743.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae
           C87]
 gi|313653528|gb|EFS17285.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus caprae
           C87]
          Length = 1057

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      L    +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEIVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 91/285 (31%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQDAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQEEIDTLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F+       V+ LE+N +   T     P ++        +L
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQL 855


>gi|258616259|ref|ZP_05714029.1| carbamoyl phosphate synthase large subunit [Enterococcus faecium
           DO]
          Length = 513

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|257889570|ref|ZP_05669223.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410]
 gi|257825930|gb|EEV52556.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,410]
          Length = 1061

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETILIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|257884645|ref|ZP_05664298.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501]
 gi|257820483|gb|EEV47631.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,501]
          Length = 1061

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|69247604|ref|ZP_00604415.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Enterococcus faecium DO]
 gi|257878232|ref|ZP_05657885.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933]
 gi|257880988|ref|ZP_05660641.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502]
 gi|257892490|ref|ZP_05672143.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408]
 gi|260559782|ref|ZP_05831961.1| carbamoyl-phosphate synthase [Enterococcus faecium C68]
 gi|293559354|ref|ZP_06675896.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1162]
 gi|293569852|ref|ZP_06680939.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1071]
 gi|294621724|ref|ZP_06700888.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           U0317]
 gi|314939735|ref|ZP_07846957.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a04]
 gi|314941764|ref|ZP_07848641.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133C]
 gi|314948309|ref|ZP_07851701.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0082]
 gi|314952397|ref|ZP_07855404.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133A]
 gi|314991984|ref|ZP_07857437.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133B]
 gi|314995718|ref|ZP_07860808.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a01]
 gi|68194772|gb|EAN09250.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Enterococcus faecium DO]
 gi|257812460|gb|EEV41218.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,230,933]
 gi|257816646|gb|EEV43974.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,502]
 gi|257828869|gb|EEV55476.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,231,408]
 gi|260074006|gb|EEW62329.1| carbamoyl-phosphate synthase [Enterococcus faecium C68]
 gi|291587600|gb|EFF19477.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1071]
 gi|291598733|gb|EFF29786.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           U0317]
 gi|291606718|gb|EFF36110.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1162]
 gi|313590109|gb|EFR68954.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a01]
 gi|313593419|gb|EFR72264.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133B]
 gi|313595514|gb|EFR74359.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133A]
 gi|313599442|gb|EFR78285.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133C]
 gi|313640964|gb|EFS05544.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0133a04]
 gi|313645290|gb|EFS09870.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           TX0082]
          Length = 1061

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|294507128|ref|YP_003571186.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
 gi|294343456|emb|CBH24234.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber M8]
          Length = 333

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 108/289 (37%), Gaps = 18/289 (6%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAIL 72
           + +    A+A+E  G    ++     +   L   L  D A N+  G    +    V  +L
Sbjct: 30  IETVDTLAAAVEHLGHTPVRVGTAADLRDRLGGGLSLDAAINITEGAHSRNREAYVPILL 89

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVI 130
           E+  +P   S  L  ++++DK  +K +V++  +P  P  + +         +    P  +
Sbjct: 90  EMAGVPCLGSDALTLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFV 149

Query: 131 KPLKGGSSLGII---VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
           KP   G+S GI     ++   ++   + + ++    D +       G E T  V+G    
Sbjct: 150 KPRYEGTSKGITPDSKVEDVAALRGAVDRITTTYDQDAVAEPFVAGGGEFTVAVVGHDPP 209

Query: 188 DVTEIAVPKSDFY---------SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +   +     +                 +  +  + L   +   +   +Q L+  A   +
Sbjct: 210 EALPVLQRGVEPTTGLGLHVLEHRGAPTADRDWEYELRGTLAPALEDRLQALSRRAFDTL 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            CR  +R+DF  D      ++LEIN  P   P   F  +A   G  + +
Sbjct: 270 DCRDFARADFRVDG-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVD 317


>gi|323489517|ref|ZP_08094744.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Planococcus donghaensis MPA1U2]
 gi|323396648|gb|EGA89467.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Planococcus donghaensis MPA1U2]
          Length = 1062

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  I+ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYRVILINSNPATIMTDTEVADKVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNMAIELDESGILDELNIEILGTKLEAIHKAEDRDLFRTLMNELGEPVPDSDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    +  P +++P       G  +    + +   +     ++   Q L+E+ 
Sbjct: 150 HNMTEAENFVDRVGYPVIVRPAFTLGGTGGGICHDYEQLKEIVASGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDKNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPFSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 93/280 (33%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIVDLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T       A + +K  +         P+  + +     +     
Sbjct: 640 INLAEKLEQNGVKILGTSLEDTDRAENRNKFEAALHEIGIPQPLGKTAVNTEEAIIIAGD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   +    +L+++Y+ GIE+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNEEDLKHYMEHAVEASPEHPVLVDRYLTGIEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P   I  ++ + +        + +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPTQNISNELLETLVDYTTRLAKGLNIVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++      +VF +E+N       P M+ ++  P  
Sbjct: 816 LLNIQYVI--SKGEVFVIEVNPRSSRTVPFMSKITSIPMA 853


>gi|186475639|ref|YP_001857109.1| carbamoyl phosphate synthase large subunit [Burkholderia phymatum
           STM815]
 gi|184192098|gb|ACC70063.1| carbamoyl-phosphate synthase, large subunit [Burkholderia phymatum
           STM815]
          Length = 1084

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTAEVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +L    +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  ++ V+            P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEAMHVHAEIAAFTGGSGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLDLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGDTVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSNETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVIGLMNVQFAIQQVPQADGTKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|325525888|gb|EGD03599.1| carbamoyl phosphate synthase large subunit [Burkholderia sp. TJI49]
          Length = 1084

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +LE   +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  +  V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|296116671|ref|ZP_06835281.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           hansenii ATCC 23769]
 gi|295976883|gb|EFG83651.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           hansenii ATCC 23769]
          Length = 1085

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++A  KPD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEFVERIIAREKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ + + G+    S++
Sbjct: 89  TMGGQTALNTAMALDKSGFLKTHNVELIGANAEVIDRAEDRQKFREAMDAIGIESPRSVI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLAEAREALKQVGLPSVIRPSFTMGGSGGGIAYNREEFDRIVTSGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LACLRKIGVETGGSNVQFGINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 43/327 (13%), Positives = 90/327 (27%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 564 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 616

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    ++                 G           +  + +  T +  + 
Sbjct: 617 RLYFEPLTAEDVIALIRREQENGTVLGCIVQYGGQTPLKLSHALEMAGIALLGTPADAID 676

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P            D    I  P V++P        + ++  
Sbjct: 677 RAEDRERFQAMLHKVGLRQPENGIARSPTEAEDVADRIGYPVVVRPSYVLGGRAMEIVHD 736

Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             S+   +  +      D             D IE     + D +       +   +   
Sbjct: 737 RASLQRYMRVALQLAGHDVASGPVLIDRYLNDAIEADVDCIADGTDVYVAGVMEHIEEAG 796

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   I  E++       + +G  G+    +        +F LE
Sbjct: 797 IHSG---DSACSLPPYTLSPAIVTELKAQTEAMARELGIVGLMNVQYAIKGHD--IFVLE 851

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 852 VNPRASRT----VPFVAKATGVPVAKI 874


>gi|90020774|ref|YP_526601.1| putative allophanate hydrolase [Saccharophagus degradans 2-40]
 gi|89950374|gb|ABD80389.1| Allophanate hydrolase subunit 2 [Saccharophagus degradans 2-40]
          Length = 1209

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 58/183 (31%), Gaps = 16/183 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG  +G+ V   +  +          +         +++      
Sbjct: 146 WAKEVGYPIMLKSTAGGGGIGMQVCHSESQLQQAWDSVKRLSANYFSNDGVFLEKYIADA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +                      +  +       PA    + +  ++   A     ++
Sbjct: 206 RHIEVQIFGDGAGTAVAFGERDCSAQRRNQKVIEETPAPKLSEAVRADLCATAQRLMASV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             R     +F+FD    K ++LE+N +     G+T      ++    G    +L+ WM++
Sbjct: 266 NYRNAGTVEFIFDAKENKFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVEWMIK 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|266624707|ref|ZP_06117642.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
 gi|288863423|gb|EFC95721.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
          Length = 1075

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 101/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G        +     ILE   +      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELNKAGILEKYNVKVIGVQVDAIERGEDRVEFKKAMNELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALKIADQLGYPVVLRPAYTMGGAGGGLVYNRDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E    +      +   I V   +       ++  +        I  +  K +Q  
Sbjct: 209 SILGWE-ELELEIVRDSEGRMITVCFIENIDPLGVHTGDSFCSAPMLTISPECQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    +P        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEQPAGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R+        +P     +     +     
Sbjct: 641 LNLAADLEKNGVKILGTPPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAIAAK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMIGYMKAAVGVTPDRPILIDRFLN---HAMECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P  +I  +  + ++       + +   G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVQISPENVETIKEYTRKIAEEMHVVG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     + +V+ LE N +   T     P ++         L   ++
Sbjct: 818 LMNMQYAI--ENDRVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862


>gi|172060236|ref|YP_001807888.1| carbamoyl phosphate synthase large subunit [Burkholderia ambifaria
           MC40-6]
 gi|171992753|gb|ACB63672.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria
           MC40-6]
          Length = 1084

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +LE   +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  +  V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|120611279|ref|YP_970957.1| carbamoyl-phosphate synthase large subunit [Acidovorax citrulli
           AAC00-1]
 gi|120589743|gb|ABM33183.1| carbamoyl-phosphate synthase large subunit [Acidovorax citrulli
           AAC00-1]
          Length = 1056

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%)

Query: 21  ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59
               AL + G+KV  I              DV        ++V  ++A  +PD     + 
Sbjct: 2   QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61

Query: 60  GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113
           G        D     +L   ++    +   A   + D+++ K  ++  G+    S     
Sbjct: 62  GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  Q  +  P VI+P       G  +    +       +    +  ++LLIE+ + 
Sbjct: 122 MDEAWAVQRSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G +     +     D   I     +     +      +          +          +
Sbjct: 182 GWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/299 (10%), Positives = 92/299 (30%), Gaps = 34/299 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPTGVIVQY 613

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ +          P   +       +
Sbjct: 614 GGQTPLKLALGLEAEGVPIIGTSPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEAEAL 673

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 674 EKAATLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAIE 732

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +         +       +S  ++  + P  +      E++R      + +
Sbjct: 733 CDVDCLRDPEGKVFIGGVMEHIEQAGVHSGDSACSLPPYYLSKATVDELKRQTAAMAEGL 792

Query: 239 GCRGISRSDFLFDPLSRK------VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F              ++ LE+N +   T     P ++   G    ++   
Sbjct: 793 NVVGLMNVQFAIQEREENGARQDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 847


>gi|325288860|ref|YP_004265041.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964261|gb|ADY55040.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1062

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 84/297 (28%), Gaps = 31/297 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  A   AL  AG +   I         D D              V  VL   KP+    
Sbjct: 573 SVHAV-KALRKAGVESIIINNNPETVSTDFDTSDRLYFEPLTLEDVSEVLNKEKPEGVIV 631

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G                I  T       A                 P    +     
Sbjct: 632 QFGGQTAIGLCKGLAARGYRILGTTVEDTDRAEERGIFDHVLQELGAKRPQGGCVSTVEE 691

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P        + ++     I   +  + +   G Q+ ++QY++G E
Sbjct: 692 AEKLSEKIGFPLIVRPSYVLGGRAMQIVYDRADIKRIVQNAFAEFPGQQIWMDQYLEGKE 751

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D         +   +       +S  +     P  +   +   +  L     +
Sbjct: 752 VEVDAISDGETVCIPGIMEHLERAG---VHSGDSIAVYPPQTLAQKMENRISDLTVSIAR 808

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           ++  +G+    ++      +V+ LE+N +   T     P ++   G    +L   ++
Sbjct: 809 SLRIKGLLNIQYVI--YKDEVYVLEVNPRSSRT----VPFLSKVTGVPVVDLATRVI 859



 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +   ++ +                       +  ++   KPD     
Sbjct: 29  GTQACRALREEGLETVLVNSNPATIMTDAEVADKIYIEPLTIEFLERIIEKEKPDGLLPT 88

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           + G  G +   Q     IL+   +    + + + + + D+   +         +P    +
Sbjct: 89  MGGQTGLNLAFQLSQSGILQRCGVTLLGTPLDSISKAEDREHFRNLMHEIRQPIPESTIV 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    +++        + +   Q+LIE+ 
Sbjct: 149 SEVGEAVAFAEEIGYPLIVRPAFTLGGTGGGIAGDRKTLEEIAASGINASMIGQILIERS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G               + IAV   +       ++  +        +     + ++  +
Sbjct: 209 VAGW-KEIEFEVLRDGMDSCIAVCHMENMDPVGVHTGDSIVVAPCQTLTDKEIQMLRTAS 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           F    A+G  G     F  +P++ + + +E+N  P ++  S     +   GY   ++   
Sbjct: 268 FNIVSALGIEGGCNVQFALNPVNDEYYVIEVN--PRLSRSS--ALASKATGYPIAKIAAK 323

Query: 292 M 292
           +
Sbjct: 324 I 324


>gi|153940513|ref|YP_001391099.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum F
           str. Langeland]
 gi|167006438|sp|A7GE89|CARB_CLOBL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|152936409|gb|ABS41907.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           F str. Langeland]
 gi|295319142|gb|ADF99519.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           F str. 230613]
          Length = 1068

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KPD       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +    DI +++          IG
Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 106/318 (33%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  I+ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+      L+   +    + I +     D+   + V+S    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D  + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTDMEDGKDFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     +IG +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323

Query: 291 WM--------VEDASCLR 300
            +        +++A   +
Sbjct: 324 KIALGYTLDEIKNAVTEK 341


>gi|121594731|ref|YP_986627.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42]
 gi|120606811|gb|ABM42551.1| carbamoyl-phosphate synthase large subunit [Acidovorax sp. JS42]
          Length = 1053

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 91/299 (30%), Gaps = 31/299 (10%)

Query: 21  ACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFNVLH 59
               AL + G+KV  I              DV        ++V  ++A  +PD     + 
Sbjct: 2   QACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILPTMG 61

Query: 60  GN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILV 113
           G        D     +L   ++    +   A   + D+++ K  ++  G+    S     
Sbjct: 62  GQTALNCALDLWRNGVLHKYKVELIGATPEAIDKAEDRLKFKDAMTRIGLGSARSGIAHS 121

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                  Q  +  P VI+P       G  +    +       +    +  ++LLIE+ + 
Sbjct: 122 MDEAWAVQKNVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEESLL 181

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G +     +     D   I     +     +      +          +          +
Sbjct: 182 GWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASLAV 241

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 242 LREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 296



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 90/295 (30%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP+      
Sbjct: 554 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPEGVIVQY 613

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 614 GGQTPLKLALGLEAAGVPIIGTTPDMIDAAEDRERFQKLLGDLGLRQPPNATARTEPEAL 673

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L+++++    + 
Sbjct: 674 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLSN-AIE 732

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V                +       +S  ++  + P  +  +   E++R        +
Sbjct: 733 CDVDCVRDASGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKAETVAEIKRQTTAMAHGL 792

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F          ++ LE+N +   T     P ++   G    ++   
Sbjct: 793 NVVGLMNVQFAIQETDDGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 843


>gi|295398280|ref|ZP_06808322.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
 gi|294973419|gb|EFG49204.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
          Length = 1064

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P+       G  
Sbjct: 579 KAIQQAGYEAIIMNNNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPEGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   + +     +    
Sbjct: 639 AINLAEPLHALGIPILGTTVEDLDRAEDRDLFEQALTDLGIPQPEGFTAMSVEDALQIPS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ ++  D  +   +  +   +    +LI+ YV G E+    +
Sbjct: 699 KIGYPVLVRPSYVLGGRGMEIVDNDADLRSYMEDAMIASPDRPILIDHYVVGTEVEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +        +  ++   +          + C G
Sbjct: 759 CDGENVLIPGIMEHIERSG---VHSGDSMAVYPSQSLSDEVKATIVDYTERLSFGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFIV--QDGQVYVIEVNPRASRT----VPFLSKVTGIPMAQVATRAI 860



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLSLREEGYEVVLVNSNPATIMTDTEIADKVYIEPITLEFVSRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++   + +      ++  T    +  A   D  R+     +  VP    +
Sbjct: 90  LGGQTGLNMAIELANDGILDELGIQLLGTKLSAIDQAEDRDLFRNLMRELNEPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P +++P       G  +      +   + +    +  +Q LIE  
Sbjct: 150 HTVDEALAFAEQAGYPVIVRPAFTMGGTGGGICNDPAELREIVAKGLKLSPVNQCLIEIS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGYKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTLTLTDYE-NQILRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPNSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|293553493|ref|ZP_06674121.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1039]
 gi|291602370|gb|EFF32594.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1039]
          Length = 1061

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKKVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|255030676|ref|ZP_05302627.1| D-alanyl-alanine synthetase A [Listeria monocytogenes LO28]
          Length = 124

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3  VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA 54
          +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D  
Sbjct: 7  LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61


>gi|254994415|ref|ZP_05276605.1| D-alanyl-alanine synthetase A [Listeria monocytogenes FSL J2-064]
          Length = 64

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 3/55 (5%)

Query: 3  VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV---LAHLKPDLA 54
          +L GG S+E EVSL +  +  +AL+   F+ + I +      +   L   K D  
Sbjct: 7  LLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITNEGEWIQGPLLSGKLDFV 61


>gi|288553133|ref|YP_003425068.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
 gi|288544293|gb|ADC48176.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
          Length = 1089

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  I+ +                       V  ++   +P      
Sbjct: 30  GTQACQALKEEGYEVILINSNPATIMTDTTMADRVYIEPITLEFVSRIIRQERPCGIVAT 89

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   ++ R+     +  VP    +
Sbjct: 90  LGGQTGLNMAMELDESGILDAYNIELLGTDLKAIKQAEDREQFRALMNELNEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  ++  D+ +   +     ++   Q L+E+ 
Sbjct: 150 HTVEEAQVFVRKIGYPIIVRPAYTLGGTGGGIVHNDEELIEIVSSGLKYSPVTQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEVEYEVMRDASDQAIVVCNMENFDPVGVHTGDSIVFAPSQTLTDRDYQMLRNSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNVQFALDADSDQYYIIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 96/288 (33%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  V+ H KP+       G   
Sbjct: 580 AIKEAGYEAIIMNNNPETVSTDFSTSDKLYFEPLTVEDVMHVVNHEKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     ++I  T    +  A   DK     +      P+  +       +     
Sbjct: 640 INLADQLAARGVKIIGTSLEDMDRAEDRDKFEQTLMALDIPQPLGKTATSVEQAVKIAAN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G EL    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMTHAVKINPKHPVLIDRYLTGKELEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +P  + +++        + +   G+
Sbjct: 760 DGENVYIPGMMEHIERAG---VHSGDSIAVYPPQTVPDHLKQKIIDRTIAIARGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +++     +V+ LE+N +   T     P ++   G S   L   
Sbjct: 817 LNIQYVWHQ--DEVYVLEVNPRSSRT----VPFLSKITGVSMANLATK 858


>gi|127513766|ref|YP_001094963.1| carbamoyl phosphate synthase large subunit [Shewanella loihica
           PV-4]
 gi|126639061|gb|ABO24704.1| carbamoyl-phosphate synthase large subunit [Shewanella loihica
           PV-4]
          Length = 1073

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G            + +L    +    +   A   + D+ R    +   G+    +  
Sbjct: 89  TMGGQTALNCALRLEAEGVLAEFNVDMIGATADAIDKAEDRSRFDAAMKKIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +I+P       G  +    +       Q    +  ++LLI++
Sbjct: 149 ARSMEDAYEVLEQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNSIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEQPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVEGAVISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L++ ++D   E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDHFLDNATEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  +   + P  +  +I  +++         +G  G
Sbjct: 767 CDGTTVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSQEIQDQMREQVRKLAMELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--QDNTIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|223043725|ref|ZP_03613768.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis
           SK14]
 gi|222442822|gb|EEE48924.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus capitis
           SK14]
          Length = 1057

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      L    +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQDAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVQIMGTSLEDLNRAEDRKEFEALLRQIEVPQPQGKTSTSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTKEEIDTLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRSI 860


>gi|256419971|ref|YP_003120624.1| carbamoyl phosphate synthase large subunit [Chitinophaga pinensis
           DSM 2588]
 gi|256034879|gb|ACU58423.1| carbamoyl-phosphate synthase, large subunit [Chitinophaga pinensis
           DSM 2588]
          Length = 939

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L + G +V  I+ +                      S+  +L   + D    
Sbjct: 29  SGSQAARSLREEGIRVVLINSNPATIMTDPMMADKVYLLPLTVESIEQILEEQQIDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            + G    +   +       E   +      I A   + D+ + +Q +      V    +
Sbjct: 89  TMGGQTALNLCKEVDELGIWEKFNVRLIGVDIKAIDKAEDREQFRQWMIRLGVPVAPAKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P VI+P       G   +   + +   L +    +   ++L+E+
Sbjct: 149 ANSFLEGKEFAQEIGFPLVIRPSFTLGGTGGGFVHSKEDLDEALQRGLQASPIHEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +                 + 
Sbjct: 209 AVLGWKEFELELLRDKNDNVVIICTVENLDPMGVHTGDSITVAPAMTLSDTAFQDMRNKA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IMMMRDLGNFAGGCNVQFSLNPENEELIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 31/296 (10%)

Query: 23  ASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGN 61
             A+++ G+    +         D D              +  ++   KP      L G 
Sbjct: 583 LQAIQECGYDAIMVNCNPETVSTDFDMANKLYFEPVFWEHLWEIIELEKPVGVIVQLGGQ 642

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                  +     + I  T    +  A    +            P   +       ++  
Sbjct: 643 TALKLAKRLEENGIRIIGTSFDNMDIAEDRGRFSELLEDLKIPFPKYGTAYNTDDAIEVA 702

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++  ++ +   +L       G+++LI+ ++D        
Sbjct: 703 KEVGYPVLVRPSYVLGGQRMRIVINEEELESSVLSLLKHLPGNKILIDHFLD---RCQEA 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240
             D   D     V     +       S +S  VLPA          ++  A    +A+  
Sbjct: 760 EIDGIFDGENFHVMGVMEHIEPAGIHSGDSNAVLPAFNLSPMEVTTMEYYAEKIARALDI 819

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           RG+    F       +VF +E N +   T     P +A      +  +   ++  A
Sbjct: 820 RGLINIQFAI--KGGQVFVIEANPRASRTT----PFIAKAYQVPYLNIATKVMLGA 869


>gi|257898605|ref|ZP_05678258.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15]
 gi|257836517|gb|EEV61591.1| carbamoyl-phosphate synthase [Enterococcus faecium Com15]
          Length = 1061

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  + + ++ +        S +   Q LIE+ 
Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRTVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELGIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|297180875|gb|ADI17080.1| carbamoylphosphate synthase large subunit (split gene in mj)
           [uncultured alpha proteobacterium HF0010_30A23]
          Length = 986

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDLADATYVEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  +       LE   +    +   +   + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTGLNTGLALHDDGTLEKYGVELIGARAESIEKAEDRQKFRDAMDKIGLESPRSLL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D+      P +++P       G  +    +     L      +   ++L+E+
Sbjct: 149 VTTMEQAEDALAKTGLPAILRPSFTLGGEGGGICYNREEFLEMLAGGLRLSPVTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          ++       
Sbjct: 209 SILGWKEFEMEVVRDHADNCIIVCSIENIDPMGVHTGDSITVAPSLTLTDKELQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPDNGRLIVIEMN--PRVSRSS--ALASKATGFPIANIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 24/172 (13%), Positives = 60/172 (34%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P       G+ ++   Q +   + ++   +  + +LI+ Y  D IE+  
Sbjct: 672 AEAIGYPVLLRPSYVLGGRGMEIVNDTQRLRKYVSEAVKVSGDNPVLIDSYLRDAIEVDV 731

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +           ++  + P  +   + ++++  A     A+ 
Sbjct: 732 DAICDGEQVYIAGIMEHIEEAGIHSG---DSACSLPPYSLSDALVEQLKAQAEKLAVALN 788

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F        ++ LE+N +   T     P +A   G    ++   
Sbjct: 789 VHGLMNVQFAV--QGEAIYVLEVNPRASRT----VPFVAKATGVPVAKIAAR 834


>gi|196247705|ref|ZP_03146407.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
 gi|196212489|gb|EDY07246.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
          Length = 1065

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  VQ     +LE   +    + + A   + D+ + +         VP    +
Sbjct: 90  LGGQTGLNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 90/296 (30%), Gaps = 30/296 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIELEQPVGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    +  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDVDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++   + +   +  +   N    +LI++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  D+ +++        + +  
Sbjct: 757 AISDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSADVIEKIVDYTVKLARGLRI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+    F+       V+ LE+N +   T     P ++   G     L    +  A
Sbjct: 814 VGLLNIQFVISDSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863


>gi|138894679|ref|YP_001125132.1| carbamoyl phosphate synthase large subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|134266192|gb|ABO66387.1| Carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1065

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  VQ     +LE   +    + + A   + D+ + +         VP    +
Sbjct: 90  LGGQTGLNLAVQLAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYEFVQQIGYPVIVRPAFTLGGTGGGICTNEEELIDIVSTGLKMSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 30/296 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIELEQPVGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    L  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQVLSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++   + +   +  +   N    +LI++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYGQEELLHYMEHAVRVNPQHPVLIDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  D+ +++        + +  
Sbjct: 757 AISDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSADVIEKIVDYTVKLARGLRI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+    F+       V+ LE+N +   T     P ++   G     L    +  A
Sbjct: 814 VGLLNIQFVISDSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863


>gi|262376632|ref|ZP_06069860.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii
           SH145]
 gi|262308342|gb|EEY89477.1| carbamoyl-phosphate synthase, large subunit [Acinetobacter lwoffii
           SH145]
          Length = 1076

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPTMADATYIEPITWQTVAAIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDEHGILEKFNVELIGATKEAIEKAEDRKLFDQAMRKIGLECPKADV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AESMEHALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFIEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEFQLLRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPKGIIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      M
Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  D+ +   L  +   ++   +L+++++D  IE+
Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDEELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNVQFAVKGED--VYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|51246948|ref|YP_066832.1| carbamoyl-phosphate synthase, large subunit [Desulfotalea
           psychrophila LSv54]
 gi|50877985|emb|CAG37825.1| probable carbamoyl-phosphate synthase, large subunit [Desulfotalea
           psychrophila LSv54]
          Length = 1073

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                     V  V+A  +PD    
Sbjct: 29  SGAQAVKALKEEGYEVILINSNPATIMTDPELADATYIEPITPECVTKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++     +LE   +    + I     +  +   +  + + G+ V  S +
Sbjct: 89  TLGGQTALNTAIKLAELGVLEQYNVELLAADIAVIKKAEGREEFRDAMHAIGLNVPESAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           I  P +++P       G  +    Q +          +   ++++E+
Sbjct: 149 VHDLESAMAAGEDIGFPIIVRPSFTLGGTGGGIAYNRQELEELCTSGLDLSMTTEIMVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +  +     
Sbjct: 209 SLLGWKEFELEVMRDKNDNVVIICSIENIDAMGVHTGDSITVAPAQTLTDREYQEMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAIIREIGVETGGSNVQFAVNPADGELMIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 91/294 (30%), Gaps = 31/294 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D              V  ++   KP        G   
Sbjct: 587 ALKELGVESIMINSNPETVSTDYDTSDKLYFEPLTREDVLNIIEQEKPYGVIVQFGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      + I  T    +  A    + +          P   ++      + S + 
Sbjct: 647 LNLAVPLENAGIRIIGTQPDAIDRAEDRKRFQQFLQKLGLRQPENDTVSTLEEALASANR 706

Query: 124 ISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           I  P V++P    G     IV          +    +      L+ +   + IE+    +
Sbjct: 707 IGYPVVVRPSYVLGGRNMRIVYTDQGIRDFMIAVGGTNLEHPILVDKFLQEAIEVDVDAL 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +           +S  + P  + L++ KE++  +    + +G  G
Sbjct: 767 CDGEDTIIGGIMEHIEEAGIHSG---DSSCVLPPHTLSLELVKEIKAASKAMAKELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +    F      ++V+ LE+N +   T     P ++   G    +L   ++  A
Sbjct: 824 LMNVQFAI--KDKQVYILEVNPRASRT----VPFVSKATGVPLAKLATKVMMGA 871


>gi|229552254|ref|ZP_04440979.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           rhamnosus LMS2-1]
 gi|258539664|ref|YP_003174163.1| carbamoyl-phosphate synthase large subunit [Lactobacillus rhamnosus
           Lc 705]
 gi|229314390|gb|EEN80363.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           rhamnosus LMS2-1]
 gi|257151340|emb|CAR90312.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus Lc 705]
          Length = 1060

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +   +    I  P +I+P       G  +   ++ +        + +   Q+LIE+
Sbjct: 149 ANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLNLSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEIEFEVMRDASDSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLAKRGIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        +A+ C G
Sbjct: 759 SDGETVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRALNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFIIHQ--GKAYVIEVNPRASRT----VPFLSKVTNVKLAQV 855


>gi|199598366|ref|ZP_03211785.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           HN001]
 gi|258508451|ref|YP_003171202.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus GG]
 gi|199590685|gb|EDY98772.1| Carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           HN001]
 gi|257148378|emb|CAR87351.1| Carbamoyl-phosphate synthase, large subunit [Lactobacillus
           rhamnosus GG]
 gi|259649764|dbj|BAI41926.1| carbamoylphosphate synthase large subunit [Lactobacillus rhamnosus
           GG]
          Length = 1060

 Score = 65.3 bits (157), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALREEGYEVVLVNSNPATIMTDTEIADRVYIEPLTVEFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  ++     IL+ L I    + + A   + D+   ++        VP    
Sbjct: 89  TIGGQIGLNLAMKLSNTGILDELGIELLGTKLSAIDQAEDRELFKNLMQKLHEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +   +    I  P +I+P       G  +   ++ +        + +   Q+LIE+
Sbjct: 149 ANNVQEAQEFADKIGFPVIIRPAFTMGGTGGGIADNEKELAEIAENGLNLSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + I V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-YKEIEFEVMRDASDSAIVVCNMENFDPVGVHTGDSMVFAPTQTLTDKEVQMLRDS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQFALDRNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 83/286 (29%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSIADKLYFEPLTLEDVLNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +    
Sbjct: 639 AINLAEPLAKRGIKILGTSVADLNRAEDRDLFDQVIKELKLPQPEGGTATDKDGALAVAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVHNADELASYIDRAVSVSHDHPVLIDHYLVGKECEVDCI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +     P     DI  ++        +A+ C G
Sbjct: 759 SDGETVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRALNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+      K + +E+N +   T     P ++        ++
Sbjct: 816 LMNVQFIIHQ--GKAYVIEVNPRASRT----VPFLSKVTNVKLAQV 855


>gi|293570486|ref|ZP_06681541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E980]
 gi|291609432|gb|EFF38699.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E980]
          Length = 1061

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|257887481|ref|ZP_05667134.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733]
 gi|257895976|ref|ZP_05675629.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12]
 gi|293377434|ref|ZP_06623636.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           PC4.1]
 gi|257823535|gb|EEV50467.1| carbamoyl-phosphate synthase [Enterococcus faecium 1,141,733]
 gi|257832541|gb|EEV58962.1| carbamoyl-phosphate synthase [Enterococcus faecium Com12]
 gi|292643952|gb|EFF62060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           PC4.1]
          Length = 1061

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|227551410|ref|ZP_03981459.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus
           faecium TX1330]
 gi|227179419|gb|EEI60391.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Enterococcus
           faecium TX1330]
          Length = 1069

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 38  GTQACLALKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 97

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 98  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 157

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 158 NTVEEAVAFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 217

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 218 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 276

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 277 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 332

Query: 292 M 292
           +
Sbjct: 333 I 333



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 587 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 646

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 647 AINLAEPLTTAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 706

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 707 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 767 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 824 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 868


>gi|320353055|ref|YP_004194394.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
 gi|320121557|gb|ADW17103.1| carbamoyl-phosphate synthase large subunit [Desulfobulbus
           propionicus DSM 2032]
          Length = 1074

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                     V  V+   +PD    
Sbjct: 29  SGAQAVKALKEEGYEVVLINSNPATIMTDPGLADRTYIEPITPECVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+   +  ++  A   ++ R         VP    
Sbjct: 89  TLGGQTGLNTAIKVAELGVLERYGVELLAANIEVIRKAEGREEFRDAMRKIGLKVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M +   I  P +++P       G  V      +   +      +   ++++E+
Sbjct: 149 VHTIDEAMAAGERIGFPIIVRPSFTLGGTGGGVAYNRAELNKMVTAGLDLSMTTEVMLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +  +  +      +          +  +     
Sbjct: 209 SLLGWKEYELEVMRDRNDNVVIICSIENVDAMGVHTGDSITVAPAQTLTDREYQEMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREIGVETGGSNVQFAVNPADGELMVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 80/253 (31%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD       G    +  V    + + I  T    +  A    + +    
Sbjct: 623 EDVLNIIEREKPDGVIVQFGGQTPLNLAVPLAKQGVPIIGTSPDAIDRAEDRKRFQQFLQ 682

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   +       +     I  P V++P        + ++  +Q I   +     
Sbjct: 683 KLGLRQPANGTAHTLDEALAVAGEIGYPVVMRPSYVLGGRDMRIVYNEQGIRSFMAIPGM 742

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                 +L++Q+  D IE+    + D S+ V    +   +           ++  + P  
Sbjct: 743 SGGEHPVLLDQFLKDAIEVDVDAISDGSMTVIGGIMEHIEEAGIHSG---DSACVLPPHT 799

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +   + +E+        + +G  G+    F      + ++ LE+N +   T     P ++
Sbjct: 800 LSPAMIEEITAATKAMAKELGVIGLMNVQFAV--QGQTLYVLEVNPRASRT----VPFVS 853

Query: 279 AYAGYSFRELLLW 291
              G    ++   
Sbjct: 854 KATGVPLAKIATK 866


>gi|134295355|ref|YP_001119090.1| carbamoyl phosphate synthase large subunit [Burkholderia
           vietnamiensis G4]
 gi|134138512|gb|ABO54255.1| carbamoyl-phosphate synthase large subunit [Burkholderia
           vietnamiensis G4]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|295706345|ref|YP_003599420.1| carbamoyl-phosphate synthase large subunit [Bacillus megaterium DSM
           319]
 gi|294804004|gb|ADF41070.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium
           DSM 319]
          Length = 1070

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GAQACIALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +         ILE   +    + + A   + D+ + +      +  VP    I
Sbjct: 90  LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       ++ P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 97/294 (32%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L +A    K  +         P+  ++      +     
Sbjct: 640 INLADELEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVVVAKE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMEHAVKVHADHPVLIDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D+   +        + +   G+
Sbjct: 760 DGETVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
               F+      +VF LE+N       P ++ ++  P          G S REL
Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868


>gi|294500996|ref|YP_003564696.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
 gi|294350933|gb|ADE71262.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
          Length = 1070

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GAQACIALKEEGYKVILVNSNPATIMTDSEMADKVYIEPLTVEFVSSIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +         ILE   +    + + A   + D+ + +      +  VP    I
Sbjct: 90  LGGQTGLNLAVELHETGILEEFNVEILGTKLSAIEQAEDREQFRSLMNELNQPVPASEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       ++ P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HSLDEAYAFVEQVNYPVIVRPAYTLGGTGGGICNNEQELIEIVTSGLKHSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 97/294 (32%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L +A    K  +         P+  ++      +     
Sbjct: 640 INLADELEARGVKILGTSLESLDAAEDRKKFEATLARLEVPQPLGKTVTSVEEAVIVAKE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMKHAVKVHADHPVLIDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D+   +        + +   G+
Sbjct: 760 DGETVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSQDVKDTIIDYTTRIAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
               F+      +VF LE+N       P ++ ++  P          G S REL
Sbjct: 817 LNIQFVL--SKGEVFVLEVNPRSSRTVPFLSKITRIPMANVATKVILGTSLREL 868


>gi|85374184|ref|YP_458246.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
 gi|84787267|gb|ABC63449.1| hypothetical protein ELI_06785 [Erythrobacter litoralis HTCC2594]
          Length = 336

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/256 (18%), Positives = 88/256 (34%), Gaps = 11/256 (4%)

Query: 52  DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D  F +L+  G    + L+  +  +  IPY  +      L  DK  SK V +  GVP   
Sbjct: 73  DFVFPLLNRGGFVNSEMLIPTLCNMHRIPYLGAMPFLRGLGDDKSVSKLVSTHAGVPTAD 132

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-- 163
                R     +  +       +VIKP    +S GI      Q +   +       H   
Sbjct: 133 WFCFRRGAPVEEASLPAAPDGRWVIKPNASSASWGISDAFDFQGVANAIANIHGQGHDAI 192

Query: 164 -DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL--PAKIP 220
            +  L    V    +T      A   +          ++Y  K   + +T          
Sbjct: 193 VEPYLDGYDVQCAFITIDGEARALPMLWYEREDTQKLWTYYEKRDLVQNTEKAALKTFDN 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            D    +  +A    + +      R +F  D     + ++EIN+   +    +  + A +
Sbjct: 253 PDFAPLITDMARKVARELLPFDYGRIEFRVDLEKGDINFIEINLNCNLWSEKVMAKAAKF 312

Query: 281 AGYSFRELLLWMVEDA 296
           AG+S  +LL  ++ ++
Sbjct: 313 AGFSHADLLETLLAES 328


>gi|317124732|ref|YP_004098844.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum
           DSM 43043]
 gi|315588820|gb|ADU48117.1| carbamoyl-phosphate synthase large subunit [Intrasporangium calvum
           DSM 43043]
          Length = 1128

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEFADATYIEPITPEFVEAIIAKERPDAVLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G              +LE    P   + + A  L  D+ + K VV  CG     S++
Sbjct: 89  TLGGQTALNCAIALHENGVLERYNCPLIGASVEAIQLGEDRQKFKGVVERCGAESARSVI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +   +S P V++P      LG      +  +         ++   ++L+E+
Sbjct: 149 CHTMEECLAAADELSYPVVVRPSFTMGGLGSGFAYDEDDLRRIAGAGLQYSPVTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELEVMRDHRDNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVETGGCNIQFAVNPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            M
Sbjct: 325 KM 326


>gi|167625073|ref|YP_001675367.1| carbamoyl phosphate synthase large subunit [Shewanella halifaxensis
           HAW-EB4]
 gi|167355095|gb|ABZ77708.1| carbamoyl-phosphate synthase, large subunit [Shewanella
           halifaxensis HAW-EB4]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELESRGVLKEFNVDMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       Q    +  ++LLI++
Sbjct: 149 AHTMDEARAVQAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTFEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLDMKQPENDTVTTVEGAVISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  +I   ++         +G  G
Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQEIQDRMREQVGKLAMELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|254281971|ref|ZP_04956939.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR51-B]
 gi|219678174|gb|EED34523.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR51-B]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPVEWQTVARIIEKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G            + +L    +    +   A   + ++ +  + +   G+    +  
Sbjct: 89  TMGGQTALNCALKLAERGVLHEHGVEMIGATREAIDKAENREQFDRAMKRIGLETPRADL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +            +    +   +LLI++
Sbjct: 149 AHSMEEAFKVLDDIGFPCIIRPSFTMGGSGGGIAYNRDEFEQICTRGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 103/321 (32%), Gaps = 45/321 (14%)

Query: 1   MAVLMGGISS-----ERE---VSLSSGKACASALEDAGFKVSQI---------DVD---- 39
           + VL GG +      E +   V      A   A+ + G++   I         D D    
Sbjct: 561 IVVLGGGPNRIGQGIEFDYCCV-----HAVL-AMREDGYETIMINCNPETVSTDYDTSDR 614

Query: 40  --------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
                     V  ++   +P+       G              + I  T    +  A   
Sbjct: 615 LYFEPVSLEDVLEIIDLEQPEGVIVQFGGQTPLKLARALEEAGVPIIGTTPDEIDRAEDR 674

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ +          P   ++      +++   I  P V++P        + ++ +++ + 
Sbjct: 675 ERFQQMINKLGLRQPANTTVRSVDEAIEAARNIGYPLVVRPSYVLGGRAMEIVYREEDLL 734

Query: 152 LDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
             +  +   +    +L++ ++   IE+    + D    V    +   +       +S  +
Sbjct: 735 RYMRDAVRVSDDSPVLLDSFLSAAIEVDIDAVSDGKDVVIGAIMQHIEQAG---VHSGDS 791

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P  +  ++   ++ +       +G  G+      +     +++ +E+N +   T 
Sbjct: 792 ACSLPPYNLDAEVQNRMRDIVKQMGIELGVCGLMNVQLAY--QDGEIYVIEVNPRASRT- 848

Query: 271 VSIFPEMAAYAGYSFRELLLW 291
               P ++   G S  ++   
Sbjct: 849 ---VPFVSKAIGLSLAKVAAR 866


>gi|221201964|ref|ZP_03575000.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD2M]
 gi|221204906|ref|ZP_03577923.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD2]
 gi|221175763|gb|EEE08193.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD2]
 gi|221178047|gb|EEE10458.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD2M]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     S+              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +    I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|221213883|ref|ZP_03586856.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD1]
 gi|221166060|gb|EED98533.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans CGD1]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     S+              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +    I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|161525198|ref|YP_001580210.1| carbamoyl phosphate synthase large subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189350063|ref|YP_001945691.1| carbamoyl phosphate synthase large subunit [Burkholderia
           multivorans ATCC 17616]
 gi|160342627|gb|ABX15713.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189334085|dbj|BAG43155.1| carbamoyl-phosphate synthase large chain [Burkholderia multivorans
           ATCC 17616]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     S+              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEASKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +    I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|319778421|ref|YP_004129334.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis
           MCE9]
 gi|317108445|gb|ADU91191.1| Carbamoyl-phosphate synthase large chain [Taylorella equigenitalis
           MCE9]
          Length = 1081

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 47/320 (14%), Positives = 92/320 (28%), Gaps = 47/320 (14%)

Query: 18  SGKACASALEDAGF-------------------KVSQIDVD--RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+                    V  I+    +S+  V+   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVIYIEPITWKSLEKVIEIEKPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G  A A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALELAKQGVLEKHGVELIGANAHAIEKAEDRMKFKEAMSSIGLESAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +MD    +             P VI+P       G  +    +      ++    +  
Sbjct: 149 AHSMDEAWDVQRRIAEEIGTAGFPVVIRPSFTLGGTGGGIAYNPEEFEAICMRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA---- 279
                    +  +     G S   F  +P + ++  +E+N  P ++  S     A     
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPANGRMIVIEMN--PRVSRSSALASKATGFPI 326

Query: 280 -------YAGYSFRELLLWM 292
                    GY+  ELL  +
Sbjct: 327 AKVASRLAVGYTLDELLNEI 346



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 95/294 (32%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL  +  G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALSLKQDGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLEIVDIEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G           L  + I  T    +  A   ++ +      +   P   +       +
Sbjct: 644 GGQTPLKLARDLELNGVPILGTSPESIDIAEDRERFQKLLQKLNLKQPPNRTARTEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++     +   +  +   ++   +L+++Y  D IE+
Sbjct: 704 TLAKEIGYPLVVRPSYVLGGRAMEIVHDQMDLERYMTAAVKVSNDSPVLLDRYLNDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +       +   +       +S  ++  + P  +  +I  E++R   L  +A
Sbjct: 764 DVDCICDGNEVFIAGVMEHIEQAG---VHSGDSACSIPPHSLSKEIVDEIKRQTRLMAKA 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  RG+    F     S +V+ LE+N +   T     P ++   G    ++   
Sbjct: 821 LNVRGLMNVQFAI--QSNEVYVLEVNPRASRT----VPFVSKATGLPVAKIAAR 868


>gi|260497942|ref|ZP_05816059.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_33]
 gi|260196503|gb|EEW94033.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_33]
          Length = 1061

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 33  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 92

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 93  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 152

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q LIE+ 
Sbjct: 153 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLIEKS 212

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 213 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 271

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 272 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 327

Query: 292 M 292
           +
Sbjct: 328 I 328



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
              A++  G++   I+ +                       V  +L   KP        G
Sbjct: 580 AIKAIKKMGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  +    + +A   D+     +      P+  +       + +
Sbjct: 640 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKN 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+   
Sbjct: 700 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D         +   +       +S  + +   P  +     + +        + +  
Sbjct: 760 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+      +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 863


>gi|307243168|ref|ZP_07525341.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           stomatis DSM 17678]
 gi|306493429|gb|EFM65409.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           stomatis DSM 17678]
          Length = 1071

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 94/296 (31%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  A   AL   G +   I         D D              V  ++   KP+    
Sbjct: 577 SVHAVM-ALRKLGIETIIINNNPETVSTDFDTSDKLYFEPLTEEDVYHIIEKEKPEGVIL 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G            + ++I  T    + +A   +K        +   P    +     
Sbjct: 636 QFGGQTAIKLAKFLSEKGVKILGTDFKDIDAAEDREKFEDLLESLNINRPKGKGVWSVAE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E
Sbjct: 696 GVEVATQLGYPVLVRPSYVLGGQGMEITYDEVRLTQYLEDAFDRDPMNPVLIDKYLTGRE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + P++ I   I  ++     +  
Sbjct: 756 IEVDAICDGKDILI----PGIMEHLERAGVHSGDSITMYPSQGISDKIKDKIYEYTKMMA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +   G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 812 LNLNVVGMVNIQFI--EYKDELYIIEVNPRASRT----VPYISKVSGVPIIDLATK 861



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/319 (14%), Positives = 98/319 (30%), Gaps = 42/319 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLINSNPATIMTDQEIADHIYIEPLTLDFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V            ++I  T    +      D  R         V     
Sbjct: 89  GMGGQTGLNLAVDLYEAGILDKYGVKIIGTSVESIKKGEDRDTFREVMREIGQPVIESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P V++P       G  + + ++ +   L      +   Q L+E+
Sbjct: 149 VTTLEEGLAYANRIGYPVVVRPAYTLGGTGGGIAETEEELRETLTHGLELSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229
            + G                      +      +   + +S  V P++   ++ Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGNCITVCNMENIDPVGVHTGDSIVVAPSQTLSNLEYQMLRT 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +     AIG  G        +P S +   +EIN  P ++  S     +   GY   ++ 
Sbjct: 267 ASLDIIDAIGVEGGCNVQLALNPKSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVA 322

Query: 290 LWM--------VEDASCLR 300
             +        +E+A   +
Sbjct: 323 AKIALGYTLDEIENAVTKK 341


>gi|314936634|ref|ZP_07843981.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           subsp. hominis C80]
 gi|313655253|gb|EFS18998.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           subsp. hominis C80]
          Length = 1057

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  +Q      L+   +    + + +   + D+   + +++   VPV  S +V
Sbjct: 90  LGGQTGLNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIV 149

Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N              P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVKILGTSLEDLNRAEDRKEFETLLRKIDVPQPKGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  K ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860


>gi|228474952|ref|ZP_04059680.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           SK119]
 gi|228270937|gb|EEK12325.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus hominis
           SK119]
          Length = 1057

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  +Q      L+   +    + + +   + D+   + +++   VPV  S +V
Sbjct: 90  LGGQTGLNMAIQLHDSGVLKANNVELLGTKLESIQQAEDRELFRSLMNDLDVPVPESDIV 149

Query: 114 NRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N              P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFAFKEQVGYPLIVRPAFTMGGTGGGICHNDEELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPYSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVKILGTSLEDLNRAEDRKEFEALLRKIDVPQPKGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  K ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSDEEIKTLEDYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860


>gi|226949085|ref|YP_002804176.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A2 str. Kyoto]
 gi|254813561|sp|C1FNY3|CARB_CLOBJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226840847|gb|ACO83513.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A2 str. Kyoto]
          Length = 1068

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KPD       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +    DI +++          IG
Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  I+ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+      L+   +    + I +     D+   + V+S    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINGPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     +IG +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|168180417|ref|ZP_02615081.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           NCTC 2916]
 gi|182668854|gb|EDT80832.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           NCTC 2916]
          Length = 1068

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KPD       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNISTLGTTADQIDMAEDREKFDELLEKLKIARPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +    DI +++          IG
Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  I+ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEGLKEEGVEVVLINSNPATIMTDKKVADKVYLEPLTVEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+      L+   +    + I +     D+   + V+S    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTDMENGKAFANKIGYPIIVRPAYTLGGTGGGIAESEEELDEILALGLQLSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSRGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     +IG +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SINILNSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|86159932|ref|YP_466717.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85776443|gb|ABC83280.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1067

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 91/306 (29%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +   + +L+   +      + A     D+   K+ ++  G+    S +
Sbjct: 89  NLGGQTGLNLSSELARKGVLDQYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G       + +     +    +   Q+L+E+
Sbjct: 149 ATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G E                            +            +P     ++   +
Sbjct: 209 SVLGWEELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTIPP----ELQARL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  A+    AI   G +   F  DP + +V  +EIN +   T  S     +   G+    
Sbjct: 265 QDQAYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSSML 325



 Score = 38.3 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 82/272 (30%), Gaps = 18/272 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    +PD       G    +   Q     + I  T    + 
Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLNIARQLEQAGVRILGTSPETID 663

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P           +     +  P +++P       G+ V+  
Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDLDEALALAGRMGYPLIVRPSYVLGGRGMEVVHD 723

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++   +    L +++++           DA  D TE  VP    +      
Sbjct: 724 EEMLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTEAFVPAVMEHIELAGV 780

Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263
            S +S   + P  +  +    ++         +G  G+    +        V+ LE N  
Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--ADGIVYVLEANPR 838

Query: 264 ---VQPGMTPVSIFPEMAAYA----GYSFREL 288
                P ++ V   P     A    G   R+L
Sbjct: 839 ASRTVPLVSKVCDLPMARIAAQVVLGMRLRDL 870


>gi|254304289|ref|ZP_04971647.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324481|gb|EDK89731.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         +L+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGVLDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    +  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREHHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     V      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLVDLKIPQPLGKTAFDVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|71906578|ref|YP_284165.1| carbamoyl phosphate synthase large subunit [Dechloromonas aromatica
           RCB]
 gi|71846199|gb|AAZ45695.1| carbamoyl-phosphate synthase large subunit [Dechloromonas aromatica
           RCB]
          Length = 1068

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPITWQVVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLDREGVLAKFNVELIGASKEAIDKAEDRQKFKDAMTKIGLGSAKSAT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q +I  P +I+P       G  +    +   +   +    +  ++LLIE+
Sbjct: 149 AHSMEEAYQVQAVIGFPTIIRPSFTLGGTGGGIAYNMEEFEIICKRGLEASPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/322 (12%), Positives = 100/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A A+ + G++   +         D D S 
Sbjct: 556 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 608

Query: 43  GLVLAHLKPDLAFNVL------------HGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    +              G       +      + I  T    +  A  
Sbjct: 609 RLYFEPLTLEDVLEICAIEKPVGVIVQYGGQTPLKLALALEANGVPIIGTTPESIDIAED 668

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + + +
Sbjct: 669 RERFQKLLHDLGLKQPPNRTARTEEDALRLAQEIGYPLVVRPSYVLGGRAMEIVHEQKDL 728

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D +E     + D    +    +   +       +S  
Sbjct: 729 ERYMREAVKVSNDSPVLLDRFLNDAVECDVDALSDGEEVIIGGVMEHIEQAG---VHSGD 785

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +   +  E++R   L  +A+   G+    F        V+ LE+N +   T
Sbjct: 786 SACSLPPYSLSAAVQDELRRQTKLMAKALNVCGLMNVQFAI--KDNDVYVLEVNPRASRT 843

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 844 ----VPFVSKATGLQLAKIAAR 861


>gi|296331128|ref|ZP_06873602.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305674283|ref|YP_003865955.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151772|gb|EFG92647.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412527|gb|ADM37646.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 1071

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSERGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNDLNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAENFVSQIGFPVIVRPAYTLGGTGGGICSNETELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSQDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIKQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPMGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK            P+  +       +     
Sbjct: 640 INLADELSARGVKILGTSLEDLDRAEDRDKFEQALGELGVPQPLGKTATSVDQAVSIASN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           IS P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 ISYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLTEDIKKKIEQYTIALAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++   G     L   ++
Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITGIPMANLATKVI 860


>gi|317154409|ref|YP_004122457.1| D-alanine--D-alanine ligase domain-containing protein
           [Desulfovibrio aespoeensis Aspo-2]
 gi|316944660|gb|ADU63711.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio
           aespoeensis Aspo-2]
          Length = 337

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 98/300 (32%), Gaps = 24/300 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGL---VLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
           +  +  L + G+ V ++++   +G     L  ++P + FN++      D L      +  
Sbjct: 28  RFVSRVLRELGWSVVEVELGSDLGEAVSTLQGIRPGVVFNLVESIMDSDELANLTPVIFR 87

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPP--YVIKPLK 134
                     S++                   P+      T   +     P  Y++K   
Sbjct: 88  KLGLPFTGADSSVLFLTNDKLAAKRHMQSVGLPTPAGVDETGLKRGRFPGPGRYIVKSRC 147

Query: 135 GGS----SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL--- 187
             +        +V  K     L  + +     G   L E+++DG E +  ++  A     
Sbjct: 148 EHASLGLDETSVVNVKTADELLAAMAARRHKLGGSCLAERFIDGREFSVSLLETAHHASV 207

Query: 188 -----DVTEIAVPKSDFYSYELKYSS------LNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                ++   A        Y+ K+                 K    +   +++ A     
Sbjct: 208 VLGSAEIVFRADMPVKIVGYDAKWEEGSDADLSTVRGFAFRKAEPGLAARLEQTARDCWD 267

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +G  G +R DF  D     +  +++N  P ++  + F   A  +G    +++  +V+ A
Sbjct: 268 EMGLSGYARVDFRVDAE-GALSIIDVNANPCLSENAGFMATARESGRKPSDVISAIVDGA 326


>gi|262369444|ref|ZP_06062772.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046]
 gi|262315512|gb|EEY96551.1| carbamoyl-phosphate synthase [Acinetobacter johnsonii SH046]
          Length = 1077

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPITWQTVAQIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         + A   L +      G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALALDANGILEKYNVELIGATKEAIEKAEDRKLFDEAMRKIGLECPKAAI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              M+    I      P +I+P       G  +    +       +    +   QLLI++
Sbjct: 149 AENMEEALEIQARFGFPVIIRPSFTMGGSGGGIAYNKEEFLEICERGFDLSPTKQLLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEKPKGIIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      M
Sbjct: 642 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGM 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  D  +   L  +   ++   +L+++++D  IE+
Sbjct: 702 AEASKVGYPLVVRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDRFLDDAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  + ++I  E++R      + 
Sbjct: 762 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSVEIQDEMRRQTVAMAKE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        V+ LE+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQFAVKGED--VYILEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|187735745|ref|YP_001877857.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
 gi|187425797|gb|ACD05076.1| carbamoyl-phosphate synthase, large subunit [Akkermansia
           muciniphila ATCC BAA-835]
          Length = 1067

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 90/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETAPRTYIEPITPEFVEKIIIREKPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            L G    +  ++     +        I A+A ++D+   + +     + +   +  +  
Sbjct: 89  TLGGQTALNCAMELHRSGVLEREKVRMIGANANAIDRGEDRNLFKEAMLRIGLDVPRSGI 148

Query: 117 TMDSQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +            P +++P      +G  V            +    +   ++LIE
Sbjct: 149 AHTMEEARRVAGDIGTFPLIVRPAFTLGGMGGGVAYNKTEFEEICARGLDLSPVSEILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +     +      +   +      +       
Sbjct: 209 ESLIGWKEFEMEVMRDRADNCVVICSIENIDPMGVHTGDSITVAPIQTLTDREYQAMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   +L 
Sbjct: 269 SFAVIREIGVETGGSNIQFAINPANGRMIVIEMN--PRVSRSS--ALASKATGFPIAKLA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 92/286 (32%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KPD       G   
Sbjct: 579 ALREMGYETIIVNSNPETVSTDYDSSDKLFFEPLTLEDVLHICEQEKPDGVIVQFGGQTP 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   +   +             +             
Sbjct: 639 LNLANALEAHGVPIIGTSPRAIDLAEDREHFSALLKELGLKQAEAGTATNVEDAAAIAAR 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P +++P       G+I++ +++ +   + ++   +    +LI+++++  +E+   V+
Sbjct: 699 IGYPVLLRPSFVLGGRGMIIVYEEKELRRYMNEAVEASEERPVLIDRFLENAVEIDVDVI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +++ +    I + ++KE+ R +      +   G
Sbjct: 759 ADRERAVIGAIMQHVEPAGIHSG---DSASMIPAMGISMKMHKEITRASKELASKLNVCG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F       +++ +E+N +   T     P ++   G    +L
Sbjct: 816 LMNIQFAV--KDEQLYVIEVNPRASRT----VPFVSKSIGKPLAKL 855


>gi|73662878|ref|YP_301659.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|82592666|sp|Q49WY4|CARB_STAS1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|72495393|dbj|BAE18714.1| carbamoyl-phosphate synthase large subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
          Length = 1057

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++                         +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDNEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++  GVPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGELEANNVKLLGTELESIQQAEDRELFRTLMNDLGVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D      +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFAFKEEVGYPLIVRPAFTMGGTGGGICHNDAEFKEIVTNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQQAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIIDLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHDVKILGTSLEDLNRAEDRKEFEALLHTIDVPQPNGKTATSPQEALENARS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELEDYMNQAVKASPDHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLKQEEMTTLEDFTIRLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITNIQMAQLAMRAI 860


>gi|330506389|ref|YP_004382817.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
 gi|328927197|gb|AEB66999.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
          Length = 1070

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 102/296 (34%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+K+  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACKALKALGYKIVLVNSNPATIMTDPGMADATYIEPLNVERLAQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +         IL+   +      + A     D++  K+ ++S G+ V  S  
Sbjct: 89  NLGGQNGLNLSLELARAGILDKFNVMVIGVKLDAIERGEDRIIFKETMNSLGIEVPKSTA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I            +  P V++P       G  ++   + +   + +  + +   Q+LIE+
Sbjct: 149 IYTVEDAEKVALDLGYPVVVRPAYTMGGTGGGLVYNAEELRTVVSRGIAASLIGQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   S +         +  +  +       T  +   I  ++  ++Q  
Sbjct: 209 SVAGWEELELEVVRDSKNHMITVCFIENVDAMGVHTGDSFCTAPM-LTISQELQDKLQDY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+   
Sbjct: 268 SYRIVEAIKVIGGTNIQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA 319


>gi|83816045|ref|YP_445261.1| D-alanine--D-alanine ligase superfamily protein [Salinibacter ruber
           DSM 13855]
 gi|83757439|gb|ABC45552.1| D-ala D-ala ligase C-terminus superfamily [Salinibacter ruber DSM
           13855]
          Length = 294

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 51/276 (18%), Positives = 101/276 (36%), Gaps = 18/276 (6%)

Query: 29  AGFKVSQIDVDRSVGLVLAH-LKPDLAFNVLHGNFGEDG--LVQAILELLEIPYTHSGIL 85
            G    ++     +   L   L  D A N+  G    +    V  +LE+  +P   S  L
Sbjct: 4   LGHTPVRVGTAADLRDRLGEGLSLDAAINITEGAHSRNREAYVPILLEMAGVPCLGSDAL 63

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS--PPYVIKPLKGGSSLGII- 142
             ++++DK  +K +V++  +P  P  + +         +    P  +KP   G+S GI  
Sbjct: 64  TLSVTLDKAWTKDLVAAADIPTPPHRVYSAPEAVDADDLPGAFPLFVKPRYEGTSKGITP 123

Query: 143 --VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
              ++   ++   + + ++    D +       G E T  V+G    +   +     +  
Sbjct: 124 DSKVEDVAALRRAVDRITTTYDQDAVAEPFVAGGGEFTVAVVGHDPPEALPVLQRGVEPT 183

Query: 201 ---------SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
                          +  +  + L   +   +   +Q L+  A   + CR  +R+DF  D
Sbjct: 184 TGLGLHALEHRGAPTADQDWEYELRGTLAPALEDRLQALSRRAFDTLDCRDFARADFRVD 243

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
                 ++LEIN  P   P   F  +A   G  + +
Sbjct: 244 G-DGTPWFLEINPLPTFKPDDTFAIVAELMGRDYVD 278


>gi|87308406|ref|ZP_01090547.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Blastopirellula marina DSM 3645]
 gi|87288963|gb|EAQ80856.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Blastopirellula marina DSM 3645]
          Length = 1088

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPDMADRTYIEPLSWEIIEKIIAKERPDALLP 88

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G          +         +E+   ++ ++A A   ++ ++        V    +
Sbjct: 89  TLGGQTALNLAMELEKHGVLEKYGVEMIGANAAVIAKAEEREQFKAAMEKIGLEVCRGGT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +        I  P V++P       G  +    +     +      +  +++LIE+
Sbjct: 149 VHTIQEARAVLDEIGLPAVVRPSFTMGGSGSAIAYNREEFDSLVRNGLDQSPVNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVIGWKEYEMEVMRDVADNVVIICTIENFDPVGVHTGDSITVAPAQTLSDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP S ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVIREIGVETGGSNIQFANDPHSDRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 84/283 (29%), Gaps = 31/283 (10%)

Query: 25  ALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   +              D+          V  +   ++PD       G   
Sbjct: 593 ALRELGIESIMVNSNPETVSTDYDTSDILFFEPLTTEDVLNICDKVQPDGVIVQFGGQTP 652

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    + +A   +K +          P                 
Sbjct: 653 LNLARALATAGVPIIGTSVDTIEAAEDREKFQKLLNQLGLKQPANAIARTMTQARTESAK 712

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           +  P +++P        + +   D+     + ++     G  +LI+++  D  E+    +
Sbjct: 713 VGYPSLVRPSFVLGGRAMEICYDDKQFERYVAEAFLVAQGQPVLIDRFLEDATEVDVDCI 772

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +P  +  E++       + +   G
Sbjct: 773 SDGENVVVAGIMEHIEEAG---VHSGDSACSIPPYSLPGPVVNEIREATVAMARKLKVIG 829

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +    F       K  V+ LE+N +   T     P +A   G 
Sbjct: 830 LMNVQFAVKQEDGKMNVYVLEVNPRASRT----VPFVAKATGM 868


>gi|327482036|gb|AEA85346.1| carbamoyl phosphate synthase large subunit [Pseudomonas stutzeri
           DSM 4166]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLEKHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKNIGLACPESGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAYAVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.6 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPQNATARSEEEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +    IE+
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYEL-KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               + D    V    +   +         +     + LP  I  +I ++V+++A     
Sbjct: 762 DVDAVCDGETVVIGGIMQHIEQAGVHSGDSACSLPAYSLPQHIQDEIREQVRKMALE--- 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +   G+             ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 -LDVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|146283641|ref|YP_001173794.1| carbamoyl phosphate synthase large subunit [Pseudomonas stutzeri
           A1501]
 gi|145571846|gb|ABP80952.1| carbamoylphosphate synthetase large subunit [Pseudomonas stutzeri
           A1501]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + + + G+    S  
Sbjct: 89  TMGGQTALNCALDLEKHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKNIGLACPESGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNMEEAYAVLDKVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.6 bits (93), Expect = 0.30,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 35/295 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPDAIDRAEDRERFQQMVQRLNLRQPQNATARSEEEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
            +   I  P V++P        + ++ +++ +   + ++   ++   +L++ +    IE+
Sbjct: 702 AASKAIGYPLVVRPSYVLGGRAMEIVYEEEELKRYMREAVQVSNDSPVLLDHFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYEL-KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               + D    V    +   +         +     + LP  I  +I ++V+++A     
Sbjct: 762 DVDAVCDGETVVIGGIMQHIEQAGVHSGDSACSLPAYSLPQHIQDEIREQVRKMALE--- 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +   G+             ++ LE+N +   T     P ++   G S  ++   
Sbjct: 819 -LDVVGLMNVQMAVQGED--IYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 866


>gi|209559197|ref|YP_002285669.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           NZ131]
 gi|226700940|sp|B5XKW2|CARB_STRPZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|209540398|gb|ACI60974.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           NZ131]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNDQVYVIEVNPRASRT----VPFLSKVPGIPMAQIATKLI 860


>gi|162139406|ref|YP_280093.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS6180]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|162139185|ref|YP_602227.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10750]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSILIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|162139108|ref|YP_598311.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10270]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|162139084|ref|YP_596431.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS9429]
 gi|162139133|ref|YP_600307.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS2096]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|139473990|ref|YP_001128706.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           str. Manfredo]
 gi|167006450|sp|A2RF60|CARB_STRPG RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|134272237|emb|CAM30489.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           str. Manfredo]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|187924843|ref|YP_001896485.1| carbamoyl phosphate synthase large subunit [Burkholderia
           phytofirmans PsJN]
 gi|187716037|gb|ACD17261.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           phytofirmans PsJN]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 92/320 (28%), Gaps = 47/320 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IF 274
                    +  +     G S   F  +P   ++  +E+N  P ++  S           
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSSALASKATGFPI 326

Query: 275 PEMAA--YAGYSFRELLLWM 292
            ++AA    GYS  EL   +
Sbjct: 327 AKIAAKLAVGYSLDELKNEI 346



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|94543719|gb|ABF33767.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10270]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 45  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339

Query: 292 M 292
           +
Sbjct: 340 I 340



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875


>gi|94547637|gb|ABF37683.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10750]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 45  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339

Query: 292 M 292
           +
Sbjct: 340 I 340



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 774 SDGKSILIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875


>gi|94541838|gb|ABF31887.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS9429]
 gi|94545716|gb|ABF35763.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS2096]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 45  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339

Query: 292 M 292
           +
Sbjct: 340 I 340



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875


>gi|50903082|gb|AAT86797.1| Carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS10394]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 45  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339

Query: 292 M 292
           +
Sbjct: 340 I 340



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 654 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875


>gi|71802385|gb|AAX71738.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS6180]
          Length = 1073

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 45  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 104

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 105 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 164

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 165 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 225 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 283

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 284 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 339

Query: 292 M 292
           +
Sbjct: 340 I 340



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 594 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 653

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 654 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 713

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 714 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 774 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 831 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 875


>gi|21904290|gb|AAM79169.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           MGAS315]
          Length = 1048

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 20  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 79

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 80  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 140 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 200 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 259 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 314

Query: 292 M 292
           +
Sbjct: 315 I 315



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 569 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 628

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 629 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 688

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 689 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 748

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 749 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 805

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 806 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 850


>gi|19748065|gb|AAL97546.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           MGAS8232]
          Length = 1072

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 44  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPT 103

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 104 LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 163

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 164 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 223

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 224 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 282

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 283 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 338

Query: 292 M 292
           +
Sbjct: 339 I 339



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 593 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 652

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 653 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 712

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 713 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 772

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 773 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 829

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 830 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 874


>gi|161761316|ref|YP_059980.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS10394]
 gi|60389500|sp|Q5XCR6|CARB_STRP6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|15674870|ref|NP_269044.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           M1 GAS]
 gi|71910456|ref|YP_282006.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS5005]
 gi|22095524|sp|Q9A0C6|CARB_STRP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|13622006|gb|AAK33765.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes M1
           GAS]
 gi|71853238|gb|AAZ51261.1| carbamoyl-phosphate synthase large chain [Streptococcus pyogenes
           MGAS5005]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|161485749|ref|NP_664366.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS315]
 gi|25452822|sp|Q8K7Y3|CARB_STRP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|161484702|ref|NP_607047.2| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           MGAS8232]
 gi|22095490|sp|P58941|CARB_STRP8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKIYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQSLSDAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|28896204|ref|NP_802554.1| carbamoyl phosphate synthase large subunit [Streptococcus pyogenes
           SSI-1]
 gi|28811455|dbj|BAC64387.1| putative carbamoylphosphate synthetase [Streptococcus pyogenes
           SSI-1]
          Length = 1058

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLIEYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SEGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|56808222|ref|ZP_00365996.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Streptococcus pyogenes M49 591]
          Length = 1023

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 KTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALQAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPAIMEHIER---ASVHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860


>gi|298252680|ref|ZP_06976474.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           5-1]
 gi|297533044|gb|EFH71928.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           5-1]
          Length = 1131

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++                    +D S +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      ILE   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P      LG  +   ++ +         ++  +++LIE+
Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   + D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|297243387|ref|ZP_06927320.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           AMD]
 gi|296888634|gb|EFH27373.1| carbamoylphosphate synthase large subunit [Gardnerella vaginalis
           AMD]
          Length = 1131

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++                    +D S +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      ILE   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P      LG  +   ++ +         ++  +++LIE+
Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   + D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|283783377|ref|YP_003374131.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           409-05]
 gi|283441375|gb|ADB13841.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           409-05]
          Length = 1131

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++                    +D S +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPELADATYIEPIDTSILERIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      ILE   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMDLGRAGILEKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P      LG  +   ++ +         ++  +++LIE+
Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   + D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDAKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPQTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|291456361|ref|ZP_06595751.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve
           DSM 20213]
 gi|291381638|gb|EFE89156.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium breve
           DSM 20213]
          Length = 1127

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S +
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSRI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSLEECDKIAEELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|168217337|ref|ZP_02642962.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens NCTC 8239]
 gi|182380614|gb|EDT78093.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens NCTC 8239]
          Length = 1067

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++   KPD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKEKPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      ++    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|115351222|ref|YP_773061.1| carbamoyl phosphate synthase large subunit [Burkholderia ambifaria
           AMMD]
 gi|170697947|ref|ZP_02889030.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171318236|ref|ZP_02907399.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria
           MEX-5]
 gi|115281210|gb|ABI86727.1| carbamoyl-phosphate synthase large subunit [Burkholderia ambifaria
           AMMD]
 gi|170137113|gb|EDT05358.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria
           IOP40-10]
 gi|171096580|gb|EDT41474.1| carbamoyl-phosphate synthase, large subunit [Burkholderia ambifaria
           MEX-5]
          Length = 1084

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +LE   +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  +  V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMAYTGGSGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEEEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|15837709|ref|NP_298397.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           9a5c]
 gi|22095537|sp|Q9PEC1|CARB_XYLFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|9106062|gb|AAF83917.1|AE003946_8 carbamoyl-phosphate synthase large chain [Xylella fastidiosa 9a5c]
          Length = 1080

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++A  KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +++    I      P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGITYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + GF+   +         D D S  L    L  +    ++             G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   +       +     
Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQKLVQQLGLRQPPNCTARTAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +     +       +S  +S  + P  +      +++R      QA+   G+
Sbjct: 767 IADREGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGL 826

Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F           V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873


>gi|18311554|ref|NP_563488.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           str. 13]
 gi|22095508|sp|Q8XHB3|CARB_CLOPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18146238|dbj|BAB82278.1| carbamoyl-phosphate synthetase catalytic subunit [Clostridium
           perfringens str. 13]
          Length = 1067

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++   KPD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKEKPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      ++    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|328956345|ref|YP_004373678.1| carbamoyl-phosphate synthase large subunit [Coriobacterium
           glomerans PW2]
 gi|328456669|gb|AEB07863.1| carbamoyl-phosphate synthase large subunit [Coriobacterium
           glomerans PW2]
          Length = 1107

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  ++ +                       +  V+A  +P     
Sbjct: 29  SGAQACKVLKEEGYEVILVNSNPATIMTDPGLADRTYVEPVTAEFIERVIARERPCALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  V+     +L+   +      + A     D+             +     
Sbjct: 89  TLGGQTGLNTAVELAESGVLDRWGVEMIGCDLAAIERGEDRRLFNEAMAEIGLPLARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++P       G  +   ++ +   + Q    +   ++L+E+
Sbjct: 149 AYSVDDAIEIAARVGYPCVLRPSYTLGGAGGGIAHDEEELREIVSQGLELSCAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   +     I     +     +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDAAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDIEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAVLEKVGVETGGSNVQFAVNPRDGRLIIIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 90/296 (30%), Gaps = 31/296 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+DAGF+   +         D D              V  V+   +PD     L G   
Sbjct: 600 ALQDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVMDVVDVERPDGVIVTLGGQTP 659

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++  +         P                 
Sbjct: 660 LKLAGALAASGVPILGTQPEAIDLAEDRERFSALLDELGIRYPKAGMATSCAQAEQVADR 719

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P +++P       G+++    + +   + +++  +    + ++++++G IE     +
Sbjct: 720 IGYPLLVRPSYVLGGRGMMIAYDGEHLGAYMREAARVSPDHPVYLDRFLEGAIESDVDAL 779

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++T +        +   +++       A+G RG
Sbjct: 780 SDGEQVYIGGILEHIEEAGIHSG---DSATCLPAFSFSDALIARLRQTTRRLALALGVRG 836

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           +    +        V+ +E N +   T     P ++   G    +    ++  ++ 
Sbjct: 837 LVNIQYAI--QGETVYVIEANPRASRT----VPFISKATGVPLAKCAARIMAGSTI 886


>gi|15615099|ref|NP_243402.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans
           C-125]
 gi|22095534|sp|Q9K9V9|CARB_BACHD RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|10175156|dbj|BAB06255.1| carbamoyl-phosphate synthetase (catalytic subunit) [Bacillus
           halodurans C-125]
          Length = 1062

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVILVNSNPATIMTDTTMADRVYIEPLTLEFVSRIIRMERPDGILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +   Y           +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNMAVELDQAGILKEYNVELLGTKLDSIQQAEDRDLFRALMKELNEPVPDSEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +++P       G  ++  ++ +   +     ++   Q L+E+ 
Sbjct: 150 HTLEEAYTFVERVGYPIIVRPAYTLGGTGGGLVYNEEDLVEIVTSGLKYSPVTQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGKDHAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNVQFALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 96/294 (32%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P+       G   
Sbjct: 580 AIKEAGYEAIIVNNNPETVSTDFSTSDKLYFEPLTVEDVMHIVNLEQPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   DK     V  +   P+  +             
Sbjct: 640 INLASELAARGVKIIGTALEDMDRAEDRDKFEQTLVELNIPQPLGDTATSIEEARQIAER 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G EL    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLNYMAHAVKVNPKHPVLIDRYLTGKELEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +P  + +++        + +   G+
Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSIAVYPPQTVPESLKQKLIERTIELARGLRIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
               F++      V+ LE+N       P ++ V+  P          G +  +L
Sbjct: 817 LNIQFVWHKDD--VYVLEVNPRSSRTVPFLSKVTGVPMANVATKVMLGKTLPQL 868


>gi|95929151|ref|ZP_01311895.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas
           acetoxidans DSM 684]
 gi|95134649|gb|EAT16304.1| carbamoyl-phosphate synthase, large subunit [Desulfuromonas
           acetoxidans DSM 684]
          Length = 1085

 Score = 64.9 bits (156), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+D G++V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKDEGYEVVLLNSNPATIMTDPDFADRTYVEPVTPAVLAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +          L+   +    + + A   + D+   KQ + S GV V  S  
Sbjct: 89  TLGGQTALNTAVAVAKDGTLDKFGVELIGAKLPAIEKAEDRTLFKQAMDSIGVAVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYDEAMVVIEEVGFPAIIRPSFTLGGTGGGIAYNREEYEAMAVAGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SVIGWKEYELEVMRDLADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVETGGSNIQFGINPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 90/290 (31%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++A   PD       G   
Sbjct: 599 ALHDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVENPDGVIVQFGGQTP 658

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ ++         P                 
Sbjct: 659 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQALLHKLDLKQPANGLARSFEEAETIAEQ 718

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + ++   + +   +  +   +    +LI++++D  IE+    +
Sbjct: 719 IGYPVVVRPSYVLGGRAMEIVYGIEQLRNYMKFAVQASPEHPILIDKFLDHAIEIDVDAL 778

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +           ++  + P  +  ++ +EV+R        +G  G
Sbjct: 779 ADGTDVVIGGIMQHIEEAGIHSG---DSACSLPPYSLAEELVEEVRRQTRALALELGVIG 835

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F        V+ +E+N +   T     P ++   G    ++   +
Sbjct: 836 LMNIQFAV--KDNVVYLIEVNPRASRTS----PFVSKATGRPLAKIAARL 879


>gi|257058535|ref|YP_003136423.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           8802]
 gi|256588701|gb|ACU99587.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           8802]
          Length = 1081

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N      M ++ + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDSSPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 40.2 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%)

Query: 22  CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58
           C +A  L DAG++   ++                         V  ++    P       
Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGVIIQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
            G       V     L          +          ++       +     I       
Sbjct: 642 GGQTPLKLAVPLQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGI 701

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P V++P        + ++  D+ +   ++ +        +LI++
Sbjct: 702 SRSYEESVAVASRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDK 761

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++   +   V     +    +     +       +S  ++  +    +   +   ++  
Sbjct: 762 FLEN-AIEVDVDALCDMTGKVVIGGIMEHIEQAGVHSGDSACSLPFTTLSPHVINTIRNW 820

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                 ++   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 821 TTHLANSLQVIGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872


>gi|218245501|ref|YP_002370872.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           8801]
 gi|218165979|gb|ACK64716.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           8801]
          Length = 1081

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNVAVALAKNGVLDEYNVELIGAKLPAIEKAEDRNLFKEAMAKIGVPVCPSGI 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N      M ++ + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANTLKEAQMIAEQIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDSSPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 40.2 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%)

Query: 22  CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58
           C +A  L DAG++   ++                         V  ++    P       
Sbjct: 582 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETENPVGVIIQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
            G       V     L          +          ++       +     I       
Sbjct: 642 GGQTPLKLAVPLQTYLDSPNCPVQTKIWGTSPDSIDTAEDRERFEKILHDLEIKQPANGI 701

Query: 114 ---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P V++P        + ++  D+ +   ++ +        +LI++
Sbjct: 702 SRSYEESVAVASRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMIYAVQVEPDHPILIDK 761

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++   +   V     +    +     +       +S  ++  +    +   +   ++  
Sbjct: 762 FLEN-AIEVDVDALCDMTGKVVIGGIMEHIEQAGVHSGDSACSLPFTTLSPHVINTIRNW 820

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                 ++   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 821 TTHLANSLQVIGLMNIQYAV--QGEQVYILEANPRASRT----VPYVSKATGRPLAKI 872


>gi|167761104|ref|ZP_02433231.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704]
 gi|167661338|gb|EDS05468.1| hypothetical protein CLOSCI_03502 [Clostridium scindens ATCC 35704]
          Length = 1075

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 102/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     ILE   +      + A     D++  K+ + + G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAKAGILEKYNVQVIGVQVNAIERGEDRIEFKKSMDALGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYTVEEALAIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   + +         +       ++  +        I  +  K +Q  
Sbjct: 209 SILGWEELELEIVRDADNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIVVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 89/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D S  L                 KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYNKEKPLGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T   ++  A   D  R         +P           +     
Sbjct: 641 LNLASELEKNGVKILGTSPSVIDLAEDRDLFREMMEKLEIPMPESGMATTVEEALAIARE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMEGYMKAAVGVTPDRPILIDRFLN---HALECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+    +      +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISEENVRTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     + KV+ LE N +   T     P ++         L   ++
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862


>gi|108762853|ref|YP_634088.1| D-ala D-ala ligase domain-containing protein [Myxococcus xanthus DK
           1622]
 gi|108466733|gb|ABF91918.1| D-ala D-ala ligase domain protein [Myxococcus xanthus DK 1622]
          Length = 376

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 112/305 (36%), Gaps = 26/305 (8%)

Query: 12  REVSLSSGKACASALEDAG--FKVSQIDVDR-SVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           R VS     + A AL       +   I+ DR      L   +PDL  N+      +    
Sbjct: 45  RVVS-----SMADALNRGDTLAEPLAIEGDRLDFMDTLRRCQPDLVVNLCESLAADSRGE 99

Query: 69  QAILELLEI---PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
            AI  LL++    YT S  L+  L++ K ++K+V+++ GV   P  +V R        + 
Sbjct: 100 MAIPCLLDVLGLAYTGSSALSLGLALHKPKAKEVLTARGVSTPPFHVVERLEDALAVDLP 159

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCG--- 180
            P ++KP +  +S+G+            +    +         L+EQ++ G E+      
Sbjct: 160 WPLIVKPAREDASMGVTSESVVHERAALVRACDAVLREFHQPALVEQFIPGREIYVPLLG 219

Query: 181 ---------VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                              +     S    +E   +    T     ++  ++     ++A
Sbjct: 220 NRPRQALPLTEIVFGRTFEDRPNIVSYNAKWEAASAEYRDTTSGLCRLDANLESRCVQVA 279

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             A  A+ C+   R D    P     + ++IN    + P + F + A  AG  +  L   
Sbjct: 280 LEAFAALDCQDYGRVDLRVSPE-GVPYVIDINPNCDLHPSAGFAKAALAAGMDYPALASR 338

Query: 292 MVEDA 296
           +VE A
Sbjct: 339 LVEVA 343


>gi|315637951|ref|ZP_07893137.1| carbamoyl-phosphate synthase, large subunit [Campylobacter
           upsaliensis JV21]
 gi|315481986|gb|EFU72604.1| carbamoyl-phosphate synthase, large subunit [Campylobacter
           upsaliensis JV21]
          Length = 1091

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 82/304 (26%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D               S+  +L   K D    
Sbjct: 29  SGTQAAKTLKELGYRVILINSNPATIMTDPEFADATYIEPITKESILSILKKEKVDAILP 88

Query: 57  VLHGNF--------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + G           E    +     ++    +   +         +         +P  
Sbjct: 89  TMGGQVALNVAMEVFESEEFKKDFSFVKFLGANPEAIKKGEDRQIFKECMKKIGMDLPKS 148

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    + +   I  P +I+        G  V+            + S +   ++LI
Sbjct: 149 MYAYDYEEALKAVDEIGFPLMIRASYTLGGAGSGVVYNLDEFKDLATAALSLSPIHEILI 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G +     +    LD   I     +     +      +          +      
Sbjct: 209 EESLLGWKEYEMEVIRDRLDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQAMRN 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 ASFAILREIGVDTGGSNVQFAIHPQNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKV 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATLL 328



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 83/262 (31%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L         +      L+ D
Sbjct: 621 FEPIDF-EHLRAVIEREKPDGV--IVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDLAED 677

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +      + G+      +       +     I  P +++P        + V+  +  +
Sbjct: 678 RKKFALFCENLGINQPRNATATKVEEAVLKASEIGYPVLVRPSYVLGGRAMRVVYDESEL 737

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++ + +    +LI++++D   E+    + D         +   +           
Sbjct: 738 RLYMQEAVAVSERSPVLIDEFLDNATEIDVDAISDGKEVYVAGIMEHIEEAGIHSG---D 794

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I     + + +        +G +G+    F       K+F +E+N +   T
Sbjct: 795 SACSLPPCNIDEKTQELICQKTTEIALNLGVKGLLNIQFALHE--NKLFMIEVNPRASRT 852

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 853 ----VPFVSKATGVPLAKVATR 870


>gi|284046365|ref|YP_003396705.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
 gi|283950586|gb|ADB53330.1| D-alanine--D-alanine ligase [Conexibacter woesei DSM 14684]
          Length = 439

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/206 (20%), Positives = 69/206 (33%), Gaps = 53/206 (25%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD-------- 52
           + V+ GG S E +VS+ + +   + L      V  + + +           D        
Sbjct: 9   VGVVFGGPSVEHDVSIITAQQAMAVL-SERHTVVPLYIGKDGRWWTGEELRDVSAFTQAP 67

Query: 53  -----------------------------------LAFNVLHGNFGEDGLVQAILELLEI 77
                                              +  N +HG  GEDG +   LEL  +
Sbjct: 68  PRGARAVELRLGAADGPFVEPSTSRLRGDRALAISVVLNAIHGTGGEDGALLGALELSGV 127

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---------QHLISPPY 128
           P+   G+ A A+ MDK  +K V+   G+ V P   + R   +             +  P 
Sbjct: 128 PHAGRGVAAFAVGMDKHLAKTVLREAGIDVLPHRRIERGEWEHDRAAVLRSVADEVPLPC 187

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDL 154
           V+KP   GSS+G+        +   L
Sbjct: 188 VVKPATLGSSIGVARCADPAEVEEAL 213



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 8/82 (9%)

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSR--KVFWLEINVQPGMTPV 271
           PA I  ++ + V+  A  AH+A+   G+ R DF    DP     ++   E N  PG    
Sbjct: 333 PADIAPELRERVRAEAAKAHRALRVAGVVRYDFFVLPDPDGGAERICVNEPNTVPG---- 388

Query: 272 SIFPEMAAYAGYSFRELLLWMV 293
           S    +    G +F +LL  ++
Sbjct: 389 SFAFYLFEPEGLAFPDLLDELL 410


>gi|157962892|ref|YP_001502926.1| carbamoyl phosphate synthase large subunit [Shewanella pealeana
           ATCC 700345]
 gi|157847892|gb|ABV88391.1| carbamoyl-phosphate synthase, large subunit [Shewanella pealeana
           ATCC 700345]
          Length = 1073

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + + S G+    +  
Sbjct: 89  TMGGQTALNCALELESRGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHNMDEARAVQAEVGYPCIIRPSFTMGGSGGGIAYNKEEFEDICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTFEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARDLEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLGMMQPENDTVTTVEGAVISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  DI   ++         +G  G
Sbjct: 767 CDGETVVIGSIMEHIEQAG---VHSGDSGCSLPPYSLSQDIQDRMREQVGKLAMELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|330685486|gb|EGG97139.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           epidermidis VCU121]
          Length = 1057

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      L    +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMNDLDVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMSIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  + ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMQAI 860


>gi|242373490|ref|ZP_04819064.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348853|gb|EES40455.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 1057

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      L    +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDREMFRTLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  + +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFEFKEQVGYPLIVRPAFTMGGTGGGICYNDADLKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSLNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLARHGVQILGTSLEDLNRAEDRKEFEALLRQIYVPQPQGKTSTSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDQELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  + ++       + +   G+
Sbjct: 760 DGDTVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQEEIETLEDYTIKLAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMRSI 860


>gi|239636317|ref|ZP_04677319.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
 gi|239597672|gb|EEQ80167.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus warneri
           L37603]
          Length = 1057

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      L    +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLAANNVKLLGTELESIQQAEDRELFRTLMNDLDVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D  +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFKFKEEVGYPLIVRPAFTMGGTGGGICYNDDDLKEVVTNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMSIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVQILGTSLEDLNRAEDRKEFEALLHTIDVPQPQGKTATSPKEALENARN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNDKELENYMTQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +  + ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEEIETLEDYTIRLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRSSRT----VPFLSKITDIQMAQLAMQAI 860


>gi|237740186|ref|ZP_04570667.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           2_1_31]
 gi|229422203|gb|EEO37250.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           2_1_31]
          Length = 1061

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 33  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 92

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         +L+   +    + + +   + D+   R      +  VP    +
Sbjct: 93  LGGQVALNLAVSLHESGVLDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSAIV 152

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 153 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 212

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 213 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 271

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 272 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 327

Query: 292 M 292
           +
Sbjct: 328 I 328



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 583 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 643 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 703 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 763 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 820 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 863


>gi|237743991|ref|ZP_04574472.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 7_1]
 gi|229433022|gb|EEO43234.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. 7_1]
          Length = 1058

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVALYESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q LIE+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
              A++  G++   I+ +                       V  +L   KP        G
Sbjct: 577 AIKAIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  +    + +A   D+     +      P+  +       + +
Sbjct: 637 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVENALKN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+   
Sbjct: 697 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D         +   +       +S  + +   P  +     + +        + +  
Sbjct: 757 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+      +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 814 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|126658369|ref|ZP_01729518.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110]
 gi|126620301|gb|EAZ91021.1| carbamoyl-phosphate synthase large subunit [Cyanothece sp. CCY0110]
          Length = 1081

 Score = 64.9 bits (156), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A  ++ D+   K  ++  GVPVCPS +
Sbjct: 89  TMGGQTALNVAVSLAKSGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +  + + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLEEAQVIGKEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.1 bits (89), Expect = 0.85,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++    P        G       V     L          +          ++ 
Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSSECPVQTKIWGTSPDSIDTAED 681

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150
                 +     I      +   +         I  P V++P        + ++  D+ +
Sbjct: 682 RERFEKILHDLDIKQPPNGISRSYEESLRVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++   +   V          +     +       +S  +
Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLEN-AIEVDVDALCDTTGKVVIGGIMEHIEQAGVHSGDS 800

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  V    +   + + ++        ++   G+    +       +V+ LE N +   T 
Sbjct: 801 ACSVPFTTLSNSVIETIRTWTAALANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857

Query: 271 VSIFPEMAAYAGYSFREL 288
               P ++   G    ++
Sbjct: 858 ---VPYVSKATGRPLAKI 872


>gi|238499611|ref|XP_002381040.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357]
 gi|220692793|gb|EED49139.1| hypothetical protein AFLA_092200 [Aspergillus flavus NRRL3357]
          Length = 100

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 23/90 (25%), Positives = 37/90 (41%), Gaps = 3/90 (3%)

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTP- 270
             P  +     K   ++A  A +++GCR   R D  F  D        LE+N   G+ P 
Sbjct: 6   HDPGLMAEPQVKVACQVALDAWRSLGCRDAGRVDIRFSSDEHDAVPNVLELNPISGLLPG 65

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            S  P  A   G  ++ LL  +++ A   +
Sbjct: 66  HSPLPSSAEENGLPYKRLLAAIIQSALTRK 95


>gi|70726712|ref|YP_253626.1| carbamoyl phosphate synthase large subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|82592665|sp|Q4L5Q5|CARB_STAHJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|68447436|dbj|BAE05020.1| carbamoyl-phosphate synthase large chain [Staphylococcus
           haemolyticus JCSC1435]
          Length = 1057

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +Q      LE   +    + + +   + D+   + +++   VPV  S  +
Sbjct: 90  LGGQTGLNMAIQLHDSGVLEANNVKLLGTELKSIQQAEDRELFRSLMNDLNVPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    +  +  P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTVEQAFAFKDEVGYPLIVRPAFTMGGTGGGICYNDEELKEVVSNGLHYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 92/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +++   
Sbjct: 640 INLADKLAKHGVKILGTTLENLNRAEDRKEFEALLHTIDVPQPKGKTATSPKEALENARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + Q+   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVNSDAELENYMEQAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +    ++       + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLSQEDIDTLEDYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVIAHDG--VYVLEVNPRASRT----VPFLSKITDIQMAQLAMQAI 860


>gi|88857846|ref|ZP_01132488.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas
           tunicata D2]
 gi|88819463|gb|EAR29276.1| carbamoyl-phosphate synthase large subunit [Pseudoalteromonas
           tunicata D2]
          Length = 1072

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVEKIIEKEKPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D   + +L    +    +   A   + D+ R    + + G+    +  
Sbjct: 89  TMGGQTALNCALDLDRRGVLAKHGVELIGATADAIDKAEDRSRFDVAMKAIGLETPRAEI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D    I  P +I+P       G  V    +       +    +   +LLI++
Sbjct: 149 ARSMESARDIVTRIGFPCIIRPSFTMGGTGGGVAYNQEEFEEICERGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 86/280 (30%), Gaps = 32/280 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      M     
Sbjct: 647 LKLARALEANGVPVIGTSPDAIDRAEDRERFQQLVERLGLLQPHNATVTSTEEAMAKSAE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +   + ++   ++   +L++ ++D  IE+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEDDLRRYMTEAVQASNEAPVLLDHFLDDAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +  +I   ++         +G  G
Sbjct: 767 CDGEQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAEIQDRMRDQVTRMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +  + F        V+ +E+N       P ++  +  P  
Sbjct: 824 LMNTQFAV--KDGDVYLIEVNPRAARTVPFVSKATSVPIA 861


>gi|256027395|ref|ZP_05441229.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp. D11]
 gi|289765359|ref|ZP_06524737.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. D11]
 gi|289716914|gb|EFD80926.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp. D11]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q LIE+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/293 (11%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
              A++  G++   I+ +                       V  +L   KP        G
Sbjct: 577 AIKAIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  +    + +A   D+     +      P+  +       + +
Sbjct: 637 QTAINLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+   
Sbjct: 697 ANEIGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D         +   +       +S  + +   P  +     + +        + +  
Sbjct: 757 AISDGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLAKGLKV 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+      +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 814 KGLINIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|241762246|ref|ZP_04760328.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260753826|ref|YP_003226719.1| carbamoyl phosphate synthase large subunit [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241373293|gb|EER62912.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258553189|gb|ACV76135.1| carbamoyl-phosphate synthase, large subunit [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 1110

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +          LE        +   A   + D+++ +Q +   G+    S  
Sbjct: 89  TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P +I+P       G  V    +     +    S +   ++LIE+
Sbjct: 149 AHSLEEALDGLDYVGLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEYEMEVVRDRHDNCIIICSIENIDPMGVHTGDSITVAPALTMTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59
           ALE AG++   +         D D S  L    L  +    +LH                
Sbjct: 619 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 678

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G        +     + I  T    +  A   ++  +         P           + 
Sbjct: 679 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 738

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +I+P        + +I     +   +  +   +    +LI+QY+   + T 
Sbjct: 739 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 796

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +   +     +             +S  ++  + P  +P  I +E++       +A+ 
Sbjct: 797 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 856

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    F       KV+ +E+N +   T     P +A   G    ++   
Sbjct: 857 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 902


>gi|291287333|ref|YP_003504149.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio
           acetiphilus DSM 12809]
 gi|290884493|gb|ADD68193.1| carbamoyl-phosphate synthase, large subunit [Denitrovibrio
           acetiphilus DSM 12809]
          Length = 1073

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  I+ + +                        +L   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILINSNPATIMTDPEIADATYIEPLTVEMAEKILEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +   +      LE   +    + I A   + D+   KQ ++  G+ +  S +
Sbjct: 89  TVGGQTALNLAKEINDAGLLEKYNVELIGAKIEAIDKAEDRELFKQAMTKIGLHLPASAV 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +D    I  P +I+P       G  V    +     +      +   ++L+E+
Sbjct: 149 CNTYQDALDCIDEIGFPAIIRPSFTLGGTGGNVAYNMEEYKEYVEWGLEASPVTEILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +  +  +      +          +  +     
Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENVDAMGVHTGDSITVAPAQTLTDKEYQELRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +     +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVIREIGVDTGGSNVQFAVNPANGDQIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 33/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63
           ALE+ GF+   +         D D S  L            ++    PD       G   
Sbjct: 586 ALEEMGFETIMVNCNPETVSTDYDTSDRLYFEPLTREHVLNIVQKENPDGVIVQFGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ ++         P                 
Sbjct: 646 LKLAVPLERAGVPILGTSPDSIDCAEDRERFKALMEKLDIMQPANGIAKAADEAYKIADQ 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++   +S+   ++ +   +    +LI++Y+    E+    +
Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYDRESLENYMVYAVKASEDHPVLIDKYLLHATEVDVDSI 765

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    V    +   +    E    S +S   +P +   D +  E+        + +   
Sbjct: 766 SDGETCVIGSIMQHIE----EAGVHSGDSACSIPTRTINDAVKAELMTKTKQIAKELNVV 821

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+    +       +++ LE+N +   T     P ++   G    ++   ++  A
Sbjct: 822 GLMNIQYAI--KDDQIYMLEVNPRASRT----IPFVSKSIGVPLAKMAAKVMAGA 870


>gi|121998554|ref|YP_001003341.1| carbamoyl-phosphate synthase large subunit [Halorhodospira
           halophila SL1]
 gi|121589959|gb|ABM62539.1| carbamoyl-phosphate synthase large subunit [Halorhodospira
           halophila SL1]
          Length = 1073

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPETADAVYIEPVEWQTVSRIIEREQPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
            + G         +     L        G    A+   + R     +   + +       
Sbjct: 89  TMGGQTALNCALDLVKHGVLERYGVEMIGASREAIDKAEEREAFRAAMARIGLETPRAEL 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +Q  +  P +I+P       G  +    +     + +    ++ +++L+E+
Sbjct: 149 ARSMAEAQAAQARMGFPVIIRPSYTLGGSGGGIAYNREEFNEIVERGLDLSYTNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRHDNAIIVCSIENLDPMGVHTGDSTTIAPAQTLTDKEYQLMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFAINPDNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 93/288 (32%), Gaps = 31/288 (10%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L + G++   +         D D              V  V+   +PD       G    
Sbjct: 588 LREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVETEQPDGVVVQYGGQTPL 647

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
               +       I  T    +  A   ++ +          P   +       +     I
Sbjct: 648 KLARELEAAGTPIIGTSPDSIDLAEDRERFQELIGRIDLMQPPNRTARTETEALQLAAEI 707

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMG 183
             P V++P        + ++ ++  +   + ++   +H   +L+++++D  +E+    + 
Sbjct: 708 GYPLVVRPSYVLGGRAMEIVYEESELRQYMNEAVRVSHNSPVLLDRFLDDAVEVDVDAVS 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +  D+   ++    L  + +G  G+
Sbjct: 768 DGDQVVIGGIMQHIEQAG---VHSGDSACSIPPYTLGQDVQDRIREQVRLLARELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F      +++F LE+N +   T     P ++   G    ++   
Sbjct: 825 MNVQFAI--QGQRIFLLEVNPRASRT----VPYVSKACGVPLAKVAAR 866


>gi|168703983|ref|ZP_02736260.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Gemmata obscuriglobus UQM 2246]
          Length = 1114

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYTVVLVNSNPATIMTDPETADRTYIEPITWEVVEKIIAAERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       L    +    +       + D+ R K  V   GV V  S++
Sbjct: 89  TLGGQTALNTAMDLFKRGVLAKYGVEMIGADADVIDKAEDRQRFKDAVLKIGVAVPKSVV 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     M +   I  P V++P       G  +          +    + +   ++L+E+
Sbjct: 149 VHTLEEAMRALDEIGLPCVLRPSFTMGGSGGGIAYNRDEYRDIITHGLALSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +   + 
Sbjct: 209 SVIGWKEYELEVMRDKADNVVIICSIENLDPMGVHTGDSITVAPAQTLSDKEYQRMRDKA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 KDIIREIGVETGGSNIQFAINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 98/296 (33%), Gaps = 40/296 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL   G++V  +         D D S  L    L P+   N +H     +G++       
Sbjct: 612 ALRARGYEVIMVNSNPETVSTDYDTSDHLFFEPLTPEDVIN-IHERMKPEGVIVQFGGQT 670

Query: 72  -------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQH 122
                  L+ + +P   + + +  ++ ++ R  ++V+  G+    +              
Sbjct: 671 PLNLATPLQSMGVPIIGTSVDSIDIAENRERFARLVTDLGLLQPANGTAVDEAQALRVAR 730

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI--EQYVDGIELTCG 180
            I  P +++P        + ++  +  +   + +       D+ ++  +   +  E+   
Sbjct: 731 KIGFPILVRPSFVLGGRDMKIVYNEDELTAYIRRVEPDLSRDRPVLIDQFLENATEVDVD 790

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  V    +   +           ++  + P  +P  +  E++        A+  
Sbjct: 791 CLSDGTRTVIGGVMQHIEEAGIHSG---DSACVIPPYSLPATVINEIKVQTRKLAAALNV 847

Query: 241 RGISRSDFLFDPLSR--------KVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G+    F    +          KV+ LE N +   T     P ++   G     L
Sbjct: 848 KGLMNIQFAVAGIRGGVTATEAAKVYILEANPRASRT----IPFVSKATGVPLARL 899


>gi|323705536|ref|ZP_08117110.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323535013|gb|EGB24790.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 1073

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G KV  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKSLKEEGLKVILVNNNPATIMTDTEIADVVYIENPEVDVLEAIIDKERPDGILG 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +         I++   +    + I +   + D+   + K       +    +
Sbjct: 89  TIGGQTGLNVVVKLKESGIIDKYNLKVLGTSIESIKTAEDRELFKKKMEEIGEPIAESAT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +++P       G  +   +  + + +      +   ++LIE+
Sbjct: 149 VNNVDDAIKFAEKCGYPLIVRPAFTLGGTGGGIANNEDELKVIVDLGLKKSMAHEVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGYKEIEYEVMRDSNDNCITICNMENFDPVGVHTGDSIVVAPSQTLTDYE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIKALKIEGGCNVQFALDPNSHQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 89/290 (30%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  G K   I         D D              V  ++   KP     +  G   
Sbjct: 581 ALKSKGIKSIIINNNPETVSTDFDTGDRLYFEPLTLEDVLNIIEKEKPLGVLVMFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  +   +K        +   P     L      D    
Sbjct: 641 INLAQGLSDNGVNILGTSFESIDDSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALT 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +  +   Q I   +  +   + G  +LI++Y++G E+    + 
Sbjct: 701 IGFPLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAMKVSPGKPVLIDKYIEGREVEVDAIS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  + PA+         +         A+  +G
Sbjct: 761 DGTDVLI----PGIMEHIERAGVHSGDSFSMYPARNLSDHEISTIVEYTKKISCALKVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+       V+ LE+N +   T     P ++   G    ++ + +
Sbjct: 817 LINIQFVV--KDGVVYVLEVNPRASRT----VPVISKATGVPMIDIAVKI 860


>gi|239627633|ref|ZP_04670664.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239517779|gb|EEQ57645.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 1072

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 586 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   ++        +   P   ++        + H 
Sbjct: 646 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDEILEQCNIPRPAGHTVFTAEEAKKAAHE 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 706 LGYPVLVRPSYVLGGQGMQIAISDEDIDEFIGIINMIAQEHPILVDKYIMGKEIEVDAIC 765

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +    +   +        S      +   +  +D    +        +A+  +G+
Sbjct: 766 DGTDILIPGIMQHIERTGIHSGDSISVYPAMDITQHNIDT---IVDYTEKLARALHVKGM 822

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 823 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 866



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 97/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGVEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  ++       +   +    +  L    + D+   K+ +      V     +
Sbjct: 90  LGGQAGLNLAMELEDAGFFKEHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  +    +     L      +   Q+L+E+ 
Sbjct: 150 EDVKHGLEIAAQIGYPVVLRPAYTLGGSGGGIAANPEQCAEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341


>gi|229061492|ref|ZP_04198836.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH603]
 gi|228717726|gb|EEL69376.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH603]
          Length = 1018

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGLPMANIATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|154174995|ref|YP_001407544.1| carbamoyl phosphate synthase large subunit [Campylobacter curvus
           525.92]
 gi|112803772|gb|EAU01116.1| carbamoyl-phosphate synthase, large subunit [Campylobacter curvus
           525.92]
          Length = 1087

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 86/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  I         D D            +S+  ++     D    
Sbjct: 29  SGTQAAKTLKELGYRVVLINSNPATIMTDPDFADATYIEPITTQSIERIIKKECVDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    +  +Q   + L       G    A+   + R     +   + +         
Sbjct: 89  TMGGQVALNVAMQLYEQNLLGDVKFLGANPEAIKKGEDRQIFKATMQRIGMDLPESRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +I+        G  V                 +   ++LIE+ +
Sbjct: 149 NFDEAIFAANEIGFPLIIRASYTLGGAGSGVAYNMDEFRELAAAGLDASPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQAMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P S ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPNSGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 87/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ H +PD    ++H            L +       +      ++ D
Sbjct: 617 FEPIDF-EHVRSVIEHERPDGV--IVHFGGQTPLKFAKRLVVAGAKIIGTSARTIDIAED 673

Query: 93  KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + +S+ G+      +       +     I  P +++P        +  +  +  +
Sbjct: 674 RKKFSEFISNLGIKQPTNDTATSEDEALKKAAAIGYPVLVRPSYVLGGRAMRRVHSEAEL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            + + ++   ++   +L++++  D  EL    + D         +   +           
Sbjct: 734 KVYMNEAVKVSNNSPVLLDKFLQDATELDVDAISDGKDVYIGAIMEHIEEAGIHSG---D 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  +V+         +G  G+    F       +++ +E+N +   T
Sbjct: 791 SACILPPISLSPEMIAKVEAQTRDIALNLGVVGLMNIQFAI--YENELYMIEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 849 ----VPFVSKATGVPMAKVATR 866


>gi|116747460|ref|YP_844147.1| carbamoyl phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
 gi|116696524|gb|ABK15712.1| carbamoyl-phosphate synthase large subunit [Syntrophobacter
           fumaroxidans MPOB]
          Length = 1080

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  I+ +                      +V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEIVLINSNPATIMTDPETADRTYIEPITPEAVAKVIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V+     +LE   +    + +     + D+   +  +   G+ V  S  
Sbjct: 89  TLGGQTALNVAVRVAETGVLERFGVALIGASVEVIKKAEDRELFRDAMKRIGLRVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  V    + +          +    +++E+
Sbjct: 149 ARSMSEVESIAREIGFPIIVRPSFTLGGTGGGVAYNREELKELAQSGLDASFIHTVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +    +D   I     +  +  +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDCMDNVVIICSIENMDAMGVHTGDSITVAPAQTLTDREYQLLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAILREIGVETGGSNVQFAINPADGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 85/253 (33%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +L   KP        G    +  V        I  T    +  A    + +    
Sbjct: 625 EDVLHILDTEKPKGVIVQFGGQTPLNLSVPLEKAGARILGTSPDAIDRAEDRKRFQKLLQ 684

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   +    R   ++   I  P V++P        + ++     +   +  +  
Sbjct: 685 KLGLKQPRNATAFTLREAAEAAGRIGYPVVVRPSYVLGGRAMEIVFDAAMLESFMKTAVH 744

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            + G  +LI+Q+  D +E+    + D ++ V    +   +           ++  + P  
Sbjct: 745 VSPGHPILIDQFLEDAVEIDVDAISDGTVTVVGGIMEHIEQAGIHSG---DSACVLPPMS 801

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I   I +E++R   L  + +G  G+    F     + ++F LE+N +   T     P ++
Sbjct: 802 ISRSIQEEIRRQTRLLAKELGVVGLMNIQFAL--QNGEIFILEVNPRASRT----IPFVS 855

Query: 279 AYAGYSFRELLLW 291
              G+   +L   
Sbjct: 856 KAIGFPLAKLATR 868


>gi|319787363|ref|YP_004146838.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317465875|gb|ADV27607.1| carbamoyl-phosphate synthase, large subunit [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 1080

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPDTADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             + +    I      P +I+P       G  +    +     + +    +   ++L+E+
Sbjct: 149 ARSFEQAVEIQAKVGYPTIIRPSFTLGGSGGGIAYNREEFEEIVKRGLELSPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +  + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.0 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   +       +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVEKLGLKQPPNRTARTADEALALARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDL 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +     +       +S  +S  + P  +      E++R      + +   G+
Sbjct: 767 IADAEGNTLIGGVMEHIEEAGVHSGDSSCSLPPYSLSQATQAELRRQVVELAKGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQTNEEGEDTVYLLEVNPRASRT----VPFVSKATGVQLAKIAAR 873


>gi|242309114|ref|ZP_04808269.1| carbamoyl phosphate synthase large subunit [Helicobacter pullorum
           MIT 98-5489]
 gi|239524155|gb|EEQ64021.1| carbamoyl phosphate synthase large subunit [Helicobacter pullorum
           MIT 98-5489]
          Length = 1088

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 87/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSV-GLVLAHLKPDLAFN 56
           SG   A  L++ G+KV  I+                    +   +   ++   K D    
Sbjct: 33  SGTQAAKTLKELGYKVVLINSNPATIMTDPEFADRTYIEPITEEIVADIIKKEKVDAILP 92

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    +  +    + +       G    A+   + R     +   + +         
Sbjct: 93  TMGGQTALNIAMSMYEKGMLKGVQFLGAKPEAIKKGEDRQAFKEAMLKIGMDLPKSCYAY 152

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +  +++   I  P +I+     +  G  V                 +  +++LIE+ +
Sbjct: 153 TLQEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKALAQNGLEVSPINEILIEESL 212

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 213 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 272

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 273 ILREIGVDTGGSNVQFAINPQNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 328



 Score = 42.9 bits (99), Expect = 0.052,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 93/265 (35%), Gaps = 17/265 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  RS   V+   KPD    ++H        +   L  +      +    
Sbjct: 615 DTLYFEPITFECVRS---VIEREKPDGI--IVHFGGQTPLKLAKKLTTIGANIIGTSAKT 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +  + V   G+      +       +     I  P +++P        + ++
Sbjct: 670 IDIAEDREKFAKFVEENGLLQPKNGTAYTKEEAIGIAQNIGFPVLVRPSYVLGGRAMRIV 729

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                +   + ++ S +    +LI+++++       +  D   D  ++ +     +  E 
Sbjct: 730 YNVAELQNYMSEAVSVSEDSPVLIDKFLNN---ALELDVDIICDGRDVYIAGIMQHIEEA 786

Query: 205 KYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              S +S   +P   I  +  KE++       + +G  G+  + +     +  ++ +E+N
Sbjct: 787 GIHSGDSACSIPTISISKEKIKEIEETTAKIARNLGVIGLMNTQYAIFEDT--LYLIEVN 844

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
            +   T     P ++   G    ++
Sbjct: 845 PRASRT----VPFVSKATGIPLAKV 865


>gi|85860899|ref|YP_463101.1| carbamoyl phosphate synthase large subunit [Syntrophus
           aciditrophicus SB]
 gi|85723990|gb|ABC78933.1| carbamoyl-phosphate synthase large chain [Syntrophus aciditrophicus
           SB]
          Length = 1069

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  I+ +                      +V  ++A  +PD   +
Sbjct: 29  SGTQACKALREEGYSVVLINSNPATIMTDPETADRTYIEPITPEAVEKIIARERPDALLS 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  V       LE   +    + +     + D+   R         VP    
Sbjct: 89  TLGGQTGLNTAVAVAESGLLERYGVEMIGASLPVIHKAEDRELFRRAMESIGLRVPRSGF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +++P       G  V    + +          +   ++++E+
Sbjct: 149 ARTMEEVLTIAEEIGFPVIVRPSFTLGGTGSGVAYNREELVEQARAGLEASMIHEIMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
              G +     +     D   I     +     +      +          +        
Sbjct: 209 SALGWKEYELEVMRDRADNVVIICSIENLDPMGVHTGESITVAPAQTLTDAEYQHMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAIMREIGVETGGSNVQFAVHPETGEMIVIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.9 bits (99), Expect = 0.061,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP+       G   
Sbjct: 583 ALREEGYESLMVNSNPETVSTDYDTSDKLFFEPVTLEDVLHIIECEKPEGVIVQFGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +          +I  T    +  A    + +      S   PV  ++      +++   
Sbjct: 643 LNLAKGLEAAGAKILGTSPDSIDRAEDRKRFQEIVDKLSLNQPVNATVTDVAGALEAAEH 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++    S+   + ++   +    +LI+Q+++       V  
Sbjct: 703 IGYPVLVRPSYVLGGRSMEIVYDADSLSQFMERALKVSPDHPILIDQFLED---AIEVDV 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D TE  V     +  E    S +S  VLP     + +  +         Q +   G
Sbjct: 760 DAISDGTETVVAGIMEHIEEAGIHSGDSACVLPTMSFSEDFLGLIESQTERIAQELRVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +        ++ LE+N +   T     P ++   G    +L   
Sbjct: 820 LMNIQYAV--KEGILYVLEVNPRASRT----VPFVSKAIGVPLAKLATK 862


>gi|256846778|ref|ZP_05552233.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_36A2]
 gi|256717744|gb|EEU31302.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_36A2]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +        + +  +G+
Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|237740837|ref|ZP_04571318.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           4_1_13]
 gi|229431134|gb|EEO41346.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           4_1_13]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +        + +  +G+
Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|254478598|ref|ZP_05091971.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium
           pacificum DSM 12653]
 gi|214035452|gb|EEB76153.1| carbamoyl-phosphate synthase, large subunit [Carboxydibrachium
           pacificum DSM 12653]
          Length = 1072

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  +         D D              V  ++A  +PD    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKIIAKERPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESIT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMAQEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPAQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY 
Sbjct: 268 SIKIIRALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/286 (15%), Positives = 92/286 (32%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG K   I         D D              +  +    KP     +  G   
Sbjct: 580 ALKEAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDILNIYEKEKPLGVMVMFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  T    +  +   +K        +   P     L      D    
Sbjct: 640 INLTEELVKNEVKILGTSFKSIDISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        +  +   Q +   +  ++  + G  +LI++Y+DG E+    + 
Sbjct: 700 LGFPLLVRPSYVIGGQSMEKVNTLQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + PA+   +     +        +A+  +G
Sbjct: 760 DGECVLI----PGIMEHIERTGVHSGDSFSIYPARNLTEREINTIIEYTEKISKALNVKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        V+ LE+N +   T     P M+   G    +L
Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|167587478|ref|ZP_02379866.1| carbamoyl phosphate synthase large subunit [Burkholderia ubonensis
           Bu]
          Length = 854

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +LE   +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGV 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  +  V+   M +      P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICRRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/274 (11%), Positives = 83/274 (30%), Gaps = 34/274 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKATVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINV 264
           +   G+    F               ++ LE+N 
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNP 854


>gi|21241014|ref|NP_640596.1| D-alanine-D-alanine ligase [Xanthomonas axonopodis pv. citri str.
          306]
 gi|21106303|gb|AAM35132.1| D-alanine-D-alanine ligase [Xanthomonas axonopodis pv. citri str.
          306]
          Length = 75

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 14/39 (35%), Positives = 22/39 (56%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39
          + ++ GG S+E EVSL S +    AL+   F+   I +D
Sbjct: 6  VGLIFGGKSAEHEVSLQSARDILDALDPRRFEPVLIGID 44


>gi|258623841|ref|ZP_05718795.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603]
 gi|258583830|gb|EEW08625.1| carbamoyl-phosphate synthase large subunit [Vibrio mimicus VM603]
          Length = 1076

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALALEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +M+  + +      P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AKSMEEAYKVLDMVGFPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 647 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 767 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 866


>gi|255281292|ref|ZP_05345847.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
 gi|255268249|gb|EET61454.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
          Length = 1075

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALKKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIQKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K+ +++ G+ +  S  
Sbjct: 89  NLGGQSGLNLCAELYKAGILDKYGVKVIGVQVDAIERGEDRIEFKKAMNALGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADNLGYPVVLRPAYTMGGAGGGLVYNREELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   + +         +     +       +  +   I  +  K +Q  
Sbjct: 209 SIIGWEELELEVVRDADNNMITVCFIENIDPMGVHTGDSFCSAPM-LTISEECQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 43.3 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D+ R         +P     +     +     
Sbjct: 641 LNLAADLEKNGVKILGTSPSVIDLAEDRDQFREMMEKLEIPMPESGMAVNVEEALSIAKQ 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMTEYMKAAVGVTPDRPILIDRFLN---HATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P   I  +  + ++       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISAENVETIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +       KV+ LE N +   T     P ++         +   ++      R
Sbjct: 818 LMNMQYAI--EKGKVYVLEANPRASRT----VPLVSKVCNIRMVPIATDIITSELTGR 869


>gi|298490013|ref|YP_003720190.1| carbamoyl-phosphate synthase large subunit ['Nostoc azollae' 0708]
 gi|298231931|gb|ADI63067.1| carbamoyl-phosphate synthase, large subunit ['Nostoc azollae' 0708]
          Length = 1094

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAKVIEKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + ++    + +   GVPVCPS  
Sbjct: 89  TMGGQTALNLAVALSKNGVLDKYNVELIGAKLPAIEKAENRKLFNEAMGKIGVPVCPSGT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +        P +I+P       G  +    +   L        +   Q+LI+
Sbjct: 149 ASSLEESKEIAHHIGTYPLIIRPAFTMGGTGGGIAYNQEEFELMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+    + 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAGIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327


>gi|213421395|ref|ZP_03354461.1| D-alanyl-alanine synthetase A [Salmonella enterica subsp.
          enterica serovar Typhi str. E01-6750]
          Length = 39

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/34 (38%), Positives = 19/34 (55%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVS 34
          + ++ GG S+E EVSL S K    A++   F V 
Sbjct: 6  VGIVFGGKSAEHEVSLQSAKNIVDAIDKTRFDVV 39


>gi|71897682|ref|ZP_00679927.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|71732585|gb|EAO34638.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
          Length = 1080

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++   KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +++    I      P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + GF+   +         D D S  L    L  +    ++             G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   +       +     
Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +     +       +S  +S  + P  + +    +++R      QA+   G+
Sbjct: 767 IADPEGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSVATQDDLRRQVIRLAQALNVIGL 826

Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F           V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873


>gi|28198316|ref|NP_778630.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           Temecula1]
 gi|71276056|ref|ZP_00652337.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Dixon]
 gi|71899478|ref|ZP_00681636.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|170729660|ref|YP_001775093.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M12]
 gi|182680955|ref|YP_001829115.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa M23]
 gi|32129438|sp|Q87EB8|CARB_XYLFT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|28056386|gb|AAO28279.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa
           Temecula1]
 gi|71163139|gb|EAO12860.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Dixon]
 gi|71730791|gb|EAO32864.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Xylella fastidiosa Ann-1]
 gi|167964453|gb|ACA11463.1| carbamoyl-phosphate synthase large chain [Xylella fastidiosa M12]
 gi|182631065|gb|ACB91841.1| carbamoyl-phosphate synthase, large subunit [Xylella fastidiosa
           M23]
 gi|307579423|gb|ADN63392.1| carbamoyl phosphate synthase large subunit [Xylella fastidiosa
           subsp. fastidiosa GB514]
          Length = 1080

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D            R+V  ++   KPD    
Sbjct: 29  SGAQACKALRAEGFRVVLVNSNPATIMTDPDMADAVYIEPIHWRTVEKIITKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMQEIGLECPKAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +++    I      P +I+P       G  +    Q     + +    +   ++L+E+
Sbjct: 149 AKSLERALEIQAKVGFPTIIRPSFTLGGTGGGIAYNRQEFEEIIKRGLELSPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDASDNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGIDPQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + GF+   +         D D S  L    L  +    ++             G   
Sbjct: 588 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVEVEHPVGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   +       +     
Sbjct: 648 LKLAKALEANGVPVIGTSPESIDLAEDRERFQRLVQQLGLRQPPNCTARTADEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYSEADLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +     +       +S  +S  + P  +      +++R      QA+   G+
Sbjct: 767 IADPEGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQDDLRRQVIRLAQALNVIGL 826

Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F           V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQSNDDGSDIVYLLEVNPRASRT----VPFVSKATGVPLAKIAAR 873


>gi|170732613|ref|YP_001764560.1| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia MC0-3]
 gi|169815855|gb|ACA90438.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           cenocepacia MC0-3]
          Length = 1084

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|162218056|ref|YP_620694.2| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia AU 1054]
 gi|162227934|ref|YP_834937.2| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia HI2424]
          Length = 1084

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|327537941|gb|EGF24638.1| carbamoyl-phosphate synthase, large subunit [Rhodopirellula baltica
           WH47]
          Length = 1083

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+   ++ ++A A   ++ +         V    +
Sbjct: 89  TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P V++P       G  +          +      +   ++LIE+
Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVIREIGVETGGSNIQFAIEPDTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL++ G +   +         D D S  L    L  +   N+      +  +VQ   +  
Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQPDGVIVQFGGQTP 651

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV------------PVCPSILVNRFTMDSQHL 123
                        +    + +        +            P                 
Sbjct: 652 LNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAKR 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + +          + ++     G  +LI+++  D  E+    +
Sbjct: 712 IGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDAI 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +   +  E++         +   G
Sbjct: 772 SDGNNCVIMGIMEHIEEAG---VHSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVVG 828

Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +   + LE+N +   T     P +A   G     L   
Sbjct: 829 LMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANLATK 875


>gi|319944202|ref|ZP_08018478.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319742497|gb|EFV94908.1| carbamoyl-phosphate synthase, large subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 1088

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D +            +  ++   +P     
Sbjct: 29  SGAQACKALRQEGYRVVLVNSNPATIMTDPDMADVTYIEPITWQVLERIIEKERPSAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+   +    +   A   + D+ + KQ + S G+    S  
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYGVELIGARPEAIEKAEDRQKFKQAMESIGLGSARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++Q  I  P +I+P       G  +    +            +  ++LLIE+
Sbjct: 149 AHSMDEAWEAQRDIGFPVIIRPSFTLGGTGGGIAYNAEEFETICKTGLELSPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDREDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAIHPETGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 95/298 (31%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++   KP        G   
Sbjct: 582 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVELEKPVGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +   + 
Sbjct: 642 LKLARALEAAGVPIIGTSPDSIDVAEDRERFQKLLTRLGLLQPPNRTARTEGEAIQLANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   + +   + ++   ++   +L++++  D IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHDQRDLERYMREAVKVSNDSPVLLDRFLNDAIEVDVDCL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   + +E++R   L  +A+  RG
Sbjct: 762 CDGERVVIGGVMEHIEQAG---VHSGDSACSLPPYSLSPVLVEEIKRQTVLMAKALKVRG 818

Query: 243 ISRSDFLFDPL---------SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F              + +V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAIQREPAEQEGQPPTERVYVLEVNPRASRT----VPFVSKATGVQLAKVAAR 872


>gi|28572557|ref|NP_789337.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei
           TW08/27]
 gi|28410689|emb|CAD67075.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei
           TW08/27]
          Length = 1103

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D + S            +  +L   +PD    
Sbjct: 29  SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
            L G    +  +Q      LE        +     A   ++   + +V  S   V     
Sbjct: 89  TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +        P VI+P      LG  ++  +  +   + Q    +   Q+L+E+
Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +       T I     +     +      +          + Y+ ++ +
Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHTGDSVTVAPAMTLTDRE-YQNLRNI 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A    + IG   G     F  +P   +V  +E+N  P ++  S     +   G+   +L 
Sbjct: 268 AIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVN--PRVSRSS--ALASKATGFPIAKLA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326


>gi|28493332|ref|NP_787493.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str.
           Twist]
 gi|28476373|gb|AAO44462.1| carbamoyl-phosphate synthase large chain [Tropheryma whipplei str.
           Twist]
          Length = 1103

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D + S            +  +L   +PD    
Sbjct: 29  SGTQACRVLKEEGIRVILLNSNPATIMTDPEFSDATYIEPMTIEVLEAILDKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
            L G    +  +Q      LE        +     A   ++   + +V  S   V     
Sbjct: 89  TLGGQTALNLAMQLHNKGLLEKYGTQLIGATPEVIARGENREMFRHIVLSSGAEVATSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +        P VI+P      LG  ++  +  +   + Q    +   Q+L+E+
Sbjct: 149 ITSVEGAVLFAQKNGYPLVIRPSYTMGGLGSSLVHTESELVDSVKQGIEASPNGQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +       T I     +     +      +          + Y+ ++ +
Sbjct: 209 SIVGWKEYELELMRDVAGNTVIVCSIENIDPVGVHTGDSVTVAPAMTLTDRE-YQNLRNI 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A    + IG   G     F  +P   +V  +E+N  P ++  S     +   G+   +L 
Sbjct: 268 AIAIIRMIGINTGGCNIQFAVNPTDGRVVVIEVN--PRVSRSS--ALASKATGFPIAKLA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326


>gi|32477331|ref|NP_870325.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Rhodopirellula baltica SH 1]
 gi|81835273|sp|Q7UJ58|CARB_RHOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|32447882|emb|CAD77400.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Rhodopirellula baltica SH 1]
          Length = 1083

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPATADATYIEPLTWQIVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+   ++ ++A A   ++ +         V    +
Sbjct: 89  TLGGQTGLNVAMDLDANGVLEKYGVEMIAANAKVIAKAEEREQFKQAMDKIGLDVCKGFT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P V++P       G  +          +      +   ++LIE+
Sbjct: 149 VRTLADARKALAEVGLPAVVRPSFTMGGSGSAIAYNKDDFDSLVQNGLDQSPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVMRDCDDNVVIICAIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVIREIGVETGGSNIQFAIEPDTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 80/291 (27%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL++ G +   +         D D S  L    L  +   N+      +  +VQ   +  
Sbjct: 592 ALQEMGIESIMVNSNPETVSTDYDTSDILFFEPLTIEDVLNICDAMQPDGVIVQFGGQTP 651

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGV------------PVCPSILVNRFTMDSQHL 123
                        +    + +        +            P                 
Sbjct: 652 LNLARGLEQAGVPIIGTSVDTIDTAEDRELFSSLIDELGLRQPPSGIARNMDEARVEAKR 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + +          + ++     G  +LI+++  D  E+    +
Sbjct: 712 IGYPALVRPSFVLGGRAMEICYDHSQFARYVAEAFIVADGQPVLIDRFLEDATEVDVDAI 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +   +  E++         +   G
Sbjct: 772 SDGNDCVIMGIMEHIEEAG---VHSGDSACCIPPFSLTQPVLAEIRDATRKLAARLNVVG 828

Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +   + LE+N +   T     P +A   G     L   
Sbjct: 829 LMNIQFAVKMEGTQPTLYILEVNPRASRT----VPFVAKATGVPVANLATK 875


>gi|294056034|ref|YP_003549692.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615367|gb|ADE55522.1| carbamoyl-phosphate synthase, large subunit [Coraliomargarita
           akajimensis DSM 45221]
          Length = 1078

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/304 (12%), Positives = 91/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV         ++  ++A  KPD    
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPEFADVTYIEPLTVDALEKIIAQEKPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            L G  G +  +      +   Y    I A   +++K  ++ V     + +   +  +  
Sbjct: 89  TLGGQTGLNLSMDLNEAGILAKYGVEMIGAKPEAIEKGEARDVFKQAMLKIGLDVARSAT 148

Query: 117 TMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                  +          P +I+P       G  +    +     +      +   ++L+
Sbjct: 149 VNTLADALKAADEIIGDFPIIIRPSFTLGGSGGGIAYNREEYEKIVQAGLDASPTTEVLV 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E+ + G +     +     D   +     +F    +      +          +      
Sbjct: 209 EECLLGWKEYEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITIAPAMTLTDKEYQLMRD 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 ASFACIREVGVETGGSNIQFSVNPANGRMVVIEMN--PRVSRSS--ALASKATGFPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 84/289 (29%), Gaps = 29/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNVLHGNFG 63
           AL + G++   +         D D S  L                   D       G   
Sbjct: 589 ALREVGYETIMVNSNPETVSTDYDTSDKLFFEPLTLEDVLEIYYQSDCDGVIVQFGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T   ++ +A   +  R          P            +    
Sbjct: 649 LNLASELEAHGVNIIGTSPSMIDAAEDRNLFRDILDRVGLKQPKNRIANSQEQAYELAGE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++     +   + +      G  +L++Q+++          
Sbjct: 709 IGFPILLRPSFVLGGRGMFIVYDMDEMKKIIREVFDVAPGKPVLLDQFLEDAYELDVDCI 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     +       +   +S   +  + P  +  ++ + V++ ++   + +   G+
Sbjct: 769 SDGETTVIGGM--LQHVEFAGVHSGDAAMVMPPHTLSDEMLETVRQASYALAKELEVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +       +++ +E+N +   T     P ++   G    +    +
Sbjct: 827 MNVQYAI--KDNELYIIEVNPRASRT----VPFVSKAIGVPLAKYAARL 869


>gi|34762313|ref|ZP_00143317.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
 gi|27888035|gb|EAA25098.1| Carbamoyl-phosphate synthase large chain [Fusobacterium nucleatum
           subsp. vincentii ATCC 49256]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVVLVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +        + +  +G+
Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|262067670|ref|ZP_06027282.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium
           periodonticum ATCC 33693]
 gi|291378619|gb|EFE86137.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium
           periodonticum ATCC 33693]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         +L+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGVLDECGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLIDYTKKLASGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|119775635|ref|YP_928375.1| carbamoyl phosphate synthase large subunit [Shewanella amazonensis
           SB2B]
 gi|119768135|gb|ABM00706.1| carbamoyl-phosphate synthase large subunit [Shewanella amazonensis
           SB2B]
          Length = 1076

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R  + +   G+    +  
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRARFDKAMKKIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       Q    +  ++LLI++
Sbjct: 149 AHSMEEAYAVLDQVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCSIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLREIGVETGGSNVQFGISPTTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVHYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAIKRLNMKQPENDTVTTVEGAVIAAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDDATEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +   I  +++         +G  G
Sbjct: 767 CDGETVVIGAIMEHIEQAG---VHSGDSACSLPPYTLSKAIQDQMREQVSKLAFELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|325282763|ref|YP_004255304.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           proteolyticus MRP]
 gi|324314572|gb|ADY25687.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           proteolyticus MRP]
          Length = 1023

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  +         D D              V  V+   +PD    
Sbjct: 29  SGTQALKALKSEGYRVILVNSNPATIMTDPDLADATYLEPLTPEFVRRVIEKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +          LE   +    +   A     D+   +  +   GV       
Sbjct: 89  TLGGQTALNLAMELHENGTLEEFGVELIGANAEAIHKGEDREAFQAAMQKIGVETARGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++ Q  +  P VI+P       G  +    +            +    +L+E+
Sbjct: 149 VHSMEEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLKITEGGLRDSPVTSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +         ++  +   + 
Sbjct: 209 SILGWKEYELEVMRDTADTVVIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQELRDQS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   +  +P   +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LKIIREIGVDTGGSNIQYAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 86/291 (29%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG++   +         D D              V  ++ H KP      L G   
Sbjct: 580 ALQEAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIIEHEKPVGVIVQLGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +       I  T    +  A                 P+                
Sbjct: 640 LKLAQRLADAGAPIIGTSPETIHQAEDRASFNELCERLGIPQPLGKVAATPTQAERLAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGV 181
           +  P + +P        +  ++    +   L +  +   G   ++ +Q+++G  EL    
Sbjct: 700 LGFPLMARPSYVLGGRAMRTVRSMPELKTYLKEVYAAVEGQPSILLDQFLEGALELDVDC 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++  + P  +  ++ + V++        +G R
Sbjct: 760 LCDGQSAVVAGIMEHIEAAG---VHSGDSACIIPPVSLSAELLETVKKTTERLALELGVR 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+    +         + LE N +   T     P ++   G+   +    +
Sbjct: 817 GLMNVQYAV--KDGVPYILEANPRASRT----VPYVSKATGHPLAKYAARI 861


>gi|294782719|ref|ZP_06748045.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           1_1_41FAA]
 gi|294481360|gb|EFG29135.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           1_1_41FAA]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         +L+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGVLDECGVEILGTKLSSIKQAEDRELFRDLMNELNEPVPDSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFIKEIGYPVIVRPAFTMGGTGGGICYNDEDLQEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+ +                       V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLTQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLIELKIPQPLGKTAFDVETALKNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +          +  +G+
Sbjct: 760 DGENTFIPGIMEHIERAG---VHSGDSISIYPPQSLSEKEIETLIDYTKKLASGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQYVV--SKGEIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|171316211|ref|ZP_02905434.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
 gi|171098625|gb|EDT43422.1| D-alanine--D-alanine ligase [Burkholderia ambifaria MEX-5]
          Length = 50

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 13/42 (30%), Positives = 24/42 (57%)

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   ++LE+N  PGMT  S+ P+ A   G  + EL++ ++
Sbjct: 3   DATGNAYFLEVNTAPGMTDHSLPPKAARSIGIGYSELVVKVL 44


>gi|257064024|ref|YP_003143696.1| carbamoyl-phosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
 gi|256791677|gb|ACV22347.1| carbamoyl-phosphate synthase large subunit [Slackia
           heliotrinireducens DSM 20476]
          Length = 1093

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/313 (12%), Positives = 101/313 (32%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACKVLQEEGYEVVLVNSNPATIMTDPQLADRTYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G  G +  V+     +L+   +      + A     D+    + +   G+       
Sbjct: 89  TIGGQTGLNTAVELAKSGVLDKYGVEMIGCDLDAIERGEDRKLFAEAMEEIGLECARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P V++P       G  +   ++ +   + Q    +  +++L+E+
Sbjct: 149 AYSVEDAVELSKSIGFPLVLRPSFTLGGAGGGIAYDEKQLREIVAQGLELSPANEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +         I     +F +  +      +         ++  +     
Sbjct: 209 SIIGWKEYEMEVMRDRAGNGIIVCSIENFDAMGVHTGDSITVAPAQTLSDVEYQRMRVAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKVGVETGGSNVQFALNPDNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIINDI 339



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 84/281 (29%), Gaps = 31/281 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL DAGF+   +         D D              V  ++   +PD     L G   
Sbjct: 597 ALHDAGFETIMVNCNPETVSTDYDTSDRLYFEPLTYEDVMDIVDVERPDGVVVTLGGQTP 656

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++  +         P           +     
Sbjct: 657 LKLARALADSGVPIMGTQPEAIDLAEDRERFSAILDELKIIYPAAGMATSYEEALKVASR 716

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P +++P       G+ +    Q++   + ++   +    + ++ Y++G  E     +
Sbjct: 717 IGFPLLVRPSYVLGGRGMFISYNPQTLETYMAEAMRVSPDHPVYLDHYLEGGYECDVDAL 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++T + P      I  +++ +       +G +G
Sbjct: 777 CDGEDVYIGGVLEHIEEAGIHSG---DSATCIPPFSFSDRIVNQLRSITRQLALRLGVKG 833

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           +    +     +  ++ +E N +   T     P ++   G 
Sbjct: 834 LINVQYAI--KNDTIYVIEANPRASRT----VPFISKSTGV 868


>gi|195953494|ref|YP_002121784.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
 gi|195933106|gb|ACG57806.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hydrogenobaculum
           sp. Y04AAS1]
          Length = 554

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ +                       +  ++   +PD+   
Sbjct: 29  SGTQACKALMREGYEVVLVNSNPATIMTDEQLATKTYIEPLSVEVLEEIIKKERPDVLLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G       +D     ILE   +    +   A     D+             VP    
Sbjct: 89  TLGGQTALNLAKDLYESGILERYGVGIIGANYEAIKKGEDRALFAKAMEEIGLKVPPNAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M S   I  P +++P       G  ++   +  P  L  +   +   Q+LI++
Sbjct: 149 VNSISEGMASIKDIGFPAILRPAFTLGGTGGSIVYNLEEFPAKLNAALEASPIHQVLIDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +                   
Sbjct: 209 SLIGWKEFELEVIRDTKDNVVIVCSIENFDPMGVHTGDSITVAPAQTLTDKQYQMLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP S   + +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAIIRKIGVDTGGSNIQFAVDPNSDNFYVIEMN--PRVSRSS--ALASKATGFPIAKV 322


>gi|330504839|ref|YP_004381708.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina
           NK-01]
 gi|328919125|gb|AEB59956.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina
           NK-01]
          Length = 1073

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAYGVLEMVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.6 bits (93), Expect = 0.31,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + GF+   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGFETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPEAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ +++ +   + ++   ++   +L++++    IE+
Sbjct: 702 ALSKNIGYPMVVRPSYVLGGRAMEIVYQEEELKRYMREAVKVSNDSPVLLDRFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P  I  E++         
Sbjct: 762 DVDAVCDGETVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEIREQVKKMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+             ++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVIGLMNVQMAVQGED--IYVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866


>gi|146308635|ref|YP_001189100.1| carbamoyl phosphate synthase large subunit [Pseudomonas mendocina
           ymp]
 gi|145576836|gb|ABP86368.1| carbamoyl-phosphate synthase large subunit [Pseudomonas mendocina
           ymp]
          Length = 1073

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGFRVILVNSNPATIMTDPAMADATYIEPIKWATVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +       + D+ R  + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKDIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                       ++  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHSMEEAYGVLEMVGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.2 bits (92), Expect = 0.40,   Method: Composition-based stats.
 Identities = 34/294 (11%), Positives = 91/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   +P       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEQPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +      +   P   +       +
Sbjct: 642 GGQTPLKICRALEEAGVPIIGTSPEAIDRAEDRERFQQMVQRLNLRQPANATARSEDEAL 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ +++ +   + ++   ++   +L++++    IE+
Sbjct: 702 ALSKGIGYPMVVRPSYVLGGRAMEIVYQEEELKRYMREAVKVSNDSPVLLDRFLNCAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P  I  E++         
Sbjct: 762 DVDAVSDGETVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEIREQVKKMALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+             ++ +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVVGLMNVQMAVQGED--IYVIEVNPRASRT----VPFVSKCVGESLAKVAAR 866


>gi|322384094|ref|ZP_08057812.1| carbamoyl phosphate synthase large subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
 gi|321151174|gb|EFX44483.1| carbamoyl phosphate synthase large subunit-like protein
           [Paenibacillus larvae subsp. larvae B-3650]
          Length = 1069

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       +  ++   +PD     
Sbjct: 30  GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFITQIIRQEQPDGLLPT 89

Query: 58  LHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +       +     E + +  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELAKMGVLERENVRLLGTQLDAIERAEDRDLFRELMKELEQPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTVEEAVNFAGEIGYPIIVRPAYTLGGTGGGICGTEEELMEVVSSGIRYSPIGQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDKHDNCIVVCNMENLDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALNIEGGCNVQFALDPQSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 587 AIQSAGYEAVIINNNPETVSTDFSTSDRLYFEPLYLEDVLNVIEREKPIGVIVQFGGQTA 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A +  +  +         P   ++      + +   
Sbjct: 647 INLAEPLAKAGVRILGTDLKNIDRAENRKEFEALLTALDIAQPPGGTVTNVDEAVGTASQ 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P +++P        + ++  D+ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 707 FGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAIC 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  DI +++  +     + +   G+
Sbjct: 767 DKETVLIPGIMEHVERAG---VHSGDSIAVYPPQTLSDDIKRKIVEITTKIAKGLEIVGL 823

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      KV+ +E+N +   T     P ++         +   ++
Sbjct: 824 VNIQFVIFQ--DKVYVIEVNPRSSRT----VPFLSKVTNIPMANVATRVI 867


>gi|123966133|ref|YP_001011214.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123200499|gb|ABM72107.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 1100

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 94/315 (29%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG+++  I         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALRKAGYEIILINSNPASIMTDPDIANKTYIEPLTPEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            + G    +  V+              I A   +++K   +++       +  ++     
Sbjct: 89  TMGGQTALNLAVKLSESNFLKNNNVELIGADLKAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASDLVEAMKVSKQINSYPLIIRPAFTLGGVGGGIAYNLEEFNDLCKSGLDESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEFELEVMRDTSDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAVNPNNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339



 Score = 41.0 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 62/180 (34%), Gaps = 10/180 (5%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P V++P        + ++K    +   + ++   +    +L++QY+         
Sbjct: 727 QNIGFPLVVRPSYVLGGRAMEIVKDKIELSRYISEAVKVSPDHPILLDQYLSNAIEIDV- 785

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGC 240
                 +   + +     +       S +S   LP+     +  + V+    L    +  
Sbjct: 786 -DALCDENGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSQLTLETVKEWTKLIANRLNV 844

Query: 241 RGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G+    F    ++    +++ LE N +   T     P ++   G    +L   +++ +S
Sbjct: 845 VGLINLQFAVTNINHQENELYILEANPRASRT----IPFVSKAIGKPVAKLATQLMQGSS 900


>gi|15607056|ref|NP_214438.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5]
 gi|22095487|sp|O67869|CARB1_AQUAE RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|2984303|gb|AAC07826.1| carbamoyl-phosphate synthase large subunit [Aquifex aeolicus VF5]
          Length = 557

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 100/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKALKQEGYEVILVNSNPATIMTDPEMADKTYIEPLTADILEEIIKKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +         +LE   +    +   A     D+   K+ + S G+ V  S  
Sbjct: 89  TLGGQTGLNLAVELYENGVLERYGVELIGANYEAIKKGEDRELFKETMESIGLKVPESAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++P       G  V    +     L  +   +   ++L+++
Sbjct: 149 VRSVEEGLKAVEKIGFPVILRPAFTLGGTGSSVAYNVEEFKEKLKVALETSPIHEVLLDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +       +    Y+ ++  
Sbjct: 209 SLIGWKEIEFEVVRDKADNVIIVCAIENFDPMGVHTGDSITVAPT-QTLTDKEYQMLRDA 267

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A    +AIG   G S   F   P S   + +E+N  P ++  S     +   G+   ++ 
Sbjct: 268 AIAVIRAIGVDTGGSNIQFALSPESGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326


>gi|261419341|ref|YP_003253023.1| carbamoyl phosphate synthase large subunit [Geobacillus sp.
           Y412MC61]
 gi|319766157|ref|YP_004131658.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
 gi|261375798|gb|ACX78541.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC61]
 gi|317111023|gb|ADU93515.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
          Length = 1065

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELIEIVSTGLKMSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 88/296 (29%), Gaps = 30/296 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    L  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   +  +   N    +L+++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  ++  ++        + +  
Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            G+    F+       V+ LE+N +   T     P ++   G     L    +  A
Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863


>gi|326433625|gb|EGD79195.1| D-alanine-D-alanine ligase [Salpingoeca sp. ATCC 50818]
          Length = 829

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 1/75 (1%)

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++          +  R   R D  F         LE+N  PG         M   AG  +
Sbjct: 752 QLYNQCCRLFARLELRDYGRFDLRFSERDNVFKLLEVNPNPGWCWDGKLALMYERAGLPY 811

Query: 286 RELLLWMVEDASCLR 300
            +L+  +V +A   R
Sbjct: 812 EQLIADIV-NAGANR 825


>gi|312622392|ref|YP_004024005.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312202859|gb|ADQ46186.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 1075

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 99/318 (31%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   + D    
Sbjct: 29  SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   ++       +  S++   Q+L+E+
Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  + P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVIAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +   AL   G K   I         D D S  L    L  +   NV+          
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKAEGVIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNNHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I +++        
Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGIHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|213691634|ref|YP_002322220.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|254813560|sp|B7GPW2|CARB_BIFLI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|213523095|gb|ACJ51842.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
 gi|320457721|dbj|BAJ68342.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 1127

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|78065905|ref|YP_368674.1| carbamoyl phosphate synthase large subunit [Burkholderia sp. 383]
 gi|77966650|gb|ABB08030.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp. 383]
          Length = 1084

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV------- 105
            + G        D     +LE   +    +   A   + D+ + K  ++  G+       
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGV 148

Query: 106 --PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
              +  +  V+   M        P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATQVHAEIMALTGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|294785968|ref|ZP_06751255.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_27]
 gi|294486305|gb|EFG33668.1| carbamoyl-phosphate synthase, large subunit [Fusobacterium sp.
           3_1_27]
          Length = 1058

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       +  ++   KPD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYIEPLTVEFLSKIIRKEKPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G    +         IL+   +    + + +   + D+   R      +  VP    +
Sbjct: 90  LGGQVALNLAVSLHESGILDDCGVEILGTKLTSIKQAEDRELFRDLMNELNEPVPDSVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +    +++   Q L+E+ 
Sbjct: 150 HTLEEAEKFVKEIGYPVIVRPAFTMGGTGGGICYNDEDLEEIVPNGLNYSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +       ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPCLTLTDRENHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQIALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           A++  G++   I+                     +   V  +L   KP        G   
Sbjct: 580 AIKKLGYEAIVINNNPETVSTDFSISDKLYFEPLIQEDVMEILDLEKPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  +    + +A   D+     +      P+  +       + + + 
Sbjct: 640 INLADKLVKNGIQILGSSLDSIDTAEDRDRFEKLLLDLKIPQPLGKTAFNVETALRNANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   + ++   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNDEDLKKYMEKAVHINPEHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +     + +        + +  +G+
Sbjct: 760 DGENAFIPGIMEHIERAG---VHSGDSISIYPPQSLSQKEIETLINYTKKLAKGLKVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 +     K++ LE+N +   T     P ++   G     + +  +
Sbjct: 817 INIQ--YVASKGKIYVLEVNPRASRT----VPFLSKVTGVPVANIAMQCI 860


>gi|254458222|ref|ZP_05071648.1| carbamoyl-phosphate synthase, large subunit [Campylobacterales
           bacterium GD 1]
 gi|207085058|gb|EDZ62344.1| carbamoyl-phosphate synthase, large subunit [Campylobacterales
           bacterium GD 1]
          Length = 1085

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+                    +    +  ++     D    
Sbjct: 29  SGTQAVKTLKEQGYRVVLINSNPATIMTDPEFADRTYIEPIKEDVIAEIIKKENVDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G            + +LE +E        +         +   +     +P      
Sbjct: 89  TMGGQTALNVATSMYEKGMLEGIEFLGATPEAIHKGEDRLAFKEAMIKIGMDLPFSMYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +I+     +  G  V            +    +   ++LIE+ +
Sbjct: 149 NMDDALKAAETIGFPIIIRASFTLAGGGSGVAYNMDEFKKLAARGLDESPVTEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRNASFD 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREVGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 90/262 (34%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ + +PD    ++H        +   L  +      +      L+ D
Sbjct: 616 FEPIDF-EHVRAVIENEEPDGI--IVHFGGQTPLKLADGLTKIGANIIGTTSAVIDLAED 672

Query: 93  KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V+  G+    +               +  P +++P       G+ ++     +
Sbjct: 673 REQFSNFVNKHGLKQPANGLARKKEEAGPIAEKLGFPVLVRPSFVLGGRGMRIVYSHAEL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  + S ++   +LI++++D  IEL    + D +       +   +           
Sbjct: 733 DEYMALAISVSNEAPVLIDKFLDQAIELDVDAICDGTDVYIGSVMQHIEEAGIHSG---D 789

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++ ++V++        +G  G+    +       +++ +E+N +   T
Sbjct: 790 SACSLPPVNLSDEMIEKVEQQTKTIALGLGVVGLMNVQYAI--FKDEIYLIEVNPRASRT 847

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 848 ----VPFVSKATGMPLAKVATR 865


>gi|171915262|ref|ZP_02930732.1| carbamoyl-phosphate synthase large subunit [Verrucomicrobium
           spinosum DSM 4136]
          Length = 1089

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYEVVLVNSNPATIMTDPEFAARTYVEPITPEVVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +       LE   +    +   A     D++  K  +   G+ +  S  
Sbjct: 89  TLGGQTALNTAMSLFKSGVLEKYNVRMIGAKADAIEKGEDRLLFKNAMLKIGLDLPQSGV 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +   T+ ++ + + P +I+P       G  +    +     + +    +  +++LIE
Sbjct: 149 AHKMEEATIIAEEIGTYPLIIRPAFTLGGSGGGIAYNREEFETIVARGIDMSPVNEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +     +      +   +      +       
Sbjct: 209 ESLLGWKEFEMEVMRDRADNCVVICSIENLDPMGVHTGDSITVAPIQTLTDREYQIMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                 +     G S   F   P S ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SFACIREIGVETGGSNIQFAVHPTSGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 37.2 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 19/171 (11%), Positives = 57/171 (33%), Gaps = 10/171 (5%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P +++P        + ++  D  +   +  +   +    +L++++  D  E+    
Sbjct: 722 RIGYPSLVRPSFVLGGRAMQIVYSDAELIHYMQNAVEASPERPVLVDRFLEDATEVDVDC 781

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +           ++  + P  +  ++   +   A    +A+  R
Sbjct: 782 ISDGETTVVGAIMEHIEEAGIHSG---DSACVIPPFSLTKEMQVRITDAAKKLARALDVR 838

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+             ++ +E+N +   T     P ++   G    +    +
Sbjct: 839 GLMNMQLAV--KGDDLYVIEVNPRASRT----VPFVSKAIGVPLAKYAAKI 883


>gi|229013071|ref|ZP_04170236.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM
           2048]
 gi|228748325|gb|EEL98185.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides DSM
           2048]
          Length = 1018

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229134696|ref|ZP_04263505.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST196]
 gi|228648742|gb|EEL04768.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST196]
          Length = 1018

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229168627|ref|ZP_04296349.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621]
 gi|228614783|gb|EEK71886.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH621]
          Length = 1018

 Score = 64.5 bits (155), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIGLGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDALLPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICNNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|160937903|ref|ZP_02085261.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC
           BAA-613]
 gi|158439129|gb|EDP16883.1| hypothetical protein CLOBOL_02797 [Clostridium bolteae ATCC
           BAA-613]
          Length = 1072

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 92/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 586 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   ++  +     +   P   ++       ++ H 
Sbjct: 646 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDAILEQCNIPRPAGHTVFTAEEAKEAAHK 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 706 LGYPVLVRPSYVLGGQGMQIAISDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 765

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +    +   +        S          +  +D    +        +A+  +G+
Sbjct: 766 DGTDILIPGIMQHIERTGIHSGDSISVYPAQDITQHNIDT---IVDYTEKLARALHVKGM 822

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 823 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATRII 866



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 96/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  ++       +   +    +  L    + D+   K+ +      V     +
Sbjct: 90  LGGQAGLNLAMELEDAGFFKEHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  +    +     L      +   Q+L+E+ 
Sbjct: 150 EDVKHGLEIAEKIGYPVVLRPAYTLGGSGGGIAANPEQCAEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        + +A   +
Sbjct: 325 IALGYTLDEIRNAVTKK 341


>gi|11498873|ref|NP_070102.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Archaeoglobus fulgidus DSM 4304]
 gi|22095482|sp|O28994|CARB_ARCFU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|2649305|gb|AAB89970.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Archaeoglobus fulgidus DSM 4304]
          Length = 1076

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++    PD    
Sbjct: 29  SGSQACKALREEGYEVVLVNSNPATIMTDPEMADRVYIEPLDAEIVAKIIERETPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +L+   +    +   A   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVQLTEMGVLDKYGVELIGAKFEAIKKAEDRELFKEAMRKIGLDVPKSDV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G  +    + +     +    +  +Q+LIE+
Sbjct: 149 AHDVSEALAIADEIGYPVVVRPAFTLGGTGGGIAYNREELREIAERGIKMSMINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +         ++        
Sbjct: 209 GVLGWKEFELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDVEYQYLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIIREIGVETGGSNIQFAVHPENGRVVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.6 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 32/289 (11%), Positives = 86/289 (29%), Gaps = 31/289 (10%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+D G++   ++                         V  +  + +P+       G    
Sbjct: 590 LKDEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEQPEGVIVQFGGQTPL 649

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   +       I  T    +  A   ++        +   P            +    I
Sbjct: 650 NIARELEDSGARILGTSVDSIDIAEDRERFAELLERLNIPQPENGIAHSLEEAKEIARKI 709

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
             P +++P        + ++  ++++   + ++   +    +LI+++  D IE+    + 
Sbjct: 710 GFPVLVRPSYVLGGRAMEIVYDEETLERYITEALEVSPEKPILIDKFLEDAIEVEVDALC 769

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +       +         A+   G+
Sbjct: 770 DGEEVVIGGIMEHIEEAG---VHSGDSACVLPPVSLDEVTINTIVDYTRKLALALNVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +       KV+ LE N +   T     P ++   G    ++   +
Sbjct: 827 INIQYAV--KDGKVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869


>gi|148642548|ref|YP_001273061.1| carbamoylphosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222445957|ref|ZP_03608472.1| hypothetical protein METSMIALI_01605 [Methanobrevibacter smithii
           DSM 2375]
 gi|261349504|ref|ZP_05974921.1| carbamoyl-phosphate synthase, large subunit [Methanobrevibacter
           smithii DSM 2374]
 gi|167006445|sp|A5UKG5|CARB_METS3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|148551565|gb|ABQ86693.1| carbamoylphosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
 gi|222435522|gb|EEE42687.1| hypothetical protein METSMIALI_01605 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861868|gb|EFC94166.1| carbamoyl-phosphate synthase, large subunit [Methanobrevibacter
           smithii DSM 2374]
          Length = 1058

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 89/300 (29%), Gaps = 30/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +   +         D+D              V  ++     D    
Sbjct: 29  SGSQACKSLREEGIETVLVNSNPATIQTDMDMADTVYTEPLTPEIVSEIIKKENVDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL----SMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         L       G     +      D         +  +P C ++ 
Sbjct: 89  TMGGQTGLNIATGLGDLGLLDGIKVLGSDIQTIKDVEDRDLFGHFMDKLNEPIPKCHAVE 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +++P       G  V   ++ +          +  +Q+LI++ V
Sbjct: 149 SVEEAIEAVKDIGYPVIVRPAFTLGGTGGGVAYNEEELIEIATHGLDMSFINQVLIDESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +                 D  + ++  + 
Sbjct: 209 LGWKEFEYEVMRDKEDTCIIVCNMENIDPMGIHTGESVVVAPAQNLNDRD-SQALRDASI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+G +G     F  +P + +   +E+N  P ++  S     +   GY   ++   +
Sbjct: 268 KIIRALGIQGGCNIQFAVNPETGEYKVIEVN--PRVSRSS--ALASKATGYPIAKISSKI 323



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 29/294 (9%)

Query: 25  ALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVLHGNFG 63
           AL+D G +   I           D+   +            ++   KPD       G   
Sbjct: 572 ALKDEGIETILINNNPETVSTDYDISDKLFFEPITFEDVMGIIDQEKPDGVIVQFGGQTS 631

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      ++I  T    +      +                 +        +    
Sbjct: 632 INLAVPLANAGVKILGTPYESIDGVEDRELFAKLLNKLHIHQAPYGTANSFEEAREIAER 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I+ P +++P        + ++  +  +   + ++   +    +L++++  D IEL   V+
Sbjct: 692 ITFPVLVRPSYVIGGRAMEIVYDNNELEKYMKEAVKVSPEHPILVDKFLEDAIELDVDVL 751

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  IP  I   ++  +      +  +G
Sbjct: 752 CDGEEVFIAGIMEHIEEAG---VHSGDSACVIPPQTIPEHILNTIREYSTKLALELDVKG 808

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +    +        V+ +E N +   T     P ++   G    ++  W++  A
Sbjct: 809 LMNIQYAVKLDEEMVYIIEANPRASRT----VPFVSKAIGVPLAKVATWIMTGA 858


>gi|289549279|ref|YP_003474267.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
 gi|289182896|gb|ADC90140.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
          Length = 557

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKALVEEGYQVVLVNSNPATIMTDPGMAHRTYIEPLTVDILEEIIKVERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +       + +LE   +    +   A     D+   K+ +   G+ V PS  
Sbjct: 89  TLGGQTALNLAVKLYEEGVLERYGVELLGASYTAIKKGEDRQLFKKSMERIGLKVPPSAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++P       G  +    +     L  +   +   Q+LI++
Sbjct: 149 VSSLEEALQAIKEIGFPAILRPAFTLGGTGGAIAYNMEEFVERLQIALKTSPIHQVLIDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEFEVVRDRKDNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRDAC 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +   + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IQIMREVGVDTGGSNIQFAVNPENGDFYVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|192360281|ref|YP_001983182.1| urea amidolyase-like protein [Cellvibrio japonicus Ueda107]
 gi|190686446|gb|ACE84124.1| urea amidolyase homolog [Cellvibrio japonicus Ueda107]
          Length = 1205

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 21/182 (11%), Positives = 57/182 (31%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG  +G+ +   D  +             +      +++       
Sbjct: 147 ANCIGYPVMLKSTAGGGGIGMQLCHSDSELIAAFDSVKRLGKNNFADDGVFLEKFIAAAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            +        +             +  +       PA    +  ++  +        ++ 
Sbjct: 207 HIEVQVFGDGQGTAVAIGERDCSSQRRNQKVVEECPAPNLPEAQRQAMQQVAEQLLASVC 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVED 295
            R     +F++D L  + ++LE+N             +    G +   +  +L+ WM++ 
Sbjct: 267 YRNAGTVEFIYDSLDNRFYFLEVNT-----------RLQVEHGVTEEVYSVDLVEWMLKQ 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|158338511|ref|YP_001519688.1| carbamoyl phosphate synthase large subunit [Acaryochloris marina
           MBIC11017]
 gi|158308752|gb|ABW30369.1| carbamoyl-phosphate synthase, large subunit [Acaryochloris marina
           MBIC11017]
          Length = 1080

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL D G++V  I+ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALRDEGYEVVLINSNPATIMTDPETAERIYIEPLTPELVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         +L+   +    + + A  ++ D+   K+ +   G+ VCPS  
Sbjct: 89  TMGGQTALNLAVTLAKTGVLDQYNVELIGAKLPAIEMAEDRKLFKEAMERIGLGVCPSGL 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q + + P +++P       G  +    +            +   Q+LIE
Sbjct: 149 AETMAESQQIAQEIGTYPLIVRPAFTLGGTGGGIAYNQEEFEAIAQSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPIDGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI----LASALSMDKM 94
              V  +L    P+       G       V     L   P           +  ++ D+ 
Sbjct: 621 KEDVLNILEAENPEGIIIQFGGQTPLKLAVPLQTYLQGKPDGPKIWGTSPDSIDIAEDRE 680

Query: 95  RSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           R +Q++ +  +   P+     N+   +    I  P V++P        + ++  D+ +  
Sbjct: 681 RFEQILHTLNITQPPNGIARSNQEATEVAQRIQYPVVVRPSYVLGGRAMEIVYSDEELER 740

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +  +        +LI+++++   +   V   A      +     +       +S  ++ 
Sbjct: 741 YMTFAVQVEPDHPILIDKFLE-DAIEVDVDAIADRTGEVVIGGIMEHIEQAGVHSGDSAC 799

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
            +    +  +    ++  +    Q +   G+    F       +V+ LE N +   T   
Sbjct: 800 AIPTLSLGEETLATIREWSKQLAQQLNVIGLMNLQFAV--QGEQVYILEANPRASRT--- 854

Query: 273 IFPEMAAYAGYSFRELLLWM 292
             P ++   G    ++   +
Sbjct: 855 -VPFVSKAIGLPLAQVAARL 873


>gi|124358354|gb|ABN05628.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|124358356|gb|ABN05629.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 270

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 44/272 (16%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK------------------------- 50
           + S    A+ +    ++   I + +S    +                             
Sbjct: 1   VKSAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLV 60

Query: 51  ----------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
                      D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V 
Sbjct: 61  KKNHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVA 120

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
            + G+      ++N+         + P  +KP + GSS G+  +     +   +   S+ 
Sbjct: 121 KNAGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESAR 178

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------H 213
            +  ++LIEQ V G E+ C V+G+++  V          Y     +  +           
Sbjct: 179 QYDSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVI 238

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            +PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 239 TVPADLSAEERGRIQETAKKIYKALGCRGLAR 270


>gi|332665548|ref|YP_004448336.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332334362|gb|AEE51463.1| carbamoyl-phosphate synthase, large subunit [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 938

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   + +L + G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQASRSLREEGIEVSLINSNPATIMTDPVTADNVYLLPLTVESIVQILEERKIDAVLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +         + +   +      I A  L+ ++   +Q +   G+ V PS  
Sbjct: 89  TMGGQTALNLAIEADKMGVWDKYGVRMIGVDIAAIELTENREAFRQHMIDIGLDVAPSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P       G   + K++     L +  + +   ++L+E+
Sbjct: 149 ANSFLEGKEAAQKIGFPLVIRPSYTLGGTGGGFVHKEEEFDAALRRGLNASPTHEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +                 + 
Sbjct: 209 AVLGWKEFELELLRDKNDSVVIICTVENFDPMGIHTGDSITVAPAMTLSDTAYQDMRDQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                      G     F  DP++ K+  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 ILAMRSLGNFSGGCNIQFAQDPVTEKLIVIEIN--PRVSRSS--ALASKATGYPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 85/284 (29%), Gaps = 33/284 (11%)

Query: 25  ALEDAGFKVSQID-------VDRSVGLVL--------------AHLKPDLAFNVLHGNFG 63
           A+++AG++   ++        D  +   L                 KP+     L G   
Sbjct: 585 AIKEAGYEAIMVNCNPETVSTDFDMADKLYFEPVFWEHLEEIIELEKPEGVIVQLGGQTA 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + ++I  T    +  A                 P           +   + 
Sbjct: 645 LKLAETLHKKGIKIIGTSFANMDLAEDRGAFSDLLKELEIPYPDYGVADDVDEAIRIANK 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           +  P +++P        + ++  DQ +   +L        +++LI+ ++D   E     +
Sbjct: 705 VGYPVLVRPSYVLGGQSMRIVINDQEVERHVLSIFKHMPENKVLIDHFLDRAKEAEIDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D         +   +         S +S+ VLP     +D    +   A    +A+  R
Sbjct: 765 FDGEDIHIMGIMEHIE----PAGIHSGDSSAVLPTYSLSVDAVATMVEHAEKLARALNIR 820

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           G+    F        V+ +E N +   T     P +A      +
Sbjct: 821 GLINIQFAI--KDNHVYVIEANPRASRTT----PFIAKAYKVPY 858


>gi|239944152|ref|ZP_04696089.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 15998]
 gi|239990607|ref|ZP_04711271.1| D-alanyl-alanine synthetase A [Streptomyces roseosporus NRRL 11379]
          Length = 197

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 6/188 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M  +  +S P  +KP + G+S GI  +     +   +  ++  +    +         E 
Sbjct: 1   MWQKADMSLPVFVKPARLGASYGISRVTTAHELSDAINAAAEHDPVVLIEESVPTPFTEY 60

Query: 178 TCGVMGDA-----SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
              ++              +        +         ++  +      ++   +   A 
Sbjct: 61  EVPIIAGREIVSAPPGQVCLPQAAEWHDTLSKYSLDAETSRTISRTGDAELDSRLMEAAL 120

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A    G    +R D   D    +V+  EIN  PG    S FP +   AG+S    L  M
Sbjct: 121 AAASLAGVACAARVDLFVDAH-GQVYVGEINALPGQGFNSNFPRIFELAGFSRPRQLELM 179

Query: 293 VEDASCLR 300
           ++ A   R
Sbjct: 180 IDSALFHR 187


>gi|157863079|gb|ABV90644.1| carbamoyl-phosphate synthase large subunit [Pseudomonas sp. G]
          Length = 1073

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIKWQTVAKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G  E    V+ D   +   +   ++          S+                    
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           LA L    +     S   F   P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 LAVLREIGVETGNGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 87/283 (30%), Gaps = 30/283 (10%)

Query: 25  ALEDAGFK----------VSQIDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           AL + G++          VS  D              V  +    KP        G    
Sbjct: 588 ALRENGYENHHGQLQPETVSDYDTSDRLYFEPVTLEDVLEICRVEKPKGVIVQYGGQTPL 647

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T    +  A   ++ +      +   P   ++      + +   I
Sbjct: 648 KLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAVRAAAKI 707

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
             P V++P        + ++ K++ +   L  +   ++   +L++ +    IE+    + 
Sbjct: 708 GYPLVVRPSYVLGGRAMEIVYKEEELKRYLRDAVQVSNDSPVLLDHFLNCAIEMDVDAVC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +P  I  E++         +G  G+
Sbjct: 768 DGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPARIQDEMREQVKKMALELGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                        ++ +E+N +   T     P ++   G S  
Sbjct: 825 MNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGISLA 861


>gi|113868420|ref|YP_726909.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha H16]
 gi|113527196|emb|CAJ93541.1| carbamoylphosphate synthase, large subunit [Ralstonia eutropha H16]
          Length = 1082

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAMAVQSRIAQETGTGGYPIVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQELGLRQPPNRTARAEDEALRLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAI 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +   E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVIG 828

Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F          V+ LE+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAIQQNDGVDTVYVLEVNPRASRT----VPYVSKATGLQLAKIAAR 875


>gi|206559639|ref|YP_002230400.1| carbamoyl phosphate synthase large subunit [Burkholderia
           cenocepacia J2315]
 gi|198035677|emb|CAR51564.1| carbamoyl-phosphate synthase large chain [Burkholderia cenocepacia
           J2315]
          Length = 1084

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     ++              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEATKVHAEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|86606404|ref|YP_475167.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           JA-3-3Ab]
 gi|86554946|gb|ABC99904.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           JA-3-3Ab]
          Length = 1074

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D                V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPATIMTDPSMADRVYIEPVTADFVAQIIERERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +       + IL+   +    +   A   + D+   KQ +   G+ V  S  
Sbjct: 89  TMGGQTALNVAVELARRGILDQYGVELIGAKREAIEKAEDRELFKQAMQRLGLAVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      H I  P +I+P       G  V    +            +   Q+L+E+
Sbjct: 149 ARSLAEAKQIAHEIGYPLIIRPAYTLGGTGGGVAYNQEEFEEICAAGLEASPVSQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVIGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDYA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAVNPANGEVRVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 81/283 (28%), Gaps = 28/283 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL   G++   +         D D +  L    L  +   N++             G   
Sbjct: 585 ALRRLGYETIMVNSNPETVSTDYDTADRLYFEPLTYEEVMNLVEAEQPLGLILQFGGQTP 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I       +  A    +            P          +++    
Sbjct: 645 LKLAQGLAAAQAPIWGAAPDSIDIAEDRGRFGRLLEELGIRQPAHGLARSVEESLEIARR 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  DQ +   +  + + +    +L++Q+++   +   V  
Sbjct: 705 IGYPVVVRPSYVLGGRAMEIVYSDQDLRRYMQLAVAVDPNRPVLVDQFLE-DAVEVDVDA 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A            +       +S  ++  +    +   + + ++       QA+   G+
Sbjct: 764 IADHTGAVTIGGILEHIEQAGIHSGDSACVLPSRTLSPAVLQVIRDWTVKLAQALQVVGL 823

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
               +       +V+ LE N +   T     P ++   G+   
Sbjct: 824 INVQYAV--QKEQVYVLEANPRASRT----VPFVSKAIGHPLA 860


>gi|308173514|ref|YP_003920219.1| pyrimidine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus amyloliquefaciens DSM 7]
 gi|307606378|emb|CBI42749.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328553554|gb|AEB24046.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911654|gb|AEB63250.1| pyrimidine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens LL3]
          Length = 1071

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +               +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSDLGVLAECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +   +    I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 RTLQEAEEFVSRIGFPVIVRPAYTLGGTGGGICSNEAELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSRDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  ++   +P+       G   
Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK        +   P+  + +     +     
Sbjct: 640 INLAEELSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVSEAVKIAAS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++         L   ++
Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITKIPMANLATKVI 860


>gi|56419687|ref|YP_147005.1| carbamoyl phosphate synthase large subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379529|dbj|BAD75437.1| carbamoyl-phosphate synthase(glutamine-hydrolyzing) large chain
           [Geobacillus kaustophilus HTA426]
          Length = 1065

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKMSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPIGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    L  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   +  +   N    +L+++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  ++  ++        + +  
Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ LE+N +   T     P ++   G     L    +
Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860


>gi|312875938|ref|ZP_07735928.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311797419|gb|EFR13758.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 1075

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   + D    
Sbjct: 29  SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   ++       +  S++   Q+L+E+
Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +    L   G K   I         D D S  L    L  +   NV+          
Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVRAEGVIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNSHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I +++        
Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|312793564|ref|YP_004026487.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312180704|gb|ADQ40874.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 1075

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   + D    
Sbjct: 29  SGSQACKALKEEGIEVILINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   ++       +  S++   Q+L+E+
Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +    L   G K   I         D D S  L    L  +   NV+          
Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKAEGVIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGYTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNNHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I +++        
Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|307718435|ref|YP_003873967.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila
           DSM 6192]
 gi|306532160|gb|ADN01694.1| carbamoyl-phosphate synthase large chain [Spirochaeta thermophila
           DSM 6192]
          Length = 1071

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 107/313 (34%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V+      L+   +    + + A   + D+ + K+VV+S G+ V  S +
Sbjct: 89  TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGQFKEVVTSIGLDVPRSAM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +        I  P VI+P       G  +    +   L L ++   +   + LIE+
Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +    +D   I     +     +      +   +      +  K     
Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHTGDSVTVAPIQTLSDWEYQKMRTAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +        G S   F   P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 IEVLRAIGVDCGGSNVQFAVRPDTGRMVVIEMN--PRVSRSSALASKATGFPIARCAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEVINEI 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/247 (11%), Positives = 68/247 (27%), Gaps = 10/247 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             VG +L   +       L G    +          EI  T    +  A           
Sbjct: 618 EDVGEILKKERTKKVVVQLGGQTPLNMAEALEAAGAEIVGTPVRGIKEAEDRGFFADLVR 677

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   +             I  P +++P        + +      +   L +   
Sbjct: 678 RVGLNQPANRAARTLEEVRAFAEEIGYPVLLRPSFVLGGKSMFIAFSPDELEEFLRRGVE 737

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    +L++Q+  D  E     + D         +   +           ++    P K
Sbjct: 738 ISPDRPVLVDQFLEDAFEYDVDAVSDGENVYIGGIMQHIEAAGIHSG---DSACVFPPYK 794

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
              ++  +++       + +G +G     +        ++ LE+N +   T     P ++
Sbjct: 795 SNPEVLTQMKEATVKIARELGVKGFLNIQYAV--KDDVLYVLEVNPRASRT----VPYLS 848

Query: 279 AYAGYSF 285
             +G + 
Sbjct: 849 KASGVNM 855


>gi|322689606|ref|YP_004209340.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis 157F]
 gi|320460942|dbj|BAJ71562.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +LE   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|317481637|ref|ZP_07940672.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|322691567|ref|YP_004221137.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|316916927|gb|EFV38314.1| carbamoyl-phosphate synthase [Bifidobacterium sp. 12_1_47BFAA]
 gi|320456423|dbj|BAJ67045.1| carbamoyl phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +LE   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLEKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|91784542|ref|YP_559748.1| carbamoyl phosphate synthase large subunit [Burkholderia xenovorans
           LB400]
 gi|91688496|gb|ABE31696.1| carbamoyl-phosphate synthase large subunit [Burkholderia xenovorans
           LB400]
          Length = 1084

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 88/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQADIASQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|312132389|ref|YP_003999728.1| carb [Bifidobacterium longum subsp. longum BBMN68]
 gi|311772601|gb|ADQ02089.1| CarB [Bifidobacterium longum subsp. longum BBMN68]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|227546801|ref|ZP_03976850.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|227212763|gb|EEI80644.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           [Bifidobacterium longum subsp. infantis ATCC 55813]
 gi|291516174|emb|CBK69790.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum F8]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|239620781|ref|ZP_04663812.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|239516357|gb|EEQ56224.1| carbamoyl-phosphate synthase [Bifidobacterium longum subsp.
           infantis CCUG 52486]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|23336049|ref|ZP_00121278.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Bifidobacterium longum DJO10A]
 gi|23464695|ref|NP_695298.1| hypothetical protein BL0068 [Bifidobacterium longum NCC2705]
 gi|189438948|ref|YP_001954029.1| carbamoylphosphate synthase large subunit [Bifidobacterium longum
           DJO10A]
 gi|81847373|sp|Q8G815|CARB_BIFLO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226700923|sp|B3DQ32|CARB_BIFLD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|23325259|gb|AAN23934.1| CarB [Bifidobacterium longum NCC2705]
 gi|189427383|gb|ACD97531.1| Carbamoylphosphate synthase large subunit [Bifidobacterium longum
           DJO10A]
          Length = 1127

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|329122075|ref|ZP_08250683.1| carbamoyl-phosphate synthase, large subunit [Dialister
           micraerophilus DSM 19965]
 gi|327466882|gb|EGF12398.1| carbamoyl-phosphate synthase, large subunit [Dialister
           micraerophilus DSM 19965]
          Length = 1068

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 9/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++    P+       G    +         + I  + +  +  A   ++  +   
Sbjct: 615 EDVMEIIDKENPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   P    +      ++    +  P +++P        + ++     +   L ++  
Sbjct: 675 QLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPSYVLGGRAMQIVYNYAELRQYLKEAVV 734

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +H   +LI+QY+ G E+    + D+        + + +       +S  +     P  +
Sbjct: 735 ASHEHPVLIDQYMIGREVEIDAISDSIDVCIPGIMEQIERSG---VHSGDSFAVYPPQHL 791

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  ++         A+  +G+    F+      KV+ +E+N +   T     P M+ 
Sbjct: 792 NQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK--DKVYVIEVNPRASRT----VPFMSK 845

Query: 280 YAGYSFRELLLWM 292
             G +  E    +
Sbjct: 846 VTGINMVECATRI 858



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  +         DVD              +  ++   +PD     
Sbjct: 29  GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEIIKKERPDALLAT 88

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ     +LE   +    S + A   + D+   +      +  VP     
Sbjct: 89  LGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQKINQPVPESEIF 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D    +  P +I+P       G  + +    +     +    +  +Q+L+E+ 
Sbjct: 149 EELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIKLSPINQILVERS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                   +  +      +   + +S  V P     D   ++ R A
Sbjct: 209 VAG--WKEIEFEVMRDKSDNCIIVCAMENIDPVGVHTGDSIVVAPTLTLTDTQYQMMRKA 266

Query: 232 F-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                + +   G     +  D  + K + +E+N  P ++  S     +   GY   ++  
Sbjct: 267 SLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 322

Query: 291 WM 292
            +
Sbjct: 323 KI 324


>gi|313891643|ref|ZP_07825250.1| carbamoyl-phosphate synthase, large subunit [Dialister
           microaerophilus UPII 345-E]
 gi|313119921|gb|EFR43106.1| carbamoyl-phosphate synthase, large subunit [Dialister
           microaerophilus UPII 345-E]
          Length = 1068

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 9/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++    P+       G    +         + I  + +  +  A   ++  +   
Sbjct: 615 EDVMEIIDKENPEGVICQFGGQTAINLATPMAKRGIRIIGSSNESIDMAEDRERFDTLMG 674

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   P    +      ++    +  P +++P        + ++     +   L ++  
Sbjct: 675 QLNILRPKGCLVESIEEAIEKTKDLEYPLIVRPSYVLGGRAMQIVYNYAELRQYLKEAVV 734

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +H   +LI+QY+ G E+    + D+        + + +       +S  +     P  +
Sbjct: 735 ASHEHPVLIDQYMIGREVEIDAISDSIDVCIPGIMEQIERSG---VHSGDSFAVYPPQHL 791

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  ++         A+  +G+    F+      KV+ +E+N +   T     P M+ 
Sbjct: 792 NQKIIDKLVTYTKQIACAMNVKGLVNIQFIVVK--DKVYVIEVNPRASRT----VPFMSK 845

Query: 280 YAGYSFRELLLWM 292
             G +  E    +
Sbjct: 846 VTGINMVECATRI 858



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  +         DVD              +  ++   +PD     
Sbjct: 29  GSQACQSLREEGVEVVLVNSNPSTIMTDVDLADRVYIEPITLPFITEIIKKERPDALLAT 88

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ     +LE   +    S + A   + D+   +      +  VP     
Sbjct: 89  LGGQVGLNMAVQLASAGVLEKYNVKLLGSSLHAIKHAEDRELFKEAMQKINQPVPESEIF 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D    +  P +I+P       G  + +    +     +    +  +Q+L+E+ 
Sbjct: 149 EELQPAVDFAEKLGYPVIIRPAYTLGGTGGGIARDRYEMEEIANRGIKLSPINQILVERS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                   +  +      +   + +S  V P     D   ++ R A
Sbjct: 209 VAG--WKEIEFEVMRDKSDNCIIVCAMENIDPVGVHTGDSIVVAPTLTLTDTQYQMMRKA 266

Query: 232 F-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                + +   G     +  D  + K + +E+N  P ++  S     +   GY   ++  
Sbjct: 267 SLDIIRYLEIEGGCNVQYALDSKTNKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 322

Query: 291 WM 292
            +
Sbjct: 323 KI 324


>gi|78485224|ref|YP_391149.1| carbamoyl-phosphate synthase, large subunit [Thiomicrospira
           crunogena XCL-2]
 gi|78363510|gb|ABB41475.1| carbamoyl-phosphate synthase large subunit [Thiomicrospira
           crunogena XCL-2]
          Length = 1070

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 95/318 (29%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     ++V  ++A  +PD    
Sbjct: 29  SGVQACKALKEEGYRVVLVNSNPATIMTDPEMADATYIEPIEWKTVRNIIAKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L E      G  A A+   + R +   +   + +   +   
Sbjct: 89  TMGGQTALNCALDLDNHGVLEEFGVELIGANADAIDKAENRDRFRQAMNRIGLDMPVSDV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              ++    I      P +I+P       G  +                 +   +LLIE+
Sbjct: 149 AHNLEEAWEIQQRVGFPTIIRPSFTLGGSGGGIAYNKTEFEQICKFGLDLSPTKELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVVRDKNDNAIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F  +P S ++  +E+N  P ++  S        FP     A  
Sbjct: 269 LAVLREIGVETGGSNVQFSINPESGRMIIIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWMVEDAS 297
             GY+  EL   + + A+
Sbjct: 327 AVGYTLDELSNDITDGAT 344



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 98/322 (30%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A A+ + G++   +         D D   
Sbjct: 564 IMVLGGGPN-------RIGQGIEFDYCCVHAAMAMREDGYETIMVNCNPETVSTDYDTSD 616

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   KP        G              + I  T    +  A  
Sbjct: 617 RLYFEPLTLEDVLEIVEVEKPKGVIIQYGGQTPLKLAEDLEAAGVPIIGTSPESIDLAED 676

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +   + I  P V++P        + ++  D  +
Sbjct: 677 RERFQQLLHGLELKQPPNRTARSEDQALALANEIGYPLVVRPSYVLGGRAMEIVYNDTDL 736

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L+++++D  IEL    + D    V    +   +           
Sbjct: 737 TRYMTEAVKVSNDSPVLLDRFLDDAIELDVDAVCDGEQVVIGGVMEHIEQAGIHSG---D 793

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  IP+ I  E++         +   G+  + F        ++ LE+N +   T
Sbjct: 794 SACSLPPYSIPMHIQDEIRNQVEKMALGLNVVGLMNTQFAVKGED--IYVLEVNPRASRT 851

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 852 ----VPFVSKAIGSPLAKIAAR 869


>gi|312870006|ref|ZP_07730145.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris
           PB013-T2-3]
 gi|311094591|gb|EFQ52896.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus oris
           PB013-T2-3]
          Length = 1060

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   ++ +                       V  V+   +P+       G
Sbjct: 577 CVKALQALGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVMNVVDLEQPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         + I  T    L +A                 PV  +   ++  +D+
Sbjct: 637 QTAINLAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLDLKQPVGLTATTHQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L +++       +LI+ Y++G E    
Sbjct: 697 AKQIGYPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     DI +++         A+ C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDDDIKQQIVDATKKLAIALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           RGI    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 814 RGIMNIQFII--HDHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRKEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         +L+ L I    + + +   + D+ + K+++      VP   +
Sbjct: 89  TLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDEAEDREKFKELMQRLGEPVPASQT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   H I  P +++P       G  +   D+ +          +   Q LIE+
Sbjct: 149 VETVDEALVFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLDLSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADNAMVVCCMENFDPVGIHTGDSIVFAPSQTLSDRDYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|167756068|ref|ZP_02428195.1| hypothetical protein CLORAM_01588 [Clostridium ramosum DSM 1402]
 gi|237734054|ref|ZP_04564535.1| carbamoyl-phosphate synthase large subunit [Mollicutes bacterium
           D7]
 gi|167704060|gb|EDS18639.1| hypothetical protein CLORAM_01588 [Clostridium ramosum DSM 1402]
 gi|229382880|gb|EEO32971.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. D7]
          Length = 1065

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  I+        D+ +                ++   +PD     
Sbjct: 30  GTQACRALKEEGIEVVLINSNPATIMTDKDIADKVYIEPLTVPVVKSLIIKEQPDSILPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G    +  +    +  LE   +    +      L+ D++  K ++ +   P   S  +
Sbjct: 90  LGGQNALNIAMALADEGFLEEHNVQTIGTSTNTIKLAEDRLEFKTLMENINEPCAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 NHVDDALEFAKKIGYPVVVRPAYTLGGTGGGIAYDETELHDICSNGLRLSRVSQCLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+  +G     +  +P S +   +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIITALDIQGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 96/294 (32%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++AG+    +         D D              V  ++    PD A     G
Sbjct: 578 CVWALKEAGYDTIIVNNNPETVSTDFDIADRLYFEPLTPEDVENIVNIEHPDGAIVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                     +   ++I  T +  + +A   ++            P   ++      ++ 
Sbjct: 638 QTAIKLTKALMEMGVKILGTSADDVDAAEDRERFDEILEKCEIDRPRGSTVFTIEEALEV 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   D  +   +   +       +LI++Y+ G E+   
Sbjct: 698 ANRLKYPVLVRPSYVLGGAGMEICLNDGDVKKFMKIINRQYQEHPILIDKYLAGKEVEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S  V P  KI   I   +        +A+ 
Sbjct: 758 AICDENGILI----PGIMEHVERAGVHSGDSISVYPTQKIKQHIKDTIVEYTGRLAKALN 813

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G+    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 814 VIGLINIQFIV--YEDQVYVIEVNPRSSRT----IPYISKVTDIPVVDVATHVI 861


>gi|220918761|ref|YP_002494065.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219956615|gb|ACL66999.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1067

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +   + +L+   +      + A     D+   K+ ++  G+    S +
Sbjct: 89  NLGGQTGLNLSSELARKGVLDRYGVRVIGVNLEAIRRGEDRETFKETMTRLGIETARSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G       + +     +    +   Q+L+E+
Sbjct: 149 ATTLDQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E    +         +I V   +       ++  +        I  ++   +Q  
Sbjct: 209 SVLGWE-ELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTISPELQARLQDQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+    AI   G +   F  DP + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 SML 325



 Score = 37.5 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 81/268 (30%), Gaps = 13/268 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    +PD       G    D   Q     + I  T    + 
Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLDIARQLEEAGVRILGTSPETID 663

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P           +     +  P +++P       G+ V+  
Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVVHD 723

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++++   + ++   +    L +++++           DA  D T+  VP    +      
Sbjct: 724 EETLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTDAFVPAVMEHIELAGV 780

Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S   + P  +  +    ++         +G  G+    +        V+ LE N +
Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVIGLINVQYAI--AGGTVYVLEANPR 838

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              T     P ++         +   +V
Sbjct: 839 ASRT----VPLVSKVCDLPMARIAAQVV 862


>gi|167836214|ref|ZP_02463097.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis MSMB43]
          Length = 1084

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +     ++              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEANKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQSDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|154252760|ref|YP_001413584.1| carbamoyl-phosphate synthase large subunit [Parvibaculum
           lavamentivorans DS-1]
 gi|154156710|gb|ABS63927.1| carbamoyl-phosphate synthase, large subunit [Parvibaculum
           lavamentivorans DS-1]
          Length = 1079

 Score = 64.1 bits (154), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G+++  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACKALKDEGYRIILVNSNPATIMTDPELADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE   +    +   A  ++ D+   +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALADMGVLEKFGVEMIGAKREAIEMAEDRQLFRDAMDRIGLESPRSRV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +    Q     +      +  +++L+E+
Sbjct: 149 AHNMEEALAALEFVGLPAIIRPSFTMGGTGGGIAYNRQEFSDIIESGLDASPVNEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 42.9 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 59/165 (35%), Gaps = 10/165 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P VI+P       G+ +++    +   + ++   +    +LI+ Y  D IE+
Sbjct: 712 MIAERIGYPVVIRPSYVLGGRGMEIVRDAAHLDRYINEAVIVSGKSPVLIDYYLRDAIEV 771

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +  +   E++R       A
Sbjct: 772 DVDALCDGKDVVICGIMEHIEEAG---VHSGDSACSLPPYSLKRETIAEIERQTRDMALA 828

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   G+    +        ++ LE+N +   T     P +A   G
Sbjct: 829 LNVGGLMNVQYAI--QDGTIYVLEVNPRASRT----VPFVAKVIG 867


>gi|258511291|ref|YP_003184725.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478017|gb|ACV58336.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 1082

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQIIRKERPDGLLAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ         E +E+  T    +  A   +K R         VP    +
Sbjct: 90  LGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQEIGQPVPRSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +I+P       G  +    +     + +  + +   Q+L+EQ 
Sbjct: 150 RNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLTLSPIHQVLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             D T I V   +       ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDADGTAIVVCNMENMDPVGVHTGDSIVVAPSQTLSDEEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G +G        DP S + + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LQIIHALGIQGGCNVQLALDPDSSRYYVIEVN--PRVSRSS--ALASKATGYPIARIATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  G++   I+ +                       V  V+   +P+       G   
Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    + +A   +K  +         P   ++      +++   
Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + +I     +   + ++   +    +L+++YV+GIE     + 
Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+ + ++       Q++  +G+
Sbjct: 771 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLQVKGL 827

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F+      +V  +E+N +   T     P ++   G    +L
Sbjct: 828 MNVQFIV--HDGEVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866


>gi|157376535|ref|YP_001475135.1| carbamoyl phosphate synthase large subunit [Shewanella sediminis
           HAW-EB3]
 gi|157318909|gb|ABV38007.1| carbamoyl-phosphate synthase, large subunit [Shewanella sediminis
           HAW-EB3]
          Length = 1072

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +   + +LE   +    +   A   + D+ R  + + + G+    + +
Sbjct: 89  TMGGQTALNCALELESKGVLEEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLECPRAGI 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     +  P +I+P       G  +    +       Q    +   +LLI++
Sbjct: 149 AHTLDEANAVVAELGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLELSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      + S   
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLEMKQPENDTVTTVERAVISAER 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNASPVLLDRFLDNAIEIDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  DI   ++         +G  G
Sbjct: 767 CDGETVVVGSIMEHIEQAG---VHSGDSGCSLPPYSLSDDIQNRMREQVGKLAMELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDDEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|328951022|ref|YP_004368357.1| carbamoyl-phosphate synthase, large subunit [Marinithermus
           hydrothermalis DSM 14884]
 gi|328451346|gb|AEB12247.1| carbamoyl-phosphate synthase, large subunit [Marinithermus
           hydrothermalis DSM 14884]
          Length = 1030

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 89/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +AG++V  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQAVKALRNAGYQVVLVNSNPATIMTDPELAEATYIEPLTPEFIERIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G              +LE   +    +   A     D+   +  +   GV V    +
Sbjct: 89  TLGGQTALNLATALWEAGVLERYGVELIGANHEAIKKGEDREAFQAAMRKIGVEVPRGKM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +     +  P V++P       G      ++     L      +     L+E+
Sbjct: 149 VHSLEEGLAFAREVGYPVVVRPSFTLGGTGGGFAHSEEEFIRVLTAGLQQSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SILGWKEYELEVMRDHADTVVIITSIENLDPMGVHTGDSITVAPAQTLTDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 RAIIREIGVDTGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGYPIAKI 322



 Score = 36.0 bits (81), Expect = 7.8,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 85/290 (29%), Gaps = 33/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL++AGF+   +         D D +  L    L  +   N++             G   
Sbjct: 587 ALQEAGFETIMVNSNPETVSTDYDTADRLYFEPLTFEDVLNLVEHETPVGVILSLGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    + +A   +             P            +    
Sbjct: 647 LKLAKRLAEAGVPILGTPPEAIHTAEEREAFNRLTQSLGIPQPKGAVARDPLHAQELAET 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGIELTCGVM 182
           +  P +++P        + V++  + +   L +          ++ +QY++G        
Sbjct: 707 LGYPLMVRPSYVLGGRAMQVVRTPEELRRYLAEVYGALAEKPSILLDQYLEGALELDVDA 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 V    + +    +      S       P  +   + + V+       QA+G RG
Sbjct: 767 IADGERVVVAGIMEHVERAGVHSGDSATLLP--PTSLTPQLLETVKDYTRRLAQALGVRG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           +    +        V+ LE N +   T     P ++   G+    +  L+
Sbjct: 825 LLNVQYAV--KDDTVYVLEANPRASRT----VPFVSKAIGHPLAKYAALI 868


>gi|295677143|ref|YP_003605667.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1002]
 gi|295436986|gb|ADG16156.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1002]
          Length = 1088

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTRIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/305 (11%), Positives = 91/305 (29%), Gaps = 42/305 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-----------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   G+    F                   ++ LE+N +   T     P ++        
Sbjct: 821 LNVIGLMNVQFAIQQVPSATNAADGSKDDIIYVLEVNPRASRT----VPYVSKATSLPLA 876

Query: 287 ELLLW 291
           ++   
Sbjct: 877 KIAAR 881


>gi|229092932|ref|ZP_04224065.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42]
 gi|228690436|gb|EEL44220.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-42]
          Length = 1018

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +     +   PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLAIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|257875735|ref|ZP_05655388.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20]
 gi|257809901|gb|EEV38721.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC20]
          Length = 1069

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 38  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 97

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   +     +      +L + L         D  +         +P    
Sbjct: 98  LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 156

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +   ++ +          +   Q LIE+
Sbjct: 157 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 217 SIAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 275

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 276 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 331

Query: 291 WM 292
            +
Sbjct: 332 KI 333



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 587 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 646

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   ++I  T    L  A + D             P   +    +  +    
Sbjct: 647 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 706

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++    +   +  +   +    +L+++Y+ G E     +
Sbjct: 707 EIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   ++         + C G
Sbjct: 767 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++    +
Sbjct: 824 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 868


>gi|257866102|ref|ZP_05645755.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30]
 gi|257872433|ref|ZP_05652086.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10]
 gi|257800036|gb|EEV29088.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC30]
 gi|257806597|gb|EEV35419.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus EC10]
          Length = 1069

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 38  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 97

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   +     +      +L + L         D  +         +P    
Sbjct: 98  LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 156

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +   ++ +          +   Q LIE+
Sbjct: 157 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 217 SIAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 275

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 276 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 331

Query: 291 WM 292
            +
Sbjct: 332 KI 333



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 587 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 646

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   ++I  T    L  A + D             P   +    +  +    
Sbjct: 647 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 706

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++    +   +  +   +    +L+++Y+ G E     +
Sbjct: 707 EIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   ++         + C G
Sbjct: 767 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++    +
Sbjct: 824 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 868


>gi|222529369|ref|YP_002573251.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor
           bescii DSM 6725]
 gi|222456216|gb|ACM60478.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           bescii DSM 6725]
          Length = 1075

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 97/318 (30%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   K D    
Sbjct: 29  SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKEKVDSILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   +        +  S++   Q+L+E+
Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEDEFVEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDTLKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +   AL   G K   I         D D S  L    L  +   NV+          
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVKPEGIIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPPGFTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +   + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALRIANSLGYPVLVRPSYVLGGQGMKIAFDDNDIVEMLSYAKN-LNDHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I +++        
Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|257468426|ref|ZP_05632520.1| carbamoyl phosphate synthase large subunit [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062692|ref|ZP_07927177.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium
           ulcerans ATCC 49185]
 gi|313688368|gb|EFS25203.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium
           ulcerans ATCC 49185]
          Length = 1068

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 98/290 (33%), Gaps = 32/290 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  +L   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       +++  T +  +  A   ++            P   ++      ++  +
Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEELDIKRPKGRAVWDIEHGIEIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I+ P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIEL    +
Sbjct: 701 EINYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAV 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +   +    ++  + +   +A+  +
Sbjct: 761 CDGEEVLI----PGVMEHLERAGIHSGDSITIYPQQNLYEGTEDKILEITYKIAKALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G+    F+      +++ +E+N +   T     P ++  +G    E+   
Sbjct: 817 GMMNIQFI--AYENELYVIEVNPRSSRT----VPYISKVSGVPVIEIATR 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 46/316 (14%), Positives = 97/316 (30%), Gaps = 41/316 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+A  KPD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITLDFVEKVIAKEKPDSVIA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            + G  G +       + ILE   +    + + A     D+   ++ ++     +     
Sbjct: 88  GMGGQTGLNMVVELHEKGILEKYGVKVIGTSVEAIKKGEDREIFRETMNKLGEPIIQSKI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P V++P       G  +      +   L++  + +   Q+L+E+
Sbjct: 148 VETLEEGFEVAREIGYPVVVRPAYTLGGTGGGIANDPNELEDILMKGLALSMVGQVLLEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +     + ++  
Sbjct: 208 SIYGW-KEIEYEVIRDKNGNTIVVCNMENVDPVGIHTGDSIVVAPTQTLSDKECRMLRAS 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-- 288
           A      +G  G     F   P S +   +EIN  P ++  S     +   GY    +  
Sbjct: 267 AVKIVNEVGVIGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVST 322

Query: 289 -------LLWMVEDAS 297
                  L  ++ +A+
Sbjct: 323 KLAMGYTLNEIINEAT 338


>gi|289423681|ref|ZP_06425480.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           anaerobius 653-L]
 gi|289155931|gb|EFD04597.1| carbamoyl-phosphate synthase, large subunit [Peptostreptococcus
           anaerobius 653-L]
          Length = 1071

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  A   AL   G +   I         D D              V  ++   KP+    
Sbjct: 577 SVHAVM-ALRRLGIETIIINNNPETVSTDFDTSDKLYFEPLTEEDVYHIIEKEKPEGVIL 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G            + ++I  T    + +A   +K        +   P    +     
Sbjct: 636 QFGGQTAIKLAKFLSEKGVKILGTDFKDIDAAEDREKFEELLEKLNINRPKGKGVWSVAE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E
Sbjct: 696 GVEVATKLGYPVLVRPSYVLGGQGMEITYDETRLVQYLEDAFERDAINPVLIDKYLTGRE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + P++   D I +++        
Sbjct: 756 IEVDAICDGKDILI----PGIMEHLERAGVHSGDSITMYPSQRISDNIKEKIYDYTKKMA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +   G+    F+       ++ +E+N +   T     P ++  +G    +L   
Sbjct: 812 LNLNVVGMVNIQFI--EYKGDLYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/319 (13%), Positives = 97/319 (30%), Gaps = 42/319 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                       +   +   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLINSNPATIMTDQEIADHIYIEPLTLDFIEKTIEKERPDSILA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  ++           ++I  T    +      D  R         V     
Sbjct: 89  GMGGQTGLNLAIELHEAGILDKYNVKIIGTSVESIKKGEDRDLFREVMKEIGEPVIESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P V++P       G  + + +  +   L      +   Q L+E+
Sbjct: 149 VTTLDAGLEYALKIGYPVVVRPAYTLGGTGGGIAENEIELREILTHGLELSPVSQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229
            + G                      +      +   + +S  V P++   ++ Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSKGNCITVCNMENIDPVGVHTGDSIVVAPSQTLSNLEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +     AIG  G        +P S +   +EIN  P ++  S     +   GY   ++ 
Sbjct: 267 ASLKIIDAIGVEGGCNVQMALNPESLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVA 322

Query: 290 LWM--------VEDASCLR 300
             +        +++A   +
Sbjct: 323 AKIALGYSLDEIQNAVTKK 341


>gi|223984195|ref|ZP_03634343.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM
           12042]
 gi|223963810|gb|EEF68174.1| hypothetical protein HOLDEFILI_01636 [Holdemania filiformis DSM
           12042]
          Length = 729

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 95/288 (32%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP      L G   
Sbjct: 246 AIQQAGYEAIVINNNPETVSTDYSISDKLYFEPLCIEDVMNVIDLEKPQGVIVSLGGQTA 305

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T +  +  A + D             P+  ++      +   + 
Sbjct: 306 INLADRLNKLNVPIIGTGTEAIDKAENRDLFEKVVTECGIPQPLGQAVTNIEDGLKVANR 365

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ +D+ +   L  +   +    +L+++Y+ G E+    + 
Sbjct: 366 IGYPVLVRPSYVLGGRAMQIVHQDEELIEYLTSAVKIDQDQPVLVDKYIHGCEVEVDAIC 425

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  + +   P  +   +   +Q        AIG  G+
Sbjct: 426 DGKDVFIPGIMQLVEATG---VHSGDSMSVYPPYSLSDKVKATIQEYTVKLGLAIGIEGL 482

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F+ D  + +V  +E+N +   +  S  P ++   G     +   
Sbjct: 483 FNIQFIVDE-NDEVSVIEVNPR---SSRS-VPFLSKATGVPMANIATK 525


>gi|78777664|ref|YP_393979.1| carbamoyl phosphate synthase large subunit [Sulfurimonas
           denitrificans DSM 1251]
 gi|78498204|gb|ABB44744.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 1085

 Score = 64.1 bits (154), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+ + +                     +  ++   K D    
Sbjct: 29  SGTQAVKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPIREDIIAKIIKDEKVDAVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G            + +LE +E        +             +     +P   +  
Sbjct: 89  TMGGQTALNVATSMYKKGMLEGVEFLGASPEAIHKGEDRSAFNKAMIKIGMDLPKSRNAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++    I  P + +     +  G  V    +   +   +  S +   ++ I + +
Sbjct: 149 SVEEALEVALEIGFPVISRASFTLAGGGSGVAYNMEEFKILAQEGISASPVSEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFD 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/262 (12%), Positives = 90/262 (34%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ + KPD    ++H        +   L  +      +      L+ D
Sbjct: 616 FEPIDF-EHVREVIENEKPDGV--IVHFGGQTPLKLANALTKIGANIAGTPSHVIDLAED 672

Query: 93  KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V+S G+    +          D    +  P +++P       G+ ++   + +
Sbjct: 673 REQFSNFVNSHGLKQPANGLARTKDEAHDIALRLGFPVLVRPSYVLGGRGMRIVYSQEEL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  +   ++   +L+++++D  IEL    + D         +   +           
Sbjct: 733 RQYMDLAVLVSNDAPVLVDKFLDQAIELDVDAICDGVDVYIGSVMQHIEEAGIHSG---D 789

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  +V+         +G RG+    +       +++ +E+N +   T
Sbjct: 790 SACSLPPVSLSKELIDQVEAQTKTIALGLGVRGLMNVQYAI--YQDEIYLIEVNPRASRT 847

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 848 ----VPFVSKATGMPLAKVATR 865


>gi|218290464|ref|ZP_03494584.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218239485|gb|EED06680.1| carbamoyl-phosphate synthase, large subunit [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 1082

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVVLVNSNPATIMTDEHMADRVYIEPITLDFVTQIIRKERPDGLLAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ         E +E+  T    +  A   +K R         VP    +
Sbjct: 90  LGGQTGLNMAVQLAKAGVLEAEGVELLGTPLEAIEKAEDREKFRQLMQEIGQPVPRSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +I+P       G  +    +     + +  + +   Q+L+EQ 
Sbjct: 150 RNQAEADAFAEEVGFPIIIRPAYTLGGTGGGIASNWREYHEIVERGLTLSPIHQVLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             D T I V   +       ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDADGTAIVVCNMENMDPVGVHTGDSIVVAPSQTLSDEEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G +G        DP S + + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LQIIHALGIQGGCNVQLALDPHSSRYYVIEVN--PRVSRSS--ALASKATGYPIARIATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  G++   I+ +                       V  V+   +P+       G   
Sbjct: 591 ALQREGYEAVVINNNPETVSTDFSTSDRLYFEPLDVEDVLNVIDREQPEGVIVQFGGQTA 650

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    + +A   +K  +         P   ++      +++   
Sbjct: 651 INLAGPLADAGVRIFGTSRESIDAAEDREKFDALLTQLGIQRPEGRTVTTVEAAVEAAES 710

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + +I     +   + ++   +    +L+++YV+GIE     + 
Sbjct: 711 LGYPVLVRPSYVLGGRAMQIITNTNELLQYMEEAVEVSQQHPVLVDRYVNGIEAEVDAIS 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+ + ++       Q++  +G+
Sbjct: 771 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQNLTEDVKRIIEDHTIRIAQSLNVKGL 827

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F+      +V  +E+N +   T     P ++   G    +L
Sbjct: 828 MNVQFIV--HDGQVEVIEVNPRSSRT----VPFLSKVTGVPMVQL 866


>gi|209517190|ref|ZP_03266035.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160]
 gi|209502326|gb|EEA02337.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp. H160]
          Length = 1084

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 86/309 (27%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLAKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALAVQAKIAAETGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKATVAELKRQTAAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKDDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|251796812|ref|YP_003011543.1| urea carboxylase [Paenibacillus sp. JDR-2]
 gi|247544438|gb|ACT01457.1| urea carboxylase [Paenibacillus sp. JDR-2]
          Length = 1215

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 37/187 (19%), Positives = 72/187 (38%), Gaps = 24/187 (12%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P ++K   GG  +G+ V + ++++              + +G   L +     
Sbjct: 146 HAAEIGYPVILKSTAGGGGIGMRVCEDEEALRAAFDSVRHLAEANFKNGGMFLEKYIAKA 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   + G+ + +V  +            K    +     P ++  +I    +RLA  A
Sbjct: 206 RHVEVQIFGNGNGEVVALGERDCSVQRRNQKVVEESPAPQFPEEVRTEILACAKRLAAEA 265

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290
               G R     +FL+DP S K ++LE+N +     G+T            G    +L+ 
Sbjct: 266 ----GYRSAGTVEFLYDPSSFKFYFLEVNTRLQVEHGVTE--------EVLGL---DLVE 310

Query: 291 WMVEDAS 297
           WMV++A+
Sbjct: 311 WMVKEAA 317


>gi|315185545|gb|EFU19314.1| carbamoyl-phosphate synthase large subunit [Spirochaeta thermophila
           DSM 6578]
          Length = 1071

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 51/313 (16%), Positives = 107/313 (34%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRVILVNPNPATIMTTPGLADVVYMEPLEVPYLEEIIRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  V+      L+   +    + + A   + D+ + K+VV+S G+ V  S +
Sbjct: 89  TMGGQTGLNLSVELYEAGVLDRYGVELIGANVEAIRKAEDRGKFKEVVTSIGLDVPRSAM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +        I  P VI+P       G  +    +   L L ++   +   + LIE+
Sbjct: 149 VKSLQEGRKVMEEIGLPLVIRPSFTLGGKGGSIASTPEDFELLLERALLESPVHEALIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +    +D   I     +     +      +   +      +  K     
Sbjct: 209 SLLGWKEFELEVMRDHMDNAVIVCSIENIDPMGVHTGDSVTVAPIQTLSDWEYQKMRTAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +        G S   F   P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 IEVLRAIGVDCGGSNVQFAVRPDTGRMVVIEMN--PRVSRSSALASKATGFPIARCAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEVINEI 339



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 53/167 (31%), Gaps = 10/167 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + +      +   L +    +    +L++Q+  D  E  
Sbjct: 698 FAEEIGYPVLLRPSFVLGGKSMFIAFSPDELEEFLRRGVEISPERPVLVDQFLEDAFEYD 757

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++    P K   ++  +++       +A+
Sbjct: 758 VDAVSDGENVYIGGIMQHIEAAGIHSG---DSACVFPPYKSNPEVLTQMKDATVKIARAL 814

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           G  G     +        ++ LE+N +   T     P ++  +G + 
Sbjct: 815 GVEGFLNIQYAV--KDDVLYVLEVNPRASRT----VPYLSKASGVNM 855


>gi|148244935|ref|YP_001219629.1| carbamoyl-phosphate synthase large subunit [Candidatus
           Vesicomyosocius okutanii HA]
 gi|146326762|dbj|BAF61905.1| carbamoyl-phosphate synthase large subunit [Candidatus
           Vesicomyosocius okutanii HA]
          Length = 1068

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG    SAL + G++V  +         D              R V  ++   KPD    
Sbjct: 29  SGAQACSALREEGYRVILVNSNPATIMTDPTMADSTYIEPIEWRIVEKIIEVEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +L+   +    +   A   + D+   ++ +   G+ +  +  
Sbjct: 89  TMGGQTALNCALDLERHGVLDKHCVEMIGAKKEAINKAEDRDLFREAMLKIGLDMPKAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P VI+P       G  +                 +  ++LL+E+
Sbjct: 149 AHNMEEAFTIQETVGFPTVIRPSFTMGGSGGGIAYNKDEFVKICECGLDLSPINELLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SILGWKEFELEVIRDRKDNCIIICSIENFDPIGIHTGDSITVAPAQTLTDKEYQAMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFALNPENGRLTIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 95/291 (32%), Gaps = 35/291 (12%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +           D+             V  ++    PD    ++H    
Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDVLAIIDIENPDGI--IVHYGGQ 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQ 121
               +   LE        +   A  L+ D+ R  +++    +      +        D  
Sbjct: 645 TPLKLAKALEKSGANIIGTTPDAIDLAEDRERFSKMLQDLKLKQPLNGTARSLEQAQDIA 704

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
           + I  P V++P        + ++    S+   +  +   ++   +L++ ++D  IE+   
Sbjct: 705 NAIGFPLVVRPSYVLGGRAMKIVYDKDSLEHYMYTAVKVSNDSPILLDSFLDHAIEVDID 764

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +           ++  + P  +   +  E++    L  + +  
Sbjct: 765 AICDGENVVIGGIMQHIEQAGIHSG---DSACSLPPYSLTNKVLDEMRAQVILMAKKLNV 821

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+  +   +   + +++ +E+N +   T     P ++   G     +   
Sbjct: 822 VGLMNTQLAY--QNGEIYIIEVNPRASRT----VPFVSKAIGVPLANIAAR 866


>gi|283795621|ref|ZP_06344774.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|291077292|gb|EFE14656.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
          Length = 1088

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 31/288 (10%), Positives = 88/288 (30%), Gaps = 30/288 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C   L+  G++V  ++                         V  +L   KP        G
Sbjct: 577 CVQVLKGLGYEVVIVNNNPETVSTDFDTADRLYFEPLTTEDVKNILQAEKPCGVVVAFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + +  T +  +  A   ++            P   +++     + +
Sbjct: 637 QTAIRLTRFLAESGVPVIGTCADSIDMAEDRERFDELLDRLHIAKPKGHTVMTEEEAIRA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        +I+   +  I   +    + N  + +LI++Y++G E+   
Sbjct: 697 AESVGYPVLMRPSYVLGGQNMIIAFDEADIREYMKIILAQNIENPVLIDKYLEGTEIEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +           +        +  +  +++        + +  
Sbjct: 757 AIYDGTDILLPGIMEHVERSGIHSG---DSIAIYPAMHLTPETEEKIAETTKKLCEGLNA 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            GI    ++      +++ +E+N +   T     P ++   G    +L
Sbjct: 814 VGIVNVQYIV--ADGEIYIIEVNPRASRT----VPYLSKVTGVPMVDL 855



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G ++  ++ +                      +V  ++   KPD   + 
Sbjct: 30  GAQACRALREEGLEIVLVNSNPATIMTDHMMADRIYIEPLTLETVKRIIEKEKPDSILSG 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      LE   +    S       + D+   K  + S G P  PS  +
Sbjct: 90  LGGQTGLTLCMQLAHDGFLEEHGVKLLGSSPETIDRAEDRQLFKDTMESIGQPCVPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +        + +   Q+L+E+ 
Sbjct: 150 NETEDALEFAKTIGYPVIVRPAFTLGGTGGGIADSEEELREIARNGLALSPIHQILVEKG 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +F    +                 + Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDRTGNCITVCSMENFDPVGIHTGDSIVIAPAVTLADRE-YQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIVDTLQVEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|283779305|ref|YP_003370060.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM
           6068]
 gi|283437758|gb|ADB16200.1| carbamoyl-phosphate synthase, large subunit [Pirellula staleyi DSM
           6068]
          Length = 1095

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+ V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYVVVLVNSNPATIMTDPEMADRTYIEPLTWEVVSKVIEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  +      +LE   +    +     A + ++ + KQ +   G+  C    
Sbjct: 89  TLGGQTGLNLAMDLAKHGVLEKYGVEMIGANAKVIAKAEEREQFKQAMEKIGLECCRGET 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I           ++  P V++P       G  +        + + +    +   ++LIE+
Sbjct: 149 IKTVEDARRVLQMVGLPCVVRPSFTLGGSGSAIAYNQGEFDMLVRRGLDQSPVREVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVMRDMDDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVIREIGVETGGSNIQFAIHPQTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/169 (13%), Positives = 60/169 (35%), Gaps = 10/169 (5%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            +  P +++P        + +          + ++     G  +LI+++  D  E+    
Sbjct: 712 KVGFPSLVRPSFVLGGRAMEICYDQAQFERFVAEAFVVAQGQPVLIDRFLEDATEVDVDC 771

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++  + P  +P  + +E++       + +   
Sbjct: 772 ISDGENVVIAGIMEHIEEAG---VHSGDSACAIPPYSLPGPVIQEIREATHAMARHLKVV 828

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F       +  ++ LE+N +   T     P +A   G S  ++
Sbjct: 829 GLMNVQFAVKKEEGRPVIYILEVNPRASRT----VPFVAKATGLSVAKI 873


>gi|319892195|ref|YP_004149070.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317161891|gb|ADV05434.1| Carbamoyl-phosphate synthase large chain [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464704|gb|ADX76857.1| carbamoyl-phosphate synthase, large subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 1057

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 102/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDKEIADKVYIEPLTHDFIARIIRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  ++      L    +    + + +   + D+   + +++   VPV  S +V
Sbjct: 90  LGGQTGLNMAIELHNSGVLAENNVTLLGTKLSSIEQAEDRELFRSLMNDLNVPVPESDIV 149

Query: 114 NRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N           +  P +++P       G  +   D+ +   +     ++   Q LIE+ 
Sbjct: 150 NTLEQAFAFKEAVGYPLIVRPAFTMGGTGGGICHNDEELREVVSNGLKYSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGIHTGDSVVVAPSQTLSDVEYQMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKVIRALEIEGGCNVQLALDPHSMQFYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIQNAGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIINLEQPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A    +  +         P   +    +  +D+   
Sbjct: 640 INLADKLAKYGVKILGTSLEDLNRAEDRKEFEALLNKIDVPQPKGKTATSAQEALDNARD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + ++   +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYNDAELENYMNEAVKASPEHPVLVDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  D+   ++       + +   G+
Sbjct: 760 DGETVMIPGIMEHIERAG---VHSGDSIAVYPPQTLSQDVIDTLEAYTIKLAKGLNVIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++        +L +  +
Sbjct: 817 INIQFVLAHDG--VYVLEVNPRASRT----VPFLSKITEIQMAQLAMQAI 860


>gi|256829553|ref|YP_003158281.1| hypothetical protein Dbac_1774 [Desulfomicrobium baculatum DSM
           4028]
 gi|256578729|gb|ACU89865.1| protein of unknown function DUF201 [Desulfomicrobium baculatum DSM
           4028]
          Length = 340

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 58/301 (19%), Positives = 118/301 (39%), Gaps = 24/301 (7%)

Query: 19  GKACASALEDAGFKV--SQIDVDRS-VGLVLAHLKPDLAFNV---LHGNFGEDGLVQAIL 72
            ++   +L   G++     +  D S +   LAH +P++ FN+    HG      L  A+ 
Sbjct: 28  ARSVRESLARCGWRTSEHVLGSDPSALETSLAHRRPNVIFNLVESCHGLASLACLAPALF 87

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYV 129
                P+T +   + AL+ DK  +++++ + G+PV P + +    R              
Sbjct: 88  RKAGFPFTGADEGSMALAGDKALARRLLHAAGLPVPPGVTMGELQRGVFPGPGTYIIKAR 147

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA---- 185
            +    G     +V  ++ +  L  ++  +   G   + E YV G E    ++ +     
Sbjct: 148 FEDASLGLGPDCVVDVREGAELLAAMREFAPRMGGDCVAEGYVRGREFNLALLAEPGGGV 207

Query: 186 -----SLDVTEIAVPKSDFYSYELKYSSLNSTH-----VLPAKIPLDIYKEVQRLAFLAH 235
                +  V + A+P      Y  K+   ++ +             D+  E++R+     
Sbjct: 208 RDLPLAEMVFDSAMPGPAILHYAAKWDQGSADYAASVRSFDLDGEEDLVLEMKRIGRACW 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +     G +R DF       +++ +++N  P +TP + F   A  AG     L+  +V D
Sbjct: 268 ELFNLAGYARIDFRVAGP-GQIYVIDVNPNPCITPDAGFAAAAQRAGLDHAALVQEIVFD 326

Query: 296 A 296
           A
Sbjct: 327 A 327


>gi|223984193|ref|ZP_03634342.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM
           12042]
 gi|223963851|gb|EEF68214.1| hypothetical protein HOLDEFILI_01635 [Holdemania filiformis DSM
           12042]
          Length = 330

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  I+        D ++                ++   +PD     
Sbjct: 30  GTQACLALREEGYEVILINSNPATIMTDTNIADKVYMEPLTLEYVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           L G  G +  +Q     +LE        +   +   + D+ R K +    G P   S   
Sbjct: 90  LGGQTGLNMAMQLAKKGVLEECRCEILGTDFESIDQAEDRQRFKDLCLRIGQPCLESYVA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P V++P       G      D  +      +   +   ++L+E+ 
Sbjct: 150 RTIEEVVEYANKIGYPVVLRPAFTLGGTGGGFAYDDAEVIALGKNALKLSPVSEVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++  A
Sbjct: 210 IKG-YKEIEFEVMRDHNDTAIVICSMENIDPVGVHTGDSMVVAPCQTLSNKEYQLLRNAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     F  DP S   + +E+N  P ++  S     +  AG+    +   
Sbjct: 269 LTLIRELKIEGGCNVQFALDPFSFDYYVIEVN--PRVSRSS--ALASKAAGFPIARVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|325845260|ref|ZP_08168564.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1]
 gi|325488701|gb|EGC91106.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sp. HGF1]
          Length = 1061

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++                         +  ++   +PD     
Sbjct: 30  GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKIIRKERPDAVLPS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+   + +               +  A   D  R         +P    +
Sbjct: 90  LGGQTGLNLVVELAEDGILRECNVEILGTDLSAIKKAEDRDLFRELMFELKQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  ++  + ++ + +    + +   Q LIE+ 
Sbjct: 150 NTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVENGLNLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLADREYHMLREVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIIRALGIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P+       G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   D+            P+  +       ++  + 
Sbjct: 640 INLASKLQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +I  D  I   + ++   N  + +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLLRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + + +        + +   G+
Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+      +V+ LE+N       P ++ ++  P  
Sbjct: 817 LNIQFVVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854


>gi|325570248|ref|ZP_08146114.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC
           12755]
 gi|325156731|gb|EGC68905.1| carbamoyl-phosphate synthase [Enterococcus casseliflavus ATCC
           12755]
          Length = 1061

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITFEFVSRILRKEQPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   +     +      +L + L         D  +         +P    
Sbjct: 90  LGGQTGLN-MAMELANSGILDELGIELLGTKLAAIDQAEDRDLFKQLMEELDQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +   ++ +          +   Q LIE+
Sbjct: 149 VSTVEAAVEFAKKIGFPIIVRPAFTLGGTGGGMCNNEEELRQIAENGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLHVIDLEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   ++I  T    L  A + D             P   +    +  +    
Sbjct: 639 AINLAEPLVKAGVKILGTSIEDLDRAENRDLFEQALQALDIPQPPGDTATNEQEAIAIAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++    +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMEIVENQADLEDYMRHAVKASPEHPVLVDRYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   ++         + C G
Sbjct: 759 CDGKTVLIPGIMEHIERAG---VHSGDSMAVYPPQNLSDELIATIEEYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++    +
Sbjct: 816 MMNIQFVIHE--NKVYVIEVNPRASRT----VPFLSKVTEIPMAQIATKAI 860


>gi|293376106|ref|ZP_06622356.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis
           PC909]
 gi|292645260|gb|EFF63320.1| carbamoyl-phosphate synthase, large subunit [Turicibacter sanguinis
           PC909]
          Length = 1061

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++                         +  ++   +PD     
Sbjct: 30  GTQACQSLKEEGYEVILVNSNPATIMTDTEVADKVYMEPLTKEFLSKIIRKERPDAVLPS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+   + +               +  A   D  R         +P    +
Sbjct: 90  LGGQTGLNLVVELAEDGILRECNVEILGTDLSAIKKAEDRDLFRELMFELKQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  ++  + ++ + +    + +   Q LIE+ 
Sbjct: 150 NTVEEAVAFANTIGYPIIVRPAFTLGGTGGGIVADEAALRVTVENGLNLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENFDPVGIHTGDSIVVAPSQTLADREYHMLREVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LTIIRALGIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 90/279 (32%), Gaps = 30/279 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P+       G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   D+            P+  +       ++  + 
Sbjct: 640 INLASKLQERGIKILGTSLENIDRAEDRDQFEKLLRELEVPQPLGSTCQSVEGALEIANR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +I  D  I   + ++   N  + +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLLRPSYVLGGRAMEIIDNDAEIERYMKEALKENGENPILIDRYLTGKEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + + +        + +   G+
Sbjct: 760 DGENVYIPGIMEHIERAG---VHSGDSMAVYPPQTLSDKVMELLVDYTTRIARGLKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+      +V+ LE+N       P ++ ++  P  
Sbjct: 817 LNIQFVVTKEE-EVYVLEVNPRSSRTVPFLSKITNVPMA 854


>gi|254424145|ref|ZP_05037863.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7335]
 gi|196191634|gb|EDX86598.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7335]
          Length = 1070

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              +  V+   +PD    
Sbjct: 19  SGTQACKALREEGYEVVLVNSNPATIMTDPDIADRTYIEPLTADLLEQVIVRERPDALLP 78

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         +L+   +    + + A   + D+   K+ +   GV VCPS  
Sbjct: 79  TMGGQTALNLAVELAKCGVLDKYGVELIGAKLEAIEKAEDRKLFKEAMLKIGVGVCPSGL 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +Q + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 139 AETMDESWEINQQIGSYPLIIRPAFTMGGSGGGIAYNKEEFETICRSGLEASPVSQILIE 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 199 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +  
Sbjct: 259 SIKIIREIGVETGGSNIQFSVNPDTGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 314

Query: 290 LWM 292
             +
Sbjct: 315 AKL 317



 Score = 36.0 bits (81), Expect = 6.8,   Method: Composition-based stats.
 Identities = 20/168 (11%), Positives = 56/168 (33%), Gaps = 7/168 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D+ +   +  +        +LI+++++   +   
Sbjct: 702 AREIDYPVVVRPSYVLGGRAMEIVYSDEDLVRYMTTAVQVEPDHPILIDKFLEN-AIEVD 760

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A    T +     +       +S  ++  +    +       ++   F   + +  
Sbjct: 761 VDAIADRTGTAVIGGIMEHIEQAGIHSGDSACTLPTVSLSEAALATIRDWTFKLAKRLNV 820

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    +       +V+ +E N +   T     P ++   G    +L
Sbjct: 821 IGLMNIQYAI--RGEQVYIIEANPRASRT----VPFVSKATGARLAQL 862


>gi|34558426|ref|NP_908241.1| carbamoyl phosphate synthase large subunit [Wolinella succinogenes
           DSM 1740]
 gi|34484145|emb|CAE11141.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Wolinella succinogenes]
          Length = 1089

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSV-GLVLAHLKPDLAFN 56
           SG   A  L+  G+KV  I+                    +   +   ++   K D    
Sbjct: 29  SGTQAAKTLKSLGYKVVLINSNPATIMTDPEFADRTYIEPITEEIVQDIIRKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    +  +    + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNIAMSMHNKGMLEDVVFLGAKPEAIKKGEDRQAFKEAMQKIGMDLPLSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +I+     +  G  V    +            +   ++LIE+ +
Sbjct: 149 NMEEAMIAAKEIGFPLIIRASFTLAGGGSGVAYNIEEFKQLAQNGLEISPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSIHPETGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 42.2 bits (97), Expect = 0.095,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 92/262 (35%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+   KPD    ++H        +   L  +      +      ++ D
Sbjct: 619 FEPIDF-EHVRSVIEREKPDGV--IVHFGGQTPLKLAKNLTRIGANIIGTSAKVIDVAED 675

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + V   G+      +        +  + I  P +++P        + ++   + +
Sbjct: 676 REKFSRFVEENGLKQPENGTAFTKEEAHEIANRIGFPVLVRPSYVLGGRAMRIVYNQEEL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
            L + ++ S ++   +LI++++D  IEL    + D         +   +           
Sbjct: 736 KLYMEEAVSVSNESPVLIDKFLDNAIELDVDAISDGQKVYVAGIMQHIEEAGIHSG---D 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  +    I   + KE++ L      A+G +G+  + +        ++ +E+N +   T
Sbjct: 793 SACSLPAVSIEPALLKELEHLTAKIALALGVKGLMNTQYAI--HKGMIYLIEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPFVSKATGIPLAKVATR 868


>gi|220907091|ref|YP_002482402.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. PCC
           7425]
 gi|219863702|gb|ACL44041.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. PCC
           7425]
          Length = 1107

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 103/304 (33%), Gaps = 34/304 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL D G++V  I         D D +            V  V+A  +PD    
Sbjct: 29  SGTQACKALRDEGYEVVLINSNPATIMTDPDTADRTYIEPLTPELVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         +LE   +    + + A   + D+   K+V+   GV VCPS  
Sbjct: 89  TMGGQTALNLAVTLAKTGVLEKYGVELIGAKLPAIEKAEDRKLFKEVMEEIGVGVCPSGL 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +Q +   P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 AENMAEAKAIAQRIGVYPLIIRPAFTLGGTGGGIAYNQEEFEEIAQSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +       ++  + T      +    Y+ ++ 
Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENLDPMG-IHTGDSITVAPAQTLTDKEYQRLRD 267

Query: 230 LAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +    +AIG   G S   F  +P +  V  +E+N  P ++  S     +   G+   + 
Sbjct: 268 ASIKIIRAIGVETGGSNIQFAVNPENGDVIVIEMN--PRVSRSS--ALASKATGFPIAKF 323

Query: 289 LLWM 292
              +
Sbjct: 324 AAKL 327



 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 57/172 (33%), Gaps = 7/172 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              IS P V++P        + ++  D  +   +  +        +LI+++++   +   
Sbjct: 736 ARRISYPVVVRPSYVLGGRAMEIVYSDAELERYMTYAVQVEPDHPILIDKFLEN-AIEVD 794

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A      +     +       +S  ++  +    +   +   ++  A    + +  
Sbjct: 795 VDAIADGQGNVVIGGVMEHIEQAGIHSGDSACTLPAQSLSNQVLDTIRTWAIALAKQLEV 854

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    F       +V+ LE N +   T     P ++   G    ++   +
Sbjct: 855 VGLMNLQFAV--QGEQVYILEANPRASRT----VPFVSKAIGLPLAQIAARL 900


>gi|119513297|ref|ZP_01632337.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena
           CCY9414]
 gi|119462060|gb|EAW43057.1| carbamoyl-phosphate synthase large subunit [Nodularia spumigena
           CCY9414]
          Length = 1088

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPDFVEKVIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    + + A   + D+    + ++  GV VCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGALDKYNVELIGAKLPAIEKAEDRKLFNEAMAKIGVAVCPSGT 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        +  + + P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLAESKEIAAKIGTYPLIIRPAFTMGGTGGGIAYNKEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVTGDVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 93/299 (31%), Gaps = 36/299 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+ AGF+   ++                         V  ++   KP        G   
Sbjct: 586 ALKKAGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVINIIEAEKPVGVIIQFGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSGIL-----ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
               V     L   P   + I      +  ++ ++ R +++++   +   P+        
Sbjct: 646 LKLAVPLEEFLKNHPSLPTKIWGTSPDSIDMAENRERFEKILNELNIAQPPNGIARSYDD 705

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P V++P        + ++  D  +   +  +        +LI+++++   
Sbjct: 706 ALIVAKRIGYPVVVRPSYVLGGRAMEIVYSDTDLERYMTFAVLVEPEHPILIDKFLEN-A 764

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V   A      +     +       +S  ++  +    +   + ++++       Q
Sbjct: 765 IEVDVDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLSPAVLQQIRTWTVQLAQ 824

Query: 237 AIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+   G+    F          +V+ LE N +   T     P ++   G    ++   +
Sbjct: 825 ALSVVGLMNIQFAVVGAQGYSPQVYILEANPRASRT----VPFVSKSTGIPLAKVASLI 879


>gi|283781145|ref|YP_003371900.1| GCN5-like N-acetyltransferase [Pirellula staleyi DSM 6068]
 gi|283439598|gb|ADB18040.1| GCN5-related N-acetyltransferase [Pirellula staleyi DSM 6068]
          Length = 508

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 59/303 (19%), Positives = 115/303 (37%), Gaps = 27/303 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSV---GLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELL 75
              A   AG+ V   +          +L   + D+ FN++    G+     L   ++E  
Sbjct: 30  VEQACRAAGWPVEVCETSLDFTRVDQLLTSGRFDVVFNLVESLAGSDQLAELFVRLVEAR 89

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
            +P T S   A  LS DK+ +KQ++    +P            ++   + PP+++K +  
Sbjct: 90  GVPITGSSARALQLSNDKIATKQLLREKQLPTAAW-CTLDDAGNASAELRPPWIVKAIGQ 148

Query: 136 GSS---LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC---------GVMG 183
            +S       V+    +     +++ +   G     EQ++DG E             V+ 
Sbjct: 149 HASLGLDDSCVVLGPAADVAAAIRAQAARLGTPCFAEQFIDGREFNVSLLATEQGVEVLP 208

Query: 184 DASLDVTEIAVPKSDFYSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
            A +   +    K     Y+ K+       +              +   +++L+  A ++
Sbjct: 209 IAEILFVDFPAGKPRIVGYDAKWSADSAEFTGTPRTFDFPASDGPLLALLEKLSREAWKS 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +   G +R DF  D  + +   LE+N  P ++P + F   AA +G S  E +  +V  A 
Sbjct: 269 LQLSGYARIDFRVDQQA-QPLLLEVNTNPCLSPDAGFAAAAAQSGRSLEEAIQQIV-LAP 326

Query: 298 CLR 300
             R
Sbjct: 327 LRR 329


>gi|329121679|ref|ZP_08250296.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965]
 gi|327468149|gb|EGF13635.1| pyruvate carboxylase [Dialister micraerophilus DSM 19965]
          Length = 1142

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 76/286 (26%), Gaps = 44/286 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48
                 A ++ G +   +                                   +  +   
Sbjct: 16  AIRVFRACKELGIRTVAVYSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKE 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D      +G   E+  +        I +         +  DK+ +++      +P+ 
Sbjct: 76  HNVDAVHPG-YGFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMI 134

Query: 109 PSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P             +       P +IK + GG   G+  +     +      + +     
Sbjct: 135 PGTHGAVKSFDDVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLA 194

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   +       V+   +   ++GD   ++  +            K   +     LP   
Sbjct: 195 FGDDEVYAERCVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQKVIEMAPAWSLPL-- 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ K +   A    + +        +FL D   +  +++E+N +
Sbjct: 253 --ELRKRICDAAVKLMKNVKYLNAGTVEFLVDENKKDFYFIEVNPR 296


>gi|220917308|ref|YP_002492612.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
 gi|219955162|gb|ACL65546.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter
           dehalogenans 2CP-1]
          Length = 1077

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G    +          L    +    + + A   + D+   +         +P    
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +  +  
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LRIIREIGVETGGSNIQFGVHPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 31/285 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL  AGF+   +         D D S  L    L  +    ++H            G   
Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++  +         P               H 
Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHR 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + V+  D+ +   L ++   ++   +LI+++  D  E+   V+
Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++  + P  +  +   E++R +    + +G  G
Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLRPEHVAEIERQSVAMARELGVIG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    F        ++ LE+N +   T     P +    G    +
Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864


>gi|197122523|ref|YP_002134474.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K]
 gi|196172372|gb|ACG73345.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           K]
          Length = 1077

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G    +          L    +    + + A   + D+   +         +P    
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +  +  
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LRIIREIGVETGGSNIQFGVHPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 31/285 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL  AGF+   +         D D S  L    L  +    ++H            G   
Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++  +         P               H 
Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVAHR 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + V+  D+ +   L ++   ++   +LI+++  D  E+   V+
Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++  + P  +      E++R +    + +G  G
Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLSPAHVAEIERQSVAMARELGVIG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    F        ++ LE+N +   T     P +    G    +
Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864


>gi|332976369|gb|EGK13221.1| carbamoyl-phosphate synthase, large subunit [Desmospora sp. 8437]
          Length = 1073

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  +         D D              +  V+   +PD     
Sbjct: 30  GTQACQSLREEGVEVVLVNSNPATIMTDTDVADKVYIEPMTPEFLTQVIRKERPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    +
Sbjct: 90  LGGQTGLNLAVELAEAGVLEREGVRLLGTDLHAITCAEDREQFRSLMREIGEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P +++P       G  + + +  +   +      +   Q LIEQ 
Sbjct: 150 HSVEEAVRFAERTGYPVIVRPAYTLGGTGGGIAETEAELRETVENGIHHSPIGQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    ++ ++  A
Sbjct: 210 IAG-FKEVEYEVMRDAADHAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDREHQMLRNSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+  RG     F  DP S + + +E+N  P ++  S     +   G     +   
Sbjct: 269 LKMIRALDIRGGCNVQFALDPDSFQYYVIEVN--PRVSRSS--ALASKATGVPIARISAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/292 (10%), Positives = 86/292 (29%), Gaps = 30/292 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
              A+  AG +   I+                         V  ++   +P        G
Sbjct: 578 AIQAIRAAGMEAVIINNNPETVSTDFNISDRLYFEPLYTEDVLNIIEKERPLGVVVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         + +  T    +  A    K            P   ++      + +
Sbjct: 638 QTSLNLARDLKEHGVPLLGTDLEAIDRAEDRKKFERLLGEVGIPQPPGTAVTSGEAALSA 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++  +  +   + ++   N    +LI++Y+ G E+   
Sbjct: 698 ARELGFPVLVRPSYVLGGRAMEIVYSESELKNYMDEAVKLNPSHPVLIDRYLQGREIEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +  +  + +  +     +A+  
Sbjct: 758 AISDGDRVLIPGIMEHIERAG---VHSGDSIAVYPPPSLTAEQKQRLVNMTTELARALQI 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           RG+    F+      +++ LE+N +   T     P ++   G         +
Sbjct: 815 RGLINIQFVL--HDEEIYVLEVNPRSSRT----VPFLSKVTGIPMARAATRI 860


>gi|15805695|ref|NP_294391.1| carbamoyl phosphate synthase large subunit [Deinococcus radiodurans
           R1]
 gi|22095540|sp|Q9RWK0|CARB_DEIRA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|6458373|gb|AAF10248.1|AE001924_1 carbamoyl-phosphate synthase, large subunit [Deinococcus
           radiodurans R1]
          Length = 1024

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 94/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGTQALKALKNEGYRVILVNSNPATIMTDPELADATYLEPLTPEFVEKIIEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  ++      LE   +    +G+ A     D+   +  +   GV       
Sbjct: 89  TLGGQTALNLAMELHERGSLEKYGVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++ Q  I  P VI+P       G  +    +            +    +L+E+
Sbjct: 149 VHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLRDSPVTSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +         ++  +   + 
Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDQS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAIIREIGVATGGSNIQFAVNPDNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|296454536|ref|YP_003661679.1| carbamoyl-phosphate synthase large subunit [Bifidobacterium longum
           subsp. longum JDM301]
 gi|296183967|gb|ADH00849.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium longum
           subsp. longum JDM301]
          Length = 1127

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVDEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHNEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|118602846|ref|YP_904061.1| carbamoyl-phosphate synthase large subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
 gi|118567785|gb|ABL02590.1| carbamoyl-phosphate synthase large subunit [Candidatus Ruthia
           magnifica str. Cm (Calyptogena magnifica)]
          Length = 1069

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG    +AL + G++V  I         D              R++  ++   KPD    
Sbjct: 29  SGAQACTALREEGYRVILINSNPATIMTDPKMADATYIEPIEWRTIEKIIEKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+   ++ +   G+ +  +  
Sbjct: 89  TMGGQTALNCALDLERHGVLEKHGVEMIGAKKEAIDKAEDRDLFREAMLKIGLDMPKAAV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +  ++LLIE+
Sbjct: 149 AHNIEQAHTVQKTVGFPTIIRPSFTMGGSGGGIAYNKEEFVEICERGLDLSPTNELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SILGWKEFEMEVVRDSKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEYQVMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVDTGGSNVQFALNPKNGRLTIIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 93/291 (31%), Gaps = 35/291 (12%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +           D+             V  ++    PD    ++H    
Sbjct: 587 ALREDGFETIMVNCNPETVSTDYDISDRLYFEPLTLEDVLTIVDIENPDGI--IVHYGGQ 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQ 121
               +   LE        +   A  L+ D+ R  +++    +      +        D  
Sbjct: 645 TPLKLADALEKNGANIIGTTPDAIDLAEDRERFSKMLQELELKQPLNGTARSLEQAQDIA 704

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
             I  P +++P        + ++    S+   +  +   ++   +L++ ++D  IE+   
Sbjct: 705 DAIGFPLIVRPSYVLGGRAMEIVYDKDSLEHYMYTAVQVSNNSPVLLDSFLDHAIEVDID 764

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +           ++  + P  +  D+  E++       + +  
Sbjct: 765 AICDGEDVVIGGIMQHIEQAGIHSG---DSACSLPPYSLASDVLDEMRIQVIAMAKKLNV 821

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+  +   +     +++ +E+N +   T     P ++   G     +   
Sbjct: 822 IGLMNTQLAY--QDGEIYIIEVNPRASRT----VPFVSKAIGVPLARIAAR 866


>gi|1857220|gb|AAB49636.1| vancomycin resistance protein [Enterococcus faecalis]
          Length = 261

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 62/263 (23%), Positives = 104/263 (39%), Gaps = 43/263 (16%)

Query: 29  AGFKVSQIDVDRSVGLVLAHL----------------------------------KPDLA 54
             F    I + +     L                                     + D+A
Sbjct: 1   EKFDPHYIGITKRGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVA 60

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
           F VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V    +++
Sbjct: 61  FPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMID 120

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G
Sbjct: 121 KGDKPETGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILIEQAISG 178

Query: 175 IELTCGVMGDASLDVTEIAVP-------KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            E+ C VMG+    +                    E +  S N+   +PA IP+     V
Sbjct: 179 CEVGCAVMGNEDDLIVGEVDQIRLSHGIFRIHQENEPEKGSENAMITVPADIPVGERNRV 238

Query: 228 QRLAFLAHQAIGCRGISRSDFLF 250
           Q  A   ++A+GCRG++R D   
Sbjct: 239 QETAKKVYRALGCRGLARVDLFL 261


>gi|197123994|ref|YP_002135945.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp. K]
 gi|196173843|gb|ACG74816.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           K]
          Length = 1067

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYVEPLDVETLTRIIEKERPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +   + +L+   +      + A     D+   K+ ++  G+    S +
Sbjct: 89  NLGGQTGLNLSSELARKGVLDQYGVRVIGVNLDAIRRGEDRETFKETMTRLGIETARSEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G       + +     +    +   Q+L+E+
Sbjct: 149 ATTLEQAMAAGQRLGFPLVVRPAYTMGGTGGGFAYNVEELEEIAARGLLASPVSQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E    +         +I V   +       ++  +        I  ++   +Q  
Sbjct: 209 SVLGWE-ELELEVVRDAKGRKITVCFIENVDAMGVHTGDSYCTAPMLTISPELQARLQDQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+    AI   G +   F  DP + +V  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPRTGRVIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 SML 325



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 36/272 (13%), Positives = 82/272 (30%), Gaps = 18/272 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    +PD       G    +   Q     + I  T    + 
Sbjct: 607 DRLYFEPVTV---EDVLSIYRKERPDGVMVQFGGQTPLNIARQLEEAGVRILGTSPETID 663

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P           +     +  P +++P       G+ V+  
Sbjct: 664 LAEDRERFSAVVRKLGIPQPESGLARDQDEALALARRMGYPLIVRPSYVLGGRGMEVVHD 723

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++   +    L +++++           DA  D T+  VP    +      
Sbjct: 724 EEMLREYVRKAVDVSPERPLYVDRFLVD---AVETEADAICDGTDAFVPAVMEHIELAGV 780

Query: 207 SSLNS-THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263
            S +S   + P  +  +    ++         +G  G+    +        V+ LE N  
Sbjct: 781 HSGDSACVIPPVNVAPEHLATIEDYTRRLALELGVVGLINVQYAI--AGGTVYVLEANPR 838

Query: 264 ---VQPGMTPVSIFPEMAAYA----GYSFREL 288
                P ++ V   P     A    G   ++L
Sbjct: 839 ASRTVPLVSKVCDLPMARIAAQVMLGMRLKDL 870


>gi|332686643|ref|YP_004456417.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius
           ATCC 35311]
 gi|332370652|dbj|BAK21608.1| carbamoyl-phosphate synthase large chain [Melissococcus plutonius
           ATCC 35311]
          Length = 1061

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQAAGYEAIIMNNNPETVSTDFSISDKLYFEPLTLEDVLNVIELEKPTGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A   D       +     P   + +     +    
Sbjct: 639 AINLAAALDQQGIKILGTTVKDLDRAEDRDMFEQALKILEIPQPPGNTAISEAEAISIAG 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++    +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 KIGYPVLLRPSYVLGGRAMEIVENQADLEDYMKYAVKASQEHPVLVDRYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + ++         + C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQILSKKIKQTIETYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+       V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 816 IMNIQFVIHHDD--VYVIEVNPRASRT----VPFLSKITGIKMAQLATRVI 860



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDREIADKVYIEPITLEFVSQILRKEQPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAIELASSGILDELKIELLGTKLSAIDQAEDRDLFKQLMEKLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   ++ +    +     +   Q LIE+ 
Sbjct: 150 HTVEEAVSFTNKIGYPVIVRPAFTLGGTGGGMCDNEEELRAITVNGLKLSPATQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSSDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDQEYQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP     + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPSIFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|254458203|ref|ZP_05071629.1| pyruvate carboxylase [Campylobacterales bacterium GD 1]
 gi|207085039|gb|EDZ62325.1| pyruvate carboxylase [Campylobacterales bacterium GD 1]
          Length = 359

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/286 (15%), Positives = 92/286 (32%), Gaps = 40/286 (13%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
             +    ID+ +           D      +G   E        E  E+ +         
Sbjct: 62  LKYD-KIIDIAK-------KTNCDAIHPG-YGFLSESAEFAQACEDNELIFIGPKPKHIE 112

Query: 89  LSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L  DKM SK  +   GVPV       I   +        I  P +IK   GG   G+ ++
Sbjct: 113 LFGDKMASKVAMKKIGVPVLEGTDTPITNMQEGEKIAQEIGYPVIIKAAFGGGGRGMRIV 172

Query: 145 KKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
                               +  GD  + +   +   +   V+ D+  +V  +       
Sbjct: 173 HFADEFSNMFDSATNESIKYFGKGDVFIEKYVQNPRHIEIQVVADSHGNVVHLGERDCSI 232

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                +             +  ++ +++ +++  A + +G   +   +FL D     V++
Sbjct: 233 Q----RRHQKVIEITPSPLLNDEVRQKLCKISVDAMKELGYESVGTVEFLVDEKDN-VYF 287

Query: 260 LEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +E+N       P +T +         +G    +++  M+E A+  +
Sbjct: 288 IEMNTRVQVEHP-VTEI--------VSGV---DIIQRMIEIAAGDK 321


>gi|154685968|ref|YP_001421129.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154351819|gb|ABS73898.1| PyrAB [Bacillus amyloliquefaciens FZB42]
          Length = 1071

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTEMADRVYIEPLTPEFLTRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +E+  T    +  A   D  R+     +  VP    I
Sbjct: 90  LGGQTGLNLAVELSELGVLEECGVEVLGTKLSAIQQAEDRDLFRTLMNELNEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +   +    I  P +++P       G  +   +  +   +      +   Q L+E+ 
Sbjct: 150 RTLQEAEEFVGRIGFPVIVRPAYTLGGTGGGICSDEAELKEIVENGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDSRDHAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKLIRALGIEGGCNVQLALDPDSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 96/290 (33%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  ++   +P+       G   
Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHIIDLEQPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK        +   P+  + +     +     
Sbjct: 640 INLAEELSARGVKILGTSLEDLDRAEDRDKFEQALEALNVPQPLGKTAVSVNEAVKIAAS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYHEEELLHYMKNAVKINPQHPVLIDRYLTGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  DI K++++      + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSLSEDIKKKIEQYTVALAKGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ LE+N +   T     P ++         L   ++
Sbjct: 817 LNIQFVLSQ--GEVYVLEVNPRSSRT----VPFLSKITKIPMANLATKVI 860


>gi|126701215|ref|YP_001090112.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           630]
 gi|255094544|ref|ZP_05324022.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CIP 107932]
 gi|260685109|ref|YP_003216394.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CD196]
 gi|260688767|ref|YP_003219901.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           R20291]
 gi|306521869|ref|ZP_07408216.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-32g58]
 gi|115252652|emb|CAJ70495.1| Carbamoyl-phosphate synthase large chain 1 [Clostridium difficile]
 gi|260211272|emb|CBA66826.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile CD196]
 gi|260214784|emb|CBE07504.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile R20291]
          Length = 1068

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L   G +   +         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|56478162|ref|YP_159751.1| carbamoyl phosphate synthase large subunit [Aromatoleum aromaticum
           EbN1]
 gi|56314205|emb|CAI08850.1| Carbamoyl-phosphate synthase large chain [Aromatoleum aromaticum
           EbN1]
          Length = 1075

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPETADVTYIEPITWQVVESIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+++ K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLARNGVLEKYGVELIGASRDAIDKAEDRLKFKDAMTKIGLGSARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQGGIGFPVIIRPSFTLGGTGGGIAYNMEEFDEICKRGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPSQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    +  +    ++H            G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDILEIVHVEKPVGVIVQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 642 LKRAQALEDNGVPIIGTSPDMIDAAEDRERFQKLLNDLGLKQPPNRTARTPEAAVRLAAE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D  E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQKDLERYMREAVKVSNESPVLLDRFLNDATEVDVDAL 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGRQVIIGGIMEHIEQAG---VHSGDSACSLPPYTLSAKLQDELRRQTEAMARALNVCG 818

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNVQFAIQGDGDEATVYVLEVNPRASRT----VPFVSKACGLQLAKIAAR 865


>gi|83859440|ref|ZP_00952961.1| carbamoyl-phosphate synthase large subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83852887|gb|EAP90740.1| carbamoyl-phosphate synthase large subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 1086

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              V  V+   +PD    
Sbjct: 29  SGVQAVKALKEEGYRVILVNSNPATIMTDPDLADATYVEPITPEMVAKVIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+L  +    +       + ++ R +  + S G+    S  
Sbjct: 89  TMGGQTALNCALELDKRGVLDLFNVEMIGAKADVIDKAENRERFRNAMDSIGLESPKSRT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 VHTMAEAEVVLEELGLPAVIRPSFTMGGTGGGIAYNVEEFREIVTSGLYNSPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRSAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 38.3 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 58/171 (33%), Gaps = 8/171 (4%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P V++P       G+ +++  +S    + ++   +    LL+++Y
Sbjct: 706 HDEAEARQMAEELGFPLVLRPSHVLGGRGMEIVRDIESFSRYIREAVHVSGKAPLLLDRY 765

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +        V      +   I+            +S  ++  + P  +      E++R  
Sbjct: 766 LS-DASEVDVDAVCDGENVWISGIMEHIEE-AGVHSGDSACSLPPHSLSDQTVSELRRQT 823

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
               +AI  +G+    +        V+ +E+N +   T     P +A   G
Sbjct: 824 KALAKAIDVKGLMNVQYAV--KDGVVYLIEVNPRASRT----VPFVAKTIG 868


>gi|284048652|ref|YP_003398991.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus
           fermentans DSM 20731]
 gi|283952873|gb|ADB47676.1| carbamoyl-phosphate synthase, large subunit [Acidaminococcus
           fermentans DSM 20731]
          Length = 1068

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 91/288 (31%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+D G++   +         D D              V  V+   KP+       G   
Sbjct: 580 ALKDLGYETIIVNNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREKPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  +    +  A   ++            P   ++      + + + 
Sbjct: 640 INLAGPLHECGVKILGSSVDSIDRAEDRERFDELLTSVGIPRPKGHTVFDIDGALKAAND 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ +   +  +   +    +L++ Y+ G E+    + 
Sbjct: 700 VGYPVMVRPSYVLGGRAMEIVYNDEELKYYMNNAVKASQEHPVLVDHYLMGTEVEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   + +++          +   G+
Sbjct: 760 DGKDVLMPGIMEHIERAG---VHSGDSIAVYPPRTLSEHVIEQIIDYTTKLALGLEVHGM 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               ++      K++ +E+N +   T     P ++   G S  ++   
Sbjct: 817 INIQYIV--RDDKLYVIEVNPRSSRT----VPFLSKVTGISMVDVATK 858



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLDVEFLEAIIAKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    + I +   + D+   +         +P    
Sbjct: 89  TLGGQIGLNLAIELDKKGILKKYNVQLLGTQIASIMKAEDRELFKETMEKLHQPIPQSTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    +  P +++P       G  +      +     +   ++   Q LIE+
Sbjct: 149 VESVDAAKEFAQKVGFPLIVRPAYTLGGTGGGIAHNMDQLDDITTKGLMYSLIGQALIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D         +     +                 ++   ++  
Sbjct: 209 SVAGWKEIEYEVVRDHEDNCITVCNMENIDPVGVHTGDSIVVAPCQTLTDREVQM-LRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           A    + +G  G     +  +P S +   +E+N  P ++  S     +   GY 
Sbjct: 268 AIDIVRELGVEGACNVQYALNPDSEEYIVIEVN--PRVSRSS--ALASKATGYP 317


>gi|229544083|ref|ZP_04433142.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
 gi|229325222|gb|EEN90898.1| carbamoyl-phosphate synthase, large subunit [Bacillus coagulans
           36D1]
          Length = 1067

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 84/297 (28%), Gaps = 32/297 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+  G++   ++ +                       +  ++   +    F 
Sbjct: 577 SVHAVM-ALKQLGYETIVVNNNPETVSTDFSMADKLYFDPLRPEDLLHIIEKEQVAGVFT 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +       E +++  T+   +      +                 +      
Sbjct: 636 QFGGQTAINVASSLEAEGVKLFGTNVEQIDQLEDRNLFYKLLDELGIPHIKGHTAYDAEE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGI 175
                  +S P +++P        + +   +  +         +      L+I+QY+ G 
Sbjct: 696 LKRGAKDLSFPVLVRPSYVIGGQSMFIFYHEDELNAYADALKYASEKSWPLMIDQYLPGT 755

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E     + D    +        +       +S  +     P  +   + + + R A    
Sbjct: 756 ECELDCICDGEKVLIPGIFEHIEKAG---VHSGDSMAVYPPQHLSPSVQETLIRYAEKIC 812

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +GI+   FL       V+ LE+N +   T     P ++   G    +L + +
Sbjct: 813 LKGKIKGIANIQFLI--YEGTVYVLEVNPRASRT----VPILSKVTGIPMIDLAIAI 863



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 98/300 (32%), Gaps = 32/300 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      S+  +L   +PD     
Sbjct: 30  GTQSCLALKEEGIEVVLVNSNPATIMTDEEMADRIYFDPLTVESIEQILQKERPDGIIGT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111
           L G  G +  VQ      L+   +    + + +     D+ + +Q++      +P    +
Sbjct: 90  LGGQTGLNLTVQLYEAGILDKYGVQLLGTPVDSIQKGEDREKFRQLMLDIGEPIPPSKIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +I+P       G      D+ +   L +    +   Q+L+E+ 
Sbjct: 150 ENMEDGLAFAKKIGYPVIIRPAYTLGGSGGGFAANDEELREVLQRGLDLSPIHQVLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IKGW-KEIEYEVVRDANDTCIIVCNMENIDPVGVHTGDSIVVAPSQTLSDVQYQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S +   +E+N  P ++  S     +   GY    +   
Sbjct: 269 LKVIRALGVIGGCNIQFALDPHSDQYNIIEVN--PRVSRSS--ALASKATGYPIARIATK 324


>gi|315080677|gb|EFT52653.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL078PA1]
          Length = 1068

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  EL   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAELATRII 866



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|309782464|ref|ZP_07677188.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp.
           5_7_47FAA]
 gi|308918801|gb|EFP64474.1| carbamoyl-phosphate synthase, large subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 1081

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHSLGLRQPPNRTARAEDEALKLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGVPLAKVAAR 875


>gi|314927795|gb|EFS91626.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL044PA1]
 gi|328907259|gb|EGG27025.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium sp.
           P08]
          Length = 1068

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + L+EQ
Sbjct: 149 VHTIDEAVKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRALGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +   +    
Sbjct: 639 AINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP S +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866


>gi|189501741|ref|YP_001957458.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497182|gb|ACE05729.1| hypothetical protein Aasi_0291 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 475

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/141 (19%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNSTHVLPAKI 219
           + +L+E ++ G E +C V+ +A  +   +   +       + Y  KY         P  +
Sbjct: 306 ESVLVESFITGREFSCIVLQEAGNEPVALPPTEMLKGDLHFDYRAKYLPGLVRKQTPMTL 365

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           PL     ++       +++  +  +R D +F      ++  + N   GM P S     AA
Sbjct: 366 PLAQLNTIKEACVQLFESLNFQVYARIDGIFS-SDNSIYLNDPNTTAGMNPSSFLFHQAA 424

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G +  +LL +++ ++   R
Sbjct: 425 EIGLNPSQLLTFLIRNSLAAR 445



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 69/224 (30%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + + +GG S ERE+S + G+     L+   F+   I VD     +               
Sbjct: 7   VGIFLGGSSREREISFAGGRTVYDNLDKGLFEPIPIFVDSFNNFIQLDWRYLYQGSIRDF 66

Query: 46  ------------------LAHLKPD-----------------------LAFNVLHGNFGE 64
                             L +L PD                        AF  LHG  GE
Sbjct: 67  YPPSDMLSLTKFQIYMESLGNLSPDQLSQYMARVGKKVTAEQLKGMIDFAFLSLHGPCGE 126

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS---- 120
           DG +Q +LE  +IPY+ SGIL +A+ +DK+  K+ +   G  V P  +++R T       
Sbjct: 127 DGSIQGLLEWYKIPYSGSGILGTAVGIDKIVQKKWMQQAGFLVTPYSIIDRNTWQKTTNK 186

Query: 121 -------QHLISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLL 155
                   H +  P VIK  + GSS+G+ +   K  ++    + 
Sbjct: 187 DALFEELIHTLGLPLVIKSPRQGSSIGVNIVYEKDFEAFTKAIH 230


>gi|110637336|ref|YP_677543.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
 gi|110280017|gb|ABG58203.1| D-alanine--D-alanine ligase A [Cytophaga hutchinsonii ATCC 33406]
          Length = 897

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 1/104 (0%)

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
           +DF+ Y  KY    S  + P  IP +  + ++      +  +     +R D    P   +
Sbjct: 342 NDFFDYRSKYLPGMSRKITPIDIPGEQVELIRSECCRLYSTLQFNVYARIDGFISPE-GE 400

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           VF  + N   GM P S F   AA  G +  + L +++  +   R
Sbjct: 401 VFLNDPNTTSGMMPSSFFFHQAAEIGLNPSQFLTYIIRTSIQER 444



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/218 (22%), Positives = 78/218 (35%), Gaps = 69/218 (31%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + ++ GG S ERE+S + G+     L    F    I VD                     
Sbjct: 3   IGIIFGGQSREREISFAGGRTVYDNLNKDIFTTVPIFVDSLGQFILLDWQYIYKGTIRDF 62

Query: 40  ------------------RSVGLVLAHLK-------------------PDLAFNVLHGNF 62
                              S+G +    +                    D AF  LHG +
Sbjct: 63  YPPFEFLPKSIHGFQVYVESLGDLPKEERDAMIQKVGRKIEPSDLKELIDFAFLALHGPY 122

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---- 118
           GEDG +Q +L+   IPY+ SGIL SA+ ++K   K++V+         +   + T     
Sbjct: 123 GEDGAIQGMLDWNNIPYSGSGILPSAIGINKYIQKKLVAQASFNGPNYVTYKKSTWLKGA 182

Query: 119 -------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                    +  +  P+V+K    GSS+GI VI +   
Sbjct: 183 DTKALLAHFESSVGFPFVVKAPSQGSSIGITVISERNE 220



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 54/333 (16%), Positives = 103/333 (30%), Gaps = 67/333 (20%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S+SS +  ++A++         D        L+ L  D  F  LHG  GEDG +Q  LE 
Sbjct: 564 SISS-RYVSNAIK---------DPKEISYKELSEL-VDGVFIALHGRPGEDGSMQKELEK 612

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL---------IS 125
            ++PY  SGI +S ++++K  + +++   G+ V    +V +                   
Sbjct: 613 YQLPYNGSGIQSSQITINKFETNRILREHGISVANHRMVYKQEWLDAGEKLLSEIESGFI 672

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P + KP         +   K++       +        Q  +   V G           
Sbjct: 673 YPIIAKPSDD-GCSSAVKKIKNRDELRAYTRLMFGEEAIQGSVSSSVLG-LKYNEEFPQK 730

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV------------------ 227
              + E  V K +   +      L +       +  +I++                    
Sbjct: 731 DYFLIEDLVSKGNAKHFLEVTGGLMTRFNDKGNVEYEIFEPSESLATGDVLSLEEKFLAG 790

Query: 228 ------------------------QRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWL 260
                                   +       + +  +G +R D           +   +
Sbjct: 791 EGQNITPARYTTNKADYEQVASEVRATLKRVAEVLNIQGYARIDAFVRVFENNRSETIII 850

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           E+N  PGMTP +      A  GY   + +  ++
Sbjct: 851 EVNSLPGMTPATCIFHQTAINGYKPYDFIDNIL 883



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 14/45 (31%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA-GFKVSQIDVDRSVGL 44
           +AV+MGG SSER +S+ SG+     L  +  ++   + +  S   
Sbjct: 478 IAVVMGGYSSERHISVESGRNIFEKLSSSTKYQPLPVFLTGSDEQ 522


>gi|315282839|ref|ZP_07871158.1| carbamoyl-phosphate synthase, large subunit [Listeria marthii FSL
           S4-120]
 gi|313613509|gb|EFR87334.1| carbamoyl-phosphate synthase, large subunit [Listeria marthii FSL
           S4-120]
          Length = 1070

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPDSDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILEIPQPAGKTATSVDEAIKVATA 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|307730496|ref|YP_003907720.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp.
           CCGE1003]
 gi|307585031|gb|ADN58429.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1003]
          Length = 1084

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      Q              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARTEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|237811773|ref|YP_002896224.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei MSHR346]
 gi|237506191|gb|ACQ98509.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 1084

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAGEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|212639629|ref|YP_002316149.1| carbamoyl phosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
 gi|212561109|gb|ACJ34164.1| Carbamoylphosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
          Length = 1074

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  V+   +PD     
Sbjct: 41  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVSRVIRKERPDAILPT 100

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    +
Sbjct: 101 LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAIV 160

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +        I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 161 HSLQEAYAFVSQIGYPVIVRPAFTLGGTGGGICTNEEELADIVSSGLKMSPVHQCLLEKS 220

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 221 IAG-YKEIEYEVMRDSKDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 279

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 280 LRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 335

Query: 292 M 292
           +
Sbjct: 336 I 336



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  V+   +P        G   
Sbjct: 589 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEQPIGVIVQFGGQTA 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    L  A + DK            P   +       +     
Sbjct: 649 INLAAELAARGVRILGTSLEDLDRAENRDKFERTLAQLGIPQPRGKTAFSVEEAVHIAKD 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 709 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAIS 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +  D+ +++        + +   G+
Sbjct: 769 DGEDVFIPGIMEHIERAG---VHSGDSIAVYPPQTLTKDMKQQIVDYTIALAKGLRIVGL 825

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+       V+ LE+N       P ++ ++  P  
Sbjct: 826 LNIQFVL--YDGDVYVLEVNPRSSRTVPFLSKITNVPMA 862


>gi|53718990|ref|YP_107976.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei K96243]
 gi|53725563|ref|YP_102535.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei
           ATCC 23344]
 gi|67639732|ref|ZP_00438569.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           GB8 horse 4]
 gi|76812013|ref|YP_333014.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 1710b]
 gi|121600186|ref|YP_992618.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei
           SAVP1]
 gi|124385677|ref|YP_001026580.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei
           NCTC 10229]
 gi|126449005|ref|YP_001080135.1| carbamoyl phosphate synthase large subunit [Burkholderia mallei
           NCTC 10247]
 gi|126454406|ref|YP_001065780.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 1106a]
 gi|167002794|ref|ZP_02268584.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           PRL-20]
 gi|167719060|ref|ZP_02402296.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei DM98]
 gi|167738058|ref|ZP_02410832.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 14]
 gi|167815242|ref|ZP_02446922.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 91]
 gi|167823651|ref|ZP_02455122.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 9]
 gi|167845195|ref|ZP_02470703.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei B7210]
 gi|167893746|ref|ZP_02481148.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 7894]
 gi|167910438|ref|ZP_02497529.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 112]
 gi|217423377|ref|ZP_03454878.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 576]
 gi|226196139|ref|ZP_03791724.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|242314456|ref|ZP_04813472.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1106b]
 gi|254178681|ref|ZP_04885336.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           ATCC 10399]
 gi|254188374|ref|ZP_04894885.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254197959|ref|ZP_04904381.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei S13]
 gi|254199446|ref|ZP_04905812.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           FMH]
 gi|254205759|ref|ZP_04912111.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           JHU]
 gi|254259221|ref|ZP_04950275.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1710a]
 gi|254298041|ref|ZP_04965494.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 406e]
 gi|254358840|ref|ZP_04975113.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           2002721280]
 gi|52209404|emb|CAH35349.1| carbamoyl-phosphate synthase large chain [Burkholderia pseudomallei
           K96243]
 gi|52428986|gb|AAU49579.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           ATCC 23344]
 gi|76581466|gb|ABA50941.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1710b]
 gi|121228996|gb|ABM51514.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           SAVP1]
 gi|124293697|gb|ABN02966.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           NCTC 10229]
 gi|126228048|gb|ABN91588.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1106a]
 gi|126241875|gb|ABO04968.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           NCTC 10247]
 gi|147749042|gb|EDK56116.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           FMH]
 gi|147753202|gb|EDK60267.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           JHU]
 gi|148027967|gb|EDK85988.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           2002721280]
 gi|157807717|gb|EDO84887.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 406e]
 gi|157936053|gb|EDO91723.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei Pasteur 52237]
 gi|160699720|gb|EDP89690.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           ATCC 10399]
 gi|169654700|gb|EDS87393.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei S13]
 gi|217393235|gb|EEC33256.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 576]
 gi|225931725|gb|EEH27727.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|238520331|gb|EEP83792.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           GB8 horse 4]
 gi|242137695|gb|EES24097.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1106b]
 gi|243061555|gb|EES43741.1| carbamoyl-phosphate synthase, large subunit [Burkholderia mallei
           PRL-20]
 gi|254217910|gb|EET07294.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1710a]
          Length = 1084

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|296158200|ref|ZP_06841032.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           Ch1-1]
 gi|295891536|gb|EFG71322.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           Ch1-1]
          Length = 1084

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      Q              P VI+P       G  +            +    +  
Sbjct: 149 AHSMEEALQVQAEIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNRDEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMARA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|312865223|ref|ZP_07725451.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei
           F0415]
 gi|311099334|gb|EFQ57550.1| carbamoyl-phosphate synthase, large subunit [Streptococcus downei
           F0415]
          Length = 1059

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL+ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KALQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       + S  
Sbjct: 639 AINLADPLSKAGVKILGTQVADLDRAEDRDLFEQALQDLDIPQPPGHTATNEEEAVASAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 QIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYLVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQEIIDTITDYTKRLAIGLNCYG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--HDDKVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALREEGYEVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESQIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D    I  P +++P       G  +    + +          +   Q LIE+ 
Sbjct: 150 NTVQEALDFAAEIGYPVIVRPAFTLGGTGGGMCANKEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|291532667|emb|CBL05780.1| carbamoyl-phosphate synthase large subunit [Megamonas hypermegale
           ART12/1]
          Length = 1073

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 103/301 (34%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+               +  +LA  +PD     
Sbjct: 20  GTQACRALKEEGLEVVLVNSNPATIMTDKDIADRVYIEPLTVEFLDEILAKERPDGLLAT 79

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V+      LE   +    + + A   + D+   +         +P    +
Sbjct: 80  LGGQAGLNLAVKLSEAGLLEKYNVELLGTSLEAIERAEDRELFKETMQKLGEPIPESTIV 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ +   +++   ++   Q+LIE+ 
Sbjct: 140 DDVASAVDFANQIGYPIIVRPAYTLGGTGGGIAENEEELIEIVIRGLKYSMIGQVLIERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 200 VAGW-KEVEYEVMRDSNDNCIVVCNMENLDPVGVHTGDSIVVAPSQTLTDHEYQMLRSAS 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + F  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 259 LRIIRELGIEGGCNAQFALDTKSNQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 314

Query: 292 M 292
           +
Sbjct: 315 I 315



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 85/288 (29%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I           D+             V  ++   +P+       G   
Sbjct: 572 ALRKMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKEQPEGVIVQFGGQTA 631

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         +++  T    +  A   ++       ++   P   S+      + +   
Sbjct: 632 INLAASLKAAGVKVFGTSVDDIDRAEDRERFDEVLEQTNIARPQGASVTNVEDAVKAAEK 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +LI+ Y+ G E+    + 
Sbjct: 692 IGYPSMVRPSYVLGGRAMEIVYNEDELRDYMNRAVKVTPDHPVLIDHYMQGTEVEVDAIA 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +   +   +          +  +G+
Sbjct: 752 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSSKVIFTIIDYTKRLGLNLNVKGL 808

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               ++    +  V  +E+N +   T     P ++     +  EL   
Sbjct: 809 LNIQYVVVNDNVYV--IEVNPRSSRT----VPFLSKVTDINMVELATR 850


>gi|226227374|ref|YP_002761480.1| carbamoyl-phosphate synthase large chain [Gemmatimonas aurantiaca
           T-27]
 gi|259585681|sp|C1A4I5|CARB_GEMAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226090565|dbj|BAH39010.1| carbamoyl-phosphate synthase large chain [Gemmatimonas aurantiaca
           T-27]
          Length = 1094

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 77/275 (28%), Gaps = 27/275 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQAIKALREEGYEVILVNSNPATIMTDPEFADRTYVEPVTPEFVEKVIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L         +   A  ++ D+    + +   G+       
Sbjct: 89  TMGGQTALNVALALHDSGVLAKYGCELIGANARAIRVAEDRKLFGEAMEKIGLRCPTGRT 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      + +      P +I+P       G  +    +     + +    +    +LIE+
Sbjct: 149 VTSLEEALSAVEETGFPAIIRPSFTLGGTGGGIAYNREEFETIVRRGLDLSPVHSVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYELEVMRDCADNVVIVCSIENLDPMGVHTGDSITVAPAMTLTDREYQVMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +     G     F  +P + ++  +E+N +
Sbjct: 269 VAIIREIGVDAGGCNIQFAVNPTNGELIVIEMNPR 303



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 93/295 (31%), Gaps = 32/295 (10%)

Query: 20  KACASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
           +A   AL + G++   +           D+             V  ++   +P+     L
Sbjct: 584 RAVL-ALREQGYETIMVNSNPETVSTDFDISDKLYFEPLSLEDVLEIVHREQPEGVIVQL 642

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T    + +A    +  +         P   +       +
Sbjct: 643 GGQTPLKLTRPLEAAGVKILGTSPDAIDAAEDRRRFEAIARELGIEQPANGTATSVDEAV 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P +++P        + ++  + S+     +++  +    +L++++  D  E 
Sbjct: 703 TIAQRIGFPVLVRPSYVLGGRAMEIVHDEVSLRDYFERAARVSEERPVLVDRFLEDAFEA 762

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D +  V    +   +           ++  + P  IP     +++       + 
Sbjct: 763 DVDALSDGTDVVIGAVMEHIESAGIHSG---DSACILPPYLIPAAAVAQMKEHTIAFAKR 819

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G  G+    + +     +V+ +E+N +   T     P ++   G S   +   +
Sbjct: 820 LGVVGLINVQYAY--KDGQVYVIEVNPRASRTA----PFVSKAIGVSLPSVAARL 868


>gi|254428280|ref|ZP_05041987.1| urea carboxylase [Alcanivorax sp. DG881]
 gi|196194449|gb|EDX89408.1| urea carboxylase [Alcanivorax sp. DG881]
          Length = 1196

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 58/184 (31%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +   S+          +  +      +++       
Sbjct: 147 ADTIGYPIMLKSTAGGGGIGMQVCENAASLDKAWDTVRRLSANNFSNDGVFIEKYIARAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +             +          PA    D +  ++   A    +A+ 
Sbjct: 207 HIEVQVFGDGQGNAITLGERDCSAQRRHQKVLEETPAPNLPDAVRADLHATAKNLMEAVH 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+ D  S   ++LE+N +     G+T            G    +L+ WM++ 
Sbjct: 267 YRNAGTVEFILDQDSNAFYFLEVNTRLQVEHGVTE--------QVYGV---DLVEWMLQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGN 319


>gi|121534313|ref|ZP_01666137.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121307083|gb|EAX48001.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 1073

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 48/290 (16%), Positives = 90/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D              V  V+   +PD       G   
Sbjct: 580 ALREMGVETVIINNNPETVSTDFDTADRLYFEPLTVEDVLHVVEKEQPDGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      + I  T    +  A    K  +         P   S+       +   +
Sbjct: 640 INLAVPLARAGVPILGTSVESIDCAEDRKKFDALVERLGIPRPAGVSVTNMAEAREKAGV 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   L ++   +    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMQIVYNENELVEYLTKAVQASTDRPVLIDRYIQGTEVEVDAIA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+    D    +         A+  RG
Sbjct: 760 DGQDVLI----PGIMEHIERAGVHSGDSIAVYPARTLGPDEITRIVDYTKRLALALNVRG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      +V+ LE N +   T     P ++   G    +L   +
Sbjct: 816 LINIQFVV--ADGQVYILEANPRSSRT----VPFLSKVTGIPMVQLATRI 859



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++A  +PD     
Sbjct: 30  GTQACRALKEEGLEVVLVNSNPATIMTDDNIADRVYIEPLTPDFIEEIIAKERPDGLLPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           L G  G +          L        G   +A+   + R     +   +          
Sbjct: 90  LGGQVGLNLAVTAAERGVLERYGVKLLGTPLAAIKKAEDRELFRATMQQIGQPVPESTIA 149

Query: 116 FTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            T+         I  P +++P       G  ++  D  +   + +    +   Q+L+E+ 
Sbjct: 150 STLAQALRFAKDIGYPLIVRPAYTLGGTGGGIVHNDAELGEVVARGLKHSLIGQVLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +  + Y+ ++  A
Sbjct: 210 LAGW-KEIEYEVMRDGADNCIVVCNMENLDPVGIHTGDSIVVAPSQTLSDEEYQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LAIIRALGIEGGCNVQFALDPHSSRYYVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|86158154|ref|YP_464939.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
 gi|85774665|gb|ABC81502.1| carbamoyl-phosphate synthase large subunit [Anaeromyxobacter
           dehalogenans 2CP-C]
          Length = 1077

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +  L+LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEVVLLNSNPATIMTDPGFADRTYVEPITPETAELILAREKPDVLLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G    +          L    +    + + A   + D+   +         +P    
Sbjct: 89  TLGGQTALNLAVALARNGALARHGVELIGASLEAIEKAEDRLLFKEAMERVGVELPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIARDIGFPIIIRPSFTMGGEGGGVAYNLEEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +  +  
Sbjct: 209 SIIGWKEYELEVMRDRKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMREAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LRIIREIGVETGGSNIQFGVHPQTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.026,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 31/285 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL  AGF+   +         D D S  L    L  +    ++H            G   
Sbjct: 589 ALSKAGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHVEKPKGLIVQYGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++  +         P                 
Sbjct: 649 LKLAVPLHALGVPIFGTAPDAIDRAEDRERFAALIEKLGLRQPRNGVARSADEAFAVARR 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + V+  D+ +   L ++   ++   +LI+++  D  E+   V+
Sbjct: 709 IGYPAMVRPSYVLGGRAMEVVYDDRDLETYLREAVQASNERPVLIDRFLKDAAEVDVDVV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           ++  + P  +  +   E++R +    + +G  G
Sbjct: 769 SDGRDVTVGGVMEHIEEAGIHSG---DSACALPPYSLRPEHVAEIERQSVAMARELGVIG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    F        ++ LE+N +   T     P +    G    +
Sbjct: 826 LMNVQFAI--QGDDIYVLEVNPRASRT----VPFVGKATGLPLAK 864


>gi|17231301|ref|NP_487849.1| carbamoyl phosphate synthase large subunit [Nostoc sp. PCC 7120]
 gi|22095512|sp|Q8YQL2|CARB_ANASP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|17132943|dbj|BAB75508.1| carbamoyl phosphate synthetase large chain [Nostoc sp. PCC 7120]
          Length = 1104

 Score = 63.7 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+    + +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +               P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLDESKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327


>gi|325922458|ref|ZP_08184225.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri
           ATCC 19865]
 gi|325547078|gb|EGD18165.1| carbamoyl-phosphate synthase large subunit [Xanthomonas gardneri
           ATCC 19865]
          Length = 1080

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTNGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       +   +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGLMEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F           VF LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVDEAGDDVVFLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873


>gi|320546979|ref|ZP_08041280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus
           ATCC 9812]
 gi|320448381|gb|EFW89123.1| carbamoyl-phosphate synthase, large subunit [Streptococcus equinus
           ATCC 9812]
          Length = 1059

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D         +   P   +       +++ H
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKALNIPQPPGQTATNEEEAVEAAH 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKVQETIADYTKRLAIGLNCFG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G+ V  ++                         V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D+ +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDQFKQLMEDLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFADSIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|313682967|ref|YP_004060705.1| carbamoyl-phosphate synthase large subunit [Sulfuricurvum kujiense
           DSM 16994]
 gi|313155827|gb|ADR34505.1| carbamoyl-phosphate synthase large subunit [Sulfuricurvum kujiense
           DSM 16994]
          Length = 1082

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 88/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+ + +                     +  ++   K D    
Sbjct: 29  SGTQAVKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPIKPEIIAEIIKKEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE +E    +   +         +   V     +P+     
Sbjct: 89  TMGGQTALNAAMKMHELGMLEGIEFLGANPSAIKKGEDRQAFKECMVKIGMDLPISRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +I+     +  G  V        L   +    +   ++LIE+ +
Sbjct: 149 NMDEAMAAAEAIGFPIIIRASYTLAGGGSGVAYNIDEFKLLAQRGLDESPITEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSVNPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 96/291 (32%), Gaps = 35/291 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63
           AL++ G +   +         D D S  L            ++   +PD    ++H    
Sbjct: 582 ALKEMGIETIMVNCNPETVSTDYDTSDVLYFEPIDFEHVRSIVEAEQPDGI--IVHFGGQ 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQ 121
               +   L  +      +      L+ ++ +    V   G+    +   +      +  
Sbjct: 640 TPLKLANGLHAIGAKIAGTSAEVIDLAENREKFSAFVIEQGLKQPENGLSMTKEGAFEIA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
             +  P +++P        + ++  +  +   +  + S ++   +L+++++D  +EL   
Sbjct: 700 EKLGYPVLVRPSYVLGGRAMRIVYNEDELRTYMDVAVSVSNDSPVLVDKFLDQAVELDVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D         +   +           ++  + P  +  +I  +V++        +G 
Sbjct: 760 AISDGKEVYIGSVMQHIEEAGIHSG---DSACSLPPVSLSAEIQAQVEQQTKKIALGLGV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    +       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 817 IGLLNIQYAI--YQNEVYLIEVNPRASRT----VPFVSKATGMPLAKVATR 861


>gi|315640850|ref|ZP_07895949.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus
           DSM 15952]
 gi|315483389|gb|EFU73886.1| carbamoyl-phosphate synthase, large subunit [Enterococcus italicus
           DSM 15952]
          Length = 1049

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR +                +L    PD     
Sbjct: 20  GTQACLALKEEGYEVVLVNSNPATIMTDREIADRVYIEPITYEFVSRILRKEMPDAILPT 79

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    I
Sbjct: 80  LGGQTGLNMAMELSKAGILDELKIELLGTKLSAIDQAEDRDLFKKLMEELAQPIPESDII 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 140 TTVEQAVVFAKKIGYPVIVRPAFTLGGTGGGMCANEEELRQIAENGLKLSPVTQCLIERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 200 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 259 LTIIRALKIEGGCNVQLALDPESFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 314

Query: 292 M 292
           +
Sbjct: 315 I 315



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 569 KAIQAAGYEAVIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPLGVIVQFGGQT 628

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   ++I  T    L  A + D             P   +       +    
Sbjct: 629 AINLAEPLVKAGVKILGTTIEDLDRAENRDLFEQALKELEIPQPEGDTATNKEDAVAIAK 688

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L+++Y+ G E     +
Sbjct: 689 RIGFPVLVRPSYVLGGRAMEIVENETDLRDYMEHAVKASPEHPVLVDRYLVGKECEVDAI 748

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  +     P  +     + +          + C G
Sbjct: 749 CDGKIVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSEKTKQTIIDYTKKLALGLNCIG 805

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G    ++    +
Sbjct: 806 MMNIQFVI--HDETVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 850


>gi|313675823|ref|YP_004053819.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa
           DSM 4126]
 gi|312942521|gb|ADR21711.1| carbamoyl-phosphate synthase, large subunit [Marivirga tractuosa
           DSM 4126]
          Length = 937

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG   + +L + G +V+ I+                       +S+  +L     D    
Sbjct: 29  SGSQASRSLREEGIEVTLINSNPATIMTDEVTADNIYLKPLTKKSIIEILEKHDIDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++       +  ++      + A   + ++   +  +   GV VC    
Sbjct: 89  TMGGQTALNLAIECDKAGVWDKYKVKMLGVDVDAIDTTENRELFRLKMKELGVGVCEGET 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              F    +    I  P VI+       LG  ++K        L      +   ++LIEQ
Sbjct: 149 ATSFLQGKEIAQRIGFPLVIRSSFTLGGLGGSIVKDPAEFDNALKDGLHSSPIHEVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   ++    +     +F    +      +             +     
Sbjct: 209 SILGWKEYELEILRDNIGNVIVICSVENFDPMGVHTGDSITVAPAQTLPDTVYQEMRNLA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P +  +  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IKMIKGIGNFAGGCNVQFAVNPENDDIIGIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.098,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 93/307 (30%), Gaps = 40/307 (13%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39
            +++G      G   E + S        +A ++ G++   I         D D       
Sbjct: 558 VIILGSGPNRIGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYF 614

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  +  ++ H KP      L G        +     + I  T    L  A      
Sbjct: 615 EPVFWEHIYDIILHEKPVGVIVQLGGQTALKLAEKLNRYGINIIGTSFDALDLAEDRGSF 674

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +    P    +      ++    I  P +++P       G+ ++  ++ +   +
Sbjct: 675 SKLLADNDIPYPKFTVVEDADNALEMAKDIGFPMLVRPSYVLGGQGMKIVINERELEEHV 734

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +       G+++L++ ++DG IE     + D         +   +           +   
Sbjct: 735 VDVLRDIPGNKVLLDHFLDGAIEAEADAICDGEDVYIIGVMQHVEPAGIHSG---DSYAV 791

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P  +   +  +++        A+  +G+    F     +  V+ +E N +   T    
Sbjct: 792 LPPYNLGDFVLTQIETYTKKIALALETKGLINIQFAI--KNDIVYIIEANPRASRT---- 845

Query: 274 FPEMAAY 280
            P +   
Sbjct: 846 VPFICKA 852


>gi|303327367|ref|ZP_07357808.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           3_1_syn3]
 gi|302862307|gb|EFL85240.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio sp.
           3_1_syn3]
          Length = 1080

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      ++  ++   +PD    
Sbjct: 29  SGSQAVKALKEEGYEVVLVNSNPATIMTDPQMADATYVEPIEQDTLAAIIRKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +L    +    +       +  +   ++ + + G+ +  S  
Sbjct: 89  TLGGQTALNAALGLAKSGVLSECGVELIGARAEVIEKAESRELFREAMENIGLKMPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      +++  P +++P       G  V    + +     +  S +   +++IEQ
Sbjct: 149 ARNLDDVRRLGNVLPFPLIVRPAFTLGGTGGGVAYNLEDLEEVAARGLSASPTSEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +   +     ++  K     
Sbjct: 209 SVLGWKEIEMEVMRDQKDNCVIICSIENFDPMGVHTGDSITVAPVQTLSDMEYQKIRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFGVDPANGDIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 84/263 (31%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVMNIVEKEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   + +     ++    I+ P V++P        + V+  
Sbjct: 675 RAEDRERFQALIQKLGLLQPPNGTAMDLEEALEVAERITYPVVVRPSYVLGGRAMAVVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +     +         +LI+++++       V  DA  D  E+ V     +  E   
Sbjct: 735 AAELADYFREQVPEKPEHPILIDKFLE---HAVEVDVDALSDGREVYVAGIMEHIEEAGI 791

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP+     D    +   A    + +   G+    F        ++ LE+N +
Sbjct: 792 HSGDSACVLPSFSLSYDHVALIAAQAEALARELRVVGLMNIQFAI--KGDDIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G     L
Sbjct: 850 ASRTA----PFVSKATGVPLPYL 868


>gi|260889104|ref|ZP_05900367.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii
           F0254]
 gi|260861164|gb|EEX75664.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia hofstadii
           F0254]
          Length = 1074

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  ++ +                       V  ++   +PD     
Sbjct: 43  GTQACLSLREEGYKVILVNSNPATIMTDKEIADKVYIEPLTVEFVSKIIRKERPDALLPT 102

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         +LE   +    + + +   + D+   R         VP    I
Sbjct: 103 LGGQVGLNLAVELHKAGVLEECGVELLGTKLDSIKQAEDRELFRDLMNELGEPVPESDII 162

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 163 HNLEEARRFVEKIGYPVIVRPAFTMGGTGGGICHNDEELEDIVTNGLRYSPVTQCLLEKS 222

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 223 ISG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREYHMLRDVS 281

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 282 LKIIRALKIEGGCNVQLALDPYSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 337

Query: 292 M 292
           +
Sbjct: 338 I 338



 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/287 (11%), Positives = 95/287 (33%), Gaps = 32/287 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++++G++   ++ +                       V  ++   +P+       G  
Sbjct: 592 KAIKESGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMAIIELEQPEGVVVQFGGQT 651

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +   +     ++I  T    + +A + DK  +     +   P+  +       + +  
Sbjct: 652 AINLAEKLARHGVKILGTALEEIDNAENRDKFEALLHKLNIPQPLGKTAFDTETAVKNAA 711

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++ +++ +   +  +   +    +L ++Y+ G E+    +
Sbjct: 712 EIGYPVLVRPSYVLGGRAMEIVYREEELRQYMENAVKVSPDHPVLTDRYLVGKEIEVDAI 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +     P  I     + +        + +   G
Sbjct: 772 CDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQSITDSQKRTLIDYTTRLAKGLNIIG 828

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AAYAGY 283
           +    ++      +V+ LE+N       P ++ ++  P    A  G 
Sbjct: 829 LLNIQYVI--SDGEVYVLEVNPRSSRTVPFLSKITGVPMANLAMKGI 873


>gi|255308623|ref|ZP_05352794.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           ATCC 43255]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L   G +   +         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMGIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFRDIDAAEDREKFDDLLERLDINRPKGKGVWTTNEGVEI 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMGHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|114562154|ref|YP_749667.1| carbamoyl phosphate synthase large subunit [Shewanella
           frigidimarina NCIMB 400]
 gi|114333447|gb|ABI70829.1| carbamoyl-phosphate synthase large subunit [Shewanella
           frigidimarina NCIMB 400]
          Length = 1073

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++A   L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALQLEAQGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKSIGLDCPRAGI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              MD  +    ++  P +I+P       G  +    +       Q    +  ++LLI++
Sbjct: 149 AHNMDEAYGVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +      +   P   ++      +     
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLNMKQPENATVTTVESAVIEAEK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++   ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVKVSNASPVLLDHFLDDAIEVDIDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +  DI   ++         +G  G
Sbjct: 767 CDGETVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSADIQARMRDQVSKLAFELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|313623243|gb|EFR93491.1| carbamoyl-phosphate synthase, large subunit [Listeria innocua FSL
           J1-023]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.6 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|293596891|ref|ZP_05265354.2| carbamoyl-phosphate synthase [Listeria monocytogenes HPB2262]
 gi|293583546|gb|EFF95578.1| carbamoyl-phosphate synthase [Listeria monocytogenes HPB2262]
          Length = 411

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 38  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 97

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 98  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 157

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 158 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 217

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 218 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 276

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 277 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 332

Query: 292 M 292
           +
Sbjct: 333 I 333


>gi|258592883|emb|CBE69192.1| carbamoyl phosphate synthase, large subunit [NC10 bacterium 'Dutch
           sediment']
          Length = 1099

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPEIADRTYVEPLTVSVVEQIIARERPDALLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+       +  A   D  +         VP    
Sbjct: 89  TLGGQTGLNLAVALAEEGILDRYGVEMIGAKLQAIKKAEDRDLFKQAMQKIGVEVPESGH 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +         I  P +I+P       G  +          +    S +   Q+LIE 
Sbjct: 149 AYSHEEARSIVERIGYPAIIRPSFTLGGAGGSIAYNRDEFDEQVQWGLSMSPVHQVLIEA 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVIGWKEFELEVMRDLKDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDKEYQLMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREIGVETGGSNIQFAVNPRNGQMLAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 86/263 (32%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    +PD       G       +      ++I  T    + 
Sbjct: 635 DRLYFEPLCL---EDVLNIAERERPDGVIVQFGGQTPLKLAIPLERAGVKILGTPPDAID 691

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   + +     +     I  P +++P        + ++  
Sbjct: 692 RAEDRERFKQVLQRLDLNQPPNGTAVSVSEALRIARQIGYPVLVRPSYVLGGRAMEIVYN 751

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           + S+   + ++   +    +L++++  D IE+    + D    V    +   +       
Sbjct: 752 ESSLQEYMARAVQASLDHPVLVDKFLEDAIEMDVDALCDGREVVIGGIMEHIEAAG---V 808

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P  +  +++         +G  G+    F        V+ LE+N +
Sbjct: 809 HSGDSACSLPPRSVPQSLLDQIRAQTKAMALELGVIGLINIQFAI--KDGIVYVLEVNPR 866

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G    +L
Sbjct: 867 ASRT----VPFVSKAVGVPLAKL 885


>gi|255521077|ref|ZP_05388314.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           FSL J1-175]
          Length = 990

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGKNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|290893036|ref|ZP_06556025.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J2-071]
 gi|290557396|gb|EFD90921.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J2-071]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.9 bits (99), Expect = 0.064,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLAEGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|229019089|ref|ZP_04175924.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273]
 gi|229025333|ref|ZP_04181751.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272]
 gi|228735918|gb|EEL86495.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1272]
 gi|228742189|gb|EEL92354.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1273]
          Length = 1018

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229174552|ref|ZP_04302083.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3]
 gi|228608921|gb|EEK66212.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus MM3]
          Length = 1018

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229192056|ref|ZP_04319025.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           10876]
 gi|228591382|gb|EEK49232.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           10876]
          Length = 1018

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|226224438|ref|YP_002758545.1| carbamoyl-phosphate synthetase (catalytic subunit) [Listeria
           monocytogenes Clip81459]
 gi|259585682|sp|C1KWD4|CARB_LISMC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225876900|emb|CAS05609.1| Putative carbamoyl-phosphate synthetase (catalytic subunit)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALGILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|254826123|ref|ZP_05231124.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J1-194]
 gi|293595363|gb|EFG03124.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL J1-194]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGKNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|217964012|ref|YP_002349690.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           HCC23]
 gi|254813599|sp|B8DDR7|CARB_LISMH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|217333282|gb|ACK39076.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           HCC23]
 gi|307571417|emb|CAR84596.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           L99]
 gi|313608127|gb|EFR84184.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           FSL F2-208]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|46908067|ref|YP_014456.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|254852741|ref|ZP_05242089.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL R2-503]
 gi|300763852|ref|ZP_07073849.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           FSL N1-017]
 gi|67460315|sp|Q71YI1|CARB_LISMF RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|46881337|gb|AAT04633.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|258606065|gb|EEW18673.1| carbamoyl-phosphate synthase [Listeria monocytogenes FSL R2-503]
 gi|300515588|gb|EFK42638.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           FSL N1-017]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|16801015|ref|NP_471283.1| carbamoyl phosphate synthase large subunit [Listeria innocua
           Clip11262]
 gi|22095516|sp|Q92AH3|CARB_LISIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|16414450|emb|CAC97179.1| pyrAB [Listeria innocua Clip11262]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.2 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEAAIKVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSEQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|47093072|ref|ZP_00230850.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           str. 4b H7858]
 gi|47018573|gb|EAL09328.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           str. 4b H7858]
 gi|328466185|gb|EGF37342.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           1816]
 gi|328473557|gb|EGF44394.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           220]
 gi|332312276|gb|EGJ25371.1| Carbamoyl-phosphate synthase [Listeria monocytogenes str. Scott A]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       ++    
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAINVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSSQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|167752764|ref|ZP_02424891.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216]
 gi|167659833|gb|EDS03963.1| hypothetical protein ALIPUT_01025 [Alistipes putredinis DSM 17216]
          Length = 1060

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 85/289 (29%), Gaps = 29/289 (10%)

Query: 26  LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           +  AG++   I+ +                       V  V+   KP      L G    
Sbjct: 578 IRAAGYEAIIINNNPETVSTDYTTSDKLYFEPLTVEDVMNVITLEKPKGIVVSLGGQTAI 637

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + I  T    + +A                 P   ++      + +   I
Sbjct: 638 NLAEPLHELGVPIIGTGVEAIRNAEDRGCFEKIMEELGIPQPEAEAVTDIEAGVRAAERI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++  ++ +   L  +   N    +L+++Y+ G EL    + D
Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNEDSPVLVDRYIMGRELEVDAICD 757

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +           + +      +      ++        + IG  G+ 
Sbjct: 758 GKDVFIPGIMEHVEKTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVRLGRRIGIVGLY 814

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+ D     V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 815 NIQFILDGEED-VYVIEVNPRSSRT----VPFLSKATGVPMADIATRVI 858



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++ + +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIQTDVQIADKVYMEPLTLEYVAKIVRYERPDAIVPG 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ           +EI  T    +  A   +  +         V      
Sbjct: 90  LGGQTGLNLAVQLAKKGVLQECQVEILGTSFQSIEQAEDRELFKELCQSLGEPVLPSLIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +++   I  P V++P       G      +  +   +  + S +   Q+LIE+ 
Sbjct: 150 NNIDEAVEAAKRIGYPVVLRPAFTLGGTGGGFADDETQLREMMRNALSLSPVHQVLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T IA+   +       ++  +        +    Y+ ++  A
Sbjct: 210 IKG-YKEIEYEVIRDHNDTAIAICNMENIDPVGVHTGDSIVVAPSQTLTNKEYQLLRDSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DPLS   + +E+N  P ++  S     +  +GY    +   
Sbjct: 269 LRLIRALKIEGGCNVQFALDPLSFNYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|154484782|ref|ZP_02027230.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC
           27560]
 gi|149734630|gb|EDM50547.1| hypothetical protein EUBVEN_02500 [Eubacterium ventriosum ATCC
           27560]
          Length = 1065

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/317 (13%), Positives = 98/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+               +  ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLVNSNPATIMTDKDIADKVYIEPLTVPVLEKIIEKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      LE  E     +       + D++  K+ +   G P  PS  +
Sbjct: 90  LGGQAGLNLAMEIAETDFLEKHECRLIGTTSETIKKAEDRLEFKETMEKIGEPCAPSLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +      +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGIAFTNKIGYPVVLRPAYTLGGSGGGIAHNQVELVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    ++ ++  A
Sbjct: 210 IAGW-KEVEYEVMRDSAGNCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEHQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIINELNITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAITKK 341



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFKEEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVENIVNIEKPDGAVVQFGGQ-- 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    +++  C +P      +       +  
Sbjct: 639 TAIKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEKCSIPRPTGGTVFTAEEAKEVA 698

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    
Sbjct: 699 NRLGYPVLVRPSYVLGGQGMQIATCDEEVEEFMEIINRIAQDHPILVDKYLQGTEVEVDA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240
           + D +  +     P    +       S +S  V PA     +I   ++       +++  
Sbjct: 759 ICDGTDILI----PGVMEHIERAGVHSGDSISVYPAYSLSKEIIDTIEDYTEKLARSLHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+    F+      KV+ +E+N +   T     P ++   G    +L    +
Sbjct: 815 KGMINIQFIVC--DGKVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKCI 861


>gi|228940975|ref|ZP_04103533.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar berliner ATCC 10792]
 gi|228973906|ref|ZP_04134481.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228980495|ref|ZP_04140805.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           Bt407]
 gi|228779315|gb|EEM27572.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           Bt407]
 gi|228785772|gb|EEM33776.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar thuringiensis str. T01001]
 gi|228818654|gb|EEM64721.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar berliner ATCC 10792]
          Length = 1018

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   +PD     L G  G + +   + +   +      IL + LS  +    + 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 100 VS-------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +        +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|312963094|ref|ZP_07777579.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens WH6]
 gi|311282605|gb|EFQ61201.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens WH6]
          Length = 1073

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLETLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAASK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +++ +   L  +   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEEELKRYLRDAVKVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +PL I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPLHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|229180162|ref|ZP_04307506.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W]
 gi|228603371|gb|EEK60848.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 172560W]
          Length = 1018

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             RS     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRSLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|257075650|ref|ZP_05570011.1| carbamoyl phosphate synthase large subunit [Ferroplasma acidarmanus
           fer1]
          Length = 1051

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 35/303 (11%)

Query: 18  SGKACASALEDAGFKVS----------------------QIDVDRSVGLVLAHLKPDLAF 55
           SG     AL++ G K                         +D   SV  ++   K D   
Sbjct: 27  SGSQACLALKEEGIKTVLLNSNPATIQTDREIADRVYIEPVDP-ESVLAIIKKEKIDSIL 85

Query: 56  NVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCP 109
               G  G +         IL    I    + + +  ++ D+    +        V    
Sbjct: 86  PSTGGQVGLNLVILLERLGILSSYNIKVLGTPVTSIEIAEDRKKFFNLMKKIGEPVIESY 145

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++  N +      +   P +++        G ++IK  + +  D        H D + ++
Sbjct: 146 TLTKNDYRDLMPGIKKYPLILRTGFSLGGSGGVIIKNVKEL-SDYCDDYFSVHDDMVELD 204

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G             +   I++   +       ++  +        +  D Y++++ 
Sbjct: 205 ESLLG-LKEIEYEMMRDNNGNCISICNMENLDPMGVHTGESIVTTPSLTLSNDSYQKLRT 263

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      IG  G     F  D    + + +E+N +   T  S     +  +GY    + 
Sbjct: 264 SAIHVVNEIGVIGSCNIQFALDQEKDEYYIVEVNPR---TSRSS-ALASKASGYPIARVS 319

Query: 290 LWM 292
             +
Sbjct: 320 TKI 322


>gi|75908114|ref|YP_322410.1| carbamoyl phosphate synthase large subunit [Anabaena variabilis
           ATCC 29413]
 gi|75701839|gb|ABA21515.1| carbamoyl-phosphate synthase large subunit [Anabaena variabilis
           ATCC 29413]
          Length = 1097

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIARERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+    + +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLDQYNVELIGAKLPAIEKAEDRKLFNEAMDKIGVKVCPSGT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +               P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 ASSLDEAKAIARRIGTYPLIIRPAFTMGGTGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 25/175 (14%), Positives = 60/175 (34%), Gaps = 8/175 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D  +   +  +        +LI+++++   +   
Sbjct: 722 AKRIGYPVVVRPSYVLGGRAMEIVYSDAELERYMTFAVQVEPEHPILIDKFLEN-AIEVD 780

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A      +     +       +S  ++  +    +P  +  +++       QA+  
Sbjct: 781 VDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPSISLPPAVLNQIRSWTVQLAQALSV 840

Query: 241 RGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    F        S +V+ LE N +   T     P ++   G S  +L   +
Sbjct: 841 VGLMNIQFAVVGASSYSPQVYILEANPRASRT----VPFVSKATGISLAKLASLI 891


>gi|315103457|gb|EFT75433.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA2]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L    PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRREHPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + L+EQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|315091957|gb|EFT63933.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA4]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + L+EQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSRAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|314966795|gb|EFT10894.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL082PA2]
 gi|314981133|gb|EFT25227.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA3]
 gi|315093286|gb|EFT65262.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL060PA1]
 gi|327327622|gb|EGE69398.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL103PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + L+EQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|314923021|gb|EFS86852.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL001PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + L+EQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|282854052|ref|ZP_06263389.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J139]
 gi|282583505|gb|EFB88885.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J139]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLAKGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVADDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELATSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + L+EQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVSECLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIARVLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|325288980|ref|YP_004265161.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271]
 gi|324964381|gb|ADY55160.1| urea carboxylase [Syntrophobotulus glycolicus DSM 8271]
          Length = 1214

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ + +  +S+              +      L        
Sbjct: 147 AGQIGYPVMLKSTAGGGGIGMRICQNAESLCAAYESVKYLAKTNFKDDGIFLESYIARAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + G  S ++  +            K         LP  I  +    +   A    
Sbjct: 207 HIEVQIFGSRSGEIIAVGERDCSVQRRNQKVLEETPAPGLPQHIRKE----MHEAAVRLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           ++ G +     +FL+D  +++ ++LE+N +     G+T            G    +L+ W
Sbjct: 263 KSAGYQNAGTVEFLYDTQAQQFYFLEVNTRLQVEHGVTE--------ELYGI---DLVEW 311

Query: 292 MVEDAS 297
           M+ +A+
Sbjct: 312 MIREAA 317


>gi|294084785|ref|YP_003551543.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664358|gb|ADE39459.1| D-alanine--D-alanine ligase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 375

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 64/287 (22%), Positives = 112/287 (39%), Gaps = 14/287 (4%)

Query: 19  GKACASALEDAGFKVSQIDVDR-SVGLVLAHLKPDLAFN-VLHGNFGEDGLV-QAILELL 75
            K   S L     KVS  ++        LA  KPDL F+ V +  F E+ +     LEL 
Sbjct: 83  AKLIHSILSKKYSKVSITEISTLECLTKLAKRKPDLVFSGVKYFEFEENQIWLNDFLELN 142

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPL 133
            I Y  S   A      K  +K +V   G+     +++N   +  D+   I  P  +KP+
Sbjct: 143 HIRYIGSNHAALDREHHKGFAKSIVKQAGILTADYVIINTNKVSVDNNMNIPYPVFVKPV 202

Query: 134 KGGSSLGIIVIKKDQSIPL--DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL---- 187
           +GG S+GI  +            +           L+E Y+ G E + G++ D       
Sbjct: 203 RGGDSIGIDDLSLVFDRKQLDAKVDQICNVLNCDALVESYLTGREFSVGILEDERTNLLT 262

Query: 188 -DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISR 245
               EI  PK++     L +           K+    ++K++  +   A +A+G R   R
Sbjct: 263 AMPIEIIAPKNERGHRVLDHEIKRLDQETVRKVKNKTLHKKLSEVGKSAFKALGGRSFGR 322

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            D           ++E N+ PG++    +   A     ++ +++L +
Sbjct: 323 IDIRLCAK-GLPHFVEANLMPGLSKGYFYRSCALNLNMTYDDMILLL 368


>gi|241663321|ref|YP_002981681.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii
           12D]
 gi|240865348|gb|ACS63009.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii
           12D]
          Length = 1081

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP +   V +G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKP-VGLIVQYGGQT 650

Query: 64  E-DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                +      + I  T   ++ +A   ++ +          P   +       +    
Sbjct: 651 PLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAE 710

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     
Sbjct: 711 EIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDC 770

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D         +   +       +S  ++  + P  +      E++R      +A+   
Sbjct: 771 LSDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVI 827

Query: 242 GISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G+    F       +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 828 GLMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGVPLAKVAAR 875


>gi|167582310|ref|ZP_02375184.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis TXDOH]
          Length = 1084

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLDKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQQDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|300023326|ref|YP_003755937.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299525147|gb|ADJ23616.1| carbamoyl-phosphate synthase, large subunit [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 1091

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++A  KPD    
Sbjct: 29  SGTQACKALREEGYRIILVNSNPATIMTDPDLADATYIEPITPEVVAKIIAKEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +       Q IL+   +    +   A   + D+   ++ + + G+    S  
Sbjct: 89  TMGGQTALNTALALHQQGILQRHGVELIGANAAAIDKAEDRQLFREAMKTIGLETPRSKL 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   +  P +I+P       G  +    +       +    +   Q+L+E+
Sbjct: 149 AHTREEAADALEHVGLPAIIRPSFTLGGTGGGIAYNREEFFEIAERGLDASPTTQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.2 bits (92), Expect = 0.35,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  DI  E++R A     A+   G+    F       +VF LE+N +   T  
Sbjct: 813 CSLPPHSLSADIITELERQARELALALRVVGLMNIQFAI--KDGEVFILEVNPRASRT-- 868

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G     +   +
Sbjct: 869 --VPFVAKVIGLPIASIASRI 887


>gi|83718685|ref|YP_443293.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis E264]
 gi|167620407|ref|ZP_02389038.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis Bt4]
 gi|257139529|ref|ZP_05587791.1| carbamoyl phosphate synthase large subunit [Burkholderia
           thailandensis E264]
 gi|83652510|gb|ABC36573.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           thailandensis E264]
          Length = 1084

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEAHKVHGEIMAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQQDGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|295130560|ref|YP_003581223.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK137]
 gi|291375949|gb|ADD99803.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK137]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDETELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|297530689|ref|YP_003671964.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
 gi|297253941|gb|ADI27387.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
          Length = 1065

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    L  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++   + +   +  +   N    +L+++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  ++  ++        + +  
Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ LE+N +   T     P ++   G     L    +
Sbjct: 814 VGLLNIQFVVAGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860


>gi|297571589|ref|YP_003697363.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium
           haemolyticum DSM 20595]
 gi|296931936|gb|ADH92744.1| carbamoyl-phosphate synthase, large subunit [Arcanobacterium
           haemolyticum DSM 20595]
          Length = 1063

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 92/293 (31%), Gaps = 29/293 (9%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
               + DAG++   I+ +                       V  ++ H +P      L G
Sbjct: 572 AIKTIRDAGYEAIIINDNPETVSTDYTTADKLYFEPLTVEDVLNIVDHEQPIGVITSLGG 631

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         + +  T    +  A   D+        +       ++      +  
Sbjct: 632 QTAINLAGPLAARGVTLLGTSLEAINRAEDRDEFERLLSTLNIPQAPGKAVTNVEDGIAV 691

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + ++  D+ +   L Q    +    +L+++Y+ G EL   
Sbjct: 692 AAEVGYPVLVRPSFVLGGRAMRIVGSDEQLHHYLSQGLEIDTDRPVLVDKYISGKELEVD 751

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D         +   +       +S  + +      +   +  ++        +AIG 
Sbjct: 752 AICDGQDVFVPGIMELVEHTG---VHSGDSISVYPTFSVSNKVKGDILAYTKALGKAIGI 808

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+ D    KV+ +E+N +   T     P ++   GY    +   ++
Sbjct: 809 VGLFNVQFIVDE-DEKVYIIEVNPRSSRT----VPFLSKVTGYGLPAIATRVI 856



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/295 (13%), Positives = 95/295 (32%), Gaps = 32/295 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYRVILVNSNPATIMTDSDVADRVYMEPLTLEYVAKIIRKERPDAIVPG 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           + G  G +  +Q           +++  T S  +  A   ++ +         V      
Sbjct: 90  IGGQTGLNLAMQLEKKGILAECGVQLLGTPSESIERAEDREQFKQLCESIGEPVIASDIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 + +   I  P V++P       G       + +   ++ +   +   Q+LIE+ 
Sbjct: 150 YTVEEALAAAERIGYPVVLRPAFTLGGTGGGFAHSPEELTEMMVNALHLSPVHQVLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D T       +     +            +    D+   +++ A
Sbjct: 210 IVGYKEIEFEVMRDASDHTICICSMENIDPVGVHTGDSVVVAPALSLNESDLEM-LKQSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           F   +++   G     F  +P + + F +E+N  P ++  S     +  +GY   
Sbjct: 269 FKLIRSLKIEGGCNVQFALNPTTSEYFLIEVN--PRVSRSS--ALASKASGYPIA 319


>gi|225181285|ref|ZP_03734730.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225168065|gb|EEG76871.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1084

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL+D G +V  ++ +                      ++  ++A  +PD     
Sbjct: 30  GTQACRALKDEGLEVVLVNSNPATIMTDTNIADRVYIEPLQIDTLTEIIAKERPDGLLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    + +  T    +  A   D  +    + +  +P    +
Sbjct: 90  LGGQVGLNAGKDLAEQGILERYGVRMLGTPLDAIIRAEDRDHFKQTMEMLNEPIPASTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P V++P       G      ++ +     +    +  +Q+L+EQ 
Sbjct: 150 SSIDDAVSFAAEAGYPVVVRPAYTMGGTGGGFAADEEELRSTAQRGLKASPINQILVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +       ++  +        +    ++ ++  +
Sbjct: 210 VAGWKEVEFEVMRDSNDNCITICSMENIDP-VGVHTGDSIVVAPAQTLTDKEFQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  D  S     +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNIQFALDTDSFNYIVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M--------VEDASCLR 300
           +        +E+A   +
Sbjct: 325 IAIGMTLDEIENAVTQK 341



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 93/289 (32%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+DAG++   +         D D              V  +L   +PD       G   
Sbjct: 586 ALQDAGYETIIVNNNPETVSTDFDTADRLYFEPLQPEDVLNILDKEQPDGVIVQFGGQTA 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   DK            P   ++      + +   
Sbjct: 646 INLAEPLANAGIPIIGTSVENIDRAEDRDKFDLLLTELDIARPPGQTVTSAAEAVPAAQA 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   +  +   +    +L+++Y+ G EL    + 
Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYSDDELLEYMHNAVRVSPRHPVLVDKYLLGTELEVDAIS 765

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + PA+   D +KE+         + +  +G
Sbjct: 766 DGETVLI----PGIMEHIERAGVHSGDSIAMYPAQSIADKHKELIVDYTTRLARGLKVKG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           I    ++    +  ++ +E+N +   T     P ++        +L   
Sbjct: 822 IINIQYVLFEDN--LYVIEVNPRSSRT----VPFLSKVTDIPMVQLATR 864


>gi|218133233|ref|ZP_03462037.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC
           43243]
 gi|217992106|gb|EEC58110.1| hypothetical protein BACPEC_01098 [Bacteroides pectinophilus ATCC
           43243]
          Length = 1066

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  +           D+           +SV  ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTTKSVEQIILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      L+   +    +  L    + D++  K         V     +
Sbjct: 90  LGGQAGLNLAMELDEAGFLKEHNVRLIGTTALTIKKAEDRLMFKETMEKIHEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGVVFAEKIGYPVVLRPAYTLGGSGGGIAHCREELEEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  G++   I         D D              V  V+   KPD A     G   
Sbjct: 581 AFKREGYETIIINNNPETVSTDFDIADKLYFEPLTAEDVENVVRLEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +        +        ++      + + + 
Sbjct: 641 IKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEKTQIPRAKGHTVYTVDEALKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAVSDTDVIEFMNIINRIKQDHPILVDKYLMGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PAK     I   ++       +A+  +G
Sbjct: 761 DGDDILI----PGIMEHIERAGIHSGDSISVYPAKSLSPKIIDMIEDYTGRLARALHVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 817 LINIQFI--DYNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATKVI 861


>gi|187929113|ref|YP_001899600.1| carbamoyl phosphate synthase large subunit [Ralstonia pickettii
           12J]
 gi|187726003|gb|ACD27168.1| carbamoyl-phosphate synthase, large subunit [Ralstonia pickettii
           12J]
          Length = 1081

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSQIAKETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHALGLRQPPNRTARAEDEALKLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGIPLAKVAAR 875


>gi|153810105|ref|ZP_01962773.1| hypothetical protein RUMOBE_00486 [Ruminococcus obeum ATCC 29174]
 gi|149834283|gb|EDM89363.1| hypothetical protein RUMOBE_00486 [Ruminococcus obeum ATCC 29174]
          Length = 118

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 16/38 (42%), Positives = 22/38 (57%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV 38
          + VL GG S+ER+VS+ SG     AL   G +   +DV
Sbjct: 3  IVVLAGGTSTERDVSIVSGTGICGALRQKGHQAILVDV 40


>gi|325294322|ref|YP_004280836.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064770|gb|ADY72777.1| carbamoyl-phosphate synthase, large subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 1071

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         ILE   +    + I A   + D+   K+ +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVELYEAGILEKYGVELIGAKIEAIKKAEDRELFKEAMLKIGLEVPKSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M+    +  P +I+P       G  V    +       +    +  +++LIE+
Sbjct: 149 ARSLDEAMEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKRGLDASPINEILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQVLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREIGVETGGSNVQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++             D D                 ++   KP+       G   
Sbjct: 584 ALRELGYEAHMANCNPETVSTDYDTSDKLFFEPLTLEDALNIVEKEKPEGVIVQFGGQTP 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V    E ++I  T S  +  A   ++ R+         P                 
Sbjct: 644 LKLSVPLEKEGVKILGTSSESIDIAEDRERFRTLLNKLGLKQPPSGIARSLEEAEKIAEE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   + ++   +    +LI+++++          
Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYDINELRTYMTEAVEVSEDRPVLIDKFLED---AVEFDV 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  E    S +S  VLP   +P +I +E++ +       +  +G
Sbjct: 761 DAVCDGKRVVIGGVMEHIEEAGIHSGDSACVLPTFSVPKEIVEEIKEITRKIALELNVKG 820

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 821 LINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKVATK 863


>gi|323526829|ref|YP_004228982.1| carbamoyl-phosphate synthase large subunit [Burkholderia sp.
           CCGE1001]
 gi|323383831|gb|ADX55922.1| carbamoyl-phosphate synthase, large subunit [Burkholderia sp.
           CCGE1001]
          Length = 1084

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      Q              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALQVHARIAAETGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|182624281|ref|ZP_02952066.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens D str. JGS1721]
 gi|177910499|gb|EDT72872.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens D str. JGS1721]
          Length = 1067

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++    PD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      +D    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTAEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFSNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|168205836|ref|ZP_02631841.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens E str. JGS1987]
 gi|170662675|gb|EDT15358.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens E str. JGS1987]
          Length = 1067

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++    PD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      +D    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLDEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIDKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|166240878|ref|ZP_02240750.1| Ddl [Paenibacillus larvae subsp. larvae BRL-230010]
          Length = 241

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 48/203 (23%), Positives = 84/203 (41%), Gaps = 6/203 (2%)

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           Q V               F M  +  I  P  IKP   GSS+GI   +    +   + ++
Sbjct: 32  QCVFRHFTRSQWQKDQPFFLMGLEISIGYPCFIKPANLGSSVGISKARNRDELIKAVEEA 91

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI----AVPKSDFYSYELKYSSLNSTH 213
               +  +++IE++V+  E+   V+G+   +V+      +   SDFY Y+ KY   NS  
Sbjct: 92  F--KYDRKVIIEEFVEAREIEVAVLGNEEPEVSVPGEIISSKNSDFYDYKAKYQDGNSIM 149

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           V+PA IP +   ++Q       + I    +S  DF        +    IN  P  TP   
Sbjct: 150 VIPADIPEETAAQIQEXXIXXFKXIXXSXLSXLDFFMRNSXXHIXINXINTXPXFTPFFK 209

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P +   +   + ++L  +++ A
Sbjct: 210 DPLLXKXSXXPYFKVLDELIDLA 232


>gi|116873270|ref|YP_850051.1| carbamoyl phosphate synthase large subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
 gi|123458554|sp|A0AJU0|CARB_LISW6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116742148|emb|CAK21272.1| carbamoyl-phosphate synthase, large subunit [Listeria welshimeri
           serovar 6b str. SLCC5334]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYSFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 88/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSQQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|320101561|ref|YP_004177152.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC
           43644]
 gi|319748843|gb|ADV60603.1| carbamoyl-phosphate synthase large subunit [Isosphaera pallida ATCC
           43644]
          Length = 1083

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 102/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++                     +  +V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGFRVVLVNSNPATIMTDPEMADRTYIEPVIPEAVADIIAVERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +    Q +LE        +   A   + D+   K+ ++  G+    S L
Sbjct: 89  TLGGQTGLNVALALADQGVLERYGCRMIGANAEAIRKAEDRQLFKKCMAEIGLECARSGL 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P V++P       G  +    +        +   +    +L+E+
Sbjct: 149 ATSLEEARALRDEIGLPCVLRPSFTLGGSGGGIAFNKEEFERIAAHALELSPVHSVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +F      ++  + T      +    Y+ ++  
Sbjct: 209 SVIGWKEYEMEVMRDGADNAVVVCSIENFDPMG-VHTGDSITVAPAQTLSDKEYQTLRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    +AIG   G S   F  DP + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 268 SLAILRAIGVETGGSNVQFAVDPRTGRVLVIEMN--PRVSRSS--ALASKATGFPIAKIA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 99/321 (30%), Gaps = 44/321 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL   G++V  +         D D S 
Sbjct: 565 IVVLGGGPN-------RIGQGIEFDYCCCQAAFALRADGYEVVMVNSNPETVSTDYDTSD 617

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +   N+              G    +         + I  T    +  A  
Sbjct: 618 QLFFEPLTVEDVLNICERVKPIGLVVQFGGQTPLNLARALEAAGVPILGTSPESIDLAED 677

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D+                S +           I  P +++P        + ++  + S+
Sbjct: 678 RDRFSQVLARLGLRQTPNGSAVKVEEAARIAATIGYPVLVRPSFVLGGRAMEIVYDESSL 737

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++   +    +LI+++++   +   V          +     +       +S  +
Sbjct: 738 LKYMNEAVDVSSDRPVLIDKFLE-DAVEVDVDAVRDATGVVVVAGVMEHIEEAGIHSGDS 796

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P  +P +I  E++R   L   A+  +G+    F       +V+ LE N +   T 
Sbjct: 797 ACAIPPHNLPPEIIAEIKRQTRLLADALEVKGLMNLQFAV--KDGQVYVLEANPRASRT- 853

Query: 271 VSIFPEMAAYAGYSFRELLLW 291
               P ++   G +  ++   
Sbjct: 854 ---VPFVSKATGLNLAKVAAR 871


>gi|254516628|ref|ZP_05128687.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR5-3]
 gi|219675051|gb|EED31418.1| carbamoyl-phosphate synthase, large subunit [gamma proteobacterium
           NOR5-3]
          Length = 1072

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D              R+V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWRTVARIIEVEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D   + +LE   +    +   A   + D+    + +   G+       
Sbjct: 89  TMGGQTALNCALDLAREGVLEANGVEMIGATKEAIDKAEDRELFDKAMKRIGLETPRASF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     +  +  P +I+P       G  +    +      L+    +   +LLI++
Sbjct: 149 ARSMEEAHAVREKLGFPCIIRPSFTMGGSGGGIAYNREEFEEICLRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGVCPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 94/271 (34%), Gaps = 18/271 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++A  +P        G              + I  T    + 
Sbjct: 613 DRLYFEPVTL---EDVLEIVAKEQPKGVIVQFGGQTPLKLARALEAAGVPIIGTTPDAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   ++      +++   I  P V++P        + ++ +
Sbjct: 670 RAEDRERFQQLIQELGLLQPANTTVRSVEQAIEAARTIGYPLVVRPSYVLGGRAMEIVYR 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   + ++ S +    +L++ ++   IE+    + D    V    +   +       
Sbjct: 730 EEDLLRYMREAVSVSDESPVLLDSFLSAAIEVDIDAVSDGEQVVIGAIMQHIEQAG---V 786

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263
           +S  ++  + P  +P D+  +++        A+G +G+      +     K++ +E+N  
Sbjct: 787 HSGDSACSLPPYSLPADVQDQMREQVRQMALALGVKGLMNVQLAW--QDEKIYVIEVNPR 844

Query: 264 ---VQPGMTP---VSIFPEMAA-YAGYSFRE 287
                P ++     S+    A   AG S  +
Sbjct: 845 ASRTVPFVSKCIGTSLAKVAARCMAGVSLED 875


>gi|183220671|ref|YP_001838667.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189910774|ref|YP_001962329.1| carbamoyl phosphate synthase large subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167775450|gb|ABZ93751.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Ames)']
 gi|167779093|gb|ABZ97391.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Leptospira biflexa serovar
           Patoc strain 'Patoc 1 (Paris)']
          Length = 1103

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 91/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D              +  ++   KPD    
Sbjct: 29  SGTQATKALREKGIRVILVNSNPATIMTDPDLADATYIEPLTVPVLEKIIKKEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE   +    + + A   + D+   K  +   G+ V  S +
Sbjct: 89  TVGGQTALNLALALHREGVLEKYNVELIGAKVDAIRKAEDRELFKLAMEKLGIRVAKSFM 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    ++  I  P +I+P       G     ++        +  S +   Q+L+E+
Sbjct: 149 VSDMEAARKAKDEIGFPIIIRPAFTLGGTGGGTCYEESEFEEIAQKGLSASPISQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVMGWKEFELEVMRDLNDNVVIICSIENLDPMGVHTGDSITVAPQQTLSDKEYQRLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IDIIREIGVETGGSNIQFAVNPENGDVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/254 (11%), Positives = 76/254 (29%), Gaps = 10/254 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +    +PD     L G              + I  T    +  A    +      
Sbjct: 652 EDVMAIFKKERPDGVIVQLGGQTPLKLAKSLEKRGVPILGTSPDSIDRAEDRKRFAEVLE 711

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   P            +    I  P +++P        ++++ ++  +   + ++  
Sbjct: 712 KLNLKSPENGIASSKDKAREIARKIGYPVLVRPSYVLGGRAMLIVNEETELDKYMEEAEE 771

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    LL++ +  D  E+    + D         +   +           ++  + P  
Sbjct: 772 VSEDRPLLVDSFLQDATEVDVDALCDGKDVFIAGVMEHIEEAGIHSG---DSACVLPPQS 828

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I   + +E++         +  +G+    +        ++ LE+N +   T     P +A
Sbjct: 829 ISQRMIQEIEEATLRLALELDVKGLINVQYAI--KDETLYVLEVNPRASRT----VPFVA 882

Query: 279 AYAGYSFRELLLWM 292
              G    ++ + +
Sbjct: 883 KSIGIPIVKIAVRL 896


>gi|220930279|ref|YP_002507188.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulolyticum H10]
 gi|220000607|gb|ACL77208.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulolyticum H10]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 87/252 (34%), Gaps = 8/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   KP        G    +       E + I  T    +  A    K        
Sbjct: 622 VLDIIEKEKPLGVIVQFGGQTAINLAETLHQEGVNILGTSVHSIDIAEDRYKFLKLLETL 681

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              +P   +    +   +  + I  P +++P        + ++  D+++   +  +S  +
Sbjct: 682 DIPIPEGNTAFSFQHAKEIANKIGYPVLVRPSYVLGGRAMEIVYNDKTLEEYITMASEIS 741

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +LI++YV G E+    + D +  +    +   +       +S  +     P  +  
Sbjct: 742 TEHPILIDKYVVGREMEVDGICDGNEVLIPGIMEHIERAG---VHSGDSIAVYPPRNLSK 798

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++   ++       +A+   G+    F+ D   +KV+ +E+N +   T     P M+   
Sbjct: 799 EVKATIEDYTIRLAKALKVVGLFNIQFVMD-SDQKVYVIEVNPRASRT----VPIMSKIT 853

Query: 282 GYSFRELLLWMV 293
           G     +   ++
Sbjct: 854 GIPMVGVSTKLI 865



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +V  I+ +                       V  ++   KPD    
Sbjct: 29  SGTQACKSLREEGIEVVLINSNPATIMTDTQSADKVYIEPITLEFVKKIIYKEKPDGILA 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  VQ   +       +E+  T    +  A   +  +      +  V     
Sbjct: 89  SLGGQTGLNMAVQLAEDGILDDLNIELLGTSLSSIKKAEDRELFKETMQEINEKVAPSKI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  ++    I  P +I+P       G  +    +       +    +   Q+L+EQ
Sbjct: 149 VTTMQDAIEFAEKIGFPIIIRPAYTLGGSGGGIANNMEEFKYICGKGLKLSMISQVLLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   + +     ++  +        +    Y+ ++  
Sbjct: 209 SVAGW-KEIEYEVMRDSSDNCIIICNMENFDPVGVHTGDSIVVAPSQTLSNVEYQMLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+  +G     F  +P S +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 SIRIIRALDIKGGCNIQFALNPSSFEYVVIEVN--PRVSRSS--ALASKATGYPIARVTA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|315108362|gb|EFT80338.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL030PA2]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|314962836|gb|EFT06936.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL082PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L   L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGIKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|314915483|gb|EFS79314.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA4]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|313812977|gb|EFS50691.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL025PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|313764490|gb|EFS35854.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL013PA1]
 gi|313816029|gb|EFS53743.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL059PA1]
 gi|313827741|gb|EFS65455.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL063PA2]
 gi|314918233|gb|EFS82064.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA1]
 gi|314920046|gb|EFS83877.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL050PA3]
 gi|314932060|gb|EFS95891.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL067PA1]
 gi|314955931|gb|EFT00331.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL027PA1]
 gi|314958136|gb|EFT02239.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA1]
 gi|314967797|gb|EFT11896.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA1]
 gi|315098501|gb|EFT70477.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL059PA2]
 gi|315101142|gb|EFT73118.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL046PA1]
 gi|327450817|gb|EGE97471.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA3]
 gi|327453837|gb|EGF00492.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL083PA2]
 gi|328754237|gb|EGF67853.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA1]
 gi|328754513|gb|EGF68129.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL025PA2]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRRLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|289425379|ref|ZP_06427156.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK187]
 gi|289154357|gb|EFD03045.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes SK187]
 gi|313792178|gb|EFS40279.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA1]
 gi|313801871|gb|EFS43105.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL110PA2]
 gi|313838697|gb|EFS76411.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL086PA1]
 gi|315078052|gb|EFT50103.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL053PA2]
 gi|327330221|gb|EGE71970.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL097PA1]
 gi|327453105|gb|EGE99759.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL092PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + LIEQ
Sbjct: 149 VHTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ ++ ++  
Sbjct: 209 SIAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|218777877|ref|YP_002429195.1| carbamoyl phosphate synthase large subunit [Desulfatibacillum
           alkenivorans AK-01]
 gi|218759261|gb|ACL01727.1| Carbamoyl phosphate synthetase, large subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 1066

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 95/296 (32%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQACKALRQVGYEIVLVNSNPATIMTDPGMADATYIEPLNVESLTRIIEKERPDALLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               ++I       +      D+ ++        +P    
Sbjct: 89  NLGGQSGLNLSSELAQQGVLKKYGVKIIGVQESAIKRGEDRDEFKATMNKLGIEMPKNTV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P V++P       G  ++   + + +   +  S +   Q+LIE+
Sbjct: 149 VTTVEDAQKAAAELGFPVVVRPAYTMGGTGGGMVFNREELDVIASRGLSASRVGQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +       T  +   I  ++   +Q+ 
Sbjct: 209 SVLGWEELELEVVRDAKNQRITVCFIENVDAMGVHTGDSYCTAPM-LTISQELQDRLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++   +AI   G +   F  DP + +V  +EIN +   T  S     +   G+   
Sbjct: 268 SYDIVEAIEVIGGTNVQFAHDPETGRVVVIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 37/267 (13%), Positives = 85/267 (31%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP+       G    +   +     + I  T    + 
Sbjct: 606 DRLYFEPLTL---EDVLSIYEKEKPEGLIVQFGGQTPLNIAGELAKAGVPILGTQPESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+  S     +  +P           +     I  P +++P       G+ V+  
Sbjct: 663 LAEDRDRFASMMAELNIPMPEAGMASNLDDALQVAAKIGYPLMVRPSYVLGGRGMEVVHD 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++        +LI++++           DA  D  ++ VP    +      
Sbjct: 723 EEMLKHYVGKAVGVTPERPILIDKFLP---HAIEAEADALSDGVDVFVPAVMEHIELAGI 779

Query: 207 SSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  V+P       + + ++       +A+   G+    +       +V+ LE N +
Sbjct: 780 HSGDSACVIPPISIPAKHLETIKEYTKKIAKALNVVGLMNIQYAICE--DRVYVLEANPR 837

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++     S   L   +
Sbjct: 838 ASRT----VPIVSKVCNVSMARLATRL 860


>gi|50842483|ref|YP_055710.1| carbamoyl phosphate synthase large subunit [Propionibacterium acnes
           KPA171202]
 gi|81826456|sp|Q6A914|CARB_PROAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|50840085|gb|AAT82752.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes
           KPA171202]
 gi|315105418|gb|EFT77394.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL030PA1]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866



 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +               +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGIPDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|325972387|ref|YP_004248578.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
 gi|324027625|gb|ADY14384.1| D-alanine--D-alanine ligase domain protein [Spirochaeta sp. Buddy]
          Length = 310

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 76/294 (25%), Gaps = 24/294 (8%)

Query: 16  LSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           L   +  A  L + G+  + +    S    L      + FN++     E+ L   +  +L
Sbjct: 23  LRQAQWIAEILTEKGYATTLLPYSLSALEQLEKSV--VVFNLVDSAPKEELLSYLVPGIL 80

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           E  +      + +                    P+  +     +    +  P      + 
Sbjct: 81  ESLHLRYTGCSLSSLFLSTDKVLAKRLLSEHTLPTPALYSKESEKGLYLIKP----TTQD 136

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
            S         +      +L+      G     EQY+DG E T  + G            
Sbjct: 137 ASVGLDEQCLVEHDRVQAVLREKEQEVGCPCFAEQYIDGREFTVCMYGTKEEAHILPPYE 196

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA--------------FLAHQAIGCR 241
                  +                  +                                 
Sbjct: 197 WVFNDYGQNAKIITYDAKWTENTFGYEHITAKYTHDEADKALLQQLVQISTSCWNVFDLH 256

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           G +R DF  D    + + LE+N  P         +      +SF +++L++VE 
Sbjct: 257 GYARVDFRVDDQ-NRPYILELNANPSFYGFYHLAKEWL---FSFEDIVLFLVEH 306


>gi|300868973|ref|ZP_07113577.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC
           6506]
 gi|300333040|emb|CBN58769.1| carbamoyl phosphate synthase large subunit [Oscillatoria sp. PCC
           6506]
          Length = 1101

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     +  ++A  +P     
Sbjct: 29  SGTQACKALREEGFQVVLVNSNPATIMTDPETAERTYIEPLTPEILEKIIAKERPQAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A  ++ D++  K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNLAVAVAKNGVLEKYGVELIGAKLPAIEMAEDRLLFKEAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                            P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ACNLDEARAIGHEIGSFPLIIRPAFTMGGTGGGISYNQEEFEEMAQGGIDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++ +   +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPVNGEFIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 28/260 (10%), Positives = 73/260 (28%), Gaps = 14/260 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL-------ASALSM 91
              V  ++    P+       G       V     L   P   + I         +A   
Sbjct: 644 KEDVLNIIEAEDPEGVIIQFGGQTPLKLAVPLQKALTNHPSVKTKIWGTSPDSIDTAEDR 703

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++        +               +     I  P V++P        + ++  D  + 
Sbjct: 704 ERFEKILRELNIQQAANGMARSFEDALIVAQRIGYPVVVRPSYVLGGRAMEIVYSDVELE 763

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             ++ +        +LI+++++   +   V   A      +     +       +S  ++
Sbjct: 764 RYMMFAVHVEPDHPILIDKFLEN-AIEVDVDAIADTSGNVVIGGIMEHIEEAGIHSGDSA 822

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             +    + L     ++       +A+   G+    F       +V+ +E N +   T  
Sbjct: 823 CSIPTQTLSLAALATIRGWTVELAKALKVIGLMNIQFAV--QGEQVYIIEANPRASRT-- 878

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 879 --VPFVSKAIGVPLAKIASR 896


>gi|313837185|gb|EFS74899.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA2]
 gi|314971957|gb|EFT16055.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL037PA3]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDIADKVYIEPITFEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G  G + +   + +   +      +L + L         D  +         VP    
Sbjct: 90  LGGQTGLN-MATELAKSGILDELGIELLGTKLSAIEKAEDRDLFKQLMDELGQPVPASEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P +++P       G  +   +  +   + +    +   + L+EQ
Sbjct: 149 VHTIDEAVKVGNTIGYPLIVRPAYTLGGTGGGLCHDEAELERIVGKGLELSPVTECLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D T +     +F    +                ++ Y+ ++  
Sbjct: 209 SIAGYKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-YEMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIEIVRALGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/295 (12%), Positives = 95/295 (32%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +   +    
Sbjct: 639 AINLAGPLSAAGVPILGTQLADLDRAEDREGFESLLAELGIPQAPGGTARSSEEALAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSTKELKRYMRDAVHTSPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQQVTDRIVEVTTKLARGLNTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP S +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVIANDPTSGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATQII 866


>gi|167574345|ref|ZP_02367219.1| carbamoyl phosphate synthase large subunit [Burkholderia
           oklahomensis C6786]
          Length = 1088

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G   +A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYGVELIGASPAAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHAEIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 42/305 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLDLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFD-----------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   G+    F              P    ++ LE+N +   T     P ++        
Sbjct: 821 LNVVGLMNVQFAIQQVPADANATDGPKEDIIYVLEVNPRASRT----VPYVSKATSLPLA 876

Query: 287 ELLLW 291
           ++   
Sbjct: 877 KIAAR 881


>gi|167562358|ref|ZP_02355274.1| carbamoyl phosphate synthase large subunit [Burkholderia
           oklahomensis EO147]
          Length = 1088

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G   +A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYGVELIGASPAAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHAEIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPRDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/305 (11%), Positives = 92/305 (30%), Gaps = 42/305 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAEEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFD-----------PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   G+    F              P    ++ LE+N +   T     P ++        
Sbjct: 821 LNVVGLMNVQFAIQQVPADANATDGPKEDIIYVLEVNPRASRT----VPYVSKATSLPLA 876

Query: 287 ELLLW 291
           ++   
Sbjct: 877 KIAAR 881


>gi|70734326|ref|YP_257966.1| carbamoyl phosphate synthase large subunit [Pseudomonas fluorescens
           Pf-5]
 gi|68348625|gb|AAY96231.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 1073

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R    + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDAAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLDKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYEEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +            +++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLAL--QGDQIYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|239826549|ref|YP_002949173.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. WCH70]
 gi|239806842|gb|ACS23907.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. WCH70]
          Length = 1065

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLEFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +         +L    +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELARTGVLAECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +++P       G  + K ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICKNEEELIDIVSTGLKLSPVHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFHYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 92/293 (31%), Gaps = 30/293 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  V+   KP        G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHVIDLEKPIGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    L  A   DK            P   +       +     
Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQTLSELGIPQPQGKTAFSVEEAVRIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ +++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEEELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +  DI +++        + +   G+
Sbjct: 760 DGETVFIPGIMEHIERAG---VHSGDSIAVYPPQTLTKDIQQKIVDYTIKLARGLRIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F+      +V+ LE+N +   T     P ++   G     +   ++  A
Sbjct: 817 LNIQFVM--YQGEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863


>gi|53803859|ref|YP_114289.1| carbamoyl-phosphate synthase, large subunit [Methylococcus
           capsulatus str. Bath]
 gi|53757620|gb|AAU91911.1| carbamoyl-phosphate synthase, large subunit [Methylococcus
           capsulatus str. Bath]
          Length = 1072

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPEMADATYIEPIDWQTVARIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   + +LE   +    +   A A + D+ + ++ +   G+ V  S +
Sbjct: 89  TMGGQTALNCALDLDREGVLERFGVEMIGASREAIAKAEDRDQFRKAMIKIGLSVPKSEV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALSVLDMVGYPAIIRPSFTLGGSGGGIAYNREEFVEICERGLELSPTHELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPRDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + GF+   I         D D S 
Sbjct: 561 IVVLGGGPN-------RIGQGIEFDYCCVHAAMALREDGFETIMINCNPETVSTDFDTSD 613

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    V+H            G              + I  T    +  A  
Sbjct: 614 RLYFEPLTLEDVLEVVHLEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPDSIDLAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +      +   P   +       +     I  P V++P        + ++  D  +
Sbjct: 674 RERFQKLIDRLNLKQPPNRTARSLEEALRGAQEIGYPLVVRPSYVLGGRAMEIVFNDDDL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +L++ S ++   +L++++  D IE+    + D    +    +   +       +S  
Sbjct: 734 KRYMLEAVSVSNESPVLLDRFLSDAIEMDVDAVADGQRVMIGGLMQHIEQAG---VHSGD 790

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  DI   V+    L  +A+G  G+  + F       ++F LE+N +   T
Sbjct: 791 SACSIPPYDLRADIQDRVREQVRLLAEALGVVGLMNTQFAI--QDDEIFVLEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   GY   ++   
Sbjct: 849 ----VPFVSKATGYPLAKVAAR 866


>gi|16803875|ref|NP_465360.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           EGD-e]
 gi|224500066|ref|ZP_03668415.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           Finland 1988]
 gi|224501364|ref|ZP_03669671.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           FSL R2-561]
 gi|254829169|ref|ZP_05233856.1| pyrAB [Listeria monocytogenes FSL N3-165]
 gi|284802281|ref|YP_003414146.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           08-5578]
 gi|284995423|ref|YP_003417191.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           08-5923]
 gi|22095510|sp|Q8Y665|CARB_LISMO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|16411289|emb|CAC99913.1| pyrAB [Listeria monocytogenes EGD-e]
 gi|258601579|gb|EEW14904.1| pyrAB [Listeria monocytogenes FSL N3-165]
 gi|284057843|gb|ADB68784.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           08-5578]
 gi|284060890|gb|ADB71829.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           08-5923]
          Length = 1070

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   +Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAITVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGVNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSIQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|329890720|ref|ZP_08269063.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas diminuta
           ATCC 11568]
 gi|328846021|gb|EGF95585.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas diminuta
           ATCC 11568]
          Length = 1099

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGVQACKALKAEGYRVILVNSNPATIMTDPEVADATYIEPITPEMVEKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +          L    +    +       + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALNASGALARHGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I       D+   +  P +I+P    +  G  +    +     + +    +   ++LIE+
Sbjct: 149 IHHIEEADDALAFVGLPAIIRPSFTLAGTGGGIAYNVEEFHEIVERGLDLSPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDHADNCIIICSIENIDPMGVHTGDSITVAPAMTLTDKEYQMMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V++P       G++++   + +   + ++   +  D +LI+ Y++       V    
Sbjct: 724 YPVVLRPSYVLGGRGMMIVHDREGLDRYVGEAMRVSGDDPVLIDHYLN-RATEVDVDALC 782

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   +A    +       +S  ++  + P  +  +   E++R      +A+  RG+  
Sbjct: 783 DDETVFVAG-VLEHIEEAGVHSGDSACSMPPFSLRPETVAELKRQTTAMAKALKVRGLMN 841

Query: 246 SDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             F  +     + ++F LE+N +   T     P +A   G
Sbjct: 842 VQFAIEEPHSENPRIFVLEVNPRASRTA----PFVAKTIG 877


>gi|168213499|ref|ZP_02639124.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens CPE str. F4969]
 gi|170715072|gb|EDT27254.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens CPE str. F4969]
          Length = 1067

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++    PD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      ++    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|110803800|ref|YP_699823.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           SM101]
 gi|123047123|sp|Q0SPY4|CARB_CLOPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|110684301|gb|ABG87671.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens SM101]
          Length = 1067

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++    PD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      ++    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISDKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDSGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIKGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|255659411|ref|ZP_05404820.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella
           multacida DSM 20544]
 gi|260848373|gb|EEX68380.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Mitsuokella
           multacida DSM 20544]
          Length = 455

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 36/251 (14%), Positives = 83/251 (33%), Gaps = 25/251 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   ED      +    I +         L  DK  ++  +   G+P+      
Sbjct: 77  AIHPGYGFLSEDADFAEQVTAHGITWIGPMPETIRLVGDKDVARASMQPSGIPMAKGSEP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +  N+  +     +  P ++KP+ GG   G+ V   +  +   L         +      
Sbjct: 137 LKNNKEAIKMAKEVGYPVILKPVSGGGGKGMYVAHNEDDLKNILDALVDLKKTNYYFEHY 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                 +   ++ D   +V  +   +        + +           +  ++ K+V  L
Sbjct: 197 IERSRHIEVQIVADNYGEVIHLGERECSIQ----RRNQKLLEESPSIALTHEMRKQVGTL 252

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFR 286
           A  A +++    +   +FL D    + +++EIN +     G+T            G    
Sbjct: 253 AVKAAKSVHYSNVGTVEFLLDLKDNQFYFMEINPRIQVEHGVTE--------EVTGI--- 301

Query: 287 ELLLWMVEDAS 297
           +++   +  A+
Sbjct: 302 DIVRTQIRIAA 312


>gi|171059503|ref|YP_001791852.1| carbamoyl-phosphate synthase large subunit [Leptothrix cholodnii
           SP-6]
 gi|170776948|gb|ACB35087.1| carbamoyl-phosphate synthase, large subunit [Leptothrix cholodnii
           SP-6]
          Length = 1091

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 94/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPATADVTYIEPITWQVVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+++ K  ++S G+    S +
Sbjct: 89  TMGGQTALNCALDLHKNGVLDKYKVEMIGANEHAIEKAEDRLKFKDAMTSIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLI---------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEAWAVQKAIQADIGGAGFPMVIRPSFTLGGTGGGIAYNPEEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 KELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDREY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+
Sbjct: 269 QLLRNASIAILREIGVDTGGSNVQFSINPVDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKIAAKL 333



 Score = 41.0 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 92/300 (30%), Gaps = 37/300 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 587 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 646

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T    + +A   ++ +          P   +       +
Sbjct: 647 GGQTPLKLALDLERAGVPIIGTSPDSIDAAEDRERFQKLLHELGLKQPPNRTARTEEAAL 706

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              H I  P V++P        + ++  D+ +   +  +   +    +L+++++D     
Sbjct: 707 ALAHEIGYPLVVRPSYVLGGRAMEIVHGDKDLERYMRDAVRVSEKSPVLLDRFLDD---A 763

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
             V  D   D  ++ +     +  +    S +S   LP       +  E++R   +  + 
Sbjct: 764 VEVDVDCISDGVDVMMGAIMEHIEQAGVHSGDSACSLPPYTLSTVLQDELRRQTTVMAKG 823

Query: 238 IGCRGISRSDFLF--DPLSR----KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F    D         V+ LE+N +   T     P ++   G    ++   
Sbjct: 824 LKVVGLMNVQFAIQGDVTQGLDACTVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 879


>gi|261337962|ref|ZP_05965846.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           gallicum DSM 20093]
 gi|270277457|gb|EFA23311.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           gallicum DSM 20093]
          Length = 1122

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIDVPILEQIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      +L+   +    + + A     D+   K+VV   G     S +
Sbjct: 89  TLGGQTALNAAVALGEAGVLDKYNVELIGASLEAIDRGEDRESFKKVVEEAGAESARSEI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P V++P      LG  +    + +         ++  D++LIE+
Sbjct: 149 AHTLEEVDAIAEEFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEYELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPAFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|94676523|ref|YP_588989.1| carbamoyl-phosphate synthase, large subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219673|gb|ABF13832.1| carbamoyl-phosphate synthase, large subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 1079

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL +  ++V  +         D D            + V  ++A  +PD    
Sbjct: 29  SGVQACKALREENYRVVLVNSNPATIMTDPDMANATYIEPIHWKVVHKIIAKERPDAMLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + IL+   +    +   A   + ++    Q +   G+ +  S  
Sbjct: 89  TMGGQTALNCALDLNRKGILKDFGVEMIGATAHAIEQAENRQLFNQAMKKIGLDIPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               R   D    +  P +I+        G  +            +     H  QLLIE+
Sbjct: 149 ASNMREAKDVVANVGFPCIIRSSFTLGGTGGGIAYSQIDFQEICERGFDLFHHGQLLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDNKDNCIIVCALENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPTTGQLIIIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 88/290 (30%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   I         D D             +V  ++   +PD       G   
Sbjct: 588 ALREEGYEAIMINCNPETVSTDYDMSERLYLEPVTIENVLDIVRIEQPDGVIIQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQH 122
               +      + I  T    +  A + ++ ++         P   ++  +         
Sbjct: 648 LKLALALEAAGVPIIGTKPDAIDRAENRERFQNLINYLGLKQPPNATVTSIEMAVEKVAT 707

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +   P +++P        + +I  +  + +   ++ S +     ++ +      +   V 
Sbjct: 708 IGGYPLMVRPSYVLGGQAMNIIYNEMDLMISFQKAFSISVHKTPVLIEKFIDDAIEVDVD 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
                    I       +  +    S +S   LP   +  +I +E++R        +   
Sbjct: 768 AICDGKTVLIGG--IMEHIEQAGIHSGDSACSLPTYTMNHNIKEEIRRQVKKIALELQVI 825

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G+    F        V+ +E+N +   T     P ++   G +  ++   
Sbjct: 826 GLINVQFAI--KKNDVYLIEVNPRAART----VPFVSKAIGVALAKVATK 869


>gi|332158139|ref|YP_004423418.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2]
 gi|331033602|gb|AEC51414.1| carbamoyl phosphate synthase large subunit [Pyrococcus sp. NA2]
          Length = 1059

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 96/311 (30%), Gaps = 41/311 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                     + V  V+   KPD    
Sbjct: 24  SGSQALKALKEEGIETILVNPNVATIQTSHEMADRVYLLPLDVKFVEKVIKKEKPDGILL 83

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G                    +++  T    +  AL   K R   + +   +P   +
Sbjct: 84  GFGGQSALSLGVALYESGILDKYGVKVLGTPIEGIKKALDRGKFRKTMMKAGLPIPPSGA 143

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G  V    +     ++++ + +   ++L+E+
Sbjct: 144 AKSVEEAIEIAEKIGFPVIVRVSFNLGGRGSFVAWNREEFENYIIRAFAQSEIGKVLVEK 203

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+                   +AV   + +     ++  +        +    Y+ ++  
Sbjct: 204 YLYHW-KEIEFEVVRDKKGNAVAVACLENFDPMGVHTGDSIVIAPCQTLTNREYQMLRNA 262

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
           A    +AI   G        +P S + + +E N  P M+  S        +P     A  
Sbjct: 263 AIKVAEAIDLIGECNVQLALNPKSEEFYVIETN--PRMSRSSALASKVTGYPLAYIAAKL 320

Query: 280 YAGYSFRELLL 290
             GY+  ELL 
Sbjct: 321 ALGYTLDELLN 331


>gi|330807472|ref|YP_004351934.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327375580|gb|AEA66930.1| Carbamoyl-phosphate synthase (ammonia), large chain [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1073

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLDCPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLERLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 88/284 (30%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALRDDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 SDGKDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|323703501|ref|ZP_08115147.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323531492|gb|EGB21385.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 1074

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 97/293 (33%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G KV  +           D+            S+  ++A  +PD     
Sbjct: 30  GTQACKALKEEGIKVVLVNSNPATIMTDGDIADKVYIEPLTWESLEKIIAKERPDGLLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +       + ILE  ++    + +     + D+   ++  +     VP     
Sbjct: 90  LGGQTGLNLAVELSERGILEKYQVALLGTSLETIKRAEDRELFKATMLEIGEPVPESTIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +++ +Q +     +    +  +Q+L+EQ 
Sbjct: 150 STVEECIAFANQIGYPLIVRPAYTLGGTGGGIVRNEQELVAVCHRGLKMSMINQVLLEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +     +                 + Y+ ++  A
Sbjct: 210 VAGWKEIEYEVMRDNADNCITICNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+   G     F  DP S K   +E+N  P ++  S     +   GY 
Sbjct: 269 LKIIRALKVAGGCNVQFALDPHSMKYIVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 84/271 (30%), Gaps = 17/271 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   +P+       G    +   +     + I  T    + 
Sbjct: 608 DKLYFEPLTV---EDVMNIIDKERPNGVVVQFGGQTAINLAGELAAMGVNILGTPVEGID 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +A   +K                +             +  P +++P        + ++  
Sbjct: 665 AAEDREKFEKLLKNLGIPQTEGKTATTVEQARQIARELGFPVLVRPSYVLGGRAMEIVHN 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +   +    +L+++YV G E+    +GD         +   +       +
Sbjct: 725 EDQLLKYMSSAVQVSPKHPVLVDKYVRGKEVEVDAIGDGQHIFIPGIMEHIERAG---VH 781

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263
           S  +     P  +     + V        +A+   G+    ++      +V+ LE+N   
Sbjct: 782 SGDSIAVYPPQSLTKREKELVVDYTVRIGEALKICGLMNIQYVVGE--GEVYVLEVNPRA 839

Query: 264 --VQPGMTPVSIFPEMAAYA----GYSFREL 288
               P ++ V+  P +        G+S  EL
Sbjct: 840 SRTVPILSKVTGVPMVQTATRCMLGHSLAEL 870


>gi|164686618|ref|ZP_02210646.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM
           16795]
 gi|164604347|gb|EDQ97812.1| hypothetical protein CLOBAR_00211 [Clostridium bartlettii DSM
           16795]
          Length = 1068

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 89/292 (30%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL     +   +         D D              V  ++   KP+       G
Sbjct: 580 CIKALRKLDIETIIVNNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K        +   P   ++      +  
Sbjct: 640 QTAIKLAKFLDEKNIPILGTDFADIDAAEDREKFDELLEKLNINRPKGIAVWSTEEGVKH 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 ASEIGYPVLVRPSYVLGGQGMEITYNEAKLKAYLDSAFERDSKNPVLIDKYLVGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P   I  DI  ++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSITMYPSQNISDDIKAKILDYTKRISLELN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFKGELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 94/318 (29%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                      ++  V+   +PD    
Sbjct: 29  SGTQACEALKEEGVEVVLINSNPATIMTDKEVAHKIYIEPLTIEAIEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +  V+           +++  T    +      D+ R      +  V     
Sbjct: 89  GMGGQTALNLAVELADAGILDKYGVKVIGTSIKSIKKGEDRDEFREMMRSINQPVIESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  + +  + +   L      +   Q+LIE+
Sbjct: 149 VTNLEDGIIYAEKIGYPVIIRPAYTLGGTGGGIAENKEELIEILTHGLQLSPVTQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +    Y+ ++  
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDKEYQLLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G         P   +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIEIINAIEVKGGCNVQIALHPHRLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|91792356|ref|YP_562007.1| carbamoyl phosphate synthase large subunit [Shewanella
           denitrificans OS217]
 gi|91714358|gb|ABE54284.1| carbamoyl-phosphate synthase large subunit [Shewanella
           denitrificans OS217]
          Length = 1075

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIAKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++A   L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALQLEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLDCPRAGI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              MD  +    ++  P +I+P       G  +    +       Q    +  ++LLI++
Sbjct: 149 AHNMDEAYGVLDMVGFPCIIRPSFTMGGSGGGIAYNKEEFEEICSQGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +      +   P   ++      +     
Sbjct: 647 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAIQRLNMKQPENATVTTVESAVIEGEK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++   Q +     ++ S ++   +L++ ++D  IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDKQDLLRYFNEAVSVSNASPVLLDHFLDDAIEVDIDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +   + P  +   I  E++         +G  G
Sbjct: 767 CDGETVVVGAIMEHIEQAG---VHSGDSGCSLPPYTLSQAIQDEMRVQVSKLAFELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNVQFAV--KDNEIYMIEVNPRAART----VPFVSKATGVPLAKIAAR 866


>gi|28379200|ref|NP_786092.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           WCFS1]
 gi|29337221|sp|P77886|CARB_LACPL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|28272038|emb|CAD64943.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Lactobacillus plantarum WCFS1]
          Length = 1058

 Score = 63.4 bits (152), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 89/293 (30%), Gaps = 30/293 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   D+        +   P   +       +    
Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++KK   +   +  +   +H   +L++ Y+ G E     +
Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++         A+ C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +    F+      +V+ +E+N +   T     P ++        ++    + D
Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAILD 862



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++  ++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ ++        VP    
Sbjct: 89  TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + +  Q +        + +   Q+LIEQ
Sbjct: 149 ARTVDEALAFAKQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|308181401|ref|YP_003925529.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ST-III]
 gi|308046892|gb|ADN99435.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ST-III]
          Length = 1058

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   D+        +   P   +       +    
Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++KK   +   +  +   +H   +L++ Y+ G E     +
Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++         A+ C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++    +
Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++  ++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ ++        VP    
Sbjct: 89  TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + +  Q +        + +   Q+LIEQ
Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|300768577|ref|ZP_07078476.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
 gi|300493884|gb|EFK29053.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Lactobacillus plantarum subsp. plantarum ATCC 14917]
          Length = 1058

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   D+        +   P   +       +    
Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++KK   +   +  +   +H   +L++ Y+ G E     +
Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++         A+ C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++    +
Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++  ++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ ++        VP    
Sbjct: 89  TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + +  Q +        + +   Q+LIEQ
Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|254557332|ref|YP_003063749.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
 gi|1514603|emb|CAA91005.1| carbamoyl-phosphate synthase [Lactobacillus plantarum]
 gi|254046259|gb|ACT63052.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
          Length = 1058

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   D+        +   P   +       +    
Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++KK   +   +  +   +H   +L++ Y+ G E     +
Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++         A+ C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++    +
Sbjct: 816 MMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++  ++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ ++        VP    
Sbjct: 89  TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + +  Q +        + +   Q+LIEQ
Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|212639971|ref|YP_002316491.1| carbamoyl phosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
 gi|212561451|gb|ACJ34506.1| Carbamoylphosphate synthase large subunit [Anoxybacillus
           flavithermus WK1]
          Length = 1034

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 51/311 (16%), Positives = 100/311 (32%), Gaps = 41/311 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V   + +                      S+  ++A  +PD    
Sbjct: 29  SGTQGCLALKEEGYRVILANNNPATIMTDEVHADAVYFEPLTVESIEKIIAKERPDGLLA 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G         + IL+   +    + I +     D+   R+     +  VP    
Sbjct: 89  TLGGQTGLNLAFALHERGILQKYNVRLLGTPIESIQRGEDREAFRALMYELNEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  + +    +   + +    +   Q L+E+
Sbjct: 149 VTTVEEAVQFAKQIGFPIIVRPAYTLGGTGGGIAETMDELVDIVTKGLQESPITQCLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I +   +       ++  +        +    Y  ++  
Sbjct: 209 SVAG-FKEIEYEVMRDHTNTCITICNMENIDPVGIHTGDSIVVAPSQTLTDVEYHMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279
           A     A+G  G     F  DP S+K + +E+N  P ++  S        +P     A  
Sbjct: 268 AIKIISALGVVGGCNIQFALDPKSKKYYLIEVN--PRVSRSSALASKATGYPIARMAAKL 325

Query: 280 YAGYSFRELLL 290
             GY+  EL+ 
Sbjct: 326 AVGYTLAELIN 336



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 85/294 (28%), Gaps = 41/294 (13%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+ AG++   I+ +                       V  V+     +       G   
Sbjct: 583 ALQQAGYEAILINNNPETVSTDFTVADRLYFEPLTVEDVLNVVEAENVEAVIVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I   +S  +      ++  +                           
Sbjct: 643 INLASKLEAYGVSIIGMNSDTIDQLEDRERFYTLLQSLDIPHVKGAMANDETELWRKVEE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ ++   Q +   + Q   +     +LI++YV   E     + 
Sbjct: 703 IGYPLLLRPSYVIGGRGMHIVHDKQQLSALVEQGIVY----PVLIDEYVRAKEGELDAIC 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +   +       +  +++        + +  +G+
Sbjct: 759 DGYDAFVPTIIEHVEKTG---VHSGDSYALLPAQSFTKEEKEKMIDYTKRITKKLYFKGL 815

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+      +V+ LE+N +   T     P ++   G         MV+ A+
Sbjct: 816 MNVQFIV--RDGEVYVLEVNPRASRT----VPVVSKVTGVP-------MVQHAT 856


>gi|20807298|ref|NP_622469.1| carbamoylphosphate synthase large subunit (split gene in MJ)
           [Thermoanaerobacter tengcongensis MB4]
 gi|22095499|sp|Q8RBK0|CARB_THETN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|20515809|gb|AAM24073.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Thermoanaerobacter tengcongensis MB4]
          Length = 1072

 Score = 63.4 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  +         D D              V  ++A  +PD    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVEVVEKIIAKERPDGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + + +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEAGILDKYNVKLLGTSVESIKTAEDRELFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNVEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPAQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY 
Sbjct: 268 SIKIIRALKIEGGCNIQFALDPQSHKYYVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 14/263 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +   + +   ++I  T    + 
Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEELVKNEVKILGTSFKSID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +  P +++P        +  +  
Sbjct: 663 ISEDREKFSKLLKELNINQPKGGYALTVEDAKDIALKLGFPLLVRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q +   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQELIDYVKHATEVSPGKPVLIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERTGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLTEREINTIIEYTEKISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P M+   G    +L
Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855


>gi|328760626|gb|EGF74193.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL099PA1]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|325285852|ref|YP_004261642.1| ATP-grasp fold domain-containing protein [Cellulophaga lytica DSM
           7489]
 gi|324321306|gb|ADY28771.1| ATP-grasp fold domain protein, DUF201-type [Cellulophaga lytica DSM
           7489]
          Length = 347

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 52/332 (15%), Positives = 103/332 (31%), Gaps = 56/332 (16%)

Query: 6   GGISSEREVSLSSGKACASALEDAGFKV-SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           GG S        SG   A  L +   K+ + +D + S+   L     D  F         
Sbjct: 24  GGYS-------DSGADIACELHNNNIKISTPVD-NPSIENNL-----DWVFPDTEEGIQN 70

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----------- 113
                A +  L      +  +    +++     Q+ S   +                   
Sbjct: 71  AINKGATVFWLNTVLYKTHPIEKFFNLNNYFVGQLPSVVDIYDDKWTTNKLLKENGILIP 130

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-SWNHGDQLLI 168
                       +    P V+KP++G  S G+ ++K ++ +   L     S  +G  + +
Sbjct: 131 ETTLITEGDTINYKGDFPIVVKPIRGRGSQGVSLVKNEKELNAKLSSLFLSKQYGTSVYL 190

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---------- 218
           EQ++ G E+T  VM   S  +       +  +         +   + P            
Sbjct: 191 EQFLSGQEITITVMPSGSYIINNNKKQFTTAWCLPPVKRFNHQNGIAPYNGTVAVIKNSA 250

Query: 219 ------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--- 269
                    +    V +    A + +  +   R D   D      +  ++N++P MT   
Sbjct: 251 LLDNSERNSNQIIAVCKQCEKAAELLHIKAPIRIDCRADEKGN-YYLFDVNMKPNMTGPS 309

Query: 270 ------PVSIFPEMAAYAGYSFRELLLWMVED 295
                   S+    A   G+++ +LL  M+  
Sbjct: 310 RPQRKNQDSLSSLAARGIGWNYFDLLKNMLNQ 341


>gi|315084350|gb|EFT56326.1| carbamoyl-phosphate synthetase large chain, oligomerisation domain
           protein [Propionibacterium acnes HL027PA2]
          Length = 590

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|313818526|gb|EFS56240.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL046PA2]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVSPPQRMSQHVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|313637314|gb|EFS02805.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri FSL
           S4-171]
          Length = 1064

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.6 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNIIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|313632744|gb|EFR99713.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri FSL
           N1-067]
          Length = 1070

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.6 bits (98), Expect = 0.070,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNIIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|301055377|ref|YP_003793588.1| carbamoyl-phosphate synthase large subunit [Bacillus anthracis CI]
 gi|300377546|gb|ADK06450.1| carbamoyl-phosphate synthase large subunit [Bacillus cereus biovar
           anthracis str. CI]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|326789550|ref|YP_004307371.1| urea carboxylase [Clostridium lentocellum DSM 5427]
 gi|326540314|gb|ADZ82173.1| urea carboxylase [Clostridium lentocellum DSM 5427]
          Length = 1197

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +             +      +++       
Sbjct: 147 AKKIGYPVILKSTAGGGGIGMRICYSFKELKEAYEGVCYLAAANFNNAGVFLEKYIEKSR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            +                     ++  +       PA    +  +     A     +   
Sbjct: 207 HVEVQIFGNAYGEAVALGERDCSVQRRNQKVVEESPAPNLPEKVRAAMYKAAEDLAKEAS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +     +FL+D    K ++LE+N +     G+T            G    +L+ WM+++
Sbjct: 267 YQSAGTVEFLYDEAEEKFYFLEVNTRLQVEHGITE--------EVLGL---DLVSWMIKE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|289435178|ref|YP_003465050.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289171422|emb|CBH27966.1| carbamoyl-phosphate synthase, large subunit [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 1070

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYTFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 42.6 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|289427092|ref|ZP_06428808.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J165]
 gi|289159561|gb|EFD07749.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes J165]
 gi|313772127|gb|EFS38093.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL074PA1]
 gi|313807482|gb|EFS45969.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL087PA2]
 gi|313809991|gb|EFS47712.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL083PA1]
 gi|313820293|gb|EFS58007.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA1]
 gi|313822899|gb|EFS60613.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA2]
 gi|313825168|gb|EFS62882.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL063PA1]
 gi|313830319|gb|EFS68033.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL007PA1]
 gi|313833694|gb|EFS71408.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL056PA1]
 gi|314925179|gb|EFS89010.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL036PA3]
 gi|314960037|gb|EFT04139.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA2]
 gi|314973324|gb|EFT17420.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL053PA1]
 gi|314976002|gb|EFT20097.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL045PA1]
 gi|314978460|gb|EFT22554.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL072PA2]
 gi|314983978|gb|EFT28070.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA1]
 gi|314988161|gb|EFT32252.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA2]
 gi|314989965|gb|EFT34056.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL005PA3]
 gi|315085691|gb|EFT57667.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL002PA3]
 gi|315088888|gb|EFT60864.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL072PA1]
 gi|315096239|gb|EFT68215.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL038PA1]
 gi|327326152|gb|EGE67942.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL096PA2]
 gi|327331972|gb|EGE73709.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL096PA3]
 gi|327443174|gb|EGE89828.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL013PA2]
 gi|327445961|gb|EGE92615.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL043PA2]
 gi|327448060|gb|EGE94714.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL043PA1]
 gi|328753505|gb|EGF67121.1| carbamoyl-phosphate synthase, large subunit [Propionibacterium
           acnes HL020PA1]
 gi|332675400|gb|AEE72216.1| carbamoyl-phosphate synthase large chain [Propionibacterium acnes
           266]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        DR V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDRDVADKVYIEPITLEFVSSILRRERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +      E+  T    +  A   D  +         VP    +
Sbjct: 90  LGGQTGLNMATELAKSGILDELGIELLGTKPSAIEKAEDRDLFKQLMDELGQPVPASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   +  +   + +    +   + LIEQ 
Sbjct: 150 HTVDEAVKVGNTIGYPLIVRPAYTLGGTGGGMCCDEAELVRIVGKGLELSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     M     D T +     +F    +                ++ ++ ++  +
Sbjct: 210 IAGFKEIEYEMMRDGADNTMVVCTMENFDPVGVHTGDSIVFAPTQTLTDVE-HEMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IEIVRTLGIEGGCNVQLALDPNSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +PD       G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVVDLEQPDGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +   S             +   +        
Sbjct: 639 AINLAGPLSAAGVPILGTQVADLDRAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++   + +   +  +   +    +L+++Y++G+E     +
Sbjct: 699 ELGYPVLVRPSYVIGGRAMAIVTSAEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +       +S  +     P ++   +   +  +     + +  +G
Sbjct: 759 CDGTDVLIPGIMEHIERAG---VHSGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKG 815

Query: 243 ISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+   DP + +  V+ +E N +   T     P ++   G S  E+   ++
Sbjct: 816 ILNIQFVVANDPATGEETVYVIEANPRASRT----VPFLSKVTGVSMAEVATRII 866


>gi|228935202|ref|ZP_04098028.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228824367|gb|EEM70173.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 81/259 (31%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93
             V  ++   +PD     L G  G +  V+           +EI  T    +  A   D 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            R+     +   P    I            I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVKEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229031518|ref|ZP_04187518.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271]
 gi|228729807|gb|EEL80787.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH1271]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229197998|ref|ZP_04324712.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293]
 gi|228585477|gb|EEK43581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1293]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|254411813|ref|ZP_05025589.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
 gi|196181535|gb|EDX76523.1| D-ala D-ala ligase C-terminus family [Microcoleus chthonoplastes
           PCC 7420]
          Length = 340

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 50/282 (17%), Positives = 87/282 (30%), Gaps = 23/282 (8%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              I +  ++   +     DL              +     L ++         + L   
Sbjct: 66  AKPISLAEAIQW-ITTQNIDLVLP----QMFCIPGMTHYRGLFDLLNIPYVGNKAELMAL 120

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                +  +                      + PP VIKP    +SLG+ +++       
Sbjct: 121 TAHKAKAKAIVAAAGVKVPYGELLHQGDTPNLMPPVVIKPANSDNSLGVTLVRNMADYDE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS---- 208
            L Q+  +   + L+ +    G E+ CG        +       S         +     
Sbjct: 181 ALTQAFHYA-DEVLVEDYIELGREVRCGTFVKNGTLIGLPLEEYSVNTQNHPIRNYSDKL 239

Query: 209 ------------LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                        N+           I  +VQ +A   H+A+GCR  S  DF  DP   +
Sbjct: 240 KKTETGELTCAAKNNEKAWIVDTTDPITTKVQDVAKQCHKALGCRHYSLFDFRIDPQ-GQ 298

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
            ++LE  +    +P S+   MA  AG S  ELL   + +A  
Sbjct: 299 PWFLEAGLYCSFSPKSVVACMAKAAGISVDELLKTAIAEALI 340


>gi|306827566|ref|ZP_07460847.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes
           ATCC 10782]
 gi|304430218|gb|EFM33246.1| carbamoyl-phosphate synthase, large subunit [Streptococcus pyogenes
           ATCC 10782]
          Length = 1058

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAQALSEAGVTILGTQVEDLDRAEDRDLFEKALKELGIPQPQGQTATNEEEALEAAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKEDLREYIRTAVKASPEHPILVDSYIFGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P ++   I + +          + C G
Sbjct: 759 SDGKSVLIPGIMEHIERAG---VHSGDSMAVYPPQQLSKQIQETIAEYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    ++   ++
Sbjct: 816 MMNVQFVI--KNEQVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKLI 860



 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+KV  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDKEIADKVYIEPLTLEFVNRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
           L G      +  A+ +   +      +L + L         D  +         +P    
Sbjct: 90  L-GAQTGLNMAMALSKAGILDDLEIELLGTKLSAIDQAEDRDLFKQLMQELDQPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +   ++ +          +   Q LIE+
Sbjct: 149 VKTVDEAVTFARDIGYPVIVRPAFTLGGTGGGICSSEEELCEITENGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +F    +                ++  + ++  
Sbjct: 209 SIAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKIIRALKIEGGCNVQLALDPYSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|254445945|ref|ZP_05059421.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae
           bacterium DG1235]
 gi|198260253|gb|EDY84561.1| carbamoyl-phosphate synthase, large subunit [Verrucomicrobiae
           bacterium DG1235]
          Length = 1079

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 90/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +              DV         +V  ++A  +PD    
Sbjct: 29  SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTIDAVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAIL--ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G    +  ++      L E      G    A+   + R     +   + +  +    
Sbjct: 89  TLGGQTALNLSLELEAAGILHEYGVEMIGAKPDAIKKGEDRELFKEAMLKIGLDVAHSRT 148

Query: 115 RFTMDSQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             +++        +   P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VNSLEEARSAAKEIGGFPLIIRPSFTMGGSGGGIAYNREEFEDIVSNGLELSPVHEVLVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +F    +      +          +       
Sbjct: 209 ECLLGWKEYEMEVMRDRKDQCVVICSIENFDPMGVHTGDSITVAPAMTLSDREYQAMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SFAVIREIGVETGGSNIQFSLCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/175 (10%), Positives = 64/175 (36%), Gaps = 8/175 (4%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +   ++  P +++P       G+ ++     +   + ++   +    +L++++++    
Sbjct: 703 YEMADVVGFPLLLRPSFVLGGRGMFIVHTMDEMKAVIREAFDASPDKPVLLDKFLEDAIE 762

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                           +   +   Y   +S   +  + P  +  ++ + V++ +F   +A
Sbjct: 763 LDVDCISDGETSIIGGM--LEHIEYAGVHSGDAAMVLPPHTLGKEMIETVRQASFRLAKA 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F       +++ LE+N +   T     P ++   G    ++   +
Sbjct: 821 LKVVGLMNIQFAI--KDDELYVLEVNPRASRT----VPFVSKAIGVPLAKVAAKI 869


>gi|330813714|ref|YP_004357953.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           sp. IMCC9063]
 gi|327486809|gb|AEA81214.1| carbamoyl-phosphate synthase large chain [Candidatus Pelagibacter
           sp. IMCC9063]
          Length = 1071

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL+  G+KV  I         D + +    +               KPD    
Sbjct: 29  SGTQACKALKKEGYKVILINSNPATIMTDPNVADKTYIEPITSEILEEIIKIEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         IL+   I    +   A   + D+ + K+ ++  G+    S++
Sbjct: 89  TMGGQTGLNAAMLLHKNGILKKYNIELIGANAEAIDKAEDRQKFKKHMNEIGLESARSLI 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I+ P +I+P       G  V   ++     L    S +   ++L+E+
Sbjct: 149 CTSIDQAKKILEEINLPVIIRPSFTLGGTGGGVANTEEEYLKILKNGLSLSPTHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLVGWKEFEMEVVRDKKDNCIIICSIENIDPMGIHTGDSMTVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDCLRKIGVETGGSNVQFAINPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + +I  D+ +   + ++   +  + +L++++  D IE+  
Sbjct: 707 AKKIKYPLVIRPSYVLGGRAMEIIHDDEQLTRYIQEAVKVSGNNPVLLDRFLNDAIEVDV 766

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +           ++  + P  +  +I  EV++       +IG
Sbjct: 767 DAICDGENVFVSGVMEHIEEAGIHSG---DSACCIPPYSLSEEIINEVKKQTKKLATSIG 823

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F      + ++ LE+N +   T     P ++  +  S  ++   
Sbjct: 824 VVGLINIQFAI--QDKNIYVLEVNPRASRT----VPFVSKASNISVAKIATK 869


>gi|304404040|ref|ZP_07385702.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus
           curdlanolyticus YK9]
 gi|304347018|gb|EFM12850.1| carbamoyl-phosphate synthase, large subunit [Paenibacillus
           curdlanolyticus YK9]
          Length = 1070

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/293 (16%), Positives = 95/293 (32%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + GF+V  I+ +                       V  ++   KPD     
Sbjct: 30  GTQACQALMEEGFEVVLINSNPATIMTDTNMAHKVYIEPITLEFVSQIIRQEKPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+         E +++  T    +  A   D  R         VP    +
Sbjct: 90  LGGQTGLNMAVELARAGVLERENVKLLGTQLDAIERAEDRDLFRELMRELEQPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  +   ++ +   +     ++  +Q LIE+ 
Sbjct: 150 TTVEEAVDFANEIGYPIIVRPAYTLGGTGGGICANEEELLETVASGIRYSPINQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-MKEVEYEVMRDANDNCIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+   G     F  DP S + + +E+N  P ++  S     +   GY 
Sbjct: 269 LKIIRALSIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 588 AIQKAGYEAVIINNNPETVSTDFSTSDRLYFEPLFFEDVMNVIEQEQPIGVIVQFGGQTA 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  +    + +A    K  +     +   P   ++      +     
Sbjct: 648 INLAAPLAKAGVRILGSSLESIDAAEDRKKFEAMLRKLNIAQPEGSTVTNVDEAVAVAQG 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D  + L + ++   N    +LI++Y+ G E     + 
Sbjct: 708 LGYPVLVRPSYVLGGRAMEIVYSDTELLLYMKEAVKINPEHPVLIDRYMLGKEAEVDAIC 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  DI +++  +     + +   G+
Sbjct: 768 DGETVLIPGIMEHVERAG---VHSGDSIAVYPPQSLSDDIKQQIIDITIKIAKELQVIGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      KV+ +E+N +   T     P ++         L    +
Sbjct: 825 VNIQFVIHEE--KVYVIEVNPRSSRT----VPFLSKVTNLPMANLATKAI 868


>gi|170695454|ref|ZP_02886599.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis
           C4D1M]
 gi|170139645|gb|EDT07828.1| carbamoyl-phosphate synthase, large subunit [Burkholderia graminis
           C4D1M]
          Length = 1084

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 87/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLHAHGVLTKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGT 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALSVQADIAAQTGSGGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QVLRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFESLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 KLADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCISDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVIGLMNVQFAIQQVPQADGSKEDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|163750536|ref|ZP_02157774.1| D-alanine--D-alanine ligase [Shewanella benthica KT99]
 gi|161329691|gb|EDQ00680.1| D-alanine--D-alanine ligase [Shewanella benthica KT99]
          Length = 295

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 93/284 (32%), Gaps = 18/284 (6%)

Query: 28  DAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSG 83
            AG+ V+  + V R     +   +P L       +  +   D  +        I +T S 
Sbjct: 3   KAGYAVNLNLCVSREDLDEIVARQPSLVVLAVKYIPLDNENDIWLADYFADHGINFTGSS 62

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL--ISPPYVIKP---LKGGSS 138
                   +K+ +K  +S+ G+              ++H   I+ P  +KP     G   
Sbjct: 63  RDVLDFDSNKVSAKDHLSAKGIATARYFTAIPGQYKNEHELPITFPLFLKPLDAANGNGV 122

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
                +          + S         L+E+Y+ G E T  ++  ++  +    +    
Sbjct: 123 DDSSFVTNFLEF-EAKIASLDKEFNHPTLVEEYLPGREFTVAIIQASNGQLLVSPIELVP 181

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-----FLAHQAIGCRGISRSDFLFDPL 253
             S               ++    I  +  +             +G R   R D +    
Sbjct: 182 PESKNGLRILGAKVKKDDSEELKKIDDDAMKTRVKALAIECFVHLGVRDYGRID-ILADK 240

Query: 254 SRKVFWLEINVQPGMTP-VSIFPEMAA-YAGYSFRELLLWMVED 295
           S + F++E N+ PGMT   S FP         ++ E++  ++E 
Sbjct: 241 SGQCFFIEANLVPGMTSGSSYFPLACEIEHQLTYDEVVNLIIEQ 284


>gi|88812985|ref|ZP_01128228.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrococcus mobilis Nb-231]
 gi|88789763|gb|EAR20887.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Nitrococcus mobilis Nb-231]
          Length = 1073

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     R+V  V+A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPQTADRVYIEPINWRTVASVIARERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D     +L+   +    +   A   + D+   +  ++  G+    +  
Sbjct: 89  TMGGQTALNCALDLAKHGVLDEYRVEMIGARQAAIDKAEDREAFRTAMADIGLLTPRARI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +     +      +  +++L+E+
Sbjct: 149 AHSREEALQVQAQIGFPTIIRPSFTLGGSGGGIAYNREEFVEIVECGLDLSPTNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +  S  +      +          +        
Sbjct: 209 SVLGWKEYELEVVRDHSDNCIIICSIENVDSMGIHTGDSITVAPAQTLTDKEYQLMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPANGQMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 102/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKA-------CASAL--EDAGFKVSQI---------DVD--- 39
           + VL GG +         G+          +AL   + G++   +         D D   
Sbjct: 561 IIVLGGGPN-------RIGQGIEFDYCCVHAALAMREDGYESIIVNCNPETVSTDYDTSD 613

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++   +P        G                I  T    +  A  
Sbjct: 614 RLYFEPLTLEDVLEIVEKEQPSGVIVQYGGQTPLKLARALEAYGAPIIGTSPESIDLAED 673

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   S +     +D    I  P V++P        + ++ +D  +
Sbjct: 674 RERFQHLISQLGLQQPPNRSAVAVEQALDLARQIGYPLVVRPSYVLGGRAMEIVYEDADL 733

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++   +    +L+++++D       V  DA  D  ++ +     +  +    S +
Sbjct: 734 LQYMREAVKVSPEAPVLLDRFLDD---AVEVDVDAVCDGHDVLIGGIMEHIEQAGVHSGD 790

Query: 211 STHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S   LPA      I + ++    L    +G  G+  + F       +++ LE+N +   T
Sbjct: 791 SACSLPAYTLSATIGERLREQVRLLAIKLGVIGLMNTQFAI--KDDEIYLLEVNPRASRT 848

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P +A   G +  ++   
Sbjct: 849 ----VPFVAKATGLALAKIAAR 866


>gi|119944658|ref|YP_942338.1| carbamoyl phosphate synthase large subunit [Psychromonas ingrahamii
           37]
 gi|119863262|gb|ABM02739.1| carbamoyl-phosphate synthase large subunit [Psychromonas ingrahamii
           37]
          Length = 1076

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D +            V  ++A  +P     
Sbjct: 29  SGAQACKALKEEGYRVVLVNSNPATIMTDPDMADATYIEPIHWQVVEKIIAKERPCAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +   + IL    +    +   A   + D+ R    +   G+    + +
Sbjct: 89  TMGGQTALNCALELEAKGILAKYNVEMIGATADAIDKAEDRSRFDTAMKKIGLACPRAGI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +    +            +   +LLI++
Sbjct: 149 AHNMDEAYAVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFDDICTNGLDLSPTTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPEDGRMVLIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 89/263 (33%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   KP        G              + I  T    + 
Sbjct: 613 DRLYFEPITL---EDVLEIVRVEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPEAID 669

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   ++      ++S   I  P V++P        + ++  
Sbjct: 670 RAEDRERFQQVVERLGLKQPENDTVTTLEQAVESAKHIGYPLVVRPSYVLGGRAMEIVYD 729

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +      + S ++   +L+++++D       V  DA  D T++ +     +  +   
Sbjct: 730 EVDLRRYFKDAVSVSNESPVLLDRFLDD---AIEVDIDAICDGTDVVIGAIMEHIEQAGV 786

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S   LPA    ++I  E++         +G  G+  +         +V+ +E+N +
Sbjct: 787 HSGDSACSLPAYTLSVEIQDEIRGYIRSLALELGVIGLMNTQLAV--KDNEVYMIEVNPR 844

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G    ++
Sbjct: 845 AART----VPFVSKATGVPIAKI 863


>gi|148259922|ref|YP_001234049.1| carbamoyl phosphate synthase large subunit [Acidiphilium cryptum
           JF-5]
 gi|326403124|ref|YP_004283205.1| carbamoyl-phosphate synthase large subunit [Acidiphilium multivorum
           AIU301]
 gi|146401603|gb|ABQ30130.1| carbamoyl-phosphate synthase large subunit [Acidiphilium cryptum
           JF-5]
 gi|325049985|dbj|BAJ80323.1| carbamoyl-phosphate synthase large subunit [Acidiphilium multivorum
           AIU301]
          Length = 1081

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEMVEKIIIKERPDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +       + D+++ +  ++  G+    S +
Sbjct: 89  TMGGQTALNTAMALAKAGTLEKHGVELIGARAEVIDRAEDRLKFRDAMAEIGIESPRSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          L+  P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTMDEARAALDLVGLPAVIRPSFTLGGTGGGIAYNREEFLEIVAGGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDQADNCIIVCSIENIDPMGVHTGDSVTVAPALTLTDREYQLMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLRKIGVDTGGSNVQFGINPADGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 27/167 (16%), Positives = 59/167 (35%), Gaps = 10/167 (5%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P VI+P        + ++    S+   + ++   +  + +LI++Y  D IE+    
Sbjct: 712 RIGFPVVIRPSYVLGGRAMEIVYDLASLRRYMREAVVVSGTNPVLIDRYLNDAIEVDVDC 771

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D         +   +           ++  + P  +   I  E++       +A+   
Sbjct: 772 IADGQSVYVAGVMEHIEEAGIHSG---DSACSLPPYSLSPAIVAELRAETEAMAKALNVI 828

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F        V+ LE+N +   T     P +A   G    ++
Sbjct: 829 GLMNVQFAI--QGENVYVLEVNPRASRT----VPFVAKATGVPVAKI 869


>gi|325265118|ref|ZP_08131844.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
 gi|324029522|gb|EGB90811.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
          Length = 1072

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 105/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     IL+  ++      + A     D++  K+ ++  G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAAEGILDKYKVEVIGVQVDAIERGEDRIEFKKAMNELGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYTVEEALDIADDLGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +     +         +       ++  +        I  +  K +Q  
Sbjct: 209 SILGWEELELEVVRDKENNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQDQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYRIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R         +P     +     +     
Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFREMMEKLQIPMPESGMAVNVEEAISIAQN 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDKSMANYMAAAVGVTPDRPILIDRFLN---HALECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+    +   K ++       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISEENVKTIKDYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     + KV+ LE N +   T     P ++         L   ++
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862


>gi|208780074|ref|ZP_03247417.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida
           FTG]
 gi|208744078|gb|EDZ90379.1| carbamoyl-phosphate synthase, large subunit [Francisella novicida
           FTG]
          Length = 1094

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|118496635|ref|YP_897685.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. novicida U112]
 gi|194323942|ref|ZP_03057717.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. novicida FTE]
 gi|118422541|gb|ABK88931.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           U112]
 gi|194321839|gb|EDX19322.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. novicida FTE]
          Length = 1094

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|255327149|ref|ZP_05368224.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa
           ATCC 25296]
 gi|255295767|gb|EET75109.1| carbamoyl-phosphate synthase, large subunit [Rothia mucilaginosa
           ATCC 25296]
          Length = 1106

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       +  ++   KPD    
Sbjct: 29  SGTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKIIEKEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +       + +L    +    + I A  L  D+   K VV   G     S+ 
Sbjct: 89  TLGGQTALNAAISLDERGVLSKYNVELIGANIEAINLGEDREAFKGVVERAGGESARSVI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   ++ +         ++   ++L+E+
Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M   + D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDTNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREFQKLRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAIDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|47096556|ref|ZP_00234146.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           str. 1/2a F6854]
 gi|254831564|ref|ZP_05236219.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           10403S]
 gi|254899468|ref|ZP_05259392.1| carbamoyl phosphate synthase large subunit [Listeria monocytogenes
           J0161]
 gi|254912393|ref|ZP_05262405.1| carbamoyl-phosphate synthase [Listeria monocytogenes J2818]
 gi|254936720|ref|ZP_05268417.1| carbamoyl-phosphate synthase [Listeria monocytogenes F6900]
 gi|47015088|gb|EAL06031.1| carbamoyl-phosphate synthase, large subunit [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258609317|gb|EEW21925.1| carbamoyl-phosphate synthase [Listeria monocytogenes F6900]
 gi|293590375|gb|EFF98709.1| carbamoyl-phosphate synthase [Listeria monocytogenes J2818]
          Length = 1070

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   +  R         VP    I
Sbjct: 90  LGGQTGLNMAMELSAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +    Q +   +      +   Q L+E+ 
Sbjct: 150 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNGQELIETVTSGLKLSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 640 INLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAITVATD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 760 DGVNVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSIQVKNTIVDYTTRLATGLNIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 816 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 853


>gi|194290080|ref|YP_002005987.1| carbamoyl phosphate synthase large subunit [Cupriavidus taiwanensis
           LMG 19424]
 gi|193223915|emb|CAQ69924.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Cupriavidus taiwanensis LMG
           19424]
          Length = 1082

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQARIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKQDNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +   E++R      +A+   G
Sbjct: 772 CDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +    V+ LE+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAIQQNNGVDTVYVLEVNPRASRT----VPYVSKATGMQLAKIAAR 875


>gi|291536829|emb|CBL09941.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           M50/1]
 gi|291539132|emb|CBL12243.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           XB6B4]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+               +  ++A  KPD     
Sbjct: 30  GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKIIAKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      LE   +    +       + D+   K  +   G P   S  +
Sbjct: 90  LGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +   + I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 HNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 82/256 (32%), Gaps = 13/256 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD A     G       +   L  + +    +       + D+    ++
Sbjct: 617 EDVESIVKLEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDEI 674

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +    +P      +       +  + +  P +++P       G+ +   D  I   +   
Sbjct: 675 LEKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDDEIEEFIGII 734

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +       +L+++Y+ G E+    + D +  +    +   +        S         +
Sbjct: 735 NRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGVHSGDSISVYPAPTIS 794

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +    +        QA+   G+    F+   +  +V+ +E+N +   T     P +
Sbjct: 795 DHVKET---IVEYTKRLAQALHVIGLINIQFI--AMDEQVYVIEVNPRSSRT----VPYI 845

Query: 278 AAYAGYSFRELLLWMV 293
           +   G    +L   ++
Sbjct: 846 SKVTGIPIVDLATKVI 861


>gi|240143309|ref|ZP_04741910.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           L1-82]
 gi|257204679|gb|EEV02964.1| carbamoyl-phosphate synthase, large subunit [Roseburia intestinalis
           L1-82]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+               +  ++A  KPD     
Sbjct: 30  GTQACRSLKEEGVEVVLVNSNPATIMTDKDIADQVYIEPLTVSVLEKIIAKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      LE   +    +       + D+   K  +   G P   S  +
Sbjct: 90  LGGQAGLNLGMELEEKGILEKYNVRLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +   + I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 HNVQDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNETELVEILTNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 82/256 (32%), Gaps = 13/256 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD A     G       +   L  + +    +       + D+    ++
Sbjct: 617 EDVESIVKLEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDEI 674

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +    +P      +       +  + +  P +++P       G+ +   D  I   +   
Sbjct: 675 LEKTQIPRAAGGTVYTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDDEIEEFIGII 734

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +       +L+++Y+ G E+    + D +  +    +   +        S         +
Sbjct: 735 NRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGVHSGDSISVYPAPTIS 794

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +    +        QA+   G+    F+   +  +V+ +E+N +   T     P +
Sbjct: 795 DHVKET---IVEYTKRLAQALHVIGLINIQFI--AMDEQVYVIEVNPRSSRT----VPYI 845

Query: 278 AAYAGYSFRELLLWMV 293
           +   G    +L   ++
Sbjct: 846 SKVTGIPIVDLATKVI 861


>gi|308270123|emb|CBX26735.1| Carbamoyl-phosphate synthase large chain [uncultured
           Desulfobacterium sp.]
          Length = 1073

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              V +++    PD    
Sbjct: 29  SGTQACKALKEDGYEVVLVNSNPATIMTDPDMAHRTYIEPVTPEIVAMIIEKEHPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  +      +LE   +    + I +   + D+   ++ ++  G+ +  S +
Sbjct: 89  TLGGQTGLNTAIEVAKMGVLEKFGVEMIGASIESINKAEDRDLFRKAMNRIGLRIPESGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                M  +    I  P +++P       G  V    + + +        +   Q+++E+
Sbjct: 149 ATNMEMAIKIVDTIGFPVIVRPSFTLGGTGGGVAYNFEDLEIIAKSGFDASLIGQIMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  K     
Sbjct: 209 SVLGWKEYELEVMRDKNDNVVIICSIENMDPMGIHTGDSITVAPAQTLTDAEYQKMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P++  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVDTGGSNVQFAVNPVNGDMIVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P        + ++   + +      +   +    +LI+++  + +E+  
Sbjct: 707 AESIGYPVILRPSFVLGGRAMKIVYNRKDLENFTRIAIEASPVHPVLIDKFLEEAVEVDV 766

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +       +S  ++  + P  I  DI  ++          + 
Sbjct: 767 DAISDGKATIICGIMEHIEAAG---VHSGDSACVLPPHSISKDIIDQITSATKAMATELK 823

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    +       K++ LE+N +   T     P ++   G  F +L   
Sbjct: 824 VIGLMNVQYAI--KGDKLYILEVNPRASRT----IPFVSKATGIPFAKLATK 869


>gi|292493677|ref|YP_003529116.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus
           halophilus Nc4]
 gi|291582272|gb|ADE16729.1| carbamoyl-phosphate synthase, large subunit [Nitrosococcus
           halophilus Nc4]
          Length = 1073

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L+  G++V  ++ +                      +V  +L   +PD    
Sbjct: 29  SGAQACKSLKAEGYRVILVNSNPATIMTDPEMADATYIEPITWETVARILEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   + ILE   +    +   A   + D+   +  +   G+ V  S +
Sbjct: 89  TMGGQTALNCALDLAREGILERYGVEMIGASEDAINKAEDRDLFRLAMQKIGLDVPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AYSLEEAQQVQRDLGFPIIIRPSFTLGGSGGGIAYNREEFVEICERGLDLSPNSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEFEMEVVRDCKDNCIIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAINPENGRLIIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/289 (10%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  +P        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIIALEQPKGVIIQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                        I  T    +  A   ++ +          P   +       +     
Sbjct: 647 LKLARALEAAGAPIIGTSPDSIDLAEDRERFQRLIERLGFKQPPNRTARTQEEALRLADE 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           +  P V++P        + ++     +   + ++ + ++   +L+++++ + IE+    +
Sbjct: 707 VGYPLVVRPSYVLGGRAMEIVYNMDELNRYMREAVTVSNDSPVLLDRFLDEAIEVDVDAI 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  +++   +   + +   G
Sbjct: 767 CDGERVIVGGIMEHIEQAG---VHSGDSACALPPFSLSAAVQDQLREQVYKMARELKVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F     +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQFAI--QANDIYVLEVNPRASRT----VPFVSKAIGVPLAKVAAR 866


>gi|270158807|ref|ZP_06187464.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae
           D-4968]
 gi|289166398|ref|YP_003456536.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae
           NSW150]
 gi|269990832|gb|EEZ97086.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae
           D-4968]
 gi|288859571|emb|CBJ13539.1| carbamoyl-phosphate synthase large subunit [Legionella longbeachae
           NSW150]
          Length = 1067

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVSWKEVARIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D + + IL    +    +   A   + D+ + +Q++   G+ +  S  
Sbjct: 89  TMGGQTALNCALDLVREGILAKYHVEMIGATREAIDRAEDREKFRQLMLKIGLDMPRSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 AHSMEEAIQVQARLGYPAIIRPSFTMGGSGGGIAYNREEFEEICMRGLELSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/263 (12%), Positives = 89/263 (33%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   KPD       G              ++I  T    + 
Sbjct: 611 DRLYFEPVTL---EDVLAIVEVEKPDGVIVHYGGQTPLKLARALEANGVKIIGTSPDAID 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +          P   ++      +   + I  P V++P        + V+ +
Sbjct: 668 RAEDRDRFQKLVTELKLHQPDNGTVRSEEEAIALANKIGYPLVVRPSYVLGGRAMEVVYQ 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   L  + + ++   +L++++  D IE+    + D    +    +   +       
Sbjct: 728 EEDLRHYLSHAVAVSNDSPVLLDKFLNDAIEVDIDAVCDGKEVLIGAVMEHIEQAGIHSG 787

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  + + + +++          +G  G+  + F        ++ LE+N +
Sbjct: 788 ---DSACTLPPFSLSVVVQQDLMEQMRQMALKLGVVGLINAQFAIQADD--IYVLEVNPR 842

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G+   ++
Sbjct: 843 ASRT----VPFVSKATGFPLAKI 861


>gi|291612552|ref|YP_003522709.1| urea carboxylase [Sideroxydans lithotrophicus ES-1]
 gi|291582664|gb|ADE10322.1| urea carboxylase [Sideroxydans lithotrophicus ES-1]
          Length = 1207

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 16/187 (8%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P +IK   GG  +G+ +      +             +      Y++  
Sbjct: 142 HAHAEASRIGYPVMIKSTAGGGGIGMRLCWSADELNEAFQSVERLARANFKDAGIYLEKY 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
                 +        +  V         ++  +       P   I  ++ + +   A   
Sbjct: 202 VEQARHIEVQLFGDGKGTVIALGERDCSVQRRNQKVIEETPAPNITPEVRQHLLETAVRL 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290
            +A+G +     +F+FD LS + ++LE+N +     G+T            G    +L+ 
Sbjct: 262 GKAVGYQSAGTVEFVFDALSGEFYFLEVNTRLQVEHGVTE--------EVTGV---DLVE 310

Query: 291 WMVEDAS 297
           WMV  A+
Sbjct: 311 WMVLQAA 317


>gi|254520421|ref|ZP_05132477.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA]
 gi|226914170|gb|EEH99371.1| carbamoyl-phosphate synthase [Clostridium sp. 7_2_43FAA]
          Length = 1068

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDSEVADKIYIEPLTVEFLEKVIDKERPDSLLT 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +         IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVDLYEAGILDKYNVKVIGTSIQSIKEGEDRELFRNMMNRINEPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  + + +  +   L      +   Q+L+E+
Sbjct: 149 ITDMEAGVTYATNIGYPVIVRPAYTLGGTGGGIAENEAELREILASGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 AINIINAVGIEGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 89/281 (31%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L+  G +   ++ +                       V  ++    PD       G
Sbjct: 580 CVKSLKKMGIETIIVNNNPETVSTDFNISDKLYFEPLTEEDVLNIIDKENPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++   T +  +  A   +K            P    +      ++ 
Sbjct: 640 QTAIKLANFLKEKGIKTLGTTADQIDMAEDREKFDDLLERLGIDRPKGKGVWNVEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +L+++Y+ G E+   
Sbjct: 700 ARRLGFPVLVRPSYVLGGQGMEITHDEEELKYYLKNAFDKDKKNPILVDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P   I  DI  +V         AIG
Sbjct: 760 AISDGEEILI----PGVMEHLERAGVHSGDSVTMYPSQNISSDIKDKVLDYTKKLALAIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
             G+    F+      +++ +E+N       P ++ VS  P
Sbjct: 816 INGMINIQFI--EFEGELYIIEVNPRASRTVPYISKVSKVP 854


>gi|330816263|ref|YP_004359968.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia gladioli
           BSR3]
 gi|327368656|gb|AEA60012.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia gladioli
           BSR3]
          Length = 1084

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHGEIAAITGGSGYPTVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFAINPNDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAAGVPIIGTSPDMIDAAEDRERFQKLLQELGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLARETVLELKRQTAAMARA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|313675049|ref|YP_004053045.1| d-alanine--d-alanine ligase [Marivirga tractuosa DSM 4126]
 gi|312941747|gb|ADR20937.1| D-alanine--D-alanine ligase [Marivirga tractuosa DSM 4126]
          Length = 894

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/141 (24%), Positives = 58/141 (41%), Gaps = 5/141 (3%)

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVT----EIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           + LLIE +++G E +C V+ D +               D + Y  KY    S  + P   
Sbjct: 303 NSLLIESFIEGKEFSCIVIQDENERPIALPPTEIRKGKDVFDYRSKYLPGISRKITPIDA 362

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           P DI ++++       +A+     +R D        KVF  + N   GM P S F   AA
Sbjct: 363 PQDIIEKIRSQCAALFKALQIDVYARIDGFITKE-GKVFLNDPNTTSGMLPSSFFFHQAA 421

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G +  + L +++  +   R
Sbjct: 422 EIGLNPSQFLSYIIRTSLQAR 442



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/214 (21%), Positives = 73/214 (34%), Gaps = 68/214 (31%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV---------------------- 38
           + +  GG S ERE+S + G+     L  + F    I +                      
Sbjct: 3   IGIFFGGQSREREISFAGGRTVYDNLNKSIFDAVPIFIDSKGHFVLLDWQYIYKGTIRDF 62

Query: 39  -------------------------DRSVGLVLAHLK-----------PDLAFNVLHGNF 62
                                    D     ++A +             D AF  LHG +
Sbjct: 63  YPPVNFLPKSDLPVQIYAESLKNLSDEDWDKLIAEVGQKINPSDFKKHIDFAFLALHGPY 122

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----------PVCPSIL 112
           GEDG +Q ILE   IP++ +GIL SA+ + K+  +Q +   G                  
Sbjct: 123 GEDGNIQGILEWNGIPFSGAGILPSAIGISKIAQRQFLQQAGFEGPKSRILNQNDWNHQP 182

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                 + +  +  P VIK    GSS+G+ ++ +
Sbjct: 183 HENIYQNLKKELGLPLVIKAPHQGSSIGVSILNE 216



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/230 (20%), Positives = 79/230 (34%), Gaps = 69/230 (30%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDA------------------------------- 29
           + V+MGG S+ER +S+ SG+     L  +                               
Sbjct: 476 VGVIMGGFSTERHISVESGRNIYEKLSSSEKYLPIPIFLSGNEDQHELYVLPINIMLKDN 535

Query: 30  ---------GFKVSQI---------DVDRS----VGLVLAHLK-------PDLAFNVLHG 60
                     ++V  I         ++         +VL  +         D+ F  LHG
Sbjct: 536 ADDIKDKIQNYEVHPIISQIKFESSEITEKYVGIENIVLKKISYHDLPDIIDVTFIALHG 595

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD- 119
             GEDG VQA LE L IPY  S + +S ++++K  + +++ + G+ V    LV       
Sbjct: 596 RPGEDGAVQAELEKLNIPYNGSDVESSKITINKYDTNEILKNAGISVADHRLVFENKWQS 655

Query: 120 --------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                    +  +S P + KP   G S  +  IK    +           
Sbjct: 656 NKEAEIAAIEEQLSYPLIAKPADDGCSSAVKKIKNKAELEAFAGMMFRPQ 705



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 3/61 (4%)

Query: 236 QAIGCRGISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           + +   G +R D           +   +E+N  PGMTP +      A  GY   + +  +
Sbjct: 820 EVLNITGYARIDAFVRVYEDLSVETIIIEVNSLPGMTPATCIFHQTAINGYKPYDFIDKI 879

Query: 293 V 293
           +
Sbjct: 880 L 880


>gi|297583970|ref|YP_003699750.1| carbamoyl-phosphate synthase large subunit [Bacillus
           selenitireducens MLS10]
 gi|297142427|gb|ADH99184.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           selenitireducens MLS10]
          Length = 1071

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVVLVNSNPATIMTDEETADRVYMEPLTVDFLSRIIRKERPDALLGT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + + +   + D+   R+        VP    +
Sbjct: 90  LGGQTGLNLAVELFESGILDEYGVKLLGTEVESIRKAEDREAFRALMNELGEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  ++   + +   +      +  +Q L+E+ 
Sbjct: 150 HSVEEARTFAESIGLPLIVRPAYTLGGTGGGIVNTMEELETIVYGGLKASPVNQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDKNDTAIVICNMENIDPVGVHTGDSIVMAPSQTLTDRDYQRLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +  AGY   +L   
Sbjct: 269 LAIIRALEIEGGCNVQLAIDPDSDQYYIIEVN--PRVSRSS--ALASKAAGYPIAKLSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 97/285 (34%), Gaps = 30/285 (10%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
            A+ +AG++   I+                         V  V+ H KP+       G  
Sbjct: 578 KAIREAGYEAIVINNNPETVSTDFEVSDKLYFEPLTTEDVMHVIEHEKPEGVLVQFGGQT 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     + + + I  T    + +  + +   ++       +P   + +     M    
Sbjct: 638 AINLADSLVKQGVRILGTSLEEMDACENRNLFEARLHDIGLPMPEGKTAVSVPEAMAIAE 697

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +  +   + ++ + N    +LI++Y+ G E+   V+
Sbjct: 698 DIGYPVLVRPSYVLGGRAMEIVHTESELSHYMQRAVNVNKKHPVLIDEYITGTEIEVDVV 757

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +     P K+  ++ + + + A    +    +G
Sbjct: 758 SDGETAVVPGIMEHIERAG---VHSGDSIAVYPPQKLSDEMKETITQSAIRLAKGFQIKG 814

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    F+      ++  +E+N +   T     P ++   G +   
Sbjct: 815 LMNIQFVI--QRDRLLVIEVNPRSSRT----VPFISKITGMNMAN 853


>gi|1168772|sp|P46537|CARB_BACCL RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|312443|emb|CAA51739.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) [Bacillus
           caldolyticus]
          Length = 1065

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 87/293 (29%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG++   I+ +                       V  V+   +P        G
Sbjct: 577 CVWAIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPIGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     + +  T    L  A   DK            P   + +     +  
Sbjct: 637 QTAINLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   +  +   N    +L+++Y+ G E+   
Sbjct: 697 AEEIGYPVLVRPSYVLGGRAMEIVYNRGELLHYMEHAVRVNPQHPVLVDRYITGKEVEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +       +S  +     P  +  ++  ++        + +  
Sbjct: 757 AIADGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSAEVIDKIADYTIRLARGLHI 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ LE+N +   T     P ++   G     L    +
Sbjct: 814 VGLLNIQFVVSGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAI 860


>gi|332701280|ref|ZP_08421368.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           africanus str. Walvis Bay]
 gi|332551429|gb|EGJ48473.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           africanus str. Walvis Bay]
          Length = 1140

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   +PD    
Sbjct: 92  SGTQAVKALKEEGYEVVLVNSNPATIMTDPELADRTYIEPITPEVVAKIIEKERPDALLP 151

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G         V     L +      G    A+   + R +   +   +    P    
Sbjct: 152 TLGGQTGLNTALAVAESGVLDQFGVELIGASQVAIRKAESRQEFREAMARIGLKVPESGI 211

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I+ P +++P       G  V    + +     +    +   ++++EQ
Sbjct: 212 ARNMDDVREWGQKIAFPIIVRPAFTLGGTGGGVAYNMEDLEAIAGRGLDASVKSEVMLEQ 271

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   +     I     +     +      +          +  K     
Sbjct: 272 SVLGWKEYELEVMCDTAGNGVIICSIENLDPMGVHTGDSITVAPAQTLTDDEYQKMRDAA 331

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P    +  +E+N  P ++  S     +   G+   ++  
Sbjct: 332 LAIMREIGVSTGGSNVQFAVNPADGDMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 387

Query: 291 WM 292
            +
Sbjct: 388 KL 389



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 31/295 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   +         D D              V  ++   +P+       G   
Sbjct: 655 ALKELGVESIMVNSNPETVSTDYDTSTRLYFEPLTLEDVLNIIDLEQPEGVVVQFGGQTP 714

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V  +   ++I  T    +  A   ++ ++         P   +       +     
Sbjct: 715 LNLAVPLLRNGVKILGTSPDSIDRAEDRERFQALLNKLDLKQPPNATAFSEGEALIKAQK 774

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + +I   + +     +         +L++Q+++  IE+    +
Sbjct: 775 IGYPVVVRPSYVLGGRAMAIIYSPEELSAYFKKEVLVAPEHPILVDQFLENAIEVDVDAL 834

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +       +   +           ++  + P  I  ++  E++R      Q +G  G
Sbjct: 835 SDGTDTYVAGIMEHIEEAGIHSG---DSACVIPPHTISKELQAEIERQTIALAQELGVVG 891

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +    F        VF LE+N +   T     P ++   G     L   ++  AS
Sbjct: 892 LMNIQFAI--KDDVVFILEVNPRASRTA----PFVSKATGVPLPRLATQIMLGAS 940


>gi|294616600|ref|ZP_06696376.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1636]
 gi|294617884|ref|ZP_06697493.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1679]
 gi|291590550|gb|EFF22283.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1636]
 gi|291595829|gb|EFF27113.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           E1679]
          Length = 1061

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|283458036|ref|YP_003362646.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa
           DY-18]
 gi|283134061|dbj|BAI64826.1| carbamoyl-phosphate synthase large subunit [Rothia mucilaginosa
           DY-18]
          Length = 1106

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       +  ++   KPD    
Sbjct: 29  SGTQALRVLKEEGVRVILVNSNPATIMTDPEFADATYIEPITPEVIEKIIEKEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +       + +L    +    + I A  L  D+   K VV   G     S+ 
Sbjct: 89  TLGGQTALNAAISLDERGVLAKYNVELIGANIEAINLGEDREAFKGVVERAGGESARSVI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   ++ +         ++   ++L+E+
Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M   + D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDTNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREFQKLRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAIDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|261207809|ref|ZP_05922494.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6]
 gi|289566261|ref|ZP_06446693.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           D344SRF]
 gi|260078192|gb|EEW65898.1| carbamoyl-phosphate synthase [Enterococcus faecium TC 6]
 gi|289161968|gb|EFD09836.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecium
           D344SRF]
          Length = 1061

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEVADQVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELAASGILEELNIELLGTKLSAIDQAEDRDLFKQLMKELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ + +      S +   Q LIE+ 
Sbjct: 150 NTVEEAVDFANKIGYPVIVRPAFTLGGTGGGMCENEEELRIVSENGLSLSPATQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDHEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 639 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVIIAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NEVYVIEVNPRASRT----VPFLSKVTGIPMAQIATKAI 860


>gi|228916524|ref|ZP_04080090.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
 gi|228843103|gb|EEM88185.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pulsiensis BGSC 4CC1]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|228954163|ref|ZP_04116191.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
 gi|228805483|gb|EEM52074.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar kurstaki str. T03a001]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|228987031|ref|ZP_04147156.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
 gi|228772625|gb|EEM21066.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar tochigiensis BGSC 4Y1]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229071386|ref|ZP_04204608.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185]
 gi|228711677|gb|EEL63630.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus F65185]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|228928935|ref|ZP_04091967.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
 gi|228947606|ref|ZP_04109896.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|229123400|ref|ZP_04252604.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201]
 gi|228660176|gb|EEL15812.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus 95/8201]
 gi|228812126|gb|EEM58457.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar monterrey BGSC 4AJ1]
 gi|228830742|gb|EEM76347.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pondicheriensis BGSC 4BA1]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93
             V  ++   +PD     L G  G +  V+           +EI  T    +  A   D 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            R+     +   P    I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229140535|ref|ZP_04269090.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST26]
 gi|228643096|gb|EEK99372.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST26]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|228960104|ref|ZP_04121768.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pakistani str. T13001]
 gi|229047571|ref|ZP_04193161.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676]
 gi|229111356|ref|ZP_04240909.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15]
 gi|229129164|ref|ZP_04258137.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-Cer4]
 gi|229146458|ref|ZP_04274829.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST24]
 gi|228637091|gb|EEK93550.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-ST24]
 gi|228654401|gb|EEL10266.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus
           BDRD-Cer4]
 gi|228672132|gb|EEL27423.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-15]
 gi|228723818|gb|EEL75173.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus AH676]
 gi|228799620|gb|EEM46573.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar pakistani str. T13001]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229081139|ref|ZP_04213649.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2]
 gi|229152084|ref|ZP_04280279.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550]
 gi|228631433|gb|EEK88067.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus m1550]
 gi|228702183|gb|EEL54659.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-2]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229157465|ref|ZP_04285542.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           4342]
 gi|228625915|gb|EEK82665.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus ATCC
           4342]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +LE   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229186127|ref|ZP_04313296.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1]
 gi|228597303|gb|EEK54954.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus BGSC 6E1]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93
             V  ++   +PD     L G  G +  V+           +EI  T    +  A   D 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLEECGVEILGTKLSAIEQAEDRDL 77

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            R+     +   P    I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|282899734|ref|ZP_06307697.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Cylindrospermopsis raciborskii CS-505]
 gi|281195349|gb|EFA70283.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Cylindrospermopsis raciborskii CS-505]
          Length = 1083

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+      +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVNVCPSGT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +               P +I+P       G  +    +   L        +   Q+LI+
Sbjct: 149 ASSLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFELMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327


>gi|169343276|ref|ZP_02864287.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens C str. JGS1495]
 gi|169298574|gb|EDS80655.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens C str. JGS1495]
          Length = 1067

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I+ +                       V  ++    PD       G   
Sbjct: 583 ALRKQGIETIVINNNPETVSTDFSISDKLYFEPLTEEDVLNIIDKENPDGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T S  +  A   ++        +   P    +      ++    
Sbjct: 643 IKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLERLNIARPKGKGVWSLEEGLEEARR 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFEKDSKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I   I ++V         +IG +G
Sbjct: 763 DGEDVLV----PGIMEHLERAGVHSGDSITMYPAQNISGKIKEDVLDYTKKLALSIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      K++ +E+N +   T     P ++  +G    ++   +
Sbjct: 819 MINIQFI--EFEGKLYVIEVNPRASRT----VPYISKVSGVPIVDIATRI 862



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|238026779|ref|YP_002911010.1| carbamoyl phosphate synthase large subunit [Burkholderia glumae
           BGR1]
 gi|237875973|gb|ACR28306.1| Carbamoyl-phosphate synthase, large subunit [Burkholderia glumae
           BGR1]
          Length = 1084

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 87/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+   + R K   +   + +  +    
Sbjct: 89  TMGGQTALNCALDLHHHGVLEKYDVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 115 RFTMDSQHLIS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
             +M+    +             P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVQAEIAAATGGSGYPTVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 43.7 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAAGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAESEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAQTVAELKRQTGAMARA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|149195024|ref|ZP_01872117.1| carbamoyl-phosphate synthase large subunit [Caminibacter
           mediatlanticus TB-2]
 gi|149134945|gb|EDM23428.1| carbamoyl-phosphate synthase large subunit [Caminibacter
           mediatlanticus TB-2]
          Length = 1090

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  ++ +                       +  ++   K D    
Sbjct: 29  SGVQAAKTLKSLGYRVVLVNSNPATIMTDPEFADATYIEPITPEVISKIIKKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +L+ +E    +   +      +  +         +P   +  
Sbjct: 89  TMGGQTALNVAMEMYDKGMLKGVEFLGANPEAIKKGEDREAFKKAMEKIGMDLPKSATAN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P +++       LG  V                 +  +++ I + +
Sbjct: 149 NLEDAIKIVEEIGFPVIVRAAFTLGGLGSGVAYNMDEFKELAKTGIESSPINEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKEDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 39.9 bits (91), Expect = 0.46,   Method: Composition-based stats.
 Identities = 33/263 (12%), Positives = 83/263 (31%), Gaps = 12/263 (4%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            V   +      V  V+    PD       G               +I  T + ++ +A 
Sbjct: 607 DVLYFEPINFERVRNVIDLESPDGVIVQFGGQTPLKLAKPLTSIGAKIIGTSAKVIDTAE 666

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             +K            P   +             I  P +++P        + ++  +  
Sbjct: 667 DREKFAEFIKDLGLNQPENGTAFTKEEAYKIADKIGYPVLVRPSYVLGGRAMRIVYNENE 726

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +   + ++ S ++   +LI++++D  IEL    + D         +   +          
Sbjct: 727 LKEYMDEAVSVSNESPVLIDKFLDRAIELDVDAISDTKNVYIGGIMQHIEEAGIHSG--- 783

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            ++  +    I  +  KE++ +       +G +G+    +       K++ +E+N +   
Sbjct: 784 DSACSLPNVSISEEKIKEIENVTKQIALKLGVKGLLNIQYAL--HKDKLYLIEVNPRASR 841

Query: 269 TPVSIFPEMAAYAGYSFRELLLW 291
           T     P ++   G    ++   
Sbjct: 842 T----VPFVSKATGLPMAKVATR 860


>gi|325978522|ref|YP_004288238.1| carbamoyl phosphate synthase large subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|325178450|emb|CBZ48494.1| carbamoyl phosphate synthase large subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 1059

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|306831618|ref|ZP_07464776.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|304426403|gb|EFM29517.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
          Length = 1059

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|229162822|ref|ZP_04290779.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803]
 gi|228620704|gb|EEK77573.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus R309803]
          Length = 1018

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 84/260 (32%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   +PD     L G  G + +   + +   +      IL + LS  +    + 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 100 VS-------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +        +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQDLNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|295399740|ref|ZP_06809721.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978143|gb|EFG53740.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 1064

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +L    +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELANAGVLAECGVEILGTKLDAIEKAEDREQFRALMNELGEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICTNEKELTDIVSTGLKLSPAHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  V+   KP        G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTMEDVMHVIDLEKPVGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    L  A   DK            P   +       +     
Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQALSDLRIPKPQGKTAFSVEEAVRIAKE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ +++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEKELLHYMEHAVKVNPQHPVLIDRYLIGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +I +++        + +   G+
Sbjct: 760 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQTLTEEIKRKIIDYTMKLARGLRIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F+      +V+ LE+N +   T     P ++   G     +   ++  A
Sbjct: 817 LNIQFVM--YQDEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863


>gi|312111741|ref|YP_003990057.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
 gi|311216842|gb|ADP75446.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 1064

 Score = 63.0 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTFEFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +L    +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELANAGVLAECGVEILGTKLDAIEKAEDREQFRALMNELGEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLEEAYAFVEKVGYPVIVRPAFTLGGTGGGICTNEKELTDIVSTGLKLSPAHQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LRIIRALGIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 92/293 (31%), Gaps = 30/293 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  V+   KP        G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTMEDVMHVIDLEKPVGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    L  A   DK            P   +       +     
Sbjct: 640 INLAAELAARGVRILGTSLEDLDRAEDRDKFEQALSDLRIPKPQGKTAFSVEEAVRIAKE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ +++ +   +  +   N    +LI +Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYQEKELLHYMEHAVKVNPQHPVLINRYLIGKEIEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +I +++        + +   G+
Sbjct: 760 DGETVLIPGIMEHIERAG---VHSGDSIAVYPPQTLTEEIKRKIIDYTMKLARGLRIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F+      +V+ LE+N +   T     P ++   G     +   ++  A
Sbjct: 817 LNIQFVM--YQDEVYVLEVNPRSSRT----VPFLSKITGVPMANIATKVILGA 863


>gi|310287765|ref|YP_003939023.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           bifidum S17]
 gi|311064651|ref|YP_003971376.1| carbamoyl-phosphate synthase large chain [Bifidobacterium bifidum
           PRL2010]
 gi|309251701|gb|ADO53449.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           bifidum S17]
 gi|310866970|gb|ADP36339.1| CarB Carbamoyl-phosphate synthase large chain [Bifidobacterium
           bifidum PRL2010]
          Length = 1126

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMSLGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVDEAGAESARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +        +  P V++P      LG  +   ++ +         ++  D++L+E+
Sbjct: 149 AHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLHYSPTDEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|33240347|ref|NP_875289.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
 gi|33237874|gb|AAP99941.1| Carbamoylphosphate synthase large subunit [Prochlorococcus marinus
           subsp. marinus str. CCMP1375]
          Length = 1108

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 99/315 (31%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL+  GF+V  I         D                +  ++   KPD    
Sbjct: 29  SGTQACKALKKEGFEVVLINSNPASIMTDPEMADRTYIEPLTTEVITKIIELEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      IL   +I    + + +   + D+   K  +   GV VCPS +
Sbjct: 89  TMGGQTALNAAVDLAEKGILRKFKIELIGADLESINKAEDRQLFKNSMEKIGVNVCPSGI 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                       ++ S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ACNIEEAINVGSNIESFPRIIRPAFTLGGSGGGIAYNQEEFISICKSGLEASPASQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   ++D   I     +     +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDNVDNVVIICSIENIDPMGIHTGDSITIAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIKIIREIGVETGGSNVQFAVNPVDGEVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLAIGYRLDEILND 339


>gi|172057952|ref|YP_001814412.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
 gi|226700928|sp|B1YIR9|CARB_EXIS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|171990473|gb|ACB61395.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
          Length = 1070

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  +         D                V  ++   +PD     
Sbjct: 30  GTQACQALKEEGYEVVLVNSNPATIMTDPTVADRVYIEPLQAEFVARIIRKERPDALLAT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+     +   Y           +  A   D  R        GVP    +
Sbjct: 90  LGGQTGLNLAVELDRLGVLAEYGVELLGTKLTAIEEAEDRDLFRKLMFKLGHGVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G  + +        +      +   Q+L+E+ 
Sbjct: 150 HTVEEAEQFCAKIGLPIIIRPAYTLGGTGGGIAETMDEFIRIVEGGLKASPATQVLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G++     +   + +   I     +F    +                 D Y+ ++ ++
Sbjct: 210 IAGMKEVEFEVMRDATNQAIIVCAMENFDPVGVHTGDSIVFAPTQTLSDRD-YQMMRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G     F  DP+S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LDIIRVLGIEGGCNIQFALDPVSFTYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 94/292 (32%), Gaps = 30/292 (10%)

Query: 23  ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61
             A+ +AG++   ++                         V  V+ + +P        G 
Sbjct: 578 IQAIREAGYEAIIVNNNPETVSTDFSISDRLYFEPLTTEDVLEVIRNEQPIGVIVQFGGQ 637

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +       E ++I  T    L  A    +  +         P   + +       + 
Sbjct: 638 TAINLAESLEAEGVKILGTSLEDLDRAEDRKQFEAALTQLDIPQPPGKTAVTVTEATAAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P        + ++  +Q +   +  +   +    +L+++Y+ G+EL    
Sbjct: 698 SELGYPVLVRPSYVLGGRAMEIVYGEQELEHYMKHAVIASPERPVLVDRYLTGMELEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +  V    +   +           +     P ++P  I + +        +A   +
Sbjct: 758 ICDGTDVVIPGIMEHIERAGIHSG---DSIGVYPPQRVPQAIKELIVDYTTRIAKAFRIK 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+F     +++ LE+N +   T     P ++   G     L   ++
Sbjct: 815 GLLNIQFVF--ADGELYVLEVNPRASRT----VPFISKVTGLPVARLATNVI 860


>gi|83273647|ref|XP_729490.1| acetyl-CoA carboxylase 1 precursor [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23487445|gb|EAA21055.1| acetyl-CoA carboxylase 1 precursor-related [Plasmodium yoelii
           yoelii]
          Length = 2911

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/195 (15%), Positives = 67/195 (34%), Gaps = 12/195 (6%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +    +I      +     I  P +IK  +GG   GI  ++ +  I     Q  +   
Sbjct: 579 QDIYNKSTIHSLEECIRECKRIGYPVMIKASQGGGGKGIRKVENENEIKKYYEQVQNELP 638

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              + + +    +     +      D+       S       +          P+ +P  
Sbjct: 639 NSPIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSIVPPH 695

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIF 274
            ++E+++ +    + I  RG    ++L+D ++ K ++LE+N       P   G+T  +I 
Sbjct: 696 TFREMEKASIRLTKMIKYRGAGTIEYLYDQVNNKYYFLELNTRLQVEHPVSEGITDTNIV 755

Query: 275 PEMAA-YAGYSFREL 288
                   G   + +
Sbjct: 756 AIQLQVAMGIPLQNI 770


>gi|300741565|ref|ZP_07071586.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           M567]
 gi|300380750|gb|EFJ77312.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           M567]
          Length = 1114

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +       Q  L   ++    + I A  L  D+   K VV   G     SI 
Sbjct: 89  TLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVERAGGESARSII 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   ++ +         ++   ++L+E+
Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAVDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|311113658|ref|YP_003984880.1| carbamoyl-phosphate synthase large subunit [Rothia dentocariosa
           ATCC 17931]
 gi|310945152|gb|ADP41446.1| carbamoyl-phosphate synthase, large subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 1114

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQALRVLKEEGVRVVLVNSNPATIMTDPEFADATYIEPITPEVIAKIIEKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +       Q  L   ++    + I A  L  D+   K VV   G     SI 
Sbjct: 89  TLGGQTALNAAIALDKQGTLREYDVELIGANIEAINLGEDREAFKGVVERAGGESARSII 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   ++ +         ++   ++L+E+
Sbjct: 149 VHSMPEALEAAKELGYPMVVRPSFTMGGLGSGMAYNEEDLYRIAGAGIQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAVDPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|149908009|ref|ZP_01896677.1| D-alanylalanine synthetase [Moritella sp. PE36]
 gi|149809015|gb|EDM68946.1| D-alanylalanine synthetase [Moritella sp. PE36]
          Length = 384

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 57/306 (18%), Positives = 109/306 (35%), Gaps = 38/306 (12%)

Query: 22  CASALEDAGFKVSQIDV---DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ--AILELLE 76
            A AL ++GF+   IDV   +  +   L  L  DL      G  G D +    ++LE+L 
Sbjct: 54  IADALRESGFQ--HIDVLPENMDLPQRLKALNIDLVITNSGGLQGFDSMCHLPSMLEMLG 111

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM-----------DSQHLIS 125
           +PY     + + L  +K   K  + + G+P  P I V                       
Sbjct: 112 VPYVGHSPMTAGLLDNKHLFKHEIKAAGIPTAPFITVGLGECITDAVNKEALDQIDADFG 171

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC------ 179
             +++KP+ G +S+ +  +     +   +    +    + ++IE Y+ G E         
Sbjct: 172 GRFIVKPVSGRASIHVYPVFDRADLAGKVKIVQAAT-NNIVMIEPYLSGREFVVAVAGSV 230

Query: 180 -------GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
                    +           V   D   +        ++  L      ++ + +  L  
Sbjct: 231 IFKNDKLNQLDSPFAFSVTERVLADDEPIFTSMDVKPITSDRLLKVDEPELRQSLIDLGN 290

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-----TPVSIFPEMAAYAGYSFRE 287
             +Q +G   + R D   D    K++ LE N +P +       +SI        G S+++
Sbjct: 291 KIYQQLGLGTLVRVDLRMDCK-GKLYVLEANPKPDLKRPEGDKLSIVCHDIHNEGMSYQD 349

Query: 288 LLLWMV 293
           L+  +V
Sbjct: 350 LIQSLV 355


>gi|114049526|emb|CAJ75872.1| PyrAb1 protein [Lactobacillus plantarum subsp. plantarum]
          Length = 1058

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQKAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTIEDVLNVIELEKPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    +  A   D+        +   P   +       +    
Sbjct: 639 AINLAKPLADHGIKILGTSVADVNRAEDRDEFDKVIKALAIPQPAGDTASDEATALAIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++KK   +   +  +   +H   +L++ Y+ G E     +
Sbjct: 699 KLGYPVLVRPSYVLGGRAMEIVKKRTDLDYYMHNAVKVSHDHPVLVDSYLVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++         A+ C G
Sbjct: 759 CDGQTVLIPGIMEHIERAG---VHSGDSMAVYPPQSLSAAVQAQIVDYTEKLAIALNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++    +
Sbjct: 816 VMNIQFVI--HDDQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATRAI 860



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++  ++V  ++ +                       V  +L    PD    
Sbjct: 29  SGTQACLALKELDYEVVLVNSNPATIMTDKEIADQVYLEPITLEFVSQILRKEHPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ ++        VP    
Sbjct: 89  TLGGQQGLNMAMELSKSGILDELHIELLGTKLSAIDQAEDREQFKALMEELGEPVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + +  Q +        + +   Q+LIEQ
Sbjct: 149 ARTVDEALAFAEQAGYPVIVRPAFTMGGTGGGIAETPQQLHDITENGLALSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +          +      ++   ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNAMVVCNMENFDPVGIHTGDSIVYAPVQTLADREVQL-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGCNVQLALDPNSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|119485029|ref|ZP_01619414.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lyngbya sp. PCC 8106]
 gi|119457257|gb|EAW38382.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lyngbya sp. PCC 8106]
          Length = 1079

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETAERTYIEPLVPEIVEKVIEKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +         +LE   +    + + A  ++ D+   KQ +   GV  CPS  
Sbjct: 89  TMGGQTALNLAVALAKNGVLEKYGVELIGAKLEAIEMAEDRQLFKQAMERIGVACCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     +Q + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 VSNMDEARTVAQQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELASGGLDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  +  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SIKIIREIGVETGGSNIQFAINPVNGDMIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/295 (10%), Positives = 88/295 (29%), Gaps = 39/295 (13%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G++   ++                         V  ++   KP        G   
Sbjct: 586 ALRANGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVINIIEAEKPVGIIIQFGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSG-------ILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
               +     L      +           +   + D+ R ++++    +    + +   F
Sbjct: 646 LKLAIPLQKYLEANAEKNPDLKIWGTSPDSIDAAEDRERFEKILRQLNIQQAENGMARNF 705

Query: 117 TM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P V++P        + ++  D+ +   ++ +        +L++++++ 
Sbjct: 706 EQSLQIARRIGYPVVVRPSYVLGGRAMEIVYSDEDLERYMMFAVQIEPDHPILVDKFLEN 765

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFL 233
                      +    E+ +     +  +    S +S   +P +       + ++R    
Sbjct: 766 AIEVDV--DAIADQTGEVVIGGIMEHIEQAGVHSGDSACSIPYQTLPKTAVETIRRQTIE 823

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +A+   G+    F       +V+ LE N +   T     P ++   G    ++
Sbjct: 824 LAKALKVVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKM 872


>gi|186685843|ref|YP_001869039.1| carbamoyl phosphate synthase large subunit [Nostoc punctiforme PCC
           73102]
 gi|186468295|gb|ACC84096.1| carbamoyl-phosphate synthase, large subunit [Nostoc punctiforme PCC
           73102]
          Length = 1087

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVEKVIEKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+    + ++  GV VCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGVLEKYGVELIGAKLPAIEKAEDRKLFGEAMARIGVAVCPSDT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                            P +I+P       G  +    +            +   Q+LI+
Sbjct: 149 AETLEEAKAVARQIGSYPLIIRPAFTMGGSGGGIAYNQEEFEEMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +PL+  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPLNGDVVVIEMN--PRVSRSS--ALSSKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327


>gi|295396137|ref|ZP_06806320.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294971078|gb|EFG46970.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 1089

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVILVNSNPATIMTDPDIADATYVEPIDPEVIEAIIAKERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G        +     +LE   +    + + A     ++ + K VV +C   V     
Sbjct: 89  TLGGQTALNAAINLHKAGVLEKYGVELIGADVDAIERGENRQQFKGVVETCGAEVARSRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   +  +          +  +++L+E+
Sbjct: 149 AHTMDECLEAAQELGYPMVVRPSFTMGGLGSGMAYNEDDLRRIAGDGLHDSLTNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +F    +      +         ++  K     
Sbjct: 209 SILGWKEYELELMRDRNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDVEFQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREVGVDTGGCNIQFAVNPDNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|313892194|ref|ZP_07825787.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E]
 gi|313119332|gb|EFR42531.1| pyruvate carboxylase [Dialister microaerophilus UPII 345-E]
          Length = 1142

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 76/286 (26%), Gaps = 44/286 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48
                 A ++ G +   +                                   +  +   
Sbjct: 16  AIRVFRACKELGIRTVAVYSKEDVLSLHRNRADEAYLIGEGDEPVAAYLDIEEIIRICKE 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D      +G   E+  +        I +         +  DK+ +++      +P+ 
Sbjct: 76  HNVDAVHPG-YGFLAENVNLARRCHEEGIIFIGPREEHLVMFGDKVNAREQAKLADIPMI 134

Query: 109 PSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P             +       P +IK + GG   G+  +     +      + +     
Sbjct: 135 PGTHGAVKSFDDVKEFAEKYGFPIMIKAVNGGGGRGMRSVDCMDDLVSAYSMAKTEAKLA 194

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   +       V+   +   ++GD   ++  +            K   +     LP   
Sbjct: 195 FGDDEVYAERCVVNPKHIEVQIIGDGKGNIIHLFERDCSIQRRHQKVIEMAPAWSLPL-- 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ K +   A    + +        +FL D   +  +++E+N +
Sbjct: 253 --ELRKRICDAAVKLMKNVKYLNAGTVEFLVDENQKDFYFIEVNPR 296


>gi|255535159|ref|YP_003095530.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae
           bacterium 3519-10]
 gi|255341355|gb|ACU07468.1| Carbamoyl-phosphate synthase large chain [Flavobacteriaceae
           bacterium 3519-10]
          Length = 1060

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/279 (11%), Positives = 88/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++ G++   I+ +                       V  ++   KP        G   
Sbjct: 581 AIKELGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + +K  +         P+  +       +   + 
Sbjct: 641 INLADKLAAHGVQILGTSLEDLDRAENRNKFEAALQEMGIPQPLGKTCFTKEEALIIANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  D+ +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYDDKDLSYYMTNAVKESSEHPILIDRYLTGREVEVDAIS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  I     + +        + +   G+
Sbjct: 761 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNITPKQIETLVDYTERLAKGLNVIGL 817

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++       V+ +E+N       P ++ ++  P  
Sbjct: 818 MNIQYVL--SDGNVYVIEVNPRSSRTVPFLSKITEIPMA 854



 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     +L + G+KV  I+ + +                     V  ++   +PD     
Sbjct: 29  GTQACLSLREEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPT 88

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +E+  T    +  A   D  R      +  VP    +
Sbjct: 89  LGGQTGLNMAVELQNSGILDECKVEVLGTKLSAINQAEDRDLFRELMRELNEPVPDSDIV 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P +++P       G  +   D+ +         ++   Q LIE+ 
Sbjct: 149 NTVQGALEFAERIGYPVIVRPAFTMGGTGGGIAHNDEELKEIASFGLKYSPVTQCLIEKS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 209 IAG-FKEIEYEVMRDKNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQMLRNSS 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 268 LKIIRALGIEGGCNVQLALDPHSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 323

Query: 292 M 292
           +
Sbjct: 324 I 324


>gi|114330475|ref|YP_746697.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas eutropha
           C91]
 gi|114307489|gb|ABI58732.1| carbamoyl-phosphate synthase large subunit [Nitrosomonas eutropha
           C91]
          Length = 1065

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  V+   +PD    
Sbjct: 29  SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQVVEKVIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D +   +LE   +    +   A  ++ D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDMAEDREKFKQAMTRIGLQSARSAM 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M +Q +I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEAMRAQAVIGYPVIIRPSFTLGGSGGGIAYNREEFVEICERGLEASPTRELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVIGWKEFEMEVIRDKQDNCIIVCAIENVDPMGVHTGDSITVAPAQTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAINPENGNMLVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +  ++   I         D D              V  ++A  KP        G   
Sbjct: 582 ALREDQYETIMINCNPETVSTDYDVSDRLYFEPLTLEDVLEIVAVEKPVGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T   ++  A   ++ ++         P   +       + +   
Sbjct: 642 LKLARELEENEVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPPNFTARTPETALAAADN 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++ Y  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEARDLERYMQEAVKVSNDSPVLLDHYLNNAIEVDVDAI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  E++R      +A+  RG
Sbjct: 762 FDGETVLVGGIMEHIEQAG---VHSGDSACSLPPFSLSTSLQDELRRQTGAMARALNVRG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNIQFAI--QDNVVYVLEVNPRASRT----VPFVSKATGLQLAKIAAR 861


>gi|299136670|ref|ZP_07029853.1| urea carboxylase [Acidobacterium sp. MP5ACTX8]
 gi|298601185|gb|EFI57340.1| urea carboxylase [Acidobacterium sp. MP5ACTX8]
          Length = 1198

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 16/185 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              L+  P ++K   GG  +G+ V    + +          +  +      Y++      
Sbjct: 146 QAELLKYPVMLKSSGGGGGIGMRVCHSAEQLGEAYESVLRLSRANFGDSGVYLEKFVSRA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +        +  V          +          PA    +   ++++  A L  +A+
Sbjct: 206 RHIEVQIFGDGKGNVLALGERDCSAQRRHQKVLEETPAPGLTEATREQLRSAAILLAKAV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                   +F++D  + + ++LE+N +     G+T            G    +L+ WMV 
Sbjct: 266 NYASAGTVEFIYDDDTNEFYFLEVNTRLQVEHGVTE--------EVTGI---DLVEWMVR 314

Query: 295 DASCL 299
            AS  
Sbjct: 315 QASGD 319


>gi|224283412|ref|ZP_03646734.1| Carbamoylphosphate synthase large subunit [Bifidobacterium bifidum
           NCIMB 41171]
 gi|313140567|ref|ZP_07802760.1| CarB [Bifidobacterium bifidum NCIMB 41171]
 gi|313133077|gb|EFR50694.1| CarB [Bifidobacterium bifidum NCIMB 41171]
          Length = 1126

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVDEAGAESARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +        +  P V++P      LG  +   ++ +         ++  D++L+E+
Sbjct: 149 AHSMKEVDAVAAELGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGLHYSPTDEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|167918463|ref|ZP_02505554.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei BCC215]
          Length = 1084

 Score = 63.0 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPVVIRPSFTLGGSGGGIAYNREEFEGICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|288905532|ref|YP_003430754.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus UCN34]
 gi|288732258|emb|CBI13825.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           gallolyticus UCN34]
          Length = 1059

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVAILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMSMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|330987044|gb|EGH85147.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|330963964|gb|EGH64224.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAR 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|330958060|gb|EGH58320.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|298488445|ref|ZP_07006476.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
 gi|298157070|gb|EFH98159.1| Carbamoyl-phosphate synthase large chain [Pseudomonas savastanoi
           pv. savastanoi NCPPB 3335]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|289624591|ref|ZP_06457545.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646950|ref|ZP_06478293.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|330868235|gb|EGH02944.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aesculi str. 0893_23]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|257482272|ref|ZP_05636313.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331011487|gb|EGH91543.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|237798552|ref|ZP_04587013.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331021405|gb|EGI01462.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|71733927|ref|YP_276322.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|71554480|gb|AAZ33691.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|28871635|ref|NP_794254.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213966658|ref|ZP_03394809.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato T1]
 gi|301383168|ref|ZP_07231586.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato Max13]
 gi|302063397|ref|ZP_07254938.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato K40]
 gi|302133770|ref|ZP_07259760.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|38257463|sp|Q87WP4|CARB_PSESM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|28854887|gb|AAO57949.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213928508|gb|EEB62052.1| carbamoyl-phosphate synthase, large subunit [Pseudomonas syringae
           pv. tomato T1]
          Length = 1073

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|21535791|emb|CAC85727.1| putative carbamoyl phosphate synthase large subunit [Nicotiana
           tabacum]
          Length = 1203

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  VL   +PD    
Sbjct: 125 SGTQACKALREEGYEVILINSNPATIMTDPEMADRTYIEPMTPELVEQVLERERPDALLP 184

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +L+   +    + + A   + D+   KQ + + G+   PS +
Sbjct: 185 TMGGQTALNLAVXLAESGVLDXYGVELIGAKLGAIKKAEDRDLFKQAMKNIGIKTPPSGI 244

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N      +    +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 245 GNTLEECIEIAGEIGEFPLIIRPAFTLGGTGGGIAYNREEFEAICKSGLAASLTSQVLVE 304

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 305 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 364

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 365 SIAIIREIGVECGGSNVQFAVNPVDGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 420

Query: 290 LWM 292
             +
Sbjct: 421 AKL 423


>gi|59802610|sp|O50236|CARB_ZYMMO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1112

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 98/305 (32%), Gaps = 35/305 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +          LE        +   A   + D+++ +Q +   G+    S  
Sbjct: 89  TMGGQTALNTALALASDGTLEKFNCEMIGADATAIDKAEDRLKFRQAMDKIGLESPRSSV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P +I+P       G  V    +     +    S +   ++LIE+
Sbjct: 149 AHSLEEALDGLDYVGLPAIIRPSFTMGGTGGGVAYNKEEFIDIVSGGLSASPTQEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +       ++  + T      +    Y+ ++  
Sbjct: 209 SVIGWKEYEMEVVRDRHDNCIIICSIENIDPMG-VHTGDSITVAPALTMTDKEYQIMRNA 267

Query: 231 AFLAHQAIGC---RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    + IG     G S   F  +P + ++  +E+N  P ++  S     +   G+   +
Sbjct: 268 SIAVLREIGVETGNGGSNVQFALNPENGRLVVIEMN--PRVSRSS--ALASKATGFPIAK 323

Query: 288 LLLWM 292
           +   +
Sbjct: 324 VATKL 328



 Score = 42.2 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 43/292 (14%), Positives = 89/292 (30%), Gaps = 33/292 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59
           ALE AG++   +         D D S  L    L  +    +LH                
Sbjct: 621 ALEAAGYETIMVNCNPETVSTDYDTSDRLYFEPLTGEDVLEILHTEQKNGTLVGVIVQFG 680

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G        +     + I  T    +  A   ++  +         P           + 
Sbjct: 681 GQTPLKLAAEIEKAGIPILGTSPDAIDLAEDRERFSALVSELGLLQPANGIARSRDEAIS 740

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +I+P        + +I     +   +  +   +    +LI+QY+   + T 
Sbjct: 741 VADKIGYPILIRPSYVLGGRAMEIIDGPSQLDDYIHTAVKVSGESPVLIDQYL--RDATE 798

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +   +     +             +S  ++  + P  +P  I +E++       +A+ 
Sbjct: 799 VDVDAVADGDDVVVAGILQHIEEAGIHSGDSACSIPPYSLPASIIEEIKSQTDKLARALK 858

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    F       KV+ +E+N +   T     P +A   G    ++   
Sbjct: 859 VQGLMNIQFAV--KGDKVYLIEVNPRASRT----VPFVAKADGRPVAQVAAR 904


>gi|21672427|ref|NP_660494.1| carbamoyl phosphate synthase large subunit [Buchnera aphidicola
           str. Sg (Schizaphis graminum)]
 gi|25008213|sp|Q8K9Z7|CARB_BUCAP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21623038|gb|AAM67705.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           Sg (Schizaphis graminum)]
          Length = 1077

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+K+  ++ +                     + V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYKIILVNSNPATIMTDPCMADATYIEPIHWKIVKKIIQKEQPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G        +   + IL+   +    + I A   + D+   +  +    +    C  
Sbjct: 89  TMGGQTALNCALELNRRGILKKFNVKIIGATIDAINKAEDRKLFEDSMKKLNLKTAKCGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +     +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHNIQEALLVLKNVGFPCIIRPSFTMGGHGGGIAYNQEEFEDICERGLKLSPTTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     +   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNNNCIIVCSIENLDPMGIHTGDSITIAPAQTLSDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MSILREIGVETGGSNVQFAINPKNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/319 (14%), Positives = 104/319 (32%), Gaps = 47/319 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI-----------DVD- 39
           + V+ GG +         G+           A AL + GF+   I           D+  
Sbjct: 563 IIVIGGGPN-------RIGQGIEFDYCCVHAAQALREDGFEAIMINCNPETVSTDYDISD 615

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                     +V  ++    P        G        Q   E + I  T+   +  A  
Sbjct: 616 RLYFEPITLENVLEIVRIENPKGVIIQYGGQTPLKLARQFEKEGIPIIGTNPDAIDKAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P+  ++L           I  P +++P        + ++ +   +
Sbjct: 676 RNRFQKIVTKLKLKQPLNATVLTLEEAHKKAIEIGYPIMVRPSYVLGGRAMEIVYEPCDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                +    NH   +L++QY++       V  DA  D  ++ +     +  +    S +
Sbjct: 736 DNYFKKFLKNNHITPILLDQYLN---YAIEVDVDAICDGEKVLIGGIMEHIEQAGVHSGD 792

Query: 211 STHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S   LPA      I  +++        A+  +G+    F     + +++ +E+N +   T
Sbjct: 793 SACSLPAYTLTNKIQNKIREQVKKLAFALSVKGLMNVQFAI--KNNEIYIIEVNPRAART 850

Query: 270 PVSIFPEMAAYAGYSFREL 288
                P ++   G +  ++
Sbjct: 851 ----VPFVSKATGLALAKI 865


>gi|124358358|gb|ABN05630.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 268

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 58/270 (21%), Positives = 105/270 (38%), Gaps = 44/270 (16%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLK--------------------------- 50
           S    A+ +    ++   I + +S    +                               
Sbjct: 1   SAIEIAANINKEKYEPLYIGITKSGVWKMCEKPCAEWENDNCYSAVLSPDKKMHGLLVKK 60

Query: 51  --------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                    D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  +
Sbjct: 61  NHEYEINHVDVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKN 120

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            G+      ++N+         + P  +KP + GSS G+  +     +   +   S+  +
Sbjct: 121 AGIATPAFWVINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQY 178

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVL 215
             ++LIEQ V G E+ C V+G+++  V          Y     +  +            +
Sbjct: 179 DSKILIEQAVSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITV 238

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
           PA +  +    +Q  A   ++A+GCRG++R
Sbjct: 239 PADLSAEERGRIQETAKKIYKALGCRGLAR 268


>gi|312142595|ref|YP_003994041.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
 gi|311903246|gb|ADQ13687.1| carbamoyl-phosphate synthase, large subunit [Halanaerobium sp.
           'sapolanicus']
          Length = 1068

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 103/302 (34%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ +                      S+  ++   KPD   +
Sbjct: 29  SGTQACKALMEEGYEIVLVNSNPATIMTDPEMADRTYIEPLNVSSLERIIEKEKPDALLS 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +     ILE   +        A     D++  K+ +    VP+  S+ 
Sbjct: 89  NLGGQTALNLSSELYEAGILEEHGVEIIGIQPEAIKRGEDRISFKEEMEKLDVPMPRSLP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      H +  P V++P       G  ++   + +        + +  +Q+LIE+
Sbjct: 149 AYSVDEAEKIAHDLGYPVVVRPAYTMGGTGGGLVYNVEELRNIAENGLAASMINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +    +      +  +I++   +       ++  +        +  D+   ++  
Sbjct: 209 AVIGWQ-ELELELVRDDNGKKISICFIENVDPMGVHTGDSFCVAPMLTVSQDVQDRIEEY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++    AIG  G +   F ++P   ++  +E+N +   T  S     +   G+    +  
Sbjct: 268 SYKIADAIGVIGGANFQFGYNPEEDRMVVIEMNPR---TSRSS-ALASKATGFPIARIST 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 42.6 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 87/295 (29%), Gaps = 32/295 (10%)

Query: 22  CASA--LEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVL 58
             +A  L+D G++   +           D+             V  +    +PD      
Sbjct: 575 VHAAFTLDDLGYESVMVNCNPETVSTDYDISNKLYFEPLTTEDVLRIYEKEQPDGMIVQF 634

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +   +     + I  T    +  A + ++ R+         P            
Sbjct: 635 GGQTPLNIAAELEEAGVNILGTSPASIDFAENREEFRALMNKLDIPQPESDIAKSVEEAY 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P +++P       G+ ++  ++S+   +  + +    +  ++        L 
Sbjct: 695 AIAESIGYPLMLRPSYVLGGRGMEIVYDEKSLTKYINTAVAEVSAEHPILIDKFLEDALE 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
             V        T +       +  E    S +S   +P   I  +  + ++  +    + 
Sbjct: 755 AEVDALTDGKETFV--AAVMEHIEEAGIHSGDSACAIPSINITDEQLETIKDYSAKIAEG 812

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F       KV+ +E N +   T     P ++   G +   L   +
Sbjct: 813 LDVVGLMNIQFAI--YEGKVYIIEANPRASRT----VPLVSKVTGINMARLATRL 861


>gi|238922175|ref|YP_002935689.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750]
 gi|238873847|gb|ACR73555.1| carbamoyl-phosphate synthase [Eubacterium eligens ATCC 27750]
          Length = 1072

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  +           D+             +  ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVEALKQIILKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      LE   +    +  L    + D++  K+ +   G P  PS  +
Sbjct: 90  LGGQAGLNLAMEIAETGFLEEHNVKLIGTTALTIKKAEDRLMFKETMEKIGEPCAPSLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P V++P       G  +    Q +   L      +   ++L+E+ 
Sbjct: 150 NNVEDGEAFAAKIGYPVVLRPAYTLGGSGGGIANNVQELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDSNGTCITICNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIDELGITGGCNVQYALHPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 98/293 (33%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  GF+   I         D D              V  ++   KPD A     G   
Sbjct: 581 AFKKEGFETVIINNNPETVSTDFDIADKLYFEPLTAEDVESIVDFEKPDGAVVQFGGQ-- 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    +++    +P      +      + + 
Sbjct: 639 TAIKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEQTQIPRAKGQTVFTVDEALKAA 698

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    
Sbjct: 699 NELGYPVLVRPSYVLGGQGMQIAVSDEDVVEFMNIINRIKQDHPILVDKYLMGKEIEVDA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V P   I   I   ++       +A+  
Sbjct: 759 VCDGQDILI----PGIMEHIERAGIHSGDSISVYPAKSISPKIVDMIEDYTGRLARALHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 815 KGMINIQFIV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861


>gi|259503438|ref|ZP_05746340.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041]
 gi|259168516|gb|EEW53011.1| carbamoyl-phosphate synthase [Lactobacillus antri DSM 16041]
          Length = 1060

 Score = 62.6 bits (150), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G++   ++ +                       V  V+   +P        G
Sbjct: 577 CVKALQGLGYEAIVMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPAGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         + I  T    L +A                 PV  +   ++  +D+
Sbjct: 637 QTAINLAAGLEKNGVRILGTSVKDLDAAEDRRIFDEIIKQLGLKQPVGLTATTHQGVIDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L +++       +LI+ Y++G E    
Sbjct: 697 ATEIGYPVLVRPSYVLGGKAMEIVYNEDELRQYLKENADVASDHPILIDAYLEGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P     DI +++         A+ C
Sbjct: 757 AICDGQDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFDEDIKRQIVDATKKLAIALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           RGI    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 814 RGIMNIQFII--HDHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALREEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRKEYPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +         +L+ L I    + + +   + D+ + K+++      VP   +
Sbjct: 89  TLGGQIGLNLAVALSKTGLLDELGIQLLGTKLASIDQAEDREKFKELMQQLGEPVPASQT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D  H I  P +++P       G  +   D+ +          +   Q LIE+
Sbjct: 149 VSTVAEALDFAHQIGYPVIVRPAFTMGGTGGGMCHNDEELRTIAANGLDLSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEVEFEVMRDAADNAMVVCCMENFDPVGIHTGDSIVFAPSQTLSDRDYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|291619625|ref|YP_003522367.1| DUR1,2 [Pantoea ananatis LMG 20103]
 gi|291154655|gb|ADD79239.1| DUR1,2 [Pantoea ananatis LMG 20103]
          Length = 1201

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 16/185 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++K   GG  +G+ V +    +             +      +++    
Sbjct: 144 CRVAETVGYPVMLKSTAGGGGIGMRVCRDSHELTEAFDTVQRLGQNNFSDAGVFLENYIE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        +  V         ++  +       PA    + + + +   A    +
Sbjct: 204 RARHLEVQIFGDGQGDVIALGVRDCSVQRRNQKVIEETPAPNLPEGMAQALCEAAVALGK 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D L+++ ++LE+N +     G+T      ++    G    +L+ WM
Sbjct: 264 AVNYRSAGTVEFVYDSLNQQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVKWM 312

Query: 293 VEDAS 297
           +E A+
Sbjct: 313 IELAA 317


>gi|57239360|ref|YP_180496.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58579326|ref|YP_197538.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|57161439|emb|CAH58363.1| carbamoyl-phosphate synthase, large subunit [Ehrlichia ruminantium
           str. Welgevonden]
 gi|58417952|emb|CAI27156.1| Carbamoyl-phosphate synthase large chain [Ehrlichia ruminantium
           str. Welgevonden]
          Length = 1075

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  I+ + +                     +  ++   KP     
Sbjct: 29  SGTQACKTLKKEGYRIILINSNPATIMTDPEIADSTYIEPITTHILEKIIIKEKPSAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +   A   + D+   +Q +   GV    SI+
Sbjct: 89  TVGGQTALNAAISLCNTGILEQYNVKLIGATKEAIKKAEDRNLFRQAMDRIGVKYPKSII 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P      +G  +    +    ++    + +   ++ +++
Sbjct: 149 IRSVDEINYALEYIGLPAIIRPSFTLGGIGGGISYNKEEFQKNIEYGLNISPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +         ++  K     
Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNNDILVIEMN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    I    +   +  L+ D+M+ +Q++    +   P+I  N       +   +  P +
Sbjct: 659 LHQKNIRILGTSFDSIDLAEDRMKFQQLLMQLNIKQPPNITYNSKDELLKNIETLDFPIL 718

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++P    G     I+   +  +    +  + ++HG  LL +   + +E+    + D    
Sbjct: 719 VRPSYVLGGQSMSIIRDNNALLNYLTIHKNIFDHGSLLLDQFLTNAVEVDVDAICDGKDT 778

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    +  +    +         A+  +G     +
Sbjct: 779 YIAGIMEHIEEAG---VHSGDSACSLPAYTLTKETIDTIANYTKKISLALNVQGFINIQY 835

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                + +++ LE+N +   T     P +A   G    ++   ++
Sbjct: 836 AI--HNNEIYILEVNPRASRT----VPFIAKATGIPIAKIATEIL 874


>gi|22095485|sp|O50302|CARB_BACST RecName: Full=Carbamoyl-phosphate synthase pyrimidine-specific
           large chain; AltName: Full=Carbamoyl-phosphate
           synthetase ammonia chain
 gi|2661433|emb|CAA05020.1| carbomylphosphate synthetase large subunit [Geobacillus
           stearothermophilus]
          Length = 1064

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYKVILVNSNPATIMTDTEIADKVYMEPLTLDFVARIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +LE   +    + + A   + D+ + +         VP    I
Sbjct: 90  LGGQTGLNLAVELAKAGVLEECGVEILGTKLEAIEKAEDREQFRALMNELGEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HSLEEAYAFVEQIGYPVIVRPAFTLGGTGGGICTNEEELVEIVSTGLKLSPVHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRL 230
           + G                   V  +      +   + +S  V P++   D  Y+ ++  
Sbjct: 210 IAG--YNQIEYEVMRDANDNAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S + + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKIIRALGIEGGCNVQLALDPDSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIKQAGYEAIIINNNPETVSTDFSTSDKLYFEPLTAEDVMHVIDLEQPVGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + +  T    L  A   DK            P   + +     +     
Sbjct: 640 INLAAELEARGVRLLGTTLEDLDRAEDRDKFEQALSELGIPKPAGKTAVSVEEAVAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   +  +   N    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYNREELLHYMEHAVRVNPQHPVLVDRYITGKEVEVDAIA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  D+  ++        + +   G+
Sbjct: 760 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSDDVIAKITDYTVKLARGLHIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F+       V+ LE+N +   T     P ++   G     L    +  A
Sbjct: 817 LNIQFVVAGSD--VYVLEVNPRSSRT----VPFLSKITGVPMANLATKAILGA 863


>gi|319649995|ref|ZP_08004144.1| carbamoyl-phosphate synthase(Arginine-specific) large chain
           [Bacillus sp. 2_A_57_CT2]
 gi|317398176|gb|EFV78865.1| carbamoyl-phosphate synthase(Arginine-specific) large chain
           [Bacillus sp. 2_A_57_CT2]
          Length = 1041

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G    +AL++ G+KV  ++ +                      S+  ++   +PD     
Sbjct: 30  GTQACAALKEEGYKVILVNNNPATIMSDKAFADKVYFEPMTADSLEKIIKIERPDGLLAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +           +++  +    +      +  R      +  VP    +
Sbjct: 90  LGGQTGLNLAFKLSESGVLEHYGVKLLGSSIESIKKGEDREAFRKLMNELNEPVPESIIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   +      +   Q L+E+ 
Sbjct: 150 HEVNEAIQFAREIGFPIIVRPAYTLGGTGGGIAGDFDELTSLVQGGLKESAISQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T I +   +       ++  +        +  D Y+ ++  +
Sbjct: 210 IAG-FKEVEYEVMRDSQNTCITICNMENIDPVGVHTGDSIVVAPSQTLTDDEYQMLRTAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     F  DP S+  + +E+N  P ++  S     +   GY    +   
Sbjct: 269 IKIISELGIIGGCNIQFALDPHSKNYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325



 Score = 39.1 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 35/299 (11%), Positives = 83/299 (27%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           S +    AL D G +   I+                     +   +  V+          
Sbjct: 577 SVQGVF-ALRDEGVETIMINNNPETVSTDYTTADRLYFEPLILEDILNVIEAEGISEVIV 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVN 114
            L G       + + LE   +    +         D+    Q++    +P      +   
Sbjct: 636 QLGGQ--TALNLASALENYGVTLLGTDSNTIDALEDRKLFYQLLDDLNIPRIKGDVVHSE 693

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               ++   I  P +++P       G+  I     +   L +                + 
Sbjct: 694 EELKEAAENIGFPILVRPSYVIGGRGMERISSSSELEGYLAKGDVPYPILIDQFVHASEA 753

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                              + K+  +S        + + + P  +  ++  ++   A   
Sbjct: 754 ELDLAADGNHICAPAIMEHIEKTGVHS------GDSMSVLPPQNLSENVQNKMLAYAKAI 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            Q +  +G+    ++ +    +VF LEIN +   T     P ++   G     +   ++
Sbjct: 808 VQKLRYKGLMNIQYIVN--GEEVFILEINPRASRT----VPIISKVTGVQLVGIATKIL 860


>gi|258545416|ref|ZP_05705650.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258519385|gb|EEV88244.1| carbamoyl-phosphate synthase, large subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 1123

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 82/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ +                      +V  ++A  +PD    
Sbjct: 86  SGAQACKALRSEGFRVILVNSNPATIMTDPEMADATYIEPIQWQTVEKIIAKERPDAILP 145

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            + G         +     L        G    A+   + R     +   +        +
Sbjct: 146 TMGGQTALNCALDLAKHGVLERYGVALIGASVQAIETAEDRDLFKKAMSEIGLASAKSFA 205

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +Q  +  P +I+P       G  +                 +   ++L+E+
Sbjct: 206 VHSLEEARAAQAELGFPVIIRPSFTLGGSGGGIAYNRDEFEQITAHGLELSPTHEVLLEE 265

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 266 SLLGWKEFEMEVVRDQADNAIIVCAIENFDPMGVHTGDSITVAPAQTLTDKEYQALRDAS 325

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 326 IAILRKIGVETGGSNVQFAINPRDGRIIVIEMN--PRVSRSS--ALASKATGFPIASVAA 381

Query: 291 WM 292
            +
Sbjct: 382 RL 383



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 88/288 (30%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   +         D D              V  +    +PD       G   
Sbjct: 639 ALREDGIETIMVNCNPETVSTDFDTADRLYFEPLTLEDVLEIARIEQPDGVIVQYGGQTP 698

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 699 LKLARALEAAGVPIIGTPPDAIDRAEDRERFQHLIDELKLLQPPNRTASDTAEALAKAQE 758

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +   + ++   +    +L+++++D   +   +  
Sbjct: 759 IGYPLVVRPSYVLGGRAMDIVHNDADLENYMKEALHVSPDAPILLDRFLD-DAIEVDIDV 817

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +   +             +S  ++  + P ++   I ++++  A    +A+G  G+
Sbjct: 818 ICDGETVILGGLMEH-IEQAGVHSGDSACSLPPYRLAPAICEQIEAQAKALARALGVVGL 876

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F        ++ LE+N +   T     P ++   G    ++   
Sbjct: 877 MNAQFAV--KGDAIYILEVNPRASRT----VPFVSKATGRPLAKIAAR 918


>gi|220936246|ref|YP_002515145.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7]
 gi|219997556|gb|ACL74158.1| urea carboxylase [Thioalkalivibrio sp. HL-EbGR7]
          Length = 1204

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 63/185 (34%), Gaps = 16/185 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + + ++ +          +  +      +++       
Sbjct: 147 ALRIGYPVMLKSTAGGGGIGMQICRSEKQLEEAFHSVERLSRNNFGQGGIFLEKYVEYAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        E  V         ++  +       PA    D +  ++   A    QA+ 
Sbjct: 207 HLEVQIFGDGEGRVVALGERDCSVQRRNQKVIEETPAPGIDDGLRAQLMDAAVRLGQAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     ++++D  +   ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 267 YRSAGTVEYVYDTRTGAFYFLEVNTRLQVEHGVTE--------EVTGV---DLVAWMVRL 315

Query: 296 ASCLR 300
           A+  R
Sbjct: 316 AAGER 320


>gi|56750828|ref|YP_171529.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus
           PCC 6301]
 gi|81299522|ref|YP_399730.1| carbamoyl phosphate synthase large subunit [Synechococcus elongatus
           PCC 7942]
 gi|56685787|dbj|BAD79009.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Synechococcus elongatus PCC 6301]
 gi|81168403|gb|ABB56743.1| carbamoyl-phosphate synthase large subunit [Synechococcus elongatus
           PCC 7942]
          Length = 1097

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPATIMTDPETADRTYIEPLTPELVAQVIERERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +          L+   +    + + A   + D++  K+ +   GV VCPS  
Sbjct: 89  TMGGQTALNLAVALAKNGTLDRFGVELIGAKLEAIEKAEDRLLFKEAMERIGVKVCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ + + P +I+P       G  +    +   L +      +   Q+L+E
Sbjct: 149 ANNMAEAQAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEFELIVQSGLDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P    V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIAIIREIGVETGGSNIQFAINPQDGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 22/173 (12%), Positives = 60/173 (34%), Gaps = 9/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P V++P        + ++  D  +   + ++        +LI+++++       
Sbjct: 727 AHRIGYPTVVRPSYVLGGRAMEIVYSDAELERYMTEAVQVEPDHPILIDKFLENAIEVDV 786

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
                +    ++ +     +  +    S +S   LP     + + + ++       +A+ 
Sbjct: 787 --DALADRTGQVVIGGIMEHIEQAGIHSGDSACSLPTVSLNETVLETIRAWTTQLAKALN 844

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+    F       +V+ LE N +   T     P ++   G    ++   +
Sbjct: 845 VIGLMNIQFAV--KDEQVYILEANPRASRT----VPFVSKAIGRPLAKIAARL 891


>gi|332185714|ref|ZP_08387461.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. S17]
 gi|332014072|gb|EGI56130.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp. S17]
          Length = 1110

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIKALKEEGYRIVLVNSNPATIMTDPELADATYVEPITPAVVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    +   A   + D+ + +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALFHDGTLEKFGVQMIGADAEAIDKAEDRQKFRLAMDKIGLESARSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  V    +     +      +   ++LIE+
Sbjct: 149 AHTEAEALAGLEKVGLPAIIRPSFTLGGTGGGVAYNREEFIAIVRAGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNSIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + ++   Q +   +  +   +    +LI+QY  D IE+  
Sbjct: 740 AERVGYPVLMRPSFVLGGRAMEIVDGPQQLEDYIQTAVQVSGDAPVLIDQYLRDAIEVDV 799

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +P +I  E++R A    + + 
Sbjct: 800 DAICDGDQVVVAGVLQHIEEAG---VHSGDSACSLPPYSLPEEIIAEIERQAEALARGLN 856

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F       +V+ +E+N +   T     P +A   G    ++   
Sbjct: 857 VRGLMNIQFAV--KDGQVYLIEVNPRASRT----VPFVAKAIGTPIAKIAAR 902


>gi|296184871|ref|ZP_06853282.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|296050653|gb|EFG90076.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 1062

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKAIKEEGIETILINSNPATIMTDSNMADKVYIEPLTLECVKEIIEKERPDGILA 88

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G                    +++   +S  +  A   ++ +   + ++  +P+   
Sbjct: 89  GFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLMIENNQPIPMSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +I+P       G  + +    +          +   Q+L+EQ
Sbjct: 149 ATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGIKMSPIGQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   +       ++  +        +    Y  +++ 
Sbjct: 209 SVAGW-KELEYEVIRDGKDNCIIICNMENIDPVGIHTGDSIVVAPSQTLRDKEYHMLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  D  S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 AIDIIRSLKIEGGCNIQFALDTESSNYVVIEVN--PRVSRSS--ALASKATGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV------------LHGNFG 63
           A+++ G K   I         D D +  L    L  D   N+            L G   
Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVEGVIVQLGGQTS 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +   + ++I  +    +  A   DK R      +   P   +++       +   
Sbjct: 640 INLAQKLYEKGVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAVEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + V+   + +   + ++   +    +LI++Y+ G E+    + 
Sbjct: 700 LQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  +    +        + +   G+
Sbjct: 760 DGEDILMPGIMEHVERTG---VHSGDSITVYPYMTLKEETINTLIEYTKKITKNMNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               ++FD     V+ +E+N +   T     P ++   G    ++
Sbjct: 817 VNIQYVFD--GNNVYVIEVNPRASRT----VPILSKVTGVPMVKI 855


>gi|323339842|ref|ZP_08080111.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644]
 gi|323092715|gb|EFZ35318.1| carbamoyl-phosphate synthase [Lactobacillus ruminis ATCC 25644]
          Length = 1061

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++                        SV  +L    PD    
Sbjct: 29  SGTQACMALREEGYEVVLVNSNPATIMTDTKIADKVYIEPLTTESVSRILRQEYPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPS 110
            L G  G +  +      IL+ L I    + + A   + D+ + K+++   +  +P   +
Sbjct: 89  TLGGQIGLNLAIALAKTGILDELHIELLGTKLEAIDQAEDREKFKELMQDLNEPIPASKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    Q +          +   Q LIE+
Sbjct: 149 VNTVEEALEFADEIGYPVIVRPAFTMGGTGGGMCDNKQQLQEICANGLDLSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S +   +     +F    +                 + Y+ ++  
Sbjct: 209 SIKGYKEVEYEVMRDSANNAMVVCSMENFDPVGIHTGDSIVLAPTQTLTDRE-YQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYEYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQKAGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIELEQPLGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         +++  T    L  A   +             P+  +       M+  H
Sbjct: 639 AINLAAGLEAHGVKVLGTTVEDLDRAEDRELFDQVINNLGLKQPIGKTATTQEQVMECAH 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  D  +   L  ++       +L++ Y++G E     +
Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVNNDAELEEYLSHNAKAEIDHPILVDAYLEGYECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     D+  ++         A+ C G
Sbjct: 759 CDGKDVLLPGIMEHIEHAG---VHSGDSMAVYPPQSFSQDVKDQIVEATKKLAVALKCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+      + + LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFII--HKGEAYVLEVNPRASRT----VPFLSKITGIEMTQVATQVI 860


>gi|296532782|ref|ZP_06895461.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis
           ATCC 49957]
 gi|296266890|gb|EFH12836.1| carbamoyl-phosphate synthase, large subunit [Roseomonas cervicalis
           ATCC 49957]
          Length = 1081

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALRAEGYRVILVNSNPATIMTDPGLADATYIEPITVEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +LE        +       + D+++ +  ++  G+    S +
Sbjct: 89  TMGGQTALNTSLKLAEAGVLEKYGCELIGAKAEVIDKAEDRLKFRDAMTKIGIESPRSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +          L+  P VI+P       G  +    +     +    S +  +++LIE+
Sbjct: 149 AHTMEEARAGLELVKLPCVIRPSFTLGGTGGGIAYNREEFEQIVAAGLSASMTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDSADNCIIVCSIENVDPMGVHTGDSVTVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLREIGVDTGGSNVQFGINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 104/323 (32%), Gaps = 50/323 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETVMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL---------------HGNFGEDGLVQAILELLEIPYTHSGILAS 87
            L    L  +   +++               +G       +   L    IP   +   A 
Sbjct: 616 RLYFEPLSAEDVISLIRKEQEKGEVLGCIVQYGGQTPLK-LSQALHKAGIPILGTSAEAI 674

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
            ++ D+ R +Q++ S G+    +  +      ++    I  P V++P        + +  
Sbjct: 675 DIAEDRERFQQLLKSLGLQQPQNGIVRTLEEAVEEAERIGYPVVVRPSYVLGGRAMEIAY 734

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             + +     Q +    G+  ++        +   V   A  D         +       
Sbjct: 735 NREQLLR-FGQEAVKVSGENPILIDQYLQDAIEVDVDCIADEDGQVYVAGVMEHIEEAGI 793

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   +  E++       +A+  RG+    +       ++F LE+N +
Sbjct: 794 HSGDSACSLPPYSLAPSVITELKAETEAMARALKVRGLMNVQYAV--KDGEIFVLEVNPR 851

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P +A   G    ++
Sbjct: 852 ASRT----VPFVAKATGVPVAKI 870


>gi|282896367|ref|ZP_06304388.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Raphidiopsis brookii D9]
 gi|281198655|gb|EFA73535.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Raphidiopsis brookii D9]
          Length = 1083

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPETADRTYIEPLTPEMVAKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+      +   GV VCPS  
Sbjct: 89  TMGGQTALNIAVALAKNGVLEEYNVELIGAKLPAIEKAEDRKLFNDAMEKIGVSVCPSGT 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +               P +I+P       G  +    +   +        +   Q+LI+
Sbjct: 149 ASTLEESKAIAQRIGSYPLIIRPAFTMGGTGGGIAYNKEEFEVMAQVGIDASPVSQILID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGIHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPVNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327


>gi|167902196|ref|ZP_02489401.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei NCTC 13177]
          Length = 1084

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|33519597|ref|NP_878429.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia
           floridanus]
 gi|33517260|emb|CAD83644.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia
           floridanus]
          Length = 1088

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D +              +  ++   +PD    
Sbjct: 29  SGTQACRALREEGYRLILVNSNPATIMTDPNMADATYIESIKWEIIYKIIKKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   Q IL+   I    S + A   + ++ + ++ +   G+ V  S  
Sbjct: 89  TMGGQTALNCVLDLDRQGILKEYNIIIIGSTVDAINKAENRKKFQESIKKIGLEVPKSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     I  P +I+P       G  V    Q            +   +LLI++
Sbjct: 149 ACNIDEAMLILENIGLPCIIRPSFTLGGSGGGVAYHVQEFQSICQNGFRLSLNHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVIRDLNDNCIVVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G +   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 FMILREIGVRSGGANVQFAVNPDNGRIVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 39.9 bits (91), Expect = 0.52,   Method: Composition-based stats.
 Identities = 20/181 (11%), Positives = 64/181 (35%), Gaps = 11/181 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
              I  P V++P        + ++  ++ +   L  +   ++   +L++ +++  IE+  
Sbjct: 706 AVNIGYPIVVRPSYVLGGRAMQIVYNEKELLYYLKDAIHVSNHAPVLLDHFLENAIEVDV 765

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D         +   +       +S  ++  +    +  +I  ++++          
Sbjct: 766 DVVCDGEHVFIGGIMEHIEHAG---VHSGDSACSLPAYTLNREIQDKIRQQVKKIALGFN 822

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW-MVEDASC 298
            +G+            +++ +EIN +   T     P ++        ++    M+  + C
Sbjct: 823 IKGLMNVQLAI--QKDEIYIIEINPRASRT----IPFVSKAINVPLAKVGTRVMIGQSLC 876

Query: 299 L 299
            
Sbjct: 877 N 877


>gi|126439069|ref|YP_001058520.1| carbamoyl phosphate synthase large subunit [Burkholderia
           pseudomallei 668]
 gi|126218562|gb|ABN82068.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 668]
          Length = 1084

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFHHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +      E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQTVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|67921146|ref|ZP_00514665.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Crocosphaera watsonii WH 8501]
 gi|67857263|gb|EAM52503.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Crocosphaera watsonii WH 8501]
          Length = 1081

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPGMANRTYIEPLTPDMVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIKKAEDRDLFKEAMNKIGVPVCPSGI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +PL+  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPLNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 36.0 bits (81), Expect = 6.6,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++    P        G       V     L          +          ++ 
Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSPECPVQTKIWGTSPDSIDTAED 681

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150
                 +    +I      +   +         I  P V++P        + ++  D+ +
Sbjct: 682 RERFEKILNDLNIKQPPNGIARSYEESAVVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI++++    +   V          +     +       +S  +
Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLQN-AIEVDVDALCDATGKVVIGGIMEHIEQAGVHSGDS 800

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  V    +  +  + ++        ++   G+    +       +V+ LE N +   T 
Sbjct: 801 ACSVPFTTLSSNAIETIRTWTTQLANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857

Query: 271 VSIFPEMAAYAGYSFREL 288
               P ++   G    ++
Sbjct: 858 ---VPYVSKATGRPLAKI 872


>gi|313205940|ref|YP_004045117.1| carbamoyl-phosphate synthase large subunit [Riemerella
           anatipestifer DSM 15868]
 gi|312445256|gb|ADQ81611.1| carbamoyl-phosphate synthase large subunit [Riemerella
           anatipestifer DSM 15868]
 gi|315022253|gb|EFT35281.1| Carbamoyl-phosphate synthase large chain [Riemerella anatipestifer
           RA-YM]
 gi|325336619|gb|ADZ12893.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Riemerella anatipestifer RA-GD]
          Length = 1060

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 91/279 (32%), Gaps = 30/279 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++ G++   I+ +                       V  ++   KP        G   
Sbjct: 581 AIKEMGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + DK            P+  +       +   + 
Sbjct: 641 INLADKLSAHGVKILGTSLEDLDRAENRDKFEKALQELGIPQPLGKTSTSKEEAIAIANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +Q +   +  +   +    +LI++YV G E+    + 
Sbjct: 701 IGYPVLVRPSYVLGGRAMEIVYTEQELTHYMEHAVDASPEHPVLIDRYVTGKEVEVDAIS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +      +++       + +   G+
Sbjct: 761 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNLTEKQIHDLEDYTIRLAKGLNVVGL 817

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++ D  S +VF +E+N       P ++ ++  P  
Sbjct: 818 MNIQYVID-QSGEVFVIEVNPRSSRTVPFLSKITDVPMA 855



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  I+ +                       V  ++   +PD    
Sbjct: 28  SGTQACLSLKEEGYRVILINSNPATIMTDVEIADKVYIEPISLEFVSQIIRKERPDALLP 87

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+           +E+  T    +  A   D  R         VP    
Sbjct: 88  TLGGQTGLNMAVELEKSGILEECKVEVLGTKLSAINQAEDRDLFRELMRELGEPVPESDI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P +++P       G  +   +  +   +     ++   Q LIE+
Sbjct: 148 VNTVEQALNFANTIGYPVIVRPAFTMGGTGGGIASDETELKEIVANGLKYSPVTQCLIEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y+ ++  
Sbjct: 208 SIAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 267 SLKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAA 322

Query: 291 WM 292
            +
Sbjct: 323 KI 324


>gi|255530040|ref|YP_003090412.1| carbamoyl phosphate synthase large subunit [Pedobacter heparinus
           DSM 2366]
 gi|255343024|gb|ACU02350.1| carbamoyl-phosphate synthase, large subunit [Pedobacter heparinus
           DSM 2366]
          Length = 938

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILQERKIDAVLP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  ++A    I E   +      + A   + ++   +Q++   GV V  S  
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYGVKVIGVDVAAIEKTENREAFRQLMVDIGVGVATSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P       G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLGGYGGGFVHKKEEFDQALKRGLEASPTHEVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +F    +      +                 + 
Sbjct: 209 AVLGWKEYELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IRMMRAIGNFAGGCNVQFSVNPDNDEIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/259 (11%), Positives = 79/259 (30%), Gaps = 11/259 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++    P      L G        +     ++I  T    + 
Sbjct: 611 DKLYFEPVFW---EHVREIIELENPVGVIVQLGGQTALKMAEKLHENGIKIIGTSYNDMD 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P           +   + +  P +++P       G+ ++  
Sbjct: 668 VAEDRGRFSDLLKELDIPYPKYGVAENAEEAIVVANEVGYPVLVRPSYVLGGQGMSIVIN 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   +++      G+++LI+ ++D           +  +   I             +
Sbjct: 728 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEETESDSISDGEDVHIVGLMEHIEP-AGIH 785

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +   +  +++  +    +A+   G+    F       KV+ +E N + 
Sbjct: 786 SGDSSAVLPPFSLSEKVMNDMETYSKKIARALNVIGLLNIQFAV--KDEKVYVIEANPRA 843

Query: 267 GMTPVSIFPEMAAYAGYSF 285
             T     P +A      +
Sbjct: 844 SRT----VPFIAKAYDVPY 858


>gi|229816276|ref|ZP_04446585.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM
           13280]
 gi|229808127|gb|EEP43920.1| hypothetical protein COLINT_03328 [Collinsella intestinalis DSM
           13280]
          Length = 1094

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 89/313 (28%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  ++ +                       +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGYEVVLVNSNPATIMTDPGLADRTYVEPITPEFIERVIERERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         +LE   +      + A     D+             V     
Sbjct: 89  TLGGQTGLNAAVDLARSGVLERYGVEMIGCDLAAIERGEDRKLFNEAMAELGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P V++P       G  +   +  +   + Q    +   ++L+E+
Sbjct: 149 AYSVEDALAIVERTGYPCVLRPSFTMGGAGGGIAHDEAELIQIVTQGLELSPAGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +     +      +         L+  +     
Sbjct: 209 SIEGWKEYEMEVMRDRAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQNGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E+   +
Sbjct: 327 AVGYTLDEITNDI 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/272 (9%), Positives = 82/272 (30%), Gaps = 13/272 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   +P      L G    +         ++I  T    + 
Sbjct: 628 DRLYFEPVTY---EDVMDIVDAERPVGVITTLGGQTPVNLTRALAESGVKIMGTQPDAID 684

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P                 I  P +++P       G+++   
Sbjct: 685 FAEDRERFSALLDRLGIMYPPAGMATSFEEAEAVAAQIGYPLLVRPSYVLGGRGMMIAYD 744

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   + +++  +    + ++++++G        + D         +   +       
Sbjct: 745 AERLREYMAEATRVSPDHPIYLDRFLEGAYESDVDALCDGENVYIGGILEHIEEAGIHSG 804

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++T + P      + ++++        A+G RG+    +        ++ +E N +
Sbjct: 805 ---DSATCIPPFSFSESLQEKLRETTRRIALALGVRGLVNVQYAV--KGDAIYVIEANPR 859

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              T     P ++   G         ++  A+
Sbjct: 860 ASRT----VPFISKATGVPLARCAARIMAGAA 887


>gi|134299540|ref|YP_001113036.1| carbamoyl phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
 gi|134052240|gb|ABO50211.1| carbamoyl-phosphate synthase large subunit [Desulfotomaculum
           reducens MI-1]
          Length = 1071

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                       V  V+   KPD     
Sbjct: 30  GTQACRSLKEEGLEVILVNSNPATIMTDANMADKVFIEPLTPEFVTRVIRQEKPDGLLPT 89

Query: 58  LHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +       Q +L+  E+    + + A   + D+   K ++      VP    +
Sbjct: 90  LGGQVGLNIALQLAEQGVLDEEEVLLLGTPLDAIRKAEDREMFKLMMEQIAEPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  + K  + +    ++    +   Q+L+E+ 
Sbjct: 150 CSVWEAVEFADDIGYPVIVRPAYTLGGTGGGIAKNQEELKAVAIRGLKHSLIGQILVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVIRDSADNCITVCNMENFDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +++G  G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRSLGIEGGCNVQFALDPHSYQYYVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/288 (11%), Positives = 79/288 (27%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I+                     V   V  +L    P        G   
Sbjct: 583 ALKEEGIEAITINNNPETVSTDFDTSDRLYFEPLVAEDVMNILEKENPLGVIVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +          +I  T    +  A   ++     V      P   +    +        
Sbjct: 643 INLAKPLEKAGYQILGTSVDAIDIAEDRERFDKLLVDLDIPKPPGRTAYSLQEATAIAGE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   + ++        +L++ Y+ G E     + 
Sbjct: 703 IGFPVLVRPSYVLGGRAMEIVYSQEELHAYMERAVKVTPDHPVLVDHYMVGKEFEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +        S             ++             +A+G +G+
Sbjct: 763 DGKTVLIPGIMEHIERAGVHSGDSISVYPAQTLTPTQIEQMVS---YTERLARALGVKGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               ++      +++ +E+N +   T     P ++   G     L   
Sbjct: 820 VNIQYVLHE--GQIYVIEVNPRSSRT----VPYLSKVTGVPMVNLATK 861


>gi|329571889|gb|EGG53567.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1467]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGSMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|327401416|ref|YP_004342255.1| carbamoyl-phosphate synthase large subunit [Archaeoglobus veneficus
           SNP6]
 gi|327316924|gb|AEA47540.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           veneficus SNP6]
          Length = 1076

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++    PD    
Sbjct: 29  SGSQACKALREEGYEVVLVNSNPATIMTDPEMADRTYIEPLTADVVARIIERETPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G         +  +  L +      G    A+   + R         +    P    
Sbjct: 89  TLGGQTALNIAVQLGEMGVLDKYGVELIGAKLDAIKKAEDRELFKECMHRIGLEVPRSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G  +    + +          +  +Q+LIE+
Sbjct: 149 ANDISEALSIAEEIGYPVVVRPAFTLGGTGGGIAYNREELKEIAAHGLEMSMINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 GVIGWKEFELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDWEYQRLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIREIGVETGGSNIQFAVHPTTERFVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 86/289 (29%), Gaps = 31/289 (10%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++   ++                         V  +  + KP+       G    
Sbjct: 590 LKEEGYETIMVNNNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVIVQFGGQTPL 649

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   Q      +I  T    +  A   ++            P            +    I
Sbjct: 650 NIAKQLESSGAKILGTSVDSIDIAEDRERFAELCNRLGIPQPENGIAHSIEEAKEIAARI 709

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
             P +++P        + ++  ++++   + ++   +    +LI+++  D IE+    + 
Sbjct: 710 GYPVLVRPSYVLGGRAMEIVYDEETLERYISEALEVSPEKPILIDKFLEDAIEVEVDALC 769

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +  DI   +          +   G+
Sbjct: 770 DGEEVVIGGIMEHIEEAG---VHSGDSACVLPPVSLSQDIIDRIVDYTRKMALELNVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +        V+ LE N +   T     P ++   G    ++   +
Sbjct: 827 INIQYAV--KDNIVYVLEANPRASRT----VPFVSKATGIPLAKIAAKL 869


>gi|23098946|ref|NP_692412.1| carbamoyl phosphate synthase large subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777174|dbj|BAC13447.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Oceanobacillus iheyensis HTE831]
          Length = 1068

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V                   + ++      +  ++    PD    
Sbjct: 29  SGTQACHALKEEGYTVILANSNPATIMTDHTVADKVYMEPLTEEFLTKIIRKENPDAILP 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +++  +    +  A   +  R         VP    
Sbjct: 89  TLGGQTGLNLAMELFHKGILEDHQVQLLGSAPASIEKAEDRELFRKLMNELGEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D  H I  P +++P       G  +   ++ +        S +  +Q LIE+
Sbjct: 149 VHTVEEAFDFAHTIGFPLIVRPAYTLGGTGGGMCYNEEDLKEITKNGLSLSPVNQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y  ++  
Sbjct: 209 NIAG-FKEIEYEVMRDKNDQAIVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYHLLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRIIRALEIEGGCNVQLALDPNSFQYYIIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 98/290 (33%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++ G++   ++ +                       V  V+   +P+       G   
Sbjct: 580 AIKEMGYEAIIMNNNPETVSTDFTISDKLYFEPLTLEDVMHVVELEQPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   DK            P   ++      +D+ + 
Sbjct: 640 INLAEGLERRGVRILGTGLDAIDRAEDRDKFEVLLDELDILRPKGKAVPRLDQAIDTANE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +Q +   L +SS  +    +LI++Y+ G+E+    + 
Sbjct: 700 IGYPVLVRPSYVIGGSRMEIVYNEQELENYLKKSSHIDSAHPILIDKYLTGMEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P ++   + ++    A    +A+  +G+
Sbjct: 760 DGETTIIPGIMEHIERAG---VHSGDSMAVYPPQRLSTTVKEKCLDAAIKISKALQVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+       V+ LE+N +   T     P ++   G +   +    +
Sbjct: 817 INIQFIIREED--VYVLEVNPRASRT----IPFLSKITGITMANIATRCI 860


>gi|330895318|gb|EGH27656.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 651

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWHTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|327396664|dbj|BAK14085.1| urea amidolyase DUR1,2 [Pantoea ananatis AJ13355]
          Length = 1201

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 65/185 (35%), Gaps = 16/185 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++K   GG  +G+ V +    +             +      +++    
Sbjct: 144 CRVAETVGYPVMLKSTAGGGGIGMRVCRDAHELTEAFDTVQRLGQNNFSDAGVFLENYIE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        +  V         ++  +       PA    + + + +   A    +
Sbjct: 204 RARHLEVQIFGDGQGDVIALGVRDCSVQRRNQKVIEETPAPNLPEGMAQALCEAAVALGK 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D L+++ ++LE+N +     G+T      ++    G    +L+ WM
Sbjct: 264 AVNYRSAGTVEFVYDSLNQQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVKWM 312

Query: 293 VEDAS 297
           +E A+
Sbjct: 313 IELAA 317


>gi|307273074|ref|ZP_07554320.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0855]
 gi|306510059|gb|EFM79083.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0855]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|256964979|ref|ZP_05569150.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704]
 gi|256955475|gb|EEU72107.1| carbamoyl-phosphate synthase [Enterococcus faecalis HIP11704]
          Length = 1060

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|315162367|gb|EFU06384.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0645]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +++   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRSLKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|171778241|ref|ZP_02919447.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171282941|gb|EDT48365.1| hypothetical protein STRINF_00287 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 1059

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G+ V  ++                         V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYNVVLVNSNPATIMTDKEIADKVYIEPLTTEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIERAEDRDLFKQLMEELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGIIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++ H
Sbjct: 639 AINLAESLSKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAH 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKVQETIANYTKRLAIGLNCYG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|118474608|ref|YP_892697.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40]
 gi|118413834|gb|ABK82254.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter fetus
           subsp. fetus 82-40]
          Length = 445

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 53/254 (20%), Positives = 91/254 (35%), Gaps = 13/254 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D  F   +G   E+     I     I +    + A AL  DK ++KQV+   G+PV P  
Sbjct: 78  DAIFPG-YGFLSENQNFVEICSKHNIKFIGPSVAAMALMSDKSKAKQVMMRAGIPVVPGS 136

Query: 110 --SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             SI            I  P ++K   GG   G+ V+++++ +      + S        
Sbjct: 137 DGSIQDIDAAKKLAREIGYPIIVKAAAGGGGRGMRVVEREEDLEKSFWSAESEAMSAFGD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L      V         ++          PA I        
Sbjct: 197 GTMYMEKYISNPRHIEVQVLGDEHGNVVHIGERDCSMQRRHQKLIEESPAVILDDKTRAN 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  A +AIG  G    +FL+D    K +++E+N +  +       EM   +G    
Sbjct: 257 LHETAVKATKAIGYAGAGTFEFLYDQKDNKFYFIEMNTR--LQVEHCVSEMC--SGL--- 309

Query: 287 ELLLWMVEDASCLR 300
           +L+ WM+  A   +
Sbjct: 310 DLIEWMIRIAQGEK 323


>gi|32267187|ref|NP_861219.1| carbamoyl phosphate synthase large subunit [Helicobacter hepaticus
           ATCC 51449]
 gi|32263240|gb|AAP78285.1| carbamoylphosphate synthase [Helicobacter hepaticus ATCC 51449]
          Length = 1117

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I         D D +            +  ++   K D    
Sbjct: 29  SGTQAVKTLKNLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIANIITKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++     +LE +     +   +         +   +     +P      
Sbjct: 89  TMGGQTALNVAMKMFEKGMLENITFLGANPEAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +  +++   I  P +I+     +  G  V        +        +  +++LIE+ +
Sbjct: 149 TEKEALEAAKEIGFPLIIRASYTLAGGGSGVAYNIDEFKVVAKNGLETSPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPQNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/260 (13%), Positives = 79/260 (30%), Gaps = 11/260 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V++  KPD     L G                I  T + ++  A   +
Sbjct: 622 FEPIDF-EHVRAVISKEKPDGIIVHLGGQTPLKLAHSLTKINAHIIGTSAKVIDIAEDRE 680

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P               H I  P +++P        + ++  D  +  
Sbjct: 681 KFAQFVNDLGLKQPQNGIAFEKEQAYLVAHKIGFPVLVRPSYVLGGRAMRIVYDDDELKN 740

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            + +  + +    +LI+++++       +  D   D   + +     +  E    S +S 
Sbjct: 741 YMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGKSVYIGGIMEHIEEAGIHSGDSA 797

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             LP+     I  +            +G  G+    +     +  ++ +E+N +   T  
Sbjct: 798 SSLPSINISKILIDEIEQTTAKIALKLGVVGLMNVQYAI--YNENLYLIEVNPRASRT-- 853

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 854 --VPFVSKATGIPLAKVATR 871


>gi|327460200|gb|EGF06537.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1057]
          Length = 1059

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSHKVKDTIAEYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|253582330|ref|ZP_04859553.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium
           ATCC 27725]
 gi|251835869|gb|EES64407.1| carbamoyl-phosphate synthase subunit large [Fusobacterium varium
           ATCC 27725]
          Length = 1068

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  +L   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       +++  T +  +  A   ++        +   P   ++      ++  +
Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEALNIARPKGRAVWDISHGIEIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIEL    +
Sbjct: 701 EIKYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +   +    E+  +     +A+  +
Sbjct: 761 CDGEDILI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEAELLEITKKIAKALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           G+    F+      K++ +E+N       P ++ VS  P
Sbjct: 817 GMMNIQFI--AYEHKLYVIEVNPRSSRTVPYISKVSGVP 853



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 90/303 (29%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+A  +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITADFVEKVIAKERPDSILA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + IL+   +    + I A     D+   R         +     
Sbjct: 88  GMGGQTALNMAVELSEKGILKKYGVKVIGTPIEAIKRGEDRELFREAMEKIGEPIIQSKI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P V++P       G       + +   L++  + +   Q+LIE+
Sbjct: 148 VENLEDGFKVASEIGYPVVVRPAYTLGGTGGGFAYNPKELEDILMKGLALSRVGQVLIEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++ 
Sbjct: 208 SILG--WKEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 SAIKIVNEIGVIGGCNVQFSLHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TRL 324


>gi|139439440|ref|ZP_01772881.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC
           25986]
 gi|133775219|gb|EBA39039.1| Hypothetical protein COLAER_01901 [Collinsella aerofaciens ATCC
           25986]
          Length = 1104

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 39/313 (12%), Positives = 89/313 (28%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ GF+V  ++ +                       +  V+   +PD    
Sbjct: 29  SGAQACKVLKEDGFEVILVNSNPATIMTDPGLADRTYVEPITAEFIERVIKKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +          L+   +      + A     D+             V     
Sbjct: 89  TLGGQTGLNAAVELAKDGTLDKYGVEMIGCDLAAIERGEDRKLFNEAMAEIGLEVARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  +    + +   + Q    +   ++L+E+
Sbjct: 149 AYSVADAEAIAERVGYPCVLRPSFTLGGAGGGIAHAHEELVSIVSQGLELSPAHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         I     +     +      +         L+  +     
Sbjct: 209 SIEGWKEYEMEVMRDHAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDLEYQRMRVAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P + ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILEKIGVETGGSNVQFAVNPQTGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIVNDI 339



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/254 (11%), Positives = 77/254 (30%), Gaps = 10/254 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V+   +PD     L G              + I  T    +  A   ++  +   
Sbjct: 636 EDVMDVIDVERPDGVVVTLGGQTPLKLARMLEESGVNIMGTKPDAIDFAEDRERFAALLD 695

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P                 I  P +++P       G+++    + +   + +++ 
Sbjct: 696 KLGIMYPPAGQATSFEEAEAVAAHIGYPLLVRPSYVLGGRGMMIAYDAEHLRDYMAEAAR 755

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    + ++++++G IE     + D         +   +           ++T + P  
Sbjct: 756 ISPDYPVYLDRFLEGAIESDVDALCDGEEVYIGGILEHIEEAGIHSG---DSATCIPPFS 812

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
               +  +++        A+G RG+    +        V+ +E N +   T     P ++
Sbjct: 813 FSESLQAKLRETTRRIAMALGVRGLVNVQYAI--KGETVYVIEANPRASRT----VPFIS 866

Query: 279 AYAGYSFRELLLWM 292
              G    +    +
Sbjct: 867 KATGVPLAKCAARI 880


>gi|327489732|gb|EGF21522.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1058]
          Length = 1059

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITPEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|281491906|ref|YP_003353886.1| carbamoyl-phosphate synthase, large chain [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375615|gb|ADA65119.1| Carbamoyl-phosphate synthase, large chain [Lactococcus lactis
           subsp. lactis KF147]
          Length = 1064

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   I+ +                       V  ++   +P+       G
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   D             P   +       + +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  +     P     +I   +          + C
Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114
           L G  G +  ++   I  L E+     G   SA+   + R         +          
Sbjct: 90  LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149

Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|254524347|ref|ZP_05136402.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp.
           SKA14]
 gi|219721938|gb|EED40463.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas sp.
           SKA14]
          Length = 1090

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      +V  ++A  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 98

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 158

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T+D    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 218

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 279 IAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334

Query: 291 WM 292
            +
Sbjct: 335 KL 336



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 92/291 (31%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 598 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       ++  +     
Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLARE 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   + C V  
Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVECDVDI 776

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +  +   E++R      +A+   G+
Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGL 836

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     D  +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 837 MNTQFAIQSSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 883


>gi|196228041|ref|ZP_03126908.1| carbamoyl-phosphate synthase, large subunit [Chthoniobacter flavus
           Ellin428]
 gi|196227444|gb|EDY21947.1| carbamoyl-phosphate synthase, large subunit [Chthoniobacter flavus
           Ellin428]
          Length = 1109

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       VG ++   KPD    
Sbjct: 29  SGVQACKALKEEGYEVVLVNSNPATIMTDPEFAHRTYIEPITPEVVGKIIEAEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G              +L+   +    +   A     D+   K+ +   G+ +  S  
Sbjct: 89  TLGGQTALNCSMKLHELGVLQKHNVRMIGAKPEAIHKGEDRQAFKEAMIKIGLDLPRSGT 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      +  + + P +I+P       G  +    +   + + +    +   ++LIE
Sbjct: 149 AHTMEEGRKVAAEIGTMPLIIRPAFTLGGSGGGIAYNKEEFEIIVARGLDLSPVSEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +       
Sbjct: 209 ESLLGWKEFEMEVMRDKADNCVIICSIENVDPMGVHTGDSITVAPAQTLSDREYQNMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SFAVIREIGVETGGSNIQFAIEPNTGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/296 (11%), Positives = 85/296 (28%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL++ GF+   +         D D S  L    L  +   N+                  
Sbjct: 615 ALKELGFETIMVNSNPETVSTDYDTSDKLYFEPLTLEDVLNICEQESENLFGVIVQFGGQ 674

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQ 121
               +   LE   +P   +   +  ++ D+     ++   G+                + 
Sbjct: 675 TPLNLAKGLEEAGVPIIGTSPKSIEIAEDRKLFGAMLDKLGIRQTAGGTAVTEDQAVTAA 734

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ ++  +  +   + ++     G           ++     
Sbjct: 735 NTVGYPVLVRPSFVLGGRGMQLVHTEADLRKYVREAIEAAPGATPNTASNPILVDHFLED 794

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNS-----THVLPAKIPLDIYKEVQRLAFLAHQ 236
             +  +D              E    +          + P  +  ++  E+ +      +
Sbjct: 795 ALEIDVDCISDGQTVVIGAIMEHIEEAGIHSGDSACAIPPFSLKEEVKAEITKATKAMAK 854

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +  +G+    F        V+ LE+N +   T     P ++   G    +L   +
Sbjct: 855 ELHVKGLMNVQFAV--KDDVVYVLEVNPRASRTA----PFVSKAIGVPLPKLAAKI 904


>gi|15673345|ref|NP_267519.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. lactis Il1403]
 gi|22095527|sp|Q9CFV2|CARB_LACLA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|12724347|gb|AAK05461.1|AE006368_5 carbamoylphosphate synthetase [Lactococcus lactis subsp. lactis
           Il1403]
          Length = 1064

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   I+ +                       V  ++   +P+       G
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   D             P   +       + +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  +     P     +I   +          + C
Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEIIDTIVDYTKRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114
           L G  G +  ++   I  L E+     G   SA+   + R         +          
Sbjct: 90  LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149

Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|332362145|gb|EGJ39947.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK49]
          Length = 1059

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|327470856|gb|EGF16312.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK330]
          Length = 1059

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAEIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|291519738|emb|CBK74959.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio
           fibrisolvens 16/4]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 82/255 (32%), Gaps = 9/255 (3%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  V  ++   KPD A     G          +   + I  T +  + +A   +      
Sbjct: 617 NEDVESIVNLEKPDGAIVQFGGQTAIKLTEHLMKIGVPILGTKAEDVDAAEDRELFDEIL 676

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             +        ++       +  + +  P +++P       G+ +   D  I   +   +
Sbjct: 677 EKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMQIAFNDDEIEKFMDIIN 736

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                  +L+++Y+ G E+    + D    +    +   +           + +      
Sbjct: 737 QIAQDHPILVDKYLQGKEIEVDAICDGENILIPGIMEHIERTGIHSG---DSISVYPAHT 793

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I  DI  ++        +A+   G+    F+   +  +V+ +E+N +   T     P ++
Sbjct: 794 ISQDIKDKIVDYTERLAKALHVLGMINIQFI--AMDGEVYVIEVNPRSSRT----VPYIS 847

Query: 279 AYAGYSFRELLLWMV 293
              G    +L    +
Sbjct: 848 KVTGIPIVDLAAKAI 862



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+               +  ++   KPD     
Sbjct: 30  GTQACRSLKEEGMEVCLVNSNPATIMTDKEIADQVYIEPLTVDVLKQIIIKEKPDSLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111
           L G  G +  ++      LE   +    +       + D+   K  +      V     +
Sbjct: 90  LGGQAGLNLGMELAESGFLEEQGVKLIGTTAETIFRAEDRQAFKDTMEKLGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +      +   L      +   ++L+E+ 
Sbjct: 150 NTVEDGIKFTNTIGYPVVLRPAYTLGGSGGGIAHNQTELVEILTNGLRLSRVHEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIDELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|315150764|gb|EFT94780.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0012]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|312127564|ref|YP_003992438.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311777583|gb|ADQ07069.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 1075

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 99/318 (31%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   K D    
Sbjct: 29  SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKEKVDSILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVIPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   ++       +  S++   Q+L+E+
Sbjct: 149 VNSVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGFTLDEIENAITK 340



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 99/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +    L   G K   I         D D S  L    L  +   NV+          
Sbjct: 578 SVHSVY-TLSKLGIKSVIINNNPETVSTDFDTSDMLFFEPLTKEDVLNVIETVQAEGVIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +   P       + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLSIKRPPGFTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++  + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALEIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNDHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I +++        
Sbjct: 756 IEVDAISDGKDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEEKIVEYTLKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 RELECKGLMNVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|307269527|ref|ZP_07550866.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4248]
 gi|306514147|gb|EFM82723.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4248]
 gi|315147411|gb|EFT91427.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4244]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|307289254|ref|ZP_07569210.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0109]
 gi|306499963|gb|EFM69324.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0109]
 gi|315163868|gb|EFU07885.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1302]
          Length = 1066

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEEVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGEIVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQTTIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|257416236|ref|ZP_05593230.1| carbamoyl-phosphate synthase [Enterococcus faecalis AR01/DG]
 gi|257158064|gb|EEU88024.1| carbamoyl-phosphate synthase [Enterococcus faecalis ARO1/DG]
          Length = 1060

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   + Q+   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRQAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257079157|ref|ZP_05573518.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1]
 gi|294779374|ref|ZP_06744775.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           PC1.1]
 gi|256987187|gb|EEU74489.1| carbamoyl-phosphate synthase [Enterococcus faecalis JH1]
 gi|294453503|gb|EFG21904.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           PC1.1]
          Length = 1060

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|78779359|ref|YP_397471.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9312]
 gi|78712858|gb|ABB50035.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9312]
          Length = 1098

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 100/315 (31%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL  AG+++  I+ + +                     +  ++   KPD    
Sbjct: 29  SGTQACKALRKAGYEIILINSNPASIMTDPEVASKTYIEPLTPEIISQIILREKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESDFLKKNNVELIGADLKAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         + + S P +I+P      +G  +    +            +  DQ+LIE
Sbjct: 149 ASNLAEAKEVQKKINSYPLIIRPAFTLGGVGGGIAFNLEEFIELCTTGLEESPRDQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAINPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339



 Score = 39.9 bits (91), Expect = 0.48,   Method: Composition-based stats.
 Identities = 26/178 (14%), Positives = 60/178 (33%), Gaps = 10/178 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++K +  +   + ++   +    +L++QY++       
Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYISEAVKVSPDHPILLDQYLNNAIEIDV 783

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
                      + +     +       S +S   LP+    +     V+    L  Q + 
Sbjct: 784 --DALCDSEGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSESTIDNVKTWTKLIAQKLN 841

Query: 240 CRGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G+    F     +    K+F LE N +   T     P ++   G    +L   +++
Sbjct: 842 VVGLINLQFAVTNLNNKENKLFILEANPRASRT----VPFVSKAIGKPVAKLATQLMQ 895


>gi|77408053|ref|ZP_00784801.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae COH1]
 gi|77173318|gb|EAO76439.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae COH1]
          Length = 1060

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 94/291 (32%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+     +KV+ +E+N + G T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRAGRT----LPFLSKVTHIPMAQVATKVI 860



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|313201619|ref|YP_004040277.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp. MP688]
 gi|312440935|gb|ADQ85041.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp.
           MP688]
          Length = 1069

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ + G++   +         D D              V  ++A  KP        G   
Sbjct: 582 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++ +   +   + ++   ++   +L++++++          
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               DV    + +    +      S  S    P  +   +  E++       +A+G  G+
Sbjct: 762 SDGEDVIIGGIMEHIEQAGVHSGDSACSLP--PYSLTQAMQDELRVQTVQMAKALGVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 820 MNVQFAI--QGDVVYVLEVNPRASRT----VPFVSKACGLQLAKVAAR 861


>gi|253999584|ref|YP_003051647.1| carbamoyl-phosphate synthase large subunit [Methylovorus sp.
           SIP3-4]
 gi|253986263|gb|ACT51120.1| carbamoyl-phosphate synthase, large subunit [Methylovorus sp.
           SIP3-4]
          Length = 1069

 Score = 62.6 bits (150), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                     + V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPVTWKMVEKIIAIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLAKHGVLEKYNVELIGASKEAIDKAEDREKFKTAMTKIGLGSARSSV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q  I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQASIGYPAIIRPSFTMGGSGGGIAYNKEEFLAICERGLEASPTSELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDSKDNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAINPDDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.039,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 85/288 (29%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ + G++   +         D D              V  ++A  KP        G   
Sbjct: 582 AMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVALEKPVGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 642 LKLARDLEKAGVPIIGTSPDAIDRAEDRERFQQMLQELGLKQPPNRTARTPEEAIRLAQE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++ +   +   + ++   ++   +L++++++          
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQAQLERYMREAVKVSNESPVLLDRFLNDALEVDVDAL 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               DV    + +    +      S  S    P  +   +  E++       +A+G  G+
Sbjct: 762 SDGEDVIIGGIMEHIEQAGVHSGDSACSLP--PYSLTQAMQDELRVQTVQMAKALGVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 820 MNVQFAI--QGDVVYVLEVNPRASRT----VPFVSKACGLQLAKVAAR 861


>gi|330981078|gb|EGH79181.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 583

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+   PS  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPPSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|262091722|gb|ACY25312.1| carbamoyl-phosphate synthase large subunit [uncultured
           actinobacterium]
          Length = 1098

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 85/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQ---------IDVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G++V            D D              +  ++   KPD    
Sbjct: 29  SGTQACRVLREEGYRVILANSNPATIMTDPDFADRTYIEPLTVEVLSAIIDREKPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI-------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
            L G    +  ++             E+   ++  +A+A   +K +   +     VP   
Sbjct: 89  TLGGQTALNLAMELFAIGKVGVPGTPELIGANAEAIATAEDREKFKLAMIEIGLKVPRSG 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +        I  P +I+P       G  +    +          + +   ++LIE
Sbjct: 149 VAHNMQEAEKVCLQIGLPIIIRPAYILGGRGTGIAHTPEEFTRLAANGIAASPIGEILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +         ++       
Sbjct: 209 ESIAGWKEYELEVMRDKADNCVIICSIENVDPMGVHTGDSITVAPAMTLSDVEYQVMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                 +     G S   F  +P +     +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AFACIRRVGVETGGSNVQFAVNPKNGDQVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/305 (13%), Positives = 90/305 (29%), Gaps = 38/305 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL +AG++   +         D D S  L    L  +   NV+        +   ++  L
Sbjct: 589 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTREDVMNVIEAESRASQIPPRVIVSL 648

Query: 76  E---------------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                           I  TH   +  A   +K  +         P   + L     +  
Sbjct: 649 GGQTPLKLANLIPSELIAGTHPSSIDLAEDREKWSALCNSLGIAQPPGGTALSYEEALVV 708

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--------SSSWNHGDQLLIEQYV 172
              +  P +++P        + ++  D  +   + +               ++ ++    
Sbjct: 709 AKQVGYPVLVRPSYVLGGRAMQIVHDDAHLQRAMQEIAAAGSLGREGGLSFERPVLIDRF 768

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
                   V          +     +       +S  ++  + P  +   + + V+    
Sbjct: 769 LDDATEIDVDAIRDSVGEVLIGGVMEHVEEAGVHSGDSACAIPPPTLEPWVIEAVESYTR 828

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  QA+G  G+    F        V+ +E N +   T     P +A   G S  ++   +
Sbjct: 829 VIAQALGVIGLINVQFAV--AGNAVYVIEANPRASRT----VPFVAKATGVSLAKVASRV 882

Query: 293 VEDAS 297
           +  AS
Sbjct: 883 MLGAS 887


>gi|89894788|ref|YP_518275.1| hypothetical protein DSY2042 [Desulfitobacterium hafniense Y51]
 gi|89334236|dbj|BAE83831.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1079

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                      ++  +LA  +PD     
Sbjct: 30  GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGILAQERPDALLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +   ++  +  A   +  +   +     +     +
Sbjct: 90  LGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETMLEIGEPLAESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P +++P       G    K ++ +   L +    +   Q L+E+ 
Sbjct: 150 TSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQASPIHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   ++D         +     +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDAMDNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDGE-YQMLRSSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +A+G  G     F  DP SR+   +E+N  P ++  S     +   GY   ++
Sbjct: 269 LKIIRALGVNGGCNVQFALDPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 91/286 (31%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D              V  ++   K D       G   
Sbjct: 580 ALQELGIESIMINNNPETVSTDFDTGDKLYFEPLTLEDVLHIIEKEKADGVLVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  +    +  A   ++     +          +             
Sbjct: 640 INLASPLQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARTIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++    +   L Q+ + +    +L+++Y++G E+    + 
Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVENFAELESYLTQAITLSPEHPILVDRYLEGKEVEVDAVA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D  + V     P    +       S +S  V P +       +++Q       + +  RG
Sbjct: 760 DGEITVI----PGIMEHIERAGVHSGDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+   ++ KV+ +E+N +   T     P ++   G     L
Sbjct: 816 LLNIQFVV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855


>gi|219669223|ref|YP_002459658.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219539483|gb|ACL21222.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1079

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                      ++  +LA  +PD     
Sbjct: 30  GTQACKALREVGIEVILVNSNPATIMTDEQMADRIYLEPLLPQNLEGILAQERPDALLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +   ++  +  A   +  +   +     +     +
Sbjct: 90  LGGQTGLNLAMKLQEEGILERYGVALIGCNAETIYKAEDREAFKETMLEIGEPLAESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P +++P       G    K ++ +   L +    +   Q L+E+ 
Sbjct: 150 TSLEEGLAFTARRGYPVIVRPAYTLGGTGGGFAKNEKELLEVLHRGLQASPIHQCLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   ++D         +     +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDAMDNCITVCNMENIDPVGIHTGDSIVVAPSQTLTDGE-YQMLRSSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +A+G  G     F  DP SR+   +E+N  P ++  S     +   GY   ++
Sbjct: 269 LKIIRALGVNGGCNVQFALDPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 91/286 (31%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   I         D D              V  ++   + D       G   
Sbjct: 580 ALQELGIESIMINNNPETVSTDFDTGDKLYFEPLTLEDVLHIIEKEEADGVLVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  +    +  A   ++     +          +             
Sbjct: 640 INLASPLQKAGVRILGSQVDAIDKAEDRERFAQLLLELGIPQSEGCAATSVSQARAIAGE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++    +   L ++ + +    +L+++Y++G E+    + 
Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVEDLAELEGYLTRAITLSPEHPILVDRYLEGKEVEVDAIA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D  + V     P    +       S +S  V P +       +++Q       + +  RG
Sbjct: 760 DGEITVI----PGIMEHIERAGVHSGDSLAVYPTQSLTPAEIQQIQDYTCRIAKGMEVRG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+   ++ KV+ +E+N +   T     P ++   G     L
Sbjct: 816 LLNIQFVV--VNGKVYVIEVNPRASRT----VPILSKVTGIPLVAL 855


>gi|327535280|gb|AEA94114.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           OG1RF]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315172444|gb|EFU16461.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1346]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D             P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315168886|gb|EFU12903.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1341]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315156134|gb|EFU00151.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0043]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315037128|gb|EFT49060.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0027]
 gi|315169607|gb|EFU13624.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX1342]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D             P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|315027872|gb|EFT39804.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2137]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|313158536|gb|EFR57930.1| carbamoyl-phosphate synthase, large subunit [Alistipes sp. HGB5]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 97/295 (32%), Gaps = 32/295 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ     IL+  ++    +   +   + D+   +         V      
Sbjct: 90  LGGQTGLNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVIESKIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +     ++    I  P V++P       G      ++ +   +  +   +   Q+L+E+ 
Sbjct: 150 MSVEEAVEVAAEIGYPVVLRPAYTLGGTGGGFADNEEQLREMMRHALFLSPVHQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I++   +       ++  +        +    ++ ++  A
Sbjct: 210 IKG-YKEIEFEVMRDHNDTAISICCMENIDPVGVHTGDSIVVAPCQTLTNKEFQMLRDSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
               + +   G     F  DPLS K + +E+N  P ++  S     +  +GY   
Sbjct: 269 LKIIRELKIEGGCNVQFALDPLSFKYYLIEVN--PRVSRSS--ALASKASGYPIA 319



 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 87/289 (30%), Gaps = 29/289 (10%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64
           + +AG++   I         D   S  L    L  +   NV+H            G    
Sbjct: 578 IREAGYEAIIINNNPETVSTDYTTSDKLYFEPLMVEDVMNVIHLEKPKAIVVSLGGQTAI 637

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + I  T    + +A                 P   ++      + +   I
Sbjct: 638 NLAEPLSRLGVPIIGTDCEAIRNAEDRGCFEKIMEELRIPQPEAEAVTDIESGVKAAARI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++  ++ +   L  +   N    +L+++Y+ G EL    + D
Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEVNDDSPVLVDRYIMGKELEVDAICD 757

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +           + +      +      ++          IG  G+ 
Sbjct: 758 GKDVFIPGIMEHVERTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVKLGLRIGIIGLY 814

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+ D  + +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 815 NIQFILDG-NDEVYVIEVNPRSSRT----VPFLSKSTGVPMAHIATQVI 858


>gi|312901879|ref|ZP_07761144.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0470]
 gi|311291072|gb|EFQ69628.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0470]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGEECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|312903464|ref|ZP_07762644.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0635]
 gi|310633340|gb|EFQ16623.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0635]
 gi|315577840|gb|EFU90031.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0630]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|307275823|ref|ZP_07556962.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2134]
 gi|306507515|gb|EFM76646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2134]
 gi|315032024|gb|EFT43956.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0017]
 gi|315144955|gb|EFT88971.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX2141]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|295113098|emb|CBL31735.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Enterococcus sp. 7L76]
          Length = 416

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|293383487|ref|ZP_06629400.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           R712]
 gi|293388858|ref|ZP_06633344.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           S613]
 gi|312907684|ref|ZP_07766675.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 512]
 gi|312910302|ref|ZP_07769149.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 516]
 gi|291079278|gb|EFE16642.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           R712]
 gi|291081783|gb|EFE18746.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           S613]
 gi|310626712|gb|EFQ09995.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 512]
 gi|311289575|gb|EFQ68131.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           DAPTO 516]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|257419441|ref|ZP_05596435.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           T11]
 gi|257422467|ref|ZP_05599457.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           X98]
 gi|257161269|gb|EEU91229.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           T11]
 gi|257164291|gb|EEU94251.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           X98]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257090030|ref|ZP_05584391.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188]
 gi|256998842|gb|EEU85362.1| carbamoyl-phosphate synthase [Enterococcus faecalis CH188]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257087002|ref|ZP_05581363.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6]
 gi|256995032|gb|EEU82334.1| carbamoyl-phosphate synthase [Enterococcus faecalis D6]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAIVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257085039|ref|ZP_05579400.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1]
 gi|256993069|gb|EEU80371.1| carbamoyl-phosphate synthase [Enterococcus faecalis Fly1]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMQHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|257082407|ref|ZP_05576768.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol]
 gi|256990437|gb|EEU77739.1| carbamoyl-phosphate synthase [Enterococcus faecalis E1Sol]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256961781|ref|ZP_05565952.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96]
 gi|256952277|gb|EEU68909.1| carbamoyl-phosphate synthase [Enterococcus faecalis Merz96]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256853271|ref|ZP_05558641.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis
           T8]
 gi|256711730|gb|EEU26768.1| carbamoyl-phosphate synthase large subunit [Enterococcus faecalis
           T8]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256762645|ref|ZP_05503225.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3]
 gi|256959125|ref|ZP_05563296.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5]
 gi|256683896|gb|EEU23591.1| carbamoyl-phosphate synthase [Enterococcus faecalis T3]
 gi|256949621|gb|EEU66253.1| carbamoyl-phosphate synthase [Enterococcus faecalis DS5]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D             P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELEIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|256619209|ref|ZP_05476055.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200]
 gi|256598736|gb|EEU17912.1| carbamoyl-phosphate synthase [Enterococcus faecalis ATCC 4200]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|255972648|ref|ZP_05423234.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1]
 gi|255963666|gb|EET96142.1| carbamoyl-phosphate synthase [Enterococcus faecalis T1]
 gi|323480875|gb|ADX80314.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Enterococcus faecalis 62]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|300860878|ref|ZP_07106965.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TUSoD Ef11]
 gi|300849917|gb|EFK77667.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TUSoD Ef11]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|229545672|ref|ZP_04434397.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX1322]
 gi|307291846|ref|ZP_07571717.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0411]
 gi|229309240|gb|EEN75227.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX1322]
 gi|306497112|gb|EFM66658.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0411]
 gi|315029551|gb|EFT41483.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX4000]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|229549864|ref|ZP_04438589.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           ATCC 29200]
 gi|312951646|ref|ZP_07770541.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0102]
 gi|229305133|gb|EEN71129.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           ATCC 29200]
 gi|310630363|gb|EFQ13646.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0102]
 gi|315152333|gb|EFT96349.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0031]
 gi|315158224|gb|EFU02241.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0312]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|227518905|ref|ZP_03948954.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX0104]
 gi|227073594|gb|EEI11557.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           TX0104]
 gi|315576074|gb|EFU88265.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0309B]
 gi|315580649|gb|EFU92840.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0309A]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|225350763|ref|ZP_03741786.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158219|gb|EEG71461.1| hypothetical protein BIFPSEUDO_02332 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 1126

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|29376268|ref|NP_815422.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           V583]
 gi|81838905|sp|Q834E2|CARB_ENTFA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|29343731|gb|AAO81492.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           V583]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSESGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|18397283|ref|NP_564338.1| CARB (CARBAMOYL PHOSPHATE SYNTHETASE B); ATP binding /
           carbamoyl-phosphate synthase/ catalytic [Arabidopsis
           thaliana]
 gi|9972356|gb|AAG10606.1|AC008030_6 carbamoyl phosphate synthetase large chain (carB) [Arabidopsis
           thaliana]
 gi|14194125|gb|AAK56257.1|AF367268_1 At1g29900/F1N18_6 [Arabidopsis thaliana]
 gi|1477480|gb|AAB67843.1| carbamoyl phosphate synthetase large chain [Arabidopsis thaliana]
 gi|22137066|gb|AAM91378.1| At1g29900/F1N18_6 [Arabidopsis thaliana]
 gi|332193027|gb|AEE31148.1| carbamoyl phosphate synthetase B [Arabidopsis thaliana]
          Length = 1187

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  V+   +PD    
Sbjct: 120 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 179

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   K  + + G+   PS +
Sbjct: 180 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKDAMKNIGLKTPPSGI 239

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 240 GTTLDECFDIAEKIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKSGLAASATSQVLVE 299

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 300 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDY 359

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 360 SIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 415

Query: 290 LWM 292
             +
Sbjct: 416 AKL 418


>gi|115400331|ref|XP_001215754.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624]
 gi|114191420|gb|EAU33120.1| hypothetical protein ATEG_06576 [Aspergillus terreus NIH2624]
          Length = 720

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK +SK ++++ GVP
Sbjct: 104 AKREGCQGIHPGYGFLSENSAFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 163

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P                  I  P +IK +KGG   G+ + +  +     L        
Sbjct: 164 CVPGYHGENQDPHFLEAEADKIKYPVLIKAIKGGGGKGMRIAQSKEEFQAQLQSAKSEAM 223

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               D++ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 284 ATRKDLWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 327


>gi|251779748|ref|ZP_04822668.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
 gi|243084063|gb|EES49953.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E1 str. 'BoNT E Beluga']
          Length = 1069

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/300 (12%), Positives = 95/300 (31%), Gaps = 32/300 (10%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+    +   +           D+             V  ++    P        G
Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++   T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLEKLDISRPKGKGIWSVEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+   
Sbjct: 700 ARKLGFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P++    +I  ++         AIG
Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +G+    F+       ++ +E+N +   T     P ++  +G    ++   ++  A   
Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRT----VPYISKVSGVPIVDIATQVMLGAKLN 869



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  I+ +                       +  V+A  KPD    
Sbjct: 29  SGTQACEALKSEGVEVILINSNPATIMTDKEVADKVYLEPLTLEFIEKVIAKEKPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +  V+      L+   +    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D  + I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P + +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|331016637|gb|EGH96693.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 1073

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEASAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|307277918|ref|ZP_07559002.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0860]
 gi|306505315|gb|EFM74501.1| carbamoyl-phosphate synthase, large subunit [Enterococcus faecalis
           TX0860]
          Length = 1066

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 36  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 95

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 96  LGGQTGLNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 156 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 216 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 275 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 585 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 644

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 645 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 704

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 705 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 764

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 765 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 821

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 822 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 866


>gi|302185421|ref|ZP_07262094.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae 642]
          Length = 1073

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|300703810|ref|YP_003745412.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum
           CFBP2957]
 gi|299071473|emb|CBJ42793.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum
           CFBP2957]
          Length = 1081

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875


>gi|255975700|ref|ZP_05426286.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2]
 gi|255968572|gb|EET99194.1| carbamoyl-phosphate synthase [Enterococcus faecalis T2]
          Length = 1060

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDKEIADHVYIEPITLEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSGSGILDELNVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEQAVAFAKQIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 + Y+ ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 639 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 759 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 816 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 860


>gi|253826206|gb|ACT36390.1| carbamoyl phosphate synthase large subunit [uncultured bacterium
           L11E10]
          Length = 1080

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLDKYNVELIGARREAIMMAEDRELFRVAMAEIGLECPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             + +    I      P +I+P       G  +    +     + +    +   ++L+E+
Sbjct: 149 ARSFEQAVEIQATVGYPTIIRPSFTLGGSGGGIAYNREEFEDIIKRGLELSPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +  + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.2 bits (97), Expect = 0.099,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G++   +         D D              V  ++   KP        G   
Sbjct: 588 ALRADGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       ++  +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQGLVDRLGLKQPPNRIARNDQQALLLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R      +A+   G+
Sbjct: 767 IADKDGQVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAQTQAELRRQVVELARALNVVGL 826

Query: 244 SRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F           V+ LE+N +   T     P ++   G +  ++   
Sbjct: 827 MNTQFAIQAGDDGQDIVYLLEVNPRASRT----VPFVSKATGMALAKIAAR 873


>gi|207723991|ref|YP_002254389.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum MolK2]
 gi|207742901|ref|YP_002259293.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum IPO1609]
 gi|206589199|emb|CAQ36161.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum MolK2]
 gi|206594296|emb|CAQ61223.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) protein [Ralstonia
           solanacearum IPO1609]
          Length = 1081

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLQKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875


>gi|94311131|ref|YP_584341.1| carbamoyl phosphate synthase large subunit [Cupriavidus
           metallidurans CH34]
 gi|93354983|gb|ABF09072.1| carbamoyl-phosphate synthase large subunit [Cupriavidus
           metallidurans CH34]
          Length = 1082

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +         D +              V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAVAVQSRIAQETGTAGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPTDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +       +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 CDGTRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQRNGEDIVYVLEVNPRASRT----VPYVSKATGLSLAKIAAR 875


>gi|66047418|ref|YP_237259.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae B728a]
 gi|289676013|ref|ZP_06496903.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. syringae FF5]
 gi|63258125|gb|AAY39221.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Pseudomonas syringae pv. syringae B728a]
 gi|330937935|gb|EGH41722.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. pisi str. 1704B]
 gi|330969640|gb|EGH69706.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 1073

 Score = 62.6 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPNTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|229817328|ref|ZP_04447610.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM
           20098]
 gi|229785117|gb|EEP21231.1| hypothetical protein BIFANG_02590 [Bifidobacterium angulatum DSM
           20098]
          Length = 1127

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPIATPILERIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S +
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEKAGAESARSQI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSLAEVDKIAEEFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPKTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|146296939|ref|YP_001180710.1| carbamoyl phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145410515|gb|ABP67519.1| carbamoyl-phosphate synthase large subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 1075

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 98/318 (30%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   K D    
Sbjct: 29  SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIERIIQKEKVDSILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGGQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRQLFKQLMIKIGEPVVPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   +        +  S++   Q+L+E+
Sbjct: 149 VNCVEDGLAFAKKIGFPVIIRPAYTLGGTGGGIANNEGEFLEIARRGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/266 (14%), Positives = 95/266 (35%), Gaps = 21/266 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  V+  +K +       G       +   L    I    +      ++ D+ R  +
Sbjct: 619 KEDVLNVIETVKAEGVIVQFGGQ--TAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDK 676

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           +++   +   P       +  +   + +  P +++P       G+ +   D  I   L  
Sbjct: 677 ILNKLNIKRPPGFTCYTLQEALRIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSY 736

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + +  +   +LI++Y+ G E+    + D    +     P    +       S +S  + P
Sbjct: 737 AKN-LNSHPILIDKYIVGKEIEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYP 791

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP 270
           A+     I + +        + + C+G+    F+    + +++ +E+N       P ++ 
Sbjct: 792 ARNISKYIEERIVEYTLKIARELECKGLMNVQFIV--QNEELYVIEVNPRGSRTVPFLSK 849

Query: 271 VSIFPEMAAYA----GYSFRELLLWM 292
           V+  P +        GY  ++L+  +
Sbjct: 850 VTGVPMVELATMVSLGYRLKDLVTTI 875


>gi|206901331|ref|YP_002251484.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
 gi|206740434|gb|ACI19492.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus
           thermophilum H-6-12]
          Length = 1054

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                       V  ++   KPD    
Sbjct: 26  SGTQACKALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVVERIIEKEKPDGIIA 85

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++     ILE   +P   + + + +++ D+   R +       V     
Sbjct: 86  TLGGQTGLNLAMELASAGILEKYGVPLLGASLESISMAEDRELFRKRMEEIGEPVLPSVV 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +  +I  P VI+P       G  +++  +     LL+S   +   Q L+E+
Sbjct: 146 VRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVETFEEFEKALLRSLRLSPVSQALLEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +               +     +                ++ Y+ ++  
Sbjct: 206 SVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHTGDSIVVAPTQTLTDIE-YQMLRTA 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     +  +P  R+ + +E+N  P ++  S     +   G+    L  
Sbjct: 265 SLKIITALKIEGGCNIQYALNPNKREYYVIEVN--PRVSRSS--ALASKATGFPIARLTA 320

Query: 291 WM 292
            +
Sbjct: 321 KI 322



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/297 (14%), Positives = 94/297 (31%), Gaps = 40/297 (13%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNFGE 64
            A+++ G     I         D D S  L    L  +   N++                
Sbjct: 578 KAIKEEGLVSIMINNNPETLSTDFDMSDRLYFEPLTSEDVTNIMEQEEPLGFLSQFGGQT 637

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PSILVNRFTMDSQH 122
              +   LE        +   +  L+ D+ +  + +    +P      I       +   
Sbjct: 638 SINLSKNLEKRGFYLLGTSQKSIDLAEDREKFDRFLKRNKIPRPKGFYIRSLEEAKEVIE 697

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        +I++   + +     +         L ++Q++ G E    ++
Sbjct: 698 EIGFPVLLRPSYVLGGRAMIIVHNMKDLEDYFERKDIIL---PLWMDQFIVGKEAEVDLL 754

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D          P    +  +    S +ST V P      ++  ++   +      +  +
Sbjct: 755 CDGKEVFI----PGVMEHIEKAGIHSGDSTTVFPHYTLSQEVIDKIVDYSTKIALGLEVK 810

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA-----GYSFREL 288
           G+    ++      +V+ LE N       P ++     P +  YA     GYS R+L
Sbjct: 811 GLLNIQYVISSKDEEVYVLEANPRASRTIPYLSKALKLP-LVKYATKVALGYSLRDL 866


>gi|260903820|ref|ZP_05912142.1| carbamoyl-phosphate synthase, large subunit [Brevibacterium linens
           BL2]
          Length = 1091

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56
           SG      L + G +V  I+                    +D  +   ++   +PD    
Sbjct: 29  SGTQACRVLREEGLRVILINSNPATIMTDPDVADATYVEPIDPDIIESIIEKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++      LE   +    + + A     D+ + K +V  CG     S++
Sbjct: 89  TLGGQTALNAAIELHDAGTLEKYGVELIGADVEAIQRGEDRQKFKTIVEECGAESAKSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +     ++ P V++P      LG  +   +  +          +   ++L+E+
Sbjct: 149 CHTIDEALAGAEELNYPVVVRPSFTMGGLGSGMAYDEADLRRIAGAGLGDSMNHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDHKDNVVVICSIENVDPVGVHTGDSITVAPSLTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     +  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDVIRAVGVATGGCNIQYAVDPKTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKMAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|310829435|ref|YP_003961792.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum
           KIST612]
 gi|308741169|gb|ADO38829.1| carbamoyl-phosphate synthase large subunit [Eubacterium limosum
           KIST612]
          Length = 1068

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           CA AL++ G++   +         D D              V  ++   KPD A     G
Sbjct: 580 CAWALKELGYEAIIVNNNPETVSTDFDTSDRLYFEPLTAEDVRSIVETEKPDGAIVQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    + +A   +         +   P   ++      +  
Sbjct: 640 QTAIKLTKHLDEINVGILGTDPKYIDAAEDRELFDDLLERCAIPRPKGETVYTTEEAVKV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        +I+  ++  +   +   +     + +LI++Y+ G E+   
Sbjct: 700 AERLGFPVLLRPSYVLGGQNMIIAYEEADVVEYMNIITEHELENPVLIDKYLMGTEVEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  + +   P  +  +I   +        + +  
Sbjct: 760 AICDGTDYLIPGIMEHIEKAG---VHSGDSISVYPPQTLSQEIKDTIIDYTGKLAKELHV 816

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    ++      +V+ +E+N +   T     P ++         L   +
Sbjct: 817 IGLVNIQYVV--YEGEVYVIEVNPRSSRT----VPYISKVTDIPMVNLATRI 862



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 95/312 (30%), Gaps = 41/312 (13%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ + +                     V  V+   KPD   + 
Sbjct: 30  GTQACKALKAVGLEVILINSNPATIMTDKAMADKIYIEPLTLDVVKRVILLEKPDSILST 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G    +Q           +++   +   +  A    + +         V     +
Sbjct: 90  LGGQTGLTLSMQLAKEGFLDEHNVKLLGANVETIDKAEDRQEFKDMMKEIGEPVIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    +  P +++P       G  +    + +          +   Q+L+E+ 
Sbjct: 150 TTVDDALDFASTMGYPVIVRPAFTLGGTGGGIADNPEQLHEIATHGLRLSPITQILVERG 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +F      ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVMRDSKGNVITVCSMENFDP-VGIHTGDSIVVAPCQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA--Y 280
                A+G  G     F  DP +     +E+N  P ++  S            ++A+   
Sbjct: 269 LKIISALGVEGGCNCQFALDPENFNYAVIEVN--PRVSRSSALASKATGYPIAKIASLIA 326

Query: 281 AGYSFRELLLWM 292
            G+S  E++  +
Sbjct: 327 VGFSLDEIINDI 338


>gi|229086451|ref|ZP_04218623.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44]
 gi|228696768|gb|EEL49581.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-44]
          Length = 1016

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEAHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIADK 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSETLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVVFE--DQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILDECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|319936904|ref|ZP_08011315.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
 gi|319808003|gb|EFW04578.1| carbamoyl-phosphate synthase large subunit [Coprobacillus sp. 29_1]
          Length = 1072

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 110/304 (36%), Gaps = 35/304 (11%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+K+  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALRGLGYKIVLVNSNPATIMTDPETADVTYIEPLNLDRLTQIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++      L+   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSALNLCLELQEAGVLDKYNVKVLGVQVDAIERGEDRLEFKKEMNKLGIEMAKSEI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N      +    +  P V++P       G  ++   + +   + +    +   Q LIE+
Sbjct: 149 ANTVEHALEIAEDLGYPVVVRPAYTMGGAGGGLVYNVEELKTVVSRGLQASLVHQCLIEE 208

Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G E     ++ DA  ++  +   ++          S  S  +L   I  ++   ++ 
Sbjct: 209 SILGWEELEVEIVRDAKGNMITVCFIENIDPLGVHTGDSFCSAPML--TISQEVQDRLKD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            AF   +++G  G +   F  DP+S ++  +EIN +   T  S     +   G+    L+
Sbjct: 267 QAFRIVESVGVIGGTNVQFAHDPVSDRIAVIEINPR---TSRSS-ALASKATGFPIA-LV 321

Query: 290 LWMV 293
             M+
Sbjct: 322 SAML 325



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/298 (15%), Positives = 95/298 (31%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   Q     + I  T    +  A   D   +        +P     +     ++    
Sbjct: 641 LNLAAQLKKNGVNILGTTPETIDMAEDRDLFNAMMEKLEIPMPESGMAVNVEEALEIAKR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  ++S+   +  +        +LI+++++          
Sbjct: 701 IGYPLMVRPSYVLGGRGMEVVYDNESLEQYMKAAVGVTPDRPILIDRFLNN---AMECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T + VP    +       S +S  +LP   IP+   + ++       + +  RG
Sbjct: 758 DAISDGTNVFVPAVMEHIELAGIHSGDSACILPSKHIPMRHLETIKEYTKKIAKEMNVRG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +       KV+ LE N +   T     P ++     +  ++   +V      R
Sbjct: 818 LMNMQYAI--ADDKVYVLEANPRASRT----VPLVSKVCNINMVKIATDIVTSELTGR 869


>gi|302853472|ref|XP_002958251.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f.
           nagariensis]
 gi|300256439|gb|EFJ40705.1| hypothetical protein VOLCADRAFT_77870 [Volvox carteri f.
           nagariensis]
          Length = 1176

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L+  G++V  ++ + +                        +LA  +PD    
Sbjct: 108 SGTQACKSLKKEGYRVILLNSNPATIMTDPGMADRTYVGPMTPELAEQILAKERPDAILP 167

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G    +    + IL    I    + + +   + D+   KQ ++  G+    S  
Sbjct: 168 TMGGQTGLNLAKTLAERGILAKYGIELIGAKLPSIDRAEDRELFKQSMTRIGLKCAKSAT 227

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +  +   P +++P       G  +      +   +    + +   Q+L+E
Sbjct: 228 ATTLEEALTIAADIGKYPIIVRPAFTLGGTGGGIAYNIDELKEIVTGGLTASMTSQVLVE 287

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          ++ +    
Sbjct: 288 QSLLGWKEFELEVMRDLNDNCMIVCSIENVDPMGVHTGDSITVAPSQTLTDKELQRLRDA 347

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S      +P   ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 348 AIAIIREMGVECGGSNVQMAVNPEDGEMVIIEMN--PRVSRSS--ALASKATGFPIAKMA 403

Query: 290 LWM 292
             +
Sbjct: 404 AKL 406



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 34/278 (12%), Positives = 80/278 (28%), Gaps = 26/278 (9%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              F+   +     V  V+   +P+       G       +     L   P   +    +
Sbjct: 692 RLYFEPITV---EDVLNVIEAERPEGVIVQFGGQTPLKIAMDLDKALKANPIPAASGNGN 748

Query: 88  ALSM-------------DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
                            D+        +   P   S        +    +  P +I+P  
Sbjct: 749 VCVWGTSPESIDIAEDRDRWMELLTKLNIRQPAGGSARSEEEAFEKASKLGYPVMIRPSY 808

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                 + ++  ++ +   +  +   +    +LI++Y+D   +   V      D   +  
Sbjct: 809 VLGGRAMEILYSNEDLKRYVTFAVEVDPERPVLIDKYLD-RAVELDVDALCDKDGNVVIA 867

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
              +       +S  ++  +    IP  +  E++       +A+   G+    F      
Sbjct: 868 GIMEHIEQAGIHSGDSACSLPTQTIPPKVLDEIRSWTISVAKALNVVGLINIQFAV--QD 925

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
              + +E N +   T     P +A   G+    +  LL
Sbjct: 926 DVPYIIEANPRASRT----VPFVAKAVGHPIAKYASLL 959


>gi|33861382|ref|NP_892943.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33633959|emb|CAE19284.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 1099

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 40/315 (12%), Positives = 95/315 (30%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL  AG+++  ++ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRKAGYEIVLVNSNPASIMTDPEIANKTYIEPLTPEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            + G    +  V+              I A   +++K   +++       +  ++     
Sbjct: 89  TMGGQTALNLAVKLSESDFLTNNNVELIGADLKAINKAEDRKLFKESMENINVNVCPSGI 148

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASDLFEAREVSKQINSYPLIIRPAFTLGGVGGGIAYNLEEFNDLCKSGLDESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAVNPKNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 64/180 (35%), Gaps = 8/180 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P V++P        + ++K    +   + ++   +    +L++QY+    +   
Sbjct: 726 ANNIGFPLVVRPSYVLGGRAMEIVKDKNDLSRYIKEAVKVSPDHPILLDQYLSN-AIEID 784

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V        + +     +       +S  ++  +    +  +  + V++   L    +  
Sbjct: 785 VDALCDKTGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSQETIETVKKWTKLIANRLNV 844

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
            G+    F     S +   +F LE N +   T     P ++   G    +L   +++ +S
Sbjct: 845 VGLINLQFAIRNHSNEENQLFILEANPRASRT----IPFVSKAIGKPVAKLATQLMQGSS 900


>gi|226354884|ref|YP_002784624.1| carbamoyl phosphate synthase large subunit [Deinococcus deserti
           VCD115]
 gi|259585678|sp|C1CXR4|CARB_DEIDV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226316874|gb|ACO44870.1| putative Carbamoyl-phosphate synthase large chain (Carbamoyl-
           phosphate synthetase ammonia chain) [Deinococcus deserti
           VCD115]
          Length = 1029

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              V  ++A  KPD    
Sbjct: 29  SGTQALKALRGEGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVEKIIALEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  ++      LE   +    +G+ A     D+   +  +   GV       
Sbjct: 89  TLGGQTALNLAMELHERGTLEKYGVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++ Q  I  P VI+P       G  +    +            +    +L+E+
Sbjct: 149 VHSMEEAVEYQKEIGLPIVIRPSFTLGGTGGGIAHTYEEFLAITEGGLRDSPVTSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +         ++  +   + 
Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRNQS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAIIREIGVATGGSNIQFAVNPDNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|182412502|ref|YP_001817568.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
 gi|177839716|gb|ACB73968.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
          Length = 1095

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +              DV          +  ++A  +P     
Sbjct: 29  SGTQACKALKEEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEVLEKIIATERPSALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       L    +    +   A A   D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNLSMDLHRTGVLARYGVEMIGAKPEAIAKGEDRELFKQAMLKIGLDVAKSRT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +      ++ L   P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VRSMAEAREAAEELAMFPLIIRPSFTLGGSGGGIAYNKEEFERIVANGLDLSPVHEVLVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +F    +      +          +       
Sbjct: 209 ECLLGWKEFEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITVAPAMTLTDKEYQVMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  DP++ ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SFAVIREIGVETGGSNIQFSVDPVTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 87/293 (29%), Gaps = 29/293 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  +    K D       G   
Sbjct: 606 ALREAGYETVMVNSNPETVSTDYDTSDRLYFEPLTLEDVIEIYQQEKCDGVIVQFGGQTP 665

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +           I  T    +  A       +         P   + L     +   H 
Sbjct: 666 LNLAAALKANGANIIGTSPESIEVAEDRKLFAAILNKIGLRQPANRTALSEAEALTFAHE 725

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ ++  +      + Q+     G  +LI+++++          
Sbjct: 726 VGFPVLLRPSFVLGGRGMFIVYSEAEFKAVIRQAFDVMPGKPVLIDKFLEDAIELDVDCI 785

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     +   +   +   +S   +  + P  +P ++ + V++      + +   G+
Sbjct: 786 SDGTTSVIGGM--LEHIEFAGVHSGDAAMVMPPHTLPAEMLERVRQATHALARELNVIGL 843

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               F        ++ LE+N +   T     P +A   G    +L   ++  A
Sbjct: 844 MNVQFAI--KDGDLYVLEVNPRASRT----VPFVAKAIGVPLAKLAAKVMTGA 890


>gi|297539391|ref|YP_003675160.1| urea carboxylase [Methylotenera sp. 301]
 gi|297258738|gb|ADI30583.1| urea carboxylase [Methylotenera sp. 301]
          Length = 1215

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 61/185 (32%), Gaps = 16/185 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++K   GG  +G+ +I     +          +  +      Y++    
Sbjct: 144 HLNAEKIGYPVMLKSTAGGGGIGMQLIWSADELNAAFESVQRLSRANFKSTGIYLEKYVQ 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
               +           V         ++  +       P   I  ++ K +   A     
Sbjct: 204 AARHIEVQIFGDGLGKVIALGERDCSVQRRNQKVIEETPAPHISDEVRKSLSDTAVKLGC 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D  S + ++LE+N +     G+T +          G    +L+ WM
Sbjct: 264 ALNYRSAGTVEFVYDNDSGQFYFLEVNTRLQVEHGVTEL--------VTGV---DLVEWM 312

Query: 293 VEDAS 297
           +  A+
Sbjct: 313 IRIAA 317


>gi|296133333|ref|YP_003640580.1| carbamoyl-phosphate synthase, large subunit [Thermincola sp. JR]
 gi|296031911|gb|ADG82679.1| carbamoyl-phosphate synthase, large subunit [Thermincola potens JR]
          Length = 1074

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       V  ++   KPD     
Sbjct: 30  GTQACRALKEEGLEVVLVNSNPATIMTDANIADRVYIEPLTADFVARIIKKEKPDGLLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  V    + IL+   +    + +     + D+   + +++     +P    +
Sbjct: 90  LGGQVGLNIAVELAERGILQEEGVALLGTPLETIKKAEDREMFRNMMNEIKEPIPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    + +     +    +   Q LIE+ 
Sbjct: 150 DNVDDAVVFAERIGFPVIVRPAYTLGGTGGGIANNVEELKAITTRGLKMSMIKQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 VAGW-KEIEYEVIRDSNDNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRAAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  +P S +   +E+N  P ++  S     +   G+   ++   
Sbjct: 269 LKIIRALGIEGGCNVQFALNPNSFEYIVIEVN--PRVSRSS--ALASKATGFPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 92/290 (31%), Gaps = 32/290 (11%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64
           L + G +   I         D D S  L    L P+   N++             G    
Sbjct: 588 LREEGIETIIINNNPETVSTDFDTSDRLYFEPLIPEDVLNIIEKEKPVGVVVQFGGQTAI 647

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + I  T    +  A   DK            P   +        +    I
Sbjct: 648 NLAEPLAQAGVNILGTAVKYIDMAEDRDKFDQLLQDLGIPKPPGRTATSVEGAQEIAEEI 707

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++     +   +  + + +    +L+++Y+ G E+    + D
Sbjct: 708 GFPVLVRPSYVLGGRAMEIVYNQDELLEYMKSAVNVSPKHPVLVDKYLVGKEIEVDAISD 767

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  V PA+   + + ++V        +A+  +G+
Sbjct: 768 GEDVLI----PGIMEHIERAGVHSGDSIAVYPARSLPENLVRDVVDYTTKLARALHVKGL 823

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++      +++ LE+N +   T     P ++   G     L   M+
Sbjct: 824 INIQYVLHE--DRIYVLEVNPRSSRT----VPYISKITGVPMVNLATKMI 867


>gi|293607010|ref|ZP_06689354.1| carbamoyl-phosphate synthase, large subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292814607|gb|EFF73744.1| carbamoyl-phosphate synthase, large subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 1080

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 94/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHNGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAVEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +    V+     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEFEMVVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + G++   +         D D S 
Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHATEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  +  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                P ++   G      L  +   A   R
Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|299066488|emb|CBJ37678.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum CMR15]
          Length = 1081

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETNTGGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALHEDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQRGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875


>gi|329769961|ref|ZP_08261359.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325]
 gi|328837565|gb|EGF87191.1| carbamoyl-phosphate synthase large subunit [Gemella sanguinis M325]
          Length = 1058

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  V+   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKVIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         +L+   +    + + +   + D+   R+     +  VP    I
Sbjct: 90  LGGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 TTVEEAYEFVREIGYPVIVRPAFTMGGTGGGICYNDKDLEEIVSSGLHYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPESFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 90/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++ H  P        G   
Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTQEDVMAIINHENPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    + +A   DK            P+  +       + +   
Sbjct: 640 INLADKLEKYGVKILGTALEEIDNAEDRDKFEELLRKLDIPQPLGKTAFDVETAVQNAKE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +        +L ++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEESELRRYMKTAVKLTPEHPVLTDRYLIGREIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +     +++        + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEREKLIEYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
               ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858


>gi|308234824|ref|ZP_07665561.1| carbamoyl-phosphate synthase large chain [Gardnerella vaginalis
           ATCC 14018]
          Length = 582

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  KPD    
Sbjct: 29  SGTQACRVLHEEGIRVILVNSNPATIMTDPELADATYIEPIDTAILERIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      IL+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMDLGRAGILKKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P      LG  +    + +         ++  +++LIE+
Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNQEELHRIAGAGIHYSPTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   S D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDSKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPRTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|311114642|ref|YP_003985863.1| carbamoyl-phosphate synthase large subunit [Gardnerella vaginalis
           ATCC 14019]
 gi|310946136|gb|ADP38840.1| carbamoyl-phosphate synthase, large subunit [Gardnerella vaginalis
           ATCC 14019]
          Length = 1131

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  KPD    
Sbjct: 29  SGTQACRVLHEEGIRVILVNSNPATIMTDPELADATYIEPIDTAILERIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  +      IL+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMDLGRAGILKKYNVELIGASLEAIDRGEDRELFKKVVEKAGAESAKSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P      LG  +    + +         ++  +++LIE+
Sbjct: 149 AHSIEEVDKIVETLGYPVVVRPSFTMGGLGSGIAHNQEELHRIAGAGIHYSPTNEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   S D   +  P  +     +      +          +  K     
Sbjct: 209 GIEGWKEFELELMRDSKDNVVVVCPIENVDPVGVHTGDSITVAPCFTLTDREYQKMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPRTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|226313358|ref|YP_002773252.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC
           100599]
 gi|226096306|dbj|BAH44748.1| carbamoyl-phosphate synthase large chain [Brevibacillus brevis NBRC
           100599]
          Length = 1070

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 95/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   I+ +                       V  +L   KP+       G   
Sbjct: 579 ALREAGYEAVIINNNPETVSTDFNTSDRLYFEPLYIEDVMNILDVEKPEGVIVQFGGQTA 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    + +A + +K  +         P   ++      + +   
Sbjct: 639 INLADKLTARGIKILGTSLENIDAAENREKFEALLRELEIAQPPGKTVTSVDQAVVAAEG 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++     +   + ++   N    +L+++Y+ GIE     + 
Sbjct: 699 LGFPVLVRPSYVLGGRAMEIVYNQPELLEYMEKAVKVNPDHPVLVDRYMVGIEAEVDAIC 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +   I  E+  +     +A+  +G+
Sbjct: 759 DGENVLIPGIMEHIERAG---VHSGDSIAVYPPQSLSQAIKDELIDMTTKLARALQIKGL 815

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      + + +E+N +   T     P ++   G     +    +
Sbjct: 816 LNIQFVI--YKDRPYVIEVNPRSSRT----VPFLSKVTGIPMANIATKAI 859



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  I+ +                       V  V+   KPD     
Sbjct: 30  GTQACEALKEEGMEVVLINSNPATIMTDTNMADKVYIEPITPEFVARVIRQEKPDGLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V          E +++  T    +  A   D  RS        VP    +
Sbjct: 90  LGGQTGLNMAVALSEAGVLEQENVKLLGTKLESIKQAEDRDLFRSLMNELGEPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  +   ++++   +     ++   Q LIE+ 
Sbjct: 150 STIEEAVDFANEIGYPIIVRPAYTLGGTGGGICDDEETLREIVASGLKYSPITQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAG-MKEIEYEVMRDANDNCIVVCNMENIDPVGVHTGDSIVVAPSQTLADREYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     +  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALGIEGGCNVQYALDPHSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|103486474|ref|YP_616035.1| carbamoyl phosphate synthase large subunit [Sphingopyxis alaskensis
           RB2256]
 gi|98976551|gb|ABF52702.1| carbamoyl-phosphate synthase large subunit [Sphingopyxis alaskensis
           RB2256]
          Length = 1106

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++A  +PD    
Sbjct: 29  SGTQAIKALKEEGYRIVLVNSNPATIMTDPDLADATYVEPITPEIVAKIIAKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L    +    +   A   + D+ + ++ +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLAKYGVEMIGAKAEAIDKAEDRQKFREAMDRIGLESARSGI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLEEAFAVLERTGLPSIIRPSFTLGGTGGGIAYNREEFEQIVRGGLIASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDAKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 53/317 (16%), Positives = 105/317 (33%), Gaps = 51/317 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             ALE+AG++   I         D D S 
Sbjct: 594 IVILGGGPN-------RIGQGIEFDYCCCHACFALEEAGYETIMINCNPETVSTDYDTSD 646

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL----------------LEIPYTHSGILA 86
            L    L  +    +LH    +  LV  I++                 + I  T    + 
Sbjct: 647 RLYFEPLTAEDVLEILHVEMSKGELVGVIVQFGGQTPLKLAQALSDAGIPILGTSPDAID 706

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++  +         P           +     I  P + +P        + ++  
Sbjct: 707 LAEDRERFAALVNKLGLKQPENGIARSREEAIAVAARIGYPVLTRPSYVLGGRAMEIVDD 766

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +LI++Y  D IE+    + D +  V    +   +       
Sbjct: 767 QAQLENYIETAVQVSGTSPVLIDRYLRDAIEVDVDALCDGTDVVVAGVLQHIEEAG---V 823

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P DI  E++R      +A+G RG+    +       +V+ +E+N +
Sbjct: 824 HSGDSACSIPPYSLPADIIAEIERQTDALARALGVRGLMNVQYAV--KDGEVYLIEVNPR 881

Query: 266 PGMTPVSIFPEMAAYAG 282
              T     P +A   G
Sbjct: 882 ASRT----VPFVAKAVG 894


>gi|225163608|ref|ZP_03725915.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
 gi|224801776|gb|EEG20065.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
          Length = 1133

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     +  ++   KP     
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPEFADVTYIEPLTVEMLEKIIETEKPSALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +Q      L+   +    +   A A   D+   KQ +   G+ V  S  
Sbjct: 89  TLGGQTALNLSMQLHEKGILQKHGVEMIGAKPAAIAKGEDRELFKQAMLKIGLDVARSRT 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++     ++ + + P +I+P       G  +    +     +      +   ++L+E
Sbjct: 149 VKSMDAARAAAEEIGNYPLIIRPSFTLGGSGGGIAYNKEEFEQIVANGLDLSPVHEVLVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +F    +      +          +       
Sbjct: 209 ECLLGWKEYEMEVMRDHKDQCVVICSIENFDPMGVHTGDSITVAPAMTLTDKEYQVMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SFAVIREIGVETGGSNIQFSIDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 84/289 (29%), Gaps = 29/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    + D A     G   
Sbjct: 644 ALREIGYESVMVNSNPETVSTDYDTSDRLYFEPLTLEDVLEIYQQEQCDGAIVQFGGQTP 703

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A       +     +   P   + +     +     
Sbjct: 704 LNLASALKANGVNIIGTSPESIEIAEDRKLFAAILHKLNLQQPANRTAMNETEALVFAKE 763

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ ++  +      + Q+        +LI+++++          
Sbjct: 764 VGFPVLLRPSFVLGGRGMFIVYNEDEFKAVIRQAFEVMPDKPVLIDKFLEDAIELDVDCI 823

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     +   +   +   +S   S  + P  +   + + V++      + +   G+
Sbjct: 824 SDGTTSVIGGM--LEHIEFAGVHSGDASMVMPPHTLGRAMLETVRKATHALARELNVIGL 881

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F       +++ LE+N +   T     P +A   G    +L   +
Sbjct: 882 MNIQFAI--KDNELYVLEVNPRASRT----VPFVAKAIGVPLAKLAAKI 924


>gi|198282925|ref|YP_002219246.1| carbamoyl-phosphate synthase large subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218666972|ref|YP_002425128.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247446|gb|ACH83039.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218519185|gb|ACK79771.1| carbamoyl-phosphate synthase, large subunit [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 1079

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGCRVILVNSNPATIMTDAQTADATYIEPVEWQTVARIIAMERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G        D   + +LE   +    + + A   + D+   +         V     
Sbjct: 89  TMGGQTALNCALDLHREGVLEQYGVKLIGASVEAIREAEDRGLFKKAMEEIGLEVARSAF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +    +       +    +   ++LIE+
Sbjct: 149 GHDMEGARQIAEDIGFPVIIRPSFTLGGTGGGIAYNREEFEDIAARGLEASPTHEILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVVRDRADNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDREYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRRIGVDTGGSNVQFAVNPEDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 92/288 (31%), Gaps = 28/288 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ GF+   +         D D              V  ++A  KP        G   
Sbjct: 586 ALQEDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPHGVIVQFGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P           +     
Sbjct: 646 LKLANDLEAAGVPIIGTTPDSIDLAEDRERFQQLLQRLDLRQPENAIARSAPEALSKARA 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +   +L++   ++   +L++++++   L   V  
Sbjct: 706 LGYPLVVRPSYVLGGRAMRIVYGEDDLQRYMLEAVRISNDQPILLDRFLN-DALEVDVDA 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A      I     +       +S  ++  + P  +   I  E++R       A+G  G+
Sbjct: 765 VADSGQQVIVAGIMEHIEQAGVHSGDSACCLPPYSLSPAIQDEIRRQTVELALALGVVGL 824

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F     + +++ LE+N +   T     P ++   G+   ++   
Sbjct: 825 MNCQFAV--QNERIYVLEVNPRASRT----VPFVSKATGWPLAKIASR 866


>gi|152990294|ref|YP_001356016.1| carbamoyl phosphate synthase large subunit [Nitratiruptor sp.
           SB155-2]
 gi|151422155|dbj|BAF69659.1| carbamoylphosphate synthase, large subunit [Nitratiruptor sp.
           SB155-2]
          Length = 1084

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 86/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVG-LVLAHLKPDLAFN 56
           SG      L+  G++V  I+                    +   V   ++   K D    
Sbjct: 29  SGTQAVKTLKSLGYRVVLINSNPATIMTDPGFADRTYIEPITEDVVYKIIQQEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +L+ +E        +         +   +     +P      
Sbjct: 89  TMGGQTALNVAMSMYEKGMLDGVEFLGAKPQAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M++   I  P +I+     +  G  V        +   +    +  +++LIE+ +
Sbjct: 149 SMEEAMEAAAQIGFPLIIRASYTLAGGGSGVAYNIDEFKVLAAKGLEASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKEDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 90/264 (34%), Gaps = 12/264 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID+   V  V+    P        G               +I  T + ++  A   +
Sbjct: 615 FEPIDL-EHVRQVIKEENPSGVIVHFGGQTPLKLAKPLTALGAKIVGTSAKVIDLAEDRE 673

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K  +    +    P   +       +     I  P +++P        + ++  +  +  
Sbjct: 674 KFSTFVAKNGLKQPPNGTAFTKEDALKIADEIGYPVLVRPSYVLGGRAMRIVYNENELKE 733

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            + ++ S +H   +LI++++D       +  DA  D T + +     +  E    S +S 
Sbjct: 734 YMDEAVSVSHESPVLIDKFLD---HAIELDVDAISDGTNVYIGGIMQHIEEAGIHSGDSA 790

Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             LP     + I  EV+         +G +G+    +       +V+ +E+N +   T  
Sbjct: 791 CSLPTVSIDEAILHEVENQTKKIALGLGVKGLLNIQYAI--YKDEVYLIEVNPRASRT-- 846

Query: 272 SIFPEMAAYAGYSFRELLLW-MVE 294
              P ++   G    ++    M++
Sbjct: 847 --VPFVSKATGVPMAKVATRVMIK 868


>gi|148553362|ref|YP_001260944.1| carbamoyl phosphate synthase large subunit [Sphingomonas wittichii
           RW1]
 gi|148498552|gb|ABQ66806.1| carbamoyl-phosphate synthase large subunit [Sphingomonas wittichii
           RW1]
          Length = 1110

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIVLVNSNPATIMTDPEMADATYVEPITPEIVARIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE        +   A   + D+++ +Q +   G+    S  
Sbjct: 89  TMGGQTALNTALALFNDGTLEKYGCQMIGADAEAIDKAEDRLKFRQAMDKIGLESPRSDV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +          +      +   ++LIE+
Sbjct: 149 AHTLDEALRVLDYVGLPAIIRPSFTMGGTGGGIAYNKDEFVKIVTGGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/326 (13%), Positives = 99/326 (30%), Gaps = 51/326 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 593 IVILGGGPN-------RIGQGIEFDYCCCHACFALADAGYETIMVNCNPETVSTDYDTSD 645

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
            L    L  +    +LH    +  L   I++                 +  + +      
Sbjct: 646 RLYFEPLTAEDVLEILHVEQSKGTLKGVIVQFGGQTPLKLAQELEDAGIPILGTSPDAID 705

Query: 103 CGVPVCPSI----------------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                                          +     +  P +++P        + +++ 
Sbjct: 706 LAEDRERFAALVGELGLSQPRNGIARSREEALAVAERVGYPVLMRPSYVLGGRAMEIVED 765

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +LI+QY  D IE+    + D    V    +   +       
Sbjct: 766 PSQLDQYISTAVQVSGDSPVLIDQYLRDAIEVDVDAICDGDDVVVAGVLQHIEEAG---V 822

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P +I  E++R      +A+  RG+    +       +V+ +E+N +
Sbjct: 823 HSGDSACTLPPYSLPKEIIAEIERQTDALARALKVRGLMNVQYAV--KDGEVYLIEVNPR 880

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P +A   G    ++   
Sbjct: 881 ASRT----VPFVAKAIGQPIAKIAAR 902


>gi|17546240|ref|NP_519642.1| carbamoyl phosphate synthase large subunit [Ralstonia solanacearum
           GMI1000]
 gi|22095509|sp|Q8XZ83|CARB_RALSO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|17428537|emb|CAD15223.1| probable carbamoyl-phosphate synthase large chain
           (carbamoyl-phosphate synthetase ammonia chain) protein
           [Ralstonia solanacearum GMI1000]
          Length = 1081

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K+ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLEKYNVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQAQIARETSSGGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPEDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHDLGLRQPPNRTARAEDEALKLADE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVIG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875


>gi|113476462|ref|YP_722523.1| carbamoyl phosphate synthase large subunit [Trichodesmium
           erythraeum IMS101]
 gi|110167510|gb|ABG52050.1| carbamoyl-phosphate synthase large subunit [Trichodesmium
           erythraeum IMS101]
          Length = 1076

 Score = 62.2 bits (149), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + GF+V  ++ + +                     +  V+A  +PD    
Sbjct: 29  SGTQACKALREEGFEVVLVNSNPATIMTDPEIAECTYIEPLTPELIEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +          L    +    + + A  ++ D+   K+ +   G+ VCPS  
Sbjct: 89  TMGGQTALNIAVSLAKNGTLAKYGVDLIGAKLPAIEMAEDRQLFKEAMGRIGIQVCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +Q + + P +I+P       G  +    +   +        +   Q+L+E
Sbjct: 149 ASNWEEAKAIAQKIGTYPLIIRPAFTLGGTGGGIAYNQEEYEVMAQGGIDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDLADNVVIICSIENIDPMGIHTGDSVTVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F   PL+  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIKIIREIGVETGGSNIQFAVHPLNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKMA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 40.2 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 57/171 (33%), Gaps = 7/171 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P V++P        + ++  DQ +   +  +        +LI+++++   +   
Sbjct: 709 AHTIGYPVVVRPSYVLGGRAMEIVYSDQELERYMKFAVQVEPEHPILIDKFLNN-AVEVD 767

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A      +     +       +S  ++  +    +     + +++      +A+  
Sbjct: 768 VDAIADSTGRVVIGGIMEHIEEAGIHSGDSACSIPYQTLTSAAVETIRQWTVALAKALNV 827

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    F        V+ LE N +   T     P ++   G    ++   
Sbjct: 828 IGLMNIQFAV--QGETVYILEANPRASRT----VPFVSKAIGIPLAKIASR 872


>gi|297845912|ref|XP_002890837.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297336679|gb|EFH67096.1| hypothetical protein ARALYDRAFT_473200 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1183

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  V+   +PD    
Sbjct: 116 SGTQACKALREEGYEVILINSNPATIMTDPETANRTYIAPMTPELVEQVIEKERPDALLP 175

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   K+ + + G+   PS +
Sbjct: 176 TMGGQTALNLAVALAESGALEKYGVELIGAKLGAIKKAEDRELFKEAMKNIGLKTPPSGI 235

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N         + +   P +I+P       G  +    +          + +   Q+L+E
Sbjct: 236 GNTLDECFDIAERIGEFPLIIRPAFTLGGTGGGIAYNKEEFESICKAGLAASVTSQVLVE 295

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 296 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDREYQRLRDY 355

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 356 SIAIIREIGVECGGSNVQFAVNPVDGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 411

Query: 290 LWM 292
             +
Sbjct: 412 AKL 414


>gi|228992621|ref|ZP_04152547.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides
           DSM 12442]
 gi|228766953|gb|EEM15590.1| Carbamoyl-phosphate synthase large chain [Bacillus pseudomycoides
           DSM 12442]
          Length = 1018

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93
             V  ++   +PD     L G  G +  V+           +EI  T    +  A   D 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            R+     +   P    I       +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|228998667|ref|ZP_04158254.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock3-17]
 gi|228761135|gb|EEM10094.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock3-17]
          Length = 1018

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/259 (15%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDK 93
             V  ++   +PD     L G  G +  V+           +EI  T    +  A   D 
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            R+     +   P    I       +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDEAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|229006169|ref|ZP_04163855.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock1-4]
 gi|228755010|gb|EEM04369.1| Carbamoyl-phosphate synthase large chain [Bacillus mycoides
           Rock1-4]
          Length = 1018

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHADHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSAKLKEQIIENTIALGRGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDEVYVIEVNPRASRT----VPFLSKITGVPMANIATKVI 806



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 89/259 (34%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS +++      +    I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQELNEPTPPSEIIHTLDGAYEFVKEIGYPVIVRPAFTLGGTGGGICHNEKELIET 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|187779560|ref|ZP_02996033.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC
           15579]
 gi|187773185|gb|EDU36987.1| hypothetical protein CLOSPO_03156 [Clostridium sporogenes ATCC
           15579]
          Length = 1068

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KP+       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVCDKLYFEPITEEDVLNIVEKEKPNGIILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNIPTLGTTADQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AKKLGFPVLVRPSYVLGGQGMKITHDEKELVYYLSNAFQKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +    +  S +S  + P +    DI +++          IG
Sbjct: 760 AISDGEDVLI----PGIMEHLERAEVHSGDSITMYPTQNVSKDIKEKILEYTKRLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFQGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  I+ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEGLKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTAEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+      L+   +    + I +     D+   + V+S    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYDKGILKKYGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTDMENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILTLGLQLSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGW-KEIEYEVMRDNRGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SINIINSVGIEGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|182416339|ref|YP_001821405.1| carbamoyl phosphate synthase large subunit [Opitutus terrae PB90-1]
 gi|177843553|gb|ACB77805.1| carbamoyl-phosphate synthase, large subunit [Opitutus terrae
           PB90-1]
          Length = 1067

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 97/296 (32%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV         S+  ++A  +PD    
Sbjct: 29  SGTQACKALRALGYQIVLVNSNPATIMTDPGTADVTYIEPLTVPSLTEIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   Q     +L    +        A     D++  K+ +   G+ +  S  
Sbjct: 89  NLGGQTGLNLSSQLAKAGVLARFGVRIIGVEADAIEKGEDRIIFKETMKRLGIDMPRSAP 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P       G   +   + + +   +  + +  +Q+L+E+
Sbjct: 149 AFSVEEAEKVATELGYPVVIRPAYTLGGTGGGHVYNVEELRVVASRGLAASMVNQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +          +   I   +   +Q  
Sbjct: 209 SVLGWEELELEVVRDAKNHLITVCFIENVDAMGVHTGDSYCVAPM-LTIEPKLQARLQEY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A+   ++IG  G +   F  DP + ++  +EIN +   T  S     +   G+   
Sbjct: 268 AYRIVESIGVIGGTNVQFAHDPETDRIVVIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 43/296 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A AL DAG++   +         D D   
Sbjct: 554 VMVLGGGPN-------RIGQGIEFDYCCVHAAWALRDAGYETIMVNCNPETVSTDYDTSD 606

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  + A  KP+       G    +   +     +++  T    +  A  
Sbjct: 607 KLYFEPLTIEDVLSIYAKEKPEGVVVQFGGQTPLNIAKELEAAGVKVLGTSPDTIDLAED 666

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D+ R         +P                 I  P +++P        + V+  +  +
Sbjct: 667 RDRFRQMMEKMGIPMPESGMASTFEEARAVAARIGYPVMVRPSFVLGGRAMEVVHDEAML 726

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L ++   +    +LI+++++          DA  D T+  VP    +       S +
Sbjct: 727 KDYLARAIDVSPERPILIDRFLEN---ATEAEADALADGTDAFVPAVMEHIEFAGIHSGD 783

Query: 211 STHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           S   +P       +   ++       + +   G+    +       KV+ LE N +
Sbjct: 784 SACAIPPVSLPKKHLATIEAYTLRIGRELKVAGVMNIQYAICQ--DKVYVLEANPR 837


>gi|162149109|ref|YP_001603570.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|209545147|ref|YP_002277376.1| carbamoyl phosphate synthase large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
 gi|161787686|emb|CAP57282.1| putative carbamoyl-phosphate synthase large chain
           [Gluconacetobacter diazotrophicus PAl 5]
 gi|209532824|gb|ACI52761.1| carbamoyl-phosphate synthase, large subunit [Gluconacetobacter
           diazotrophicus PAl 5]
          Length = 1084

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEFVERIILREKPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +       + D+ + ++ + + G+    S++
Sbjct: 89  TMGGQTALNTAMALDKSGFLKEHGVELIGADAEVIDRAEDRQKFREAMDAIGIESPRSVI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P VI+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTLDEARAALEQVGLPAVIRPSFTMGGSGGGIAYNREEFDQIVASGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDSADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                      G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LACLRAIGVDTGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 44/327 (13%), Positives = 88/327 (26%), Gaps = 55/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL +AGF+   +         D D S 
Sbjct: 563 IVILGGGPN-------RIGQGIEFDYCCVHAAYALREAGFETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    ++                 G              + +  T +  + 
Sbjct: 616 RLYFEPLTEEDVIALIRREQASGTVLGCIVQYGGQTPLKLSRALEAAGIPLLGTPADAID 675

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P            D    I  P VI+P        + ++  
Sbjct: 676 RAEDRERFQAMLHKLGLRQPDNGIARTAAEAEDVAERIGYPVVIRPSYVLGGRAMEIVHD 735

Query: 147 DQSIPLDLLQSSSWNHGDQLLIE-----QYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
             S+   +  +      D             D IE     + D         +   +   
Sbjct: 736 RASLQRYMRVALQLAGHDIASGPVLIDRYLNDAIEADVDCISDGHTVYVAGVMEHIEEAG 795

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
                   ++  + P  +   I  E++       + +G  G+    +        +F LE
Sbjct: 796 IHSG---DSACSLPPYTLSPAIVTELKEQTEAMARELGIVGLMNVQYAIKDQD--IFVLE 850

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFREL 288
           +N +   T     P +A   G    ++
Sbjct: 851 VNPRASRT----VPFVAKATGVPVAKI 873


>gi|297566674|ref|YP_003685646.1| carbamoyl-phosphate synthase large subunit [Meiothermus silvanus
           DSM 9946]
 gi|296851123|gb|ADH64138.1| carbamoyl-phosphate synthase, large subunit [Meiothermus silvanus
           DSM 9946]
          Length = 1030

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/298 (12%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++V  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQAVKALRSAGYEVVLVNSNPATIMTDPELAEATYLEPLTPEYLEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +            +++   ++  +      ++ +         VP    
Sbjct: 89  TLGGQTALNLSMTLHETGVLEKYNVQLIGANAAAIKKGEDREEFQRAMQKIGLEVPRGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P V++P       G  +   ++     L +  S +     L+E+
Sbjct: 149 VSSLEEGLTFARSIGYPMVVRPSFTLGGTGGGIAGDEKEFIEILTRGLSLSPTHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SILGWKEFELEVMRDRGDTVVIITSIENVDPMGVHTGDSITVAPAQTLTDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 QAIIREIGVDTGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 82/289 (28%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  ++ H KP      L G   
Sbjct: 587 ALREAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPIGVIATLGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A    +        +   P+                
Sbjct: 647 LKLAKPLAQAGVTLLGTSWEAIHRAEERSEFNRLCQELAIPQPLGRVAQSPEEAQRLAEG 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V++    +   L +  +       ++        L   V  
Sbjct: 707 IGYPLMVRPSYVLGGRAMQVVRDAAELRKYLAEIYAELSEKPSILLDQYLENALELDVDA 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +   +A            +S  ++T + P  +  +  + V+        A+G RG+
Sbjct: 767 ICDGERVVVAGIMEH-VERAGVHSGDSATILPPISLTPEQLETVKAYTRKLALAVGVRGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
               +        V+ LE N +   T     P ++   G+    +  L+
Sbjct: 826 LNVQYAV--KDGTVYILEANPRASRT----VPFVSKAIGHPLAKYAALI 868


>gi|306833760|ref|ZP_07466886.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis
           ATCC 700338]
 gi|304424097|gb|EFM27237.1| carbamoyl-phosphate synthase, large subunit [Streptococcus bovis
           ATCC 700338]
          Length = 1059

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVAILGTQVSDLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++++   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEENLRSYMRTAVKASPDHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQDTIADYTKRLAIGLNCFG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADQVYIEPLTLEFVTRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEAVAFAESIGYPVIVRPAFTLGGTGGGMCDNEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|325915492|ref|ZP_08177805.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria
           ATCC 35937]
 gi|325538293|gb|EGD09976.1| carbamoyl-phosphate synthase large subunit [Xanthomonas vesicatoria
           ATCC 35937]
          Length = 1080

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D D            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPDMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.073,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGLMEHIEEAGVHSGDSSCSLPPYSLSPKTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     VF LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDVVFLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|315303746|ref|ZP_07874253.1| carbamoyl-phosphate synthase, large subunit [Listeria ivanovii FSL
           F6-596]
 gi|313627888|gb|EFR96514.1| carbamoyl-phosphate synthase, large subunit [Listeria ivanovii FSL
           F6-596]
          Length = 1044

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 87/301 (28%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 10  GTQACLSLREEGYRVVLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPT 69

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +               +  A   +  R         VP    I
Sbjct: 70  LGGQTGLNMAMELSEAGILAECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDII 129

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 130 HNLDEAYAFVERIGYPVIVRPAYTLGGSGGGICHNEKELIETVTSGLKLSPVTQCLLEKS 189

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   + V   +       ++  +        +    Y+ ++ ++
Sbjct: 190 IAG-FKEVEYEVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVS 248

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 249 LKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 304

Query: 292 M 292
           +
Sbjct: 305 I 305



 Score = 42.6 bits (98), Expect = 0.072,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 89/280 (31%), Gaps = 33/280 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 560 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEIEQPLGVVVQFGGQTA 619

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T       A + D       +     P   +       +     
Sbjct: 620 INLADGLSKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQPAGKTATSVEEAIKVATN 679

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++++   +  +   N    +L+++YV G E+    + 
Sbjct: 680 IGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKHPVLVDRYVSGQEVEVDAIS 739

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   + +   +          +   G
Sbjct: 740 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRLSENVKNTIVDYTTRLATGLNIIG 795

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    ++ D    +VF +E+N       P ++ ++  P  
Sbjct: 796 MLNIQYVVD--GEEVFVIEVNPRSSRTAPFLSKITEIPMA 833


>gi|294786970|ref|ZP_06752224.1| carbamoyl-phosphate synthase, large subunit [Parascardovia
           denticolens F0305]
 gi|315226609|ref|ZP_07868397.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105]
 gi|294485803|gb|EFG33437.1| carbamoyl-phosphate synthase, large subunit [Parascardovia
           denticolens F0305]
 gi|315120741|gb|EFT83873.1| carbamoyl-phosphate synthase [Parascardovia denticolens DSM 10105]
          Length = 1076

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 48/320 (15%), Positives = 102/320 (31%), Gaps = 42/320 (13%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L + G++V  I+        DRS+                V+   +PD    
Sbjct: 29  SGSQACQSLREEGYEVVLINSNPATIMTDRSIADKVYIEPLTVEFAKRVIYKERPDAILG 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G + +V+      L+   +    + + A   + D+   RS        VP    
Sbjct: 89  TLGGQTGLNMVVELHNDGVLDEYGVEILGTTLEAINKAEDRELFRSLMNELGEPVPESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G      ++ +          +   Q LIE+
Sbjct: 149 VHTVEDAVRFAGELGYPVVVRPAYTLGGTGGGFAHNERELRHIADAGLKMSPVHQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +          +      +  + ++  
Sbjct: 209 SIAGFKEIEYEVMRDAHDNAIVVCNMENVDPVGIHTGDSVVVAPIQTLTDRE-NQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA- 279
           +    +A+   G        +P S   + +E+N  P ++  S        +P     A  
Sbjct: 268 SLRIIRALKICGGCNVQLALNPQSFNYYVIEVN--PRVSRSSALASKATGYPIAKISAKL 325

Query: 280 YAGYSFRELLLWMVEDA-SC 298
             G S  E+L  + + + +C
Sbjct: 326 AVGLSLDEILNPITQTSYAC 345



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 88/284 (30%), Gaps = 33/284 (11%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C   L   G++   I+                         V  V+A  +P        G
Sbjct: 581 CVETLRAEGYEAIVINNNPETVSTDFSISDRLYFEPLTTEDVMQVIALERPLGVVVQFGG 640

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A    +  +         P   + +     +  
Sbjct: 641 QTAINIAASLATHGVKILGTSLQAIDRAEDRHEFEAALQSLEIPQPEGATAVTVDEALVI 700

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++     + + +       +H   +L+++YV G EL  
Sbjct: 701 ANRIGYPVLVRPSYVLGGRAMEIVHNGDELKVYMATAVKEISHDAPILVDRYVLGKELEI 760

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V P++I  D + + +   A       
Sbjct: 761 DAICDGENVFI----PGLMEHIERAGIHSGDSISVYPSQIVSDQVKQTIVDYALRIGTGF 816

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G  G+    F+ D    +V+ LE+N       P ++ ++  P  
Sbjct: 817 GFVGLYNIQFIVDKQ-NRVYVLEVNPRSSRTVPFLSKITGVPMS 859


>gi|268608817|ref|ZP_06142544.1| carbamoyl phosphate synthase large subunit [Ruminococcus
           flavefaciens FD-1]
          Length = 1063

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 26  LEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++                       D      V  ++   +P        G    
Sbjct: 579 LKELGYEAVICNNNPETVSTDFDTGDRLYFDPLTKEDVQSIIETEQPYGVVVQFGGQTAI 638

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T + ++ +A   ++            P   +++     + +   +
Sbjct: 639 KLTRYLSDMGVRILGTSADMIDAAEDRERFDEVLEKCGIPRPAGHTVMNTEEAIAAAEDL 698

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        +I+      +   +    S N  + +LI++Y+ G E+    + D
Sbjct: 699 GYPVLLRPSYVLGGQNMIIAHSRADVVEYMGIIMSHNIENPVLIDKYMMGTEVEVDAICD 758

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  + PA+   + I + +        + +   G+
Sbjct: 759 GEDFLI----PGIMEHIERAGVHSGDSISIYPAQHLSERIKRIIVEYTRKLAKELNVIGL 814

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               ++    + +VF +E+N +   T     P ++   G    ++   +
Sbjct: 815 VNIQYVV--YNHEVFVIEVNTRSSRT----VPYISKVTGIPMVDIATKI 857



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +V  ++ + +                     +  ++   KPD   + 
Sbjct: 30  GTQACRALKQEGLEVVLVNSNPATIMTDKAMADKVYIEPLTLDVIKRIIEIEKPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G    +Q      L+   +    +  L    + D+   +         V     +
Sbjct: 90  LGGQTGLTLSMQLAEEGFLDSHNVKLLGADPLTIHKAEDRQAFKDTMEKIGEPVIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D   +I  P +++P       G  + + ++ +          +   Q+L+E+ 
Sbjct: 150 ENVEDAVDFAQVIHYPVIVRPAFTLGGTGGGIAQNEEELRDIATNGLRLSPITQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +F    +                 + Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDAKGNVITVCSMENFDPVGVHTGDSIVIAPAVTLSDRE-YQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     F   P S +   +E+N  P ++  S     +   GY   +    
Sbjct: 269 INIIKELKVEGGCNCQFALHPTSFQYAVIEVN--PRVSRSS--ALASKATGYPIAKTAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|206891197|ref|YP_002249059.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206743135|gb|ACI22192.1| carbamoyl-phosphate synthase, large subunit [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 1105

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 101/302 (33%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     + L++   +PD    
Sbjct: 29  SGAQACKALKQEGYQVVLVNSNPATIMTDPSMADSTYIEPLTAEILELIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  VQ     IL+   +    + + A   + D+   KQ ++  G+ V  S  
Sbjct: 89  TLGGQTALNLAVQLGEAGILDRYSVELIGANLHAIKKAEDRELFKQAMTKIGLEVPRSAA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P +++P       G  V    +     L +    +   Q+LIE+
Sbjct: 149 VHSLKEGLEAIDYIGFPAILRPAFTLGGTGGGVAYNIEEFKELLERGLKLSPVSQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +   +      +        
Sbjct: 209 SLLGWKEFELEVMRDKSDNVVIVCSIENFDPMGVHTGDSITVAPVQTLTDREYQIMRDNA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKAIREIGVDTGGSNIQFAVNPKNGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L + G++   I         D D              V  ++   KP        G    
Sbjct: 618 LRELGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLHIVEREKPLGVILQFGGQTPL 677

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T +  +  A    + +      +   P   +       +     +
Sbjct: 678 KLAKALESHGVNILGTSADAIDRAEDRKRFKELVDKLNLKQPPSETATSLEEALKIADTL 737

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
             P +++P        + ++  ++S+   + ++   +    +LI++Y  D IE+    + 
Sbjct: 738 GYPILVRPSYVLGGRAMEIVYDEESLRRYMREAVKASEDHPVLIDRYLEDAIEVDVDAIS 797

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  V    +   +           ++  + P  +  +I ++++       + +  +G+
Sbjct: 798 DGADVVVAGIMQHIEEAGIHSG---DSACSLPPYSLSQEIIQKIKEETISIAKELKVKGL 854

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +       +++ LE+N +   T     P ++   G    ++   +
Sbjct: 855 MNVQYAV--KDSEIYVLEVNPRASRT----IPYVSKSIGVPLAQMASKI 897


>gi|319790533|ref|YP_004152166.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio
           ammonificans HB-1]
 gi|317115035|gb|ADU97525.1| carbamoyl-phosphate synthase, large subunit [Thermovibrio
           ammonificans HB-1]
          Length = 1073

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYQVVLVNSNPATIMTDPDIADRTYIEPLTVEVLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         ILE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TVGGQTALNLAVKLHEAGILEKYGVELIGAKVEAIKKAEDRELFKEAMLKIGLEVPKSGT 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P +I+P       G  V    +       +  + +   ++LIE+
Sbjct: 149 AHTLEEALEVVKEVGLPAIIRPAFTLGGEGGGVAYNIEEFKEIAKKGLAASPVSEILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYELEVMRDLNDNVVIICSIENVDPMGVHTGDSITVAPAQTLTDKEYQVLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREIGVETGGSNVQFAVNPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 105/289 (36%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL + G++   +         D D S  L    L  + A NV+        +VQ      
Sbjct: 584 ALRELGYEAHMVNCNPETVSTDYDTSDKLFFEPLTLEDALNVVEKEKPLGVVVQFGGQTP 643

Query: 72  ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHL 123
                 LE   +    +   +  ++ D+ R +++++  G+   PS +             
Sbjct: 644 LKLSVPLEREGVKILGTSSESIDIAEDRERFRELLNRLGLKQPPSGIARSLEEAEKIAQE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++   + +   + ++   +    +LI+++++          
Sbjct: 704 IGFPVLMRPSYVLGGRAMRIVYSMEELRQYMAEAVEVSEEKPVLIDKFLED---AVEFDV 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  E+ +     +  E    S +S  VLP   +  DI ++++ +       +  +G
Sbjct: 761 DAVADGEEVVIGGVMEHIEEAGIHSGDSACVLPTFSVSRDIVEKIKEITRKIALELNVKG 820

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +++ +E+N +   T     P ++   G    ++   
Sbjct: 821 LINIQFAV--KDGEIYIIEVNPRASRT----VPFVSKATGIPLAKVATK 863


>gi|210624199|ref|ZP_03294254.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275]
 gi|210153186|gb|EEA84192.1| hypothetical protein CLOHIR_02210 [Clostridium hiranonis DSM 13275]
          Length = 1069

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 91/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L   G +   I         D D              V  ++    PD       G
Sbjct: 580 CVKSLRKQGIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLNIIEKENPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKHIPILGTDFEDIDAAEDREKFDELLERLDINRPKGRGVWTVEEGLEV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AHNLGFPVLVRPSYVLGGQGMEITYDEARLVQYLEAAFERDSKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P++   D I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSITMYPSQNISDRIKEKILDYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VIGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTLEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V     
Sbjct: 89  GMGGQTGLNLAVELYESGILDKYGVKVIGTSVESIKKGEDRDIFREVMREINQPVIESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P V++P       G  + + ++ +   L+     +   Q+L+E+
Sbjct: 149 VTTLEDGLAYANKIGYPLVVRPAYTLGGTGGGIAENEEELKEILVHGLQLSPVSQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S+  + +     +     +              +       +++ 
Sbjct: 209 SIKGWKEIEYEVMRDSIGNSIVICNMENVDPVGVHTGDSIVVAPT-QTLSAKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|73541863|ref|YP_296383.1| carbamoyl phosphate synthase large subunit [Ralstonia eutropha
           JMP134]
 gi|72119276|gb|AAZ61539.1| carbamoyl-phosphate synthase large subunit [Ralstonia eutropha
           JMP134]
          Length = 1082

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++   +PD    
Sbjct: 29  SGAQACKALREEGFKVILVNSNPATIMTDPATADVTYIEPITWEVVERIIEKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+  ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLDKYKVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALAVQTRIAQDTGTSGYPIVIRPSFTLGGTGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDKADNCIIICSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 93/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAIEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLERNGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALRLAEE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +   E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSAETVAELKRQTAAMAKALNVVG 828

Query: 243 ISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     +    V+ LE+N +   T     P ++   G    ++   
Sbjct: 829 LMNVQFAIQQNNGVDTVYVLEVNPRASRT----VPYVSKATGLQLAKIAAR 875


>gi|328676104|gb|AEB26974.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida
           Fx1]
          Length = 1094

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|187930920|ref|YP_001890904.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. mediasiatica FSC147]
 gi|187711829|gb|ACD30126.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. mediasiatica FSC147]
          Length = 1094

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V                +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALTDGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|254375167|ref|ZP_04990647.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           GA99-3548]
 gi|151572885|gb|EDN38539.1| carbamoyl-phosphate synthase large chain [Francisella novicida
           GA99-3548]
          Length = 1094

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|254372021|ref|ZP_04987514.1| carbamoyl-phosphate synthase [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|151569752|gb|EDN35406.1| carbamoyl-phosphate synthase [Francisella novicida GA99-3549]
          Length = 1094

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|115314001|ref|YP_762724.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica OSU18]
 gi|115128900|gb|ABI82087.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Francisella
           tularensis subsp. holarctica OSU18]
          Length = 1095

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 98/326 (30%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++ ++    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|89255476|ref|YP_512837.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica LVS]
 gi|156501405|ref|YP_001427470.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009320|ref|ZP_02274251.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368455|ref|ZP_04984472.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica FSC022]
 gi|290954319|ref|ZP_06558940.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica URFT1]
 gi|295312265|ref|ZP_06803060.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. holarctica URFT1]
 gi|89143307|emb|CAJ78470.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica LVS]
 gi|156252008|gb|ABU60514.1| carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|157121349|gb|EDO65550.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 1094

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 98/326 (30%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++ ++    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACYIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|328946394|gb|EGG40535.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1087]
          Length = 1059

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAADIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|326406894|gb|ADZ63965.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis
           subsp. lactis CV56]
          Length = 1064

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 88/293 (30%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   I+ +                       V  ++   +P+       G
Sbjct: 577 CVKALQALGKEAIVINSNPETVSTDFSISDKLYFEPLTFEDVMNIIDLEQPEGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L  A   D             P   +       + +
Sbjct: 637 QTAINLAEPLSKAGVKILGTQVEDLDRAEDRDLFEKALQDLEIPQPPGATATNEEEAVAN 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +I+P        + +I  ++ +   + ++   +    +L++ Y+ G E    
Sbjct: 697 ANKIGYPVLIRPSFVLGGRAMEIINNEKDLRDYMNRAVKASPEHPVLVDSYLQGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  +     P     ++   +          + C
Sbjct: 757 AICDGTEVLLPGIMEHIERAG---VHSGDSMAVYPPQTFSQEVIDTIVDYTKRLAIGLNC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++        +L   M+
Sbjct: 814 IGMMNIQFVIFEE--QVYVIEVNPRASRT----VPFLSKVTNIPMAQLATQMI 860



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ--AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN- 114
           L G  G +  ++   I  L E+     G   SA+   + R         +          
Sbjct: 90  LGGQTGLNMAMELSKIGILEELNVELLGTKLSAIDQAEDRELFKELCERIGEPLCASDIA 149

Query: 115 ---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVDEAVEIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|302878017|ref|YP_003846581.1| urea carboxylase [Gallionella capsiferriformans ES-2]
 gi|302580806|gb|ADL54817.1| urea carboxylase [Gallionella capsiferriformans ES-2]
          Length = 1208

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P +IK   GG  +G+ +      +             +      Y++  
Sbjct: 142 HAHAEAARIGYPVMIKSTAGGGGIGMRLCWSSDELNEAFQSVERLARANFKDAGIYLEKY 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234
                 +           V         ++  +       PA     ++ + +   A   
Sbjct: 202 VEHARHIEVQLFGDGRGCVIDLGERDCSVQRRNQKVIEETPAPNLTPEVRQHLLATAVRL 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLL 290
             A+  +     +F+FD  + + ++LE+N +     G+T            G    +L+ 
Sbjct: 262 GVAVQYQSAGTVEFVFDANNGEFYFLEVNTRLQVEHGVTE--------QVTGV---DLVE 310

Query: 291 WMVEDAS 297
           WMV  A+
Sbjct: 311 WMVLQAA 317


>gi|223934510|ref|ZP_03626431.1| urea carboxylase [bacterium Ellin514]
 gi|223896973|gb|EEF63413.1| urea carboxylase [bacterium Ellin514]
          Length = 1201

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 30/224 (13%), Positives = 70/224 (31%), Gaps = 16/224 (7%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            S +    L           +   +P    +      +     I  P ++K   GG  +G
Sbjct: 105 PSQMEDFGLKHRARELAGECNVPLLPGTQLLSSVDEAVQRASGIGYPVMLKSTAGGGGIG 164

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + V   +  +       +  +  +      +++        +        +  V      
Sbjct: 165 MRVCNNEADLREHFDSVTRLSQTNFKNGGLFLEKFVRHARHIEVQIFGDGQGRVLALGER 224

Query: 201 SYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              L+  +       PA   P ++ +++   A    + +  R     +F++D  +   ++
Sbjct: 225 DCSLQRRNQKVVEETPAPNLPPEVREQLFACARRLGERVKYRSAGTVEFVYDAEAGAFYF 284

Query: 260 LEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           LE+N +     G+T            G    +L+ WMV  A+  
Sbjct: 285 LEVNTRLQVEHGVTE--------EVLGI---DLVEWMVRLAAGD 317


>gi|295702822|ref|YP_003595897.1| carbamoyl-phosphate synthase large subunit [Bacillus megaterium DSM
           319]
 gi|294800481|gb|ADF37547.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium
           DSM 319]
          Length = 1036

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G++V  I+ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACLSLKEEGYEVILINNNPATIMTDTHVADRIYFEPLTVDCVEKIIAKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++   + +      ++  T    +    S ++ R+     +  VP    
Sbjct: 89  TLGGQTGLNLALELHEQNILPKYDVKLLGTPIESIKKGESREEFRALMNELNEPVPESEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   Q LIE+
Sbjct: 149 VTKVEEALAFAKKIGFPVIVRPAYTLGGTGGGIAHSMEELEKLSASGLRESAITQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            ++ T I +   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEVEYEVMRDVNNTCITICNMENIDPVGVHTGDSVVVAPSQTLTDVEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++G  G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SVKIISSLGIIGGCNIQFALDPKSKQYYLIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 100/320 (31%), Gaps = 42/320 (13%)

Query: 1   MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAH 48
           +A++  G    G   E + S  S      ALE  G++   I+        D  V   L  
Sbjct: 557 VAIIGSGPIRIGQGVEFDYS--SVHGVL-ALEKEGYETILINNNPETVSTDFEVADRLYF 613

Query: 49  LKPDL--AFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
               +    NVL             G      +       + +    + ++ +    D  
Sbjct: 614 EPVTVEDVLNVLDAENVTDVIVQYGGQTAISLVKGLEEAGVNLLGITNDVIDALEDRDLF 673

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                               +  +     +  P +I+P       G++ I+ +  +   L
Sbjct: 674 YKLLDDCDIPHIPGEMAKDAKELVKKAKDMGFPLLIRPSYVIGGKGMLTIQNETELQACL 733

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               + +    +LI+ Y  G E    V+ D    +     P    +  +    S +S  +
Sbjct: 734 PAIKASHF--PMLIDAYFPGKEAEVDVVADGKDVLI----PTIVEHIEKAGVHSGDSYAL 787

Query: 215 LPAKIPLDIYKEVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           LPAK     +KE     A      +  +GI    ++    + +V+ LE+N +   T    
Sbjct: 788 LPAKTVKAAHKEKMVSYAQKIVNKLQYKGIMNIQYVI--YNDEVYMLEVNPRASRT---- 841

Query: 274 FPEMAAYAGYSFRELLLWMV 293
            P ++         L   ++
Sbjct: 842 VPVVSKVCNTPLVSLSTQIL 861


>gi|289192037|ref|YP_003457978.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus sp. FS406-22]
 gi|288938487|gb|ADC69242.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus sp. FS406-22]
          Length = 491

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 90/297 (30%), Gaps = 38/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ + +                     V  ++   +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       + IL+   I    S I    ++ D+          +  V  C +
Sbjct: 86  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEPVTKCKA 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +     +   ++   Q+LI++
Sbjct: 146 VNSVDEAIEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELMDIASKGLKYSIIHQVLIDE 205

Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G +            +  +            +  +   ++    LP +    +    
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A    + +G  G     F  +    +   +E+N  P ++  S     +   GY 
Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314


>gi|170759037|ref|YP_001787167.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum
           A3 str. Loch Maree]
 gi|226700926|sp|B1KT07|CARB_CLOBM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169406026|gb|ACA54437.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           A3 str. Loch Maree]
          Length = 1068

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 91/281 (32%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G +   +         D D              V  ++   KP+       G
Sbjct: 580 CVKALKKLGIETIIVNNNPETVSTDFDVSDKLYFEPLTEEDVLNIVEKEKPNGIILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T +G +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLAKFLKEKNIPILGTTAGQIDMAEDREKFDELLEKLQISRPKGKGIWSVEDGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   N  + +LI++Y+ G E+   
Sbjct: 700 TKKLGFPVLVRPSYVLGGQGMEITHDEKELVYYLSNAFQKNKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +    DI +++          IG
Sbjct: 760 AISDGEDVLI----PGIMEHLERAGVHSGDSITMYPTQNVSKDIKEKILEYTKKLALGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      +++ G +V  I+ +                       V  V+A  +PD    
Sbjct: 29  SGTQACEGVKEEGVEVVLINSNPATIMTDKEVADKVYLEPLTVEFVEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+      L+   +    + I +     D+   + V+S    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYDKGILKKCGVNVIGTSIESIKEGEDRELFRNVMSRINEPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTDIENGKAFANKIGYPVIVRPAYTLGGTGGGIAESEEELDEILALGLQVSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 + V   +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGW-KEIEYEVMRDSRGNCVTVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     +IG +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SINIINSIGIKGGCNVQFALNPNSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|119025554|ref|YP_909399.1| carbamoyl-phosphate synthase large chain [Bifidobacterium
           adolescentis ATCC 15703]
 gi|167006436|sp|A1A0T4|CARB_BIFAA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|118765138|dbj|BAF39317.1| carbamoyl-phosphate synthase large chain [Bifidobacterium
           adolescentis ATCC 15703]
          Length = 1126

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   +  +         ++  D +LIE+
Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIHYSPTDHVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 SIEGWKEYELELMRDKKDNVLVVCPIQNVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVNPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|169796465|ref|YP_001714258.1| putative multifonctional protein [Includes: putative
           carbamoyl-phosphate synthase L chain; putative biotin
           carboxylase; putative allophanate hydrolase subunit 2
           and 1] [Acinetobacter baumannii AYE]
 gi|169149392|emb|CAM87276.1| putative multifonctional protein [Includes: putative
           Carbamoyl-phosphate synthase L chain; putative Biotin
           carboxylase; putative Allophanate hydrolase subunit 2
           and 1] [Acinetobacter baumannii AYE]
          Length = 1110

 Score = 62.2 bits (149), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|294497450|ref|YP_003561150.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
 gi|294347387|gb|ADE67716.1| carbamoyl-phosphate synthase, large subunit [Bacillus megaterium QM
           B1551]
          Length = 1036

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 101/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G++V  I+ + +                     V  ++A  KPD    
Sbjct: 29  SGTQACLSLKEEGYEVILINNNPATIMTDTHVADRIYFEPLTVDCVEKIIAKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++   + +      ++  T    +    S ++ R+     +  VP    
Sbjct: 89  TLGGQTGLNLALELHEQNILPKYDVKLLGTPIESIKKGESREEFRALMNELNEPVPESEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +          +   Q LIE+
Sbjct: 149 VTKVEEALAFAEKIGFPVIVRPAYTLGGTGGGIAHSMEELEKLSASGLRESAITQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            ++ T I +   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEVEYEVMRDVNNTCITICNMENIDPVGVHTGDSVVVAPSQTLTDVEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++G  G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SVKIISSLGIIGGCNIQFALDPKSKQYYLIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 100/320 (31%), Gaps = 42/320 (13%)

Query: 1   MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAH 48
           +A++  G    G   E + S  S      ALE  G++   I+        D  V   L  
Sbjct: 557 VAIIGSGPIRIGQGVEFDYS--SVHGVL-ALEKEGYETILINNNPETVSTDFEVADRLYF 613

Query: 49  LKPDL--AFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
               +    NVL             G      +       + +    + ++ +    D  
Sbjct: 614 EPVTVEDVLNVLDAENVKDVIVQYGGQTAISLVKGLEEAGVNLLGITNDVIDALEDRDLF 673

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                               +  +     +  P +I+P       G++ I+ +  +   L
Sbjct: 674 YKLLDECDIPHIPGEMAKDEQELVQKAKDMGFPLLIRPSYVIGGKGMLTIQNETELQACL 733

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               + +    +LI+ Y  G E    V+ D    +     P    +  +    S +S  +
Sbjct: 734 PAIKASHF--PMLIDAYFPGKEAEVDVVADGKDVLI----PTIVEHIEKAGVHSGDSYAL 787

Query: 215 LPAKIPLDIYKEVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           LPAK     +KE     A      +  RGI    ++    + +V+ LE+N +   T    
Sbjct: 788 LPAKTVDAAHKEKMVSYAQKIVNKLQYRGIMNIQYVI--YNDEVYMLEVNPRASRT---- 841

Query: 274 FPEMAAYAGYSFRELLLWMV 293
            P ++         L   ++
Sbjct: 842 VPVVSKVCNTPLVSLSTQIL 861


>gi|241667587|ref|ZP_04755165.1| carbamoyl phosphate synthase large subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254876132|ref|ZP_05248842.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
 gi|254842153|gb|EET20567.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25015]
          Length = 1094

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQACKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPETGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   +++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLDIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + ++  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  ++       +LI+++++       V   A            +       +
Sbjct: 746 KEELDAYIKTNAKCILEGPILIDKFLEN-ATELDVDALADGGDRVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|325690585|gb|EGD32588.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK115]
          Length = 1059

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK------MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +     ++DK       +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDKAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|94498549|ref|ZP_01305104.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp.
           SKA58]
 gi|94421992|gb|EAT07038.1| carbamoyl-phosphate synthase, large subunit [Sphingomonas sp.
           SKA58]
          Length = 1111

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVTKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  +       LE   +    +   A   + D+++ +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALFNDGTLEKFGVQMIGADAEAIDKAEDRIKFRDAMDKIGLESARSRI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+      P +I+P       G  +          +      +   ++LIE+
Sbjct: 149 AHTMEEALDALEFTGLPAIIRPSFTMGGTGGGIAYNRDEFVSIVRGGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.035,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
            + I  P +++P        + ++     +   +  +   +    +LI+QY  D +E+  
Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAVEVDV 799

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +  DI  E++R A +  +A+ 
Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSADIIAEIERQADVLARALS 856

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F        V+ +E+N +   T     P +A   G    ++   
Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902


>gi|169335520|ref|ZP_02862713.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258258|gb|EDS72224.1| hypothetical protein ANASTE_01934 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1074

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 90/303 (29%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ + GF+V  I+ +                      SV  ++   +PD    
Sbjct: 29  SGTQACEAIREEGFEVVLINSNPATIMTDKQTADKVYIEPITLESVVKIIEKERPDAIIG 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +  ++           +++  T    +      D+ R         +     
Sbjct: 89  GMGGQTALNMTMELHNKGILDKYGIKVIGTSVEGIMKGEDRDEFRKLMQEIGQPIIESRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P V++P       G  ++  +  +        S +   Q+LIE+
Sbjct: 149 VNTLEDAKKAALDIGYPVVVRPAYTLGGTGGGIVNNEDELLKIAESGLSLSMTTQILIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            +                        +      +   + +S  V P +       + ++ 
Sbjct: 209 SI--KNWKEIEYEVMRDSNGTCITICNMENIDPVGIHTGDSIVVAPTQTLSDKECQMLRS 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+G  G     F   P S +   +EIN  P ++  S     +   GY   ++ 
Sbjct: 267 ASLDIIEAVGIEGGCNVQFALHPDSMEYAIIEIN--PRVSRSS--ALASKAVGYPIAKVS 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/245 (14%), Positives = 82/245 (33%), Gaps = 12/245 (4%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           D  V  +    KPD       G          + E + I  T    +  A   ++  +  
Sbjct: 618 DEDVLNIYNKEKPDGVILQFGGQTAIKLAEMCVRENIPILGTSPDSIDKAEDRERFEAML 677

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                  P    +       +    I  P +++P       G+++   ++S+   L  + 
Sbjct: 678 SKLGVKQPKGKGVFTVEEGKEIAQKIGYPVLVRPSYVLGGRGMMICHDEESLIKYLTNAI 737

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +  + +LI++Y+ G+E+    + D          P    +       S +S  + P +
Sbjct: 738 KEDGKNPVLIDKYLFGLEVEVDAVCDGVDVFV----PGIMEHLDRAGVHSGDSATLYPTR 793

Query: 219 I-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVS 272
                I + +          +  +G+    F+      +++ +E+N       P +T ++
Sbjct: 794 HVSDKIKETLYDYTRKIALELNVKGMINIQFIV--FKDELYVIEVNPRSSRTVPYITKIT 851

Query: 273 IFPEM 277
             P +
Sbjct: 852 NVPIL 856


>gi|110800466|ref|YP_697261.1| carbamoyl phosphate synthase large subunit [Clostridium perfringens
           ATCC 13124]
 gi|168209813|ref|ZP_02635438.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens B str. ATCC 3626]
 gi|122958642|sp|Q0TM79|CARB_CLOP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|110675113|gb|ABG84100.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens ATCC 13124]
 gi|170712157|gb|EDT24339.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           perfringens B str. ATCC 3626]
          Length = 1067

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 86/254 (33%), Gaps = 11/254 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD       G            + +    T S  +  A   ++      
Sbjct: 619 EDVLNIIDKEKPDGVILQFGGQTAIKLAKFLKEKNIPTLGTTSDQIDLAEDREQFDDLLE 678

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             +   P    +      ++    +  P +++P       G+ +   ++ +   L  +  
Sbjct: 679 RLNIARPKGKGVWSLEEGLEEARRLGFPILVRPSFVLGGQGMEITHDEEELTYYLTNAFE 738

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AK 218
            +  + +LI++Y+ G E+    + D    +     P    +       S +S  + P   
Sbjct: 739 KDSKNPILIDKYLMGREIEVDAISDGEDVLV----PGIMEHLERAGVHSGDSITMYPAQN 794

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I   I ++V         +IG +G+    F+      K++ +E+N +   T     P ++
Sbjct: 795 ISDKIKEDVLDYTKKLALSIGIKGMINIQFI--EFEGKLYVIEVNPRASRT----VPYIS 848

Query: 279 AYAGYSFRELLLWM 292
             +G    ++   +
Sbjct: 849 KVSGVPIVDIATRI 862



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKVYLEPLTVEFVEKVIEKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +       + IL+   +    + I +     D+   + +++    PV  S  
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRINQPVIQSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 ITDLDAGIAFARKIGYPVIVRPAYTLGGTGGGIANNEEELIETLTSGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|118378204|ref|XP_001022278.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila]
 gi|89304045|gb|EAS02033.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Tetrahymena thermophila SB210]
          Length = 673

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/251 (17%), Positives = 85/251 (33%), Gaps = 22/251 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +  ++    S+   L   K      D   + +H   G   E+          +I +    
Sbjct: 47  QAYRVGPAPSLQSYLNSQKIIEIAHDSNCSAIHPGFGFLSENADFADECTTNKIIFVGPP 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK ++++  VPV P         D        I  P +IK + GG   
Sbjct: 107 TDAIRKMGSKSESKIIMTNAKVPVVPGYHGENQDKDYLFEQARSIGFPVLIKAVLGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+ ++ K+      L  +       +     L+ +       +   V GD   +   +  
Sbjct: 167 GMRIVTKESEFFEALESAKRESLKAFKDDRVLIEKYIQKPRHIEVQVFGDHHGNYVHL-- 224

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                    ++          P+ I  D+   +   A  A +A+G       +F+FD +S
Sbjct: 225 ---FERDCSIQRRHQKVIEEAPSNINWDLRNSIGSSAVDAAKAVGYYNAGTVEFIFDLIS 281

Query: 255 RKVFWLEINVQ 265
            + +++E+N +
Sbjct: 282 NQYYFMEMNTR 292


>gi|306823312|ref|ZP_07456687.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309802567|ref|ZP_07696671.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium JCVIHMP022]
 gi|304553019|gb|EFM40931.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308220631|gb|EFO76939.1| carbamoyl-phosphate synthase, large subunit [Bifidobacterium
           dentium JCVIHMP022]
          Length = 1126

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+  ++    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|283455660|ref|YP_003360224.1| carbamoyl-phosphate synthase large chain [Bifidobacterium dentium
           Bd1]
 gi|283102294|gb|ADB09400.1| carB Carbamoyl-phosphate synthase large chain [Bifidobacterium
           dentium Bd1]
          Length = 1126

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+  ++    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|213156422|ref|YP_002318842.1| urea amidolyase [Acinetobacter baumannii AB0057]
 gi|213055582|gb|ACJ40484.1| urea amidolyase [Acinetobacter baumannii AB0057]
          Length = 769

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|212716892|ref|ZP_03325020.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660177|gb|EEB20752.1| hypothetical protein BIFCAT_01836 [Bifidobacterium catenulatum DSM
           16992]
          Length = 1126

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAINPNTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|171743369|ref|ZP_02919176.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC
           27678]
 gi|171278983|gb|EDT46644.1| hypothetical protein BIFDEN_02500 [Bifidobacterium dentium ATCC
           27678]
          Length = 1113

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 16  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 75

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+  ++    + + A     D+   K+VV   G     S  
Sbjct: 76  TLGGQTALNAAMALGEAGVLKKYDVELIGASLEAIDRGEDRELFKKVVEEAGAESARSDI 135

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   ++ +         ++  D++LIE+
Sbjct: 136 AHSIEEVDRIAEKFGYPLVVRPSFTMGGLGSGIAHDEEELHRIAGAGIHYSPTDEVLIEE 195

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 196 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 255

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 256 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 311

Query: 291 WM 292
            +
Sbjct: 312 KL 313


>gi|145220244|ref|YP_001130953.1| carbamoyl-phosphate synthase large subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206408|gb|ABP37451.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 492

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D+D              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIDLADATYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       +    I  P +I+P       G    +        +    + +   ++L+E+
Sbjct: 149 VRNEKEAREALEEIGLPIIIRPSFTLGGTGGGFAETKAEYYDAVRHGLAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 CLFGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAINPENGRIVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|300691214|ref|YP_003752209.1| carbamoyl-phosphate synthase large chain (carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum PSI07]
 gi|299078274|emb|CBJ50922.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Ralstonia solanacearum PSI07]
          Length = 1081

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + GFKV  +              DV          V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGFKVVLVNSNPATIMTDPSTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLHRHGVLKKYNVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +                     P VI+P       G  +    +       +    +  
Sbjct: 149 AHSLEEALAVQSQIARETGTSGYPIVIRPSFTLGGTGGGIAYNREEFEDICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKKDNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 592 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 652 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEALKLADE 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 712 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDAL 771

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 772 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMARALNVVG 828

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 829 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 875


>gi|332854998|ref|ZP_08435654.1| urea carboxylase [Acinetobacter baumannii 6013150]
 gi|332869484|ref|ZP_08438802.1| urea carboxylase [Acinetobacter baumannii 6013113]
 gi|332727692|gb|EGJ59105.1| urea carboxylase [Acinetobacter baumannii 6013150]
 gi|332732714|gb|EGJ63936.1| urea carboxylase [Acinetobacter baumannii 6013113]
          Length = 1201

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|215483928|ref|YP_002326153.1| urea carboxylase [Acinetobacter baumannii AB307-0294]
 gi|301347132|ref|ZP_07227873.1| urea carboxylase [Acinetobacter baumannii AB056]
 gi|301510152|ref|ZP_07235389.1| urea carboxylase [Acinetobacter baumannii AB058]
 gi|301594663|ref|ZP_07239671.1| urea carboxylase [Acinetobacter baumannii AB059]
 gi|213987692|gb|ACJ57991.1| urea carboxylase [Acinetobacter baumannii AB307-0294]
          Length = 1201

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALAEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAFQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|255658273|ref|ZP_05403682.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida
           DSM 20544]
 gi|260849586|gb|EEX69593.1| carbamoyl-phosphate synthase, large subunit [Mitsuokella multacida
           DSM 20544]
          Length = 1065

 Score = 62.2 bits (149), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 103/301 (34%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  +++  +PD     
Sbjct: 20  GSQACRALKEEGLEVVLVNSNPATIMTDTHIADRVYIEPLTVEFLEEIISKERPDGLLAT 79

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +         +P    +
Sbjct: 80  LGGQAGLNLAVQLSEKGVLEKYHVELLGTPLKAIERAEDRELFKETMQKLGEPIPESTIV 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 140 EDVPSAVEFANEIGYPVIVRPAYTMGGTGGGIAENEEELVEIVIKGLTYSMIGQVLIERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 200 VAGWKEIEYEVMRDGHDNCITVCNMENFDPVGVHTGDSIVVAPSQTLTDHE-YQMLRSAS 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 259 LRIIRELGIEGGCNAQYALDPNSNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 314

Query: 292 M 292
           +
Sbjct: 315 I 315



 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/289 (10%), Positives = 86/289 (29%), Gaps = 30/289 (10%)

Query: 25  ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I           D+             V  ++    P+       G   
Sbjct: 572 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIIDKENPEGVIVQFGGQTA 631

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         +++  T    +  A   ++       +    P   S+      +     
Sbjct: 632 INLAASLQKAGVKVFGTSVDDIDRAEDRERFDEVLTQTQIPRPQGISVTNLDEAVTGAAK 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 692 IGYPVMVRPSYVLGGRAMEIVYNEAELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDGIS 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +   +   +         ++  +G+
Sbjct: 752 DGVDVVIPGIMEHVERAG---VHSGDSIAVYPPQTLSSKVIYTIIDYTKRLALSLHVKGL 808

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F+   +  +V+ +E+N +   T     P ++         L   +
Sbjct: 809 LNIQFVV--VDGEVYIIEVNPRSSRT----VPFLSKVTNVDMVGLATRI 851


>gi|317496520|ref|ZP_07954869.1| carbamoyl-phosphate synthase [Gemella moribillum M424]
 gi|316913323|gb|EFV34820.1| carbamoyl-phosphate synthase [Gemella moribillum M424]
          Length = 1058

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         +L+   +    + + +   + D+   R+     +  VP    I
Sbjct: 90  LGGQVGLNLAVELHKSGVLDRYGVELLGTKLSSIEQAEDRELFRNLMNELNEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTVEEAYDFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPESFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 91/284 (32%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++ H  P        G   
Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    + +A   DK            P+  +       + +   
Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLRKLEIPQPLGKTAFDVETAVKNAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +   +    +L ++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEESELRRYMKTAVKLSPEHPVLTDRYLVGREIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  +   ++        + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTQNEKDKLIEYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
               ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858


>gi|311029956|ref|ZP_07708046.1| carbamoyl phosphate synthase large subunit [Bacillus sp. m3-13]
          Length = 1071

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACIALREEGYRVILVNSNPATIMTDQEMADKVYMEPLTVEFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           ++I  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNLAVELAEAGVLEECNVQILGTKLSAIQKAEDRDLFRTLMNELGEPVPQSEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +  + +  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 TNLEEAYEFINEVGYPVIVRPAYTLGGTGGGICSDEEELIEIVTSGLKNSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 90/285 (31%), Gaps = 31/285 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP        G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMNIINLEKPKGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + DK            P   + +     ++    
Sbjct: 640 INLAAELEARGVKILGTSLEDLDRAENRDKFEQTLNTLEIPQPKGKTAISIPEAIEIAEG 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K + +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKSEELLHYMKNAVKINPEHPVLIDKYMTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   I +++        Q +   G+
Sbjct: 760 DGKDVFIPGIMEHIERAG---VHSGDSIAVYPPQTLSAAIKEQIIDYTRRLAQGLNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGY 283
               F+      +V+ +E+N       P ++ ++  P        
Sbjct: 817 LNIQFVI--YKEEVYVIEVNPRSSRTVPFLSKITHVPMAKVATKI 859


>gi|255528110|ref|ZP_05394940.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|255508206|gb|EET84616.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 864

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKAIKEEGIETILINSNPATIMTDSNMADKVYIEPLTLECVKEIIEKERPDGILA 88

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G                    +++   +S  +  A   ++ +   + ++  +P+   
Sbjct: 89  GFGGQTALNLAMELKKHGVLDEFKVKLLGINSEAIKKAEDREEFKKLMIENNQPIPMSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +I+P       G  + +    +          +   Q+L+EQ
Sbjct: 149 ATNVDECVDFVDKYGFPVIIRPAYTLGGTGGGIAENMDQLLEICDLGIKMSPIGQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   +       ++  +        +    Y  +++ 
Sbjct: 209 SVAGW-KELEYEVIRDGKDNCIIICNMENIDPVGIHTGDSIVVAPSQTLRDKEYHMLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  D  S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 AIDIIRSLKIEGGCNIQFALDTESSNYVVIEVN--PRVSRSS--ALASKATGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 94/285 (32%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV------------LHGNFG 63
           A+++ G K   I         D D +  L    L  D   N+            L G   
Sbjct: 580 AIKETGHKAIIINNNPETVSTDFDTADKLYFEPLHIDDVMNIVNREKVEGVIVQLGGQTS 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +   + ++I  +    +  A   DK R      +   P   +++       +   
Sbjct: 640 INLAQKLYEKGVKILGSSFEAIDLAEDRDKFRKFLQKLNIPSPTGTAVISIEEAYMAVEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + V+   + +   + ++   +    +LI++Y+ G E+    + 
Sbjct: 700 LQYPVVVRPSYVIGGRAMEVVYDKKGLTKYMNEAVQVSTDHTILIDRYIKGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  +    +        + +   G+
Sbjct: 760 DGEDILMPGIMEHVERTG---VHSGDSITVYPYMTLKEETINTLIEYTKKITKNMNIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               ++FD     V+ +E+N +   T     P ++   G    ++
Sbjct: 817 VNIQYVFD--GNNVYVIEVNPRASRT----VPILSKVTGVPMVKI 855


>gi|90406900|ref|ZP_01215091.1| carbamoyl-phosphate synthase large subunit [Psychromonas sp. CNPT3]
 gi|90311942|gb|EAS40036.1| carbamoyl-phosphate synthase large subunit [Psychromonas sp. CNPT3]
          Length = 1076

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++A  +P     
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPIHWKVVEKIIAKERPCAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+   +    +   A   + D+ R    + S G+    +  
Sbjct: 89  TMGGQTALNCALELEQKGVLKKYNVEMIGATADAIDKAEDRSRFDAAMKSIGLECPRAGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +       ++  P +I+P       G  +    +          S +   +LLI++
Sbjct: 149 AHNMQEAYGVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEDICSNGLSLSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDSNDNCIIVCCIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGINPVDGRMVLIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.6 bits (93), Expect = 0.27,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 91/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   GF+   +           D+             V  ++   KP        G   
Sbjct: 587 ALRADGFETIMVNCNPETVSTDYDISDRLYFESITLEDVLEIVRIEKPQGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + + I  T    +  A   ++ +          P   ++L     +     
Sbjct: 647 LKLARALEEQGVPIIGTSPDAIDCAEDRERFQKIVQGLGLKQPDNDTVLSLDGALLVAKR 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D  +     +    ++   +L+++++D       V  
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYDDVDLTRYFSEVVDASNTSPILLDRFLDD---AIEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T++ +     +  +    S +S   LPA     +I  E++         +G  G
Sbjct: 764 DAICDGTDVVIGGIMEHIEQAGVHSGDSACSLPAHTLSQEIQDEMRVYIKALALELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  +         +++ +E+N +   T     P ++   G    ++   
Sbjct: 824 LMNTQLAV--KDNEIYMIEVNPRAART----VPFVSKATGVPIAKIAAR 866


>gi|22299875|ref|NP_683122.1| carbamoyl phosphate synthase large subunit [Thermosynechococcus
           elongatus BP-1]
 gi|22296060|dbj|BAC09884.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Thermosynechococcus elongatus BP-1]
          Length = 1100

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILINSNPATIMTDPEIADRTYIEPLTPEMVEKVIAAERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A  ++ D+   K+ +   GV VCPS L
Sbjct: 89  TMGGQTALNLAVALAKSGVLDRYGVELIGAKLPAIEMAEDRKLFKEAMQRIGVAVCPSGL 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N               P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ANTLEEARAIAQEIGVYPLIIRPAFTLGGTGGGIAYNQEEFEAIATAGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEYELEVMRDMADNVVIICSIENIDPMGIHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKIIREIGVETGGSNIQFAVNPETGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 37.9 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 22/172 (12%), Positives = 59/172 (34%), Gaps = 7/172 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +   +  +     G  +LI++Y++   +   
Sbjct: 728 AERIGYPVVVRPSYVLGGRAMEIVYSNGELERYMNAAVQVEPGRPILIDKYLEN-AIEVD 786

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A    T +     +       +S  ++  +    +   + + ++  +    QA+  
Sbjct: 787 VDAIADATGTVVIGGIMEHIEQAGIHSGDSACSLPTQSLSPAVLQTIRTWSIALAQALKV 846

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+            +V+ LE N +   T     P ++   G    ++   +
Sbjct: 847 VGLMNLQLAV--QGDQVYILEANPRASRT----VPFVSKAIGIPLAKVAARL 892


>gi|253998665|ref|YP_003050728.1| urea carboxylase [Methylovorus sp. SIP3-4]
 gi|253985344|gb|ACT50201.1| urea carboxylase [Methylovorus sp. SIP3-4]
          Length = 1208

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 65/186 (34%), Gaps = 16/186 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+ +I  ++ +          +  +      Y++      
Sbjct: 146 HAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGLYLEKYVEAA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +           V         ++  +       PA    + I +++   A     AI
Sbjct: 206 RHIEVQIFGDGAGHVVALGERDCSVQRRNQKVIEETPAPNISEAIRQQLAETAVRLASAI 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G R     +F++D  S   ++LE+N +     G+T +         +G    +L+ WM+ 
Sbjct: 266 GYRSAGTVEFVYDNASGDFYFLEVNTRLQVEHGVTEL--------VSGV---DLVGWMIR 314

Query: 295 DASCLR 300
            A+  R
Sbjct: 315 LAAGER 320


>gi|254180207|ref|ZP_04886806.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1655]
 gi|184210747|gb|EDU07790.1| carbamoyl-phosphate synthase, large subunit [Burkholderia
           pseudomallei 1655]
          Length = 1084

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 90/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +         D +              V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPNTADVTYIEPITWEVVERIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +LE   +    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLFRHGVLEKYGVELIGASPEAIDKAEDRQKFKDAMTKIGLGSAKSGI 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALKVHADIAAATGGSGYPAVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 RELLIEESLLGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 704 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +   +  E++R      +A
Sbjct: 764 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSTQMVAELKRQTGAMAKA 820

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 821 LNVVGLMNVQFAIQQVPRPDGSKEDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 876

Query: 291 W 291
            
Sbjct: 877 R 877


>gi|190574173|ref|YP_001972018.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190012095|emb|CAQ45717.1| putative carbamoyl-phosphate synthase large chain [Stenotrophomonas
           maltophilia K279a]
          Length = 1080

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      +V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T+D    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVEIVSRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGINPKTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 92/291 (31%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       ++  +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNDQEALLLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   + C V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGEADLARYVRDAVKVSNDSPVLLDRFLDN-AVECDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +     +       +S  +S  + P  +  +   E++R      +A+   G+
Sbjct: 767 IADKEGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVELAKALNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     D  +  ++ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQTSDEGADTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873


>gi|71891910|ref|YP_277640.1| carbamoyl-phosphate synthase, large chain [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71796016|gb|AAZ40767.1| carbamoyl-phosphate synthase, large chain [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 1075

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D            + +  ++    PD   +
Sbjct: 29  SGAQACKALREEGYRIILVNSNPATIMTDPDMADVTYIEAIQWKIIHKIIEKEHPDALLS 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     IL+   I    + I +   + D+ + ++ +    +    S  
Sbjct: 89  TMGGQTALNCTLDLERHGILKKFNIITIGATIDSICKAEDRQKFRESMKKISLETARSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     I  P +I+P       G  V    +                +LLI++
Sbjct: 149 ARDIDEAMMVLEKIGLPCIIRPSFTLGGTGGGVAYTQEEFEKLCRYRLDSYPHHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVIRDIKDNCIIVCSIENVDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G +   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IMVLREIGVETGGANVQFAVNPNNGRLIVVEMN--PRVSRSS--ALASKATGFPIAKIAS 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 93/291 (31%), Gaps = 33/291 (11%)

Query: 22  CASA--LEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             +A  L ++G+ V  +           D+             +  ++   KP       
Sbjct: 583 VHAAITLRESGYHVIMVNCNPETVSTDYDISDILYFEPITLEDILEIIRINKPTGVIVQY 642

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G      + +     + I  T    +  A + ++ +          P   +++  +  +
Sbjct: 643 GGQTPLKLVKEMEASGISIIGTSPDAIDQAENRERFQRSIKCLGLQQPDNATVISIQSAL 702

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++  ++ +      +   ++   +L++ +++  IE+
Sbjct: 703 KKAKNIGYPIVVRPSYVLGGRAMEIVYNEKELLFYFKNAILVSNNAPVLLDSFLENAIEV 762

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +   Y   +S  ++  +    +  +I   ++         
Sbjct: 763 DVDAICDGKQVFIGGIM---EHIEYAGIHSGDSACSLPAHTLSKNIQDRIRCQVKELAFK 819

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +G+    F       +++ +EIN +   T     P ++   G    ++
Sbjct: 820 FNIKGLVNIQFAI--QKDEIYIIEINPRASRT----IPFVSKATGMELAKI 864


>gi|281355629|ref|ZP_06242123.1| urea carboxylase [Victivallis vadensis ATCC BAA-548]
 gi|281318509|gb|EFB02529.1| urea carboxylase [Victivallis vadensis ATCC BAA-548]
          Length = 1199

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V + D  +     +    +  +      +V+       
Sbjct: 147 ARGIGYPVMLKSTAGGGGIGMCVCRSDAELAAGFERIGRLSRNNFKDSGLFVEKYVECSR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH-QAIG 239
            +           V          +  +       PA    +  +     A     + + 
Sbjct: 207 HIEVQLFGDGRGHVAILGERDCSTQRRNQKVIEETPAPGLPEATRAALHAAARRLGEGVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  +   ++LE+N +     G+T         A  G    +L+ WM+ +
Sbjct: 267 YRSAGTVEFIYDCRTGDFYFLEVNTRLQVEHGVTE--------AVFGI---DLVKWMILE 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGN 319


>gi|323127062|gb|ADX24359.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 1058

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q     +      E+  T    +  A   D+ +         +P    +
Sbjct: 90  LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A + D+            P   +       + +  
Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 HIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTTVKASPEHPVLIDSYIVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGESVLIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|307721399|ref|YP_003892539.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas
           autotrophica DSM 16294]
 gi|306979492|gb|ADN09527.1| carbamoyl-phosphate synthase large subunit [Sulfurimonas
           autotrophica DSM 16294]
          Length = 1085

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 86/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+                    +    +  ++     D    
Sbjct: 29  SGTQAVKTLKELGYRVILINSNPATIMTDPEFADRTYIEPIKEDVIAKIIKDENVDAVLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    +  +    + +       G    A++  + R     +   + +      +  
Sbjct: 89  TMGGQTALNVAMSMYEKGMLEGIEFLGAKPEAINKGEDRQLFNEAMTKIGMDLPKSRNAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++    I  P + +     +  G  V    +       +  S +  +++ I + +
Sbjct: 149 SVEEAIEVVKEIGFPVISRASFTLAGGGSGVAYNMEEFKKLAQEGISASPVNEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +F    +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKADNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREVGVDTGGSNVQFSIDPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 94/262 (35%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+ +  PD    ++H        +   L  +    + +      L+ D
Sbjct: 616 FEPIDF-EHVREVIENENPDGI--IVHFGGQTPLKLADSLTKIGAKISGTPSSVIDLAED 672

Query: 93  KMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V +  +    +        +    + +  P +++P       G+ ++  +  +
Sbjct: 673 REQFSDFVKAHNLKQPANGLARTKEESYVIANKLGYPVLVRPSFVLGGRGMRIVYSEDEL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +  + S ++   +LI++++D  IEL    + D +       +   +           
Sbjct: 733 RQYMDLAISVSNEAPVLIDKFLDQAIELDVDCICDGTDVYIGSVMQHIEEAGIHSG---D 789

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++ ++V++   +    +G RG+    +       +++ +E+N +   T
Sbjct: 790 SACSLPPMNLSKEMIEKVEQQTKVIALGLGVRGLMNVQYAI--YQDEIYLIEVNPRASRT 847

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 848 ----VPFVSKATGMPLAKVATR 865


>gi|251782209|ref|YP_002996511.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242390838|dbj|BAH81297.1| carbamoyl-phosphate synthase large chain [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
          Length = 1058

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYQVVLVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q     +      E+  T    +  A   D+ +         +P    +
Sbjct: 90  LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMKELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/290 (11%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A + D+            P   +       + +  
Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKALKALGIPQPPGQTATNEAEALAAAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 HIGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGESVLIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+      +V+ +E+N +   T     P ++        ++   +
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKL 859


>gi|327441130|dbj|BAK17495.1| carbamoylphosphate synthase large subunit [Solibacillus silvestris
           StLB046]
          Length = 1065

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G+KV  I+ +                       V  +L   +PD   + 
Sbjct: 30  GTQACLSLKEEGYKVILINSNPATIMTDTEIADKVYIEPISLEFVSRILRKERPDAILST 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNMAIELDESGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   DQ +   +     ++   Q L+E+ 
Sbjct: 150 HNMEEAKAFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLQEIVTSGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                 +  + ++ ++
Sbjct: 210 IAGFKEIEYEVMRDAADNAIVVCNMENFDPVGIHTGDSIVVAPTQTLSDRE-NQMLRNIS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/279 (10%), Positives = 90/279 (32%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A + +K  +         P   +       M     
Sbjct: 640 INLADKLEANGVKILGTTLEDIDRAENRNKFETALQELKIPQPPGDTATSAEGAMKIAEG 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNMEELAHYMTNAVEASPDHPVLVDRYLTGQEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + +   P K+     + +        + +G  G+
Sbjct: 760 DGENVLIPGIMEHVERAG---VHSGDSISVYPPQKLTDAQKEILVDYTTRLAKGLGIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +++ +E+N       P ++ ++  P  
Sbjct: 817 MNIQYVMSE--GEIYVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|320329992|gb|EFW85979.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1073

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|320322539|gb|EFW78632.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. B076]
          Length = 1073

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACRALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G+    S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGLACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|172036953|ref|YP_001803454.1| carbamoyl phosphate synthase large subunit [Cyanothece sp. ATCC
           51142]
 gi|171698407|gb|ACB51388.1| carbamoyl-phosphate synthase, large subunit [Cyanothece sp. ATCC
           51142]
          Length = 1081

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+A  +P+    
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPEMANRTYIEPLTPDMVEKVIAKERPNALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A  ++ D+   K  ++  GVPVCPS +
Sbjct: 89  TMGGQTALNVAVALAKNGVLDKYNVELIGAKLPAIEMAEDRELFKDAMAKIGVPVCPSGI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           + S P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTLKEAKAIGEEIGSYPLIIRPAFTLGGTGGGIAYNQEEFEEMAQFGIDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SQAIIREIGVETGGSNIQFSVNPTNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 38.3 bits (87), Expect = 1.3,   Method: Composition-based stats.
 Identities = 24/258 (9%), Positives = 69/258 (26%), Gaps = 15/258 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++    P        G       V     L          +          ++ 
Sbjct: 622 KEDVLNIIETENPVGVIIQFGGQTPLKLAVPLQTYLDSPQCPVQTKIWGTSPDSIDTAED 681

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHL--------ISPPYVIKPLKGGSSLGIIVIKKDQSI 150
                 +     I      +   +         I  P V++P        + ++  D+ +
Sbjct: 682 RERFEKILHNLDIKQPPNGISRSYEESLAVSSRIGYPVVVRPSYVLGGRAMEIVYSDEEL 741

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              +  +        +LI+++++   +   V          +     +       +S  +
Sbjct: 742 ERYMTYAVQVEPDHPILIDKFLEN-AIEVDVDALCDTTGKVVIGGIMEHIEQAGVHSGDS 800

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  V    +   + + ++        ++   G+    +       +V+ LE N +   T 
Sbjct: 801 ACSVPYTTLSKSVIETIRTWTVALANSLKVVGLMNIQYAV--QGEQVYILEANPRASRT- 857

Query: 271 VSIFPEMAAYAGYSFREL 288
               P ++   G    ++
Sbjct: 858 ---VPYVSKATGRPLAKI 872


>gi|56708675|ref|YP_170571.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110671147|ref|YP_667704.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134302748|ref|YP_001122716.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|224457882|ref|ZP_03666355.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|254371307|ref|ZP_04987309.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254875549|ref|ZP_05248259.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|56605167|emb|CAG46297.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis SCHU S4]
 gi|110321480|emb|CAL09680.1| Carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC198]
 gi|134050525|gb|ABO47596.1| Carbamoyl-phosphate synthase, large subunit [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|151569547|gb|EDN35201.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254841548|gb|EET19984.1| carbamoyl-phosphate synthase large chain [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|282159922|gb|ADA79313.1| carbamoyl phosphate synthase large subunit [Francisella tularensis
           subsp. tularensis NE061598]
          Length = 1094

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTTDKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQSLEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFEKIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/326 (12%), Positives = 97/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + +I  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIIHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +S       +LI+++++       V   A            +       +
Sbjct: 746 QEELDAYIKTNSKCILEGPILIDKFLE-DATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSNEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGQLYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|322411552|gb|EFY02460.1| carbamoyl phosphate synthase large subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 1058

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYQVILVNSNPATIMTDKEIADKVYIEPLTIEFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q     +      E+  T    +  A   D+ +         +P    +
Sbjct: 90  LGGQTGLNMAMQLSKAGILEELGIELLGTKLSAIDQAEDRDQFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 TSVEEAVAFAQTIGYPVIVRPAFTLGGTGGGMCANENELREIAESGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        +    ++ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDSEHQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A + D+            P   +       + +  
Sbjct: 639 AINLAQALSEAGVTILGTQVDDLDRAENRDQFEKTLKALGIPQPPGQTATDEAEALAAAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P +++P        + +++  + +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 HTGFPVLVRPSYVLGGRAMEIVENAEDLQRYMKTAVKASPEHPVLIDSYIVGKEFEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGESILIPGIMEHIERAG---VHSGDSMAVYPPQGLSKQIQETITDYTRRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|241889438|ref|ZP_04776739.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans
           ATCC 10379]
 gi|241863981|gb|EER68362.1| carbamoyl-phosphate synthase, large subunit [Gemella haemolysans
           ATCC 10379]
          Length = 1058

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + + +   + D+   R      +  VP    I
Sbjct: 90  LGGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   ++ +   +     ++   Q L+E+ 
Sbjct: 150 TTLDEAREFVAEIGYPVIVRPAFTMGGTGGGICYNEKDLEEIVSSGLHYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPDSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++ H  P        G   
Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    + +A   DK            P+  +       + +   
Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +        +L ++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +      ++        + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
               ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858


>gi|304405832|ref|ZP_07387490.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
 gi|304345075|gb|EFM10911.1| urea carboxylase [Paenibacillus curdlanolyticus YK9]
          Length = 1217

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/269 (15%), Positives = 90/269 (33%), Gaps = 19/269 (7%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            ++  + L +A      A +  +G   E+           I +         +   K  +
Sbjct: 60  YLNADLILQIAEETGAQAIHPGYGFLSENAGFARACRERGIAFIGPTPEQMEMFGLKHSA 119

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +++    GVP+ P   +      +     +I  P ++K   GG  +G+ V +++Q +   
Sbjct: 120 RELAEKAGVPMLPGTPLITELEQAVSAASVIGYPVILKSTAGGGGIGMRVCEEEQELRSA 179

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
                     +      +++        +           V         ++  +     
Sbjct: 180 FESVRHLAETNFKNGGVFLEKYIAKARHVEVQIFGNAFGEVVALGERDCSIQRRNQKVIE 239

Query: 214 VLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGM 268
             P  K    + + +   A       G R     +FL+DP S + ++LE+N +     G+
Sbjct: 240 ESPAPKFAQAVRERMFEAARSLAAEAGYRSAGTVEFLYDPQSSEFYFLEVNTRLQVEHGV 299

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           T            G    +L+ WMV++A+
Sbjct: 300 TE--------EVLGL---DLVEWMVKEAA 317


>gi|266621406|ref|ZP_06114341.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
 gi|288866920|gb|EFC99218.1| carbamoyl-phosphate synthase, large subunit [Clostridium hathewayi
           DSM 13479]
          Length = 1064

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 34/297 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFSREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++       ++ H 
Sbjct: 641 IKLTESLMKMGVPILGTAAEDVDAAEDRELFDKILEECRIPRPAGHTVFTAEEAKEAAHK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   DQ +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAISDQDVDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +    +   +        S          +  ++    +        +A+  +G+
Sbjct: 761 DGTDILIPGIMQHIERTGIHSGDSISVYPAPDLTEKNIET---LVDYTEKLARALHVKGM 817

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               F+ D     V+ +E+N +   T     P ++   G     L   ++    C R
Sbjct: 818 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII----CGR 864



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/317 (11%), Positives = 97/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  ++           +    +  L    + D+   K+ +      V     +
Sbjct: 90  LGGQAGLNLAMELEDAGFFRDHNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  + +  +     L      +   Q+L+E+ 
Sbjct: 150 EDVKHGLEIAAEIGYPVVLRPAYTLGGSGGGIAENPEQCAEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISELGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341


>gi|253828045|ref|ZP_04870930.1| carbamoylphosphate synthetase large subunit [Helicobacter
           canadensis MIT 98-5491]
 gi|253511451|gb|EES90110.1| carbamoylphosphate synthetase large subunit [Helicobacter
           canadensis MIT 98-5491]
          Length = 1092

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  I         D +              +  ++   K D    
Sbjct: 29  SGTQAAKTLKKLGYRVVLINSNPATIMTDPNLADRTYIEPITEEVIANIIKQEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE ++    +   +         +   +     +P      
Sbjct: 89  TMGGQTALNVAMSMYEKGMLEGVKFLGANPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V                 +   ++LIE+ +
Sbjct: 149 TIEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKTLAQNGLDTSPISEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 88/262 (33%), Gaps = 16/262 (6%)

Query: 32  KVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            V   +      V  V+   KPD    ++H        +   L  +      +      +
Sbjct: 618 DVLYFEPITFECVRSVIEREKPDGV--IVHFGGQTPLKLAKKLTTIGAKIIGTSAKTIDI 675

Query: 90  SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+ +  + V   G+      +       ++    I  P +++P        + ++   
Sbjct: 676 AEDREKFAKFVEENGLLQPKNGTAFTKEEAIEIAQNIGFPVLVRPSYVLGGRAMRIVYNV 735

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             +   + ++ S +    +LI+++  + +EL   V+ D         +   +        
Sbjct: 736 AELQNYMSEAVSVSEDSPVLIDKFLNNALELDVDVICDGKDVYIAGIMQHIEEAGIHSG- 794

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              ++  +    I  +  KE++       + +G  G+  + +     +  ++ +E+N + 
Sbjct: 795 --DSACSIPTISISKEKIKEIEETTAKIARNLGVVGLMNTQYAIFEET--LYLIEVNPRA 850

Query: 267 GMTPVSIFPEMAAYAGYSFREL 288
             T     P ++   G    ++
Sbjct: 851 SRT----VPFVSKATGIPLAKV 868


>gi|224419109|ref|ZP_03657115.1| carbamoyl phosphate synthase large subunit [Helicobacter canadensis
           MIT 98-5491]
          Length = 441

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  I         D +              +  ++   K D    
Sbjct: 29  SGTQAAKTLKKLGYRVVLINSNPATIMTDPNLADRTYIEPITEEVIANIIKQEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE ++    +   +         +   +     +P      
Sbjct: 89  TMGGQTALNVAMSMYEKGMLEGVKFLGANPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V                 +   ++LIE+ +
Sbjct: 149 TIEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKTLAQNGLDTSPISEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEFEMEVIRDKSDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324


>gi|323482996|ref|ZP_08088392.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum
           WAL-14163]
 gi|323403702|gb|EGA96004.1| hypothetical protein HMPREF9474_00141 [Clostridium symbiosum
           WAL-14163]
          Length = 1123

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 97/293 (33%), Gaps = 32/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L+ AG++V  ++ +                       V  ++   KP  A     G
Sbjct: 601 CVWSLKRAGYEVVIVNNNPETVSTDFNVADRLYFEPLTPEDVMDIIRVEKPAGAVVAFGG 660

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                     +   + +  T +  +  A    +  +     +   P   ++      + +
Sbjct: 661 QTAIRLTKCLVENGVPVLGTPADSIDMAEDRGRFNALLKKLNMKQPSGDTVYTEDEAIAT 720

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P        +I+   D  I   +         + +LI++Y+ G EL   
Sbjct: 721 ANRLGYPVLVRPSYVLGGQNMIIAYHDADIHEYMKIILEHKIENAILIDKYLMGTELEVD 780

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  V PA +  +     +   +     ++G
Sbjct: 781 AICDGEDVLI----PGIMEHIERAGVHSGDSIAVYPAFMLTESQKDRIVDYSIRLALSLG 836

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +G+    ++    +  ++ +E+N +   T     P ++   G    +L   +
Sbjct: 837 TKGLINIQYVLHEDT--IYIIEVNPRSSRT----VPYISKVTGVPMVDLATRI 883



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       V  ++   KPD   + 
Sbjct: 56  GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRIIDKEKPDSILST 115

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    ++      LE   +    +       + D+   K  +   G PV PS  +
Sbjct: 116 LGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTMEEIGEPVIPSEVV 175

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M     I  P +++P       G  + K  + +          +   Q+L+E+ 
Sbjct: 176 TTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIRLSPIHQILVEKC 235

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+          +F      ++  +        +    Y+ ++  A
Sbjct: 236 IAGWKEIEFEVMRDSVGNEITVCSMENFDP-VGIHTGDSIVIAPAVTLADKEYQMLRSAA 294

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+G  G     F  +P S +   +E+N  P ++  S     +   GY    +   
Sbjct: 295 LNIIQAMGIEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARVATK 350

Query: 292 M 292
           +
Sbjct: 351 I 351


>gi|319941333|ref|ZP_08015664.1| carbamoyl-phosphate synthase [Sutterella wadsworthensis 3_1_45B]
 gi|319805254|gb|EFW02077.1| carbamoyl-phosphate synthase [Sutterella wadsworthensis 3_1_45B]
          Length = 1081

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 83/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G++V  +         D               +V  ++   +PD    
Sbjct: 29  SGVQACRVLREEGYRVILVNSNPATIMTDPKTADATYIEPITWETVARIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L        G    A+   + R +       + +  +    
Sbjct: 89  TMGGQTALNCAMDLVHHGVLRRWGVELIGATPEAIDKAEDRERFKKLMTEIGLESARSGA 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P VI+P       G  +          + +    +   ++LIE+
Sbjct: 149 AHTLEEAFAIQKTVGFPAVIRPSFTLGGTGGGIAYNMDEFLEIVSRGLELSPTSEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQAMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 MAVLRAIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.2 bits (92), Expect = 0.41,   Method: Composition-based stats.
 Identities = 31/260 (11%), Positives = 81/260 (31%), Gaps = 14/260 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP        G              + I  T    + 
Sbjct: 611 DRLYFEPVTL---EDVLAICEIEKPQGVIVQYGGQTPLKICRALEAHGVPIIGTTPDAID 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P           +     I  P V++P        + ++  
Sbjct: 668 CAEDRERFQKLINQLGLLQPPNRIAHTEDEALAKAEEIGYPIVVRPSYVLGGRAMEIVHT 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   + ++   +  + +L+++++D  +E+    + D  +      +   +       
Sbjct: 728 PERLVKYMREAVKVSPEEPVLLDRFLDDAVEMDVDAVCDGDVVAVAGVMEHIEQAG---V 784

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEI 262
           +S  ++  + P  +   +  E++R      +A+   G+    F           V+ LE+
Sbjct: 785 HSGDSACSLPPYSLAPSLVAEIRRETRELAKALKVVGLMNVQFAVKNAHTEEPVVYVLEV 844

Query: 263 NVQPGMTPVSIFPEMAAYAG 282
           N +   T     P ++   G
Sbjct: 845 NPRASRT----VPFVSKATG 860


>gi|225568839|ref|ZP_03777864.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM
           15053]
 gi|225162338|gb|EEG74957.1| hypothetical protein CLOHYLEM_04918 [Clostridium hylemonae DSM
           15053]
          Length = 1074

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 102/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRGLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAKAGVLEKYNVQVIGVQVDAIERGEDRIEFKKAMDSLGIEMAKSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYSVEEALAIADELGYPVVLRPAYTMGGAGGGLVYNKDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   S +         +       ++  +        I  +  K +Q  
Sbjct: 209 SILGWEELELEIVRDSENNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEECQKRLQEQ 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +++   G +   F  DP+S ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 268 AYKIVESVQVIGGTNVQFAHDPVSDRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 45/291 (15%), Positives = 90/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPLGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T   ++  A   D  R         +P           +     
Sbjct: 641 LNLASELEKNGVRILGTSPSVIDLAEDRDLFREMMEKLDIPMPESGMATTVDEALAIAER 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDDESMVSYMNAAVGVTPDRPILIDRFLN---HATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P   I  D  + ++       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSVHISDDNVQTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     + KV+ LE N +   T     P ++         L   ++
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLATDII 862


>gi|145349915|ref|XP_001419372.1| Carbamoyl-phosphate synthase L chain [Ostreococcus lucimarinus
           CCE9901]
 gi|144579603|gb|ABO97665.1| Carbamoyl-phosphate synthase L chain [Ostreococcus lucimarinus
           CCE9901]
          Length = 1105

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ +                      SV  ++A  KPD    
Sbjct: 45  SGTQACKALRAEGYEVVLVNSNPATIMTDPETASRTYVTPMSPESVEQIIAREKPDALLP 104

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +         IL    +    + + A   + D+   K  +   G+    S  
Sbjct: 105 TMGGQTALNLTKALAESGILAKYNVELIGAKLDAINKAEDRQLFKDAMDKIGLNTPKSGT 164

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +    +  + + P +I+P       G  +          +      +   Q+LIE
Sbjct: 165 AETWAQAQTIAADIGTMPLIIRPAFTLGGSGGGIAYNMAEFENIVKGGLDASATSQVLIE 224

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +F    +      +          +  +    
Sbjct: 225 QSLLGWKEYELEVMRDLADNVVIVCSIENFDPMGVHTGDSITVAPAETLTDKEYQRLRDA 284

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S      +P+  +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 285 SVAIIREIGVECGGSNVQMAVNPVDGQVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 340

Query: 290 LWM 292
             +
Sbjct: 341 AKL 343



 Score = 40.2 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 22/174 (12%), Positives = 60/174 (34%), Gaps = 13/174 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + ++     +   +  +   +    +L+++Y  +  E+ C
Sbjct: 736 AEKLGYPVMVRPSYVLGGRAMEIVGSTADLKRYINTAVEVDPERPVLVDKYLQNATEIDC 795

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAI 238
             + D   +V    +     +  +    S +S   LP +   +     ++       + +
Sbjct: 796 DALCDMEGNVVIGGI---MEHIEQAGVHSGDSACSLPTQTIPESALATIREWTPKLARRL 852

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           G  G+    +   P     + +E N +   T     P +A   G+    +  L+
Sbjct: 853 GVVGLINIQYAVTP-DGTPYIIEANPRASRT----VPFVAKAIGHPLAKYASLV 901


>gi|319649635|ref|ZP_08003791.1| carbamoyl-phosphate synthase large subunit [Bacillus sp.
           2_A_57_CT2]
 gi|317398797|gb|EFV79479.1| carbamoyl-phosphate synthase large subunit [Bacillus sp.
           2_A_57_CT2]
          Length = 1070

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACIALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDALVPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNLAVELAESGVLEECGVEILGTKLSAIQKAEDRDLFRNLMNELGEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                     + I  P +++P       G  +   ++ +   +      +   Q L+E+ 
Sbjct: 150 HNLEEAYKFVNRIGYPVIVRPAFTLGGTGGGICHDEEELIEIVTSGLKNSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   + +     ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENFDPVGVHTGDSIVVAPSQTLSDREYQLLRNTS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 91/279 (32%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +     +   ++I  T    +  A   DK           +P   + L     +     
Sbjct: 640 INLAADLVKRGVKILGTSLENVDRAEDRDKFEQALAELGIPMPKGKTALSVEQAVAVAGE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++ K+  +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVYKEAELLHYMENAVKVNPEHPVLIDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  I   I  ++        + +G  G+
Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSIAVYPPQNISEAIKDKLVEYTEKMAKGLGIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +V+ LE+N       P ++ ++  P  
Sbjct: 817 LNIQYVV--AKGEVYVLEVNPRSSRTVPFLSKITNVPMA 853


>gi|257468416|ref|ZP_05632510.1| carbamoyl phosphate synthase large subunit [Fusobacterium ulcerans
           ATCC 49185]
 gi|317062685|ref|ZP_07927170.1| carbamoyl-phosphate synthase subunit large [Fusobacterium ulcerans
           ATCC 49185]
 gi|313688361|gb|EFS25196.1| carbamoyl-phosphate synthase subunit large [Fusobacterium ulcerans
           ATCC 49185]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  +L   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMNILEKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       +++  T +  +  A   ++            P   ++      ++  +
Sbjct: 641 AIKLANDLSDRGIKVIGTSADKIDEAEDRERFEEMMEELDIARPKGRAVWDVEHGIEIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I+ P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIEL    +
Sbjct: 701 EINYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFDRDPSNPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +   +    E+  +     +A+  +
Sbjct: 761 CDGEDILI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEAELLEITKRIAKALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           G+    F+      K++ +E+N       P ++ VS  P
Sbjct: 817 GMMNIQFI--AYENKLYVIEVNPRSSRTVPYISKVSGVP 853



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 90/303 (29%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+A  +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITADFVEKVIAKERPDSILA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + ILE   +    + I +     D+   R         +     
Sbjct: 88  GMGGQTALNMAVELSEKGILEKYGVKVIGTPIESIKRGEDRELFREAMEKIGEPIIQSKI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P V++P       G       + +   L++  + +   Q+LIE+
Sbjct: 148 VENLEDGFKVAREIGYPVVVRPAYTLGGTGGGFAYNPKELEDILMKGLALSRVKQVLIEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++ 
Sbjct: 208 SILG--WKEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 SAIKIVNEIGVIGGCNVQFSLHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TRL 324


>gi|330877244|gb|EGH11393.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 1073

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPAMADATYIEPIKWQTVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + +LE   +    +       + D+ R  + + S G     S  
Sbjct: 89  TMGGQTALNCALDLEREGVLEKFGVEMIGANADTIDKAEDRSRFDKAMKSIGQACPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGIAYNREEFEEICARGLDLSPTKELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQILRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPRGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 707 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 766

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 767 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 823

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 824 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 861


>gi|227824462|ref|ZP_03989294.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21]
 gi|226904961|gb|EEH90879.1| carbamoyl-phosphate synthase [Acidaminococcus sp. D21]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 95/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  V+   +PD     
Sbjct: 30  GTQACRALKEEGLEVVLVNSNPATIMTDVHIADRVYVEPLNVEFLESVIQKERPDSLLAT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + I +   + D+   +         +P    +
Sbjct: 90  LGGQIGLNLAIELDKTGILKKYNVKLIGTQIPSIMKAEDRELFKETMEKLHQPIPQSTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +   D  +     +   ++   Q+LIE+ 
Sbjct: 150 ESVAAAKEFADRIGYPLIVRPAYTLGGTGGGIAHNDAELDDICTKGLQYSLIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +     +                 ++   ++  A
Sbjct: 210 VAGWKEIEFEVIRDHADNCITVCNMENLDPVGVHTGDSIVVAPCQTLTDREVQM-LRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 IDIVRELGVEGGCNVQYALNPDSEEYIVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M--------VEDASCLR 300
           +        +E+A   +
Sbjct: 325 IAAGYTLDEIENAVTKK 341



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 89/288 (30%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   I         D D              V  V+   +P+       G   
Sbjct: 580 ALKEEGYETIIINNNPETVSTDFDTADRLYFEPLTLEDVLNVIDREQPEGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            P   ++      + + H 
Sbjct: 640 INLAGPLHSCGVKILGTSVDDIDRAEDRERFDEVLTEVGIPRPKGHTVFDVEGAVKAAHD 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P +++P        + ++  D  +   +  +   +    +L++ Y+ G E+    + 
Sbjct: 700 DGYPVMVRPSYVLGGRAMEIVYNDDQLRYYMANAVKASKEHPVLVDHYLMGTEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +   I + +          +  +G+
Sbjct: 760 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPRTLSEHIIEAIIEYTNKLALTLHVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               ++      K++ +E+N +   T     P ++   G S  ++   
Sbjct: 817 LNIQYIV--RDEKLYIIEVNPRSSRT----VPFLSKVTGISMVDVATK 858


>gi|163794417|ref|ZP_02188388.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium
           BAL199]
 gi|159180141|gb|EDP64664.1| Carbamoylphosphate synthase large subunit [alpha proteobacterium
           BAL199]
          Length = 1089

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPEMVRRVIERERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G               LE   +    + + A   + D+ + +  + + G+    S +
Sbjct: 89  TMGGQTALNIARALARDGTLEEFGVELIGADLAAIEKAEDRQQFRVAMDAIGLDTPRSRM 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +F   ++ L     P +I+P       G  +    +     +      +  +++L+E+
Sbjct: 149 IGKFEEAAEALDHVGLPAIIRPSYTMGGQGGGIAYNREEFEQIVQNGLRLSPSNEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVIRDRADNCIIVCSIENIDPMGIHTGDSMTVAPALTLTDKEYQRMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVDPATGRQIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 100/326 (30%), Gaps = 51/326 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL DAGF+   +         D D S 
Sbjct: 573 IVILGGGPN-------RIGQGIEFDYCCVHAAYALSDAGFETIMVNCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL----------------LEIPYTHSGILA 86
            L    L  +    ++ G      ++  I++                 + I  T    + 
Sbjct: 626 RLYFEPLTIEDVIELVDGERANGEVLGVIVQFGGQTPLKLAAALEKAQIPILGTSPDAID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   +             I  P VI+P        + ++  
Sbjct: 686 LAEDRERFQKLLHKLKLRQPENGTATSTEQAEKVADTIGYPVVIRPSYVLGGRAMEIVHD 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   +  +   +  + +LI+ +     E+    + D +       +   +       
Sbjct: 746 IEGLRRYMSNAVVVSGKNPVLIDSFLRSATEIDVDAVCDGTDVFIAGVMEHIEEAGIHSG 805

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +P  I  EV+R   +    +G  G+    F       +VF LE+N +
Sbjct: 806 ---DSACSLPPVSLPDSIIAEVKRQTTMLAHGLGVVGLMNVQFAV--KDGEVFILEVNPR 860

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P +A   G    ++   
Sbjct: 861 ASRT----VPFVAKATGVPIAKIAAR 882


>gi|303279222|ref|XP_003058904.1| predicted protein [Micromonas pusilla CCMP1545]
 gi|226460064|gb|EEH57359.1| predicted protein [Micromonas pusilla CCMP1545]
          Length = 1107

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     V  +L   KPD    
Sbjct: 47  SGTQACKALRSEGYEVVLLNSNPATIMTDPETASRTYVGPMTPELVEEILKKEKPDALLP 106

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         ILE   +    + + A   + D+   K  ++  G+   PS  
Sbjct: 107 TMGGQTALNLTKTLAETGILEKYNVELIGAKLDAINKAEDRQLFKDAMTKIGLKTPPSGT 166

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + + + P +I+P       G  +    +     +    + +   Q+LIE
Sbjct: 167 ANTWEEALKIQEEIGNFPLIIRPAFTLGGSGGGIAYNMEEYENIVTGGLNASSTTQVLIE 226

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 227 KSLLGWKEYELEVMRDLADNVVIVCSIENLDPMGVHTGDSITIAPAQTLTDKEYQRLRDA 286

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S      +P   ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 287 SVDIIREIGVECGGSNVQMAVNPEDGELMIIEMN--PRVSRSS--ALASKATGFPIAKMA 342

Query: 290 LWM 292
             +
Sbjct: 343 AKL 345



 Score = 41.0 bits (94), Expect = 0.21,   Method: Composition-based stats.
 Identities = 21/172 (12%), Positives = 59/172 (34%), Gaps = 9/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        + ++  D  +   +  +   +    +L+++Y+        
Sbjct: 737 ANNIGYPVMVRPSFVLGGRAMEIVSSDADLKRYITTAVEVDPEKPVLVDKYL-ANATELD 795

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V      +   +     +       +S  ++  + P  I       ++       + +G 
Sbjct: 796 VDALCDAEGNVVICGIMEHIEQAGVHSGDSACSIPPQTISEKSLAIIRDWTPKVAKRLGV 855

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
            G+    +   P + +V+ +E N +   T     P +A   G+    +  L+
Sbjct: 856 IGLINIQWAVTP-NDEVYIIEANPRASRT----VPFVAKAIGHPLAKYASLV 902


>gi|326790915|ref|YP_004308736.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
 gi|326541679|gb|ADZ83538.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
          Length = 1081

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 90/298 (30%), Gaps = 32/298 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           S  A   AL+  G +   ++                      D     +    KP     
Sbjct: 577 SVHAIM-ALKKKGIETIIVNNNPETVSTDFNTSDKLYFEPLTDEDFYHIYLKEKPMGVIL 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G              + +  TH   +  A   +K            P   +I     
Sbjct: 636 QFGGQTAIKLAKFCEKMNIPVLGTHPKHMDEAEDREKFDEILEKLHIKRPKGKAIWSVEE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     +  P +++P       G+ +  +   +   L+ +   +  + +LI++Y+ G E
Sbjct: 696 GLKVAEELEYPVLVRPSYVLGGQGMEITYEAHQLERYLINAFDRDPENPVLIDRYLMGRE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +           ++T      IP  I +++     +  +
Sbjct: 756 IEVDALSDGENILIPGIMEHLERAGIHSG---DSTTLYPSVNIPDHIKEKIITCTQMLAK 812

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-LLWMV 293
            +   G+    ++       ++ +E+N +   T     P ++   G    +L +  M+
Sbjct: 813 ELKVLGMINIQYI--EYKNDLYIIEVNPRSSRT----VPYISKVTGVPIIDLAVEAML 864



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 91/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ + G +V  ++ +                       +  V+A  +PD    
Sbjct: 29  SGTQACQAIREEGIEVVLVNSNPATIMTDEEIADKIYIEPLTVEFLEKVIAKERPDSVLA 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G   SA+   + R         +         
Sbjct: 89  GVGGQTALNLAVELNDKGILEKYNVRVIGTQISAIKEGEDRELFRALMKRINQPCIESEI 148

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T+++       I  P V++P       G  + + ++ +          +   Q+LIE+
Sbjct: 149 VETVEAAVAFSRKIGYPVVVRPAYTLGGTGGGIAETEEELREICASGLHLSRVHQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G             +        +      +   + +S  V P++   D  Y+ ++R
Sbjct: 209 CIKG--WKEIEYEVMRDNYGTAITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRR 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +     A   RG         P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 267 ASLDIISACDIRGGCNVQLALHPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIARVS 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325


>gi|262282329|ref|ZP_06060097.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp.
           2_1_36FAA]
 gi|262261620|gb|EEY80318.1| carbamoyl-phosphate synthase large subunit [Streptococcus sp.
           2_1_36FAA]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFADGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAGNGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  L +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRLVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|328675203|gb|AEB27878.1| Carbamoyl-phosphate synthase large chain [Francisella cf. novicida
           3523]
          Length = 1094

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVFLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYGVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   N++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLNIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + ++  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  ++       +LI+++++       V   A            +       +
Sbjct: 746 QDELDTYIRTNAKCILEGPILIDKFLEN-ATELDVDALADGGERVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + +++ +E+N + 
Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELYVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|291528553|emb|CBK94139.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale
           M104/1]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD A     G       +   L  + +    +       + D+    ++
Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   G+P      +          + I  P +++P       G+ +   D  I   +   
Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++      +L+++Y+ G E+    + D +  +    +   +        S         +
Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +   +    +        QA+   G+    F+   +   ++ +E+N +   T     P +
Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845

Query: 278 AAYAGYSFRELLLWMV 293
           +   G    +L   ++
Sbjct: 846 SKVTGIPIVDLAARII 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                      S+  ++   KPD     
Sbjct: 30  GTQACRSLKEEGVEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                  + +++  T +  +  A      +         +     +
Sbjct: 90  LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +   +Q +   L      +   ++L+E+ 
Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|291523985|emb|CBK89572.1| carbamoyl-phosphate synthase, large subunit [Eubacterium rectale
           DSM 17629]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD A     G       +   L  + +    +       + D+    ++
Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   G+P      +          + I  P +++P       G+ +   D  I   +   
Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++      +L+++Y+ G E+    + D +  +    +   +        S         +
Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +   +    +        QA+   G+    F+   +   ++ +E+N +   T     P +
Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845

Query: 278 AAYAGYSFRELLLWMV 293
           +   G    +L   ++
Sbjct: 846 SKVTGIPIVDLAARII 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                      S+  ++   KPD     
Sbjct: 30  GTQACRSLKEEGVEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                  + +++  T +  +  A      +         +     +
Sbjct: 90  LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +   +Q +   L      +   ++L+E+ 
Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|238923139|ref|YP_002936652.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale
           ATCC 33656]
 gi|259585679|sp|C4ZEK2|CARB_EUBR3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|238874811|gb|ACR74518.1| carbamoyl phosphate synthase large subunit [Eubacterium rectale
           ATCC 33656]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KPD A     G       +   L  + +    +       + D+    ++
Sbjct: 617 EDVESIVNIEKPDGAVVQFGGQ--TAIKLTEALMKMGVKILGTKAEDVDAAEDRELFDEI 674

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +   G+P      +          + I  P +++P       G+ +   D  I   +   
Sbjct: 675 LQKTGIPRAAGGTVFTAEEAKKVANEIGYPVLVRPSYVLGGQGMKIAWNDDEIEEFIGII 734

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++      +L+++Y+ G E+    + D +  +    +   +        S         +
Sbjct: 735 NTITQDHPILVDKYLMGKEIEVDAICDGTDILIPGIMEHIERTGVHSGDSISVYPAHTIS 794

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +   +    +        QA+   G+    F+   +   ++ +E+N +   T     P +
Sbjct: 795 EKAKET---LVEYTKRLAQALHVVGMINIQFI--DMDDNIYVIEVNPRSSRT----VPYI 845

Query: 278 AAYAGYSFRELLLWMV 293
           +   G    +L   ++
Sbjct: 846 SKVTGIPIVDLAARII 861



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                      S+  ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVCLVNSNPATIMTDKQIADQVYIEPLTLESLKEIIIKEKPDSILPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                  + +++  T +  +  A      +         +     +
Sbjct: 90  LGGQAGLNLGMELAECGFLDEQGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPIAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +   +Q +   L      +   ++L+E+ 
Sbjct: 150 KNIEDGIAFTNKIGYPVVLRPAFTLGGSGGGIAHDEQELIDILSNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIINELQITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|166711938|ref|ZP_02243145.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzicola BLS256]
          Length = 1080

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|332361057|gb|EGJ38861.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1056]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVMILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIAEYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|323351423|ref|ZP_08087079.1| exopolyphosphatase [Streptococcus sanguinis VMC66]
 gi|322122647|gb|EFX94358.1| exopolyphosphatase [Streptococcus sanguinis VMC66]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ + ++   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEAALRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|171912641|ref|ZP_02928111.1| Allophanate hydrolase subunit 2 [Verrucomicrobium spinosum DSM
           4136]
          Length = 1204

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 62/184 (33%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V + D  +          +  +      +++       
Sbjct: 149 AQGIGYPVMLKSTAGGGGIGMRVCENDSDLRAQFESVQRLSMANFKDSGLFLEKFVRHAR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        E  V         ++  +       PA     +   E+   A    +A+ 
Sbjct: 209 HIEVQIFGDGEGRVLALGERDCSVQRRNQKVIEETPAPHLSSEGRAELLACAERLGKAVN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  SRK ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 269 YRSAGTVEFVYDADSRKFYFLEVNTRLQVEHGVTE--------EVLGI---DLVEWMVRL 317

Query: 296 ASCL 299
           A+  
Sbjct: 318 AAGD 321


>gi|58617380|ref|YP_196579.1| carbamoyl phosphate synthase large subunit [Ehrlichia ruminantium
           str. Gardel]
 gi|58416992|emb|CAI28105.1| Carbamoyl-phosphate synthase large chain [Ehrlichia ruminantium
           str. Gardel]
          Length = 1075

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  I+ + +                     +  ++   KP     
Sbjct: 29  SGTQACKTLKKEGYRIILINSNPATIMTDPEIADSTYIEPITTHILEKIIIKEKPSAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +   A   + D+   +Q +   G     SI+
Sbjct: 89  TVGGQTALNAAISLCNAGILEQYNVKLIGATKEAIKKAEDRNLFRQAMDRIGAKYPKSII 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P      +G  +    +    ++    + +   ++ +++
Sbjct: 149 IRSIDEINHALEYIGLPAIIRPSFTLGGIGGGISYNKEEFQKNIEYGLNISPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +         ++  K     
Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNNDILVIEMN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/225 (12%), Positives = 79/225 (35%), Gaps = 12/225 (5%)

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYV 129
           L    I    +   +  L+ D+M+ +Q++    +   P+I  N       +   +  P +
Sbjct: 659 LHQKNIRILGTSFDSIDLAEDRMKFQQLLMQLNIKQPPNITCNSKDELLKNIETLDFPIL 718

Query: 130 IKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           ++P    G     I+   +  +    +  + ++HG  LL +   + +E+    + D    
Sbjct: 719 VRPSYVLGGQSMSIIRDNNALLNYLTIHKNIFDHGSLLLDQFLTNAVEVDVDAICDGKDT 778

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                +   +       +S  ++  +    +  +    +         A+  +G     +
Sbjct: 779 YIAGIMEHIEEAG---VHSGDSACSLPAYTLTKETIDTIASYTKKISLALNVQGFINIQY 835

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                + +++ LE+N +   T     P +A   G    ++   ++
Sbjct: 836 AI--HNNEIYILEVNPRASRT----VPFIAKATGIPIAKIATEIL 874


>gi|332366727|gb|EGJ44468.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1059]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|332359676|gb|EGJ37493.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK355]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|325687612|gb|EGD29633.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK72]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|324992755|gb|EGC24675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK405]
 gi|324994599|gb|EGC26512.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK678]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|324991001|gb|EGC22935.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK353]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVAGLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGCQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|311108161|ref|YP_003981014.1| carbamoyl-phosphate synthase large chain [Achromobacter
           xylosoxidans A8]
 gi|310762850|gb|ADP18299.1| carbamoyl-phosphate synthase large chain [Achromobacter
           xylosoxidans A8]
          Length = 1079

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPRDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL D G++   +         D D S 
Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALRDDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAAEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  +  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868


>gi|125718157|ref|YP_001035290.1| carbamoyl phosphate synthase large subunit [Streptococcus sanguinis
           SK36]
 gi|167006451|sp|A3CNI5|CARB_STRSV RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|125498074|gb|ABN44740.1| Carbamoyl-phosphate synthase large chain, putative [Streptococcus
           sanguinis SK36]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|325694685|gb|EGD36592.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK150]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 79/267 (29%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P        G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIELEQPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D             P   +       +++   I  P +++P        + +++ 
Sbjct: 663 RAEDRDLFEQALKELDIQQPPGQTATNEEEAVEAARKIGFPVLVRPSYVLGGRAMEIVEN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAISDGRQVLIPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +   +   +          + C G+    F+      +V+ +E+N + 
Sbjct: 780 SGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIGMMNIQFVI--KDEQVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        ++   ++
Sbjct: 838 SRT----VPFLSKVTDIPMAQVATRLI 860


>gi|317405988|gb|EFV86266.1| carbamoyl-phosphate synthase large subunit [Achromobacter
           xylosoxidans C54]
          Length = 1080

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAEVGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL D G++   +         D D S 
Sbjct: 563 IVVLGGGPN-------RIGQGIEFDYCCVHAALALRDDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDIAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAAEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  +  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  D+  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSADVIAEIKRQTSMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868


>gi|257466976|ref|ZP_05631287.1| carbamoyl phosphate synthase large subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918117|ref|ZP_07914357.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313691992|gb|EFS28827.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 1068

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  ++   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       ++I  T +  +  A   +K            P   +       +   +
Sbjct: 641 AIKLAKDLEKRNIKILGTSAEKIDEAEDREKFEEMMESLDIKRPRGRASWDVEHGIAIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    +
Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEVNLVKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +       +E+  +     +A+  +
Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYKGTEEEILDITRKIARALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+    F+      +++ +E+N +   T     P ++  +G    E+   M
Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRT----VPYISKISGLPVIEIASRM 861



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+   +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + ILE   I    + I +     D+   R         +     
Sbjct: 88  GMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILTSHV 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P V++P       G       Q +   LL+  S +   Q+LIE+
Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++R
Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 ASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TKL 324


>gi|217968162|ref|YP_002353668.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
 gi|217337261|gb|ACK43054.1| carbamoyl-phosphate synthase, large subunit [Dictyoglomus turgidum
           DSM 6724]
          Length = 1054

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                       +  ++   KPD    
Sbjct: 26  SGTQACRALKEEGVEVVLINSNPATIMTDWEMADRIYIEPITAEVIERIIEKEKPDGIIA 85

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++     ILE   IP   + + + +++ D+   R +       V     
Sbjct: 86  TLGGQTGLNLAMELASIGILEKYGIPLLGASLESISMAEDRELFRKRMEEIGEPVLPSVV 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +  +I  P VI+P       G  +++  +     LL+S   +   Q L+E+
Sbjct: 146 VRSMEEGRKALEIIGLPLVIRPAYTLGGTGGGIVESVEEFEKALLRSLKLSPVSQALLEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +               +     +                ++ Y+ ++  
Sbjct: 206 SVVGWKEIEFEVMRDRKGNVITVCSMENVDPMGIHTGDSIVVAPTQTLNDIE-YQMLRTA 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     +  +P  R+ + +E+N  P ++  S     +   G+    L  
Sbjct: 265 SLKIITALKIEGGCNIQYALNPNKREYYVIEVN--PRVSRSS--ALASKATGFPIARLTA 320

Query: 291 WM 292
            +
Sbjct: 321 KI 322



 Score = 43.7 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 80/261 (30%), Gaps = 19/261 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++   +P    +   G    +           +  T    +  A   +K     
Sbjct: 614 SEDVTNIMEQEEPLGFLSQFGGQTAINLSKNLEKRGFYLLGTSQKSIDLAEDREKFDRFL 673

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
             +    P    I       +    I  P +++P        +I++   + +     +  
Sbjct: 674 RKNKIPRPKGFYIRNINEAKEVIEEIGFPVLLRPSYVLGGRAMIIVYNMEDLESYFERKD 733

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                  L ++Q++ G E    ++ D          P    +       S +ST V P  
Sbjct: 734 IIL---PLWMDQFIVGKEAEVDLLCDGKEVFI----PGIMEHIERAGIHSGDSTTVFPHY 786

Query: 219 I-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVS 272
               ++  ++   +      +  +G+    ++      +V+ LE N       P ++   
Sbjct: 787 TLSQEVVDKIVDYSTKIALGLEVKGLLNIQYVISSKDEEVYVLEANPRASRTIPYLSKAL 846

Query: 273 IFPEMAAYA-----GYSFREL 288
             P +  YA     GY+ REL
Sbjct: 847 KLP-LVKYATKIALGYTLREL 866


>gi|71279813|ref|YP_270132.1| carbamoyl phosphate synthase large subunit [Colwellia
           psychrerythraea 34H]
 gi|71145553|gb|AAZ26026.1| carbamoyl-phosphate synthase, large subunit [Colwellia
           psychrerythraea 34H]
          Length = 1071

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +P     
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPDMADATYIEPIHWEVVRNIIEKERPCAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +   + +L+   +    +   A   + D+ R  + + + G+    + +
Sbjct: 89  TMGGQTALNCALELEAKGVLKEFNVEMIGATADAIDKAEDRSRFDKAMKAIGLDTPNAEI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+          ++  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 VHTIEEAHAASKVLGFPCIIRPSFTMGGTGGGIAYNIEEFDEICTRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIICAIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGICPETGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 93/294 (31%), Gaps = 36/294 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 587 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESITFEDVLEIVRIEKPKGVIVQYGGQTP 646

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   ++      M     
Sbjct: 647 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQAVDRLGLLQPENATVTSLEEAMAKAEG 706

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++     +   + ++ S ++   +L++ ++D       V  
Sbjct: 707 IGFPLVVRPSYVLGGRAMEIVYDLDDLRRYMTEAVSVSNDSPVLLDHFLDD---AIEVDI 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D   D T++ +     +  +    S +S   LPA     +I   +++        +G  G
Sbjct: 764 DVVCDGTDVVIGGIMQHIEQAGVHSGDSACSLPAYSLSQEIQDVMRKQVTDLAFELGVIG 823

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM---AAY-AGYSFRE 287
           +  +         +V+ +E+N       P ++  +  P     A   AG S +E
Sbjct: 824 LMNTQMAV--KDNEVYIIEVNPRAARTIPFVSKATSVPLAKVGARVMAGKSLKE 875


>gi|327474346|gb|EGF19752.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK408]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSKKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|327462491|gb|EGF08815.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK1]
          Length = 1059

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDIIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|320333552|ref|YP_004170263.1| carbamoyl-phosphate synthase large subunit [Deinococcus
           maricopensis DSM 21211]
 gi|319754841|gb|ADV66598.1| carbamoyl-phosphate synthase, large subunit [Deinococcus
           maricopensis DSM 21211]
          Length = 1028

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 87/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              V  V+A  KPD    
Sbjct: 29  SGTQALKALRREGYRVVLVNSNPATIMTDPDLADATYLEPLTPEFVERVIALEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G         +     L +      G    A+   + R     +   +         
Sbjct: 89  TLGGQTALNLAMDLHERGTLEQYNVELIGAGVEAIKKGEDRELFQAAMKKIGVETARGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++ Q  +  P VI+P       G  +    +            +    +L+E+
Sbjct: 149 VHSMDEAIEYQKELGLPVVIRPSFTLGGTGGGIAHTYEDFLRITEGGLRDSPVTSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +      +         ++  +   + 
Sbjct: 209 SILGWKEYELEVMRDTADTVIIITSIENFDPMGVHTGDSITVAPAQTLSDVEYQRLRDQS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAIIREIGVATGGSNIQFAVNPQNGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 42.6 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 35/291 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+ AG++   +         D D              V  ++ H +P      L G   
Sbjct: 580 ALQQAGYETIMVNSNPETVSTDYDTADRLYFEPLTFEDVMNIVDHERPVGVIVQLGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +       I  T    + +A       +         P           +     
Sbjct: 640 LKLARRLEDAGAPIIGTSPTTIHTAEDRASFNALCERLGIPQPKGKVAENAEQALQLAEA 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDGI-ELTCGV 181
           +  P + +P        +  ++    +   L +  +   G   ++ +Q+++G  EL    
Sbjct: 700 LGFPLMARPSYVLGGRAMRTVRSMDELRTYLTEVYAAVEGQPSILLDQFLEGALELDVDT 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  ++  + P  +  ++  EV+       + +G R
Sbjct: 760 LCDGEHAVVAGVMEHIEAAG---VHSGDSACILPPVHLSPELLAEVKATTERLARELGVR 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
           G+    +         + LE N +   T     P ++   G     +  L+
Sbjct: 817 GLMNVQWAV--KDGVPYILEANPRASRT----VPFVSKAIGVPLAKYAALI 861


>gi|160933777|ref|ZP_02081165.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
 gi|156867654|gb|EDO61026.1| hypothetical protein CLOLEP_02638 [Clostridium leptum DSM 753]
          Length = 1355

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 96/292 (32%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------G 60
           C  AL+ AG++V  +         D D S  L    L P+    V+H            G
Sbjct: 575 CVWALKKAGYEVVIVNNNPETVSTDFDTSDRLYFEPLTPEDVMGVIHTEKPYGVVVAFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + +  T    +  A   ++                +++     ++ 
Sbjct: 635 QTAIKLAKFLDDQGINVLGTSFDSIDMAEDRERFDELLEKHHVKRAEGFTVMTTEEALEV 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        +I+   D  I   +    +    + +LI++Y+ G EL   
Sbjct: 695 ANRIGYPVLMRPSYVLGGQNMIIAFNDADIKEYMAIILAQEIENPILIDKYLMGTELEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            + D    +     P    +       S +S  V PA    D+  +    +      ++ 
Sbjct: 755 AICDGEDILI----PGIMEHIERTGVHSGDSIAVYPAWNINDVMTDKIIESSRNLAISLN 810

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 811 TKGLVNIQYLI--YHNELYVIEVNPRSSRT----IPYISKVTGVPMVDLATR 856



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                      +V  ++   KPD   + 
Sbjct: 30  GTQACRALREEGLEVVLVNSNPATIMTDNAMADKIYIEPLTLETVKRIIKKEKPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      LE   +    +       + D+   K  + S G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAKEGFLEENGVTLLGANPETIDKAEDRQMFKDTMESIGQPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +I+P       G  +++ ++ +          +   Q+L+E+ 
Sbjct: 150 NTVEGAVDFANEIGYPLIIRPAFTLGGSGGGIVENEEELREITENGLRLSPITQVLVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S           +F      ++  +        +    Y+ ++  A
Sbjct: 210 VSGWKEIEFEVIRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADQEYQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LDIINVLKVEGGCNVQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|30249625|ref|NP_841695.1| xarbamoyl-phosphate synthase [Nitrosomonas europaea ATCC 19718]
 gi|30138988|emb|CAD85572.1| Carbamoyl-phosphate synthase:Methylglyoxal synthase-like domain
           [Nitrosomonas europaea ATCC 19718]
          Length = 1065

 Score = 61.8 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  I+ + +                     V  ++   +PD    
Sbjct: 29  SGVQACRALREEGYRVILINSNPATIMTDPELTDATYIEPITWQAVEKIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D +   +LE   +    +   A   + D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLVRHGVLEKYGVVLIGASREAIDKAEDREKFKQAMTRIGLQSARSAM 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M +Q +I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEAMQAQAMIGYPAIIRPSFTLGGSGGGIAYNREEFIEICERGLEASPTRELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVIGWKEYEMEVIRDKQDNCIIVCAIENVDPMGVHTGDSITVAPAQTLTDKEYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAINPENGNMLVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  + A  KP        G   
Sbjct: 582 ALREDGYETIMVNCNPETVSTDYDVSDRLYFEPLTLEDVLEIAAVEKPAGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++  A   ++ ++         P   +       + +   
Sbjct: 642 LKLARALETNGVPIIGTSPDMIDCAEDRERFQAMLQGLGLKQPSNFTARTAETALAAADK 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++ Y  + IE+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEARDLERYIQEAVKVSNDSPVLLDHYLNNAIEVDVDAI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   + +E++R       A+   G
Sbjct: 762 SDGKAVLIGGIMEHIEQAG---VHSGDSACSLPPFSLSASLQEELRRQTEAMAYALNVNG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        V+ LE+N +   T     P ++   G    ++   
Sbjct: 819 LMNIQFAI--QDDTVYVLEVNPRASRTA----PFVSKATGLQLAKIAAR 861


>gi|197118283|ref|YP_002138710.1| carbamoyl-phosphate synthase large subunit lipoprotein [Geobacter
           bemidjiensis Bem]
 gi|197087643|gb|ACH38914.1| carbamoyl-phosphate synthase, large subunit lipoprotein,
           glutamine-dependent [Geobacter bemidjiensis Bem]
          Length = 1082

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVRIGLDVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  M+    +  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQEAMEVIKFVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    L  +   N++             G   
Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLNIVDVEKPTGVIVQFGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +      +      
Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + V    +   +           ++  + P  I  +I +E++R   +    +  +G
Sbjct: 778 CDGQVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISKEIVEEIRRQTKMMALELNVKG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 835 LMNVQFAV--KGNDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877


>gi|317129273|ref|YP_004095555.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
 gi|315474221|gb|ADU30824.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 1070

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL + G++V  I+        D SV                V+   +PD     
Sbjct: 30  GTQACQALMEEGYEVILINSNPATIMTDESVADRVYIEPLTVDFVSRVIRQEQPDGILAT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + + A   + D+   +      +  VP    +
Sbjct: 90  LGGQTGLNLAVELSESGILDEYGVELLGTNLEAIQKAEDREMFRSLMNELNEPVPPSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M     I  P +++P       G  ++  ++ +   +L     +  +Q LIE+ 
Sbjct: 150 QSLDGAMKFVEEIGYPVIVRPAYTLGGTGGGLVYNEEQLREIVLGGLHQSPVNQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDANNQAIVVCNMENIDPVGIHTGDSIVVAPSQTMTDREYQILRNSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G +G     F  DP S   F +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALGIQGGCNVQFALDPDSENYFIIEVN--PRVSRSS--ALASKATGYPIAKLSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   I+ +                       V  V+    P        G  
Sbjct: 579 KAIQEAGYEAIIINNNPETVSTDFQISDKLYFEPLTVEDVMHVILQENPIGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         +++  T    +  A + DK     +      P   +       +   +
Sbjct: 639 ALNLAADLEARGVKLLGTSLENMDRAENRDKFEQTLMQLEIPQPEGKTATSVNEAVTIAN 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  +Q +   + ++   N    +LI++Y+ G E+    +
Sbjct: 699 GIGYPVLVRPSYVLGGRAMEIVYNEQDLLKYMDRAVKVNEKHPVLIDRYLTGKEIEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
            D    V     P    +       S +S  V P   I   + +++        +     
Sbjct: 759 SDGETVVI----PGVMEHIERAGVHSGDSIAVYPSQNISHQLKQQLIDYTIRLARGFNII 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+      +++ LE+N +   T     P ++   G +   +    +
Sbjct: 815 GLLNIQFVIHR--DEIYVLEVNPRSSRT----VPFLSKITGVNMANIATKAI 860


>gi|257095280|ref|YP_003168921.1| carbamoyl-phosphate synthase large subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
 gi|257047804|gb|ACV36992.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Accumulibacter phosphatis clade IIA str. UW-1]
          Length = 1068

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +              DV        + V  ++A  +PD    
Sbjct: 29  SGAQACKALLEEGYRVILVNSNPATIMTDPEMADVTYIEPITWKVVEKIIARERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G        D     +LE   +    +   A   + D+ + K  ++  G+      +
Sbjct: 89  TMGGQTALNCALDLARHGVLEKFGVEMIGATRQAIDKAEDREKFKTAMTGIGLASARSAA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q +I  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQAMIGYPAIIRPSFTMGGSGGGIAYNQEEFVDICKRGLEASPTRELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEFEMEVVRDRNDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VAVLREIGVDTGGSNVQFAICPSDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 94/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++A  KP       
Sbjct: 577 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPVGVIVQY 636

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    + +A   ++ +          P   +       +
Sbjct: 637 GGQTPLKLARDLEANGVPIIGTSPDRIDAAEDRERFQKLLQQLGLRQPANRTARTEPEAL 696

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++   + +   + ++   ++   +L++++  D IE+
Sbjct: 697 RLAAEIGYPLVVRPSYVLGGRAMEIVHDPRDLERYMREAVKVSNDSPVLLDRFLNDAIEV 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +  ++  E++R   L  + 
Sbjct: 757 DVDALSDGEEVLIGGVMEHIEQAG---VHSGDSACSLPPYSLSAELQDELRRQTRLMARG 813

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F     S  VF LE+N +   T     P ++   G    ++   
Sbjct: 814 LKVCGLMNVQFAI--QSGVVFVLEVNPRASRT----VPFVSKATGLQLAKIAAR 861


>gi|325925176|ref|ZP_08186589.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans
           91-118]
 gi|325544430|gb|EGD15800.1| carbamoyl-phosphate synthase large subunit [Xanthomonas perforans
           91-118]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|294666705|ref|ZP_06731941.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
 gi|292603530|gb|EFF46945.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 10535]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|294624590|ref|ZP_06703265.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
 gi|292601125|gb|EFF45187.1| carbamoyl-phosphate synthase large subunit [Xanthomonas fuscans
           subsp. aurantifolii str. ICPB 11122]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|167627029|ref|YP_001677529.1| carbamoyl phosphate synthase large subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597030|gb|ABZ87028.1| carbamoyl-phosphate synthase large chain [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 1094

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G+ V  +         D               SVG ++A  +PD    
Sbjct: 29  SGTQACKVLKEDGYTVYLVNSNPATIMTDPTTADKIFIEPITVESVGKIIARERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              ILE   +    +   +   + ++ R  + ++  G+ V  +++
Sbjct: 89  TVGGQTALNCALALDKAGILEKYNVEMLGAKADSIDKAENRERFNKAMAKIGLEVPRNVV 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P +I+P       G  +    +     +    S +  +++LI++
Sbjct: 149 VQTMEQAYKALEDIGLPAIIRPSFTLGGSGGGIAYTKEEFESIVKNGLSLSPTNEVLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D + I     +     +      +          +        
Sbjct: 209 SILGWKEYEMEVIRDKADNSIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + K+  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPETGKLVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 37/326 (11%), Positives = 96/326 (29%), Gaps = 48/326 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A +L++ G +   I         D D S 
Sbjct: 573 VIILGGGPN-------RIGQGIEFDYACVHAAKSLKEEGIETIMINCNPETVSTDYDTSD 625

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   +++                 G      +       + I  T    + 
Sbjct: 626 KLYFEPLMAENVLDIIKNEMRKGEVLGVIVQFGGQTPLKLVSALHENNIPILGTDPDKID 685

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P+                +  P V++P        + ++  
Sbjct: 686 LAEDRERFKELLDKVGLKQPLNTIAYTINELKKKIVNVGYPVVVRPSNVLGGRAMEIVHS 745

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  ++       +LI+++++       V   A            +       +
Sbjct: 746 KEELDAYIKTNAKCILEGPILIDKFLEN-ATELDVDALADGGDRVFVAGIMEHIEEAGIH 804

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +  +  +EV++      + +   G+    F +   + ++  +E+N + 
Sbjct: 805 SGDSACSIPTRSLSDEQIEEVKQATIKLARELNVIGLMNVQFAY--QNGELCVIEVNPRA 862

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P +A   G S   +   +
Sbjct: 863 SRT----VPFVAKATGNSIANIATKL 884


>gi|157150233|ref|YP_001450393.1| carbamoyl phosphate synthase large subunit [Streptococcus gordonii
           str. Challis substr. CH1]
 gi|189081836|sp|A8AX83|CARB_STRGC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|157075027|gb|ABV09710.1| carbamoyl-phosphate synthase, large subunit [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 1059

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEGELQEIAENGLKISPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAIEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPVLVDSYIVGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|21108068|gb|AAM36724.1| carbamoyl-phosphate synthase large chain [Xanthomonas axonopodis
           pv. citri str. 306]
          Length = 1090

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 98

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 158

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 279 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334

Query: 291 WM 292
            +
Sbjct: 335 KL 336



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883


>gi|78047465|ref|YP_363640.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
 gi|78035895|emb|CAJ23586.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. vesicatoria str. 85-10]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.9 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   ++ +                       V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYGTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|161485715|ref|NP_642188.2| carbamoyl phosphate synthase large subunit [Xanthomonas axonopodis
           pv. citri str. 306]
 gi|22095491|sp|P58942|CARB_XANAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|21231291|ref|NP_637208.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66768657|ref|YP_243419.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|188991525|ref|YP_001903535.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. campestris str. B100]
 gi|22095492|sp|P58943|CARB_XANCP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21112944|gb|AAM41132.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris str. ATCC 33913]
 gi|66573989|gb|AAY49399.1| carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris str. 8004]
 gi|167733285|emb|CAP51484.1| Carbamoyl-phosphate synthase large chain [Xanthomonas campestris
           pv. campestris]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPRAEV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALDIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 88/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   +P        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNADEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +  +   E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAETQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     D     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNDAGDDIVYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873


>gi|325510054|gb|ADZ21690.1| carbamoyl phosphate synthase large subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 1065

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   ++ +                      +V  ++   +PD    
Sbjct: 29  SGTQACKAVKEEGIETVLVNSNPATIMTDSHIADKVYIEPLTEEAVEKIIEKERPDGILA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  +            + +   +S  +  A   ++ ++        VP    
Sbjct: 89  GFGGQTALNLAMNLNDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D  +    P +I+P       G  +    + +     +    +   Q+L+EQ
Sbjct: 149 ATHIDECIDFVNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +       ++  +        +    Y  ++  
Sbjct: 209 SVAGWKELEYEVMRDAKDNCIIVCNMENLDP-VGVHTGDSIVTAPSQTLTDKEYHMLRHS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G     F  +P S     +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 104/290 (35%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG+K   I         D D             +V  ++   KP+       G   
Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   +K        +       ++       ++   
Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+    ++   + ++ + +    +LI++Y+ G E+    + 
Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +P ++  ++ +      +A+  +G+
Sbjct: 762 DGENILIPGIMEHIERTG---VHSGDSITMYPYHTLPKEVVDKLVKYTKSLAKALEVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++D  +  V+ +E+N +   T     P ++   G    +L + ++
Sbjct: 819 MNIQYVYDGEN--VYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862


>gi|15895902|ref|NP_349251.1| carbamoyl phosphate synthase large subunit [Clostridium
           acetobutylicum ATCC 824]
 gi|22095520|sp|Q97FT3|CARB_CLOAB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15025672|gb|AAK80591.1|AE007762_1 Carbamoylphosphate synthase large subunit [Clostridium
           acetobutylicum ATCC 824]
          Length = 1065

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   ++ +                      +V  ++   +PD    
Sbjct: 29  SGTQACKAVKEEGIETVLVNSNPATIMTDSHIADKVYIEPLTEEAVEKIIEKERPDGILA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  +            + +   +S  +  A   ++ ++        VP    
Sbjct: 89  GFGGQTALNLAMNLNDAGVLDKYNVRLLGINSEAIKKAEDREEFKNLMEEIDEPVPKSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D  +    P +I+P       G  +    + +     +    +   Q+L+EQ
Sbjct: 149 ATHIDECIDFVNKFGLPVIIRPAFTLGGTGGGIASTMEELKEICDRGIKMSPIGQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +       ++  +        +    Y  ++  
Sbjct: 209 SVAGWKELEYEVMRDAKDNCIIVCNMENLDP-VGVHTGDSIVTAPSQTLTDKEYHMLRHS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G     F  +P S     +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRNLKIEGGCNIQFALNPKSNDYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 104/290 (35%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG+K   I         D D             +V  ++   KP+       G   
Sbjct: 582 AIKEAGYKSIIINNNPETVSTDFDTADKLYFESLYIDNVMNIIEKEKPEGVIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A   +K        +       ++       ++   
Sbjct: 642 INLADKLYKNGVKILGTSFESIDLAEDREKFSELLKELNIPQAKGMAVTSMEEAYEAVKE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+    ++   + ++ + +    +LI++Y+ G E+    + 
Sbjct: 702 IGYPVIVRPSYVIGGRAMQVVYDKLALQKYMTEAVTLSTEHPVLIDKYIKGTEIEVDTIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +P ++  ++ +      +A+  +G+
Sbjct: 762 DGENILIPGIMEHIERTG---VHSGDSITMYPYHTLPKEVVDKLVKYTKSLAKALEVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +++D  +  V+ +E+N +   T     P ++   G    +L + ++
Sbjct: 819 MNIQYVYDGEN--VYVIEVNPRASRT----VPILSKVTGVPMVKLAVEIL 862


>gi|256752200|ref|ZP_05493065.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus CCSD1]
 gi|256748928|gb|EEU61967.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           ethanolicus CCSD1]
          Length = 1072

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 94/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  +P+    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKERPEGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY 
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPKSHKYYVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/263 (15%), Positives = 85/263 (32%), Gaps = 14/263 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +    KP     +  G    +     +   ++I  T    + 
Sbjct: 606 DRLYFEPITL---EDVLNIYEKEKPLGVMVMFGGQTAINLTEGLVKNRVKILGTSYESID 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +   +K        +   P     L      D    +  P +I+P        +  +  
Sbjct: 663 ISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALKLGFPLLIRPSYVIGGQSMEKVNT 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q I   +  ++  + G  +LI++Y+DG E+    + D    +     P    +      
Sbjct: 723 LQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVSDGECVLI----PGIMEHIERAGV 778

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  + PA+   +     +        +A+  +G+    F        V+ LE+N +
Sbjct: 779 HSGDSFSIYPARNLSEREINTIIEYTERISKALNVKGLINIQFAV--KEGTVYVLEVNPR 836

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P M+   G    +L
Sbjct: 837 ASRT----VPIMSKATGVPMVKL 855


>gi|167036658|ref|YP_001664236.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|320115085|ref|YP_004185244.1| carbamoyl-phosphate synthase large subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
 gi|226700941|sp|B0KBW4|CARB_THEP3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|166855492|gb|ABY93900.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|319928176|gb|ADV78861.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacter
           brockii subsp. finnii Ako-1]
          Length = 1072

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 94/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ + +                     V  ++A  +P+    
Sbjct: 29  SGTQACKSLKEEGVQVVLVNNNPATIMTDTDIADIVYIENPTVSVVEKIIAKERPEGILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +       + IL+   +    +   +   + D+   + K       V    +
Sbjct: 89  TLGGQTGLNLAVKLKEEGILDKYNVKLLGTSFESIKTAEDRELFKRKMQEIGEPVAESVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +I+P       G  +   D+ +   +      +   ++L+E+
Sbjct: 149 VTNIEDALKFAKNYGYPLIIRPAYTLGGTGGGIAHNDEELISIVDLGLKKSMVGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGWKEIEFEVMRDAADNCITICSMENFDPVGVHTGDSIVVAPTQTLSDYE-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +A+   G     F  DP S K + +E+N  P ++  S     +   GY 
Sbjct: 268 SIKIIKALKIEGGCNIQFALDPKSHKYYVIEVN--PRVSRSS--ALASKATGYP 317



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/286 (16%), Positives = 90/286 (31%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG K   I         D D              V  +    KP     +  G   
Sbjct: 580 ALREAGIKSIIINNNPETVSTDFDTGDRLYFEPITLEDVLNIYEKEKPLGVMVMFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +     +   ++I  T    +  +   +K        +   P     L      D    
Sbjct: 640 INLTEGLVKNRVKILGTSYESIDISEDREKFSKLLRELNINQPKGDYALTVEDAKDIALK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +I+P        +  +   Q I   +  ++  + G  +LI++Y+DG E+    + 
Sbjct: 700 LGFPLLIRPSYVIGGQSMEKVNTLQEIIDYVSNATQVSPGRPILIDKYIDGREVEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + PA+   +     +        +A+  +G
Sbjct: 760 DGECVLI----PGIMEHIERAGVHSGDSFSIYPARNLSEREINTIIEYTERISKALNVKG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        V+ LE+N +   T     P M+   G    +L
Sbjct: 816 LINIQFAV--KEGTVYVLEVNPRASRT----VPIMSKATGVPMVKL 855


>gi|326789392|ref|YP_004307213.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
 gi|326540156|gb|ADZ82015.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           lentocellum DSM 5427]
          Length = 1068

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 99/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G ++  +              D+          +  ++A  +PD    
Sbjct: 25  SGTQACKALRKLGHQIILVNSNPATIMTDPGIADITYIEPLNAERLEEIIAKERPDWLLP 84

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +      L+   +      + A     D++  K+ + S G+ +  S  
Sbjct: 85  NLGGQSGLNLCSELNQLGILKKYNVEVIGVQVDAIERGEDRVEFKKTMDSLGIEMARSEV 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 145 AYTVEEALAIAEQLGYPVVLRPAYTMGGAGGGLVYNTDELKTVCARGLQASLVGQVLVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   +           +       ++  +        I  D+ KE+QR 
Sbjct: 205 SILGWEELELEVVRDAKGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEDVQKELQRQ 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+   +AI   G +   F     + ++  +EIN +   T  S     +   G+    L+ 
Sbjct: 264 AYKIVEAIEVIGGTNVQFARHTETGRIIVIEINPR---TSRSS-ALASKATGFPIA-LVS 318

Query: 291 WMV 293
            M+
Sbjct: 319 AML 321



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 91/294 (30%), Gaps = 31/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
            A+AL++ GF+   +         D D              V  +    KP        G
Sbjct: 574 AATALKELGFETIMVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIHEKEKPLGVIAQFGG 633

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         + I  T    +  A   D  R+        +P     +     +  
Sbjct: 634 QTPLNLAADLKKAGVNILGTSPETIDFAEDRDLFRAMMEKLEIPMPESGMAVNVEEALAI 693

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P       G+ V+   +S+ + +  +        +LI++++        
Sbjct: 694 AKRIGYPVMVRPSYVLGGRGMEVVHDAESLEVYMKAAVGVTPDRPILIDRFL---HNAME 750

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
              DA  D   + VP    +       S +S  +LP+    +     ++       + +G
Sbjct: 751 CEADAISDGENVFVPAVMEHIELAGIHSGDSACILPSLNISEENVAIIKDYTKRIAKEMG 810

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            RG+    +       KV+ LE N +   T     P ++         L   ++
Sbjct: 811 VRGLMNMQYAI--EDNKVYVLEANPRASRT----VPLVSKVCNVQMVRLATEII 858


>gi|255020831|ref|ZP_05292887.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus
           ATCC 51756]
 gi|254969622|gb|EET27128.1| Carbamoyl-phosphate synthase large chain [Acidithiobacillus caldus
           ATCC 51756]
          Length = 1076

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D            ++V  ++   +PD    
Sbjct: 29  SGVQACKALREEGCRVILVNSNPATIMTDPDTADAVYIEPVEWQTVAKIIERERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G        D   + ILE   +    + I A   + D+   +         V     
Sbjct: 89  TMGGQTALNCALDLHREGILERFGVELIGASIEAIQEAEDRGRFKRAMEEIGLEVARSAF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    +       +    +   ++LIE+
Sbjct: 149 AHTLDEARAIAEDVGFPVIIRPSYTLGGSGGGIAYNREEFEDIAARGLEASPSHEILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVVRDRADNCIIVCSIENLDPMGIHTGDSITVAPAQTLTDREYQVMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLRRIGVDTGGSNVQFALNPRNGRMLVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/321 (13%), Positives = 95/321 (29%), Gaps = 45/321 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + +L GG +         G+           A AL   GF+   +         D D   
Sbjct: 560 IVILGGGPN-------RIGQGIEFDYCCVHAAMALRTDGFETIMVNCNPETVSTDYDTSD 612

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++A  KP+       G              + I  T    +  A  
Sbjct: 613 RLYFEPLTLEDVLEIVALEKPEGVIVQFGGQTPLKLANDLESAGVPIIGTSPDSIDLAED 672

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P           +     +  P V++P        + ++  ++ +
Sbjct: 673 RERFQQLITRLGLRQPENAIARSADEALQLARQLGYPLVVRPSYVLGGRAMRIVYSEEDL 732

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              ++++   +    +L++++++               V    + +    +      S  
Sbjct: 733 ARYMVEAVRVSEDQPILLDRFLNDALEVDVDAVADGKQVVVAGIMEHIEQAGVHSGDSAC 792

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                P  +   I  E++R A    QA+G  G+    F       +++ LE+N +   T 
Sbjct: 793 CLP--PYSLAQPIQDELRRQAECLGQALGVIGLMNCQFAV--QEDRIYVLEVNPRASRT- 847

Query: 271 VSIFPEMAAYAGYSFRELLLW 291
               P ++   G    ++   
Sbjct: 848 ---VPFVSKACGVPLAKIAAR 865


>gi|138894347|ref|YP_001124800.1| carbamoyl phosphate synthase large subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|134265860|gb|ABO66055.1| Carbamoylphosphate synthetase heavy subunit [Geobacillus
           thermodenitrificans NG80-2]
          Length = 1042

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 41/311 (13%)

Query: 18  SGKACASALEDAGFKVSQI----------DVDRS-----------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +          DV              +  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 VTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMKQFIALVEKGLAESPIRQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGVHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279
           A     A+G  G     F  DP S++ + +E+N  P ++  S        +P     A  
Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSSALASKATGYPIARIAAKL 325

Query: 280 YAGYSFRELLL 290
             GY+  EL+ 
Sbjct: 326 AVGYTLAELIN 336



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 578 SVHSVF-ALQKEGYETIMINNNPETVSTDFAIADRLYFEPLTLESVLDVIEAEQIQHVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      I+      D+                       
Sbjct: 637 QFGGQTAINLVKGLEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +++P       G+ +I+ +  +   + Q         +LI+ Y+DG E
Sbjct: 697 LVAKAAEIGYPVLLRPSYVIGGRGMFIIRSEAQLAALIEQGELTY---PILIDAYLDGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAH 235
               ++ D +  +    +P    +  +    S +S   LPA+   +  +  +   A    
Sbjct: 754 AEADIVTDGTDIL----LPTIIEHVEKAGVHSGDSYAWLPAQTLTEEERANIVDYARRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|119478512|ref|ZP_01618474.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119448493|gb|EAW29741.1| carbamoyl-phosphate synthase large subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 1075

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                      +V  ++   KPD    
Sbjct: 29  SGAQACKALREEGIRVILVNSNPATIMTDPAMADATYIEPVEWQTVARIIEVEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D     +LE   +    +   A   + D+    + +   G+    S  
Sbjct: 89  TMGGQTALNCALDLDRHGVLEKHGVEMIGASKEAIDKAEDRDLFDKAMKRIGLECPRSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     Q  +  P +I+P       G  +    +       +    +   +LLI++
Sbjct: 149 AHSMEEAFQVQSQLGFPCIIRPSFTMGGSGGGIAYNKEEFAEICERGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDKNDNCIIVCSIENFDPMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +   +E+N  P ++  S     +   G+    +  
Sbjct: 269 LAVLREIGVETGGSNVQFGQCPDTGRFVIIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/294 (10%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHKEKPKGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T    +  A   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARELEAAGVPIIGTTPDAIDRAEDRERFQHMIQKLGLKQPPNTTVRSTDEAI 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
            +   I  P V++P        + ++  +  +   + ++   ++   +L++ +++  +E+
Sbjct: 702 AAAASIGYPLVVRPSYVLGGRAMEIVYDEDELLRYMKEAVQASNESPVLLDHFLNAAVEM 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +      +++    +    
Sbjct: 762 DVDAVSDGKDVVIGAIMQHIEQAGIHSG---DSACSLPPYSLSAAQQDKMREQVKIMAIE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+            ++F +E+N +   T     P ++   G S  ++   
Sbjct: 819 LGVCGLMNVQ--LAEQDGEIFIIEVNPRASRT----VPFVSKCIGVSLAKIAAR 866


>gi|50120847|ref|YP_050014.1| putative allophanate hydrolase [Pectobacterium atrosepticum
           SCRI1043]
 gi|49611373|emb|CAG74820.1| putative allophanate hydrolase [Pectobacterium atrosepticum
           SCRI1043]
          Length = 1200

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 16/186 (8%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++K   GG  +G+ V      +             +      +++     
Sbjct: 145 CAAAEIGYPVMLKSTAGGGGIGMRVCYSATELSEAFETVKRLGQNNFSDAGVFIEKYIER 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +        +  V         ++  +       PA    D +   +   A    QA
Sbjct: 205 ARHLEVQIFGDGQGEVLALGVRDCSVQRRNQKVIEETPAPNLPDGVADALCSAAISLAQA 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+
Sbjct: 265 VNYRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMI 313

Query: 294 EDASCL 299
           E A+  
Sbjct: 314 ELAAGD 319


>gi|308193610|gb|ADO16336.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 225

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 9/205 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 23  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 82

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 83  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 140

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS-------THVLPAKIPLDIY 224
           V G E+ C V+G+++  V          Y     +  +            +PA +  +  
Sbjct: 141 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAFITVPADLSAEER 200

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFL 249
             +Q  A   ++A+GCRG++R D  
Sbjct: 201 GRIQETAKKIYKALGCRGLARVDMF 225


>gi|150400899|ref|YP_001324665.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus
           Nankai-3]
 gi|150013602|gb|ABR56053.1| carbamoyl-phosphate synthase, large subunit [Methanococcus aeolicus
           Nankai-3]
          Length = 1061

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ +                       V  ++   +PD    
Sbjct: 29  SGSQACKALKELGYEIVLVNSNPATIMTDPEMADEIYIEPLVPEVVEKIIEKEQPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  V    + IL+   +    + + A   + D+   K+     GV V  S  
Sbjct: 89  TLGGQTALNLAVELADKGILDKYGVELIGAKLDAIRKAEDRELFKEACKKVGVDVLKSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     +  P V++P       G  V    + +     +   ++  +Q+LIE+
Sbjct: 149 AYTVEESLSIAEKLGYPVVVRPAFTLGGTGGGVAFNPEELKSIASKGLEYSLKNQILIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SIIGWKEYEYEVIRDLNDNVIIVCTIENIDPMGIHTGDSITVAPTQTLSDEEYQLLRDYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IKIIREIGVETGGSNIQFAVNPENGRIVAIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 96/290 (33%), Gaps = 29/290 (10%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--------NFGED 65
             +L++ GF+   +         D D +  L    L P+   N++            G  
Sbjct: 583 IKSLKEEGFETIMVNCNPETVSTDFDLADKLYFEPLYPEDVLNIIEKENPYGVVIQVGGQ 642

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +     + +     +   +  L  D+ +   +++   +   P+ +V       +    
Sbjct: 643 TPLNLSKYISDNMIVGTPKESIDLVEDREKFSNILNELKILQPPNGIVFDEKTAVEVAEK 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++  ++ +   + ++   +    +LI+++  D IE+    +
Sbjct: 703 IGYPVLVRPSYVIGGRAMHIVYNNEELKKYMKEAVMVSPELPILIDKFLEDAIEVDVDAI 762

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +        S+        +   L+I K+  +   L  +  G   
Sbjct: 763 CDGEDVFIGGIMEHIEEAGIHSGDSACVIPTQTLSNETLNIIKDYTKKLSLKLKIKGL-- 820

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +  +      V+ LE N +   T     P ++   G S  ++   +
Sbjct: 821 ---INIQYAIKDNTVYVLEANPRASRT----IPYLSKAIGISLAKIAAKI 863


>gi|260437973|ref|ZP_05791789.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus
           DSM 2876]
 gi|292809599|gb|EFF68804.1| carbamoyl-phosphate synthase, large subunit [Butyrivibrio crossotus
           DSM 2876]
          Length = 1065

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                     +S+  ++   KPD     
Sbjct: 30  GTQACRSLKEEGMEVVLVNSNPATIMTDKNIADEVYIEPLTVKSLEQIILKEKPDSILPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G  G +    +     L E      G  A  +   + R +   +   +    +    +
Sbjct: 90  LGGQAGLNLAMEIAETGFLEEHNVKLIGTTAETIRKAEDRLEFKTTMEKIGEPCAPSLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  + K ++ +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGIAFANQIGYPVVLRPAYTLGGSGGGIAKNEEELIDILSNGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIDELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  G++   I         D D              V  ++    PD A     G   
Sbjct: 581 AFKAEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVESIVELEHPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +        +        ++      +++ + 
Sbjct: 641 IKLTKALMEMGVPILGTSAEDVDAAEDRELFDEILEQTGIPRAAGKTVFTTEEALEAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAISDKDIVEFMEIINRQVQEHPILVDKYLMGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P   I   I   ++       +A+  +G
Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSISQKIVDMLEDYTIKLARALHVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 817 LINIQFIV--YNDQVYVIEVNPRSSRT----VPYISKVTGIPIVKLATQVI 861


>gi|313680221|ref|YP_004057960.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus
           DSM 14977]
 gi|313152936|gb|ADR36787.1| carbamoyl-phosphate synthase large subunit [Oceanithermus profundus
           DSM 14977]
          Length = 1024

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQAVKALRREGYRVVLVNSNPATIMTDPRLADATYIEPLRLDFLEKIIARERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++      LE   +    +   A     D+ + +  +   G+ V    +
Sbjct: 89  TLGGQTALNLAMELYEAGVLERYGVELIGANYAAIKKGEDREQFQAAMKKIGLDVPRGRM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +     +  P +++P       G  V   + ++   L +    +     L+E+
Sbjct: 149 VSSLEDGLAFAREVGYPVIVRPSFTLGGTGGGVAADEAALRELLGRGLRLSPAHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  K     
Sbjct: 209 SIVGWKEYELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLTDVEYQKMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 KDIIREIGVDTGGSNIQFAVDPKTGRLVVIEMN--PRVSRSS--ALASKATGYPIAKI 322



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 88/297 (29%), Gaps = 31/297 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S      AL++AG+    +         D D              V  +L   +PD    
Sbjct: 579 SAVHAVWALQEAGYTTLMVNSNPETVSTDYDTADKLYFEPLTAEDVLEILERERPDGVIV 638

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            L G                I  T    + +A   +             P          
Sbjct: 639 QLGGQTPLKLARALEEAGQPIWGTSPASIHAAEDREAFNRLAAELGIPQPAGAVAADEPE 698

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    +  P +++P        + V+K +  +   L Q  +       ++        
Sbjct: 699 ALEHARRLGYPLMVRPSYVLGGRAMQVVKNEDELKAYLSQVYAELAARPTILLDAYLDGA 758

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V   A  +   +A            +S  ++T + P  +P +  + V+       +
Sbjct: 759 IEIDVDALADGERVVVAGVMEH-VERAGVHSGDSATVLPPVTLPAEAVETVRDYTRKLAR 817

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELLL 290
           A+  +G+    + +     +V+ LE N +   T     P ++   G+    +  L+ 
Sbjct: 818 ALEVKGLLNVQYAY--KDGQVYVLEANPRASRT----VPFVSKAVGHPLAKYAALIS 868


>gi|225387905|ref|ZP_03757669.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme
           DSM 15981]
 gi|225045990|gb|EEG56236.1| hypothetical protein CLOSTASPAR_01675 [Clostridium asparagiforme
           DSM 15981]
          Length = 839

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 37/290 (12%), Positives = 89/290 (30%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   I         D D              V  ++   KPD A     G   
Sbjct: 353 AFSKEGYETVIINNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 412

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   ++  +         P   ++        + + 
Sbjct: 413 IKLTEALMKMGVPILGTAAEDVDAAEDRERFDAILEQCDIPRPAGHTVFTAEEAKKAAND 472

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 473 LGYPVLVRPSYVLGGQGMQIAICDEDIDEFIGIINQIAQEHPILVDKYIMGKEIEVDAIC 532

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +    +   +           + +      I       +        +A+  +G+
Sbjct: 533 DGTDILIPGIMQHIERTGIHSG---DSISVYPAQDITQKNVDTLVEYTEKLARALHVKGM 589

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ D     V+ +E+N +   T     P ++   G     L   ++
Sbjct: 590 INIQFIVDGDD--VYIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 633


>gi|196248043|ref|ZP_03146745.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
 gi|196212827|gb|EDY07584.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           G11MC16]
          Length = 1042

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 55/311 (17%), Positives = 102/311 (32%), Gaps = 41/311 (13%)

Query: 18  SGKACASALEDAGFKVSQI----------DVDRS-----------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +          DV              +  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVDAIEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLYEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 VTNVKEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFIALVEKGLAESPIRQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGVHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA- 279
           A     A+G  G     F  DP S++ + +E+N  P ++  S        +P     A  
Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSSALASKATGYPIARIAAKL 325

Query: 280 YAGYSFRELLL 290
             GY+  EL+ 
Sbjct: 326 AVGYTLAELIN 336



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 578 SVHSVF-ALQKEGYETIMINNNPETVSTDFAIADRLYFEPLTLESVLDVIEAEQIQHVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      I+      D+                       
Sbjct: 637 QFGGQTAINLVKGLEEAGVRLLGVTYDIIDQLEDRDRFYQLLEELDIPHVPGLMANDAEE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +++P       G+ +I+ +  +   + Q         +LI+ Y+DG E
Sbjct: 697 LVAKAAEIGYPVLLRPSYVIGGRGMFIIRSEAQLAALIEQGELTY---PILIDAYLDGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAH 235
               ++ D +  +    +P    +  +    S +S   LPA+   +  +  +   A    
Sbjct: 754 AEADIVTDGTDIL----LPTIIEHVEKAGVHSGDSYAWLPAQTLTEEERANIVDYARRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|194365589|ref|YP_002028199.1| carbamoyl phosphate synthase large subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194348393|gb|ACF51516.1| carbamoyl-phosphate synthase, large subunit [Stenotrophomonas
           maltophilia R551-3]
          Length = 1080

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ +                      +V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPEMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADNGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLECPTAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T+D    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLDEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELVDIVSRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGINPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 88/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       ++  +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDNLGLKQPPNRIARNDQEALLLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A      +     +       +S  +S  + P  +      E++R      +A+   G+
Sbjct: 767 IADAQGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSAATQAELRRQVVELAKALNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     D     ++ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAIQTSDEGDDTIYLLEVNPRASRT----VPFVSKATGMPLAKIAAR 873


>gi|237751022|ref|ZP_04581502.1| carbamoyl-phosphate synthase subunit large [Helicobacter bilis ATCC
           43879]
 gi|229373467|gb|EEO23858.1| carbamoyl-phosphate synthase subunit large [Helicobacter bilis ATCC
           43879]
          Length = 1215

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L+  G++V  I         D D +            +  ++     D    
Sbjct: 40  SGTQAVKTLKSLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIADIIKRESVDAILP 99

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE +E        +         +   +     +P      
Sbjct: 100 TMGGQTALNVAMSMYEKGMLEGIEFLGAKPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 159

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V                 +  +++LIE+ +
Sbjct: 160 TEEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKAVAKNGLETSPINEILIEESL 219

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 220 LGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 279

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 280 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 335



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID +R V  V+   KPD    ++H        +   L  +      +       + D
Sbjct: 719 FEPIDFER-VRAVIEREKPDGI--IVHFGGQTPLKLANSLTKINAKIIGTSAKVIDTAED 775

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V++ G+    + +           + I  P +++P        + ++  D  +
Sbjct: 776 REKFASFVNNLGLKQPQNGIAYEKEQAYSVANKIGFPVLVRPSYVLGGRAMRIVYDDDEL 835

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + +  + +    +LI+++++       +  D   D   + +     +  E    S +
Sbjct: 836 KQYMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGESVYIGGIMEHIEEAGIHSGD 892

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S   LP     +   +    +       +G  G+    +     + +++ +E+N +   T
Sbjct: 893 SASSLPTINIRESMLKEIEQSTAKIALKLGVVGLMNVQYAI--YNNELYLIEVNPRASRT 950

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 951 ----VPFVSKATGLPLAKIATR 968


>gi|153004934|ref|YP_001379259.1| carbamoyl phosphate synthase large subunit [Anaeromyxobacter sp.
           Fw109-5]
 gi|152028507|gb|ABS26275.1| carbamoyl-phosphate synthase, large subunit [Anaeromyxobacter sp.
           Fw109-5]
          Length = 1083

 Score = 61.4 bits (147), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSV------------GLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D   +               +LA  KPD+   
Sbjct: 29  SGTQACKALKEEGYEIVLLNSNPATIMTDPGFADRTYVEPITPAVAEQILAREKPDVLLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G    +          L    +    + + A   + D+   ++        +P    
Sbjct: 89  TLGGQTALNLAVALAKNGALARHGVELIGAQLEAIEKAEDRLLFKAAMERVGVELPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V    +       ++ + +    +L E+
Sbjct: 149 ATSWEEARAIAEDIGFPIIIRPSFTMGGEGGGVAYNREEFEPLARRALTLSPTHTILCEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SIIGWKEYELEVMRDRNDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIREIGVETGGSNIQFGVHPRTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 36/299 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL  AG++   +         D D S  L    +  +    ++H            G   
Sbjct: 589 ALSRAGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHVEKPEGLIVQYGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++  +         P                 
Sbjct: 649 LKLAVPLHELGVPIFGTTPDAIDRAEDRERFAALIEKLGLRQPQNGVARSADEAFAVARR 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + V+  D+ +   L ++   ++   +L++++  D  E+   V+
Sbjct: 709 IGYPVMVRPSYVLGGRAMEVVYDDKDLDTYLREAVQASNERPVLVDRFLRDAAEVDVDVV 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  + P  +  +   E+++ +    + +G  G
Sbjct: 769 SDGEDVVVGGVMEHIEEAGIHSG---DSACALPPFSLAPERVAEIEQQSIALAKELGVVG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE-----LLLWMVEDA 296
           +    F        V+ LE+N +   T     P +    G    +     ++   +E+A
Sbjct: 826 LMNVQFAI--QGNDVYVLEVNPRASRT----VPFVGKATGLPLAKAGSLCMVGKSLEEA 878


>gi|319939245|ref|ZP_08013608.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV]
 gi|319811641|gb|EFW07917.1| carbamoyl phosphate synthetase [Streptococcus anginosus 1_2_62CV]
          Length = 1059

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 81/267 (30%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   KP        G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIELEKPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D         +   P   +       + +   I  P +++P        + +++ 
Sbjct: 663 RAEDRDLFEQALKDLNIPQPPGQTATNEEEAVAAARKIGFPVLVRPSYVLGGRAMEIVEN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EVDLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGRQVLIPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  + + + + +          + C G+    F+      KV+ +E+N + 
Sbjct: 780 SGDSMAVYPPQTLSVQVQQTIADYTKKLAIGLHCIGMMNIQFVI--KDEKVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        ++   ++
Sbjct: 838 SRT----VPFLSKVTNIPMAQVATQLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++   E +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKEGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGVHTGDSIVFAPTQTISDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|315084349|gb|EFT56325.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Propionibacterium acnes HL027PA2]
          Length = 478

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 87/271 (32%), Gaps = 14/271 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +PD       G    +         + I  T    L 
Sbjct: 16  DKLYFEPLTF---EDVMNVVDLEQPDGVIVQFGGQTAINLAGPLSAAGVPILGTQVADLD 72

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +   S             +   +         +  P +++P        + ++  
Sbjct: 73  RAEDREGFESLLAELGIPQAPGGTARSSEEAFAVAEELGYPVLVRPSYVIGGRAMAIVTS 132

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   +  +   +    +L+++Y++G+E     + D +  +    +   +       +
Sbjct: 133 AEELKRYMRDAVHASPDKPVLVDRYLNGLECEVDAICDGTDVLIPGIMEHIERAG---VH 189

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF--DPLSRK--VFWLEI 262
           S  +     P ++   +   +  +     + +  +GI    F+   DP + +  V+ +E 
Sbjct: 190 SGDSMAVYPPQRMSQHVADRIIEVTTKLARGLKTKGILNIQFVVANDPATGEETVYVIEA 249

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           N +   T     P ++   G S  E+   ++
Sbjct: 250 NPRASRT----VPFLSKVTGVSMAEVATRII 276


>gi|253700925|ref|YP_003022114.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21]
 gi|251775775|gb|ACT18356.1| carbamoyl-phosphate synthase, large subunit [Geobacter sp. M21]
          Length = 1082

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  +         D D +            +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGFEVVLLNSNPATIMTDPDFADFTYIEPVTPEILAAIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V       LE   +    + + A   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNTAVAVAENGTLEKFGVELIGAKLPAIKKAEDRTLFKEAMVKIGLDVPRSGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  M+   ++  P +I+P       G  +    +      +     +  D++L+E+
Sbjct: 149 AHNYQEAMEVIKVVGFPAIIRPSFTLGGTGGGIAYNMEEYERMSMAGIEASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYELEVMRDTADNVVIICSIENFDAMGVHTGDSITVAPAQTLTDKEYQILRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LKIIREIGVDTGGSNIQFGTNPKNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 598 ALSEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLHIVDVEKPTGVIVQFGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ +          P   +      +      
Sbjct: 658 LKLAVALEKAGVPIIGTSPDAIDRAEDRERFQEMLQKLKLRQPENGTARSFEESEVVAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI++++ + IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYDVDNLRRYMHTAVQASPEHPILIDKFLDEAIEIDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + V    +   +           ++  + P  I  +I +E++R   +    +  +G
Sbjct: 778 CDGQVAVIGGIMEHIEEAGIHSG---DSACSLPPYSISKEIVEEIRRQTKMMALELNVKG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F        ++ +E+N +   T     P ++   G    ++   
Sbjct: 835 LMNVQFAV--KGNDIYIIEVNPRASRTS----PFVSKATGRPLAKIAAR 877


>gi|170079083|ref|YP_001735721.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. PCC
           7002]
 gi|169886752|gb|ACB00466.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. PCC
           7002]
          Length = 1090

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 97/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQSCKALREEGYEVVLVNSNPATIMTDPETADRTYVEPITPEIVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    + + A  ++ D+   K+ ++  GVPVCPS +
Sbjct: 89  TMGGQTALNTAVSLAKNGTLEKFNVELIGAKLEAIEMAEDRNLFKEAMARIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +  I     P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ASTMEEAREVAIEIGSYPLIIRPAFTMGGSGGGIAYNQEEYEKICKSGLEASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEYELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +PL+ +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SLKIIREIGVETGGSNIQFSVNPLNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 43.3 bits (100), Expect = 0.048,   Method: Composition-based stats.
 Identities = 29/298 (9%), Positives = 81/298 (27%), Gaps = 38/298 (12%)

Query: 22  CASA--LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58
           C +A  L DAG++   ++                         V  ++    P       
Sbjct: 590 CHAAFSLSDAGYETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIEAENPAGVIIQF 649

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI------- 111
            G       V     L          +          ++       +     I       
Sbjct: 650 GGQTPLKLAVPLDNYLNAGDCPVDTKIWGTQPDAIDTAEDRERFEKILHDLEILQPANGI 709

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +      + +  P V++P        + ++  D+ +   +  +        +L+++
Sbjct: 710 ARDYKEAQKIANRVGYPVVVRPSYVLGGRAMEIVYSDEELDHYMKYAVQVEPDHPILVDK 769

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +++   +   V          +     +       +S  ++  +    +P ++   ++  
Sbjct: 770 FLEN-AIEVDVDALCDHTGKVVIGGIMEHIEEAGIHSGDSACSIPHTSLPDEVLSTIREW 828

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
                Q +   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 829 TVKLAQTLKVVGLMNIQYAV--KDNQVYILEANPRASRT----VPYVSKATGRPLAKI 880


>gi|169780672|ref|XP_001824800.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           oryzae RIB40]
 gi|238505138|ref|XP_002383798.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus flavus NRRL3357]
 gi|83773540|dbj|BAE63667.1| unnamed protein product [Aspergillus oryzae]
 gi|220689912|gb|EED46262.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus flavus NRRL3357]
          Length = 711

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 92/288 (31%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 104 AKREGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 163

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P                  I  P +IK +KGG   G+ +          L        
Sbjct: 164 CVPGYHGQNQDPSFLEAEADKIKYPVLIKAIKGGGGKGMRIAHSKSEFQAQLQSAKSEAM 223

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNSVALGERDCSIQRRHQKILEESPAPHLPD 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               D++ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 284 ATRKDLWAKARAAAEA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 327


>gi|70948370|ref|XP_743705.1| hypothetical protein [Plasmodium chabaudi chabaudi]
 gi|56523332|emb|CAH77133.1| hypothetical protein PC000014.02.0 [Plasmodium chabaudi chabaudi]
          Length = 856

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/202 (15%), Positives = 70/202 (34%), Gaps = 12/202 (5%)

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            +    +  +    +I      +     I  P +IK  +GG   GI  ++ +  I     
Sbjct: 212 FENNSINQDIYNKSTIHSLEECISECKRIGYPVMIKASQGGGGKGIRKVENENEIKKYYE 271

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           Q  +      + + +    +     +      D+       S       +          
Sbjct: 272 QVQNELPNSPIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGP 328

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---G 267
           P+ +P  I++E+++ +    + I  RG    ++L+D ++ K ++LE+N       P   G
Sbjct: 329 PSIVPPHIFREMEKASIRLTKMIKYRGAGTIEYLYDQINNKYYFLELNTRLQVEHPVSEG 388

Query: 268 MTPVSIFPEMAA-YAGYSFREL 288
           +T  +I         G   + +
Sbjct: 389 ITDTNIVAIQLQVAMGIPLQNI 410


>gi|332283353|ref|YP_004415264.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7]
 gi|330427306|gb|AEC18640.1| carbamoyl phosphate synthase large subunit [Pusillimonas sp. T7-7]
          Length = 1080

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 95/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  GF+   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKADGFRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D +   +LE   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLVHNGVLEKHGVELIGANEHAIEKAEDRQKFKQAMNDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIGDEAGNSGFPVVIRPSFTMGGSGGGIAYNSEEFESICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +   S+D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDSVDNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQDGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 101/322 (31%), Gaps = 47/322 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL D  ++   +         D D S 
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALRDDDYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHATEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++ +  +  E+    + D  +      +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDHFLNNATEVDVDCIADGEVVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  +I  E++R   L  +A+  +G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSQEIIAEIKRQTELMARALNVKGLMNVQFAI--QDGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 851 ----VPYVSKATGLQLAKIAAR 868


>gi|325963375|ref|YP_004241281.1| carbamoyl-phosphate synthase large subunit [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323469462|gb|ADX73147.1| carbamoyl-phosphate synthase large subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 1104

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +LE   +    + I A  L  D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      + +   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 IHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  +     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQRLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|224437568|ref|ZP_03658526.1| carbamoyl phosphate synthase large subunit [Helicobacter cinaedi
           CCUG 18818]
          Length = 1232

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L+  G++V  I         D D +            +  ++     D    
Sbjct: 29  SGTQAVKTLKSLGYRVVLINSNPATIMTDPDFADRTYIEPITEEIIADIIKRESVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE +E        +         +   +     +P      
Sbjct: 89  TMGGQTALNVAMSMYEKGMLEGIEFLGAKPSAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V                 +  +++LIE+ +
Sbjct: 149 TEEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKAVAKNGLETSPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFK 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33   VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
               ID +R V  V+   KPD    ++H        +   L  +      +       + D
Sbjct: 752  FEPIDFER-VRAVIEREKPDGI--IVHFGGQTPLKLANSLTKINAKIIGTSAKVIDTAED 808

Query: 93   KMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            + +    V++ G+    + +           + I  P +++P        + ++  D  +
Sbjct: 809  REKFASFVNNLGLKQPQNGIAYEKEQAYSVANKIGFPVLVRPSYVLGGRAMRIVYDDDEL 868

Query: 151  PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               + +  + +    +LI+++++       +  D   D   + +     +  E    S +
Sbjct: 869  KQYMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGESVYIGGIMEHIEEAGIHSGD 925

Query: 211  STHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            S   LP     +   +    +       +G  G+    +     + +++ +E+N +   T
Sbjct: 926  SASSLPTINIRESMLKEIEQSTAKIALKLGVVGLMNVQYAI--YNNELYLIEVNPRASRT 983

Query: 270  PVSIFPEMAAYAGYSFRELLLW 291
                 P ++   G    ++   
Sbjct: 984  ----VPFVSKATGLPLAKIATR 1001


>gi|315221721|ref|ZP_07863637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           anginosus F0211]
 gi|315189208|gb|EFU22907.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           anginosus F0211]
          Length = 1059

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 80/267 (29%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   KP        G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIELEKPKGVIVQFGGQTAINLAEPLSKAGVKILGTQVADLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D         +   P   +       + +   I  P +++P        + +++ 
Sbjct: 663 RAEDRDLFEQALKDLNIPQPPGQTATNEEEAVVAASKIGFPVLVRPSYVLGGRAMEIVEN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   +  +   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EADLRSYMRTAVKASPDHPVLVDSYIVGKECEVDAISDGHQVLIPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +   + + +          + C G+    F+      KV+ +E+N + 
Sbjct: 780 SGDSMAVYPPQTLSAQVQRTIADYTKKLAIGLHCIGMMNIQFVI--KDEKVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        ++   ++
Sbjct: 838 SRT----VPFLSKVTDIPMAQVATRLI 860



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYTVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++   + +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKKGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVDFAAKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGVHTGDSIVFAPTQTISDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|255528292|ref|ZP_05395105.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
 gi|255508010|gb|EET84437.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           carboxidivorans P7]
          Length = 1068

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 87/278 (31%), Gaps = 33/278 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  G +   ++ +                       V  ++   KP+       G   
Sbjct: 583 ALKKLGIETIIVNNNPETVSTDFNVSDKLYFEPLTEEDVLNIIEKEKPNGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    + +    T +  +  A   ++            P    I      ++    
Sbjct: 643 IKLAKFLKEKNILTLGTTADQIDMAEDRERFDELLEKLGISRPKGKGIWNTEEGLEEAKK 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+    + 
Sbjct: 703 LGFPVLVRPSYVIGGQGMEITHDEKELIYYLSNAFEKDKKNPILIDKYLMGREIEVDAIS 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + P   I  ++  ++          IG +G
Sbjct: 763 DGKDVLI----PGIMEHLERAGVHSGDSITMYPSQNISAEMKGKILDYTKKIALEIGIKG 818

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           +    F+       ++ +E+N       P ++ VS  P
Sbjct: 819 MINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  I+ +                       V  V+   +PD    
Sbjct: 29  SGTQACEALREEGIEVVLINSNPATIMTDKETADKVYLEPLTLEFVEKVIKEERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            + G  G +  V+      L+   +    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELYDKGILDKYNVKVIGTSIESIKEGEDRELFRNMMNRIGQPVIESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      M     I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 ITDMESGMAFASKIGYPVIVRPAYTLGGTGGGIAENEEELEEILESGLQLSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAVGIEGGCNVQLALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|256825106|ref|YP_003149066.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius
           DSM 20547]
 gi|256688499|gb|ACV06301.1| carbamoyl-phosphate synthase large subunit [Kytococcus sedentarius
           DSM 20547]
          Length = 1118

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  I+ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGLRVILINSNPATIMTDPEFADATYVEPITPEVVERIIAAERPDAVLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        D     +LE    P   + + A  L  D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNCAIDLHEAGVLEKYGCPLIGANVEAIQLGEDRQLFKGVVERCGADVARSVI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P V++P      LG      +  +          +   ++L+E+
Sbjct: 149 CHTMDELLAGAEELGYPLVLRPSFTMGGLGSGFAHNEDELRRMGQAGLRDSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELEVMRDRADNVVVVCSIENLDPMGVHTGDSITVAPALTLTDREYQKLRDVA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVIREVGVDTGGCNIQFAVNPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            M
Sbjct: 325 KM 326


>gi|169832659|ref|YP_001694700.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|226700938|sp|B1IC65|CARB_STRPI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|168995161|gb|ACA35773.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae Hungary19A-6]
          Length = 1058

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E   T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVEFLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|307706740|ref|ZP_07643545.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           SK321]
 gi|307617825|gb|EFN96987.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           SK321]
          Length = 1058

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|332654271|ref|ZP_08420015.1| carbamoyl-phosphate synthase, large subunit [Ruminococcaceae
           bacterium D16]
 gi|332517357|gb|EGJ46962.1| carbamoyl-phosphate synthase, large subunit [Ruminococcaceae
           bacterium D16]
          Length = 1069

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D+ +                V+   +PD     
Sbjct: 30  GTQACRALKEEGIEVVLVNSNPATIMTDKDIADHVYIEPLNIPSVTQVIEKERPDSILPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +          L    +    +   +   + D+   K  + S   P   S  +
Sbjct: 90  LGGQTGLNLAMALHENGTLAKYGVKLLGTSPESIRKAEDRQGFKDCMESINQPCVTSEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   + S+     +  + +   Q+LIE+ 
Sbjct: 150 ESVEDAVAFAEKIGYPVIVRPAYTLGGTGGGIAYDEYSLREISDRGINLSRVGQVLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +     +              +    Y+ ++  A
Sbjct: 210 IAGWKEIEFEVMRDSAGNVITVCSMENIDPVGVHTGDSIVVAPT-QTLANKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LDIISALEIEGGCNCQFALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 91/288 (31%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KP  A     G   
Sbjct: 584 AFRRLGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVQNIVEQEKPWGAVVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T S  + +A   ++                ++   +  + + + 
Sbjct: 644 IKLAKALTEMGVQILGTSSDGVDAAEDRERFDEILEKCGIPRAKGRTVYTTQEALKAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D++I   +   +       +LI++Y+ G EL    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMEIAYSDRNIEEFMKIINMTVQEHPILIDKYLMGRELEVDGVF 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +     + + +      + +G  G+
Sbjct: 764 DGEDILIPGIMEHVERAG---VHSGDSIAVYPPINLEDKHRELILKHTKNMAKHLGVIGL 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + ++    +  ++ +E+N +   T     P ++   G    +L   
Sbjct: 821 INAQYIL--YNDDIYVIEVNPRSSRT----IPYISKVTGVPIIDLATK 862


>gi|222618703|gb|EEE54835.1| hypothetical protein OsJ_02282 [Oryza sativa Japonica Group]
          Length = 1172

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++A  +PD    
Sbjct: 99  SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIAAERPDALLP 158

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+ L +    + + A   + D+   KQ +   G+   PS +
Sbjct: 159 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 218

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + +   P +++P       G  +               + +H  Q+L+E
Sbjct: 219 GTTLEECISIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 278

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 279 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 338

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 339 SVAIIREIGVECGGSNVQFAVNPADGEVMVIEMN--PRVSRSS--ALASKATGFPIAKMA 394

Query: 290 LWM 292
             +
Sbjct: 395 AKL 397


>gi|328953823|ref|YP_004371157.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328454147|gb|AEB09976.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1066

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 100/296 (33%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQACKALRQLGYEIVLVNSNPATIMTDPGMADFTYIEPLNLASMTEIIKKEQPDALLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G        +     +LE   +      + A     D++  K+ ++  G+ +  S +
Sbjct: 89  NLGGQSGLNLSSELARSGVLEKYGVRIIGVEVDAIQRGEDRLAFKETMNRLGIDMPESAI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P V++P       G  ++   + +     +  S +   Q+L+E+
Sbjct: 149 ATSPEEAERIADKLGYPVVVRPAYTMGGWGGGLVYNLEELRTIASRGISASLVGQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +       T  +   I  ++ + +Q+ 
Sbjct: 209 SVLGWEELELEVVRDAKNQMITVCFIENVDAMGVHTGDSFCTAPM-LTIAPELQQLLQKY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++   +AI   G +   F  +P + +V  +EIN +   T  S     +   G+   
Sbjct: 268 SYDIVEAIQVIGGTNIQFAHNPRTGRVVVIEINPR---TSRSS-ALASKATGFPIA 319


>gi|220904368|ref|YP_002479680.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
 gi|219868667|gb|ACL49002.1| carbamoyl-phosphate synthase, large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1080

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D               ++  V+   +PD    
Sbjct: 29  SGSQAVKALKEEGYEVVLVNSNPATIMTDPQLADATYVEPIEHDTLAAVIRKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
            L G         +     L E      G  A  +   + R     +   + +       
Sbjct: 89  TLGGQTALNAALGLAKSGVLAEYGVELIGAQAEVIEKAESRELFREAMEKIGLKMPASGI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      +++  P +++P       G  V      +        + +   +++IEQ
Sbjct: 149 ARTIDEVRQLGNVLPFPLIVRPAFTLGGTGGGVAYNLADLEEVAGNGLAASPTSEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +   +      +  +     
Sbjct: 209 SVLGWKEIEMEVMRDVNDNCVIICSIENLDPMGVHTGDSITVAPVQTLSDAEYQQIRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFGVNPANGEIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.034,   Method: Composition-based stats.
 Identities = 38/263 (14%), Positives = 80/263 (30%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+       G    +  V  +   + I  T    + 
Sbjct: 618 DRLYFEPLTF---EDVMNIVETEKPEGVIVQFGGQTPLNLAVPLMRAGVPILGTSPDAID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   + +     +     I+ P V++P        + V   
Sbjct: 675 RAEDRERFQALIQKLGLLQPPNGTAMSLEDALAVAERIAYPVVVRPSYVLGGRAMAVAYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +               +LI+++++       V  DA  D  ++ V     +  E   
Sbjct: 735 VSELTAYFHAQVPEKPKHPILIDKFLE---HAVEVDVDAISDGKDVYVAGIMEHIEEAGI 791

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP+     D    +        + +   G+    F        ++ LE+N +
Sbjct: 792 HSGDSACVLPSYSLSYDHVALIASQTEALARELKVIGLMNIQFAI--KGDDIYILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G     L
Sbjct: 850 ASRTA----PFVSKATGVPLPYL 868


>gi|148543327|ref|YP_001270697.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           DSM 20016]
 gi|184152735|ref|YP_001841076.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           JCM 1112]
 gi|227364395|ref|ZP_03848487.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           MM2-3]
 gi|325683594|ref|ZP_08163110.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A]
 gi|167006441|sp|A5VHN6|CARB_LACRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|226700932|sp|B2G564|CARB_LACRJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|148530361|gb|ABQ82360.1| carbamoyl-phosphate synthase large subunit [Lactobacillus reuteri
           DSM 20016]
 gi|183224079|dbj|BAG24596.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri
           JCM 1112]
 gi|227070581|gb|EEI08912.1| carbamoyl phosphate synthase large subunit [Lactobacillus reuteri
           MM2-3]
 gi|324977944|gb|EGC14895.1| carbamoyl-phosphate synthase [Lactobacillus reuteri MM4-1A]
          Length = 1056

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVESLSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V            +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQIGLNLAVSLSETGLLDELGIELLGTKLDSIDEAEDREKFKELMNELGEPVPASQT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  H    P +++P       G  +   D  +          +   Q LIE+
Sbjct: 149 VNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLELSPVTQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +                 + Y+ ++  
Sbjct: 209 SIAGYKEIEFEVMRDAADNVMVVCCMENFDPVGIHTGDSIVFAPNQTLSDRE-YQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPQSFQYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 94/291 (32%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   I+ +                       V  V+   +P        G  
Sbjct: 579 KAIQRAGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L +A   +         +   P+  +   +   + +  
Sbjct: 639 AINLAEGLAKNGVNILGTTVDDLDAAEDREVFDQVITDLNLKQPIGLTATTHSAVIKAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        +  +   + +   L Q++S      +LI+ Y++G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     DI +++         A+ C G
Sbjct: 759 CDGKDVLIPGIMEHIEHAG---VHSGDSMAVYPPQHFNDDIKRQIVTATEKLAVALKCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    + +V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--HNHEVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860


>gi|313681206|ref|YP_004058944.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154066|gb|ADR32744.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfuricurvum kujiense DSM 16994]
          Length = 387

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 77/273 (28%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       +V  ++   KPD     +
Sbjct: 23  GKEVAIEAQRLGIEVIAVDRYNHAPAHLVANRSHVVNMQDKEAVLKLIRKEKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D L  A  E   +      +  +    +  R               +       
Sbjct: 83  E-AISIDALFAAEAEGFCVIPNAEAVNKTMNRKNIRRFAAEDLGLKTSRYHFVSTYEDMC 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            S   +  P VIKP+   S  G  + +  + +      +         LI +     +  
Sbjct: 142 ASAEDVGFPCVIKPVMSSSGHGQSIARTREDLAASWEIAKEARGDASELIVEEFIRFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++     K  Q++A      +
Sbjct: 202 ITLLTARNGVETVFCEPIGHI-----QKDGDYIYSWQPMEMSKKALKRSQKIAKAITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G +G+   +        +V++ E++ +P   GM
Sbjct: 257 GGKGLFGVELFV--AGDEVYFSEVSPRPHDTGM 287


>gi|299535895|ref|ZP_07049215.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus fusiformis ZC1]
 gi|298728647|gb|EFI69202.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus fusiformis ZC1]
          Length = 1065

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  I+ +                       V  +L   +PD     
Sbjct: 30  GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPITLDFVSRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   DQ +   +     ++   Q L+E+ 
Sbjct: 150 HNLDEAKRFVAKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +     + ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDAADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 89/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A + DK            P   + +     +     
Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRELDIPQPQGETAVSTEEALVIGER 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + +   P K+       +        + +G  G+
Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQAQKDTLVDYTTRLAKGLGIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +VF +E+N       P ++ ++  P  
Sbjct: 817 MNIQYVISQ--NEVFVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|220912753|ref|YP_002488062.1| carbamoyl phosphate synthase large subunit [Arthrobacter
           chlorophenolicus A6]
 gi|254813554|sp|B8H8U5|CARB_ARTCA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|219859631|gb|ACL39973.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter
           chlorophenolicus A6]
          Length = 1109

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 99/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +LE   +    + I A  L  D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +++   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 IHTMDEALEAAKDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|261403460|ref|YP_003247684.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
 gi|261370453|gb|ACX73202.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
          Length = 480

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     +         D D            + V  ++   +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPKIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       + +L+   I    S I    ++ D+          +  V  C +
Sbjct: 86  TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAEAMAEINEAVTKCKA 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205

Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G +            +  +            +  +   ++    LP +    +    
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A    + +G  G     F  +    +   +E+N  P ++  S     +   GY 
Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314


>gi|260685111|ref|YP_003216396.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CD196]
 gi|260688769|ref|YP_003219903.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           R20291]
 gi|306521871|ref|ZP_07408218.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-32g58]
 gi|260211274|emb|CBA66830.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile CD196]
 gi|260214786|emb|CBE07508.1| carbamoyl-phosphate synthase, pyrimidine-specific, large chain
           [Clostridium difficile R20291]
          Length = 1068

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L     +   I         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|126701217|ref|YP_001090114.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           630]
 gi|115252654|emb|CAJ70497.1| Carbamoyl-phosphate synthase large chain 2 [Clostridium difficile]
          Length = 1068

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 93/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L     +   I         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|227543792|ref|ZP_03973841.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           reuteri CF48-3A]
 gi|300908860|ref|ZP_07126323.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri
           SD2112]
 gi|112945585|gb|ABI26395.1| carbamoylphosphate synthase large subunit [Lactobacillus reuteri]
 gi|227186219|gb|EEI66290.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Lactobacillus
           reuteri CF48-3A]
 gi|300894267|gb|EFK87625.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus reuteri
           SD2112]
          Length = 1056

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   I+ +                       V  V+   +P        G  
Sbjct: 579 KAIQRAGYEAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEQPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L +A   +         +   P+  +   +   + +  
Sbjct: 639 AINLAEGLAKNGVNILGTTVDDLDAAEDREVFDKVITDLNLKQPIGLTATTHSAVIKAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        +  +   + +   L Q++S      +LI+ Y++G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGKAMETVYNQEELQQYLQQNASITADHPILIDAYLEGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P     DI +++         A+ C G
Sbjct: 759 CDGKDVLIPGIMEHIEHAG---VHSGDSMAVYPPQHFDDDIKQQIVTATEKLAVALKCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           I    F+    +R+V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 816 IMNIQFIV--HNREVYILEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++   ++ +                      S+  ++    PD    
Sbjct: 29  SGTQACLALREEGYETILVNSNPATIMTDKEIADHVYIEPLTVDSLSRIIRQEYPDAILP 88

Query: 57  VLHGNFGEDGLVQAILEL------LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V            +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQIGLNLAVSLSKTGLLDELGIELLGTKLDSIDEAEDREKFKELMNELGEPVPASQT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  H    P +++P       G  +   D  +          +   Q LIE+
Sbjct: 149 VNTVDEAVEFAHQCGYPVIVRPAFTMGGTGGGICHNDAEMRTVAKNGLELSPVTQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +F    +                 + Y+ ++  
Sbjct: 209 SIAGYKEIEFEVMRDSADNVMVVCCMENFDPVGIHTGDSIVFAPNQTLSDRE-YQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPQSFQYNVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|83594218|ref|YP_427970.1| carbamoyl phosphate synthase large subunit [Rhodospirillum rubrum
           ATCC 11170]
 gi|83577132|gb|ABC23683.1| carbamoyl-phosphate synthase large subunit [Rhodospirillum rubrum
           ATCC 11170]
          Length = 1082

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALRAEGYRVILVNSNPATIMTDPETADATYIEPITPEIVEAIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +    + +L    +    +     A + D++  +  +   G+    S  
Sbjct: 89  TMGGQTALNTAMALADRGVLTKYGVEMIAANKEVIAKAEDRLLFRDAMRKIGLDCPRSAL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +     +  +   I  P +I+P       G  +    +     +    + +   Q+L+E+
Sbjct: 149 VHSIEESRQALEEIGLPVIIRPSFTLGGQGGGMAFNREEYDRIVASGLAASPVRQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQVMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACLREIGVETGGSNVQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/164 (14%), Positives = 56/164 (34%), Gaps = 10/164 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              +  P VI+P        + ++  +  +   ++ +   +  D +LI+ Y+ G IE+  
Sbjct: 714 ATRVGYPVVIRPSYVLGGRAMQIVHDEAQLNDYMVNAVKVSGDDPVLIDNYLSGAIEVDV 773

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +           ++  + P  +      E+ +      + + 
Sbjct: 774 DAIADGETTHIAGIMQHIEEAGIHSG---DSACSLPPYSLDEATIAELTKQTEALAKGLN 830

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            RG+    F        ++ LE+N +   T     P +A   G 
Sbjct: 831 VRGLMNIQFAI--KDGDIYILEVNPRASRT----VPFVAKATGV 868


>gi|291570064|dbj|BAI92336.1| carbamoyl-phosphate synthase large subunit [Arthrospira platensis
           NIES-39]
          Length = 1077

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N           + + P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 42.6 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D+ +   +  +        +L++++++       
Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
                +     + +     +  +    S +S   +P +   + +   ++R      +A+ 
Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALN 826

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F       +V+ LE N +   T     P ++   G    ++   
Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872


>gi|284049940|ref|ZP_06380150.1| carbamoyl phosphate synthase large subunit [Arthrospira platensis
           str. Paraca]
          Length = 1077

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVACCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N           + + P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGTYPLIIRPAFTMGGTGGGIAYNQEEYEELAMGGLDASPMSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 42.6 bits (98), Expect = 0.080,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D+ +   +  +        +L++++++       
Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
                +     + +     +  +    S +S   +P +   + +   ++R      +A+ 
Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQTLSETVLATIRRQTIQLAKALN 826

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F       +V+ LE N +   T     P ++   G    ++   
Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872


>gi|262278629|ref|ZP_06056414.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
 gi|262258980|gb|EEY77713.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
          Length = 1201

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ ++  +  +       S     +      Y++       
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGLYLEKFVQHAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +        +  V         ++  +       PA    +   +  Q++A    Q++ 
Sbjct: 207 HIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQCDYLQKVAIQLMQSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+ D  +++ ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 267 YRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV---DLVEWMVTL 315

Query: 296 ASCL 299
           AS  
Sbjct: 316 ASGD 319


>gi|254526071|ref|ZP_05138123.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9202]
 gi|221537495|gb|EEE39948.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9202]
          Length = 1098

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 96/315 (30%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            + G    +  V+              I A   +++K   +++       +  ++     
Sbjct: 89  TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASNLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAINPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339



 Score = 40.6 bits (93), Expect = 0.25,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 64/177 (36%), Gaps = 8/177 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++K +  +   + ++   +    +L++QY++   +   
Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYITEAVKVSPDHPILLDQYLNN-AIEID 782

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V        + +     +       +S  ++  +    + L   + V++   L  Q +  
Sbjct: 783 VDALCDSKGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNV 842

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G+    F     + K   +F LE N +   T     P ++   G    +L   +++
Sbjct: 843 VGLINLQFAVTNTNNKENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895


>gi|157413412|ref|YP_001484278.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157387987|gb|ABV50692.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 1098

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 96/315 (30%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I         D D              V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIILINSNPASIMTDPDIANKTYIEPLTSEIVSQIILKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            + G    +  V+              I A   +++K   +++       +  ++     
Sbjct: 89  TMGGQTALNLAVKLSESDFLKQNNIELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +     S+ + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASDLDEAMEVSKEISSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEYELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAINPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339



 Score = 41.4 bits (95), Expect = 0.18,   Method: Composition-based stats.
 Identities = 25/177 (14%), Positives = 65/177 (36%), Gaps = 8/177 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++K +  +   + ++   +    +L++QY++   +   
Sbjct: 724 AKNIGFPLVVRPSYVLGGRAMEIVKDENELSRYINEAVKVSPDHPILLDQYLNN-AIEID 782

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V      + + +     +       +S  ++  +    + L   + V++   L  Q +  
Sbjct: 783 VDALCDSNGSVVIAGLMEHVEPAGIHSGDSACCLPSISLSLSTIENVRKWTKLIAQRLNV 842

Query: 241 RGISRSDFLFDPLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            G+    F     + K   +F LE N +   T     P ++   G    +L   +++
Sbjct: 843 VGLINLQFAVTNTNNKENKLFILEANPRASRT----VPFVSKAIGKPIAKLATQLMQ 895


>gi|154487011|ref|ZP_02028418.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis
           L2-32]
 gi|154084874|gb|EDN83919.1| hypothetical protein BIFADO_00849 [Bifidobacterium adolescentis
           L2-32]
          Length = 1126

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPEMADATYIEPISTPILEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  +      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAMALGEAGVLKKYNVELIGASLDAIDRGEDRELFKKVVEEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +   +  +         ++  D++LIE+
Sbjct: 149 AHSLEEVDKIAEKFGYPLVVRPSFTMGGLGSGIAHDEDELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDKKDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAVNPGTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|255308625|ref|ZP_05352796.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           ATCC 43255]
          Length = 1068

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L     +   I         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       +   I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNTPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 ANELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|299821733|ref|ZP_07053621.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM
           20601]
 gi|299817398|gb|EFI84634.1| carbamoyl-phosphate synthase, large subunit [Listeria grayi DSM
           20601]
          Length = 1069

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYRVVLVNSNPATIMTDTEMADKVYIEPITLDFVSRIIRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110
           L G  G + +   + E   +      +L + L+  K        R         VP    
Sbjct: 90  LGGQTGLN-MAMELAEAGILEECGVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPDSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I            I  P +++P       G  +   D+ +   +      +   Q L+E+
Sbjct: 149 IHNLEEAKRFVERIGYPVIVRPAYTLGGSGGGICHDDKDLQEIVSSGLKLSPVTQCLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   + V   +       ++  +        +    Y+ ++ +
Sbjct: 209 SIAG-FKEVEYEVMRDANDNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKIIRALEIEGGCNVQLALDPDSYNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   +P        G   
Sbjct: 580 AIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTVEDVMHVIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +       + ++I  T    +  A + D+        +   P   +       +     
Sbjct: 640 INLAEGLAAKGVKILGTSLEAIDRAENRDEFEKALEKLAIPQPEGKTATSVEEALTIARQ 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +++ ++ +   +  +   N    +L+++YV G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVESEEGLKYYMNNAVKVNPKHPVLVDRYVQGQEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P  +I   +   +          +   G
Sbjct: 760 DGENVLI----PGIMEHIERAGVHSGDSIAVYPAQRISQKVKDTIVDYTTRLAIGLDIIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    ++      +VF +E+N +   T     P ++         +   ++
Sbjct: 816 MLNIQYVI--AGEEVFVIEVNPRSSRTA----PFLSKITDIPMANVATKII 860


>gi|148272964|ref|YP_001222525.1| putative carbamoyl-phosphate synthase large subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
 gi|167006437|sp|A5CRX5|CARB_CLAM3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147830894|emb|CAN01838.1| putative carbamoyl-phosphate synthase large subunit [Clavibacter
           michiganensis subsp. michiganensis NCPPB 382]
          Length = 1096

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D                +  ++   +PD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPGFADATYIEPITSEVLEKIIIKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +  ++      L    +    + + A     D+   K +V      V     
Sbjct: 89  TLGGQTALNAAIRLDELGILAKHGVELIGAKVEAIQKGEDRQLFKDLVIESGADVARSHV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P VI+P      LG       Q +   +      +   ++L+E+
Sbjct: 149 AKTLEQAVEFAEDLGYPLVIRPSFTMGGLGSGFAHTRQELERMVADGLQSSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D T +     +     +      +          +        
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQHMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIRRVGVDTGGCNIQFAVDPADGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|56419330|ref|YP_146648.1| carbamoyl phosphate synthase large subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379172|dbj|BAD75080.1| carbamoyl-phosphate synthase(arginine-specific) large chain
           [Geobacillus kaustophilus HTA426]
          Length = 1042

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVEAVEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLNESPIHQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 637 QFGGQTAINLVKGLEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLVANNAEE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P       G+ ++  +  +   + Q         +LI+ Y+DG E
Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLAALIEQGELTY---PILIDAYLDGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAH 235
               ++ D     T+I +P    +  +    S +S   LPA+    +   ++   A    
Sbjct: 754 AEADIVTD----GTDIVLPVIIEHVEKAGIHSGDSYAWLPAQTLTGEEKAKIIDYAGRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|149174998|ref|ZP_01853622.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Planctomyces maris DSM 8797]
 gi|148846335|gb|EDL60674.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large chain
           [Planctomyces maris DSM 8797]
          Length = 1084

 Score = 61.4 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     +  V+   KPD    
Sbjct: 29  SGTQACKALREDGYEVVLVNSNPATIMTDPETAHRTYIEPITWQYIQKVIEIEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G         +     L ++     G   + ++  + R +   +   + +       
Sbjct: 89  TLGGQTGLNAAMDLARRGILDQLGVELIGAKEAVIAKAESRDQFKEAMTKIGLDCPRSAV 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              M+  +     I  P +I+        G  V    +     +    + +  +++L+E+
Sbjct: 149 VHNMEEANAAVKDIGLPIIIRASYTLGGTGGGVAYNREEFVEKVRSGLALSPVNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SILGWKEYEMEVMRDQADNVVIICAIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAT 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IACMREIGVETGGSNVQFAVNPDTGRMTIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 93/286 (32%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G +   ++                         V  +   +KPD       G   
Sbjct: 593 ALQELGIESIMVNSNPETVSTDYDTSDHLFFEPLTTEDVLNICDRMKPDGVIVQFGGQTP 652

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T   ++ +A   ++ ++         P            +    
Sbjct: 653 LNLARGLEAAGVNIIGTSPEMIDAAEDRERFQAILEKLELHQPPNGIATDTESARNVASK 712

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + +   ++S+   + ++ + +    +L++++++       V  
Sbjct: 713 IGYPILVRPSYVLGGRAMEICYDEESLVRYMNEAVNASPDHPVLVDRFLED---AIEVDV 769

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           DA  D     V     +  E    S +S  VLP     + +  E++R      + +  +G
Sbjct: 770 DAISDGITTLVGGVMEHIEEAGVHSGDSACVLPPHSLPESVINEIKRATHALARELKVKG 829

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    F       +  V+ LE+N +   T     P ++   G S  
Sbjct: 830 LMNIQFAVKQTDDEYKVYILEVNPRASRTS----PFVSKATGISLP 871


>gi|312135186|ref|YP_004002524.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
 gi|311775237|gb|ADQ04724.1| carbamoyl-phosphate synthase, large subunit [Caldicellulosiruptor
           owensensis OL]
          Length = 1075

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 98/318 (30%), Gaps = 42/318 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     +  ++   + D    
Sbjct: 29  SGSQACKALKEEGIEVVLINSNPATIMTDKTMADSIYIEPITCEIIEKIIQKERVDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L    G +         IL+   +    + I A   + D+   +   +     V     
Sbjct: 89  TLGKQTGLNTAVELYKSGILDKYNVKVIGTNIEAIEFAEDRLLFKELMIKIGEPVVPSDV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +   ++       +  S++   Q+L+E+
Sbjct: 149 VNCVEDGVAFAKKIGFPVIIRPAYTLGGTGGGIANNEEEFVEIARKGLSYSPVHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
            + G                 +    +      +   + +S  V P++      Y+ ++ 
Sbjct: 209 SIKG--WKEIEYEVMRDSNGCLITVCNMENIDPVGIHTGDSIVVAPSQTLSDKEYQMLRT 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+   G     F  +P S +   +E+N  P ++  S     +   GY    + 
Sbjct: 267 SALKIIDALKIEGGCNVQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARIA 322

Query: 290 LWM--------VEDASCL 299
             +        +E+A   
Sbjct: 323 AKIALGYTLDEIENAITK 340



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 98/293 (33%), Gaps = 34/293 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  +   AL   G K   I         D D S  L    L  +   N++          
Sbjct: 578 SVHSVY-ALSKLGIKSVIINNNPETVSTDFDTSDILFFEPLTKEDVLNIIETVKAEGVIV 636

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN--RF 116
                    +   L    I    +      ++ D+ R  ++++   +           + 
Sbjct: 637 QFGGQTAIKLSQQLAKEGIKIFGTSAEGIDIAEDRERFDKILNKLNIKRPQGFTCYTLQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++  + +  P +++P       G+ +   D  I   L  + +  +   +LI++Y+ G E
Sbjct: 697 ALEIANSLGYPVLVRPSYVLGGQGMKIAFDDDDIVEMLSYAKN-LNDHPILIDKYIVGKE 755

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    + D    +     P    +       S +S  + PA+     I   +    +   
Sbjct: 756 IEVDAISDGEDILI----PGIMEHIERAGVHSGDSISLYPARNISKYIEDRIVEYTYKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + + C+G+    F+    + +++ +E+N +   T     P ++   G    EL
Sbjct: 812 KELECKGLINVQFIV--QNEELYVIEVNPRGSRT----VPFLSKVTGVPMVEL 858


>gi|251771868|gb|EES52442.1| carbamoyl-phosphate synthase, large subunit [Leptospirillum
           ferrodiazotrophum]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 31/301 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++VS +         D D              V  VL   +PD    
Sbjct: 29  SGTQAVKTLKEEGYRVSLVNSNPATIMTDPDLADATYMVPLTVEKVSEVLERERPDAILP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         IL+ L I    S +    ++ D+ + K+ ++  G+ V  S L
Sbjct: 89  TMGGQTALNLAVALARDGILDRLGIVLLGSSLETIEMAEDRGKFKEAMARIGLSVPQSFL 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  +S P +I+P       G  V+   +     +L     +   ++L+E+
Sbjct: 149 VRSLPEAMETLSSLSFPLLIRPSFTLGGTGQSVVYNREEFSRAVLFGIDQSPIGEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SLIGWKEFELEVVRDKKDNAIIVCSIENVDPMGVHTGDSITVAPAMTLTDREYQRLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   +   +E+N  P ++  S     +   G+    +  
Sbjct: 269 IDILREVGVETGGSNVQFAVNPADGRFVVIEMN--PRVSRSS--ALASKATGFPIARVAT 324

Query: 291 W 291
            
Sbjct: 325 R 325



 Score = 42.2 bits (97), Expect = 0.084,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +   +  E+ R   +  +A+  +G+    F     +  V+ LE+N +   T  
Sbjct: 793 CFIPPRSLSETVLAEICRQTRVLGEALSVKGLMNIQFAV--QNETVYVLEVNPRASRT-- 848

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P  +   G S  +L + +
Sbjct: 849 --VPFTSKAIGLSLPKLAMRI 867


>gi|222148841|ref|YP_002549798.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium
           vitis S4]
 gi|221735827|gb|ACM36790.1| propionyl-coenzyme A carboxylase alpha polypeptide [Agrobacterium
           vitis S4]
          Length = 1243

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 61/184 (33%), Gaps = 18/184 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              LI  P ++K   GG  +G+ +     S+                    Y++      
Sbjct: 146 QAELIGYPVMLKSTAGGGGIGMQLCHDATSLQAAFDTVQRTAKASFGDARVYLERFVSKA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +        +  V         L+  +       PA    D + + +   A    +++
Sbjct: 206 RHVEVQIFGDGQGRVIALGERDCSLQRRNQKVIEETPAPGLSDAVRQRLHAAAVSLGRSV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R     +F++DP  ++ ++LE+N       P +T         A  G    +L+ WM+
Sbjct: 266 HYRSAGTVEFIYDPARKEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMI 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RQAA 317


>gi|160892510|ref|ZP_02073300.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50]
 gi|156865551|gb|EDO58982.1| hypothetical protein CLOL250_00039 [Clostridium sp. L2-50]
          Length = 1067

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A E  G++   +         D D              V  ++   +PD A     G   
Sbjct: 583 AFERKGYQTIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVDLERPDGAVVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++      +++ + 
Sbjct: 643 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTRDEALEAANE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 703 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHVQEHPVLVDKYIMGKEVEVDAVC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     I + ++        ++   G
Sbjct: 763 DGEDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKIKRVIEDYTRKLANSLHVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 819 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 863



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/317 (13%), Positives = 97/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G  V  I+        D+ +                V+   KPD     
Sbjct: 30  GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTADVVKAVIEKEKPDSLLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G    +  ++           + +  T S  +  A    + +         V     +
Sbjct: 90  LGGQAALNIAMELEESGFLREHDVMLIGTSSSTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  + + ++     L+     +   Q+L+E+ 
Sbjct: 150 TTVKAGLEFVKKIGYPVVLRPAYTLGGSGGGIAENEEEFVEILMNGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +  RG     F   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNIRGGCNVQFALHPTTFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYNLDEIQNAITKK 341


>gi|88705674|ref|ZP_01103384.1| Carbamoyl-phosphate synthase large chain [Congregibacter litoralis
           KT71]
 gi|88700187|gb|EAQ97296.1| Carbamoyl-phosphate synthase large chain [Congregibacter litoralis
           KT71]
          Length = 1072

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                      +V  ++   KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPSMADATYIEPIEWQTVQRIIEVEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G        D   + +LE   +    +   A   + D+    Q +   G+       
Sbjct: 89  TMGGQTALNCALDLAREGVLEANGVELIGATKEAIDKAEDRELFDQAMKRIGLETPRASF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 ARSMDEAHAVLDKIGFPCIIRPSFTMGGSGGGIAYNREEFEEICVRGLDLSPTSELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SLIGWKEYEMEVVRDRNDNCIIICAIENFDAMGVHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVETGGSNVQFGMCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 40.2 bits (92), Expect = 0.36,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 101/299 (33%), Gaps = 37/299 (12%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
            A   A+ + G++   I         D D              V  ++A  +P+      
Sbjct: 583 HAVL-AMREDGYETIMINCNPETVSTDYDTSDRLYFEPVTLEDVLEIVAKEQPEGVIVQF 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T    +  A   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARALEAAGVPIIGTTPDAIDRAEDRERFQHLIQDLDLLQPANTTVRSVEEAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           ++   I  P V++P        + ++ +++ +   + ++ S +    +L++ ++   IE+
Sbjct: 702 EAARSIGYPLVVRPSYVLGGRAMEIVYREEDLLRYMREAVSVSDESPVLLDSFLSAAIEV 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  ++  + P  +P  +  E++        A
Sbjct: 762 DIDAVSDGEQVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAAVQDEMREQVRQMALA 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTP---VSIFPEMAA-YAGYSFRE 287
           +G +G+      +     +V+ +E+N       P ++     S+    A   AG S ++
Sbjct: 819 LGVKGLMNVQLAW--QDEQVYVIEVNPRASRTVPFVSKCIGTSLAKVAARCMAGVSLKD 875


>gi|33592551|ref|NP_880195.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis
           Tohama I]
 gi|33572197|emb|CAE41743.1| carbamoyl-phosphate synthase large chain [Bordetella pertussis
           Tohama I]
 gi|332381969|gb|AEE66816.1| carbamoyl phosphate synthase large subunit [Bordetella pertussis
           CS]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + G++   +         D D S 
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVSIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                P ++   G      L  +   A   R
Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|33595902|ref|NP_883545.1| carbamoyl phosphate synthase large subunit [Bordetella
           parapertussis 12822]
 gi|33565981|emb|CAE36532.1| carbamoyl-phosphate synthase large chain [Bordetella parapertussis]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + G++   +         D D S 
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                P ++   G      L  +   A   R
Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|33600433|ref|NP_887993.1| carbamoyl phosphate synthase large subunit [Bordetella
           bronchiseptica RB50]
 gi|33568032|emb|CAE31945.1| carbamoyl-phosphate synthase large chain [Bordetella bronchiseptica
           RB50]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 93/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHHGVLKKHNVELIGANEHAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +   +   +    +  
Sbjct: 149 AHSMDEAWEVQRRIAADIGTAGFPVVIRPSFTLGGSGGGIAYNAEEFEVICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 KELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPQNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 46/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + G++   +         D D S 
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEAEALAHASEIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDATEVDVDCLADGQTVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMAKALNVSGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                P ++   G      L  +   A   R
Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|325695911|gb|EGD37802.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis SK160]
          Length = 1059

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYSVVLVNSNPATIMTDKEIADRVYIEPITLEFVARILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     L        +      +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKSGLLEELGVELLGTKLSAIDQAEDRDLFKQLMEELGQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDEALEFAAGIGYPVIVRPAFTLGGTGGGICSNEEELQEIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        I    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDGADNALVVCNMENFDPVGIHTGDSIVFAPSQTISDYEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKELHIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEADLRSYMRTAVKASPDHPILVDSYILGDECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGRQVLIPGIMEHIERAG---VHSGDSMAAYPPQTLSQKVKDTIADYTKRLALGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEQVYVIEVNPRASRT----VPFLSKVTDIPMAQVATRLI 860


>gi|184200978|ref|YP_001855185.1| carbamoyl phosphate synthase large subunit [Kocuria rhizophila
           DC2201]
 gi|226700929|sp|B2GI87|CARB_KOCRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183581208|dbj|BAG29679.1| carbamoyl-phosphate synthase large chain [Kocuria rhizophila
           DC2201]
          Length = 1106

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+D G +V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGTQALRVLKDEGLRVILVNSNPATIMTDPEFADATYVEPITPETVEKIIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +          LE   +    + + A  L  D+   K VV  CG     S+ 
Sbjct: 89  TLGGQTALNTALALDANGALEKYGVELIGADVDAINLGEDREAFKGVVERCGAESARSVI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P V++P      LG  +   +  +         ++   ++L+E+
Sbjct: 149 VHSMDEALAAAEQLGYPMVVRPSFTMGGLGSGLAYNETDLHRIAGAGIQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M   + D   +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELEMMRDAKDNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDREYQRMRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|169827040|ref|YP_001697198.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus sphaericus C3-41]
 gi|226700934|sp|B1HQC1|CARB_LYSSC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|168991528|gb|ACA39068.1| Carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Lysinibacillus sphaericus C3-41]
          Length = 1065

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  I+ +                       V  +L   +PD     
Sbjct: 30  GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNMAIELDKSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   DQ +   +     ++   Q L+E+ 
Sbjct: 150 HSLDEAKRFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +     + ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDAVDNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/279 (10%), Positives = 90/279 (32%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A + DK        +   P   + +     +     
Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRDLNIPQPQGETAVSTVEALAIGER 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELQHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + +   P K+       +        + +G  G+
Sbjct: 760 DGEHVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQYQKDTLVDYTTRLAKGLGIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +V+ +E+N       P ++ ++  P  
Sbjct: 817 MNIQYVISQ--GEVYVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|126649699|ref|ZP_01721935.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905]
 gi|126593418|gb|EAZ87363.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. B14905]
          Length = 1065

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  I+ +                       V  +L   +PD     
Sbjct: 30  GTQACLSLKEEGYRVILINSNPATIMTDTEIADKVYIEPISLDFVSRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      EI  T    +  A   D  R+        VP    I
Sbjct: 90  LGGQTGLNMAIELDQSGILDELGIEILGTKLDAIHKAEDRDLFRNLMYELGAPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   DQ +   +     ++   Q L+E+ 
Sbjct: 150 HSLDEAKKFVVKIGYPVIVRPAFTLGGTGGGICYNDQDLEEIVTSGLKYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +     + ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDAVDNAIVVCNMENVDPVGIHTGDSIVVAPTQTLSDRENQMLRNIS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LDIIRALKIEGGCNVQLALDPYSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/279 (11%), Positives = 89/279 (31%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   +P        G   
Sbjct: 580 AIQEAGYEAIIINSNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEQPIGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    +  A + DK            P   + +     +     
Sbjct: 640 INLADKLAANGVKILGTSLEDIDRAENRDKFEQALRDLDIPQPQGETAVSTVEALAIGER 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYVLGGRAMEIVYNQEELKHYMENAVEASPDHPVLVDRYLTGQEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + +   P K+       +        + +G  G+
Sbjct: 760 DGENVLIPGIMEHIERAG---VHSGDSISVYPPQKLTQHQKDTLVDYTTRLAKGLGIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +VF +E+N       P ++ ++  P  
Sbjct: 817 MNIQYVISQ--GEVFVIEVNPRSSRTVPFLSKITNIPMA 853


>gi|116621513|ref|YP_823669.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter
           usitatus Ellin6076]
 gi|116224675|gb|ABJ83384.1| carbamoyl-phosphate synthase large subunit [Candidatus Solibacter
           usitatus Ellin6076]
          Length = 1070

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL   GF+V  +         D +              +  ++   +PD   +
Sbjct: 29  SGTQAAKALRADGFEVILVNSNPATIMTDPNLADKTYVEPLTRPYLEEIIRRERPDALLS 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  V+     +L+   +    + I A   + D++  K  +   G+    S  
Sbjct: 89  TVGGQTGLNLSVELAEAGVLDKYGVELIGAKIDAIKKAEDRLLFKDAMRKIGLATPQSQL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      ++    I  P +++P       G  +    + +   L +  + +   ++L+E+
Sbjct: 149 ISTVAAGLEFAEKIGYPNILRPSFTMGGTGGGIAYNKEELVEILERGIALSPVHEVLMEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
              G +     +     D   I     +F    +      +          +        
Sbjct: 209 SALGWKEYELEVMRDLADNCIIICSIENFDPMGVHTGDSITVAPAQTLTDREYQMMRDGA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LRCLREIGVDTGGSNVQFAINPDDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 37.2 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 37/265 (13%), Positives = 100/265 (37%), Gaps = 17/265 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +    +V  ++   KPD       G    +  +   L+ L +P   +    
Sbjct: 606 DRLYFEPLTL---ENVLNIVDTEKPDGVIVQFGGQTPLNLALP--LKRLGVPIIGTDPEN 660

Query: 87  SALSMDKMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+    +++    +P     +             +  P +++P        +++ 
Sbjct: 661 IDLAEDRKLFGKLLDDLKIPCPANGTATSVEEACAVAARVGYPVLVRPSYVLGGRAMVIA 720

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             ++ +   + ++ +++    +L++++++       V  DA  D T++ +     +  E 
Sbjct: 721 YDEEMVRQYMREAVTFSQERPVLVDRFLED---ATEVDVDALGDGTDVLIAGIMEHIEEA 777

Query: 205 KYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              S +S+ VLPA+    +I   ++       +A+   G+    +     +  V+ LE+N
Sbjct: 778 GVHSGDSSCVLPAQSLSREILDTIEDYTVRLAKALKVIGLMNVQYAI--QNGVVYVLEVN 835

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
            +   T     P ++   G    ++
Sbjct: 836 PRASRT----VPYVSKATGVPLPKI 856


>gi|319793966|ref|YP_004155606.1| carbamoyL-phosphate synthase, large subunit [Variovorax paradoxus
           EPS]
 gi|315596429|gb|ADU37495.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           EPS]
          Length = 1082

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 82/309 (26%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE--LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--- 111
            + G    +  +       L +     +      +        +           +    
Sbjct: 89  TMGGQTALNCALDLWRNGVLDKYTGASTHKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148

Query: 112 --------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
                            Q  +  P VI+P       G  +            +    +  
Sbjct: 149 GSARSGIAHTMDEAWAVQKTLGFPTVIRPSFTLGGTGGGIAYNPDEFETICKRGIEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/295 (11%), Positives = 96/295 (32%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +S P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 704 EKAAALSYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAVE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +   +     +       +S  ++  + P  +  +   E++R +     A+
Sbjct: 763 CDVDCIRDAEGGTLIGGVMEHIEQAGVHSGDSACSLPPYSLSAETIAELKRQSAAMAAAL 822

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F       K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 NVVGLMNVQFAIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGIQLAKVAAR 873


>gi|167629522|ref|YP_001680021.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167592262|gb|ABZ84010.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 1084

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      S+  ++A  +PD     
Sbjct: 30  GTQACKALKEEGIEVVLVNSNPATIMTDANMADHVYIEPLDVPSLTKIIAQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V       L+   +    + +     + D+   +         +P+   +
Sbjct: 90  LGGQTGLNLAVALSQAGVLDQYNVRLLGTSLETIKKAEDRELFKKTMQEIGEPIPLSEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P +I+P       G  +   +  +     +    +   Q+L+EQ 
Sbjct: 150 SNLDQAVAFARQAGFPLIIRPAYTLGGTGGGIAHTEAELLTICDRGLKKSMIGQVLLEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +       ++  +        +    Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDSNDNCITICNMENLDP-VGIHTGDSIVVAPSQTLTDKEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F   P S     +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKVEGGCNVQFALHPESDSYIVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/246 (12%), Positives = 75/246 (30%), Gaps = 8/246 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KP        G    +         + I  T    + +A    K  +   
Sbjct: 616 EDVLNIVDKEKPRGVVVQFGGQTAINLAAGLHEHGVPILGTSLEGIDAAEDRKKFEALLK 675

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                     S             +  P +++P        + V++  + +   +  +  
Sbjct: 676 RLGIPQSEGRSATSADEAKAIAEELGFPVLVRPSYVIGGRAMEVVENVKDLASYMETAVR 735

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +    +L+++Y+ G E+    + D +  +        +       +S  +     P  +
Sbjct: 736 ISPKHPILVDKYIRGREVEVDAISDGNDTLIPGIFEHIERAG---VHSGDSMAVYPPQSL 792

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    +        +A+G  G+    ++ D    KV+ LE+N +   T     P ++ 
Sbjct: 793 KREERDTIVDYTMRIAKALGVIGLLNIQYVVDGQ-GKVYVLEVNPRASRT----VPILSK 847

Query: 280 YAGYSF 285
             G   
Sbjct: 848 VTGVPM 853


>gi|309776342|ref|ZP_07671330.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915938|gb|EFP61690.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 1068

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  I+ +                          ++   +PD     
Sbjct: 30  GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTLEFASRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110
           L G  G +  V  +     +      IL + L            R         VP    
Sbjct: 90  LGGQTGLNL-VVELANSGILKEYEVEILGTDLDAINKAEDRELFRDLMYEIKEPVPESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P V++P       G      ++ + +        +   Q LIE+
Sbjct: 149 VHTVEEAISFANEIGYPVVVRPAYTLGGTGGGFADNEEELRVIADNGLKLSPVHQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    ++ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDYNDNAIVVCNMENIDPVGIHTGDSMVVAPVQTLSDREHQMLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 89/280 (31%), Gaps = 32/280 (11%)

Query: 26  LEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFNVLH-------------GNFGED 65
           L + G++   I+        D S+   L + +P    +V+H                   
Sbjct: 581 LRECGYEAIVINNNPETVSTDFSISDKL-YFEPLTIEDVMHVVDLEQPLGVVVQFGGQTA 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHL 123
             +   L    +    + +     + D+   + ++    +P             +   + 
Sbjct: 640 INLADQLVERGVKILGTSLENIDRAEDRHAFEAMLHELDIPQPTGQTAVEVEEAVKIANR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVM 182
           I  P +++P        + ++  D+ + + +       +H   +L+++Y+ G EL    +
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVHNDEDLRIYMATAVKEISHDAPILVDKYIVGKELEIDAI 759

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +           + +   P  I   +   +        +     G
Sbjct: 760 CDGEQVYIPGIMEHIERAGIHSG---DSISVYPPQTISDKVRDTIIDYGIRIGKGFHFIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+ +  + +V+ LE+N       P ++ ++  P  
Sbjct: 817 LYNIQFIVEAGTEQVYVLEVNPRSSRTVPFLSKITGVPMS 856


>gi|288553456|ref|YP_003425391.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
 gi|288544616|gb|ADC48499.1| carbamoyl phosphate synthase large subunit [Bacillus pseudofirmus
           OF4]
          Length = 1048

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G KV  ++ +                      S+  ++   KPD     
Sbjct: 30  GTQACLALKEEGIKVILVNNNPATVMTDEACADVVYFEPLTVESIKKIIQKEKPDGILAT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +    +       +E+  T    +      ++ R+     +  VP    +
Sbjct: 90  LGGQTGLNLALALHDKGILEELDVELLGTPIESIKKGEDREEFRALMHELNEPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P +++P       G  + + +  +   +    + +  +Q L+E+ 
Sbjct: 150 TTVDGALQFAESVGYPIIVRPAYTLGGAGGGIAENEAELLRIIKGGLALSPINQCLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDENDTCITICNMENIDPVGIHTGDSMVVAPSQTLTDVEYQMLRSVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +   
Sbjct: 269 VKIIRALGIVGGCNIQFALDPYSKRYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/292 (13%), Positives = 88/292 (30%), Gaps = 34/292 (11%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
           A +L   G++   I+ +                       V  ++   +P+     L G 
Sbjct: 582 AKSLHQLGYEAIIINNNPETVSTDYATADRLYFEPLTVEDVLNIIDIEEPEGVVVGLGGQ 641

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                +       + I  T +  +       K        +       +       ++  
Sbjct: 642 TAISLVEGLEEAGIHIYGTKTETIDQLEDRGKFYEFMNQVNVPHIPGVTAEHKADAIEKA 701

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P       G+++    Q +   L           LLI+ Y  G+EL   V
Sbjct: 702 SEIGYPVLVRPSYVIGGQGMMIATSKQELKEVLDSKQYDLTY-PLLIDAYYPGVELEVDV 760

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +         + +       +S  +        +  ++ + +        + +  R
Sbjct: 761 LTDGNDIYIAGLFEQIEKAG---VHSGDSIAVTPSYSVSDEVKELILTYTSKMAKGMDLR 817

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           GI    F+    S  ++ +EIN +   T     P ++   G     L+ + +
Sbjct: 818 GIFNVQFVLFEES--LYVIEINPRASRT----VPILSKING---ENLIEYTI 860


>gi|325959948|ref|YP_004291414.1| carbamoyl-phosphate synthase, large subunit [Methanobacterium sp.
           AL-21]
 gi|325331380|gb|ADZ10442.1| carbamoyl-phosphate synthase, large subunit [Methanobacterium sp.
           AL-21]
          Length = 1060

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L D G +   +         DVD              V  ++   KPD    
Sbjct: 29  SGSQACKSLMDEGIETVLVNSNPATIQTDVDMADTVYVEPLTPEIVAKIIEKEKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          L+ +E+  +    + +    +      +  +  +P C ++ 
Sbjct: 89  TMGGQTGLNIATGLEKIGALKDVEVIGSSVQTIRNVEDRELFGKFMLELNEPIPHCRAVT 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D+   I  P +++P       G  V    + +     +    +  +Q+LI++ V
Sbjct: 149 TLDEAIDAVTEIGYPVIVRPAFTLGGTGGGVAHNQKELVDIATRGLDMSFINQVLIDESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLA 231
            G                   +  +      +   +  S  V P++   D+  + ++  +
Sbjct: 209 IG--WKEFEYEVVRDKNDTCIIVCNMENLDPMGIHTGESVVVAPSQTLSDVDNQRLRNAS 266

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+  +G     F F+  +     +E+N  P ++  S     +   GY   ++   
Sbjct: 267 IKIIRALQIQGGCNIQFAFNAETGAYKVIEVN--PRVSRSS--ALASKATGYPIAKISSK 322

Query: 292 M 292
           +
Sbjct: 323 I 323



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 86/290 (29%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+D G +   I           D+             V  ++   +PD       G   
Sbjct: 576 ALKDEGIETIIINNNPETVSTDYDISNKLYFEPLTLEDVMSIMDKEEPDGVVVQFGGQTS 635

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V    E ++I  T    +      ++      +                +      
Sbjct: 636 INLAVPLAEEGIQILGTAHESIDRVEDRERFTEVLNLLEIPQADYGIAYSFEDSKLVADK 695

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++     +   + ++   +    +L++++  D IE+    +
Sbjct: 696 IGYPVLVRPSYVLGGRAMEIVYDANELKRYMKEAVKISPEHPILVDKFLEDAIEIDVDAL 755

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  I  ++   ++         +   G
Sbjct: 756 SDGEDVFIGGIMEHIEEAG---VHSGDSACVIPPQSISKEVLDTMKEYTTRLALELEVVG 812

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       KV+ LE N +   T     P ++   G    ++   +
Sbjct: 813 LMNIQYAV--KDEKVYILEANPRASRT----VPFVSKAVGVPLAKIAAML 856


>gi|304315759|ref|YP_003850904.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777261|gb|ADL67820.1| carbamoyl-phosphate synthase, large subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 1073

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 88/290 (30%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G K   I         D D              V  ++   KP     +  G   
Sbjct: 581 ALRSKGVKSIIINNNPETVSTDFDTGDRLYFEPLTLEDVLNIVEKEKPLGVMVMFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    + ++   +K        +   P     L      D    
Sbjct: 641 INLAQGLYSSGVNILGTSFESIDTSEDREKFSKLLKKLNINQPKGGYALSVGDAKDVALT 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        +  +   Q I   +  +   + G  +LI++YV+G E+    + 
Sbjct: 701 LGFPLLVRPSYVIGGQSMEKVNTLQEIIDYVSNAIKVSPGKPILIDKYVEGREVEVDAVS 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  + PA+   +     +          +  +G
Sbjct: 761 DGVDVLI----PGIMEHIERAGVHSGDSFSMYPARNLSEHEIFTIIDYTKKISNVLNVKG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+       V+ LE+N +   T     P M+   G    ++ + +
Sbjct: 817 LINIQFVV--KDGVVYVLEVNPRASRT----VPVMSKATGVPMIDIAVKI 860



 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 94/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L++ G KV  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACKSLKEEGLKVILVNNNPATIMTDTEIADIVYMENPEVDVLEAIIDKERPDGILG 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +         I++   I    + I +   + D+   + K       +    +
Sbjct: 89  TIGGQTGLNVVVKLKESGIIDKYGIKVLGTSIDSIKTAEDRELFKKKMEEIGEPIAESTT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +++P       G  ++  ++ + +        +   ++LIE+
Sbjct: 149 VNNVEDAVKFAEKCGYPLIVRPAFTLGGTGGGIVNNEEELRVVTDMGLKKSMAHEVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D         +F    +                 + Y+ ++  
Sbjct: 209 SLYGYKEIEYEVMRDSNDNCITICNMENFDPVGVHTGDSIVVAPSQTLTDYE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    +A+   G     F  DP S + + +E+N  P ++  S     +   GY 
Sbjct: 268 SLKIIKALKIEGGCNIQFALDPNSHQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|256809979|ref|YP_003127348.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanocaldococcus fervens AG86]
 gi|256793179|gb|ACV23848.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanocaldococcus fervens AG86]
          Length = 481

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/297 (12%), Positives = 90/297 (30%), Gaps = 38/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ + +                     V  ++   +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPDIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       + +L+   I    S I    ++ D+          +  V  C +
Sbjct: 86  TMGGQTGLNLALELHRRGVLDKYGIKLLGSNIKTIEIAEDRELFAKAMAEINEPVTKCKA 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +     +   ++   Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDIASKGLKYSIIHQVLIDE 205

Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G +            +  +            +  +   ++    LP +    +    
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A    + +G  G     F  +    +   +E+N  P ++  S     +   GY 
Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314


>gi|237737121|ref|ZP_04567602.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           mortiferum ATCC 9817]
 gi|229420983|gb|EEO36030.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           mortiferum ATCC 9817]
          Length = 1068

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/279 (14%), Positives = 94/279 (33%), Gaps = 33/279 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  +L   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTADKLYFEPLVTEDIMAILEKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       ++I  T +  +  A   ++        +   P    +      ++  +
Sbjct: 641 AIKLANDLSDRGIKIIGTSADKIDEAEDRERFEEMMEELNINRPKGRGVWDVAHGIEIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P       G+ +   + ++   L  S   +  + +LI++Y++GIEL    +
Sbjct: 701 EIGYPVLVRPSYVLGGQGMEICHDEYNLVKYLEASFERDSANPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +   +   +E+  +     +A+  +
Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYEGTEEELLEITKKMAKALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           G+    F+      K++ +E+N       P ++ VS  P
Sbjct: 817 GMMNIQFI--AYQNKLYVIEVNPRSSRTVPYISKVSGVP 853



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 91/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+A  +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAVADRIYIEPITVEFVEKVIAKERPDSILA 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +  V+     IL+   +    + I +     D+   R         +     
Sbjct: 88  GMGGQTALNMAVELAEKGILDKYGVKVIGTPIESIKRGEDRELFREAMEKIGEPIIKSKI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P V++P       G      D  +   L +  + +   Q+LIE+
Sbjct: 148 VESLEEGFKVANEIGYPVVVRPAYTLGGTGGGFANNDAELEDILSKGLALSRVGQVLIEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++ 
Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQMLRT 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 SALKIVNEIGVVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TRL 324


>gi|329767647|ref|ZP_08259167.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans
           M341]
 gi|328839074|gb|EGF88660.1| carbamoyl-phosphate synthase large subunit [Gemella haemolysans
           M341]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYEVILVNSNPATIMTDKEIADKVYMEPLTLEFVSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + + +   + D+   R      +  VP    I
Sbjct: 90  LGGQVGLNLAVELHKSGILDKYGVELLGTKLSSIEQAEDRELFRDLMNELNEPVPESAII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P +++P       G  +    + +   +     ++   Q L+E+ 
Sbjct: 150 TTLEEAREFVAEIGYPVIVRPAFTMGGTGGGICYDKKDLEEIVSSGLHYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/284 (11%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++DAG++   ++ +                       V  ++ H  P        G   
Sbjct: 580 AIKDAGYEAIIVNNNPETVSTDFTISDKLYFEPLTEEDVMAIINHENPLGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    + +A   DK            P+  +       + +   
Sbjct: 640 INLAAKLEKHGVKILGTALEEIDNAEDRDKFEELLHKLDIPQPLGKTAFDVETAVKNAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ ++  +   +  +        +L ++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYEEAELRRYMKTAVKLTPEHPVLTDRYLVGREIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +      ++        + +   G+
Sbjct: 760 DGETVIIPGIMEHIERAG---VHSGDSIAVYPPQTLTEGEKAKLIEYTIKLAKGLNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAG 282
               ++      +VF LE+N       P ++ ++  P     AG
Sbjct: 817 LNIQYVI--SKGEVFVLEVNPRSSRTVPFLSKITGVPMAKLAAG 858


>gi|322374548|ref|ZP_08049062.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C300]
 gi|321280048|gb|EFX57087.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C300]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|322387503|ref|ZP_08061113.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           ATCC 700779]
 gi|321142032|gb|EFX37527.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           ATCC 700779]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|307704966|ref|ZP_07641854.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus mitis SK597]
 gi|307621476|gb|EFO00525.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus mitis SK597]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAQAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|307709226|ref|ZP_07645685.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis
           SK564]
 gi|307620172|gb|EFN99289.1| carbamoyl-phosphate synthase large chain [Streptococcus mitis
           SK564]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|307708818|ref|ZP_07645280.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           NCTC 12261]
 gi|307615184|gb|EFN94395.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           NCTC 12261]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|306825482|ref|ZP_07458822.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|304432420|gb|EFM35396.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|289168074|ref|YP_003446343.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           B6]
 gi|288907641|emb|CBJ22478.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           B6]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D SV   L    L  +   NV+             G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVVDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQMVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|229075644|ref|ZP_04208626.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18]
 gi|228707420|gb|EEL59611.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock4-18]
          Length = 1018

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +  ++ +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|229098357|ref|ZP_04229303.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29]
 gi|229104449|ref|ZP_04235117.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28]
 gi|229117382|ref|ZP_04246759.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3]
 gi|228666082|gb|EEL21547.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock1-3]
 gi|228678971|gb|EEL33180.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-28]
 gi|228685062|gb|EEL38994.1| Carbamoyl-phosphate synthase large chain [Bacillus cereus Rock3-29]
          Length = 1018

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 94/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTKLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +  ++ +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSDELKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|285018123|ref|YP_003375834.1| carbamoyl-phosphate synthetase large chain protein [Xanthomonas
           albilineans GPE PC73]
 gi|283473341|emb|CBA15846.1| probable carbamoyl-phosphate synthetase large chain protein
           [Xanthomonas albilineans]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYGVELIGAKREAIRMAEDRELFRVAMGEIGLECPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 ARTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTSEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +  + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGINAQTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 39.9 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   +P        G   
Sbjct: 588 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDLEQPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDQLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNESPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R      +A+   G+
Sbjct: 767 IADKDGKVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPATQAELRRQVVELAKALHVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     D     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNDAGDDIVYLLEVNPRASRT----VPFVSKAIGVPLAKIAAR 873


>gi|269856951|gb|ACZ51500.1| DUR1p [Cryptococcus heveanensis]
          Length = 1237

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 50/187 (26%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177
              I  P ++K   GG  +G+ +      I        +       +  +  +       
Sbjct: 154 AEKIGYPVMLKATAGGGGMGLQICWDSSEIEAAFESVHARGATLFSNTSMFMEKYVAKSR 213

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V    +     +   + +          +             + + +   A     +
Sbjct: 214 HVEVQVFGNGLGQAVHFGERECSIQRRHQKVVEECPSPFVHRHPGMRERITSCAVSLASS 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPV-------SIFPEMAAYA----- 281
           +G       +FL D      ++LE+N +     G+T         S+  + A        
Sbjct: 274 VGYGSAGTVEFLVDDTDGAFYFLEMNTRLQVEHGITEQCYGVDLVSLMLQQAEMQARGKG 333

Query: 282 GYSFREL 288
           G  F  L
Sbjct: 334 GIPFDNL 340


>gi|255657546|ref|ZP_05402955.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-23m63]
          Length = 1068

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 92/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L     +   I         D D              V  ++   KP+       G
Sbjct: 580 CVKSLRKMDIETIIINNNPETVSTDFDTSDKLYFEPLTEEEVLSIIEKEKPEGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    + +A   +K            P    +      ++ 
Sbjct: 640 QTAIKLAKFLHEKNIPILGTDFDDIDAAEDREKFDDLLERLDINRPKGKGVWSLNEGIEV 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+   
Sbjct: 700 AKELGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P   I  +I +++          + 
Sbjct: 760 AICDKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLN 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 816 VLGMVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 861



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  + + ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|284161775|ref|YP_003400398.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           profundus DSM 5631]
 gi|284011772|gb|ADB57725.1| carbamoyl-phosphate synthase, large subunit [Archaeoglobus
           profundus DSM 5631]
          Length = 1091

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D D              V  ++    PD    
Sbjct: 29  SGSQACKALKEEGYEVVLVNSNPATIMTDPDMADRVYIEPLTADVVAKIIERETPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            L G         +  +  L E      G    A+   + R         +    P    
Sbjct: 89  TLGGQTALNLAVELGEMGVLDEYGVELIGAKLDAIKKAEDRELFKECMRKIGLDVPRSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G  +    + +   + +    +   Q+LIE+
Sbjct: 149 ARDVDEALAIAEEIGYPVVVRPAFTLGGTGGGIAYNKKELREIVEKGLKLSLIHQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +         ++  +     
Sbjct: 209 GVIGWKEYELEVMRDLADNVVIICSIENFDPMGIHTGDSITVAPAQTLSDVEYQQLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIIRAIGVETGGSNIQFAVHPENGRIVAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 84/289 (29%), Gaps = 31/289 (10%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++   ++                         V  +  + KP+       G    
Sbjct: 592 LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYDNEKPEGVIVQFGGQTPL 651

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +          +I  T    +  A   ++            P            +    I
Sbjct: 652 NIAKDLEESGAKILGTSVDSIDFAEDRERFSKLLEELGIPQPEHGIAHSVEEAKEVARKI 711

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMG 183
             P +++P        + ++  D+ +   + ++   +    +LI+++  D +E     + 
Sbjct: 712 GYPVLVRPSYVLGGRAMEIVYDDEELERYVREAVEVSPEKPILIDKFLEDAVEAEVDALC 771

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  ++  + P  +P  I   +         A+   G+
Sbjct: 772 DGEEVVIGGILEHIEEAG---VHSGDSACVIPPISLPKHIIDTIIDYTRKIALALKVVGL 828

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               F        V+ LE N +   T     P ++   G    ++   +
Sbjct: 829 INIQFAI--KDNVVYVLEANPRASRT----VPFISKATGLPLAKIAAKL 871


>gi|78355380|ref|YP_386829.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|78217785|gb|ABB37134.1| carbamoyl-phosphate synthase large subunit [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
          Length = 1087

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +P     
Sbjct: 29  SGTQAVKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIIRKERPCALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+      ++  A S D  R         VP    
Sbjct: 89  TLGGQTGLNTALAVAETGVLEECGVELIGATRDVINKAESRDLFRQAMANIGLKVPASGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++P       G  +    + +     Q  + +   ++L+EQ
Sbjct: 149 ARTMDDVRRLGAEMPFPLIVRPAFTLGGSGGGIAYNMEDLEEIASQGLAASMQSEILVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +         ++        
Sbjct: 209 SVLGWKEYEMEVMRDRNDNCVIVCSIENIDPMGVHTGDSITVAPAQTLTDVEYQMMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFGINPENGDMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/263 (14%), Positives = 86/263 (32%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KPD       G    +  V  +   + I  TH   + 
Sbjct: 618 DRLYFEPLTF---EDVMNIVEAEKPDGVIVQFGGQTPLNLAVPLMRAGVPILGTHPDSID 674

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ ++         P   +++     + +   I  P V++P        + V+  
Sbjct: 675 RAEDRERFQALIQKLDLLQPANDTVMSLEEALKASETIGYPVVVRPSYVLGGRAMEVVYD 734

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +      S        +LI+++++   E+    + D         +   +       
Sbjct: 735 AEQLRTYFANSVGKAPEHPILIDKFLENATEVDVDALSDGCDTYVAGIMEHIEEAGIHSG 794

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +P DI +E++R        +   G+    F       +VF LE+N +
Sbjct: 795 ---DSACVIPPHTLPADIVEEIRRQTVALATELKVVGLMNIQFAI--KDGRVFILEVNPR 849

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   G     L
Sbjct: 850 ASRTA----PFVSKATGVPLPRL 868


>gi|239826269|ref|YP_002948893.1| carbamoyl phosphate synthase large subunit [Geobacillus sp. WCH70]
 gi|239806562|gb|ACS23627.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp. WCH70]
          Length = 1040

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      SV  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHEEGILEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +I+P       G  + +  +     + +  + +   Q L+E+
Sbjct: 149 ITSVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIDLVEKGLAESPITQCLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-YKEIEYEVMRDHTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 97/298 (32%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL++ G++   ++ +                       V  V+   +      
Sbjct: 577 SVHSVY-ALQEEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 636 QFGGQTAINLVKGLEEANITLLGVTYDVIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            + +   I  P +++P       G+ ++K +Q +   L Q         +LI+ Y+DG E
Sbjct: 696 LISNAKKIGYPILLRPSYVIGGRGMFIVKNEQQLCALLEQRIITY---PVLIDAYLDGKE 752

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235
               V+ D +  +    +P    +  +    S +S  +LP   I  +   ++   A    
Sbjct: 753 AEVDVVADGNDIL----LPTIIEHVEKAGVHSGDSYAMLPAQTITDEEQSKIITYAEKIV 808

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +  +GI    ++    + +V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 809 KKLQFKGIMNIQYVI--ANDQVYVLEVNPRASRT----VPIVSKATGIPLAQIATKLL 860


>gi|88604413|ref|YP_504591.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1]
 gi|88189875|gb|ABD42872.1| pyruvate carboxylase subunit A [Methanospirillum hungatei JF-1]
          Length = 492

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 82/287 (28%), Gaps = 41/287 (14%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E+S+        A  + G     I  +     +  H   D AF                 
Sbjct: 14  EISIR----VMRACRELGIDTVAIYSEADKDSLFVHY-ADEAFPVGPAPPSKSYLNKERI 68

Query: 57  ----------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                      +H   G   E+     +     I +        A    K+RSKQ +   
Sbjct: 69  ISVAKKAGAEAIHPGYGFLAENAEFAKLCTEEGITFIGPKSKTIAAMGSKIRSKQTMKGA 128

Query: 104 GVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           GVPV P        +D        I  P ++K   GG  +G+ ++     I   +  +  
Sbjct: 129 GVPVLPGTDGGIDDLDMAATVADSIGYPVIVKASAGGGGIGMQIVHDPSEIESAIEGAMR 188

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK- 218
                      +++        +                     ++          P   
Sbjct: 189 IAESAFGDRTVFIEKYLQKPRHVEVQVFCDEHDNRIHMFERECSIQRRHQKLIEEAPCPV 248

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  ++ + +   A    +A+        +FL+D  + + +++E+N +
Sbjct: 249 MTPELRERMTNSALRVAEAVDYVNAGTVEFLYD--NGEYYFMEMNTR 293


>gi|295688377|ref|YP_003592070.1| carbamoyl-phosphate synthase large subunit [Caulobacter segnis ATCC
           21756]
 gi|295430280|gb|ADG09452.1| carbamoyl-phosphate synthase, large subunit [Caulobacter segnis
           ATCC 21756]
          Length = 1097

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       Q +L+   +    +       + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALEEQGVLKKFGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P +I+P    +  G  +    +     + +    +   ++L+E+
Sbjct: 149 CHTLDEAMEGLEFVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 40.6 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59
           AL+  G +   +         D D S  L    L  +    +LH                
Sbjct: 596 ALDAIGVESIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLELLHVEKSKGTLAGVIVQFG 655

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G              + I  T    +  A   ++ +          P             
Sbjct: 656 GQTPLKLAHALEEAGIPILGTSPDAIDLAEDRERFQQLLNGLDIAQPENAIARTWDEARA 715

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P+V++P       G+ +I+  +++   +  +   +    +L++ Y+       
Sbjct: 716 EGDKIGFPFVMRPSYVLGGRGMEIIRDHEAMERYIAGAGEISLEHPILLDHYLS-RATEV 774

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V          +A    +       +S  ++  + P  +  +  +E++R       A+ 
Sbjct: 775 DVDALCDGKDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLKAETVEELKRQTVQMALALN 833

Query: 240 CRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F  +     + +++ LE+N +   T     P +A   G     +   +
Sbjct: 834 VRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAAKI 885


>gi|76880178|dbj|BAE45861.1| D-alanine-D-alanine ligase [Physcomitrella patens subsp. patens]
          Length = 417

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 54/219 (24%), Positives = 92/219 (42%), Gaps = 45/219 (20%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           +A++ GG S ER +SL+S ++    LE     VS   ++                     
Sbjct: 113 VALVCGGPSEERGISLNSARSVLDHLEGGDVSVSCYYMNQKLEPFGIPSALMYSNTPEDF 172

Query: 40  -----------RSVGLVLAHLKP--DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
                      +S    L HL+   D+ F  LHG FGEDG +QA+LE   +PY  +G  A
Sbjct: 173 DFKIASTARSFKSQAEFLEHLQATSDIVFPALHGRFGEDGGIQALLESAGLPYIGTGAAA 232

Query: 87  SALSMDKMRSKQVVSSCGV-----------PVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
           + ++ DK  +   ++  G             V  + L   F  ++ +  S   V+KP + 
Sbjct: 233 AQVAFDKYDAAAEMAWHGFATLPIFLVENGKVDINRLRGWFEDNNINANSGRVVVKPARS 292

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           GSS+G+ V +   +         +    D+++IE + +G
Sbjct: 293 GSSVGVSVAEGLDTAVQHAEALFNKGGNDRVVIEMFAEG 331


>gi|312112027|ref|YP_003990343.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
 gi|311217128|gb|ADP75732.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y4.1MC1]
          Length = 1041

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      SV  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 ITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLAESPITQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-YKEIEYEVMRDNTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRTS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   ++ +                       V  V+   +      
Sbjct: 577 SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 636 QFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            + +   I  P +++P       G+ ++K +Q +   L Q         LLI+ Y+DG E
Sbjct: 696 LVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLRALLEQGMIAY---PLLIDAYLDGKE 752

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235
               V  D +  +    +P    +  +    S +S  VLP   I  +   ++   A    
Sbjct: 753 AEVDVAADGNDIL----LPTIIEHVEKAGVHSGDSYAVLPAQTIANEEQSKIITYARKIV 808

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +  +GI    ++    + +V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 809 KKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPLAQIATKLL 860


>gi|257126366|ref|YP_003164480.1| carbamoyl phosphate synthase large subunit [Leptotrichia buccalis
           C-1013-b]
 gi|257050305|gb|ACV39489.1| carbamoyl-phosphate synthase, large subunit [Leptotrichia buccalis
           C-1013-b]
          Length = 1061

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 31/287 (10%), Positives = 96/287 (33%), Gaps = 32/287 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++++G++   ++ +                       V  ++   +P+       G  
Sbjct: 579 KAIKESGYEAIIVNNNPETVSTDFSISDKLYFEPLTEEDVMAIVELEQPEGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +   +     ++I  T    + +A + DK  +     +   P+  +       + +  
Sbjct: 639 AINLAEKLSRHGVKILGTALEEIDNAENRDKFEALLHRLNIPQPLGKTAFDTETAVKNAA 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++ +++ +   +  +   +    +L ++Y+ G E+    +
Sbjct: 699 EIGYPVLVRPSYVLGGRAMEIVYREEELRQYMENAVKVSPDHPVLTDRYLVGKEIEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  +     P  +  +  + +        + +   G
Sbjct: 759 CDGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNVTDEQKQTLIDYTIRLARGLNIVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AAYAGY 283
           +    ++      +V+ LE+N       P ++ ++  P    A  G 
Sbjct: 816 LLNIQYVISE--GQVYVLEVNPRSSRTVPFLSKITGVPMANLAMKGI 860



 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLREEGYKVILVNSNPATIMTDKEIADKVYIEPLTVEFVSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         +LE   +    + + +   + D+   R         VP    I
Sbjct: 90  LGGQVGLNLAVELHESGVLEECGVELLGTKLESIKQAEDRELFRDLMNELKEPVPESDII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +   D+ +   +     ++   Q L+E+ 
Sbjct: 150 HNLEEARKFVEKIGYPVIVRPAFTMGGTGGGICHNDEELEDIVTNGLRYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 ISG-YKEIEYEVMRDSNDTAIVVCNMENIDPVGIHTGDSIVVAPSQTLTDREYHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+   G        DP S   + +E+N  P ++  S     +   GY 
Sbjct: 269 LKIIRALKIEGGCNVQLALDPYSFNYYIIEVN--PRVSRSS--ALASKATGYP 317


>gi|190346662|gb|EDK38801.2| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 404

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/278 (17%), Positives = 93/278 (33%), Gaps = 25/278 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55
           +A+     S+E   SL       SA     L   G +   ID+D  V + +   K D+  
Sbjct: 34  IAI----YSAEDAESL----HVLSADEAMLLPGVGAQAY-IDIDHVVSVAINS-KADVVV 83

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---IL 112
              +G   E     A LE   I +      +      K  ++ +  S  VPV P    I 
Sbjct: 84  PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLL 167
                    + I  P ++K   GG  +G+ V  ++  +     +  S     +N+    L
Sbjct: 143 DIAEAQSIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +    G  +   V G+    V      +        +     +           + K++
Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQR-RHQKVIEEAPSPFVENGRTSLRKQL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A     ++  +     +FL D  +   ++LE+N +
Sbjct: 262 VTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNTR 299


>gi|331266652|ref|YP_004326282.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           Uo5]
 gi|326683324|emb|CBZ00942.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           Uo5]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAVSIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|149277329|ref|ZP_01883471.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39]
 gi|149232206|gb|EDM37583.1| carbamoyl-phosphate synthase large subunit [Pedobacter sp. BAL39]
          Length = 938

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIGDHVYLWPLTVDSIEQILTERKIDAVLP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G       ++   + + E   +      + A   + ++   +Q++   GV V PS  
Sbjct: 89  TMGGQTALNLCKEAEERGVWEKHGVRVIGVDVDAIEKTENREAFRQLMIDIGVGVAPSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P       G   + K +     L +    +   ++L+E+
Sbjct: 149 ANSFLEGKEAAQQIGYPLVIRPSYTLGGSGGGFVHKKEDFDHALQRGLEASPTHEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +F    +      +                 + 
Sbjct: 209 AVFGWKEYELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P +  +  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPENDDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/274 (12%), Positives = 88/274 (32%), Gaps = 11/274 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+     L G        +     ++I  T    + 
Sbjct: 611 DKLYFEPVFW---EHVREIIDLEKPEGVIVQLGGQTALKMAEKLHENGIKIIGTSYNDMD 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P           +   + +  P +++P       G+ ++  
Sbjct: 668 VAEDRGRFSDLLKELEIPYPRYGVAENAEEAIVVANEVGYPVLVRPSYVLGGQGMSIVIN 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   +++      G+++LI+ ++D           +  +   I             +
Sbjct: 728 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEETESDSISDGEDVHIVGLMEHIEP-AGIH 785

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +   +  +++  +    +A+   G+    F       KV+ +E N + 
Sbjct: 786 SGDSSAVLPPFSLSEKVMNDMEVYSKKIAKALNVIGLLNIQFAV--KDEKVYVIEANPRA 843

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             T     P +A      +  +   ++  A+ L+
Sbjct: 844 SRT----VPFIAKAYDVPYINIAAKVMLGAAKLK 873


>gi|94499475|ref|ZP_01306012.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65]
 gi|94428229|gb|EAT13202.1| Allophanate hydrolase subunit 2 [Oceanobacter sp. RED65]
          Length = 1222

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +             +      +++       
Sbjct: 147 AQQIGYPVMLKSTAGGGGIGMQLCQNQSDLENAFDSVKRLGSNNFSNDGIFLEKYITNAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +             +  +       PA      I +++   A     ++ 
Sbjct: 207 HIEVQVFADGKGNALAIGERDCSSQRRNQKVVEECPAPNLSQSIREQLHNTAEALLASVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVED 295
            R     +F++D    + ++LE+N             +    G +   +  +L+ WM+  
Sbjct: 267 YRNAGTVEFIYDSDEEQFYFLEVNT-----------RLQVEHGVTETVYDIDLVEWMLRL 315

Query: 296 AS 297
           AS
Sbjct: 316 AS 317


>gi|149184451|ref|ZP_01862769.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
 gi|148831771|gb|EDL50204.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp.
           SD-21]
          Length = 1108

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIKALKEEGYRVILVNSNPATIMTDPEMADATYIEPITPEIVAKIIDKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G               LE   +    +   A   + ++ R ++ +   G+    S +
Sbjct: 89  TMGGQTALNCALALFNDGTLEKYGVQMIGANADAIDKAENRQRFREAMDKIGLESARSGV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N        L     P +I+P       G  +          + +    +   ++LIE+
Sbjct: 149 ANTVDEAFAVLERTGLPAIIRPSFTLGGTGGGIAYNKAEFDKIVREGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDRKDNCIIICSIENVDPMGVHTGDSITIAPALTLTDKEYQIMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IEVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/161 (18%), Positives = 66/161 (40%), Gaps = 10/161 (6%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGV 181
            I  P +++P        + ++  +  +   +  + + +    +L++QY  D +E    V
Sbjct: 743 RIGYPVLLRPSYVLGGRAMEIVDSEPQLDDYINTAVNVSGDSPVLVDQYLRDAVECDVDV 802

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D S       +   +       +S  ++  + P  +P DI +E++R A    +A+  R
Sbjct: 803 VSDGSEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLPADIVEEMERQAKALAEALEVR 859

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           G+    F       +V+ +E+N +   T     P +A   G
Sbjct: 860 GLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894


>gi|302344544|ref|YP_003809073.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii
           DSM 2075]
 gi|301641157|gb|ADK86479.1| carbamoyl-phosphate synthase, large subunit [Desulfarculus baarsii
           DSM 2075]
          Length = 1084

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +V  ++ +                       V  VL   +PD    
Sbjct: 29  SGTQAVKAIKEEGIQVVLVNSNPATIMTDPELADRTYVEPITCEFVCEVLRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  ++     +      E+      ++  A S  + R         VP    
Sbjct: 89  TLGGQTALNTALEVAQTGILEELGVEMIGATPAVIRKAESRQEFREAMEKIGLRVPGSVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P       G  V      +        S +   +++IE+
Sbjct: 149 CRNLDDVRRAAEELGFPLVVRPAFTLGGTGGGVAYNIDELLETSRYGLSASLTSEVMIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDRKDNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQMMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVETGGSNVQFAINPKNGEMVVIEMN--PRVSRSS--ALASKATGFPIAKMAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 80/247 (32%), Gaps = 10/247 (4%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++   +PD       G    +  V        I  T    +  A   D+     
Sbjct: 629 KEDVLNIIDSERPDGVIVQFGGQTPLNLAVPLERAGAPILGTPPDAIDRAEDRDRFCELL 688

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            +     P   +       +     I  P V++P        + ++   Q++   +  + 
Sbjct: 689 RLLRLRQPDNGTATNVEEAVRIAEKIGYPVVVRPSYVLGGRAMEIVHDRQALEHYMATAV 748

Query: 159 SWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +    +L++++  D IE+    + D  L V    +   +       +S  ++  + P 
Sbjct: 749 KASPDHPILVDKFLEDAIEVDVDAVCDGELCVVAGIMEHIEQAG---VHSGDSACVLPPH 805

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   +  E+++        +G RG+    F        ++ LE+N +   T     P +
Sbjct: 806 TLGPAMIDEIRQATHALAFELGVRGLMNIQFAI--QGGLLYLLEVNPRASRT----VPFV 859

Query: 278 AAYAGYS 284
           +   G  
Sbjct: 860 SKATGVP 866


>gi|300764063|ref|ZP_07074058.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL N1-017]
 gi|300515053|gb|EFK42105.1| D-alanine-D-alanine ligase [Listeria monocytogenes FSL N1-017]
          Length = 51

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/35 (31%), Positives = 19/35 (54%)

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +N  PG TP S++P +    G  +  L+  +V+ A
Sbjct: 1   MNTMPGFTPYSMYPLLWQETGLPYGALIERLVDLA 35


>gi|161898980|ref|YP_201526.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae KACC10331]
 gi|188575984|ref|YP_001912913.1| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
 gi|188520436|gb|ACD58381.1| carbamoyl-phosphate synthase, large subunit [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|58427104|gb|AAW76141.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv.
           oryzae KACC10331]
          Length = 1090

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 278

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 279 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 334

Query: 291 WM 292
            +
Sbjct: 335 KL 336



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883


>gi|253751581|ref|YP_003024722.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84]
 gi|253753482|ref|YP_003026623.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7]
 gi|253755692|ref|YP_003028832.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407]
 gi|251815870|emb|CAZ51481.1| carbamoyl-phosphate synthase large chain [Streptococcus suis SC84]
 gi|251818156|emb|CAZ55953.1| carbamoyl-phosphate synthase large chain [Streptococcus suis BM407]
 gi|251819728|emb|CAR45577.1| carbamoyl-phosphate synthase large chain [Streptococcus suis P1/7]
          Length = 1059

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S+E  VS           +   F+   +     V  V+   KP        G    +   
Sbjct: 599 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 644

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
                 + I  T    L  A   D             P   +       +++   I  P 
Sbjct: 645 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 704

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D    
Sbjct: 705 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 764

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  +     P  +  ++   +          + C G+    F
Sbjct: 765 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 821

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++        ++   ++
Sbjct: 822 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|281417667|ref|ZP_06248687.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
 gi|281409069|gb|EFB39327.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum JW20]
          Length = 1072

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++   +V  ++ +                       V  ++   KPD     
Sbjct: 30  GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKIIIKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      L+   +    +   A  ++ D+   K  +   G P   S  +
Sbjct: 90  LGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTMERIGEPCIASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I+ P V++P       G  +   ++ +          +   Q+LIE+ 
Sbjct: 150 NTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLRLSRVHQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +     +                 + Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSKGNVITVCNMENIDPVGVHTGDSIVVAPSQTLTDRE-YQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISALGIEGGCNVQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 93/289 (32%), Gaps = 32/289 (11%)

Query: 26  LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G++               D              V  ++   K D A     G    
Sbjct: 584 LKQEGYETIIANNNPETVSTDFDTADRLYFEPLTPEDVENIVEKEKVDGAIVQFGGQTAI 643

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                 +   +++  T    + +A   +K            P   +I      +++ + +
Sbjct: 644 KLTKALVEMGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  V P +   + + +++        +A+   G+
Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +++   + + + +E+N +   T     P ++   G     +   +
Sbjct: 820 INIQYVY--YNNEFYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862


>gi|154148753|ref|YP_001406899.1| carbamoyl phosphate synthase large subunit [Campylobacter hominis
           ATCC BAA-381]
 gi|153804762|gb|ABS51769.1| carbamoyl-phosphate synthase, large subunit [Campylobacter hominis
           ATCC BAA-381]
          Length = 1086

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 81/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG   A  L+  G++V  I         D D +    +               K D    
Sbjct: 29  SGTQAAKTLKKLGYRVVLINSNPATIMTDPDFADATYIEPITKESILKIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++         ++        +         +   +     +P      
Sbjct: 89  TMGGQVALNVAMEVFESGEFGDVKFLGAKPEAIKKGEDRVAFKEAMLKIGMDLPKSEYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M++ + I  P +I+        G  V                 +   ++LIE+ +
Sbjct: 149 NMDEAMNAANDIGFPVMIRASYTLGGAGSGVAYNIDEFKELAQNGIEISPIHEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  K       
Sbjct: 209 LGWKEFEMEVIRDHKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQKMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATML 324



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    +  V+   KPD    ++H            L ++      +      ++ D
Sbjct: 615 FEPIDF-EHLRSVIEREKPDGV--IVHFGGQTPLKFAKRLNVMGAKIIGTSARTIDIAED 671

Query: 93  KMRSKQVVSSCGVPV--CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + +   GV      + +     ++    I  P +++P        +  +  +  +
Sbjct: 672 RKKFSEFIKHIGVKQPKNDTAISEAEAIEKAAKIGYPVLVRPSYVLGGRAMRRVYNENEL 731

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++ +D  EL    + D         +   +           
Sbjct: 732 KEYMNEAVKVSYHSPVLLDKFLIDATELDVDAISDGKDVYIGAIMEHIEEAGIHSG---D 788

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +++ + P  +  ++   V  +      ++G  G+    F       +++ +E+N +   T
Sbjct: 789 SASILPPMSLSDEMIDNVNSVTKEIALSLGVIGLMNIQFAIFE--NELYMIEVNPRASRT 846

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 847 ----VPYVSKATGIPMAKVATR 864


>gi|146320640|ref|YP_001200351.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           98HAH33]
 gi|145691446|gb|ABP91951.1| Carbamoylphosphate synthase large subunit [Streptococcus suis
           98HAH33]
          Length = 1074

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S+E  VS           +   F+   +     V  V+   KP        G    +   
Sbjct: 621 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 666

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
                 + I  T    L  A   D             P   +       +++   I  P 
Sbjct: 667 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 726

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D    
Sbjct: 727 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 786

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  +     P  +  ++   +          + C G+    F
Sbjct: 787 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 843

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++        ++   ++
Sbjct: 844 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 52  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 111

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 291 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346

Query: 292 M 292
           +
Sbjct: 347 I 347


>gi|146318446|ref|YP_001198158.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           05ZYH33]
 gi|145689252|gb|ABP89758.1| Carbamoylphosphate synthase large subunit [Streptococcus suis
           05ZYH33]
 gi|292558232|gb|ADE31233.1| Carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           GZ1]
 gi|319758016|gb|ADV69958.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           JS14]
          Length = 1081

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 85/285 (29%), Gaps = 23/285 (8%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S+E  VS           +   F+   +     V  V+   KP        G    +   
Sbjct: 621 STEFSVS-----------DKLYFEPLTL---EDVLNVIDLEKPKGVIVQFGGQTAINLAE 666

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
                 + I  T    L  A   D             P   +       +++   I  P 
Sbjct: 667 PLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAARKIGFPV 726

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     + D    
Sbjct: 727 LVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAISDGKDV 786

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
           +    +   +       +S  +     P  +  ++   +          + C G+    F
Sbjct: 787 LIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIGMMNIQF 843

Query: 249 LFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +       V+ +E+N +   T     P ++        ++   ++
Sbjct: 844 II--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 52  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDAFLPT 111

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 291 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346

Query: 292 M 292
           +
Sbjct: 347 I 347


>gi|125973466|ref|YP_001037376.1| carbamoyl phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|256005363|ref|ZP_05430328.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|125713691|gb|ABN52183.1| carbamoyl-phosphate synthase large subunit [Clostridium
           thermocellum ATCC 27405]
 gi|255990682|gb|EEU00799.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 2360]
 gi|316940297|gb|ADU74331.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           thermocellum DSM 1313]
          Length = 1072

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++   +V  ++ +                       V  ++   KPD     
Sbjct: 30  GTQACRALKEENIEVVLVNSNPATIMTDTNIADRVYIEPLTVEVVKKIIIKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      L+   +    +   A  ++ D+   K  +   G P   S  +
Sbjct: 90  LGGQTGLNLAMELAESGFLKEHGVKLLGTATEAIKMAEDRQAFKDTMERIGEPCIASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I+ P V++P       G  +   ++ +          +   Q+LIE+ 
Sbjct: 150 NTVEDALDFAKEIAYPVVVRPAYTLGGTGGGIAYNEEELKEIASNGLRLSRVHQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +     +                 + Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSKGNVITVCNMENIDPVGVHTGDSIVVAPSQTLTDRE-YQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISALGIEGGCNVQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/289 (12%), Positives = 94/289 (32%), Gaps = 32/289 (11%)

Query: 26  LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G++               D              V  ++   K D A     G    
Sbjct: 584 LKQEGYETIIANNNPETVSTDFDTADRLYFEPLTPEDVENIVEKEKVDGAIVQFGGQTAI 643

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                 +   +++  T    + +A   +K            P   +I      +++ + +
Sbjct: 644 KLTKALVEMGVKVFGTEPKYIDAAEDREKFDRILEELGIPRPKGKTIFTLDEALEAANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   D+ I   +   +       +LI++Y+ G E+    + D
Sbjct: 704 GYPVLVRPSYVLGGQGMEIAYNDKDIVEFMEIINRVKQEHPILIDKYMMGKEIEVDAISD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  V P +   + + +++        +A+   G+
Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPTQTIGEKLKEKIVDYTQKLAKALRVVGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +++   + +++ +E+N +   T     P ++   G     +   +
Sbjct: 820 INIQYVY--YNNELYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862


>gi|332528715|ref|ZP_08404692.1| biotin carboxylation domain-containing protein [Hylemonella
           gracilis ATCC 19624]
 gi|332041781|gb|EGI78130.1| biotin carboxylation domain-containing protein [Hylemonella
           gracilis ATCC 19624]
          Length = 1217

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 63/182 (34%), Gaps = 16/182 (8%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K   GG  +G+ V      +             +      +++        +
Sbjct: 149 KVGYPIMLKSTAGGGGIGMRVCHSASELREAYEAVRRLGQNNFSDSGVFIEQYIERARHL 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
                      V         ++  +       PA    + + +E+   A    +A+  R
Sbjct: 209 EVQIFGDGRGEVIALGVRDCSVQRRNQKVLEETPAPNLPEGMAEELCAAAIRLGKAVNYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                +F++D  +R+ ++LE+N +     G+T      ++    G    +L+ WM+E A+
Sbjct: 269 SAGTVEFVYDDQARRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELAA 317

Query: 298 CL 299
             
Sbjct: 318 GD 319


>gi|319760267|ref|YP_004124205.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia
           vafer str. BVAF]
 gi|318038981|gb|ADV33531.1| carbamoyl-phosphate synthase large chain [Candidatus Blochmannia
           vafer str. BVAF]
          Length = 1088

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 104/303 (34%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++   +PD   +
Sbjct: 29  SGTQACKALREEGYRLILVNSNPATIMTDPDMVDSTYIEAIQWEIVYKIIQKERPDALLS 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        D   + IL+   +      I +   + ++ + ++ +    +    S  
Sbjct: 89  TMGGQTALNCTLDLEKKGILKKFNVETIGVTIDSIHKAENRQKFQESIKRVKLETPKSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M   + I  P +++P       G  +    +       +    +   +LLI++
Sbjct: 149 ARNINEAMSILNNIGLPCIVRPSFTLGGSGGGIAYTIEEFEHICQRGLFLSPNHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +    +     L    I V   +       ++  + T      +    Y+ ++  
Sbjct: 209 SLIGWKEF-EMEVMCDLKDNCIVVCSIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           AFL  +AIG + G +   F  +P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 268 AFLVLRAIGIKSGGANVQFAVNPNNGRILVIEMN--PRVSRSS--ALASKATGFPIAKIS 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326



 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 97/303 (32%), Gaps = 34/303 (11%)

Query: 22  CASA--LEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
             SA  L + G+ V  +           D+             V  ++   K        
Sbjct: 586 VHSAITLREEGYNVIIVNCNPETVSTDYDISDILYFEPVTLEDVLEIIRINKLKGVIVQY 645

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              + I  T + I+  A + ++ +S         P   ++   +  +
Sbjct: 646 GGQTPLKLATFIEKYGIPILGTSANIIDQAENRERFKSAIKYLKLKQPNSVTVSSIKLAL 705

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            +   I  P V++P        + ++   + +   L  +   ++   +L++ +++  IE+
Sbjct: 706 KNAKEIGYPIVVRPSYVLGGRAMQIVYNKKELLYYLKDAIQVSNNAPVLLDHFLENAIEV 765

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++ D         +   +   Y   +S  ++  +    +  +I   +++        
Sbjct: 766 DVDLVCDGIQVFIGGIM---EHIEYAGIHSGDSACSLPAYTLDNNIQNIIRQQVEKIALY 822

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW-MVEDA 296
              +G+            +V+ +EIN +   T     P ++     +  ++    M+  +
Sbjct: 823 FNIKGLMNVQLAI--KKNEVYIIEINPRAART----VPFVSKAINVALAKIGTRVMLGQS 876

Query: 297 SCL 299
            C 
Sbjct: 877 LCD 879


>gi|194398207|ref|YP_002037878.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae G54]
 gi|226700937|sp|B5E512|CARB_STRP4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|194357874|gb|ACF56322.1| carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Streptococcus pneumoniae G54]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|168575730|ref|ZP_02721645.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae MLV-016]
 gi|183578166|gb|EDT98694.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae MLV-016]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|113460694|ref|YP_718760.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus
           129PT]
 gi|123327173|sp|Q0I203|PURT_HAES1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|112822737|gb|ABI24826.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Haemophilus somnus 129PT]
          Length = 393

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 85/308 (27%), Gaps = 38/308 (12%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                   +D + +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRSYTISMLDGNALKALIEKEKPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATSTLVELEQAGFNVVPTAKATQLTMNREGIRRLAAEKLKLPT-SNYQFVDNFDDFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P VIKP+   S  G  ++K    +        +   G        V+G    
Sbjct: 143 SAVENLGIPCVIKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  + +    + Q +A      +
Sbjct: 201 D--YEITLLTVRHAEGTSFLAPIGHRQEKGDYRESWQPQAMSVQALAKAQHIAEKITTEL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289
           G RGI   +        +V + E++ +P   GM       +S F   A    G    E+ 
Sbjct: 259 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 315

Query: 290 LWMVEDAS 297
             ++  A+
Sbjct: 316 -NLISPAA 322


>gi|315612922|ref|ZP_07887833.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|315315032|gb|EFU63073.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           sanguinis ATCC 49296]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEKDLRSYMGTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|270292993|ref|ZP_06199204.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M143]
 gi|270278972|gb|EFA24818.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M143]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVIRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|296273931|ref|YP_003656562.1| D-alanine--D-alanine ligase domain-containing protein [Arcobacter
           nitrofigilis DSM 7299]
 gi|296098105|gb|ADG94055.1| D-alanine--D-alanine ligase domain protein [Arcobacter nitrofigilis
           DSM 7299]
          Length = 330

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 48/270 (17%), Positives = 98/270 (36%), Gaps = 15/270 (5%)

Query: 40  RSVGLVLAHLKPDLAFNV---LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             +  VL   +PDL       +      + L+    +   I YT           +K+ +
Sbjct: 47  EDLEKVLKR-RPDLVILAVKYIELRNKSNILLCDYFKKHNINYTGCEKDVLKYDSNKVLA 105

Query: 97  KQVVSSCGVPV-CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLD 153
           K  +   G+      I + +   + +  +  P  +KP+   +S GI       +      
Sbjct: 106 KSFLRRKGINTADYFIAMPKEYKEKEFPLEFPVFLKPVNTSNSYGIDEFSLANNFKEYES 165

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE-----LKYSS 208
            + S      + +L+E+Y+DG E T  ++     ++   A+      S        +   
Sbjct: 166 KILSLYTQFKEPILVEKYLDGREFTVAIIKKDEKELLVSAIEILAPLSNSGNNILSEKVK 225

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             ++  L       +  +++++A  +   +  R   R D   + +  + F+LE N+ PGM
Sbjct: 226 RENSEKLLIIEDTLLKNKIEKIAQDSFMYLDIRDYGRIDIKMNKV-GECFFLEANLIPGM 284

Query: 269 TP-VSIFPEMAAYA-GYSFRELLLWMVEDA 296
                 FP         ++  +L  MVE A
Sbjct: 285 NERTDYFPRAFKLTQDLNYDNILEMMVESA 314


>gi|289668839|ref|ZP_06489914.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. musacearum NCPPB4381]
          Length = 1080

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  ++A  +PD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIIAKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIDIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       +   +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +  +   E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPETQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGIPLAKIAAR 873


>gi|225856936|ref|YP_002738447.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae P1031]
 gi|254813663|sp|C1CL09|CARB_STRZP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225725308|gb|ACO21160.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae P1031]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|148985175|ref|ZP_01818414.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|147922620|gb|EDK73738.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP3-BS71]
 gi|301800188|emb|CBW32796.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           OXC141]
          Length = 1058

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELSVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|294085796|ref|YP_003552556.1| carbamoylphosphate synthase large subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292665371|gb|ADE40472.1| Carbamoylphosphate synthase large subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 1093

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +         D D             +V  ++   +PD    
Sbjct: 29  SGAQACKALKSDGYRIILVNSNPATIMTDPDMADATYIEPITPATVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+  ++    +   +  ++ D+   +  +   G+    +  
Sbjct: 89  TMGGQTALNTALSLYHDGTLDKYDVEMIGARTKSIEMAEDRELFRLAMQRIGLECARART 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN F   +  L     P +I+P       G  +          +      +   ++LIE+
Sbjct: 149 VNNFEDAAAALDFVGLPAIIRPSFTLGGEGGGIAYNKAEFEEIVRNGLRLSPVSEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQNLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
             +  +     G S   F   P + +V  +E+N  P ++  S        FP     A  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVCPNTGRVIVIEMN--PRVSRSSALASKATGFPIAKVAAKL 326

Query: 280 YAGYSFRELLLWM 292
            AGY+  EL   +
Sbjct: 327 AAGYTLDELANDI 339



 Score = 43.7 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 96/326 (29%), Gaps = 51/326 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   I         D D S 
Sbjct: 576 VVILGGGPN-------RIGQGIEFDYCCVHACYALSEAGYETIMINCNPETVSTDYDTSD 628

Query: 43  GLVLAHLKPDLAFNV----------------LHGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +   +V                L G              + I  T    + 
Sbjct: 629 RLYFEPLTDEDVISVIKRESENGTLAGVIVQLGGQTPLKIAAALETAGIPILGTSPDAID 688

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P                 +  P VI+P        + V+  
Sbjct: 689 LAEDRERFQQLLQKLDLLQPENGIAHSADEARAIVDRVGLPVVIRPSYVLGGRAMEVVHH 748

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +  + +LI++++D  +E+    + D +       +   +       
Sbjct: 749 LDDLERYMRDAVIVSGDNPVLIDRFLDHAVEVDVDALCDGTDVYIAGIMEHIEEAGIHSG 808

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +  DI  E++R       A+G  G+    F        ++ LE+N +
Sbjct: 809 ---DSACSLPPQNLSDDILAELRRQTTALAHALGVVGLMNIQFAIKGTD--IYLLEVNPR 863

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P +A   G    ++   
Sbjct: 864 GSRT----VPFVAKTTGVPIAKIASR 885


>gi|291533192|emb|CBL06305.1| D-ala D-ala ligase N-terminus [Megamonas hypermegale ART12/1]
          Length = 79

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-VDRSVGLVLAH 48
          + VLMGG SSE E+S  +G A  +AL++ G+    ++ V +++   +  
Sbjct: 6  IVVLMGGPSSEAEISRLTGTAILNALQEKGYNAVGMEFVPKTLVEDIKK 54


>gi|146418409|ref|XP_001485170.1| hypothetical protein PGUG_02899 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 404

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 53/278 (19%), Positives = 97/278 (34%), Gaps = 25/278 (8%)

Query: 1   MAVLMGGISSEREVSLSSGKACASA-----LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF 55
           +A+     S+E   SL       SA     L   G +   ID+D  V + + +LK D+  
Sbjct: 34  IAI----YSAEDAESL----HVLSADEAMLLPGVGAQAY-IDIDHVVSVAI-NLKADVVV 83

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---IL 112
              +G   E     A LE   I +      +      K  ++ +  S  VPV P    I 
Sbjct: 84  PG-YGFLSESPQFAAALEKKGIVFAGPTGKSIDTFGLKHSARSLAESNDVPVVPGSGLIT 142

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLL 167
                    + I  P ++K   GG  +G+ V  ++  +     +  S     +N+    L
Sbjct: 143 DIAEAQLIANRIGYPVMLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFL 202

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +    G  +   V G+    V      +        K      +  +     L + K++
Sbjct: 203 EKYVECGRHIEVQVFGNGQGYVRAFGERECSIQRRHQKVIEEAPSPFVENGRTL-LRKQL 261

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A     ++  +     +FL D  +   ++LE+N +
Sbjct: 262 VTCAAHLAASVKYKSAGTVEFLVDDETGSFYFLEMNTR 299


>gi|16127130|ref|NP_421694.1| carbamoyl phosphate synthase large subunit [Caulobacter crescentus
           CB15]
 gi|221235930|ref|YP_002518367.1| carbamoyl phosphate synthase large subunit [Caulobacter crescentus
           NA1000]
 gi|22095525|sp|Q9A4D6|CARB_CAUCR RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|13424518|gb|AAK24862.1| carbamoyl-phosphate synthase, large subunit [Caulobacter crescentus
           CB15]
 gi|220965103|gb|ACL96459.1| carbamoyl-phosphate synthase large chain [Caulobacter crescentus
           NA1000]
          Length = 1099

 Score = 61.0 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L    +    +       + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALEADGTLAKFGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSRA 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P +I+P    +  G  +    +     + +    +   ++L+E+
Sbjct: 149 CHTLDEAMEGLEFVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 41.4 bits (95), Expect = 0.17,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 101/296 (34%), Gaps = 34/296 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--------- 66
           AL+  G +   +         D D S  L    L  +    +LH    +           
Sbjct: 596 ALDQIGVESIMVNCNPETVSTDYDTSDRLYFEPLTAEDVLELLHVEMSKGTLAGVIVQFG 655

Query: 67  -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 +   LE   +P   +   A  L+ D+ R +Q+++   +    + +   +     
Sbjct: 656 GQTPLKLAHALEEAGVPILGTSPDAIDLAEDRERFQQLLNGLNIAQPENAIARSWDEARA 715

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P+V++P       G+ +I+  +++   +  +   +    +L++ Y+       
Sbjct: 716 EGDKIGFPFVMRPSYVLGGRGMEIIRDHEAMERYIAGAGEISLEHPILLDHYLS-RATEV 774

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V          +A    +       +S  ++  + P  +  +  +E++R       A+ 
Sbjct: 775 DVDALCDGKDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLKAETVEELKRQTVQMALALN 833

Query: 240 CRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F  +     + +++ LE+N +   T     P +A   G     +   +
Sbjct: 834 VRGLMNVQFAIEEPHSDNPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAAKI 885


>gi|296273014|ref|YP_003655645.1| carbamoyl-phosphate synthase large subunit [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097188|gb|ADG93138.1| carbamoyl-phosphate synthase, large subunit [Arcobacter
           nitrofigilis DSM 7299]
          Length = 1079

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 77/300 (25%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+                    +    +  ++     D    
Sbjct: 29  SGTQATKTLKELGYRVVLINSNPATIMTDPEFADRTYIEPITEDMIAKIIKKENIDAILP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+ +     H   +             +     +P   +  
Sbjct: 89  TMGGQTALNVATTMYDKGMLDGVAFLGAHPDAIKKGEDRHLFNEAMIKIGMDLPKSANAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P + +     +  G  V    +            +  +++ I + +
Sbjct: 149 SVEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKKLAEIGIEASPINEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRKDNCIIVCSIENLDPMGVHTGDSVTIAPALTLTDKEYQDMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 92/262 (35%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD    ++H        +   L         +      L+ D
Sbjct: 609 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTAAGAKIIGTTAEVIDLAED 665

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +  + V   G+      + +     ++    I  P +++P       G+ ++     +
Sbjct: 666 RKKFSKFVEDAGLLQPENGTAVEVTEAIEIAERIGYPVLVRPSFVLGGRGMKIVYSTNEL 725

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++ S ++   +LI++++D  IEL    + D         +   +       +S  
Sbjct: 726 RQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCICDGKEVYIGGIMQHIEEAG---VHSGD 782

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I  ++ KE++         +G  G+  + +       +++ +E+N +   T
Sbjct: 783 SACSLPPVSISDELIKELETKTKNMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 840

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 841 ----VPFVSKATGMPLAKVATR 858


>gi|183602593|ref|ZP_02963958.1| CarB [Bifidobacterium animalis subsp. lactis HN019]
 gi|219683635|ref|YP_002470018.1| CarB [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190667|ref|YP_002968061.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|241196073|ref|YP_002969628.1| carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|254813559|sp|B8DTW3|CARB_BIFA0 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183218234|gb|EDT88880.1| CarB [Bifidobacterium animalis subsp. lactis HN019]
 gi|219621285|gb|ACL29442.1| CarB [Bifidobacterium animalis subsp. lactis AD011]
 gi|240249059|gb|ACS45999.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis Bl-04]
 gi|240250627|gb|ACS47566.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis DSM 10140]
 gi|289178405|gb|ADC85651.1| Carbamoyl-phosphate synthase large chain [Bifidobacterium animalis
           subsp. lactis BB-12]
 gi|295793656|gb|ADG33191.1| Carbamoylphosphate synthase large subunit [Bifidobacterium animalis
           subsp. lactis V9]
          Length = 1136

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPEMADATYIDPISTPILEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V      +L+   +    + + A     D+   K+VV   G     S  
Sbjct: 89  TLGGQTALNAAVALGEAGVLKKYNVELIGASLEAIDRGEDRESFKKVVKEAGAESARSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                           P V++P      LG  +    + +         ++  D++LIE+
Sbjct: 149 AHTLEEVDAIAERFGFPLVVRPSFTMGGLGSGIAHDTEELHRIAGAGIHYSPTDEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +     D   +  P  +     +      +   +      +  K     
Sbjct: 209 GIEGWKEYELELMRDRNDNVVVVCPIENVDPVGVHTGDSITVAPVFTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIRGVGVDTGGCNIQFAIHPDTGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|319745061|gb|EFV97388.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPAIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|76788218|ref|YP_329753.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae A909]
 gi|123601807|sp|Q3K150|CARB_STRA1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|76563275|gb|ABA45859.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae A909]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|25011128|ref|NP_735523.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae NEM316]
 gi|60389788|sp|Q8E5F5|CARB_STRA3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|23095527|emb|CAD46736.1| Unknown [Streptococcus agalactiae NEM316]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|77414495|ref|ZP_00790643.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 515]
 gi|77159445|gb|EAO70608.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 515]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|77410551|ref|ZP_00786912.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae CJB111]
 gi|77163499|gb|EAO74449.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae CJB111]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|77406311|ref|ZP_00783376.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
 gi|77175087|gb|EAO77891.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 34/280 (12%), Positives = 88/280 (31%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+   E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLISKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P      I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERAG---VHSGDSMAVYPPQTXSXTIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|22537201|ref|NP_688052.1| carbamoyl phosphate synthase large subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76798077|ref|ZP_00780333.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 18RS21]
 gi|60389784|sp|Q8DZQ7|CARB_STRA5 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|22534066|gb|AAM99924.1|AE014239_16 carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 2603V/R]
 gi|76586582|gb|EAO63084.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae 18RS21]
          Length = 1060

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     +L++ G++V  ++        D+ +                +L   +PD    
Sbjct: 29  SGTQACLSLKEEGYQVVLVNSNPATIMTDKDIADKVYIEPITLEFVTRILRKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  +            +E+  T    +  A   D  +      +  +P    
Sbjct: 89  TLGGQTGLNMAMALSKNGILEELNVELLGTKLSAIDKAEDRDLFKQLMEELNQPIPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    + +     +    +   Q LIE+
Sbjct: 149 VNSVEEAIQFAEQIGYPLIVRPAFTLGGTGGGMCDNQEQLVDITTKGLKLSPVTQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +     + ++  
Sbjct: 209 SIAG-FKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPAQTLSDVENQLLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   +L  
Sbjct: 268 SLDIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 90/280 (32%), Gaps = 31/280 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+ ++GF+   ++ +                       V  V+   KP+       G  
Sbjct: 579 KAIRESGFEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIDLEKPEGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A +  +  +     +   P   +       +++  
Sbjct: 639 AINLAKDLNKAGVKILGTQLEDLDRAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 KIGYPVLVRPSYVLGGRAMKIVENEEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGQNILIPGIMEHIERSG---VHSGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+     +KV+ +E+N       P ++ V+  P  
Sbjct: 816 MMNIQFVI--KDQKVYVIEVNPRASRTLPFLSKVTHIPMA 853


>gi|300853641|ref|YP_003778625.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
 gi|300433756|gb|ADK13523.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
          Length = 1068

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 88/292 (30%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C   L     +   +           D+             V  ++   KP        G
Sbjct: 580 CIKTLRKLNIETIIVNNNPETVSTDFDISDKLYFEPITEEDVLSIIDKEKPYGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K        +   P    +      ++ 
Sbjct: 640 ETAIKLAEFLKEKNIVTLGTTADQIDEAEDREKFDDLLERLNISRPKGKGVWSVEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 ARRLEFPVLVRPSYVLGGQGMEITYDEKELTYYLSMAFKKDRKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            + D    +     P    +       S +S  + P++   D  K+            IG
Sbjct: 760 AICDGEDVLI----PGIMEHLERAGIHSGDSITMYPSQNISDEMKKKILDYTEKLATGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    F+       ++ +E+N +   T     P ++  +G    ++   
Sbjct: 816 IKGMINIQFI--EYKGNLYVIEVNPRASRT----VPYISKVSGVPIVDIATR 861



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 97/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +V  I+ +                       V  V+   +PD    
Sbjct: 29  SGTQACESLREEGLEVVLINSNPATIMTDREVADKVYIEPLTVEFVEKVIKKERPDSLLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + ILE   +    + I A     D+   R      +  V     
Sbjct: 89  GMGGQTALNLTVELYEKKILEKYNVNIIGTSIEAIKKGEDRELFRDTMNKINQPVVESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I          + I  P +++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 ITDMESGKKFANRIGYPVIVRPAYTLGGTGGGIAENEEQLETILESGLELSSIGQVLLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SIKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDIINAVGIEGGCNVQLALNPKSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +++A   +
Sbjct: 324 KIALGYGLDEIKNAVTKK 341


>gi|261415243|ref|YP_003248926.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371699|gb|ACX74444.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302328156|gb|ADL27357.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1072

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 49/297 (16%), Positives = 96/297 (32%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+K+  ++ + +                     +  ++   +P     
Sbjct: 28  SGTQACKALREQGYKIVLVNSNPATIMTDPVMADATYIEPLNVARLTQIIEKERPQALLP 87

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G           +L+   +      + A     D+   K+ +   G+    S +
Sbjct: 88  NLGGQTGLNLASALSKAGVLDKYGVKVIGVNLDAIERGEDREIFKETMQKLGIDTPRSGI 147

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           I  P V++P       G       + +          +   Q LIE+
Sbjct: 148 CHSVEEAEKIVAEIGYPVVVRPAYTMGGAGGGFCYNVEELRTICSNGLELSMTHQCLIEE 207

Query: 171 YVDGIEL-TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G E     V+ D+   +  I   ++          S  +   L   I   + +E++ 
Sbjct: 208 SILGWEELEVEVVRDSKNQMIAICFIENIDPVGVHTGDSFCAAPFL--TIDKKLEEELKE 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            AF   ++IG  G +   F  DP + +V  +EIN +   T  S     +   G+   
Sbjct: 266 KAFKIVESIGVIGGTNVQFAHDPKTGRVVIIEINPR---TSRSS-ALASKATGFPIA 318



 Score = 36.8 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 93/295 (31%), Gaps = 32/295 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNFGED 65
           AL + G++   +         D D S  L    +  +    + H                
Sbjct: 580 ALREMGYETIMVNCNPETVSTDYDTSDKLYFEPVSLEDVLQIYHKEKPAGVIVQFGGQTP 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             +   L    +    + I +  ++ D+   ++++   G+P+  S +          +  
Sbjct: 640 LNIARALSDEGVKILGTSIDSIDIAEDRDLFRKMMDQLGIPMPESGMATNIDEALACVKQ 699

Query: 126 ---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P +I+P       G+ VI  +  +   + ++        LLI++++          
Sbjct: 700 IGGYPVMIRPSFVLGGRGMEVIYDEAMLREYVAKAVGVTPDRPLLIDRFL---HNALECE 756

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCR 241
            DA  D   + +P    +       S +S  ++P           ++       +A+   
Sbjct: 757 ADALSDGEHVYIPSVMEHVELAGVHSGDSACIIPPVTITKENLATIKDYTRKIAEALHVC 816

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           G+    +       KVF LE N +   T     P ++         L   ++  A
Sbjct: 817 GLMNMQYAI--EDGKVFVLEANPRASRT----VPLVSKVCNTQMARLATRLMLGA 865


>gi|15669568|ref|NP_248381.1| carbamoyl-phosphate synthase subunit CarB1 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|22095496|sp|Q58773|CARB1_METJA RecName: Full=Carbamoyl-phosphate synthase large chain, N-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|2826402|gb|AAB99385.1| carbamoyl-phosphate synthase, medium subunit (carB1)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 482

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ + +                     V  ++   +PD    
Sbjct: 26  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 85

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       + IL+   I    S I    ++ D+          +  V  C +
Sbjct: 86  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 146 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 205

Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G +            +  +            +  +   ++    LP +    +    
Sbjct: 206 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A    + +G  G     F  +    +   +E+N  P ++  S     +   GY 
Sbjct: 264 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 314


>gi|329117301|ref|ZP_08246018.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326907706|gb|EGE54620.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 1058

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 87/290 (30%), Gaps = 30/290 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQEAGYEAIIMNSNPETVSTDFSISDKLYFEPLAFEDVMNVIDLEKPKGVLVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +   +     + I  T    L  A + D         +   P   +       +    
Sbjct: 639 SINLAEKLANAGVTILGTQVEDLDRAENRDLFEKVLKELNIPQPPGQTATNEDEAIQVAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  Q +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENKQDLQSYMRTAVKASPEHPVLVDSYIIGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P K+   +  ++          + C G
Sbjct: 759 SDGKHVLIPGIMEHIERAG---VHSGDSMAVYPPQKLSPIVIDKIVDYTEKLAIGLKCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    F+       V+ +E+N +   T     P ++   G     L   +
Sbjct: 816 MMNIQFVI--KGETVYVIEVNPRASRT----VPFLSKVTGIPMANLATKL 859



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACLALKEEGYQVVLVNSNPATIMTDKDIADKVYIEPLTLEFVSRIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q           +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMQLSKSGILKELDVELLGTKLSSIDQAEDRDLFKQLMEELGQPIPESKIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVDQAVDFAAKIGFPIIVRPAFTLGGTGGGMCANEEQLREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 + V   + +     ++  +        +     + ++  +
Sbjct: 210 IAG-YKEIEYEVIRDGADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIENQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPKSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|295401640|ref|ZP_06811607.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294976260|gb|EFG51871.1| carbamoyl-phosphate synthase, large subunit [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 1041

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 52/302 (17%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      SV  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDSVEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHETGVLEKYGVKLLGTPIEAIKRGEDREAFRALMYELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 ITNVDEAVAFAEKIGFPIIIRPAYTLGGTGGGIAETMEQFIALVEKGLAESPITQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-YKEIEYEVMRDNTNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRAS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AIKIISALGIIGGCNIQFALDPFSKRYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 95/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   ++ +                       V  V+   +      
Sbjct: 577 SVHSVY-ALQKEGYETVLMNNNPETVSTDFAVADRLYFEPLTLEEVLNVIEAEQIKKVIV 635

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 636 QFGGQTAINLVKGLEEANVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGMMANNEEE 695

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            + +   I  P +++P       G+ ++K +Q +   L Q         LLI+ Y+DG E
Sbjct: 696 LVLNAKKIGYPVLLRPSYVIGGRGMFIVKNEQQLRALLEQGMIAY---PLLIDAYLDGKE 752

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAH 235
               V  D +  +    +P    +  +    S +S  VLP   I  +   ++   A    
Sbjct: 753 AEVDVAADGNDML----LPTIIEHVEKAGVHSGDSYAVLPAQTIANEEQSKIITYARKIV 808

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +  +GI    ++    + +V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 809 KKLQFKGIMNIQYVI--ANGQVYVLEVNPRASRT----VPVVSKATGIPLAQIATKLL 860


>gi|2127793|pir||A64472 carbamoyl-phosphate synthase, large chain (EC 6.3.-.-) -
           Methanococcus jannaschii
          Length = 487

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 91/297 (30%), Gaps = 38/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ + +                     V  ++   +PD    
Sbjct: 31  SGSQACKALKEEGIYTILVNSNPATIQTDTDMADKVYLEPLHPTIVEKIIEKERPDAILP 90

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       + IL+   I    S I    ++ D+          +  V  C +
Sbjct: 91  TMGGQTGLNLALELHRRGILDKYGIKLLGSNIRTIEIAEDRELFAEAMAEINEPVTKCKA 150

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +    + +     +   ++  +Q+LI++
Sbjct: 151 VNSVDEAVEFAEEIGYPVIVRPAFTLGGTGGGIAHNKEELIDITSKGLKYSIINQVLIDE 210

Query: 171 YVDGIELT---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            V G +            +  +            +  +   ++    LP +    +    
Sbjct: 211 SVLGWKEFELEVMRDRKDTCIIVCGMENIDPMGIHTGESIVVSPIQTLPDEFYQKLRN-- 268

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              A    + +G  G     F  +    +   +E+N  P ++  S     +   GY 
Sbjct: 269 --AAIKIIRHLGIEGGCNIQFAVNKEMTEYRVIEVN--PRVSRSS--ALASKATGYP 319


>gi|325678886|ref|ZP_08158484.1| diaminopimelate epimerase [Ruminococcus albus 8]
 gi|324109390|gb|EGC03608.1| diaminopimelate epimerase [Ruminococcus albus 8]
          Length = 1351

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G+ V  ++                      D  V  ++   KP        G
Sbjct: 577 CVWALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTDEDVMNIIRVEKPAGVVVAFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         ++I  T    + +A   ++            P   +++     ++ 
Sbjct: 637 QTAIKLTKHLNENGVKILGTPPDSIDAAEDRERFDELLEELHIKRPEGFTVMTCEEALEV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        +I+   +  I   +         + +LI++Y+ GIEL   
Sbjct: 697 ADRIGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +           +        +   +  +V   +     ++  
Sbjct: 757 AICDGEDILIPGIMEHIERTGIHSG---DSIAVYPAWNVSDRLIDKVVDCSKRLALSLKT 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G+    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 814 KGLVNIQYLI--YEDELYVIEVNPRSSRT----IPYISKVTGVPMVDLATK 858



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 96/303 (31%), Gaps = 34/303 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ +                      +V  V+   +PD   + 
Sbjct: 30  GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRVIIKERPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G    +Q      LE   +    +       + D+   K  + S G P  PS +V
Sbjct: 90  LGGQTGLTLSMQLAKEGFLEKYNVKLLGANPETIDKAEDRQLFKDTMESIGQPCIPSKVV 149

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           N             I  P +I+P       G  ++  ++ +          +   Q+L+E
Sbjct: 150 NTVEDAVAFANEEGIGYPLIIRPAFTLGGTGGGIVNNEEELIEITRNGLYLSPITQVLVE 209

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S           +F      ++  +        +    Y+ ++ 
Sbjct: 210 KCIAGWKEIEFEVMRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRS 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +   G     F  +P + +   +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 AALKIIDTLKVEGGCNCQFALNPETFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AQI 327


>gi|307611502|emb|CBX01176.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila
           130b]
          Length = 1067

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +L    +    +   A   + D+ + +Q++   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL    AG++   +         D D              V  ++A  +P+      
Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAIEQPEGVIVHY 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T S  +  A   ++ +          P   ++      +
Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +  + I  P V++P        + ++ +++ +   L  +   ++   +L++++  D IE+
Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +           ++  + P  + + + +++          
Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F        ++ LE+N +   T     P ++   G    ++
Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861


>gi|52842831|ref|YP_096630.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629942|gb|AAU28683.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 1067

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +L    +    +   A   + D+ + +Q++   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL    AG++   +         D D              V  ++A  +P+      
Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T S  +  A   ++ +          P   ++      +
Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +  + I  P V++P        + ++ +++ +   L  +   ++   +L++++  D IE+
Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +           ++  + P  + + + +++          
Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F        ++ LE+N +   T     P ++   G    ++
Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861


>gi|54295464|ref|YP_127879.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila
           str. Lens]
 gi|53755296|emb|CAH16790.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila
           str. Lens]
          Length = 1067

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +L    +    +   A   + D+ + +Q++   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTHELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL    AG++   +         D D              V  ++A  +P+      
Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAIEQPEGVIVHY 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T S  +  A   ++ +          P   ++      +
Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +  + I  P V++P        + ++ +++ +   L  +   ++   +L++++  D IE+
Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +           ++  + P  + + + +++          
Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F        ++ LE+N +   T     P ++   G    ++
Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861


>gi|328472010|gb|EGF42887.1| carbamoyl phosphate synthase large subunit [Vibrio parahaemolyticus
           10329]
          Length = 1090

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIQWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++    L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALDLEKHGVLAEFGVEMIGATADAIDKAEDRSRFDKAMKSIGLECPRADT 148

Query: 115 RFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ----- 165
             TM+  +     +  P +I+P       G  +    +        + +    ++     
Sbjct: 149 AKTMEEAYKVLDMVGFPCIIRPSFTMGGTGGGIAYNKEEFEEIWGIAYNKEEFEEICRRG 208

Query: 166 -LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP------AK 218
             L       I+ +     +  ++V                +  +               
Sbjct: 209 LDLSPTNELLIDESLIGWKEYEMEVVRDKADNCIIVCSIENFDPMGIHTGDSITVAPAQT 268

Query: 219 IPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +    Y+ ++  +    + IG   G S   F  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQLMRNASLAVLREIGVETGGSNVQFGINPKDGRMVIIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  +    KP        G   
Sbjct: 600 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLSIARVEKPKGVIVQYGGQTP 659

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ ++         P   ++      ++    
Sbjct: 660 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQAAVERLGLLQPQNATVTAMEQAVEKSRE 719

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D       V  
Sbjct: 720 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDD---ATEVDI 776

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I  +++         +G RG
Sbjct: 777 DAICDGERVVIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 836

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 837 LMNTQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 879


>gi|288930712|ref|YP_003434772.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus
           DSM 10642]
 gi|288892960|gb|ADC64497.1| carbamoyl-phosphate synthase, large subunit [Ferroglobus placidus
           DSM 10642]
          Length = 1081

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++    PD    
Sbjct: 29  SGSQACKALREEGYEVVLVNSNPATIMTDPEMADKTYIEPLTPEVVAKIIERETPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +L+   +    + + A   + D+   K+ + + G+ V  S +
Sbjct: 89  TLGGQTALNIAVKLHEMGVLDKYGVELIGANVDAIKKAEDRDLFKKAMENIGLEVPRSEI 148

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  +    + +   + +    +   Q+LIE+
Sbjct: 149 AESVSDALTIAEELGYPVVVRPAFTLGGTGGGIAYNREELKEIVRKGLELSMIHQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVIGWKEFELEVMRDKADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDYEYQRLRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 269 IAIIREIGVETGGSNIQFAVHPSSDRFLAIEMN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 32/291 (10%)

Query: 20  KACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVL 58
            A  S L++ G++   ++                         V  +  + KP+      
Sbjct: 585 HAVYS-LKEEGYETIMVNCNPETVSTDYDTSDRLYFEPITHEDVMNIYENEKPEGVLVQF 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +   Q      +I  T    +  A    +            P            
Sbjct: 644 GGQTPLNIAKQLEESGAKILGTSVDSIDIAEDRKRFAEICRKLGIPQPENGIAFSVEEAK 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +    I  P +++P        + ++  ++++   + ++   +    +LI+++  D IE+
Sbjct: 704 EVAKKIGYPVLVRPSYVLGGRAMEIVYDEETLERYIREALEVSPEKPILIDKFLEDAIEV 763

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +  ++  ++          
Sbjct: 764 EVDAVCDGEEVLIGGIMEHIEEAG---VHSGDSACVLPPQSLSKEVIDKIIDYTRKLALE 820

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   G+    +       +V+ LE N +   T     P ++   G    ++
Sbjct: 821 LKVIGLINVQYAV--KDNEVYILEANPRASRT----VPFVSKATGIPLAKI 865


>gi|189499508|ref|YP_001958978.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           phaeobacteroides BS1]
 gi|189494949|gb|ACE03497.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           phaeobacteroides BS1]
          Length = 495

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEEGYRVVLVNSNPATIMTDIEFADSTYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      +LE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGVLERNGVELIGAKLRAIRKAENREFFSDAMKKLGLDMAKGFF 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEDIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +                   
Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQLLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIREIGVETGGSNIQFAINPEDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|189346010|ref|YP_001942539.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
 gi|189340157|gb|ACD89560.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
          Length = 495

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIEMADATYIEPITPEYVRKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVTLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       +    I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAREALEEIGLPIVIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPISEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +                   
Sbjct: 209 CLVGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQVLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIREIGVETGGSNIQFAINPENGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|256847340|ref|ZP_05552786.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256716004|gb|EEU30979.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 1058

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------G 60
           C  A++  G++          +  D S+   L    L  +   NV              G
Sbjct: 577 CVKAIQRHGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVCDLEQPAGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L +A                 PV  +   +   + +
Sbjct: 637 QTAINLAAGLDQHGIKILGTSVQDLDAAEDRRVFDQVIKDLQLKQPVGLTATTHEGVIAA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   L  +++      +LI+ Y++G E    
Sbjct: 697 ATKIGYPVLVRPSYVLGGKAMEIVYNETELEQYLQDNANVAADHPILIDAYLEGRECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D +  +    +   +       +S  +     P     DI +++         A+ C
Sbjct: 757 AICDGTDVLLPGIMEHIERAG---VHSGDSMAVYPPQSFDQDIKQQIVDATKKLCLALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+    + + + LE+N +   T     P ++   G    ++   ++
Sbjct: 814 IGIMNIQFII--HNHEAYVLEVNPRASRT----VPFLSKITGIEMAQVATRVI 860



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++   ++ +                      SV  ++    PD    
Sbjct: 29  SGTQACLALKEEGYETVLVNSNPATIMTDNEIADHVYIEPLTVESVSRIIRQEYPDAILP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +++  T    +  A   ++ +         VP   +
Sbjct: 89  TLGGQIGLNLAVALAKTGLLDELGIQLLGTKLDSIDQAEDRERFKELMQQLHEPVPASQT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   H I  P +++P       G  +   D  + +        +   Q LIE+
Sbjct: 149 VSTVDEALAFAHQIGYPVIVRPAFTMGGTGGGMCHDDDEMKIIAANGLDLSPVTQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDAKDDAMVVCCMENFDPVGIHTGDSIVFAPNQTLSDREYQMLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKLIRALKIEGGCNVQLALDPNSYHYDVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|188588895|ref|YP_001919509.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum
           E3 str. Alaska E43]
 gi|226700924|sp|B2UX86|CARB_CLOBA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|188499176|gb|ACD52312.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           E3 str. Alaska E43]
          Length = 1069

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  I+ +                       +  V+A  KPD    
Sbjct: 29  SGTQACEALKSEGVEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKVIAKEKPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +  V+      L+   +    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D  + I  P +++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTDLQAGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRTILESGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F  +P + +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 SINIINAVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 95/300 (31%), Gaps = 32/300 (10%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+    +   +           D+             V  ++    P        G
Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++   T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+   
Sbjct: 700 AERLGFPVLVRPSYVIGGQGMEITHDEEELTFYLTNAFAKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P++   D I  ++         AIG
Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDKIKGKILEYTKKLALAIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +G+    F+       ++ +E+N +   T     P ++  +G    ++   ++  A   
Sbjct: 816 IKGMINIQFI--EFEGSLYVIEVNPRASRT----VPYISKVSGVPIVDIATQVMLGAKLN 869


>gi|149908713|ref|ZP_01897374.1| carbamoyl-phosphate synthase large subunit [Moritella sp. PE36]
 gi|149808255|gb|EDM68194.1| carbamoyl-phosphate synthase large subunit [Moritella sp. PE36]
          Length = 1072

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRNIIEKERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         + +   L E      G  A A+   + RS+   +   + +       
Sbjct: 89  TMGGQTALNCALELDSKGVLAEFNVELIGATADAIDKAEDRSRFDKAMKAIGLETPRAGI 148

Query: 115 RFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++        +  P +I+P       G  +    +            +   +LLI++
Sbjct: 149 AHTLEEAKGVLAEVGFPCIIRPSFTMGGSGGGIAYNMEEFEDICTLGLDLSPTTELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLIGWKEYETEVVRDKNDNCIIVCTIENIDPMGIHTGDSITVAPAQTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 MAVLREIGVETGGSNVQFGINPADGRMVIIEMN--PRVSRSS--ALASKATGFPIARIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 93/294 (31%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 582 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRIEKPKGVIVQY 641

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T    +  +   ++ +          P   ++      +
Sbjct: 642 GGQTPLKLARELEAAGVPIIGTSPDAIDRSEDRERFQQAVERLGLLQPDNATVTTTEQAV 701

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
            S   I  P V++P        + ++  +  +     ++ S ++   +L+++++D  IEL
Sbjct: 702 ISAEGIGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFKEAVSVSNESPVLLDRFLDNAIEL 761

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +       +S  +   + P  +  +I   ++         
Sbjct: 762 DVDAICDGKDVVIGGIMEHIEQAG---VHSGDSGCSLPPHSLSPEILDVMRDQVRALALE 818

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+  + F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 819 LGVIGLMNTQFAV--KDNEVYLIEVNPRAART----IPFVSKATGVQLAKIAAR 866


>gi|149007057|ref|ZP_01830726.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|307127134|ref|YP_003879165.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae 670-6B]
 gi|147761361|gb|EDK68327.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP18-BS74]
 gi|306484196|gb|ADM91065.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae 670-6B]
 gi|332074609|gb|EGI85083.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA17545]
          Length = 1058

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++     S  ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNISMAQVATKLI 860



 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|83747767|ref|ZP_00944801.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum
           UW551]
 gi|83725539|gb|EAP72683.1| Carbamoyl-phosphate synthase large chain [Ralstonia solanacearum
           UW551]
          Length = 1038

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 92/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 549 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQYGGQTP 608

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      + I  T   ++ +A   ++ +          P   +       +     
Sbjct: 609 LKLALDLEANGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNRTARAEDEALKLAEE 668

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE     +
Sbjct: 669 IGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIECDVDCL 728

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +      E++R      +A+   G
Sbjct: 729 SDGKRVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSQATVDELKRQTAAMAKALNVVG 785

Query: 243 ISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +  V+ LE+N +   T     P ++   G S  ++   
Sbjct: 786 LMNVQFAIQQKGGEDIVYVLEVNPRASRT----VPYVSKATGISLAKVAAR 832



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/276 (12%), Positives = 82/276 (29%), Gaps = 19/276 (6%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGIL 85
            V+ I+      V  ++A  +PD     + G        D     +L+   +    +   
Sbjct: 19  DVTYIEPITWEVVERIIAKERPDAILPTMGGQTALNCALDLHRHGVLQKYNVELIGASPE 78

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---------PPYVIKPLKGG 136
           A   + D+ + K  ++  G+    S + +                     P VI+P    
Sbjct: 79  AIDKAEDRQKFKDAMTKIGLGSAKSGIAHSLEEALAVQAQIARETGTSGYPIVIRPSFTL 138

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G  +    +       +    +  ++LLIE+ + G +     +     D   I    
Sbjct: 139 GGTGGGIAYNREEFEDICKRGLDLSPTNELLIEESLLGWKEYEMEVVRDKKDNCIIVCSI 198

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
            +     +      +          +          +  +     G S   F  +P   +
Sbjct: 199 ENLDPMGIHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVDTGGSNVQFSINPQDGR 258

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +E+N  P ++  S     +   G+   ++   +
Sbjct: 259 MIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 290


>gi|220907713|ref|YP_002483024.1| urea carboxylase [Cyanothece sp. PCC 7425]
 gi|219864324|gb|ACL44663.1| urea carboxylase [Cyanothece sp. PCC 7425]
          Length = 1209

 Score = 60.7 bits (145), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 94/312 (30%), Gaps = 47/312 (15%)

Query: 22  CASALEDAGF--------------------KVSQIDVDRSVGLVLAHLKP-DLAF----N 56
              +L+  G                     +   +         L   +  D+A      
Sbjct: 17  VLRSLDRLGIASVVVYSEADATAPHVLQAKEAVCLGPAPVGESYLRGDRILDIALQTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+    +  E   I +             K  ++ +    GVP+ P    
Sbjct: 77  AIHPGYGFLSENVEFASRCEQQGIAFIGPTPEQIRAFGLKHTARALAEQQGVPLVPGTDL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P ++K   GG  +G+ V + +  +     +    +  +      
Sbjct: 137 LDTLVEAQTAARAIGYPVMLKSTAGGGGIGMQVCRDEAELIAGYEKVQRLSQTNFKQRGV 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           Y++    T   +        +  V          +  +       PA    + + + +  
Sbjct: 197 YLEKYLQTARHIEVQIFGDGQGQVVALGERDCSTQRRNQKVIEETPAPGISEALRQALYS 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
            A    +A+  R     +F+ D  S + ++LE+N +     G+T         A  G   
Sbjct: 257 AAIRLGKAVNYRSAGTVEFILDVESEQFYFLEVNTRLQVEHGITE--------AVTGL-- 306

Query: 286 RELLLWMVEDAS 297
            +L+ WM+  A+
Sbjct: 307 -DLVEWMLRVAA 317


>gi|332981995|ref|YP_004463436.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis
           50-1 BON]
 gi|332699673|gb|AEE96614.1| carbamoyl-phosphate synthase large subunit [Mahella australiensis
           50-1 BON]
          Length = 1080

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 97/294 (32%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------G 60
           C  AL +AG+    I         D D S  L    L  +   NVL             G
Sbjct: 580 CVWALREAGYGTIIINNNPETVSTDFDTSDRLYFEPLTAEDVANVLEAEQPLGVVVQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    +  A   ++        +   P   ++   +  MD+
Sbjct: 640 QTAIKLTKPVADMGMPIIGTQPLYIDMAEDREEFDKLLNELNIPRPAGATVFTVQEAMDA 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G EL   
Sbjct: 700 ANKLGYPVLVRPSYVLGGQGMEIAHSDKDIEEYIGIVNRVKQEHPILVDKYLMGKELEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            + D    +     P    +       S +S  V PA+     ++++     +   +A+ 
Sbjct: 760 AICDGQDILI----PGIMEHVERAGVHSGDSISVYPAQNISAKHQDIIVDYTYKLAKALH 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G+    F+    +  V+ +E+N +   T     P ++   G     L    V
Sbjct: 816 VIGLVNIQFIV--YNDDVYIIEVNPRSSRT----VPYISKVTGIPMVNLATRAV 863



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/301 (10%), Positives = 81/301 (26%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +   ++ + +                     +  ++    PD     
Sbjct: 30  GTQACQALKAEGIETVLVNSNPATIMTDTNMADNVYIEPLTVDMIEAIIQREHPDSLLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    +++  T +  +  A   +  R         +      
Sbjct: 90  LGGQTGLNLAMELAEKGILDKYNIKLLGTSAQSIRKAEDREAFRETMKAIGEPIVDNVIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P +++P       G  + + +  +          +   Q+++E  
Sbjct: 150 NDLDTALAFARKVGYPVIVRPAYTLGGTGGGIARDEYELRRIASDGLRLSRVHQVIVEPS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  +
Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G     F  DP S   F +E+N  P ++  S     +   GY    +   
Sbjct: 269 INIINALEIEGGCNVQFALDPNSMDYFVIEVN--PRVSRSS--ALASKATGYPIARVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|325848841|ref|ZP_08170351.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
 gi|325480485|gb|EGC83547.1| carbamoyl-phosphate synthase, large subunit [Anaerococcus
           hydrogenalis ACS-025-V-Sch4]
          Length = 1069

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 90/281 (32%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
              AL + G +   I         D D              V  ++    PD       G
Sbjct: 578 AIKALINMGIETITINNNPETVSTDFDTSDKLYFEPLSQEDVLDIIEKENPDGVILAFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T   ++  A   +K  +     +   P    +      +  
Sbjct: 638 QTAIKLAKDLHEHKINIIGTGFDVIDRAEDREKFEALLEKLNIKRPKGYGVKSLEQGLKV 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 698 AKDLGYPVLIRPSYVLGGQGMEITYDEERLKQYLKAAFKRDKENPVLIDKYLIGREIEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +ST + P+    D I +++ +      + + 
Sbjct: 758 AISDGDNILI----PGIMEHLERAGVHSGDSTSIYPSINISDQIKEKIYQETLKIAKELK 813

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 814 VKGMINIQFI--EYQDDIYIIEVNPRASRTVPYISKVSTVP 852



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +   I         D +             +V  ++   +PD    
Sbjct: 29  SGTQACETLKSLGVETVLINSNPATIMTDPNLADRTYIEAINFETVVKIIEKERPDSIIA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + IL+   I    + I A     D+   R         +     
Sbjct: 89  TMGGQTSLNMTLKLYEEGILDKYNIKIIGTDIEAIKKGEDRELFRKTMKEIGQPIVSSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P VI+P       G      D+ +   L    S +   + LIE+
Sbjct: 149 ARSLDQGLKIAQKIGYPLVIRPAYTLGGSGGGFANNDEELKEVLSLGLSLSPVSECLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G  L          +  +I V   +       ++  +        +  +   ++++ 
Sbjct: 209 SIKGW-LEIEFEVLRDNEGKKIVVCDMENVDPVGVHTGDSIVVAPCQSLEKESVNKLKQA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +AIG +G       ++  + +   +EIN  P ++  S     +   GY    +  
Sbjct: 268 SLDIVEAIGVKGACNVQLAYNKENDEYAVIEIN--PRVSRSS--ALASKAVGYPIARIAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|218295540|ref|ZP_03496353.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
 gi|218244172|gb|EED10698.1| carbamoyl-phosphate synthase, large subunit [Thermus aquaticus
           Y51MC23]
          Length = 1030

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 87/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++   +         D D             ++  V+A   PD    
Sbjct: 29  SGTQAVKALRGAGYEAILVNSNPATIMTDPDLAERTYVEPLTLEALEKVIAKEAPDALLP 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +            +E+   ++  +      +  +         VP    
Sbjct: 89  TLGGQTALNLSMALHEEGILKRYGVELIGANAEAIKKGEDREAFQKAMRKIGLEVPRGKM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G  + K +  +   L +  + +     L+E+
Sbjct: 149 VASVEEGLHFAREVGYPVVVRPSFTLGGTGGGIAKDEGELKEVLARGLALSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 KAVIREIGVDTGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 41.0 bits (94), Expect = 0.22,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 85/289 (29%), Gaps = 28/289 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG++   +         D D              V  ++ H KP      L G   
Sbjct: 583 ALKEAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPLGVIATLGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      +++  T    +  A   +             P           ++    
Sbjct: 643 LKLAQGLEEAGVKLLGTPFQAIHQAEDREAFHRLCQRLGIPQPEGRVAKSPEEALELAKE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P + +P        + V+K  + +   L +          ++        L   V  
Sbjct: 703 VGFPLLARPSYVLGGRAMRVLKSQEELKRYLEEVYGPLQEKPSILLDRYLEGALELDVDA 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  +   IA            +S  ++T + P  +  +  ++V+        A+G RG+
Sbjct: 763 LSDGEEVMIAGVMEH-VERAGVHSGDSATVLPPVHLSQEALEKVRAYTRRLALALGVRGL 821

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +       +V+ LE N +   T     P ++   G    +L   +
Sbjct: 822 LNVQYAVL--GEEVYILEANPRASRT----VPFVSKAIGVPLAKLAALI 864


>gi|91202515|emb|CAJ72154.1| strongly similar to pyruvate carboxylase [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1149

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 15/244 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
              +  +D    + LA  K  D      +G   E+       E   I +         L 
Sbjct: 60  DPVKAYLDIEGIIQLAKDKGIDAIHPG-YGFLSENAGFARACEKAGIVFIGPRSEILELL 118

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKK 146
            +K+ ++Q+     VP+           D           P +IK   GG   G+ ++  
Sbjct: 119 GNKISARQIAGQAQVPILSGNKYPIRHPDEAKAFCREVGYPVIIKAANGGGGRGMRIVLG 178

Query: 147 DQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  +   L +      +++ + +  + +       +   ++GD   ++  +         
Sbjct: 179 ESELVGRLNEAQRESMTAFGYDECFIEKYIEKARHIEVQILGDKHKNIVHLYERDCTLQR 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +     L A +  DI       A    +++        +FL D      +++E
Sbjct: 239 RHQKVVEIAPAQHLDASVRQDICN----AAVKICKSVNYDNAGTVEFLLDTEKNTFYFIE 294

Query: 262 INVQ 265
           IN +
Sbjct: 295 INPR 298


>gi|188996965|ref|YP_001931216.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188932032|gb|ACD66662.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 476

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 102/314 (32%), Gaps = 48/314 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54
                 A ++ G K   I                        +   L + +  DLA    
Sbjct: 17  ATRIIRACKELGIKTVAIYSEADAKSIYVKKADEAYLIPGDPIQAYLNYFRIVDLAKQTK 76

Query: 55  FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
            + +H   G   E+           I +        AL  DKM +K+ +   GVP+ P  
Sbjct: 77  CDAIHPGYGFLSENPEFAEYCVRQGIIFIGPKPEHIALFGDKMAAKKKMRELGVPILPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
              I   +   +  + I  P ++K   GG   G+ +++ +         +       +  
Sbjct: 137 DEPISDMKKAKEIANEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGK 196

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           GD  + +   +   +   +M D   +V  +            +             +  +
Sbjct: 197 GDVFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQ----RRHQKIVEIARSPSLDEE 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + KE+ R +  A   +G   +   ++L D  +   +++E+N +  +       EM    G
Sbjct: 253 VKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNTR--LQVEHTVTEM--VTG 307

Query: 283 YSFRELLLWMVEDA 296
               +++  M+E A
Sbjct: 308 I---DIVQKMIEIA 318


>gi|290580681|ref|YP_003485073.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans
           NN2025]
 gi|254997580|dbj|BAH88181.1| carbamoylphosphate synthetase large subunit [Streptococcus mutans
           NN2025]
          Length = 1059

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NSVDEAVAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 30/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQNAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D         +   P   +       + S  
Sbjct: 639 AINLAEPLSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAIVSAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +    F+       V+ +E+N +   T     P ++        ++   ++  +S
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQIATKLILGSS 864


>gi|170782387|ref|YP_001710720.1| carbamoylphosphate synthetase large chain [Clavibacter
           michiganensis subsp. sepedonicus]
 gi|189081826|sp|B0REV9|CARB_CLAMS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169156956|emb|CAQ02125.1| carbamoylphosphate synthetase large chain [Clavibacter
           michiganensis subsp. sepedonicus]
          Length = 1096

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D                +  ++   +PD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPGFADATYIEPITSEVLEKIIIKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +  ++      L    +    + + A     D+   K +V      V     
Sbjct: 89  TLGGQTALNAAIRLDELGILAKHGVELIGAKVEAIQKGEDRQLFKDLVIESGADVARSHV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P VI+P      LG       Q +   +      +   ++L+E+
Sbjct: 149 AKTLEQAVEFAEDLGYPLVIRPSFTMGGLGSGFAHTRQELERMVADGLQSSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D T +     +     +      +          +        
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQHMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIRRVGVDTGGCNIQFAVDPTNGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|163857856|ref|YP_001632154.1| carbamoyl phosphate synthase large subunit [Bordetella petrii DSM
           12804]
 gi|163261584|emb|CAP43886.1| carbamoyl-phosphate synthase large chain [Bordetella petrii]
          Length = 1080

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 92/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   KPD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIEREKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D   Q +L    +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHQGVLAKHNVELIGANEQAIEKAEDRQKFKQAMTDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHSMDEAWEVQRRIAAETGTSGFPAVIRPSFTMGGSGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 SELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRNASIAVLREIGVDTGGSNVQFAVNPDNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/331 (13%), Positives = 103/331 (31%), Gaps = 51/331 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+           A AL + G++   +         D D S 
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAALALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +    ++H            G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTPLKLARALEANGVPIIGTSPESIDVAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +          P   +       +     I  P V++P        + ++ + Q +
Sbjct: 676 RERFQKLLNKLGLRQPPNRTARTEGEALAHAADIGYPLVVRPSYVLGGRAMEIVHEQQDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  +  E+    + D         +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNNATEVDVDCLADGETVFIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  ++  E++R   +  +A+   G+    F        V+ LE+N +   T
Sbjct: 793 SACSLPPYSLSAEVIAEIKRQTTMMARALNVNGLMNVQFAI--QGGDVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                P ++   G      L  +   A   R
Sbjct: 851 ----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|24379315|ref|NP_721270.1| carbamoyl phosphate synthase large subunit [Streptococcus mutans
           UA159]
 gi|81845295|sp|Q8DUP3|CARB_STRMU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|24377237|gb|AAN58576.1|AE014927_5 carbamoylphosphate synthetase, large subunit [Streptococcus mutans
           UA159]
          Length = 1059

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITIEFVTRILRKERPDAILPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSRAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NSVDEAVAFAAKIGYPVIVRPAFTLGGTGGGMCADEKELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 30/295 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+++AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQNAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D         +   P   +       + S  
Sbjct: 639 AINLAEPLSHAGVTILGTQVADLDRAEDRDLFEQALKDLNIPQPPGQTATNEEEAVASAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVESENDLRSYMRTAVKASPDHPVLVDSYLVGSECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +    F+       V+ +E+N +   T     P ++        ++   ++  +S
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQIATKLILGSS 864


>gi|148358640|ref|YP_001249847.1| carbamoyl phosphate synthase large subunit [Legionella pneumophila
           str. Corby]
 gi|148280413|gb|ABQ54501.1| carbamoyl phosphate synthase, large subunit [Legionella pneumophila
           str. Corby]
          Length = 1049

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 11  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 70

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +L    +    +   A   + D+ + +Q++   G+ +  S +
Sbjct: 71  TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 130

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 131 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTRELLIDE 190

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 191 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 250

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 251 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 306

Query: 291 WM 292
            +
Sbjct: 307 KL 308



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL    AG++   +         D D              V  ++A  +P+      
Sbjct: 562 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 621

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T S  +  A   ++ +          P   ++      +
Sbjct: 622 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 681

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +  + I  P V++P        + ++ +++ +   L  +   ++   +L++++  D IE+
Sbjct: 682 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 741

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +           ++  + P  + + + +++          
Sbjct: 742 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 798

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F        ++ LE+N +   T     P ++   G    ++
Sbjct: 799 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 843


>gi|54298614|ref|YP_124983.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila
           str. Paris]
 gi|296108270|ref|YP_003619971.1| carbamoyl-phosphate synthase large chain [Legionella pneumophila
           2300/99 Alcoy]
 gi|53752399|emb|CAH13831.1| carbamoyl-phosphate synthase large subunit [Legionella pneumophila
           str. Paris]
 gi|295650172|gb|ADG26019.1| carbamoyl-phosphate synthase large chain [Legionella pneumophila
           2300/99 Alcoy]
          Length = 1067

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                     + V  ++   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVILVNSNPATIMTDPELADATYIEPVQWKEVARIIEIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D + + +L    +    +   A   + D+ + +Q++   G+ +  S +
Sbjct: 89  TMGGQTALNCALDLVREGVLAKYSVEMIGATREAIDRAEDREKFRQLMIKIGLDMPRSAI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +  Q  +  P +I+P       G  +    +      ++    +   +LLI++
Sbjct: 149 AHSLEEAIQVQARLGFPAIIRPSFTMGGSGGGIAYNREEFEEICIRGLELSPTRELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKNDNCIIVCTIENFDPMGVHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKVLRAVGVDTGGSNVQFAINPEDGRMLVVEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/291 (12%), Positives = 96/291 (32%), Gaps = 33/291 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL    AG++   +         D D              V  ++A  +P+      
Sbjct: 580 VHAALSLRSAGYQTIMVNCNPETVSTDFDTSDRLYFEPVTLEDVLSIVAMEQPEGVIVHY 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G              ++I  T S  +  A   ++ +          P   ++      +
Sbjct: 640 GGQTPLKLARDLEANGVKIIGTSSDAIDMAEDRERFQQMVKELKLHQPDNGTVRSEAEAI 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +  + I  P V++P        + ++ +++ +   L  +   ++   +L++++  D IE+
Sbjct: 700 ELANKIGYPLVVRPSYVLGGRAMEIVYQEEDLRYYLSHAVEVSNDSPVLLDKFLNDAIEV 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +           ++  + P  + + + +++          
Sbjct: 760 DIDAVCDGKDVLIGAIMEHIEQAGIHSG---DSACTLPPFSLGVVVQQDLIEQIRKMALK 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +G  G+  + F        ++ LE+N +   T     P ++   G    ++
Sbjct: 817 LGVVGLINAQFAIQADD--IYVLEVNPRASRT----VPFVSKATGLPLAKI 861


>gi|322391730|ref|ZP_08065197.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris
           ATCC 700780]
 gi|321145440|gb|EFX40834.1| carbamoyl-phosphate synthase, large subunit [Streptococcus peroris
           ATCC 700780]
          Length = 1058

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELKQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 NTVEGAVAFAATIGYPVIVRPAFTLGGTGGGMCANEAELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAS 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +   +          + C G
Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQDTIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|313889246|ref|ZP_07822900.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312844800|gb|EFR32207.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 1067

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/292 (14%), Positives = 92/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
              AL   G +   I         D D              V  ++   KP        G
Sbjct: 578 AIKALIKMGIETITINNNPETVSTDFDTSDKLYFEPLTEEEVKSIIDTEKPMGVILAFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + + I  T    +  A   +K            P    +   +  +++
Sbjct: 638 QTAIKLAKYLHEQKVNIFGTDFEDIDRAEDREKFDEMLEELKINRPKGHGVFTIKEGLET 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +S P +++P       G+ +   + S+   L  +   +  + +LI++Y+ G E+   
Sbjct: 698 AKELSYPLLVRPSYVLGGQGMQITYDENSLMTYLKSAFERDAINPVLIDKYLVGREIEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P   I  +I  ++        +A+ 
Sbjct: 758 AISDGEDVLI----PGIMEHLERAGVHSGDSITIYPSINISSEIKDKILDYTKKIAKALH 813

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    F+       ++ +E+N +   T     P ++  +G    +L   
Sbjct: 814 VKGMINIQFI--EYKNDLYIIEVNPRASRT----VPYISKVSGVPIVDLATK 859



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G +   ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACETLKNNGVETVLVNSNPATIMTDKGVADKIYIEPITISFIEKIIEKERPDSLIA 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  ++           +++  T    +      D  R         +     
Sbjct: 89  GMGGQTGLNMTLELDKRGILDKYGIKVIGTDIDAIKKGEDRDIFRKTMQEIGEPIIESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    I  P V++P       G      ++ +   L    S +  ++ L+E+
Sbjct: 149 ATSLEEGKELAKKIGYPLVVRPAYTLGGTGGGFAYDEEELVEVLSHGLSLSPVNECLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G  +             +I V   +       ++  +        +  D+ ++++  
Sbjct: 209 SIRGW-MEIEFEVIRDSAGEKIIVCDMENVDPVGVHTGDSIVVAPCQSLDKDVLQKLKNS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G        +P +     +EIN  P ++  S     +   GY    +  
Sbjct: 268 ALNIVENVNVVGACNVQLALNPETLDYAVIEIN--PRVSRSS--ALASKATGYPIARIAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|309800594|ref|ZP_07694739.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           SK1302]
 gi|308115774|gb|EFO53305.1| carbamoyl-phosphate synthase, large subunit [Streptococcus infantis
           SK1302]
          Length = 1058

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELNQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGQNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|288961257|ref|YP_003451596.1| urea carboxylase [Azospirillum sp. B510]
 gi|288913565|dbj|BAI75052.1| urea carboxylase [Azospirillum sp. B510]
          Length = 1228

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 27/179 (15%), Positives = 66/179 (36%), Gaps = 16/179 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +IK   GG  +G+ + ++ +++       S  +  +      +++        + 
Sbjct: 150 IGYPVMIKSTAGGGGIGMQLCREPETLEPMFEAVSRLSRNNFKDGGVFLEKFIERARHIE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
                  +  V          +  +       PA  I  D+ +++   A    +A+  + 
Sbjct: 210 VQIFGDGQGGVVALGERDCSAQRRNQKVIEETPAPGIGDDLRRKLFDAAERLGRAVNYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D  + + ++LE+N +     G+T            G    +L+ WM+  A+
Sbjct: 270 AGTVEFVYDEAAGEAYFLEVNTRLQVEHGVTE--------EVTGI---DLVEWMIRQAA 317


>gi|89098721|ref|ZP_01171603.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL
           B-14911]
 gi|89086683|gb|EAR65802.1| carbamoyl-phosphate synthase large subunit [Bacillus sp. NRRL
           B-14911]
          Length = 1070

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACIALKEEGYRVILVNSNPATIMTDTEIADAVYIEPLTLEFVSRIIRKERPDAIVPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +E+  T    +  A   D  RS        VP    I
Sbjct: 90  LGGQTGLNLAVELSKAGVLEECGVEVLGTKLSAIEKAEDRDLFRSLMNELGEPVPESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q L+E+ 
Sbjct: 150 HNIDEALAFAEQIGYPVIVRPAFTLGGTGGGICHDEEELLEITASGLKNSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 IAG-FKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALEIEGGCNVQLALDPYSFDYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 92/279 (32%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+ A     G   
Sbjct: 580 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGAVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   + +   ++I  T    L  A   DK            P   +             
Sbjct: 640 INLAAELVKRGVKILGTSLENLDRAEDRDKFEMALTDLGIPQPQGKTAFSAEDAAVIAAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVYKEEELLHYMKNAVRVNPEHPVLIDRYLTGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +  ++  ++        + +G  G+
Sbjct: 760 DGERVVIPGIMEHIERAG---VHSGDSIAVYPPQNLTDEVKAKLAEYTEKLAKGLGIIGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++      +VF LE+N       P ++ ++  P  
Sbjct: 817 LNIQYVV--AKGEVFVLEVNPRSSRTVPFLSKITNVPMA 853


>gi|87119094|ref|ZP_01074992.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121]
 gi|86165485|gb|EAQ66752.1| Allophanate hydrolase subunit 2 [Marinomonas sp. MED121]
          Length = 1240

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 87/270 (32%), Gaps = 28/270 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    + D      +G   E+    +  E   I +         L   K  +++ 
Sbjct: 64  EKLIHIAKQHQVDAIHPG-YGFLSENTEFVSQCEQANIAFIGPTSAQMNLFGLKHLAREA 122

Query: 100 VSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               GVP+ P    +      +   + I  P ++K   GG  +G+        +      
Sbjct: 123 AEKAGVPLVPGSPLLTKQEDAIQWANEIGYPIMLKSTAGGGGIGMQACFNQDEMVGAWES 182

Query: 157 -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 + +++    L +   +   +   + GD       +            K      
Sbjct: 183 VKRLGENYFSNDGVFLEKLIQNARHIEVQIFGDGQGQAISLGERDCSAQRRNQKVIEETP 242

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PG 267
            H LP      + +++   A     ++  R     +F+FD  ++  ++LE+N +     G
Sbjct: 243 AHNLPH----AVREQLHHTAERLMASVNYRNAGTVEFIFDDDAKAFYFLEVNTRLQVEHG 298

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +T         A  G    +L+  M++ A+
Sbjct: 299 VTE--------AVWGV---DLVACMIKQAA 317


>gi|298675345|ref|YP_003727095.1| carbamoyl-phosphate synthase large subunit [Methanohalobium
           evestigatum Z-7303]
 gi|298288333|gb|ADI74299.1| carbamoyl-phosphate synthase, large subunit [Methanohalobium
           evestigatum Z-7303]
          Length = 1076

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 97/302 (32%), Gaps = 29/302 (9%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVD------------RSVGLVLAHLKPDLAFNVLH 59
             VS  S +   S + +   +    D D              V  V+   +PD       
Sbjct: 574 HAVSAISEENIESHIINNNPETVSTDYDTSDKLFFEPLTLEDVMNVIEKEQPDGVLVQFG 633

Query: 60  GNFGEDGLVQAILELLEIPY-------THSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           G    +  +    EL            T    + +A   DK  +         P     L
Sbjct: 634 GQTSVNLSLPLQHELERRNDLKTKIFGTSPDKIDTAEDRDKFYALMKELGINQPDGRYAL 693

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++    I  P +++P        + ++  ++ +   L +S   +  + +LI+ ++
Sbjct: 694 SQGEAINFATEIGYPVLVRPSYVLGGRAMEIVYDEEELKRYLRESVCVSKDNPILIDDFL 753

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +G +E+    + D    +    +   +       +S  ++  + P  +  +  + V+   
Sbjct: 754 EGAVEIDVDAVCDGENVLIGAIMEHIEEAG---VHSGDSACVIPPQSLTEETMEIVRDYT 810

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                ++  +G+            +V+ LE N +   T     P ++   G    ++   
Sbjct: 811 RKIALSLDVKGLINIQM--AKRDGEVYVLEANPRSSRT----IPFVSKAVGIPLAKIAAQ 864

Query: 292 MV 293
           ++
Sbjct: 865 VI 866



 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                     R V  ++   +PD    
Sbjct: 30  SGSQACRALREEGIEVVLVNSNPATIMTDPEMADSVYIEPLEPRVVEKIIERERPDGIIA 89

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G  G +   +      LE   +    + + A   + D+   K+ +      VP   +
Sbjct: 90  GLGGQTGLNVTSELSDLGALEKYNVKLLGTPLDAITNTEDRELFKEKMGDIGEKVPQSKA 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +   +    +  P +++P       G  +    + +   + +    +   Q+L+E+
Sbjct: 150 ISSLKEAEEMIDELGLPLIVRPAYTLGGAGGGIAHTKEQLFEIVERGLRRSRIHQVLVEE 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +           + T + +   + +     ++  +        +  + ++ ++  
Sbjct: 210 SVLGWKEF-EYEVMRDSNDTCVIICNMENFDPMGIHTGESIVVTPSQTLSDEEHQMLRSS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    ++ G  G     F           +E+N  P ++  S     +   GY    +  
Sbjct: 269 AINIIRSFGIEGGCNIQFAV--KDGDYRVVEVN--PRVSRSS--ALASKATGYPIARVTA 322

Query: 291 WM 292
            +
Sbjct: 323 KI 324


>gi|297622731|ref|YP_003704165.1| carbamoyl-phosphate synthase large subunit [Truepera radiovictrix
           DSM 17093]
 gi|297163911|gb|ADI13622.1| carbamoyl-phosphate synthase, large subunit [Truepera radiovictrix
           DSM 17093]
          Length = 1027

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 46/298 (15%), Positives = 88/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AGF+V  I+ +                          V+A  +PD    
Sbjct: 29  SGTQACKALRAAGFEVVLINANPATIMTDPEVADRTYIEPLTPEVAERVIAQERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G       +      +LE   +    +   A     D+   +  +   G+      +
Sbjct: 89  TLGGQTALNLAKALYETGVLERYGVELIGANYEAINKGEDRELFQAAMRKIGIKTPAGKM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V      +D    I  P +I+P       G  V   +      + +    +    +L+EQ
Sbjct: 149 VGSLEEALDFVATIGYPAIIRPSFTLGGTGGGVAYDEAEFRQIVRRGLHDSPVHTVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYELEVMRDHNDTVVIICSIENVDPMGVHTGDSITVAPAQTLSDKEYQRLRDDA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P + +V  +E+N  P ++  S     +   GY   ++
Sbjct: 269 IAIIREIGVDTGGSNIQFAVNPRNGEVMVIEMN--PRVSRSS--ALASKATGYPIAKI 322



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 86/289 (29%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG++   I         D D              V  V+   +P      L G   
Sbjct: 580 ALKEAGYETIMINSNPETVSTDYDTADRLYFEPLTFEDVLNVIEREEPAGVIVQLGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  +A A   D             P           +     
Sbjct: 640 LKLAAPLEAAGVPIWGTPARAIAEAEDRDAFHRLCARLGVPQPAGGVAQRPAEALTLAAS 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++ + ++   L +  +   G   ++            V  
Sbjct: 700 LGYPLMVRPSFVLGGRAMQVVEDEGALERYLREVYAELPGSPSILLDAFVAGAQEVDVDA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  +   +A            +S  ++    P  +  ++   +   +    +AIG RG+
Sbjct: 760 LADGERVVVAGIMEHIEG-AGVHSGDSACITPPVSLSDEVIATLHDYSTRLARAIGVRGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
               F+      +V  +E N +   T     P ++   G+    +  L+
Sbjct: 819 INLQFVV--KGGEVLVIEANPRASRT----VPYLSKAIGHPLAKYAALI 861


>gi|170717932|ref|YP_001784982.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus
           2336]
 gi|168826061|gb|ACA31432.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus somnus
           2336]
          Length = 414

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 82/308 (26%), Gaps = 38/308 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 45  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRSYTISMLDGDALKALIEKEKPDYIVPEV 104

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 105 EAIATSTLVELEQAGFNVVPTAKATQLTMNREGIRRLAAEKLKLPT-SNYQFVDNFDDFQ 163

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P VIKP+   S  G  ++K    +        +   G        V+G    
Sbjct: 164 SAVENLGIPCVIKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 221

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  + +    + Q +A      +
Sbjct: 222 D--YEITLLTVRHAEGTSFLAPIGHRQEKGDYRESWQPQAMSVQALAKAQHIAEKITTEL 279

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289
           G RGI   +         V + E++ +P   GM       +S F   A    G    E+ 
Sbjct: 280 GGRGIFGVEMFVCGDD--VIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 336

Query: 290 LWMVEDAS 297
             ++  A+
Sbjct: 337 -NLISPAA 343


>gi|152966945|ref|YP_001362729.1| carbamoyl-phosphate synthase, large subunit [Kineococcus
           radiotolerans SRS30216]
 gi|189081829|sp|A6WCC6|CARB_KINRD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|151361462|gb|ABS04465.1| carbamoyl-phosphate synthase, large subunit [Kineococcus
           radiotolerans SRS30216]
          Length = 1104

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEMADATYVEPITPAVVEAIIAKERPDAVLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE        + + A  L  D+   K VV  CG     S L
Sbjct: 89  TLGGQTALNTAIALYENGVLEKYGTELIGADVEAIKLGEDRQLFKGVVERCGAESARSHL 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P V++P      LG      +  +     Q    +   ++L+E+
Sbjct: 149 CHSMEEVLAGAADLGYPVVVRPSFTMGGLGSGFAYDEADLRRIAGQGLHHSPVTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +F    +      +          +  +     
Sbjct: 209 SILGWKEYELELMRDRADNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQRMRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|302670200|ref|YP_003830160.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio
           proteoclasticus B316]
 gi|302394673|gb|ADL33578.1| carbamoyl-phosphate synthase large subunit CarB1 [Butyrivibrio
           proteoclasticus B316]
          Length = 1088

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  +           D+             +  ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADEVYIEPLTVKVLEQIIEKEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      L+   +    +       + D+   K  +   G P   S  +
Sbjct: 90  LGGQAGLNLGMELDESGFLKSHGVKLLGTTAETIRKAEDRQEFKDTMEKIGEPCAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +          L      +  +++L+E+ 
Sbjct: 150 HNVEDGISFAGKIGYPVVLRPAFTLGGSGGGIAYNAAQCREILENGLRLSRANEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   SL          +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSLGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLSDKEYQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIDELKITGGCNVQFALHPTSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/287 (12%), Positives = 90/287 (31%), Gaps = 34/287 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++   I         D D              V  ++   KPD A     G   
Sbjct: 603 AFKNEGYETIIINNNPETVSTDFDIADKLYFEPLTAEDVENIVRLEKPDGAVVQFGGQ-- 660

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +    +       + D+    Q++    +       +       +  
Sbjct: 661 TAIKLTQDLMKMGVKIYGTDAKDVDAAEDREIFDQILEETQIKRAQGATVYTAEEAKEVA 720

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D+ I   +   + +     +L+++Y+ G+E     
Sbjct: 721 NRLGYPVLVRPSYVLGGQGMQIALSDEEIEEFMNIINRYAQDHPILVDKYLQGVETEVDA 780

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +           + +      +   + + +        +A+   
Sbjct: 781 VCDGEDIVIPGIMEHIERSGIHSG---DSISVYPAQSLSDKVKETIAEYTKRLAKALHVI 837

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F+   +  +V+ +E N +   T     P ++   G    +L
Sbjct: 838 GLINVQFI--AVGDEVYIIEANPRSSRT----VPYISKVTGIPIVDL 878


>gi|299770714|ref|YP_003732740.1| urea carboxylase [Acinetobacter sp. DR1]
 gi|298700802|gb|ADI91367.1| urea carboxylase [Acinetobacter sp. DR1]
          Length = 1201

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LADEAEALTEATRIGYPVMLKSTAGGGGIGMRLVWNEVELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|253688770|ref|YP_003017960.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755348|gb|ACT13424.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 1201

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V      +             +      +++       
Sbjct: 147 AVAIGYPVMLKSTAGGGGIGMRVCYSATELSDAFETVKRLGQNNFSDAGVFIEKYIECAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +   +   A    QA+ 
Sbjct: 207 HLEVQIFGDGQGDVLALGARDCSVQRRNQKVIEETPAPNLPDGVADALCAAAISLAQAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|257437802|ref|ZP_05613557.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium
           prausnitzii A2-165]
 gi|257199725|gb|EEU98009.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium
           prausnitzii A2-165]
          Length = 1083

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 83/302 (27%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +   +         D D              V  +L   KPD    
Sbjct: 29  SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILEIEKPDSVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++      L+   I            + D+   +         +     
Sbjct: 89  NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     I  P +++P       G  + +  + +          +   Q+L+E+
Sbjct: 149 VETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKEKLIEIGTNGLRLSPIHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                 + Y+ ++  
Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A      +G  G     F   P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSYDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 10/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            SV  ++A  KPD       G              L I  T +  +  A   ++      
Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158
                     ++      + +   I  P +++P        +IV      +   + + + 
Sbjct: 686 RCKIPRAPGRTVFNLEEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +    +L+++Y+ G E     + D    +    + + +       +S  +        
Sbjct: 746 HVDMDHPVLLDKYIMGTECEVDAICDGENFLIPGIMEQVERTG---VHSGDSICVYPAQH 802

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +        + +   G+    +     + KV+ +E+N +   T     P ++
Sbjct: 803 LTQAEIDTMVDYTGRFARELHVTGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856

Query: 279 AYAGYSFREL 288
              G    +L
Sbjct: 857 KVTGVPMVDL 866


>gi|283797347|ref|ZP_06346500.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|291075019|gb|EFE12383.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. M62/1]
 gi|295090497|emb|CBK76604.1| carbamoyl-phosphate synthase large subunit [Clostridium cf.
           saccharolyticum K10]
          Length = 1071

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +              DV          +  ++   +PD    
Sbjct: 28  SGTQACKALRKLGYEIVLVNSNPATIMTDPETADVTYIEPLNVDRLTQIIEKERPDALLP 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +L+   +      + A     D+   K+ ++S G+ +  S  
Sbjct: 88  NLGGQSGLNLCSELAAAGVLDKYNVQVIGVQVDAIERGEDREEFKETMASLGIEMARSEV 147

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 148 AYSVEEALAIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   S +         +       ++  +        I  ++ K +Q  
Sbjct: 208 SILGWEELELEVVRDSKNNMITVCFIENIDP-VGVHTGDSFCSAPMLTISEEVQKRLQEK 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++   +AI   G +   +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 267 SYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA-LVS 321

Query: 291 WMV 293
            M+
Sbjct: 322 AML 324



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 97/290 (33%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL++ GF+   +         D D S  L    L  +   ++ H            G   
Sbjct: 578 ALKELGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTP 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   D  R+     +  +P     +     ++  + 
Sbjct: 638 LNLAADLKKYGVNILGTTPETIDMAEDRDLFRAMMDKLNIPMPESGMAVNVEEALEIANK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+  D+++   + Q+        +LI++++           
Sbjct: 698 IGYPVMVRPSYVLGGRGMEVVHDDEAMSFYMQQAVGVTPDRPILIDRFL---HHATECEA 754

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + VP    +       S +S  +LP++   +D  + ++       + +   G
Sbjct: 755 DAISDGENVFVPAVMEHIELAGIHSGDSACILPSRNLTMDQVETIKDYTSRIAKEMHVVG 814

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +       +V+ LE N +   T     P ++        +L   +
Sbjct: 815 LMNMQYAI--EDGEVYVLEANPRASRT----VPLVSKVCNIKMVKLATDI 858


>gi|119960857|ref|YP_948005.1| carbamoyl phosphate synthase large subunit [Arthrobacter aurescens
           TC1]
 gi|166989830|sp|A1R6Z3|CARB_ARTAT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|119947716|gb|ABM06627.1| carbamoyl-phosphate synthase, large subunit [Arthrobacter aurescens
           TC1]
          Length = 1102

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +LE   +    + I A  L  D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I        +   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 IHTMEEAFAAAEDLGYPMVVRPSFTMGGLGSGLAYNEDDLRRIVGQGLQYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQKLRDVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPATGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|149927093|ref|ZP_01915351.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105]
 gi|149824314|gb|EDM83534.1| carbamoyl-phosphate synthase large subunit [Limnobacter sp. MED105]
          Length = 1076

 Score = 60.7 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+KV  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYKVVLVNSNPATIMTDPEMADVTYIEPITWQVVERIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L    +    +   A   + D+++ K  ++S G+    S +
Sbjct: 89  TMGGQTALNCALDLAKHGVLAKYNVELIGAKEEAIEKAEDRLKFKNAMTSIGLDSAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P +I+P       G  +    +       +    +  
Sbjct: 149 AHSMEEALEVQARIAKEVGSNGFPVIIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +   S D   I     +     +      +          + 
Sbjct: 209 NELLIEESLIGWKEYEMEVVRDSADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDREY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QLMRNASIAILREIGVDTGGSNVQFSINPANGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 103/313 (32%), Gaps = 47/313 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVD--- 39
           + VL GG +         G+           A AL + G++   +         D D   
Sbjct: 563 IIVLGGGPN-------RIGQGIEFDYCCVHAAMALREDGYETIMVNCNPETVSTDYDTSD 615

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  ++A  KP        G              + I  T    +  A  
Sbjct: 616 RLYFEPLTLEDVLEIVAIEKPVGVIVQYGGQTPLKLAKSLEANGVPIIGTSPESIDIAED 675

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            ++ +      +   P   +       +     I  P V++P        + ++ + + +
Sbjct: 676 RERFQKLLTKLNLRQPPNRTARTEAEAIAHAQEIGYPLVVRPSYVLGGRAMEIVHEQKDL 735

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++   ++   +L++++  D IE+    + D    +    +   +       +S  
Sbjct: 736 ERYMREAVKVSNDSPVLLDRFLNDAIEVDVDALCDGQTVMIGGVMEHIEQAG---VHSGD 792

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  +  D+  E++R + L  +A+   G+    F     +  V+ LE+N +   T
Sbjct: 793 SACCLPPYSLSADMVTELKRQSELMAKALNVIGLMNVQFAI--QNDTVYVLEVNPRASRT 850

Query: 270 PVSIFPEMAAYAG 282
                P ++   G
Sbjct: 851 ----VPYVSKATG 859


>gi|331087292|ref|ZP_08336362.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330408978|gb|EGG88439.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 1075

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 100/306 (32%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADVTYIEPLNVDRIEQIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          + ++              +            +P     ++ K +
Sbjct: 209 SILGWEELELEVVRDANNNMITVCFIENIDPLGVHTGDSFCAAPMLTIP----ENVQKRL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  ++   +AI   G +   +  DP + +   +EIN +   T  S     +   G+    
Sbjct: 265 QEKSYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSAML 325



 Score = 42.6 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKQLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYEKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R+        +P     +     ++    
Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALEIAEK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI++++           
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVHDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         L + +V      R
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869


>gi|325663772|ref|ZP_08152176.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470265|gb|EGC73498.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 1075

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/306 (14%), Positives = 100/306 (32%), Gaps = 39/306 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPDVADVTYIEPLNVDRIEQIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIEL---TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E          + ++              +            +P     ++ K +
Sbjct: 209 SILGWEELELEVVRDANNNMITVCFIENIDPLGVHTGDSFCAAPMLTIP----ENVQKRL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  ++   +AI   G +   +  DP + +   +EIN +   T  S     +   G+    
Sbjct: 265 QEKSYKIVEAIQVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA- 319

Query: 288 LLLWMV 293
           L+  M+
Sbjct: 320 LVSAML 325



 Score = 42.6 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKQLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYEKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R+        +P     +     ++    
Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEALEIAEK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI++++           
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVHDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         L + +V      R
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869


>gi|254787389|ref|YP_003074818.1| urea carboxylase [Teredinibacter turnerae T7901]
 gi|237686682|gb|ACR13946.1| urea carboxylase [Teredinibacter turnerae T7901]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/267 (13%), Positives = 79/267 (29%), Gaps = 20/267 (7%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  ++A    D      +G   E+    A  +   I +             K  ++ 
Sbjct: 63  TEKLFAIMAQAGVDAVHPG-YGFLSENADFVAECDKRNIAFIGPRPEHMQAFGLKHEARA 121

Query: 99  VVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +  +  VP+ P    +      + +   I  P ++K   GG  +G+ V K    +  +  
Sbjct: 122 LAVAQQVPLLPGSDLLDSEDEALLAAATIGYPIILKSTAGGGGIGMQVCKDAAELQKNFA 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
                   +      +++        +                      +          
Sbjct: 182 SVKRLGANNFANDGVFIEKYIEFARHIEVQVFGDGAGNAVAFGERDCSAQRRHQKVIEET 241

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P   IP D+  ++   A     A+        +F++D  + + ++LE+N           
Sbjct: 242 PAPNIPDDVRSQLHLTATKLLAAVNYLNAGTVEFIYDQNTHQFYFLEVNT---------- 291

Query: 275 PEMAAYAGYSFR----ELLLWMVEDAS 297
             +    G +      +L+ WMV  A+
Sbjct: 292 -RLQVEHGVTEEVFKVDLVAWMVRQAA 317


>gi|284036028|ref|YP_003385958.1| D-alanine--D-alanine ligase [Spirosoma linguale DSM 74]
 gi|283815321|gb|ADB37159.1| D-alanine--D-alanine ligase domain protein [Spirosoma linguale DSM
           74]
          Length = 551

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/140 (22%), Positives = 59/140 (42%), Gaps = 4/140 (2%)

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF---YSYELKYSSLNSTHVLPAKIP 220
           D++L E+++ G E +CGV+ D       +   +      + +E KY    +   +P +  
Sbjct: 298 DEVLFEEFITGQEFSCGVIQDDDQVAIALPPTEIYNVTSFDFESKYKLNTTKKRIPVETS 357

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           L+  +++Q         +G    SR D    P    V   + N  PGM+P S+  +  A 
Sbjct: 358 LENNRKIQLAVAQVFTRLGINVYSRIDGFLTPA-GDVLLHDPNTIPGMSPSSLIFKQMAE 416

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G +    L +++  +   R
Sbjct: 417 IGLNLANSLTYLIRQSLRER 436



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 55/201 (27%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD--------------------- 39
           + +  GG + EREVS + G+   + L+   F+   + VD                     
Sbjct: 3   IGIFFGGPAREREVSFAGGRTALANLDKGLFEPVLVFVDGRGRFRLVSPDFLQSPSLHDA 62

Query: 40  -----------------RSVGLVLAHLKP-------DLAFNVLHGNFGEDGLVQAILELL 75
                             ++  +L  L+P       DLAF  +HG   EDG +Q +LE  
Sbjct: 63  LPQDSSGFSVYDESLAVDTLDAILPELRPEQFRDHFDLAFLAMHGPDCEDGAIQGLLEWH 122

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP--------- 126
           ++PYT  G++ SA+ ++K+   ++++        +  ++R   +                
Sbjct: 123 KMPYTGPGLVGSAVGINKILQNELIALANGQKKKTATISRDDYEQADKAQFFQSLVEHLG 182

Query: 127 -PYVIKPLKGGSSLGIIVIKK 146
            P VIK    GSS+G+ ++++
Sbjct: 183 LPIVIKAPHQGSSIGVAIVRE 203


>gi|153808795|ref|ZP_01961463.1| hypothetical protein BACCAC_03095 [Bacteroides caccae ATCC 43185]
 gi|149128621|gb|EDM19839.1| hypothetical protein BACCAC_03095 [Bacteroides caccae ATCC 43185]
          Length = 388

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 48/306 (15%), Positives = 97/306 (31%), Gaps = 49/306 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSV--------------------------GLVLAHLKPD 52
             A A  L+ +G++V+ I  D++                              L   K D
Sbjct: 14  AMAIAECLKKSGYEVAVICDDKNEYGYHTKFADERYLGVNSNKKEYAEFMLKFLKEHKFD 73

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           +       +       +  L+ L      S  +      DK     V    G P   ++ 
Sbjct: 74  VLIPTSDTSAEFMSFHKEELQKLTGVMMPSREIFEK-GYDKNNLMHVCQKNGFPCPKTVD 132

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  +   S+ ++     P ++KP       G+I++   + +     +  +      L   
Sbjct: 133 LKGWDCCSEDILKDFFYPGLLKPNLTSGGRGMILVNNFEELKNVYPEIHAGYGNCHLQQF 192

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
               G ++   +M D   DV   +V     Y      SS  +  +           E+  
Sbjct: 193 IKEGGRQVKVQIMTDIKGDVAYSSVIWKQRYYPVNGGSSCCNVTID--------DPEIAT 244

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP---EMAAYAGYSFR 286
           +     + IG  G +  D + DP ++++  +EIN +         P     A  +G  + 
Sbjct: 245 ICGKVLKTIGWVGFADFDLIEDPQTKQLLIMEINPR--------IPACVRSAFKSGMDYA 296

Query: 287 ELLLWM 292
            ++  M
Sbjct: 297 TMIADM 302


>gi|229822746|ref|ZP_04448816.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271]
 gi|229787559|gb|EEP23673.1| hypothetical protein GCWU000282_00034 [Catonella morbi ATCC 51271]
          Length = 1059

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 98/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                       V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYQVILVNSNPATIMTDRQIADKVYMEPLTLEFVSKIIRKERPDALLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111
           L G  G +       Q +L+   +    + + +   + D+   +Q++      VP    +
Sbjct: 90  LGGQVGLNLAVQLHRQGVLDQYGVELLGTKLASIEQAEDRQLFRQLMQELGEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    I  P +++P       G  +   DQ +   +     ++   Q L+E+ 
Sbjct: 150 TNLDQARDFVAQIGYPVIVRPAFTMGGTGGGICYNDQDLDEIVSSGLHYSPVTQCLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y  ++ ++
Sbjct: 210 IAG-YKEIEYEVMRDANDTAIVVCNMENIDPVGIHTGDSVVVAPSQTLTDREYHMLRDVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPDSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/299 (12%), Positives = 94/299 (31%), Gaps = 36/299 (12%)

Query: 20  KACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVL 58
            A   A++ AG++   I+ +                       V  +L H +P       
Sbjct: 576 HAVL-AIKAAGYEAIIINNNPETVSTDFTISDKLYFEPLTEEDVMAILNHEQPLGVVVQF 634

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +   +     ++I  T    +  A + DK            P+  +       +
Sbjct: 635 GGQTAINLADKLQRHGVKILGTSLEEIDKAENRDKFEQLLHELDIPQPLGKTASDTETAV 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +++P        + ++ ++  +   +  +   +    +L ++Y+ G E+ 
Sbjct: 695 ANAASIGYPVLVRPSYVLGGRAMEIVYEEADLRRYMETAVRVSPEHPVLTDRYLIGQEIE 754

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    V    +   +       +S  +     P  +     +++        + +
Sbjct: 755 VDAICDGQTVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSQAQKEQLVDYTIRLAKGL 811

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
              G+    ++      +++ LE+N       P ++ ++  P          G S  +L
Sbjct: 812 NIVGLLNIQYVL--SKGELYVLEVNPRSSRTVPFLSKITGVPMAQLAMQAILGQSLSDL 868


>gi|322376823|ref|ZP_08051316.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M334]
 gi|321282630|gb|EFX59637.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           M334]
          Length = 1058

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVILVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVLAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVVDLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KNEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|312277931|gb|ADQ62588.1| Carbamoyl-phosphate synthase large chain [Streptococcus
           thermophilus ND03]
          Length = 1059

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860


>gi|293608524|ref|ZP_06690827.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829097|gb|EFF87459.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 743

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LSDEAEALTEAAHIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQR 229
           Y++        +        +  V         ++  +       PA    +  +  +Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQREYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|294650425|ref|ZP_06727787.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823696|gb|EFF82537.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/314 (14%), Positives = 90/314 (28%), Gaps = 47/314 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHL--------------KPDLAF--------N 56
               L+  G +   +    DR  + + LA                  D           N
Sbjct: 17  VIRTLKKLGIQSVAVYSEADRDSLHVTLADEAIYIGDAPASQSYLNVDKILEVAKQTGAN 76

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             + A  L           +   +P    
Sbjct: 77  AIHPGYGFLSENADFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++   + +       S     +      
Sbjct: 137 LADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFATVSYLAQANFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQR 229
           Y++        +        +  V         ++  +       PA    D  +  +Q 
Sbjct: 197 YLEKFVQNARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNDQQRSYIQT 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  ++  ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNTRLQVEHGVTE--------QVYGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|225017616|ref|ZP_03706808.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum
           DSM 5476]
 gi|224949581|gb|EEG30790.1| hypothetical protein CLOSTMETH_01545 [Clostridium methylpentosum
           DSM 5476]
          Length = 1067

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 92/267 (34%), Gaps = 14/267 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F    I     V  ++A  KP        G        +     + I  T +  + 
Sbjct: 604 DRLYFDPVYI---EDVASIIATEKPYGVVVQFGGQTAIKLTKKLQEMGVRILGTSADSID 660

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +A   ++            P   ++      + + + +  P +++P        +I+   
Sbjct: 661 AAEDRERFDELLEKCGIPRPAGTTVFTAEEAVKAANELEYPVLLRPSYVLGGQNMIIAHS 720

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ I   +   +S N  + +L+++Y+ G+E+    + D    +     P    +      
Sbjct: 721 DKDIEEYMAIITSHNIENPVLVDKYMMGVEVEVDAICDGEDYLI----PGIMEHIERAGV 776

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  V P +     I + +         A+  RG+    ++    + +V+ +E+N +
Sbjct: 777 HSGDSISVYPCQNLSKSIRETIIDYTAKLALALDVRGLLNIQYVV--YNDEVYVIEVNPR 834

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++   G    +L   +
Sbjct: 835 SSRT----VPYISKVTGVPMVDLATKI 857



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      +V  ++   KPD   + 
Sbjct: 30  GTQACRALKEEGLEVVLVNSNPATIMTDKAMADHIYIEPLTLETVKRIIEIEKPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L    +    +       + D+   K  +   G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAKDGFLAEHGVKLLGARPETIDKAEDRQEFKDTMEKIGQPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  + +  +            +   Q+L+E+ 
Sbjct: 150 ENIDDAVAFANEIGLPLIIRPAFTLGGTGGGIAETMEEFIEIATNGLRLSPITQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDSKGNVITVCSMENVDP-VGVHTGDSIVVAPAVTLTDKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LDIISELEVEGGCNCQFALHPESFEYAVIEVN--PRVSRSS--ALASKATGYPIAKIATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|261419031|ref|YP_003252713.1| carbamoyl phosphate synthase large subunit [Geobacillus sp.
           Y412MC61]
 gi|319765848|ref|YP_004131349.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
 gi|261375488|gb|ACX78231.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC61]
 gi|317110714|gb|ADU93206.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           Y412MC52]
          Length = 1042

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDVLEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLAESPIRQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 637 QFGGQTAINLVKGLEEAGVSLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAEE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P       G+ ++  +  +   + Q         +LI+ Y+DG E
Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLAALIEQGELTY---PILIDAYLDGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235
               ++ D     T+I +P    +  +    S +S   LPA+    +   ++   A    
Sbjct: 754 AEADIVTD----GTDIVLPVIIEHVEKAGVHSGDSYAWLPAQTLTDEEKAKIIDYASRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|254416184|ref|ZP_05029939.1| carbamoyl-phosphate synthase, large subunit [Microcoleus
           chthonoplastes PCC 7420]
 gi|196177117|gb|EDX72126.1| carbamoyl-phosphate synthase, large subunit [Microcoleus
           chthonoplastes PCC 7420]
          Length = 1072

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     V  V+A  +PD    
Sbjct: 17  SGTQACKALQQEGYEVVLVNSNPATIMTDPETADRTYIEPLTPEIVEKVIAKERPDALLP 76

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A  ++ D+   K+ +   G+ VCPS +
Sbjct: 77  TMGGQTALNIAVTLAKNGVLDKYGVDLIGAKLDAIEMAEDRQLFKEAMGRIGIGVCPSGI 136

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           + + P +I+P       G  +    +            +   Q+L+E
Sbjct: 137 ASNLDEAKALAQRIGTYPLIIRPAYTLGGTGGGIAYNQEEYEEMAQAGLDASPVSQILVE 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 197 QSLLGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P+S  V  +E+N  P ++  S     +   G+   +  
Sbjct: 257 SIQIIREIGVETGGSNIQFAINPVSGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 312

Query: 290 LWM 292
             +
Sbjct: 313 AKL 315



 Score = 44.1 bits (102), Expect = 0.029,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 83/299 (27%), Gaps = 38/299 (12%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   GF+   ++                         V  ++   KP+       G   
Sbjct: 574 ALAKQGFETIMVNSNPETVSTDYDTSDRLYFEPLTKEDVLNIIETEKPEGIIIQFGGQTP 633

Query: 64  EDGLVQAILELLEIPYTHSGILASA--------LSMDKMRSKQVVSSCGVPVCPS--ILV 113
               V     L       S              ++ D+ R ++++    +   P+     
Sbjct: 634 LKLAVPLQEFLNNPEIPTSVPTKIWGTSPDSIDIAEDRERFEKILRQLDIKQPPNGIARS 693

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               ++    I  P V++P        + ++  D  +   +  +        +LI+++++
Sbjct: 694 YEEALNIAKRIGYPVVVRPSYVLGGRAMEIVYSDLELERYMTFAVQVEPEHPILIDKFLE 753

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V   A      +     +       +S  ++  +    +     + ++     
Sbjct: 754 N-AIEVDVDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSIPFISLSPTAMETIRTSTHQ 812

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +   G+    F        V+ LE N +   T     P ++   G     L   +
Sbjct: 813 LATKLKVIGLMNIQFAV--QGETVYILEANPRASRT----VPYVSKATGVPLAALASRI 865


>gi|183979202|emb|CAQ42993.1| carbamoyl phosphate synthetase [Streptococcus thermophilus]
          Length = 1059

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860


>gi|55820608|ref|YP_139050.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus LMG 18311]
 gi|55822498|ref|YP_140939.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus CNRZ1066]
 gi|116627411|ref|YP_820030.1| carbamoyl phosphate synthase large subunit [Streptococcus
           thermophilus LMD-9]
 gi|81820333|sp|Q5M0W9|CARB_STRT1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|81820496|sp|Q5M5F6|CARB_STRT2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122267990|sp|Q03LT8|CARB_STRTD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|55736593|gb|AAV60235.1| carbamoyl phosphate synthetase, large chain [Streptococcus
           thermophilus LMG 18311]
 gi|55738483|gb|AAV62124.1| carbamoyl phosphate synthetase, large chain [Streptococcus
           thermophilus CNRZ1066]
 gi|116100688|gb|ABJ65834.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           thermophilus LMD-9]
          Length = 1059

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAEDNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860


>gi|126641323|ref|YP_001084307.1| allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC
           17978]
 gi|126387207|gb|ABO11705.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii ATCC
           17978]
          Length = 900

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 49  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 108

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 109 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 168

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 169 YLEKFVQHARHIEVQIFGDGQGKVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 228

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 229 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 278

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 279 -DLVEWMVTLASGD 291


>gi|260549612|ref|ZP_05823830.1| biotin carboxylase [Acinetobacter sp. RUH2624]
 gi|260407405|gb|EEX00880.1| biotin carboxylase [Acinetobacter sp. RUH2624]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAVQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|254432413|ref|ZP_05046116.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC
           7001]
 gi|197626866|gb|EDY39425.1| carbamoyl-phosphate synthase, large subunit [Cyanobium sp. PCC
           7001]
          Length = 1113

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  +         D D              V  V+A  KPD    
Sbjct: 29  SGTQACKALRAEGYEVVLVNSNPASIMTDPDMADRTYIEPLTPEVVARVIAIEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L    +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLAEFGVELIGADLEAIRKAEDRQLFKQAMEKIGVAVCPSGI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N           + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ANNLEEAEAVGDAIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAFCKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +   + D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   +L 
Sbjct: 269 SIAIIREIGVDTGGSNIQFAINPANGDVVVIEMN--PRVSRSS--ALASKATGFPIAKLA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|187477421|ref|YP_785445.1| carbamoyl phosphate synthase large subunit [Bordetella avium 197N]
 gi|115422007|emb|CAJ48529.1| carbamoyl-phosphate synthase large chain [Bordetella avium 197N]
          Length = 1079

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 39/309 (12%), Positives = 92/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++   +              DV        ++V  ++   +PD    
Sbjct: 29  SGAQACKALKAEGYRTILVNSNPATIMTDPETADVTYIEPITWQAVEKIIERERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L   ++    +   A   + D+ + K  ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAHNGVLAKYKVELIGANEHAIEKAEDRQKFKMAMNDIGLESAKSGV 148

Query: 113 VNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +      +              P VI+P       G  +    +       +    +  
Sbjct: 149 AHTMEEAWEVQRRIAAEIGTSGFPAVIRPSFTLGGTGGGIAYNAEEFETICRRGLEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEFEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+
Sbjct: 269 QIMRDASIAVLREIGVDTGGSNVQFAVNPKNGRMIVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAARL 333



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 93/298 (31%), Gaps = 35/298 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + GF+   +         D D S  L    L  +    ++H            G   
Sbjct: 589 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVHKENPVGMIVQYGGQTP 648

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +          P   +       +     
Sbjct: 649 LKLARALEANGVPIIGTSPESIDVAEDRERFQKLLNKLGLRQPPNRTARTEAEALAHAAE 708

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ + Q +   + ++   ++   +L++++  +  E+    +
Sbjct: 709 IGYPLVVRPSYVLGGRAMEIVHEQQDLERYMREAVKVSNDSPVLLDRFLNNATEVDVDCL 768

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  DI  E++R      +A+   G
Sbjct: 769 ADGETVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSADIVAEIKRQTTTMARALNVSG 825

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    F        V+ LE+N +   T     P ++   G      L  +   A   R
Sbjct: 826 LMNVQFAV--QDGDVYVLEVNPRASRT----VPYVSKATGLQ----LAKIAARAMAGR 873


>gi|15921798|ref|NP_377467.1| carbamoyl phosphate synthase large subunit [Sulfolobus tokodaii
           str. 7]
 gi|22095518|sp|Q970U7|CARB_SULTO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15622585|dbj|BAB66576.1| 1049aa long hypothetical carbamoyl-phosphate synthase large subunit
           [Sulfolobus tokodaii str. 7]
          Length = 1049

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 97/296 (32%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAF- 55
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETILVNSNVATVQTSRKFADKLYMIPVTWWAVEKVIERERPDGIMV 86

Query: 56  -----NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                  L+               +++  T    +  ALS +K R   +     VP   S
Sbjct: 87  GFGGQTALNVGVDLYNKGILQKYGVKVLGTPIEGIERALSREKFRETMINVGLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G IV   ++ +  D+ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEALEKARQIGYPVMVRVSFNLGGRGSIVAWNEEELKRDIGRALSQSYIHEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+    +                +   +       ++  ++       +    +++++ +
Sbjct: 207 YLHHW-IELEYEVMRDKYGNSAVIACIENLDPMGVHTGESTVISPCQTLDNKEFQDMRFM 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    ++I   G     F  DP     + +E N  P M+  S     +   GY   
Sbjct: 266 SMDVAKSIDLVGECNVQFALDPKGYNYYVIETN--PRMSRSS--ALASKATGYPLA 317



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 74/225 (32%), Gaps = 7/225 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   K         G  G +   +   E + +  T    + +A   +K      
Sbjct: 619 ERVLDLIRKEKFTYVATFTGGQIGNNISKKLEEEGIRLLGTSGRSIDTAEDREKFSKLLD 678

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   S        +    +  P +I+P    S   + ++  D  +   L +++ 
Sbjct: 679 KLGIKQPEWISARSLEEVKEFISKVGYPVLIRPSYVLSGAAMKIVNNDLELMEYLKRATE 738

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +    ++I +Y++            +    +        +  E    S ++T  +P + 
Sbjct: 739 VSPEHPVVISKYLN----DAIEAEIDAAGDGKGVYGVVIEHVEEAGVHSGDATMSIPYRK 794

Query: 220 -PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              ++  +++    +  + +  +G     F+    + + + +E+N
Sbjct: 795 LSSNVVNKMKENVHMIVRELEIKGPFNVQFVI--KNNEPYIIELN 837


>gi|225851167|ref|YP_002731401.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
 gi|225645341|gb|ACO03527.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
          Length = 478

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 49/325 (15%), Positives = 98/325 (30%), Gaps = 62/325 (19%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV--------------------------LAHLK 50
                 A ++ G K   I    D +   V                              +
Sbjct: 19  ATRIIRACKELGIKTVAIYSEADSNGIWVKKADEAYMIPGDPIRAYLNFYKIVDLAKQTR 78

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D      +G   E+    +  E   + +        AL  DK+ SK+ +   GVPV P 
Sbjct: 79  CDGIHPG-YGFLSENADFASYCEKRGLIFIGPKPEHIALFGDKIASKKAMKEVGVPVLPG 137

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               I    +       I  P +IK   GG   G+ +++K+                 + 
Sbjct: 138 TDEPITDIDYAKKIAREIGFPVIIKAAYGGGGRGMRIVEKESDFEELFRSATAEAEKFFG 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            GD  + +   +   +   +M D   +V  +            +            ++  
Sbjct: 198 KGDVFIEKYVKNPRHIEIQIMADKYGNVIHLGERDCSIQ----RRHQKIVEIAPSPRLND 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           ++ +E+ R+A  +   +G   +   +FL D      +++E+N +              + 
Sbjct: 254 EVRRELYRVAVKSMFKLGYESVGTLEFLVDEDDN-FYFIEMNTR----------LQVEHT 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +L+  M++ A   R
Sbjct: 303 VTETVTGV---DLVQRMIQIAEGTR 324


>gi|209528194|ref|ZP_03276664.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima
           CS-328]
 gi|209491379|gb|EDZ91764.1| carbamoyl-phosphate synthase, large subunit [Arthrospira maxima
           CS-328]
          Length = 1077

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+ V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALREEGYDVVLVNSNPATIMTDPETARRTYIEPLTPEIVEKVIEAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L+   +    + + A   + D++  KQ +   GV  CPS +
Sbjct: 89  TMGGQTALNIAVALSKNGVLDKYGVELIGAKLDAIEKAEDRLLFKQAMEKIGVGCCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N               P +I+P       G  +    +      +     +   Q+L+E
Sbjct: 149 ANNLNEARAIAEQIGSYPLIIRPAFTMGGTGGGIAYNQEEYEELAIAGLDASPMSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLIGWKEYELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++  V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 AIKIIREIGVETGGSNIQFSVNPVNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 42.2 bits (97), Expect = 0.088,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  D+ +   +  +        +L++++++       
Sbjct: 709 AGRIGYPVVVRPSYVLGGRAMEIVYSDEELERYMTFAVLVEPDHPILVDKFLENAVEVDV 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
                +     + +     +  +    S +S   +P +   + +   ++R      +A+ 
Sbjct: 769 --DAIADHTGNVVIGGIMEHIEQAGIHSGDSACSIPTQSLSETVLATIRRQTIQLAKALN 826

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F       +V+ LE N +   T     P ++   G    ++   
Sbjct: 827 VVGLMNIQFAV--QGEQVYILEANPRASRT----VPFVSKAIGIPLAKMASR 872


>gi|228922639|ref|ZP_04085939.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
 gi|228837068|gb|EEM82409.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar huazhongensis BGSC 4BD1]
          Length = 1018

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   I+ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIINNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/259 (14%), Positives = 87/259 (33%), Gaps = 11/259 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMR 95
             V  ++   +PD     L G  G +  V+     +L+   +    + + A   + D+  
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLNMAVELAKSGVLDECGVEILGTKLSAIEQAEDRDL 77

Query: 96  SKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            + ++     P  PS  I          + I  P +++P       G  +   ++ +   
Sbjct: 78  FRTLMQDLNEPTPPSEIIHNLDEAYGFVNEIGYPVIVRPAFTLGGTGGGICHNEEELIEI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      +   Q L+E+ + G +     +   S D   +     +     +         
Sbjct: 138 VTSGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVVA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S 
Sbjct: 198 PSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPYSFQYYVIEVN--PRVSRSS- 253

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   GY   +L   +
Sbjct: 254 -ALASKATGYPIAKLAAKI 271


>gi|239815598|ref|YP_002944508.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           S110]
 gi|239802175|gb|ACS19242.1| carbamoyl-phosphate synthase, large subunit [Variovorax paradoxus
           S110]
          Length = 1082

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 91/309 (29%), Gaps = 38/309 (12%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  I              DV        ++V  ++A  +PD    
Sbjct: 29  SGVQACKALREEGYKVILINSNPATIMTDPATADVTYIEPITWQTVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAI-----------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
            + G    +  +                   +    +   A   + D+++ K  ++  G+
Sbjct: 89  TMGGQTALNCALDLWRHGVLDKYTGAATNKPVELIGATPEAIDKAEDRLKFKDAMTKIGL 148

Query: 106 PVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
               S            Q  +  P VI+P       G  +    +       +    +  
Sbjct: 149 GSARSGIAHSMDEAWAVQKSVGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGIEASPT 208

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           ++LLIE+ + G +     +     D   I     +     +      +          + 
Sbjct: 209 NELLIEESLLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPAQTLSDKEY 268

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
                    +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+
Sbjct: 269 QILRNASLAVLREIGVDTGGSNVQFSINPKDGRMVVIEMN--PRVSRSS--ALASKATGF 324

Query: 284 SFRELLLWM 292
              ++   +
Sbjct: 325 PIAKVAAKL 333



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 95/295 (32%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 584 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPLGVIVQY 643

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 644 GGQTPLKLALDLEANGVPIIGTSPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 703

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++++++   + 
Sbjct: 704 EKAAALGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDRFLN-DAVE 762

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +   +     +       +S  ++  + P  +  +   E++R +     A+
Sbjct: 763 CDVDCIRDAEGQTLIGGVMEHIEQAGVHSGDSACSLPPYSLSAETIAELKRQSAAMAAAL 822

Query: 239 GCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F       K  ++ LE+N +   T     P ++   G    ++   
Sbjct: 823 NVVGLMNVQFAIQQKDGKDVIYVLEVNPRASRT----VPYVSKATGIQLAKVAAR 873


>gi|237752815|ref|ZP_04583295.1| carbamoyl-phosphate synthase subunit large [Helicobacter
           winghamensis ATCC BAA-430]
 gi|229376304|gb|EEO26395.1| carbamoyl-phosphate synthase subunit large [Helicobacter
           winghamensis ATCC BAA-430]
          Length = 1089

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 87/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A  L++ GFKV  I+ +                       V  ++   K D    
Sbjct: 29  SGTQAAKTLKELGFKVVLINSNPATIMTDPEFADRTYIEPITEEVVADIIKKEKVDAILP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +LE ++        +         +   +     +P      
Sbjct: 89  TMGGQTALNIAMSMFEKGMLEGVKFLGAKPEAIKKGEDRQAFKEAMLKIGMDLPKSRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V                 +  +++LIE+ +
Sbjct: 149 TLEEALEAAKEIGFPLIIRASYTLAGGGSGVAYNIDEFKALAQNGLEVSPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +    +D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDRVDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAINPSTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/262 (11%), Positives = 89/262 (33%), Gaps = 16/262 (6%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            V   +     +V  V+   KPD    ++H        +   L  +      +      +
Sbjct: 616 DVLYFEPITFENVRSVIEREKPDGI--IVHFGGQTPLKLAKKLTTIGAKIIGTSAKTIDI 673

Query: 90  SMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+ +  + V   G+      +       +     I  P +++P        + ++   
Sbjct: 674 AEDREKFAKFVEENGLLQPKNGTAYTKEEAISIAQNIGFPVLVRPSYVLGGRAMRIVYSV 733

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             +   + ++ S +    +LI+++  + IEL   ++ D         +   +        
Sbjct: 734 LELQEYMSEAVSVSEDSPVLIDKFLNNAIELDVDIICDGEDVYIAGIMQHIEEAGIHSG- 792

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              ++  +    I  +  +E+++      + +G  G+  + +     +  ++ +E+N + 
Sbjct: 793 --DSACSLPTISISQEKLEEIEQTTAKIARNLGVIGLMNTQYAIFEDT--LYLIEVNPRA 848

Query: 267 GMTPVSIFPEMAAYAGYSFREL 288
             T     P ++   G    ++
Sbjct: 849 SRT----VPFVSKATGIPLAKV 866


>gi|156102637|ref|XP_001617011.1| carbamoyl phosphate synthetase II [Plasmodium vivax SaI-1]
 gi|148805885|gb|EDL47284.1| carbamoyl phosphate synthetase II, putative [Plasmodium vivax]
          Length = 2192

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAH--------- 48
            G S E +    S   C   +     K   I         D D S  L             
Sbjct: 1670 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1726

Query: 49   ---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                K         G    + +       + I  T +  +    + +K  +         
Sbjct: 1727 YSFEKSHGVIIAFGGQTSNNLVFSLYKNSVNILGTSAKSVDCCENRNKFSNLCDSLKIDQ 1786

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           +   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1787 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 1846

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 1847 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1904

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    +++   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 1905 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1958

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 1959 IDLATRIL 1966



 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 662 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 721

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 722 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLREINEIIAPYGS 781

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 782 ARNVEQAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELIKK-CKEIFLQTDNEIFIDK 840

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 841 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREI 899

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 900 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 951


>gi|325121676|gb|ADY81199.1| UreA amidolyase related protein [Acinetobacter calcoaceticus
           PHEA-2]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LANEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|194477256|ref|YP_002049435.1| carbamoyl-phosphate synthase, large subunit [Paulinella
           chromatophora]
 gi|171192263|gb|ACB43225.1| carbamoyl-phosphate synthase, large subunit [Paulinella
           chromatophora]
          Length = 1100

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 103/314 (32%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  I         D D              V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYEVVLINSNPASIMTDPDMADRTYIEPLTPEVVTRVIELERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + D++  KQ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVTLARVGILERFGVELIGANLQAIQKAEDRLLFKQAMERIEVHVCPSGI 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +         + + S P +I+P       G  +    +       +    +   Q+LIE
Sbjct: 149 ASNLEEAKEVGETIGSYPRIIRPAFTLGGSGGGIAYNPEEFFAICKEGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +   + D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P+  +V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVDTGGSNIQFAINPVDGEVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340



 Score = 38.3 bits (87), Expect = 1.5,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 55/172 (31%), Gaps = 7/172 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V++P        + V+     +   + ++        +LI+QY++   +   
Sbjct: 729 ADNVGYPVVVRPSYVLGGRAMEVVFDKADLKRYINEAVKVEPNHPVLIDQYLEN-SIEVD 787

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V     ++   +     +       +S  ++  +    +       ++  +     A+  
Sbjct: 788 VDAICDINQQVVIGGLMEHIEPAGIHSGDSACCLPAISLSNKTLDIIREWSKDLAIALEV 847

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    F       +V+ +E N +   T     P +A   G     +   +
Sbjct: 848 NGLINLQFAV--QGEQVYIIEANPRASRT----IPFVAKATGVPLARIASQL 893


>gi|170077261|ref|YP_001733899.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
 gi|169884930|gb|ACA98643.1| hypothetical protein SYNPCC7002_A0638 [Synechococcus sp. PCC 7002]
          Length = 384

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 61/310 (19%), Positives = 114/310 (36%), Gaps = 35/310 (11%)

Query: 19  GKACASALEDAGFK-VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA--ILELL 75
               A+ALED GF+ V  +  D ++G  L   +  LA+    G  G + +     ILE+L
Sbjct: 55  AHDIAAALEDLGFQHVFVLPDDATLGDRLRKHQIHLAWLNTGGVQGYNPVCHTPAILEML 114

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-----------TMDSQHLI 124
            +PY     L S++  +K   K+ +   G P  P ++ +                +    
Sbjct: 115 GVPYIGHNPLNSSILDNKHSFKRELQGLGFPTAPFMIWHPAQGKFTAKDNARFQQTFGDY 174

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
              +++KP+ G +SL I  + + Q +   +       H +  LIE ++ G E    V G 
Sbjct: 175 QGSFLVKPVSGRASLNIHFVDQPQDLGEAIANIHQQTH-NTALIEPFLTGREFCVSVCGY 233

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-------------- 230
                 +    +S F    L+        +  +     I  +  R               
Sbjct: 234 VRHRQGQFEKLESPFTFSILERLLEADEKIFTSMDKKAITGQRIRFLDDSDPAKKKLAKL 293

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-----VSIFPEMAAYAGYSF 285
           A   +       + R D   D +   +  LE N +P +        S+  +  +  G ++
Sbjct: 294 AQQVYWEFSLNALIRIDARMDAMGN-IQILEANPKPDLKRPAANVTSLVAQGLSEEGMTY 352

Query: 286 RELLLWMVED 295
            +L+L ++ D
Sbjct: 353 EDLILSLISD 362


>gi|149019270|ref|ZP_01834632.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP23-BS72]
 gi|147931140|gb|EDK82119.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP23-BS72]
          Length = 1058

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +          +      +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPVQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|257467326|ref|ZP_05631637.1| carbamoyl phosphate synthase large subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315918455|ref|ZP_07914695.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692330|gb|EFS29165.1| carbamoyl-phosphate synthase subunit large [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 1068

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 91/279 (32%), Gaps = 33/279 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  ++   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       ++I  T +  +  A   +K            P   +       +   +
Sbjct: 641 AIKLAKDLEKRKIKILGTSAEKIDEAEDREKFEEMMEDLDIKRPRGRASWDVEHGIAIAN 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    +
Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEINLVKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +       +++  +     +A+  +
Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYAGTEEQILEITTKIARALKVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           G+    F+      +++ +E+N       P ++ +S  P
Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+   +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + ILE   I    + I +     D+   R         +     
Sbjct: 88  GMGGQTALNMVVELFEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILTSHV 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P V++P       G       Q +   LL+  S +   Q+LIE+
Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++R
Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 ASLKIVEEIGIIGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TKL 324


>gi|297530997|ref|YP_003672272.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
 gi|297254249|gb|ADI27695.1| carbamoyl-phosphate synthase, large subunit [Geobacillus sp.
           C56-T3]
          Length = 1042

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++A  +PD    
Sbjct: 29  SGTQACIALKEEGYRVILVNNNPATIMTDEVHADAVYFEPLTVDAVEAIIAKERPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G  G +   Q      LE   +    + I A     D+   R+        VP    
Sbjct: 89  TFGGQTGLNLAFQLHEAGVLEKYGVRLLGTPIEAIKRGEDREAFRALMHELGEPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  + +  +     + +  + +   Q LIE+
Sbjct: 149 VTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLAESPIRQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  DP S++ + +E+N  P ++  S     +   GY    +  
Sbjct: 268 AVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 94/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 578 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 636

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                     + 
Sbjct: 637 QFGGQTAINLVKGLEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLMANNAQE 696

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P       G+ ++  +  +   + Q         +LI+ Y+DG E
Sbjct: 697 LAAKAAEIGCPVLLRPSYVIGGRGMFIVHSEAQLVALIEQGELTY---PILIDAYLDGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235
               +    + D T+I +P    +  +    S +S   LPA+    +   ++   A    
Sbjct: 754 AEADI----ATDGTDILLPTIIEHVEKAGVHSGDSYAWLPAQTLTDEEKAKIIDYAGRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 810 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 861


>gi|295094928|emb|CBK84019.1| carbamoyl-phosphate synthase, large subunit [Coprococcus sp.
           ART55/1]
          Length = 1068

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI-----------DVDRSVGLV-LAHLKPDLAFNVLH-------GNFGED 65
           A E  G++   +           D+   +    L     +   N+ H             
Sbjct: 584 AFERKGYETIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVNLEHPDGAVVQFGGQTA 643

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L  + +P   +       + D+    +++  C +P      +      +++ + 
Sbjct: 644 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+       + +         ++   G
Sbjct: 764 DGDDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 820 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 97/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G  V  I+        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTVDVVKAIIEKEKPDSLLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G    +  ++         +      T S  +  A    + +         V     +
Sbjct: 90  LGGQAALNIAMELDESGFLREHDVLLIGTSSTTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  + + ++     L+     +   Q+L+E+ 
Sbjct: 150 TTVQGGLNFVKKIGYPVVLRPAYTLGGSGGGIAENEEEFKEILMNGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +  +G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYNLDEIKNAITKK 341


>gi|225375971|ref|ZP_03753192.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM
           16841]
 gi|225212224|gb|EEG94578.1| hypothetical protein ROSEINA2194_01608 [Roseburia inulinivorans DSM
           16841]
          Length = 1068

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+               +  ++A  KPD     
Sbjct: 30  GTQACRSLKEEGVEVVLVNSNPATIMTDKEIADEVYIEPLTVDVLEKIIAKEKPDSVLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +    Q +L+   +    +       + D+   K  +   G P   S  +
Sbjct: 90  LGGQAGLNLGMELAEQGVLDKYGVKLIGTTAETIFKAEDRQAFKDTMEKIGEPCAASQVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +   + I  P V++P       G  +   +Q +   L      +   ++L+E+ 
Sbjct: 150 NNVQDGIKFTNTIGYPVVLRPAFTLGGSGGGIAHNEQELVDILTNGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDANGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 31/257 (12%), Positives = 85/257 (33%), Gaps = 13/257 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              V  ++   KPD A     G       +   L  + +    +       + D+    +
Sbjct: 616 TEDVEAIVKIEKPDGAVVQFGGQ--TAIKLTESLMKMGVKILGTKAEDVDAAEDRELFDE 673

Query: 99  VVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           ++    +P      +       +  + +  P +++P       G+ +   D+ I   +  
Sbjct: 674 ILEKTQIPRAAGGTVFTAEEAKEVANRLGYPVLVRPSYVLGGQGMKIAFNDEEIEEFIGI 733

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +       +L+++Y+ G E+    + D +  +    +   +           + +    
Sbjct: 734 INRIAQDHPILVDKYLQGKEIEVDAVCDGTDILIPGIMEHIERTGIHSG---DSISVYPA 790

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
             I   + + +        QA+   G+    F+   +  +V+ +E+N +   T     P 
Sbjct: 791 PTISEPVKEMIVEYTKRLAQALHVIGLINIQFIV--MDEQVYVIEVNPRSSRT----VPY 844

Query: 277 MAAYAGYSFRELLLWMV 293
           ++   G    +L   ++
Sbjct: 845 ISKVTGIPIVDLATKVI 861


>gi|163815132|ref|ZP_02206513.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759]
 gi|158449541|gb|EDP26536.1| hypothetical protein COPEUT_01288 [Coprococcus eutactus ATCC 27759]
          Length = 1068

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 96/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI-----------DVDRSVGLV-LAHLKPDLAFNVLH-------GNFGED 65
           A E  G++   +           D+   +    L     +   N+ H             
Sbjct: 584 AFERKGYETIIVNNNPETVSTDFDIANKLYFEPLTAEDVEAIVNLEHPDGAVVQFGGQTA 643

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L  + +P   +       + D+    +++  C +P      +      +++ + 
Sbjct: 644 IKLTEALMEMGVPILGTSAENVDAAEDRELFDEILEKCCIPRPAGKTVFTREQALEAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMQIAISDKDIIEFMDIINRHTQEHPILVDKYIMGKEVEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+       + +         ++   G
Sbjct: 764 DGDDILI----PGIMEHVERAGIHSGDSISVYPAQTLSPKTKRVIADYTKKLANSLHVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++   G    +L   ++
Sbjct: 820 LINIQFI--AYNDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRVI 864



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 96/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G  V  I+        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLCVVLINSNPATIMTDKDIADKVYIEPLTVDVVKAIIEKEKPDSLLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G    +  ++         +      T S  +  A    + +         V     +
Sbjct: 90  LGGQAALNIAMELDESGFLREHDVLLIGTSSTTIKKAEDRLEFKKTMEKIHEPVAPSEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  +   ++     L+     +   Q+L+E+ 
Sbjct: 150 TTVQGGLNFVKKIGYPVVLRPAYTLGGSGGGIANNEEEFKEILMNGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDANGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRSSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +  +G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNIKGGCNVQFALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYNLDEIKNAITKK 341


>gi|114777974|ref|ZP_01452888.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1]
 gi|114551761|gb|EAU54313.1| Allophanate hydrolase subunit 2 [Mariprofundus ferrooxydans PV-1]
          Length = 1199

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 59/182 (32%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +  K + +             +      +++       
Sbjct: 147 AESIGYPVMLKSTAGGGGIGMQLCWKAEDLVSAFESVKRLGRSNFSNDGVFLEKYIEHAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V          +  +       PA    D +   +   A    +A+ 
Sbjct: 207 HIEVQIFGDGKGFVTALGERDCSTQRRNQKVLEESPAPNISDAVRAAMMDTAVRLGEAVE 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++DP S   ++LE+N +     G+T            G    +L+ WM+  
Sbjct: 267 YRSAGTVEFIYDPNSESFYFLEVNTRLQVEHGVTE--------EVTGV---DLVEWMIRL 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|258510765|ref|YP_003184199.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
 gi|257477491|gb|ACV57810.1| urea carboxylase [Alicyclobacillus acidocaldarius subsp.
           acidocaldarius DSM 446]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVD 173
                I  P ++K   GG  +G+ V++++ ++              +      + +    
Sbjct: 145 CVCADIGYPVILKSTAGGGGIGMRVVEREDALADAFESVRRLAGQHFRDDGVFVEKYVPR 204

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   + G+   ++  I            + +           +  +  + +   A  
Sbjct: 205 ARHIEVQIFGNRQGELVAIGERDCTLQ----RRNQKVVEECPAHVLSDETRRRLHEAALS 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELL 289
             +A+G R     +FL+DP S   ++LE+N +     G+T            G    +L+
Sbjct: 261 VARAVGYRSAGTVEFLYDPSSASFYFLEVNTRLQVEHGVTE--------EVYGI---DLV 309

Query: 290 LWMVEDAS 297
            WM+ +A+
Sbjct: 310 EWMIREAA 317


>gi|225175359|ref|ZP_03729354.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
 gi|225169111|gb|EEG77910.1| carbamoyl-phosphate synthase, large subunit [Dethiobacter
           alkaliphilus AHT 1]
          Length = 1086

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+K+  ++ + +                     + +++   KPD    
Sbjct: 29  SGTQACKALREEGYKIVLVNSNPATIMTDPEMADAVYIEPLNTDILEMIIDKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     IL+   +    +GI A   + D+   +  +   G+ V  S  
Sbjct: 89  TIGGQTALNLTVELAEKGILDKYRVELIGAGIDAIKKAEDRELFRAAIQKVGLDVPQSFA 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+     +D    I  P +++P       G  +    Q     L +    +   Q+L+E+
Sbjct: 149 VSSLAEGLDVIGEIGFPAILRPAFTLGGTGGGIAYNIQEYREILEKGLDLSPTKQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEFELEVMRDKKDNVVIICSIENFDPMGIHTGDSITVAPAQTLTDKEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREIGVDTGGSNIQFGISPQDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 96/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A  D G++   +         D D              V  ++   KP        G   
Sbjct: 597 ACRDLGYEAVMVNCNPETVSTDYDTADRLYFEPLTAEDVMNIIELEKPRGVILQFGGQTP 656

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +      ++I  T    +  A    + +          P   + +     + +   
Sbjct: 657 LKLAMTLWQAGVKILGTSPDSVDRAEDRKRFKELLDKLELKQPESVTAVSVEEALAAVQN 716

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P +++P        + +I  D ++   + ++   +    +LI++Y++G IE+    +
Sbjct: 717 IGYPVIVRPSYVLGGRAMEIIYSDDNLLDYMNRAMVASPEHPVLIDKYLEGAIEVDVDAV 776

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  +    +   +           ++  + P  I  DI +E++         +G  G
Sbjct: 777 SDGTNTLIAGIMEHIEEAGIHSG---DSACSLPPYSISSDIIEEIRVQTKALATELGVCG 833

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     +  ++ LE+N +   T     P ++   G  F +L   ++
Sbjct: 834 LMNIQYAV--KNGDIYILEVNPRASRT----IPFVSKVTGIPFAKLATRVI 878


>gi|184157603|ref|YP_001845942.1| biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|332874565|ref|ZP_08442466.1| urea carboxylase [Acinetobacter baumannii 6014059]
 gi|183209197|gb|ACC56595.1| Biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|322507909|gb|ADX03363.1| Allophanate hydrolase subunit 2 [Acinetobacter baumannii 1656-2]
 gi|323517505|gb|ADX91886.1| biotin carboxylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332737203|gb|EGJ68129.1| urea carboxylase [Acinetobacter baumannii 6014059]
          Length = 1201

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 79/254 (31%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LSDEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 307 -DLVEWMVTLASGD 319


>gi|268678831|ref|YP_003303262.1| carbamoyl-phosphate synthase, large subunit [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268616862|gb|ACZ11227.1| carbamoyl-phosphate synthase, large subunit [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 1085

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 83/300 (27%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A  L++ G++V  ++ +                       +  ++     D    
Sbjct: 29  SGTQAAKTLKELGYRVVLVNSNPATIMTDPEFADRTYIEPITPEVIARIIEKESVDAVLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +L  +     +   +         +   +     +P+     
Sbjct: 89  TMGGQTALNVAMTMHEKGMLNNVTFLGANPAAIKKGEDRQAFKEAMLKIGMDLPISAYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                  +   I  P +I+     +  G  V           +     +  +++LIE+ +
Sbjct: 149 NMEDAYVAAEKIGFPLIIRASYTLAGGGSGVAYNIDEFKELAMAGLDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDRADNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSICPNTGRMTVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 43.3 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 85/260 (32%), Gaps = 11/260 (4%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD       G        +  +   +I  T + ++  A   +
Sbjct: 616 FEPIDF-EHVRSVVEKENPDGIIVHFGGQTPLKLAKKLTVMGAKIIGTTARVIDMAEDRE 674

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K       ++   P   +       ++    I  P +++P        + ++  +  +  
Sbjct: 675 KFSKFITENNIKQPNNATATSEEEAIEKAKEIGYPVLVRPSYVLGGRAMRIVYNESELRT 734

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            + ++ S +H   +LI+Q++D   +   V          I       +  E    S +S 
Sbjct: 735 YMNEAVSVSHNSPVLIDQFLD-RAIEVDVDAICDGKDVYIGG--IMQHIEEAGIHSGDSA 791

Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             LP+    D I  +++         +G  G+    +        V+ +E+N +   T  
Sbjct: 792 CSLPSVSLSDAILAKIEAQTQQIALNLGVVGLMNIQYAIYQDD--VYMIEVNPRASRT-- 847

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P ++   G    ++   
Sbjct: 848 --VPFVSKATGMPMAKIATR 865


>gi|308177492|ref|YP_003916898.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Arthrobacter arilaitensis Re117]
 gi|307744955|emb|CBT75927.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Arthrobacter arilaitensis Re117]
          Length = 1092

 Score = 60.3 bits (144), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          LE  ++    + I A  L  D+ + K VV  CG     S++
Sbjct: 89  TLGGQTALNTAIALDKSGALEKYDVELIGANIEAIELGEDREKFKGVVERCGAESARSVI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           ++ P V++P      LG  +    + +         ++   ++L+E+
Sbjct: 149 VHTLDEAFAAVEELNYPVVVRPSFTMGGLGSGMAYNPEDLRRIAGAGLQYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDREYQKLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|323702041|ref|ZP_08113709.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532923|gb|EGB22794.1| carbamoyl-phosphate synthase, large subunit [Desulfotomaculum
           nigrificans DSM 574]
          Length = 1073

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  ++ +                       V  V+   KPD     
Sbjct: 30  GTQACRSLREEGLEVVLVNSNPATIMTDANMADKVYIEPLTPEFVTRVIRQEKPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  +Q     IL+   +    + + A   + D+   K ++      VP    +
Sbjct: 90  LGGQVGLNIALQLAERGILDEEGVTLLGTPLDAIRKAEDREMFKLMMEQIGEPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              R  ++    I  P +++P       G  + K  + +    ++    +   Q+L+E+ 
Sbjct: 150 CTVREAVEFADSIGYPVIVRPAYTLGGTGGGIAKNREQLEAVAIKGLKHSLIGQILVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +     +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDSADNCITVCNMENIDPVGVHTGDSIVVAPSQTLSDRE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNVQFALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 85/289 (29%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D              V  VLA  KP        G   
Sbjct: 584 ALREEGLEAITINNNPETVSTDFDTADRLYFEPLVVEDVLNVLAKEKPQGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            P   +             
Sbjct: 644 INLAKPLAQAGIKIIGTSVDAIDMAEDRERFDRLLTELGIPKPPGGTAFSVEQAAVIAEK 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++     +   + ++        +L+++Y+ G E     + 
Sbjct: 704 IGFPVLVRPSYVLGGRAMEIVYSQAELLAYMERAVQVTPEHPVLVDRYLAGREFEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+        ++        QA+G +G
Sbjct: 764 DGETVLI----PGIMEHIERAGVHSGDSIAVYPAQTLTQAQTDQMVDYTQRLAQALGIKG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    ++      +V+ +E+N +   T     P ++   G     L   
Sbjct: 820 LVNIQYVLHE--GQVYVIEVNPRSSRT----VPYLSKVTGIPMVNLATK 862


>gi|301794351|emb|CBW36778.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           INV104]
 gi|332203124|gb|EGJ17192.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA47901]
          Length = 1058

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|168491194|ref|ZP_02715337.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC0288-04]
 gi|183574365|gb|EDT94893.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC0288-04]
          Length = 1058

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|148989300|ref|ZP_01820680.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|225854738|ref|YP_002736250.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae JJA]
 gi|254813662|sp|C1CEM9|CARB_STRZJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147925278|gb|EDK76357.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP6-BS73]
 gi|225724177|gb|ACO20030.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae JJA]
          Length = 1058

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|328952761|ref|YP_004370095.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
 gi|328453085|gb|AEB08914.1| carbamoyl-phosphate synthase, large subunit [Desulfobacca
           acetoxidans DSM 11109]
          Length = 1080

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ GF+V  I+ + +                     V  ++   +PD    
Sbjct: 29  SGVQACKALKEEGFEVVLINSNPATIMTDPEIADRTYIEPITPEMVCKIIERERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G              IL+ L +    +       + D+   +  +++  + V  S  
Sbjct: 89  TLGGQTGLNCAVAVADTGILKRLGVEMIGASPEVIKKAEDRQLFRDAMANINLRVPTSVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++S P +++P       G  +    + +          +   ++++E+
Sbjct: 149 VRSMAEVLEAPEVLSYPIIVRPSFTLGGTGGGIAYNLEDLKELSAYGLEASMIQEVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELEVMRDVKDNVVIICSIENLDPMGVHTGDSITVAPAQTLSDREYQRMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIIREIGVETGGSNIQFAVQPQTGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/180 (16%), Positives = 57/180 (31%), Gaps = 10/180 (5%)

Query: 121 QHLISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              I  P V++P    G     IV               +      L+ +   D IE+  
Sbjct: 710 AKQIGYPVVVRPSYVLGGRAMQIVADDRVLANFMSWALEASPEHPILIDKFLEDAIEVDV 769

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +           ++  + P  +P  I KE+ R        +G
Sbjct: 770 DAIADGKTTIIGGIMEHIEEAGIHSG---DSACVLPPYSLPPAILKEITRQTQALAAELG 826

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             G+    F       +V+ LE+N +   T     P ++   G    +L   ++  A+  
Sbjct: 827 VVGLMNIQFAV--KDGQVYILEVNPRASRT----IPFVSKATGVPLAKLATKVMLGATLD 880


>gi|294055599|ref|YP_003549257.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221]
 gi|293614932|gb|ADE55087.1| urea carboxylase [Coraliomargarita akajimensis DSM 45221]
          Length = 1208

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 59/184 (32%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   +  +          +         +++   +   
Sbjct: 156 AIDIGYPVMLKSTAGGGGIGMQICVDEAELIEAYASVERLSQSHFGQGGIFLEKFVVHAR 215

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V          +  +       P      ++   +Q  A     A+ 
Sbjct: 216 HLEVQIFGDGAGQVVSLGVRDCSAQRRNQKVIEETPPVNVSDEVISGIQEAALRLATAVK 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  S + ++LE+N +     G+T +          G    +L+ WMV+ 
Sbjct: 276 YRSAGTVEFIYDNDSHEYYFLEVNTRLQVEHGVTEL--------VTGV---DLVSWMVQM 324

Query: 296 ASCL 299
           AS  
Sbjct: 325 ASGD 328


>gi|270290830|ref|ZP_06197054.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici 7_4]
 gi|270280890|gb|EFA26724.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici 7_4]
          Length = 1057

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++   +         D D            + V  ++   +PD    
Sbjct: 29  SGTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++     +               +  A   ++ RS        VP    
Sbjct: 89  TLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMKELGEPVPDSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +++P       G  ++  +  +        + +   Q+LIEQ
Sbjct: 149 ATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLTLSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G++     +     D   +     +F    +          +      ++ + ++  
Sbjct: 209 SIAGMKEIEFEVMRDHADNAIVVCNMENFDPVGIHTGDSIVYAPVQTLSDREVQE-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F  DP+  + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALRIIRALKIEGGCNVQFALDPVQNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 87/292 (29%), Gaps = 30/292 (10%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
             A+   G++   ++ +                       V  V+   +P        G 
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +         + +  T    +  A   D+       +    P   +       + + 
Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P V++P        + ++     +   +  +   +H   +LI+QY+ G E    V
Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  +        +   +  ++  +A    + + C 
Sbjct: 758 VSDGHDVVIPGIMEHIERSG---VHSGDSMAVYPAQTLSTTVQNQIVEIATKLARCLRCV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+      +V+ +E+N +   T     P ++         +    +
Sbjct: 815 GLMNVQFIV--HDEQVYVIEVNPRASRT----IPLISKVTDLPLARIATKAI 860


>gi|227328912|ref|ZP_03832936.1| putative allophanate hydrolase [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
          Length = 1201

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V      +             +      +++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMRVCYSTTELSDAFETVKRLGQNNFSDAGVFIEKYIERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +   +   A    QA+ 
Sbjct: 207 HLEVQIFGDGQGDVLALGVRDCSVQRRNQKVIEETPAPNLPDGVADALCAAAISLAQAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|303244549|ref|ZP_07330883.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanothermococcus okinawensis IH1]
 gi|302485097|gb|EFL48027.1| Carbamoyl-phosphate synthase L chain ATP-binding
           [Methanothermococcus okinawensis IH1]
          Length = 479

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G     ++ +                     + V  ++   +PD    
Sbjct: 28  SGSQACKSLREEGIYTILVNSNPATIQTDTNIADKVYLEPLHPKIVEKIIEKERPDAILP 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +         IL+   +    S +     S D+             V    +
Sbjct: 88  TMGGQTGLNLAMDLHRMGILDKYGVELLGSKVEVIETSEDRELFNKAMEEIGEPVTKSHA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P +++P       G  +   ++ +     +  +++  +Q+LI++
Sbjct: 148 VHSVEEALNAVAELGYPVIVRPAFTLGGSGGGIAHNEEELREITEKGLNYSLINQVLIDE 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   +     +       ++  +        +  ++++ ++  
Sbjct: 208 SVLGWKEYEYEVMRDAKDNCIVVCNMENMDPMG-IHTGESIVVAPSQTLSDEVHQRLRNA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G     F       +   +E+N  P ++  S     +   GY   ++  
Sbjct: 267 ALKIIKHLRIEGGCNVQFAVSKDMTEYRVIEVN--PRVSRSS--ALASKATGYPIAKIAS 322

Query: 291 WM 292
            +
Sbjct: 323 KI 324


>gi|169350664|ref|ZP_02867602.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552]
 gi|169292527|gb|EDS74660.1| hypothetical protein CLOSPI_01437 [Clostridium spiroforme DSM 1552]
          Length = 1060

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V   + +                       +  ++ + +PD     
Sbjct: 30  GTQACLALKEEGYEVVLCNCNPATIMTDTTIADKVYMEPLTLEFIAKIIRYERPDAILPG 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           + G  G +  +Q           +E+  T S  +  A   +  +      +  V      
Sbjct: 90  IGGQTGLNLAMQLEKKGILKECQVELLGTRSKSIEQAEDRELFKELCTNLNEPVLPSDIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G      ++ +   +  + + +   Q+LIE+ 
Sbjct: 150 NSIEEGIEVAKKIGYPVVLRPAFTLGGTGGGFADDEKELKSLIKHALTLSPTHQVLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + + I V   +       ++  +        +    Y  ++  A
Sbjct: 210 IKG-YKEIEYEVIRDKNDSAITVCNMENLDPVGIHTGDSIVVCPSQTLTNKEYHMLRDSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S + + +E+N  P ++  S     +  +GY    +   
Sbjct: 269 LKIIRALEIEGGCNVQFALDPKSFQYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 95/307 (30%), Gaps = 38/307 (12%)

Query: 8   ISSEREVSLSSGKACASALEDAGFKVSQIDVD---------------------RSVGLVL 46
            S+   VS          +++AG++   I+ +                       V  ++
Sbjct: 569 YSTVHAVS---------TIKNAGYEAIIINNNPETVSTDYTCSDKLYFEPLCVEDVMNII 619

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              KP      L G    +         +++  T    +  A + D         +    
Sbjct: 620 ELEKPIGVIATLGGQTAINLANPLSELGVKLIGTDCTGIERAENRDVFEKLLDKLNIPQA 679

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              ++      ++    I  P +++P        + +I  D+ +   L  +   +    +
Sbjct: 680 KGKAVTNVFDGLEVASEIGYPVLVRPSFVLGGRAMQIINNDEQLKHYLKTAVEIDEDKPV 739

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           L+++Y+ G E+    + D         +   +           + +      I   +   
Sbjct: 740 LVDKYIRGKEVEVDAICDGKDVFIPGIMELVERTGIHSG---DSISVYPTFSISEKVKNT 796

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++         IG  G+    F+ D     V+ +E+N +   T     P ++    YS  
Sbjct: 797 IKEYTTKLGLGIGIIGLFNIQFIVD-KDENVYIIEVNPRSSRT----VPFLSKVTKYSLA 851

Query: 287 ELLLWMV 293
           ++  +++
Sbjct: 852 DIATYVI 858


>gi|210623371|ref|ZP_03293768.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275]
 gi|210153632|gb|EEA84638.1| hypothetical protein CLOHIR_01718 [Clostridium hiranonis DSM 13275]
          Length = 1068

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                      ++  ++   +PD   +
Sbjct: 29  SGTQACQALKEDGKEVILVNSNPATIMTDNAMADKIYIEPLTVTTLKRIIEKERPDSILS 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
            L G       +Q      LE + +    +       + D+   K  +      V     
Sbjct: 89  TLGGQTALTLSMQLAKEGYLEKMGVKLLGADPETIDKAEDRQMFKDTMLEIGQPVIPSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +   ++            +   Q+L+E+
Sbjct: 149 VEDLDSAVEFAGKIGYPVIVRPAFTLGGSGGGIANDEEEFKKIAENGLRLSPITQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +F      ++  +        +    Y+ ++  
Sbjct: 209 CISGWKEIEFEVVRDGAGNAITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+G  G     F  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 AIKIVDAMGVEGGCNCQFALNPNSDEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/287 (14%), Positives = 102/287 (35%), Gaps = 34/287 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S   C  AL+ AGF V  I         D D +  L    L P+   NV++         
Sbjct: 572 SAVHCVWALKKAGFDVVIINNNPETVSTDFDTADRLYFEPLTPEDVMNVMNTEKPYGVVV 631

Query: 60  ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +       + + +  + +  +  A   ++            P   ++L    
Sbjct: 632 AFGGQTAINLTKFLESQGINVLGSSAESIDMAEDRERFDELLESLHIKRPQGHTVLTEDE 691

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-SSWNHGDQLLIEQYVDGI 175
            + + + +  P +++P        +I+   D+ I   +     S    + +LI++Y+ G+
Sbjct: 692 ALKAANELGYPVLMRPSYVLGGQNMIIAFGDEDIKEYMKIILKSNKKDNPILIDKYMMGV 751

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLA 234
           E+    + D    +     P    +       S +S  V P+    + + +++   +   
Sbjct: 752 EVEVDAICDGEGILI----PGIMEHIERAGVHSGDSIAVCPSWNISEKLKEKIVEYSKQL 807

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
             ++  +G+    ++      K++ +E+N       P ++ ++  P 
Sbjct: 808 AVSLKTKGLVNIQYVI--YEGKIYVIEVNPRSSRTIPYLSKITGVPM 852


>gi|6634660|emb|CAB64527.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34


>gi|291544810|emb|CBL17919.1| carbamoyl-phosphate synthase large subunit [Ruminococcus sp. 18P13]
          Length = 1064

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 95/290 (32%), Gaps = 32/290 (11%)

Query: 26  LEDAGFKVSQ-------------------IDV--DRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++                       D      V  ++   +P        G    
Sbjct: 580 LKEMGYEAIICNNNPETVSTDFDTADRLYFDPLTKEDVESIIETEQPYGVVVQFGGQTAI 639

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     + I  T +  + +A   ++            P   +++  +  + + + +
Sbjct: 640 KLTRHLADMGVNILGTSADDIDAAEDRERFDELLERCQIPRPAGHTVMTMKEAVAAANDL 699

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        +I+   D  +   +   +     + +LI++Y+ G E+    + D
Sbjct: 700 GYPVLLRPSYVLGGQNMIIAHSDSDVVEYMGIITRTMIENPVLIDKYMMGTEVEVDAICD 759

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGI 243
            +  +     P    +       S +S  V PA+    +I + +          +  +G+
Sbjct: 760 GTDFLI----PGIMEHIERAGVHSGDSISVYPAQTLSKEIRETIVEYTRRLAMELHVKGL 815

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++    + +V+ +E+N +   T     P ++   G    ++   +V
Sbjct: 816 VNIQYVV--YNNQVYVIEVNPRSSRT----VPYISKVTGIPMVDIATKLV 859



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 46/301 (15%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ +                      +V  V+   KPD   + 
Sbjct: 30  GTQACRALKQEGLEVVLINSNPATIMTDKAMADKIYIEPLTLETVKRVIEIEKPDSVLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L+   +    +       + D+   K  +   G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAAEGFLDAHNVKLLGADPETIHKAEDRQAFKDTMEKIGEPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D    I  P +++P       G  +   ++ +          +   Q+LIE+ 
Sbjct: 150 ETIEDAVDFAEEIGYPVIVRPAFTLGGTGGGIAADEEELRDIAKNGLRLSPITQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +F    +                 + Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDRKGNVITVCSMENFDPVGVHTGDSIVIAPAVTLSDRE-YQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               Q +   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 INIIQELKVEGGCNCQFALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVATR 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|293365151|ref|ZP_06611868.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|307703689|ref|ZP_07640630.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|291316601|gb|EFE57037.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
 gi|307622524|gb|EFO01520.1| carbamoyl-phosphate synthase, large subunit [Streptococcus oralis
           ATCC 35037]
          Length = 1058

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAASIGYPVIVRPAFTLGGTGGGMCANEEELREISENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|262371626|ref|ZP_06064905.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
 gi|262311651|gb|EEY92736.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
          Length = 652

 Score = 60.3 bits (144), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 37/230 (16%), Positives = 73/230 (31%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  V      D      +G   E+           I +      A  L   K  SK  +
Sbjct: 66  NIIEVCKKTGADAVHPG-YGFLSENTDFAQACSDHGITFIGPNAAAIHLMGSKRLSKIAM 124

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVP  P    +R  ++        I  P ++K   GG   G+ ++ +   +   L  
Sbjct: 125 IEAGVPCVPGYEGDRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSADLLEALKT 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S         E  ++   +    +       T             ++          P
Sbjct: 185 ARSEAENAFGSGELIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAP 244

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +  ++ +++   A  A +A    G    +FL D  S + ++LE+N +
Sbjct: 245 CPVMTPELRQQMGEAAVAAAKACDYIGAGTVEFLLD-HSGEFYFLEMNTR 293


>gi|38505138|gb|AAR23110.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Emericella nidulans]
 gi|40388397|gb|AAR85468.1| 3-methylcrotonyl-CoA carboxylase biotin-containig subunit
           [Emericella nidulans]
          Length = 723

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 50  EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK  SK ++++ GVP
Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKRCSKHIMTAAGVP 164

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             PS        +        I  P +IK +KGG   G+ + +  +     L        
Sbjct: 165 CVPSYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +   G    +F+FD  + + F++E+N +
Sbjct: 285 ATRKDIWAKARSAALA----VRYEGAGTVEFIFDNDTGEFFFMEMNTR 328


>gi|322372453|ref|ZP_08046989.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C150]
 gi|321277495|gb|EFX54564.1| carbamoyl-phosphate synthase, large subunit [Streptococcus sp.
           C150]
          Length = 1059

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLHQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFASKIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D      +  +   P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALIDLNIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KGETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860


>gi|258542492|ref|YP_003187925.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01]
 gi|256633570|dbj|BAH99545.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-01]
 gi|256636629|dbj|BAI02598.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-03]
 gi|256639682|dbj|BAI05644.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-07]
 gi|256642738|dbj|BAI08693.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-22]
 gi|256645793|dbj|BAI11741.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-26]
 gi|256648846|dbj|BAI14787.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-32]
 gi|256654890|dbj|BAI20817.1| urea amidolyase [Acetobacter pasteurianus IFO 3283-12]
          Length = 1179

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V   +  +       S     +      +++       
Sbjct: 147 ATRIGYPVMLKSTAGGGGIGMQVCHNETELRDCFAAVSRMGGNNFGDARVFLEKFIACAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +        +  +         L+  +       PA    D  ++  +  A     A+ 
Sbjct: 207 HVEVQIFGDGKGNILTLGERDCSLQRRNQKVIEETPAPGLSDTTRQGLREAARALGAAVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA------GYSFRELLLWMV 293
                  +F++D  S + ++LE+N +              +       G    +L+ WMV
Sbjct: 267 YESAGTVEFIYDTESGEFYFLEVNTR----------LQVEHCVTEEVFGI---DLVEWMV 313

Query: 294 EDA 296
             A
Sbjct: 314 RQA 316


>gi|330837670|ref|YP_004412311.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides
           DSM 17374]
 gi|329749573|gb|AEC02929.1| carbamoyl-phosphate synthase large subunit [Spirochaeta coccoides
           DSM 17374]
          Length = 1081

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 106/313 (33%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQAVQALREEGYEVVLVNPNPATVMTTPGIADAIYLEPLTVPYVTDIIARERPDAILT 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +       + IL+   +    +GI +  L+ D+   K++++S G+    S+ 
Sbjct: 89  TMGGQTGLNLTIELHKKGILDTYGVQVIGAGINSIELAEDRRLFKEIITSLGLESARSVT 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V               P +++P      +G  +I+ ++     +  +   +   ++L+E+
Sbjct: 149 VKSVAEAEAFKKIVGLPLILRPSFTLGGMGGGIIRSEEEFHPAMKHALEASPVGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +   +         K     
Sbjct: 209 SLLGWKEFELEVMRDKNDNAIIVCSIENVDPMGVHTGDSITVAPIQTLSDQAYQKMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA- 279
             +        G S   F   P + ++  +E+N  P ++  S        FP     A  
Sbjct: 269 IDILRAIGVDCGGSNVQFAVQPGTGRMVVIEMN--PRVSRSSALASKATGFPIARCSAKL 326

Query: 280 YAGYSFRELLLWM 292
             G++  E+L  +
Sbjct: 327 AIGFTLDEVLNEI 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 91/291 (31%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL   G +   I         D + S  L +  L P+    VL             G   
Sbjct: 590 ALRKLGHRTIMINSNPETVSTDFNISDRLYVEPLTPEHVLRVLELEKTRTVVLQLGGQTP 649

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            + +   +   +++  T    ++ A    K  +             +       M   + 
Sbjct: 650 LNMMDTLVAHGVKVVGTSPADVSIADDRGKFAALIRKLGLHQSENRTAYSPSEVMTHANE 709

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + +   D ++   L    + +    LL++++++          
Sbjct: 710 VGYPVLLRPSHVLGGRNMFIAFDDDAVRGFLDGGVNVSSASPLLVDKFLEDAFEYDL--D 767

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
             S   +               +S  ++    P K   ++   +++ A     A+  +G 
Sbjct: 768 AVSDGTSLYIGGILQHIEAAGIHSGDSAAVFPPYKSTPEVLNAMRKAALDLACALSIKGF 827

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               F       +++ +E+N +   T     P ++  +G    E+ + + E
Sbjct: 828 MNIQFAV--KDGQLYVIEVNPRASRT----VPFISKASGVDLVEVAVRVWE 872


>gi|193084131|gb|ACF09797.1| carbamoyl-phosphate synthase large chain [uncultured marine group
           III euryarchaeote SAT1000-53-B3]
          Length = 1062

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 100/303 (33%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C SAL +AG  V  ++ +                      S+  ++   KPD    
Sbjct: 22  SGSQCCSALREAGHTVVLVNSNPATIQTDPETADIVYIEPMTVESLTRIIEKEKPDAIIP 81

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +  +       L+   +    + + +  ++ D+   R K +     V     
Sbjct: 82  GMGGQTGLNLTIDLHKAGVLQKHGMKILGTSLKSIEMAEDRNLFRKKMIEIGEPVAESGI 141

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     +  P V++P       G  +   +  + +   +  + +   QLLIE+
Sbjct: 142 AQTINQSLKLAEKLDYPVVVRPAFTLGGTGGGIAYNENELEIIAGRGLTLSPVKQLLIEE 201

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229
            + G       +     D   I     +         +  S  V PA    D  Y++++ 
Sbjct: 202 SILGWLEFEFEVLRDEDDNAIIVCSMENLDPM--GVHTGESIVVAPALTLPDTAYQKLRT 259

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    +++G  G     F ++  +     +E+N  P ++  S     +   G     + 
Sbjct: 260 SALKVVRSLGIVGGCNVQFAYNSKTEDYILIEVN--PRVSRSS--ALASKATGVPIARIA 315

Query: 290 LWM 292
             +
Sbjct: 316 SML 318



 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 48/293 (16%), Positives = 95/293 (32%), Gaps = 37/293 (12%)

Query: 24  SALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A+  AG++   +         D D             SV  +L   KP      L G  
Sbjct: 574 QAVRKAGYEAVVVNNNPETVSTDFDASDRLYFEPLDAESVFEILDAEKPYGIILQLGGQT 633

Query: 63  GEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +   +             I  T    + +A    K       +   +P       +  
Sbjct: 634 AVNLASEVEAHIKKEKLKTRILGTKVRDMDAAEDRGKCGELMRKAGIKMPKWAIAKSSDE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
            +     I  P +++P       G+ ++  D+ +   L   S       +L++++++G I
Sbjct: 694 VITRAEEIGFPVLVRPSFVLGGRGMEIVHNDKQLKKYLRLESHATPKRPVLVDKFLEGAI 753

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           EL   ++ D    V    + + +       +S  ++  + P  I   +  EV +++    
Sbjct: 754 ELDVDLISDGKKVVIGAIMEQIEMAG---VHSGDSACVMPPQSISKKLEDEVIKISKKVA 810

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + +   G +            VF LEIN +   T     P ++   GY    L
Sbjct: 811 KKMKIIGAANLQLAI--KDSNVFLLEINPRASRT----LPFVSKSTGYPLARL 857


>gi|126696383|ref|YP_001091269.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126543426|gb|ABO17668.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 1098

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 46/315 (14%), Positives = 101/315 (32%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL +AG+++  I+ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEIVLINSNPASIMTDPEVASKTYIEPLTPEIVSQIILREKPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   I    + + A   + D+   K+ +    V VCPS +
Sbjct: 89  TMGGQTALNLAVKLSESNFLKQNNIELIGADLRAINKAEDRQLFKESMEKINVNVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +    + S P +I+P      +G  +    +            +  +Q+LIE
Sbjct: 149 ASNLDEAIEVSRKICSYPLIIRPAFTLGGVGGGIAFNLEEFVELCKSGLEESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFAINPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339


>gi|226953227|ref|ZP_03823691.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
 gi|226836017|gb|EEH68400.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
          Length = 1201

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 22/255 (8%)

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCP 109
           N +H  +G         +L E             + A  L           +   +P   
Sbjct: 76  NAIHPGYGFLSENAEFCDLCESQGIAFIGPNSAQMRAFGLKHTARELAIEANVPLLPGSQ 135

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P ++K   GG  +G+ ++   + +       S     +     
Sbjct: 136 LLADEAEALVEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKDAFTTVSYLAQANFKDAG 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQ 228
            Y++        +        +  V         ++  +       PA    D  +  +Q
Sbjct: 196 LYLEKFVQNARHIEVQIFGDGQGQVLALGERDCSVQRRNQKVIEETPAPHLNDQQRSYIQ 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284
            +A    Q++  R     +F+ D  ++  ++LE+N +     G+T            G  
Sbjct: 256 TVAIQLMQSVNYRSAGTVEFVMDTDTQDFYFLEVNTRLQVEHGVTE--------QVYGV- 306

Query: 285 FRELLLWMVEDASCL 299
             +L+ WMV  AS  
Sbjct: 307 --DLVEWMVTLASGD 319


>gi|50954778|ref|YP_062066.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp.
           xyli str. CTCB07]
 gi|50951260|gb|AAT88961.1| carbamoylphosphate synthase, large chain [Leifsonia xyli subsp.
           xyli str. CTCB07]
          Length = 1093

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D D              +  ++A  KP+    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYVEPITWEVIETIIAKEKPEAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQ--VVSSCGVPVCPS 110
            L G    +         +LE   +    +   A     D+   K   + +   V     
Sbjct: 89  TLGGQTALNEAMQLHEHGVLEKYGVELIGAKFEAIQKGEDRQIFKDLVIAAGADVARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P      LG       + +   +      +   ++L+E+
Sbjct: 149 AHTVEEALAFADDLGYPLVVRPSFTMGGLGSGFAYTSEELRRIVGDGIHQSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D T +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP   +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIRAVGVDTGGCNIQFAVDPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|78221881|ref|YP_383628.1| carbamoyl phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
 gi|78193136|gb|ABB30903.1| carbamoyl-phosphate synthase large subunit [Geobacter
           metallireducens GS-15]
          Length = 1066

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ +                      ++  ++   +PD    
Sbjct: 29  SGTQACKALRKLGYRIVLVNSNPATIMTDPGMADATYIEPLNVDTLTEIIRKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G         +     L        G+   A+   + R     +   + +  +    
Sbjct: 89  NLGGQTGLNLSSALAQAGVLDRYGVRVIGVNLDAIKRGEDRETFKETMTRLGIETARSEI 148

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TM+        I  P VI+P       G       +     + +  + +   Q+L+E+
Sbjct: 149 ATTMEGALDVVSRIGLPVVIRPAYTMGGTGGGFAYNMEEFRTIVARGLAASPVSQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G E     +   + +         +  +  +       T  +   I  ++   +Q  
Sbjct: 209 SVLGWEELELEVVRDAKNQKITVCFIENVDAMGVHTGDSYCTAPM-LTISSELQARLQDY 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A+    AI   G +   F  DP + +V  +EIN +   T  S     +   G+    ++ 
Sbjct: 268 AYRIVDAIEVIGGTNVQFAHDPKTGRVVVIEINPR---TSRSS-ALASKATGFPIA-MVS 322

Query: 291 WMV 293
            ++
Sbjct: 323 SLL 325



 Score = 42.2 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 84/284 (29%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  + A  KP+       G   
Sbjct: 580 ALREAGYETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLSIHAKEKPEGVVVQFGGQTP 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V+     + I  T    +  A    +            P           +     
Sbjct: 640 LNIAVELEAAGVRIIGTTPETIDLAEDRQRFARVMTELGIPQPESGMASTLDEALAVAGR 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+  ++ +   + ++   +    +LI+++++          
Sbjct: 700 IDYPLMVRPSYVLGGRAMEVVHDEEMLREYVTKAVDVSPERPILIDRFLEN---AIEAEA 756

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T+  VP    +       S +S  V+P       + +           A+G  G
Sbjct: 757 DAISDGTDAFVPAVMEHIELAGVHSGDSACVIPPVSIPQKHIDTIDEYTRKIAVAMGVVG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +        V+ LE N +   T     P ++        
Sbjct: 817 LMNIQYAI--ADNTVYILEANPRASRT----VPLVSKVCNIPMP 854


>gi|328946949|ref|YP_004364286.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
 gi|328447273|gb|AEB12989.1| Diaminopimelate epimerase [Treponema succinifaciens DSM 2489]
          Length = 1411

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 33/302 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++                     +  ++  ++   KPD   + 
Sbjct: 30  GSQACKALKEQGLEVVLVNSNPATLMTDHTMADQIYIEPLIPETIQRIIEKEKPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV---SSCGVPVCPS 110
           L G  G    ++      LE   +    +       + D+   K  +       +P    
Sbjct: 90  LGGQTGLTLSMELAKSGFLENHGVKLLGAKPETIDKAEDRQMFKDTMLAIGEPCIPSKVV 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                     ++ I  P +I+P       G  ++  D+ +          +   Q+L+E+
Sbjct: 150 TTYEDALDFVKNEIGYPAIIRPAFTLGGTGGGIVHNDEEMDEIAHNGLHRSPIHQILVEK 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S           +F    +              +    Y+ ++  
Sbjct: 210 CISGWKEIEFEVMRDSAGNVLTVCSMENFDPVGVHTGDSIVIAPT-VTLSDKEYQMLRSA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     ++G  G     F  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 269 ALNIISSLGMEGGCNCQFALNPNSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 324

Query: 291 WM 292
            +
Sbjct: 325 LI 326



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/289 (14%), Positives = 93/289 (32%), Gaps = 30/289 (10%)

Query: 21  ACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GN 61
            C  AL+  G+ V  I         D D S  L    L P+   +V++            
Sbjct: 607 QCVWALKRLGYDVVTINNNPETVSTDFDTSDRLYFEPLTPEDVMSVVNTEKPVGVVVAFG 666

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 +   L+   I    +   +  L+ D+ R +++     +     + +       +
Sbjct: 667 GQTAIKLTKFLDSQGIRILGTSADSIDLAEDRERFEELCEKLHINRPKGLTIFTEEEALE 726

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +++P        +I+   D  +   +    +    + +LI+QY+ G EL  
Sbjct: 727 ATQKLGYPVLLRPSYVLGGQNMIIAFNDDDVKEYMKIILAQGIENPVLIDQYMMGTELEV 786

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +        S           I  +      R   LA   +G
Sbjct: 787 DAICDGKDILIPGIMEHIERTGIHSGDSIAVYPSWNLNDILREKIINQSRELALA---LG 843

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    +L    +  ++ +E+N +   T     P ++        +L
Sbjct: 844 TKGLVNIQYLI--YNNDLYIIEVNPRSSRT----VPYISKVTNVPMVDL 886


>gi|295396982|ref|ZP_06807101.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
 gi|294974782|gb|EFG50490.1| carbamoyl-phosphate synthase, large subunit [Aerococcus viridans
           ATCC 11563]
          Length = 1059

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL++ G++V  I+ + +                     V  +L   KPD     
Sbjct: 30  GTQACFALKEEGYEVVLINSNPATIMTDRKMADKIYIEPITEEMVSKILYEEKPDAILPS 89

Query: 58  LHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            +E+  T+   +  A   +  ++        VP    +
Sbjct: 90  LGGQTGLNMALTLDASGILEELDIELIGTNLKAIDQAEDRELFKNLMTSIGQPVPDSTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + +   S+   +      +   Q LIE+ 
Sbjct: 150 HTVDEAVDFANEIGYPIIVRPAFTMGGSGGGICEDQASLEKIVKNGLILSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                   +   + +     ++  +        +       +  +A
Sbjct: 210 IAG-YQEIEYEVMRDGAGVAKVITSMENFDPVGVHTGDSIVFAPNQSLDQAQNDMLADVA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+   G         P +++ + +E+N  P ++  S     +   G+    +   
Sbjct: 269 IKIIQALEIEGGCNVQLALKPDTQEYYIIEVN--PRVSRSS--ALASKATGFPIARVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 99/297 (33%), Gaps = 33/297 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+ AG++   I+ +                      +V  ++   +P        G
Sbjct: 579 CVKALQKAGYEALIINSNPETVSTDFSISDKLFFEPVTFENVMAIIEREQPIGVMIQFGG 638

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFT 117
                  +   L+   I    + +     + D+   +Q ++   +        + +    
Sbjct: 639 Q--TAINLANDLKEAGIQILGTSVEDMNRAEDRKLFEQALTQLNIAQPEGDTALSLEEAL 696

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              + +   P +++P       G+ V+  ++++   +  + + +H  +      +D    
Sbjct: 697 AIPEKIGGYPVLVRPSFVLGGRGMEVVYDEENLTTYMNDALAESHKLKQEAPILIDHYVQ 756

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
              V  DA  D T++ +P    +       S +S  V P +     +  ++         
Sbjct: 757 GIEVEVDAICDGTDVFIPGIMEHIEAAGVHSGDSMAVFPTQRLSQAVIDQIIDETIKIGN 816

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +G  G+    F+    + KVF +E+N +   T     P ++        ++   ++
Sbjct: 817 GLGTIGMVNIQFIV--ENDKVFIIEVNPRASRT----VPFLSKVTDIEIAQIATNVI 867


>gi|242053347|ref|XP_002455819.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor]
 gi|241927794|gb|EES00939.1| hypothetical protein SORBIDRAFT_03g025720 [Sorghum bicolor]
          Length = 1171

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D D              V  ++   +PD    
Sbjct: 97  SGTQACKALAEEGYEVVLVNSNPATIMTDPDLAHRTYIGPMTPPLVERIIDAERPDALLP 156

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+ L +    + + A   + D+   KQ +   G+   PS +
Sbjct: 157 TMGGQTALNLAVSLADSGALDRLGVRLIGASLPAIRAAEDRQLFKQAMDRIGLKTPPSGI 216

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        +   P +++P       G  +               + +H  Q+L+E
Sbjct: 217 GTTLEECLAIAEDIGEFPLIVRPAFTLGGTGGGIAYNRAEFEDICRAGLAASHTQQVLVE 276

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 277 KSLLGWKEYELEVMRDMADNVVIICSIENIDPMGVHTGDSITVAPAQTLTDKEYQRLRDY 336

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 337 SVAIIREIGVECGGSNVQFAVNPADGEVMIIEMN--PRVSRSS--ALASKATGFPIAKMA 392

Query: 290 LWM 292
             +
Sbjct: 393 AKL 395


>gi|210610312|ref|ZP_03288341.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787]
 gi|210152542|gb|EEA83548.1| hypothetical protein CLONEX_00531 [Clostridium nexile DSM 1787]
          Length = 1057

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 39/286 (13%), Positives = 93/286 (32%), Gaps = 29/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
             ++ AG++   I+ +                       V  ++   +PD     L G  
Sbjct: 576 QTIQSAGYEAIIINNNPETVSTDYTCSDKLYFEPLCVEDVMNIIELEQPDGVIATLGGQT 635

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    +  A + D             P   ++      + + +
Sbjct: 636 AINLAEPLRARGVNIIGTDCDAIERAENRDSFEKLLASLHIPQPKGQAVTSIEDGIRAAN 695

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++ K++++   L  +   N    +L+++Y+ G E+    +
Sbjct: 696 EIGYPVLVRPSFVLGGRAMQIVAKEEALRNYLKTAVEINEEKPVLVDKYIRGKEVEVDAV 755

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  + +      I   + + +          IG  G
Sbjct: 756 CDGKNVFVPGIMELVERTG---VHSGDSISIYPTHSISEKVKETILDYTQKLGLGIGIIG 812

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+ D     V+ +E+N +   T     P ++   GYS  ++
Sbjct: 813 LFNIQFIVDEFEN-VYIIEVNPRSSRT----VPFLSKATGYSLADI 853



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V   + +                       V  ++ + +PD     
Sbjct: 30  GTQACLALKEEGYEVVLCNSNPATIMTDTSIADKVYMEPLTLEYVAKIVRYERPDAILPG 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110
           + G  G +  +Q   +   +    + +L + +S  +        +         V     
Sbjct: 90  IGGQTGLNLAMQLE-KKGILAECRTELLGTKISSIERAEDRELFKELCEELGEPVLPSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G      ++ +   +  + S +   Q+LIE+
Sbjct: 149 ASSIEEGLKVAEKIGYPLVLRPAFTLGGTGGGFADNEEELVALMKNALSLSPVHQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I +   +       ++  +        +    Y+ ++  
Sbjct: 209 SIKG-YKEIEYEVMRDSNDTAITICNMENLDPVGIHTGDSIVVCPSQTLTNKEYQMLRYS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     F  DP S + + +E+N  P ++  S     +  +GY    +  
Sbjct: 268 ALKIIRALGIEGGCNVQFALDPHSFQYYLIEVN--PRVSRSS--ALASKASGYPIARVSA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|150400482|ref|YP_001324248.1| carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus
           aeolicus Nankai-3]
 gi|150013185|gb|ABR55636.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanococcus
           aeolicus Nankai-3]
          Length = 479

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 33/294 (11%), Positives = 93/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFN 56
           SG     +L + G     ++        D+ +                ++   +PD    
Sbjct: 28  SGSQACKSLREEGIYTILVNSNPATIQTDKDIADKVYLEPLNPKIVEKIIEKERPDAILP 87

Query: 57  VLHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G  G +    +  +  L +      G     +   + R     +   +    +    
Sbjct: 88  TMGGQTGLNLAVDLHRMGILEKYGVKLLGSTVDVIETSEDRELFNKAMDEIGEPVTKSYA 147

Query: 115 RFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             +++        +  P +++P       G  +   ++ +   + +  +++  +Q+LI++
Sbjct: 148 VESIEKALEAVEELGYPVIVRPAFTLGGTGGGIPYTEEELRDIVEKGLNYSMINQVLIDE 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +       ++  +        +   +++ ++  
Sbjct: 208 SVLGWKEYEYEVMRDAKDNCIIVCNMENIDPMG-IHTGESIVVAPSQTLSDKMHQRLRNA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           A    + +   G     F   P   +   +E+N  P ++  S     +   GYS
Sbjct: 267 ALKIIRHLNIIGGCNVQFSVSPDDSEYRVIEVN--PRVSRSS--ALASKATGYS 316


>gi|294651512|ref|ZP_06728824.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC
           19194]
 gi|292822600|gb|EFF81491.1| acetyl-CoA carboxylase subunit A [Acinetobacter haemolyticus ATCC
           19194]
          Length = 649

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 72/230 (31%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++         D      +G   E+           I +      A  L   K  SK  +
Sbjct: 67  NIIEACKKTGADAVHPG-YGFLSENTDFAQACNDHGITFIGPNAAAIHLMGSKRLSKIAM 125

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVP  P    +R  ++        I  P ++K   GG   G+ ++ +   +   L  
Sbjct: 126 IEAGVPCVPGYEGDRQDIEYLAEQAEKIGFPLMVKASAGGGGRGMRLVHQSTDLLEALKT 185

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S         E  ++   +    +       T             ++          P
Sbjct: 186 ARSEAENAFGSGELIIEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAP 245

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +  ++ +++   A  A +A    G    +FL D  S + ++LE+N +
Sbjct: 246 CPVMTPELRQQMGEAAVAAAKACDYIGAGTVEFLLD-QSGEFYFLEMNTR 294


>gi|323485581|ref|ZP_08090925.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum
           WAL-14163]
 gi|323692929|ref|ZP_08107151.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673]
 gi|323401099|gb|EGA93453.1| hypothetical protein HMPREF9474_02676 [Clostridium symbiosum
           WAL-14163]
 gi|323503012|gb|EGB18852.1| carbamoyl-phosphate synthase [Clostridium symbiosum WAL-14673]
          Length = 1070

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 103/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +              DV          +  ++   +PD    
Sbjct: 28  SGTQACKALKNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLTQIIDKERPDALLP 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +   +     +L+   +      + A     D++  K  + S G+ +  S +
Sbjct: 88  NLGGQSGLNLCSELAAAGVLDKYNVKVIGVQVDAIERGEDRIEFKHAMESLGIEMARSEV 147

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 148 AYTVEHALEIADKLGYPVVLRPAYTMGGEGGGLVYNVEELKTVCARGLQASMVGQVLVEE 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   + +         +       ++  +        I  ++ K +Q  
Sbjct: 208 SILGWEELELEVVRDAKNNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKRLQEK 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           ++   +AI   G +   +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 267 SYKIVEAIEVIGGTNVQWAHDPKTDRDIVIEINPR---TSRSS-ALASKATGFPIA-LVS 321

Query: 291 WMV 293
            M+
Sbjct: 322 AML 324



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 101/323 (31%), Gaps = 47/323 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL++ GF+   +         D D S 
Sbjct: 553 IMILGGGPN-------RIGQGIEFDYCCVHAAIALKELGFETIIVNCNPETVSTDYDTSD 605

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L  +   ++ H            G    +         + I  T    +  A  
Sbjct: 606 KLYFEPLTLEDVLSIYHKEKPLGVIAQFGGQTPLNLAADLKKYGVTILGTTPETIDMAED 665

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D  R         +P     +     +   + I  P +++P       G+ V+  D+++
Sbjct: 666 RDLFRDMMDKLQIPMPESGMAVNVDEALVIANRIGYPVMVRPSYVLGGRGMEVVHDDEAL 725

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + ++        +LI++++           DA  D   + VP    +       S +
Sbjct: 726 TYYMKEAVGVTPDRPILIDRFL---HHATECEADAISDGENVFVPAVMEHIELAGIHSGD 782

Query: 211 STHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S  +LP++    D    ++       + +   G+    +       +V+ LE N +   T
Sbjct: 783 SACILPSRNLTKDQVDTIRDYTSRIAKEMHVVGLMNMQYAI--EDGEVYVLEANPRASRT 840

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
                P ++        +L   +
Sbjct: 841 ----VPLVSKVCNIKMVKLATDI 859


>gi|6634639|emb|CAB64513.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634657|emb|CAB64525.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634663|emb|CAB64529.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634681|emb|CAB64533.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634687|emb|CAB64537.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34


>gi|123968578|ref|YP_001009436.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123198688|gb|ABM70329.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 1098

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/315 (13%), Positives = 99/315 (31%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL +AG++V  I+ + +                     V  ++   KPD    
Sbjct: 29  SGTQACKALRNAGYEVVLINSNPASIMTDPEIASKTYIEPLTPEIVSQIILREKPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
            + G    +  V+              I A   +++K   +++       +  ++     
Sbjct: 89  TMGGQTALNLAVKLSESDFLKENNVELIGADLRAINKAEDRKLFKESMEKINVNVCPSGI 148

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +     S+ + S P +I+P      +G  +    +   +        +  +Q+LIE
Sbjct: 149 ASNLDEAVEVSKKISSYPLIIRPAFTLGGVGGGIAFNLEEFVVLCKSGLEESPSNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +    
Sbjct: 209 KSLIGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQRLRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLKIIREVGVETGGSNIQFALNPSNGEVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLSVGYTLDEIIND 339


>gi|225027058|ref|ZP_03716250.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353]
 gi|224955522|gb|EEG36731.1| hypothetical protein EUBHAL_01314 [Eubacterium hallii DSM 3353]
          Length = 1188

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 85/282 (30%), Gaps = 37/282 (13%)

Query: 19  GKACASALEDAGF--------------------KVSQIDVDR----------SVGLVLAH 48
                 AL + G                     +   ++ D+          ++  +   
Sbjct: 20  AIRVFRALSELGIGSVAVYSKEDRYALFRTKADEAYPLNPDKGPVDAYLDIPTIIRIAKE 79

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            K D      +G   E+          +I +    + A  +  DK+ +K+      VP+ 
Sbjct: 80  KKVDAIHPG-YGFLSENPEFAEACRKNDIVFIGPNVEAMNIMGDKISAKRAAEESKVPII 138

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 I      M     I  P ++K   GG   G+ +++  + +     +S + +   
Sbjct: 139 DGSDFIIHDVDTAMKIADEIGYPVMLKASNGGGGRGMRIVQSQEEMEEAFEKSRNESKRV 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
               + +++   +    +    L      +         L+  +       P   I  + 
Sbjct: 199 FGEAKLFIEKYLIHPKHIEVQILGDNYGNIVHLYDRDCSLQRRNQKVIEFAPAWSISEET 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++   A    + +G       +FL D      +++E+N +
Sbjct: 259 RKKILDSAKRLARRVGYTNAGTMEFLVDEEEH-PYFIEMNPR 299


>gi|157737613|ref|YP_001490296.1| carbamoyl phosphate synthase large subunit [Arcobacter butzleri
           RM4018]
 gi|157699467|gb|ABV67627.1| carbamoylphosphate synthase, large subunit [Arcobacter butzleri
           RM4018]
          Length = 1081

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+ +                       V  ++     D    
Sbjct: 29  SGTQATKTLKELGYRVVLINSNPATIMTDPEFADKTYIEPITEEVVAKIIEKENIDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G            + +LE ++    H   +                   +P   +  
Sbjct: 89  TMGGQTALNVATSMYEKGMLEGIKFLGAHPDSIKKGEDRHLFNEAMKKIGMDLPKSANAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P + +     +  G  V    +   +        +  +++ I + +
Sbjct: 149 TLEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKVLAASGIEASPINEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQDMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD    ++H        +   L         +      L+ D
Sbjct: 611 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTKAGAKIIGTTAEVIDLAED 667

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V   G+      + +     ++    I  P +++P       G+ ++     +
Sbjct: 668 RKKFSAFVEKIGLLQPENGTAVEVTEAIEIAEKIGYPVLVRPSFVLGGRGMKIVYSTDEL 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++ S ++   +LI++++D  IEL    + D         +   +           
Sbjct: 728 KQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCISDGKEVYIGGIMQHIEEAGIHSG---D 784

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I  D+ KE++         +G  G+  + +       +++ +E+N +   T
Sbjct: 785 SACSLPPVSISDDLIKELETKTKEMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 843 ----VPFVSKATGMPLAKVATR 860


>gi|269215538|ref|ZP_06159392.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC
           700122]
 gi|269131025|gb|EEZ62100.1| carbamoyl-phosphate synthase, large subunit [Slackia exigua ATCC
           700122]
          Length = 1091

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 91/313 (29%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFN 56
           SG      L+D G++V  ++                    +       ++   +PD    
Sbjct: 29  SGTQACKVLKDEGYEVVLVNSNPATIMTDPALVDRTYVEPITPDFIERIIEAERPDALLA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G    +         +LE   +      + A     D+    + ++     +     
Sbjct: 89  TIGGQTALNAAVSLARSGVLERFGVELIGCDLPAIETGEDRKLFAEAMADIGVEIARSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++P       G  +      +   + Q    +   ++L+E+
Sbjct: 149 AYALDDALALAESIGYPVVLRPSFTLGGAGGGIAHDANELRDIVSQGLELSPTGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +   +     I     +     +      +         ++  +     
Sbjct: 209 SIEGWKEYEMEVMRDTAGNGIIVCSIENLDPMGVHTGDSITVAPAQTLSDIEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G S   F  +P   ++  +E+N  P ++  S            + AA  
Sbjct: 269 LAILERVGVETGGSNVQFAVNPTDGRLIVIEMN--PRVSRSSALASKATGFPIAKAAARL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AVGYTLDEIMNDI 339


>gi|254780268|ref|YP_003064681.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
 gi|254039945|gb|ACT56741.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 443

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 85/255 (33%), Gaps = 32/255 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
           +G   E+     ILE   I +         +  DK+ +K+     G+PV P    +    
Sbjct: 82  YGFLSENAKFAEILEDHHIKFIGPSSEHIKIMGDKITAKKTAQQLGIPVVPGSGEVYPHT 141

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQY 171
            M     I  P ++K   GG   G+ +   +  +   + Q+ S     + +    + +  
Sbjct: 142 AMPIAKEIGFPVLVKASAGGGGRGMRIAYSENDLSEAIDQARSEALAAFGNDAVYIEKYL 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            +   +   + GD   +                K      + V+ A+   +I +      
Sbjct: 202 ENPRHIEVQIFGDGMGNAIHFGERDCSVQRRNQKIWEEAHSPVISAQDRTEIGE----TC 257

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSF 285
             A + I  RG    +FL+   + + +++E+N +              +       G   
Sbjct: 258 VKAMKKIDYRGAGTIEFLY--ENGQFYFIEMNTR----------LQVEHPVTEAITGI-- 303

Query: 286 RELLLWMVEDASCLR 300
            +L+   +  AS  R
Sbjct: 304 -DLVHEQIYVASENR 317


>gi|6634645|emb|CAB64517.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634648|emb|CAB64519.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 34


>gi|304386350|ref|ZP_07368683.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304327707|gb|EFL94934.1| carbamoyl-phosphate synthase, large subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 1057

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++   +         D D            + V  ++   +PD    
Sbjct: 29  SGTQACLSLKELGYQTVLVNSNPATIMTDTDVADKVYIEPLTRQFVSQIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++     +               +  A   ++ RS        VP    
Sbjct: 89  TLGGQQGLNMAMELAESGILKELNIELLGTKLDAIDQAEDRERFRSLMKELGEPVPDSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +++P       G  ++  +  +        + +   Q+LIEQ
Sbjct: 149 ATTVAEAVDFAKQSGFPVIVRPAFTMGGTGGGIVNDETELRKIAANGLTLSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G++     +     D   +     +F    +          +      ++ + ++  
Sbjct: 209 SIAGMKEIEFEVMRDHADNAIVVCNMENFDPVGIHTGDSIVYAPVQTLSDREVQE-LRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A L  +A+   G     F  DP+  + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALLIIRALKIEGGCNVQFALDPVQNRYYVIEVN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 87/292 (29%), Gaps = 30/292 (10%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
             A+   G++   ++ +                       V  V+   +P        G 
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEEVLNVIELEQPKGVIVQFGGQ 637

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +         + +  T    +  A   D+       +    P   +       + + 
Sbjct: 638 TAINLAEALADHGVPVLGTAVEDVNRAEDRDEFNQLITENQFRQPEGRTATTVPAAITAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P V++P        + ++     +   +  +   +H   +LI+QY+ G E    V
Sbjct: 698 NQIGYPVVVRPSYVLGGRAMEIVHNQAELENYMHTAVQVSHQHPVLIDQYLVGTECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  +        +   +  ++  +A    + + C 
Sbjct: 758 VSDGHDVVIPGIMEHIERSG---VHSGDSMAVYPAQTLSTTVQNQIVEIATKLARCLRCV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G+    F+      +V+ +E+N +   T     P ++         +    +
Sbjct: 815 GLMNVQFIV--HDEQVYVIEVNPRASRT----IPLISKVTDLPLARIATKAI 860


>gi|268611000|ref|ZP_06144727.1| urea carboxylase [Ruminococcus flavefaciens FD-1]
          Length = 990

 Score = 59.9 bits (143), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 60/182 (32%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +GI + +  + +             +      +V+       
Sbjct: 147 AERIGYPVMLKSTAGGGGIGIRICENAEELEDSFDNVRHLAENNFNDGGVFVEKYIKIAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA    + + +++ R A    +  G
Sbjct: 207 HVEVQIFGNEYGETAVIGERDCSVQRRNQKVVEECPAPCLSESVRQDMFRAAKSLAKTSG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D    K ++LE+N +     G+T            G    +L+  M+++
Sbjct: 267 YRNAGTVEFLYDASCEKFYFLEVNTRLQVEHGITE--------EVYGV---DLVEMMIKE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|94987381|ref|YP_595314.1| carbamoylphosphate synthase large subunit (split gene in MJ)
           [Lawsonia intracellularis PHE/MN1-00]
 gi|94731630|emb|CAJ54993.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Lawsonia intracellularis PHE/MN1-00]
          Length = 1076

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  +         D               +V  ++   +P     
Sbjct: 29  SGTQGIKALKEEGYNVVLVNSNPATIMTDPTLANHTYIEPLELETVTAIIRKERPCALLP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +             E+    + ++  A S +K R         VP    
Sbjct: 89  TLGGQTALNIALNLAKSGILHECGTELIGASADVIEKAESREKFRQSMENIGLKVPSSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  +    + + L  +Q  + +  ++++IEQ
Sbjct: 149 AKTIEEVHQIALNIPFPVIVRPAFTLGGTGGGIAYNMEDLELIAIQGLTASPTNEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +         ++  K     
Sbjct: 209 SVIGWKEFEMEVVRDAADNCIIICSIENLDPMGIHTGDSITVAPAQTLSDIEYQKMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVKTGGSNIQFGVNPKNGELVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/262 (11%), Positives = 79/262 (30%), Gaps = 10/262 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++A  +PD       G    +  +  +   + I  T    + 
Sbjct: 616 DRLYFEPLTF---EDVMNIIAQEQPDGVVVQFGGQTPLNLALPLVRAGVPILGTSPEAID 672

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A +  + ++         P   +             I  P V++P        + +I +
Sbjct: 673 RAENRSRFQALLQKLKLQQPANGTATSINEAASIAKTIGYPIVVRPSYVLGGRAMQIIYE 732

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +           + D+ ++        +   V   +      IA            +
Sbjct: 733 EKELIHYFSLYGKDCNLDRPILIDQFLEYAIEVDVDALSDGTNVYIAGVMEHIEE-AGIH 791

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +  ++ ++++       + +   G+    F        ++ LE+N + 
Sbjct: 792 SGDSSCVIPPHSLSQELIEDIKSQTTALAKELQVIGLMNIQFAI--KDNVIYILEVNPRA 849

Query: 267 GMTPVSIFPEMAAYAGYSFREL 288
             T     P ++   G     L
Sbjct: 850 SRTT----PFVSKATGVPLPYL 867


>gi|302561741|ref|ZP_07314083.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           griseoflavus Tu4000]
 gi|302479359|gb|EFL42452.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           griseoflavus Tu4000]
          Length = 1102

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 84/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VL------------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L            HGN   +     ++                  + +   K++     
Sbjct: 89  TLGGQTALNTAISLHGNGVLEKYGVELIGANVEAIHKGEDRDLFKEVVEEVRKKIGHGES 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   ++      + L   P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSHICHSMDDVLRGVEALGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|315637389|ref|ZP_07892602.1| carbamoyl-phosphate synthase, large subunit [Arcobacter butzleri
           JV22]
 gi|315478281|gb|EFU69001.1| carbamoyl-phosphate synthase, large subunit [Arcobacter butzleri
           JV22]
          Length = 1081

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/300 (10%), Positives = 78/300 (26%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G++V  I+ +                       V  ++     D    
Sbjct: 29  SGTQATKTLKELGYRVVLINSNPATIMTDPEFADKTYIEPITEEVVAKIIEKENIDAILP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G            + +LE ++    H   +                   +P   +  
Sbjct: 89  TMGGQTALNVATSMYEKGMLEGIKFLGAHPDSIKKGEDRHLFNEAMKKIGMDLPKSANAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +     I  P + +     +  G  V    +   +        +  +++ I + +
Sbjct: 149 TLEEAIKVAKEIGFPVISRASFTLAGGGSGVAYNMEEFKVLAAAGIEASPINEIEIMESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQDMRNASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFSICPKTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 89/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID    V  V+    PD    ++H        +   L         +      L+ D
Sbjct: 611 FEPIDF-EHVRSVVEKENPDGV--IVHFGGQTPLKLANALTKAGAKIIGTTAEVIDLAED 667

Query: 93  KMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V   G+      + +     ++    I  P +++P       G+ ++     +
Sbjct: 668 RKKFSAFVEKIGLLQPENGTAVEVTEAIEIAEKIGYPVLVRPSFVLGGRGMKIVYSTDEL 727

Query: 151 PLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++ S ++   +LI++++D  IEL    + D         +   +           
Sbjct: 728 KQYMDEAVSVSNDAPVLIDKFLDRAIELDVDCISDGKEVYIGGIMQHIEEAGIHSG---D 784

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           ++  + P  I  D+ KE++         +G  G+  + +       +++ +E+N +   T
Sbjct: 785 SACSLPPVSISDDLIKELETKTKEMALGLGVVGLMNTQYAI--HKGQIYLIEVNPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 843 ----VPFVSKATGMPLAKVATR 860


>gi|228902391|ref|ZP_04066546.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           IBL 4222]
 gi|228857248|gb|EEN01753.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           IBL 4222]
          Length = 1018

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLGEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|228909713|ref|ZP_04073536.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           IBL 200]
 gi|228850002|gb|EEM94833.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           IBL 200]
          Length = 1018

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|228966839|ref|ZP_04127883.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar sotto str. T04001]
 gi|228792938|gb|EEM40496.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar sotto str. T04001]
          Length = 1018

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 526 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 585

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 586 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 645

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 646 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 705

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 706 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 762

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 763 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 806



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMD 92
             V  ++   +PD     L G  G + +   + +   +      IL + L         D
Sbjct: 18  EFVSRIIRKERPDAILPTLGGQTGLN-MAVELAKSGILEECGVEILGTKLSAIEQAEDRD 76

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             R+     +  +P    I       +    I  P +++P       G  +   ++ +  
Sbjct: 77  LFRTLMQELNEPIPSSTIIHTLEEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEELIE 136

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q L+E+ + G +     +   S D   +     +     +        
Sbjct: 137 IVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDSIVV 196

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++  S
Sbjct: 197 APSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVSRSS 253

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   GY   +L   +
Sbjct: 254 --ALASKATGYPIAKLAAKI 271


>gi|75763136|ref|ZP_00742909.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
 gi|74489373|gb|EAO52816.1| Carbamoyl-phosphate synthase large chain [Bacillus thuringiensis
           serovar israelensis ATCC 35646]
          Length = 975

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/290 (11%), Positives = 93/290 (32%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++AG++   ++ +                       V  ++   KP+       G   
Sbjct: 483 AIKEAGYEAIIVNNNPETVSTDFSISDKLYFEPLTIEDVMHIIDLEKPEGVIVQFGGQTA 542

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A   DK  +         PV  +       +     
Sbjct: 543 INLAAKLEEHGVKILGTSLEDLDRAEDRDKFEAALTQLGIPQPVGKTATTVEQAVAIAEE 602

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ + + +   +  +   +    +LI++Y+ G E+    + 
Sbjct: 603 IGYPVLVRPSYVLGGRAMEIVYRQEELLHYMKNAVKVHAEHPVLIDRYMVGKEIEVDAIS 662

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +   + +++        + +   G+
Sbjct: 663 DGENVFIPGIMEHIERAG---VHSGDSIGVYPPQSLSEKLKEQIIEHTIALGKGLNIVGL 719

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     +   ++
Sbjct: 720 LNIQFVV--FKDQVYVIEVNPRASRT----VPFLSKITGVPMANVATKVI 763



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/203 (13%), Positives = 65/203 (32%), Gaps = 5/203 (2%)

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             D  R+     +  +P    I       +    I  P +++P       G  +   ++ 
Sbjct: 31  DRDLFRTLMQELNEPIPSSTIIHTLGEAHEFVKEIGYPVIVRPAFTMGGTGGGICSNEEE 90

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   +      +   Q L+E+ + G +     +   S D   +     +     +     
Sbjct: 91  LIEIVSGGLKHSPVTQCLLEKSIAGCKEIEYEVMRDSNDNAIVVCNMENIDPVGVHTGDS 150

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                       + Y+ ++  +    +A+G  G        DP S + + +E+N  P ++
Sbjct: 151 IVVAPSQTLSDRE-YQMLRNTSLRIIRALGIEGGCNVQLALDPHSFQYYVIEVN--PRVS 207

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
             S     +   GY   +L   +
Sbjct: 208 RSS--ALASKATGYPIAKLAAKI 228


>gi|121999139|ref|YP_001003926.1| urea amidolyase-like protein [Halorhodospira halophila SL1]
 gi|121590544|gb|ABM63124.1| urea amidolyase related protein [Halorhodospira halophila SL1]
          Length = 1200

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 24/186 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ +     ++            +++++    L +    G 
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMQLCHDAAALREAYDSVRRLSANNFSNDGLFLEKYVEHGR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD    V  +            + +           +  D  + +   A    
Sbjct: 207 HIEVQLFGDGCGTVIALGERDCSLQ----RRNQKVVEETPAPGLDADTRQALLDAAERLG 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           + +  R     +++ D  +   ++LE+N +     G+T         A  G    +L+ W
Sbjct: 263 RQVAYRSAGTVEYILDADTGAFYFLEMNTRLQVEHGVTE--------AVTGI---DLVGW 311

Query: 292 MVEDAS 297
           MVE A+
Sbjct: 312 MVEAAA 317


>gi|6634684|emb|CAB64535.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPDLIERLVDLA 34


>gi|15606634|ref|NP_214014.1| biotin carboxylase [Aquifex aeolicus VF5]
 gi|2983860|gb|AAC07413.1| biotin carboxylase [Aquifex aeolicus VF5]
          Length = 477

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 101/315 (32%), Gaps = 53/315 (16%)

Query: 22  CASALEDAGFKVSQID---------VDRSVGLVLAHLKP-----DLAFN----------V 57
              A ++ G K   I          V ++    L    P     D               
Sbjct: 17  IIRACKELGIKTVAIYSEADVRSLHVKKADEAYLITGDPIRAYLDYVRIVDLAKQVGADA 76

Query: 58  LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H   G   E+           I +         +  DK+++K+V+   G+P  P     
Sbjct: 77  IHPGYGFLAENADFARYCRRRGITFIGPTPEQIEMFGDKVKAKKVMKEVGLPTIPGTEEP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQ 165
           +        +   I  P ++K   GG   G+ VI+ ++ +  +   +       +  GD 
Sbjct: 137 VRTLEDAKHAVKEIGFPVMLKAAYGGGGRGMRVIRNEEELEKNFESAFREAETFFGKGDL 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +   +   +   ++GD   ++  +            K   +  +  LP     D+  
Sbjct: 197 FIEKYVENPKHIEVQILGDKYGNIIHLGERDCSIQRRHQKLIEIAPSPKLPQ----DLRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA---G 282
           ++   A  A   +G       +FL D  + + +++E+N +              +     
Sbjct: 253 KILGNAVRAMTRVGYENAGTLEFLVDLKTGEYYFIEMNTR----------LQVEHTITEA 302

Query: 283 YSFRELLLWMVEDAS 297
            +  +++  M+  A+
Sbjct: 303 ITGVDIVEAMIRIAA 317


>gi|307721321|ref|YP_003892461.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfurimonas autotrophica DSM 16294]
 gi|306979414|gb|ADN09449.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfurimonas autotrophica DSM 16294]
          Length = 475

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 49/308 (15%), Positives = 97/308 (31%), Gaps = 46/308 (14%)

Query: 21  ACASALEDAGFKVSQIDVD--------------RSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           A  S ++  G  V + D                +++  +    + D      +G   E  
Sbjct: 32  AIFSEVDKDGVWVQKADNSFAISGDPVEAYLDYKNLINIAMRTRCDAIHPG-YGFLSESA 90

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQH 122
                 E  +I +        AL  DKM SK  V   GVPV       ++  +       
Sbjct: 91  EFAKACEENDIIFIGPKAEHIALFGDKMASKTAVKKVGVPVLEGTVEPVMDAKEGEQIAS 150

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIEL 177
            I  P +IK   GG   G+ ++   +                +  G+  + +   +   +
Sbjct: 151 EIGFPVIIKAAFGGGGRGMRIVHNAKEFQELFESATNEAIKYFGKGEVFIEKFVQNPRHI 210

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++ D   +V  +            +            ++     K++ + A  A Q 
Sbjct: 211 EVQIVADKYGNVVHLGERDCSIQ----RRHQKVIEIAPSPRLSDATRKKLCQTAVNAVQE 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IG   +   +FL D      +++E+N       P +T +            S  +++  M
Sbjct: 267 IGYENVGTVEFLVDDNDD-FYFIEMNTRVQVEHP-VTEI-----------ISGVDIIQRM 313

Query: 293 VEDASCLR 300
           +E A   +
Sbjct: 314 IEIAGGDK 321


>gi|170288181|ref|YP_001738419.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2]
 gi|226700943|sp|B1L8T8|CARB_THESQ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|170175684|gb|ACB08736.1| carbamoyl-phosphate synthase, large subunit [Thermotoga sp. RQ2]
          Length = 1099

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 103/299 (34%), Gaps = 33/299 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+ AG++V  +         D + S            +  ++   +PD    
Sbjct: 29  SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V    + IL+   +    + + +   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELAERGILDKYGVQLIGAKLDSIKKAEDRELFKETMEKAGLEVLRSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++      P +I+P       G  +   ++ +   + +    +    +LIE+
Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         +     +     +      +         ++ Y+ ++  
Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A     AIG   G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 268 AHKVIDAIGIETGGSNIQFAVDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322



 Score = 42.6 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 93/290 (32%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++   +         D D              V  ++ + KP        G   
Sbjct: 575 AFQEEGYETIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLEIVRNEKPKGVVVAFGGQTP 634

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  + E + I  T    +  A   +K            P   +       +     
Sbjct: 635 LKIAKYLVEERVNIIGTSFESIEIAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAEN 694

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   Q + + + +++  + G  +LI+++++       +  
Sbjct: 695 LGYPVLVRPSYVLGGRAMAIVDTPQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDV 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D   D   + +        E    S +S  VLP     + + +E++   +   +A+   G
Sbjct: 752 DVVSDGKYVWIAGLMEQIEEAGVHSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVG 811

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           ++           +++ +E N +   T     P ++   G     +   +
Sbjct: 812 VANIQLAV--KDEEIYIIEANPRASRT----VPFVSKAIGIPVARIAAKI 855


>gi|218283802|ref|ZP_03489725.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989]
 gi|218215608|gb|EEC89146.1| hypothetical protein EUBIFOR_02319 [Eubacterium biforme DSM 3989]
          Length = 1069

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 95/297 (31%), Gaps = 36/297 (12%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C   L + G++   I+                         V  V+   KP        G
Sbjct: 577 CVQTLREEGYEAIVINNNPETVSTDFSISDKLYFEPLTTEDVMHVIDLEKPLGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  +   L    +    + + +  L+ D+   + ++    +P            ++
Sbjct: 637 Q--TAINLADSLVEHGVKILGTSLHSIDLAEDRHEFEAMLHKLNIPQPQGETAVTVEESL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177
              + I  P +++P        + ++  D  + + +       +H   +L+++Y+ G EL
Sbjct: 695 VIANKIGYPVLVRPSYVLGGRAMEIVHNDDELRVYMATAVKEISHDAPILVDKYIVGKEL 754

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               + D          P    +       S +S  V P +I  + + + +        +
Sbjct: 755 EIDAIADGKNVYI----PGVMEHIERAGIHSGDSISVYPTQIINEKVKETIIDYGTRIGK 810

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                G+    F+ D  +  V+ LE+N +   T     P ++   G +  ++    V
Sbjct: 811 GFEFVGLYNIQFIVDKENN-VYVLEVNPRSSRT----VPFLSKITGVAMSQIATKCV 862



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  I+ +                          V+   +PD     
Sbjct: 30  GSQACQSLREEGYEVILINSNPATIMTDTAIADRVYIEPLTVDFAKRVIYKERPDAILGS 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + + A   + D+   RS     +  VP    +
Sbjct: 90  LGGQTGLNLVVELHEDGILDEFGVEILGTDLHAINRAEDRELFRSLMQEINEPVPESMIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++       P V++P       G      +  +          +   Q LIEQ 
Sbjct: 150 HTVEEAVEFAKREGYPLVVRPAYTLGGTGGGFADDEAELREICDSGLKASPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  ++       +     + ++  +
Sbjct: 210 IAG-YKEIEYEVMRDAKDNAIVVCNMENIDPVGVHTGDSTVVAPVQTLTDRENQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        +P S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKICGGCNVQLALNPDSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKISAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325


>gi|307103805|gb|EFN52062.1| hypothetical protein CHLNCDRAFT_49120 [Chlorella variabilis]
          Length = 1040

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 32/276 (11%), Positives = 77/276 (27%), Gaps = 28/276 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     V  +L   +PD    
Sbjct: 19  SGTQACKALKAEGYEVVLLNSNPATIMTDPGTADRTYVGPMTPELVEQILEKERPDAILP 78

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G       +      ILE   +    + + +   + D+      +    + +  S +
Sbjct: 79  TMGGQTALNLAKALSESGILEKYNVELIGAKLASINKAEDRELFANAMDKLNLKMAQSCI 138

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + +   P +I+P       G  +               + +   Q+ IE
Sbjct: 139 ATTMEECMKAAEEIGRLPLIIRPAFTLGGTGGGIAYNMDEFAEICKAGLNASMTSQVQIE 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +   +      +  +    
Sbjct: 199 QSLLGWKEFELEVMRDLADNVVIICSIENVDPMGVHTGDSITVAPVQTLTDKEYQRLRDA 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +  +     G S      +P    +  +E+N +
Sbjct: 259 SVDIIREMGVECGGSNVQMAINPADGAMVIIEMNPR 294



 Score = 44.5 bits (103), Expect = 0.020,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 59/174 (33%), Gaps = 10/174 (5%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
              + +  P +++P        + ++  DQ I   +  +   +    +L+++Y+D     
Sbjct: 669 QIANSLGYPVMVRPSYVLGGRAMEIVYSDQDIHRYINTAVEVDPDRPVLVDKYLD-RADE 727

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V   A  D   +             +S  ++  + P  I  +    ++       +A+
Sbjct: 728 LDVDALADKDGNVVICGIMQHIEQAGVHSGDSACSIPPQTISPECLAVIRDWTPKLAKAL 787

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
              G+    +        V+ +E N +   T     P +A   G+    +  LL
Sbjct: 788 KVVGLINIQYAV--QDNTVYIIEANPRASRT----VPFVAKAIGHPLAAYASLL 835


>gi|323359988|ref|YP_004226384.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum
           StLB037]
 gi|323276359|dbj|BAJ76504.1| carbamoylphosphate synthase large subunit [Microbacterium testaceum
           StLB037]
          Length = 1095

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D D              +  ++A  KPD    
Sbjct: 29  SGTQACRVLREEGVRVILVNSNPATIMTDPDFADATYIEPITPEVIESIIAKEKPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       + ILE  ++    +   A     D+   K++V   G  V  S++
Sbjct: 89  TLGGQTALNAAIQLHKRGILEKYDVELIGADFDAINRGEDRQIFKELVIEAGADVAASVI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P V++P      LG      ++ +          +  +++L+E+
Sbjct: 149 CHSMDELLAGAEKLGYPLVVRPSFTMGGLGSGFAYDEEDLRRIGGAGLHDSPTNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D T +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIRAVGVDTGGCNIQFAVDPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|302412655|ref|XP_003004160.1| urea amidolyase [Verticillium albo-atrum VaMs.102]
 gi|261356736|gb|EEY19164.1| urea amidolyase [Verticillium albo-atrum VaMs.102]
          Length = 1794

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 95/289 (32%), Gaps = 26/289 (8%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
               L   G  VS+  +D    L+LA      A    +G   E+    + +E   + +  
Sbjct: 697 IIKTLRKLG--VSETYLDGQQILILAKESGAEAIIPGYGFLAENADFASQVEAAGLVWIG 754

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGS 137
                      K  +++V  S GVPV P       ++D        I  P ++K   GG 
Sbjct: 755 PTPDQMRKLGLKHLAREVAISAGVPVVPGSKSLLESVDQALAEAERIKYPVMLKSTAGGG 814

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
            +G+      +S+             +      +V+        +    L   E  V  +
Sbjct: 815 GIGLSRCDDAKSLTEAYHSVQRLAEANFGDAGMFVEHFIENARHIEVQMLGDGEGNVTTA 874

Query: 198 DFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 L+  +       P   +P  +   ++  A     A+  R +   ++++D  + +
Sbjct: 875 GERDCSLQRRNQKVVEESPAVFVPPAVRDRMREAAKRLAAAVKYRNVGTIEYIYDVDTEE 934

Query: 257 VFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCL 299
            ++LE+N +              +       G    +L+  MV+ AS  
Sbjct: 935 FYFLEVNTR----------LQVEHPVTESVTGL---DLVEAMVKIASGN 970


>gi|229581956|ref|YP_002840355.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           Y.N.15.51]
 gi|259585689|sp|C3NH23|CARB_SULIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|228012672|gb|ACP48433.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           Y.N.15.51]
          Length = 1051

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVSVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    +V         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|300869330|ref|ZP_07113921.1| Urea carboxylase [Oscillatoria sp. PCC 6506]
 gi|300332707|emb|CBN59119.1| Urea carboxylase [Oscillatoria sp. PCC 6506]
          Length = 1207

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 67/181 (37%), Gaps = 16/181 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ V   ++ +     +    +  +      +++    T   + 
Sbjct: 150 IGYPVMLKSTAGGGGIGLQVCLSEEDLAEAFEKVQRLSQSNFKQSGVFLEKYIQTARHIE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
                  +  V         ++  +       PA    D + +++   A    +A+  + 
Sbjct: 210 VQIFGDGKGNVIALGERDCSVQRRNQKVIEETPAPGIRDQLREQLYAAAVKMGKAVNYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
               +F++D  +++ ++LE+N +     G+T              +  +L+ WM++ AS 
Sbjct: 270 AGTVEFVYDVDTKQFYFLEVNTRLQVEHGVTET-----------VNRIDLVEWMIKLASG 318

Query: 299 L 299
            
Sbjct: 319 D 319


>gi|162319798|ref|YP_451768.2| carbamoyl phosphate synthase large subunit [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 1080

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 29  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 89  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 149 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +       ++  + T      +   +Y+ ++  
Sbjct: 209 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMG-VHTGDSITVAPAQTLTDKVYQRLRDA 267

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    + IG   G S   F   P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 268 SIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 588 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 648 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 708 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 767 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 826

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 873


>gi|84368336|dbj|BAE69494.1| carbamoyl-phosphate synthase large chain [Xanthomonas oryzae pv.
           oryzae MAFF 311018]
          Length = 1090

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 101/303 (33%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G++V  +         D +            ++V  +++  KPD    
Sbjct: 39  SGAQACKALRDEGYRVVLVNSNPATIMTDPNMADAVYIEPINWQTVEKIISKEKPDALLP 98

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G    A+ M + R    V+   + +       
Sbjct: 99  TMGGQTALNCALDLADHGVLEKYNVELIGAKREAIRMAEDRELFRVAMGEIGLDCPKAAV 158

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             T++    I      P +I+P       G  +    + +   + +    +   ++L+E+
Sbjct: 159 AHTLEEALEIQTRVGYPTIIRPSFTLGGSGGGIAYNREELIEIVGRGLELSPTTEVLVEE 218

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +       ++  + T      +   +Y+ ++  
Sbjct: 219 SVLGWKEFEMEVVRDTADNCIIVCAIENLDPMG-VHTGDSITVAPAQTLTDKVYQRLRDA 277

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    + IG   G S   F   P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 278 SIAVLRKIGVDTGGSNVQFGISPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKVA 333

Query: 290 LWM 292
             +
Sbjct: 334 AKL 336



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 87/291 (29%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 598 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P           +     
Sbjct: 658 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDTLGLKQPPNRIARNAEEALVLARE 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 718 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 776

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +      E++R   +  + +   G+
Sbjct: 777 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPQTQAELRRQVVMLAEGLNVVGL 836

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 837 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGMPLAKIAAR 883


>gi|260555533|ref|ZP_05827754.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
 gi|260412075|gb|EEX05372.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
          Length = 1201

 Score = 59.9 bits (143), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 78/254 (30%), Gaps = 22/254 (8%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             +L   L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIAFIGPTSSQMLDFGLKHTARELAIKSNVPLLPGSSL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LADEAEALTEAARIGYPVMLKSTAGGGGIGMRLVWNETELKDAYQTVSYLAQVNFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           Y++        +        +  V         ++  +       PA    +  ++  Q+
Sbjct: 197 YLEKFVQHARHIEVQIFGDGKGQVLALGERDCSVQRRNQKVIEETPAPHLNEQQRDYLQK 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR 286
           +A    Q++  R     +F+ D  +++ ++LE+N             +    G +   F 
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTETQEFYFLEVNT-----------RLQVEHGVTEQVFS 305

Query: 287 -ELLLWMVEDASCL 299
            +L+ WMV  AS  
Sbjct: 306 VDLVEWMVTLASGD 319


>gi|313114931|ref|ZP_07800428.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310622753|gb|EFQ06211.1| carbamoyl-phosphate synthase, large subunit [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 1083

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +   +         D D              V  +L   KPD    
Sbjct: 29  SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++      L+   I            + D+   +         +     
Sbjct: 89  NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     I  P +++P       G  + +    +          +   Q+L+E+
Sbjct: 149 VETLQDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLRLSPIHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                 + Y+ ++  
Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A      +G  G     F   P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSYDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 76/250 (30%), Gaps = 10/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            SV  ++A  KPD       G              L I  T +  +  A   ++      
Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158
                     ++      + +   I  P +++P        +IV      +   + + + 
Sbjct: 686 RCRIPRAPGRTVFNLDEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +    +L+++Y+ G E     + D    +    + + +       +S  +        
Sbjct: 746 HVDMDHPVLLDKYILGTECEVDAICDGENFLIPGIMEQVERTG---VHSGDSICVYPAQH 802

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +        + +   G+    +     + KV+ +E+N +   T     P ++
Sbjct: 803 LTQAEIDTMVDYTGRFARELHVNGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856

Query: 279 AYAGYSFREL 288
              G    +L
Sbjct: 857 KVTGVPMVDL 866


>gi|147678144|ref|YP_001212359.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146274241|dbj|BAF59990.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 809

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  I+ +                       V  V+   +PD     
Sbjct: 30  GTQACRSLREEGLEVVLINSNPATIMTDSNMADRVYIEPLTPEFVTRVIRAERPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPSI 111
           L G  G +  +Q     +LE   +    + + A   + D+   K+++      +P     
Sbjct: 90  LGGQVGLNLALQLAESGVLEEHGVQLLGTPLEAIKRAEDREMFKEMMQAIKEPIPESTIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G  +      +   + +    +   Q+L+E+ 
Sbjct: 150 STLEEAEIFAERIGLPLIIRPAYTLGGTGGGIAYTMDDLRATVTRGLKHSIIGQVLLERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +     +                 + Y  ++  +
Sbjct: 210 VVGWKEIEYEVMRDGADNCITVCNMENIDPMGIHTGDSIVVAPSQTLSDRE-YHMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNIQFALDPGSFQYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 23/193 (11%), Positives = 58/193 (30%), Gaps = 21/193 (10%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   I+                     V  +V  ++   KPD       G   
Sbjct: 584 ALREEGYEAIIINNNPETVSTDFDTADRLYFEPLVAENVLNIIDREKPDGVIVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   ++     +      P   +             
Sbjct: 644 INLAKPLARAGVNILGTSVEDIDRAEDRERFDKLLIELGIPKPPGRTAFSVEEAYAIASE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   +  +   +    +L+++Y+ G EL    + 
Sbjct: 704 IGFPVLVRPSYVLGGRAMEIVYNNKELFDYMSSAVKVSPEYPVLVDKYIYGKELEVDAIS 763

Query: 184 DASLDVTEIAVPK 196
           D +  +    +  
Sbjct: 764 DGADILIPGIMEH 776


>gi|15897554|ref|NP_342159.1| carbamoyl phosphate synthase large subunit [Sulfolobus solfataricus
           P2]
 gi|284174875|ref|ZP_06388844.1| carbamoyl phosphate synthase large subunit [Sulfolobus solfataricus
           98/2]
 gi|2500032|sp|Q59969|CARB_SULSO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|1304392|gb|AAA99059.1| carbamoylphosphate synthetase, large subunit [Sulfolobus
           solfataricus P2]
 gi|6015831|emb|CAB57658.1| carbamoylphosphate synthetase, large subunit [Sulfolobus
           solfataricus P2]
 gi|13813809|gb|AAK40949.1| Carbamoyl-phosphate synthase large subunit (carB) [Sulfolobus
           solfataricus P2]
 gi|261602317|gb|ACX91920.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus
           solfataricus 98/2]
          Length = 1051

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYNVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++L+E+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLLEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    AV         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|281411775|ref|YP_003345854.1| carbamoyl-phosphate synthase, large subunit [Thermotoga
           naphthophila RKU-10]
 gi|281372878|gb|ADA66440.1| carbamoyl-phosphate synthase, large subunit [Thermotoga
           naphthophila RKU-10]
          Length = 1099

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+ AG++V  +         D + S            +  ++   +PD    
Sbjct: 29  SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V    + IL+   +    + + +   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++      P +I+P       G  +   ++ +   + +    +    +LIE+
Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         +     +     +      +         ++ Y+ ++  
Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+    AIG   G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322



 Score = 42.9 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++ + KP        G          + E + I  T    + 
Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEEKVNIIGTSFESIE 657

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +K            P   +       +     +  P +++P        + ++  
Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q + + + +++  + G  +LI+++++       +  D   D   + +        E   
Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP     + + +E++   +   +A+   G++           +++ +E N +
Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANIQLAV--KDEEIYIIEANPR 832

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++   G     +   +
Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855


>gi|148269507|ref|YP_001243967.1| carbamoyl-phosphate synthase, large subunit [Thermotoga petrophila
           RKU-1]
 gi|167006453|sp|A5IJL8|CARB_THEP1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147735051|gb|ABQ46391.1| carbamoyl-phosphate synthase large subunit [Thermotoga petrophila
           RKU-1]
          Length = 1099

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+ AG++V  +         D + S            +  ++   +PD    
Sbjct: 29  SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V    + IL+   +    + + +   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++      P +I+P       G  +   ++ +   + +    +    +LIE+
Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         +     +     +      +         ++ Y+ ++  
Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+    AIG   G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322



 Score = 42.9 bits (99), Expect = 0.053,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++ + KP        G          + E + I  T    + 
Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEEKVNIIGTSFESIE 657

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +K            P   +       +     +  P +++P        + ++  
Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q + + + +++  + G  +LI+++++       +  D   D   + +        E   
Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP     + + +E++   +   +A+   G++           +++ +E N +
Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKIVGVANIQLAV--KDEEIYIIEANPR 832

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++   G     +   +
Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855


>gi|15643323|ref|NP_228367.1| carbamoyl-phosphate synthase, large subunit [Thermotoga maritima
           MSB8]
 gi|22095541|sp|Q9WZ27|CARB_THEMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|4981072|gb|AAD35642.1|AE001730_10 carbamoyl-phosphate synthase, large subunit [Thermotoga maritima
           MSB8]
          Length = 1099

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+ AG++V  +         D + S            +  ++   +PD    
Sbjct: 29  SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V    + IL+   +    + + +   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELAERGILDKYGVQLIGAKLESIKKAEDRELFKETMEKAGLEVLRSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++      P +I+P       G  +   ++ +   + +    +    +LIE+
Sbjct: 149 VNNLADALETAREFGYPVIIRPSFTLGGTGGGIAFNEEELRDIVTKGLIESPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         +     +     +      +         ++ Y+ ++  
Sbjct: 209 SVLGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPAQTLTDVE-YQRMRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+    AIG   G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 268 AYKVIDAIGIETGGSNIQFALDPETGRMVVIEMN--PRVSRSS--ALASKATGYPIAKV 322



 Score = 42.2 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 33/267 (12%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++ + KP        G          + E + I  T    + 
Sbjct: 601 DRLYFEPLTV---EDVLEIVRNEKPKGVVVAFGGQTPLKIAKYLVEERVNIIGTSFESIE 657

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +K            P   +       +     +  P +++P        + ++  
Sbjct: 658 IAEDREKFAKLLKQIGLKCPPFGTASSVEEALRVAENLGYPVLVRPSYVLGGRAMAIVDT 717

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            Q + + + +++  + G  +LI+++++       +  D   D   + +        E   
Sbjct: 718 PQELEMYVKEAAVVSPGYPVLIDKFLED---AIELDVDVVSDGKYVWIAGLMEQIEEAGV 774

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  VLP     + + +E++   +   +A+   G++           +++ +E N +
Sbjct: 775 HSGDSACVLPPVSLSEKLVEEIEETVYKLVKALKVVGVANIQLAV--KDEEIYIIEANPR 832

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++   G     +   +
Sbjct: 833 ASRT----VPFVSKAIGIPVARIAAKI 855


>gi|317502339|ref|ZP_07960508.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089946|ref|ZP_08338837.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316896295|gb|EFV18397.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330403084|gb|EGG82647.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 1075

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++   +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPEIADVTYIEPLNVDRIEQIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K  +   G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKHTMDQLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIAEKLGYPVVLRPAYTMGGAGGGLVYNVDELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   +           +       ++  +        I  ++ + +Q  
Sbjct: 209 SILGWEELELEVVRDAEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQQRLQEK 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++   G     +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 268 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 42.9 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R         +P     +     ++    
Sbjct: 641 LNLAADLERNGVKILGTAPSVIDLAEDRDLFREMMDKLEIPMPESGMAVTVDDALEIAEK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI++++           
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKNISEENVKTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         L + +V      R
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 869


>gi|153815196|ref|ZP_01967864.1| hypothetical protein RUMTOR_01428 [Ruminococcus torques ATCC 27756]
 gi|145847455|gb|EDK24373.1| hypothetical protein RUMTOR_01428 [Ruminococcus torques ATCC 27756]
          Length = 1086

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++   +PD    
Sbjct: 40  SGTQACKALRNLGYEIVLVNSNPATIMTDPEIADVTYIEPLNVDRIEQIIKKERPDALLP 99

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K  +   G+ +  S  
Sbjct: 100 NLGGQSGLNLCSELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKHTMDQLGIEMARSEV 159

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++     +     +    +   Q+L+E+
Sbjct: 160 AYSVDEALAIAEKLGYPVVLRPAYTMGGAGGGLVYNVDELKTVCARGLQASLVGQVLVEE 219

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   +           +       ++  +        I  ++ + +Q  
Sbjct: 220 SILGWEELELEVVRDAEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQQRLQEK 278

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++   G     +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 279 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 333

Query: 291 WMV 293
            M+
Sbjct: 334 AML 336



 Score = 42.9 bits (99), Expect = 0.063,   Method: Composition-based stats.
 Identities = 45/298 (15%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  GF+   +         D D              V  +    KP        G   
Sbjct: 592 ALKKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R         +P     +     ++    
Sbjct: 652 LNLAADLERNGVKILGTAPSVIDLAEDRDLFREMMDKLEIPMPESGMAVTVDDALEIAEK 711

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI++++           
Sbjct: 712 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMKAAVGVTPDRPILIDRFL---GHATECEA 768

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 769 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKNISEENVKTIKEYTRKIAEEMHVKG 828

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         L + +V      R
Sbjct: 829 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIRMVPLAIDIVTSELTGR 880


>gi|37521338|ref|NP_924715.1| carbamoyl phosphate synthase large subunit [Gloeobacter violaceus
           PCC 7421]
 gi|35212335|dbj|BAC89710.1| carbamoyl phosphate synthetase large chain [Gloeobacter violaceus
           PCC 7421]
          Length = 1083

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYEIVLVNSNPATIMTDPATADRTYIEPVTAEFVERIIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     +L+   +    + + A   + D+   KQ +   G+ V  S  
Sbjct: 89  TMGGQTALNVTVELAESGVLDRYGVELIGAKLPAIKKAEDRELFKQAMEKIGLAVPRSGF 148

Query: 113 VNR---FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      + ++ + S P +++P       G  +    +     +      +   Q+L+E
Sbjct: 149 AHTLEEARVVAEEIGSFPLILRPSFTLGGTGGGIAYNREEFERMIRVGLDASPTSQVLVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +   G +     +     D   I     +F    +      +          +  +    
Sbjct: 209 ESALGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQRLRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F   P + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 AIKVIREIGVETGGSNIQFAVHPENGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 83/290 (28%), Gaps = 28/290 (9%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + GF+   +         D D S  L    L  +   N++             G   
Sbjct: 586 ALSEDGFETIMVNSNPETVSTDYDTSDRLYFEPLTREDVLNIVEAEKPVGVIVQFGGQTP 645

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      + I  T    +  A   ++            P           +     
Sbjct: 646 LNLAVPLEKAGVPIWGTSPDSIDIAEDRERFEQLCQQLGIRQPANGMARSTADAVAVAGR 705

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  D+ +   +  +        +LI+++++   +   V  
Sbjct: 706 IGYPVVVRPSYVLGGRAMEIVYTDEGLGRYMAHAVQVEPDRPILIDKFLE-DAVEVDVDA 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  ++  +    +   +   ++       +A+   G+
Sbjct: 765 ICDRTGQVVIGGIMEHIEQAGIHSGDSACVLPTRTLDESVLAVIRDWTVKLARALKVVGL 824

Query: 244 SRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +         +V+ LE N +   T     P +A   G    ++   
Sbjct: 825 MNIQYAVKAHREGAEVYVLEANPRASRT----VPFVAKATGVPLAKIAAR 870


>gi|308173088|ref|YP_003919793.1| arginine-specific carbamoyl-phosphate synthetase large subunit
           [Bacillus amyloliquefaciens DSM 7]
 gi|307605952|emb|CBI42323.1| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens DSM 7]
 gi|328554070|gb|AEB24562.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911149|gb|AEB62745.1| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus amyloliquefaciens LL3]
          Length = 1031

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 99/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   KPD    
Sbjct: 29  SGTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTPESIEAIIEKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110
            L G    +  V+      L+   +    + +       D+ + +         VP    
Sbjct: 89  NLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMKELDQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  + K  ++    + Q+   +   Q L+E+
Sbjct: 149 VDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALLASPISQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDKNHTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLAIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 92/294 (31%), Gaps = 33/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G++   I+                         +  V  H   D A     G    
Sbjct: 585 LQKLGYETIMINNNPETVSTDYEIADRLYFEPLTTEHILNVAEHENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L +    D                 +        +    I
Sbjct: 645 NAAEPLEKAGIPLLGTSFETLDALEDRDLFYKLLDDLDLKHAKGETAYTKEEAAEKASRI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I+++ +  I   L   +   +   +LI+QY+ G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVESEAQISELLENEAGMPY--PILIDQYITGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP   +  ++ +E++  A      +  +GI
Sbjct: 763 GHEVFV----PTCTEHIERAGVHSGDSFAILPGPSVTPEMQRELKEAAEKIAVKLAFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D     +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVIDEK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867


>gi|284997965|ref|YP_003419732.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.D.8.5]
 gi|284445860|gb|ADB87362.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.D.8.5]
          Length = 1051

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    +V         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|227830471|ref|YP_002832251.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|229579283|ref|YP_002837681.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           Y.G.57.14]
 gi|259585687|sp|C3MQE3|CARB_SULIL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|259585690|sp|C3NEM0|CARB_SULIY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|227456919|gb|ACP35606.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           L.S.2.15]
 gi|228009997|gb|ACP45759.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           Y.G.57.14]
          Length = 1051

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    +V         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSSVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|34557492|ref|NP_907307.1| urea amidolyase-related protein [Wolinella succinogenes DSM 1740]
 gi|34483209|emb|CAE10207.1| UREA AMIDOLYASE-RELATED PROTEIN [Wolinella succinogenes]
          Length = 1200

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 31/181 (17%), Positives = 62/181 (34%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   +Q +    L     +         +++    T  
Sbjct: 147 AKRIGYPVMLKSTAGGGGIGMQLCSNEQELEESFLTVKRLSENHFANSGVFLEKYVSTAH 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +        +  V         L+  +       PA       +E     A    +++ 
Sbjct: 207 HIEVQVFGDRKGKVTILGDRDCSLQRRNQKVVEETPAPHLSQECRESLYACAKKLMESVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                  +F++DPL +K ++LE+N +     G+T           +G    +L+ WMV  
Sbjct: 267 YLSAGTVEFIYDPLEQKFYFLEVNTRLQVEHGITE--------EVSGV---DLVEWMVHQ 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|313897862|ref|ZP_07831403.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2]
 gi|312957397|gb|EFR39024.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2]
          Length = 1072

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G++V  I+ +                          ++   +PD     
Sbjct: 30  GSQACQSLREEGYEVVLINSNPATIMTDTAIADRVYIEPLTLEFASRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G + +V+     ILE  ++    + + A   + D+   R+     +  VP    +
Sbjct: 90  LGGQTGLNLVVELAESGILEEYDVEILGTDLAAINKAEDRELFRNLMYEINEPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G      ++ + +        +   Q LIE+ 
Sbjct: 150 HTVEEAIAFANSIGYPVVVRPAYTLGGTGGGFADTEEELRIIADNGLKLSPVHQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    ++ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDNNDNAIVVCNMENIDPVGIHTGDSMVVAPVQTLSDREHQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 89/294 (30%), Gaps = 33/294 (11%)

Query: 26  LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L + G++   I+ +                       V  V+   +P        G    
Sbjct: 581 LRERGYEAIVINNNPETVSTDFSISDKLYFEPLTIEDVMHVVDLEQPLGVIVQFGGQTAI 640

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   + +   ++I  T    +  A       +         P   + +     ++  + I
Sbjct: 641 NLADKLVERGVKILGTSLKDIDRAEDRHAFEAMLHTLDIPQPQGETAVEVEEAVNIANRI 700

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMG 183
             P +++P        + ++  D  + + +       +H   +L+++Y+ G EL    + 
Sbjct: 701 GYPVLVRPSYVLGGRAMEIVHNDDDLRVYMATAVKEISHDAPILVDKYIVGKELEIDAIC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +           + +   P  I   +   +   +    +     G+
Sbjct: 761 DGEHVYIPGIMEHIERAGIHSG---DSISVYPPQTISDKVRDTIVDYSIRIGKGFHFIGL 817

Query: 244 SRSDFLFD-PLSRK---VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ + P   K   V+ LE+N +   T     P ++   G +   +    V
Sbjct: 818 FNIQFIVEAPKDGKEEMVYVLEVNPRSSRT----VPFLSKITGVAMSHIATRCV 867


>gi|229541904|ref|ZP_04430964.1| urea carboxylase [Bacillus coagulans 36D1]
 gi|229326324|gb|EEN91999.1| urea carboxylase [Bacillus coagulans 36D1]
          Length = 1200

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 96/319 (30%), Gaps = 55/319 (17%)

Query: 19  GKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP--------DLAF------ 55
                  L   G +   +          VD++   VL    P        DL        
Sbjct: 14  ATRIERTLSKMGIQSVAVYTKADQDSLHVDQADEAVLIGEGPAAESYLNADLIIKTAIET 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+           I +         +   K  ++ +    GVP+ P 
Sbjct: 74  GAEAIHPGYGFLSENSDFARACRKNGITFIGPEPEQMEVFALKHTARNMARKAGVPLLPG 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              I      ++    I  P ++K   GG  +G+ +   + ++              + +
Sbjct: 134 TDLITTLEDAVEQAAQIGYPVILKSTAGGGGIGMRICDDEAALRKSFKAVRHLASSNFKN 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   + G+   +VT +            K    +    LP      
Sbjct: 194 DGVYLEKYIAKARHVEVQIFGNRFGEVTALGERDCSLQRRNQKVIEESPAPNLPQH---- 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMA 278
           +   +   A      +  R     +FL+DP +   F+LE+N +     G+T         
Sbjct: 250 VRAAMLVSAKKLAATVNYRSAGTVEFLYDPDTLSFFFLEVNTRLQVEHGVTE-------- 301

Query: 279 AYAGYSFRELLLWMVEDAS 297
              G    +L+ WMV++A+
Sbjct: 302 EVLGI---DLVEWMVKEAA 317


>gi|254472985|ref|ZP_05086383.1| pyruvate carboxylase [Pseudovibrio sp. JE062]
 gi|211957706|gb|EEA92908.1| pyruvate carboxylase [Pseudovibrio sp. JE062]
          Length = 1148

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 81/234 (34%), Gaps = 14/234 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V    + D      +G   E            I +            +K+ ++++ 
Sbjct: 67  EIIRVAKEQRVDAIHPG-YGFLSESPEFAEACAENGIIFIGPSPETMRRLGNKVSARELA 125

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVPV P+       M+        I  P ++K   GG   G+ VIK ++++  ++++
Sbjct: 126 IKAGVPVMPATDPLPDDMEEIKRLALEIGYPVMLKASWGGGGRGMRVIKDEETLEREVVE 185

Query: 157 SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +       +   +  L +       +   ++GD   ++  +            +      
Sbjct: 186 AKREARAAFGKDEVYLEKLVERARHVEVQILGDQHGNLVHLFERDCSIQ----RRHQKVV 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +  +  +E+        + +G  G    +FL D  + KV+++E+N +
Sbjct: 242 ERAPAPYLDEEKRRELCEYGLKIGREVGYCGAGTVEFLMDADTGKVYFIEVNPR 295


>gi|78044442|ref|YP_360331.1| carbamoyl-phosphate synthase large subunit [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996557|gb|ABB15456.1| carbamoyl-phosphate synthase, large subunit [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 1064

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       +  V+   KP      
Sbjct: 30  GTQACRALKEEGYEVVLVNSNPATIMTDANIADRVYIEPLTVEFLEKVIIQEKPQGIVAT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +       + IL+   +    + + A   + D+   +   +     VP    +
Sbjct: 90  LGGQAGLNLTVELFERGILQRESVQVLGTPLEAIKKAEDRELFKETMLAIGEPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +I+P       G  +   D+       +    +   Q+L+E+ 
Sbjct: 150 TNVEDGLSFARSIGYPVIIRPAYTLGGSGGGIAHNDEEFKEICQRGLKQSLIQQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 VAGW-KEIEYEVLRDAMDNAIIVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQFALDPKSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 91/278 (32%), Gaps = 33/278 (11%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L + G+K   I         D D              V  ++ H KP+       G    
Sbjct: 578 LREEGYKAVIINNNPETVSTDFDTSDRLYFDPLTFEDVKNIIDHEKPEGVVVQFGGQTAI 637

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         +++  +    + +A    K  +         P    +      + +   I
Sbjct: 638 NLAKPLAQAGIKLFGSSVEAIDTAEDRQKFDAFLNSLGLKRPAGKGVFAISEAVQTAKEI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + ++  ++ +   +  ++  +    +LI++Y++G+E+    + D
Sbjct: 698 GYPVVVRPSYVLGGRAMEIVYNEEELKNYMKWATQISPEHPVLIDRYLEGLEIEVDALAD 757

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  V P      ++  ++          +G +G+
Sbjct: 758 GKEVFI----PGIMEHIERAGVHSGDSIAVYPTLHLDAEMIDKIYEYTCKIALGLGIKGL 813

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
               ++      +++ LE+N       P ++ ++  P 
Sbjct: 814 LNIQYVV--YENELYVLEVNPRASRTIPFLSKITGVPM 849


>gi|23098535|ref|NP_692001.1| arginine specific carbamoyl-phosphate synthase large chain
           [Oceanobacillus iheyensis HTE831]
 gi|22776761|dbj|BAC13036.1| arginine specific carbamoyl-phosphate synthase large chain
           [Oceanobacillus iheyensis HTE831]
          Length = 1075

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 102/308 (33%), Gaps = 42/308 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A   AL+ AG++   I+ +                       V  V+   K D    
Sbjct: 578 SVHAV-QALQKAGYETIMINNNPETVSTDYSVADKLYFEPLALEDVLHVIEKEKVDGV-- 634

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVN 114
           +L         +   LE   IP   +         D+ +  Q ++  G+P      +   
Sbjct: 635 MLQFGGQTAINLANELEKEGIPLLGTKPKEIDQMEDREQFYQFLNQLGIPHIKGEIVHNQ 694

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL--LIEQYV 172
           +  + +   +  P +I+P        + +   ++ +   + +     H      LI+ Y+
Sbjct: 695 KEVISTVKDLGFPVLIRPSYVIGGQSMYICYNEKDLLSYVSKIQEDTHDRCWPLLIDDYL 754

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G+E    V+ D    V    V   +       +S  +     P ++  +  + +  +A 
Sbjct: 755 PGMEYDVDVISDGENIVIPGIVEHIEKAG---VHSGDSIGVFPPRELKSEQQERMIEIAK 811

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AA---YAGY 283
                +   GI    F+    +  ++ LE+N       P ++ V+  P +  A     GY
Sbjct: 812 QIAGKLPIVGIMNIQFVIHHQT--IYVLEVNPRASRTVPVISKVTGVPMIEWAVYSQLGY 869

Query: 284 SFRELLLW 291
              +++  
Sbjct: 870 PLTDIVSK 877



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 94/308 (30%), Gaps = 41/308 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL+D G +V  ++ +                      ++  ++   KPD     
Sbjct: 30  GTQACLALKDEGIEVVLVNNNPATIMTDEQIADNVYLEPLNKETLVKIIEKEKPDGLIGT 89

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +      +K R   +  +  +     +
Sbjct: 90  LGGQTGLNLSIELFEAGILEKYEVELLGTSVDSIQKGEDREKFRELMIEINEPISESKIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G      +      L +    +   Q+L+E+ 
Sbjct: 150 TNVEEGLRFIDQIGFPIILRPAYTLGGEGGGFAHNEAEFEELLNRGLGLSPIHQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IKGW-KEVEYEVMRDANDTCIIVCNMENMDPVGVHTGDSIVVAPSQTLTDHQYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP---EMAA-Y 280
               +A+   G     F  +P S +   +E+N  P ++  S        +P     A   
Sbjct: 269 VKVIRALNVVGGCNIQFALNPDSNEYCIIEVN--PRVSRSSALASKATGYPIASMAAKCA 326

Query: 281 AGYSFREL 288
            G +  EL
Sbjct: 327 IGLNLDEL 334


>gi|300313753|ref|YP_003777845.1| urea amidolyase [Herbaspirillum seropedicae SmR1]
 gi|300076538|gb|ADJ65937.1| urea amidolyase protein [Herbaspirillum seropedicae SmR1]
          Length = 1207

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ V + D  +             +      +++       
Sbjct: 147 ASRVGYPVMLKSTAGGGGIGMRVCRSDAELADAFDSVRRLGQNNFSDAGVFIEKYIERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++  +       PA    D + + +   A    +A+ 
Sbjct: 207 HLEVQVFGDGRGEVIALGVRDCSVQRRNQKVLEETPAPNLPDGMAEALCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D L+ + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSLAGQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|302876837|ref|YP_003845470.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
 gi|307687522|ref|ZP_07629968.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
 gi|302579694|gb|ADL53706.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
          Length = 1076

 Score = 59.5 bits (142), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 42/319 (13%), Positives = 101/319 (31%), Gaps = 41/319 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ +                      +   ++   +P     
Sbjct: 28  SGTQGCKALREEGIEVILLNSNPATIMTDFKVADRVYIEPMTLEACEEIIKKERPQGIIA 87

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +   Q     ILE   +    + +    ++ D+ + K+++     P+  S  
Sbjct: 88  TLGGQTALNLACQLSESGILEKYNVKLLGTSVETIEMAEDREKFKKLMEDIKEPMAESEI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    I  P +++P       G  +   ++ +        + +   Q+L+E+
Sbjct: 148 VTTIEAALNFAKTIGYPVIVRPAYTLGGTGGGIADNEEQLKEIAHSGIALSPIGQILVEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I +   +       ++  +        +  + Y  ++  
Sbjct: 208 SLLG-YKEIEYEVMRDSVGTCITICNMENIDPVGVHTGDSIVVAPTQTLNDEQYHLLRTA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPE---MAA- 279
           +      +   G     F   P     + +E+N  P ++  S        +P     A  
Sbjct: 267 SLKIIDNLKIEGGCNVQFALSPYDNSYYVIEVN--PRVSRSSALASKVTGYPIAKVAAKI 324

Query: 280 YAGYSFRELLLWMVEDASC 298
             GYS  E++  + +  +C
Sbjct: 325 AIGYSLFEIINPITKKTAC 343



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 104/299 (34%), Gaps = 36/299 (12%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           CA AL++ G +   I         D D S  L    L  +   N++              
Sbjct: 575 CAMALKEMGIEAIMINNNPETVSTDFDTSDKLYFEPLTLESVLNIIEVEKPMGVIAQFGG 634

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                + A L+   +    +   +  ++ D+   +  +   G+                +
Sbjct: 635 QTSLNLVAGLQHFGVNILGTSTESLDIAEDRSSFEAFLEKLGIERPMGKTAVNLEEARTA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
              I  P +I+P        +++++  +     +  +      ++ + I++Y++G E+  
Sbjct: 695 IKEIGFPALIRPSYVIGGEAMMIVRNQEQFEHYMSTALRVVSNEEPILIDKYIEGKEVEI 754

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAI 238
             +G  +     + V     +       S +S  + P K   ++  +++Q+ +      +
Sbjct: 755 DGIGAVTEKGYALKVIGIMEHIERAGIHSGDSMTIYPPKNLSEVVLEKIQKYSRAIADGL 814

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              G+    ++      +V+ +E+N +   T     P  +   G +       +VE+A+
Sbjct: 815 KVIGMINIQYVV--KDEQVYVIEVNPRASRT----VPIFSKATGVN-------VVEEAT 860


>gi|332074887|gb|EGI85359.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA41301]
          Length = 1058

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTRLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAIAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|210623079|ref|ZP_03293566.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275]
 gi|210153882|gb|EEA84888.1| hypothetical protein CLOHIR_01516 [Clostridium hiranonis DSM 13275]
          Length = 450

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 15/234 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  +   L+ D       G   E+       +   I +         L  DK ++++ +
Sbjct: 67  NILYIAEKLECDAIHPGF-GFLSENPEFVRRCKEKNIIFIGPSEEQMVLMGDKSKARRTM 125

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVPV P     +            I  P +IK   GG   G+ ++ + + +      
Sbjct: 126 QKLGVPVVPGSKAVLKDKEEAKKMAEEIGYPVMIKASAGGGGRGMRIVHQPEDLEKSFEI 185

Query: 157 -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 S + +GD  + +   +   +   V GD   +   +            + +    
Sbjct: 186 AKSEAISYFKNGDLYMEKFIQNPRHIEVQVFGDKFGNAIHLGERDCSMQ----RRNQKMI 241

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +  +  K +   A  A +     G    +F+ D      +++E+N +
Sbjct: 242 EESPSCYLNDEERKGLYESALKAVKGTNYEGAGTVEFIVDKDKN-FYFIEMNTR 294


>gi|237755850|ref|ZP_04584447.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237691986|gb|EEP60997.1| pyruvate carboxylase [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 499

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 98/314 (31%), Gaps = 48/314 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54
                 A ++ G K   I                        +   L + +  DLA    
Sbjct: 40  ATRIIRACKELGIKTVAIYSEADAKSIYVKKADEAYLIPGDPIQAYLNYFRIVDLAKQTK 99

Query: 55  FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            + +H   G   E+           I +        AL  DKM +K+ +   GV + P  
Sbjct: 100 CDAIHPGYGFLSENPEFAEYCVKQGIIFIGPKPEHIALFGDKMAAKKKMRELGVSILPGS 159

Query: 112 LVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
                      +    I  P ++K   GG   G+ +++ +         +       +  
Sbjct: 160 DEPISDLKKAKEIASEIGYPVILKAAYGGGGRGMRIVRSESEFETLFQSAYNEAKKFFGK 219

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           GD  + +   +   +   +M D   +V  +            +             +  +
Sbjct: 220 GDVFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQ----RRHQKIVEIARSPSLDEE 275

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + KE+ R +  A   +G   +   ++L D  +   +++E+N +  +       EM    G
Sbjct: 276 VKKELYRTSVKAMFKVGYENVGTIEYLVDE-NNNFYFIEMNTR--LQVEHTVTEM--VTG 330

Query: 283 YSFRELLLWMVEDA 296
               +++  M+E A
Sbjct: 331 I---DIVQKMIEIA 341


>gi|255038681|ref|YP_003089302.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
 gi|254951437|gb|ACT96137.1| D-alanine--D-alanine ligase [Dyadobacter fermentans DSM 18053]
          Length = 566

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/224 (19%), Positives = 74/224 (33%), Gaps = 64/224 (28%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK---------- 50
           + +  GG S ERE+S + GK     L+ + F+   + VD     +L   +          
Sbjct: 3   IGIFFGGPSREREISYAGGKTAFEYLDKSLFEPVPVFVDSFGRFILLQNELMYLSEIREF 62

Query: 51  ------------------------------------------PDLAFNVLHGNFGEDGLV 68
                                                      D AF  +HG   EDG +
Sbjct: 63  YPAPGIQKDGFKTYVESFPELAAAPVPSEIGKQINPSEFKQYFDFAFLAMHGPDCEDGAI 122

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVV----------SSCGVPVCPSILVNRFTM 118
           Q +LE  +IPY+  G++ SA+ +DK+    ++           +                
Sbjct: 123 QGLLEWYKIPYSGPGLMGSAVGIDKILQNDMIALVNGQEKKSWTLKYSQWVPRDYPLLFQ 182

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKD--QSIPLDLLQSSSW 160
             +  +  P V K    GSS+G+ ++K D  +     + Q    
Sbjct: 183 VLKKHLGLPLVFKAPHQGSSIGVAIVKDDSLEEFIAAVNQCFFQ 226



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/141 (21%), Positives = 57/141 (40%), Gaps = 5/141 (3%)

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDV----TEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           DQ+L+E++V G E +CG +               +   + + +  KY    S    P   
Sbjct: 297 DQVLVEEFVSGQEFSCGCIQFDDGSPLALPPSEVIKMVEVFDFNTKYKPGASRKRTPVGT 356

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            L+  +E+Q++     + +G     R D    P    +   + N  PGM+P S   +  A
Sbjct: 357 TLEKNREIQQMIAATFRQLGIDACVRIDGFLKP-DGTILLHDPNTIPGMSPTSFIFKQMA 415

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G +  + L ++V  +   R
Sbjct: 416 EIGLTVTQALTYLVRQSLRER 436


>gi|221060811|ref|XP_002261975.1| carbamoyl phosphate synthetase [Plasmodium knowlesi strain H]
 gi|193811125|emb|CAQ41853.1| carbamoyl phosphate synthetase, putative [Plasmodium knowlesi strain
            H]
          Length = 2169

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 33/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAH--------- 48
            G S E +    S   C   +     K   I         D D S  L             
Sbjct: 1647 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1703

Query: 49   ---LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                K         G    + +       + I  T +  +    + +K  +         
Sbjct: 1704 YNFEKSHGVIIAFGGQTSNNLVFSLYKNSVNILGTSAKSVDCCENRNKFSNLCDSLKIDQ 1763

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           +   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1764 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 1823

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 1824 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1881

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    +++   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 1882 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1935

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 1936 IDLATRIL 1943



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 650 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 709

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 710 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESIMITENRSMFAEKLREINEIIAPYGS 769

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 770 AKNVEQAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELVKK-CKEIFLQTDNEIFIDK 828

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 829 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNHEYYKFREI 887

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 888 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 939


>gi|320528991|ref|ZP_08030083.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis
           F0399]
 gi|320138621|gb|EFW30511.1| carbamoyl-phosphate synthase, large subunit [Selenomonas artemidis
           F0399]
          Length = 1075

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++A  KPD     
Sbjct: 30  GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLSEIIAKEKPDGLLAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ           +E+  T    +  A   ++ +         +P    +
Sbjct: 90  LGGQAGLNLAVQLAEKGILEQHGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 150 EDVHSAVEFANKIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEFEVIRDGRDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDYE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELGIEGGCNAQYALDTQSDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 30/294 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I           D+             V  ++   KPD       G   
Sbjct: 582 ALRSMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVDKEKPDGIIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         L +  T    +  +   ++       +    P   S+      +     
Sbjct: 642 INLAAALERAGLRVYGTSVDDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAVAGAKR 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMQRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +P  +   +         A+  +G+
Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+      +VF +E+N +   T     P ++     +   +   +   AS
Sbjct: 819 LNIQFVVAH--DEVFIIEVNPRSSRT----VPFLSKITNVNMVSVATQVAMGAS 866


>gi|153954992|ref|YP_001395757.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri
           DSM 555]
 gi|219855435|ref|YP_002472557.1| hypothetical protein CKR_2092 [Clostridium kluyveri NBRC 12016]
 gi|146347850|gb|EDK34386.1| CarB2 [Clostridium kluyveri DSM 555]
 gi|219569159|dbj|BAH07143.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1072

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G +   ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQACEAIKKEGIETVLVNSNPATIMTDKNIAHKTYVEPLTVESLEAIIKRERPDGVLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G    +  ++     IL+   +        +   + D+   ++        + +   
Sbjct: 89  GFGGQTALNLAMELGKLGILKKYNVELLGIKTESIKNAEDRESFKNLMEEIEEPIALSTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +S P +I+P       G  +    +            +  +Q+L+EQ
Sbjct: 149 ATDLEQCKSFLDKVSLPIIIRPAYTLGGTGGGIADNYEEYLEICKNGLEESPINQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +                 + Y+ ++R 
Sbjct: 209 SLAGWKELEYEIMRDKKDNCMVVCNMENLDPVGIHTGDSIVVAPSQTLTDRE-YQMLRRS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     F  +P   +   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 SIKIIRKLKIEGGCNIQFALNPSGNEYMVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 94/278 (33%), Gaps = 31/278 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I           D+             V  V+   K D       G   
Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFDPLYIDDVMNVINEEKVDGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + +  T    +  A   +K R      +   P+  S+   +        
Sbjct: 640 LNLSKKLNDRGVNLLGTSFESIDLAEDREKFRILLKKLNINSPIGGSVTSLKEAYKLVSE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+   + +   L ++ + +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVIVRPSYVIGGRAMKVVYNPEELERYLKEAVNLSKEHPVLVDKYILGREIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +      + +P  + + ++       + +  +G+
Sbjct: 760 DGQDLIIPGIMEHVERTG---VHSGDSIAIYPASDLPEKVCQRIEEYTVNIARELNVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
               + FD    K++ +E+N       P ++ V+  P 
Sbjct: 817 LNVQYAFD--GDKIYVIEVNPRASRTVPILSKVTDVPM 852


>gi|297617745|ref|YP_003702904.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297145582|gb|ADI02339.1| carbamoyl-phosphate synthase, large subunit [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 1068

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL  AG K   +         D D              V  ++    P+       G
Sbjct: 578 CVWALRQAGIKAIIVNNNPETVSTDFDTSDRLYFEPLVWEDVMNIIEEENPEGVIVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     ++I  T    +  A + D+            P   S+      ++ 
Sbjct: 638 QTAINLAQQLQQAGVKILGTSFESIDRAENRDRFDELVESLGIPRPPGGSVTSIEGGLEV 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++  +  +   +  +   +    +L+++Y+ G EL   
Sbjct: 698 AERIGYPVLVRPSYVLGGRAMEIVYNETEMVEYMRGAVKVSREFPILVDKYLGGKELEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +       +I  D  +++        +A+  
Sbjct: 758 AISDGQDVLIPGIMQHIERAG---VHSGDSIAVYPAHQISQDTKEKIVDYTTKLARALAV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +G+    F+      +++ LE+N +   T     P ++   G    +L   ++
Sbjct: 815 KGLINIQFV--EFEGELYVLEVNPRSSRT----VPYISKVTGIPMVKLATDII 861



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACRALKEEGVQVVLVNSNPATIMTDSNIADRVYLEPLVPEVVARILRKEQPDGIIAN 89

Query: 58  LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G              ILE   IP   + + A   + D+   +         VP    +
Sbjct: 90  LGGQVGLNMALALHKMGILEETGIPLLGTPLEAIQKAEDRELFKKTMQEIGEPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G      +  + +   +    +   Q+LIE+ 
Sbjct: 150 EDVEAAVEFAQRIGYPVIVRPAYTLGGTGGGTAYSEGELRVIATKGLKMSVIHQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +       ++  +        +  + Y+ ++  +
Sbjct: 210 VAGFKEIEFEVMRDANDNCITICSMENIDPMG-IHTGDSIVVAPALTLNDEEYQMLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  +P S + + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LKIIRALGIAGGCNIQFALNPFSSEYYVIEVN--PRVSRSS--ALASKATGYPIARVTTK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|187934720|ref|YP_001884325.1| carbamoyl phosphate synthase large subunit [Clostridium botulinum B
           str. Eklund 17B]
 gi|226700925|sp|B2THH3|CARB_CLOBB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|187722873|gb|ACD24094.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           B str. Eklund 17B]
          Length = 1069

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +V  I+ +                       +  V+   +PD    
Sbjct: 29  SGTQACEALKSEGIEVVLINSNPATIMTDKEVADKVYLEPLTLEFIEKVIVKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +  V+      LE  ++    + I +     D+   + +++     V     
Sbjct: 89  GMGGQTGLNLAVELHDSGILEKYDVKVIGTSIESIKEGEDRELFRDMMNRIGEPVIKSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D  + I  P +++P       G  +   ++ + + L      +   Q+L+E+
Sbjct: 149 VTDLQSGIDFANKIGYPVIVRPAYTLGGSGGGIADDEEELRIILESGLQLSTIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SVKGWKEIEYEVMRDSYGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++G  G     F  +P + +   +EIN  P ++  S     +   GY   +L  
Sbjct: 268 SINIINSVGIEGGCNVQFSLNPNTFEYAVIEIN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 88/281 (31%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+    +   +           D+             V  ++    P        G
Sbjct: 580 CVKALKKLDIETIIVNNNPETVSTDFDISDKLYFEPLTEEDVLNIIEKENPYGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++   T +  +  A   +K            P    I      ++ 
Sbjct: 640 QTAIKLANFLKEKNIKTLGTTADQIDMAEDREKFDELLERLDISRPKGKGIWSVEEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  +   +  + +LI++Y+ G E+   
Sbjct: 700 AERLGFPVLVRPSYVIGGQGMEITHDEEELIFYLTNAFVKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P++    +I  ++         AIG
Sbjct: 760 AISDGENILI----PGIMEHLERAGVHSGDSVTMYPSQNVCDEIKGKILEYTKKLALAIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EFEGNLYVIEVNPRASRTVPYISKVSKVP 854


>gi|108804314|ref|YP_644251.1| carbamoyl-phosphate synthase large subunit [Rubrobacter
           xylanophilus DSM 9941]
 gi|122975987|sp|Q1AVY9|CARB_RUBXD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|108765557|gb|ABG04439.1| carbamoyl-phosphate synthase large subunit [Rubrobacter
           xylanophilus DSM 9941]
          Length = 1054

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  V+   +PD    
Sbjct: 29  SGTQACRALKEEGYRVILVNSNPATIMTDPEMADTTYIEPLRAETVAEVIRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V+      LE   +    + I +   + D+   ++ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELSEAGVLEEYGVQLLGASIPSIQKAEDRQLFREAMERIGLRVPESRT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    I  P +I+P       G  V +   ++   +      +    +L+E+
Sbjct: 149 VRSVPEAEELAERIGFPLIIRPSFTLGGTGGSVAEDLDALRASVRDGLDASPVRSVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +                   
Sbjct: 209 SVAGWKEFELEVMRDLADNVVIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQSLRTAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P     + +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIREIGVSTGGSNIQFAVNPEGDDFYVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|160914208|ref|ZP_02076429.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991]
 gi|158433835|gb|EDP12124.1| hypothetical protein EUBDOL_00216 [Eubacterium dolichum DSM 3991]
          Length = 1065

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 89/288 (30%), Gaps = 33/288 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C   + + G++   I+ +                       V  V+   KP        G
Sbjct: 577 CVKTIREMGYEAIVINNNPETVSTDYSISDKLYFEPLTIEDVMHVIDLEKPLGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  T    +  A    +            P   +       ++ 
Sbjct: 637 QTAINLADKLVARGVKILGTSLEAIDRAEDRHEFEQMLRKLDIPQPTGDTAYEVEKAIEI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I+ P +++P        + ++  D+ + + +       +H   +L+++YV G E+  
Sbjct: 697 ANRITYPVLVRPSYVLGGRAMEIVHNDEDLRVYMATAVQEISHDAPILVDKYVIGKEMEV 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V PA      +   +   A    +  
Sbjct: 757 DAICDGEHVFI----PGIMEHIERAGVHSGDSISVYPAPTASQKVKDTIVDYAIRIGKGF 812

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA 281
              G+    F+ D    KV+ LE+N       P ++ ++  P      
Sbjct: 813 HFVGLFNIQFIVD-KDEKVYVLEVNPRSSRTVPFLSKITGVPMSYVAT 859



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/297 (15%), Positives = 88/297 (29%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G    ++L + G++V  I+ +                          ++   +PD     
Sbjct: 30  GTQACTSLREEGYEVILINSNPATIMTDSVIADRVYIEPLTLEFASRIIYKERPDAVLGS 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+           +EI  T    +  A   DK R         VP    +
Sbjct: 90  LGGQTGLNLVVELAESGILDECGVEILGTELDAIEKAEDRDKFRELMYELGEPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  +    P V++P       G       + + +        +   Q LIEQ 
Sbjct: 150 HSVEEAVEFANTNGYPVVVRPAFTLGGTGGGFANNLEELEVICENGLKLSPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +       ++  A
Sbjct: 210 IAG-YKEIEYEVMRDNADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLTDRECGMMRAAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L
Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKL 321


>gi|154496701|ref|ZP_02035397.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC
           29799]
 gi|150273953|gb|EDN01053.1| hypothetical protein BACCAP_00993 [Bacteroides capillosus ATCC
           29799]
          Length = 1098

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  +           D+            SV  V+   +PD     
Sbjct: 30  GTQACRALKEEGVEVVLVNSNPATIMTDKDIADHVYIEPLNIASVEQVIEKERPDSILPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  +       L+   +    +   +   + D+   K  + + G P   S  +
Sbjct: 90  LGGQTGLNLAMNLHEQGILQKYGVRLLGTSPESIRKAEDRQGFKDAMEAIGQPCVTSDVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   + S+     +    +   Q+LIE+ 
Sbjct: 150 ESVEDAVAFAGSIGYPVIVRPAYTLGGTGGGIAYDEPSLREIADRGIHLSRVGQVLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +     +              +    ++ +++ +
Sbjct: 210 ISGWKEIEFEVMRDSAGNVIQICSMENIDPVGVHTGDSIVVAPT-QTLANKEFQMLRKAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LDIISALEIEGGCNVQLALNPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/288 (12%), Positives = 89/288 (30%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  G++   I         D D              V  V+   KP  A     G   
Sbjct: 613 AFKRLGYETIIINNNPETVSTDFDVADKLYFEPLTPEDVEAVVELEKPWGAVVQFGGQTA 672

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  + +A   ++                ++      + +   
Sbjct: 673 IKLAQALTDMGVPILGTPADGVDAAEDRERFDEILEQCGIPRAKGRTVFTTEEALTAAKE 732

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D++I   +   +       +L+++Y+ G EL    + 
Sbjct: 733 LGYPVLVRPSYVLGGQGMEIAYSDKNIIDFMKIINMTVQEHPILVDKYLMGRELEVDGVF 792

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +       + R      + +G  G+
Sbjct: 793 DGEDILLPGIMEHVERSG---VHSGDSIAVYPPLHLEDKHKDMILRYTRDMAKHLGVIGL 849

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + ++    + +++ +E+N +   T     P ++   G    +L   
Sbjct: 850 INAQYIL--YNDEIYVIEVNPRSSRT----IPYISKVTGVPIIDLATK 891


>gi|313200738|ref|YP_004039396.1| urea carboxylase [Methylovorus sp. MP688]
 gi|312440054|gb|ADQ84160.1| urea carboxylase [Methylovorus sp. MP688]
          Length = 1208

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 64/183 (34%), Gaps = 16/183 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+ +I  ++ +          +  +      Y++      
Sbjct: 146 HAARIGYPVMLKSTAGGGGIGMRLIWGEEELAEAFASVQRLSRANFKESGLYLEKYVEAA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +           V         ++  +       PA    + I +++   A     AI
Sbjct: 206 RHIEVQIFGDGAGHVVALGERDCSVQRRNQKVIEETPAPNISEAIRQQLAETAVRLASAI 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           G R     +F++D  S   ++LE+N +     G+T +         +G    +L+ WM+ 
Sbjct: 266 GYRSAGTVEFVYDNASGDFYFLEVNTRLQVEHGVTEL--------VSGV---DLVGWMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 LAA 317


>gi|312897591|ref|ZP_07757008.1| carbamoyl-phosphate synthase, large subunit [Megasphaera
           micronuciformis F0359]
 gi|310621224|gb|EFQ04767.1| carbamoyl-phosphate synthase, large subunit [Megasphaera
           micronuciformis F0359]
          Length = 1065

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 94/297 (31%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  I+        D  +                V+   +PD     
Sbjct: 28  GTQACRALKEEGLEVVLINSNPATIMTDEDIADRVYIEPITLDYVAEVIEKERPDGLLAT 87

Query: 58  LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G        +     +LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAIELAENGVLEKYGVKLLGTKLSAIEEAEDRELFKKAMKDINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              + ++D  + I  P +++P       G  +   +  + +   +    +   Q+L+E+ 
Sbjct: 148 ENVQESVDFANSIGYPVIVRPAYTLGGTGGGIAHDEDELFMIATRGIKLSPIHQILVERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                 + +   +       ++  +        +    Y+ ++  +
Sbjct: 208 VAGW-KEVEYEVMRDKADNCVIICNMENIDPVGVHTGDSIVVAPSQTLNDLQYQLLRTAS 266

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               + +   G     +  DP S + + +E+N  P ++  S     +   GY   ++
Sbjct: 267 VDIIRRLKIEGGCNVQYALDPNSNRYYVIEVN--PRVSRSS--ALASKATGYPIAKV 319



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 80/255 (31%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  V+   KP        G    +         + +  T    + 
Sbjct: 604 DSLYFEPLTV---EDVMAVIDKEKPVGVICQFGGQTAINLAAPLAARGVNVLGTSVAGMD 660

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +K            P       +   M     +  P +++P        + ++  
Sbjct: 661 RAEDREKFDDLLTKLDIPRPAGRIATSDTEAMKVASELEFPLIVRPSYVLGGRAMEIVYT 720

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   L ++   +    +LI++Y+ G EL    + D +       + + +       +
Sbjct: 721 ESELERYLREAVIASPDHPILIDEYMVGRELEVDAVSDGTDVFIPGIMEQVERAG---VH 777

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263
           S  +     P ++  D+  ++          +  +G     F+      K++ +E+N   
Sbjct: 778 SGDSIAVYPPQQLDRDMIDQIVDYTTRITLELQVKGSVNIQFVLAR--GKLYIIEVNPRS 835

Query: 264 --VQPGMTPVSIFPE 276
               P ++ V+  P 
Sbjct: 836 SRTVPFLSKVTRVPM 850


>gi|229918568|ref|YP_002887214.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
 gi|259585680|sp|C4L5W3|CARB_EXISA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|229469997|gb|ACQ71769.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
          Length = 1067

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 92/297 (30%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  +         D                V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILVNSNPATIMTDPTTADRVYIEPLEPEFVERIIRQERPDALLAT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +   +     +               +  A   ++ R+       GVP    +
Sbjct: 90  LGGQTGLNLAFELDKRGVLRDCGVELLGTKLSAIVQAEDREQFRNLMFELGHGVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G  +    +S    +      +   Q+L+E+ 
Sbjct: 150 HTLESAWGFAERIGYPIIIRPAYTLGGTGGGIAHDRESFEQIVESGLKASPVTQVLLEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G++     +   S D   I     +F    +                 D Y+ ++ ++
Sbjct: 210 IAGMKEVEFEVMRDSSDQAIIVCAMENFDPVGVHTGDSIVFAPTQTLSDRD-YQMLRSVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +A+G  G     F  DP S   + +E+N  P ++  S     +   GY   +L
Sbjct: 269 LDIIRALGIEGGCNIQFALDPDSFTYYVIEVN--PRVSRSS--ALASKATGYPIAKL 321



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 23  ASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGN 61
              + DAG++   I+                         V  V+ +  P        G 
Sbjct: 578 IDTIRDAGYEAIIINNNPETVSTDFSISDRLYFEPLTTEDVLEVIENENPLGVIVQFGGQ 637

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +         ++I  T    +  A       +         P   +       +   
Sbjct: 638 TAINLAASLEANGVKILGTTLEDIDRAEDRKAFEATLSAERLAQPPGKTATNVEEAVACA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P        + ++ +   +   +  +   +    +LI++Y+ GIE+    
Sbjct: 698 NELGYPVLVRPSYVLGGRAMEIVYEQSELERYMRHAVIASKDRPVLIDRYLTGIEIEVDA 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D +       +   +       +S  +     P ++  ++ ++V        +A   +
Sbjct: 758 ICDGTDVYIPGIMEHIERAG---VHSGDSIAVYPPQRLSEELKQKVVDYTIKLAKAFRIK 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           G+    F++      ++ +E+N +   T     P ++   G  
Sbjct: 815 GLLNIQFVYA---DDLYVIEVNPRASRT----VPFISKVTGLP 850


>gi|27262158|gb|AAN87360.1| Carbamoyl-phosphate synthase large chain [Heliobacillus mobilis]
          Length = 1083

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      S+  ++   +PD     
Sbjct: 30  GTQACKALKEEGLEVVLVNSNPATIMTDANIADHVYIEPLNVPSLTRIIDQERPDGLLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPSI 111
           L G  G +  V       LE  ++    + I A   + D+   KQ +   +  +P+   +
Sbjct: 90  LGGQTGLNLAVALSQAGVLEKYQVRLLGTSIEAIKKAEDRELFKQTMQDLNEPIPLSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   +    P +I+P       G  +   +  +          +   Q+L+EQ 
Sbjct: 150 SSLDQAVAFANKTGYPLIIRPAYTLGGTGGGIAHNETELLTICDMGLKKSMIGQVLLEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + +         +F      ++  +        +    Y+ ++  A
Sbjct: 210 VAGWKEIEYEVMRDANNNCITICNMENFDP-VGIHTGDSIVVAPSQTLTDKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     F   P   +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRELKVEGGCNVQFALHPFKCEYIVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 89/294 (30%), Gaps = 34/294 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D G +   I         D D              V  ++   KP+       G   
Sbjct: 580 ALRDCGVESIIINNNPETVSTDFDTADKLFFEPLALEDVLNIVEKEKPEGVVVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    + +A    K  +             +             
Sbjct: 640 INLAAGLSEHGVKILGTSLEGIDAAEDRKKFEALLKSLGIPQSEGKTATSAAEAKAIAEE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++  + +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 700 LGFPVLVRPSYIIGGRAMEVVENVKDLESYMETAVRISPKHPILVDKYIRGKEVEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +        +       +S  +     P  +     + +        +A+   G+
Sbjct: 760 DGTDTLIPGIFEHIERAG---VHSGDSMAVYPPQTLTTAERETIVDYTLRIAKALQVVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
               ++ D    KV+ LE+N       P ++ V+  P +        G S  EL
Sbjct: 817 LNIQYVVDNQ-GKVYVLEVNPRASRTVPILSKVTGVPMIKVAVQIMLGKSLAEL 869


>gi|229824730|ref|ZP_04450799.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC
           49176]
 gi|229791059|gb|EEP27173.1| hypothetical protein GCWU000182_00078 [Abiotrophia defectiva ATCC
           49176]
          Length = 1073

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 98/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLVNSNPATIMTDKDIADKVYIEPLNVAVVKKIIKEEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++      L+   +    +  L    + D+   ++        V     +
Sbjct: 90  LGGQAGLNLAMELEESGFLKENNVKLIGTTALTIKKAEDRLEFKNTMEKLKEPVAASTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  + + + S+ L        +   Q LIE+ 
Sbjct: 150 EDVEAAVEFAKEIGYPIVVRPAYTLGGSGGGIAEDETSLRLICENGLRLSRVGQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    ++ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGRGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEHQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIDELGITGGCNVQYALNPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   R
Sbjct: 325 IALGYTLDEIKNAVTGR 341



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 95/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  A   AG++   I         D D +  L    L P+   NV+              
Sbjct: 578 CVWAFAKAGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVRNVVELEKPYGAVVQFGG 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDS 120
                +   L  + +    +       + D+     +++  G+P      +      ++ 
Sbjct: 638 QTAIGLTKALMEMGVKILGTSAEDVDAAEDRELFDNILNETGIPRASGGTVFTAEEAVEV 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   D  I   +   +       +L+++Y+ G EL   
Sbjct: 698 ANRLGYPVLVRPSYVLGGAGMRIAISDSDIREYINIINRNVQEHPILVDKYLMGEELEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +           + +      I  ++ K ++       +++  
Sbjct: 758 AVCDGEDILIPGIMQHIERAGIHSG---DSISVYPSQNISEELIKRIEDYTRKLAKSLHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++   G    EL   ++
Sbjct: 815 IGLVNIQFII--YENEVYVIEVNPRSSRT----VPYISKVTGIPVVELAAKVI 861


>gi|221059041|ref|XP_002260166.1| biotin carboxylase subunit of acetyl CoA carboxylase [Plasmodium
           knowlesi strain H]
 gi|193810239|emb|CAQ41433.1| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium knowlesi strain H]
          Length = 2921

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 30/199 (15%), Positives = 69/199 (34%), Gaps = 14/199 (7%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +    +I      +     I  P +IK  +GG   GI  ++ ++ I     Q        
Sbjct: 569 IYNKSTIHSLDACIKECQRIGYPVMIKASQGGGGKGIRKVENEEEIKKAYTQVQMELPNS 628

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + + +    +     +      D+       S       +          P+ +P +I+
Sbjct: 629 PIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSVVPPNIF 685

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPE 276
           +E+++ +    + I  RG    ++L+D   +  F+LE+N       P   G+T  ++   
Sbjct: 686 REMEKASIRLTKMIKYRGAGTIEYLYDQEKQTYFFLELNPRLQVEHPVSEGITNTNLISI 745

Query: 277 MAA-YAGYSFREL--LLWM 292
                 G   + +  +  +
Sbjct: 746 QLQVAMGIPLQNIDDIRRL 764


>gi|88856235|ref|ZP_01130895.1| carbamoylphosphate synthase, large chain [marine actinobacterium
           PHSC20C1]
 gi|88814554|gb|EAR24416.1| carbamoylphosphate synthase, large chain [marine actinobacterium
           PHSC20C1]
          Length = 1104

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  +         D D +            +  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVILVNSNPATIMTDPDFADATYIEPITWQVIESIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV------SSCGVPVCPS 110
            L G    +  ++     +   Y    I A+  +++K   +Q+           V     
Sbjct: 89  TLGGQTALNAAIELDAHGILEKYNVELIGANLEAINKGEDRQIFKQLVLDCGADVAKSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P VI+P      LG       + +   +      +    +L+E+
Sbjct: 149 ATTVAEAVDFAEDLGYPLVIRPSFTMGGLGSGFAYTREELVRMVTDGLHQSPTTSVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D T +     +     +      +          +        
Sbjct: 209 SILGWKEYELELMRDTADNTVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQNLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP   +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IDIIRAVGVDTGGCNIQFAIDPADGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|322435919|ref|YP_004218131.1| urea carboxylase [Acidobacterium sp. MP5ACTX9]
 gi|321163646|gb|ADW69351.1| urea carboxylase [Acidobacterium sp. MP5ACTX9]
          Length = 1227

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 16/183 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG  +G+ V      +          +  +      Y++      
Sbjct: 146 QAETLRYPVMLKSSGGGGGIGMKVCHSAPELEEAYDSVLRLSKANFGDSGVYLEKYVARA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +        +  V          +          PA        K +   A L  +A+
Sbjct: 206 RHIEVQIFGDGQGNVIALGERDCSAQRRHQKVLEETPAPGLSAATRKHLYDSAVLLGKAV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                   +F++D  +   ++LE+N +     G+T            G    +L+ WMV+
Sbjct: 266 DYANAGTVEFIYDEDTTDFYFLEVNTRLQVEHGVTE--------QVTGI---DLVEWMVQ 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|225011713|ref|ZP_03702151.1| carbamoyl-phosphate synthase, large subunit [Flavobacteria
           bacterium MS024-2A]
 gi|225004216|gb|EEG42188.1| carbamoyl-phosphate synthase, large subunit [Flavobacteria
           bacterium MS024-2A]
          Length = 949

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +   I         D              +S+  +L   K D    
Sbjct: 29  SGSQALRSLREDGIETILINSNPATIMTDPTMADHVYLKPLNTKSIIEILKKHKVDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPS 110
            + G    +  ++A      +   +      I A  ++ D+ + ++++   G+P+    +
Sbjct: 89  TMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAINITEDREKFRELMLEIGIPMAPQAT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P VI+        G  ++ K+Q     L +    +   +++I++
Sbjct: 149 ANSFLKGKEIAQEFGFPLVIRASFTLGGDGASIVYKEQDFDELLTRGLEISPIHEVMIDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   I     +     +      +             +     
Sbjct: 209 ALIGWKEYELELLRDSNDNVVIICSIENMDPMGIHTGDSITVAPSMTLSDKTYQRMRDMA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 269 IHMMRSIGDFAGGCNVQFAVSPDDKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/259 (12%), Positives = 78/259 (30%), Gaps = 11/259 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 622 DKLYFEPVFW---EHIFDIIQHEKPEGVIVQLGGQTALKLAEKLDRYGIKIIGTSFKSLD 678

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    +    P           ++    +  P +++P       G+ ++  
Sbjct: 679 LAEDRGSFSTLLKDNDIPFPEFGVAQTADQAIELADGLDFPILVRPSYVLGGQGMKIVIN 738

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   ++        ++LL++ Y+DG  + C        +   I           +  
Sbjct: 739 KKELEAHVVDLLQKIPNNKLLLDHYLDG-AIECEADAICDGENVYIIGIMEHIEPCGIHS 797

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              N+T  +       + +       +A  A+   G+    +       KV+ +E N + 
Sbjct: 798 GDSNATLPVFNIGEYVLQQIKDHTKKIAL-ALNTVGLINIQYAV--KDEKVYVIEANPRA 854

Query: 267 GMTPVSIFPEMAAYAGYSF 285
             T     P +A      +
Sbjct: 855 SRT----VPFIAKAYNEPY 869


>gi|303229566|ref|ZP_07316354.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a]
 gi|302515691|gb|EFL57645.1| pyruvate carboxylase [Veillonella atypica ACS-134-V-Col7a]
          Length = 1148

 Score = 59.5 bits (142), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +P+ P     +       +       P +IK + GG   G+  + + + + 
Sbjct: 122 ARTQAKLADIPMIPGSDGALRDFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            K 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP     +  K V   A    + +G       +FL        +++E+N +
Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNPR 295


>gi|33519755|ref|NP_878587.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia floridanus]
 gi|33504100|emb|CAD83362.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia floridanus]
          Length = 450

 Score = 59.5 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 81/284 (28%), Gaps = 39/284 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK----------------PDLAFNV--- 57
                 A ++ G K   I   +DR +  VL   +                P +  +    
Sbjct: 14  ALRILRACKELGIKTVAIHSTIDRDLKHVLLSDETICIGLPPIINSYLNIPSIISSAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS-------- 102
               +H   G   E+      +E     +         L  +K+ +  V+          
Sbjct: 74  GASGIHPGYGFLSENADFAEQVERSGFIFIGPSPETIRLMGNKISAISVMKKSGVKPIPG 133

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                   I    F  +    I+ P +IK   GG   G+ ++     +   +  +   + 
Sbjct: 134 WNYENNKKINNIDFCNNHNININYPVIIKSAYGGGGHGMRIVTNKSDLKNAIQTTQIESK 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                   Y++        +    L   +            ++          PA  I  
Sbjct: 194 KIFNNDTIYIEQYLTQSRHIEIQILSDGKGNAIYLTERDCSIQRRHQKIIEETPAWGITP 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   +        Q I  RG+   +FL+   +   F++E+N +
Sbjct: 254 EMRTFIGECCVKVCQEINYRGVGTFEFLY--ENGNFFFIEMNTR 295


>gi|306829264|ref|ZP_07462454.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           ATCC 6249]
 gi|304428350|gb|EFM31440.1| carbamoyl-phosphate synthase, large subunit [Streptococcus mitis
           ATCC 6249]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       + +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVLAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGENVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLNCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKELPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVTFAATIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|319442282|ref|ZP_07991438.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           variabile DSM 44702]
          Length = 403

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 81/275 (29%), Gaps = 27/275 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           G+    AL+  G +V  +D                +D    ++V  ++  ++PD     +
Sbjct: 27  GREVTIALQRLGVEVHAVDRYTGAPAQRVADFQYTIDMTDPQAVRALVEQVRPDFVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +  T      +                               
Sbjct: 87  EALATDALAEVEDAGLATVVPTARATQLTMNREGIRTLADKELGLPNSRHVFASTYEEFE 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIE 176
           D    I  P V+KP+   S  G   I+  + I      + S      ++++IEQ+V    
Sbjct: 147 DGVRQIGIPCVVKPVMSSSGKGQSYIRDSEEIAPAWEYAMSGGRVRSERVIIEQFVPFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T              +          PA++  +     + +A     
Sbjct: 207 EITLLTIRSVDPATGEDATWFCEPIGHRQQHGDYVESWQPAQMSEEALGAARSVAARITG 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A+G RG+   +         V++ E++ +P   GM
Sbjct: 267 ALGGRGVFGVELFI--KGNDVYFSEVSPRPHDTGM 299


>gi|312864214|ref|ZP_07724448.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis F0396]
 gi|322517235|ref|ZP_08070114.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|311100215|gb|EFQ58424.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis F0396]
 gi|322124141|gb|EFX95675.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 1059

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860



 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLKQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFATEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|304436900|ref|ZP_07396864.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304370099|gb|EFM23760.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 1075

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++A  KPD     
Sbjct: 30  GSQACRALKEDGLEVVLVNSNPATIMTDTNIAGRVYIEPLTVEFLTEIIAKEKPDGLLAT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ   + +   Y           +  A   ++ +         +P    +
Sbjct: 90  LGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESLIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 150 EDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEFEVIRDGNDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELGIEGGCNAQYALDTKSDQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 26/262 (9%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I           D+             V  +    KPD       G   
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIADKEKPDGIIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     L +  T    +  +   ++       +    P   S+      +     
Sbjct: 642 INLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAAR 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMSRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +   +   +         A+  +G+
Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
               F+      +VF +E+N +
Sbjct: 819 LNIQFVVAH--DEVFIIEVNPR 838


>gi|238926952|ref|ZP_04658712.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
 gi|238885186|gb|EEQ48824.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Selenomonas
           flueggei ATCC 43531]
          Length = 1075

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 100/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++A  KPD     
Sbjct: 30  GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVEFLTEIIAKEKPDGLLAT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ   + +   Y           +  A   ++ +         +P    +
Sbjct: 90  LGGQAGLNLAVQLAEKGILAEYGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESLIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 150 EDVHAAVDFANTIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEFEVIRDGNDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELGIEGGCNAQYALDTKSDQYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/262 (12%), Positives = 79/262 (30%), Gaps = 26/262 (9%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I           D+             V  +    KPD       G   
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIADKEKPDGIIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     L +  T    +  +   ++       +    P   S+      +     
Sbjct: 642 INLAAELERAGLHVYGTSVDDIDRSEDRERFEEVLTETEISRPEGISVTNLDDAVTGAAR 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMGRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +   +   +         A+  +G+
Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLSARVIYTIIDYTKRLAVALHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
               F+      +VF +E+N +
Sbjct: 819 LNIQFVVAH--DEVFIIEVNPR 838


>gi|228478416|ref|ZP_04063024.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           salivarius SK126]
 gi|228250095|gb|EEK09365.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           salivarius SK126]
          Length = 1059

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIELEQPKGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLSKAGVKILGTQVADLDRAEDRDLFEQALKDLDIPQPPGQTATNEEEAVEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMRTAVKASPDHPVLVDSYIIGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKKIQETIADYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATNLI 860



 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILEELGVELLGTKLSAIDQAEDRDLFKQLMEDLEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFASEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|210076310|ref|XP_504800.2| YALI0E35156p [Yarrowia lipolytica]
 gi|199427005|emb|CAG80408.2| YALI0E35156p [Yarrowia lipolytica]
          Length = 1820

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 44/143 (30%), Gaps = 9/143 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVDGIELTCG 180
            P +IK   GG  +G+  + K + +                     +         +   
Sbjct: 770 YPLMIKSTAGGGGIGLQKVDKPEDLKRAFDTVKHQGKSFFGDDGVFMERFVEKARHVEVQ 829

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++GD   +   I            K          PA    +    +   + +  + +  
Sbjct: 830 ILGDGKGNAIAIGERDCSLQRRNQKVIEETPAPNFPA----ETRTRMMNASEMLAKNLNY 885

Query: 241 RGISRSDFLFDPLSRKVFWLEIN 263
           RG    +F+FD    + ++LE+N
Sbjct: 886 RGAGTVEFIFDEKRNEFYFLEVN 908


>gi|154685558|ref|YP_001420719.1| carbamoyl phosphate synthase large subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|154351409|gb|ABS73488.1| CarB [Bacillus amyloliquefaciens FZB42]
          Length = 1031

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                        S+  ++   KPD    
Sbjct: 29  SGTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTTDSIEAIIEKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110
            L G    +  V+      L+   +    + +       D+ + +         VP    
Sbjct: 89  NLGGQTALNLAVKLEEAGVLKKHHVKLLGTSVETIQKGEDREQFRALMKELDQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  + K  ++    + Q+   +   Q L+E+
Sbjct: 149 VDNEEDALRFAESIGFPVILRPAYTLGGKGGGIAKTKEAFQTLIKQALLASPISQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNHTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEEYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLAIISALDVVGGCNIQFAMDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 90/294 (30%), Gaps = 33/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G++   I+                         +  V  H   D A     G    
Sbjct: 585 LQKLGYETIMINNNPETVSTDYEIADRLYFEPLTTEHILNVAEHENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L +    D                 +        +    I
Sbjct: 645 NAAEPLEKAGIPLLGTSFETLDALEDRDLFYQLLDDLDLKHAKGETAYSKEEATEKASRI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++  +  +   L   +   +   +LI+QY+ G EL   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSEAQMSELLENEAGMPY--PILIDQYITGKELEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP   +  D+ + ++  A      +  +GI
Sbjct: 763 GHEVFV----PTYTEHIERAGVHSGDSFAILPGPSVTPDMQRNIKEAAEKIAVKLAFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D     +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVIDDK-GDILVLEVNPRASRT----VPVVSKVMGVPMIPLAARLLAGAS 867


>gi|317057027|ref|YP_004105494.1| carbamoyl-phosphate synthase large subunit [Ruminococcus albus 7]
 gi|315449296|gb|ADU22860.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus albus 7]
          Length = 1351

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 89/291 (30%), Gaps = 30/291 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G+ V  ++                      +  V  ++   KP        G
Sbjct: 577 CVWALKEHGYDVVIVNNNPETVSTDFDTADRLYFEPLTNEDVMNIIRVEKPVGVVVAFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         ++I  T    + +A   ++            P   +++     +D 
Sbjct: 637 QTAIKLTKYLSENGVKILGTPPDSIDAAEDRERFDELLEDLHIKRPEGFTVMTCEEALDV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        +I+   +  I   +         + +LI++Y+ GIEL   
Sbjct: 697 ADKIGYPVLMRPSYVLGGQNMIIAFNEADIKEYMAIILDQGIENPVLIDKYLMGIELEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +           +        +   +  +V   +     ++  
Sbjct: 757 AICDGEEILIPGIMEHIERTGIHSG---DSIAVYPAWNVSDRLIDKVVDCSKRLALSLKT 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G+    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 814 KGLVNIQYLI--YDDELYVIEVNPRSSRT----IPYISKVTGVPMVDLATK 858



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 96/303 (31%), Gaps = 34/303 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ +                      +V  V+   +PD   + 
Sbjct: 30  GTQACRALKQQGLEVILINSNPATIMTDNAMADKIYIEPLTLETVKRVIIKERPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G    +Q      L+   +    +       + D+   K  + S G P  PS +V
Sbjct: 90  LGGQTGLTLSMQLAKEGFLDEYNVKLLGANPETIDKAEDRQLFKDTMESIGQPCIPSKVV 149

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           N             I  P +I+P       G  ++  ++ +          +   Q+L+E
Sbjct: 150 NTVEDAVAFSKEEGIGFPLIIRPAFTLGGTGGGIVNNEEELIEITRNGLYLSPITQVLVE 209

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S           +F      ++  +        +    Y+ ++ 
Sbjct: 210 KCIAGWKEIEFEVMRDSKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRS 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +   G     F  +P + +   +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 AALKIIDTLKVEGGCNCQFALNPETFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AQI 327


>gi|303232062|ref|ZP_07318765.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6]
 gi|302513168|gb|EFL55207.1| pyruvate carboxylase [Veillonella atypica ACS-049-V-Sch6]
          Length = 1148

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+ +         I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEVFARRCGEEGIIFIGPHVEHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +P+ P     +       +       P +IK + GG   G+  + + + + 
Sbjct: 122 ARTQAKLADIPMIPGSDGALRDFAQLEEFAETHGYPLMIKAVNGGGGRGMREVHRKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            K 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP     +  K V   A    + +G       +FL        +++E+N +
Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVT-SDGSFYFIEVNPR 295


>gi|15615458|ref|NP_243761.1| carbamoyl phosphate synthase large subunit [Bacillus halodurans
           C-125]
 gi|22095533|sp|Q9K8V7|CARY_BACHD RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|10175517|dbj|BAB06614.1| arginine specific carbamoyl-phosphate synthase large chain
           [Bacillus halodurans C-125]
          Length = 1047

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                      SV  ++   +PD     
Sbjct: 30  GAQACLALREEGIQVILVNNNPATVMTDEACADVVYFEPLTVASVKNIIERERPDGLLAT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          +         +E+  T    +      +  R         VP    +
Sbjct: 90  LGGQTGLNLAMKLEEAGILEAYNVELLGTPMESIKKGEDREAFRQLMHELHEPVPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D  + +  P +++P       G  + + ++++   +      +   Q LIE+ 
Sbjct: 150 HSVAEAVDFANTVGYPIIVRPAYTLGGAGGGIAESEEALIRIVKGGLELSPIQQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDSNDTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDQEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G     F  DP S++ + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LKIIRTLGIVGGCNIQFALDPDSKQYYLIEVN--PRVSRSS--ALASKATGYPIARMAAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 77/281 (27%), Gaps = 32/281 (11%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
           A +L    F+   I+ +                       V  V+     D     L G 
Sbjct: 583 AKSLRARNFEAIIINNNPETVSTDYETADRLYFEPLAVEDVLNVIEVENVDHVIVQLGGQ 642

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                        + I  T   ++      ++                +       + + 
Sbjct: 643 TAIGLTKGLEEAGVSILGTTQDVIDQLEDRERFYEFMRSVEVPHIPGKTAETKEELLKAA 702

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P       G+ +    + +     +  + +    +L++ Y  G+E    V
Sbjct: 703 QSIGYPILLRPSYVIGGQGMFIASNQEEL-AAFCEDKNHSVTFPILVDAYYPGVEFEVDV 761

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D S           +       +S  +     P  +     ++         + +  +
Sbjct: 762 LTDGSDIFIPGMFEHVEKAG---VHSGDSMAVTPPPTLEAKWKQQAINYTRQIAKGMAYK 818

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+      +++ +E+N       P  +  +  P +
Sbjct: 819 GLFNIQFVL--YDEELYVIEVNPRASRTVPIFSKATSLPLI 857


>gi|296271764|ref|YP_003654395.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter
           nitrofigilis DSM 7299]
 gi|296095939|gb|ADG91889.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter
           nitrofigilis DSM 7299]
          Length = 389

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 72/279 (25%), Gaps = 30/279 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                        +  V+   KPD     +
Sbjct: 23  GKEVIIEAQRLGIETIAVDSYNNAPAQLVANKAYTINMKNKNEILDVIRREKPDYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            IP   +    +    +                  +       
Sbjct: 83  EAINIDALFTAEKEGFHVIPNAEAVN-KTMNRKNIREFAAEELELPTSKYKFVKSFDELK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P VIKP+   S  G  + K  + +      +         LI +     +  
Sbjct: 142 NAAEYIGFPCVIKPVMSSSGHGQSIAKSAKELEKSWEIAKEARGDASELIVEEFIKFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P K+     K+ + +A      +
Sbjct: 202 ITLLTVRNERQTIFCAPIGHI-----QKDGDYIFSWQPMKMSDKAIKKSEEIAKKITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           G RGI   +        +V++ E++ +P      +   +
Sbjct: 257 GGRGIFGVELFV--KGDEVYFSEVSPRP--HDTGMVTMI 291


>gi|321314854|ref|YP_004207141.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
 gi|320021128|gb|ADV96114.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis BSn5]
          Length = 1030

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS        VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                              I
Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP       + + ++  A    + +  +GI
Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866


>gi|253580995|ref|ZP_04858256.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847658|gb|EES75627.1| D-alanine-D-alanine ligase [Ruminococcus sp. 5_1_39BFAA]
          Length = 331

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 106/291 (36%), Gaps = 17/291 (5%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--VQAILELLEIP 78
              ++L+    KV+  +   +    +   + D+ F +  GN   + +  V  I E   I 
Sbjct: 36  QIYNSLQRISPKVTHYNDLPTFIDNIYKHRNDIVFTIYGGNSSRNRMALVPGICESYNIK 95

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---RFTMDSQHLISPPYVIKPLKG 135
           Y  + +    +  DK  SK++    G+ V  S+ +N        + HL+  P VIKPL  
Sbjct: 96  YVGADVYNRIICQDKNISKELAKKAGILVPDSVTINSLDNLNTFNLHLLKYPVVIKPLME 155

Query: 136 GSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIELTCGVMG--------DA 185
           GSS+GI      Q+      +       +   +++EQ++ G E+   ++G        + 
Sbjct: 156 GSSIGITKNSLCQNANNIKEKIEKLYKTYNQPIMVEQFIPGKEIVTCLVGSSKNIRLAEM 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                E      +   Y  +    N  +     I  +I   +         + G     R
Sbjct: 216 VEVCVEQDNTYFNDKLYTGEIKHQNKVNTYHRIITSEIDGSIMNTIKQVFTSFGKMDYMR 275

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            D      + K + +E      ++    F ++  Y   ++  L+  ++  +
Sbjct: 276 IDGKL--YNNKFYMIEFTPDASLSAHCSFKDIYEYQNKTYDNLMEDIINSS 324


>gi|255767255|ref|NP_389006.3| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|254763438|sp|P18185|CARY_BACSU RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|225184882|emb|CAB12965.3| arginine-specific carbamoyl-phosphate synthetase (large subunit)
           [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1030

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS        VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                              I
Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP       + + ++  A    + +  +GI
Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866


>gi|221308965|ref|ZP_03590812.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221313289|ref|ZP_03595094.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221318213|ref|ZP_03599507.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221322487|ref|ZP_03603781.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. subtilis str. SMY]
          Length = 1030

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS        VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                              I
Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP       + + ++  A    + +  +GI
Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866


>gi|408119|emb|CAA81548.1| carbamoylphosphate synthetase subunit B [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 1027

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKERPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS        VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELKQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNEADALHFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 86/294 (29%), Gaps = 37/294 (12%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVREQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                              I
Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP       + + ++  A    + +  +GI
Sbjct: 763 GEEVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G         ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPRA---TRLLAGAS 863


>gi|160944594|ref|ZP_02091821.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii
           M21/2]
 gi|158443778|gb|EDP20782.1| hypothetical protein FAEPRAM212_02107 [Faecalibacterium prausnitzii
           M21/2]
 gi|295104397|emb|CBL01941.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium
           prausnitzii SL3/3]
          Length = 1083

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +   +         D D              V  +L   KPD    
Sbjct: 29  SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++      L+   I            + D+   +         +     
Sbjct: 89  NLGGQMGLNLSMELARSGYLDRTGIRLLACKPETIDRAEDRELFKETMEKLHQPIIPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P +++P       G  + +  + +          +   Q+L+E+
Sbjct: 149 VETLQDALDCADRIGYPVIVRPAFTMGGTGGGICETREKLIEIGTNGLRLSPIHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                 + Y+ ++  
Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A      +G  G     F   P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 84/285 (29%), Gaps = 31/285 (10%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G +   +         D D             SV  ++A  KPD       G    
Sbjct: 591 LKKNGCEAILVNNNPETVSTDFDTGDRLYFDPLNPESVDNIIATEKPDACVVQFGGQTAI 650

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     L I  T +  +  A   ++        +       ++      + +   I
Sbjct: 651 KLAKHMDEIGLPILGTPADAIDEAEDRERFDELLERCNIPRAPGRTVFNLDEALAAAEEI 710

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
             P +++P        +IV      I   + + +   +    +L+++Y+ G E     + 
Sbjct: 711 GLPVLMRPSYVLGGQNMIVAYNKADIIEYMGVITEHVDMDHPVLLDKYIMGTECEVDAIC 770

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    + + +       +S  +        +  D    +        + +   G+
Sbjct: 771 DGENFLIPGIMEQVERTG---VHSGDSICVYPAQHLTQDEIDTMVDYTGRFARELHVTGL 827

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +       +V+ +E+N +   T     P ++   G    ++
Sbjct: 828 VNVQYAVSH--GRVYVIEVNPRSSRT----VPYISKVTGVPMVDM 866


>gi|323691569|ref|ZP_08105833.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum
           WAL-14673]
 gi|323504362|gb|EGB20160.1| carbamoyl-phosphate synthase large subunit [Clostridium symbiosum
           WAL-14673]
          Length = 1087

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 98/293 (33%), Gaps = 32/293 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L+ AG++V  ++ +                       V  ++   KP  A     G
Sbjct: 565 CVWSLKRAGYEVVIVNNNPETVSTDFNVADRLYFEPLTPEDVMDIIRVEKPAGAVVAFGG 624

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                     +   + +  T +  +  A    +  S     +   P   ++      + +
Sbjct: 625 QTAIRLTKCLVENGVPVLGTPAESIDMAEDRGRFNSLLKKLNMKQPSGDTVYTEDEAIAT 684

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P        +I+  +D  I   +         + +LI++Y+ G EL   
Sbjct: 685 ANRLGYPVLVRPSYVLGGQNMIIAYQDADIHEYMKIILEHKIENAILIDKYLMGTELEVD 744

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  V PA +  +     +   +     ++G
Sbjct: 745 AICDGEDVLI----PGIMEHIERAGVHSGDSIAVYPAFMLTESQKDRIVDYSIRLALSLG 800

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +G+    ++    +  ++ +E+N +   T     P ++   G    +L   +
Sbjct: 801 TKGLINIQYVLHEDT--IYIIEVNPRSSRT----VPYISKVTGVLMVDLATRI 847



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       V  ++   KPD   + 
Sbjct: 20  GTQACRALKEEGLEVVLVNSNPATIMTDSAIADQVYIEPLTLEVVKRIIDKEKPDSILST 79

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    ++      LE   +    +       + D+   K  +   G PV PS  +
Sbjct: 80  LGGQTGLTLSMELAKEGFLESRGVTLLGASPETIDKAEDRQCFKDTMEEIGEPVIPSEVV 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M     I  P +++P       G  + K  + +          +   Q+L+E+ 
Sbjct: 140 TTVDAAMAFAEKIGFPVIVRPAFTLGGTGGGIAKTRRELDEIATAGIRLSPIHQILVEKC 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+          +F      ++  +        +    Y+ ++  A
Sbjct: 200 IAGWKEIEFEVMRDSVGNEITVCSMENFDP-VGIHTGDSIVIAPAVTLADKEYQMLRSAA 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+G  G     F  +P S +   +E+N  P ++  S     +   GY    +   
Sbjct: 259 LNIIQAMGIEGGCNCQFALNPESFEYAVIEVN--PRVSRSS--ALASKATGYPIARVATK 314

Query: 292 M 292
           +
Sbjct: 315 I 315


>gi|238019470|ref|ZP_04599896.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748]
 gi|237864169|gb|EEP65459.1| hypothetical protein VEIDISOL_01339 [Veillonella dispar ATCC 17748]
          Length = 1148

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 77/239 (32%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEEFARRCGEEGIIFIGPHVEHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +P+ P     +       +  +    P +IK + GG   G+  + + + + 
Sbjct: 122 ARAQAKLADIPMIPGSDGALRDFEQLEEFANTHGFPLMIKAVNGGGGRGMREVHRKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            K 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP     +  K V   A    + +G       +FL        +++E+N +
Sbjct: 242 VEMAPAFALPL----ETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295


>gi|159045179|ref|YP_001533973.1| carbamoyl phosphate synthase large subunit [Dinoroseobacter shibae
           DFL 12]
 gi|157912939|gb|ABV94372.1| carbamoyl-phosphate synthase large chain [Dinoroseobacter shibae
           DFL 12]
          Length = 1105

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L    +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLAKYGVEMIGAKREAIEMAEDRKLFREAMDRLGIENPRATI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +I+P       G  V                 +  +Q+LI++
Sbjct: 149 ATTMDECMAALDDIGLPAIIRPAFTLGGTGGGVAYNRDDYEHFCKSGLDASPVNQILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNGS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 106/316 (33%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   +         D D S 
Sbjct: 572 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDYDTSD 624

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 625 RLYFEPLTFEHVMEILRAEQENGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 684

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 685 LAEDRERFQALVNDLGLKQPHNAIASTDAEAFAAAGDIGFPLVIRPSYVLGGRAMEIVRD 744

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 745 MGQLERYIAEAVVVSGDSPVLLDSYLAGAVELDVDALCDGENVHVAGIMQHIEEAG---V 801

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+   ++       +A+  +G+    F       +++ +E+N +
Sbjct: 802 HSGDSACSLPPYSLSDDVLARIRVQTEALARALRVKGLMNVQFAI--KDDEIYLIEVNPR 859

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 860 ASRT----VPFVAKAT 871


>gi|330898476|gb|EGH29895.1| Urea amidolyase-related protein [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 698

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
            H I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 AHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 207 HLEVQVFGDCQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCI----AAVKLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 312 MVQLAAGD 319


>gi|303261595|ref|ZP_07347542.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|303267153|ref|ZP_07353021.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS457]
 gi|303268446|ref|ZP_07354241.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS458]
 gi|302637175|gb|EFL67663.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS292]
 gi|302642052|gb|EFL72404.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS458]
 gi|302643314|gb|EFL73593.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS457]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|295677603|ref|YP_003606127.1| urea carboxylase [Burkholderia sp. CCGE1002]
 gi|295437446|gb|ADG16616.1| urea carboxylase [Burkholderia sp. CCGE1002]
          Length = 1199

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 60/182 (32%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V      +             +      +++       
Sbjct: 147 AQTIGYPVMLKSTAGGGGIGMRVCWNADELGAHFDAVRRLGENNFSDAGVFLEKYIERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +            ++  +       PA    D +   +   A    +A+ 
Sbjct: 207 HLEVQVFGDGKGDALALGVRDCSVQRRNQKVLEETPAPCLPDGVQAALCEAAVRLAKAVD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSAAERFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|172064806|ref|YP_001815518.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6]
 gi|171997048|gb|ACB67965.1| pyruvate carboxylase [Burkholderia ambifaria MC40-6]
          Length = 1173

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V    K D      +G   E+      +    I +            +K+ 
Sbjct: 69  LDID-DILRVARQAKVDAIHPG-YGFLSENPEFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++  Q + 
Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDFDACKVLAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 186

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            + 
Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTVQ----RR 242

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +           +  +    +   A    +A+G       +FL D  + + +++E+N +
Sbjct: 243 NQKVVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 301


>gi|168489101|ref|ZP_02713300.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP195]
 gi|183572511|gb|EDT93039.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae SP195]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|168484509|ref|ZP_02709461.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|172042246|gb|EDT50292.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1873-00]
 gi|332201739|gb|EGJ15809.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA47368]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|148994086|ref|ZP_01823426.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP9-BS68]
 gi|147927439|gb|EDK78468.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP9-BS68]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP+S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPISFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|149012332|ref|ZP_01833401.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|168493195|ref|ZP_02717338.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|182684209|ref|YP_001835956.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae CGSP14]
 gi|221231963|ref|YP_002511115.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           ATCC 700669]
 gi|237649974|ref|ZP_04524226.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237821120|ref|ZP_04596965.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|303254479|ref|ZP_07340584.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS455]
 gi|303258912|ref|ZP_07344891.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|303264265|ref|ZP_07350185.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS397]
 gi|226700939|sp|B2IQ67|CARB_STRPS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813605|sp|B8ZJT9|CARB_STRPJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|147763658|gb|EDK70593.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP19-BS75]
 gi|182629543|gb|ACB90491.1| carbamoyl-phosphate synthase large subunit [Streptococcus
           pneumoniae CGSP14]
 gi|183576639|gb|EDT97167.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC3059-06]
 gi|220674423|emb|CAR68975.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           ATCC 700669]
 gi|302598565|gb|EFL65606.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS455]
 gi|302639855|gb|EFL70311.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP-BS293]
 gi|302646077|gb|EFL76304.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae BS397]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|15903196|ref|NP_358746.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae R6]
 gi|60389779|sp|Q8CWR0|CARB_STRR6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|15458783|gb|AAK99956.1| Carbamoylphosphate synthase (ammonia), heavy subunit [Streptococcus
           pneumoniae R6]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACFSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|15901135|ref|NP_345739.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111658502|ref|ZP_01409168.1| hypothetical protein SpneT_02000329 [Streptococcus pneumoniae
           TIGR4]
 gi|116516501|ref|YP_816600.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae D39]
 gi|148998914|ref|ZP_01826349.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|225860894|ref|YP_002742403.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298230795|ref|ZP_06964476.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254285|ref|ZP_06977871.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502728|ref|YP_003724668.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|307067923|ref|YP_003876889.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae
           AP200]
 gi|22095521|sp|Q97QE4|CARB_STRPN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|122278514|sp|Q04K48|CARB_STRP2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|254813664|sp|C1CR31|CARB_STRZT RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|14972759|gb|AAK75379.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae TIGR4]
 gi|116077077|gb|ABJ54797.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae D39]
 gi|147755224|gb|EDK62276.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP11-BS70]
 gi|225726462|gb|ACO22313.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298238323|gb|ADI69454.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|306409460|gb|ADM84887.1| carbamoylphosphate synthase large subunit [Streptococcus pneumoniae
           AP200]
 gi|327389510|gb|EGE87855.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA04375]
 gi|332073614|gb|EGI84093.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA17570]
 gi|332200720|gb|EGJ14792.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae GA41317]
          Length = 1058

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|210635500|ref|ZP_03298581.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279]
 gi|210158355|gb|EEA89326.1| hypothetical protein COLSTE_02520 [Collinsella stercoris DSM 13279]
          Length = 420

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 49/294 (16%), Positives = 94/294 (31%), Gaps = 31/294 (10%)

Query: 16  LSSG--KACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLA----FNVLHGNFGEDGLV 68
           L+S   K+  SA  D  F+V   ID    +   L  L  +L        L G        
Sbjct: 44  LASADIKSVRSAFCD--FRVISGIDQPEVLLPELERLGDELIAQGKIPFLVGCGDHYARQ 101

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----- 123
            +  +       ++  L   L  D  + ++    C     P           +       
Sbjct: 102 VSEHKQQIEERWYTPYLDFELLDDITQKERFYQICEEIGIPYPKTVFLDCGDKTAQVDDG 161

Query: 124 -ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             + P + KP                + +I+  + +     Q    ++   L++++++ G
Sbjct: 162 GFTYPVIAKPSNSAAWHYAEFPGQKKVYLIRSREELEALYRQLQDTSYDKLLIVQEFIPG 221

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++            P        +      +    PA I  +   +V   A   
Sbjct: 222 DDTQIRILSTYVDAA---CDPVFMVGGRVVLEDHSPTAIGNPAVIVSEQLDQVSDDALRF 278

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            + +G RG++  D  FD       + EIN +PG    S+F   A   G +F ++
Sbjct: 279 MRHVGYRGMANFDVKFDERDGTYKFFEINTRPG--RSSMFVHQA---GVNFAQV 327


>gi|326387387|ref|ZP_08208996.1| carbamoyl phosphate synthase large subunit [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326208043|gb|EGD58851.1| carbamoyl phosphate synthase large subunit [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 1104

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIKALKEEGYRIVLVNSNPATIMTDPEMADATYVEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    +   A   + D+ + +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALFRDGTLDKFGVTMIGANAEAIDKAEDRQKFRDAMDKIGLESARSGV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P       G  +          +      +   ++LIE+
Sbjct: 149 AHTVEEALAVLEHTGLPSIIRPSFTLGGTGGGIAYNKDEFIRIVRGGLEASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 62/173 (35%), Gaps = 10/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +I+P        + ++     +   +  +   +    +LI+QY  D +E   
Sbjct: 738 AARIGYPVLIRPSYVLGGRAMEIVDSQAQLDDYIATAVKVSGESPVLIDQYLRDAVECDV 797

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +  V    +   +           ++  + P  +P +I  E++R A L  + + 
Sbjct: 798 DALSDGTDVVIAGVLQHIEEAGIHSG---DSACTLPPYSLPPEIIAEMERQAVLLAKGLN 854

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F        V+ +E+N +   T     P +A   G    +    +
Sbjct: 855 VRGLMNIQFAV--KDGNVYLIEVNPRASRT----VPFVAKAIGQPIAKYAARI 901


>gi|325523057|gb|EGD01470.1| pyruvate carboxylase [Burkholderia sp. TJI49]
          Length = 1172

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V    + D      +G   E+      +    I +            +K+ 
Sbjct: 69  LDID-DILRVARQARVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++  Q + 
Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDLDACKALAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 186

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            K 
Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDMHGTVVHLHERDCTVQRRNQKV 246

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L       + +     A    +A+G       +FL D  + + +++E+N +
Sbjct: 247 VERAPAPYLDRDGRHALCE----AALRLMRAVGYTHAGTVEFLMDADTNQFYFIEVNPR 301


>gi|302336069|ref|YP_003801276.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084]
 gi|301319909|gb|ADK68396.1| ATP-grasp protein-like protein [Olsenella uli DSM 7084]
          Length = 422

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 60/173 (34%), Gaps = 16/173 (9%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIK--------KDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            S P V KP    +     +              +        + ++   L++++ + G 
Sbjct: 164 FSYPLVAKPSNSAAYHYAEIPDKKKVFFVQDRSELEGIFRSLQASSYDKSLIVQELIPGE 223

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +         S+     + P        +      +    PA I  +  ++V   A    
Sbjct: 224 DSQ---ERILSIYTDANSDPVFMVGGRVVLQDHAPTAIGNPAVIIPETNRKVLEDACRFM 280

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           + +G  G++  D  +D       + EIN +PG    S+FP +A   G +F ++
Sbjct: 281 RRVGYHGMANFDVKYDARDDSFKFFEINTRPG--RSSLFPYLA---GVNFAKV 328


>gi|325105839|ref|YP_004275493.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM
           12145]
 gi|324974687|gb|ADY53671.1| carbamoyl-phosphate synthase, large subunit [Pedobacter saltans DSM
           12145]
          Length = 937

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   K D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDNVIADHVYLLPLTVDSIEQILQERKIDAVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G       ++   + I     +      I A   + ++   +Q++   GV V PS  
Sbjct: 89  TMGGQTALNLAKEADERGIWTKYGVRIIGVDIAAIEKTENREEFRQLMVDIGVGVAPSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P       G   +   +     L +  + +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGFPLVIRPSYTLGGSGGGFVHSKEDFDAALTRGLTASPTHEVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +F    +      +             +   + 
Sbjct: 209 AVLGWKEFELELLRDSNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRTYQEMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P +  +  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPANDDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 82/259 (31%), Gaps = 11/259 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+     L G        +     ++I  T    + 
Sbjct: 610 DKLYFEPIFW---EHVREIIELEKPEGVIVQLGGQTALKMAEKLHERGIKIIGTSFDNMD 666

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +        +   P           +   + +  P +++P       G+ ++  
Sbjct: 667 IAEDRGRFSDLLRDLNIPYPRYGVAESAEEALKVANEVGYPVLVRPSYVLGGQGMSIVIN 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   +++      G+++LI+ ++D              +   I             +
Sbjct: 727 DEDLEKAVVKLLGDLPGNRVLIDHFLD-RAEEAESDSIFDGEDIHIIGLMEHIEP-AGIH 784

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +  ++  +++       +A+  RG+    F     +  V+ +E N + 
Sbjct: 785 SGDSSAVLPPYTLSANVISKMEEYTEKLARALDIRGLMNIQFAI--KNEDVYVIEANPRA 842

Query: 267 GMTPVSIFPEMAAYAGYSF 285
             T     P +A      +
Sbjct: 843 SRT----VPFIAKAYDVPY 857


>gi|300855697|ref|YP_003780681.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
 gi|300435812|gb|ADK15579.1| carbamoyl-phosphate synthase large chain [Clostridium ljungdahlii
           DSM 13528]
          Length = 1068

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G +   ++ +                      S+  ++   KPD    
Sbjct: 29  SGTQACEAIKKEGIQTVLVNSNPATIMTDKNIADKTYIEPLTVESLEAIIGREKPDGVLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G    +  ++       +   +        +   + D+   ++        + V   
Sbjct: 89  GFGGQTALNLAMELNEIGVFKKYNVELLGIKTESIKNAEDRESFKNLMNEIDEPIAVSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                      + +S P +I+P       G  +    +            +  +Q+L+EQ
Sbjct: 149 ATNLEECKKFLNKVSLPIIIRPAYTLGGTGGGIASTYEEYMEICENGLEESPINQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +                 + Y+ ++R 
Sbjct: 209 SLAGWKELEYEIMRDKKDNCMVVCNMENLDPVGIHTGDSIVVAPSQTLNDRE-YQMLRRS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G     F  DP S +   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 AIKIIRTLKIEGGCNIQFALDPNSNRYMVIEVN--PRVSRSS--ALASKAAGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 95/285 (33%), Gaps = 30/285 (10%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I           D+             V  V+   K D       G   
Sbjct: 580 AIKKAGYEAIIINNNPETVSTDFDISDKLYFEPLYIDDVMNVINEEKVDGVIVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + +  T    +  A   +K R          PV  S+       +    
Sbjct: 640 LNLSKKLNDRGVNLLGTSFESIDLAEDREKFRVLLKELDINSPVGGSVTSLEEADNLVAE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+   + +   L  + + +    +L+++Y+ G E+    + 
Sbjct: 700 IGYPVIVRPSYVIGGRAMKVVYNYEELCKYLKDAVNLSKEHPVLVDKYIVGKEIEVDAIS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +      + +P ++ K+++       + +  +G+
Sbjct: 760 DGEDLIIPGIMEHIEKTG---VHSGDSIAVYPASDLPENVLKKIEDYTVKIAKKLNVKGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               + FD    KV+ +E+N +   T     P ++        E+
Sbjct: 817 LNVQYAFD--GDKVYVIEVNPRASRT----VPILSKVTNIPMVEI 855


>gi|222099085|ref|YP_002533653.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana
           DSM 4359]
 gi|254813665|sp|B9KB91|CARB_THENN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|221571475|gb|ACM22287.1| Carbamoyl-phosphate synthase large chain [Thermotoga neapolitana
           DSM 4359]
          Length = 1099

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 104/299 (34%), Gaps = 33/299 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL+ AG++V  +         D + S            +  ++   +PD    
Sbjct: 29  SGTQALKALKSAGYEVIIVNSNSATIMTDPEFSDAVYIEPLTVEFLEEIIKKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +  V+     IL+   +    + + +   + D+   K+ +   G+ V  S  
Sbjct: 89  TLGGQTALNLAVELAESGILDRYGVQLIGAKLESIKKAEDRELFKKTMEEAGLEVLRSRL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++      P +I+P       G  V   ++ +   + +    +    +LIE+
Sbjct: 149 VNNLTDALETAREFGYPVIIRPSFTLGGTGGGVAFNEEELREIVTKGLIESPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +         +     +     +      +         ++ Y+ ++  
Sbjct: 209 SVIGWKEYELEVVRDGAGNFIVVCSIENLDPMGIHTGDSITVAPSQTLTDVE-YQRMRDA 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+    AIG   G S   F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 268 AYKVIDAIGIETGGSNIQFAVDPKTGRMVVIEMN--PRVSRSS--ALASKATGYPIAKI 322



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 93/290 (32%), Gaps = 31/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++   +         D D              V  ++ + KP        G   
Sbjct: 575 AFQEEGYEAIMVNSNPETVSTDYDTSDRLYFEPLTVEDVLEIVRNEKPKGVVVAFGGQTP 634

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  + E + I  T    +  A   +K            P   +       +     
Sbjct: 635 LRIARHLVEEGVNIIGTSFESIEIAEDREKFAKLLKRIGLRCPPFGTASSVEEALKVAED 694

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++   + +   + +++  + G  +LI+++++       +  
Sbjct: 695 LGYPVLVRPSYVLGGRAMAIVDTPEELERYVREAAIVSPGYPILIDKFLED---AIELDV 751

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D   D   + +        E    S +S  VLP     + + +E+++      +A+   G
Sbjct: 752 DVVSDGKYVWIAGLMEQIEEAGVHSGDSACVLPPVSLSEKLVEEIEKTVHRLVKALKIVG 811

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           I+           +++ +E N +   T     P ++   G    ++   +
Sbjct: 812 IANIQMAV--KDEEIYIIEANPRASRT----VPFVSKAIGIPVAKIAAKI 855


>gi|197303253|ref|ZP_03168294.1| hypothetical protein RUMLAC_01976 [Ruminococcus lactaris ATCC
           29176]
 gi|197297679|gb|EDY32238.1| hypothetical protein RUMLAC_01976 [Ruminococcus lactaris ATCC
           29176]
          Length = 1067

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLIKKEKPDSVLPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G  G +    ++    L E      G  +  +   + R +   +   +    +    +
Sbjct: 90  LGGQAGLNLAMELEEAGFLKENGVRLIGTTSETIKKAEDRLEFKATMEKIGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +      +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGLAFANEIGYPVVLRPAYTLGGSGGGIAHDPHQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYNLDEIQNAITKK 341



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  +  A   +             P   ++       +  + 
Sbjct: 641 IKLTEALMKMGVPILGTSAENVDKAEDRELFDEILEECQIPRPTGGTVFTAEEAKEVANR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   D    ++        +++   G
Sbjct: 761 DGDDILI----PGIMEHIERAGIHSGDSISVYPAQSLTDGAKAKIAEYTRRLAKSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 MINIQFIVCGEED-VYVIEVNPRSSRT----VPYISKVTGIPIVPLATQVI 862


>gi|307700764|ref|ZP_07637789.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           FB024-16]
 gi|307613759|gb|EFN93003.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           FB024-16]
          Length = 1105

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L   G KV  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIKVVLVNSNPATIMTDPEVADRTYIEPITTEVLEAIIAAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +         ILE   +    +   A     D+   K+VV  C   V     
Sbjct: 89  TLGGQTALNAAIQLHEAGILERYGVELIGANAAAINAGEDREEFKRVVERCGAEVARSWI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++ + +  P V++P      LG  +      +        S +   ++L+E+
Sbjct: 149 AHSLDDCFEAANQLGYPLVVRPSFTMGGLGSGIAYNAVDLERIAGAGLSDSLNTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++       
Sbjct: 209 AIIGWKEYELELMRDQADNVVVVCSIENIDPVGVHTGDSVTVAPALTLTDRELQNLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPETGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|227875412|ref|ZP_03993553.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mobiluncus
           mulieris ATCC 35243]
 gi|269977334|ref|ZP_06184307.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           28-1]
 gi|306818725|ref|ZP_07452447.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|227843966|gb|EEJ54134.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Mobiluncus
           mulieris ATCC 35243]
 gi|269934637|gb|EEZ91198.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           28-1]
 gi|304648411|gb|EFM45714.1| carbamoyl-phosphate synthase, large subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 1105

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L   G KV  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIKVVLVNSNPATIMTDPEVADRTYIEPITTEVLEAIIAAERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +         ILE   +    +   A     D+   K+VV  C   V     
Sbjct: 89  TLGGQTALNAAIQLHEAGILERYGVELIGANAAAINAGEDREEFKRVVERCGAEVARSWI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++ + +  P V++P      LG  +      +        S +   ++L+E+
Sbjct: 149 AHSLDDCFEAANQLGYPLVVRPSFTMGGLGSGIAYNAVDLERIAGAGLSDSLNTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++       
Sbjct: 209 AIIGWKEYELELMRDQADNVVVVCSIENIDPVGVHTGDSVTVAPALTLTDRELQNLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPETGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|238619933|ref|YP_002914759.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           M.16.4]
 gi|259585686|sp|C4KHM7|CARB_SULIK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|238381003|gb|ACR42091.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           M.16.4]
          Length = 1051

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    AV         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|227827761|ref|YP_002829541.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           M.14.25]
 gi|229585032|ref|YP_002843534.1| carbamoyl phosphate synthase large subunit [Sulfolobus islandicus
           M.16.27]
 gi|259585685|sp|C3N664|CARB_SULIA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|259585688|sp|C3MW21|CARB_SULIM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|227459557|gb|ACP38243.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           M.14.25]
 gi|228020082|gb|ACP55489.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           M.16.27]
          Length = 1051

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 100/297 (33%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++ +  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEEDLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    AV         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|184155678|ref|YP_001844018.1| carbamoyl phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
 gi|226700931|sp|B2GD06|CARB_LACF3 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183227022|dbj|BAG27538.1| carbamoylphosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
          Length = 1059

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60
           C  AL+  G++   I+        D SV   L      L    NV              G
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L +A   +         +   P+  +    +  +D+
Sbjct: 637 QTAINLASGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   L Q++       +L++ Y++G E    
Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +   +  +++        A+ C
Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++   ++ + +                     +  +L    PD+   
Sbjct: 29  SGTQACLALKEEGYETVLVNSNPATIMTDKGIADHVYIEPLTVAALTRILRQEAPDVLLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P +++P       G  +   +  +          +   Q LIE+
Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+   G        DP S     +E+N  P ++  S     +   GY   +L  
Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|148555411|ref|YP_001262993.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
 gi|148500601|gb|ABQ68855.1| phosphoribosylglycinamide synthetase [Sphingomonas wittichii RW1]
          Length = 344

 Score = 59.1 bits (141), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 88/250 (35%), Gaps = 8/250 (3%)

Query: 52  DLAFNVLH--GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           D  F +L+  G    + L+  + E   IPY  +  +   LS DK  +K+V  + G+P  P
Sbjct: 74  DFVFPLLNRGGFLNSEMLLPLLCERRGIPYLGASPILRGLSDDKHLAKRVAVARGLPTAP 133

Query: 110 SILVNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG---D 164
             L  R       L  P    V+KP    +S GI      + +   + +     H    +
Sbjct: 134 WALFRRGAPIDLSLCPPAARHVVKPNASSASWGISAAHDLEDVRAAVARLHKEGHDVIVE 193

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
             +    ++   +T                      +Y  K + ++        +  D +
Sbjct: 194 PFIPGHDIEVSVITLDGEPFILPVQIVEQDDPGYLRTYLEKRNLIDDQAYAIRPLDDDRL 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
             E  R A    +        R +F  +  +  + ++E+N+   +         AA  G+
Sbjct: 254 RIEATRQAIEMMKEFLPFDYGRFEFRLNAATGALSFMEVNLNCNLWSRKTIAMAAAQIGW 313

Query: 284 SFRELLLWMV 293
           S  EL+  ++
Sbjct: 314 SHAELIETIL 323


>gi|182676800|ref|YP_001830908.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182636647|gb|ACB97419.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 525

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 67/212 (31%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     IL    I +         +  DK+ +K+   S G+P  P     +   
Sbjct: 82  YGFLSENAHFAEILAAHNIAFIGPKPEHIRIMGDKIEAKRTAISLGIPCVPGSSGALNHA 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +D    I  P +IK   GG   G+ V          +  +SS           Y++ 
Sbjct: 142 EEALDIAEGIGFPVLIKAASGGGGRGMKVAHSRDEFASAVATASSEAKAAFGDGSVYLEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                  +    L                L+          P+ +  +  +E        
Sbjct: 202 YLENPRHIEIQVLGDGRGNAVHLGERDCSLQRRHQKVWEESPSPVLDETQREEICEICAV 261

Query: 235 -HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +G  G+   +FL+     K +++E+N +
Sbjct: 262 AMRKLGYLGVGTIEFLY--KDGKFYFIEMNTR 291


>gi|260663070|ref|ZP_05863963.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260552691|gb|EEX25691.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 1059

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60
           C  AL+  G++   I+        D SV   L      L    NV              G
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L +A   +         +   P+  +    +  +D+
Sbjct: 637 QTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   L Q++       +L++ Y++G E    
Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +   +  +++        A+ C
Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL++ G++   ++        D+ +                +L    PD    
Sbjct: 29  SGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRILRQEAPDALLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P +++P       G  +   +  +          +   Q LIE+
Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+   G        DP S     +E+N  P ++  S     +   GY   +L  
Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|227515719|ref|ZP_03945768.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
 gi|227085919|gb|EEI21231.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
          Length = 1059

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/293 (14%), Positives = 94/293 (32%), Gaps = 30/293 (10%)

Query: 22  CASALEDAGFKVSQID-------VDRSVGLVLAHLKPDL--AFNVLH------------G 60
           C  AL+  G++   I+        D SV   L      L    NV              G
Sbjct: 577 CVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    L +A   +         +   P+  +    +  +D+
Sbjct: 637 QTAINLAAGLEANGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDA 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   L Q++       +L++ Y++G E    
Sbjct: 697 AKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +     P  +   +  +++        A+ C
Sbjct: 757 AICDGERVLLPGIMEHIEHAG---VHSGDSMAVYPPQSLSGAVKVQIEEATKKLAVALKC 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            GI    F+      + + LE+N +   T     P ++   G    +L   ++
Sbjct: 814 VGIMNIQFII--HDGQAYVLEVNPRASRT----VPFLSKVTGIEMAQLATKVI 860



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL++ G++   ++        D+ +                +L    PD    
Sbjct: 29  SGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRILRQEAPDALLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +K +         VP   +
Sbjct: 89  TLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P +++P       G  +   +  +          +   Q LIE+
Sbjct: 149 VSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELTEIAKNGLELSPATQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDC 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     A+   G        DP S     +E+N  P ++  S     +   GY   +L  
Sbjct: 268 ALKLISALKIEGGCNVQLALDPNSYDYNVIEVN--PRVSRSS--ALASKATGYPIAKLAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|21245038|ref|NP_644620.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306]
 gi|21110767|gb|AAM39156.1| urea amidolyase [Xanthomonas axonopodis pv. citri str. 306]
          Length = 1215

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+        +                    +++G      
Sbjct: 150 AQHIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIEGFVANAR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+          PA    D     +   A    +A+ 
Sbjct: 210 HVEVQIFGDGKGRVVALGERDCSLQRRHQKVVEETPAPHLPDATRAALLDAAVKLGEAVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D      ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 270 YVSAGTVEFIYDAARDAFYFLEVNTRLQVEHP-ITE--------AVTGL---DLVEWMVR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|311068393|ref|YP_003973316.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
 gi|310868910|gb|ADP32385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           atrophaeus 1942]
          Length = 443

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 33/243 (13%), Positives = 80/243 (32%), Gaps = 8/243 (3%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            +    S +++D+ +       K D      +G   E+ +         + +        
Sbjct: 54  KSRVNESYLNIDK-IIEAAKESKADAIHPG-YGLLSENSIFAERCRKENLTFIGPPPSVI 111

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIV 143
           A    K+ +++ +    +PV P +  ++  + S  L    I  P ++K   GG  +G+ +
Sbjct: 112 AKMGSKIEARKAMEKAHIPVVPGVSESQSDVHSACLAARRIGFPVMLKASAGGGGIGMQL 171

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +  ++ +      +             Y++ +      +    L                
Sbjct: 172 VHSEEELIKAYEGNKKRAADFFGDGSMYIEKVIENARHIEIQILADHFGNAVHLFERDCS 231

Query: 204 LKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++          P   +  D+   +   A  A ++IG       +FL D      ++LE+
Sbjct: 232 VQRRHQKVIEEAPSPFVDDDLRTRIGETAVKAARSIGYTNAGTIEFLVDQDKN-FYFLEM 290

Query: 263 NVQ 265
           N +
Sbjct: 291 NTR 293


>gi|258646722|ref|ZP_05734191.1| pyruvate carboxylase [Dialister invisus DSM 15470]
 gi|260404151|gb|EEW97698.1| pyruvate carboxylase [Dialister invisus DSM 15470]
          Length = 1142

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+  +    E   I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRICKEHHVDAVHPG-YGFLAENAELAKRCEEEGIIFIGPRVEHLIMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +P+ P     +               P +IK + GG   G+  + + + + 
Sbjct: 122 ARIQAEKAQIPMIPGTNGAVESFDEVKAFAEEYGFPVMIKAVNGGGGRGMRNVDRMEDLE 181

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +       ++   +  + +  ++   +   ++GD +  V  +            K 
Sbjct: 182 EAYHRAKSEAKMAFGSDEVYVEKCIMNPKHIEVQILGDEAGHVIHLFERDCSIQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP K+  DI       A    + +        +FL D      +++E+N +
Sbjct: 242 IEMAPAWSLPQKLREDICS----AAVKLMKNVNYLNAGTVEFLVDQDEEHFYFIEVNPR 296


>gi|325982667|ref|YP_004295069.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas sp.
           AL212]
 gi|325532186|gb|ADZ26907.1| carbamoyl-phosphate synthase, large subunit [Nitrosomonas sp.
           AL212]
          Length = 1067

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 92/298 (30%), Gaps = 39/298 (13%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++A  KPD       G   
Sbjct: 582 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPDGVIVQYGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++  A   ++ +          P   ++      + +   
Sbjct: 642 LKLARDLEANGVSIIGTSPDMIDCAEDRERFQKMLQQLGLIQPPNRTVRNPEEALIAAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   + ++   ++   +L++ +     E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHERADLERYMREAVKVSNDSPVLLDHFLTHATEVDVDAI 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D    +    +   +         S +S   LP      +I  E++R      + +   
Sbjct: 762 CDGKTVLIGGIMEHIEQ----AGVHSGDSACSLPTFNLQPEILDELRRQTAEMARMLNVV 817

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           G+    F        V+ LE+N +   T     P ++   G    ++       A C+
Sbjct: 818 GLMNVQFAI--QDDTVYVLEVNPRASRT----VPFISKATGLQLAKI------SARCM 863



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ + +                     +  ++A  +P     
Sbjct: 29  SGVQACKALREEGYRIILVNSNPATIMTDPEMADATYIEPITWNMIEKIIAIERPQALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G        D +   +LE  ++    +   A  ++ D+ + KQ ++  G+    S  
Sbjct: 89  TMGGQTALNCALDLVKHGVLEKYDVELIGASREAIDMAEDREKFKQAMTRIGLGSARSAV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +  Q ++  P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSMEEALQVQAMLGYPVIIRPSFTMGGSGGGIAYNREEFLDICERGLKTSPTKELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVVRDKNDNCIIVCSIENIDPMGVHTGDSITVAPAQTLTDKEYQLMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAINPDNGRMLVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|194335771|ref|YP_002017565.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194308248|gb|ACF42948.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 492

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVVLVNSNPATIMTDIEFADATYIEPITPEYVQKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNIAVSLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEEIGLPIVIRPSFTLGGTGGGFAETKADYYDAIRRGLTESPISEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 CLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +PL+ ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAINPLNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|303240753|ref|ZP_07327266.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
 gi|302591641|gb|EFL61376.1| carbamoyl-phosphate synthase, large subunit [Acetivibrio
           cellulolyticus CD2]
          Length = 1070

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL++   +V  ++ + +                     V  ++   KPD     
Sbjct: 30  GTQACRALKEENIEVILVNSNPATIMTDTNIADKVYIEPLTPEIVKKIIIEEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      LE   +    +      ++ D+   K  +   G P   S  +
Sbjct: 90  LGGQTGLNLAMELAESGFLEEQGVKLLGTATETIKMAEDRQAFKDTMERIGEPCIASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M+   LI  P +++P       G  ++  ++ +          +   Q+LIE+ 
Sbjct: 150 TTIEDAMEFAALIGYPVIVRPAYTLGGSGGGIVYNEEELFEIGSNGLRLSRVTQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  +
Sbjct: 210 ISGWKEVEYEVMRDGKGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLTDKEYQMLRTAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G +G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELGIQGGCNVQFALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 94/289 (32%), Gaps = 32/289 (11%)

Query: 26  LEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ G++               D              V  ++   K D       G    
Sbjct: 584 LKEEGYETIIANNNPETVSTDFDTADRLYFEPLTAEDVENIVETEKVDGVIVQFGGQTAI 643

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
                     ++I  T    + +A   +K  +         P   ++      +++ + +
Sbjct: 644 KLTKALDQMGVKIFGTEPYYIDAAEDREKFDAVLEEIGIPRPEGKTVFTLEEALEAANEL 703

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + D
Sbjct: 704 KYPVLVRPSYVLGGQGMEIAFSDKDVQEFMEIITRVKQEHPILVDKYMMGKEIEVDAICD 763

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  V P+  I   + +++        +A+   G+
Sbjct: 764 GEDILI----PGIMEHLERAGVHSGDSISVYPSLSISDKLKEKIVDFTKKLAKALHVIGL 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +++   + +++ +E+N +   T     P ++   G     +   +
Sbjct: 820 VNIQYVY--YNHELYVIEVNPRSSRT----VPYISKVTGIPMVNIATRI 862


>gi|153953287|ref|YP_001394052.1| carbamoyl phosphate synthase large subunit [Clostridium kluyveri
           DSM 555]
 gi|219853919|ref|YP_002471041.1| hypothetical protein CKR_0576 [Clostridium kluyveri NBRC 12016]
 gi|146346168|gb|EDK32704.1| CarB1 [Clostridium kluyveri DSM 555]
 gi|219567643|dbj|BAH05627.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1068

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +V  ++ +                       +  V+   KPD    
Sbjct: 29  SGTQACESLREEGMEVVLVNSNPATIMTDREVADKVYIEPLTVEFIEKVIKKEKPDSILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +  V+      LE   +    + I A     D+   R      +  V     
Sbjct: 89  GMGGQTALNLTVELYDNKILEKYNVKIIGTSIEAIKKGEDRELFRDTMNKINQPVVESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  + + ++ + + L      +   Q+L+E+
Sbjct: 149 VTDIESGIRFAQKIGYPVIVRPAYTLGGTGGGIAENEEELKIILESGLELSSIGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S           +       ++  +        +    Y+ ++  
Sbjct: 209 SIKGWKEIEYEVMRDSFGNCITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      +   G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINEVEIEGGCNVQLALNPHSFEYVVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 87/281 (30%), Gaps = 33/281 (11%)

Query: 22  CASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHG 60
           C   L   G +   I           D+             V  +L   KP        G
Sbjct: 580 CIKILRKLGIETIIINNNPETVSTDFDISDKLYFEPITEEDVLSILDKEKPYGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + +    T +  +  A   +K        +   P    +      ++ 
Sbjct: 640 ETAIKLAEFLKEKNIVTLGTTADQIDMAEDREKFDVLLEKLNIKRPKGKGVWTIDEGLEE 699

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P       G+ +   ++ +   L  + + +  + +LI++Y+ G E+   
Sbjct: 700 GRKLGFPVLVRPSYVLGGQGMEITYTEKELAYYLSMAFNKDKKNPILIDKYLMGREIEVD 759

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            + D    +     P    +       S +S  + PA+   D  +E            IG
Sbjct: 760 AICDGEDVLI----PGIMEHLERAGVHSGDSITMYPAQNVNDDMREKVLEYTVKLSLGIG 815

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+       ++ +E+N       P ++ VS  P
Sbjct: 816 IKGMINIQFI--EYEGNLYVIEVNPRASRTVPYISKVSNVP 854


>gi|95928751|ref|ZP_01311497.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135096|gb|EAT16749.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfuromonas
           acetoxidans DSM 684]
          Length = 445

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 47/284 (16%), Positives = 92/284 (32%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVD-RSVGLVLAHLK--------PDLAFN----------- 56
                 A ++ G K   +  DVD  ++ + LA            D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSDVDSEALHVKLADQSVCIGPAPSIDSYLNMKAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
               +H   G   E+     I     + +         L  DK+ ++Q V+S GVP+   
Sbjct: 74  DADAIHPGYGFLSENAEFADICNNCGLTFIGPTAENMRLMGDKISARQTVTSAGVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWN 161
               +      +     I  P +IK   GG   G+ ++    S+P           S + 
Sbjct: 134 TKDGVPNVEEAVRIAGEIGYPVIIKATAGGGGRGMKIVHSPASLPNAFAAARSEAQSGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +       +   ++ D    V  +            K        +LP     
Sbjct: 194 NPEVYIEKYCERPRHVEIQILADKHGHVIHLGERDCSIQRRHQKLIEEAPCAILPD---- 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           D+ + +   A  A +A+    +   +FL D  +   +++E+N +
Sbjct: 250 DVRQRMGDCAVAAAKAVNYSSVGTIEFLLDA-NNDFYFMEMNTR 292


>gi|168487443|ref|ZP_02711951.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|225859069|ref|YP_002740579.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae 70585]
 gi|254813604|sp|C1C7Q3|CARB_STRP7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|183569715|gb|EDT90243.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae CDC1087-00]
 gi|225721866|gb|ACO17720.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           pneumoniae 70585]
          Length = 1058

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|115360498|ref|YP_777635.1| pyruvate carboxylase [Burkholderia ambifaria AMMD]
 gi|115285826|gb|ABI91301.1| pyruvate carboxylase [Burkholderia ambifaria AMMD]
          Length = 1169

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 79/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V    K D      +G   E+      +    I +            +K+ 
Sbjct: 65  LDID-DILRVARQAKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 122

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++  Q + 
Sbjct: 123 ARNAAIAAGVPVMPATAPLPDDLDACKVLAAEVGYPLMLKASWGGGGRGMRVLENAQDLE 182

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            + 
Sbjct: 183 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTVQ----RR 238

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +           +  +    +   A    +A+G       +FL D  + + +++E+N +
Sbjct: 239 NQKVVERAPAPYLDRESRHALCESALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 297


>gi|114569693|ref|YP_756373.1| pyruvate carboxylase [Maricaulis maris MCS10]
 gi|114340155|gb|ABI65435.1| pyruvate carboxylase [Maricaulis maris MCS10]
          Length = 1146

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 47/151 (31%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++K   GG   G+ VI++   +                  E Y++ +
Sbjct: 145 DWDTMAEAVGYPLMLKASWGGGGRGMRVIEEAGELHAQAEAGRREAEAAFGNGEVYLEKL 204

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
                 +    L  +   +         ++  +       P   +  D    +   A   
Sbjct: 205 IRKARHIEVQILGDSHGNLVHLYERDCTVQRRNQKVVERAPAPDMGEDTRSAICEAALRL 264

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  G  G    +FL D  + K +++E+N +
Sbjct: 265 VRHAGYCGAGTVEFLLDAETGKFYFIEVNPR 295


>gi|311696040|gb|ADP98913.1| urea amidolyase related protein [marine bacterium HP15]
          Length = 1208

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+        +          +  +      +++       
Sbjct: 152 ADTIGYPVMLKSTAGGGGIGMSRCYGPDDLGKSFESVQRLSQNNFSNSGVFLEKFVEHAR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V          +  +       PA     D+   +   A    ++IG
Sbjct: 212 HVEVQLFGDGQGQVLALGERDCSAQRRNQKVIEEAPAPGLSDDVRSRMHATARQLGKSIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++DP + + ++LE+N +     G+T            G    +L+ WMVE 
Sbjct: 272 YRSAGTVEFIYDPDTTEFYFLEVNTRLQVEHGVTE--------QVYGV---DLVRWMVEL 320


>gi|291277025|ref|YP_003516797.1| carbamoyl-phosphate synthase large chain [Helicobacter mustelae
           12198]
 gi|290964219|emb|CBG40068.1| carbamoyl-phosphate synthase large chain [Helicobacter mustelae
           12198]
          Length = 1086

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 84/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                       +  ++   K D    
Sbjct: 29  SGTQAVKTLKSLGYRVVLINSNPATIMTDPEFADRTYIEPITEEVIYHIIQTEKVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE +E        +         +   +     VP      
Sbjct: 89  TMGGQTALNVAMKMYEKGMLEGIEFLGARPEAIKKGEDRQIFKETMLKIGMDVPKSFYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V    +            +  +++LIE+ +
Sbjct: 149 NEEQALEAAKAIGFPIIIRASFTLAGGGSGVAYNIEEFQALAKAGLEASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDKNDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKEYQRMRDCSFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPQTGRMIVIEMN--PRVSRSS--ALASKATGYPIAKVATLL 324



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/266 (13%), Positives = 85/266 (31%), Gaps = 18/266 (6%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            V   +      V  VL   KPD    ++H        +   +    I    +      +
Sbjct: 612 DVLYFEPIGFEFVRAVLQKEKPDGV--IVHFGGQTPLKLAKEIAKFGIKIIGTSAKVIDI 669

Query: 90  SMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + D+ +    V   G+    +               +  P +++P        + +++  
Sbjct: 670 AEDREKFSAFVKEHGLRQPDNGIAFNKEEAHLIASKLGFPVLVRPSYVLGGRAMRIVENA 729

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           Q +   + ++   +    +LI++++DG IEL    + D         +   +    E   
Sbjct: 730 QDLRAYMEEAVRVSEDSPVLIDKFLDGAIELDVDCICDGEQVYIGGILQHIE----EAGI 785

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFL-AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S   LP     D      +       + +G  G+    +     +  ++ +E+N +
Sbjct: 786 HSGDSASSLPTITIGDAMLLEIKQTTALIAKKLGVVGLMNVQYAI--YNDALYLIEVNPR 843

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    ++   
Sbjct: 844 ASRT----VPFVSKATGMPLAKIATR 865


>gi|6634621|emb|CAB64501.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634624|emb|CAB64503.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634627|emb|CAB64505.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634630|emb|CAB64507.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634633|emb|CAB64509.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634636|emb|CAB64511.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634693|emb|CAB64541.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ EL+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPELIERLVDLA 34


>gi|125623920|ref|YP_001032403.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|146345385|sp|O32771|CARB_LACLM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|124492728|emb|CAL97683.1| carbamoyl-phosphate synthase, large subunit [Lactococcus lactis
           subsp. cremoris MG1363]
 gi|300070694|gb|ADJ60094.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris NZ9000]
          Length = 1064

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     ILE L +    + + A   + D+   +      +  +      
Sbjct: 90  LGGQTGLNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVEEAINIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPNSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 80/267 (29%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P        G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIDLEEPLGVIVQFGGQTAINLAEPLSKAGVKILGTQVEDLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D             P   +       + + + I  P +I+P        + +I  
Sbjct: 663 RAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVLIRPSFVLGGRAMEIINN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVLLPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +   I   +          + C G+    F+      +V+ +E+N + 
Sbjct: 780 SGDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMNIQFVIYEE--QVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        +L   M+
Sbjct: 838 SRT----VPFLSKVTNIPMAQLATQMI 860


>gi|307326799|ref|ZP_07605991.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           violaceusniger Tu 4113]
 gi|306887562|gb|EFN18556.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           violaceusniger Tu 4113]
          Length = 1103

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKSEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       L+   +    + + A     D+ + K+VV +    +     
Sbjct: 89  TLGGQTALNTAISLHQAGTLDEYGVELIGANVEAIHKGEDRDQFKRVVEAVHAKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   I          P V++P       G      +  +     Q  + +   
Sbjct: 149 ARSVICHSMDDILAGVEELGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLALSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 ILRDIGIAVIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAARL 332


>gi|291515967|emb|CBK65177.1| carbamoyl-phosphate synthase large subunit [Alistipes shahii WAL
           8301]
          Length = 1060

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V                   + ++      V  ++   +PD     
Sbjct: 30  GTQACLALKEEGYEVILANSNPATIMTDTHIADKVYMEPLTLEYVAKIIRFERPDAIVPG 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ     IL+  ++    +   +   + D+   +         V      
Sbjct: 90  LGGQTGLNLAVQLAKKGILKECQVEILGTSFESIERAEDRELFKELCESLGEPVLPSHIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +     +     I  P V++P       G      +  +   +  + S +   Q+L+E+ 
Sbjct: 150 MSIEEAVAVAEEIGYPVVLRPAFTLGGTGGGFADDETELREMMRNALSLSPVHQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I +   +       ++  +        +    ++ ++  A
Sbjct: 210 IKG-YKEIEYEVMRDRNDTAICICCMENIDPVGIHTGDSIVVAPSQTLTNKEFQMLRDSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     F  DPLS K + +E+N  P ++  S     +  +GY    +   
Sbjct: 269 LKIIRELKIEGGCNVQFALDPLSFKYYLIEVN--PRVSRSS--ALASKASGYPIARVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 84/289 (29%), Gaps = 29/289 (10%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFGE 64
           +  AG++   I         D   S  L    L  +   NV+H            G    
Sbjct: 578 IRAAGYEAIIINNNPETVSTDYTTSDKLYFEPLTVEDVMNVIHLEKPKAIVVSLGGQTAI 637

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + I  T +  + +A                 P   ++      + +   I
Sbjct: 638 NLAEPLAELGVPIIGTDTQAIKNAEDRGCFERIMEELGIPQPEAEAVTDIESGVRAAARI 697

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + ++  ++ +   L  +   +    +L+++Y+ G EL    + D
Sbjct: 698 GYPVLVRPSYVLGGRAMQIVSNEERLRHYLQTAVEIDVDQPVLVDRYIMGKELEVDAICD 757

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
                    +   +           + +      +      ++          IG  G+ 
Sbjct: 758 GKEVFIPGIMEHVEHTGIHSG---DSISVYPTFSVSQKAKDKIIDYTVKLGLRIGIVGLY 814

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+       V+ +E+N +   T     P ++   G     +   ++
Sbjct: 815 NIQFIVAGEDD-VYVIEVNPRSSRT----VPFLSKSTGVPMAHIATQVI 858


>gi|253579875|ref|ZP_04857143.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251848874|gb|EES76836.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 1071

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + +         +     +
Sbjct: 90  LGGQAGLNLAMELDEKGFLKEHNIRLIGTTAQTIKKAEDRQEFKDTMEKIGEPIAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   ++I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 TTVEDGLAFTNIIGYPVVLRPAYTLGGSGGGIAHNEYELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALKPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 90/291 (30%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   I         D D              V  V+   KPD A     G   
Sbjct: 584 AFAKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENVVNIEKPDGAVVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T +  + +A   +             P   ++        + + 
Sbjct: 644 IKLTEALTKMGVKILGTSAENVDAAEDRELFDEILEKCEIPRPKGQTVFTAEEAKKAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMRIAVSDEDVEEYIGVINQIAQEHPILVDKYLMGKEIEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PAK   +  KE          +A+   G
Sbjct: 764 DGEDILI----PGIMEHIERAGIHSGDSISVYPAKTISEKAKETIAEYTRRLARALHVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 820 MINIQFIVLGDD--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 864


>gi|67537040|ref|XP_662294.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4]
 gi|40741542|gb|EAA60732.1| hypothetical protein AN4690.2 [Aspergillus nidulans FGSC A4]
 gi|259482474|tpe|CBF76992.1| TPA: 3-methylcrotonyl-CoA carboxylase biotin-containig
           subunit3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit (EC 6.4.1.4);(EC 6.4.1.4)
           [Source:UniProtKB/TrEMBL;Acc:Q6T5L7] [Aspergillus
           nidulans FGSC A4]
          Length = 712

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 93/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 50  EIALRVGRTAAQH----GIRVTTLYTDPDSQAQHALSTP-YAFNLGSVSAYLDGDRIIEI 104

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK +SK ++++ GVP
Sbjct: 105 AKAQGCQGIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKHIMTAAGVP 164

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P         +        I  P +IK +KGG   G+ + +  +     L        
Sbjct: 165 CVPGYHGENQDPNFLEAEADKIKYPVLIKAIKGGGGKGMRIARSKEEFQAQLQSAKSEAM 224

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 225 NSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPD 284

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +   G    +F+FD  + + F++E+N +
Sbjct: 285 ATRKDIWAKARSAALA----VRYEGAGTVEFIFDNDTGEFFFMEMNTR 328


>gi|149002646|ref|ZP_01827578.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759257|gb|EDK66250.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 714

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 235 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 294

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 295 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDISQPPGQTATNEEEAALAAR 354

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 355 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 414

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   + + +          + C G
Sbjct: 415 SDGKNVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 471

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 472 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 516


>gi|70998028|ref|XP_753746.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           fumigatus Af293]
 gi|66851382|gb|EAL91708.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus fumigatus Af293]
 gi|159126517|gb|EDP51633.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus fumigatus A1163]
          Length = 756

 Score = 59.1 bits (141), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 95/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+  +      G KV+ +  D       A   P  AFN                
Sbjct: 48  EIALRVGRTASQH----GIKVTTLYTDPDRYAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102

Query: 57  -------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 103 AKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQSKKIMTAAGVP 162

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P    +   ++        I  P +IK +KGG   G+ + +        L        
Sbjct: 163 CVPGYHGSNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIARSKAEFQAQLQSAKSEAM 222

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   +  D   +   +            K    +    LP 
Sbjct: 223 NSFGDDHVLVEKYITTPRHIEVQIFADKYGNCVALGERDCSIQRRHQKILEESPAPHLPD 282

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 283 ATRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|116492119|ref|YP_803854.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
 gi|122266417|sp|Q03HB0|CARB_PEDPA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116102269|gb|ABJ67412.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 1057

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 92/281 (32%), Gaps = 31/281 (11%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
             A+   G++   ++ +                       V  V+   KP+       G 
Sbjct: 578 IQAIRQMGYEAIVVNNNPETVSTDFSMSDKLYFEPLTVEDVMNVIDLEKPEGVIVQFGGQ 637

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              +         ++I  T    +  A   D+       +    P   +       +++ 
Sbjct: 638 TAINLAEPLAERGIKIFGTTVENVNRAEDRDEFNKLIQANGIRQPQGRTATTTSGAIEAA 697

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P        + ++   + +   +  +   +H   +L++QY+ G E    V
Sbjct: 698 ESIGYPVLVRPSYVLGGRAMEIVHAKEELENYMKNAVKVSHNHPVLVDQYLVGKECEVDV 757

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    V    +   +       +S  + T      +   +  E+ +++    Q++ C 
Sbjct: 758 ISDGENVVIPGIMEHIERSG---VHSGDSMTVYPAQTLSQKVQDEIVKVSIKLAQSLECI 814

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+    + + + +E+N       P M+ V+  P  
Sbjct: 815 GLMNIQFVV--HNDEAYVIEVNPRASRTVPIMSKVTDLPMA 853



 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 97/303 (32%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFN 56
           SG     +L++ G++   I           D+   V            +L    PD    
Sbjct: 29  SGTQACLSLKELGYQTVLINSNPATIMTDTDIADKVYIEPLTLQFVSQILRKELPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  ++           +E+  T    +  A   ++ R+     +  VP    
Sbjct: 89  TLGGQQGLNMAMELSEAGILDELGIELLGTKLDAIDQAEDRERFRALMNDLNEPVPDSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + + +  +        + +   Q+LIEQ
Sbjct: 149 ATTVEEAVSFADQSGYPVIVRPAFTMGGTGGGIAQDEAELRKITANGLTLSPVTQVLIEQ 208

Query: 171 YVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + G  E+   VM D+  +   +   ++          S+    V    +     + ++ 
Sbjct: 209 SIAGLKEIEFEVMRDSVDNAIVVCNMENFDPVGIHTGDSIVYAPVQ--TLTDREVQMLRD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    +A+   G        DP   + + +E+N  P ++  S     +   GY   ++ 
Sbjct: 267 ASLSIIRALKIEGGCNVQLALDPAQDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVA 322

Query: 290 LWM 292
             +
Sbjct: 323 AKI 325


>gi|330752600|emb|CBL87545.1| carbamoyl phosphate synthase large subunit [uncultured
           Flavobacteria bacterium]
          Length = 938

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   + +L + G +V+ I+ +                      S+  VL + K D    
Sbjct: 29  SGSQASRSLREEGIEVTLINSNPATIMTDKVVADNIYLKPLEPDSIIEVLKNHKIDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  ++       E   +      I A  ++ ++ + ++++   GV + P   
Sbjct: 89  TMGGQTALNLCIKCDELGIWEDYNVKIIGVDINAIEITENRQKFRKLMDEIGVAMAPQSI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P  I+P       G  ++  +      L +    +   +++I++
Sbjct: 149 AKSFLQGKEIAQKYGFPLCIRPSYTLGGSGASIVYDEAEFDKLLTRGLHASPIHEVMIDK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +             +   + 
Sbjct: 209 AVMGWKEYELELLRDKNDNVTIICSIENLDPMGIHTGDSITVAPAMTLSDTTYQEMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +        G     F   D  +  +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 269 IKMMRSIGDFSGGCNVQFAVSDDANEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 SKL 327



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 85/283 (30%), Gaps = 32/283 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A +++G++   I         D D              +  ++ H KP+     L
Sbjct: 581 HGVLAA-KESGYETIMINCNPETVSTDFDTADKLYFEPVFWEHIYDIILHEKPEGVIVQL 639

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + +  T    L  A            ++   P    +      +
Sbjct: 640 GGQTALKLAEKLDRYGIMVIGTTFQALDLAEDRGSFSKLLKENNIPYPKFGVVKSAEQAI 699

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
           +    +  P +++P        + ++  +  +   ++        +++L++ Y+DG IE 
Sbjct: 700 ELSKDLGFPLLVRPSYVLGGQKMKIVINENELEHHVVDILRDMPDNKILLDHYLDGAIEA 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           +   + P  +   I ++++        A
Sbjct: 760 EADAICDGERVQIIGIMQHIEPAGIHSG---DSYAVLPPFNLGDYIIQQIEEHTHKIALA 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +   G+    F        V+ +E N +   T     P +A  
Sbjct: 817 LKTVGLINIQFAI--KDDVVYIIEANPRASRT----VPFIAKA 853


>gi|225570405|ref|ZP_03779430.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM
           15053]
 gi|225160776|gb|EEG73395.1| hypothetical protein CLOHYLEM_06505 [Clostridium hylemonae DSM
           15053]
          Length = 1065

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 91/291 (31%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDLEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   ++            P   ++       +  + 
Sbjct: 641 IKLTEALMKMGVPILGTSAENVDAAEDRERFDEILEACRIPRPTGGTVYTAEEAKEVANR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   +   K ++       Q++   G
Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSISEKTKKTIEDYTRKLAQSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 LINIQFIVCGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 89/317 (28%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G         +     L        G     +   + R +   +   +    +    +
Sbjct: 90  LGGQAALNLAMELDENGFLRRNNVRLIGTTTETIKKAEDRLEFKTTMEKIGEPCAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 EHVDDGVRFAEKIGYPVVLRPAYTLGGSGGGIAGDREQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPDTFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341


>gi|119479537|ref|XP_001259797.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Neosartorya fischeri NRRL 181]
 gi|119407951|gb|EAW17900.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Neosartorya fischeri NRRL 181]
          Length = 712

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 84/238 (35%), Gaps = 13/238 (5%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + +A  +   A +  +G   E+           + +      A     DK +S
Sbjct: 93  YLDGDRIIEIAKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQS 152

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+++++ GVP  P    +   ++        I  P +IK +KGG   G+ + +       
Sbjct: 153 KKIMTAAGVPCVPGYHGSNQDVNFLEAEADKIRYPVLIKAVKGGGGKGMRIARSKAEFQA 212

Query: 153 DLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            L        +S+     L+ +       +   V  D   +   +            K  
Sbjct: 213 QLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL 272

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +    LP     DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 273 EESPAPHLPDATRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|82702072|ref|YP_411638.1| allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC
           25196]
 gi|82410137|gb|ABB74246.1| Allophanate hydrolase subunit 2 [Nitrosospira multiformis ATCC
           25196]
          Length = 1212

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 79/255 (30%), Gaps = 22/255 (8%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H   G   E            I +             K  ++++     VP+ P   
Sbjct: 76  NAIHPGYGFLSEKAEFAEQCADHGISFIGPTPHQMRAFGLKHTARKLALQNRVPLLPGTG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P ++K   GG  +GI +    + +  +          +     
Sbjct: 136 LLEDLDEALRQAAHIGYPVMLKSTAGGGGIGIRLCWNKEELSANYELVKYLAQNNFKDAG 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++        +        +  V         ++  +       PA   P  + + + 
Sbjct: 196 LFLEKYVEKARHIEVQIFGDGKGGVIALGERDCSMQRRNQKVIEETPAPDLPPRVRQALL 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284
             A    +++  +     +++FD  + + ++LE+N +     G+T            G  
Sbjct: 256 NAAVRLGKSVNYQSAGTVEYIFDASAAEFYFLEVNTRLQVEHGVTE--------EVTGI- 306

Query: 285 FRELLLWMVEDASCL 299
             +L+ WMV  A+  
Sbjct: 307 --DLVEWMVRQAAGD 319


>gi|85703445|ref|ZP_01034549.1| pyruvate carboxylase [Roseovarius sp. 217]
 gi|85672373|gb|EAQ27230.1| pyruvate carboxylase [Roseovarius sp. 217]
          Length = 1146

 Score = 59.1 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 49/153 (32%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        +  P ++K   GG   G+  I+ +  +   + +            E Y++
Sbjct: 144 MKAIRKQAKEVGYPLMLKASWGGGGRGMRPIENESELEDKVREGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            + L    +    L      +         ++  +       PA    +  +E      +
Sbjct: 204 KMILRARHVEVQILGDKHGNMYHLFERDCSVQRRNQKVVERAPAPYLSETQREEICQLGY 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + +        +FL D  + K +++E+N +
Sbjct: 264 KICKHVNYECAGTVEFLMDMDTGKFYFIEVNPR 296


>gi|301058692|ref|ZP_07199693.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium
           NaphS2]
 gi|300447256|gb|EFK11020.1| carbamoyl-phosphate synthase, large subunit [delta proteobacterium
           NaphS2]
          Length = 1078

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF++  I+ +                      +V  ++   +P     
Sbjct: 29  SGTQACKALMEEGFEIVLINSNPATIMTDPGTAHRTYIEPITAEAVSRIIERERPQAILP 88

Query: 57  VLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V+     +      E+      ++  A   ++ R+        VP    
Sbjct: 89  TLGGQTGLNTAVEVAESGILEKLGVEMLGASLPVIQKAEDREQFRNAMKKIGLKVPDNFI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   I  P +I+       +G  V      +          +   ++++E+
Sbjct: 149 ARNMDEARYAAEQIGYPIIIRASYTLGGIGSGVAYNRDEMEEIAKAGLDASMISEVIMER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +          +        
Sbjct: 209 SLLGWKEYELEVMRDFKDNVVIICSIENFDPMGVHTGDSITVAPAQTLSDYEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIIREIGVETGGSNIQFAVHPDTGEMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 30/255 (11%), Positives = 84/255 (32%), Gaps = 10/255 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++    P+       G    +  V      ++I  T    +  A   ++ +    
Sbjct: 629 EDVLHIVEQENPEGIIVQFGGQTPLNLSVPLAETGVKILGTSPDSIDQAEDRERFQVMLK 688

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P     +  R  +     I  P V++P        + ++   + +   +  +  
Sbjct: 689 KLGILQPENGIAVNQRQAIHIADRIGYPVVVRPSFVLGGRAMEIVYDQKDLEYYMETAVQ 748

Query: 160 WNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            + G  +LI++++DG +E+    + D    V    +   +           ++  + P  
Sbjct: 749 VSPGKPVLIDRFLDGAVEIDVDAISDGQTTVIGGIMEHIEEAGIHSG---DSACVLPPVS 805

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  DI + +        + +   G+    +     +  ++ +E+N +   T     P ++
Sbjct: 806 LEPDILETIMEHTRALARELSVVGLMNIQYAV--KAGIIYVIEVNPRASRT----VPFVS 859

Query: 279 AYAGYSFRELLLWMV 293
              G    ++   ++
Sbjct: 860 KATGVPLAKMATQVI 874


>gi|70953499|ref|XP_745847.1| carbamoyl phosphate synthetase [Plasmodium chabaudi chabaudi]
 gi|56526295|emb|CAH75934.1| carbamoyl phosphate synthetase, putative [Plasmodium chabaudi
            chabaudi]
          Length = 2105

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53
            G S E +    S   C   +     K   I         D D S  L    +  ++    
Sbjct: 1583 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1639

Query: 54   --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                          G    + +       + I  + +  +    + +K            
Sbjct: 1640 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 1699

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           M   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1700 PKWNKFTKLSKAMQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 1759

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 1760 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1817

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    + +   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 1818 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1871

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 1872 IDLATRIL 1879



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 85/296 (28%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 622 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 681

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 682 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGS 741

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 742 AKNVEEAIEVANNIGYPILVRTTFSLGGLNSSFINNEEELIEK-CKEIFLQTDNEIFIDK 800

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +     +                 + Y + + +
Sbjct: 801 SLKGWKEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYE-YYKFREI 859

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 860 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 911


>gi|239827222|ref|YP_002949846.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           WCH70]
 gi|239807515|gb|ACS24580.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. WCH70]
          Length = 450

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ ++ +      +             Y++       
Sbjct: 148 AEEIGYPIMLKASAGGGGIGMQIVRNEEELRKAFEGNQKRAASFFGDGAMYLEKYIANPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A + IG
Sbjct: 208 HIEIQLLSDEHGNCIYLWERECSIQRRHQKVIEEAPSPFLDEETRRKMGETAVKAAKHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTIEFLVDEQKN-FYFLEMNTR 292


>gi|147676840|ref|YP_001211055.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
 gi|189081831|sp|A5D508|CARB_PELTS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|146272937|dbj|BAF58686.1| carbamoylphosphate synthase large subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 1083

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 89/293 (30%), Gaps = 35/293 (11%)

Query: 26  LEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  G +   I         D D              V  V+   KP        G    
Sbjct: 583 LQQEGIEAVIINNNPETVSTDFDTADKLYFEPLTLEDVLNVIEKEKPLGVIVQFGGQTAI 642

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + I  T    + +A   DK                S +           +
Sbjct: 643 NLTAGLAALGVNILGTPVEGIDAAEDRDKFEKLLTGLGIPQSEGRSAVNVEEAQAVAEKL 702

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +++P        + +I     +   + ++   +    +L+++Y+ G E+    +GD
Sbjct: 703 GYPVLVRPSYVLGGRAMEIISSKTELVKYMTEAVQVSPRHPVLVDKYIRGKEVEVDAIGD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +       +   +       +S  +     P  +  +   ++        +A+   G+ 
Sbjct: 763 GNDLFIPGIMEHIERAG---VHSGDSIAVYPPQTLSREEIDKIVEYTLKIGRALKINGLI 819

Query: 245 RSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFREL 288
              ++ D  +  V+ LE+N       P ++ V+  P + A      G S  EL
Sbjct: 820 NIQYVVD--NGGVYVLEVNPRASRTVPVLSKVTGVPMVQAATRAMLGRSLAEL 870



 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G  V  +         D+D             SV  ++A  +PD     
Sbjct: 30  GTQACKALREEGVSVVLVNSNPATIMTDLDIADQVYIEPLAWDSVAEIIARERPDGLLPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +       + +L+   +    + + +   + ++   ++  +     VP     
Sbjct: 90  LGGQTGLNIAVELSEKGVLQDYGVELLGTPLESIKKAENRELFKNLMLEIGEPVPRSTIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +  ++Q +     +    +   Q+L+EQ 
Sbjct: 150 GSVEECLAFAGEIGYPVIVRPAYTLGGTGGGIACREQELVEIAGRGLKMSMIGQVLLEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +       ++  +        +    Y+ ++  A
Sbjct: 210 VAGWKEIEYEVMRDGADNCITVCNMENVDP-VGIHTGDSIVVAPSQTLSDKEYQLLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  D  S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRALKVEGGCNVQFALDLNSMAYYVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|312136530|ref|YP_004003867.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus
           DSM 2088]
 gi|311224249|gb|ADP77105.1| carbamoyl-phosphate synthase large subunit [Methanothermus fervidus
           DSM 2088]
          Length = 1066

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 86/293 (29%), Gaps = 32/293 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G K   ++ +                     + V  ++    PD    
Sbjct: 29  SGSQACKSLREEGVKTILVNSNPATIQTDLEIADKIYLEPLTPKIVAKIIERENPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G               L+ +++  +    +      +   +        VP   ++ 
Sbjct: 89  TMGGQTALNVATKLSEMGALKDIKVIGSSIETIQRVEDREMFANFMKKIGEPVPKYRAVN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++   I  P +++P       G  V K  + +   +      +  +Q+LI+Q V
Sbjct: 149 SVEEAFEAVEEIGFPVIVRPAYTLGGTGGGVAKNKKELEEVVSHGLKMSLVNQVLIDQSV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLA 231
            G                      +      +   +  S  V PA+   D   +  +  A
Sbjct: 209 IG--WKEFEYEVMRDRKGTCITVCNMENVDPMGIHTGESIVVAPAQTLSDEDNQKLRSAA 266

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                A+G  G     F  +P +     +E+N  P ++  S     +   GY 
Sbjct: 267 LKIIDALGIEGGCNIQFALNPETGDYLVIEVN--PRVSRSS--ALASKATGYP 315



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/292 (11%), Positives = 89/292 (30%), Gaps = 31/292 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ GF+   ++ +                       V  ++   KPD       G   
Sbjct: 572 ALKNEGFETIMVNNNPETVSTDYDVSDKLYFEPLTAEDVLEIIEKEKPDGVIVQFGGQSS 631

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +       E ++I  T    +      ++            P        +        
Sbjct: 632 INLAEDLEKEGVKILGTPYESIDKVEDRERFTKVLKKLGIPHPPYGIARSFKEAKKIAKK 691

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++  D+ +   + ++   +    +LI+++  D IE+    +
Sbjct: 692 IGYPVLVRPSYVLGGRAMEIVYNDKELKEYIEEAVKVSPRHPILIDKFLEDAIEVDVDAL 751

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +  + ++         +   G
Sbjct: 752 SDGEDVFIAGIMEHIEEAG---VHSGDSACVIPPQTLSKETIETIEEYTRKLALELKVVG 808

Query: 243 ISRSDFLFDPLSRKV--FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +     + K   + LE N +   T     P ++   G S  ++   +
Sbjct: 809 LINIQYAVKNENGKPKVYVLEANPRASRT----VPFVSKAIGISLAKIAAML 856


>gi|289432887|ref|YP_003462760.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           GT]
 gi|288946607|gb|ADC74304.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           GT]
          Length = 1079

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G +   ++ +                      S+  ++   +PD     
Sbjct: 27  GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 86

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V      +L    +    + I     + D+   +         VP   ++
Sbjct: 87  LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 146

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   H+I  P VI+P       G         +        + +   Q+L+E+ 
Sbjct: 147 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +          +   +     + ++  +
Sbjct: 207 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 265

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        +P   + + +E+N  P ++  S     +   GY    +   
Sbjct: 266 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 321

Query: 292 M 292
           +
Sbjct: 322 I 322



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++     +   +  +   N G  +LI++Y+ G E+   
Sbjct: 699 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            + D          P    +       S +S  V P +   +     +        +A+ 
Sbjct: 759 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 814

Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    F+           V+ LE+N +   T     P ++   G    ++
Sbjct: 815 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 863


>gi|291295303|ref|YP_003506701.1| carbamoyl-phosphate synthase large subunit [Meiothermus ruber DSM
           1279]
 gi|290470262|gb|ADD27681.1| carbamoyl-phosphate synthase, large subunit [Meiothermus ruber DSM
           1279]
          Length = 1038

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 90/299 (30%), Gaps = 32/299 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ +                       +  ++A  +PD    
Sbjct: 29  SGTQAVKALRSVGYQVVLVNSNPATIMTDPELAEGTYLEPLTVEFLEKIIAAERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    +   A     D+   ++ +   GV V    +
Sbjct: 89  TLGGQTALNLSMALYEQGILEKYGVELIGANAAAIKKGEDREEFQKAMLKIGVDVPRGKM 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           V+               P V++P       G  + + +      L +  S +     L+E
Sbjct: 149 VHSLEEGLAFAREVTGYPVVVRPSFTLGGTGGGIAENEAEFVEILSRGLSLSPTHSALVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +         ++  +    
Sbjct: 209 ESIVGWKEYELEVMRDKNDTVVIITSIENLDPMGVHTGDSITVAPAQTLSDVEYQRMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +  +     G S   F  DP S ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 AIAIIREIGVETGGSNIQFAIDPKSGRMIVIEMN--PRVSRSS--ALASKATGFPIAKI 323



 Score = 35.6 bits (80), Expect = 9.1,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 81/268 (30%), Gaps = 17/268 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +  H KP      L G       +   L    +P   +   A
Sbjct: 627 DRLYFEPLTL---EDVLNLAEHEKPIGVIATLGGQ--TPLKLAKKLAEAGVPLLGTSWEA 681

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              + D+    Q+ ++ G+P             +     +  P + +P        + V+
Sbjct: 682 IHKAEDRAEFNQLCAALGIPQPKGAVARTPEEALKLAETLGYPLMARPSYVLGGRAMQVV 741

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L    +       ++        L   V          +A           
Sbjct: 742 RNPEELRWYLSGIYAALAERPSILLDQYLENALELDVDALCDGKQVVVAGIMEH-IERAG 800

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  ++T + P  +  +  + V+        A+G RG+    +        V+ LE N 
Sbjct: 801 VHSGDSATILPPISLTPEQLETVKAYTRKLALAVGVRGLINVQYAI--KDGVVYILEANP 858

Query: 265 QPGMTPVSIFPEMAAYAGYS---FRELL 289
           +   T     P ++   G+    +  L+
Sbjct: 859 RASRT----VPFVSKAIGHPLAKYAALI 882


>gi|56609589|gb|AAW03322.1| hypothetical protein [Cystobacter fuscus]
          Length = 1075

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL + G +V  ++        D                   +LA  +PD    
Sbjct: 29  SGTQAIKALREEGVEVVLLNSNPATVMTDPEFAHRTYIEPITVEVAERILAQERPDSVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110
            + G       +    Q IL+   +    + + A   + D+   K         +P    
Sbjct: 89  TMGGQTALNLAKALAEQGILDKYGVRLIGASLEAINKAEDRQLFKAAMQKIGVALPRSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +     I  P +I+P       G  +    +            +    +L+E+
Sbjct: 149 ASNMQEALALIDDIGFPTIIRPSFTLGGTGGGIAYNREEFEAICRSGLKASPNSTILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +  +  
Sbjct: 209 SVLGWKEYELEVVRDSADNVIIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLREAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 LRIIREIGVDTGGSNIQFGVNPADGRIVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 28/285 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  V    KP  A     G   
Sbjct: 588 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTIEDVLEVSQREKPVGAIVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      L I  T    +  A   ++            P       +         
Sbjct: 648 LRLSVPLEKAGLPILGTSPDAIDRAEDRERFAQLIEKLGLTQPENGVARSHEEAYRVAQR 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+   QS+   + ++ S +    +LI++++    +   +  
Sbjct: 708 IGYPVMVRPSYVLGGRAMEVVYDQQSLERYMREAVSASPEHPVLIDRFLK-EAIEVDLDL 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A      +     +       +S   +  + P  +  D+ + ++  A    + +G  G+
Sbjct: 767 VADRTGAVLVGGVLEHVEEAGVHSGDAACTLPPHSLSPDLVERMKDQAMALAKELGVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F      +K++ LE+N +   T     P ++   G    ++
Sbjct: 827 MNVQFAI--QGKKIYILEVNPRASRT----VPFISKATGMPLAKI 865


>gi|73748891|ref|YP_308130.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           CBDB1]
 gi|73660607|emb|CAI83214.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           CBDB1]
          Length = 1089

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G +   ++ +                      S+  ++   +PD     
Sbjct: 37  GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 96

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V      +L    +    + I     + D+   +         VP   ++
Sbjct: 97  LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 156

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   H+I  P VI+P       G         +        + +   Q+L+E+ 
Sbjct: 157 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 216

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +          +   +     + ++  +
Sbjct: 217 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 275

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        +P   + + +E+N  P ++  S     +   GY    +   
Sbjct: 276 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 331

Query: 292 M 292
           +
Sbjct: 332 I 332



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++     +   +  +   N G  +LI++Y+ G E+   
Sbjct: 709 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            + D          P    +       S +S  V P +   +     +        +A+ 
Sbjct: 769 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 824

Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    F+           V+ LE+N +   T     P ++   G    ++
Sbjct: 825 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 873


>gi|147669652|ref|YP_001214470.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp.
           BAV1]
 gi|146270600|gb|ABQ17592.1| carbamoyl-phosphate synthase large subunit [Dehalococcoides sp.
           BAV1]
          Length = 1079

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G +   ++ +                      S+  ++   +PD     
Sbjct: 27  GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 86

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V      +L    +    + I     + D+   +         VP   ++
Sbjct: 87  LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLTKIGEPVPPSETV 146

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   H+I  P VI+P       G         +        + +   Q+L+E+ 
Sbjct: 147 TTAEDALRVAHMIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +          +   +     + ++  +
Sbjct: 207 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 265

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        +P   + + +E+N  P ++  S     +   GY    +   
Sbjct: 266 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 321

Query: 292 M 292
           +
Sbjct: 322 I 322



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 13/173 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++     +   +  +   N G  +LI++Y+ G E+   
Sbjct: 699 ADSIGYPVVVRPSYVLGGRAMEIVSDASDLVRYMSAAIELNTGHPILIDKYLVGKEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            + D          P    +       S +S  V P +   +     +        +A+ 
Sbjct: 759 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNEHDLATITDYTIRIGKALN 814

Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    F+           V+ LE+N +   T     P ++   G    ++
Sbjct: 815 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGVPMVDI 863


>gi|325288620|ref|YP_004264801.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324964021|gb|ADY54800.1| carbamoyl-phosphate synthase large subunit [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 1075

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 93/297 (31%), Gaps = 32/297 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      ++  +LA  KPD     
Sbjct: 30  GTQACKALKEIGLEVILVNSNPATIMTDVQMADKTYIEPLVPQTLEKILAKEKPDALLPS 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSI 111
           L G  G +  ++      L    +            + D+   K+++   +  V     +
Sbjct: 90  LGGQTGLNLAMELQNQGILAKYGVELIGCTAETIYKAEDREAFKEMMLDIAEPVAESSIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  +    + +   L +    +  +Q L+EQ 
Sbjct: 150 GTLEEGDQFAEKIGYPVIVRPAYTLGGTGGGIACGKKQLREILTRGLQASPINQCLLEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +     +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDAEDNCITVCNMENLDPVGIHTGDSIVVAPSQTLTDRE-YQMLRAAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +A+   G     +  +P SR+   +E+N  P ++  S     +   GY   ++
Sbjct: 269 LKIIRALKVNGGCNVQYALNPESREYVVIEVN--PRVSRSS--ALASKATGYPIAKM 321



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 88/278 (31%), Gaps = 31/278 (11%)

Query: 25  ALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG +   I+                         V  V+   K D       G   
Sbjct: 580 ALQEAGVESIIINNNPETVSTDFDTGDKLYFEPLTTEDVLHVVIKEKADGVLVQFGGQTA 639

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++  +             +             
Sbjct: 640 INLAEPLSKAGVKIYGTSFNAIDLAEDRERFAAMLDELGILQSEGRAATSVEAAKQIADE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V+   + +   L Q+ + +    +L+++Y+ G E     + 
Sbjct: 700 LGFPVLVRPSYVIGGRAMQVVSNLKELEDYLRQAINISPEHPILVDKYLQGKECEVDAVS 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  + L+  ++++ +     + +G RG+
Sbjct: 760 DGETVVIPGVMEHIERAG---VHSGDSLAVYPPQSLTLNEIRQIESITCRIAEKMGVRGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE 276
               F+       V+ LE+N       P ++ V+  P 
Sbjct: 817 INIQFVVVH--GWVYVLEVNPRASRTIPILSKVTNVPM 852


>gi|313202999|ref|YP_004041656.1| carbamoyL-phosphate synthase large subunit [Paludibacter
           propionicigenes WB4]
 gi|312442315|gb|ADQ78671.1| carbamoyl-phosphate synthase large subunit [Paludibacter
           propionicigenes WB4]
          Length = 1456

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD  F 
Sbjct: 411 SGSQALKALKEEGIETVLINPNIATVQTSEGIADKVYFLPVTPEFVERVIEKERPDGVFL 470

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + +   + D+    Q +S   V    S  
Sbjct: 471 SFGGQTALNCGVALFKNKIFEKYGVRVLGTPVQSIIDTEDREIFNQKLSEIDVNYIKSEA 530

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P +++       +G      D  +   +  + ++ +  Q+L+E+
Sbjct: 531 VNDLDNALRAANELGYPVIVRAAYALGGMGSGFCDNDAEMIELV--TKAFAYSPQVLVEK 588

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 589 SLKGW-KEIEYEVVRDKYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNREYHKLREL 647

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 648 AIRIIRHIGIVGECNVQYAFDPFSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 699


>gi|295101479|emb|CBK99024.1| carbamoyl-phosphate synthase large subunit [Faecalibacterium
           prausnitzii L2-6]
          Length = 1083

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 81/302 (26%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G +   +         D D              V  +L   KPD    
Sbjct: 29  SGTQACRALKAEGIETVLLNSNPATIMTDPDVADHVYIEPMTLEVVERILDIEKPDSVLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            L G  G +  ++      L+   I            + D+   +         +     
Sbjct: 89  NLGGQMGLNLSMELARSGYLDRTGIRLLACRPETIDRAEDRELFKETMEKLHQPIIPSEV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  + +    +          +   Q+L+E+
Sbjct: 149 VETLEDALACADRIGYPVIVRPAFTMGGTGGGICENKAKLIEIGTNGLRLSPIHQILVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                 + Y+ ++  
Sbjct: 209 CIAGWKEIEYEVMRDHKGNVITVCNMENLDPVGIHTGDSVVVAPSQTLTDHE-YQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A      +G  G     F   P S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALDIITELGIEGGCNCQFALKPDSFDYAVIEVN--PRVSRSS--ALASKATGYPIAKVAT 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/250 (12%), Positives = 77/250 (30%), Gaps = 10/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            SV  ++A  KPD       G              L I  T +  +  A   ++      
Sbjct: 626 ESVDNIIATEKPDACVVQFGGQTAIKLAKHMDEIGLPILGTPADAIDEAEDRERFDELLE 685

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSS 158
             +       ++      + +   I  P +++P        +IV      +   + + + 
Sbjct: 686 RCNIPRAPGRTVFNLEEALAAADEIGLPVLMRPSYVLGGQNMIVAYTKADVIEYMGVITE 745

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +    +L+++Y+ G E     + D    +    + + +       +S  +        
Sbjct: 746 HVDMDHPVLLDKYIMGTECEVDAICDGENYLIPGIMEQVERTG---VHSGDSICVYPAQH 802

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +       +        + +   G+    +     + KV+ +E+N +   T     P ++
Sbjct: 803 LTQAEIDTMVDYTGRFARELHVTGLVNVQYAV--SNGKVYVIEVNPRSSRT----VPYIS 856

Query: 279 AYAGYSFREL 288
              G    +L
Sbjct: 857 KVTGVPMVDL 866


>gi|242790098|ref|XP_002481495.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218718083|gb|EED17503.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 696

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P         
Sbjct: 117 YGFLSENSEFAQKCANAGLVFIGPPWKAIEDMGDKSRSKKIMTAAGVPCVPGYHGTNQDP 176

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                    +  P +IK +KGG   G+ +++        L  +       + +   L+ +
Sbjct: 177 LFLESEADKMQYPVLIKAVKGGGGKGMRIVRSKTEFQDQLRSAKMEALNSFGNDHMLVEK 236

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP  +  D++++ + 
Sbjct: 237 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPDSVRKDLWEKARA 296

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  +   +++E+N +
Sbjct: 297 AALA----VGYEGAGTVEFIFDNDTGNFYFMEMNTR 328


>gi|301802065|emb|CBW34797.1| carbamoyl-phosphate synthase large chain [Streptococcus pneumoniae
           INV200]
          Length = 1058

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 85/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTFEDVMNVIDLEQPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +         +  
Sbjct: 639 AINLAEPLAKAGVTILGTQVADLDRAEDRDLFEQALKELDIPQPPGQTATNEEEAALAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPDHPVLVDSYIVGQECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    V   +       +S  +     P  +   + + +          + C G
Sbjct: 759 SDGKNVLIPGIVEHIERAG---VHSGDSMAVYPPQTLSQKVQETIADYTKRLAIGLHCLG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      KV+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDEKVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860


>gi|256391600|ref|YP_003113164.1| carbamoyl-phosphate synthase, large subunit [Catenulispora
           acidiphila DSM 44928]
 gi|256357826|gb|ACU71323.1| carbamoyl-phosphate synthase, large subunit [Catenulispora
           acidiphila DSM 44928]
          Length = 1099

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVILVNSNPATIMTDPEVADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  V      +LE   +    + I A     D+ + K++V + G     S++
Sbjct: 89  TLGGQTALNTAVALAENGVLEKYNVELIGANIAAIQSGEDREKFKRIVETIGAESARSVI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P V++P       G      ++ +        + +   ++L+E
Sbjct: 149 CHSMEDCLAGVEELGGYPVVVRPSFTMGGAGSGFAHNEEELRRIAGTGLALSPTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +F    +      +          +  +    
Sbjct: 209 ESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPSMTLTDREYQELRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +        G     F  +P   ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIRAVGVDTGGCNIQFAVNPADGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|149002647|ref|ZP_01827579.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
 gi|147759258|gb|EDK66251.1| carbamoyl phosphate synthase large subunit [Streptococcus
           pneumoniae SP14-BS69]
          Length = 352

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G++V  ++        D+ +                +L    PD     
Sbjct: 30  GTQACLSLKEEGYEVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKEGPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKNGILDELGVELLGTKLSAIDQAEDRDLFKQLMEELEQPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 NTVEEAVAFAATIGYPVIVRPAFTLGGTGGGMCANEKELREITENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S D   +     +F    +                 +  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDSADNALVVCNMENFDPVGIHTGDSIVFAPAQTMSDYE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|78188156|ref|YP_378494.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium
           chlorochromatii CaD3]
 gi|78170355|gb|ABB27451.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           chlorochromatii CaD3]
          Length = 492

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++ +            V  ++   +PD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIEFADATYIEPITPAYVQKIIEREQPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V      ILE   +    + + A   + ++      +   G+ +   + 
Sbjct: 89  TMGGQTALNIAVSLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGVF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       +    I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAREALEEIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGLNESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 CLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IRIIREIGVETGGSNIQFAINPKDGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|85708555|ref|ZP_01039621.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1]
 gi|85690089|gb|EAQ30092.1| carbamoyl-phosphate synthase large subunit [Erythrobacter sp. NAP1]
          Length = 1107

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQAIKALKEEGYRVVLVNSNPATIMTDPEFADATYVEPITPEIVAKIIAKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G              +L    +    +   A   + ++ R ++ +   G+    S  
Sbjct: 89  TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDKIGLESARSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D       P +I+P       G  +    +     + +    +   ++LIE+
Sbjct: 149 ANTVDEARDVLERTGLPAIIRPSFTLGGTGGGIAYNKEEFDRIVREGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRADNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IEVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 10/163 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P        + ++  +  +   +  + + +    +L++QY  D IE   
Sbjct: 741 AARIGYPVLLRPSFVLGGRAMEIVDSEAQLDDYINTAVTVSGESPVLVDQYLRDAIECDV 800

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +  DI +E++R A    +A+G
Sbjct: 801 DALCDGKEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLSADIIEEMERQAEALARALG 857

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            RG+    F       +V+ +E+N +   T     P +A   G
Sbjct: 858 VRGLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIG 894


>gi|225028429|ref|ZP_03717621.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353]
 gi|224954273|gb|EEG35482.1| hypothetical protein EUBHAL_02703 [Eubacterium hallii DSM 3353]
          Length = 1077

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 92/288 (31%), Gaps = 30/288 (10%)

Query: 25  ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           A ++ G++   +           D+          +  V  ++   KPD A     G   
Sbjct: 582 AFKEMGYETIIVNNNPETVSTDFDIADKLYFEPLTEEDVEHIVELEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T +  + +A   +             P   ++      + + + 
Sbjct: 642 IKLTEKLNKIGVPILGTSAENVDAAEDRELFDEILEQCCIPRPKGGTVFTKEEAIKTANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +I+P       G+ +   D+ I   +     +     +LI++Y+ G+E+    + 
Sbjct: 702 IGYPVLIRPSYVLGGQGMQIAISDEDISEFMDVIQRYAQEHPILIDKYLMGVEVEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +           + +      +   I K +     L  +A+   G+
Sbjct: 762 DGEEIVIPGIMQHVERAGIHSG---DSISVYPARDLSPKIKKVIGHYTKLLAKALHVIGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F+      +V+ +E+N +   T     P ++   G    +L   
Sbjct: 819 INIQFIV--YQDEVYVIEVNPRSSRT----VPYISKVTGIPIVDLATK 860



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 87/301 (28%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57
           G     +L++ G  V  +           D+             +  ++  + PD     
Sbjct: 30  GTQACRSLKEEGIHVVLVNSNPATIMTDKDIADEVYIEPLTPEVIKKLILKVSPDSLLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A   ++ +         +     +
Sbjct: 90  LGGQAALNIAMELDECGFLKEHKVKLIGTTGKTIRKAEDREEFKETMEKIGEPIAPSQIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  +   ++     +      +   Q+L+E+ 
Sbjct: 150 TNVEDGLEYAQKIGYPVVLRPAYTLGGSGGGIADNEEEFVEIIQNGLRLSRVGQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGW-KEIEYEVMRDGNGTCITVCNMENLDPVGVHTGDSIVVAPSQTLGDKEYQMLRNSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     F  +P +     +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIDELGVEGGCNVQFALNPDTFDYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|138895110|ref|YP_001125563.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248308|ref|ZP_03147009.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp.
           G11MC16]
 gi|134266623|gb|ABO66818.1| Acetyl-CoA carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212033|gb|EDY06791.1| Carbamoyl-phosphate synthase L chain ATP-binding [Geobacillus sp.
           G11MC16]
          Length = 450

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 41/143 (28%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ +   +  +      S             Y++        + 
Sbjct: 151 IGYPVMLKASSGGGGIGMHIAHDEAELRQAFEGSQKRAASFFGDGTMYIEKYIERPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
              L                ++          P+    +  +      A  A + IG   
Sbjct: 211 IQLLADGHGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVQAARYIGYAN 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL D      ++LE+N +
Sbjct: 271 AGTIEFLVDEQKN-FYFLEMNTR 292


>gi|183600125|ref|ZP_02961618.1| hypothetical protein PROSTU_03660 [Providencia stuartii ATCC 25827]
 gi|188022413|gb|EDU60453.1| hypothetical protein PROSTU_03660 [Providencia stuartii ATCC 25827]
          Length = 392

 Score = 58.7 bits (140), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 30/273 (10%), Positives = 76/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYDHAPAMHVAHRSYTVNMLDGEAIRQLVEKEKPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P  ++  L       +  + + +          +      +
Sbjct: 84  EAIATKTLVELEQQGQKVVPSANAVYLTMNREGIRRLAAEELGLPT-SDYRFVETEADFV 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  V++ +Q +            G +    + +    + 
Sbjct: 143 TAAKEIGFPCIVKPVMSSSGKGQSVMRGEQDLKAA---WHYSQEGGRTGQGRVIVEKMIH 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                          +       +  +          P ++     +  Q  A     A+
Sbjct: 200 FDFEITMLTINAVDGIHFCAPIGHR-QEKGDYRESWQPQQMSEKALENAQAAAAKIVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        ++ + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEIIFNEVSPRPHDTGM 289


>gi|296284017|ref|ZP_06862015.1| carbamoyl phosphate synthase large subunit [Citromicrobium
           bathyomarinum JL354]
          Length = 1106

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++A  KPD    
Sbjct: 29  SGTQAIKALKEEGYRVILVNSNPATIMTDPEFADATYIEPITPEVVEKIIAKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G               LE   +    +   A   + ++ R ++ +   G+    S +
Sbjct: 89  TMGGQTALNCALKLFESGALEKHGVQMIGADADAIDKAENRQRFREAMDKIGLESAASGV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + L     P +I+P       G  +          + +    +   ++LIE+
Sbjct: 149 ARSVDQAFEVLERTGLPSIIRPSFTLGGTGGGIAYNKSEFERIVREGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNCIIICAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPENGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 39.1 bits (89), Expect = 0.81,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 66/173 (38%), Gaps = 10/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P        + V+  +  +   +  +   +    +L++QY  D IE   
Sbjct: 738 ARKIGYPVLLRPSYVLGGSAMQVVDSEAQLDDYIASAVKVSGESPVLVDQYLRDAIECDV 797

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D +  V    +   +       +S  ++  + P  +  ++ +E++R +    + + 
Sbjct: 798 DVLCDGTDIVVAGVMQHVEEAG---VHSGDSACTLPPYSLSAEVVEEIERQSEALARELK 854

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+  + F       +++ +E+N +   T     P +A   G    +    +
Sbjct: 855 VVGLMNAQFAV--KEGEIYLIEVNPRASRT----VPFVAKTIGQPIAKYAARI 901


>gi|210617103|ref|ZP_03291413.1| hypothetical protein CLONEX_03635 [Clostridium nexile DSM 1787]
 gi|210149492|gb|EEA80501.1| hypothetical protein CLONEX_03635 [Clostridium nexile DSM 1787]
          Length = 1074

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALRNLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S  
Sbjct: 89  NLGGQSGLNLCSELAEAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNVEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   S           +       ++  +        I  ++ K +Q  
Sbjct: 209 SILGWEELELEVVRDSEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKRLQEK 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++   G     +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 268 SHKVVDSVKVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 41.8 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 40/263 (15%), Positives = 82/263 (31%), Gaps = 27/263 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALRKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R         +P     +     ++    
Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFREMMEKLDIPMPESGMAVNVEEALEIAEK 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI++++           
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDAESMVGYMNAAVGVTPDRPILIDRFL---GHATECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKYISEENVKTIKEYTRRIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +    +     + KV+ LE N +
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPR 838


>gi|114570688|ref|YP_757368.1| carbamoyl phosphate synthase large subunit [Maricaulis maris MCS10]
 gi|114341150|gb|ABI66430.1| carbamoyl-phosphate synthase large subunit [Maricaulis maris MCS10]
          Length = 1085

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++                    +    V  V+   +PD    
Sbjct: 29  SGVQAVKALKAEGYRVILVNSNPATIMTDPELADATYIEPITPDMVAKVIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   + +L+L  +    +       + ++ R +  +   G+    S  
Sbjct: 89  TMGGQTALNCALELDKRGVLDLFGVEMIGAKADVIDKAENRERFRDAMDKIGLESPRSRT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P +I+P       G  +    +            +  D++L+E+
Sbjct: 149 VHSMAEAEAVMSEIGLPAIIRPSFTLGGTGGGIAYNVEEYRHICGTGLDASPVDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SIVGWKEFEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.022,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 65/163 (39%), Gaps = 10/163 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P V++P        + +I++  S    + ++ + +    LL+++Y  D  E+  
Sbjct: 720 AEQLGFPLVLRPSYVLGGRAMEIIREMDSFERYIREAVNVSGKSPLLLDRYLTDADEIDV 779

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +       +S  ++  + P  +  ++  E++       +AIG
Sbjct: 780 DAICDGTDVWVAGVMQHIEEAG---VHSGDSACSLPPYNLSDEMIAELKAETVAMAKAIG 836

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            +G+    F     + ++F LE+N +   T     P +A   G
Sbjct: 837 VKGLMNVQFAV--KNGEIFVLEVNPRASRT----VPFVAKAIG 873


>gi|332289579|ref|YP_004420431.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium
           anatis UMN179]
 gi|330432475|gb|AEC17534.1| phosphoribosylglycinamide formyltransferase 2 [Gallibacterium
           anatis UMN179]
          Length = 393

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 82/304 (26%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYADAPAHQVAHRAYTISMLDGDALKKLIEKEKPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATDTLVELEQQGYNVIPTAKAVKLTMNREGIRRLAAEELGLPT-SPFQFVDNFADFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  ++K  + +                       G  + 
Sbjct: 143 QAVEKIGLPCVVKPIMSSSGHGQSILKNREQLQQAWQY---------AQEGGRAGGERVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V      S+                  P  +     ++ Q +A  
Sbjct: 194 VEGFIRFDYEITLLTVRHRGGTSFLAPIGHVQVDGDYRESWQPQAMSEIALQKAQHIAEK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G  GI   +        +V + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITGALGGYGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQDLSEFALHARAILGLP 311

Query: 285 FREL 288
             ++
Sbjct: 312 IPQI 315


>gi|315498931|ref|YP_004087735.1| carbamoyl-phosphate synthase, large subunit [Asticcacaulis
           excentricus CB 48]
 gi|315416943|gb|ADU13584.1| carbamoyl-phosphate synthase, large subunit [Asticcacaulis
           excentricus CB 48]
          Length = 1098

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              V  ++A  +PD    
Sbjct: 29  SGVQACKALRQEGYRIILVNSNPATIMTDPDVADATYIEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      +L    +    +       + D+ + +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALENNGVLAKYNVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESAKSAV 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + +    + L +    P VI+P    +  G  +    +     + +    +   ++LIE
Sbjct: 149 AHSWEEAVEALKTIGGLPAVIRPSFTLAGTGGGIAYNQEEFRDIVTRGLDLSPTTEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +       
Sbjct: 209 ESIVGWKEYEMEVVRDKADNCIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRSA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLAVLREIGVETGGSNVQFALNPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 29/168 (17%), Positives = 65/168 (38%), Gaps = 8/168 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H +  P VI+P        + +I+ D+ +   + ++   +    +LI+QY+        
Sbjct: 720 AHEVGYPIVIRPSYVLGGRAMEIIRDDEQLTRYVREAVQVSGDSPVLIDQYLSAAIEVDA 779

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                S +         +       +S  ++  + P  +  +  KE++R      +A+  
Sbjct: 780 --DALSDETGVFVAGIMEHIEEAGVHSGDSACALPPFSLKPETVKELERQTIELAKALKV 837

Query: 241 RGISRSDF-LFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +G+    F + +P +  K++ LE+N +   T     P +A   G    
Sbjct: 838 KGLMNVQFAILNPYTDPKIYVLEVNPRASRT----VPFVAKTLGKPLA 881


>gi|269121268|ref|YP_003309445.1| carbamoyl-phosphate synthase, large subunit [Sebaldella termitidis
           ATCC 33386]
 gi|268615146|gb|ACZ09514.1| carbamoyl-phosphate synthase, large subunit [Sebaldella termitidis
           ATCC 33386]
          Length = 1069

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 98/291 (33%), Gaps = 32/291 (10%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
            +AL+  G +   I+ +                       V  ++   KP+       G 
Sbjct: 580 IAALKKMGIESIIINNNPETVSTDFSTADKLYFEPLTAEDVLEIVEKEKPEGVILQFGGQ 639

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                  +   + ++I  T    +  A   +K            P   ++      + + 
Sbjct: 640 TAIKLAGELTKKGIKIIGTSFEKIDEAEDREKFDKLTDRLKIKKPEGKAVWTAEEGVKTA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +++P       G+ +   + ++   L  +   +  + +LI++Y++G E+    
Sbjct: 700 EAIEYPVLVRPSYVLGGQGMEICYDECNLRKYLESAFYRDSENPVLIDKYLNGAEIEVDA 759

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V P +   + I K+V+ +  +  + +  
Sbjct: 760 ICDGEDILI----PSIMEHLERAGVHSGDSITVCPTQNVSEDIKKKVEEITKVLARELEI 815

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    F+      +++ +E+N +   T     P ++   G    EL   
Sbjct: 816 LGMINIQFI--AYKEELYIIEVNPRSSRT----VPYVSKITGIPVIELATR 860



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 49/302 (16%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL + G +V  I+ +                      ++  ++A  KPD    
Sbjct: 28  SGTQACEALREEGIEVVLINSNPATIMTDSKTADKIYIEPMNIQTIEKIIAREKPDSLLP 87

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +  V+      LE   +    + I +     D+   R   +     V     
Sbjct: 88  GMGGQTALNLAVELKDAGILEKYNVNIIGTSIESIKKGEDRELFRESMMKIGEPVIDSSI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D    I  P V++P       G  +    + +   LL+    +   Q+L+E+
Sbjct: 148 VTNLEDGQDFAAKIGYPVVVRPAYTLGGSGGGIAGSPEELKDILLKGLQLSRVGQVLVEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   I V   +       ++  +        +    Y+ ++  
Sbjct: 208 SILGW-KEIEYEVIRDKDGNCITVCNMENIDPVGIHTGDSIVTAPSQTLSDKEYQMLRTS 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      IG  G     F  +PLS +   +EIN  P ++  S     +   GY    +  
Sbjct: 267 SIKIINEIGIVGGCNVQFALNPLSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVAA 322

Query: 291 WM 292
            +
Sbjct: 323 KL 324


>gi|170693817|ref|ZP_02884974.1| urea carboxylase [Burkholderia graminis C4D1M]
 gi|170141235|gb|EDT09406.1| urea carboxylase [Burkholderia graminis C4D1M]
          Length = 1200

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 60/179 (33%), Gaps = 16/179 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ V      +             +      +++        + 
Sbjct: 150 IGYPVMLKSTAGGGGIGMRVCWNVDELSAHFDVVKRLGQNNFSDAGVFLEKYIERARHLE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
                               ++  +       PA    + +   +   A    +A+  R 
Sbjct: 210 VQVFGDGHGDAIALGVRDCSVQRRNQKVLEETPAPCLPEGMPAALCDAAVKLAKAVSYRS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D  +++ ++LE+N +     G+T      ++    G    +L+ WM+E A+
Sbjct: 270 AGTVEFVYDSAAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELAA 317


>gi|329910952|ref|ZP_08275415.1| Phosphoribosylglycinamide formyltransferase 2 [Oxalobacteraceae
           bacterium IMCC9480]
 gi|327546039|gb|EGF31115.1| Phosphoribosylglycinamide formyltransferase 2 [Oxalobacteraceae
           bacterium IMCC9480]
          Length = 404

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 78/283 (27%), Gaps = 25/283 (8%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                       ++  ++A  KPDL    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYADAPGQQVAHRAHVINMADGDALAALIALEKPDLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +       + +  T      +       R                       
Sbjct: 87  EAIATTRLMELEQAGDVTVIPTARAAWLTMNREGIRRLAAEELQLPTSPYRFADSKAELQ 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P +IKP+   S  G   +     +      +++ +      +I +     E 
Sbjct: 147 AACAEIGFPCIIKPVMSSSGKGQSKLDGPDEVAAAWDYAAAGSRVDAGRVIVEGFIDFEY 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   SLD     +         ++ +        P  +P       Q +A      
Sbjct: 207 EITLLTVRSLDEHGSVITSFCEPIGHIQVNGDYVESWQPHPMPSAALVNAQAIAKAVTDN 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +G RG+   +        KV++ E++ +P      +    +  
Sbjct: 267 LGGRGLFGVELFV--KGDKVWFSEVSPRP--HDTGMVTMASQV 305


>gi|172038031|ref|YP_001804532.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
 gi|171699485|gb|ACB52466.1| D-alanine--D-alanine ligase [Cyanothece sp. ATCC 51142]
          Length = 340

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 66/270 (24%), Positives = 107/270 (39%), Gaps = 22/270 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
              +A    DLA   +          +++L+LL IPY  +     AL+ +K ++K +V S
Sbjct: 75  IQWIAEQNIDLALPQM-FCIPGMTQYRSLLDLLNIPYLGNTAELMALTANKAKAKAIVRS 133

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            GV V    L+ +    +   + PP VIKP    +SLG+ ++K         L+ +    
Sbjct: 134 MGVKVPYGELLRQGNTLN---LRPPVVIKPDNSDNSLGVTLVKTMDE-YEAGLKKAFEYA 189

Query: 163 GDQLLIEQYVDGIELTC----------------GVMGDASLDVTEIAVPKSDFYSYELKY 206
              L+ E    G E+ C                  +      +           + EL Y
Sbjct: 190 DQVLVEEYIELGREVRCGTIVKNGELISLPLEEYAVNSKDHPIRNHEDKLKKDDAGELTY 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ++ +              + VQ +A   HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 AAKDKKKAWIVDSNDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQAWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             +P S+ P MA   G S  ELL   + +A
Sbjct: 309 SFSPKSVIPMMAQAKGISLNELLEIAINEA 338


>gi|114328409|ref|YP_745566.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1]
 gi|114316583|gb|ABI62643.1| urea carboxylase [Granulibacter bethesdensis CGDNIH1]
          Length = 1197

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            ++   I  P +IK   GG  +G+ + +    +          +  +      Y++    
Sbjct: 144 HEAAGEIGYPVMIKSTAGGGGIGLQLCRSADELGPLFETVRRLSESNFKDGGIYLEKYVA 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +        +  V         L+  +       PA   P      +   A    +
Sbjct: 204 RARHIEVQIFGDGQGHVVALGERDCSLQRRNQKVVEETPAPNLPAATRAAMMDAAIRLGR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +        +F++D  + + ++LE+N +     G+T            G    +L+ WM
Sbjct: 264 HVAYESAGTVEFIYDDAADQFYFLEVNTRLQVEHGVTE--------QVTGV---DLVEWM 312

Query: 293 VEDAS 297
           V  A+
Sbjct: 313 VRQAA 317


>gi|295113097|emb|CBL31734.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Enterococcus sp. 7L76]
          Length = 637

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 156 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 215

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 216 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 275

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 276 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 335

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 336 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 392

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 393 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 437


>gi|227553521|ref|ZP_03983570.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           HH22]
 gi|227177348|gb|EEI58320.1| carbamoyl phosphate synthase large subunit [Enterococcus faecalis
           HH22]
          Length = 922

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 33/291 (11%), Positives = 87/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+    P        G  
Sbjct: 441 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVMNVIDLENPIGVIVQFGGQT 500

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +       + ++I  T    L  A + D         +   P   +       +    
Sbjct: 501 AINLAEPLTKQGVKILGTTIEDLDRAENRDLFEQALQELAIPQPPGDTATSAEEAVVIAD 560

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L++ Y+ G E     +
Sbjct: 561 RIGYPVLVRPSYVLGGRAMEIVENQKDLEDYMRHAVKASPEHPVLVDSYLLGQECEVDAI 620

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  +I   +          + C G
Sbjct: 621 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQYLSQEIQATIADYTKKLALGLNCVG 677

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G    ++    +
Sbjct: 678 MMNIQFVIHE--NRVYVIEVNPRASRT----VPFLSKITGIPMAQVATKAI 722



 Score = 42.9 bits (99), Expect = 0.062,   Method: Composition-based stats.
 Identities = 25/173 (14%), Positives = 55/173 (31%), Gaps = 5/173 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +++P       G  +   ++ +          +   Q LIE+ + G +   
Sbjct: 20  FAKRIGYPIIVRPAFTLGGTGGGMCDTEEELRQIAENGLKLSPVTQCLIEKSIAGFKEIE 79

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +   S D   +     +F    +                 + Y+ ++  +    +A+ 
Sbjct: 80  YEVMRDSADNAIVVCNMENFDPVGIHTGDSIVFAPSQTLSDYE-YQMLRDASLKIIRALK 138

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G        DP S   + +E+N  P ++  S     +   GY   +L   +
Sbjct: 139 IEGGCNVQLALDPHSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAKI 187


>gi|167648241|ref|YP_001685904.1| carbamoyl phosphate synthase large subunit [Caulobacter sp. K31]
 gi|167350671|gb|ABZ73406.1| carbamoyl-phosphate synthase, large subunit [Caulobacter sp. K31]
          Length = 1105

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  +         D D              V  ++A  +PD    
Sbjct: 37  SGVQACKALRAEGYRIILVNSNPATIMTDPDVADATYIEPITPDMVAKIIAKERPDALLP 96

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L    +    +       + D+ + +  +   G+    S  
Sbjct: 97  TMGGQTALNTALALEADGTLAKYGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPKSKA 156

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P +I+P    +  G  +    +     + +    +   ++LIE+
Sbjct: 157 AHNMDEAREGLAFVGLPAIIRPSFTLAGTGGGIAYNLEEFEEIVERGLDLSPTTEVLIEE 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +        
Sbjct: 217 SVLGWKEYEMEVVRDTADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQWMRAAS 276

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 277 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 332

Query: 291 WM 292
            +
Sbjct: 333 RL 334



 Score = 39.9 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 62/182 (34%), Gaps = 9/182 (4%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P+V++P       G+ +I+  + +   +  +   +    +L++ Y+ 
Sbjct: 718 WDEARAKGDEIGFPFVMRPSYVLGGRGMEIIRDHEHLERYIANTGEISFEHPILLDHYLS 777

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  V          +A    +       +S  ++  + P  +     +E++R    
Sbjct: 778 -RATEVDVDALCDGTDVFVAG-VLEHIEEAGVHSGDSACSMPPFSLSAATVEELKRQTVK 835

Query: 234 AHQAIGCRGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              A+  RG+    F  +     + +++ LE+N +   T     P +A   G     +  
Sbjct: 836 MALALNVRGLMNVQFAIEEPHSDAPRIYVLEVNPRASRT----VPFVAKTIGQPVAAIAA 891

Query: 291 WM 292
            +
Sbjct: 892 KI 893


>gi|296879965|ref|ZP_06903936.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP07]
 gi|296429031|gb|EFH14907.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP07]
          Length = 734

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|291523486|emb|CBK81779.1| carbamoyl-phosphate synthase large subunit [Coprococcus catus GD/7]
          Length = 1066

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 84/301 (27%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++                         +  ++   +PD     
Sbjct: 30  GTQACRSLKEEGIEVVLVNSNPATIMTDKQIADKVYIEPLTTEVLKKIIKKEEPDSILPT 89

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           L G         +     L+E      G  +  +   + R     +   +    +     
Sbjct: 90  LGGQAALNLAMELDESGFLVENRVRMIGTSSQTIKKAEDRLAFKETMEKIGEPCAASEVC 149

Query: 116 ----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D       P VI+P       G  +    Q +          +   Q+L+E+Y
Sbjct: 150 TTLQGCFDFAEKNGYPVVIRPAYTLGGSGGGIAHDAQQLHDIASNGLRLSRVGQVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGW-KEIEYEVIRDSYGNCITVCNMENIDPVGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               Q +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIQELDIHGGCNVQYALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/257 (13%), Positives = 89/257 (34%), Gaps = 15/257 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++    PD A     G       +   +  + +P   +       + D+    ++
Sbjct: 618 EDVENIVRLEHPDGAVVQFGGQ--TAIKLTQAIMKMGVPIYGTQAEDVDAAEDRELFDEI 675

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +  C +P      +      + + + +  P +I+P       G+ +   D  I   +   
Sbjct: 676 LEKCKIPRPAGTTVFTTEEALKAANHLGYPVLIRPSYVLGGQGMQIAVNDGDIVEFMNII 735

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +       +LI++Y+ G E+    + D    +     P    +       S +S  + PA
Sbjct: 736 NQTVQEHPILIDKYLMGKEVEVDGVCDGKDVLI----PGIMEHIERAGIHSGDSISIYPA 791

Query: 218 KIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
           +   D +  +++       + +  +G+    F+      +V+ +E+N +   T     P 
Sbjct: 792 QHLSDAVIDKIEDYTAKLAKGLHVKGLLNIQFIV--YQEEVYVIEVNPRSSRT----VPY 845

Query: 277 MAAYAGYSFRELLLWMV 293
           ++   G    ++    +
Sbjct: 846 ISKVTGIPIVDIASKCI 862


>gi|255657544|ref|ZP_05402953.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-23m63]
 gi|296452783|ref|ZP_06894471.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP08]
 gi|296258379|gb|EFH05286.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP08]
          Length = 774

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 101/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  + + ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|313904323|ref|ZP_07837701.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
 gi|313470873|gb|EFR66197.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cellulosolvens 6]
          Length = 1072

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDRSV----------GLVLAHLKPDLAFNV 57
           G  C  +L++ G +V  +           D+   V            ++   KPD     
Sbjct: 30  GTQCCRSLKEEGIEVVLLNSNPATIMTDGDIADRVYIEPLTVEVVQQLIIKEKPDSILPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           + G  G +  +       L    +    +  L    + D+   K  +      V     +
Sbjct: 90  MGGQAGLNLAMELDDNGFLAEHNVRLIGTTALTIKKAEDRQMFKDTMEKIGEPVAASEVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P V++P       G  +    + +   L      +   ++L+E+Y
Sbjct: 150 HSIEHGQRFAEKIGYPVVLRPAYTLGGSGGGIAHNQEELVEILSNGLRLSRVHEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGWKEIEYEVMRDGAGNVITVCNMENLDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALKPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 92/281 (32%), Gaps = 30/281 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL---H-------GNFGED 65
           A    G++   I         D D +  L    L P+   N++   H             
Sbjct: 582 AFAREGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENIVNVEHPDGAVVQFGGQTA 641

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L  + +P   +       + D+    Q++    +P      +      +   + 
Sbjct: 642 IKLTEALMKMGVPILGTSAEDVDAAEDRELFDQILRKTEIPRAAGRTVFTAEEGVKVANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   + +     +L+++Y++G E+    + 
Sbjct: 702 LGYPVLVRPSYVLGGQGMQIAINDEDITKYINVINRYTQDHPILVDKYLEGTEIEVDAVC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +           + +      +  +I K+++        A+   G+
Sbjct: 762 DGEDILIPGIMQHIERAGIHSG---DSISVYPAKDLTDEIKKKIEIDTKKLANALHVLGM 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               F+      +V+ +E+N +   T     P ++   G  
Sbjct: 819 INIQFIV--YKDEVYVIEVNPRSSRT----VPYISKVTGIP 853


>gi|158520138|ref|YP_001528008.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus
           oleovorans Hxd3]
 gi|158508964|gb|ABW65931.1| carbamoyl-phosphate synthase, large subunit [Desulfococcus
           oleovorans Hxd3]
          Length = 1075

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 84/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  ++ +                      +V  ++   +P     
Sbjct: 29  SGTQACKALKEEGYSVVLVNSNPATIMTDPEFADATYIEPVTPEAVAAIIEKERPCAILP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +       +       +E+       +  A   D  R         +P    
Sbjct: 89  TLGGQTGLNTAVAVAEMGVLEKFNVEMIGASLSAIKKAEDRDLFRKAMNNIGLRIPRSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        I  P +++P       G  V      +          +  +Q++IE+
Sbjct: 149 ATSMDQVRAIADEIGLPLIVRPSFTLGGTGGGVAHTQAELDALSAGGLEASLINQVMIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +   +      +        
Sbjct: 209 SVVGWKEYELEVMRDRADNVVIICSIENLDPMGVHTGESITVAPIQTLSDKEYQVMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIMREIGVDTGGSNVQFAVNPANGEMVVVEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 22/261 (8%), Positives = 73/261 (27%), Gaps = 10/261 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   K D       G    +           I  T    + 
Sbjct: 611 DKLYFEPLTV---EDVLHIIDTEKCDGVIVQFGGQTPLNIAEALARAGAPIIGTSPESIR 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            +       +         P   + +           +  P +++P        + ++  
Sbjct: 668 RSEDRKFFAAMLSKLGLLQPPNGTAVNVEEAAAIAQNLGYPVIVRPSFVLGGRAMKIVYT 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +      +   +    +L++++++   +   V   +      +     +       +
Sbjct: 728 PAELANFARHAIKASPKHPILVDKFLE-DAIELDVDAISDTTGHTVIGGIMEHIEEAGIH 786

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  + P  +   +  E+ R        +   G+    +        ++ +E+N + 
Sbjct: 787 SGDSACVLPPHSVKPHVIDEIIRATKAMAAELKVVGLMNVQYAV--KGDTLYVIEVNPRA 844

Query: 267 GMTPVSIFPEMAAYAGYSFRE 287
             T     P ++   G +  +
Sbjct: 845 SRT----VPFVSKATGVALAK 861


>gi|20095102|ref|NP_614949.1| carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
 gi|22095503|sp|Q8TUT7|CARB2_METKA RecName: Full=Carbamoyl-phosphate synthase large chain, C-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|19888393|gb|AAM02879.1| Carbamoylphosphate synthase large subunit [Methanopyrus kandleri
           AV19]
          Length = 542

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/285 (11%), Positives = 93/285 (32%), Gaps = 26/285 (9%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++ G+K   ++ +                       V  ++   +P        G   
Sbjct: 31  AIQEEGYKAIIVNNNPETVSTDYDTSDKLYFEPITLEDVLNIVEKERPIGVLTQFGGQTS 90

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V      + +  T    +      D+            P   +       ++    
Sbjct: 91  VNLTVPLAERGVRVLGTDPDDVDRLEDRDRFSKLLKKLGIPQPESGTANDPEEAVEVAED 150

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   + +++  +    +LI+++++G  + C + G
Sbjct: 151 IGYPVLVRPSYVIGGRAMEIVYDEEDLRRYIEEAAKVSPEHPILIDRFIEG-GIECEIDG 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +     +       +S  ++  V P  +P    + V   A    +     G+
Sbjct: 210 ARDEAGNVLIPGIMEHIEEAGVHSGDSACVVPPQTLPEHAQETVLEYAEDIAEGANVIGL 269

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F++DP   +V+ +E N +   T     P ++   G    ++
Sbjct: 270 INIQFVYDPEEDEVYVIEANPRASRT----VPFISKAVGIPLAKI 310


>gi|82705197|ref|XP_726870.1| carbamoyl phosphate synthetase II [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23482455|gb|EAA18435.1| carbamoyl phosphate synthetase II-related [Plasmodium yoelii
           yoelii]
          Length = 1192

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53
           G S E +    S   C   +     K   I         D D S  L    +  ++    
Sbjct: 657 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 713

Query: 54  --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                         G    + +       + I  + +  +    + +K            
Sbjct: 714 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 773

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           P           M   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 774 PKWNKFTKLSKAMQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 833

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 834 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 891

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
           ++++++    + +   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 892 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 945

Query: 286 RELLLWMV 293
            +L   ++
Sbjct: 946 IDLATRIL 953


>gi|188587054|ref|YP_001918599.1| carbamoyl-phosphate synthase large subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
 gi|226700935|sp|B2A170|CARB_NATTJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|179351741|gb|ACB86011.1| carbamoyl-phosphate synthase large subunit [Natranaerobius
           thermophilus JW/NM-WN-LF]
          Length = 1106

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G    S L + G +V  ++ + +                     +  ++   +PD     
Sbjct: 30  GTQACSVLREEGIEVVLVNSNPATIMTDTNMADKVYLEPLEKDYIIKIIEKERPDGLIAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           + G  G +  ++           +++  T    +  A   D  ++        +P    +
Sbjct: 90  MGGQVGLNLAMELVDSGILDKYEVDLLGTTMSSIKKAEDRDVFKTTMNDIGEPIPESKIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    I  P +++P       G  V + +Q +          +  +Q+L+E+ 
Sbjct: 150 STVDQAKDFAKNIGYPVIVRPAYTLGGTGGGVAQNEQQLSQIASNGIRSSLINQILVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                 I +   +       ++  +        +    ++ +++ A
Sbjct: 210 VIGW-KEVEYEVMRDKKGNCITICNMENMDPVGVHTGDSIVAAPSQTLTNQEHQMLRQAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     F  DP S   + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LKIIGELQIEGGCNIQFALDPHSNDYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 96/296 (32%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           S  +   AL+D G++   I+                         V  V+A  KP     
Sbjct: 609 SVHSVM-ALKDLGYESLIINNNPETVSTDFNISDRLYFEPLFTEDVNSVIAQEKPQGVIT 667

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +       +  E+  T    +  A + DK            P   +    + 
Sbjct: 668 QFGGQTAVNLARPLANDGAEVLGTSVSDMDRAENRDKFDQLLNKLGIDRPKGKTATSTKE 727

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
             +    +  P V++P        + V+   + +   +  +   +    +LI+Q++ G+E
Sbjct: 728 AKEIADELGYPLVVRPSYVLGGRAMEVVYTPEDLETYMTWAVEVSPEYPVLIDQFLQGME 787

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAH 235
           +    + D    +     P    +       S +S  + PAK   +I ++          
Sbjct: 788 IEIDAVCDGQDVII----PGIMEHIERAGVHSGDSMAMFPAKSLDEITRDKIVSYTEALA 843

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           + +  +GI    ++    + KV+ +E+N +   T     P ++   G    ++   
Sbjct: 844 KGLNIKGIINIQYVV--YNGKVYVIEVNPRASRT----VPFISKITGIPMVKIATK 893


>gi|310659729|ref|YP_003937450.1| carbamoyl-phosphate synthase large subunit [Clostridium sticklandii
           DSM 519]
 gi|308826507|emb|CBH22545.1| carbamoyl-phosphate synthase large subunit [Clostridium
           sticklandii]
          Length = 1067

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ + +                     V  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLINSNPATIMTDAEAADKIYIEPITLDYVKKIIELERPDSLLP 88

Query: 57  VLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G    +    +     L        G     +   + R         +         
Sbjct: 89  GMGGQTALNMALELHDQGILDSYNIKIIGTSIDGIKQGEDRYLFKELMNRIGEPMIQSEI 148

Query: 115 R----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++P       G  + + +  + L +    S++   Q+LIE+
Sbjct: 149 FTELEAGINYASQIGYPVIVRPAYTLGGTGGGIAETEDQLRLIMKSGLSYSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +  +I+V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIKGW-KEIEYEVMRDANGNKISVCNMENFDPVGIHTGDSIVVAPSQTLSDKDYQMLRTS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +AIG  G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIEAIGIEGGCNVQFALNPDSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 93/293 (31%), Gaps = 34/293 (11%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C   L   G +   I+ +                       V  V+   KPD       G
Sbjct: 580 CVKVLRKMGIETIIINSNPETVSTDFSIADKLYFEPLSEEDVLSVIDKEKPDGVILQFGG 639

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTM 118
                  +   +    IP   +      LS D+ +  + + S  +       I      +
Sbjct: 640 Q--TAIKLADFISSKGIPIYGTSASQIDLSEDREKFDEFLESLDIKRPKGKAIFNLEDGI 697

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + + +  P +++P       G+ +   +  +   L  +   +  + +LI+QY+ G EL 
Sbjct: 698 KTANELGYPLLVRPSYVLGGQGMKICYAESELTEYLSNAFKKDDKNPVLIDQYIVGKELE 757

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +           + T   P  +   I +++  +      A+
Sbjct: 758 VDAICDGDSVLLPGIMEHIERAGIHSG---DSMTVYPPQNVSSHIIEQITEVTRKIALAL 814

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             +G+    ++      +++ +E+N +   T     P ++  +     EL   
Sbjct: 815 NVKGLINIQYI--AYEEQLYVIEVNPRASRT----VPYISKVSNVPIVELATR 861


>gi|309810682|ref|ZP_07704490.1| carbamoyl-phosphate synthase, large subunit [Dermacoccus sp.
           Ellin185]
 gi|308435313|gb|EFP59137.1| carbamoyl-phosphate synthase, large subunit [Dermacoccus sp.
           Ellin185]
          Length = 1102

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGLRVILVNSNPATIMTDPETADVTYVEPITPEIVESIIAKERPDAVLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE    P   + + A  L  D+ + K VV  CG     S +
Sbjct: 89  TLGGQTALNTAIALHKNGVLEKYGCPLIGANVEAIELGEDREKFKGVVERCGAESAKSHI 148

Query: 113 VNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +   +  P V++P      LG      +  +          +   ++L+E+
Sbjct: 149 CHTMDEVLAAADDLGYPVVVRPSFTMGGLGSGFAYDETDLRRMAGAGLQASPVTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   ++D   +     +F    +      +          +  +     
Sbjct: 209 SILGWKEYELEVMRDNVDNVVVVCSIENFDPMGVHTGDSITVAPALTLTDREYQRMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAINPADGRMIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            M
Sbjct: 325 KM 326


>gi|257464131|ref|ZP_05628513.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp. D12]
 gi|317061647|ref|ZP_07926132.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp.
           D12]
 gi|313687323|gb|EFS24158.1| carbamoyl-phosphate synthase,pyrimidine-specific [Fusobacterium sp.
           D12]
          Length = 1069

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 90/279 (32%), Gaps = 33/279 (11%)

Query: 24  SALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNF 62
             L+  G +   I+                     V   +  ++   KP+       G  
Sbjct: 581 KTLKKLGIESIIINNNPETVSTDFSTGDKLYFEPLVTEDIMNIIDKEKPEGVILQFGGQT 640

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
                       ++I  T +  +  A   +K            P   +       +    
Sbjct: 641 AIKLAKDLEKRNVKILGTGAEKIDEAEDREKFEEMMENLDIKRPKGRASWDVEHGIAIAK 700

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL    +
Sbjct: 701 EVGYPVLVRPSYVLGGQGMEICHDEINLIKYLEASFSRDASSPVLIDKYLNGIELEVDAI 760

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
            D    +     P    +       S +S  + P +       +++  +     +A+  +
Sbjct: 761 CDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYPGTEEQILEITTKIARALEVK 816

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
           G+    F+      +++ +E+N       P ++ +S  P
Sbjct: 817 GMMNIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 853



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 92/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                       V  V+   +PD    
Sbjct: 28  SGTQACETLKKEGIEVVLINSNPATIMTDKAIADRIYIEPITFEFVVKVIEKERPDSIIA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +       + ILE   I    + I +     D+   R         +     
Sbjct: 88  GMGGQTALNMAVELSEKGILEKYGIKVIGTSIESIKRGEDRELFREAMEKIGEPILKSHV 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +          + I  P V++P       G       Q +   LL+  S +   Q+LIE+
Sbjct: 148 VESLEEGYKIANEIGYPVVVRPAYTLGGTGGGFAHNPQELEEILLKGLSLSRVGQVLIER 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
            + G                      +      +   + +S  V P++   D  Y+ ++R
Sbjct: 208 SILG--WKEIEYEVIRDANGNAITVCNMENIDPVGIHTGDSIVVAPSQTLTDREYQMLRR 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + IG  G     F   P S +   +EIN  P ++  S     +   GY    + 
Sbjct: 266 ASLKIVEEIGIVGGCNVQFALHPKSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVA 321

Query: 290 LWM 292
             +
Sbjct: 322 TKL 324


>gi|110598072|ref|ZP_01386351.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340331|gb|EAT58825.1| conserved hypothetical protein, conserved [Chlorobium ferrooxidans
           DSM 13031]
          Length = 489

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 31/296 (10%)

Query: 29  AGFKVSQIDVDRSVGLV----LAHLKPDLAFNVLHGNF---GEDGLVQAILELLEIPYTH 81
            G  V   D+ ++  +     L     DL  N+  G+F        V   LE    P+T 
Sbjct: 31  EGHDVEMADIHKATAVQQVRSLIQQDFDLFINLCDGSFDSDCAGIEVVQTLEYFNAPFTG 90

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG-GSSLG 140
           +       + + M+          P+   ++      ++   +  P ++K      S   
Sbjct: 91  ASSDFYDPTREDMKRVARSFGIDTPLHRFVVTEADIKEAAENLRFPLIVKHPNSYASIGM 150

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC-------GVMGDASLDVTEIA 193
               + +      +          + L+E++V+G E T              +    E  
Sbjct: 151 TKTSRTETPEAFKVEAERIVREFGEALVEEFVEGREFTVLVAENAEDAANPVAFPAVEFV 210

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
            P+ + + +     S             D+ + ++ ++      +   G  R D   D  
Sbjct: 211 FPEGESFKHFDLKWSDYEDMNCIPVEDPDLDRRLRTISAQLFTGLNGSGYGRCDIRMDGE 270

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAG------YSFRE---LLLWMVEDASCLR 300
             ++F LEIN   G             AG       ++ +     L ++ +A+  R
Sbjct: 271 -GRLFMLEINPNCG------VFYSPDDAGSADFILLNYPDGHQEFLRLLREAATKR 319


>gi|42522430|ref|NP_967810.1| carbamoyl-phosphate synthase [Bdellovibrio bacteriovorus HD100]
 gi|39574962|emb|CAE78803.1| carbamoyl-phosphate synthase [Bdellovibrio bacteriovorus HD100]
          Length = 1064

 Score = 58.7 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/313 (11%), Positives = 88/313 (28%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G +V  ++ + +                     +  ++A   PD    
Sbjct: 29  SGTQACKALMKEGLEVILVNSNPATIMTDPEIATRVYVEPLKVDYLEKIIAKEMPDAVIP 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +            +++      ++ +    +  R          P    
Sbjct: 89  TLGGQTALNLALDLHAKGILQKYKVQLLGATPQVIKAGEDREIFRGLLDKIGAKYPKSHL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +     +  P +++P       G  +    +     L+ +   +   ++L+E+
Sbjct: 149 IRTYEHGLQIADELGYPMILRPNYTLGGGGGGIAYSPEEYKKMLVTALHESPTSEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +         +     +     +      +          +        
Sbjct: 209 SILGWKEYELEVMRDHKGTFVVVCSIENLDPCGVHTGDSITVAPQQTLSDREYQSMRDEA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             + ++     G +   F   P +++   +E+N  P ++  S            ++AA  
Sbjct: 269 CKIINEVGIETGGANIQFAVHPTTKERVVIEMN--PRVSRSSALASKATGFPIAKIAALL 326

Query: 280 YAGYSFRELLLWM 292
             GYS  EL   +
Sbjct: 327 AIGYSLDELQNDI 339



 Score = 39.5 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 52/163 (31%), Gaps = 7/163 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P + +P        + VI+  + +     +   +   ++  +        L   V    
Sbjct: 698 YPMICRPSYVLGGRRMEVIENTEELLSYFQRHKDYISPEKPCLMDQFLAGALEVDVD-LV 756

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   +     +       +S  +   + P ++  +  + ++ L+      IG   I  
Sbjct: 757 RGEDWVVVGGIVEHIEAAGVHSGDSMGVLPPHRLKPETCERIEDLSKQLANRIGV--IGH 814

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +      +  V+ LE N +   +  S  P +A   G    +L
Sbjct: 815 LNLQLAVKNDVVYMLEANPR---SSRS-VPFVAKATGIPLIDL 853


>gi|294011425|ref|YP_003544885.1| carbamoyl-phosphate synthase large chain [Sphingobium japonicum
           UT26S]
 gi|292674755|dbj|BAI96273.1| carbamoyl-phosphate synthase large chain [Sphingobium japonicum
           UT26S]
          Length = 1111

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +   A   + D+++ +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLDKYGVKMIGADAAAIDKAEDRLKFRDAMDKIGLESARSRI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P +I+P       G  V    +     + +    +   ++LIE+
Sbjct: 149 AHTMEEALEALEFTGLPSIIRPSFTLGGTGGGVAYNKEEFKRIVAEGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.077,   Method: Composition-based stats.
 Identities = 28/172 (16%), Positives = 64/172 (37%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
            + I  P +++P        + ++     +   +  +   +    +LI+QY  D +E+  
Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAVEVDV 799

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +   I  E++R A +  +A+ 
Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSDGIIAEIERQADVLARALS 856

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F        V+ +E+N +   T     P +A   G    ++   
Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902


>gi|50552496|ref|XP_503658.1| YALI0E07271p [Yarrowia lipolytica]
 gi|49649527|emb|CAG79240.1| YALI0E07271p [Yarrowia lipolytica]
          Length = 1820

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG  +G+  + K + +                    +++       
Sbjct: 765 AEKLEYPLMIKSTAGGGGIGLQKVDKPEDLKRAFETVKHQGKSFFGDDGVFMERFVENAR 824

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            L+  +       P    P +    + + + +  + + 
Sbjct: 825 HVEVQILGDGKGNALAIGERDCSLQRRNQKVVEETPAPNFPAETRTRMMKASEMLAKNLN 884

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
            RG    +F+FD    + ++LE+N
Sbjct: 885 YRGAGTVEFIFDEKRNEFYFLEVN 908


>gi|294628330|ref|ZP_06706890.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. e14]
 gi|292831663|gb|EFF90012.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. e14]
          Length = 1102

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 85/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+ + K VV      +     
Sbjct: 89  TLGGQTALNTAISLHDNGVLEKYGVELIGANVEAIHKGEDRDQFKLVVEEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   +          P V++P       G      ++ +        + +   
Sbjct: 149 ARSVICHTMDDVLQGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGTGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVDPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|323477569|gb|ADX82807.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           HVE10/4]
          Length = 1051

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++++  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEENLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    AV         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|323474829|gb|ADX85435.1| carbamoyl-phosphate synthase, large subunit [Sulfolobus islandicus
           REY15A]
          Length = 1051

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/297 (15%), Positives = 101/297 (34%), Gaps = 34/297 (11%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLVNSNVATVQTSKKFADKLYMLPVVWWAVEKVIEKERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V            +++  T    +  ALS +K R   + ++  VP   S
Sbjct: 87  GFGGQTALNVGVDLHKKGVLQKYGVKVLGTQIDGIEKALSREKFRETMIENNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P +++        G +V   ++++  ++ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEAIKNAKIVGYPVMVRVSFNLGGRGSMVAWTEENLKKNIRRALSQSYIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR- 229
           Y+                    AV         +   +  ST V P +   ++  +  R 
Sbjct: 207 YLY--HWIELEYEVMRDKKGNSAVIACIENLDPMGVHTGESTVVAPCQTLDNLEYQNMRT 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 ++I   G     F  +P   + + +E N  P M+  S     +   GY   
Sbjct: 265 YTIEVARSINLIGECNVQFALNPRGYEYYIIETN--PRMSRSS--ALASKATGYPLA 317


>gi|121713104|ref|XP_001274163.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus clavatus NRRL 1]
 gi|119402316|gb|EAW12737.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Aspergillus clavatus NRRL 1]
          Length = 712

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/238 (17%), Positives = 83/238 (34%), Gaps = 13/238 (5%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + +A  +   A +  +G   E+           + +      A     DK +S
Sbjct: 93  YLDGDRIIEIAKREGCQAIHPGYGFLSENSEFARKCTEAGLVFIGPPWKAIEDMGDKSQS 152

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+++++ GVP  P    +   ++        I  P +IK +KGG   G+ +         
Sbjct: 153 KKIMTAAGVPCVPGYHGSNQDVNFLEAEADKIKYPVLIKAVKGGGGKGMRIASSKAEFQA 212

Query: 153 DLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            L        +S+     L+ +       +   V  D   +   +            K  
Sbjct: 213 QLQSAKSEAMNSFGDDHVLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL 272

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +    LP     DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 273 EESPAPHLPDVTRKDIWAKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|21325531|dbj|BAC00153.1| Formate-dependent phosphoribosylglycinamide formyltransferase (GAR
           transformylase) [Corynebacterium glutamicum ATCC 13032]
          Length = 398

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    +  L    +PD     +
Sbjct: 17  GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +      L  I  T      +       +                       
Sbjct: 77  EALATDELVKIEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFEEFS 136

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIE 176
            +   +  P V+KP+   S  G  V++    +      + S       ++++E +V+   
Sbjct: 137 AAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVEFDY 196

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T              +          P ++     +  + +A     
Sbjct: 197 EITLLTVRSIDPTTSKPATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSVAARITN 256

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 257 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 284


>gi|19553952|ref|NP_601954.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|62391595|ref|YP_226997.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum ATCC 13032]
 gi|145296758|ref|YP_001139579.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           glutamicum R]
 gi|172044397|sp|A4QHG1|PURT_CORGB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172045811|sp|Q8NM23|PURT_CORGL RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|41326937|emb|CAF20781.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE [Corynebacterium
           glutamicum ATCC 13032]
 gi|140846678|dbj|BAF55677.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 408

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    +  L    +PD     +
Sbjct: 27  GKEVAIAFQRLGLEVHAVDRYEHAPAHQVAHFSYVIDMTDAAQVRELVERVRPDFVIPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +      L  I  T      +       +                       
Sbjct: 87  EALATDELVKIEEEGLATIVPTARAAKLTMNREGIRKLAAEELGLPTSNYEFCSTFEEFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIE 176
            +   +  P V+KP+   S  G  V++    +      + S       ++++E +V+   
Sbjct: 147 AAAEKLGYPNVVKPVMSSSGKGQSVLRSSDDLQAAWDYAMSGARVANSRVIVEAFVEFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T              +          P ++     +  + +A     
Sbjct: 207 EITLLTVRSIDPTTSKPATWFCEPIGHRQEDGDYVESWQPMEMTPRALENARSVAARITN 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 294


>gi|332885232|gb|EGK05483.1| carbamoyl-phosphate synthase, large subunit [Dysgonomonas mossii
           DSM 22836]
          Length = 1074

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KPD    
Sbjct: 29  SGSQALKALKEEGIETVLINPNIATVQTSEGSADKIYFLPITPYFVEKVIKKEKPDGILL 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G     + ILE   +    + + A   + D+    + +    V      +
Sbjct: 89  AFGGQTALNCGVQLFQEGILEKYNLRVLGTPVQAIMDTEDRELFVKKLDQIDVKTIKSHA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +I+       LG      +Q +    L   ++++  Q+L+E+
Sbjct: 149 VGTIEDAVKAAKDLGYPIIIRAAYALGGLGSGFCDNEQELRA--LAEKAFSYSSQILVEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +  D + +++ L
Sbjct: 207 SLKGW-KEIEYEVVRDKYGNCMTVCNMENFDPLGIHTGESIVVAPSQTLTNDEFHKLREL 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     F FD  S     +E+N +  ++  S     +   GY   
Sbjct: 266 SIRIVKHIGIVGECNVQFAFDTESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 317


>gi|294341844|emb|CAZ90273.1| Urea carboxylase [Thiomonas sp. 3As]
          Length = 1209

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +I  +  +     +       +      Y++       
Sbjct: 147 ARRIGFPVMLKSTAGGGGIGMQLIWSEDQLDAAYARVDRLARANFKEAGIYLEKYVQAAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++  +       PA    D +   +   A    Q + 
Sbjct: 207 HIEVQVFGDGAGGVVHLGERDCSVQRRNQKVIEETPAPHLADAVRTALCDTAVRLAQGVQ 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVED 295
            R     +F+ D  S   ++LE+N             +    G S      +L+ WMV  
Sbjct: 267 YRNAGTVEFVLDAESGAFYFLEVNT-----------RLQVEHGVSEEVSGVDLVEWMVRL 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|116515031|ref|YP_802660.1| hypothetical protein BCc_090 [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256885|gb|ABJ90567.1| carbamoyl-phosphate synthase large chain [Buchnera aphidicola str.
           Cc (Cinara cedri)]
          Length = 1072

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL++ G++V  I         D + +    +               KP+    
Sbjct: 29  SGAQACKALKEEGYQVILINSNPATIMTDPEIADFTYIEPINTKIILKIIKKEKPNAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L +      G     +   + RS    S   + +  +    
Sbjct: 89  TMGGQTALNCTLQLYKKGILDKYNIEIIGTTIKCIKKAENRSLFEKSMKKIKLKTAKCGI 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              ++  + I      P +++P       G  +    +      +     +   +LLI++
Sbjct: 149 AHNIEEANSIIKSIGFPCIVRPSFTMGGSGGGIAYNKEDFQNICILGLESSPISELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +         +     +     +      +          +  K     
Sbjct: 209 SLIGWKEYELEVITDQSGNFIVVCTIENIDPMGIHTGDSITVAPAQTLSDKEYQKMRNAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + K+  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INILKEIGVTNGGSNVQFAINPKNGKMIVIEMN--PRVSRSS--ALASKATGFPIAKIST 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 37.2 bits (84), Expect = 3.1,   Method: Composition-based stats.
 Identities = 35/286 (12%), Positives = 94/286 (32%), Gaps = 24/286 (8%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S++ ++S           +   F+   +     +  ++   KP        G        
Sbjct: 611 STDYDIS-----------DRLYFEPISL---EEILEIVRIEKPLGIVIQFGGQTPLKLAK 656

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
               E ++I  T    +  A +  K +          P        +  +   + I  P 
Sbjct: 657 YFKKEGIKILGTQPKFIDQAENRKKFQKIIHKLKIKQPKNDIATNIKEALIKSNYIGYPI 716

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASL 187
           +++P        + +IK D+ +    L  +  +    +LI+QY+D   E+    + D   
Sbjct: 717 IVRPSYVLGGREMKIIKNDKELIKYFLNLNIQSKKKTILIDQYLDNATEIDVDAVCDLKN 776

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                 +   +           ++  +    +   + K++++   +    +  +G+    
Sbjct: 777 VFIGGIMEHVEPAGIHSG---DSACTLPVYTVSQQLLKKIKKQTKILSIKLNVQGLINIQ 833

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           F     ++K++ LE N +   T     P ++        ++ + ++
Sbjct: 834 FAI--KNKKLYILEANPRASRT----IPFISKAIQVPLAKVAMRVI 873


>gi|116670809|ref|YP_831742.1| carbamoyl phosphate synthase large subunit [Arthrobacter sp. FB24]
 gi|166989831|sp|A0JX72|CARB_ARTS2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116610918|gb|ABK03642.1| carbamoyl-phosphate synthase large subunit [Arthrobacter sp. FB24]
          Length = 1099

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 98/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +LE   +    + I A  L  D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALDKNGVLEKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      + +   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 IHSMDEALKAAEDLGYPMVVRPSFTMGGLGSGLAYTEDDLRRIVGQGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +  +     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPALTLTDREYQRLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|330832726|ref|YP_004401551.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3]
 gi|329306949|gb|AEB81365.1| carbamoyl phosphate synthase large subunit [Streptococcus suis ST3]
          Length = 1081

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 601 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPKGVIVQFGGQT 660

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 661 AINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAAR 720

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 721 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAI 780

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   +          + C G
Sbjct: 781 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIG 837

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 838 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 882



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 52  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 111

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 112 LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 171

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 172 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 231

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 232 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 290

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        D  S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 291 LSIIRALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 346

Query: 292 M 292
           +
Sbjct: 347 I 347


>gi|255102803|ref|ZP_05331780.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-63q42]
          Length = 774

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   KPD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKEKPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|223934161|ref|ZP_03626102.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           89/1591]
 gi|302023698|ref|ZP_07248909.1| carbamoyl phosphate synthase large subunit [Streptococcus suis
           05HAS68]
 gi|223897167|gb|EEF63587.1| carbamoyl-phosphate synthase, large subunit [Streptococcus suis
           89/1591]
          Length = 1059

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 86/291 (29%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   KP        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPKGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   D             P   +       +++  
Sbjct: 639 AINLAEPLAKAGIPILGTQVADLDRAEDRDLFEKALKDLGIPQPPGQTATNEEEALEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ ++ +   +  +   +    +L++ Y+ G E     +
Sbjct: 699 KIGFPVLVRPSYVLGGRAMEIVENEEDLRSYMRTAVKASPEHPVLVDSYIVGRECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +  ++   +          + C G
Sbjct: 759 SDGKDVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSKEVQATIADYTKRLAIGLDCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--KDETVYVIEVNPRASRT----VPFLSKVTDIPMAQVATKLI 860



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G+ V  ++        D+ +                +L   +PD     
Sbjct: 30  GTQACLALKEEGYSVVLVNSNPATIMTDKEIADKVYIEPITLEFVTRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +      E+  T    +  A   D  +      +  +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILDELGVELLGTKLSAIDQAEDRDLFKQLMEDLNQPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +          +   Q LIE+ 
Sbjct: 150 TTVDEALEFAAEIGYPVIVRPAFTLGGTGGGMCANEEELREIAENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCNMENFDPVGIHTGDSIVFAPTQTLSDIE-NQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        D  S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LSIIRALKIEGGCNVQLALDSHSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|68074917|ref|XP_679375.1| carbamoyl phosphate synthetase [Plasmodium berghei strain ANKA]
 gi|56500108|emb|CAH93932.1| carbamoyl phosphate synthetase, putative [Plasmodium berghei]
          Length = 2151

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 96/308 (31%), Gaps = 32/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53
            G S E +    S   C   +     K   I         D D S  L    +  ++    
Sbjct: 1629 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1685

Query: 54   --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                          G    + +       + I  + +  +    + +K            
Sbjct: 1686 HNFEKSQGVIIAFGGQTSNNLVFSLYKNNVNILGSSAKSVDCCENRNKFSHLCDSLKIDQ 1745

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           +   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1746 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNSFEELKNFLMKAAIVSKDNP 1805

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 1806 VVISKFIENAKEIEIDCVSKNGKMINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 1863

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    + +   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 1864 KIKKISEKISKYLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 1917

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 1918 IDLATRIL 1925



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 84/295 (28%), Gaps = 32/295 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD--------------------RSVGLVLAHLKPDLAFNV 57
           SG     +L++ G  V  +                         V  ++   KPD     
Sbjct: 630 SGTQAIKSLKECGIYVILVPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILCT 689

Query: 58  LHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPSI 111
             G            + +L+        + + +  ++ ++    + +      +    S 
Sbjct: 690 FGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGSA 749

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++       L    I  ++ +     +       +++ I++ 
Sbjct: 750 KNVEEAVEVANKIGYPILVRTTFSLGGLNSSFINNEEELVEK-CKEIFLQTDNEIFIDKS 808

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 IA+   +       ++  +        +    Y + + +A
Sbjct: 809 LKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREIA 867

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 868 LKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 918


>gi|284929083|ref|YP_003421605.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A]
 gi|284809542|gb|ADB95247.1| carbamoyl-phosphate synthase large subunit [cyanobacterium UCYN-A]
          Length = 1081

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 98/303 (32%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  +         D + S            V  ++A  +PD    
Sbjct: 29  SGTQACKALREEGYEVILVNSNPASIMTDPEMSDRTYIEPLVPDIVEKIIAKERPDALLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D+   K+ + S GVPVCPS +
Sbjct: 89  TMGGQTALNIAVSLAKSGVLEKYNVELIGARLSAIEKAEDRELFKKAMDSIGVPVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N      +  I+    P +I+P       G  +    +     +      +   Q+L+E
Sbjct: 149 ANTLKEAREIAINIGSYPLIIRPAFTLGGTGGGIAYHQEEFEDIVQTGLDASPMSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +F    +      +          +  K    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENFDPMGVHTGDSITVAPAQTLTDKEYQKLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G +   F  +P +     +E+N  P ++  S     +   G+   +  
Sbjct: 269 SKSIIREIGVETGGANIQFSVNPANGDTIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 42.6 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 88/298 (29%), Gaps = 36/298 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF- 62
           AL   G++   +         D D              +  ++    P+       G   
Sbjct: 587 ALSQDGYETIMVNSNPETVSTDYDTSDRLYFEPLTREDILNIIEVENPEGVIIQFGGQTP 646

Query: 63  -GEDGLVQAILELLEIPYTHSGI----LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                 +Q   +                +  L+ D+ R ++++    +   P  +   F 
Sbjct: 647 LKLAVPLQEYFDNPSSCVQTKIWGTPPDSIDLAEDRERFEKILCDLQIKKPPGGIARSFE 706

Query: 118 MD--SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P V++P        + ++  D+ +   +  +        +LI+++++  
Sbjct: 707 QSLSIASNIGYPVVVRPSYVLGGRAMRIVYSDKELKHYMDYAIQVEPDHPILIDKFLE-D 765

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V          +     +       +S  ++  +    +   +   +++      
Sbjct: 766 AVEVDVDALCDKTGMVVIGGIMEHIEQAGVHSGDSACSIPFTTLSEKVLDIIRKWTSQLA 825

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++   G+    +       +V+ LE N +   T     P ++   G    ++   ++
Sbjct: 826 NSLQVIGLINIQYAVQQE--EVYILEANPRASRT----VPYVSKATGRPLAKIASLVI 877


>gi|257464968|ref|ZP_05629339.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           202]
 gi|257450628|gb|EEV24671.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           202]
          Length = 393

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 84/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYCVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEDFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  +IK  + I             D         G  + 
Sbjct: 143 SAIKEIGIPCVVKPIMSSSGHGQSIIKSAEQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V      S+                  P  +     ++ Q +A  
Sbjct: 194 VEGFIQFDYEITQLTVRHIHGTSFLAPIGHIQIDGDYRESWQPQVMSEKAQQKAQEVAEK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITSALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMISQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|257460269|ref|ZP_05625372.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis
           RM3268]
 gi|257442334|gb|EEV17474.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter gracilis
           RM3268]
          Length = 445

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/260 (19%), Positives = 88/260 (33%), Gaps = 25/260 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E      I     I +    + A  L  DK ++KQV+   G+PV P  
Sbjct: 78  DAIFPG-YGFLSESQNFVEICAKHGIKFIGPSVEAMTLMSDKSKAKQVMMRAGIPVVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I            I  P +IK   GG   G+ V+++++ I      + S        
Sbjct: 137 DGAIASVEEARKLAAEIGYPVIIKAAAGGGGRGMRVVEREEDIEKLFWSAESEAMSAFGD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
              Y++        +    L      V         ++          PA I  +   K 
Sbjct: 197 GTMYMEKYITNPRHIEVQVLGDEHGHVVHIGERDCSMQRRHQKLIEESPAVILDEPTRKS 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280
           +   A  A +AIG       +FL+D   +K +++E+N +              +      
Sbjct: 257 LHETAVRAAKAIGYASAGTFEFLYDGKDKKFYFIEMNTR----------LQVEHTVSEMR 306

Query: 281 AGYSFRELLLWMVEDASCLR 300
           +G    +L+ WM+  A   +
Sbjct: 307 SGL---DLIEWMIRIAQGEK 323


>gi|300778662|ref|ZP_07088520.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Chryseobacterium gleum ATCC 35910]
 gi|300504172|gb|EFK35312.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Chryseobacterium gleum ATCC 35910]
          Length = 1060

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 32/279 (11%), Positives = 84/279 (30%), Gaps = 31/279 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+++ G++   I+ +                       V  ++   KP        G   
Sbjct: 582 AIKEMGYEAIIINNNPETVSTDFSISDKLYFEPLTEEDVMNIIELEKPKGVVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     ++I  T    L  A + DK            P   +       +   + 
Sbjct: 642 INLADKLASHGVQILGTSLEDLDRAENRDKFEKALQELGIPQPKGRTSTSKEEAIKIANE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   +  +   +    +L+++Y+ G E+    + 
Sbjct: 702 IGYPVLVRPSYVLGGRAMEIVYAESELAHYMEHAVDASPEHPVLVDKYMVGKEIEVDAIC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  I       +        + +   G+
Sbjct: 762 DGETVVIPGIMEHIERAG---VHSGDSIAVYPPQNISQIEIDTLVDYTKRLAKGLNVIGL 818

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               ++       V+ +E+N       P ++ ++  P  
Sbjct: 819 MNIQYVLFE--GNVYVIEVNPRSSRTVPFLSKITDVPMA 855



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     +L++ G+KV  I+ + +                     V  ++   +PD     
Sbjct: 30  GTQACLSLKEEGYKVILINSNPATIMTDVEIADKVYIEPISLQFVSHIIRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           +E+  T    +  A   D  R      +  VP    +
Sbjct: 90  LGGQTGLNMAVELEKSGILEECKVEVLGTKLSAINRAEDRDLFRELMRELNEPVPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +   +  +          +   Q LIE+ 
Sbjct: 150 NTVEGALAFADEIGYPVIVRPAFTMGGTGGGIASTEAELKEIAELGLKHSPVTQCLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IAG-FKEIEYEVMRDANDNAIVVCNMENIDPVGVHTGDSIVVAPSQTLSDREYQLLRNAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALGIEGGCNVQLALDPHSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|192360305|ref|YP_001981735.1| urea amidolyase [Cellvibrio japonicus Ueda107]
 gi|190686470|gb|ACE84148.1| urea amidolyase [Cellvibrio japonicus Ueda107]
          Length = 1212

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 93/313 (29%), Gaps = 49/313 (15%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLA---------------HLKPDLAFNVL------ 58
            A  L+  G +   +  D DR+   V A               +LK DL           
Sbjct: 17  IAKTLKKMGIESVAVYSDADRNSAHVTACDKAICLGGNTAAESYLKVDLILAAAKETGAQ 76

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
                +G   E+       E   I +             K  S+++    GVP+ P    
Sbjct: 77  AIIPGYGFLSENANFCEKCEAEGIAFCGPTPEQIRQFGLKHTSRELAEQAGVPLTPGTGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P ++K   GG  +G+     +  +                    
Sbjct: 137 LGSVEEATHAAATLGYPVMLKSTAGGGGIGLTRCNSEAELVNAYESVKRLGQNFFSDSGV 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
           +++        +        +  V         L+  +       PA   P    +++  
Sbjct: 197 FLERFVDNARHVEVQIFGDGKGNVLALGERDCSLQRRNQKVVEETPAPNLPAATREQLLA 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            +    + +  R     ++++DP   + ++LE+N       P +T         A  G  
Sbjct: 257 ASVSLGKMVNYRSAGTIEYIYDPARDEFYFLEVNTRLQVEHP-ITE--------ACTGV- 306

Query: 285 FRELLLWMVEDAS 297
             +L+ WM+  A+
Sbjct: 307 --DLVEWMILTAA 317


>gi|158426026|ref|YP_001527318.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571]
 gi|158332915|dbj|BAF90400.1| allophanate hydrolase subunit 2 [Azorhizobium caulinodans ORS 571]
          Length = 1176

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 61/183 (33%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              IS P ++K   GG  +G+ +    Q +     +              Y++       
Sbjct: 147 AEAISYPVMLKSTAGGGGIGMQLCADAQELAAAFERVQRTARASFGDARVYLERFVAEAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA +  D +   +   A    +++G
Sbjct: 207 HVEVQIFGNGQGRVVALGERDCSLQRRNQKVIEETPAPLLPDAVRTRLHAAAVALGESVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP   + ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPAREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|282880013|ref|ZP_06288735.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS
           5C-B1]
 gi|281306127|gb|EFA98165.1| hypothetical protein HMPREF9019_0944 [Prevotella timonensis CRIS
           5C-B1]
          Length = 285

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 51/286 (17%), Positives = 100/286 (34%), Gaps = 18/286 (6%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
           VS  +      AL     +  ++         L+ L  D    ++      DG V+  + 
Sbjct: 15  VSKRNTLFITEALGKENVRFHKL----QNPDDLSELGIDNDDILI--AETRDGFVRYAIS 68

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
           +L    T        L+ +K   K  +   G+     I +       ++       +KP+
Sbjct: 69  MLGCRNTVESDRTIVLTQNKEYVKHELQRYGILSPCKITIEEVKDGCKY------FVKPV 122

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            G  S  + V    QS      +       G   +IE+++DG E T  ++       T  
Sbjct: 123 FGEDSNFVGVDSVCQSKEEAWRKADEIQKAGFTPMIEEFIDGEEYTVALIRKEGKIETY- 181

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
             P            +  +              E++ +A  A + +GC+   R DF  D 
Sbjct: 182 --PIKVHLFTPWNIMTHTAKFSEEEICEAVNDAELEDIAKKAFEVVGCKHYMRIDFRRDS 239

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDAS 297
              + + ++ N+ PG+ P   F +    +   S+ ++L  ++E A+
Sbjct: 240 Q-GRYYLIDFNLFPGLGPTDHFAKCINLHLNISYHDILTKIIETAT 284


>gi|255036238|ref|YP_003086859.1| carbamoyl phosphate synthase large subunit [Dyadobacter fermentans
           DSM 18053]
 gi|254948994|gb|ACT93694.1| carbamoyl-phosphate synthase, large subunit [Dyadobacter fermentans
           DSM 18053]
          Length = 947

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 93/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLK-----P 51
           SG   A +L + G +V  I         D              + +  +L   K      
Sbjct: 29  SGSQAARSLREEGIEVVLINSNPATIMTDPISADHVYLLPLEKKYIVEILEKHKAMGRPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     + G    +  +        +  ++      I A   + D+ + +  +   GV V
Sbjct: 89  DAVLPTMGGQTALNLAIDCDKAGIWKKYDVDIIGVDIKAIETTEDREKFRLKMLELGVNV 148

Query: 108 CPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           C            +    I  P VI+P       G   + K++     L      +   +
Sbjct: 149 CQGRTARSFLEGKEIAQEIGFPLVIRPSFTLGGTGGGFVDKEEDFDKALNYGLHASPVHE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+EQ V G +     +   S     I     +F    +      +             +
Sbjct: 209 VLVEQSVMGWKEYELELLRDSKGNFIIICSIENFDPMGVHTGDSITVAPAMTLPDTLYQQ 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  + +      G     F  +P   K+  +EIN  P ++  S            +
Sbjct: 269 MRDLAIKMMNGIGKFAGGCNVQFSVNPADDKIIAIEIN--PRVSRSSALASKATGYPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY   EL+  +
Sbjct: 327 IAAKMAIGYDLDELINPI 344



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 90/295 (30%), Gaps = 32/295 (10%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A ++AG++   +         D D              V  ++ H KP+     L
Sbjct: 590 HGVLAA-KEAGYETIMVNCNPETVSTDPDISDKLYFEPVFWEHVFDIIEHEKPEGVIVQL 648

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A    +  S         P   ++  +   +
Sbjct: 649 GGQTALKMAEKLEKYGIKIIGTDFHSLDWAEDRGRFSSLLEELGIPFPKFGTVRSSDAAV 708

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-EL 177
           +    +  P +++P        + ++  ++ +   +++       + +L++ +++G  E 
Sbjct: 709 ELSRSLGFPLLVRPSYVLGGQSMKIVINEKELEQHVVKILHDIPDNNILLDHFLEGALEA 768

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           +   + P  +  D  ++++        A
Sbjct: 769 EADAICDGEDAYIIGVMEHIEPAGIHSG---DSHAALPPFDLTADEIRQIEEHTRKIALA 825

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +G+    F        V+ +E N +   T     P +       +      +
Sbjct: 826 MNVKGLINVQFAV--KDGVVYVIEANPRASRT----VPFICKAYQEPYVNFATKL 874


>gi|149204195|ref|ZP_01881163.1| pyruvate carboxylase [Roseovarius sp. TM1035]
 gi|149142637|gb|EDM30682.1| pyruvate carboxylase [Roseovarius sp. TM1035]
          Length = 1167

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+ +  +   + +            E Y++ + L   
Sbjct: 172 AKAIGYPLMLKASWGGGGRGMRPIEDESELEDKVREGRREAEAAFGNGEGYLEKMILRAR 231

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +    L      +         ++  +       PA    +  +E      +   + + 
Sbjct: 232 HVEVQILGDKHGNMYHLFERDCSVQRRNQKVVERAPAPYLSETQREEICQLGYKICKHVN 291

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 292 YECAGTVEFLMDMDTGKFYFIEVNPR 317


>gi|325972752|ref|YP_004248943.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy]
 gi|324027990|gb|ADY14749.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta sp. Buddy]
          Length = 1069

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 109/314 (34%), Gaps = 42/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  +    +PD    
Sbjct: 29  SGTQAVKALKEEGYEVILLNPNPATVMTTPSLADTVYLDPLKIEYVEQIFQRERPDAILT 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    S I +  L+ D+   KQVV S G+    S +
Sbjct: 89  TMGGQSGLNLALELDKAGLLEQYGVEVIGSSITSIKLAEDRGAFKQVVQSLGLESAKSFV 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+              P +I+P      +G  +   +Q  P  L  +   +   + LIE+
Sbjct: 149 VHSLAEAQSLLQDFPYPRIIRPSYTLGGMGGSIANNEQEFPDLLCHALETSPTGEALIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +   +   +   +Y+ ++  
Sbjct: 209 SLIGWKEFEMEVMRDKADNAIIVCSIENIDPMGVHTGDSITIAPI-QTLDDKLYQTMRNA 267

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA 279
           +    +A+G   G S   F   P + ++  +E+N  P ++  S        FP     A 
Sbjct: 268 SIAILRAVGVDCGGSNVQFAVHPETARMVVIEMN--PRVSRSSALASKATCFPIARCSAK 325

Query: 280 -YAGYSFRELLLWM 292
              GY+  E++  +
Sbjct: 326 LAVGYTLDEVVNEI 339



 Score = 40.6 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 13/83 (15%)

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
             P K    I +++Q  A     A+  +G+    F        ++ +E+N +   T    
Sbjct: 789 FPPYKSSPQILQQMQEWAHKLAIALDTKGLMNIQF--AAKDGLLYLIEVNPRASRT---- 842

Query: 274 FPEMAAYAGYSFRELLLWMVEDA 296
            P ++  +G         ++E A
Sbjct: 843 VPFISKTSGVD-------LIETA 858


>gi|116512213|ref|YP_809429.1| carbamoyl phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris SK11]
 gi|122940114|sp|Q02YG5|CARB_LACLS RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116107867|gb|ABJ73007.1| carbamoyl-phosphate synthase large subunit [Lactococcus lactis
           subsp. cremoris SK11]
          Length = 1064

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTQACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     ILE L +    + + A   + D+   +      +  +      
Sbjct: 90  LGGQTGLNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVEEAINIADKIGYPIIVRPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIHALKIEGGCNVQLALDPNSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 80/267 (29%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P        G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIDLEEPLGVIVQFGGQTAINLAEPLSKAGVKILGTQVEDLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D             P   +       + + + I  P +I+P        + +I  
Sbjct: 663 RAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVLIRPSFVLGGRAMEIINN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVLLPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +   I   +          + C G+    F+      +V+ +E+N + 
Sbjct: 780 SGDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMNIQFVIYEE--QVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        +L   M+
Sbjct: 838 SRT----VPFLSKVTNIPMAQLATQMI 860


>gi|261855411|ref|YP_003262694.1| urea carboxylase [Halothiobacillus neapolitanus c2]
 gi|261835880|gb|ACX95647.1| urea carboxylase [Halothiobacillus neapolitanus c2]
          Length = 1208

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 59/182 (32%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +      +          +  +      +++       
Sbjct: 147 AERIGYPVMLKSTAGGGGIGMKLCWTADQLHEAYDSVERLSRSNFSQGGLFLEKYVEQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    QA+ 
Sbjct: 207 HIEVQIFGDGKGQVVSLGERDCSVQRRNQKVIEETPAPGLDESLRTELWGAATRLGQAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +     +F++D  +   ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 267 YQSAGTVEFVYDVKNAAFYFLEVNTRLQVEHGVTE--------RVTGV---DLVEWMVRV 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|37520527|ref|NP_923904.1| urea amidolyase [Gloeobacter violaceus PCC 7421]
 gi|35211521|dbj|BAC88899.1| gll0958 [Gloeobacter violaceus PCC 7421]
          Length = 1202

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 65/188 (34%), Gaps = 16/188 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P ++K   GG  +G+ + + +  +          +  +      Y++    
Sbjct: 144 HRQAAAIGYPVMLKSTAGGGGIGLALCRGEAKLTESFQAVQRLSENNFRDGGVYLEKYVE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        E  V         ++  +       PA    + + + +   A    +
Sbjct: 204 RARHLEVQIFGDGEGRVIALGERDCSIQRRNQKLLEETPAPGICETLRERLCEAAVCLGR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+G R     +F++D  +   ++LE+N +     G+T         A AG    +L+ WM
Sbjct: 264 AVGYRSAGTVEFIYDAEAADFYFLEVNTRLQVEHGVTE--------AVAGI---DLVEWM 312

Query: 293 VEDASCLR 300
           V  A+  R
Sbjct: 313 VRLAAGER 320


>gi|326798542|ref|YP_004316361.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp.
           21]
 gi|326549306|gb|ADZ77691.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium sp.
           21]
          Length = 938

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 97/302 (32%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  +L   + D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVIADHVYLLPLTVDSIEKILQERQIDAVLP 88

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  ++A    I E   +      + A   + ++   +Q++   GV V  S  
Sbjct: 89  TMGGQTALNLCIEASNRGIWEKYGVQVIGVDVAAIEKTENREAFRQLMIEIGVGVAKSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P       G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQQIGFPLVIRPSYTLGGTGGGFVHKKEDFEAALSRGLQASPTHEVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +             +   + 
Sbjct: 209 AVLGWKEYELELLRDNKDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDTCYQEMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  +P +  +  +EIN  P ++  S     +   GY   ++  
Sbjct: 269 IKMMRAIGNFAGGCNVQFSVNPENEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 11/265 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+     L G        +     + I  T    + 
Sbjct: 611 DKLYFEPVFW---EHVREIIDLEKPEGVIVQLGGQTALKMAEKLKETGIRIIGTSFEDMD 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P           +   + +  P +++P       G+ ++  
Sbjct: 668 LAEDRGRFSDLLKELDIPYPKYGVAENAEEALKVANEVGYPVLVRPSYVLGGQGMSIVIN 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   +++      G+++LI+ ++D              +   I             +
Sbjct: 728 DEELEKAVIKIMKNMPGNRVLIDHFLD-RAEEAESDSICDGEEVHIIGMMEHIEP-AGIH 785

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +   + +++   +    +A+  +G+    F       KV+ +E N + 
Sbjct: 786 SGDSSAVLPPFSLSTAVQEKMDEYSRKIAKALNVKGLLNIQFAI--KDGKVYVIEANPRA 843

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P +A      +  +   
Sbjct: 844 SRT----VPFIAKAYDVPYINIATK 864


>gi|294790943|ref|ZP_06756101.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata
           F0304]
 gi|294458840|gb|EFG27193.1| carbamoyl-phosphate synthase, large subunit [Scardovia inopinata
           F0304]
          Length = 1071

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 96/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G++V  I+ +                          V+   +PD    
Sbjct: 29  SGSQACQSLREEGYEVVLINSNPATIMTDASIADRVYIEPLTVDFAKRVIYKERPDAILG 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G + +V+      L+ + +    + + A   + D+   + +++     VP    
Sbjct: 89  TLGGQTGLNLVVELHQNGILDSMGVEILGTDLEAINKAEDRELFRSLMNDLGEPVPESDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G   +  ++ +          +   Q LIE+
Sbjct: 149 VHSVEAAVQFASQLGYPLVVRPAYTLGGTGGGFVHNEKELRHIADAGLKMSPVHQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +          +      +  + ++  
Sbjct: 209 SIAGFKEIEYEVMRDASDNAIVVCAMENIDPVGIHTGDSVVVAPVQTLTDRE-NQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLRIIRALKICGGCNVQLALDPQSFSYYVIEVN--PRVSRSS--ALASKATGYPIAKISA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 93/284 (32%), Gaps = 33/284 (11%)

Query: 22  CASALEDAGFKVSQID-------VDRSVGLVLAHLKP---DL--AFNVLH---------G 60
           C   L+  G++   I+        D S+   L        D+    N+ H         G
Sbjct: 577 CVETLKKEGYEAIVINNNPETVSTDFSISDKLYFEPLTTEDVMNVINLEHPLGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +         ++I  T    +  A    +  +         P   + +     +  
Sbjct: 637 QTAINIAASLQERGVKILGTSLKNIDKAEDRHEFETALQELGIPQPQGDTAVTVDQALVI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++  D  + + +       +H   +L+++YV G EL  
Sbjct: 697 ANQIGYPVLVRPSYVLGGRAMEIVHNDDELKVYMSTAVKEISHDAPILVDRYVVGKELET 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V P +I  D + + +   A    +  
Sbjct: 757 DAIADGENVYI----PGVMEHIERAGIHSGDSISVYPTQIISDQVKETIIDYAERIGRGF 812

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
              G+    F+ D  + KV+ LE+N       P ++ ++  P  
Sbjct: 813 HFIGLYNIQFIVD-KNNKVYVLEVNPRSSRTVPFLSKITSVPMS 855


>gi|166033410|ref|ZP_02236239.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC
           27755]
 gi|166026595|gb|EDR45352.1| hypothetical protein DORFOR_03136 [Dorea formicigenerans ATCC
           27755]
          Length = 1175

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 88/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPD---------------LAFN 56
                 AL + G     I        +          L PD               +A N
Sbjct: 46  AIRVFRALNELGIVTVSIYSKEDRYALFRSKADESYPLNPDKGPIDAYLDIDTIIKIALN 105

Query: 57  V----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK+ SKQ+  +  VP+ P
Sbjct: 106 AGVDAIHPGYGFLSENPEFVDACEQNGITFIGPSSDIMRAMGDKISSKQIAIAADVPIIP 165

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWN 161
            +     + +    I+     P ++K   GG   G+ ++       +       +S    
Sbjct: 166 GVDHAMKSYEEAAKIADMVGYPIMLKASNGGGGRGMRIVNDPADLEKEFNEARNESKKAF 225

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E+Y+ G   +   V+GD   +V  +            K         +P    
Sbjct: 226 GDDMIFVEKYLKGPKHIEVQVIGDNYGNVVHLFDRDCSVQRRHQKVVEYAPAFTIPD--- 282

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +++   A    + +G       +FL D      +++E+N +
Sbjct: 283 -ETREKIFDAAIRLCKNVGYVNAGTLEFLVD-RDNNPYFIEMNPR 325


>gi|119356367|ref|YP_911011.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353716|gb|ABL64587.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 492

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                    +    V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVVLVNSNPATIMTDIEMADATYIEPITPDYVRKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVTLAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGFF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEEIGLPIVIRPSFTLGGTGGGFAESKADYYDAVRRGLAESPISEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 CLVGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAIHPRTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|85373966|ref|YP_458028.1| carbamoyl phosphate synthase large subunit [Erythrobacter litoralis
           HTCC2594]
 gi|84787049|gb|ABC63231.1| carbamoyl-phosphate synthase large subunit [Erythrobacter litoralis
           HTCC2594]
          Length = 1109

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGTQAIKALREEGYRVVLVNSNPATIMTDPEMADATYVEPIVPEIVAKIIAKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L    +    +   A   + ++ R ++ + S G+    S +
Sbjct: 89  TMGGQTALNCALKLDEMGVLAEHGVEMIGAKADAIDKAENRQRFREAMDSIGLESARSGI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N      + L     P +I+P       G  +    Q     + +    +   ++LIE+
Sbjct: 149 ANTLEEAREVLKRTGLPSIIRPSFTLGGTGGGIAYNTQEFDRIVREGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFEMEVVRDRKDNAIIICAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRTAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+    +  
Sbjct: 269 INVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIARVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 66/172 (38%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P        + ++  +  +   +  + + +    +L++QY  D IE   
Sbjct: 741 AARIGYPVLLRPSYVLGGRAMEIVDSEAQLDDYIRTAVNVSGESPVLVDQYLRDAIECDV 800

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D         +   +       +S  ++  + P  +P +I +E++R A     A+ 
Sbjct: 801 DVISDGEEVRIAGVMQHIEEAG---VHSGDSACTLPPYSLPNEIIEEMERQAEALAIALK 857

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F       +V+ +E+N +   T     P +A   G    ++   
Sbjct: 858 VRGLMNVQFAV--KDGEVYLIEVNPRASRT----VPFVAKAIGRPIAKIASR 903


>gi|110597092|ref|ZP_01385381.1| Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           oligomerisation:Carbamoyl-phosphate synthetase large
           chain-like [Chlorobium ferrooxidans DSM 13031]
 gi|110341283|gb|EAT59748.1| Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           oligomerisation:Carbamoyl-phosphate synthetase large
           chain-like [Chlorobium ferrooxidans DSM 13031]
          Length = 492

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDVEFADATYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVALAESGILERNGVELIGAKLRAIRKAENREFFSDAMKKIGLEMAKGVF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   ++   I  P +I+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEEIGLPIIIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPISEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F    +      +             +     
Sbjct: 209 CLFGWKEYELEVIRDLADNVIIVCSIENFDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAIHPGNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|307295448|ref|ZP_07575284.1| carbamoyl-phosphate synthase, large subunit [Sphingobium
           chlorophenolicum L-1]
 gi|306878487|gb|EFN09707.1| carbamoyl-phosphate synthase, large subunit [Sphingobium
           chlorophenolicum L-1]
          Length = 1111

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRIILVNSNPATIMTDPEFADATYVEPITPEIVAKIIEKERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    +   A   + D+++ +  +   G+    S +
Sbjct: 89  TMGGQTALNTALALFNDGTLDKFGVKMIGADAAAIDKAEDRLKFRDAMDKIGLESARSRI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P +I+P       G  V    +     + +    +   ++LIE+
Sbjct: 149 AHTMEEALEALEFTGLPSIIRPSFTLGGTGGGVAYNKEEFKRIVAEGLDASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRNDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 30/172 (17%), Positives = 65/172 (37%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
            + I  P +++P        + ++     +   +  +   +    +LI+QY  D IE+  
Sbjct: 740 ANRIGYPVLMRPSYVLGGRAMEIVDGQAQLEEYIATAVQVSGDSPVLIDQYLRDAIEVDV 799

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +       +S  ++  + P  +  DI  E++R A +  +A+ 
Sbjct: 800 DALCDGDDVVVAGVLQHIEEAG---VHSGDSACSLPPYSLSDDIIAEIERQADVLARALS 856

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F        V+ +E+N +   T     P +A   G    ++   
Sbjct: 857 VRGLMNIQFAV--KDGVVYLIEVNPRASRT----VPFVAKAIGTPIAKIASR 902


>gi|296421031|ref|XP_002840070.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295636281|emb|CAZ84261.1| unnamed protein product [Tuber melanosporum]
          Length = 381

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 31/194 (15%), Positives = 64/194 (32%), Gaps = 25/194 (12%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---------HGDQLLIEQYV 172
           + +  P ++KP++G  S G+ +I    S+   L                 G++  +    
Sbjct: 165 YDLPYPVIVKPVRGRGSEGVQLIDGFVSMLDTLDDLFKTYDVLLIEEFLEGEEGTVTVVP 224

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DG      +            +P +             ++ VLP       ++  +    
Sbjct: 225 DGQGRFVALPIVQRFGQVAGVMPWNGHVP------VTTNSTVLPVGEEDLWHRAAKIECQ 278

Query: 233 LAHQAIGCRGISRSDFLF-DPLSRKVFWLEINVQPGMTPV---------SIFPEMAAYAG 282
            A + +    I+R D    D    K F  ++N +P +T           S+    A   G
Sbjct: 279 KAAELLKLTSITRIDIRRKDENGGKFFLFDVNPKPNLTGTGRPGRDSQDSLCAMAAREFG 338

Query: 283 YSFRELLLWMVEDA 296
           + +  L+   ++ A
Sbjct: 339 WEYPALVRKCIDAA 352


>gi|194333332|ref|YP_002015192.1| carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris
           aestuarii DSM 271]
 gi|194311150|gb|ACF45545.1| Carbamoyl-phosphate synthase L chain ATP-binding [Prosthecochloris
           aestuarii DSM 271]
          Length = 495

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDVEFAHSTYIEPITPEYVQKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V    + ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVALAERGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L  I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALESIGLPIVIRPSFTLGGTGGGFAETKADYYDAVRRGIAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +                   
Sbjct: 209 CLIGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLSDRQYQALRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VKIIREIGVETGGSNIQFAINPDNGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|238760098|ref|ZP_04621248.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
 gi|238701717|gb|EEP94284.1| D-alanine--D-alanine ligase [Yersinia aldovae ATCC 35236]
          Length = 36

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 17/34 (50%), Positives = 21/34 (61%)

Query: 6  GGISSEREVSLSSGKACASALEDAGFKVSQIDVD 39
          GG S+EREVSL SG+A  + L +AG     ID  
Sbjct: 3  GGTSAEREVSLLSGQAVLAGLREAGIDAYGIDTK 36


>gi|163840705|ref|YP_001625110.1| carbamoyl phosphate synthase large subunit [Renibacterium
           salmoninarum ATCC 33209]
 gi|189081832|sp|A9WSA8|CARB_RENSM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|162954181|gb|ABY23696.1| carbamoyl-phosphate synthase large subunit [Renibacterium
           salmoninarum ATCC 33209]
          Length = 1106

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQALRVLKEEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +L    +    + I A  L  D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALDKNGVLAKYNVELIGANIAAIELGEDREKFKGVVERCGAESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P V++P      LG  +   ++ +         ++   ++L+E+
Sbjct: 149 VHAMDEALVAAADLGYPLVVRPSFTMGGLGSGLAYNEKDLHRIAGAGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +F    +      +          +        
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENFDPVGVHTGDSITVAPAMTLTDREYQNLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIEPDTGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|163738698|ref|ZP_02146112.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107]
 gi|161388026|gb|EDQ12381.1| pyruvate carboxylase [Phaeobacter gallaeciensis BS107]
          Length = 1146

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++K   GG   G+  I  +  +   +L+            E Y
Sbjct: 142 NDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGY 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL- 230
           ++ +      +    L      +         ++  +       PA    +  +      
Sbjct: 202 LEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRTEICDL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                Q +        +FL D    K +++E+N +
Sbjct: 262 GRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296


>gi|163741590|ref|ZP_02148981.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10]
 gi|161385324|gb|EDQ09702.1| pyruvate carboxylase [Phaeobacter gallaeciensis 2.10]
          Length = 1146

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 44/155 (28%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++K   GG   G+  I  +  +   +L+            E Y
Sbjct: 142 NDMDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGY 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL- 230
           ++ +      +    L      +         ++  +       PA    +  +      
Sbjct: 202 LEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRTEICDL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                Q +        +FL D    K +++E+N +
Sbjct: 262 GRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296


>gi|225159230|ref|ZP_03725532.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
 gi|224802177|gb|EEG20447.1| carbamoyl-phosphate synthase, large subunit [Opitutaceae bacterium
           TAV2]
          Length = 1075

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 101/299 (33%), Gaps = 38/299 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ + +                     +  ++A  +PD    
Sbjct: 29  SGTQACKALRACGYQIVLVNSNPATIMTDPVMADATYIEPLNVARLEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +       + IL+   +      + A     D+   K+ + + G+ +  S  
Sbjct: 89  NLGGQTGLNLSLELSKKGILQKYGVEVIGVNLDAIERGEDREIFKETMRALGIGLPDSRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   ++ P V++P       G  ++     +   + +  S +   Q LIEQ
Sbjct: 149 VHTVEEAELAAAELNYPVVVRPAYTMGGTGGGLVYNIDELRTTVARGLSLSMTTQCLIEQ 208

Query: 171 YVDGIE---LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            + G E   +         +              +            +PA    D+ K++
Sbjct: 209 SILGWEELEVEVVRDASGKMITVCFIENVDAVGVHTGDSFCTAPMLTIPA----DVQKQL 264

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           Q +A+   ++IG  G +      DP + ++  +EIN +   T  S     +   G+   
Sbjct: 265 QEIAYKVVESIGVIGGTNVQLARDPATGRIVIIEINPR---TSRSS-ALASKATGFPIA 319



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  + A  +P        G   
Sbjct: 588 ALREAGYETIMVNCNPETVSTDYDTSDKLYFEPLTVEDVLQIHAKERPIGVIVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     + I  T    + +A   D  R         +P           +   + 
Sbjct: 648 LNIARELAANGVRILGTSIDTIDTAEDRDLFRQMMERLDIPMPESGMASTIDEAISVANR 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +I+P       G+ +I  +  +   + ++   +    LL+++++   +       
Sbjct: 708 IGYPIMIRPSFILGGRGMEIIYDEDMLREYVAKAIDVSPERPLLLDRFL---QSALECEA 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +P    +       S +S  V+P       +   +        Q +   G
Sbjct: 765 DALADGKDVFIPAVMEHIELAGVHSGDSACVIPPVTIPQKHLDTINAYTRKIAQELKVVG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +    +     + KV+ LE N +   T     P ++         +   ++  AS  +
Sbjct: 825 LMNMQYAI--ENDKVYVLEANPRASRT----VPLVSKVCNVQMARIATQLMLGASIPK 876


>gi|229139252|ref|ZP_04267827.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
 gi|228644311|gb|EEL00568.1| D-alanine--D-alanine ligase [Bacillus cereus BDRD-ST26]
          Length = 53

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 28/50 (56%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLK 50
          + V+MGG+SSE++VS+ +G    + L+   +++  I ++   G      +
Sbjct: 3  IGVIMGGVSSEKQVSIMTGNEMIANLDKNKYEIVPITLNEKNGFNRKSER 52


>gi|88808802|ref|ZP_01124312.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           7805]
 gi|88787790|gb|EAR18947.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           7805]
          Length = 1107

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 49/314 (15%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALKAEGYEVVLVNSNPASIMTDPEMADRTYVEPLTPEVVTRVIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   I    + + A   + D+   K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAEDGTLDRFGIELIGADLKAIRKAEDRQLFKEAMERIGVKVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++        + + P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSMDEAKDVGASIGTFPRIIRPAFTLGGSGGGIAYNPEEFDAICKSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P    V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPQDGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAK 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|318041817|ref|ZP_07973773.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CB0101]
          Length = 1097

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 55/314 (17%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D              V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPDMADRTYIEPLTPDVVRRVIEQERPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAKDGTLEQYGVELIGANLQAIEKAEDRDLFKQAMERIGVAVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +      L     +  +Q+LIE
Sbjct: 149 ATTLEEAEAVGEQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAICLSGLDASPVNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +   + D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 AIAIIREIGVDTGGSNIQFAINPANGDVIVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340



 Score = 39.9 bits (91), Expect = 0.47,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 7/172 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V++P        + V+  ++ +   + ++ +      +LI+QY++       
Sbjct: 729 AERVGYPVVVRPSYVLGGRAMEVVFGEEELNRYMSEAVNVEPDHPVLIDQYLEN-ATEVD 787

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V          +     +       +S  ++  +    +       +++ +     A+  
Sbjct: 788 VDALCDATGRVVIGGLMEHIEPAGVHSGDSACALPAVSLEQQALATIRQWSEALALALQV 847

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    F        V+ +E N +   T     P +A   G    ++   +
Sbjct: 848 NGLINLQFAI--KDGDVYIIEANPRASRT----VPFVAKATGVPLAKVASQI 893


>gi|144900957|emb|CAM77821.1| urea amidolyase [Magnetospirillum gryphiswaldense MSR-1]
          Length = 1203

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 60/182 (32%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + + +  +     +       +      +++       
Sbjct: 147 AKRIGYPVMLKSTAGGGGIGLSLCRGEAELEPLFERVQRLARNNFKDPGLFLEKYVERGR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +        +  V          +  +       PA  I   +  ++   A    QA+G
Sbjct: 207 HIEVQIFGDGKGNVVALGERDCSAQRRNQKVVEETPAPGISPHLRHQLCETAVKLGQAVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                  +FL+D  + +  +LE+N +     G+T            G    +L+ WMV  
Sbjct: 267 YANAGTVEFLYDTDADEFHFLEVNTRLQVEHGVTE--------QVTGI---DLVEWMVRQ 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|291483598|dbj|BAI84673.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. natto BEST195]
          Length = 1030

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNSNPATIMTDEAFADEIYFEPLTAESLTAIIKKEQPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS     +  VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELNQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNETDAIRFAESIGFPVIIRPAYTLGGKGGGIAPDKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 87/294 (29%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHIVNVAEQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                              I
Sbjct: 645 NAAEALEKAGITLLGTSFQTLDVLEDRDQFYQLLDELGLKHAKGEIAYTKEEAASKASEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNDEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP       + + ++  A    + +  +GI
Sbjct: 763 GEDVFI----PTYTEHIERAGVHSGDSFAILPGPSITSGLQQGMKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866


>gi|255283885|ref|ZP_05348440.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
 gi|255265606|gb|EET58811.1| carbamoyl-phosphate synthase, large subunit [Bryantella
           formatexigens DSM 14469]
          Length = 1065

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + ++        +     +
Sbjct: 90  LGGQAGLNLAMELEERGFLKENNVRLIGTTAETIKKAEDRQEFKNTMEKIGEPIAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 ETIEEGVAFTNTIGYPVVLRPAYTLGGSGGGIAHNYEELTEILANGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 92/297 (30%), Gaps = 32/297 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   I         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENIVRLEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +             P   ++        + + 
Sbjct: 641 IKLTESLMKMGVPILGTSAENVDAAEDRELFDGILEKCGIPRPAGHTVFTAEEAKKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAISDEDVDEFIGIINRIAQEHPILVDKYLVGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  V P   I   +   ++       Q++   G
Sbjct: 761 DGTDILI----PGIMEHIERAGIHSGDSISVYPAQSIDAKVKATIEDYTRKLAQSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F+      +V+ +E+N +   T     P ++   G     L   ++  A   
Sbjct: 817 LINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVILGAKIK 867


>gi|332703218|ref|ZP_08423306.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
 gi|332553367|gb|EGJ50411.1| D-alanine--D-alanine ligase domain protein [Desulfovibrio africanus
           str. Walvis Bay]
          Length = 341

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 104/304 (34%), Gaps = 27/304 (8%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGL-----VLAHLKPDLAFNVLH---GNFGEDGLVQAI 71
           +A   AL         I V  S+ L      LA ++P+  FN++    G+     L  A+
Sbjct: 25  RAVRQALFAMDH--MPIGVAFSLDLDDARGTLAAMRPNCVFNLVEDVGGSSRLAHLAPAL 82

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP-VCPSILVNRFTMDSQHLISPPYVI 130
           LE + +P+T  G  +  LS  K+  K+V+++ G+P    S  +   T           V 
Sbjct: 83  LEHMGMPFTGCGSESMLLSTSKLACKRVLTAAGIPTPPWSEGLPEETSFVPGRYILKSVY 142

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +    G     +V     +     L       G +   E +VDG E    V+   +    
Sbjct: 143 EHASLGLDETSVVQASSPADLAKPLARRRERFGGRWFAEGFVDGREFNIAVIDGPNGPEV 202

Query: 191 EIAVPKSDF---------YSYELKY------SSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                               Y  K+                      I  ++ + A    
Sbjct: 203 LPHAEIVFRGFSKERLRIVGYRAKWDEDSFEYENTQRRFDFPDKDAQILAQLSQSALGCW 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +A G  G +R DF         + +++N  P ++P + F   A  AG  F  L+  ++E 
Sbjct: 263 RAFGLTGYARVDFRV-AEDGTPWIIDVNANPCLSPDAGFAAAAGRAGMDFTALVSRVLEI 321

Query: 296 ASCL 299
            +  
Sbjct: 322 GAAN 325


>gi|270308372|ref|YP_003330430.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           VS]
 gi|270154264|gb|ACZ62102.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides sp.
           VS]
          Length = 1079

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 87/301 (28%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G +   ++ +                      S+  ++   +PD     
Sbjct: 27  GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 86

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V      +L    +    + I     + D+   +         VP   ++
Sbjct: 87  LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLAEIGEPVPPSETV 146

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P VI+P       G         +        + +   Q+L+E+ 
Sbjct: 147 TTAGDALKIARKIGLPVVIRPAYTLGGTGGGFAHNWDEVEEVAQTGLNASPIHQILVEKS 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +          +   +     + ++  +
Sbjct: 207 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 265

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        +P   + + +E+N  P ++  S     +   GY    +   
Sbjct: 266 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 321

Query: 292 M 292
           +
Sbjct: 322 I 322



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/177 (15%), Positives = 59/177 (33%), Gaps = 13/177 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++     +   +  +   N G  +LI++Y+ G E+   
Sbjct: 699 AESIGYPVVVRPSYVLGGRAMEIVSDASDLIRYMSAAIELNTGHPILIDKYLVGKEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            + D          P    +       S +S  V P +         +        +A+ 
Sbjct: 759 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNAHDLATISDYTIRIGKALN 814

Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F+           V+ LE+N +   T     P ++   G    ++ + +
Sbjct: 815 VRGLMNIQFVVSKDPEGGDNIVYVLEVNPRGSRT----VPFLSKVTGIPMVDIAVNI 867


>gi|120435282|ref|YP_860968.1| hypothetical protein GFO_0927 [Gramella forsetii KT0803]
 gi|117577432|emb|CAL65901.1| conserved hypothetical protein [Gramella forsetii KT0803]
          Length = 358

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 56/354 (15%), Positives = 111/354 (31%), Gaps = 71/354 (20%)

Query: 1   MAVLM-----------------GGISSEREVSLSSGKACASALE---------------D 28
           +A+L                  GG S        SG   A +L+                
Sbjct: 7   IAILFQAQKPPIQKGIQKPMKPGGYS-------DSGADIAYSLKNKDLPIITPVENPDLK 59

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
             +     D    +   L         N +                 +I         + 
Sbjct: 60  NDYDWVFPDTKNGIQSALDKGATIFWLNTV----LFKDHPIETFFDGKIEIVGQQPKDAD 115

Query: 89  LSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           L  DK R+ Q++    +P+  + I   +   ++    + P V KP++G  S G+ V +  
Sbjct: 116 LYDDKWRTNQLLKEQKLPIPRAKIFSKKNLKNNSFDFTFPIVTKPIRGRGSQGVHVAQNQ 175

Query: 148 QSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           + +   + +   S  +G ++ IE+Y+ G E+T  VM      +         ++S     
Sbjct: 176 KELFQLINELIDSDKYGKEVYIEEYLSGQEITITVMPPGKYLLQNKEERIHSYWSLPAIK 235

Query: 207 SSLNSTHVLPAK----------------IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
              +   + P                     D    +      A + I  +   R D   
Sbjct: 236 RFNHHNGIAPYNGTVAIIENSSILSDSEQQKDEIILISEQCEKAAKIIKAKAPIRIDCRA 295

Query: 251 DPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVED 295
           +  +   F  ++N++P MT           S+    A   G+++ +LL+ ++E 
Sbjct: 296 N-DNGDYFIFDLNMKPNMTGPSRSHRKDQDSLTSLAARKIGWNYEDLLINLLEQ 348


>gi|182677862|ref|YP_001832008.1| carbamoyl-phosphate synthase, large subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182633745|gb|ACB94519.1| carbamoyl-phosphate synthase, large subunit [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 1107

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 90/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL   G+++  +         D D +    +  + PD+               
Sbjct: 29  SGTQACKALRQEGYRIVLVNSNPATIMTDPDMADRTYIEPITPDVVAKIIAKERHAAPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G              +LE  ++    +   A   + D+   ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLKKMGVLEDYDVEMIGATAEAIDKAEDRELFREAMTKIGLST 148

Query: 108 CPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +   T   D    I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PRSHQIKTLTQALDILDDIGLPAIIRPSFTMGGTGGGIAYNKAEFIDIIERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLVEESVLGWKEYEMEVVRDRNDNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQV 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPSDGRMIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAARL 331



 Score = 41.0 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 19/55 (34%), Gaps = 6/55 (10%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G     +       +++ LE+N +   T     P +A   G    ++   +
Sbjct: 856 LKVGGFMNVQYAL--KDGEIYVLEVNPRAART----VPFVAKVIGIPLAKIASRI 904


>gi|284044658|ref|YP_003394998.1| carbamoyl-phosphate synthase, large subunit [Conexibacter woesei
           DSM 14684]
 gi|283948879|gb|ADB51623.1| carbamoyl-phosphate synthase, large subunit [Conexibacter woesei
           DSM 14684]
          Length = 1042

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 99/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG      L + G++V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKVLMEEGYEVVLVNSNPATIMTDPEIATATYVEPLLPGPVAQVIERERPDALLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G       +       L   ++    +   A   + D+ R ++ + +  + V  S +
Sbjct: 89  TLGGQTALNLAKALHEDGTLTRYDVELIGANYEAIDRAEDRDRFRETMETARLRVPRSAI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   I  P +I+P       G  + + +        +    +  DQ+LI++
Sbjct: 149 ATTLEEARGALQDIGLPMIIRPAFTLGGRGGGIARTEAEFEAICARGIEASPIDQILIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G       +     D   I     +       ++  +        +    Y++++  
Sbjct: 209 SVLGWGEFELEVMRDHADNVVIICSIENLDPMG-VHTGDSVCVAPQQTLTDKQYQKLRDQ 267

Query: 231 AFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           A    +A+G   G S   F  +P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 268 AIAVIRAVGVETGGSNVQFAVNPETDEIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 323

Query: 290 LWM 292
             +
Sbjct: 324 ARL 326



 Score = 41.0 bits (94), Expect = 0.19,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 73/266 (27%), Gaps = 9/266 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  V    KP+       G              + I  T    + 
Sbjct: 569 DRLYFEPLTL---EDVLGVCEIEKPEGVIVQFGGQTPLRLAAGLEAAGVPILGTSIDAID 625

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P   +       +     +  P +++P        + ++  
Sbjct: 626 HAEDRGRFGRLLEQLGFSAPPYATAHSPEEALAKAPGVGFPLLVRPSYVLGGRAMEIVYS 685

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   L +  + +   + +         +   V          I             +
Sbjct: 686 LDGLQDYLTRVGAAHGSGKEIFLDRFLEDSIEVDVDALCDGTDVWIGGIMQHVEE-AGIH 744

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  + P  +  D   +++       +A+G  G+    +  D  S +++ +E N + 
Sbjct: 745 SGDSACVLPPHSLGPDALAQIRAHTEGIAKALGVVGLLNVQYAVD-KSGQLYVIEANPRA 803

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P ++   G    +L   +
Sbjct: 804 SRT----VPFVSKAIGLPLAKLACRI 825


>gi|171316273|ref|ZP_02905495.1| pyruvate carboxylase [Burkholderia ambifaria MEX-5]
 gi|171098595|gb|EDT43394.1| pyruvate carboxylase [Burkholderia ambifaria MEX-5]
          Length = 1199

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V    K D      +G   E+      +    I +            +K+ 
Sbjct: 95  LDID-DILRVARQSKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 152

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++  Q + 
Sbjct: 153 ARNAAIAAGVPVMPATAPLPDDLDACRALAAEVGYPLMLKASWGGGGRGMRVLESAQDLE 212

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            K 
Sbjct: 213 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDLHGTVVHLYERDCTVQRRNQKV 272

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L       + +     A    +A+G       +FL D  + + +++E+N +
Sbjct: 273 VERAPAPYLDHDGRHALCE----AALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 327


>gi|152989880|ref|YP_001355602.1| phosphoribosylglycinamide formyltransferase 2 [Nitratiruptor sp.
           SB155-2]
 gi|172048724|sp|A6Q186|PURT_NITSB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|151421741|dbj|BAF69245.1| phosphoribosylglycinamide formyltransferase 2 [Nitratiruptor sp.
           SB155-2]
          Length = 388

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 77/279 (27%), Gaps = 30/279 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D      V  V+   KPD     +
Sbjct: 23  GKEVAIEAQRLGIEVVAVDRYPNAPAHLVAHRSYVIDMKSKEQVLEVIFREKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E            IP   +    +    +  +               +       
Sbjct: 83  EAINIEALFEAEERGFRVIPNAEAVN-KTMNRKNIRKFAAEELGLKTSQYRFVSSFEGLQ 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P VIKP+   S  G  + + +  +      +         LI +     +  
Sbjct: 142 EAARTLGFPCVIKPVMSSSGHGQSIARNEADLERSWEIAKEARGDASELIVEEFIDFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++     ++ + +A      +
Sbjct: 202 ITLLTARNETGTVFCPPIGHI-----QKDGDYIFSWQPMQMSETALQKAKEIAKTITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           G RGI   +        +V++ E++ +P      +   +
Sbjct: 257 GGRGIFGVELFV--KGDEVYFSEVSPRP--HDTGMVTMI 291


>gi|119356886|ref|YP_911530.1| carbamoyl-phosphate synthase L chain, ATP-binding [Chlorobium
           phaeobacteroides DSM 266]
 gi|119354235|gb|ABL65106.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Chlorobium phaeobacteroides DSM 266]
          Length = 485

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 81/223 (36%), Gaps = 17/223 (7%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+     +++  ++ +            DK+ SK++     VP  P I 
Sbjct: 79  NAIHPGWGFLSENAKFAQMVQDSDLIWIGPSPEVIHKMGDKIESKKIAKEAKVPTIPGIN 138

Query: 113 VN-----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNH 162
                    T   +  ++ P +IK   GG   G++ +  D  +   L Q       S+ +
Sbjct: 139 SPKTAEEIRTWMQEEDVALPIIIKASSGGGGKGMVRVTHDSELENALAQARSEAKKSFGN 198

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            + L+ +    G  +   ++ D   +V  +   +        + +           I  D
Sbjct: 199 DEILVEKFIEKGRHIEVQIIADQHGNVIHLFERECTLQ----RRNQKIIEEAPSPSIDDD 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I + +   A    + IG       +FL D  + K ++LE+N +
Sbjct: 255 IRQSICETAVQLMRTIGYSSAGTVEFLLDAATGKFYFLEVNTR 297


>gi|288818899|ref|YP_003433247.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus
           TK-6]
 gi|116234998|dbj|BAF34937.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus]
 gi|288788299|dbj|BAI70046.1| pyruvate carboxylase small subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 475

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 65/328 (19%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP------------ 51
           EV+L        A ++ G +   I          V ++    L    P            
Sbjct: 12  EVALR----IIRACKELGIRTVAIYSEADARSLYVKKADESYLIPGDPVWAYLDYVRIVD 67

Query: 52  -------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D      +G   E+       +   I +         +  DK+++K+++   G
Sbjct: 68  LAKSVGADAVHPG-YGFLAENAEFARFCQKRGITFIGPKPEHIEMFGDKVKAKKMMKKLG 126

Query: 105 VPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-- 158
           +P  P +          +     I  P ++K   GG   G+ V+K ++ +P         
Sbjct: 127 IPTVPGVEEPLKDPTDALHYAKEIGFPIILKSAYGGGGRGMRVVKSEKELPQLFESGYRE 186

Query: 159 ---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +  GD  + +   +   +   ++GD   +V  +            K   +    VL
Sbjct: 187 AETFFGKGDLFIEKYLENPKHIEVQILGDKYGNVVHLGERDCSIQRKHQKVLEVTPCPVL 246

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P     ++  ++  L+  A   +G       +FL D    + +++E+N +          
Sbjct: 247 PK----EMRNKMLGLSVRAMMQVGYESAGTLEFLVDIKKGEFYFIEMNTR---------- 292

Query: 276 EMAAY------AGYSFRELLLWMVEDAS 297
               +      +G    +++  M+  A+
Sbjct: 293 LQVEHTITEMVSGV---DIVEQMIRVAA 317


>gi|82701613|ref|YP_411179.1| carbamoyl-phosphate synthase, large subunit [Nitrosospira
           multiformis ATCC 25196]
 gi|82409678|gb|ABB73787.1| carbamoyl-phosphate synthase large subunit [Nitrosospira
           multiformis ATCC 25196]
          Length = 1075

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++   ++ + +                     V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRTILVNSNPATIMTDPETADVTYIEPIIWPMVEKIIAIERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L+   +    +   A   + D+ + KQ ++  G+    S +
Sbjct: 89  TMGGQTALNCALDLAKNGVLDKYGVELIGASREAIDKAEDREKFKQAMTRIGLGSARSAI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      Q       P +I+P       G  +    +       +    +   +LLIE+
Sbjct: 149 AHSLEEALQVQAMVGYPAIIRPSFTLGGSGGGIAYNREEFLEICERGLEASPTKELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVIGWKEFEMEVIRDRNDNCIIVCAIENVDPMGVHTGDSITVAPAQTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAINPEDGRMLVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 94/297 (31%), Gaps = 37/297 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + GF+   +         D D              V  ++A  KP        G   
Sbjct: 582 ALREDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVAVEKPAGVIVQFGGQTP 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T   ++  A   ++ +          P   +         +   
Sbjct: 642 LKLARDLEANGVPIIGTSPDMIDCAEDRERFQKMLHQLGLKQPPNRTARTAEEAFAAAEE 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ +   +   + ++   +H   +L++ +  D +E+    +
Sbjct: 702 IGYPLVVRPSYVLGGRAMEIVHEQTHLERYMKEAVKVSHDSPVLLDHFLNDAVEVDVDAV 761

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  + P  +   +  E++R      +A+   G
Sbjct: 762 SDGENVLIGGIMEHIEQAG---VHSGDSACSLPPYSLSARLQDELRRQTAAMARALNVVG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +    F     +  V+ LE+N +   T     P ++   G    ++       A C+
Sbjct: 819 LMNVQFAI--QNDIVYVLEVNPRASRT----VPFVSKATGIPLAKI------SARCM 863


>gi|331084350|ref|ZP_08333454.1| carbamoyl-phosphate synthase large subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
 gi|330401614|gb|EGG81195.1| carbamoyl-phosphate synthase large subunit [Lachnospiraceae
           bacterium 6_1_63FAA]
          Length = 1065

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T S  +  A    + +         +     +
Sbjct: 90  LGGQAGLNLAMELEERGFLKEHNVRLIGTTSETIKKAEDRQEFKDTMEKIGEPIAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +   ++ +   L      +   ++L+E+ 
Sbjct: 150 KNVEDGIAFSNKIGYPVVLRPAYTLGGSGGGIANNEEELVEILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 94/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A E  G++   I         D D              V  V+   KPD A     G   
Sbjct: 581 AFEKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENVVNVEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  I   ++I  T +  + +A   +             P   ++        + + 
Sbjct: 641 IKLTEALIKMGVKILGTSAENVDAAEDRELFDGILEECHIPRPKGHTVYTAEEAKKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDEDVEEYIGIINRIAQEHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   +   K ++       +++   G
Sbjct: 761 DGENILI----PGIMEHIERAGIHSGDSISVYPARTISETAKKTIEEYTRRLAKSLHVLG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 MINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLAAKVI 861


>gi|320450480|ref|YP_004202576.1| carbamoyl-phosphate synthase, large subunit [Thermus scotoductus
           SA-01]
 gi|320150649|gb|ADW22027.1| carbamoyl-phosphate synthase, large subunit [Thermus scotoductus
           SA-01]
          Length = 1035

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/298 (12%), Positives = 84/298 (28%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++   ++ +                       +  V+A  +PD    
Sbjct: 29  SGTQAVKALRGAGYEAILVNSNPATIMTDPELAERTYLEPLTLEYLERVIAEERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  +    E +   Y           +      ++ +         VP    
Sbjct: 89  TLGGQTALNLSMALHEEGVLARYGVELIGAKAEAIKKGEDREEFQKAMRKIGLEVPRGQM 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G  + + +  +   L +    +     L+E+
Sbjct: 149 VGSVEEGLHFAREVGYPVVVRPSFTLGGTGGGIARNEAELREVLGRGLLLSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDAEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 KAVIREIGVDTGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 41.4 bits (95), Expect = 0.14,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 82/289 (28%), Gaps = 28/289 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  ++ H KP      L G   
Sbjct: 583 ALREAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNLVEHEKPIGVIATLGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      +++  T    +  A    +            P           ++    
Sbjct: 643 LKLAKGLEEAGVKLLGTPFAAIHKAEDRHEFNRLCRELGIPQPEGRVAATPGEALELAEE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P + +P        + V++  + +   L +          ++        L   V  
Sbjct: 703 VGYPLLARPSYVLGGRAMRVLQSREELKHYLEEVYEPLQDKPSILLDRYLEGALELDVDA 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            +  +   IA            +S  ++T + P  +      +V+        A+G +G+
Sbjct: 763 LSDGEEVMIAGVMEH-VERAGVHSGDSATVLPPVHLSPGALDKVRAYTRKLALALGVKGL 821

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
               +       +V+ LE N +   T     P ++   G    +L   +
Sbjct: 822 LNVQYAVL--GEEVYILEANPRASRT----VPFVSKAIGIPLAKLAALI 864


>gi|302874442|ref|YP_003843075.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
 gi|307690951|ref|ZP_07633397.1| carbamoyl phosphate synthase large subunit [Clostridium
           cellulovorans 743B]
 gi|302577299|gb|ADL51311.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulovorans 743B]
          Length = 1064

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ++++ G +   I+ +                       V  ++ + +PD    
Sbjct: 29  SGTQACKSIKEEGIETILINSNPATIMTDSNVADKVYIEPLKEEVVEEIIKNERPDGILA 88

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G                    +E+  T+S  +  A   ++ ++  +     +P    
Sbjct: 89  GFGGQTALNLAMNLREQGILDKYNVELLGTNSDAIKKAEDREEFKNLMLEIGEPIPSSII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    I  P +I+P       G  +      +     +    +   Q+L+EQ
Sbjct: 149 AHTLEECIDFVGKIGFPVIIRPAYTLGGSGGGIASNMDELHDICSRGLKLSPIGQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   + +     ++  +        +    Y  ++  
Sbjct: 209 SVAGW-KEIEYEVIRDAKDNCIIICNMENFDPVGVHTGDSIVIAPSQTLTDKQYHMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     +  DP+S     +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ATKIIRSLKIEGGCNIQYALDPVSENYVVIEVN--PRVSRSS--ALASKAAGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 91/268 (33%), Gaps = 16/268 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   ID   +V  ++   KP+       G       +   L    +    +   A
Sbjct: 606 DKLYFESLYID---NVMDIINREKPEGVVVQFGGQ--TAINLAEQLTKRGVNILGTDFEA 660

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+ +  + +    +       I       D+   +  P +++P        + V+
Sbjct: 661 IDLAEDREKFSKFLEDINIEAPKGRAITSMSEGYDAVAQLGYPVILRPSYVIGGRAMQVV 720

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                +   L ++ + +    +LI++Y+ G E+    + D    +    +   +      
Sbjct: 721 YDKAGLQKYLTEAVTLSTEHPVLIDKYIQGTEIEVDAISDGENILIPGIMEHVERTG--- 777

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  + T      +  D+   +        + +  +G+    ++FD    KV  +E+N 
Sbjct: 778 VHSGDSITIYPEFTLSEDVMATLLDCTERIAKGLKIKGLVNIQYVFD--GEKVRVIEVNP 835

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   T     P ++        ++ + +
Sbjct: 836 RASRT----VPILSKVTNIPMVKIAVDI 859


>gi|256832553|ref|YP_003161280.1| carbamoyl-phosphate synthase, large subunit [Jonesia denitrificans
           DSM 20603]
 gi|256686084|gb|ACV08977.1| carbamoyl-phosphate synthase, large subunit [Jonesia denitrificans
           DSM 20603]
          Length = 1109

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVILVNSNPATIMTDPEFADATYIEPITTDVLRSIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         ILE   +    + I A     D+   K+VV +CG     S  
Sbjct: 89  TLGGQTALNAAIALDEAGILEEFNVELIGANIAAIQRGEDREEFKKVVDTCGGESARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P V++P      LG  +   +Q +         ++   ++L+E+
Sbjct: 149 VHSLNEAKAAAEELGYPVVVRPSFTMGGLGSGIAYTEQDLERIAGAGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDKNDNVAVICSIENVDPVGVHTGDSITVAPALTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G     F  DP + ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 IAVIREVGVDTGGCNIQFAVDPDTGRIIVIEMN--PRVSRSS--ALASKATGYPIAKI 322


>gi|260590035|ref|ZP_05855948.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
 gi|260539547|gb|EEX20116.1| carbamoyl-phosphate synthase, large subunit [Blautia hansenii DSM
           20583]
          Length = 1065

 Score = 58.3 bits (139), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T S  +  A    + +         +     +
Sbjct: 90  LGGQAGLNLAMELEERGFLKEHNVRLIGTTSETIKKAEDRQEFKDTMEKIGEPIAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +   ++ +   L      +   ++L+E+ 
Sbjct: 150 KNVEDGIAFSNKIGYPVVLRPAYTLGGSGGGIANNEEELVEILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALNPNSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 94/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A E  G++   I         D D              V  V+   KPD A     G   
Sbjct: 581 AFEKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENVVNVEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  I   ++I  T +  + +A   +             P   ++        + + 
Sbjct: 641 IKLTEALIKMGVKILGTSAENVDAAEDRELFDGILEECHIPRPKGHTVYTAEEAKKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDEDVEEYIGIINRIAQEHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   +   K ++       +++   G
Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPARTISETAKKTIEEYTRRLAKSLHVLG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 MINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLAAKVI 861


>gi|296110381|ref|YP_003620762.1| carbamoyl-phosphate synthase large subunit [Leuconostoc kimchii
           IMSNU 11154]
 gi|295831912|gb|ADG39793.1| carbamoyl-phosphate synthase large subunit [Leuconostoc kimchii
           IMSNU 11154]
          Length = 1059

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G+ V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   ++ ++        +P    
Sbjct: 89  TLGGQTGLNMAKDLSEAGILDDLSIELLGTKLSAIEEAEDREEFKALMERLHEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +++P       G  +      +          +   Q+LIE+
Sbjct: 149 ATTLEEALDFADTHGYPVIVRPAYTLGGTGGGIANNHAELSDIAANGLDLSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +       T  +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDAHDNALVVASMENFDPVGIHTGDSIVTAPVQTLSDREVQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPHSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/171 (15%), Positives = 62/171 (36%), Gaps = 9/171 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             LI  P +I+P        + ++  D+ +   + ++   ++   +LI+ Y+ G E    
Sbjct: 697 AQLIGYPVLIRPSYVLGGRAMEIVSSDEELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVD 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D    V    +   +       +S  + +   P  +   +  E+ + A    +A+  
Sbjct: 757 VLSDGETAVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQDEMSQAAINLAKAMHT 813

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    F+        + +E+N +   T     P ++        +L   
Sbjct: 814 IGLMNVQFVIHE--NTAYVIEVNPRASRT----VPFISKVTHLPLAQLATR 858


>gi|297198321|ref|ZP_06915718.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sviceus
           ATCC 29083]
 gi|197714372|gb|EDY58406.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sviceus
           ATCC 29083]
          Length = 1102

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 85/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          L+   +    + + A     D+   K VV      +     
Sbjct: 89  TLGGQTALNTAISLHEAGTLDKYGVELIGANVEAINKGEDRDLFKDVVEEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLKGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVDPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|145520753|ref|XP_001446232.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124413709|emb|CAK78835.1| unnamed protein product [Paramecium tetraurelia]
          Length = 665

 Score = 58.0 bits (138), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 88/284 (30%), Gaps = 31/284 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +++   L   K  D+A       +H   G   E+       +  +I +   G
Sbjct: 49  EAYNIGPPQALQSYLRSDKIIDVALGTKSQAIHPGFGFLSENAQFSEDCQKNDIIFVGPG 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK ++++  VPV P         +        I  P +IK + GG   
Sbjct: 109 ADAIRKMGSKSESKIIMTNAQVPVVPGYHGENQDPNFLLQEAEKIGFPVLIKAVMGGGGK 168

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++++       L  +              V+        +                 
Sbjct: 169 GMRIVRQKSEFLEALEGAKREALKSFKDERVLVEKYIEKPRHIEVQIFGDKHNNYVHLFE 228

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               ++          P+ +   I  ++   A  A +A+        +F+FD  S K ++
Sbjct: 229 RDCSIQRRHQKVIEEAPSALEEKIRYDIGEKAKAAARAVKYSNAGTVEFIFDLDSSKFYF 288

Query: 260 LEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
           +E+N +              +       G    +L+ W +  AS
Sbjct: 289 MEMNTR----------LQVEHPITEMITGV---DLVEWQLRVAS 319


>gi|325262943|ref|ZP_08129679.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
 gi|324032037|gb|EGB93316.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. D5]
          Length = 1067

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 88/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFSKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVKSIVDLEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  +  A   +             P   ++       +  + 
Sbjct: 641 IKLTESLMKMGVPILGTSAENVDKAEDRELFDEILEECQIPRPTGGTVFTAEEAKEVANR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   +  K+          +++   G
Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSLSEAAKDKIAEYTRRLAKSLQVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 LINIQFIVCG-DEDVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 862



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLIRKEQPDSVLPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G  G +    ++    L        G  +  +   + R +   +   +    +    +
Sbjct: 90  LGGQAGLNLAMELEEAGFLKNNDVRLIGTTSETIRKAEDRLEFKATMEKIGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  + +  + +   L      +   Q+L+E+ 
Sbjct: 150 ENVADGLAFANEIGYPVVLRPAYTLGGSGGGIAQNSEQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P+S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPVSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|94499471|ref|ZP_01306008.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Oceanobacter sp.
           RED65]
 gi|94428225|gb|EAT13198.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Oceanobacter sp.
           RED65]
          Length = 668

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 64/218 (29%), Gaps = 9/218 (4%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
           N +H   G   E+       +   I +      A  L   K  SK  +    VP  P   
Sbjct: 78  NAVHPGYGFLSENTDFCQACQDNNITFIGPDPKAINLMGSKRLSKIEMLKAKVPCIPGYE 137

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                +         I  P +IK   GG   G+ ++K +      L  + S         
Sbjct: 138 GSDQSDETLFKEAKAIGFPVMIKASAGGGGRGMRIVKNEAEFAAQLKTAKSEALNAFGSD 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           E  ++   +    +                     ++          P+    +  ++  
Sbjct: 198 EMILEKAIMEPRHIEIQIFADRHGNCIYLGERDCSVQRRHQKVVEEAPSPFVSEAMRQSM 257

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A    G    +FL D  +   ++LE+N +
Sbjct: 258 GEAAVNAAKACDYVGAGTVEFLAD-KNGDFYFLEMNTR 294


>gi|330981476|gb|EGH79579.1| Urea amidolyase-related protein [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 767

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
            H I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 AHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCI----AAVQLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 312 MVQLAAGD 319


>gi|70607355|ref|YP_256225.1| carbamoyl phosphate synthase large subunit [Sulfolobus
           acidocaldarius DSM 639]
 gi|76364099|sp|Q4J8E8|CARB_SULAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|68568003|gb|AAY80932.1| carbamoyl-phosphate synthase L chain [Sulfolobus acidocaldarius DSM
           639]
          Length = 1052

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 100/296 (33%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETILVNSNVATVQTSRKFADKLYMIPVTWWTVERVIEKERPDAIMI 86

Query: 57  ------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                  L+               +++  T    +  ALS +K R   +  +  VP   S
Sbjct: 87  GFGGQTALNVGVDLYKKEILKKYGVKVLGTPIEGIERALSREKFRETMINVNLPVPPSLS 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G  V   ++ +  D+ ++ S ++  ++LIE+
Sbjct: 147 ARSEEEALEKARQIGYPVMVRVSFNLGGRGSTVAWSEEDLKRDIGRALSQSYIHEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+    +                +   +       ++  ++       +    +++++ +
Sbjct: 207 YLHHW-IELEYEVMRDKHGNSAVIACIENLDPMGVHTGESTVIAPCQTLDNKEFQDMRSM 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    ++I   G     F  +PL+ + + +E N  P M+  S     +   GY   
Sbjct: 266 SIDVAKSIDLVGECNVQFALNPLAYEYYIIETN--PRMSRSS--ALASKATGYPLA 317



 Score = 42.6 bits (98), Expect = 0.082,   Method: Composition-based stats.
 Identities = 27/250 (10%), Positives = 78/250 (31%), Gaps = 11/250 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  ++   K +       G  G     +     +++  T    +  A   +K      
Sbjct: 619 ERILDLVRKEKFNYVATFAGGQIGNTISKKLEENGVKLLGTSGHSVDIAEDREKFSRLLD 678

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   S            ++  P +++P    S   + ++  D  +   + +++ 
Sbjct: 679 KLGIKQPDWISARSIEEVRKFVEMVGYPVLVRPSYVLSGSAMRIVYNDTELVSYIKKATE 738

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +    +++ +Y+D                          +  E    S ++T  +P K 
Sbjct: 739 ISSEHPVVVSKYID----NAIEAEIDGASDGRGVYGVVLEHVEEAGVHSGDATISIPFKK 794

Query: 220 -PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
              +   +++       + +  +G     F+    +   + +E+N++      S+ P  +
Sbjct: 795 LSPETVHKMKESIHSISRELNIKGPFNVQFVV--KNGTPYIIEMNLR---ASRSM-PFSS 848

Query: 279 AYAGYSFREL 288
              G +  +L
Sbjct: 849 KVVGKNIIDL 858


>gi|330502304|ref|YP_004379173.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina NK-01]
 gi|328916590|gb|AEB57421.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina NK-01]
          Length = 1231

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 66/183 (36%), Gaps = 24/183 (13%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GIELTCG 180
            P ++K   GG  +G+ V +  + +             +      +++        L   
Sbjct: 152 YPVMLKSTAGGGGIGMRVCRSAEELSDAFEAVKRLGQNNFSDSGVFIEKYIQRARHLEVQ 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD   +V  + V          K         LPA +  ++       A    +A+  
Sbjct: 212 VFGDGQGEVIALGVRDCSVQRRNQKVLEETPAPNLPAGMADELCA----AAIKLAKAVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E A
Sbjct: 268 RSTGTVEFVYDSEAERFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELA 316

Query: 297 SCL 299
           +  
Sbjct: 317 AGD 319


>gi|114566807|ref|YP_753961.1| carbamoyl-phosphate synthase large subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
 gi|114337742|gb|ABI68590.1| carbamoyl-phosphate synthase large subunit [Syntrophomonas wolfei
           subsp. wolfei str. Goettingen]
          Length = 1074

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 92/292 (31%), Gaps = 30/292 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL DAG K   +         D D              V  ++   +P+       G
Sbjct: 578 CVWALRDAGIKAIIVNNNPETVSTDFDTSDRLYFEPLVYEDVMNIIDEEQPEGVIVQFGG 637

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               + +       ++I  T +  +  A   ++            P   ++      + +
Sbjct: 638 QTAINLVAALNRAGVKILGTSNDSIDRAEDRERFDLMVEKLGIPRPPGKTVFSVEEAVKA 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   +  + + N    +L+++Y+ G E+   
Sbjct: 698 AEKIGYPVLLRPSYVLGGRAMEIVYNVDELRQYMQTAVNVNREHPVLVDKYLLGKEIEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +       +S  +        +   I  +V        + +  
Sbjct: 758 AVCDGLQVLIPGIMQHIERAG---VHSGDSMAVFPAHDLSPAIKDKVVDYTLRLARELEV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G+    F+      +++ LE+N +   T     P ++   G    +L   +
Sbjct: 815 KGLINIQFV--EFEDELYVLEVNPRSSRT----VPFISKVTGIPLVKLGTEI 860



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 97/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G  V  ++ +                      +V  ++A  KPD     
Sbjct: 30  GTQACRALKEEGIAVVLLNSNPATIMTDANIADHVYFEPITVETVNKIIAREKPDGIIAN 89

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +            + +       +A A   +K ++        +P    +
Sbjct: 90  LGGQVGLNMALALDRAGVLEETGVPLLGMPLDAIARAEDREKFKATMQEIGEPIPESDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G      ++ +   +++    +  +Q LIE+ 
Sbjct: 150 HSVEEAIRFAEKIGYPVIVRPAYTLGGTGGGTAYDNEELQQIVVKGLKNSPINQALIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +       ++  +        +  + Y+ ++  +
Sbjct: 210 VAGFKEIEFEVMRDANDNCITICSMENVDP-VGIHTGDSIVVAPAQTLSDEEYQMLRASS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G     +  DP S+K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRHLKIIGGCNVQYALDPFSKKYYVIEVN--PRVSRSS--ALASKATGYPIAKVTTK 324

Query: 292 M 292
           +
Sbjct: 325 L 325


>gi|110639650|ref|YP_679861.1| carbamoyl-phosphate synthase large subunit [Cytophaga hutchinsonii
           ATCC 33406]
 gi|110282331|gb|ABG60517.1| carbamoyl-phosphate synthase large subunit [Cytophaga hutchinsonii
           ATCC 33406]
          Length = 937

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 91/301 (30%), Gaps = 31/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G   A +L + G +V+ I+ +                     +S+  +L + K D     
Sbjct: 30  GSQAARSLREEGIEVTLINSNPATIMTDKVVADNVYLLPLEKKSIIKILENHKIDAVLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           + G    +  ++       +   +      I A   + D+ + +  +   GV VC     
Sbjct: 90  MGGQTALNLAMECDKAGVWKKFGVRMIGVDINAIETTEDREKFRLKMIEIGVGVCKGATA 149

Query: 114 NRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             F    +    I  P VI+P       G   +         L +    +   ++L+EQ 
Sbjct: 150 TSFLQGKEIAQEIGFPLVIRPSFTLGGTGGGFVHTADKFDEALTKGLHASPTHEVLVEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+    I     +F    +      +             +   +  
Sbjct: 210 ILGWKEYELEILRDSIGNMIIICSIENFDPMGIHTGDSITVAPAMTLPDTIYQEMRDQSI 269

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +        G     F   P +  +  +EIN  P ++  S     +   GY   ++   
Sbjct: 270 KMMKAIGNFAGGCNVQFSVCPDTDHIIGIEIN--PRVSRSS--ALASKATGYPIAKISAK 325

Query: 292 M 292
           +
Sbjct: 326 L 326



 Score = 39.5 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 88/283 (31%), Gaps = 32/283 (11%)

Query: 20  KACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVL 58
               +A ++ G++   I           D+   +            ++   KP      L
Sbjct: 580 HGVLAA-KECGYETIMINCNPETVSTDFDIADKLYFEPVFWEHIYEIILLEKPVGVIVQL 638

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A    +  S     +   P    I      +
Sbjct: 639 GGQTALKLAEKLERYGIKIIGTDFQSLDLAEDRGRFSSLLKEINIPYPEFGVIENADEAV 698

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                ++ P +++P        + ++  +Q +   ++     + G+Q+L++ +++  IE 
Sbjct: 699 AISKKLNFPLLVRPSYVLGGQSMKIVINEQELEQHVVNLLKDHPGNQVLVDHFLENAIEA 758

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           + + + P  +  D+ ++++        A
Sbjct: 759 EADAICDGENVHIIGIMEHIEPAGIHSG---DSHSVLPPFDLSDDVIRQIEEHTKKIAIA 815

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +   G+    F     +  V+ +E N +   T     P +   
Sbjct: 816 LKTVGLINIQFAI--KNEIVYIIEANPRASRT----VPFICKA 852


>gi|153853362|ref|ZP_01994771.1| hypothetical protein DORLON_00760 [Dorea longicatena DSM 13814]
 gi|149754148|gb|EDM64079.1| hypothetical protein DORLON_00760 [Dorea longicatena DSM 13814]
          Length = 1066

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G         +     L        G  +  +   + R +  ++   +    +    +
Sbjct: 90  LGGQAALNLAMELDENGFLERNNVRLIGTTSETIKKAEDRLEFKMTMEKIGEPCAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P V++P       G  +      +   L      +   ++L+E+ 
Sbjct: 150 KDVQAGIEFAESIGYPVVLRPAYTLGGSGGGIADNRTELVEILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSNGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341



 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 90/293 (30%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDLEKPDGAVVQFGGQ-- 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    +++  C +P      +          
Sbjct: 639 TAIKLTESLMKMGVPILGTSAENVDAAEDRELFDEILEQCEIPRPTGGTVFTAEEAKKVA 698

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    
Sbjct: 699 NRLGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V P   I     + +        +++  
Sbjct: 759 VCDGEDILI----PGIMEHIERAGIHSGDSISVYPAQSISQKTKETIAEYTRRLAKSLHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 815 IGLINIQFIVCGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861


>gi|302307478|ref|NP_984147.2| ADR051Cp [Ashbya gossypii ATCC 10895]
 gi|299789020|gb|AAS51971.2| ADR051Cp [Ashbya gossypii ATCC 10895]
          Length = 1819

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 20/182 (10%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+  +     +     Q              +++        +
Sbjct: 769 EIGYPLMVKSTAGGGGIGLQRVDSAAELAAAFEQVQRQGELYFTDSGVFLESFIARARHV 828

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
               +                L+  +       PA   P    +++++ A     A+  +
Sbjct: 829 EVQIMGDGHGRTVALGERDCSLQRRNQKIIEETPAPNLPAHTRQKMRQAAQRLCSAVKYK 888

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F++D    + ++LE+N +              +       G    +L+ WM+  
Sbjct: 889 CAGTVEFMYDEQKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMLRI 935

Query: 296 AS 297
           A+
Sbjct: 936 AA 937


>gi|303319957|ref|XP_003069978.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240109664|gb|EER27833.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 711

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+           + +      A     DK RSK+++++ GVP  P    +    
Sbjct: 120 YGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVPCVPGYHGSNQDP 179

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
                    I  P +IK +KGG   G+ +    ++    L+       +S+     L+ +
Sbjct: 180 DLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDKLMSAKSESKNSFGDDQVLIEK 239

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     DI+++ + 
Sbjct: 240 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPQATRKDIWEKARA 299

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + +++E+N +
Sbjct: 300 AALA----VGYEGAGTVEFIFDNDTGEFYFMEMNTR 331


>gi|119183643|ref|XP_001242830.1| hypothetical protein CIMG_06726 [Coccidioides immitis RS]
          Length = 711

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+           + +      A     DK RSK+++++ GVP  P    +    
Sbjct: 120 YGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVPCVPGYHGSNQDP 179

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
                    I  P +IK +KGG   G+ +    ++    L+       +S+     L+ +
Sbjct: 180 DLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDQLMSAKSESKNSFGDDQVLIEK 239

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     DI+++ + 
Sbjct: 240 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPQATRKDIWEKARA 299

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + +++E+N +
Sbjct: 300 AALA----VGYEGAGTVEFIFDNDTGEFYFMEMNTR 331


>gi|261821937|ref|YP_003260043.1| urea carboxylase [Pectobacterium wasabiae WPP163]
 gi|261605950|gb|ACX88436.1| urea carboxylase [Pectobacterium wasabiae WPP163]
          Length = 1200

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 61/184 (33%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V      +             +      +++       
Sbjct: 147 AAEIGYPVMLKSTAGGGGIGMRVCYSATELSEVFDTVKRLGQNNFSDAGVFIEKYIERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +   +   A    QA+ 
Sbjct: 207 HLEVQIFGDGQGEVLALGVRDCSVQRRNQKVIEETPAPNLPNGVADALCSAAISLAQAVD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSATDRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|320034303|gb|EFW16248.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Coccidioides
           posadasii str. Silveira]
          Length = 711

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/216 (17%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+           + +      A     DK RSK+++++ GVP  P    +    
Sbjct: 120 YGFLSENAGFAQKCTQAGLVFIGPPWKAIEAMGDKSRSKEIMTAAGVPCVPGYHGSNQDP 179

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
                    I  P +IK +KGG   G+ +    ++    L+       +S+     L+ +
Sbjct: 180 DLLQKEADKIGYPVLIKAIKGGGGKGMRICSSRETFQDQLMSAKSESKNSFGDDQVLIEK 239

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     DI+++ + 
Sbjct: 240 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPQATRKDIWEKARA 299

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + +++E+N +
Sbjct: 300 AALA----VGYEGAGTVEFIFDNDTGEFYFMEMNTR 331


>gi|322824069|gb|EFZ29605.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 50/153 (32%), Gaps = 9/153 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYV 172
            +    I  P +IK + GG   G+ ++K      L L        + +     +L     
Sbjct: 155 CEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDRVILERYVT 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               + C +  D   +                +             I  ++   +  ++ 
Sbjct: 215 QPRHIECQIFFDKFGNGVFFFERDCSVQ----RRHQKVIEEAPAPHITPEMRHRIGTVSL 270

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A +A+G  G    +F+FD      F++E+N +
Sbjct: 271 RAAKAVGYVGAGTVEFIFDTERNTFFFMEMNTR 303


>gi|291550825|emb|CBL27087.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus torques
           L2-14]
          Length = 1067

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTIEVVEQLIKKEKPDSVLPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G  G +    ++    L E      G  +  +   + R +   +   +    +    +
Sbjct: 90  LGGQAGLNLAMELEEAGFLKENNVRLIGTTSETIKKAEDRLEFKATMEKIGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +    Q +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGLAFANKIGYPVVLRPAYTLGGSGGGIAHDSQQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 89/291 (30%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKDGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  +  A   +             P   ++       +  + 
Sbjct: 641 IKLTEALMKMGVPILGTSAENVDKAEDRELFDEILEECEIPRPTGGTVFTAEEAKEVANR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  V PA+   +    ++        +++   G
Sbjct: 761 DGTDILI----PGIMEHIERAGIHSGDSISVYPAQSLTEGAKAKIAEYTRRLAKSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 MINIQFIVCGEDD-VYVIEVNPRSSRT----VPYISKVTGIPIVPLATQVI 862


>gi|170698832|ref|ZP_02889894.1| pyruvate carboxylase [Burkholderia ambifaria IOP40-10]
 gi|170136228|gb|EDT04494.1| pyruvate carboxylase [Burkholderia ambifaria IOP40-10]
          Length = 1173

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V    K D      +G   E+      +    I +            +K+ 
Sbjct: 69  LDID-DILRVARQAKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++  Q + 
Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDLDVCKALAAEVGYPLMLKASWGGGGRGMRVLESAQDLE 186

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            K 
Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGTVVHLYERDCTVQRRNQKV 246

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L       + +     A    +A+G       +FL D  + + +++E+N +
Sbjct: 247 VERAPAPYLDRDGRHALCE----SALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 301


>gi|78060441|ref|YP_367016.1| pyruvate carboxylase [Burkholderia sp. 383]
 gi|77964991|gb|ABB06372.1| Pyruvate carboxylase [Burkholderia sp. 383]
          Length = 1172

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V      D      +G   E+      +    I +            +K+ 
Sbjct: 69  LDID-DILRVARQANVDAIHPG-YGFLSENPEFAQAVIDAGIRWIGPSPDVMRTLGNKVA 126

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+                 +  P ++K   GG   G+ V++ ++ + 
Sbjct: 127 ARNAAIAAGVPVMPATAPLPDDLAVCKALAEEVGYPLMLKASWGGGGRGMRVLENERDLE 186

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +   V+GD    V  +            K 
Sbjct: 187 TLLPVARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGTVVHLYERDCTVQRRNQKV 246

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L       + +     A    +A+G       +FL D  + + +++E+N +
Sbjct: 247 VERAPAPYLDHDGRHALCE----SALRLMRAVGYTHAGTVEFLMDADTGQFYFIEVNPR 301


>gi|95928377|ref|ZP_01311125.1| ATP-grasp enzyme-like [Desulfuromonas acetoxidans DSM 684]
 gi|95135648|gb|EAT17299.1| ATP-grasp enzyme-like [Desulfuromonas acetoxidans DSM 684]
          Length = 414

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/241 (14%), Positives = 69/241 (28%), Gaps = 13/241 (5%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
              K  +   D  +  ++  L       V  G       ++  L+  E+           
Sbjct: 67  LDHKPHESGFDDEILTLVRQLDVGSIMPVSEGFHNRLISMRDQLDAAEVHLFSPSRDNFD 126

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYV---IKPLKGGSSLGIIVI 144
            + DK    Q+     +PV   + ++          +  P V    K       + +   
Sbjct: 127 KATDKDYVHQLCLDLEIPVAKGMCLDELMEAGAESTLQYPLVLRTRKQNVDAGKVPVKAA 186

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
                  L           D +L+++Y  G E    ++                      
Sbjct: 187 YARTLEELLNWHRQFETFADNVLVQEYHPGAEEHVQILMHEGEMFMTGDYIGEHHMPLAG 246

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +    +   PA I   +            +A+  +GI+   F +DP + K  +LEIN 
Sbjct: 247 GVTVQRISCHHPAVIDDTV---------KLLKALNWQGIAGVQFHYDPDTGKYIFLEINP 297

Query: 265 Q 265
           +
Sbjct: 298 R 298


>gi|229828830|ref|ZP_04454899.1| hypothetical protein GCWU000342_00915 [Shuttleworthia satelles DSM
           14600]
 gi|229791993|gb|EEP28107.1| hypothetical protein GCWU000342_00915 [Shuttleworthia satelles DSM
           14600]
          Length = 1071

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  ++ +                       V  ++   KPD     
Sbjct: 30  GTQACRSLREEGVEVVLVNSNPATIMTDQEIADQVYIEPLTAEVVEQIILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++      LE   +    +       + D+   +         +     +
Sbjct: 90  LGGQAGLNLGMELAESGFLEKNGVRLIGTTPQTIFKAEDRQGFKDTMEKIGEPIASSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  + K +  +   L      +   ++L+E+Y
Sbjct: 150 HNVEDGIAFTKTIGYPVVLRPAYTLGGSGGGIAKNENELIEILTNGLRLSRVHEVLVERY 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IGGWKEIEYEVMRDAAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 IG  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIDEIGITGGCNVQYALNPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVTAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A   AG++   +         D D              V  ++   KPD A     G   
Sbjct: 582 AFSRAGYETIIVNNNPETVSTDFDVADKLYFEPLTAEDVRNIVDIEKPDGAVVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  I   + I  T +  + +A   +        +        ++   +   +  + 
Sbjct: 642 IKLTQDLIQMGVPIWGTRAEDVDAAEDRELFDEILQKTGIPRASGGTVYTAKEAKEVANR 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 702 IGYPVLVRPSYVLGGQGMQIAFNDEEIEDFIGIINRIAQDHPILVDKYLQGKEIEVDAIC 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +           + +      I   + K+++        A+  +G+
Sbjct: 762 DGDNILIPGIMEHIERTGIHSG---DSISVYPAHTISDSVKKKLEDYTERLAMALHVKGM 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+   +   V+ +E+N +   T     P ++   G    +L    +
Sbjct: 819 INIQFI--NIDEDVYVIEVNPRSSRT----VPYISKVTGIPIVDLATRAI 862


>gi|302188282|ref|ZP_07264955.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           642]
          Length = 771

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 88/259 (33%), Gaps = 30/259 (11%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H   G   E+       E   I +         +   K  ++ +    GVP+     
Sbjct: 76  NAIHPGYGFLSENAAFAQACEDAGIAFVGPTPEQLRVFGLKHTARALARQHGVPMLEGTE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      + + H I  P ++K   GG  +G+ V +  + +             +     
Sbjct: 136 LLDSLESAITAAHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAG 195

Query: 170 QYVD-----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +++        L   V GD   +V  + V          K         LP  +  ++ 
Sbjct: 196 VFIEKYIQRARHLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELC 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAY 280
                 A    +A+  R     +F+FD   ++ ++LE+N +     G+T      ++   
Sbjct: 256 A----AAVKLARAVNYRSAGTVEFVFDSDDQRFYFLEVNTRLQVEHGVTE-----QVW-- 304

Query: 281 AGYSFRELLLWMVEDASCL 299
            G    +L+ WMV+ A+  
Sbjct: 305 -GV---DLVSWMVQLAAGD 319


>gi|293400959|ref|ZP_06645104.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305985|gb|EFE47229.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1066

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 37/298 (12%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C   L + G++   I+ +                       V  ++   +P        G
Sbjct: 577 CVKTLRECGYEAIVINNNPETVSTDYSISDKLYFEPLTIEDVMHIIDLEQPLGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  T    +  A    +            P+  + +     +  
Sbjct: 637 QTAINLADKLVERGVKILGTSLENIDRAEDRHEFEEMLHKLDIPQPMGETAVTVEEALVI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++  D  + + +       +H   +L+++Y+ G E+  
Sbjct: 697 ANKIGYPVLVRPSYVLGGRAMEIVHNDDDLKIYMATAVKEISHDAPILVDKYIVGKEMEI 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V PA      +   +   A    +  
Sbjct: 757 DAICDGEHVYI----PGIMEHIERAGVHSGDSISVYPAPTASQQVKDTIIDYAIRIGKGF 812

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRE 287
              G+    F+ D    KV+ LE+N       P ++ ++  P          G+S +E
Sbjct: 813 HFIGLYNIQFIVD-RDEKVYVLEVNPRSSRTVPFLSKITGVPMSYVATRCVLGHSLKE 869



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 88/312 (28%), Gaps = 41/312 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G    ++L + G++V  I+ +                          ++   +PD     
Sbjct: 30  GTQACTSLREEGYEVVLINSNPATIMTDSVIADRVYIEPLTLEFASRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+           +E+  T    +  A   DK R         VP    +
Sbjct: 90  LGGQTGLNLVVELAESGILDEYHVEVLGTALDAIEKAEDRDKFRELMYEIGEPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P V++P       G      +  +          +   Q LIEQ 
Sbjct: 150 HTIEEAVAFASDNGYPVVVRPAFTLGGTGGGFAHSEAELRTICDNGLKISPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +       ++  A
Sbjct: 210 IAG-YKEIEYEVMRDNADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLTDRECGIMRASA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL--- 288
               +A+   G        DP S K + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 289 ------LLWMVE 294
                 L  ++ 
Sbjct: 325 VAVGLTLDEIIN 336


>gi|166030993|ref|ZP_02233822.1| hypothetical protein DORFOR_00674 [Dorea formicigenerans ATCC
           27755]
 gi|166029260|gb|EDR48017.1| hypothetical protein DORFOR_00674 [Dorea formicigenerans ATCC
           27755]
          Length = 1077

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLIMKEKPDSVLPT 89

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G         ++      E      G  A  +   + R +   +   +    +    +
Sbjct: 90  LGGQAALNLAMELEERGFFKEHNVRLIGTTAQTIKKAEDRLEFKSTMEKIGEPCAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 ESVEDGIEFAEKIGYPVVLRPAYTLGGSGGGIAHDRRQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDAAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALNPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 92/293 (31%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   I         D D              V  ++   +PD A     G   
Sbjct: 590 AFAKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVESIVDLERPDGAVVQFGGQ-- 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    +++  C +P      +          
Sbjct: 648 TAIKLTEALMKMGVPILGTKAEDVDAAEDRELFDEILEKCQIPRPTGGTVFTAEEAKTVA 707

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    
Sbjct: 708 NRLGYPVLVRPSYVLGGQGMQIAINDNDIEEFIGIINQIAQDHPILVDKYLQGKEIEVDA 767

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V P   I     + ++       +++  
Sbjct: 768 VCDGEDILI----PGIMEHIERAGIHSGDSISVYPAKSISDKTKRTIEEYTRRLAKSLHV 823

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 824 IGLINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 870


>gi|317970260|ref|ZP_07971650.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CB0205]
          Length = 1097

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL   GF+V  +         D D +    +  L PD+               
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPDMADRTYIEPLTPDVVRRVIELERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    + + A   + D+   K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALSKDGTLEKYGVELIGANLEAIEKAEDRDLFKRAMGRIGVGVCPSGI 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +      L     +  +Q+LIE
Sbjct: 149 ATTLEEAEAVGDQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRAICLSGLDASPVNQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +   + D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDTADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVDTGGSNIQFAINPANGDVIVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E++  +
Sbjct: 327 LAVGYTLDEIINDI 340



 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/172 (11%), Positives = 56/172 (32%), Gaps = 7/172 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V++P        + V+  +  +   + ++ +      +LI+QY++       
Sbjct: 729 AERVGYPVVVRPSYVLGGRAMEVVYGEDELNRYMNEAVNVEPDHPVLIDQYLEN-ATEVD 787

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V          +     +       +S  ++  +    +  +    +++ +     A+  
Sbjct: 788 VDALCDATGKVVIGGLMEHIEPAGVHSGDSACALPSVSLEQEALATIRQWSEALALALQV 847

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            G+    F        V+ +E N +   T     P +A   G    ++   +
Sbjct: 848 NGLINLQFAI--KDGLVYIIEANPRASRT----VPFVAKATGAPLAKIASRI 893


>gi|282866205|ref|ZP_06275252.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. ACTE]
 gi|282558989|gb|EFB64544.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. ACTE]
          Length = 1102

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +L    +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHENGVLTKYGVELIGANVEAINKGEDRDLFKGVVEAVKAKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  DP   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVDPADGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|163759364|ref|ZP_02166450.1| acetyl-CoA carboxylase, biotin carboxylase protein [Hoeflea
           phototrophica DFL-43]
 gi|162283768|gb|EDQ34053.1| acetyl-CoA carboxylase, biotin carboxylase protein [Hoeflea
           phototrophica DFL-43]
          Length = 382

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 92/321 (28%), Gaps = 60/321 (18%)

Query: 19  GKACASALEDAGFKVSQID----------------------VDRSVGLVLAHL------- 49
                 A ++ G +   +                         R   L +  +       
Sbjct: 14  ALRVLRACKELGIQTVAVHSTADQDAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     IL+   I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKKTAEELGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---H 162
                I  +         I  P +IK   GG   G+ V   ++ + L L  + S      
Sbjct: 133 GSEGEITTDEEAARVAKDIGFPVIIKATAGGGGRGMKVANNEEELSLALSTARSEAGAAF 192

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G+  +  +   G      +      +    AV   +      +             +  D
Sbjct: 193 GNAAVYIEKYLGRPRHIEIQVLGDGEG--NAVHLGERDCSLQRRHQKVWEEANSPSLNED 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
              E+  +   A + +  RG    +FL+     K +++E+N +              +  
Sbjct: 251 QRMEIGEICASAMRKLRYRGAGTVEFLY--EDGKFYFIEMNTR----------LQVEHPV 298

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   +  AS
Sbjct: 299 TEAITGI---DLVNEQIRVAS 316


>gi|330937687|gb|EGH41585.1| Urea amidolyase-related protein [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 791

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
            H I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 157 AHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 216

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 217 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCI----AAVKLA 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 273 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 321

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 322 MVQLAAGD 329


>gi|308752486|gb|ADO45969.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Hydrogenobacter thermophilus TK-6]
          Length = 476

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 48/328 (14%), Positives = 105/328 (32%), Gaps = 65/328 (19%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP------------ 51
           EV+L        A ++ G +   I          V ++    L    P            
Sbjct: 13  EVALR----IIRACKELGIRTVAIYSEADARSLYVKKADESYLIPGDPVWAYLDYVRIVD 68

Query: 52  -------DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                  D      +G   E+       +   I +         +  DK+++K+++   G
Sbjct: 69  LAKSVGADAVHPG-YGFLAENAEFARFCQKRGITFIGPKPEHIEMFGDKVKAKKMMKKLG 127

Query: 105 VPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-- 158
           +P  P +          +     I  P ++K   GG   G+ V+K ++ +P         
Sbjct: 128 IPTVPGVEEPLKDPTDALHYAKEIGFPIILKSAYGGGGRGMRVVKSEKELPQLFESGYRE 187

Query: 159 ---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               +  GD  + +   +   +   ++GD   +V  +            K   +    VL
Sbjct: 188 AETFFGKGDLFIEKYLENPKHIEVQILGDKYGNVVHLGERDCSIQRKHQKVLEVTPCPVL 247

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P     ++  ++  L+  A   +G       +FL D    + +++E+N +          
Sbjct: 248 PK----EMRNKMLGLSVRAMMQVGYESAGTLEFLVDIKKGEFYFIEMNTR---------- 293

Query: 276 EMAAY------AGYSFRELLLWMVEDAS 297
               +      +G    +++  M+  A+
Sbjct: 294 LQVEHTITEMVSGV---DIVEQMIRVAA 318


>gi|255652138|ref|ZP_05399040.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-37x79]
          Length = 734

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|254977217|ref|ZP_05273689.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-66c26]
 gi|255316299|ref|ZP_05357882.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-76w55]
 gi|255518959|ref|ZP_05386635.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-97b34]
          Length = 702

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 100/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACQALKEEGIEVVLVNSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           +++  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELHDAGILDKYNVKVIGTSIESIKKGEDRDLFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I  P V++P       G  +   ++ +   L      +   Q+L+E+
Sbjct: 149 VTNLEAGLEFANKIGYPVVVRPAYTLGGTGGGIADTEEELREILSHGLQLSPVGQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +       ++  +        +  + Y+ +++ 
Sbjct: 209 SIKGWKEIEYEVMRDGNGNCITVCNMENVDP-VGVHTGDSIVVAPSQTLSDEEYQLLRKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AI  +G        +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SIDIINAIEVQGGCNVQIALNPHSLEYAIIEIN--PRVSRSS--ALASKATGYPIAKVAA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|21219984|ref|NP_625763.1| carbamoyl phosphate synthase large subunit [Streptomyces coelicolor
           A3(2)]
 gi|256788917|ref|ZP_05527348.1| carbamoyl phosphate synthase large subunit [Streptomyces lividans
           TK24]
 gi|289772804|ref|ZP_06532182.1| carbamoyl-phosphate synthase, large subunit [Streptomyces lividans
           TK24]
 gi|22095536|sp|Q9KXR6|CARB_STRCO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|8249942|emb|CAB93363.1| carbamoylphosphate synthetase large chain [Streptomyces coelicolor
           A3(2)]
 gi|289703003|gb|EFD70432.1| carbamoyl-phosphate synthase, large subunit [Streptomyces lividans
           TK24]
          Length = 1102

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 82/308 (26%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VL------------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L            HGN   +     ++                  + +   K++     
Sbjct: 89  TLGGQTALNTAISLHGNGVLEKYGVELIGANVEAINKGEDRDLFKEVVEEVRKKIGHGES 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   ++        L   P V++P       G      +  +     Q  + +   
Sbjct: 149 ARSYICHSMDDVLKGVDALGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 TLRDVGIAIIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|310823842|ref|YP_003956200.1| d-ala d-ala ligase domain-containing protein [Stigmatella
           aurantiaca DW4/3-1]
 gi|309396914|gb|ADO74373.1| D-ala D-ala ligase domain protein [Stigmatella aurantiaca DW4/3-1]
          Length = 374

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 109/275 (39%), Gaps = 21/275 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                L  ++PDL  N+      +   + +V  +L+++  PYT S  L+  L++ K ++K
Sbjct: 55  DFVDTLRRMQPDLVINLCESLAADSRGEIVVPGLLDMIGQPYTGSSALSLGLALHKPKAK 114

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDL 154
           +++ + G+      +V R        +  P ++KP    +S+G+    V++    +    
Sbjct: 115 ELLRARGISTPAFAVVKRLEDVKAVDLPYPLIVKPAHEDASMGVDFDSVVEGPAQLARAA 174

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG--------VMGDASLDVTEIAVPKSDFYSYELKY 206
            +  S  H    L+EQ++ G E+            +    +   +    + +  SY+ K+
Sbjct: 175 AEVLSTFH-QPALVEQFIRGREIYVPLLGNAPRRALPLTEIHFGQAFENRPNIVSYKAKW 233

Query: 207 SSLNSTHVLPAKIPL-----DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + +                D+   +   A  A  A+ C+   R D    P     + ++
Sbjct: 234 ETESPECRDSTSAVCRLEDADLEARLVHTAMEAFSALDCQDYGRVDLRVSP-DGVPYVID 292

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN    + P + F + A  AG  +  L   +VE A
Sbjct: 293 INPNCDLHPGAGFAKAALAAGIDYPALAAHLVEIA 327


>gi|296332545|ref|ZP_06875006.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305673826|ref|YP_003865498.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150463|gb|EFG91351.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305412070|gb|ADM37189.1| carbamoyl phosphate synthase large subunit [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 1030

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      S+  ++   +PD    
Sbjct: 29  SGTQGCIALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTAESLTAIIKKEQPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS     +  VP    
Sbjct: 89  NLGGQTALNLAVELEETGVLKEHGVKLLGTSVETIQKGEDREKFRSLMNELNQPVPESEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G  +    ++    + Q+   +  +Q L+E+
Sbjct: 149 VDNETDALRFAESIGFPVIIRPAYTLGGKGGGIAPNKEAFTAMIKQALLASPINQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +  D Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDDDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPFSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 89/294 (30%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L++ GF+   I+                         +  V      D A     G    
Sbjct: 585 LQELGFETIMINNNPETVSTDYEIADRLYFEPMTTEHILNVAEQENIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         + +  T    L      D+                         +    I
Sbjct: 645 NAAEALEKAGITLLGTSFETLDVLEDRDQFYQLLDELELNHAKGEIAYSKEEAAEKADEI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+I++     +   L    S  +   +LI+QYV G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMIIVDSQAQLSQLLNGEDSMPY--PILIDQYVSGKEVEIDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  +LP   I   + + ++  A    + +  +GI
Sbjct: 763 GEDVFI----PTYTEHIERAGVHSGDSFAILPGPSITNRLQQGIKDAAQKIARKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVPMIPLATRLLAGAS 866


>gi|167630179|ref|YP_001680678.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
 gi|167592919|gb|ABZ84667.1| carbamoyl-phosphate synthase, large subunit [Heliobacterium
           modesticaldum Ice1]
          Length = 1063

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 84/268 (31%), Gaps = 14/268 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  VLA  KP        G    +           I  T    + 
Sbjct: 602 DRLYFEPLL---SEDVVHVLAKEKPQGVIVQFGGQTAINLAGPLQKAGFNILGTSVDDID 658

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+            P   +       ++    I  P +++P        + ++  
Sbjct: 659 RAEDRDRFDQVLTELGITKPPGRTATSVEGALEVAREIGYPVLVRPSYVLGGRAMEIVYN 718

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   +  +   N    +L+++Y+ G E+    + D    +     P    +      
Sbjct: 719 DEDLESYMANAVKVNPEHPVLVDKYLIGTEIEVDAIADGEQVLI----PGIMEHVERAGV 774

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +ST V PA+    +    +          +  RG+    ++      +++ +E+N +
Sbjct: 775 HSGDSTAVFPAQGLTKEQTDRIIDYTTRLALHLNIRGVVNIQYVMHE--GQIYVIEVNPR 832

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              T     P ++   G    ++   ++
Sbjct: 833 SSRT----VPYLSKVTGIPIIKIATRII 856



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                       V  +L   +PD     
Sbjct: 20  GTQACGALREEGLEVILVNSNPATIMTDANIADRVYIEPLTPEFVTRILRKERPDGLLPT 79

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           L G         +     L E+     G   +A+   + R         +          
Sbjct: 80  LGGQVGLNIARSLAKSGVLDELGVRLLGTPLAAIEKAEDRELFKAMMEQIGEPVPESTIV 139

Query: 116 FTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
            ++++       +  P +I+P       G  +    +S+    ++    +   Q+L+E+ 
Sbjct: 140 ESVEAALAFGEKVGFPLIIRPAYTLGGTGGGIATDMESLKTYAIKGLKHSAIHQILVERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G                 I V   +       ++  +        +    Y+ ++  +
Sbjct: 200 VAGW-KEIEYEVIRDGADNCITVCNMENIDPVGVHTGDSIVVAPSQTLSDKEYQMLRTAS 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     +  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 259 LKIIRALGIEGGCNVQYALNPKSFEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 314

Query: 292 M 292
           +
Sbjct: 315 I 315


>gi|87200245|ref|YP_497502.1| carbamoyl phosphate synthase large subunit [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135926|gb|ABD26668.1| carbamoyl-phosphate synthase large subunit [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 1107

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGTQAVKALKEEGYRIILVNSNPATIMTDPDMAHATYVEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE   +    +   A   + D+ R ++ +   G+    S  
Sbjct: 89  TMGGQTALNTALALFNDGTLEKYGVQMIGANADAIDKAEDRQRFREAMDKIGLESARSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++       P +I+P       G  +    +     +      +   ++LIE+
Sbjct: 149 AHTIDEALEVLERTGLPSIIRPSFTMGGTGGGIAYNKEEFVKIVKGGLEASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEYEMEVVRDRKDNAIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +I+P        + ++     +   +  +   +    +LI+QY  D IE   
Sbjct: 741 ASRIGYPVLIRPSYVLGGRAMEIVDSQAQLDDYIATAVQVSGDSPVLIDQYLRDAIECDV 800

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +           ++  + P  +P +I  E++R A L  + + 
Sbjct: 801 DALADGDEVTVAGVMQHIEEAGIHSG---DSACTLPPYSLPAEIVAEMERQAVLLARGLD 857

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F       +V+ +E+N +   T     P +A   G    +    +
Sbjct: 858 VRGLMNIQFAV--KDGEVYLIEVNPRASRT----VPFVAKAVGQPIAKFAARI 904


>gi|5616190|gb|AAD45667.1|AF136925_1 D-alanine-D-serine ligase [Enterococcus faecalis]
          Length = 201

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/148 (25%), Positives = 75/148 (50%), Gaps = 5/148 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              +   P  IKP + GSS GI  +++   +   + ++S   +  ++LI++ V G+E+ C
Sbjct: 57  FAKIHGFPLYIKPNEAGSSKGISKVEQKSDLYKAIDEAS--KYDSRILIQKEVKGVEIGC 114

Query: 180 GV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           G+       +   +       F+ YE KY+ + +  +LPAK+ +D  +++Q  A   ++ 
Sbjct: 115 GILGNEQLVVGECDQISLVDGFFDYEEKYNLVTAEILLPAKLSIDKKEDIQIKAKKLYRL 174

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +GC+G++R DF       ++   EIN  
Sbjct: 175 LGCKGLARIDFFLT-DDGEILLNEINTL 201


>gi|2598551|emb|CAA03928.1| carbamoylphosphate synthetase [Lactococcus lactis subsp. cremoris
           MG1363]
          Length = 1064

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 81/267 (30%), Gaps = 12/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P +      G    +         ++I  T    L 
Sbjct: 606 DKLYFEPLTF---EDVMNVIDLEEPLVVIVQFGGQTAINLAEHLSKAGVKILGTQVEDLD 662

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D             P   +       + + + I  P +I+P        + +I  
Sbjct: 663 RAEDRDLFEKALQDLDIPQPPGATATNEEEAVANANKIGYPVLIRPSFVLGGRAMEIINN 722

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   + ++   +    +L++ Y+ G E     + D    +    +   +       +
Sbjct: 723 EKDLRDYMNRAVKASPEHPVLVDSYLQGQECEVDAICDGKEVLLPGIMEHIERAG---VH 779

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +   I   +          + C G+    F+      +V+ +E+N + 
Sbjct: 780 SGDSMAVYPPQNLSQAIIDTIVDYTKRLAIGLNCIGMMNIQFVIYEE--QVYVIEVNPRA 837

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMV 293
             T     P ++        +L   M+
Sbjct: 838 SRT----VPFLSKVTNIPMAQLATQMI 860



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G++V  ++ +                       V  +L   +PD     
Sbjct: 30  GTEACLALKEEGYEVVLVNSNPATIMTDREIADTVYIEPITLEFVSKILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     ILE L +    + + A   + D+   +      +  +      
Sbjct: 90  LGGQTGLNMAMELSKTGILEELNVELLGTKLSAIDQAEDRELFKELCESINEPLCASDIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P ++ P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVEEAINIADKIGYPIIVGPAFTMGGTGGGICDTEEELREIVANGLKLSPVTQCLIEES 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   + +     ++  +        +  + Y+ ++  +
Sbjct: 210 IAG-YKEIEYEVMRDSADNAIVVCNMENFDPVGVHTGDSIVFAPSQTLSDNEYQMLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIRALKIEGGCNVQLALDPNSYEYRVIEVN--PRVSRSS--ALASKATGYPIAKMSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|297155769|gb|ADI05481.1| carbamoyl phosphate synthase large subunit [Streptomyces
           bingchenggensis BCW-1]
          Length = 1103

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 85/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISLHEAGTLEKYGVELIGANVEAIHKGEDRDLFKDVVEAVRTKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVDQLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDIGIAVIREVGVDTGGCNIQFAVNPDDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|291541479|emb|CBL14589.1| carbamoyl-phosphate synthase large subunit [Ruminococcus bromii
           L2-63]
          Length = 1350

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/292 (14%), Positives = 89/292 (30%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C  AL+ AG+ V  ++                         V  ++    P        G
Sbjct: 575 CVWALKKAGYDVVIVNNNPETVSTDFDTADRLYFEPLTTEDVMGIIKTENPFGVVVAFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    +  A   ++            P   +++     +D 
Sbjct: 635 QTAIKLTKFLSDNGVNILGTSYDAIDMAEDRERFDELLEKYHIKRPRGVTVMTTDEALDV 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        +I+   +  +   +    + N  + +LI++Y+ G EL   
Sbjct: 695 ADKIGYPVLLRPSYVLGGQNMIIAFNEDDVKEYMAIILAQNIENPILIDKYLQGTELEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            + D    +     P    +       S +S  V PA    D   ++   +       + 
Sbjct: 755 AICDGEDILI----PGIMEHIERAGVHSGDSIAVYPAWNLSDRMTQIIIESSKNLAIELR 810

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G+    +L      +++ +E+N +   T     P ++   G    +L   
Sbjct: 811 TKGLVNIQYLI--YKDELYVIEVNPRSSRT----IPYISKVTGVPMVDLATR 856



 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      +V  ++   +PD   + 
Sbjct: 30  GTQACRALKEEGLEVILVNSNPATIMTDNAMADKIYIEPLTLETVKRIIKKERPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L+   +    +       + D+   K  +   G PV PS  +
Sbjct: 90  LGGQTGLTLSMQLAKEGFLDKYNVQLLGANPETIDKAEDRQLFKDTMIEIGQPVIPSLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +I+P       G  ++  ++ +          +   Q+L+E+ 
Sbjct: 150 TDVESAVKFADEIGYPVIIRPAFTLGGTGGGIVDNEEELREITSNGLELSPITQVLVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +F    +              +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVMRDSDGNVITVCSMENFDPVGVHTGDSIVIAPT-VTLADKEYQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G     F  +P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISALKVEGGCNCQFALNPETFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|164660366|ref|XP_001731306.1| hypothetical protein MGL_1489 [Malassezia globosa CBS 7966]
 gi|159105206|gb|EDP44092.1| hypothetical protein MGL_1489 [Malassezia globosa CBS 7966]
          Length = 2217

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  VL H +PD  + 
Sbjct: 428 SGSQAIKALKEEGIYTVLINPNIATIQTSAGLADKVYFLPVTPEFVLKVLRHERPDGIYC 487

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G    +  +    E  ++   + G     +   + R     +   +        S  
Sbjct: 488 TFGGQTALNVGIHLKDEFEKLGVLNLGTPIDTIIKTEDRDLFARAMEEIGERCAPSASAN 547

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + H I  P +++       LG    K +  +    L  +++ +  Q+L+E+ +
Sbjct: 548 TWDEALQAAHNIGFPVIVRAAFALGGLGSGFAKNEDELRR--LCHTAFANSPQVLVEKSM 605

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 606 RGW-KEVEYEVVRDCRDNCITVCNMENFDPLGVHTGDSIVVAPSQTLSDEDYNMLRTTAV 664

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 665 NVIRHLGVVGECNIQYALNPHSREYCIIEVNAR--LSRSS--ALASKATGYPLA 714


>gi|317133325|ref|YP_004092639.1| urea carboxylase [Ethanoligenens harbinense YUAN-3]
 gi|315471304|gb|ADU27908.1| urea carboxylase [Ethanoligenens harbinense YUAN-3]
          Length = 1198

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 61/186 (32%), Gaps = 24/186 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ V   +  +              + +    L +      
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMRVCSNETELHAAFESVRHLAAANFGNSGIFLEKYVPHAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + G AS +V  I            K         LP      + +++   A    
Sbjct: 207 HIEVQIFGSASGEVVAIGERDCSVQRRNQKVMEETPAPDLPQ----AVREDMHASAVRFA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    R     ++L+D   +  ++LE+N +     G+T            G    +L+ W
Sbjct: 263 RMAQYRSAGTVEYLYDKDEKTYYFLEVNTRLQVEHGVTE--------EVYGI---DLVEW 311

Query: 292 MVEDAS 297
           MV +A+
Sbjct: 312 MVLEAA 317


>gi|229820529|ref|YP_002882055.1| carbamoyl-phosphate synthase, large subunit [Beutenbergia cavernae
           DSM 12333]
 gi|259585677|sp|C5C687|CARB_BEUC1 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|229566442|gb|ACQ80293.1| carbamoyl-phosphate synthase, large subunit [Beutenbergia cavernae
           DSM 12333]
          Length = 1109

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLREEGLRVILVNSNPATIMTDPEFADATYVEPITPEVVASIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +         +L   ++    + I A  L+ D+ + K VV  CG     S  
Sbjct: 89  TLGGQTALNTAIALHEAGVLAEYDVELIGANIEAIHLAEDRDQFKGVVERCGAESARSHI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P V++P      LG  +   +  +         ++   ++L+E+
Sbjct: 149 AHTIEEVLEAARDLGYPLVVRPSFTMGGLGSGIAYDEADLRRIAGAGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELELMRDRNDNVVVVCSIENVDPVGVHTGDSITVAPALTLTDREYQRLRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPDTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|90417712|ref|ZP_01225624.1| acetyl-CoA carboxylase, biotin carboxylase [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337384|gb|EAS51035.1| acetyl-CoA carboxylase, biotin carboxylase [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 449

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 75/223 (33%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+  +I +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFADILDAHKITFIGPTAEHIRIMGDKIEAKRTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +  +         I  P ++K   GG   G+ V K  Q + + L  + S     +  
Sbjct: 135 AGAVTDDGEAARIAEEIGYPVIVKASAGGGGRGMKVAKTAQDLSMALSTARSEAGAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   V GD + +   +            +             +  +
Sbjct: 195 DAVYLEKYLEKPRHIEVQVFGDGAGNAIHLGERDCSLQ----RRHQKVWEEASSPALDQE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  +   A   +G RG    +FL+   + + +++E+N +
Sbjct: 251 QRDRIGMICANAIAKLGYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|56964318|ref|YP_176049.1| carbamoyl phosphate synthase large subunit [Bacillus clausii
           KSM-K16]
 gi|56910561|dbj|BAD65088.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Bacillus clausii KSM-K16]
          Length = 1049

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 97/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                      +V  +    KPD    
Sbjct: 28  SGTQGCLALKEEGIRVVLLNPNPATVMTDDSCADTVYFEPLSVETVVNIFEREKPDGLLA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G  G +       Q +L    +    + I +     D+ + + ++      VP    
Sbjct: 88  TLGGQTGLNLALKLHEQGLLAAYGVELLGTPIESIQKGEDREQFRALMHQLNEPVPDSEI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +        P +++P       G  +   ++ +   +    + +   Q LIE+
Sbjct: 148 VHSASEALRFAEQAGYPIIVRPAYTLGGAGGGIADCEKELKAIIENGLAQSPISQCLIEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +    Y+ ++  
Sbjct: 208 SIAG-FKEIEYEVMRDENDTCITVCNMENIDPVGIHTGDSIVVAPSQTLTDKDYQMLRAA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G     F  DP S + + +E+N  P ++  S     +   GY    +  
Sbjct: 267 SLKIIRALGIIGGCNIQFALDPNSDRYYLIEVN--PRVSRSS--ALASKATGYPIARMAA 322

Query: 291 WM 292
            +
Sbjct: 323 KL 324



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 85/286 (29%), Gaps = 31/286 (10%)

Query: 23  ASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGN 61
           A A+   G++   ++ +                       V  V A  +P+     L G 
Sbjct: 580 AKAVRKQGYEAIIMNNNPETVSTDYATADRLYFEPLSFEDVYAVCALEQPEGIIVTLGGQ 639

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            G   + +     L +    +  +       +  +             +           
Sbjct: 640 TGIKLVQELEEAGLPVLGVSADTIDMLEDRQRFYAFMNNIGVPHIPGETANDLEDACCRA 699

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
                P +++P       G+ ++  +  +   L           LLI+ +++GIE+   V
Sbjct: 700 KATGYPVLLRPSYVIGGQGMALVSSENELTSYLQNHEYSGLF-PLLIDHFIEGIEIDVDV 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D             +       +S  ++    P  +   +  +++  A      I  R
Sbjct: 759 LTDGKSIRIAGMFEHVEKAG---VHSGDSTAVTPPHTLSASMLAQLEEAAKKIATGIHFR 815

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           G+    F+      + + +E+N +   T     P +A   G  F E
Sbjct: 816 GLFNIQFVV--AGDRYYVIEVNPRASRT----VPLLAKIYGEPFVE 855


>gi|332673757|gb|AEE70574.1| carbamoyl-phosphate synthase, large subunit [Helicobacter pylori
           83]
          Length = 1085

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 91/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +     +  +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELVKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|148239765|ref|YP_001225152.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. WH
           7803]
 gi|147848304|emb|CAK23855.1| Carbamoylphosphate synthase large subunit [Synechococcus sp. WH
           7803]
          Length = 1107

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYEVVLVNSNPASIMTDPEMADRTYVEPLTPEVVTRVIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   I    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAENGTLERFGIELIGADLKAIRKAEDRQLFKQAMERIGVKVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSMDEAKAVGDSIGSFPRIIRPAFTLGGSGGGIAYNPEEFDAICKSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 KSLIGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P   +V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPADGEVVVIEMN--PRVSRSSALASKATGFPIAKIAAK 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|302875946|ref|YP_003844579.1| D-alanine--D-alanine ligase domain-containing protein [Clostridium
           cellulovorans 743B]
 gi|307686656|ref|ZP_07629102.1| D-alanine--D-alanine ligase [Clostridium cellulovorans 743B]
 gi|302578803|gb|ADL52815.1| D-alanine--D-alanine ligase domain protein [Clostridium
           cellulovorans 743B]
          Length = 346

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 117/296 (39%), Gaps = 26/296 (8%)

Query: 25  ALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLH---------GNFGEDGLVQAILE 73
           ALE  G  V  + V  +  +   + + + DL ++ ++          N  E   V  IL 
Sbjct: 28  ALESYGHWVVVLYVESNEELIRHIKYNEYDLVWSSIYYFTDNIKCINNINEKTCVMDILR 87

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPL 133
            + + Y  +        ++K ++ +++   G+      ++ + +   +   +  + +KP 
Sbjct: 88  EMGVAYVGANAEVMKNMINKKKTIELLEKYGLSTHQQYVLEKGSAIPKLDFTKKWFVKPC 147

Query: 134 KGG---SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT---CGVMGDASL 187
                       ++  ++ +   +      N+    L+E+Y+ G E T    G     ++
Sbjct: 148 FESESNGVSEKSIVHNEEELNERVQYILE-NYNQHALVEEYLSGDEYTTAIIGNKEKVTV 206

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
              +  V    +  Y +   +L +  +L  +IP D  +E+ +LA  A +A+G     R D
Sbjct: 207 LPIKNVVSSKAYERYPVITQNLKTDKMLSFEIPYDEMEELNKLAIEAAKALGVCDTVRID 266

Query: 248 FLFDPLSRKVFWLEINVQPGMTPV-SIFPEMAAYAG------YSFRELLLWMVEDA 296
              +  S +   +E+N  PG+ P+ S   E+            ++ EL+  +V  A
Sbjct: 267 IRKNE-SGEFRVIELNGIPGLNPIKSRIFEIYNLYNPQNSKEQNYAELVNKIVIAA 321


>gi|237809634|ref|YP_002894074.1| urea carboxylase [Tolumonas auensis DSM 9187]
 gi|237501895|gb|ACQ94488.1| urea carboxylase [Tolumonas auensis DSM 9187]
          Length = 1200

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 59/180 (32%), Gaps = 16/180 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      + +          +  +      +++       
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMQRCFSAEELTSAYASVKRLSENNFSNGGMFLEKFIENAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V          +  +       PA     D+ + +Q  A    Q + 
Sbjct: 207 HIEVQMFGDGQGKVIAIGERDCSAQRRNQKVIEECPAPNLSDDVRQALQATAVQLGQQVC 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     ++++D LS + ++LE+N +     G+T            G    +L+ WM+E 
Sbjct: 267 YRSAGTVEYVYDDLSGQFYFLEVNTRLQVEHGVTE--------QVYGV---DLVRWMIEL 315


>gi|119478298|ref|ZP_01618329.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
 gi|119448638|gb|EAW29883.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [marine gamma proteobacterium HTCC2143]
          Length = 674

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++DR +      L  D      +G   E+  +    E  +I +     L+      K  
Sbjct: 82  LNIDR-IIRSAKELGVDAIHPG-YGFLAENAAMADACERNDIVFIGPTALSMKAVASKQH 139

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++Q+V S  +P  P     +  +   +     I  P ++K   GG  +G+ +++    + 
Sbjct: 140 ARQLVDSLSLPTIPGLNRLVSYSDEFVAQCEAIGFPVLLKATAGGGGVGMRIVEHGDDLQ 199

Query: 152 LDLL-----QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                       ++  G  ++ +   +   L   V+ D       +            K 
Sbjct: 200 AAFEAVSRESQQAFGDGGIIVEKYLANARHLEVQVLADHYGHCVHLHERDCSIQRRRQKI 259

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   +LPA     I + +   A    + I  RG    +FL+ P  ++ ++LE+N +
Sbjct: 260 VEESPARLLPAG----IKQSLCDTAVAIAKHINYRGAGTVEFLYSPEHQQFYFLEMNTR 314


>gi|110680549|ref|YP_683556.1| pyruvate carboxylase [Roseobacter denitrificans OCh 114]
 gi|109456665|gb|ABG32870.1| pyruvate carboxylase [Roseobacter denitrificans OCh 114]
          Length = 1146

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+++  +   +L+            E Y++ + L   
Sbjct: 151 AKEIGYPLMLKASWGGGGRGMRPIQQEDELEEKVLEGRREAEAAFGNGEGYLEKMILKAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      +         ++  +       PA    +    EV +L +   + + 
Sbjct: 211 HVEVQILGDKHGDMYHLFERDCSVQRRNQKVVERAPAPYLTEAQRAEVCKLGYDICKHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    K +++E+N +
Sbjct: 271 YECAGTVEFLMDMDDGKFYFIEVNPR 296


>gi|24213427|ref|NP_710908.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45658713|ref|YP_002799.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|73917672|sp|Q72NF1|CARB_LEPIC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|73917673|sp|Q8F832|CARB_LEPIN RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|24194193|gb|AAN47926.1| carbamoyl phosphate synthase large subunit [Leptospira interrogans
           serovar Lai str. 56601]
 gi|45601957|gb|AAS71436.1| carbamoyl-phosphate synthase large chain [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
          Length = 1106

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 96/298 (32%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE   +    + + A   + D+   K+ +   GV V  S  
Sbjct: 89  TVGGQTALNLALACNSAGILEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  ++ ++ +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLKDAVEIKNKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPQQTLSDKEYQNLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IAIIREIGVETGGSNIQFAVNPTNGDVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 36.8 bits (83), Expect = 3.6,   Method: Composition-based stats.
 Identities = 29/267 (10%), Positives = 85/267 (31%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  +  + KP+       G            + ++I  T    + 
Sbjct: 642 DRLYFEPLTL---EDVYRIYQNEKPEGVIIQFGGQTPLKLAKDLEKKGVKILGTSPDSID 698

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P            +  H I  P +++P        +++I +
Sbjct: 699 RAEDRKRFVEVLEKLKLNSPESGIATSMEEAREIAHKIGYPVLVRPSYVLGGRAMLIINE 758

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   + ++   +    LLI+ +  D IE+    + D         +   +       
Sbjct: 759 EKELDRYMEKAEEISKDRPLLIDSFLEDAIEVDVDALCDGKEVFVTGIMEHIEEAGIHSG 818

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +  ++  E+++        +  +G+    +     +  ++ +E+N +
Sbjct: 819 ---DSACVLPPQTLSKNMMDEIRKATVNLALELQVKGLINIQYAV--KNEILYIIEVNPR 873

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P ++   G+   +    +
Sbjct: 874 ASRT----VPFVSKALGHPIVKYATRI 896


>gi|329946659|ref|ZP_08294071.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 170 str. F0386]
 gi|328526470|gb|EGF53483.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 170 str. F0386]
          Length = 1119

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIRVILVNSNPATIMTDPDVADATYIEPITPEVLTTIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +    + +L+  ++    +   A     D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNAAMSLVERGVLDEYDVELIGASAAAINAGEDRDEFKDVVERCGAEVARSVI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P V++P      LG  V   D  +        + +   ++L+E
Sbjct: 149 AHTMDECRAGVDALGGYPVVVRPSFTMGGLGSGVAFNDADLHRIAGAGLAASRTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   +     +     +      +          ++ +    
Sbjct: 209 ESILGWKEYELELMRDTADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDRELQRLRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIREVGVDTGGCNIQFAVDPATGRIVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|291484439|dbj|BAI85514.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. natto BEST195]
          Length = 444

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++K   GG  +G+  ++ ++++      +             Y++ +  
Sbjct: 145 CRTACQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGSMYIEKVIE 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
               +    L                ++          P   +  ++  ++ + A  A +
Sbjct: 205 HARHIEVQLLADQHGHTVHLFERDCSVQRRHQKVIEEAPSPFVDDELRMKIGQTAVKAAK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AIG       +F+ D      ++LE+N +
Sbjct: 265 AIGYTNAGTIEFIVDQKQN-FYFLEMNTR 292


>gi|94310580|ref|YP_583790.1| pyruvate carboxylase [Cupriavidus metallidurans CH34]
 gi|93354432|gb|ABF08521.1| pyruvate carboxylase [Cupriavidus metallidurans CH34]
          Length = 1167

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   V  +    K D      +G   E+      +    I +         +  +K+ 
Sbjct: 66  LDI-EDVLRIARQAKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPEVMRMLGNKVA 123

Query: 96  SKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           ++    + GVPV P+                 I  P ++K   GG   G+ V++ +Q + 
Sbjct: 124 ARNAAIAAGVPVMPATDPLPLDLAECKRLAAGIGYPLMLKASWGGGGRGMRVLESEQDLE 183

Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                      +++ + +  L +   +   +   ++GD   ++  +            K 
Sbjct: 184 PSLAAARREALAAFGNDEVYLEKLVRNARHVEVQILGDTHGNLVHLHERDCTVQRRNQKV 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   + A     +     RL       +G       +FL D  + K +++E+N +
Sbjct: 244 IERAPAPYMDAAGRASLCDAALRLMGA----VGYSHAGTVEFLMDADTNKFYFIEVNPR 298


>gi|329938930|ref|ZP_08288304.1| carbamoyl phosphate synthase large subunit [Streptomyces
           griseoaurantiacus M045]
 gi|329301815|gb|EGG45708.1| carbamoyl phosphate synthase large subunit [Streptomyces
           griseoaurantiacus M045]
          Length = 1102

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+ + K VV      +     
Sbjct: 89  TLGGQTALNTAISLHENGVLEKYGVELIGANVEAIHKGEDRDQFKLVVEEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   +          P V++P       G      ++ +        + +   
Sbjct: 149 ARSVICHTMDDVLAGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGTGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P+  +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 ILRDMGIAIIREVGVDTGGCNIQFAVNPVDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|302541088|ref|ZP_07293430.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           hygroscopicus ATCC 53653]
 gi|302458706|gb|EFL21799.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           himastatinicus ATCC 53653]
          Length = 1103

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/308 (11%), Positives = 83/308 (26%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILE----------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
            L G    +  +               +       +      L  D + +       G  
Sbjct: 89  TLGGQTALNTAISLHEAGTLDEYGVELIGANVEAINKGEDRDLFKDVVEAVNAKIGHGES 148

Query: 107 VCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
               I  +   +    + L   P V++P       G      +  +     Q  + +   
Sbjct: 149 ARSYICHSMDDVLAGVEELGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLNLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDIGIAVIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAARL 332


>gi|83589733|ref|YP_429742.1| carbamoyl-phosphate synthase large subunit [Moorella thermoacetica
           ATCC 39073]
 gi|83572647|gb|ABC19199.1| carbamoyl-phosphate synthase large subunit [Moorella thermoacetica
           ATCC 39073]
          Length = 1063

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++        DR               V  ++   +PD     
Sbjct: 20  GTQACRALKEEGMEVVLVNSNPATIMTDRDMADRVYLEPLTLDFVAKIVRQERPDGLIPT 79

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           +E+  T    +  A   ++ +   +     VP    +
Sbjct: 80  LGGQMGLNLAMELAEAGVLEETGVELLGTPLTAIQRAEDREQFKEMMLAIDEPVPESRIV 139

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  V   +  +    L+    +   Q+L+E+ 
Sbjct: 140 NRVEEALEFAREIGYPVIVRPAYTLGGTGGGVAHNEAELRSIALKGLKLSLIQQVLVERS 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +     +                 + Y  ++R A
Sbjct: 200 VAGWKEIEYEVIRDSNDNCITVCNMENIDPVGIHTGDSIVVAPSQTLSDRE-YHLLRRSA 258

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY    +   
Sbjct: 259 LKIIRALGIEGGCNVQFALDPGSMRYYVIEVN--PRVSRSS--ALASKATGYPIARVATK 314

Query: 292 M 292
           +
Sbjct: 315 I 315



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/327 (15%), Positives = 100/327 (30%), Gaps = 53/327 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           +AVL  G        +  G+           A AL  AG     I         D D S 
Sbjct: 546 VAVLGAGP-------IRIGQGIEFDYCSVHAAWALRRAGVHPIMINNNPETVSTDFDTSD 598

Query: 43  GLVLAHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALS 90
            L    L P+   NVL             G    +           +  T    +  A  
Sbjct: 599 RLYFEPLTPENVLNVLEKEQPEGVIVQFGGQTAINLAQTVAGAGFPVLGTAVVDIDRAED 658

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            +K  +         P   +       +     +  P +++P        + ++  +  +
Sbjct: 659 REKFDALLNELGIPRPRGGTATSVGEVVKIAKELGFPVLVRPSYVLGGRAMEIVHSEGEL 718

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                 +        +L+++Y+ G E+    + D    +     P    +       S +
Sbjct: 719 LEYATTAVRVAPEHPVLVDKYLPGTEVEVDAVSDGETVLI----PGIMEHVERAGVHSGD 774

Query: 211 STHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----V 264
           S  + PA   P  + +++        +A+  RG+    F+      +V+ LE+N      
Sbjct: 775 SIAIYPAHSLPPGVTEKIVAYTEQLARALRVRGLLNIQFVIHR--GEVYVLEVNPRSSRT 832

Query: 265 QPGMTPVSIFPEMAAYA----GYSFRE 287
            P ++ ++  P +A       G S  E
Sbjct: 833 VPYLSKITGVPMVALATNVMLGKSLPE 859


>gi|77407252|ref|ZP_00784209.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
 gi|77174139|gb|EAO77051.1| carbamoyl-phosphate synthase, large subunit [Streptococcus
           agalactiae H36B]
          Length = 353

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/256 (12%), Positives = 83/256 (32%), Gaps = 13/256 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   KP+       G    +         ++I  T    L 
Sbjct: 18  DKLYFEPLTF---EDVMNVIDLEKPEGVILQFGGQTAINLAKDLNKAGVKILGTQLEDLD 74

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A +  +  +     +   P   +       +++   I  P +++P        + +++ 
Sbjct: 75  RAENRKQFEATLQALNIPQPPGFTATTEEEAVNAAQKIGYPVLVRPSYVLGGRAMKIVEN 134

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +   +  +   +    +LI+ Y+ G E     + D    +    +   +       +
Sbjct: 135 EEDLRHYMTTAVKASPDHPVLIDAYLIGKECEVDAISDGQNILIPGIMEHIERAG---VH 191

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN--- 263
           S  +     P  +   I + +          + C G+    F+     +KV+ +E+N   
Sbjct: 192 SGDSMAVYPPQTLSETIIETIVDYTKRLAIGLNCIGMMNIQFVI--KDQKVYVIEVNPRA 249

Query: 264 --VQPGMTPVSIFPEM 277
               P ++ V+  P  
Sbjct: 250 SRTLPFLSKVTHIPMA 265


>gi|325068827|ref|ZP_08127500.1| carbamoyl-phosphate synthase, large subunit [Actinomyces oris K20]
          Length = 1119

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 96/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIRVILVNSNPATIMTDPDVTDATYIEPITPEVLTTIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +    + +L+  ++    +   A     D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNAAMSLVERGVLDEYDVELIGASAAAINAGEDRDEFKDVVERCGAEVARSVI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        + +    P V++P      LG  V   D  +        + +   ++L+E
Sbjct: 149 AHTMDECRAGVNALGGYPVVVRPSFTMGGLGSGVAFNDSDLHRIAGAGLAASRTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   +     +     +      +          ++ +    
Sbjct: 209 ESILGWKEYELELMRDTADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDRELQRLRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIREVGVDTGGCNIQFAVDPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|312132199|ref|YP_003999539.1| d-alanine--d-alanine ligase [Leadbetterella byssophila DSM 17132]
 gi|311908745|gb|ADQ19186.1| D-alanine--D-alanine ligase [Leadbetterella byssophila DSM 17132]
          Length = 585

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 85/269 (31%), Gaps = 66/269 (24%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV--------------- 45
           + +  GG S ERE+S   G+     L+   F+   I VD     +               
Sbjct: 7   VGIFFGGQSREREISFLGGRTAYEHLDKRFFEPVLIFVDSLGNFIHVEPSILNEADIRSF 66

Query: 46  -------------LAHLKP--------------------------DLAFNVLHGNFGEDG 66
                        +  L P                          D AF V+HG   EDG
Sbjct: 67  YPSKNQNNGYKVYIESLGPLKVSQLYKLIYKIGSQVKIEELKSYMDFAFVVMHGPSAEDG 126

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH---- 122
            +Q +LE L IPY   GIL SA+ ++K    ++++         + +++   ++      
Sbjct: 127 SIQGLLEWLNIPYLGPGILGSAVGINKPFQNKLMAYATGQEKKYLTISKREWNTSDRSKL 186

Query: 123 ------LISPPYVIKPLKGGSSLGIIV--IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                  +  P+V+K    GSS+G+ +   +  +     + Q        +   ++    
Sbjct: 187 FSSVIAKLGFPFVVKAPHQGSSIGVAIVRKRSLEEFSKAMSQCFFETFITKKEWDKLSPR 246

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +           +     V       Y 
Sbjct: 247 RKKNVMEKMSNLDEGIGFPVVLDGEQIYH 275



 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/269 (17%), Positives = 91/269 (33%), Gaps = 14/269 (5%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLH-GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           D  +    V+A L         H G+     +V+                 + ++  +  
Sbjct: 182 DRSKLFSSVIAKLGFPFVVKAPHQGSSIGVAIVRKRSLEEFSKAMSQCFFETFITKKEWD 241

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                    +       V     +    I  P V+   +      ++    +     ++ 
Sbjct: 242 K--------LSPRRKKNVMEKMSNLDEGIGFPVVLDGEQIYHPATLLKKLDEYLTQHEVA 293

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----FYSYELKYSSLNS 211
           Q +S N  D +LIE+++ G E +CGV+ D    V  +   +       + ++ KY S  S
Sbjct: 294 QLNSVNGEDYVLIEEFISGQEFSCGVIQDDEGRVLPLPPAEVYGETATFDFKAKYKSTVS 353

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
              +P K      +++      A +A G   I R D         V   + N  PGM+P 
Sbjct: 354 KKRIPVKTSDANLEKIHEDVLKAFEATGMSVICRIDGFITE-DDVVVLHDPNTLPGMSPS 412

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           S   +  A  G++    L + +  +   R
Sbjct: 413 SFIFKQMAEVGFNITNSLTYFIRQSLIER 441


>gi|255518962|ref|ZP_05386638.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-97b34]
          Length = 779

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|255316302|ref|ZP_05357885.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-76w55]
          Length = 829

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|255102806|ref|ZP_05331783.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-63q42]
          Length = 774

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|255094547|ref|ZP_05324025.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           CIP 107932]
 gi|255652142|ref|ZP_05399044.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-37x79]
          Length = 734

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 98/318 (30%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEVADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  +   ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIADNEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|145237730|ref|XP_001391512.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA) [Aspergillus
           niger CBS 513.88]
 gi|134075986|emb|CAK48180.1| unnamed protein product [Aspergillus niger]
          Length = 709

 Score = 58.0 bits (138), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 95/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  A      G +V+ +  D       A   P  AFN+               
Sbjct: 49  EIALRVGRTAAQH----GIRVTTLYTDPDSKAQHALSSP-FAFNLGSVSAYLDGDRIIEI 103

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK +SK+++++ GVP
Sbjct: 104 AKKEGCQGIHPGYGFLSENAAFARKCTEAGLVFIGPFWKAIEDMGDKSQSKKIMTAAGVP 163

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P    +   ++        I  P +IK +KGG   G+ +          L        
Sbjct: 164 CVPGYHGDNQDVNFLEAEADKIKYPVLIKAIKGGGGKGMRIAHTKADFQAQLQSAKSEAM 223

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 224 NSFGDDHVLVEKYITTPRHIEVQVFADKQGNAVALGERDCSIQRRHQKILEESPAPHLPD 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 284 ATRKDIWAKARSAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 327


>gi|292670823|ref|ZP_06604249.1| carbamoyl-phosphate synthase [Selenomonas noxia ATCC 43541]
 gi|292647444|gb|EFF65416.1| carbamoyl-phosphate synthase [Selenomonas noxia ATCC 43541]
          Length = 1075

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 103/301 (34%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  +L+  KPD     
Sbjct: 30  GSQACRALKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLEEILSKEKPDGLLAT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ           +E+  T    +  A   ++ +         +P    +
Sbjct: 90  LGGQAGLNLAVQLAEKGILEQHGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              R  ++  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 150 EDVRSAVEFANSIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEFEVIRDGNDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  D +S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELGIEGGCNAQYALDTMSDKYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 80/262 (30%), Gaps = 26/262 (9%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I           D+             V  ++   KPD       G   
Sbjct: 582 ALREMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVDKEKPDGIIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +   +     L I  T    +  +   ++       +    P   S+      +     
Sbjct: 642 INLAAELERAGLRIYGTSVNDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAIAGAER 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  ++ +   + ++        +L+++Y+ G E+    + 
Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEEELRDYMGRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +           +     P  +P  +   +         A+  +G+
Sbjct: 762 DGVDVVIPGIMEHIERAGIHSG---DSIAVYPPQTLPARVIYTIIDYTKRLAVALHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
               F+      +VF +E+N +
Sbjct: 819 LNIQFVVVR--DEVFIIEVNPR 838


>gi|83308712|emb|CAJ01622.1| pyruvate carboxylase, mitochondrial precursor (ec 6.4.1.1)
           [Methylocapsa acidiphila]
          Length = 1147

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 70/231 (30%), Gaps = 6/231 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +    K D      +G   E            I +            +K+ ++ +
Sbjct: 67  DDVIHIAREAKVDAIHPG-YGFLSESPEFAEACAAAGIVFIGPSPQTMRALGNKVAARNL 125

Query: 100 VSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             SCGVPV P+                 I  P ++K   GG   G+  I+ +  +   + 
Sbjct: 126 AVSCGVPVMPATPPLPDDPASVKRLAREIGYPVMLKASWGGGGRGMRPIESEDKLLEAVT 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +           E Y++ +      +    L      +         ++  +       
Sbjct: 186 SAKREAKSAFGKDEVYLEKLVRRARHVEVQILGDAHGELVHLFERDCSIQRRNQKVVERA 245

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA    +     +   A    +A G  G    +FL D  S   +++E+N +
Sbjct: 246 PAPYLDEATRGALCEAALKIGRATGYVGAGTVEFLLDAESGGFYFIEVNPR 296


>gi|312869887|ref|ZP_07730026.1| carbamoyl-phosphate synthetase, large subunit, oligomerization
           domain protein [Lactobacillus oris PB013-T2-3]
 gi|311094472|gb|EFQ52777.1| carbamoyl-phosphate synthetase, large subunit, oligomerization
           domain protein [Lactobacillus oris PB013-T2-3]
          Length = 832

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/286 (12%), Positives = 98/286 (34%), Gaps = 20/286 (6%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFG----EDGLVQ 69
           VSL S       ++ +  +   +D   ++  V+   KP      L         +  + +
Sbjct: 52  VSLES----HDVIDHSCVEALTVD---NLMAVINRYKPHAILPTLGNRRAFGLTQKLMDK 104

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPP 127
            +L    I              + +   + + S   P+    ++   +  +   + +  P
Sbjct: 105 GVLREKGIRLLGIPEATIHQINNPVLLSRTLHSMDAPMKSIATVNNYQDALQEANRLGYP 164

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            +I+ +   SS    ++   + +   + +    +  +Q+L++Q + G      VM     
Sbjct: 165 VIIRSVLPKSSSTRRIVHDRRELATAVQRCLKQSRAEQVLVQQSLAG-YKEIEVMVQRDQ 223

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             T + +   +       ++  +     P  +     ++++  AF   + +   G++   
Sbjct: 224 SGTMMMLAMVEDMDPIGIHAGDSIAFNPPQTLLDRQIQDMRDTAFAITRKLRIVGVNHVQ 283

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
           F  +P + + + ++ N  P      S     A   GY   ++   +
Sbjct: 284 FALNPANDRFYVIK-N-SPYFDRMTSFV---AQSTGYPIAKVCAQL 324


>gi|212716690|ref|ZP_03324818.1| hypothetical protein BIFCAT_01624 [Bifidobacterium catenulatum DSM
           16992]
 gi|212660394|gb|EEB20969.1| hypothetical protein BIFCAT_01624 [Bifidobacterium catenulatum DSM
           16992]
          Length = 631

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 69  LIDILQRSGADAVHPG-YGFLSEVASFAQKVIDAGAAWVGPNPEALVDLGDKITARRVAT 127

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI ++  D  +    +  
Sbjct: 128 FAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNH 187

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      D+  + T  +           K         
Sbjct: 188 DALQGGDLNEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQRRNQKLVEEAPAPF 247

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP+    D+  +++  +    +A+   G+   +F+      KV++LE+N +
Sbjct: 248 LPS----DVTDQLETYSRRLFEAVDYEGLGTCEFMVTEQ-GKVYFLEVNPR 293


>gi|156938186|ref|YP_001435982.1| carbamoyl phosphate synthase large subunit [Ignicoccus hospitalis
           KIN4/I]
 gi|156567170|gb|ABU82575.1| carbamoyl-phosphate synthase large subunit [Ignicoccus hospitalis
           KIN4/I]
          Length = 1047

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S      AL + G +   ++ +                       +  ++   +PD    
Sbjct: 26  STSQALKALREEGIETILVNPNVATVQTTKEMSDKLYFVPLRRDILEKIIEAERPDGILI 85

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G              +L+   +    + I     + DK    + +   G+P+ PS  
Sbjct: 86  GFGGQTALTLGVELWESGVLQKYGVKVIGTPIEGIKKATDKTLFAKTMKENGIPMPPSEA 145

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P +++        G  +    + +   ++++ + +   ++L+E+
Sbjct: 146 ASNVDEALEIAERLGYPVIVRIAFTLGGKGSFIAWNRRELEKWVVRAFAQSAVGRVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+                   +AV   +       ++  +        +    Y+ ++  
Sbjct: 206 YLHHW-KEIEFEVVRDAYNNSVAVACLENLDPMGVHTGDSVVIAPCQTLTNREYQILRDA 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + IG  G        DP     + +E N  P M+  S     +   GY    +  
Sbjct: 265 SIRVAEVIGLVGEGNVQLALDPRGETYYVIETN--PRMSRSS--ALASKATGYPLAYVAA 320

Query: 291 WM 292
            +
Sbjct: 321 KL 322



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 98/312 (31%), Gaps = 41/312 (13%)

Query: 7   GISSERE---VSLSSGKACASALED--------AGFKVSQI--DVDRS------------ 41
           GIS E +   VSL        +L            +    +  D D S            
Sbjct: 550 GISVEFDWAVVSLV------RSLRKYGAEEVITLNYNPETVSTDWDESDKLYFEEITEET 603

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  V+   +P        G        +     + +  T    + +A    K        
Sbjct: 604 VYKVVEKERPWGVIAFAGGQIANKIYKKIEALGVPLLGTPGRSVDTAEDRKKFSDLLDKL 663

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   P   S             +  P +++P    S   + V+   + +   + ++S  +
Sbjct: 664 NIKQPRWVSASSMEELKKFVDEVGFPVIVRPSYVLSGSAMKVVWSWEELVEFVRKASEVS 723

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               +++ ++  G           ++  +   V     +       S +ST V PA++  
Sbjct: 724 REHPVVVSEFFVG----AREAEVDAVSDSASVVAVPLSHVEPAGVHSGDSTMVTPARLED 779

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++  ++  ++    + +  RG     FL    +   + +E+N++      S+ P  +   
Sbjct: 780 EVVNKMLDISLTLARELEIRGPFNIQFLV--KNNDPYVIELNLR---ASRSM-PFSSKSR 833

Query: 282 GYSFRELLLWMV 293
             +  EL   +V
Sbjct: 834 NVNLMELSAKVV 845


>gi|327405801|ref|YP_004346639.1| carbamoyl-phosphate synthase large subunit [Fluviicola taffensis
           DSM 16823]
 gi|327321309|gb|AEA45801.1| carbamoyl-phosphate synthase, large subunit [Fluviicola taffensis
           DSM 16823]
          Length = 938

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G   A +L D G +V+ I+ +                      S+  +L + K D     
Sbjct: 30  GSQAARSLRDEGIEVTLINSNPATIMTDKVVADNIYLQPLEPESIIEILKNHKIDAVLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPSI 111
           + G    +  ++       E   +      I A  ++ ++   + ++    VP+    + 
Sbjct: 90  MGGQTALNLAIKCDEMGIWEEYGVDIIGVDIAAIEITENREAFRMLMQEIDVPMAPQATA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +       P  I+P       G  ++   +     L +    +   +++I++ 
Sbjct: 150 KSFLEGKEIAQEFGFPLCIRPSYTLGGSGASIVYDPKEFDGLLERGLQLSPIHEVMIDKA 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   I     +F    +      +             +      
Sbjct: 210 LLGWKEYELELLRDANDNVVIICSIENFDPMGIHTGDSITVAPAMTLSDTTFQRMRDMAI 269

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
            +        G     F   P   + +  +EIN  P ++  S     +   GY   ++  
Sbjct: 270 KMMRSIGNFAGGCNVQFAVSPDENEDIIAIEIN--PRVSRSS--ALASKATGYPIAKIAS 325

Query: 291 WM 292
            +
Sbjct: 326 KL 327



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 95/307 (30%), Gaps = 40/307 (13%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39
            V++G      G   E + S        +A ++ G++   I         D D       
Sbjct: 559 VVVLGSGPNRIGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYF 615

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  +  ++ H KP+     L G        +     ++I  T    L  A    + 
Sbjct: 616 EPVFWEHIYDIIQHEKPEGVIVQLGGQTALKLAEKLERFGIKILGTSFDALDLAEDRGRF 675

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 ++   P    +      ++    +  P +++P        + ++   + +   +
Sbjct: 676 SKLLEKNNIPFPKYGIVESAEQAIELSKDLGFPLLVRPSYVLGGQKMKIVINKEELEHHV 735

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +   +    +Q+L++ ++ G IE     + D         +   +           +   
Sbjct: 736 VDIINEMGSNQILLDHFLGGAIEAEADAICDGEDVYIIGVMQHIEPAGIHSG---DSYAV 792

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P  +   + ++++ +       +   G+    F       KV+ +E N +   T    
Sbjct: 793 LPPYNLGDFVMQQIEDITRKIAVELRTVGLINIQFAI--KDDKVYVIEANPRASRT---- 846

Query: 274 FPEMAAY 280
            P +A  
Sbjct: 847 VPFIAKA 853


>gi|317009576|gb|ADU80156.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           India7]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELCHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----MPFLSKALGVPLAKVATR 868


>gi|315122826|ref|YP_004063315.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
 gi|313496228|gb|ADR52827.1| acetyl-CoA carboxylase biotin carboxylase subunit [Candidatus
           Liberibacter solanacearum CLso-ZC1]
          Length = 446

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/209 (16%), Positives = 74/209 (35%), Gaps = 4/209 (1%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRF 116
           +G   E+     ILE   I +         +  DK+ +K+     G+PV P    +  R 
Sbjct: 82  YGFLSENAKFAEILEAHNIKFIGPSSEHIKIMGDKITAKETAQKLGIPVVPGSGEICVRT 141

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M     I  P ++K   GG   G+ +   ++++   + Q+ S +         Y++   
Sbjct: 142 AMPIAQKIGFPVLVKASAGGGGRGMRIAHSEKNLIEAINQARSESLSAFGSDAVYIEKYL 201

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                +        +            ++  +        + I      E+  +   A +
Sbjct: 202 KKPRHIEIQIFGDGKGNAIHFGERDCSVQRRNQKIWEEAHSLISAQDRAEIGEICVQAMK 261

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            I  RG    +FL+   + + +++E+N +
Sbjct: 262 KIEYRGAGTVEFLY--ENGQFYFIEMNTR 288


>gi|326773309|ref|ZP_08232592.1| carbamoyl-phosphate synthase, large subunit [Actinomyces viscosus
           C505]
 gi|326636539|gb|EGE37442.1| carbamoyl-phosphate synthase, large subunit [Actinomyces viscosus
           C505]
          Length = 1119

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIRVILVNSNPATIMTDPDVADATYIEPITPEVLTTIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +    + +L+  ++    +   A     D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNAAMSLVERGVLDEYDVELIGASAAAINAGEDRDEFKDVVERCGAEVARSVI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P V++P      LG  V   D  +        + +   ++L+E
Sbjct: 149 AHTMDECRAGVDALGGYPVVVRPSFTMGGLGSGVAFNDSDLHRIAGAGLAASRTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   +     +     +      +          ++ +    
Sbjct: 209 ESILGWKEYELELMRDTADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDRELQRLRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIREVGVDTGGCNIQFAVDPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|217034399|ref|ZP_03439813.1| hypothetical protein HP9810_884g4 [Helicobacter pylori 98-10]
 gi|216943130|gb|EEC22602.1| hypothetical protein HP9810_884g4 [Helicobacter pylori 98-10]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++     D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQREHVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|322697310|gb|EFY89091.1| methylcrotonoyl-CoA carboxylase alpha chain precursor [Metarhizium
           acridum CQMa 102]
          Length = 673

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A A   +K RSK+++++  VP  P    
Sbjct: 103 ALHPGYGFLSENSQFAEKCEREGIVFVGPPATAMADMGNKARSKEIMTAANVPCVPGYHG 162

Query: 114 ----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +  +     I+ P ++K ++GG   G+ ++  +      L  + +          
Sbjct: 163 AEQGEQELLQHAKDITFPVLLKSVRGGGGKGMRIVMTEDEFMAQLKSARAEARASFGEGG 222

Query: 170 QYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
           + +   +              +              ++          PA    +   ++
Sbjct: 223 EVMLVEKYIVRPRHVEVQVFADKHGNTAALGERDCSVQRRHQKVLEESPAPDLDEATRRD 282

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+G  G    +F+ D  S K +++E+N +
Sbjct: 283 LWDKARKAASAVGYVGAGTVEFILDKDSGKFYFMEMNTR 321


>gi|71405261|ref|XP_805264.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868604|gb|EAN83413.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 61/189 (32%), Gaps = 21/189 (11%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYV 172
            +    I  P +IK + GG   G+ ++K      L L        + +     +L     
Sbjct: 155 CEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDRVILERYVT 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               + C +  D   +                +             I  D+   +  ++ 
Sbjct: 215 QPRHIECQIFFDKFGNGVFFFERDCSVQ----RRHQKVVEEAPAPHITPDMRHRIGTVSL 270

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRE 287
            A +A+G  G    +F+FD      F++E+N       P +T      E+    G    +
Sbjct: 271 RAAKAVGYVGAGTVEFIFDTERNTFFFMEMNTRLQVEHP-VTE-----EICQVKGKPL-D 323

Query: 288 LLLWMVEDA 296
           L+   +E A
Sbjct: 324 LVRLQLETA 332


>gi|113953489|ref|YP_730413.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9311]
 gi|113880840|gb|ABI45798.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           CC9311]
          Length = 1107

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  I+ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGYEVILINSNPASIMTDPEMADRTYVEPLTPDVVTRVIELERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALSKDGTLDRFGVELIGADLKAIQKAEDRQLFKQAMERIGVHVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASTLEEAESVGASISSYPRIIRPAFTLGGSGGGIAYNPEEFSAICKTGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P   +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPADGEVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|71404424|ref|XP_804919.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma cruzi strain CL
           Brener]
 gi|70868121|gb|EAN83068.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 679

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 9/153 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYV 172
            +    I  P +IK + GG   G+ ++K      L L        + +     +L     
Sbjct: 155 CEEAKKIGFPVLIKAVSGGGGKGMKIVKSVDEFKLMLESAKRESMNFFKDDRVILERYVT 214

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               + C +  D   +                +             I  D+   +  ++ 
Sbjct: 215 QPRHIECQIFFDKFGNGVFFFERDCSVQ----RRHQKVIEEAPAPHITPDMRHRIGTVSL 270

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A +A+G  G    +F+FD      F++E+N +
Sbjct: 271 RAAKAVGYVGAGTVEFIFDTERNTFFFMEMNTR 303


>gi|296879969|ref|ZP_06903939.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP07]
 gi|296428946|gb|EFH14823.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP07]
          Length = 734

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  + + ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|296452779|ref|ZP_06894468.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP08]
 gi|296258398|gb|EFH05304.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           NAP08]
          Length = 774

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 99/318 (31%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  I+ +                       +  ++   +PD    
Sbjct: 29  SGTQACQSLKEEGIEVVLINSNPATIMTDKEIADKIYIEPLTIEFIEKIIEKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           ++I  T    +      D  R      +  V V   
Sbjct: 89  GMGGQTGLNLAVELYEKGILDKYGVKIIGTSVESIKKGEDRDIFREVMKEINQPVIVSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D    I  P V++P       G  + + ++ +   L      +   Q+LIE+
Sbjct: 149 VTDLQAGLDYALTIGYPVVVRPAYTLGGTGGGIAENEEELREILSHGLQLSPVGQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +       +++ 
Sbjct: 209 SIKGW-KEIEYEVIRDSKGNCIVVCNMENIDPVGVHTGDSIVVAPTQTLSNKECAMLKKA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+  +G     F  +P S +   +EIN  P ++  S     +   GY   ++  
Sbjct: 268 SLDILNAVEVQGGCNVQFALNPHSFEYAVIEIN--PRVSRSS--ALASKATGYPIAKVSS 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYTLDEIENAVTKK 341


>gi|116619994|ref|YP_822150.1| urea amidolyase related protein [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116223156|gb|ABJ81865.1| urea amidolyase related protein [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 1171

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ + + +  +             +      Y++        +
Sbjct: 149 RIGYPVMLKSTAGGGGIGMRLCRDESELREGYTAVERLGRANFGAAGLYLEKFTANARHI 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
                      V          +  +       PA  I   + + +   A    +A+  R
Sbjct: 209 EVQIFGDGMGEVIALGERDCSAQRRNQKVIEETPAPGISPGVRERLFDAALRLGRAVRYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                +F++D  + +  +LE+N +     G+T            G    +L+ WMV  A+
Sbjct: 269 SAGTVEFIYDNDTAQFHFLEVNTRLQVEHGVTE--------EVTGI---DLVEWMVRLAA 317


>gi|297380116|gb|ADI35003.1| carbamoyl-phosphate synthase, large subunit [Helicobacter pylori
           v225d]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 91/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIATIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +     +  +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELVKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDVSFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 83/252 (32%), Gaps = 10/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   + D    ++H        +   L  ++ P   +      ++ D+ +    + 
Sbjct: 625 VKRIIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLK 682

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              +    + +           ++I  P +++P        + +++  + +   L   + 
Sbjct: 683 ELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTH 742

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                          +E    +  DA  D  E+ +     +  E    S +S   +P+ +
Sbjct: 743 ALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTL 802

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  E++R++      +G  G+    F        ++ +E+N +   T     P ++ 
Sbjct: 803 SPKILDEIERVSAKIALHLGVVGLLNIQFAV--HDNTLYLIEVNPRASRT----VPFLSK 856

Query: 280 YAGYSFRELLLW 291
             G    ++   
Sbjct: 857 ALGVPLAKVATR 868


>gi|240949499|ref|ZP_04753839.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           NM305]
 gi|240296072|gb|EER46733.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus minor
           NM305]
          Length = 393

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYCVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEDFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  +IK  + I             D         G  + 
Sbjct: 143 SAIKEIGIPCVVKPIMSSSGHGQSIIKSAEQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V      S+                  P  +     ++ Q +A  
Sbjct: 194 VEGFIQFDYEITQLTVRHIHGTSFLAPIGHIQIDGDYRESWQPQVMSEKAQQKAQEVAEK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +         + + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITSALGGRGIFGVELFVCGDD--IIFNEVSPRPHDTGMVTMISQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|308183071|ref|YP_003927198.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           PeCan4]
 gi|308065256|gb|ADO07148.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           PeCan4]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVVLINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAV--HDNTLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|213693136|ref|YP_002323722.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|213524597|gb|ACJ53344.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Bifidobacterium
           longum subsp. infantis ATCC 15697]
 gi|320459315|dbj|BAJ69936.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. infantis ATCC 15697]
          Length = 629

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILRKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     + +       +      D+  + T  +           K         
Sbjct: 188 DALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPF 247

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP     +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 248 LPE----EIISTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|161788884|dbj|BAF95078.1| carbamoyl-phosphate synthetase II [Neobodo saliens]
          Length = 1687

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 96/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      SV  V+   +PD    
Sbjct: 250 SGSQCLKSLREEGIETVLINPNIATVQTDNESADHVYFVPVTPESVERVIEKERPDGIL- 308

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-------GVPVCP 109
           +  G          +  L  +   +  +L + +S   +   + +           V    
Sbjct: 309 LGWGGQTALNCGVQLDRLGVLKKYNVKVLGTQVSTIAVTEDRELFRDALLQIDEHVAQSA 368

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + + H I  P +++        G  ++  ++ +      ++++    Q+LIE
Sbjct: 369 AVTTVEEAIKAAHHIGFPVMVRAAFCLGGQGSGIVDNEEQLIAK--CNAAFAIAPQVLIE 426

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             V G +     +     D         +F      ++  +        +  D +  ++ 
Sbjct: 427 MSVKGWKEIEYEVVRDIYDNCITICNMENFDPMG-VHTGESMVVAPSQTLTNDEFHMLRT 485

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 486 ASIRIIRHLGVVGECNVQYGLDPDSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 541

Query: 290 LWM 292
             +
Sbjct: 542 AKL 544



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 84/289 (29%), Gaps = 28/289 (9%)

Query: 22   CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
                L   G KV  I+ +                      SV  +L   +       + G
Sbjct: 802  VTRELRRLGHKVIMINYNPETVSTDYDECDRLYFDEISEESVLDILGKERVKGVVISVGG 861

Query: 61   NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               ++  ++     L I  T    +  A   +K        S   P   S+       + 
Sbjct: 862  QIVQNMALRLKDAGLPILGTDPRYIDMAEDRNKFSKMCDDISVRQPEWVSVSSLAQAREF 921

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               +  P +++P    S   + VI  +  +   L ++S  +     ++ +Y +       
Sbjct: 922  CAKVGYPCIVRPSYVLSGQAMSVISNEADVERYLSEASRVSGEHPAVVSKYYENSTEYDV 981

Query: 181  VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                 +     +    S+       +S   +  + P K   +   ++   A      +  
Sbjct: 982  --DVVAHYGKVLCYSISEHVENAGVHSGDATMFLPPQKKDAETMLKLYNAACQIADRLNV 1039

Query: 241  RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             G     F        +  +E NV+      S  P ++   G SF  ++
Sbjct: 1040 CGPMNVQF-LRQQDGTLRVIEANVR---CSRS-VPFVSKTLGISFPAVM 1083


>gi|116328910|ref|YP_798630.1| carbamoyl phosphate synthase large subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121654|gb|ABJ79697.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira borgpetersenii serovar Hardjo-bovis
           L550]
          Length = 1106

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE   +    + + A   + D+   K+ +   GV V  S  
Sbjct: 89  TVGGQTALNLALACNGAGLLEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + +  +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLTDAAEIKKKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPQQTLSDKEYQNLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IAIIREIGVETGGSNIQFAVNPANGDVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|254475908|ref|ZP_05089294.1| pyruvate carboxylase [Ruegeria sp. R11]
 gi|214030151|gb|EEB70986.1| pyruvate carboxylase [Ruegeria sp. R11]
          Length = 1147

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/155 (14%), Positives = 47/155 (30%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    I  P ++K   GG   G+  I     +   +L+            E Y
Sbjct: 142 NDMDAIREEAAEIGYPLMLKASWGGGGRGMRPIHGPDELEEKVLEGRREAEAAFGNGEGY 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRL 230
           ++ +      +    L      +         ++  +       PA    +  + E+  L
Sbjct: 202 LEKMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLSEEQRAELCDL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                Q +        +FL D    K +++E+N +
Sbjct: 262 GRKICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296


>gi|77457565|ref|YP_347070.1| allophanate hydrolase subunit 2 [Pseudomonas fluorescens Pf0-1]
 gi|77381568|gb|ABA73081.1| putative allophanate hydrolase [Pseudomonas fluorescens Pf0-1]
          Length = 1210

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/183 (17%), Positives = 64/183 (34%), Gaps = 24/183 (13%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GIELTCG 180
            P ++K   GG  +G+ V +    +             +      +++        L   
Sbjct: 152 YPVMLKSTAGGGGIGMRVCRNASELSESFEAVKRLGQNNFSDAGVFIEKYIQRARHLEVQ 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD    V  + V          K         LP  +  ++       A    +A+  
Sbjct: 212 VFGDGQGAVIALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCA----AAIKLAKAVNY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R     +F+FD  +++ ++LE+N +     G+T      ++    G    +L+ WM+E A
Sbjct: 268 RSAGTVEFVFDSDAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELA 316

Query: 297 SCL 299
           +  
Sbjct: 317 AGD 319


>gi|320534344|ref|ZP_08034831.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 171 str. F0337]
 gi|320133426|gb|EFW25887.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 171 str. F0337]
          Length = 1113

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGIRVILVNSNPATIMTDPDIADATYIEPITPEVLTTIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +    + +LE  ++    +   A     D+   K VV  CG  V  S++
Sbjct: 89  TLGGQTALNAAMSLVERGVLEEYDVELIGASAAAINAGEDRDEFKDVVERCGAEVARSVI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P V++P      LG  V   D  +        + +   ++L+E
Sbjct: 149 AHTMDECRAGVDALGGYPVVVRPSFTMGGLGSGVAFNDADLHRIAGAGLAASRTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   +     +     +      +          ++ +    
Sbjct: 209 ESILGWKEYELELMRDTADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDRELQRLRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIREVGVDTGGCNIQFAVDPATGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|94497781|ref|ZP_01304348.1| hypothetical protein SKA58_12395 [Sphingomonas sp. SKA58]
 gi|94422830|gb|EAT07864.1| hypothetical protein SKA58_12395 [Sphingomonas sp. SKA58]
          Length = 343

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/278 (16%), Positives = 96/278 (34%), Gaps = 15/278 (5%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVL----HGNFGEDGLVQAILELLEIPYTH 81
           LE+ G  +   D   S+       +PD+ F V      G    + +   +L   ++P+  
Sbjct: 52  LEEIGLNIRVADSYESLFD-----RPDVDFVVTLLNRGGFQNSEMMAPLLLSWRDMPHLG 106

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-PPYVIKPLKGGSSLG 140
           +  +   +S DK  SK + S+ GV   P+ +  R  + ++        V+KP    +S G
Sbjct: 107 ASPILRGVSDDKYLSKMIASAHGVLTMPAQIFRRGGLPAEPAFHAERLVVKPNASSASWG 166

Query: 141 IIVIKKDQSIPLDLLQSSSWNHG-----DQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           + ++         +       H         L++  V  +  + G        +   A P
Sbjct: 167 LAMVDSWTEARTQIDYLHGEGHDVLVEAWAPLLDIAVPVVGGSGGQPWILPPMMYVPADP 226

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  E +         L       +  +++ +       +      R +F +DP++ 
Sbjct: 227 HRARSHEEKRGLIDAGDDPLVLVEDRALLAQLEDMTRRLLSDLWPFDYGRFEFRYDPVTG 286

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            V ++E+N+   +         A   G     L+  ++
Sbjct: 287 AVQFMEVNLSCNLWSKKTISRSARSIGVDHAMLVETII 324


>gi|163868281|ref|YP_001609490.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           tribocorum CIP 105476]
 gi|161017937|emb|CAK01495.1| Biotin carboxylase [Bartonella tribocorum CIP 105476]
          Length = 452

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 95/285 (33%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   +    D D                       S+  ++A  +  
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPARDSYLSIQQIIAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE  +I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHDITFIGPTAAHIRIMGDKIEAKKTAQKLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +      + +   I  P +IK   GG   G+ V+  +Q   + L  + S     +
Sbjct: 133 GSDGAVSEESDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V+GD + +   +            ++  +      PA   
Sbjct: 193 GDDAVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSIQR---RHQKVWEEATSPALNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K    +A    + +G RG    +FL+   + + +++E+N +
Sbjct: 250 TERKKIGSIVANACAE-LGYRGAGTVEFLY--ENGEFYFIEMNTR 291


>gi|149200880|ref|ZP_01877855.1| carbamoyl-phosphate synthase large subunit [Roseovarius sp. TM1035]
 gi|149145213|gb|EDM33239.1| carbamoyl-phosphate synthase large subunit [Roseovarius sp. TM1035]
          Length = 1089

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEVVARIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTALAVADMGVLEKFGVELIGANRQAIEMAEDRKLFREAMDRLGIENPKATI 138

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N        +     P +I+P       G  V                 +   Q+LI++
Sbjct: 139 ANNMDECMAAIDYVGLPAIIRPAFTLGGTGGGVAYNRDDYIHFCKTGLDASPVSQILIDE 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 199 SLLGWKEFEMEVVRDKADNAIIVCAIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNGS 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 259 IAVLREIGVETGGSNVQWAVNPEDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 314

Query: 291 WM 292
            +
Sbjct: 315 KL 316



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 101/316 (31%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL   G++   I         D D S 
Sbjct: 554 VVILGGGPN-------RIGQGIEFDYCCCHACFALSKTGYETIMINCNPETVSTDYDTSD 606

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 607 RLYFEPLTFEHVMEILTKEQENGTLHGVIVQFGGQTPLKLARALEAEGIPILGTTPDAID 666

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 667 LAEDRERFQTLVTKLGLKQPHNGIASTGAQALAIAEDIGFPLVIRPSYVLGGRAMEIVRD 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE     + D S       +   +       
Sbjct: 727 MAHLERYINEAVVVSGDSPVLLDSYLSGAIECDVDALCDGSRVHVAGIMQHIEEAG---V 783

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +      E+++       A+   G+    F        ++ +E+N +
Sbjct: 784 HSGDSACSLPPYSLSDATIAEIKKQTEALALALNVVGLMNVQFAV--KGDDIYLIEVNPR 841

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 842 ASRT----VPFVAKAT 853


>gi|83942767|ref|ZP_00955228.1| pyruvate carboxylase [Sulfitobacter sp. EE-36]
 gi|83846860|gb|EAP84736.1| pyruvate carboxylase [Sulfitobacter sp. EE-36]
          Length = 1146

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   G+  I  ++ +   +++            E Y++ + L  
Sbjct: 150 QAAEVGYPLMLKASWGGGGRGMRPIANEEELKEKVMEGRREAEAAFGNGEGYLEKMILKA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAI 238
             +    L  +   +         ++  +       PA    +  +             +
Sbjct: 210 RHVEVQILGDSHGEIYHLFERDCSVQRRNQKVVERAPAPYLTEEQRAEICELGRKICAHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D    K +++E+N +
Sbjct: 270 NYECAGTVEFLMDMDDGKFYFIEVNPR 296


>gi|72382066|ref|YP_291421.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL2A]
 gi|72001916|gb|AAZ57718.1| carbamoyl-phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL2A]
          Length = 1102

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 97/315 (30%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALRSEGFEVILVNSNPASIMTDPETANRTYVEPLTASVVEQIIKIERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  V+      LE   I    + + A   + D+   K  + + GV VCPS  
Sbjct: 89  TMGGQTALNISVELAESGTLEKYNIELIGADLNAIKKAEDRNLFKIAMKNIGVDVCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    +    + S P +I+P       G  +                 +   Q+LIE
Sbjct: 149 ASNLQEAEIVGNEISSFPKIIRPAFTLGGSGGGIAYNQDEFLELCKTGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEFELEVMRDLSDNVVIICSIENVDPMGVHTGDSITVAPAQTLTDREYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SISIIREIGVATGGSNIQFAINPNNGEIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLAVGYRLDEIIND 339


>gi|295695966|ref|YP_003589204.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
 gi|295411568|gb|ADG06060.1| carbamoyl-phosphate synthase, large subunit [Bacillus tusciae DSM
           2912]
          Length = 1107

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFNV 57
           G     AL++ G++V  +         D   +  + +               +PD     
Sbjct: 30  GTQACRALKEEGYEVVLVNSNPATIMTDPHMADRVYIEPLTPETVEAVARRERPDGLLAT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   ++ R         VP    +
Sbjct: 90  LGGQTGLNLAVELARRGVLEELCIELLGTPLHAIERAEDREQFRKLMAEIGEPVPESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    + +          +   Q+L+E+ 
Sbjct: 150 TEVEEALQFADRIGYPVIVRPAYTLGGTGGGLAAGPEELAEVAALGLEASPIRQILVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G               T I V   +       ++  +        +    Y+ ++  +
Sbjct: 210 VAG-FKEIEYEVMRDGRDTCIVVCNMENVDPVGIHTGDSIVVAPSQTLSDQDYQLLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F  DP S + + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LRIIRALGIEGGCNVQFALDPASDRYYVIEVN--PRVSRSS--ALASKATGYPIARVAAR 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 88/285 (30%), Gaps = 32/285 (11%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+ AG++   ++ +                       V  V+    P        G   
Sbjct: 579 ALQKAGYEAVIVNNNPETVSTDFNTADRLYFEPLHVEDVMHVIRRENPVGVLVQFGGQTA 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   +K            P   +         +   
Sbjct: 639 INLAAALAERGVRILGTDLEQIDRAEDREKFDELLADLGLSRPRGRTAWSLEEARRAAQD 698

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++ + + +   L ++        + I++Y+ G E+    + 
Sbjct: 699 LGYPLLVRPSYVLGGRAMQIVDQPEELEGYLREAFEAGPDRPVWIDRYIQGTEVEVDAVC 758

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PAK    + K  +        +A+  +G
Sbjct: 759 DGEDVLI----PGIMEHIERAGVHSGDSIAVYPAKSLSPVMKARIVDATERIARALEVKG 814

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +    F+    + +++ LE+N +   T     P ++   G    E
Sbjct: 815 LINIQFVI--RNDELYVLEVNPRSSRT----VPFLSKVTGVPMVE 853


>gi|295098822|emb|CBK87911.1| carbamoyl-phosphate synthase, large subunit [Eubacterium
           cylindroides T2-87]
          Length = 725

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFNV 57
           G     +L + G++V  I+                    ++      V+   +PD     
Sbjct: 30  GSQACQSLREEGYEVILINSNPATIMTDTTIADRVYIEPINLDFAKRVIYKERPDAILGS 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +         IL+   +    + +LA   + D+   ++++      VP    +
Sbjct: 90  LGGQTGLNLVVELHEDGILDEYGVEILGTDLLAINRAEDRELFRELMQQIGEPVPHSRIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    +  P V++P       G      ++ +          +   Q LIEQ 
Sbjct: 150 HTVEEAVEYCQKLGYPVVVRPAYTLGGTGGGFADNEEELRSICEAGLKISPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +     +          +      +  + ++  +
Sbjct: 210 IAGYKEIEYEVIRDANDNAIVVCSMENVDPVGIHTGDSIVVAPVQTLTDRE-NQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKICGGCNVQLALDPKSFRYYVIEVN--PRVSRSS--ALASKATGYPIAKISAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325


>gi|21674490|ref|NP_662555.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium tepidum
           TLS]
 gi|21647680|gb|AAM72897.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium tepidum
           TLS]
          Length = 494

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIELADATYIEPITPYYVTKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
            + G    +  V+     +LE   +    +   A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVKLAESGVLERHGVELIGAKFRAIRKAENREFFGDAMRKLGLEMAKGFF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   ++   I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALEEIGLPIVIRPSFTLGGTGGGFAETKADYYDMVRRGLAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 SLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P S ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIIREIGVETGGSNIQFAINPKSGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|317014328|gb|ADU81764.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Gambia94/24]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q     +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQRGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 TELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSNLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YQNSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|282883228|ref|ZP_06291827.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus
           lacrimalis 315-B]
 gi|281297040|gb|EFA89537.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus
           lacrimalis 315-B]
          Length = 1067

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 92/313 (29%), Gaps = 37/313 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L+  G +   I+ +                       +  ++   KPD    
Sbjct: 28  SGSQAIESLKSLGIETVLINSNPATIMTDKKMADKIYIEPITIDFIEKIIKKEKPDSLLA 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          D +       +E+  T    +      D  R      +  +     
Sbjct: 88  AMGGQTGLNMAMELDKMGILKKYNIEVIGTDIDAIKKGEDRDIFRQTMKKINQPLVESEI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P V++P       G      ++ +   L      +   Q+L+E+
Sbjct: 148 VTSFEEGKKLAEKIGFPLVVRPAYTLGGTGGGFANNEEELEEILKHGLKISPVSQVLLEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G  +              + +   +       ++  +        +  ++  ++++ 
Sbjct: 208 SIKG-YMEIEFEVIRDGAGNSLIICDMENVDPVGVHTGDSIVVAPCQSLKKEVLDKLKKA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      +G +G        +P +   + +EIN  P ++  S     +   GY   ++  
Sbjct: 267 SIDIVNEVGVKGACNVQLALNPKTYDYYVIEIN--PRVSRSS--ALASKATGYPIAKVAT 322

Query: 291 WM-----VEDASC 298
            +     +++ SC
Sbjct: 323 KIATGLNLDEISC 335



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNVLHG 60
              +LE   +    I                     + +  V  +L   KP        G
Sbjct: 576 AIKSLEKLNYTTIIINNNPETVSTDFDISDRLYFEPETEEDVLNILELEKPLGVILQFGG 635

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++I  T    +  A   ++            P    +      +  
Sbjct: 636 QTAIKLAEFLDSKGIKILGTDFDNIDKAEDRERFEELLNSLDINRPKGGGVSSVEEGIKL 695

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+   
Sbjct: 696 ANKLKYPLLVRPSYVLGGKGMEITHDEDQLKKYLKAAFKEDSKNPVLIDKYLLGREIEVD 755

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            + D    +     P    +       S +S  + PA       KE          + + 
Sbjct: 756 AICDGQDILI----PGIMEHLERAGVHSGDSISIYPADKLSKKSKEKILDYTKKIAKGLK 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G+    F+       ++ +E+N +   T     P ++  +G    EL    +
Sbjct: 812 ALGMINIQFI--EYMDDIYIIEVNPRASRT----VPYISKVSGIPIVELATRAI 859


>gi|218283816|ref|ZP_03489730.1| hypothetical protein EUBIFOR_02324 [Eubacterium biforme DSM 3989]
 gi|218215576|gb|EEC89114.1| hypothetical protein EUBIFOR_02324 [Eubacterium biforme DSM 3989]
          Length = 1067

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 38/291 (13%)

Query: 22  CASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHG 60
           C   L DAG++   I+                         V  V+   KP        G
Sbjct: 577 CVETLRDAGYEAIIINNNPETVSTDFSISDKLYFEPLTTEDVMHVIDLEKPLGVIVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTM 118
                  +   L    +    + + +  L+ D+   + ++    +P            ++
Sbjct: 637 Q--TAINLADSLVEHGVKILGTSLHSIDLAEDRHEFEAMLHKLNIPQPQGETAVTVEESL 694

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177
              + I  P +++P        + ++  D  + + +       +H   +L+++Y+ G EL
Sbjct: 695 VIANKIGYPVLVRPSYVLGGRAMEIVHNDDELRVYMATAVKEISHDAPILVDKYIVGKEL 754

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
               + D          P    +       S +S  V P + I   +   +        +
Sbjct: 755 EIDAIADGKNVYI----PGVMEHIERAGVHSGDSISVYPTQTISQQVKDTIIDYGTRIGK 810

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG--YSF 285
                G+    F+ D     V+ LE+N +   T     P ++   G   S+
Sbjct: 811 GFEFVGLYNIQFIVDKEDN-VYVLEVNPRSSRT----VPFLSKITGVAMSY 856



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFNV 57
           G     +L + G++V  I+                    ++      V+   +PD     
Sbjct: 30  GSQACQSLREEGYEVILINSNPATIMTDSTIADRVYIEPINLDFAKRVIYKERPDAILGS 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +         IL+   +    + +LA   + D+   RS     +  VP    +
Sbjct: 90  LGGQTGLNLVVELHEDGILDEYGVEILGTDLLAINRAEDRELFRSLMQDINEPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P V++P       G      +  +          +   Q LIEQ 
Sbjct: 150 HTVEEAVAFCETLGYPVVVRPAYTLGGTGGGFADDEAELRDICEAGLKASPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +     +          +      +    +   +
Sbjct: 210 IAGYKEIEYEVIRDANDNAIVVCSMENVDPVGVHTGDSFVVAPVQTLTDRE-NAMLSSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        +P S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKICGGCNVQLALNPDSFKYYVIEVN--PRVSRSS--ALASKATGYPIAKISAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325


>gi|297195535|ref|ZP_06912933.1| carbamoyl-phosphate synthase [Streptomyces pristinaespiralis ATCC
           25486]
 gi|197721357|gb|EDY65265.1| carbamoyl-phosphate synthase [Streptomyces pristinaespiralis ATCC
           25486]
          Length = 1102

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 89/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       Q +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHEQGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVNAKIGHGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIKGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPDDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|115372578|ref|ZP_01459885.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
 gi|115370299|gb|EAU69227.1| D-ala D-ala ligase C-terminus family [Stigmatella aurantiaca
           DW4/3-1]
          Length = 835

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 109/275 (39%), Gaps = 21/275 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHG---NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
                L  ++PDL  N+      +   + +V  +L+++  PYT S  L+  L++ K ++K
Sbjct: 516 DFVDTLRRMQPDLVINLCESLAADSRGEIVVPGLLDMIGQPYTGSSALSLGLALHKPKAK 575

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII---VIKKDQSIPLDL 154
           +++ + G+      +V R        +  P ++KP    +S+G+    V++    +    
Sbjct: 576 ELLRARGISTPAFAVVKRLEDVKAVDLPYPLIVKPAHEDASMGVDFDSVVEGPAQLARAA 635

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCG--------VMGDASLDVTEIAVPKSDFYSYELKY 206
            +  S  H    L+EQ++ G E+            +    +   +    + +  SY+ K+
Sbjct: 636 AEVLSTFH-QPALVEQFIRGREIYVPLLGNAPRRALPLTEIHFGQAFENRPNIVSYKAKW 694

Query: 207 SSLNSTHVLPAKIPL-----DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + +                D+   +   A  A  A+ C+   R D    P     + ++
Sbjct: 695 ETESPECRDSTSAVCRLEDADLEARLVHTAMEAFSALDCQDYGRVDLRVSP-DGVPYVID 753

Query: 262 INVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           IN    + P + F + A  AG  +  L   +VE A
Sbjct: 754 INPNCDLHPGAGFAKAALAAGIDYPALAAHLVEIA 788


>gi|150399095|ref|YP_001322862.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           vannielii SB]
 gi|150011798|gb|ABR54250.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           vannielii SB]
          Length = 1081

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/294 (10%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G     ++ +                     + +  ++   KPD    
Sbjct: 28  SGSQACKSLKEEGIYTILVNSNPATIQTDSNIADRVYLEPLTPKILEKIIEKEKPDAILP 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+  +   ++ ++   D            +    +
Sbjct: 88  TMGGQTGLNLAMELSKRGILEKHGVELLGSTEKVIETSEDRDLFNKAMEEIKQPIAKSAA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P +++P       G  V   ++ +     +   ++   Q+LI+Q
Sbjct: 148 VNSIEGALNAVDVLGYPVIVRPAFTLGGTGGGVANTEEELIEITKKGLKYSMIKQVLIDQ 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +       ++  +        +  + +++++  
Sbjct: 208 SLLGWKEYEYEVMRDRNDTCIVVCNMENIDPMG-IHTGESIVTAPSQTLSDEFHQKLRDA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           A    + +   G     F  +P   +   +E+N  P ++  S     +   GY 
Sbjct: 267 AINIIRHLKIEGGCNVQFAVNPEMTEYVVIEVN--PRVSRSS--ALASKATGYP 316



 Score = 39.5 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 33/295 (11%), Positives = 88/295 (29%), Gaps = 36/295 (12%)

Query: 20  KACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
            A   AL++ G +   I         D D S  L    L  +   N++        L+  
Sbjct: 588 HAIY-ALKEIGIEAIIINNNPETVSTDYDTSDRLYFEPLVFEEIMNIIENESKNGELLGV 646

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--------- 121
           I++       +  +      ++ + +              I V       Q         
Sbjct: 647 IVQFGGQTAINLAMNLYGAGVNILGTSPHSIDLAEDRDQFIHVLEKLEIPQAEGGTAFSE 706

Query: 122 -------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VD 173
                    I  P +++P        + ++   + +   + ++   +    +LI+++  +
Sbjct: 707 EEALKVIEKIGFPALVRPSYVLGGRAMQIVYNFEDLKDYMNEAVKVSSEHPILIDKFLEE 766

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D         +   +           ++  + P  +  ++  +++     
Sbjct: 767 AIEVDVDAVCDGESVFIGAIMEHIEEAGIHSG---DSACVIPPQTLSKEVISKIETYTTK 823

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               +G  G+    +        V+ +E N +   T     P ++   G    ++
Sbjct: 824 LALELGVIGLLNIQYAI--KDGIVYIIEANPRASRT----IPYVSKSVGVPLAKI 872


>gi|156049693|ref|XP_001590813.1| hypothetical protein SS1G_08553 [Sclerotinia sclerotiorum 1980]
 gi|154692952|gb|EDN92690.1| hypothetical protein SS1G_08553 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 2243

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 85/290 (29%), Gaps = 28/290 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + KPD  + 
Sbjct: 467 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVITYEKPDAIYV 526

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +  T    + +    +                 S      
Sbjct: 527 TFGGQTALQVGIQLKDEFEGLGGTPISTIITTEDRELFARSMESIGEKCAKSASANNIDE 586

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M     I  P +++       LG      +Q +    L + ++    Q+LIE+ + G  
Sbjct: 587 AMHVVKDIGFPVIVRAAYALGGLGSGFADNEQELME--LCNKAFAASPQVLIERSMKGW- 643

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                          I V   + +     ++  +        +  + Y  ++  A    +
Sbjct: 644 KEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAVNVIR 703

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 704 HLGVVGECNIQYALNPDSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 749


>gi|308062235|gb|ADO04123.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Cuz20]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAV--HDNTLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|188527743|ref|YP_001910430.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Shi470]
 gi|188143983|gb|ACD48400.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Shi470]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQYMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSTKIALHLGVVGLLNIQFAV--HDNTLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|124023089|ref|YP_001017396.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9303]
 gi|123963375|gb|ABM78131.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 1102

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 100/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D GF+V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRDEGFEVVLVNSNPASIMTDPEMADRTYIEPLTPEVVARVIELERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAENHTLERFGVELIGADLAAIRKAEDRQLFKQAMERIGVDVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSLKEAEEVGEVINSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +  +  +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDAMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P   +V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDDGEVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E++  +
Sbjct: 327 LAVGYTLDEIINDI 340


>gi|298736126|ref|YP_003728651.1| carbamoyl-phosphate synthase large chain [Helicobacter pylori B8]
 gi|298355315|emb|CBI66187.1| carbamoyl-phosphate synthase large chain [Helicobacter pylori B8]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|261839705|gb|ACX99470.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori 52]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  ++   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKN---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHH--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|217032466|ref|ZP_03437959.1| hypothetical protein HPB128_175g27 [Helicobacter pylori B128]
 gi|216945874|gb|EEC24494.1| hypothetical protein HPB128_175g27 [Helicobacter pylori B128]
          Length = 1000

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|154339573|ref|XP_001562478.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134063061|emb|CAM39511.1| conserved hypothetical protein [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 516

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 44/251 (17%), Positives = 81/251 (32%), Gaps = 20/251 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL---LEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     ++E     ++P+T +      +S   M+ 
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALAEFKVPHTGAIAKYYEMSKPDMKL 120

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLL 155
                +        +            +  P +IK + G SS+G+    K      L   
Sbjct: 121 VAHYYNIETANYAVLEPGDDIESLCGHLEFPCIIKHISGYSSVGMDKSCKVYDMAQLVDR 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELK 205
            +         L+E++V G E T     D +        P              +  +  
Sbjct: 181 ATRFMAEYQFALVEEFVSGDEATILACNDCTQPEGVRVFPPVQVTFPEGEDFKHFQLKWA 240

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINV 264
                    +P   P  +   +        + +G  G  R D   D   + KV +LEIN 
Sbjct: 241 SYEGMKWKQVPEMDP-ALQDMISIARSAFKRMMGGIGYGRIDVRIDRQRNNKVVFLEINP 299

Query: 265 QPGMTPVSIFP 275
             G+    ++P
Sbjct: 300 NCGI----MYP 306


>gi|108563325|ref|YP_627641.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           HPAG1]
 gi|107837098|gb|ABF84967.1| carbamoyl-phosphate synthase [Helicobacter pylori HPAG1]
          Length = 1085

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 NELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLRAEILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|322712206|gb|EFZ03779.1| methylcrotonoyl-CoA carboxylase alpha chain [Metarhizium anisopliae
           ARSEF 23]
          Length = 673

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 74/219 (33%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A A   +K RSK+++++  VP  P    
Sbjct: 103 ALHPGYGFLSENSQFAEKCEREGIVFVGPPATAMADMGNKARSKEIMTAANVPCVPGYHG 162

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +  +     I+ P ++K ++GG   G+ ++  +      L  + +          
Sbjct: 163 PEQGEQELLQYAKDITFPVLLKSVRGGGGKGMRIVMTEDEFMTQLKSARAEARASFGEGG 222

Query: 170 QYVDGIELTCGVMGDASLDVTEIA--VPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
           + +   +              +              ++          PA    +   ++
Sbjct: 223 EVMLVEKYIVRPRHVEVQVFADKHGNTAALGERDCSVQRRHQKVLEESPAPDLDEATRQD 282

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+G  G    +F+ D  S K +++E+N +
Sbjct: 283 LWDKARKAASAVGYVGAGTVEFILDKDSGKFYFMEMNTR 321


>gi|307309033|ref|ZP_07588713.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           BL225C]
 gi|306900506|gb|EFN31120.1| D-alanine--D-alanine ligase domain protein [Sinorhizobium meliloti
           BL225C]
          Length = 101

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
                 +A+G  G++  DF     + +    E N  PG T +S++ +  A  G
Sbjct: 31  WNGSPFRALGSDGMACIDFFLME-NMRFVVNEANTIPGFTDISMYLKAMAAPG 82


>gi|156099654|ref|XP_001615692.1| biotin carboxylase subunit of acetyl CoA carboxylase [Plasmodium
           vivax SaI-1]
 gi|148804566|gb|EDL45965.1| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium vivax]
          Length = 3061

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/199 (16%), Positives = 68/199 (34%), Gaps = 14/199 (7%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V    +I      +     I  P +IK  +GG   GI  ++ +  I     Q        
Sbjct: 609 VYNKSTIHSLDACIKECQRIGYPVMIKASQGGGGKGIRKVENEAEIKKAYEQVQMELPNS 668

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + + +    +     +      D+       S       +          P+ +P DI+
Sbjct: 669 PIFLMKVCSNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSVVPPDIF 725

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPE 276
           +E+++ +    + I  RG    ++L+D   +  F+LE+N       P   G+T  ++   
Sbjct: 726 REMEKASIRLTKMIKYRGAGTIEYLYDQEKQTYFFLELNPRLQVEHPVSEGITDTNLISI 785

Query: 277 MAA-YAGYSFREL--LLWM 292
                 G   + +  +  +
Sbjct: 786 QLQVAMGVPLQNIDDIRRL 804


>gi|6634690|emb|CAB64539.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYSDLIEHLVDLA 34


>gi|262197388|ref|YP_003268597.1| carbamoyl-phosphate synthase, large subunit [Haliangium ochraceum
           DSM 14365]
 gi|262080735|gb|ACY16704.1| carbamoyl-phosphate synthase, large subunit [Haliangium ochraceum
           DSM 14365]
          Length = 1077

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 82/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++ + +                     +  V+   +P     
Sbjct: 29  SGAQACKALREEGLRVILLNSNPATIMTDPEMADATYIEPLTVGVLEKVIERERPSALLP 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +E+       +  A   ++ +               
Sbjct: 89  TLGGQTALNLALAGARAGIFERYGVELIGASVDAIEKAEDRERFKQAMNAIGERCCRSTH 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P +++P       G  +    +     + +    +   Q+L+E+
Sbjct: 149 VSSLAEAQACIGEVGFPAILRPSFTMGGAGGAIAYNAEEFDHLVRRGLEQSPVHQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +  +     
Sbjct: 209 SVLGWKEYELEVMRDCADNVVIVCSIENFDPMGVHTGDSITVAPALTLTDREYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 CAIIREIGVDTGGSNIQFAVDPATGEQIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|269956504|ref|YP_003326293.1| carbamoyl-phosphate synthase large subunit [Xylanimonas
           cellulosilytica DSM 15894]
 gi|269305185|gb|ACZ30735.1| carbamoyl-phosphate synthase, large subunit [Xylanimonas
           cellulosilytica DSM 15894]
          Length = 1126

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVVLVNSNPATIMTDPEFADATYVEPITTEVLTSIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +         +L   ++    + I A     D+ + K VV  C         
Sbjct: 89  TLGGQTALNAAIALDEAGVLAKYDVELIGANIPAIQKGEDRQQFKDVVERCGGESARSHI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 VHTIDEALAAADDLGYPMVVRPSFTMGGLGSGLAYDEVDLRRIVGQGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +  +  +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDKHDNVVVVCSIENVDAVGVHTGDSITVAPALTLTDREFQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAIDPDNGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|58696751|ref|ZP_00372291.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|58698246|ref|ZP_00373165.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|225630995|ref|YP_002727786.1| carbamoyl-phosphate synthase large subunit [Wolbachia sp. wRi]
 gi|58535218|gb|EAL59298.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Drosophila ananassae]
 gi|58537059|gb|EAL60189.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Drosophila simulans]
 gi|225592976|gb|ACN95995.1| carbamoyl-phosphate synthase large subunit [Wolbachia sp. wRi]
          Length = 1151

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 88/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+KV  +         D + S    +               +PD    
Sbjct: 29  SGTQSCKVLKSEGYKVILVNSNPATIMTDPEFSDATYIEPVLPEIIEKIIIKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAIKLADDGVLDKYNVELIGVNREAIKKAEDRELFRQSMDKIGLKYPKSII 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L  I  P +I+        G  +    +        +   +  +++ I++
Sbjct: 149 IKNQERIKEALDYIGLPAIIRSSFTLGGAGSGIAYNKEEFFNIAESALKISPINEVQIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDVEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   +++
Sbjct: 269 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVV 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327


>gi|226328607|ref|ZP_03804125.1| hypothetical protein PROPEN_02502 [Proteus penneri ATCC 35198]
 gi|225203340|gb|EEG85694.1| hypothetical protein PROPEN_02502 [Proteus penneri ATCC 35198]
          Length = 344

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 78/269 (28%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++ L++   +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPNAPAMHIAHRHHVVNMLNSNALKLIIEQEQPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATSLLVELEQKGQKVVPCARAVKLTMDREGIRRLASETLLLPT-SNYQFVDDEVSFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  VI+ +  +      S      G   +I + +   + 
Sbjct: 143 KAALDIGFPCIVKPVMSSSGKGQSVIRSENDLAHAWAYSQEGGRAGKGRVIVEKMIPFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P K+      + + +A    + 
Sbjct: 203 EITLLTIHAVDGIHFCAPIGHRQE-----KGDYRESWQPQKMSDIALAKAEHIASKVVKN 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +VF+ E++ +P
Sbjct: 258 LGGYGLFGVELFV--QGDEVFFNEVSPRP 284


>gi|254383574|ref|ZP_04998924.1| carbamoyl-phosphate synthase large chain [Streptomyces sp. Mg1]
 gi|194342469|gb|EDX23435.1| carbamoyl-phosphate synthase large chain [Streptomyces sp. Mg1]
          Length = 1102

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 90/308 (29%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRILKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       Q +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHEQGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKAKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHTMDDVIKGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +   + D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDTKDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAIDPADGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|33863094|ref|NP_894654.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9313]
 gi|33635011|emb|CAE20997.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 1102

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 100/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D GF+V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRDEGFEVVLVNSNPASIMTDPEMADRTYIEPLTPEVVTRVIELERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVELAENHTLERFGVELIGADLAAIRKAEDRQLFKQAMERIGVNVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSLKEAEEVGEVINSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +  +  +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDLADNVVIVCSIENLDAMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P   +V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDDGEVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E++  +
Sbjct: 327 LAVGYTLDEIINDI 340


>gi|311696113|gb|ADP98986.1| acetyl-CoA carboxylase biotin carboxylase subunit [marine bacterium
           HP15]
          Length = 448

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G K   +   VDR +  V LA            D   N+          
Sbjct: 16  ALRILRACKELGIKTVAVHSQVDRDLMHVRLADESVCIGPNSATDSYLNIPTIISAAEVT 75

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ +   +   GVP  P 
Sbjct: 76  DSVGIHPGYGFLAENADFAEQVEKSGFRFIGPKAETIRLMGNKVSAINAMIKAGVPTVPG 135

Query: 111 ILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V+  + ++   +  + S      
Sbjct: 136 SDGPLDDDEERTLRIAKEIGYPVMIKAASGGGGRGMQVVHSEAALLKGVQITQSEAKNAF 195

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L                ++  +       P   I  +  
Sbjct: 196 GDPTVYLEKFLEAPRHVEVQVLADMHGNCIHLGDRDCSMQRRNQKVIEEAPAPNINPESR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   +    A + IG  G    +FL+     + +++E+N +
Sbjct: 256 ERTLKACTDACKEIGYVGAGTFEFLY--QDGEFYFIEMNTR 294


>gi|289643059|ref|ZP_06475190.1| carbamoyl-phosphate synthase, large subunit [Frankia symbiont of
           Datisca glomerata]
 gi|289507103|gb|EFD28071.1| carbamoyl-phosphate synthase, large subunit [Frankia symbiont of
           Datisca glomerata]
          Length = 1131

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D             +V  ++   +PD    
Sbjct: 29  SGTQACRVLRSEGLRVVLVNSNPATIMTDPDIADATYVEPITPETVAKIIERERPDALLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       L+   +    + I A     D+   K +V++ G     S +
Sbjct: 89  TMGGQTALNTAMDLHAAGVLDRYGVRLIGANIDAIRAGEDRQAFKDIVAAVGGETARSAI 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  + +    S P V++P       G         +        + +   ++L+E+
Sbjct: 149 CTTPQECLAAAEEFSYPVVVRPSFTLGGAGSGFAHDADELRRMAADGIAASPSSEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELELMRDRADNVVVVCSIENVDPMGVHTGDSVTVAPAMTLTDREYQQMRNMA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMRAVGVDAGGCNIQFAVDPATGRLVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|315500615|ref|YP_004089417.1| urea carboxylase [Asticcacaulis excentricus CB 48]
 gi|315418627|gb|ADU15266.1| urea carboxylase [Asticcacaulis excentricus CB 48]
          Length = 1202

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 30/184 (16%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V   +  I       +    G+      +++       
Sbjct: 151 ADTIGYPVILKATAGGGGIGMKVCYSEVDIREGFATVARLGAGNFGDGGVFLERYVAIAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D   + +   A        
Sbjct: 211 HIEVQVFGDGQGHVMALGERDCSLQRRNQKVVEETPAPHLPDATRQALMDAAVRLACGAN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D      F+LE+N +     G+T            G    +L+ WM+  
Sbjct: 271 YRSAGTVEFLYDADRDDFFFLEVNTRLQVEHGVTE--------QVTGV---DLVEWMIRG 319

Query: 296 ASCL 299
           A+  
Sbjct: 320 AAGD 323


>gi|154506076|ref|ZP_02042814.1| hypothetical protein RUMGNA_03618 [Ruminococcus gnavus ATCC 29149]
 gi|153793575|gb|EDN75995.1| hypothetical protein RUMGNA_03618 [Ruminococcus gnavus ATCC 29149]
          Length = 1067

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 39/291 (13%), Positives = 87/291 (29%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  +  A   +             P   ++       +  + 
Sbjct: 641 IKLTEALMKMGVPILGTSAENVDKAEDRELFDEILEECEIPRPTGGTVFTAEEAKEVANR 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDNDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+        ++        +++   G
Sbjct: 761 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQSLTQKAKDKIAEYTRRLAKSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 LINIQFIVCGEDD-VYVIEVNPRSSRT----VPYISKVTGIPIVPLASKVI 862



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEQPDSVLPT 89

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G  G +    ++    L E      G  +  +   + R +   +   +    +    +
Sbjct: 90  LGGQAGLNLAMELEEAGFLREHNVRLIGTTSETIKKAEDRLEFKATMEKIGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 ENVEDGLAFANKIGYPVVLRPAYTLGGSGGGIAHDSEQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|260886442|ref|ZP_05897705.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|330838795|ref|YP_004413375.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|260863824|gb|EEX78324.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
 gi|329746559|gb|AEB99915.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sputigena
           ATCC 35185]
          Length = 1076

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 98/294 (33%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQI-----------DV----------DRSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   I           D+             V  ++   +P+       G   
Sbjct: 583 ALREMGYEAIIINNNPETVSTDFDISDRLYFEPLTTEDVLNIVDKEQPEGVIVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A   ++       ++   P   S+      ++    
Sbjct: 643 INLAASLQKAGVHIFGTSVDDIDRAEDRERFEEVLRQTNIPCPKGISVTDVESAVEGAAA 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++ K++ +   L ++        +L+++Y+ G E+    + 
Sbjct: 703 IGYPVMVRPSYVLGGRAMEIVYKEEELRDYLNRAVKVTPDHPVLVDRYMQGTEVEVDGIC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +P  +   +          +  +G+
Sbjct: 763 DGVTVVIPGIMEHIERAG---VHSGDSIAVYPPQTLPARVLYTIIDYTKRLALNLHVKGL 819

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE--MA--AYAGYSFREL 288
               ++   ++ +V+ +E+N       P ++ V+      +A  A  G+S  E+
Sbjct: 820 LNIQYVV--VNDEVYVIEVNPRSSRTVPFLSKVTDVKMVNLATRAAMGHSLEEM 871



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                       +  ++A   PD     
Sbjct: 30  GSQACRSLKEEGLEVVLVNSNPATIMTDTHIADRVYIEPLTVEFLEEIIAKELPDGLLAT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +       + +LE   +    + + A   + D+   +         +P    +
Sbjct: 90  LGGQAGLNLAVKLSEKGVLEKYHVELLGTSLEAIKKAEDRELFKETMQKLKEPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  + + ++ +   +++   ++   Q+LIE+ 
Sbjct: 150 EDVESAVGFANEIGYPLIVRPAYTMGGTGGGIAENEEELVETVIKGLKYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 D Y+ ++  +
Sbjct: 210 VAGWKEIEYEVMRDGNDNCITVCNMENFDPVGVHTGDSIVVAPTQTLSDHD-YQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +   G   + +  DP S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELNIEGGCNAQYALDPNSDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|225677098|ref|ZP_03788100.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
 gi|225590857|gb|EEH12082.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Muscidifurax uniraptor]
          Length = 1124

 Score = 57.6 bits (137), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 86/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+KV  +         D + S    +               +PD    
Sbjct: 29  SGTQSCKVLKSEGYKVILVNSNPATIMTDPEFSDATYIEPVLPEIIEKIIIKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAIKLADDGVLDKYNVELMGVNREAIKKAEDRELFRQSMDKIGLKYPKSII 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L     P +I+        G  +    +        +   +  +++ I++
Sbjct: 149 IKNQEQIKKALDYVGLPAIIRSSFTLGGAGSGIAYNKEEFFNIAESALKISPINEVQIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDAEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   +++
Sbjct: 269 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVV 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327


>gi|302335568|ref|YP_003800775.1| carbamoyl-phosphate synthase large subunit [Olsenella uli DSM 7084]
 gi|301319408|gb|ADK67895.1| carbamoyl-phosphate synthase large subunit [Olsenella uli DSM 7084]
          Length = 1074

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 85/298 (28%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG  V  +         D D             +V  V+   +PD    
Sbjct: 29  SGTQACRALRAAGLSVVLVNSNPATIMTDPDTADRTYVEPITLDAVRRVIERERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG----VPVCPS 110
            + G         +     L E      G    ++   + R     +       V    S
Sbjct: 89  NMGGQTALNCAVALGEAGVLDEFGIEVIGCDLDSIRRGEDRELFAAAMADLGLEVARAGS 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +        +  P VI+P       G  + +    +   + Q  + +   ++L+E+
Sbjct: 149 AHSMQDARRIVSEVGFPVVIRPSFTLGGAGGGIARDQGELERIVSQGLALSPEHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G +     +         +     +     +      +          ++ +     
Sbjct: 209 SIEGWKEIEMEVMRDVAGNGIVVCSIENLDPMGVHTGDSITVAPAQTLTDAELQRLRDYS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP   +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 LAILERIGVATGGSNVQFAVDPKDGRVIVVEMN--PRVSRSS--ALASKATGFPIAKV 322



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 48/330 (14%), Positives = 90/330 (27%), Gaps = 51/330 (15%)

Query: 5   MGGISSEREVS-----LSS------GKAC---------ASALEDAGFKVSQI-------- 36
            GG++   E S     + S      G+           A AL + GF+   +        
Sbjct: 546 CGGVTEAHEASRPRALILSAGPNRIGQGIEFDYCCVHAARALHERGFETVMVNCNPETVS 605

Query: 37  -DVD------------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            D D              V  V+   +P      L G              + I  T   
Sbjct: 606 TDYDSSDRLYFQPLTFEDVMDVIEVERPAGVVVALGGQTPIKLARDLEAAGVPIMGTSPD 665

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            +  A   D+  +         P        +   +    I  P VI+P       G+ +
Sbjct: 666 AIDLAEDRDRFAALLDRLRISYPPSSVARTQQEAAEVARRIGYPLVIRPSYVLGGRGMGI 725

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +  D+ +   +  ++       + ++ +  D IEL    + D         +   +    
Sbjct: 726 VYGDEDLAAYMASATHVTPERPVYLDAFLEDAIELDVDALADGRECYVGSVLEHIEECGI 785

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                  ++    P  +   I   V+        A G  G     F       +VF +E+
Sbjct: 786 HSG---DSACCWPPFSLSDAIVGRVRDTTRRLALACGIHGPLNVQFAI--RDEQVFVIEL 840

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           N +   T     P  +        +    +
Sbjct: 841 NPRASRT----VPFSSKATTVPLAQCAARI 866


>gi|312110769|ref|YP_003989085.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
 gi|311215870|gb|ADP74474.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
          Length = 450

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +  +    + +             Y++       
Sbjct: 148 AEHIGYPVMLKASAGGGGIGMQIVRDEDELRKAFVGNQKRAASFFGDGAMYLEKYIANPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A + IG
Sbjct: 208 HIEIQLLADRHGNCIYLWERECSIQRRHQKVVEEAPSPFLDEKTRRKIGETAVKAAKHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTMEFLVDEQKN-FYFLEMNTR 292


>gi|55980581|ref|YP_143878.1| carbamoyl phosphate synthase large subunit [Thermus thermophilus
           HB8]
 gi|81821888|sp|Q5SKN1|CARB_THET8 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|55771994|dbj|BAD70435.1| carbamoyl-phosphate synthase large chain [Thermus thermophilus HB8]
          Length = 1028

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 91/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++V  ++ +                       +  +LA   PD    
Sbjct: 29  SGTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGILAREAPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +       + IL+   +    +   A     D+   ++ +   G+ V     
Sbjct: 89  TLGGQTGLNLAMALHEEGILQKYGVELIGAKAEAIRKGEDREAFQEAMQRIGLEVPRGQL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G  +   +  +   L +  + +     L+E+
Sbjct: 149 VGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLSRGLTLSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 KAIIREIGVETGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 43/290 (14%), Positives = 88/290 (30%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AG++   +         D D              V  ++ H KP      L G   
Sbjct: 583 ALKEAGYETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNIVEHEKPIGVIATLGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   +   +         P           +     
Sbjct: 643 LKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLAPE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + V++ +  +   L +  +       ++       E    +  
Sbjct: 703 VGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFL--EGAVELDV 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIGCRG 242
           DA  D  E+ V     +       S +S  +LP     +   K+V+        A+G RG
Sbjct: 761 DALSDGQEVMVAGIMEHVERAGVHSGDSATLLPPVHVPEEALKKVRDYTRRLALALGVRG 820

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    +    +  +V+ LE N +   T     P ++   G    +L   +
Sbjct: 821 LLNVQYAV--VGEEVYVLEANPRASRT----VPFVSKAIGVPLAKLAALI 864


>gi|323490998|ref|ZP_08096192.1| carbamoyl phosphate synthase large subunit [Planococcus donghaensis
           MPA1U2]
 gi|323395354|gb|EGA88206.1| carbamoyl phosphate synthase large subunit [Planococcus donghaensis
           MPA1U2]
          Length = 1031

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 101/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  I+ +                      SV  ++   +PD    
Sbjct: 29  SGTQACVALKEEGVEVILINNNPATIMTDQSISDKVYFEPLTLDSVTAIIEKERPDGLLA 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            + G    +  +     +IL    +    + + A   + D+ + + +++     VP    
Sbjct: 89  TVGGQTALNLAMALSDSSILTKYGVTLLGTDMKAIKQAEDREQFRSLMNQLGEPVPDSDI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      ++       P +++P       G  + + +++    + Q  S +   Q L+E 
Sbjct: 149 IYSIEGALEFADSAGYPLIVRPAYTLGGFGGGIAQDEKTYIDLVKQGLSASPIKQCLVEI 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D T I +   + +     ++  +        +    +  ++  
Sbjct: 209 SIAG-YKEIEYEVMRDADGTCITICNMENFDPVGVHTGDSIVVAPSQTLNDKDFHMLRSS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+G  G     F   P +   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SIHIIKALGIIGACNVQFALHPETSAYYLIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 97/299 (32%), Gaps = 39/299 (13%)

Query: 20  KACASALEDAGFKVSQIDVDRS---------VGLVLAHLKPDLAFNVLH----------- 59
            +  +A +  G++   I+ +             L    + P+   NVL            
Sbjct: 580 HSVMAA-QKLGYEAIMINNNPETVSTDYEVADALYFEPITPEDILNVLDFEGINQVILQF 638

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G    +         + +  +   +L      D+  +             +       +
Sbjct: 639 GGQTSLNVAAALESAGITVLGSTVDLLDQMEDRDRFYAFLESIGLPTIPGKTAQNAAEVI 698

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P +++P       G+IV+  +Q +   L Q++       +L++ +V G E+ 
Sbjct: 699 PAARSLRFPVLLRPSYVIGGRGMIVLANEQELTDWLQQTTMTF---PVLVDHFVTGKEVE 755

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D             +       +S  + +   P  +  D  +E+   A      +
Sbjct: 756 ADILTDGDNVWVSAIFEHVEGTG---VHSGDSISVTPPVSLSADALQELTETAKHIATNM 812

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM----AAYAGYSFREL 288
              G+    F++   + ++F +EIN       P  + ++  P +    A   G  F EL
Sbjct: 813 DYTGLFNIQFVY--ENNQLFVMEINPRASRTAPISSKITDVPLVQHATALLLGIPFEEL 869


>gi|317011127|gb|ADU84874.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           SouthAfrica7]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNVVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 82/252 (32%), Gaps = 10/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   + D    ++H        +   L  ++ P   +      ++ D+ +    + 
Sbjct: 625 VKTIIQREQVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLK 682

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              +    + +           ++I  P +++P        + +++  + +   L   + 
Sbjct: 683 ELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTH 742

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                          +E    +  DA  D  E+ +     +  E    S +S   +P+ +
Sbjct: 743 SLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSNL 802

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  E++++       +G  G+    F        ++ +E+N +   T     P ++ 
Sbjct: 803 SPKILDEIEQVGAKIALHLGVVGLLNIQFAV--YENALYLIEVNPRASRT----VPFLSK 856

Query: 280 YAGYSFRELLLW 291
             G    ++   
Sbjct: 857 ALGVPLAKVATR 868


>gi|124484966|ref|YP_001029582.1| pyruvate carboxylase subunit A [Methanocorpusculum labreanum Z]
 gi|124362507|gb|ABN06315.1| pyruvate carboxylase subunit A [Methanocorpusculum labreanum Z]
          Length = 500

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 80/279 (28%), Gaps = 35/279 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G +   +    +    L     D AF                       
Sbjct: 19  AIRVMRACREMGIETVAVY-SEADANALHVKYADEAFLIGAAHPTKSYLNMDRILEVAEM 77

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E     A ++     +         +   K+ SKQ +   GVPV P
Sbjct: 78  AGADAIHPGYGFLAEKAAFSAAVKKAGFTFIGPSEATIKMMGSKLDSKQAMHDAGVPVLP 137

Query: 110 SIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                 +         I  P ++K   GG  +G+ ++  +  +   + +SS         
Sbjct: 138 WTQSTDHDEAKAFAESIGYPVIVKASAGGGGIGMTIVNNEAELDEAIAKSSRTAASAFGD 197

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
              +++        +       ++  V         ++          P   +  ++ + 
Sbjct: 198 STVFIEKYLAKPRHIEVQVFADSKGDVIHMYERECSIQRRHQKLIEEAPCPIMTDELRER 257

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + + A    +          +FL+D  S   +++E+N +
Sbjct: 258 MTQSAMTVAKTCNYENAGTVEFLYD--SGNYYFMEMNTR 294


>gi|84516408|ref|ZP_01003767.1| pyruvate carboxylase [Loktanella vestfoldensis SKA53]
 gi|84509444|gb|EAQ05902.1| pyruvate carboxylase [Loktanella vestfoldensis SKA53]
          Length = 1147

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/222 (11%), Positives = 63/222 (28%), Gaps = 14/222 (6%)

Query: 46  LAHLKPDLAFNV-LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
           L    PD       HG        Q + +L +        + + + +             
Sbjct: 87  LLSENPDFVDACTSHGITFIGPKAQTMRQLGDKASARRVAIEAGVPVIPATEVLGDDMDL 146

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +                  +  P ++K   GG   G+  I  ++ +   + +        
Sbjct: 147 IRKQ------------AAEVGYPLMLKASWGGGGRGMRPIMNEKELEEKVREGRREAEAA 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
               E Y++ + +    +    L  +   +         ++  +       PA    ++ 
Sbjct: 195 FGNGEGYLEKMIMRARHVEVQILGDSHGQIYHLWERDCSVQRRNQKVVERAPAPYLSEVQ 254

Query: 225 K-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +  L       +        +FL D  S   F++E+N +
Sbjct: 255 REHICNLGKKICAHVNYECAGTVEFLMDMDSGDFFFIEVNPR 296


>gi|158338766|ref|YP_001519943.1| hypothetical protein AM1_5677 [Acaryochloris marina MBIC11017]
 gi|158309007|gb|ABW30624.1| conserved hypothetical protein [Acaryochloris marina MBIC11017]
          Length = 398

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 79/253 (31%), Gaps = 16/253 (6%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D    V   +     D  F     +F      +  L             +  ++ +K   
Sbjct: 94  DFLNEVIQAIQQESIDYIFPASENSFKFVSRHRVQLSSSSNLIALPSQNSLDVTFNKWEL 153

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              + +  +P   +IL    ++   + +S P ++KP  G     I  I++   +   +  
Sbjct: 154 SLFLKNRKIPTPKTILP--SSITQSNQLSYPILLKPACGSGGENIKKIEEVSVLKSIIHN 211

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             + N     ++++Y+DG ++ C V+      +T                          
Sbjct: 212 PIAKNDYKDYILQEYIDGYDIDCNVLCKDGKILTHSVQKPLGIEKGFSPKIDKLHFIHD- 270

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
                     V  +       +   GI+  D  +   +  ++ +EIN +      S+   
Sbjct: 271 --------NSVLSIVKKTMFELQWSGIAHLDLRYCHKTGNLYLIEINPRF---WQSL--M 317

Query: 277 MAAYAGYSFRELL 289
            +   G +F  LL
Sbjct: 318 GSLSIGINFPYLL 330


>gi|32172506|gb|AAK15525.2|AF327646_1 carbamoyl phosphate synthetase II [Plasmodium vivax]
          Length = 1483

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 472 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 531

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 532 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLREINEIIAPYGS 591

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 592 ARNVEQAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELIKK-CKEIFLQTDNEIFIDK 650

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 651 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREI 709

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 710 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 761


>gi|317182218|dbj|BAJ60002.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           F57]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPRGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTLALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLRAEILDEIERVSVKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|317180233|dbj|BAJ58019.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           F32]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPRGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVHH--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|317178731|dbj|BAJ56519.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           F30]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAVHH--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|317012728|gb|ADU83336.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Lithuania75]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSITNVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLKPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|294775420|ref|ZP_06740935.1| carbamoyl-phosphate synthase, large subunit [Bacteroides vulgatus
           PC510]
 gi|294450740|gb|EFG19225.1| carbamoyl-phosphate synthase, large subunit [Bacteroides vulgatus
           PC510]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|265751929|ref|ZP_06087722.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_33FAA]
 gi|263236721|gb|EEZ22191.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|254881604|ref|ZP_05254314.1| carbamyl phosphate synthetase [Bacteroides sp. 4_3_47FAA]
 gi|319642989|ref|ZP_07997623.1| carbamyl phosphate synthetase [Bacteroides sp. 3_1_40A]
 gi|254834397|gb|EET14706.1| carbamyl phosphate synthetase [Bacteroides sp. 4_3_47FAA]
 gi|317385354|gb|EFV66299.1| carbamyl phosphate synthetase [Bacteroides sp. 3_1_40A]
          Length = 1074

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|254779520|ref|YP_003057626.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           B38]
 gi|254001432|emb|CAX29427.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Helicobacter pylori B38]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|237712226|ref|ZP_04542707.1| carbamyl phosphate synthetase [Bacteroides sp. 9_1_42FAA]
 gi|229453547|gb|EEO59268.1| carbamyl phosphate synthetase [Bacteroides sp. 9_1_42FAA]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|237726371|ref|ZP_04556852.1| carbamyl phosphate synthetase [Bacteroides sp. D4]
 gi|229434897|gb|EEO44974.1| carbamyl phosphate synthetase [Bacteroides dorei 5_1_36/D4]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|218291430|ref|ZP_03495356.1| Carbamoyl-phosphate synthase L chain ATP-binding [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218238720|gb|EED05938.1| Carbamoyl-phosphate synthase L chain ATP-binding [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 446

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V+  ++ +      +S+         E +++       
Sbjct: 148 AAEIGYPVMLKASYGGGGIGMQVVNSEEELRKAFASNSARAKAYFGNGEMFLEKRVQRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+    + + + +   A    +AIG
Sbjct: 208 HVEIQVLCDGHGHGVYLWERECSIQRRHQKVVEEAPSPFVDEALRRRMGEAALAICRAIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YENAGTLEFLVDEEKN-FYFLEMNTR 292


>gi|212691327|ref|ZP_03299455.1| hypothetical protein BACDOR_00819 [Bacteroides dorei DSM 17855]
 gi|212666080|gb|EEB26652.1| hypothetical protein BACDOR_00819 [Bacteroides dorei DSM 17855]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|208434822|ref|YP_002266488.1| carbamoyl-phosphate synthase [Helicobacter pylori G27]
 gi|208432751|gb|ACI27622.1| carbamoyl-phosphate synthase [Helicobacter pylori G27]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITGENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSNLNPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|150006478|ref|YP_001301222.1| carbamyl phosphate synthetase [Bacteroides vulgatus ATCC 8482]
 gi|149934902|gb|ABR41600.1| carbamyl phosphate synthetase [Bacteroides vulgatus ATCC 8482]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    + ++   V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNVRVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENLEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNAEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|154148767|ref|YP_001407085.1| biotin carboxylase [Campylobacter hominis ATCC BAA-381]
 gi|153804776|gb|ABS51783.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter hominis
           ATCC BAA-381]
          Length = 444

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/250 (20%), Positives = 91/250 (36%), Gaps = 13/250 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I E   + +      A AL  DK ++K  +   GVPV P  
Sbjct: 77  DAVFPG-YGFLSENQNFAEICEKEGLKFIGPSTSAMALMSDKSKAKAFMKRAGVPVVPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P ++K   GG   G+ V+ K + +  +   + S        
Sbjct: 136 DGALKDVNEAKKLAEEIGYPVILKAAAGGGGRGMRVVNKPEDLEKNFWSAESEALAAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++    +   +    L      V         L+          PA I  +  +E 
Sbjct: 196 GTMYIEKYFTSPRHIEVQILGDEHGNVVHIGERDCSLQRRHQKLIEESPAVILDEKTREE 255

Query: 228 -QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              +A  A +AIG       +FL+D   +K +++E+N +  +       EM   +G    
Sbjct: 256 LHEVAVKATKAIGYSSAGTFEFLYDRKDKKFYFIEMNTR--LQVEHCVSEM--VSGL--- 308

Query: 287 ELLLWMVEDA 296
           +L+ WM++ A
Sbjct: 309 DLIEWMIKIA 318


>gi|189424657|ref|YP_001951834.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter lovleyi SZ]
 gi|189420916|gb|ACD95314.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter lovleyi SZ]
          Length = 446

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 87/284 (30%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A ++ G K   +       S+ + LA                  +   +     
Sbjct: 14  AIRVIRACKELGIKTVAVYSTADADSLHVKLADESVCIGPAPSSQSYLNINAIISAAELT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+     I E   I +      +  +  DK+ ++Q V   GVP+ P 
Sbjct: 74  DAEAIHPGYGFLSENAKFAEICEQCGITFIGPSAESMRVMGDKISARQAVIEHGVPILPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +      +     I  P +IK   GG   G+ ++    ++            + + 
Sbjct: 134 TKENVKTVDEAVKIAKQIGFPVIIKATAGGGGRGMKIVHSQATLANAYATAKAEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + D  + +  V+   +   V+ D   +   +            +             +  
Sbjct: 194 NPDVYIEKYCVEPRHVEIQVLADKHGNCIHLGERDCSIQ----RRHQKIIEEAPCPVLTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  K +   A  A +A+    +   +FL D  S + +++E+N +
Sbjct: 250 ETRKAMGDAAIKAAKAVNYSSVGTVEFLLD-KSGEFYFMEMNTR 292


>gi|307719965|ref|YP_003891105.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfurimonas autotrophica DSM 16294]
 gi|306978058|gb|ADN08093.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Sulfurimonas autotrophica DSM 16294]
          Length = 387

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 82/273 (30%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                   +D+  +  ++   KPD     +
Sbjct: 23  GKEVIIEAQRLGLETIAVDRYENAPAHQVAHRSHVVNMLDKDALLEIIYREKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D L  A      +    + +  +    +       V          +      +
Sbjct: 83  E-AINIDALFAAEDRGYNVIPNANAVSKTMNRKNIRTFAAEVLGLKTGPYKFVTTQEGML 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P V+KP+   S  G  + K ++ IP    ++         LI +     +  
Sbjct: 142 EAARELGFPCVMKPVMSSSGHGQSIAKSEEDIPASWEEAKEARGDASELIVEAFVDFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++     +  Q++A      +
Sbjct: 202 ITMLTARNGKETVFCEPIGH-----EQRDGDYVFSWQPMQMSEAAKQNAQKIAKEITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G +G+   +        +V++ E++ +P   GM
Sbjct: 257 GGQGLFGVELFV--KGDEVYFSEVSPRPHDTGM 287


>gi|315586864|gb|ADU41245.1| carbamoyl-phosphate synthase, large subunit [Helicobacter pylori
           35A]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPRGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 87/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++     D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQREHVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L                    +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVMHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLRAEILDEIERVSAKIALHLGVVGLLNIQFAVHH--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|84687798|ref|ZP_01015668.1| pyruvate carboxylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84664170|gb|EAQ10664.1| pyruvate carboxylase [Rhodobacterales bacterium HTCC2654]
          Length = 1148

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +   + +            E Y++ +     
Sbjct: 151 AEEIGYPLMLKASWGGGGRGMRPIEGPEELETKIKEGRREAEAAFGNGEGYLEKMITRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   +         ++  +       PA        +E+  L     + + 
Sbjct: 211 HVEVQILGDTHGNIYHLWERDCSVQRRNQKVVERAPAPYLSPAQREEICNLGRKICEHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 271 YECAGTVEFLMDMETGKFYFIEVNPR 296


>gi|189460606|ref|ZP_03009391.1| hypothetical protein BACCOP_01247 [Bacteroides coprocola DSM 17136]
 gi|189432682|gb|EDV01667.1| hypothetical protein BACCOP_01247 [Bacteroides coprocola DSM 17136]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADKIYFLPVTPYFVEKVIAKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E        + + A   + D+    Q +    V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGIFEKYNARVLGTPVQAIMDTEDRELFVQKLDEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENIEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|86357495|ref|YP_469387.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium etli
           CFN 42]
 gi|86281597|gb|ABC90660.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
          Length = 449

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+ +K      G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V K +  +      + +      G+
Sbjct: 135 DGEVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGN 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 195 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 301

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 302 ITGI---DLVHEQIRVAS 316


>gi|227495449|ref|ZP_03925765.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Actinomyces
           coleocanis DSM 15436]
 gi|226830996|gb|EEH63379.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Actinomyces
           coleocanis DSM 15436]
          Length = 1101

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  I+ +                      ++  ++   +PD    
Sbjct: 29  SGTQACRILKSEGIRVILINSNPATIMTDPGVADATYVEPINVETIRAIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  ++           +E+    + ++ +    D+ R         V     
Sbjct: 89  TLGGQTALNTAMKLVEAGVLEEFGVEMIGADADVIRAGEDRDEFRKVVEACGAEVARSVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +  ++  P V++P      LG      ++ +          +   ++L+E+
Sbjct: 149 AHTMEECLAAADVLGYPMVVRPSFTMGGLGSGFAHNEEELRRFAGAGLQNSITSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +      +          ++   V+  
Sbjct: 209 SILGWKEIELEVVRDRTGRCIPICSIENVDPMGVHTGDSITIAPALTLTEEELDNLVKIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           + +       +      F   P + +V  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 SDIVAGVGVNQAGCNLQFAIHPTNGRVVVIEMN--PRVSRSS--ALASKATGYPIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|6634651|emb|CAB64521.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G ++ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGITYPDLIELLVDLA 34


>gi|329906596|ref|ZP_08274448.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480]
 gi|327547234|gb|EGF32086.1| Urea carboxylase [Oxalobacteraceae bacterium IMCC9480]
          Length = 1203

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 55/182 (30%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +  Q +          +  +      Y++       
Sbjct: 147 ATQIGYPVMLKSTAGGGGIGMRLCRDAQELEAAYTSVKHLSENNFKNGGIYLEKFVEHAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++          PA    D     +   A     ++ 
Sbjct: 207 HVEVQIFGDGRGGVVSLGERDCSVQRRHQKVIEETPAPGLSDATRTALAETAVRLTASLS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +++ D  S   ++LE+N +     G+T            G    +L+ WM+  
Sbjct: 267 YRSAGTVEYVLDADSGAFYFLEVNTRLQVEHGVTE--------EVFGV---DLVEWMIRA 315

Query: 296 AS 297
           A+
Sbjct: 316 AT 317


>gi|304395164|ref|ZP_07377048.1| urea carboxylase [Pantoea sp. aB]
 gi|304357417|gb|EFM21780.1| urea carboxylase [Pantoea sp. aB]
          Length = 1201

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 69/191 (36%), Gaps = 24/191 (12%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD---- 173
             +   +  P ++K   GG  +G+ V +  Q++             +      +++    
Sbjct: 144 HHAAESVGYPVMLKSTAGGGGIGMRVCRDAQALSDAFETVQRLGQNNFSDAGVFLEKYIE 203

Query: 174 -GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               L   + GD   +V  + V          K         LPA +   +       A 
Sbjct: 204 RARHLEVQIFGDGKGEVIALGVRDCSIQRRNQKVIEETPAPNLPAGMAEALCS----AAI 259

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFREL 288
              +A+  R     +F++D  +++ ++LE+N +     G+T      ++    G    +L
Sbjct: 260 ALGKAVNYRSAGTVEFVYDSAAQQFYFLEVNTRLQVEHGVTE-----QVW---GV---DL 308

Query: 289 LLWMVEDASCL 299
           + WM+E A+  
Sbjct: 309 VKWMIELAAGD 319


>gi|326203550|ref|ZP_08193414.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
 gi|325986370|gb|EGD47202.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           papyrosolvens DSM 2782]
          Length = 1071

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D ++                ++ + KPD     
Sbjct: 30  GTQACQALKEEGIEVVLVNSNPATIMTDTNIADKVYIEPLKAEVVKNIIRYEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      L+   +    +   A  ++ D+   K  +   G P   S  +
Sbjct: 90  LGGQTGLNLAMELAESGFLQEQGVKLLGTATEAIKMAEDRQDFKDTMERIGEPCIASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P +++P       G  ++  ++ +          +   Q+LIE+ 
Sbjct: 150 TTIEDAVEFAREIDYPVIVRPAYTLGGTGGGIVYNEEELRETGENGLRLSRVHQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEYEVMRDSKGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLADKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G +G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISALGIQGGCNVQYALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 96/289 (33%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQ---------IDVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL++ G++             D D +  L    L P+   N++             G   
Sbjct: 583 ALKELGYETIIANNNPETVSTDFDTADRLYFEPLTPEDVANIVEAENPKGAIVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T +  + +A   +K       +    P   +I      + + + 
Sbjct: 643 IKLTKSLDDMGVKIFGTEAKNVDAAEDREKFDEILEKTGIPRPQGKTIFTLEEAIAAANE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 703 LGYPVLVRPSYVLGGQGMEIAYNDKDVKEFMEIITRTVQEHPILVDKYMMGKEIEVDAIC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P++     + + +        +A+   G
Sbjct: 763 DGEEILI----PGIMEHLERAGVHSGDSISVYPSQTLTDKVKEVIVDYTVKLAKALNVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    ++    + +V+ +E+N +   T     P ++   G     L   
Sbjct: 819 MVNIQYVL--YNNQVYVIEVNPRSSRT----VPYISKVTGIPMVNLATK 861


>gi|124512906|ref|XP_001349809.1| carbamoyl phosphate synthetase [Plasmodium falciparum 3D7]
 gi|23615226|emb|CAD52216.1| carbamoyl phosphate synthetase [Plasmodium falciparum 3D7]
          Length = 2375

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 31/308 (10%), Positives = 97/308 (31%), Gaps = 32/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53
            G S E +    S   C   +     K   I         D D S  L    +  ++    
Sbjct: 1853 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1909

Query: 54   --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                          G    + +       + I  + +  +    + +K            
Sbjct: 1910 YNFENSNGVIIAFGGQTSNNLVFSLYKNNVNILGSSAQSVDCCENRNKFSHLCDSLKIDQ 1969

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           +   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1970 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 2029

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 2030 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 2087

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    +++   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 2088 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 2141

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 2142 IDLATRIL 2149



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/296 (10%), Positives = 85/296 (28%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 698 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 757

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G            + +L+        + + +  ++ ++     K    +  +    S
Sbjct: 758 TFGGQTALNCALMLDQKKVLKKNNCQCLGTSLESIRITENRTLFAEKLKEINERIAPYGS 817

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D  + I  P +++       L    I  ++ +             +++ I++
Sbjct: 818 AKNVNQAIDIANKIGYPILVRTTFSLGGLNSSFINNEEELIEK-CNKIFLQTDNEIFIDK 876

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 877 SLQGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREI 935

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 936 ALKVITHLNIIGECNIQFGINPQTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 987


>gi|77919211|ref|YP_357026.1| carbamoyl-phosphate synthase large subunit [Pelobacter carbinolicus
           DSM 2380]
 gi|77545294|gb|ABA88856.1| carbamoyl-phosphate synthase large subunit [Pelobacter carbinolicus
           DSM 2380]
          Length = 1084

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQACKALKEEGYTVILLNSNPATIMTDPETADRTYVEPVTPEVLEKIIEAERPDAILP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G               L        G    A+   + R+    +   + V       
Sbjct: 89  TLGGQTALNTAVAAAQNGVLERYGVELIGASLPAIEKAEDRTLFKEAMAKIGVAVPRSGL 148

Query: 115 RFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             + +    I      P +I+P       G  +    +      L     +  D++L+E+
Sbjct: 149 AHSYEEAMKIIEYVGYPAIIRPSFTLGGTGGGIAYNREEYEALALGGIDASPTDEILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +F +  +      +          +        
Sbjct: 209 SIIGWKEFELEVMRDKADNVVIICSIENFDAMGVHTGDSITVAPAQTLSDKEYQLLRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIIREIGVDTGGSNIQFAINPVDGRLAVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 89/289 (30%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    L  +    ++H            G   
Sbjct: 598 ALAEDGYETIMVNCNPETVSTDYDTSDRLYFEPLTFEDVLEIVHIEKPVGVIVQFGGQTP 657

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      + I  T    +  A   ++ ++     +   P                 
Sbjct: 658 LKLAVSLEKAGVPIIGTSPDAIDRAEDRERFQALLFKLNLLQPDNGLARSFDEAEKIAER 717

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVM 182
           I  P V++P        + ++    ++   +  +   +    +LI+++++  IE+    +
Sbjct: 718 IGYPVVVRPSYVLGGRAMEIVYHVDALRNYMQNAVQASPDHPILIDKFLEHAIEVDVDAL 777

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           ++  + P  +  +I  E++R        +G  G
Sbjct: 778 CDGKSVVIGGIMQHIEEAGIHSG---DSACALPPFSLKPEIVDEIRRQTRELALELGVVG 834

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    +     +  ++ LE+N +   T     P ++        +L   
Sbjct: 835 LMNIQYAVKEDT--IYLLEVNPRASRT----VPFVSKATNRPLAKLAAR 877


>gi|289706197|ref|ZP_06502560.1| carbamoyl-phosphate synthase, large subunit [Micrococcus luteus
           SK58]
 gi|289557036|gb|EFD50364.1| carbamoyl-phosphate synthase, large subunit [Micrococcus luteus
           SK58]
          Length = 1101

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIRVLKEEGVRVVLVNSNPATIMTDPELADATYVEPITPAVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + I A  L  ++   K VV   G     S +
Sbjct: 89  TLGGQTALNTAIALDKDGVLERFGVELIGANIEAIELGENRELFKGVVERAGGESARSHI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           +  P V++P      LG  +   +  +         ++   ++L+E+
Sbjct: 149 VHTMEEALAAVEDLKYPVVVRPSFTMGGLGSGMAYDEADLYRICGAGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENVDPVGVHTGDSITVAPAMTLTDREYQKLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P+  +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAVNPVDGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|239917759|ref|YP_002957317.1| carbamoyl-phosphate synthase large subunit [Micrococcus luteus NCTC
           2665]
 gi|281413746|ref|ZP_06245488.1| carbamoyl phosphate synthase large subunit [Micrococcus luteus NCTC
           2665]
 gi|259585683|sp|C5CCF1|CARB_MICLC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|239838966|gb|ACS30763.1| carbamoyl-phosphate synthase large subunit [Micrococcus luteus NCTC
           2665]
          Length = 1101

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQAIRVLKEEGVRVVLVNSNPATIMTDPELADATYVEPITPAVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + I A  L  ++   K VV   G     S +
Sbjct: 89  TLGGQTALNTAIALDKDGVLERFGVELIGANIEAIELGENRELFKGVVERAGGESARSHI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           +  P V++P      LG  +   +  +         ++   ++L+E+
Sbjct: 149 VHTMEEALAAVEDLKYPVVVRPSFTMGGLGSGMAYDEADLYRICGAGLQYSPTSEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     M     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELEMMRDKNDNVVVVCSIENVDPVGVHTGDSITVAPAMTLTDREYQKLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P+  +V  +E+N  P ++  S     +   G++  ++  
Sbjct: 269 INVIREVGVDTGGCNIQFAVNPVDGRVVVIEMN--PRVSRSS--ALASKATGFAIAKIAT 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|317486857|ref|ZP_07945669.1| carbamoyl-phosphate synthase [Bilophila wadsworthia 3_1_6]
 gi|316921896|gb|EFV43170.1| carbamoyl-phosphate synthase [Bilophila wadsworthia 3_1_6]
          Length = 1079

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                      +V  ++   +P     
Sbjct: 29  SGTQGIKALKEEGYEVVLVNSNPATIMTDPGLADRTYIEPIEPETVAAIVRKERPCAILP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +         +L         +       +  +   +Q + + G+ V  S  
Sbjct: 89  TLGGQTGLNTALALAKSGVLAECGTELIGARAEVIEKAESRELFRQAMENIGLKVPQSAI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+P       G  +    + +        + +   +++IEQ
Sbjct: 149 AHNMDDVRRIGSSMPFPMIIRPAFTLGGTGGGIAYNMEDLEEIAGDGLTASPVSEVMIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +  +  +      +          +  K     
Sbjct: 209 SVIGWKEFEMEVMRDTADNCVIVCSIENVDAMGVHTGDSITVAPAQTLTDREYQKMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFGVNPANGELVIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/287 (16%), Positives = 91/287 (31%), Gaps = 32/287 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+DAG +   +         D D              V  ++   +PD       G   
Sbjct: 592 ALKDAGVQAIMVNSNPETVSTDYDTSDRLYFEPLTFEDVMHIVEKERPDGVIVQFGGQTP 651

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +  V  +   + I  T    +  A   ++ ++     S   P   +      + +  H 
Sbjct: 652 LNLAVPLLRAGVPILGTSPDAIDRAEDRERFQALLQKLSLLQPANGTATTLEESREIAHR 711

Query: 124 ISPPYVIKPLK--GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           I  P VI+P    GG ++ I+   ++ +    L           L+ +   + IE+    
Sbjct: 712 IGYPIVIRPSYVLGGRAMMIVYDDEEMAEYFALHVGKQKLEHPVLIDKFLENAIEVDVDA 771

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D         +   +           +S  + P  +P +   E++R      + +   
Sbjct: 772 LSDGEDVYVAGVMEHIEEAGIHSG---DSSCVLPPYSLPAETVAEIERQTVALAKELRVV 828

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F        VF LE+N +   T     P ++   G     L
Sbjct: 829 GLMNIQFAV--KDGVVFILEVNPRASRTA----PFVSKATGVPLPRL 869


>gi|224026356|ref|ZP_03644722.1| hypothetical protein BACCOPRO_03112 [Bacteroides coprophilus DSM
           18228]
 gi|224019592|gb|EEF77590.1| hypothetical protein BACCOPRO_03112 [Bacteroides coprophilus DSM
           18228]
          Length = 1075

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADKIYFLPVTPYFVEKVIAKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       + E        + + A   + D+    Q +    V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGVFEKYNARVLGTPVQAIMDTEDRELFVQKLDEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENIEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|170696086|ref|ZP_02887222.1| pyruvate carboxylase [Burkholderia graminis C4D1M]
 gi|170138989|gb|EDT07181.1| pyruvate carboxylase [Burkholderia graminis C4D1M]
          Length = 1142

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 7/235 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    + D      +G   E+      +    + +         +  +K+ 
Sbjct: 39  LDID-DILRIAKQTQVDAIHPG-YGFLSENPDFAQAVIDAGLRWIGPSPEVMRMLGNKVA 96

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + GVPV P+        +  +     I  P ++K   GG   G+ V++ +  + 
Sbjct: 97  ARNAAVAAGVPVMPATPPLPHDLQECLRLAAEIGYPLMLKASWGGGGRGMRVLESEAELE 156

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L  +           E YV+ +      +    L      +         ++  +   
Sbjct: 157 AALAAARREALSAFGNDEVYVEKLVRNARHVEVQILGDMHGDLVHLHERDCTVQRRNQKV 216

Query: 212 THVLPAKIPLDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA    D  +  +   A     ++G       +FL D  S + +++E+N +
Sbjct: 217 VERAPAPYLDDAGRAMLCDSALRLMNSVGYTHAGTVEFLMDADSGQFYFIEVNPR 271


>gi|320011928|gb|ADW06778.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           flavogriseus ATCC 33331]
          Length = 1102

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHDNGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKAKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  +   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHTMDDVIAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDVGIAIIREVGVDTGGCNIQFAIDPSDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|29833409|ref|NP_828043.1| carbamoyl phosphate synthase large subunit [Streptomyces
           avermitilis MA-4680]
 gi|60389759|sp|Q827Q7|CARB_STRAW RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|29610532|dbj|BAC74578.1| putative carbamoyl-phosphate synthase large subunit [Streptomyces
           avermitilis MA-4680]
          Length = 1102

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRILRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       Q +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHEQGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVRAKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLEGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPSMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPDDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|261838293|gb|ACX98059.1| carbamoyl-phosphate synthase, large subunit [Helicobacter pylori
           51]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPRGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPKTLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLNPEILDEIERVSAKIALHLGVVGLLNIQFAV--YENSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|1872144|emb|CAA72256.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) large subunit
           [Thermus thermophilus HB27]
          Length = 1028

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 89/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++V  ++ +                       +  +LA   PD    
Sbjct: 29  SGTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGILAREAPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  +       L+   +    +   A     D+   ++ +    + V     
Sbjct: 89  TLGGQTGLNLAMALYEEGILQKYGVELIGAKAEAIRKGEDREAFQEAMRRIDLEVPRGQL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G  +   +  +   L +  + +     L+E+
Sbjct: 149 VGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLSRGLTLSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 KAIIREIGVETGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 42.2 bits (97), Expect = 0.11,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AGF+   +         D D              V  ++ H KP      L G   
Sbjct: 583 ALKEAGFETIMVNSNPETVSTDYDTADRLYVEPLTLEDVLNIVEHQKPIGVIATLGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   +   +         P           +     
Sbjct: 643 LKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLAPE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDG-IELTCGV 181
           +  P +++P        + V++ +  +   L +  +       ++ +++++G IEL    
Sbjct: 703 VGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFLEGAIELDVDA 762

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  ++T + P  +P +  K+V+         +G R
Sbjct: 763 LSDGQEVMVAGIMEHVERAG---VHSGDSATLLPPVHVPEEALKKVRDYTRRLALTLGVR 819

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+    +    +  +V+ LE N +   T     P ++   G    +L   +
Sbjct: 820 GLLNVQYAV--VGEEVYVLEANPRASRT----VPFVSKAIGVPLAKLAALI 864


>gi|57234039|ref|YP_181915.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides
           ethenogenes 195]
 gi|57224487|gb|AAW39544.1| carbamoyl-phosphate synthase, large subunit [Dehalococcoides
           ethenogenes 195]
          Length = 1089

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G +   ++ +                      S+  ++   +PD     
Sbjct: 37  GTQACKAMREEGVESILVNSNPATIMTDENVADRVYIEPLTVESITKIIEKERPDGLLPT 96

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  V      +L    +    + I     + D+   +         VP   ++
Sbjct: 97  LGGQTGLNLAVDLADAGVLAKYNVRSLGTPINTIRTAEDRELFKELLAKIGEPVPPSETV 156

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P VI+P       G       + +        + +   Q+L+E+ 
Sbjct: 157 TTAEDALKVAREIGLPVVIRPAYTLGGTGGGFANNWEEVEEVAQTGLNASPIHQILVEKS 216

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +          +   +     + ++  +
Sbjct: 217 VAGWKEIEYEVMRDGADNCITICNMENFDPMGVHTGDSIVVVPV-QTLTNKESQMLRTAS 275

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G        +P   + + +E+N  P ++  S     +   GY    +   
Sbjct: 276 IKIIRALGIEGGCNVQLSLNPNGNEYYVIEVN--PRVSRSS--ALASKATGYPIARVASK 331

Query: 292 M 292
           +
Sbjct: 332 I 332



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 28/173 (16%), Positives = 57/173 (32%), Gaps = 13/173 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++     +   +  +   N G  +LI++Y+ G E+   
Sbjct: 709 AESIGYPVVVRPSYVLGGRAMEIVSDASDLIRYMSAAIELNTGHPILIDKYLVGKEVEVD 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            + D          P    +       S +S  V P +         +        +A+ 
Sbjct: 769 AIADGETVFI----PGVMEHIERAGVHSGDSMAVYPTQNLNAHDLATISDYTIRIGKALN 824

Query: 240 CRGISRSDFLFDPL----SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    F+           V+ LE+N +   T     P ++   G    ++
Sbjct: 825 VRGLMNIQFVVSKDPEGGDNIVYILEVNPRGSRT----VPFLSKVTGVPMVDI 873


>gi|46198555|ref|YP_004222.1| carbamoyl phosphate synthase large subunit [Thermus thermophilus
           HB27]
 gi|47606747|sp|P96495|CARB_THET2 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|46196177|gb|AAS80595.1| carbamoyl-phosphate synthase large chain [Thermus thermophilus
           HB27]
          Length = 1028

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 89/298 (29%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL  AG++V  ++ +                       +  +LA   PD    
Sbjct: 29  SGTQAVKALRGAGYRVVLVNSNPATIMTDPELAERTYIEPLDLEHLEGILAREAPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  +       L+   +    +   A     D+   ++ +    + V     
Sbjct: 89  TLGGQTGLNLAMALYEEGILQKYGVELIGAKAEAIRKGEDREAFQEAMRRIDLEVPRGQL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P V++P       G  +   +  +   L +  + +     L+E+
Sbjct: 149 VGSVEEGLHFAREVGFPVVVRPSFTLGGTGGGIAHDEAELVEVLSRGLTLSPVHTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SVLGWKEFELEVMRDHADTVVIITSIENVDPMGVHTGDSITVAPAQTLSDVEYQRMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  DP + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 KAIIREIGVETGGSNIQFAVDPKTGRQVVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 42.6 bits (98), Expect = 0.068,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++AGF+   +         D D              V  ++ H KP      L G   
Sbjct: 583 ALKEAGFETIMVNSNPETVSTDYDTADRLYFEPLTLEDVLNIVEHEKPIGVIATLGGQTP 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   +   +         P           +     
Sbjct: 643 LKLAKGLEEAGVRLLGTPFSAIHQAEDREAFHALCQRLGIPQPEGRVAQSPEEALRLAPE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI-EQYVDG-IELTCGV 181
           +  P +++P        + V++ +  +   L +  +       ++ +++++G IEL    
Sbjct: 703 VGFPLLVRPSYVLGGRAMQVVRDEGELKRYLEEVYAPLEERPSILLDRFLEGAIELDVDA 762

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D    +    +   +       +S  ++T + P  +P +  K+V+         +G R
Sbjct: 763 LSDGQEVMVAGIMEHVERAG---VHSGDSATLLPPVHVPEEALKKVRDYTRRLALTLGVR 819

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G+    +    +  +V+ LE N +   T     P ++   G    +L   +
Sbjct: 820 GLLNVQYAV--VGEEVYVLEANPRASRT----VPFVSKAIGVPLAKLAALI 864


>gi|332670486|ref|YP_004453494.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas fimi ATCC
           484]
 gi|332339524|gb|AEE46107.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas fimi ATCC
           484]
          Length = 1114

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVVLVNSNPATIMTDPEFADATYVEPITTEVLTSIIAKERPDAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + I A     D+ + KQVV  CG     S +
Sbjct: 89  TLGGQTALNAAIALDAAGVLEEYGVELIGANIPAIQKGEDREQFKQVVEVCGGESARSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V+           +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 VHTIDDALAAVQDLGYPVVVRPSFTMGGLGSGIAYDEDDLRRIVGQGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDKHDNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVEPTTGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|239932432|ref|ZP_04689385.1| carbamoyl phosphate synthase large subunit [Streptomyces ghanaensis
           ATCC 14672]
 gi|291440798|ref|ZP_06580188.1| carbamoyl-phosphate synthase large chain [Streptomyces ghanaensis
           ATCC 14672]
 gi|291343693|gb|EFE70649.1| carbamoyl-phosphate synthase large chain [Streptomyces ghanaensis
           ATCC 14672]
          Length = 1102

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +L+   +    + + A     D+ R K+VV      +     
Sbjct: 89  TLGGQTALNAAIALHESGVLDKYGVELIGANVEAIHKGEDRDRFKEVVEEVRKKIGQGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      +  +     Q  + +   
Sbjct: 149 ARSVICHSMDEVLAGVDELGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLALSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P+  +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 TLRDIGIAVIREVGVDTGGCNIQFAVNPVDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|158422769|ref|YP_001524061.1| carbamoyl-phosphate synthase large subunit [Azorhizobium
           caulinodans ORS 571]
 gi|158329658|dbj|BAF87143.1| carbamoyl-phosphate synthase large subunit [Azorhizobium
           caulinodans ORS 571]
          Length = 1107

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 89/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL + G++V  +         D D +    +  + P++               
Sbjct: 29  SGTQACKALREEGYRVVLVNSNPATIMTDPDMADVTYIEPITPEIVAKIIEKERGDRSKG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+   +  ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLKKMGTLEKFDVEMIGATAEAIDKAEDRELFRDAMTKIGLDT 148

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +       +    +  P +I+P       G  +          + +    +  ++
Sbjct: 149 PRSRQIKTLGEALEALDEVGLPAIIRPSFTMGGTGGGIAYNKAEFIEIIERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLVEESVLGWKEYEMEVVRDKADNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  DP S ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAIDPASGRMIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAARL 331


>gi|99035115|ref|ZP_01314900.1| hypothetical protein Wendoof_01000260 [Wolbachia endosymbiont of
           Drosophila willistoni TSC#14030-0811.24]
          Length = 1151

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+KV  +         D + S    +               +PD    
Sbjct: 29  SGTQSCKVLKSEGYKVILVNSNPATIMTDPEFSDATYIEPVLPEIIEKIIIKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAIKLADDGVLDKYNVELIGVNTHAIKKAEDRELFRQSMDRIGLKYPKSII 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L     P +I+        G  +    +        +   +  +++ I++
Sbjct: 149 IKNQEQIKKALDYVGLPAIIRSSFTLGGAGSGIAYNKEEFFNIAESALKISPINEVQIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDVEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   +++
Sbjct: 269 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVV 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327


>gi|290968205|ref|ZP_06559748.1| carbamoyl-phosphate synthase, large subunit [Megasphaera genomosp.
           type_1 str. 28L]
 gi|290781687|gb|EFD94272.1| carbamoyl-phosphate synthase, large subunit [Megasphaera genomosp.
           type_1 str. 28L]
          Length = 1068

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 94/298 (31%), Gaps = 34/298 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  I+        D  +                V+   +PD     
Sbjct: 28  GTQACRALKEEGVEVVLINSNPATIMTDEDIADRVYVEPISLEYVTAVIKKERPDGLLAT 87

Query: 58  LHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           L G  G +    +     L     T  G   +A+   + R     +   +    +     
Sbjct: 88  LGGQVGLNMAVELSRAGVLKTYDVTLLGTDLAAIQEAEDRELFKKAMKDIDQPVAESDIV 147

Query: 116 FTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +    D    I  P +++P       G  +   ++ +     +    +   Q+L+E+ 
Sbjct: 148 EDVSSALDFARTIGYPIIVRPAYTLGGTGGGIAYTEEELAAIAARGIKLSPIHQILVERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   D+  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDKADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDLQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    + +   G     +  DP S + + +E+N  P ++  S     +   GY   ++
Sbjct: 266 SLKIIRRLKIEGGCNVQYALDPKSNRYYVIEVN--PRVSRSS--ALASKATGYPIAKV 319



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/266 (11%), Positives = 81/266 (30%), Gaps = 12/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  V+   KP        G    +         + I  T    + 
Sbjct: 604 DSLYFEPLTV---EDVMAVVEKEKPVGVICQFGGQTAINLAAPLARRGVAILGTSVDGMD 660

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++            P       +   M     +  P +++P        + ++  
Sbjct: 661 RAEDRERFDELLAKLHIPRPDGRIATSDTEAMRVAKELQFPLIVRPSYVLGGRAMEIVYN 720

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   L ++   +    +LI++Y+ G E+    + D +       + + +       +
Sbjct: 721 ESELERYLREAVIASPDHPILIDEYMVGREIEVDAVADGTDVYIPGIMEQVERAG---VH 777

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +     P  +  ++  ++          +  +G     F+      K++ +E+N + 
Sbjct: 778 SGDSIAVYPPQHVTQEMTAQIVDYTTRIALELQVKGAVNMQFVVAA--GKLYVIEVNPRS 835

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWM 292
             T     P ++        EL   +
Sbjct: 836 SRT----VPFLSKVTHVPIVELATRI 857


>gi|302550124|ref|ZP_07302466.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           viridochromogenes DSM 40736]
 gi|302467742|gb|EFL30835.1| carbamoyl-phosphate synthase, large subunit [Streptomyces
           viridochromogenes DSM 40736]
          Length = 618

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          L+   +    + + A     D+   K+VV +    +     
Sbjct: 89  TLGGQTALNTAISLHEAGTLDKYGVELIGANVEAINKGEDRDLFKEVVEAVRGKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLQGVETLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKHDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 TLRDIGIAVIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|331092564|ref|ZP_08341385.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330400676|gb|EGG80282.1| carbamoyl-phosphate synthase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 1074

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 99/303 (32%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G+++  +              DV          +  ++A  +PD    
Sbjct: 29  SGTQACKALKSLGYEIVLVNSNPATIMTDPETADVTYIEPLNVERMEQIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G  G +   +     +LE   +      + A     D++  K+ + S G+ +  S  
Sbjct: 89  NLGGQSGLNLCAELAQAGVLEKYNVEVIGVQVDAIERGEDRIEFKKTMDSLGIEMARSEV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P V++P       G  ++   + +     +    +   Q+L+E+
Sbjct: 149 AYSVDEALAIADKLGYPVVLRPAYTMGGAGGGLVYNKEELKTVCARGLQASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G E     +   S           +       ++  +        I  ++ K +Q  
Sbjct: 209 SILGWEELELEVVRDSEGNMITVCFIENIDP-LGVHTGDSFCSAPMLTISEEVQKRLQEK 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     ++   G     +  DP + +   +EIN +   T  S     +   G+    L+ 
Sbjct: 268 SHKVVDSVQVIGGCNVQWAHDPKTDRDIIIEINPR---TSRSS-ALASKATGFPIA-LVS 322

Query: 291 WMV 293
            M+
Sbjct: 323 AML 325



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 91/291 (31%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   GF+   +         D D              V  +    KP        G   
Sbjct: 581 ALRKLGFETIIVNCNPETVSTDYDTSDKLYFEPLTLEDVLSIYKKEKPVGVIAQFGGQTP 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T   ++  A   D  R+        +P     +     ++    
Sbjct: 641 LNLAADLEKNGVKILGTAPSVIDLAEDRDLFRAMMEKLEIPMPESGMAVNVEEAVEIAER 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ V+   +S+   +  +        +LI+++++          
Sbjct: 701 IGYPVMVRPSYVLGGRGMEVVYDSESMAGYMKAAVGVTPDRPILIDRFLN---HALECEA 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
           DA  D T   VP    +       S +S  ++P+K   +   +  +       + +  +G
Sbjct: 758 DAISDGTHAFVPAVMEHIELAGVHSGDSACIIPSKHISEENIKTIKEYTRKIAEEMHVKG 817

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +     + KV+ LE N +   T     P ++         L   +V
Sbjct: 818 LMNMQYAI--ENGKVYVLEANPRASRT----VPLVSKVCNIKMVPLATEIV 862


>gi|291556260|emb|CBL33377.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           V10Sc8a]
          Length = 1068

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 95/293 (32%), Gaps = 32/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G++             D D              V  ++A  KP        G
Sbjct: 579 CVWALKEMGYEAIICNNNPETVSTDFDTGDRLYFDPLTFEDVDSLIATEKPYGVVVQFGG 638

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T +  +  A   +K            P   ++      + +
Sbjct: 639 QTAIKLTKHLQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKA 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P        +I+   D  +   +   ++    + +LI++Y+ G E+   
Sbjct: 699 ANELGYPVLLRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S  V PA+     I   +        +A+ 
Sbjct: 759 AICDGTDFLI----PGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALN 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+    ++    + +V+ +E+N +   T     P ++   G    ++   +
Sbjct: 815 VIGLVNIQYVV--YNNEVYVIEVNPRSSRT----VPYISKVTGVQMVDIATKI 861



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ + +                     V  ++   KPD   + 
Sbjct: 30  GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKIIKIEKPDSILST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L    +    +       + D+   K  + + G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTMEAIGEPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D   +I  P +++P       G  +      +          +   Q+L+E+ 
Sbjct: 150 ETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLRLSPITQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +F      ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDAKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIQALKVEGGCNCQFALKPDSFEYSVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|291531444|emb|CBK97029.1| carbamoyl-phosphate synthase large subunit [Eubacterium siraeum
           70/3]
          Length = 1068

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 95/293 (32%), Gaps = 32/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G++             D D              V  ++A  KP        G
Sbjct: 579 CVWALKEMGYEAIICNNNPETVSTDFDTGDRLYFDPLTFEDVDSLIATEKPYGVVVQFGG 638

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T +  +  A   +K            P   ++      + +
Sbjct: 639 QTAIKLTKHLQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKA 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P        +I+   D  +   +   ++    + +LI++Y+ G E+   
Sbjct: 699 ANELGYPVLLRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S  V PA+     I   +        +A+ 
Sbjct: 759 AICDGTDFLI----PGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALN 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+    ++    + +V+ +E+N +   T     P ++   G    ++   +
Sbjct: 815 VIGLVNIQYVV--YNNEVYVIEVNPRSSRT----VPYISKVTGVQMVDIATKI 861



 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 93/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ + +                     V  ++   KPD   + 
Sbjct: 30  GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKIIKIEKPDSILST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L    +    +       + D+   K  + + G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTMEAIGEPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D   +I  P +++P       G  +      +          +   Q L+E+ 
Sbjct: 150 ETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLRLSPITQTLVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +F      ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDAKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIQALKVEGGCNCQFALKPDSFEYSVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|323528821|ref|YP_004230973.1| urea carboxylase [Burkholderia sp. CCGE1001]
 gi|323385823|gb|ADX57913.1| urea carboxylase [Burkholderia sp. CCGE1001]
          Length = 1213

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 62/180 (34%), Gaps = 16/180 (8%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ V    + +             +      +++        +
Sbjct: 155 RIGYPVMLKSTAGGGGIGMRVCSSPEELSAHFDAVKRLGQNNFSDAGVFLEKYIERARHL 214

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
                   +            ++  +       PA    D +   +   A    +A+  R
Sbjct: 215 EVQVFGDGQGDAIALGVRDCSVQRRNQKVLEETPAPNLPDGMAAALCEAALKLARAVHYR 274

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                +F++D L++K ++LE+N +     G+T      ++         +L+ WM+E A+
Sbjct: 275 SAGTVEFVYDALAQKFYFLEVNTRLQVEHGVTE-----QVWKV------DLVRWMIELAA 323


>gi|226324796|ref|ZP_03800314.1| hypothetical protein COPCOM_02583 [Coprococcus comes ATCC 27758]
 gi|225207244|gb|EEG89598.1| hypothetical protein COPCOM_02583 [Coprococcus comes ATCC 27758]
          Length = 1066

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/293 (14%), Positives = 94/293 (32%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDLEKPDGAVVQFGGQ-- 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    ++++ C +P      +       +  
Sbjct: 639 TAIKLTESLMKMGVPILGTSAEDVDAAEDRELFDEILAQCNIPRPKGDTVFTAEEAKEVA 698

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    
Sbjct: 699 NRLGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLVGKEIEVDA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGC 240
           + D +  +     P    +       S +S  V PA+   ++ K           +A+  
Sbjct: 759 VCDGTDILI----PGIMEHIERAGIHSGDSISVYPAQSISEVTKRKIEEYTKRLAKALHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P ++   G     L    +
Sbjct: 815 IGMINIQFIVCGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATRAI 861



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 93/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + +         V     +
Sbjct: 90  LGGQAGLNLAMELEEAGFLKEHNVRLIGTTAETIKKAEDRLEFKDTMEKIGEPVAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +    + +   L      +   Q+L+E+ 
Sbjct: 150 ENIEDGVAFADKIGYPVVLRPAYTLGGSGGGIAHDQEQLEEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELNITGGCNVQYALHPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341


>gi|210135109|ref|YP_002301548.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           P12]
 gi|210133077|gb|ACJ08068.1| carbamoyl-phosphate synthase large subunit [Helicobacter pylori
           P12]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSIDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  D   D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDVICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLNPEILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|167749373|ref|ZP_02421500.1| hypothetical protein EUBSIR_00325 [Eubacterium siraeum DSM 15702]
 gi|167657654|gb|EDS01784.1| hypothetical protein EUBSIR_00325 [Eubacterium siraeum DSM 15702]
          Length = 1068

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 95/293 (32%), Gaps = 32/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G++             D D              V  ++A  KP        G
Sbjct: 579 CVWALKEMGYEAIICNNNPETVSTDFDTGDRLYFDPLTFEDVDSLIATEKPYGVVVQFGG 638

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T +  +  A   +K            P   ++      + +
Sbjct: 639 QTAIKLTKHLQESGVRILGTSAESIDDAEDREKFDELLEKCKIPRPKGHTVFTTEEALKA 698

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P        +I+   D  +   +   ++    + +LI++Y+ G E+   
Sbjct: 699 ANELGYPVLLRPSYVLGGQNMIIAHCDSDVTEYMTIITATELENPVLIDKYLMGTEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S  V PA+     I   +        +A+ 
Sbjct: 759 AICDGTDFLI----PGIMEHIERAGVHSGDSISVYPAQTLSDKIKSTIVTYTERLAKALN 814

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+    ++    + +V+ +E+N +   T     P ++   G    ++   +
Sbjct: 815 VIGLVNIQYVV--YNNEVYVIEVNPRSSRT----VPYISKVTGVQMVDIATKI 861



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/301 (14%), Positives = 94/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     AL+  G +V  I+ + +                     V  ++   KPD   + 
Sbjct: 30  GTQACRALKAEGLEVVLINSNPATIMTDKHMADKIYIEPLTLDVVKKIIKIEKPDSILST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L    +    +       + D+   K  + + G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAEEGFLAENGVKLLGANPETIHKAEDRQAFKDTMEAIGEPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +D   +I  P +++P       G  +      +          +   Q+L+E+ 
Sbjct: 150 ETVEDALDFAEVIHYPVIVRPAFTLGGTGGGIAYSKDELHEIATNGLRLSPITQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +           +F      ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDAKGNVITVCSMENFDP-VGVHTGDSIVIAPAVTLADKEYQMLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               QA+   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIIQALKVEGGCNCQFALKPDSFEYSVIEVN--PRVSRSS--ALASKATGYPIAKVATK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|317470285|ref|ZP_07929679.1| pyruvate carboxylase [Anaerostipes sp. 3_2_56FAA]
 gi|316902258|gb|EFV24178.1| pyruvate carboxylase [Anaerostipes sp. 3_2_56FAA]
          Length = 1172

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 80/239 (33%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ +++  +      D      +G   E+       E   I +            DK+ 
Sbjct: 85  LDI-KTIIRIAKEKNVDAIHPG-YGFLSENPEFVDACERHGITFIGPTSDIMRAMGDKIS 142

Query: 96  SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SKQ+     VP+ P +       +  ++    +  P ++K   GG   G+ ++   + +P
Sbjct: 143 SKQMAIKADVPIIPGVDHAVHSEKEVIEIAEKVGYPVMLKASNGGGGRGMRIVHTAEDMP 202

Query: 152 LDLLQSSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            +  ++   +          + +       +   ++GD   +V  +            K 
Sbjct: 203 KEYAEARDESKKAFGDDQIFIEKYLKSPKHIEVQIIGDNYGNVVHLYDRDCSVQRRHQKV 262

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +P     +  K +   +    + +G R     +FL D      +++E+N +
Sbjct: 263 VEYAPAFSIPE----ETRKVIFDSSLRLAKTVGYRNAGTLEFLVDA-DNNPYFIEMNPR 316


>gi|167748875|ref|ZP_02421002.1| hypothetical protein ANACAC_03649 [Anaerostipes caccae DSM 14662]
 gi|167651845|gb|EDR95974.1| hypothetical protein ANACAC_03649 [Anaerostipes caccae DSM 14662]
          Length = 1153

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/239 (13%), Positives = 80/239 (33%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ +++  +      D      +G   E+       E   I +            DK+ 
Sbjct: 66  LDI-KTIIRIAKEKNVDAIHPG-YGFLSENPEFVDACERHGITFIGPTSDIMRAMGDKIS 123

Query: 96  SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SKQ+     VP+ P +       +  ++    +  P ++K   GG   G+ ++   + +P
Sbjct: 124 SKQMAIKADVPIIPGVDHAVYSEKEVIEIAEKVGYPVMLKASNGGGGRGMRIVHTAEDMP 183

Query: 152 LDLLQSSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            +  ++   +          + +       +   ++GD   +V  +            K 
Sbjct: 184 KEYAEARDESKKAFGDDQIFIEKYLKSPKHIEVQIIGDNYGNVVHLYDRDCSVQRRHQKV 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +P     +  K +   +    + +G R     +FL D      +++E+N +
Sbjct: 244 VEYAPAFSIPE----ETRKVIFDSSLRLAKTVGYRNAGTLEFLVDA-DNNPYFIEMNPR 297


>gi|308063748|gb|ADO05635.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           Sat464]
          Length = 1085

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSLTIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQYMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +   I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPKILDEIERVSAKIALHLGVVGLLNIQFAV--HDNTLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|239939923|ref|ZP_04691860.1| carbamoyl phosphate synthase large subunit [Streptomyces
           roseosporus NRRL 15998]
 gi|239986408|ref|ZP_04707072.1| carbamoyl phosphate synthase large subunit [Streptomyces
           roseosporus NRRL 11379]
 gi|291443354|ref|ZP_06582744.1| carbamoyl-phosphate synthase large chain [Streptomyces roseosporus
           NRRL 15998]
 gi|291346301|gb|EFE73205.1| carbamoyl-phosphate synthase large chain [Streptomyces roseosporus
           NRRL 15998]
          Length = 1102

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHENGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKEKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDVGIAIIREVGVDTGGCNIQFAIDPTDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|229091613|ref|ZP_04222818.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
 gi|228691762|gb|EEL45512.1| D-alanine--D-alanine ligase [Bacillus cereus Rock3-42]
          Length = 76

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
          + V+MGG+SSE++VS+ +G    + L+   +++  I ++    + L   +  L     H
Sbjct: 3  VGVIMGGVSSEKQVSIMTGNEMIAHLDKNKYEIVPITLNEK--MDLIEKRKTLILRCSH 59


>gi|299138478|ref|ZP_07031657.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX8]
 gi|298599724|gb|EFI55883.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX8]
          Length = 1094

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 98/321 (30%), Gaps = 42/321 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---------- 47
           G S+E +    SG     AL+  G++V  +         D + +    +           
Sbjct: 21  GQSAEFD---YSGTQACKALKAEGYEVVLVNSNPASIMTDPELADRTYIEPLTLKYVEEI 77

Query: 48  ----------HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK 93
                               + G    +  V      +LE   +    + + A   + D+
Sbjct: 78  LRVEVEMMAGKEGVFAVLPTVGGQTALNLAVDLADAGVLEKYGVELIGAKLEAIKKAEDR 137

Query: 94  MRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +  K  ++  G+ +  S  I   R  ++    +  P VI+P       G  +    + + 
Sbjct: 138 LLFKDAMNKIGLDMPKSMLINNLRDGIEFAAKLGFPVVIRPSFTLGGSGGGIAYNREELM 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L +    +   + L+E+ V G +     +     D   I     +F    +      +
Sbjct: 198 EILSRGLDLSPVHECLLEESVLGWKEYELEVVRDLNDNVIIICSIENFDPMGVHTGDSIT 257

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                     +          +  +     G S   F  +P + ++  +E+N  P ++  
Sbjct: 258 VAPAQTLTDREYQVMRDAAIAVIREIGVETGGSNVQFAVNPQNGRMTVIEMN--PRVSRS 315

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
           S     +   G+   ++   +
Sbjct: 316 S--ALASKATGFPIAKIAARL 334


>gi|291336709|gb|ADD96250.1| hypothetical protein [uncultured organism MedDCM-OCT-S08-C1388]
          Length = 431

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 87/259 (33%), Gaps = 10/259 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMR 95
           R++  ++A  KPD     + G    +         ILE   +    + + +  ++ D+  
Sbjct: 18  RNIEKIIAIEKPDAILPTMGGQTALNTTLDLNRHKILEKYNVEIIGASVDSIDMAEDREL 77

Query: 96  SKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            K  ++  G+    + +   F      Q  I  P +I+P       G  +    Q     
Sbjct: 78  FKNAMTDIGLETPRAYVAKDFDKALVIQKDIGYPIIIRPSFTLGGSGGGIAYNKQDFEKI 137

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + +    +  +++L+E+ V G +     +     D   I     +     +      +  
Sbjct: 138 VKRGLDLSPTNEVLLEESVIGWKEFEMEVVRDKNDNCIIVCSIENLDPMGVHTGDSITIA 197

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
                   +      +   +  +     G S   F  +P + K++ +E+N  P ++  S 
Sbjct: 198 PAQTLTDKEYQNLRNQSIQVLRKIGVDTGGSNVQFAINPDNGKIYVIEMN--PRVSRSS- 254

Query: 274 FPEMAAYAGYSFRELLLWM 292
               +   G+   ++   +
Sbjct: 255 -ALASKATGFPIAKVAAKL 272


>gi|116251848|ref|YP_767686.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115256496|emb|CAK07580.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 451

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+ +K      G+PV P  
Sbjct: 78  DAVHPG-YGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V K +  +      + +      G+
Sbjct: 137 DGEVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGN 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 197 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 255 MKIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 303

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 304 ITGI---DLVHEQIRVAS 318


>gi|329113707|ref|ZP_08242482.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acetobacter
           pomorum DM001]
 gi|326696970|gb|EGE48636.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acetobacter
           pomorum DM001]
          Length = 1179

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 56/183 (30%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V   +  +       S     +      +++       
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMQVCHNETELRDCFAAVSRMGGNNFGDARVFLEKFIACAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +        +  +         L+  +       PA    D  ++  +  A     A+ 
Sbjct: 207 HVEVQIFGDGKGNILTLGERDCSLQRRNQKVIEETPAPGLSDTTRQGLREAARALGSAVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA------GYSFRELLLWMV 293
                  +F++D  S + ++LE+N +              +       G    +L+ WMV
Sbjct: 267 YESAGTVEFIYDTESSEFYFLEVNTR----------LQVEHCVTEEVFGI---DLVEWMV 313

Query: 294 EDA 296
             A
Sbjct: 314 RQA 316


>gi|255075411|ref|XP_002501380.1| carbamoyl-phosphate synthase [Micromonas sp. RCC299]
 gi|226516644|gb|ACO62638.1| carbamoyl-phosphate synthase [Micromonas sp. RCC299]
          Length = 1078

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L   G+ V  ++ + +                     V  +L   KPD    
Sbjct: 19  SGTQACKSLRAEGYDVVLLNSNPATIMTDPETANRTYVGPMTPELVEQILIKEKPDALLP 78

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +         ILE   +    + + A   + D+   K+ +   G+   PS  
Sbjct: 79  TMGGQTALNLTKTLAENGILEKHGVELIGAKLDAINKAEDRQLFKEAMEKIGLKTPPSGT 138

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +     + ++ S P +I+P       G  +    +     +    + +   Q+LIE
Sbjct: 139 ANNWDEAVEIADYIGSFPLIIRPAFTLGGSGGGIAYNMEEFKTIVTSGLNASTTTQVLIE 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 199 KSLLGWKEYELEVMRDLADNVVIVCSIENLDPMGVHTGDSITIAPAQTLTDKEYQRLRDA 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S      +P   ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 259 SVDIIREIGVECGGSNVQMAVNPADGELMIIEMN--PRVSRSS--ALASKATGFPIAKMA 314

Query: 290 LWM 292
             +
Sbjct: 315 AKL 317



 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 20/173 (11%), Positives = 58/173 (33%), Gaps = 11/173 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +++P        + ++  D  +   +  +   +    +L+++Y++       
Sbjct: 709 ANNIGYPVMVRPSFVLGGRAMEIVSSDADLKRYIRTAVEVDPEKPVLVDKYLNNATELDV 768

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
                      + +     +  +    S +S   +P +   +     ++       + +G
Sbjct: 769 --DALCDAEGNVVIAGIMEHIEQAGVHSGDSACSIPTQTIPESSLATIRDWTPKVAKRLG 826

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FRELL 289
             G+    +   P    V+ +E N +   T     P +A   G+    +  L+
Sbjct: 827 VVGLINIQYAVIP-DGTVYIIEANPRASRT----VPFVAKAIGHPIAKYASLV 874


>gi|85705185|ref|ZP_01036285.1| carbamoyl-phosphate synthase, large subunit [Roseovarius sp. 217]
 gi|85670507|gb|EAQ25368.1| carbamoyl-phosphate synthase, large subunit [Roseovarius sp. 217]
          Length = 1089

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEVVARIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTALAVDDMGVLKKFGVELIGANRQAIEMAEDRKLFREAMDRLGIENPKATI 138

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N        +     P +I+P       G  V                 +   Q+LI++
Sbjct: 139 ANNMDECMAAIDYVGLPAIIRPAFTLGGTGGGVAYNRDDYIHYCKTGLDASPVSQILIDE 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 199 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNGS 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 259 IAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 314

Query: 291 WM 292
            +
Sbjct: 315 KL 316



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 101/316 (31%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC------ASA---LEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+          A   L  AG++   I         D D S 
Sbjct: 554 VVILGGGPN-------RIGQGIEFDYCCCHACFSLSKAGYETIMINCNPETVSTDYDTSD 606

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 607 RLYFEPLTFEHVMEILSKEQENGTLHGVIVQFGGQTPLKLARALEAEGIPILGTTPDAID 666

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 667 LAEDRERFQALVTKLGLKQPHNGIASTDAQALAIAEEIGFPLVIRPSYVLGGRAMEIVRD 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE     + D         +   +       
Sbjct: 727 MGHLERYISEAVVVSGDSPVLLDSYLSGAIECDVDALCDGKRVHVAGIMQHIEEAG---V 783

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +      E+++       A+   G+    F        ++ +E+N +
Sbjct: 784 HSGDSACSLPPYSLSDVTIAEIKKQTEALALALNVVGLMNVQFAVKGED--IYLIEVNPR 841

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 842 ASRT----VPFVAKAT 853


>gi|332982136|ref|YP_004463577.1| hypothetical protein Mahau_1566 [Mahella australiensis 50-1 BON]
 gi|332699814|gb|AEE96755.1| protein of unknown function DUF201 [Mahella australiensis 50-1 BON]
          Length = 329

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 80/269 (29%), Gaps = 33/269 (12%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
              DAG+    +D+ R+ G+ L          +  G F      +   E        S  
Sbjct: 61  NFNDAGYVDVLLDICRNEGVSL-------LIPLHEGEFNVLLQNRRRFEDAGCRLLLSSE 113

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              ++  DK  +       GV    +IL              P  IKP  G  S     I
Sbjct: 114 EVISICQDKYNTFLFFQQNGVNTPATILPEEIEYR---KTEFPLFIKPRNGMGSRYAYRI 170

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             ++ +   +            ++++++DG E T  V+ D    V      +        
Sbjct: 171 TDERQLRFFIEYVPC------PIVQEFIDGTEYTVDVLCDMEGQVISTVPRERIEVKDGE 224

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                        K   ++            + +   G      + D     +F++EIN 
Sbjct: 225 ISKGRTVKDWRIIKATTEV-----------AEKLKAIGPLTIQCIIDKNDN-IFFIEINP 272

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + G       P      G ++ +LL  M+
Sbjct: 273 RFG----GGVPLAIEA-GVNYPDLLAKML 296


>gi|256113452|ref|ZP_05454293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|265994840|ref|ZP_06107397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
 gi|262765953|gb|EEZ11742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 3 str. Ether]
          Length = 452

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------------VDRSVGLVLAHL------- 49
                 A ++ G K   +                         R   L +  +       
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIYQIVAACEIT 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     ILE  +I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAIHPG-YGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +            I  P +IK   GG   G+ V +  + +P+ L  + S     +
Sbjct: 133 GSDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   VMGD + +   +            +             + 
Sbjct: 193 GDDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALN 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 249 AEAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|302517956|ref|ZP_07270298.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp.
           SPB78]
 gi|302426851|gb|EFK98666.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp.
           SPB78]
          Length = 1104

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD+   
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDVLLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+   K VV      +     
Sbjct: 89  TLGGQTALNTAISLHDAGTLEKYGVELIGANVEAINKGEDRDLFKGVVKEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|255567518|ref|XP_002524738.1| acetyl-CoA carboxylase, putative [Ricinus communis]
 gi|223535922|gb|EEF37581.1| acetyl-CoA carboxylase, putative [Ricinus communis]
          Length = 742

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ +++           +         +    ++       
Sbjct: 187 ADKIGYPVLIKPTHGGGGKGMRIVQSPNEFVDSFFGAQREAAASFGINTILLEKYITQPR 246

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +           +         ++          PA   +D ++  + + A  A +A+G
Sbjct: 247 HIEVQVFGDKYGNILHLYERDCSVQRRHQKIIEEAPAPNIMDEFRSHLGQAAVSAAKAVG 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D +S K +++E+N +
Sbjct: 307 YYNAGTVEFIVDIVSGKFYFMEMNTR 332


>gi|1814252|gb|AAB41856.1| D-Alanine:D-Alanine ligase [Streptococcus salivarius]
          Length = 197

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 1/139 (0%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+GI   + +  +   +  +  ++    +        IE+     
Sbjct: 59  KLTFPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVVAREIEVGILGN 118

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                      V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G
Sbjct: 119 TTVKTTNPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRVYAAKAFRALGGCG 178

Query: 243 ISRSDFLFDPLSRKVFWLE 261
           ++R DF        ++  E
Sbjct: 179 LARCDFFLTE-DGAIYLNE 196


>gi|87303373|ref|ZP_01086161.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           5701]
 gi|87282021|gb|EAQ73983.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           5701]
          Length = 1101

 Score = 57.2 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 51/314 (16%), Positives = 100/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL D G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALRDEGYEVVLVNSNPASIMTDPEMADRTYIEPLTPDVVRQVIELERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAEDGTLERFGVELIGANLQAIQKAEDRRLFKEAMERIGVAVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                      + + + P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSLEEAERVGEEIGTYPRIIRPAFTLGGSGGGIAYNPEEFQAFCKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLIGWKEFELEVMRDLADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVETGGSNIQFAINPANGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|193212186|ref|YP_001998139.1| carbamoyl-phosphate synthase L chain ATP-binding [Chlorobaculum
           parvum NCIB 8327]
 gi|193085663|gb|ACF10939.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobaculum
           parvum NCIB 8327]
          Length = 494

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIELADATYIEPITPEYVRKIIEKEKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+     +LE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVKLAESGVLERHGVELIGAKLRAIRKAENREFFGDAMRKLGLEMAKGFF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       +    I  P VI+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEAKEALDEIGLPIVIRPSFTLGGTGGGFAETKADYYDVVRRGLAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 SLIGWKEYELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IKIIREIGVETGGSNIQFSINPKDGRIVIIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|308184703|ref|YP_003928836.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           SJM180]
 gi|308060623|gb|ADO02519.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           SJM180]
          Length = 1085

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/252 (11%), Positives = 85/252 (33%), Gaps = 10/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   + D    ++H        +   L  ++ P   +      ++ D+ +    + 
Sbjct: 625 VKTIIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLK 682

Query: 102 SCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              +    + +           ++I  P +++P        + +++  + +   L   + 
Sbjct: 683 ELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTH 742

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                          +E    +  DA  D  E+ +     +  E    S +S   +P+ +
Sbjct: 743 ALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEAGIHSGDSACFIPSTL 802

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            ++I  E++R++      +G  G+    F        ++ +E+N +   T     P ++ 
Sbjct: 803 RVEILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNPRASRT----VPFLSK 856

Query: 280 YAGYSFRELLLW 291
             G    ++   
Sbjct: 857 ALGVPLAKVATR 868


>gi|297623352|ref|YP_003704786.1| acetyl-CoA carboxylase, biotin carboxylase [Truepera radiovictrix
           DSM 17093]
 gi|297164532|gb|ADI14243.1| acetyl-CoA carboxylase, biotin carboxylase [Truepera radiovictrix
           DSM 17093]
          Length = 445

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 32/278 (11%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---VGLVLAHLKPDL-----------AFNVL------ 58
                 A  + G K  Q+        + ++LA     +             N+L      
Sbjct: 14  ALRVLRAARELGIKTVQVYSTADENSLPVLLADESICIGPPASAGSYLNVRNLLSAALVT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+       E   I +            DK  +++V     VPV P 
Sbjct: 74  GAEAIHPGYGFLSENAEFAQKCEEHGITFIGPRPENIRAIGDKASARRVAQESDVPVVPG 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P ++K   GG   G+ +++ ++ +  +L  +          
Sbjct: 134 SGALASLDEAKAFAAKIGYPVILKASAGGGGRGMRIVRSEEELARNLANAQEEARAAFGN 193

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            E Y++        +        E  V         ++          P+ +   +  E+
Sbjct: 194 GEMYMEKFLEEPRHVEIQVFGDGEGHVMHFFDRDCSIQRRYQKVLEEAPSTLDTALRLEI 253

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A    + I  RG    +FL D      ++ E+N +
Sbjct: 254 AEAAVRLARHINYRGAGTCEFLVD-RDGSFYFSEMNTR 290


>gi|17983030|gb|AAL52244.1| biotin carboxylase [Brucella melitensis bv. 1 str. 16M]
          Length = 459

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 21  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 80

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P 
Sbjct: 81  GADAIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V +  + +P+ L  + S     + 
Sbjct: 141 SDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFG 200

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 201 DDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNA 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 257 EAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 298


>gi|332158577|ref|YP_004423856.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus sp. NA2]
 gi|331034040|gb|AEC51852.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus sp. NA2]
          Length = 429

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D L +   +   +         +        +    +                 
Sbjct: 88  E-AINLDALFEFEKDGYFVVPNAKATWIAMHRERLRETLVKEAKVPTSRYMYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIEL 177
           ++   I  P   K +   S  G   ++  + IP    ++ +   G  + +I +     ++
Sbjct: 147 EACEKIGYPCHTKAIMSSSGKGSYFVRGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDI 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +     D     V          +          PA+I     +EV R+A      
Sbjct: 207 EVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDV 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 267 LGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|330507164|ref|YP_004383592.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
 gi|328927972|gb|AEB67774.1| carbamoyl-phosphate synthase, large subunit [Methanosaeta concilii
           GP-6]
          Length = 1080

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-----------FNV 57
           SG     +L + G +V  +         D D +  + +  L+PD+               
Sbjct: 29  SGSQACKSLREEGIEVVLVNSNPATIMTDPDTADKVYIEPLEPDIVAKIIEKERPDGIIA 88

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVPVCPS 110
             G      +   + E+  +   +  +L +++         D  +         VP   +
Sbjct: 89  GIGGQTGLNITSELAEMGILEKYNVEVLGTSVKSIQEAEDRDLFKQAMQKVGEPVPESRA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++    +  P V++P       G  + K  + +          +   Q+L+E+
Sbjct: 149 VNTLDEALEVMEELGLPLVVRPAYTLGGSGGGIAKTREELLQICDLGLKRSRISQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G       +   S D         +     +          +      +I + ++  
Sbjct: 209 SVGGWTELEYEVMRDSNDTCITICNMENMDPMGIHTGESIVVTPIQTLTDHEI-QMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G     F       +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 AINIIRALKIEGGCNIQFAV--KDGEYRVIEVN--PRVSRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|209549135|ref|YP_002281052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209534891|gb|ACI54826.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 449

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+ +K      G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V K +  +      + +      G+
Sbjct: 135 DGEVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADLIEAWSTARTEAAAAFGN 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 195 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 253 MKIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 301

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 302 ITGI---DLVHEQIRVAS 316


>gi|116070931|ref|ZP_01468200.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Synechococcus sp. BL107]
 gi|116066336|gb|EAU72093.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Synechococcus sp. BL107]
          Length = 1106

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPGMADRTYIEPLTPEVVAKVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLDRFGVELIGADLQAIQKAEDRLLFKQAMERIGVSVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASTQEEAETVGAEIGSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPANGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|15645535|ref|NP_207711.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           26695]
 gi|22095480|sp|O25577|CARB_HELPY RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|2314054|gb|AAD07963.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) (pyrAb)
           [Helicobacter pylori 26695]
          Length = 1085

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIATIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 TELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPKNGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHALEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAVHQ--NSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|288957103|ref|YP_003447444.1| carbamoyl-phosphate synthase large chain [Azospirillum sp. B510]
 gi|288909411|dbj|BAI70900.1| carbamoyl-phosphate synthase large chain [Azospirillum sp. B510]
          Length = 1081

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  +L   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPAVVAKILEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE L +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMALSDDGTLERLGVEMIGAKRDVIAKAEDRILFRDAMDKLGLESPKSRM 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   T     L     P +I+P    +  G  +          +      +   ++LIE+
Sbjct: 149 VRTLTEAMDALEFVGLPAIIRPSFTLAGTGGGIAYNRAEFEDIVRGGLRASPVGEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDGADNCIIICAIENIDPMGVHTGDSITVAPSLTLTDKEYQIMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVNPANGRLIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 43.7 bits (101), Expect = 0.030,   Method: Composition-based stats.
 Identities = 28/163 (17%), Positives = 58/163 (35%), Gaps = 10/163 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + ++     +   +  +   +  + +LI+ Y  D IE+  
Sbjct: 712 ASRIGFPVVIRPSYVLGGRAMEIVHDMAGLQRYMGTAVQVSGKNPVLIDSYLQDAIEVDV 771

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D         +   +           ++  + P  +P +   E+ R +    +A+ 
Sbjct: 772 DVVCDGETVYVAGVMEHIEEAGIHSG---DSACALPPYSLPAETIAEINRQSDALARALK 828

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             G+    F     +  V+ LE+N +   T     P +A   G
Sbjct: 829 VVGLMNVQFAV--QAGTVYILEVNPRASRT----VPFVAKATG 865


>gi|308172102|ref|YP_003918807.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus
           amyloliquefaciens DSM 7]
 gi|307604966|emb|CBI41337.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus
           amyloliquefaciens DSM 7]
          Length = 384

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 80/273 (29%), Gaps = 34/273 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +AV     S E         A  +A      K   ID+     V  V+   KPDL    +
Sbjct: 31  VAV----DSYEH------APAMQAA-----HKSYVIDMLDKAQVREVIEKEKPDLIVPEV 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ L         IP   +  L       +  + + +                  
Sbjct: 76  EAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLHLPT-AGYEFANTYEECK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P V+KPL   S  G  V +    +               +   +  +G  + 
Sbjct: 135 EAAETIGFPCVVKPLMSSSGKGQSVCRSASELKS--------CWDMAMEGGRVKNGRVI- 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V  ++  S+                  P  +     +E + +A  
Sbjct: 186 VEEFIPFESEITLLTVHAANGTSFCAPIGHEQKDGDYMESWQPHHMTEQQVEEAKHIAKS 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +G  G+   +        KV++ E++ +P
Sbjct: 246 ITDELGGYGLFGVELFLTQ--DKVYFSEVSPRP 276


>gi|225870647|ref|YP_002746594.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           equi 4047]
 gi|254813603|sp|C0M756|CARB_STRE4 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225700051|emb|CAW94096.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           equi 4047]
          Length = 1058

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/291 (10%), Positives = 88/291 (30%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+   +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEEVMNVIELEQPKGVILQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +   Q     + I  T    L  A   +             P   +       +++  
Sbjct: 639 AINLAEQLTKAGVPILGTQLEDLDCAEDRELFEKALKELGIPQPPGKTATNEAEALEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 AIGFPVLVRPSYVLGGRAMEIVENENDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++          + C G
Sbjct: 759 SDGQSVLIPGIMEHIERAG---VHSGDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 816 MMNIQFVI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 860



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYQVVLVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +               +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNMAMELSKAGILQELGVELLGTTLSAIDQAEDRDLFKQLMKELGEPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   ++ +   +      +   Q LIE+ 
Sbjct: 150 TTVEAAIGFANAIGYPVIVRPAFTLGGTGGGICSNEEVLRDIVENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCSMENFDPVGIHTGDSIVFAPTQTLSDVE-NQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRALKIEGGCNVQLALDPNSFSYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|295839949|ref|ZP_06826882.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp.
           SPB74]
 gi|197696784|gb|EDY43717.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp.
           SPB74]
          Length = 1104

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++A  +PD+   
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDVLLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+   K VV      +     
Sbjct: 89  TLGGQTALNTAISLHDAGTLEKYGVELIGANVEAINKGEDRDLFKGVVEEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|27464135|gb|AAO15987.1|AF514870_3 CarB [Lactobacillus plantarum]
          Length = 1020

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 90/293 (30%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIVVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAHQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQATGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG   L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVFGGRAMAIVHNDHELTPVIKSAVAAGHGAPTLMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRATHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKALMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNADELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++  A
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGCNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|120556352|ref|YP_960703.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter aquaeolei
           VT8]
 gi|120326201|gb|ABM20516.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter aquaeolei
           VT8]
          Length = 448

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G K   +   VDR +  V LA            D   N+          
Sbjct: 16  ALRILRACKELGIKTVAVHSQVDRDLMHVRLADESVCIGPNSATDSYLNIPTIISAAEVT 75

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ + + +   GVP  P 
Sbjct: 76  DSVGIHPGYGFLAENADFAEQVEKSGFRFIGPRAETIRLMGNKVSAIEAMKKAGVPTVPG 135

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +  T+     I  P +IK   GG   G+ V+  + ++   +  + S      
Sbjct: 136 SDGPLTDDDERTLKLAKQIGYPVMIKAASGGGGRGMQVVHSEAALLKAVQITQSEAKNAF 195

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++    T   +    L      V         ++  +       P   I  +  
Sbjct: 196 GDPTVYLEKFLETPRHVEVQVLADMHGNVIHLGDRDCSMQRRNQKVIEEAPAPNINQESR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   +    A + IG  G    +FL+     + +++E+N +
Sbjct: 256 ERTLKACVDACKEIGYVGAGTFEFLY--QDGEFYFIEMNTR 294


>gi|212534414|ref|XP_002147363.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Penicillium marneffei ATCC 18224]
 gi|210069762|gb|EEA23852.1| 3-methylcrotonyl-CoA carboxylase subunit alpha (MccA), putative
           [Penicillium marneffei ATCC 18224]
          Length = 712

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/238 (15%), Positives = 83/238 (34%), Gaps = 13/238 (5%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + +A  +   A +  +G   E+           + +      A     DK RS
Sbjct: 95  YLDGDRIIEIAKREGCQAIHPGYGFLSENSEFAQKCANAGLVFIGPPPKAIEDMGDKSRS 154

Query: 97  KQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+++++ GVP  P                  +  P +IK +KGG   G+ +++       
Sbjct: 155 KEIMTTAGVPCVPGYHGTNQDPLFLEAEADKMEYPVLIKAVKGGGGKGMRIVRSKDEFQD 214

Query: 153 DLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            L  + +     + +   L+ +       +   V  D   +   +            K  
Sbjct: 215 QLRSAKNEALNSFGNDHMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKIL 274

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +    LP  +  D++ + +  A      +G  G    +F+FD  +   +++E+N +
Sbjct: 275 EESPAPHLPDAVRKDLWDKARAAALA----VGYEGAGTVEFIFDNDTGNFYFMEMNTR 328


>gi|161511139|ref|NP_539980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. 16M]
 gi|225852418|ref|YP_002732651.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis ATCC 23457]
 gi|256044579|ref|ZP_05447483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256264084|ref|ZP_05466616.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|260563930|ref|ZP_05834416.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|265991003|ref|ZP_06103560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|225640783|gb|ACO00697.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           ATCC 23457]
 gi|260153946|gb|EEW89038.1| acetyl-CoA carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|263001787|gb|EEZ14362.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|263094288|gb|EEZ18149.1| acetyl-CoA carboxylase [Brucella melitensis bv. 2 str. 63/9]
          Length = 452

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P 
Sbjct: 74  GADAIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V +  + +P+ L  + S     + 
Sbjct: 134 SDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 194 DDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNA 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 250 EAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|300813584|ref|ZP_07093915.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus sp. oral
           taxon 836 str. F0141]
 gi|300512332|gb|EFK39501.1| carbamoyl-phosphate synthase, large subunit [Peptoniphilus sp. oral
           taxon 836 str. F0141]
          Length = 1067

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/313 (11%), Positives = 92/313 (29%), Gaps = 37/313 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L+  G +   I+ +                       +  ++   KPD    
Sbjct: 28  SGSQAIESLKSLGIETVLINSNPATIMTDKKMADKIYIEPITIDFIEKIIKKEKPDSLLA 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          D +       +E+  T    +      D  R      +  +     
Sbjct: 88  AMGGQTGLNMAMELDKMGILKKYNIEVIGTDIDAIKKGEDRDIFRQTMKKINQPLVESEI 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            I  P V++P       G      ++ +   L      +   Q+L+E+
Sbjct: 148 VTSLEEGKRLAEKIGFPLVVRPAYTLGGTGGGFANNEEELEEILKHGLKISPVSQVLLEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G  +              + +   +       ++  +        +  ++  ++++ 
Sbjct: 208 SIKG-YMEIEFEVIRDGAGNSLIICDMENVDPVGVHTGDSIVVAPCQSLKKEVLDKLKKA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      +G +G        +P +   + +EIN  P ++  S     +   GY   ++  
Sbjct: 267 SIDIVNEVGVKGACNVQLALNPKTYDYYVIEIN--PRVSRSS--ALASKATGYPIAKVAT 322

Query: 291 WM-----VEDASC 298
            +     +++ SC
Sbjct: 323 KIATGLNLDEISC 335



 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 22  CASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNVLHG 60
              +LE   +    I                     + +  V  +L   KP        G
Sbjct: 576 AIKSLEKLNYTTIIINNNPETVSTDFDISDRLYFEPETEEDVLNILELEKPLGVILQFGG 635

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                       + ++I  T    +  A   ++        +   P    +      +  
Sbjct: 636 QTAIKLAEFLDSKGIKILGTDFDNIDKAEDRERFEELLNSLNINRPKGGGVSSVEEGIKL 695

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   +  +   L  +   +  + +LI++Y+ G E+   
Sbjct: 696 ANKLKYPLLVRPSYVLGGKGMEITHDEDQLKKYLKAAFKEDSKNPVLIDKYLLGREIEVD 755

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            + D    +     P    +       S +S  + PA       KE          + + 
Sbjct: 756 AICDGQDILI----PGIMEHLERAGVHSGDSISIYPADKLSKKSKEKILDYTKKIAKGLK 811

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G+    F+       ++ +E+N +   T     P ++  +G    EL    +
Sbjct: 812 ALGMINIQFI--EYMDDIYIIEVNPRASRT----VPYISKVSGIPIVELATRAI 859


>gi|295110643|emb|CBL24596.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus obeum
           A2-162]
          Length = 1071

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 92/291 (31%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  G++   +         D D              V  ++   KPD A     G   
Sbjct: 584 AFKKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVENIVNIEKPDGAVVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   ++I  T +  + +A   +             P   ++        +   
Sbjct: 644 IKLTEALMKMGVKILGTSAEDVDAAEDRELFDEILEQCQIPRPKGHTVFTAEEAKKAASE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMRIAVSDEDVEEYIGIINQIAQEHPILVDKYLMGKEIEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
           D +  +     P    +       S +S  V PA+      K+          +A+   G
Sbjct: 764 DGNDILI----PGIMEHIERAGIHSGDSISVYPAQTISKKAKDTIAEYTRRLAKALHVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 820 MINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 864



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACRSLKEEGMEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEQPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + +         V     +
Sbjct: 90  LGGQAGLNLAMELEEKGFLKEHNVRLIGTTAETIKKAEDRQEFKDTMEKIGEPVAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 TTVEDGVAFTRTIGYPVVLRPAYTLGGSGGGIANNEFELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|224372221|ref|YP_002606593.1| carbamoyl phosphate synthase large subunit [Nautilia profundicola
           AmH]
 gi|223589941|gb|ACM93677.1| carbamoyl-phosphate synthase, large subunit [Nautilia profundicola
           AmH]
          Length = 1090

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 32/300 (10%), Positives = 85/300 (28%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG   A  L+  G++V  ++ + +                     V  ++     D    
Sbjct: 29  SGVQAAKTLKSLGYRVVLVNSNPATIMTDPEFADATYIEPITADVVAKIIQKENVDAILP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       + +LE +E    +   +      ++ +         +    +  
Sbjct: 89  TMGGQTALNVAMEMYEKGMLEGIEFLGANPEAIKKGEDREEFKQAVERIGLDLAKSETAH 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                ++    I  P +++       LG  V    +            +  +++ I + +
Sbjct: 149 TLDEAVEIAKNIGFPLIVRAAYTLGGLGSGVAYNMEEFKALAKTGIEASPINEIEILESM 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  K       
Sbjct: 209 LGWKEYEMEVIRDRNDNCIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQKMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P + ++  +E+N  P ++  S     +   GY   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAVNPENGRMIVIEMN--PRVSRSS--ALASKATGYPIAKIATLL 324



 Score = 37.9 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 29/262 (11%), Positives = 79/262 (30%), Gaps = 10/262 (3%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
            V   +      V  V+   +PD       G                I  T + ++ +A 
Sbjct: 607 DVLYFEPITFERVRNVVELERPDGVIVQFGGQTPLKLAKGLTRINANIIGTSAEVIDTAE 666

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             +K  +         P   +             I  P +++P        + ++  +  
Sbjct: 667 DREKFSAFIEELGLNQPANGTAFTKEEAYKIAENIGYPVLVRPSYVLGGRAMRIVYNEDE 726

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   + ++ S ++   +LI++++D   +   V   +      I           +     
Sbjct: 727 LKAYMDEAVSVSNESPVLIDKFLD-RAIELDVDAISDTKEVYIGGIMQHIEEAGIHSGDS 785

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
             +    +     + +       +A + +G +G+    +       K++ +E+N +   T
Sbjct: 786 ACSLPTVSISEDKLKEIENATKQIALK-LGVKGLLNIQYALHR--DKLYLIEVNPRASRT 842

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 843 ----VPFVSKATGLPLAKVATR 860


>gi|254470155|ref|ZP_05083559.1| carbamoyl-phosphate synthase, large subunit [Pseudovibrio sp.
           JE062]
 gi|211960466|gb|EEA95662.1| carbamoyl-phosphate synthase, large subunit [Pseudovibrio sp.
           JE062]
          Length = 1120

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G+++  +         D D             +V  ++A  KPD    
Sbjct: 29  SGTQACKALRDEGYRIILVNSNPATIMTDPDLADATYIEPITADAVEKIIAKEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--------- 103
            + G        +   + +L+   +    +       + D+ + +  +            
Sbjct: 89  TMGGQTALNCALELDRKGVLKAHGVEMIGAKADVIDKAEDREKFRAAMDKIGLENPRAAI 148

Query: 104 -----------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                       +            M     I  P +I+P       G  V    +    
Sbjct: 149 ASSPPILDDEGNITGYDRGAGYAEAMRQLDSIGLPAIIRPAFTLGGTGGGVAYNREEYEQ 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q+LI++ + G +     +   + D   I     +     +      + 
Sbjct: 209 IVRSGIDASPNGQVLIDESLLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  +P + ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVNPDNGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344



 Score = 37.2 bits (84), Expect = 2.9,   Method: Composition-based stats.
 Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 6/45 (13%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           +   G+    F       +++ LE+N +   T     P +A   G
Sbjct: 869 LNVVGLMNVQFAI--KDGEIYVLEVNPRASRT----VPFVAKTIG 907


>gi|119478547|ref|ZP_01618490.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [marine gamma proteobacterium HTCC2143]
 gi|119448451|gb|EAW29700.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [marine gamma proteobacterium HTCC2143]
          Length = 1526

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 36/222 (16%), Positives = 82/222 (36%), Gaps = 16/222 (7%)

Query: 56   NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              LH   G   E+    ++     I +      +     +K  + Q V +  VPV P   
Sbjct: 1023 PALHPGIGFLSENPNFASLCVNNGINFIGPSADSMMTMGNKSNAIQTVQANNVPVVPGSH 1082

Query: 113  ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                     ++  + I  P ++K + GG   GI V++    +       SS     + +G
Sbjct: 1083 GILASCEQAINIANDIGYPVLLKAVHGGGGKGIQVVRSQDEMLKYYGMISSEARAAFGNG 1142

Query: 164  DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            D  L +       +   ++ D+  +   + +          K    + + +LP     ++
Sbjct: 1143 DLYLEKFVTSMRHIEVQLLRDSHGNSRVLGMRDCSVQRNNQKVVEESGSTMLPE----EL 1198

Query: 224  YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++V         A+   G    +F+++  + +V+++E+N +
Sbjct: 1199 KQKVFDYTLSIAGAVDYTGAGTVEFIYNLDANEVYFMEMNTR 1240


>gi|296269334|ref|YP_003651966.1| carbamoyl-phosphate synthase large subunit [Thermobispora bispora
           DSM 43833]
 gi|296092121|gb|ADG88073.1| carbamoyl-phosphate synthase, large subunit [Thermobispora bispora
           DSM 43833]
          Length = 1092

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 83/308 (26%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ GF+V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACRVLKNEGFRVILVNSNPATIMTDPEFADATYVEPITPEMVEKIIAKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
            L G         +     L        G    A+   + R +       V         
Sbjct: 89  TLGGQTALNTAVALHEAGVLERYGVEVIGASIEAIQAGENRERFKEIVARVAEKHGLNAE 148

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        + +   +  P V++P       G  +   ++ +          +   
Sbjct: 149 SARSVICHSLDDCLRAAEELGYPLVVRPSFTLGGAGSGLAHDEEELRRIAGAGLDASPTH 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ V G +     +     D   +     +     +      +          +  
Sbjct: 209 EVLLEESVLGWKEFELEVMRDRNDNVVVVCSIENIDPMGVHTGDSVTVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F   P + ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 NMRDVAIAVIREVGVDTGGCNIQFAVHPETGRMVVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|218529225|ref|YP_002420041.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           chloromethanicum CM4]
 gi|240137593|ref|YP_002962064.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens AM1]
 gi|254560065|ref|YP_003067160.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens DM4]
 gi|218521528|gb|ACK82113.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           chloromethanicum CM4]
 gi|240007561|gb|ACS38787.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens AM1]
 gi|254267343|emb|CAX23175.1| acetyl CoA carboxylase, biotin carboxylase subunit
           [Methylobacterium extorquens DM4]
          Length = 455

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L    I +         +  DK+ +K+     G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLAHHNIGFIGPKAEHIRIMGDKIEAKRTAKRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +            I  P ++K   GG   G+ V + +  +   L  + +     +  
Sbjct: 135 EGGVTDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSESELEQALDMARTEAKAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   ++GD       +A           K      +  L   +  +
Sbjct: 195 DAVYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGSPALNEAMRAE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I          A + +G  G    +FL+     + +++E+N +
Sbjct: 255 IGGICA----NAMRELGYLGAGTIEFLY--EDGRFYFIEMNTR 291


>gi|163850528|ref|YP_001638571.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           extorquens PA1]
 gi|163662133|gb|ABY29500.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           extorquens PA1]
          Length = 455

 Score = 56.8 bits (135), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 33/223 (14%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L    I +         +  DK+ +K+     G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLAHHNIGFIGPKAEHIRIMGDKIEAKRTAKRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +            I  P ++K   GG   G+ V + +  +   L  + +     +  
Sbjct: 135 EGGVTDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSESELEQALDMARTEAKAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   ++GD       +A           K      +  L   +  +
Sbjct: 195 DAVYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGSPALNEAMRAE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I          A + +G  G    +FL+     + +++E+N +
Sbjct: 255 IGGICA----NAMRELGYLGAGTIEFLY--EDGRFYFIEMNTR 291


>gi|331010019|gb|EGH90075.1| urea amidolyase-like protein [Pseudomonas syringae pv. tabaci ATCC
           11528]
          Length = 761

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|330989059|gb|EGH87162.1| urea amidolyase-like protein [Pseudomonas syringae pv. lachrymans
           str. M301315]
          Length = 1230

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|330964545|gb|EGH64805.1| urea amidolyase-like protein [Pseudomonas syringae pv. actinidiae
           str. M302091]
          Length = 772

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|320327172|gb|EFW83186.1| hypothetical protein PsgRace4_25546 [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 1302

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|302132807|ref|ZP_07258797.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           NCPPB 1108]
          Length = 1226

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|302059008|ref|ZP_07250549.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           K40]
          Length = 621

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|257486535|ref|ZP_05640576.1| hypothetical protein PsyrptA_24895 [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 355

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|300768944|ref|ZP_07078835.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|300493465|gb|EFK28642.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
          Length = 1020

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAHQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG  +L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/293 (15%), Positives = 91/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRATHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKTLMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++   
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAT 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGCNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|213971144|ref|ZP_03399263.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           T1]
 gi|301381839|ref|ZP_07230257.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           Max13]
 gi|213924133|gb|EEB57709.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           T1]
          Length = 1226

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|28871385|ref|NP_794004.1| urea amidolyase-like protein [Pseudomonas syringae pv. tomato str.
           DC3000]
 gi|28854636|gb|AAO57699.1| urea amidolyase-related protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 1226

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    + +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCAAAIKLAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|71733839|ref|YP_276110.1| urea amidolyase-like protein [Pseudomonas syringae pv. phaseolicola
           1448A]
 gi|71554392|gb|AAZ33603.1| urea amidolyase homologue [Pseudomonas syringae pv. phaseolicola
           1448A]
          Length = 1266

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|29337240|sp|Q9RLS9|CARY_LACPL RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
          Length = 1020

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAHQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG  +L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRAAHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKTLMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++  A
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGCNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|28377412|ref|NP_784304.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum WCFS1]
 gi|28270244|emb|CAD63145.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum WCFS1]
          Length = 1020

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAHQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG  +L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRAAHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKTLMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++  A
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGYNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|254555595|ref|YP_003062012.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
 gi|6006568|emb|CAB56843.1| carbamoyl-phosphate synthase large subunit [Lactobacillus plantarum
           subsp. plantarum]
 gi|254044522|gb|ACT61315.1| carbamoyl phosphate synthase large subunit [Lactobacillus plantarum
           JDM1]
          Length = 1020

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAHQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG  +L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRATHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKTLMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++  A
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGCNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|172046049|sp|Q65VI3|PURT_MANSM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 393

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 87/308 (28%), Gaps = 38/308 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYKNAPAQQVAHRSYTISMLDGEALKALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQKGFTVVPTAKATQLTMNREGIRRLAAEELGLPT-SNYQFVDNFTDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  +IK    I        +   G        V+G    
Sbjct: 143 SAVENIGIPCVVKPIMSSSGHGQSIIKSFDQIQQA--WDYAQQGGRAGAGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 + +        P  +     ++ Q++A     A+
Sbjct: 201 DYEITLLTVRHI--GGTSFLAPIGHRQQNGDYRESWQPQAMSEIALQKAQQVAEKITSAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289
           G RGI   +        +V + E++ +P   GM       +S F   A    G    E+ 
Sbjct: 259 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 315

Query: 290 LWMVEDAS 297
             ++  A+
Sbjct: 316 -NLISPAA 322


>gi|163732148|ref|ZP_02139594.1| pyruvate carboxylase [Roseobacter litoralis Och 149]
 gi|161394446|gb|EDQ18769.1| pyruvate carboxylase [Roseobacter litoralis Och 149]
          Length = 1146

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  I+++  +   +L+            E Y++ + L   
Sbjct: 151 AKQVGYPLMLKASWGGGGRGMRPIQQEDELEEKVLEGRREAEAAFGNGEGYLEKMILRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      +         ++  +       PA    +    EV +L +   + + 
Sbjct: 211 HVEVQILGDKHGDMYHLFERDCSVQRRNQKVVERAPAPYLTEAQRAEVCKLGYDICKHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    K +++E+N +
Sbjct: 271 YECAGTVEFLMDMDDGKFYFIEVNPR 296


>gi|52424475|ref|YP_087612.1| phosphoribosylglycinamide formyltransferase 2 [Mannheimia
           succiniciproducens MBEL55E]
 gi|52306527|gb|AAU37027.1| PurT protein [Mannheimia succiniciproducens MBEL55E]
          Length = 395

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/308 (13%), Positives = 87/308 (28%), Gaps = 38/308 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 26  GKEVVIELQRLGVEVIAVDRYKNAPAQQVAHRSYTISMLDGEALKALVEKERPDYIVPEV 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 86  EAIATATLVELEQKGFTVVPTAKATQLTMNREGIRRLAAEELGLPT-SNYQFVDNFTDFK 144

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  +IK    I        +   G        V+G    
Sbjct: 145 SAVENIGIPCVVKPIMSSSGHGQSIIKSFDQIQQA--WDYAQQGGRAGAGRVIVEGFVKF 202

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 + +        P  +     ++ Q++A     A+
Sbjct: 203 DYEITLLTVRHI--GGTSFLAPIGHRQQNGDYRESWQPQAMSEIALQKAQQVAEKITSAL 260

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289
           G RGI   +        +V + E++ +P   GM       +S F   A    G    E+ 
Sbjct: 261 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI- 317

Query: 290 LWMVEDAS 297
             ++  A+
Sbjct: 318 -NLISPAA 324


>gi|15611920|ref|NP_223571.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           J99]
 gi|22095543|sp|Q9ZKT2|CARB_HELPJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|4155424|gb|AAD06431.1| CARBAMOYL-PHOSPHATE SYNTHASE LARGE CHAIN [Helicobacter pylori J99]
          Length = 1085

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 87/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q     +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQRGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDGKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           + I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANAIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YQNSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|239831783|ref|ZP_04680112.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824050|gb|EEQ95618.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
          Length = 459

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 86/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 21  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 80

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE   I +         +  DK+ +K+     G+PV P 
Sbjct: 81  GADAIHPGYGFLSENAKFAEILEAHGITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +  +         I  P +IK   GG   G+ V + ++ + + L  + S     + 
Sbjct: 141 SDGGVTDDVEAARIAKEIGYPVIIKASAGGGGRGMKVARSEEDLSIALATARSEAGAAFG 200

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 201 DDAVYIEKYLEKPRHIEVQVMGDGAGNAIHLGERDCSLQ----RRHQKVWEEANSPALNA 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 257 EARDKIGMVCANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 298


>gi|182439844|ref|YP_001827563.1| carbamoyl phosphate synthase large subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|326780508|ref|ZP_08239773.1| carbamoyl-phosphate synthase, large subunit [Streptomyces cf.
           griseus XylebKG-1]
 gi|226700936|sp|B1W463|CARB_STRGG RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|178468360|dbj|BAG22880.1| putative carbamoyl-phosphate synthase large subunit [Streptomyces
           griseus subsp. griseus NBRC 13350]
 gi|326660841|gb|EGE45687.1| carbamoyl-phosphate synthase, large subunit [Streptomyces cf.
           griseus XylebKG-1]
          Length = 1102

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHDNGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKEKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  DP   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDVGIAIIREVGVDTGGCNIQFAIDPTDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|237815337|ref|ZP_04594335.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
 gi|237790174|gb|EEP64384.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus str.
           2308 A]
          Length = 459

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 21  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 80

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P 
Sbjct: 81  GADAIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V +  + +P+ L  + S     + 
Sbjct: 141 SDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFG 200

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 201 DDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNA 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 257 EAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 298


>gi|309802992|ref|ZP_07697093.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Bifidobacterium dentium JCVIHMP022]
 gi|308220459|gb|EFO76770.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Bifidobacterium dentium JCVIHMP022]
          Length = 594

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 43  LIDILHRSGADAVHPG-YGFLSEVASFAQKVIDAGATWVGPNPKALVDLGDKITARRVAT 101

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI +++ D  +    +  
Sbjct: 102 FAKVPPVPGISHSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVRNDDELRGFYMNH 161

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      D   + T  +           K         
Sbjct: 162 DALQGGDLNEYFVERFIDKGRHVETQCGRDTHGNFTVYSTRDCSVQRRNQKLVEEAPAPF 221

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP      + +++ R +    +A+G  G+   +F+      KV++LE+N +
Sbjct: 222 LPDT----VMEQLARYSRNLFEAVGYVGLGTCEFMVTEQ-GKVYFLEVNPR 267


>gi|306823637|ref|ZP_07457012.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Bifidobacterium dentium ATCC 27679]
 gi|304553344|gb|EFM41256.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Bifidobacterium dentium ATCC 27679]
          Length = 647

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 96  LIDILHRSGADAVHPG-YGFLSEVASFAQKVIDAGATWVGPNPKALVDLGDKITARRVAT 154

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI +++ D  +    +  
Sbjct: 155 FAKVPPVPGISHSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVRNDDELRGFYMNH 214

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      D   + T  +           K         
Sbjct: 215 DALQGGDLNEYFVERFIDKGRHVETQCGRDTHGNFTVYSTRDCSVQRRNQKLVEEAPAPF 274

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP      + +++ R +    +A+G  G+   +F+      KV++LE+N +
Sbjct: 275 LPDT----VMEQLARYSRNLFEAVGYVGLGTCEFMVTEQ-GKVYFLEVNPR 320


>gi|171741346|ref|ZP_02917153.1| hypothetical protein BIFDEN_00426 [Bifidobacterium dentium ATCC
           27678]
 gi|283455297|ref|YP_003359861.1| accC Acetyl-/propionyl-CoA carboxylase subunit alpha
           [Bifidobacterium dentium Bd1]
 gi|171276960|gb|EDT44621.1| hypothetical protein BIFDEN_00426 [Bifidobacterium dentium ATCC
           27678]
 gi|283101931|gb|ADB09037.1| accC Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           dentium Bd1]
          Length = 620

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 69  LIDILHRSGADAVHPG-YGFLSEVASFAQKVIDAGATWVGPNPKALVDLGDKITARRVAT 127

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI +++ D  +    +  
Sbjct: 128 FAKVPPVPGISHSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVRNDDELRGFYMNH 187

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      D   + T  +           K         
Sbjct: 188 DALQGGDLNEYFVERFIDKGRHVETQCGRDTHGNFTVYSTRDCSVQRRNQKLVEEAPAPF 247

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP      + +++ R +    +A+G  G+   +F+      KV++LE+N +
Sbjct: 248 LPDT----VMEQLARYSRNLFEAVGYVGLGTCEFMVTEQ-GKVYFLEVNPR 293


>gi|156938203|ref|YP_001435999.1| phosphoribosylglycinamide formyltransferase 2 [Ignicoccus
           hospitalis KIN4/I]
 gi|172044474|sp|A8ACE0|PURT_IGNH4 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|156567187|gb|ABU82592.1| phosphoribosylglycinamide formyltransferase 2 [Ignicoccus
           hospitalis KIN4/I]
          Length = 402

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 96/317 (30%), Gaps = 41/317 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----RS 41
           A+L+G  S E    L  GK     L+  G +V  +D                +D      
Sbjct: 16  ALLLG--SGE----L--GKEVVIELQRLGVEVVAVDRYDRAPAMHVAHRRYVIDMLDYDQ 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  V+   +PD+    +      D LV    E   +      +  +   ++  R      
Sbjct: 68  VVDVVRRERPDVIIPEVE-AINTDALVDLEKEGYFVVPNARAVKITMNRIELRRLAAEKV 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                            ++   +  P +IKP    S  G  +    +       ++    
Sbjct: 127 GVPTTRYAFAHNEDEAAEACEKVGYPCLIKPEMSSSGHGHTLASSPEEAREGFKRALKEA 186

Query: 162 HG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            G  ++ ++E++V+       +            VP         K          PA +
Sbjct: 187 RGKSERAIVEEFVEIDRELTALTYRHDTGNGIETVPLPPVEHKRPKGIYYYYESWHPATV 246

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PV 271
             ++ K+ + +A      +G  GI   + L      +V + E++ +P  T         +
Sbjct: 247 NDEVVKKAKDIAVKVVNELGGLGIFGVEILVT-KDGRVLFSEVSPRPHDTGLVTLASMEL 305

Query: 272 SIFPEMAAYA-GYSFRE 287
           S F   A    G    E
Sbjct: 306 SEFAIHARAVLGLPVPE 322


>gi|71892073|ref|YP_277803.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
 gi|71796179|gb|AAZ40930.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Blochmannia pennsylvanicus str. BPEN]
          Length = 451

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 83/285 (29%), Gaps = 40/285 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL---------------AHLKPDLAFNVLH-- 59
                 A ++ G +   +   +DR +  VL               ++L      +     
Sbjct: 14  ALRILRACKELGIQTVAVHSTIDRDLKHVLLADETVCIGPPPAIHSYLNIPAIISAAEIT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+      +E     +         L  +K+ +  ++   G+   P 
Sbjct: 74  GSSGIHPGYGFLSENADFAEQVERSGFVFIGPRSETIRLMGNKISAIAIMKESGIMTVPG 133

Query: 111 ILV---------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                                 I+ P +IK   GG   G+ V+KK+  +   +    +  
Sbjct: 134 WDYKLNKNINNKIYNFSCQNLHINYPIIIKSAHGGGGRGMCVVKKESDLQDAIRMIRAEA 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIP 220
                    Y +        +    L   +  +         ++          PA  I 
Sbjct: 194 KNTFNDDTIYAEQYLAHPRHIEIQVLSDGKGNIIYLTERDCSVQRKHQKIVEESPALGIS 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++K +          IG RG+   +FL+   + + F++E+N +
Sbjct: 254 SAMWKHIGESCVKICYKIGYRGVGTFEFLY--ENNEFFFIEMNTR 296


>gi|310796196|gb|EFQ31657.1| urea carboxylase [Glomerella graminicola M1.001]
          Length = 1823

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 20/184 (10%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+       S+             +      +V+        +
Sbjct: 766 RIQYPVMLKSTAGGGGIGLERCNDSASLVEAFDSVQRLAQANFGDAGVFVEHFIENARHI 825

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
               +      V  +      L+  +       P   +P D+   +++ A     A+  R
Sbjct: 826 EVQVIGDGCGNVTSAGERDCSLQRRNQKVIEESPATFVPPDVRSRMRQAAVDLASAVKYR 885

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
            +   +F++D  + + ++LE+N +              +       G    +L+  M+  
Sbjct: 886 NVGTVEFIYDVDTSEFYFLEVNTR----------LQVEHPVTESVTGL---DLVECMIRV 932

Query: 296 ASCL 299
           AS  
Sbjct: 933 ASGN 936


>gi|56696064|ref|YP_166418.1| pyruvate carboxylase [Ruegeria pomeroyi DSS-3]
 gi|56677801|gb|AAV94467.1| pyruvate carboxylase [Ruegeria pomeroyi DSS-3]
          Length = 1145

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  ++ +   +++            E Y++
Sbjct: 144 MDAIRKEAAEIGYPLMLKASWGGGGRGMRPIHSEKELAEKVMEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + +    +    L      +         ++  +       PA        +E+  L  
Sbjct: 204 KMIIRARHVEVQILGDKHGEIYHLWERDCSVQRRNQKVVERAPAPYLSQAQREELCDLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  S   +++E+N +
Sbjct: 264 RICAHVNYECAGTVEFLMDMDSGNFYFIEVNPR 296


>gi|18978086|ref|NP_579443.1| carbamoyl phosphate synthase large subunit [Pyrococcus furiosus DSM
           3638]
 gi|22095505|sp|Q8U085|CARB_PYRFU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18893879|gb|AAL81838.1| carbamoyl-phosphate synthase large chain (glutamine-hydrolysing)
           [Pyrococcus furiosus DSM 3638]
          Length = 1056

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       +  V+   KPD    
Sbjct: 27  SGSQALKALREEGIESVLVNPNVATIQTSYELADKVYLLPLKTEFIEKVIEKEKPDGILV 86

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G                    +++  T    +  AL  +K +         VP   +
Sbjct: 87  GFGGQTALSLGVSLYKKGILDKYNVKVLGTPIEGIERALDREKFQKTMKKVGLPVPPSDA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++        G  + +  +     ++++ + +   ++L+E+
Sbjct: 147 AKTPEEAIEIAESIGFPVIVRVSFNLGGRGSFIARSREEFEKYIIRAFAQSEIRKVLVEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G                 +AV   +       ++  +        +    Y+ ++  
Sbjct: 207 YLNGW-KEIEFEVVRDKAGNSVAVVCLENVDPMGVHTGESIVVGPSQTLTNREYQMLRDA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A     AI   G         P S + + +E N  P M+  S     +   GY    +  
Sbjct: 266 AIRVADAIELIGEGNVQLALSPNSEEYYVIETN--PRMSRSS--ALASKVTGYPLAYIAT 321

Query: 291 WM 292
            +
Sbjct: 322 KL 323



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 67/182 (36%), Gaps = 13/182 (7%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             S       +     I  P +++P    S   + V   ++ +   L +++S +    +L
Sbjct: 674 WISAESIDEAIKLAKKIEYPVIVRPSYVLSGTAMKVAWNEKELIDFLKEAASVSPEHPVL 733

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KE 226
           I +++ G E     + D    V                  S +ST V P +   +   K 
Sbjct: 734 ISKFIPGTEAEIDAVSDGKKVVGVTLEHIE-----GAGVHSGDSTMVTPWRTLSERNVKR 788

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  + +   + +  +G     F+ D    K + LE+N++   T  S+ P  +   G +  
Sbjct: 789 IWEITYELAKELEIKGPFNVQFVIDK---KPYVLELNLR---TSRSM-PFSSKSRGVNLM 841

Query: 287 EL 288
           EL
Sbjct: 842 EL 843


>gi|332296906|ref|YP_004438828.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
 gi|332180009|gb|AEE15697.1| Diaminopimelate epimerase [Treponema brennaborense DSM 12168]
          Length = 1430

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/289 (15%), Positives = 94/289 (32%), Gaps = 30/289 (10%)

Query: 21  ACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLH 59
            C  AL+  G++V+ +         D D              V  ++   +P        
Sbjct: 609 QCVWALKRLGYEVAIVNNNPETVSTDFDTADRLYFEPLTPEDVMNIIRTERPLGVVVAFG 668

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G            + + I  T +  +  A   ++        +   P   S+L     + 
Sbjct: 669 GQTAIKLTKFLHDQGITILGTSADSIDMAEDRERFDELLERLNIKRPKGFSVLTTEEAVS 728

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   ++ P +++P        +I+   +  I   +    + N  + +LI++Y+ GIEL  
Sbjct: 729 AAEKLTYPVLLRPSYVLGGQNMIIAFTEADIREYMAIILAQNIENPVLIDKYLMGIELEV 788

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +        S           I  +      R   LA   +G
Sbjct: 789 DAICDGEDILIPGIMEHIERTGIHSGDSIAVYPAWNLNDILTEKIINQSRELALA---LG 845

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    +L      +++ +E+N +   T     P ++   G    EL
Sbjct: 846 TKGLVNIQYLI--YDNELYIIEVNPRSSRT----IPYISKVTGVPMVEL 888



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNV 57
           G     AL++ G KV  ++                     +  ++  ++   KPD   + 
Sbjct: 30  GTQACKALKEQGLKVVLVNSNPATLMTDHTMADAIYIEPLIPETIKRIIEKEKPDSLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G    +Q      L    +    +       + D+   K  +   G P  PS  +
Sbjct: 90  LGGQTGLTLSMQLAKEGFLAEHGVQLLGARPDTIDKAEDRQLFKDTMQEIGEPCIPSKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  +D    I  P +++P       G  +   ++ +          +   Q+L+E+ 
Sbjct: 150 TDLQSALDFTDEIGYPVIVRPAFTLGGTGGGIAYSEEELREIAQNGLHRSPIHQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +F    +              +    Y+ ++  A
Sbjct: 210 ISGWKEIEFEVIRDGSGNVITVCSMENFDPVGVHTGDSIVIAPT-VTLADKEYQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G     F   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISALKIEGGCNCQFALKPDSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAL 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|289649916|ref|ZP_06481259.1| hypothetical protein Psyrpa2_19529 [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 365

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D + +E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMAEELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|289628117|ref|ZP_06461071.1| hypothetical protein PsyrpaN_23798 [Pseudomonas syringae pv.
           aesculi str. NCPPB3681]
 gi|330871268|gb|EGH05977.1| urea amidolyase-like protein [Pseudomonas syringae pv. aesculi str.
           0893_23]
          Length = 768

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 65/184 (35%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D + +E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMAEELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|256830974|ref|YP_003159702.1| carbamoyl-phosphate synthase, large subunit [Desulfomicrobium
           baculatum DSM 4028]
 gi|256580150|gb|ACU91286.1| carbamoyl-phosphate synthase, large subunit [Desulfomicrobium
           baculatum DSM 4028]
          Length = 1082

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D +             +V  ++   +P     
Sbjct: 29  SGTQALKALKEEGYEVILVNSNPATIMTDPNLADRTYIEPIEPETVARIIEKERPCALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G  G +  V      +LE   +    + + +   +  +   ++ + + G+ V  S  
Sbjct: 89  TLGGQTGLNTAVAVAENGVLEKYGVELIGASLPSIKKAESRQLFRKAMENIGLKVPKSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P +++P       G  V    + +     Q  + +   ++++E+
Sbjct: 149 ARTQDDVREWGEKLKFPIIVRPAYTLGGTGGGVAYNKEDLERIAQQGLAASLTSEVMLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  K     
Sbjct: 209 SLLGWKEYELEVVRDKKDNCVIICSIENLDPMGVHTGDSVTVAPAQTLTDDEYQKMRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P +  +  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAIMREIGVETGGSNVQFAHNPANGDMMIIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/253 (12%), Positives = 83/253 (32%), Gaps = 10/253 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   KP+       G    +  V  + E + I  T    +  A   ++ ++   
Sbjct: 628 EDVLAIIEQEKPEGVIVQFGGQTPLNLAVPLLREGVPILGTSPDSIDRAEDRERFQALLK 687

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   + +     +     I  P V++P        + ++  ++ +     +  +
Sbjct: 688 KLDLLQPNNGTSMSIEEAVIVAARIGYPVVVRPSYVLGGRAMDIVYDEKDLRTYFEKHVT 747

Query: 160 WNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                 +LI+++++  IE+    + D         +   +           ++  + P  
Sbjct: 748 VVPDHPILIDKFLENAIEIDVDAVSDGEDTYVAGIMEHIEEAGIHSG---DSACVLPPHT 804

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +     +E++R        +G  G+    F       +++ LE+N +   T     P ++
Sbjct: 805 LGKMWVQEIERQTKALASELGVVGLMNIQFAL--KDEQIYILEVNPRASRTS----PFVS 858

Query: 279 AYAGYSFRELLLW 291
              G    +L   
Sbjct: 859 KATGVPLAKLATR 871


>gi|67921325|ref|ZP_00514844.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
 gi|67857442|gb|EAM52682.1| D-alanine--D-alanine ligase [Crocosphaera watsonii WH 8501]
          Length = 340

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 63/272 (23%), Positives = 108/272 (39%), Gaps = 22/272 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
              +     DL    +          +A+ +LL+IPY  +     AL+  K ++K +V +
Sbjct: 75  IQWITEQNIDLVLPQM-FCLPGMTQYRALFDLLKIPYLGNKAELMALTAHKAKAKAIVRA 133

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
            GV V    L+      +   + PP VIKP    +SLGI +++        L ++  +  
Sbjct: 134 TGVKVPYGELLRNSDTPN---LRPPVVIKPANADNSLGITLVRTMDEYQAGLEKAFQYA- 189

Query: 163 GDQLLIEQYVDGIELTC----------------GVMGDASLDVTEIAVPKSDFYSYELKY 206
            + L+ E    G E+ C                  +   +  +           + EL Y
Sbjct: 190 DEVLVEEYIELGREVRCGTIVKDGELISLPLEEYAVNQENNPIRNYEDKLKRDDTGELTY 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           ++ +        I     + VQ +A   HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 AAKDKKKAWIVDIKDPATRRVQEIAKQCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
             +P S+   MA   G S  ELL  ++++A  
Sbjct: 309 SFSPKSVISMMAQAKGISLDELLEIVIKEAMI 340


>gi|297626336|ref|YP_003688099.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
 gi|296922101|emb|CBL56669.1| Carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Propionibacterium
           freudenreichii subsp. shermanii CIRM-BIA1]
          Length = 1113

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/304 (11%), Positives = 79/304 (25%), Gaps = 37/304 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAF- 55
           SG      L + G++V  ++ +                       V  V+A  KPD    
Sbjct: 29  SGTQACRVLREEGYRVILVNSNPATIMTDPEFADATYVEPITPEFVEKVIAAEKPDALLA 88

Query: 56  -----------NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                        LH N   +     ++                  + +   +   S   
Sbjct: 89  TLGGQTALNTAISLHENGVLEKYGVELIGANVDAIQRGENREKFKEIVENLGEFSGSRPE 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V            M +   +  P V++P      +G         +          +   
Sbjct: 149 VARSHICHSVDDVMAAAKDLGFPVVLRPSYTMGGVGSGFANDPDELLQMAQIGLDASPVT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   I     +F    +      +          +  
Sbjct: 209 EVLVEESILGWKEFELELMRDKSDNVVIVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +        G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RMRDVGIAIIRAVGVDTGGCNIQFAINPADGRMIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FREL 288
             ++
Sbjct: 325 IAKI 328


>gi|296454922|ref|YP_003662066.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Bifidobacterium longum subsp. longum JDM301]
 gi|296184354|gb|ADH01236.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Bifidobacterium longum subsp. longum JDM301]
          Length = 654

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 9/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILRKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   GD  L E +++        +   S   +             L+  +       PA
Sbjct: 188 DALQGGD--LKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPA 245

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 246 PFLSEEIVSTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|302878651|ref|YP_003847215.1| D-alanine--D-alanine ligase domain-containing protein [Gallionella
           capsiferriformans ES-2]
 gi|302581440|gb|ADL55451.1| D-alanine--D-alanine ligase domain protein [Gallionella
           capsiferriformans ES-2]
          Length = 331

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 98/280 (35%), Gaps = 14/280 (5%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGL--VQAILELLEIPYTHSG 83
           +   G +V   +    +    A    D+  ++  G    + +  V AI E   + +    
Sbjct: 50  INSLGLRVHTYNGPDDLAKNAALHSNDIVLSIYGGRASRNRMALVPAICETFGLRFIGPD 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
           +    ++ DK  +K++ S CG+      I+ +   +     +  P VIKPL  GSS+GI 
Sbjct: 110 VYGRIVAQDKEVTKRLASDCGIITPAWRIVRSVEDLRYISGLRLPVVIKPLMEGSSIGIA 169

Query: 143 VIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCGVM-------GDASLDVTEIA 193
              +   +   L  +          +LIE++V G E+    +          S  V E  
Sbjct: 170 QRNRVVDVADVLPLAKELLETFNQPVLIEEFVAGREVAYSKIQHAGAESWAFSEVVIEGN 229

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                 + ++     + +       I  +++   +          G  G  R D      
Sbjct: 230 DDYFTNHLFDADEKLIPTVGRTIRNIDHELHANDRAAIDTFLTMFGAYGYCRVDGRL--A 287

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                +LE+     + P   F       G+S+ E++  ++
Sbjct: 288 DGNFHFLELTPDAWIAPRGQFARGFTEKGWSYAEVIAAVL 327


>gi|126664729|ref|ZP_01735713.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter sp. ELB17]
 gi|126631055|gb|EBA01669.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter sp. ELB17]
          Length = 446

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G K   +   VDR +  V LA            D   N+          
Sbjct: 14  ALRILRACKELGIKTVAVHSQVDRDLMHVRLADETVCIGPNSPTDSYLNIPAIISAAEVT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ +   + S GVP  P 
Sbjct: 74  DSVGIHPGYGFLAENADFAEQVEKSGFRFIGPRAETIRLMGNKVSAINAMISAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +  T+     I  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 SNGALTEDDDLTLKVAKKIGYPVIIKAASGGGGRGMQVVHSEAALLKAVQITQTEARSAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L                 +          PA  I  +  
Sbjct: 194 GDPTVYLEKFLERPRHVEVQVLADMHGNCIHLGDRDCSFQRRHQKVLEEAPAPGIDPEAR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  +    A + IG  G    +FL+       +++E+N +
Sbjct: 254 EKTLKACVDACKEIGYVGAGTFEFLY--QDGGFYFIEMNTR 292


>gi|153009604|ref|YP_001370819.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561492|gb|ABS14990.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum anthropi
           ATCC 49188]
          Length = 459

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 86/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 21  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 80

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE   I +         +  DK+ +K+     G+PV P 
Sbjct: 81  GADAIHPGYGFLSENAKFAEILEAHGITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +  +         I  P +IK   GG   G+ V + ++ + + L  + +     + 
Sbjct: 141 SDGGVTDDVEAARIAKEIGYPVIIKASAGGGGRGMKVARTEEDLSVALATARTEAGAAFG 200

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 201 DDAVYIEKYLEKPRHIEVQVMGDGAGNAIHLGERDCSLQ----RRHQKVWEEANSPALNA 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 257 EARDKIGMVCANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 298


>gi|308179622|ref|YP_003923750.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|308045113|gb|ADN97656.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 1020

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 91/293 (31%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+    ++ +                       +  ++A  +P        G
Sbjct: 575 CVKAIQQAGYHAIIVNNNPETVSTDFSTSDKLYFEPLTIERLMPIIALEQPAGVIVQFGG 634

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q     + +  T                   +         ++        +
Sbjct: 635 QTAINLAYQLTKLGVTVLGTSVSATDLTEDRQSFADCLRLLKIAQAAGTTVTELSGARQA 694

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +++P        + ++  D  +   +  + +  HG  +L++QY+ G E    
Sbjct: 695 AHAIGYPLLVRPSFVLGGRAMAIVHNDHELTPVIKSAVAAGHGAPILMDQYLAGTECEVD 754

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D +       +   +       +S  + T   P  +   +  ++  +A    Q + C
Sbjct: 755 VLSDGTSCFIPGIMEHIEGAG---VHSGDSITVYPPQHLSPAVQDKIVTIATKLAQHLHC 811

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +++N +   T     P M+        +L   ++
Sbjct: 812 VGMMNIQFVVT---DDVYVIDVNPRASRT----VPYMSKVTHLPLAQLATRLI 857



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 92/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L+ AG+ V  I+ +                      SV  +L    PD     
Sbjct: 30  GTQACLSLKAAGYHVILINSNPATIMTDTATADEVYLEPLTLTSVTKILRAAHPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          D         +++  T    +  A      ++        +P   ++
Sbjct: 90  LGGQTGLNLAMALDQAGVLNELKIQLLGTSLATINQAEDRAAFKTLMKRLHQPIPASTTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +      +   L +  + +   + LIEQ 
Sbjct: 150 HHVTSALSFAEKIGYPVIVRPAFTLGGSGGGIANNAAELTQTLQRGLTMSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G               T+I V   + +     ++  +  +     +    Y++++  A
Sbjct: 210 IAG-FKEIEFEVMRDNQGTKIIVCSMENFDPVGIHTGDSIVYAPVQTLTDTEYQQLRTAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
               +A+  RG        DP SR+ + +E+N  P ++  S     +   GY 
Sbjct: 269 LTIVEALDIRGGCNVQLAQDPNSRQYYVIEVN--PRVSRSS--ALASKATGYP 317


>gi|262376502|ref|ZP_06069731.1| urea carboxylase [Acinetobacter lwoffii SH145]
 gi|262308641|gb|EEY89775.1| urea carboxylase [Acinetobacter lwoffii SH145]
          Length = 1201

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 84/308 (27%), Gaps = 47/308 (15%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
               L+  G +   +  +     +   L  +  F                          
Sbjct: 17  VIRTLKKLGIQSVAVYSEADRDSLHVTLADEAVFIGDAPASQSYLNVDKILEVAKHTGAQ 76

Query: 57  VLHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G          L E             + A  L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCNLCEAQGIVFLGPNAEQMKAFGLKHTARELAIQANVPLLPGSQL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P ++K   GG  +G+ ++   + +       S     +      
Sbjct: 137 LADEAEALLEAERIGYPVMLKSTAGGGGIGMRLVWNAEELKEAYATVSYLAQANFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQR 229
           Y++        +           V         ++  +       PA    D  +  +Q 
Sbjct: 197 YLEKFVQNARHIEVQIFGDGNGLVLALGERDCSVQRRNQKVIEETPAPHLNDTQRAYIQN 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTDTQEFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMV 293
            +L+ WMV
Sbjct: 307 -DLVEWMV 313


>gi|290509481|ref|ZP_06548852.1| urea carboxylase [Klebsiella sp. 1_1_55]
 gi|289778875|gb|EFD86872.1| urea carboxylase [Klebsiella sp. 1_1_55]
          Length = 1201

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++K   GG  +G+ V +  + +             +      +++    
Sbjct: 144 CQAAEAVGYPVMLKSTAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGVFLEKYIE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        E  V         L+  +       PA    D + + +   A    +
Sbjct: 204 RARHLEVQIFGDGEGEVIALGVRDCSLQRRNQKVIEETPAPNLPDGMAQALCSAAIALGK 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D  +++ ++LE+N +     G+T      ++    G    +L+ WM
Sbjct: 264 AVNYRSAGTVEFVYDSAAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWM 312

Query: 293 VEDASCL 299
           +  A+  
Sbjct: 313 IALAAGD 319


>gi|332710439|ref|ZP_08430386.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
 gi|332350770|gb|EGJ30363.1| carbamoyl-phosphate synthase large subunit [Lyngbya majuscula 3L]
          Length = 1085

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA------------FN 56
           SG     AL + G++V  +         D + +    +  L P++               
Sbjct: 29  SGTQACKALREEGYEVVLVNSNPASIMTDPETADRTYIEPLTPEIVEKVIEKEQPCALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +LE   +    + + A   + D++  K+ +   GV VCPS +
Sbjct: 89  TMGGQTALNIAVDLAKNGVLEKHGVELIGAKLEAIEKAEDRLLFKEAMERIGVGVCPSGI 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            N               P +I+P       G  +    +            +   Q+L+E
Sbjct: 149 ANNLKEAKAIAQKIGSYPLIIRPAFTLGGSGGGIAYNKEEYETMAQGGLDASPVSQILVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 QSLLGWKEYELEVMRDLADNVVIICSIENVDPMGIHTGDSITVAPAQTLTDKEYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P++ +V  +E+N  P ++  S     +   G+   +  
Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPINGQVIVIEMN--PRVSRSS--ALASKATGFPIAKFA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.5 bits (90), Expect = 0.59,   Method: Composition-based stats.
 Identities = 22/171 (12%), Positives = 56/171 (32%), Gaps = 7/171 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              IS P V++P        + ++  D+ +   +  +        +LI+++++   +   
Sbjct: 716 AKRISYPVVVRPSYVLGGRAMEIVYSDEDLKRYMKFAVQVEPEHPILIDKFLEN-AVEVD 774

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A      +     +       +S  ++  +    +     + ++   +   +A+  
Sbjct: 775 VDAIADHTGRVVIGGIMEHIEQAGIHSGDSACSLPHTSLTPVALETMRTWTYQLAKALKV 834

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G+    F        V+ LE N +   T     P ++   G     L   
Sbjct: 835 VGLMNIQFAV--QGETVYILEANPRASRT----IPYVSKATGVPLAGLASR 879


>gi|325576959|ref|ZP_08147530.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160917|gb|EGC73036.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 393

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 82/299 (27%), Gaps = 36/299 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALKALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATDTLIELEKAGFNVVPTAKATKLTMNREGIRRLAAEELGLPT-SPYQFVDNFADFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  ++K    +        +   G        V+G    
Sbjct: 143 SAVEKIGIPCVVKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 +          P  +     K+ Q +A     A+
Sbjct: 201 DYEITLLTVRHING--TSFLAPIGHRQEDGDYRESWQPQAMSDAALKKAQDVAEKITTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFREL 288
           G RGI   +        +V + E++ +P   GM       +S F   A    G    E+
Sbjct: 259 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI 315


>gi|158299300|ref|XP_319416.4| AGAP010228-PA [Anopheles gambiae str. PEST]
 gi|157014298|gb|EAA14349.4| AGAP010228-PA [Anopheles gambiae str. PEST]
          Length = 696

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 84/257 (32%), Gaps = 25/257 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + +  ++ +      A      K  SK ++S+ GVP+      
Sbjct: 104 AIHPGYGFLSENVEFAELCQQEQVTFIGPPASAIRDMGIKSTSKHIMSAAGVPIINGYHG 163

Query: 114 NRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    M     I  P +IK ++GG   G+ + + +      L  + + +        
Sbjct: 164 EDQSDEKLMQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFMPMLQSARTESEKAFGDSA 223

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
             ++    +   +                     ++          PA     ++ K++ 
Sbjct: 224 MLLERYVRSPRHVEVQVFADHYGNAVYLYERDCSVQRRHQKIIEEAPAPGLSEELRKQLG 283

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A +A+   G    +F+ D       ++E+N       P +T +            
Sbjct: 284 EAAVRAAKAVNYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------I 331

Query: 284 SFRELLLWMVEDASCLR 300
           +  +L+ W ++ A+  R
Sbjct: 332 TGTDLVEWQIKVAAGER 348


>gi|113867270|ref|YP_725759.1| pyruvate carboxylase [Ralstonia eutropha H16]
 gi|113526046|emb|CAJ92391.1| pyruvate carboxylase [Ralstonia eutropha H16]
          Length = 1167

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    K D      +G   E+      +    I +            +K+ 
Sbjct: 66  LDID-DILRIARQAKVDAIHPG-YGFLSENPDFAQAVIDAGIRWIGPSPEVMRKLGNKVA 123

Query: 96  SKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           ++      GVPV P+                 I  P ++K   GG   G+ V++++Q + 
Sbjct: 124 ARNAAIDAGVPVMPATDPLPHDLDTCKRLAAGIGYPLMLKASWGGGGRGMRVLEREQDLE 183

Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                      +++ + +  + +   +   +   V+GD   ++  +            K 
Sbjct: 184 GALAAARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGNLVHLYERDCTVQRRNQKV 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L       + +     A    +A+G       +FL D  S + +++E+N +
Sbjct: 244 VERAPAPYLDDAGRAALCE----SALRLMRAVGYTHAGTVEFLMDADSGQFYFIEVNPR 298


>gi|328881131|emb|CCA54370.1| Carbamoyl-phosphate synthase large chain [Streptomyces venezuelae
           ATCC 10712]
          Length = 1102

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 89/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRILKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       Q +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHEQGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKAKIGYGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLKGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAINPDDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAARL 332


>gi|294791709|ref|ZP_06756857.1| pyruvate carboxylase [Veillonella sp. 6_1_27]
 gi|294456939|gb|EFG25301.1| pyruvate carboxylase [Veillonella sp. 6_1_27]
          Length = 1148

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    I    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +P+ P     +       +       P +IK + GG   G+  +   + + 
Sbjct: 122 AREQAKLAKIPMIPGSDGALKDYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            + 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       + L+  K V   A    + +G       +FL        +++E+N +
Sbjct: 238 HQKVVEMAPAFALSLETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295


>gi|294793573|ref|ZP_06758710.1| pyruvate carboxylase [Veillonella sp. 3_1_44]
 gi|294455143|gb|EFG23515.1| pyruvate carboxylase [Veillonella sp. 3_1_44]
          Length = 1148

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    I    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +P+ P     +       +       P +IK + GG   G+  +   + + 
Sbjct: 122 AREQAKLAKIPMIPGSDGALKDYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            + 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       + L+  K V   A    + +G       +FL        +++E+N +
Sbjct: 238 HQKVVEMAPAFALSLETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295


>gi|282848798|ref|ZP_06258191.1| pyruvate carboxylase [Veillonella parvula ATCC 17745]
 gi|282581452|gb|EFB86842.1| pyruvate carboxylase [Veillonella parvula ATCC 17745]
          Length = 1148

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    I    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +P+ P     +       +       P +IK + GG   G+  +   + + 
Sbjct: 122 AREQAKLAKIPMIPGSDGALKDYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            + 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       + L+  K V   A    + +G       +FL        +++E+N +
Sbjct: 238 HQKVVEMAPAFALSLETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295


>gi|269797813|ref|YP_003311713.1| pyruvate carboxylase [Veillonella parvula DSM 2008]
 gi|269094442|gb|ACZ24433.1| pyruvate carboxylase [Veillonella parvula DSM 2008]
          Length = 1148

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 76/239 (31%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    I    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +P+ P     +       +       P +IK + GG   G+  +   + + 
Sbjct: 122 AREQAKLAKIPMIPGSDGALKDYAQLEEFADTHGFPLMIKAVNGGGGRGMREVHHKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            + 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       + L+  K V   A    + +G       +FL        +++E+N +
Sbjct: 238 HQKVVEMAPAFALSLETRKAVCDAAVKIMKNVGYVNAGTVEFLVTA-DGSFYFIEVNPR 295


>gi|307301143|ref|ZP_07580912.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           BL225C]
 gi|307317876|ref|ZP_07597314.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           AK83]
 gi|306896638|gb|EFN27386.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           AK83]
 gi|306904098|gb|EFN34684.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium meliloti
           BL225C]
          Length = 447

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 88/257 (34%), Gaps = 28/257 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     ++    I  P +IK   GG   G+ V + ++ +   +  + S      G+ 
Sbjct: 135 DGEVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELENAVATARSEAAAAFGND 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      +      +    A+   +      +             + ++   
Sbjct: 195 AVYMEKFLGKPRHIEIQVVGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
           ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A 
Sbjct: 253 KIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------AI 301

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+   +  AS
Sbjct: 302 TGI---DLVHEQIRVAS 315


>gi|330950084|gb|EGH50344.1| Urea amidolyase-related protein [Pseudomonas syringae Cit 7]
          Length = 807

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCA----AAVKLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 RAVNYRSAGTVEFVFDSDDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 312 MVQLAAGD 319


>gi|307637608|gb|ADN80058.1| Carbamoyl-phosphate synthase large chain [Helicobacter pylori 908]
 gi|325996203|gb|ADZ51608.1| Carbamoyl-phosphate synthase large chain [Helicobacter pylori 2018]
 gi|325997797|gb|ADZ50005.1| hypothetical protein hp2017_0902 [Helicobacter pylori 2017]
          Length = 1085

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 34/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIATIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAISEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 89/267 (33%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++   + D    ++H        +   L  ++ P   +    
Sbjct: 613 DALYFEPIHFECVKS---IIQRERVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELRHYLESVTHSLEISPKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLSPEILDEIERVSAKIALHLGVVGLLNIQFAV--YQNSLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|23501792|ref|NP_697919.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           1330]
 gi|62289849|ref|YP_221642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82699775|ref|YP_414349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis biovar Abortus 2308]
 gi|148560130|ref|YP_001258883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ovis
           ATCC 25840]
 gi|161618864|ref|YP_001592751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella canis
           ATCC 23365]
 gi|189024091|ref|YP_001934859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           S19]
 gi|254693638|ref|ZP_05155466.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|254697290|ref|ZP_05159118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|254701670|ref|ZP_05163498.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|254704213|ref|ZP_05166041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|254719009|ref|ZP_05180820.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|254730188|ref|ZP_05188766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|256061011|ref|ZP_05451168.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|256257405|ref|ZP_05462941.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|256369334|ref|YP_003106842.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260545404|ref|ZP_05821145.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260566539|ref|ZP_05837009.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260757877|ref|ZP_05870225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260761700|ref|ZP_05874043.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260883680|ref|ZP_05895294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|261213904|ref|ZP_05928185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261325011|ref|ZP_05964208.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261752222|ref|ZP_05995931.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261754881|ref|ZP_05998590.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|265983999|ref|ZP_06096734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297248254|ref|ZP_06931972.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306840104|ref|ZP_07472890.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
 gi|306843804|ref|ZP_07476402.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|23347723|gb|AAN29834.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis 1330]
 gi|62195981|gb|AAX74281.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus
           bv. 1 str. 9-941]
 gi|82615876|emb|CAJ10880.1| Acetyl-CoA carboxylase, biotin carboxylase:Carbamoyl-phosphate
           synthase L chain, ATP-binding:Carbamoyl-phosphate
           synthetase l [Brucella melitensis biovar Abortus 2308]
 gi|148371387|gb|ABQ61366.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ovis ATCC
           25840]
 gi|161335675|gb|ABX61980.1| Acetyl-CoA carboxylase [Brucella canis ATCC 23365]
 gi|189019663|gb|ACD72385.1| acetyl-CoA carboxylase [Brucella abortus S19]
 gi|255999494|gb|ACU47893.1| acetyl-CoA carboxylase [Brucella microti CCM 4915]
 gi|260096811|gb|EEW80686.1| acetyl-CoA carboxylase [Brucella abortus NCTC 8038]
 gi|260156057|gb|EEW91137.1| acetyl-CoA carboxylase [Brucella suis bv. 4 str. 40]
 gi|260668195|gb|EEX55135.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 4 str. 292]
 gi|260672132|gb|EEX58953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 2 str. 86/8/59]
 gi|260873208|gb|EEX80277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 9 str. C68]
 gi|260915511|gb|EEX82372.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 3 str. Tulya]
 gi|261300991|gb|EEY04488.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           neotomae 5K33]
 gi|261741975|gb|EEY29901.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 5 str. 513]
 gi|261744634|gb|EEY32560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           bv. 3 str. 686]
 gi|264662591|gb|EEZ32852.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           83/13]
 gi|297175423|gb|EFH34770.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella abortus bv. 5
           str. B3196]
 gi|306275882|gb|EFM57598.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO1]
 gi|306404832|gb|EFM61125.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. NF 2653]
          Length = 452

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P 
Sbjct: 74  GADAIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V +  + +P+ L  + S     + 
Sbjct: 134 SDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 194 DDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNA 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 250 EAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|327480620|gb|AEA83930.1| biotin carboxylation domain-containing protein [Pseudomonas
           stutzeri DSM 4166]
          Length = 1199

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 67/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
              +  P ++K   GG  +G+ V +    +             +      +++       
Sbjct: 147 AEQVGYPVMLKSTAGGGGIGMRVCRSAAELTDAFDAVKRLGQNNFSDSGVFIEKYIERAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD + +V  + V          K         LP  +   + +     A    
Sbjct: 207 HLEVQVFGDGAGEVIALGVRDCSVQRRNQKVLEETPAPNLPTGMAEALCE----AAITLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F++D  +++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 KAVSYRSAGTVEFVYDAEAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRW 311

Query: 292 MVEDASCL 299
           M+E A+  
Sbjct: 312 MIELAAGD 319


>gi|225627395|ref|ZP_03785432.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
 gi|225617400|gb|EEH14445.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella ceti str.
           Cudo]
          Length = 459

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 87/284 (30%), Gaps = 43/284 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---VLAHLKP--------DLAFN----------- 56
                 A ++ G K   +            LA            D   N           
Sbjct: 21  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPSRDSYLNIHQIVAACEIT 80

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P 
Sbjct: 81  GADAIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPG 140

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V +  + +P+ L  + S     + 
Sbjct: 141 SDGGVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFG 200

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   VMGD + +   +            +             +  
Sbjct: 201 DDAVYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNA 256

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 257 EAREKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 298


>gi|5457424|emb|CAB48407.1| urea amidolyase homologue [Pseudomonas fluorescens]
          Length = 1213

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GIEL 177
            +  P ++K   GG  +G+ V +    +             +      +++        L
Sbjct: 149 QLGYPVMLKSTAGGGGIGMRVCRSATDLSESFEAVKRLGQNNFSDAGVFIEKYIERARHL 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD    V  + V          K         LP  +  ++       A    QA
Sbjct: 209 EVQVFGDGQGQVIALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCA----AAIQLAQA 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  R     +F+FD  + + ++LE+N +     G+T      ++    G    +L+ WMV
Sbjct: 265 VNYRSAGTVEFVFDSDAGRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMV 313

Query: 294 EDASCL 299
           + A+  
Sbjct: 314 QLAAGD 319


>gi|66047204|ref|YP_237045.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           B728a]
 gi|63257911|gb|AAY39007.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           B728a]
          Length = 1488

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 65/188 (34%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
              I  P ++K   GG  +G+ V +    +             +      +++       
Sbjct: 147 ARTIGYPVMLKSTAGGGGIGMRVCRSAGELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCA----AAVKLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 312 MVQLAAGD 319


>gi|321311471|ref|YP_004203758.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
 gi|320017745|gb|ADV92731.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis BSn5]
          Length = 444

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++K   GG  +G+  ++ ++++      +             Y++ +  
Sbjct: 145 CRTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGSMYIEKVIE 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
               +    L                ++          P   +  ++  ++ + A  A +
Sbjct: 205 HARHIEVQLLADQHGHTVHLFERDCSVQRRHQKVIEEAPSPFVDDELRMKIGQTAVKAAK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AIG       +F+ D      ++LE+N +
Sbjct: 265 AIGYTNAGTIEFIVDQKQN-FYFLEMNTR 292


>gi|16078885|ref|NP_389706.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221309715|ref|ZP_03591562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. 168]
 gi|221314037|ref|ZP_03595842.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. NCIB 3610]
 gi|221318959|ref|ZP_03600253.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. JH642]
 gi|221323233|ref|ZP_03604527.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. subtilis str. SMY]
 gi|81555986|sp|O34544|ACCC2_BACSU RecName: Full=Biotin carboxylase 2; AltName: Full=Acetyl-CoA
           carboxylase subunit A 2; Short=ACC 2
 gi|2266425|emb|CAA74216.1| yngH [Bacillus subtilis subsp. subtilis str. 168]
 gi|2634207|emb|CAB13707.1| biotin carboxylase subunit [Bacillus subtilis subsp. subtilis str.
           168]
          Length = 444

 Score = 56.8 bits (135), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/149 (12%), Positives = 50/149 (33%), Gaps = 2/149 (1%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++K   GG  +G+  ++ ++++      +             Y++ +  
Sbjct: 145 CRTASQIGYPVMLKASAGGGGIGMQRVENEEALKKAYEGNKKRAADFFGDGSMYIEKVIE 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
               +    L                ++          P   +  ++  ++ + A  A +
Sbjct: 205 HARHIEVQLLADQHGHTVHLFERDCSVQRRHQKVIEEAPSPFVDDELRMKIGQTAVKAAK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AIG       +F+ D      ++LE+N +
Sbjct: 265 AIGYTNAGTIEFIVDQKQN-FYFLEMNTR 292


>gi|295399981|ref|ZP_06809961.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294977760|gb|EFG53358.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ ++ +      +             Y++       
Sbjct: 148 AEHIGYPVMLKASAGGGGIGMQIVRNEEELRKAFEGNQKRAASFFGDGAMYLEKYIANPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A + IG
Sbjct: 208 HIEIQLLADEYGNCIYLWERECSIQRRHQKVVEEAPSPFLDEKTRRKIGETAVKAAKHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTMEFLVDEQKN-FYFLEMNTR 292


>gi|198277213|ref|ZP_03209744.1| hypothetical protein BACPLE_03424 [Bacteroides plebeius DSM 17135]
 gi|198269711|gb|EDY93981.1| hypothetical protein BACPLE_03424 [Bacteroides plebeius DSM 17135]
          Length = 1075

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADKIYFLPVTPYFVEKVIDKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       + E        + + A   + D+    Q +    V    S  
Sbjct: 87  SFGGQTALNCGVALYKAGVFEKYNTRVLGTPVQAIMDTEDRELFVQKLDEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENIEDARRAAKELGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|195970180|ref|NP_385425.3| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           meliloti 1021]
 gi|15074251|emb|CAC45898.1| Probable biotin carboxylase [Sinorhizobium meliloti 1021]
          Length = 449

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/257 (15%), Positives = 88/257 (34%), Gaps = 28/257 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         L  DK+ +K+     G+PV P  
Sbjct: 78  DAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGS 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     ++    I  P +IK   GG   G+ V + ++ +   +  + S      G+ 
Sbjct: 137 DGEVRPENALEIARQIGFPVLIKATAGGGGRGMKVARTEEELENAVATARSEAAAAFGND 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      +      +    A+   +      +             + ++   
Sbjct: 197 AVYMEKFLGKPRHIEIQVVGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQRM 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
           ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A 
Sbjct: 255 KIGQVCADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------AI 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+   +  AS
Sbjct: 304 TGI---DLVHEQIRVAS 317


>gi|326408927|gb|ADZ65992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           melitensis M28]
 gi|326538643|gb|ADZ86858.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella melitensis
           M5-90]
          Length = 413

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 38  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 97

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 98  GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 157

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 158 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 213

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 214 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 252


>gi|291459951|ref|ZP_06599341.1| carbamoyl-phosphate synthase, large subunit [Oribacterium sp. oral
           taxon 078 str. F0262]
 gi|291417292|gb|EFE91011.1| carbamoyl-phosphate synthase, large subunit [Oribacterium sp. oral
           taxon 078 str. F0262]
          Length = 1067

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 35/254 (13%), Positives = 78/254 (30%), Gaps = 9/254 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  ++   KPD A     G              + I  T    +  A   +       
Sbjct: 620 EDLRNIVELEKPDAAVVQFGGQTAISLTGALREMGVSILGTSPEDVDRAEDRELFDEILE 679

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            +    P   S+        +   +  P +++P       G+ +   D  +   +L    
Sbjct: 680 KNGIRRPEGRSVRTMEEAKHAASELGYPVLVRPSYVLGGQGMRIAISDSDLEEYILAIDE 739

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                 +LI++YV G EL    + D S  +    +   +           + +   P  +
Sbjct: 740 SAKEHPILIDKYVRGKELEVDAVYDGSEILIPGIMEHIERSGIHSG---DSISVYPPRGL 796

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
                K +        +A+  RG+    F+      +++ +E+N +   T     P ++ 
Sbjct: 797 RPLARKRLLEATEKLARALCVRGLINIQFI--AREDEIYVIEVNPRSSRT----VPYLSK 850

Query: 280 YAGYSFRELLLWMV 293
             G     +   ++
Sbjct: 851 VTGIPIVSIAARIL 864



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 86/301 (28%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQ-----------------IDV----DRSVGLVLAHLKPDLAFNV 57
           G     +L + G +V                   + +       V  ++   +PD     
Sbjct: 29  GTQACRSLREEGVEVVLLNSNPATIMTDREIADHVYIEPLCTEVVEKLIERERPDSILPT 88

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +          LE   +    +  L    + D+   +         V     +
Sbjct: 89  LGGQAGLNLAVALSESGFLESHSVRLIGTTELTIRKAEDRLLFKETMERIGEPVAPSRIV 148

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 + +   I  P V++P       G  + ++ +     L      +   ++L+EQ 
Sbjct: 149 RSVSEGLLAAEEIGYPVVLRPAYTLGGSGGGIAQEREQCREILENGLRLSRVHEVLVEQS 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +     +                 + Y+ ++  A
Sbjct: 209 IAGWKEIEYELMRDSAGNAVSICNMENLDPVGVHTGDSIVCAPSQTLSDRE-YQLLRSSA 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     F  DP S + F +E+N  P ++  S     +   GY    +   
Sbjct: 268 LRIVTELGITGGCNVQFALDPESFRYFVIEVN--PRVSRSS--ALASKATGYPIARVSAK 323

Query: 292 M 292
           +
Sbjct: 324 L 324


>gi|254706885|ref|ZP_05168713.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|254710007|ref|ZP_05171818.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|254716933|ref|ZP_05178744.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|256031502|ref|ZP_05445116.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260168635|ref|ZP_05755446.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella sp.
           F5/99]
 gi|261218739|ref|ZP_05933020.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261314350|ref|ZP_05953547.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261317555|ref|ZP_05956752.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261758108|ref|ZP_06001817.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|265988589|ref|ZP_06101146.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
 gi|260923828|gb|EEX90396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M13/05/1]
 gi|261296778|gb|EEY00275.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis B2/94]
 gi|261303376|gb|EEY06873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M163/99/10]
 gi|261738092|gb|EEY26088.1| acetyl-CoA carboxylase [Brucella sp. F5/99]
 gi|264660786|gb|EEZ31047.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella
           pinnipedialis M292/94/1]
          Length = 452

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 253 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|163843176|ref|YP_001627580.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella suis
           ATCC 23445]
 gi|163673899|gb|ABY38010.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella suis ATCC
           23445]
          Length = 452

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 253 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|168334931|ref|ZP_02693050.1| biotin carboxylase [Epulopiscium sp. 'N.t. morphotype B']
          Length = 451

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++  ++ +    L +S+   G       Y++       
Sbjct: 148 AKEIGYPVMLKASAGGGGRGMRIVFVEKDLESAFLSASTEALGAFGDGSMYMERYVQNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      +         ++          P+       +      A  A +A+ 
Sbjct: 208 HIEFQILGDNYGNIVHLGERDCSMQRRHQKVMEEAPSPFISKEMRVTMGDAAIKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +F+ D      +++E+N +
Sbjct: 268 YRNAGTVEFIVD-KDGNFYFIEMNTR 292


>gi|71410983|ref|XP_807760.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
 gi|70871830|gb|EAN85909.1| hypothetical protein, conserved [Trypanosoma cruzi]
          Length = 513

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 17/249 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++     D+ +N   G   ED     V   LE  ++P+T +      LS  +M+ 
Sbjct: 59  RQIRQLVKSGAFDVFYNQCDGAIDEDKAGVEVVQALESFKVPFTGAISKYYELSKPEMKR 118

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLL 155
                +        +       +    +  P ++K + G SS+G+    K   +      
Sbjct: 119 MAHYCAVKTAPYAVLEAGDNVRELCAALHFPLIVKHISGYSSVGMDKSCKVYDMDALKER 178

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSS 208
            +   +     L+E+++ G E T  V  D              +  P+ + + +      
Sbjct: 179 VARFIDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWE 238

Query: 209 LNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                +       D  +   +          +G  G  R D   D     V +LEIN   
Sbjct: 239 TYEGMIWRLVSEDDPALPDIIHIARTAFLHMMGGVGYGRVDVRIDREKNTVVFLEINPNC 298

Query: 267 GMTPVSIFP 275
           G+    ++P
Sbjct: 299 GI----MYP 303


>gi|301155250|emb|CBW14715.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus
           parainfluenzae T3T1]
          Length = 393

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/299 (13%), Positives = 83/299 (27%), Gaps = 36/299 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGVALKALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +          +       
Sbjct: 84  EAIATDTLVELEQVGFNVVPTAKATKLTMNREGIRRLAAEELKLPT-SPYQFVDNFADFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  ++K    +        +   G        V+G    
Sbjct: 143 SAVEKIGIPCVVKPIMSSSGHGQSILKSKDDLQKA--WDYAQQGGRAGAGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 +          P  +     K+ Q +A     A+
Sbjct: 201 DYEITLLTVRHING--TSFLAPIGHRQEDGDYRESWQPQAMSDVALKKAQDVAEKITTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFREL 288
           G RGI   +        +V + E++ +P   GM       +S F   A    G    E+
Sbjct: 259 GGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPEI 315


>gi|293400953|ref|ZP_06645098.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
 gi|291305979|gb|EFE47223.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 5_2_54FAA]
          Length = 1070

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  I+ +                          ++   +PD     
Sbjct: 30  GSQACQSLKEEGYEVILINSNPATIMTDTAIADRVYMEPLTVEFASRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110
           L G  G +  V  +     +      IL + L+           R         VP    
Sbjct: 90  LGGQTGLNL-VVELANSGILDAYGVEILGTDLTAINQAEDRELFRELMYEIKEPVPESAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P V++P       G   +  ++ + +        +   Q LIE+
Sbjct: 149 VHTVEEALAFAQTIGYPLVVRPAYTLGGTGGGFVDTEEELRIITENGLKLSPVQQCLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +          +      + ++ ++  
Sbjct: 209 SIAGFKEIEYEVMRDAHDNAIVVCNMENIDPVGIHTGDSMVVAPVQTLSDRE-HQMLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIRALKICGGCNVQLALDPASFKYYIIEVN--PRVSRSS--ALASKATGYPIAKIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 91/281 (32%), Gaps = 35/281 (12%)

Query: 26  LEDAGFKVSQID-------VDRSVGLVLAHLKPDLAFNVLH-------------GNFGED 65
           L + G++   I+        D S+   L + +P    +V+H                   
Sbjct: 581 LRECGYEAIVINNNPETVSTDFSISDKL-YFEPLTIEDVMHVVDLEQPLGVIVQFGGQTA 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHL 123
             +   L    +    + +     + D+   ++++    +P             +   + 
Sbjct: 640 INLADQLVKRGVKILGTSLENIDRAEDRHAFEEMLHKLDIPQPTGETAVTVEEALVIANK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTCGVM 182
           I  P +++P        + ++  D  + + +       +H   +L+++Y+ G E+    +
Sbjct: 700 IGYPVLVRPSYVLGGRAMEIVHNDADLKVYMATAVKEISHDAPILVDKYIVGKEMEIDAI 759

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
            D          P    +       S +S  V P   +   +   +   A    +     
Sbjct: 760 CDGEQVYI----PGIMEHIERAGIHSGDSISVYPAQTVSQKVKDTIVDYAIRIGKGFHFI 815

Query: 242 GISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           G+    F+ D    +V+ LE+N       P ++ ++  P  
Sbjct: 816 GLYNIQFIIDKAE-QVYVLEVNPRSSRTVPFLSKITGVPMS 855


>gi|114564233|ref|YP_751747.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           frigidimarina NCIMB 400]
 gi|122298936|sp|Q07YK6|PURT_SHEFN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|114335526|gb|ABI72908.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           frigidimarina NCIMB 400]
          Length = 396

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 86/269 (31%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  V+   KPDL    +
Sbjct: 27  GKEVAIELQRYGIEVIGVDRYPNAPAMQIAHRFHVINMLDAKALKAVIELEKPDLVIPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + ++                 
Sbjct: 87  EAIATQTLVELEQQGLHVVPTANAAKLTMDREGIRRLAAETLAIPT-SKYFFCDTLAEFE 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P V+KP+   S  G  VIK  Q+I      +      G   +I +     + 
Sbjct: 146 QAVTDIGIPCVVKPVMSSSGKGQSVIKSTQTIQQAWAYAQEGGRAGKGRVIVEAFIPFDY 205

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++  ++++      P                    P  +  ++  + Q ++    +A
Sbjct: 206 EITLLTISAVNGIHFCDPIGHRQE-----DGDYRESWQPQSMSAEVLHKAQAMSQRVVEA 260

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +V++ E++ +P
Sbjct: 261 LGGYGLFGVELFI--RGDEVYFSEVSPRP 287


>gi|306840400|ref|ZP_07473165.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
 gi|306289638|gb|EFM60842.1| acetyl-CoA carboxylase, biotin carboxylase [Brucella sp. BO2]
          Length = 436

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 61  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 120

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 121 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 180

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 181 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 236

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 237 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 275


>gi|218674200|ref|ZP_03523869.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium etli
           GR56]
          Length = 420

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         +  DK+ +K      G+PV P  
Sbjct: 47  DAVHPG-YGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 105

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V + +  +      + +      G+
Sbjct: 106 DGEVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVARSEADLIEAWSTARTEAAAAFGN 165

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 166 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 223

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 224 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 272

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 273 ITGI---DLVHEQIRVAS 287


>gi|45358576|ref|NP_988133.1| carbamoyl-phosphate synthase large subunit [Methanococcus
           maripaludis S2]
 gi|44921334|emb|CAF30569.1| Carbamoyl-phosphate synthase large chain [Methanococcus maripaludis
           S2]
          Length = 1081

 Score = 56.4 bits (134), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G     ++ +                     + +  ++   +PD    
Sbjct: 28  SGSQACKSLKEEGIYTILVNSNPATIQTDTNIADKVYLEPLNPKILEKIIEKEQPDAILP 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+  +   ++ ++   D         +  +    +
Sbjct: 88  TMGGQTGLNLAMELSKRGILEKHGVELLGSTESVIETSEDRDLFNKAMEEINQPIAKSAA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++P       G  +   ++ +     +   ++   Q+LI+Q
Sbjct: 148 VHSVEEAIGATKELGYPAIVRPAFTLGGTGGGIANNEEELIEITKKGLKYSMIKQVLIDQ 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +       ++  +        +  + +++++  
Sbjct: 208 SLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMG-IHTGESIVTAPSQTLSDEFHQKLRDA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    + +   G     F  +P       +E+N  P ++  S     +   GY 
Sbjct: 267 SLQIIRHLKIEGGCNVQFAVNPEMTDYVVIEVN--PRVSRSS--ALASKATGYP 316



 Score = 42.2 bits (97), Expect = 0.085,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 89/295 (30%), Gaps = 35/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--------- 66
           AL++ G +   +         D D S  L    L  +   N++                 
Sbjct: 592 ALKELGIEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFG 651

Query: 67  -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 +   L    +    +   +  L+ D+ +   V+    +P              +
Sbjct: 652 GQTAINLAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALK 711

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + ++   + +   + ++   +    +LI+++  + +E+ 
Sbjct: 712 VVERIGYPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVD 771

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  +  ++ +++          +
Sbjct: 772 VDAVCDGESVFIGAIMEHIEEAGIHSG---DSACVIPPQTLSKEVIEKIAEHTTKLALEL 828

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G+    +        V+ +E N +   T     P ++   G    ++    +
Sbjct: 829 GVIGLLNIQYAV--KDGVVYIIEANPRASRT----IPYVSKSVGVPLAKIATNAI 877


>gi|310814895|ref|YP_003962859.1| pyruvate carboxylase [Ketogulonicigenium vulgare Y25]
 gi|308753630|gb|ADO41559.1| pyruvate carboxylase [Ketogulonicigenium vulgare Y25]
          Length = 1146

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I   + +   + +            E Y++ + L   
Sbjct: 151 AAAIGYPLMLKASWGGGGRGMRPINGPEELAEKVREGRREAEAAFGNGEGYLEKMILRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      +         ++  +       PA     +  +E+  L     Q + 
Sbjct: 211 HVEVQILGDKHGQIYHLWERDCSVQRRNQKVVERAPAPYLTQEQREEICDLGRRICQHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  S K +++E+N +
Sbjct: 271 YECAGTVEFLMDMDSGKFYFIEVNPR 296


>gi|288935435|ref|YP_003439494.1| urea carboxylase [Klebsiella variicola At-22]
 gi|288890144|gb|ADC58462.1| urea carboxylase [Klebsiella variicola At-22]
          Length = 1201

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++K   GG  +G+ V +  + +             +      +++    
Sbjct: 144 CRAAEAVGYPVMLKSTAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGVFLEKYIE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        E  V         L+  +       PA    D + + +   A    +
Sbjct: 204 RARHLEVQIFGDGEGEVIALGVRDCSLQRRNQKVIEETPAPNLPDGMAQALCSAAIALGK 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D  +++ ++LE+N +     G+T      ++    G    +L+ WM
Sbjct: 264 AVNYRSAGTVEFVYDSAAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWM 312

Query: 293 VEDASCL 299
           +  A+  
Sbjct: 313 IALAAGD 319


>gi|206578981|ref|YP_002238457.1| urea carboxylase [Klebsiella pneumoniae 342]
 gi|206568039|gb|ACI09815.1| urea carboxylase [Klebsiella pneumoniae 342]
          Length = 1201

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 65/187 (34%), Gaps = 16/187 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   +  P ++K   GG  +G+ V +  + +             +      +++    
Sbjct: 144 CRAAEAVGYPVMLKSTAGGGGIGMRVCRDARELSEAFATVQRLGQNNFSDAGVFLEKYIE 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        E  V         L+  +       PA    D + + +   A    +
Sbjct: 204 RARHLEVQIFGDGEGEVIALGVRDCSLQRRNQKVIEETPAPNLPDGMAQALCSAAIALGK 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWM 292
           A+  R     +F++D  +++ ++LE+N +     G+T      ++    G    +L+ WM
Sbjct: 264 AVNYRSAGTVEFVYDSAAQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWM 312

Query: 293 VEDASCL 299
           +  A+  
Sbjct: 313 IALAAGD 319


>gi|190891557|ref|YP_001978099.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium etli CIAT
           652]
 gi|190696836|gb|ACE90921.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CIAT 652]
 gi|327193629|gb|EGE60512.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CNPAF512]
          Length = 449

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/258 (14%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         +  DK+ +K      G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V + +  +      + +      G+
Sbjct: 135 DGEVKTEEDALRTAAEIGYPVLIKATAGGGGRGMKVARSEADLIEAWSTARTEAAAAFGN 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 195 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 301

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 302 ITGI---DLVHEQIRVAS 316


>gi|297530198|ref|YP_003671473.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. C56-T3]
 gi|297253450|gb|ADI26896.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. C56-T3]
          Length = 450

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + + +  +      S             Y++       
Sbjct: 148 AASIGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGTMYIEKYIERPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A + IG
Sbjct: 208 HIEIQLLADQNGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVRAARYIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YANAGTIEFLVDEQKN-FYFLEMNTR 292


>gi|6634666|emb|CAB64531.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +    G S+ +L+  +V  A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMGISYPDLIEHLVALA 34


>gi|42521090|ref|NP_967005.1| carbamoyl phosphate synthase large subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
 gi|42410831|gb|AAS14939.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Drosophila melanogaster]
          Length = 1151

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 87/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+KV  +         D + S    +               +PD    
Sbjct: 29  SGTQSCKVLKSEGYKVILVNSNPATIMTDPEFSDATYIEPVLPEIIEKIIIKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAIKLADDGVLDKYNVELIGVNREAIKKAEDRELFRQSMDRIGLKYPKSII 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L     P +I+        G  +    +        +   +  +++ I++
Sbjct: 149 IKNQEQIKKALDYVGLPAIIRSSFTLGGAGSGIAYNKEEFFNIAESALKISPINEVQIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDVEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   +++
Sbjct: 269 IAVLREIDVSAGGANIQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVV 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327


>gi|261419844|ref|YP_003253526.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           Y412MC61]
 gi|319766658|ref|YP_004132159.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC52]
 gi|261376301|gb|ACX79044.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC61]
 gi|317111524|gb|ADU94016.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Geobacillus sp. Y412MC52]
          Length = 450

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 42/143 (29%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ + + +  +      S             Y++        + 
Sbjct: 151 IGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGTMYIEKYIERPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
              L                ++          P+    +  +      A  A + IG   
Sbjct: 211 IQLLADQNGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVRAARYIGYAN 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL D      ++LE+N +
Sbjct: 271 AGTIEFLVDEQKN-FYFLEMNTR 292


>gi|330973005|gb|EGH73071.1| Urea amidolyase-related protein [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 762

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/188 (17%), Positives = 66/188 (35%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPYGMAEELCA----AAVKLA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 311

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 312 MVQLAAGD 319


>gi|311067614|ref|YP_003972537.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
 gi|310868131|gb|ADP31606.1| carbamoyl phosphate synthase large subunit [Bacillus atrophaeus
           1942]
          Length = 1030

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++                        S+  ++   KPD    
Sbjct: 29  SGTQGCMALKEEGYRVILVNNNPATIMTDEAFADEIYFEPLTTDSLKEIIKKEKPDGLLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +               +++  T    +      +K RS     +  VP    
Sbjct: 89  NLGGQTALNLAVELEKAEVLKANGVKLLGTSVDTIEKGEDREKFRSLMKELNQPVPDSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    +     + Q+   +   Q LIE+
Sbjct: 149 VDNEEDALRFAEAIGFPVIVRPAYTLGGKGGGIAPSKEVFLPLIKQALLASPIHQCLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I V   +       ++  +        +  + Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSKNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDEDYQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DPLS++ + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLTIISALDVVGGCNIQFALDPLSKQYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/294 (15%), Positives = 97/294 (32%), Gaps = 34/294 (11%)

Query: 26  LEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFNVLHGNFGE 64
           L+  GF+   I+                         +  V  H   D A     G    
Sbjct: 585 LQKLGFETIMINNNPETVSTDYEIADRLYFEPITTEHILNVAEHEDIDFAIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   +     + +  T    L +    D+                +       +     I
Sbjct: 645 NAAEELEKAGITLLGTSFETLDALEDRDQFYKLLDELGLAHAKGETAYSKEEAVQKAKGI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P +I+P      +G+++++ ++++   L   ++  +   +LI+QY+ G E+   ++ D
Sbjct: 705 GYPVLIRPSYVIGGMGMMIVESEEALSQLLDDENAMPY--PILIDQYISGKEVELDLISD 762

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGI 243
                     P    +       S +S  VLP      +  + +++ A    Q +  +GI
Sbjct: 763 GEEVFI----PTYVEHIERAGVHSGDSFAVLPGPSLTAEQEQGMKKAARKIAQKLSFKGI 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+ D  +  +  LE+N +   T     P ++   G     L   ++  AS
Sbjct: 819 MNIQFVID--NGNILVLEVNPRASRT----VPVVSKVMGVQMIPLATQLLAGAS 866


>gi|323349797|gb|EGA84012.1| Dur1,2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 1686

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|323334643|gb|EGA76017.1| Dur1,2p [Saccharomyces cerevisiae AWRI796]
          Length = 1835

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|190408639|gb|EDV11904.1| urea amidolyase [Saccharomyces cerevisiae RM11-1a]
 gi|290878226|emb|CBK39285.1| Dur1,2p [Saccharomyces cerevisiae EC1118]
 gi|323356142|gb|EGA87947.1| Dur1,2p [Saccharomyces cerevisiae VL3]
          Length = 1835

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|151946596|gb|EDN64818.1| urea amidolyase [Saccharomyces cerevisiae YJM789]
          Length = 1835

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|149925596|ref|ZP_01913860.1| probable acyl-coa carboxylase alpha chain protein [Limnobacter sp.
           MED105]
 gi|149825713|gb|EDM84921.1| probable acyl-coa carboxylase alpha chain protein [Limnobacter sp.
           MED105]
          Length = 683

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 55/183 (30%), Gaps = 19/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   GI ++     +   L                 ++   +   
Sbjct: 148 AERIGFPLMIKAVAGGGGKGIRIVNSAAELQAALESCQREAKNAFGDATVMLEKQIIQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +       T   V          +          PA    +  +E   R A    +A+ 
Sbjct: 208 HVEVQVFADTHGNVVHLFERDCSAQRRHQKVIEEAPAFGLTEQQREAFGRTAVQVAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +FL D    + +++E+N       P         EM      +  +L+ W +E
Sbjct: 268 YVGAGTVEFLLDAR-GEFYFMEMNTRLQVEHP-------VTEM-----ITGFDLVQWQIE 314

Query: 295 DAS 297
            A+
Sbjct: 315 IAA 317


>gi|6319685|ref|NP_009767.1| Dur1,2p [Saccharomyces cerevisiae S288c]
 gi|585072|sp|P32528|DUR1_YEAST RecName: Full=Urea amidolyase; Includes: RecName: Full=Urea
           carboxylase; Includes: RecName: Full=Allophanate
           hydrolase
 gi|536588|emb|CAA85172.1| DUR1,2 [Saccharomyces cerevisiae]
 gi|256273778|gb|EEU08702.1| Dur1,2p [Saccharomyces cerevisiae JAY291]
 gi|285810540|tpg|DAA07325.1| TPA: Dur1,2p [Saccharomyces cerevisiae S288c]
          Length = 1835

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLERFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|294673745|ref|YP_003574361.1| carbamoyl-phosphate synthase large subunit [Prevotella ruminicola
           23]
 gi|294471997|gb|ADE81386.1| carbamoyl-phosphate synthase, large subunit [Prevotella ruminicola
           23]
          Length = 1094

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G K   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIKSVLVNPNIATIQTSEGIADKVYFQPVNTHFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G +  +   L+   +    + + A   + D+    + +    + V    +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKEYGVEVLGTSVEAIMNTEDRDLFVKKLGEVDLKVPVSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + H I  P +I+       LG  +   ++        + ++    Q+L+E+
Sbjct: 147 VESMEDALKAAHEIGFPIMIRSAYALGGLGSGICPDEKKFIELAESAFTFAP--QILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q +
Sbjct: 205 SLKGW-KEIEFECIRDANDRCFTVASMENFDPLGIHTGESIVVAPTCSLREEQVKMLQEI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                + +G  G     F F+  +     +EIN +  ++  S     +   GY    +  
Sbjct: 264 TIKCVKHLGIVGECNIQFAFNAETNDYRIIEINAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|170733678|ref|YP_001765625.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia MC0-3]
 gi|169816920|gb|ACA91503.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia MC0-3]
          Length = 404

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    +  ++   +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYQDAPGHQVAHRAHVIDMTDPAALRAIIEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIETAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFEAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K D  +      +      +  ++++E +VD   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     K+ + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDYVESWQPQPMSAAALKKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|1814248|gb|AAB41854.1| D-Alanine:D-Alanine ligase [Streptococcus mutans]
          Length = 198

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +KP   GSS+GI   +    +   +  +    +  ++LIEQ VD  E+  G
Sbjct: 58  EEKLIYPVFVKPANMGSSVGISKAENRTDLKQAIALAL--KYDSRVLIEQGVDAREIEVG 115

Query: 181 V--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           +    D    +    V    FY YE KY     T  +PA+I   I ++++     A + +
Sbjct: 116 ILGNTDVKTTLPGEIVKVVAFYDYEAKYIDNKITMAIPAEIDPVIVEKMRDYRATAFRTL 175

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           GC G+SR DF       KV+  E
Sbjct: 176 GCCGLSRCDFFLTE-DGKVYLNE 197


>gi|330957833|gb|EGH58093.1| urea amidolyase-like protein [Pseudomonas syringae pv. maculicola
           str. ES4326]
          Length = 817

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARSIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D    E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGDVLALGVRDCSVQRRNQKVLEETPAPNLPDSMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|56420134|ref|YP_147452.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           kaustophilus HTA426]
 gi|56379976|dbj|BAD75884.1| biotin carboxylase [Geobacillus kaustophilus HTA426]
          Length = 450

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 43/143 (30%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ + + +  +      S             Y++        + 
Sbjct: 151 IGYPVMLKASAGGGGIGMHIARDEAELRQAFEGSQKRAASFFGDGTMYIEKYIDRPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
              L  +             ++          P+    +  +      A  A + IG   
Sbjct: 211 IQLLADSYGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVRAARYIGYAN 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL D      ++LE+N +
Sbjct: 271 AGTIEFLVDEQKN-FYFLEMNTR 292


>gi|13541634|ref|NP_111322.1| carbamoyl phosphate synthase large subunit [Thermoplasma volcanium
           GSS1]
 gi|22095519|sp|Q97AJ3|CARB_THEVO RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|14325033|dbj|BAB59959.1| carbamoyl-phosphate synthase beta subunit [Thermoplasma volcanium
           GSS1]
          Length = 1044

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 90/303 (29%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S      +L + G++V  ++ +                      +V  ++   + D    
Sbjct: 29  SASQACRSLREEGYEVVLLNSNPATIQTDHEIADRVYIEPITVEAVETIIRKEEIDAIEP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         I++   I    + + +  +S D+ +    + S G        
Sbjct: 89  HMGGQTALNLVVSLKKMGIIDKYGIKIIGTPVESIEISEDRQKFHDFLISIGERDPERYR 148

Query: 113 VNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++R     +    P  P +++        G  ++K  + +     +       D + + +
Sbjct: 149 ISRSNYKEEIEKIPFMPVIVRTSFSLGGSGGNIVKTKEELKAYAEELFRGIDEDYIEVNR 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
            + G  L           +       +      +   +  S  V P++   DI   + + 
Sbjct: 209 SLAG--LKELEYEMIRDSIGNCITVCNMENLDPMGVHTGESIVVTPSQTLSDIQYHMLRD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A      +G  G     F  D      + +E+N +   T  S     +   GY    + 
Sbjct: 267 AAIKIVSGLGIVGACNIQFALD--GNDYYVVEVNPR---TSRSS-ALASKATGYPIARIA 320

Query: 290 LWM 292
             +
Sbjct: 321 AKI 323


>gi|319407302|emb|CBI80943.1| Biotin carboxylase [Bartonella sp. 1-1C]
          Length = 452

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   I    D D                       ++  +++  +  
Sbjct: 14  ALRILRACKELGIKTVAIHSTADADAMHVRLADESVCIGPPHSRDSYLNIYQIISACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE   I +         +  DK+ +K+   S G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                I+  +  +   + I  P +IK   GG   G+ V   +Q +      + S     +
Sbjct: 133 GSDNAIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N     + +       +   ++GD + +   +            ++  +      P    
Sbjct: 193 NDDSVYIEKYLEKPRHIEIQIIGDGAGNAIHLGERDCSLQR---RHQKVWEEAYSPILNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K    +A    + +G RG    +FL+   + + +++E+N +
Sbjct: 250 AERKKIGNIVANACAK-LGYRGAGTVEFLY--ENGEFYFIEMNTR 291


>gi|225574486|ref|ZP_03783096.1| hypothetical protein RUMHYD_02563 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038273|gb|EEG48519.1| hypothetical protein RUMHYD_02563 [Blautia hydrogenotrophica DSM
           10507]
          Length = 1068

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T S  +  A    + +         V     +
Sbjct: 90  LGGQAGLNLAMELEEAGFLREHHVRLIGTTSETIKKAEDRQEFKDTMEKIGEPVAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++  + I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 TTVQEGVEFTNSIGYPVVLRPAYTLGGSGGGIANNEFELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/291 (14%), Positives = 93/291 (31%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   KPD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVENIVNIEKPDGAVVQFGGQTA 640

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  I   ++I  T +  + +A   +             P   ++        + + 
Sbjct: 641 IKLTEALIRMGVKILGTSAENVDAAEDRELFDQILEECEIPRPKGHTVYTAEEAKKAANE 700

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   DQ +   +   +       +L+++Y+ G E+    + 
Sbjct: 701 LGYPVLVRPSYVLGGQGMQIAINDQDVEEFIGIINRIAQEHPILVDKYLMGKEIEVDAVC 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+   +   K ++       +++   G
Sbjct: 761 DGEEILI----PGIMEHIERAGIHSGDSISVYPAQTISETAKKTIEEYTRRLAKSLHVIG 816

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 817 MINIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861


>gi|300173172|ref|YP_003772338.1| carbamoyl-phosphate synthase pyrimidine-specific large subunit
           [Leuconostoc gasicomitatum LMG 18811]
 gi|299887551|emb|CBL91519.1| Carbamoyl-phosphate synthase pyrimidine-specific large chain
           [Leuconostoc gasicomitatum LMG 18811]
          Length = 1059

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G+ V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   ++ ++     +  +P    
Sbjct: 89  TLGGQTGLNMAKDLSEAGILDDLNIELLGTKLSAIEEAEDREEFKALMERLNEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++     S P +++P       G  + +  + +          +   Q+LIE+
Sbjct: 149 ATTLEEALEFADTHSYPVIVRPAYTLGGTGGGIAETHEELTEIAANGLELSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +       T  +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDAHDNALVVASMENFDPVGIHTGDSIVTAPVQTLSDREVQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPNSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQRAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLENPIGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +             P+  +       + +  
Sbjct: 639 AINLAQPLTENGVHILGTTVEDLNRAEDREAFDQVIKQLKLPQPIGKTATTVPGALAAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P        + ++  D+ +   + ++   ++   +LI+ Y+ G E    V+
Sbjct: 699 EIGYPVLIRPSYVLGGRAMEIVTSDEELNDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  + +   P  +   +  E+ + A    QA+   G
Sbjct: 759 SDGETVVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQDEMTQAAINLAQAMNTIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+        + +E+N +   T     P ++        +L   
Sbjct: 816 LMNVQFVIHE--NTAYVIEVNPRASRT----VPFISKVTHIPLAQLATR 858


>gi|256159627|ref|ZP_05457389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|256254907|ref|ZP_05460443.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|261222089|ref|ZP_05936370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|265998054|ref|ZP_06110611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
 gi|260920673|gb|EEX87326.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           B1/94]
 gi|262552522|gb|EEZ08512.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella ceti
           M490/95/1]
          Length = 452

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 253 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|254689155|ref|ZP_05152409.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260754654|ref|ZP_05867002.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
 gi|260674762|gb|EEX61583.1| acetyl-CoA carboxylase biotin carboxylase subunit [Brucella abortus
           bv. 6 str. 870]
          Length = 452

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 137 GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 197 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 253 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|194289329|ref|YP_002005236.1| pyruvate carboxylase [Cupriavidus taiwanensis LMG 19424]
 gi|193223164|emb|CAQ69169.1| putative Pyruvate carboxylase [Cupriavidus taiwanensis LMG 19424]
          Length = 1200

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 80/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    + D      +G   E+      +    I +            +K+ 
Sbjct: 99  LDID-DILRIARQARVDAIHPG-YGFLSENPEFAQAVIDAGIRWVGPLPEVMRKLGNKVA 156

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           ++    + GVPV P+                 I  P ++K   GG   G+ V++ +Q + 
Sbjct: 157 ARNAAIAAGVPVMPATDPLPHDLEACKRLAAAIGYPLMLKASWGGGGRGMRVLEGEQDLE 216

Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                      +++ + +  + +   +   +   V+GD   ++  +            K 
Sbjct: 217 GALAAARREALAAFGNDEVYVEKLVRNARHVEVQVLGDTHGNLVHLYERDCTVQRRNQKV 276

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L A     +       A    +A+G       +FL D  S + +++E+N +
Sbjct: 277 VERAPAPYLDAAGRGALCD----SALRLMRAVGYTHAGTVEFLMDADSGQFYFIEVNPR 331


>gi|317497527|ref|ZP_07955846.1| pyruvate carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|291558360|emb|CBL37160.1| pyruvate carboxylase [butyrate-producing bacterium SSC/2]
 gi|316895210|gb|EFV17373.1| pyruvate carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 1153

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVS---------------------------QID--VDRSVGLVLAHL 49
                 AL + G                                ID  +D +  + +A  
Sbjct: 18  AIRVFRALNELGITTVGVFSKEDRYALFRSKADESYQLNPDKGPIDAYLDINTIIRIAKE 77

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K   A +  +G   E+       E   I +            DK+ SKQ+     VP+ P
Sbjct: 78  KNVDAIHPGYGFLSENPDFVDACEKNGITFIGPSSSLMRKMGDKISSKQMAIEADVPIIP 137

Query: 110 SILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
            +              + +  P ++K   GG   G+ ++   + +P +  ++   +    
Sbjct: 138 GVDHAVHGLEEVTKIANQVGYPVMLKASNGGGGRGMRIVHSAEEMPKEYAEARDESKKAF 197

Query: 163 --GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   ++GD    V  +            K         +P    
Sbjct: 198 GDDQIFVEKYLKSPKHIEVQIIGDQYGHVVHLYDRDCSVQRRHQKVVEYAPAFSVPE--- 254

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ +++   +    + +G +     +FL D  +   +++E+N +
Sbjct: 255 -EVRQQIFEASIRLAKHVGYKNAGTLEFLVDADNNA-YFIEMNPR 297


>gi|254465175|ref|ZP_05078586.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacterales
           bacterium Y4I]
 gi|206686083|gb|EDZ46565.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacterales
           bacterium Y4I]
          Length = 449

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 76/216 (35%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I+E   + +         +  DK+ +K+   + G+PV P     +   
Sbjct: 82  YGFLSENANFVQIIEDHGLTFIGPSAEHIRIMGDKITAKETAKNLGIPVVPGSEGGVPDI 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                +   +  P +IK   GG   G+ V K ++ +      + S     + + +  + +
Sbjct: 142 AAAKKAAKDMGYPVIIKATAGGGGRGMKVAKDEKELVSAFSTARSEAKAAFGNDEVYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +A           ++  +      P   P +  +  + 
Sbjct: 202 YLQKPRHIEVQVFGDGKGTGVHLAERDCSLQR---RHQKVFEEAPGPCITPEERARIGKI 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    + +G  G    +FL+     + +++E+N +
Sbjct: 259 CADAIGK-MGYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|167766698|ref|ZP_02438751.1| hypothetical protein CLOSS21_01204 [Clostridium sp. SS2/1]
 gi|167711635|gb|EDS22214.1| hypothetical protein CLOSS21_01204 [Clostridium sp. SS2/1]
          Length = 1155

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVS---------------------------QID--VDRSVGLVLAHL 49
                 AL + G                                ID  +D +  + +A  
Sbjct: 20  AIRVFRALNELGITTVGVFSKEDRYALFRSKADESYQLNPDKGPIDAYLDINTIIRIAKE 79

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K   A +  +G   E+       E   I +            DK+ SKQ+     VP+ P
Sbjct: 80  KNVDAIHPGYGFLSENPDFVDACEKNGITFIGPSSSLMRKMGDKISSKQMAIEADVPIIP 139

Query: 110 SILVNRF----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--- 162
            +              + +  P ++K   GG   G+ ++   + +P +  ++   +    
Sbjct: 140 GVDHAVHGLEEVTKIANQVGYPVMLKASNGGGGRGMRIVHSAEEMPKEYAEARDESKKAF 199

Query: 163 --GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   ++GD    V  +            K         +P    
Sbjct: 200 GDDQIFVEKYLKSPKHIEVQIIGDQYGHVVHLYDRDCSVQRRHQKVVEYAPAFSVPE--- 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ +++   +    + +G +     +FL D  +   +++E+N +
Sbjct: 257 -EVRQQIFEASIRLAKHVGYKNAGTLEFLVDADNNA-YFIEMNPR 299


>gi|328551914|gb|AEB22406.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus
           amyloliquefaciens TA208]
 gi|328910174|gb|AEB61770.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus
           amyloliquefaciens LL3]
          Length = 384

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 80/273 (29%), Gaps = 34/273 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +AV     S E         A  +A      K   ID+     V  V+   KPDL    +
Sbjct: 31  VAV----DSYEH------APAMQAA-----HKSYVIDMLDKAQVREVIEKEKPDLIVPEV 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ L         IP   +  L       +  + + +                  
Sbjct: 76  EAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLHLPT-AGYEFANTYEECK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P V+KPL   S  G  V +    +               +   +  +G  + 
Sbjct: 135 EAAETIGFPCVVKPLMSSSGKGQSVCRSASELKS--------CWDMAMEGGRVKNGRVI- 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V  ++  S+                  P  +     +E + +A  
Sbjct: 186 VEEFIPFESEITLLTVRAANGTSFCAPIGHEQKDGDYMESWQPHHMTEQQVEEAKHIAKS 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +G  G+   +        KV++ E++ +P
Sbjct: 246 ITDELGGYGLFGVELFLTQ--DKVYFSEVSPRP 276


>gi|153812946|ref|ZP_01965614.1| hypothetical protein RUMOBE_03353 [Ruminococcus obeum ATCC 29174]
 gi|149831024|gb|EDM86114.1| hypothetical protein RUMOBE_03353 [Ruminococcus obeum ATCC 29174]
          Length = 1071

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 88/290 (30%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A +  G++   +         D D              V  ++   KPD A     G   
Sbjct: 584 AFKKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVENIVNIEKPDGAVVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   ++I  T +  + +A   +             P   ++        + + 
Sbjct: 644 IKLTEALMKMGVKILGTSAEDVDAAEDRELFDEILEKCEIPRPKGQTVFTAEEAKKAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMRIAVSDEDVEEYIGIINQIAQEHPILVDKYLMGKEIEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +        S         ++   D    +        +A+   G+
Sbjct: 764 DGEDILIPGIMEHIERAGIHSGDSISVYPAQTISQRAKDT---IAEYTRRLAKALHVVGM 820

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 821 INIQFIVC--GEEVYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 864



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGMEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + +         V     +
Sbjct: 90  LGGQAGLNLAMELEEKGFLKEHNVRLIGTTAETIKKAEDRQEFKDTMEKIGEPVAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 TTVEDGVAFTKKIGYPVVLRPAYTLGGSGGGIANNEYELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S+          +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSVGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|111224074|ref|YP_714868.1| carbamoyl phosphate synthase large subunit [Frankia alni ACN14a]
 gi|111151606|emb|CAJ63325.2| carbamoyl phosphate synthase, glutamine amidotransferase large
           subunit [Frankia alni ACN14a]
          Length = 1101

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       VG ++A  +PD    
Sbjct: 29  SGTQACRVLKSEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVGRIIARERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         IL    +    + + A     ++ R K VV +    +     
Sbjct: 89  TLGGQTALNTAIALHESGILVKYGVELIGANVEAIHKGENRERFKAVVEAVRRKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ACSVLCHSMDDVLVGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTS 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +     +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENVDPLGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N + G    ++    +   G+ 
Sbjct: 269 ILRDIGIAVMREVGVDTGGCNIQFAVNPDDGRVIVIEMNPR-GSRSSAL---ASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAARL 332


>gi|476024|gb|AAA29522.1| carbamoyl phosphate synthetase II [Plasmodium falciparum]
          Length = 2391

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/296 (10%), Positives = 85/296 (28%), Gaps = 33/296 (11%)

Query: 18   SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
            SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 712  SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 771

Query: 57   VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
               G            + +L+        + + +  ++ ++     K    +  +    S
Sbjct: 772  TFGGQTALNCALMLDQKKVLKKNNCQCLGTSLESIRITENRTLFAEKLKEINERIAPYGS 831

Query: 111  ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +D  + I  P +++       L    I  ++ +             +++ I++
Sbjct: 832  AKNVNQAIDIANKIGYPILVRTTFSLGGLNSSFINNEEELIEK-CNKIFLQTDNEIFIDK 890

Query: 171  YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 891  SLQGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYEYYKFREI 949

Query: 231  AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 950  ALKVITHLNIIGECNIQFGINPQTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 1001



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 98/308 (31%), Gaps = 33/308 (10%)

Query: 7    GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDL---- 53
            G S E +    S   C   +     K   I         D D S  L    +  ++    
Sbjct: 1870 GSSVEFD---WSAIHCVKTIRKLNHKAILINCNPETVSTDYDESDRLYFDEITTEVIKFI 1926

Query: 54   --------AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                          G    + +       + I  +   +L         R+  ++     
Sbjct: 1927 YNFENSNGVIIAFGGQTSNNLVFSLYKNNVNILGSVHKVLIVVKIGINFRTYVILKIDQ- 1985

Query: 106  PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            P           +   + +  P +++P    S   + V+   + +   L++++  +  + 
Sbjct: 1986 PKWNKFTKLSKAIQFANEVKFPVLVRPSYVLSGAAMRVVNCFEELKNFLMKAAIVSKDNP 2045

Query: 166  LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            ++I ++++  +         +  +   A+ +    +      +          I ++ ++
Sbjct: 2046 VVISKFIENAKEIEIDCVSKNGKIINYAISEHVENAGVHSGDATLILPAQ--NIYVETHR 2103

Query: 226  EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++++    +++   G     F+      ++  +E N    +     FP ++     +F
Sbjct: 2104 KIKKISEKISKSLNISGPFNIQFICHQ--NEIKIIECN----LRASRTFPFISKALNLNF 2157

Query: 286  RELLLWMV 293
             +L   ++
Sbjct: 2158 IDLATRIL 2165


>gi|7157927|gb|AAF37343.1|AF170804_1 D-alanine:D-alanine ligase [Enterococcus durans]
          Length = 200

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GS +GI   +  + +   L  +  ++   
Sbjct: 44  LKNQWKENPKKVFDQCEGSLLYPMFVKPANMGSGVGISKAENREELQNALRTAYQYDSRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V    FY Y+ KY +      +PA++P ++Y
Sbjct: 104 IVEQGIEAREIEVAVLGNEDVRTTLPGEVVKDVAFYDYDAKYINNKIEMQIPAEVPEEVY 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ Q  A LA+  +G  G+SR DF       ++F  E
Sbjct: 164 QKAQEYAKLAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|77460171|ref|YP_349678.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           fluorescens Pf0-1]
 gi|77384174|gb|ABA75687.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens Pf0-1]
          Length = 653

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ ++   + +P  L  +     + +   + +L +  ++  
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVHSAEELPAQLRTARSEALNGFGSDELILEQALIEPR 209

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD    +  +            +             +  ++ + +   A  A 
Sbjct: 210 HVEVQLFGDHHGQLIYLGERDCSIQ----RRHQKVIEEAPCPVMTEELRQAMGEAALKAG 265

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D    + ++LE+N +
Sbjct: 266 RAVNYVGAGTVEFLLDT-DGRFYFLEMNTR 294


>gi|116618307|ref|YP_818678.1| carbamoyl-phosphate synthase large subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
 gi|122271493|sp|Q03WW7|CARB_LEUMM RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116097154|gb|ABJ62305.1| carbamoyl-phosphate synthase large subunit [Leuconostoc
           mesenteroides subsp. mesenteroides ATCC 8293]
          Length = 1059

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G+ V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYHVILVNSNPATIMTDAEIADKVYIEPLSIDFIERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   ++ ++     +  +P    
Sbjct: 89  TLGGQTGLNMAKDLSEAGILDELNIELLGTKLSAIEEAEDREEFKALMERLNEPIPESII 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +++       P +++P       G  + +  + +          +   Q+LIE+
Sbjct: 149 ATTLEESLNFADTHGYPVIVRPAYTLGGTGGGIAQTHEELSEITANGLELSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +       T  +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDANDNALVVASMENFDPVGIHTGDSIVTAPVQTLSDREVQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPDSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQRAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLENPVGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   + I  T    L  A   +         +   PV  +       + +  
Sbjct: 639 AINLAQPLLDNGVNILGTSVEDLNRAEDREAFDQVIKELALPQPVGKTATTVDCALAAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+
Sbjct: 699 SIGYPVLIRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  + +   P  +   +  E+ + +    +A+   G
Sbjct: 759 SDGETAVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQDEMVQASINLAKAMNTIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+        + +E+N +   T     P ++        +L   
Sbjct: 816 LMNVQFVIHE--NTAYVIEVNPRASRT----VPFISKVTHLPLAQLATR 858


>gi|121533983|ref|ZP_01665809.1| pyruvate carboxylase [Thermosinus carboxydivorans Nor1]
 gi|121307494|gb|EAX48410.1| pyruvate carboxylase [Thermosinus carboxydivorans Nor1]
          Length = 1146

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 80/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D S+  V      D      +G   E+  +        + +    +    +  DK++
Sbjct: 64  LDID-SIINVAKKNNVDAIHPG-YGFLAENMDLAKRCAEEGLIFIGPRLEHLNMFGDKIK 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + G+P+ P     +               P +IK   GG   G+ +++  +S+ 
Sbjct: 122 ARNQAITAGLPIIPGTDGPVQSIDEVKAFAMKHGFPIIIKASAGGGGRGMRIVRGPESLS 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+ +      +    L   E  +         ++      
Sbjct: 182 EAYHRAKSEAKTSFGNDEIYVEKLLENTKHIEVQILGDAEGNIVHLYERDCSVQRRHQKM 241

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P+    D + + V   A    + +        +FL  P   K +++E+N +
Sbjct: 242 VEIAPSIAFSDSLRQAVCDAAVKLMKHVNYLSAGTVEFLVTP-DEKFYFIEVNPR 295


>gi|300934238|ref|ZP_07149494.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           resistens DSM 45100]
          Length = 418

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 72/281 (25%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       S+  ++ H++PD     +
Sbjct: 33  GKEVAIAFQRLGVEVHAADRYAGAPAHHVANRAHVLNLTDAASIRDLVEHVRPDFIVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++        L  +  T      +                               
Sbjct: 93  EAIATDELQRIEEEGLATVVPTARATRLTMNREGIRTLASEELGLPTSAHSFASTFEELA 152

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--IEQYVDGIE 176
            +   I  P V+KP+   S  G   +     +      + S    +     +EQY+    
Sbjct: 153 LAAEDIGYPCVVKPIMSSSGKGQTFVAGPDELEEAWNVAISSARVNTHRVIVEQYIPFDY 212

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T              +          PA++  +       +A     
Sbjct: 213 EVTILTVRSVDPQTGAEATWFCEPIGHRQDRGDYVESWQPAEMSAEALDNAHSVAARVTN 272

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           A+G RG+   +         V++ E++ +P      +    
Sbjct: 273 ALGGRGVYGVELFV--KGDDVYFSEVSPRP--HDTGMVTMA 309


>gi|325520549|gb|EGC99631.1| biotin carboxylation region [Burkholderia sp. TJI49]
          Length = 558

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 58/181 (32%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +           + +      Y++       
Sbjct: 148 AAAIGYPVMLKSTAGGGGIGMSLCRDAAQLEAAFESVVRLGNANFAHAGVYLEKFVEHAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA    D     +   A    +A+G
Sbjct: 208 HIEVQIFGDGRGNAIALGERDCSVQRRNQKVIEETPAPDLTDAERGALHASAVRLARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
                  +F+FD  +R+ ++LE+N +     G+T         A  G    +L+ WM+  
Sbjct: 268 YASAGTVEFVFDASTRQFYFLEVNTRLQVEHGVTE--------AVTGI---DLVEWMILQ 316

Query: 296 A 296
           A
Sbjct: 317 A 317


>gi|239978398|ref|ZP_04700922.1| carbamoyl phosphate synthase large subunit [Streptomyces albus
           J1074]
 gi|291450295|ref|ZP_06589685.1| carbamoyl-phosphate synthase subunit large [Streptomyces albus
           J1074]
 gi|291353244|gb|EFE80146.1| carbamoyl-phosphate synthase subunit large [Streptomyces albus
           J1074]
          Length = 1101

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/308 (10%), Positives = 84/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIAKERPDALLP 88

Query: 57  VL------------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L            HG    D     ++                  + +   +++     
Sbjct: 89  TLGGQTALNTAISLHGAGILDEYGVELIGANVEAINKGEDRDLFKGVVEAVREKIGHGES 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   ++      + L   P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVEELGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|167759664|ref|ZP_02431791.1| hypothetical protein CLOSCI_02023 [Clostridium scindens ATCC 35704]
 gi|167662695|gb|EDS06825.1| hypothetical protein CLOSCI_02023 [Clostridium scindens ATCC 35704]
          Length = 1065

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/293 (13%), Positives = 93/293 (31%), Gaps = 36/293 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   +         D D              V  ++   +PD A     G   
Sbjct: 581 AFAKEGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDLEQPDGAVVQFGGQ-- 638

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQ 121
               +   L  + +P   +       + D+    +++  C +P      +       +  
Sbjct: 639 TAIKLTEALMKMGVPILGTSAENVDAAEDRELFDEILEQCQIPRPTGGTVFTAEEAKEVA 698

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  P +++P       G+ +   D  I   +   +       +L+++Y+ G E+    
Sbjct: 699 GRLGYPVLVRPSYVLGGQGMQIAINDHDIDEFIGIINRIAQDHPILVDKYLQGKEIEVDA 758

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGC 240
           + D    +     P    +       S +S  V PA+   +   + ++       +++  
Sbjct: 759 VCDGEDILI----PGIMEHIERAGIHSGDSISVYPAQSITEKTKRTIEDYTKKLARSLHV 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 815 IGLINIQFIVCGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATKVI 861



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/317 (10%), Positives = 90/317 (28%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGLEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLVLKEKPDSVLPT 89

Query: 58  LHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----I 111
           L G         ++    L        G  +  +   + R +   +   +    +    +
Sbjct: 90  LGGQAALNLAMELEENGFLRRNNVRLIGTTSETIKKAEDRLEFKTTMEKIGEPCAASLVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++    I  P V++P       G  +      +   L      +   Q+L+E+ 
Sbjct: 150 ESVEEGIEFAEKIGYPVVLRPAYTLGGSGGGIAGDRVQLVEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGNGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +   G     +   P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISELNITGGCNVQYALHPETFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        + +A   +
Sbjct: 325 IALGYTLDEIRNAVTRK 341


>gi|148263883|ref|YP_001230589.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           uraniireducens Rf4]
 gi|146397383|gb|ABQ26016.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Geobacter
           uraniireducens Rf4]
          Length = 446

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 87/284 (30%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A ++ G K   +       S+ + LA                  +   +     
Sbjct: 14  ALRVIRACKELGIKTVAVYSTADSESLHVKLADESVCIGPAPSLQSYLNINAIISAAELT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
                    G   E+     I E   I +      +  L  DK+ ++Q V   GVP+   
Sbjct: 74  DAEAIHPGYGFLSENAAFAEICENCGITFIGPSSESMRLMGDKISARQAVIKEGVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +      +     I  P +IK   GG   G+ ++    ++P           + + 
Sbjct: 134 TKEGVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPATLPNAFATARAEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +   +   +   ++ D   +V  +            +                
Sbjct: 194 NPEVYIEKYCEEPRHVEIQILADKHGNVIHLGERDCSIQ----RRHQKIIEEAPSTVSTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ K +   A  A +A+G   +   +FL D  +   +++E+N +
Sbjct: 250 ELRKAMGDAAVRAAKAVGYNSVGTMEFLVD-KNNDFYFMEMNTR 292


>gi|1171003|sp|P46927|PURT_PASHA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2;
           Short=GART 2; AltName: Full=Membrane protein antigen 1
 gi|469475|gb|AAB28915.1| Mpa1 [Mannheimia haemolytica]
          Length = 392

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/299 (15%), Positives = 83/299 (27%), Gaps = 37/299 (12%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                   +D + +  ++   KPD     +
Sbjct: 24  GKEVVIELQPLGVEVIAVDRYDNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEQFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I        S   G        V+G    
Sbjct: 143 QAIQEIGIPCVVKPIMSSSGHGQSVIKSEADIQQA--WDYSQQGGRAGGGRVIVEG---F 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                + +                 ++          P ++     K+ Q  A     A+
Sbjct: 198 IKFDYEITQLTVRHIHGIVFSSHRHIQVDGDYRESWQPQQMSDIALKKAQETAEKITSAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYSFREL 288
           G RGI   +        ++ + E++ +P  T         +S F   A    G    E+
Sbjct: 258 GGRGIFGVELFVC--GDEIIFNEVSPRPHDTGIVTMASQELSQFALHARAILGLPIPEI 314


>gi|294852261|ref|ZP_06792934.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
 gi|294820850|gb|EFG37849.1| acetyl-CoA carboxylase [Brucella sp. NVSL 07-0026]
          Length = 413

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 77/221 (34%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE  +I +         +  DK+ +K+     G+PV P    
Sbjct: 38  AIHPGYGFLSENAKFAEILEAHDITFIGPTASHIRIMGDKIEAKRTAKRLGIPVVPGSDG 97

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +  + +P+ L  + S     +    
Sbjct: 98  GVTDEVEAARIAKEIGYPVIIKASAGGGGRGMKVARSAEELPIALATARSEAGAAFGDDA 157

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD + +   +            +             +  +  
Sbjct: 158 VYIEKYLEKPRHIEVQVMGDGAGNAVHLGERDCSLQ----RRHQKVWEEGNSPALNAEAR 213

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +   A   +G RG    +FL+     + +++E+N +
Sbjct: 214 EKIGMICANACAELGYRGAGTIEFLY--EDGEFYFIEMNTR 252


>gi|150396174|ref|YP_001326641.1| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           medicae WSM419]
 gi|150027689|gb|ABR59806.1| acetyl-CoA carboxylase, biotin carboxylase [Sinorhizobium medicae
           WSM419]
          Length = 447

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/257 (16%), Positives = 86/257 (33%), Gaps = 28/257 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFAEILEAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     ++    I  P +IK   GG   G+ V + +  +   +  + S      G+ 
Sbjct: 135 DGEVKPENALEIARQIGFPVLIKATAGGGGRGMKVARTEAELENAVATARSEAAAAFGND 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      +      +    A+   +      +             + ++   
Sbjct: 195 AVYMEKFLGKPRHIEIQVVGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
            + ++   A Q +  RG    +FL+   + + +++E+N       P +T         A 
Sbjct: 253 NIGQICAEAMQKLKYRGAGTVEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------AI 301

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+   +  AS
Sbjct: 302 TGI---DLVHEQIRVAS 315


>gi|322500070|emb|CBZ35146.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 516

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 20/251 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT +      +S   M+ 
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTGAISKYYEMSKPDMKL 120

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLL 155
                +        +            +  P +IK + G SS+G+    K      L   
Sbjct: 121 VAYYYNIATANYVVLEPGADIERLCGDLQFPCIIKHISGYSSVGMDKSCKVHDMAQLVDR 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELK 205
            +         L+E++V G E T     D++        P              +  +  
Sbjct: 181 ATRFMAEYQFALVEEFVSGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLKWA 240

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINV 264
                    +P + P  +   +        + +G  G  R D   D   + +V +LEIN 
Sbjct: 241 SYEGMQWTQVPQEDP-ALQNMIDIARCAFKRMMGGIGYGRIDVRIDRQNNNRVVFLEINP 299

Query: 265 QPGMTPVSIFP 275
             G+    ++P
Sbjct: 300 NCGI----MYP 306


>gi|190571308|ref|YP_001975666.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|213018705|ref|ZP_03334513.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
 gi|190357580|emb|CAQ55021.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus Pel]
 gi|212995656|gb|EEB56296.1| carbamoyl-phosphate synthase, large subunit [Wolbachia endosymbiont
           of Culex quinquefasciatus JHB]
          Length = 1072

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 87/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+KV  +         D + S    +                PD    
Sbjct: 29  SGTQSCKVLKSEGYKVILVNSNPATIMTDPEFSDATYIEPVLPEIIEKIIIKEMPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAIKLADDGVLDKYNVELIGVNREAIKKAEDRELFRQSMDKIGLKYPKSII 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L  I  P +I+        G  +    +        +   +  +++ I++
Sbjct: 149 IKNQEQIKKALDYIGLPAIIRSSFTLGGAGSGIAYNKEEFFNIAESALKISPINEVQIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +         ++  +     
Sbjct: 209 SIMGWKEYEMEVIRDCKDNCIIVCSIENIDPMGVHTGDSITVAPALTLRDVEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   +++
Sbjct: 269 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVV 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327



 Score = 39.5 bits (90), Expect = 0.70,   Method: Composition-based stats.
 Identities = 30/176 (17%), Positives = 62/176 (35%), Gaps = 12/176 (6%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-LLQSSSWNHGDQLLIEQYVDGIELT 178
           +   +  P V++P        + +    QS     L Q+  + HG  LL +  V+ +E+ 
Sbjct: 707 NAEKVGFPLVVRPSYVLGGQSMSIRHDTQSFKEYVLNQTKIFEHGSLLLDKFLVNAVEVD 766

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
              + D         +   +    E    S +ST  +P      ++ KE++        A
Sbjct: 767 VDAVCDGKKVFIAAVMEHIE----EAGIHSGDSTCSIPTNTLSDEVIKEIELQTERIALA 822

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  +G+    F        V+ LE+N    +      P ++        +L   ++
Sbjct: 823 LKVKGLINIQFAVQESD--VYILEVN----LRASRTVPFISKVINIPVAKLATQVI 872


>gi|149926060|ref|ZP_01914323.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Limnobacter sp. MED105]
 gi|149825348|gb|EDM84559.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Limnobacter sp. MED105]
          Length = 662

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 81/284 (28%), Gaps = 31/284 (10%)

Query: 32  KVSQIDVDRSVGLVLA---------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S+   L              D      +G   E            I     
Sbjct: 49  EAYCIGPAPSLESYLRIDKLIETALKAGADAIHPG-YGFVSESPAFAQACAQAGITLVGP 107

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSS 138
              A A   DK  +K++    G+P  P            M +   I  P +IK L GG  
Sbjct: 108 TPQAIADMADKACAKEIAQQAGLPCIPGFSEPNASVSDLMAAAQRIGYPVMIKALAGGGG 167

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ ++  +      L  +              ++   +    +    L  T        
Sbjct: 168 RGMRLVMNESEFASQLHSAQLEAKNAFNDDRVMLEKAIINPRHIEIQVLADTHGHAVHLG 227

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+  +  ++   +   A    +A    G    +FL D  +   
Sbjct: 228 ERDCSVQRRHQKIVEEAPSPAVSAELRARMGEAALKLVRATSYVGAGTVEFLLDA-NGDF 286

Query: 258 FWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +++E+N +     G+T         A  G    +L+ W +  AS
Sbjct: 287 YFIEMNTRLQVEHGVTE--------AITGI---DLVQWQLRIAS 319


>gi|156742904|ref|YP_001433033.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156234232|gb|ABU59015.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 484

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 42/223 (18%), Positives = 81/223 (36%), Gaps = 18/223 (8%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+      +    + +         +  DK+++K++     VP  P I 
Sbjct: 79  NAIHPGWGFLAENADFAQKVIDAGLIWIGPQPDVIRMMGDKIQAKEIARRSNVPTIPGIE 138

Query: 113 VNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNH 162
                           I+ P +IK   GG   G++ +     IP+ L Q       ++  
Sbjct: 139 NVTSAGQITDWMRDQDIAFPIMIKAASGGGGKGMVRVDTPDQIPVALAQARSEAKKAFGD 198

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              L+ +    G  +   V+ D    V  +           L+  +       P+ +  D
Sbjct: 199 DTVLVEKYIEHGRHIEVQVVADEHRHVVHL-----FERECTLQRRNQKIIEEAPSTLEND 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +E+   A    + IG       +FLFDP ++  ++LE+N +
Sbjct: 254 LRQEICVTAARLMRRIGYTSAGTVEFLFDPATQSFYFLEVNTR 296


>gi|240850674|ref|YP_002972074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
 gi|240267797|gb|ACS51385.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bartonella
           grahamii as4aup]
          Length = 452

 Score = 56.4 bits (134), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 91/285 (31%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   +    D D                       S+  ++A  +  
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPARDSYLSIQQIIAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE  +I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHDITFIGPTATHIRIMGDKIEAKKTAKKLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +      + +   I  P +IK   GG   G+ V+  +Q   + L  + S     +
Sbjct: 133 GSDGAVTEESDALRTAREIGYPVIIKASAGGGGRGMKVVHSEQEFSIALKTTRSEAKAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V+GD + +   +            K     ++  L     
Sbjct: 193 GDDAVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSLQRRHQKVWEEATSPALNETER 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             I   V          +G RG    +FL+   + + +++E+N +
Sbjct: 253 KKIGSIVANACAQ----LGYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|326388682|ref|ZP_08210275.1| urea carboxylase [Novosphingobium nitrogenifigens DSM 19370]
 gi|326206933|gb|EGD57757.1| urea carboxylase [Novosphingobium nitrogenifigens DSM 19370]
          Length = 1210

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P ++K   GG  +G+ V   +  +       +    G+      +++     
Sbjct: 149 HEAARIGYPVILKATAGGGGIGMKVCADETELTEAFATVARLGAGNFGNGGVFLERYVAR 208

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +        +  V         L+  +       PA +  +     +   A      
Sbjct: 209 ARHIEVQVFGDGKGHVVALGERDCSLQRRNQKVVEETPAPLLPEGTRAALIDAAVRLTAG 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              R     +FL+D      F+LE+N +     G+T            G    +L+ WM+
Sbjct: 269 ASYRSAGTVEFLYDAERGDFFFLEVNTRLQVEHGVTE--------QVTGV---DLVEWMI 317

Query: 294 EDAS 297
             A+
Sbjct: 318 RGAA 321


>gi|78184411|ref|YP_376846.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9902]
 gi|78168705|gb|ABB25802.1| carbamoyl-phosphate synthase large subunit [Synechococcus sp.
           CC9902]
          Length = 1106

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACKALRAEGFEVVLVNSNPASIMTDPGMADRTYIEPLTPEVVTQVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLDRFGVELIGADLQAIQKAEDRLLFKQAMERIGVSVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASTLEEADAVGAEISSFPRIIRPAFTLGGSGGGIAYNPEEFAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDNGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|322822844|gb|EFZ28784.1| hypothetical protein TCSYLVIO_4975 [Trypanosoma cruzi]
          Length = 514

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/249 (16%), Positives = 82/249 (32%), Gaps = 17/249 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++     D+ +N   G   ED     V   LE  ++P+T +      LS  +M+ 
Sbjct: 60  RQIRQLVKSGAFDVFYNQCDGAIDEDKAGVEVVQALESFKVPFTGAISKYYELSKPEMKR 119

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-DLL 155
                +        +       +    +  P ++K + G SS+G+    K   +      
Sbjct: 120 MAHYCAVKTAPYAVLEAGDNVRELCAALHFPLIVKHISGYSSVGMDKSCKVYDMDALKER 179

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGD-------ASLDVTEIAVPKSDFYSYELKYSS 208
            +   +     L+E+++ G E T  V  D              +  P+ + + +      
Sbjct: 180 VARFIDQYQSALVEEFISGDEATVLVCADASQPGGIRVFPPVMVQFPEGEDFKHFHLKWE 239

Query: 209 LNSTHVLPAKIPLD--IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                +       D  +   +          +G  G  R D   D     V +LEIN   
Sbjct: 240 TYEGMIWRLVSEDDPALPDIIHIARTAFLHMMGGVGYGRVDVRIDREKNSVVFLEINPNC 299

Query: 267 GMTPVSIFP 275
           G+    ++P
Sbjct: 300 GI----MYP 304


>gi|7157929|gb|AAF37344.1|AF170805_1 D-alanine:D-alanine ligase [Enterococcus malodoratus]
          Length = 200

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  IKP   GSS+GI   +  + +   L ++  ++   
Sbjct: 44  LKNQWKENPKQIFDKCEGTLLYPMFIKPANMGSSVGISRAENREELQNALQEAYRYDSRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V +  FY Y  KY        +PA+IP ++ 
Sbjct: 104 LVEQGIDAREIEVAVLGNDDVRTTLPGEVVKEVAFYDYNAKYIDNTIQMAIPAEIPEEVM 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ +  A LA+  +G  G+SR DF       ++F  E
Sbjct: 164 QKARDYAKLAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|22095542|sp|Q9ZB63|CARY_BACST RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|3912935|gb|AAC78719.1| carbamoylphosphate synthetase heavy subunit [Geobacillus
           stearothermophilus]
          Length = 1043

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 42/312 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A ++ G++V  ++ +                      +V  ++A   PD    
Sbjct: 29  SGTQACIAFKEEGYRVILVNNNPATIMTDDVHADAVYFEPLTVEAVEAIIAKETPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCP 109
              G  G +   Q      L+   +    + I A        R+ + +       VP   
Sbjct: 89  TFGGQTGLNLAFQLHEAGVLKKYGVRLLGTPIEAIKRPRGGPRTFRALMHELGEPVPESE 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P +I+P       G  + +  +     + +  + +   Q LIE
Sbjct: 149 IVTSVEEAVAFAEQIGFPIIIRPAYTLGGTGGGIAENMEQFLALVEKGLNESPIHQCLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G               T I V   +       ++  +        +  + Y+ ++ 
Sbjct: 209 RSVAG-FKEIEYEVMRDQSNTCITVCNMENVDPVGIHTGDSIVVAPSQTLTDEEYQMLRS 267

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMA---- 278
            A     A+G  G     F  DP S++ + +E+N  P ++  S        +P  A    
Sbjct: 268 SAVKIISALGIIGGCNIQFALDPNSKQYYLIEVN--PRVSRSSALASKATGYPIAALPAK 325

Query: 279 AYAGYSFRELLL 290
              GY+  EL+ 
Sbjct: 326 LAVGYTLAELVN 337



 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 93/298 (31%), Gaps = 36/298 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+  G++   I+ +                      SV  V+   +      
Sbjct: 579 SVHSVF-ALQKEGYETVMINNNPETVSTDFAVADRLYFEPLTLESVLDVIEAEQIKHVIV 637

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + +      ++      D+                       
Sbjct: 638 QFGGQTAINLVKGLEEAGVPLLGVTYDMIDQLEDRDRFYQLLEELDIPHVPGLVANNAEE 697

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P       G+ ++  +  +   + Q         +LI+ Y+DG E
Sbjct: 698 LAAKAAEIGYPVLLRPSYVIGGCGMFIVHSEAQLAALIEQGELTY---PILIDAYLDGKE 754

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAH 235
               ++ D     T+I +P    +  +    S +S   LPA+    +   ++   A    
Sbjct: 755 AEADIVTD----GTDIVLPVIIEHVEKAGVHSGDSYAWLPAQTLTGEEKAKIIDYAGRIA 810

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + +G +GI    ++       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 811 KKLGFKGIMNIQYVI--ADGNVYVLEVNPRASRT----VPIVSKTTGVPLAQIATKLL 862


>gi|186682759|ref|YP_001865955.1| hypothetical protein Npun_F2451 [Nostoc punctiforme PCC 73102]
 gi|186465211|gb|ACC81012.1| protein of unknown function DUF201 [Nostoc punctiforme PCC 73102]
          Length = 392

 Score = 56.4 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/226 (12%), Positives = 70/226 (30%), Gaps = 14/226 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++ +   +L F      F      +  L                 + DK +   +
Sbjct: 77  DEVIRIIENQGINLIFPASEEGFKFVSKYRYKLSKFCRIVALPSEENLDAAFDKWKLHLL 136

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +    +P   ++L+    +++    + P ++KP+ G     I        +  +  Q+  
Sbjct: 137 LQKHNIPTPETVLL--KEIENISQFNYPVILKPVDGSGGKNIQKFDS---LEEENFQAIC 191

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               D  ++++YV G ++ C V+      +      +                       
Sbjct: 192 NYPNDVYIVQKYVPGHDIGCSVLCQDGQVLAYTIQQQLGLTEGFTPKIDKLKFVHD---- 247

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  V  +       +   GI+  D  ++  + ++  +EIN +
Sbjct: 248 -----SAVIDIVTKTMNVLKWSGIANLDLRYNSQTGQINVIEINPR 288


>gi|330808048|ref|YP_004352510.1| Urea carboxylase (Allophanate hydrolase subunit 2) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327376156|gb|AEA67506.1| Urea carboxylase (Allophanate hydrolase subunit 2) [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 1209

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 33/186 (17%), Positives = 64/186 (34%), Gaps = 24/186 (12%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GIEL 177
            +  P ++K   GG  +G+ V +    +             +      +++        L
Sbjct: 149 QLGYPVMLKSTAGGGGIGMRVCRSAADLSESFETVKRLGQNNFSDAGVFIEKYIERARHL 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD    V  + V          K         LP  +  ++       A    QA
Sbjct: 209 EVQVFGDGLGQVIALGVRDCSVQRRNQKVLEETPAPNLPEGMADELCA----AAIQLAQA 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  R     +F+FD  + + ++LE+N +     G+T      ++    G    +L+ WMV
Sbjct: 265 VNYRSAGTVEFVFDSDAGRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMV 313

Query: 294 EDASCL 299
           + A+  
Sbjct: 314 QLAAGD 319


>gi|84489713|ref|YP_447945.1| pyruvate carboxylase subunit A [Methanosphaera stadtmanae DSM 3091]
 gi|84373032|gb|ABC57302.1| PycA [Methanosphaera stadtmanae DSM 3091]
          Length = 496

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 79/235 (33%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D+ + + L     D      +G   E+ ++    +   I        A     DK+ 
Sbjct: 61  LDIDKIIDIAL-DTGADAIHPG-YGFLSENPVLGNKCDENNITLIGPRENAIQAMGDKIT 118

Query: 96  SKQVVSSCGVP----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SKQ++   GVP        I            I  P +IK   GG  +G+ V+ ++  + 
Sbjct: 119 SKQLMEKIGVPTVPGDKEGITDIEEAKKRAKEIGFPVIIKSSAGGGGIGMRVVYEEDELA 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  + +           Y++        +    L                ++      
Sbjct: 179 RAIESTQNLAQATFGDGTVYIEKYIEKPRHIEFQVLADNHGNTIHVCDRECSIQRRHQKL 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ + +   A  A +++        +F++   + + ++LE+N +
Sbjct: 239 IEEAPSPIMTEELRQRMGESAIKAAKSVDYNSAGTVEFMY--SNGEYYFLEMNTR 291


>gi|320582982|gb|EFW97199.1| urea amidolyase, putative [Pichia angusta DL-1]
          Length = 1248

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 79/234 (33%), Gaps = 10/234 (4%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +      D+     +G   E+    A L    I +      +      K  ++++ 
Sbjct: 69  EIIELATKHNIDVVIPG-YGFLSENSEFAAELAKNGILFAGPSSESVEQFGLKHLAREIA 127

Query: 101 SSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               VPV P    I  +   +   + I  P ++K   GG  +G+ V   +  +  +  + 
Sbjct: 128 IKADVPVVPGTSLISDSEELISECNKIGYPVILKATAGGGGMGLKVCYNEGELVANFAEV 187

Query: 158 SS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNS 211
           +S     +++    + +    G  +   + G+   DV        S    ++       S
Sbjct: 188 TSRGTSLFSNAGVFVEKYIEKGRHIEVQMFGNGLGDVVTYGERECSIQRRHQKVIEECPS 247

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V       ++ + +   A      I  +     +FL D  +   ++LE+N +
Sbjct: 248 PFVSDLGSKHNLRERLTSAAKRLASTIKYKSAGTVEFLVDDTTGDFYFLEVNTR 301


>gi|311894810|dbj|BAJ27218.1| putative carbamoyl-phosphate synthase large chain [Kitasatospora
           setae KM-6054]
          Length = 1102

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 88/308 (28%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          LE  ++    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISLHKAGTLEKYDVELIGADVEAINKGEDRELFKGVVEAVNAKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVETLGGYPVVVRPSFTMGGAGSGFAHDEEDLRRIAGQGLALSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  DP+  +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 ILRDIGIAVIREVGVDTGGCNIQFAVDPVDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|296131892|ref|YP_003639139.1| carbamoyl-phosphate synthase, large subunit [Thermincola sp. JR]
 gi|296030470|gb|ADG81238.1| carbamoyl-phosphate synthase, large subunit [Thermincola potens JR]
          Length = 1071

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 101/301 (33%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                      SV  ++   KPD     
Sbjct: 30  GTQACKALKEEGLEVVLVNSNPATIMTDGHIADKVYIEPLTWESVAKIIRLEKPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  V+     +L+   +    + +     + D+   K   +  +  +P    I
Sbjct: 90  LGGQTGLNIAVELAEKGVLQEEGVALLGTSLETIKRAEDREMFKELMLEINEPIPESVII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  +    +  P +++P       G  ++  +  +   + +  + +  +Q+L+E+ 
Sbjct: 150 SRLDEAFEFVKRVGYPVIVRPAYTLGGTGGGIVGNEAELTEIVTKGLNASLINQVLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S D         +       ++  +        +    Y+ ++  A
Sbjct: 210 VAGWKEIEYEVMRDSADNCITICNMENLDP-VGIHTGDSIVVAPSQTLSDKEYQMLRAAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  +P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRALKIEGGCNVQFALNPNSFEYVVIEVN--PRVSRSS--ALASKATGYPIAKMAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 84/271 (30%), Gaps = 19/271 (7%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP        G    +         + +  T    + 
Sbjct: 608 DKLYFEPLTF---EDVMNIIEKEKPYGVIVQFGGQTAINLAGDLSGAGVRVLGTPVAQID 664

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +K        +       +    +   +    +  P +++P        + ++  
Sbjct: 665 EAEDREKFERLLRTLAIPQSEGKTAFTVKEAQEIAEKLGYPVLVRPSYVLGGRAMEIVHN 724

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +   +  +   +    +L+++Y+ G E+    +GD    +     P    +      
Sbjct: 725 TGELLKYMETAVQVSPKHPVLVDKYIRGKEVEVDAIGDGENILI----PGIMEHIERAGV 780

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-- 263
            S +S    P +    +  ++V        +A+   G+    ++      +V+ LE+N  
Sbjct: 781 HSGDSIACYPVQTLTQEEQQKVIDYTTRIAKALKICGLINIQYVVGEE--EVYVLEVNPR 838

Query: 264 ---VQPGMTPVSIFPE---MAAYA-GYSFRE 287
                P ++ V+  P     A    G S RE
Sbjct: 839 ASRTVPVLSKVTGVPMVSVAARAMVGRSLRE 869


>gi|134045624|ref|YP_001097110.1| carbamoyl-phosphate synthase large subunit [Methanococcus
           maripaludis C5]
 gi|132663249|gb|ABO34895.1| carbamoyl-phosphate synthase large subunit [Methanococcus
           maripaludis C5]
          Length = 1081

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 28/294 (9%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G     ++ +                     + +  ++   +PD    
Sbjct: 28  SGSQACKSLKEEGIYTILVNSNPATIQTDTNIADKVYLEPLTPKILEKIIEKEQPDAILP 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+  +   ++ ++   D         +  +    +
Sbjct: 88  TMGGQTGLNLAMELSKRGILEKHGVELLGSTESVIETSEDRDLFNKAMKEINQPIAKSAA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P +++P       G  V   ++ +     +   ++   Q+LI+Q
Sbjct: 148 VHSVEEAIEATKELGYPAIVRPAFTLGGTGGGVANNEEELIEITKKGLKYSMIKQVLIDQ 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +       ++  +        +  + ++ ++  
Sbjct: 208 SLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMG-IHTGESIVTAPSQTLSDEFHQRLRDA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    + +   G     F  +P       +E+N  P ++  S     +   GY 
Sbjct: 267 SLQIIRHLKIEGGCNVQFAVNPEMTDYVVIEVN--PRVSRSS--ALASKATGYP 316



 Score = 42.6 bits (98), Expect = 0.069,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 88/295 (29%), Gaps = 35/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL++ G +   +         D D S  L    L  +   N++        L+  I++  
Sbjct: 592 ALKELGIEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFG 651

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-------------- 121
                +  +      ++ + +              I V       Q              
Sbjct: 652 GQTAINLAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAVSEEQALK 711

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + ++   + +   + ++   +    +LI+++  + +E+ 
Sbjct: 712 VVEKIGYPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVD 771

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  +  ++ +++          +
Sbjct: 772 VDAVCDGESVFIGAIMEHIEEAGIHSG---DSACVIPPQTLSKEVIEKIAEHTTKLALEL 828

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G+    +        V+ +E N +   T     P ++   G    ++    +
Sbjct: 829 GVIGLLNIQYAV--KDGVVYIIEANPRASRT----IPYVSKSVGVPLAKIATNAI 877


>gi|146306390|ref|YP_001186855.1| biotin carboxylation domain-containing protein [Pseudomonas
           mendocina ymp]
 gi|145574591|gb|ABP84123.1| biotin carboxylation domain protein [Pseudomonas mendocina ymp]
          Length = 1231

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG  +G+ V +    +             +      +++        +   
Sbjct: 152 YPVMLKSTAGGGGIGMRVCRSAAELSEAFEAVKRLGQNNFSDSGVFIEKYIQRARHLEVQ 211

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
                +  V         ++  +       PA      + + +   A    +A+  R   
Sbjct: 212 VFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPAGMNEALCAAAIKLAKAVSYRSAG 271

Query: 245 RSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E A+  
Sbjct: 272 TVEFVYDSEAERFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIELAAGD 319


>gi|78187505|ref|YP_375548.1| carbamoyl-phosphate synthase, medium subunit [Chlorobium luteolum
           DSM 273]
 gi|78167407|gb|ABB24505.1| carbamoyl-phosphate synthase large subunit [Chlorobium luteolum DSM
           273]
          Length = 492

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  +         D++              V  ++   KPD    
Sbjct: 29  SGTQACRALKEDGYRVILVNSNPATIMTDIELADATYIEPITPEYVQKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CPS 110
            + G    +  V      ILE   +    + + A   + ++      +   G+ +     
Sbjct: 89  TMGGQTALNTAVSLAESGILERNGVELIGAKLRAIRKAENRELFSDAMKKLGLEMAKGFF 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   D+   I  P +I+P       G    +        + +  + +   ++L+E+
Sbjct: 149 VRNEKEARDALEEIGLPIIIRPSFTLGGTGGGFAETKSDYYEAVRRGLAESPIGEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             +     
Sbjct: 209 CLFGWKEFELEVIRDLADNVIIVCSIENVDPMGVHTGDSITVAPAQTLTDRQYQELRDAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAIHPRTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|225850673|ref|YP_002730907.1| carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Persephonella marina EX-H1]
 gi|225645578|gb|ACO03764.1| carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Persephonella marina EX-H1]
          Length = 530

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 95/294 (32%), Gaps = 31/294 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL++ G++   +         D D              V  ++   KP        G
Sbjct: 29  CVWALKEEGYEAIMVNCNPETVSTDYDTSDKLFFEPIVYEDVINIIESEKPVGVVVQFGG 88

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                  V      + I  T    +  A   ++ R+  +      P           +  
Sbjct: 89  QTPLKLAVPLQNAGVNILGTSPDSIDIAEDRERFRNLVIKLGLKQPESGIARSKEEAIII 148

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P +++P        + ++     +   + ++        LLI+++  D IEL  
Sbjct: 149 SEKIGYPVLVRPSYVLGGRAMRLVYDTPELLNYIEEAVYVTEDKPLLIDRFLEDAIELDV 208

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    +    +   +           ++T + P  +   I  EV+R   +  +A+ 
Sbjct: 209 DAVSDGDDVLVGAIMEHIEEAGIHSG---DSATCIPPYTLSDQIMYEVKRQTRMLAKALN 265

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +G+    F       +V+ +E+N +   T     P ++   GY   ++   ++
Sbjct: 266 VKGLMNVQFAV--KDDEVYIIEVNPRASRT----VPFVSKAIGYPLAKIASKVI 313


>gi|302533367|ref|ZP_07285709.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. C]
 gi|302442262|gb|EFL14078.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. C]
          Length = 1102

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 90/308 (29%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRILKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       Q +LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISMHEQGVLEKYGVELIGANVEAINKGEDRDLFKGVVEAVKGKIGYGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIKGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +   + D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDTKDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAINPDDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|291457110|ref|ZP_06596500.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium breve DSM
           20213]
 gi|291380945|gb|EFE88463.1| acetyl-CoA carboxylase alpha chain [Bifidobacterium breve DSM
           20213]
          Length = 643

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 90  LIDILHKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 148

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 149 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 208

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     + +       +      D+  + T  +           K         
Sbjct: 209 DALQGGDLKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPF 268

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP     +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 269 LPE----EIVSTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 314


>gi|225868427|ref|YP_002744375.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           zooepidemicus]
 gi|259585684|sp|C0MEH1|CARB_STRS7 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225701703|emb|CAW99044.1| carbamoyl-phosphate synthase large chain [Streptococcus equi subsp.
           zooepidemicus]
          Length = 1058

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 30  GTQACLALKEEGYQVVLVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G                    +E+  T    +  A   D  +         +P    +
Sbjct: 90  LGGQTGLNLAMELSKAGILQELGVELLGTPLSAIDQAEDRDLFKQLMKELGEPIPESEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   ++++   +      +   Q LIE+ 
Sbjct: 150 TTVEGAISFANAIGYPVIVRPAFTLGGTGGGICTNEEALRDIVENGLKLSPVTQCLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 210 IAGFKEIEYEVMRDAADNALVVCSMENFDPVGIHTGDSIVFAPTQTLSDVE-NQLLRDAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRALKIEGGCNVQLALDPNSFSYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 96/293 (32%), Gaps = 30/293 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH----------GNFGE 64
            A++ AG++          +  D S+   L    L  +   NV+                
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEEVMNVIELEQPKGVILQFGGQT 638

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQH 122
              +   L    +P   + +     + D+   ++ +   G+P  P          +++  
Sbjct: 639 AINLAEQLTKAGVPILGTQLEDLDRAEDRKLFEKALKDLGIPQPPGKTATNEAEALEAAR 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +LI+ Y+ G E     +
Sbjct: 699 AIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAI 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++          + C G
Sbjct: 759 SDGQSVLIPGIMEHIERAG---VHSGDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +    F+    + +V+ +E+N +   T     P ++        ++   ++ D
Sbjct: 816 MMNIQFVI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLILD 862


>gi|298242076|ref|ZP_06965883.1| carbamoyl-phosphate synthase, large subunit [Ktedonobacter
           racemifer DSM 44963]
 gi|297555130|gb|EFH88994.1| carbamoyl-phosphate synthase, large subunit [Ktedonobacter
           racemifer DSM 44963]
          Length = 1071

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  ++   +PD    
Sbjct: 26  SGSQALKALHEEGISTVLINPNIATIQTSKQMADQVYFLPVTPFFVEKIIEKERPDGILL 85

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G       +LE   +    + + A  L+ D+    Q + S  +    S  
Sbjct: 86  SFGGQTALNCGIALHQSGVLEKYGVQILGTPVSAIILTEDREEFAQHLRSINISTPQSHV 145

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +   H +  P +++        G  +   +  +   +  +  +     L+ + 
Sbjct: 146 AETLDEALRIGHELGFPLMVRAGYALGGQGSGIAHSEDELRQIVDGALVFAP-QVLVEQY 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                E+   V+ DA  +   +   ++          S+         +    Y  ++  
Sbjct: 205 LHHFKEVEYEVVRDAFDNCITVCNMENMDPLGIHTGESVVIAPSQ--TLTNSEYHTLRAA 262

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++G  G     +  DP + + + +E+N +  ++  S     +   GY    +  
Sbjct: 263 AIKIVRSLGIVGECNVQYALDPQTSQYYVIEVNAR--LSRSS--ALASKATGYPLAYVAA 318

Query: 291 WM 292
            +
Sbjct: 319 KL 320



 Score = 39.5 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 30/249 (12%), Positives = 74/249 (29%), Gaps = 8/249 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +     P      + G    + +         I  T +  +  A   +K      
Sbjct: 616 ERIADICEFESPHGIIVSVGGQTPNNRVQALHRYGFSILGTSAENIDGAEDRNKFSYLLD 675

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   S             +  P +++P    S   + V    + +   + ++ +
Sbjct: 676 TLGIRQPEWASFSSLEELRSFVEGVGYPVLVRPSYVLSGSAMNVCYNQEQLERYVGEAVA 735

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +    + + ++         +   A     +  V  S+       +S   +  + P  I
Sbjct: 736 VSREYPVTVSRFFQ-KVKEIELDAIAQRGEVKAFV-ISEHVENAGVHSGDATIVLPPQTI 793

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    ++++     +A+   G     FL      +V+ +E N    +     FP ++ 
Sbjct: 794 NEETKARIEKVGRAIARALQITGPFNIQFL--AKDNEVYVIEAN----LRASRTFPFISK 847

Query: 280 YAGYSFREL 288
             G +  EL
Sbjct: 848 VTGVNMIEL 856


>gi|297562043|ref|YP_003681017.1| carbamoyl-phosphate synthase, large subunit [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
 gi|296846491|gb|ADH68511.1| carbamoyl-phosphate synthase, large subunit [Nocardiopsis
           dassonvillei subsp. dassonvillei DSM 43111]
          Length = 1100

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITTEMIEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         IL    +    + I A     D+   K +V   G     S +
Sbjct: 89  TLGGQTALNAAVALDEAGILAKYGVELIGANIEAIQSGEDRESFKGIVERIGGESARSRI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +S P V++P       G      +  +     Q  + +   ++L+E+
Sbjct: 149 CHTLEECLAAAEELSYPVVVRPSFTMGGAGSGFAHDESELRRIAGQGLALSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDTNDNVVVVCSIENLDPMGVHTGDSITVAPAMTLTDREYQKLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPTTGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|302385686|ref|YP_003821508.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           saccharolyticum WM1]
 gi|302196314|gb|ADL03885.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           saccharolyticum WM1]
          Length = 1066

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/317 (11%), Positives = 94/317 (29%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   +PD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADKVYIEPLTVEVVEQLILKERPDSVLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  +    +  L+  ++    +  L    + D+   +         V     +
Sbjct: 90  LGGQAGLNLAMELEDRGFLKEHKVRLIGTTALTIKKAEDRELFKETMEKIGEPVAPSDIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  + +        L      +   Q+L+E+ 
Sbjct: 150 EHVEDGLKVAEKIGYPVVLRPAYTLGGSGGGIAENPVQCREILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341



 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/289 (12%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 27  EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFGED 65
              G++   +         D D              V  ++   +PD A     G     
Sbjct: 583 RREGYETIIVNNNPETVSTDFDIADKLYFEPLTPEDVESIVDMERPDGAVVQFGGQTAIK 642

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
                +   + I  T +  + +A   +             P   ++        +   + 
Sbjct: 643 LTQALMKMGIPILGTAAEDVDAAEDRELFDKILEECRIPRPAGQTVFTAEEAKKAAGELG 702

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P       G+ +   DQ I   +   +       +L+++Y+ G E+    + D 
Sbjct: 703 YPVLVRPSYVLGGQGMQIAISDQDIDEFMGIINQIAQEHPILVDKYIPGKEIEVDAVCDG 762

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
              +    +   +         S +S  + PA+   + + +++        +A+  +G+ 
Sbjct: 763 EDILIPGIMEHMER----AGVHSGDSISIYPAQSISEAVKEKLVEYTKRLSRALHVKGMI 818

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              F+      +V+ +E+N +   T     P ++   G     L   ++
Sbjct: 819 NIQFIV--SGEEVYVIEVNPRSSRT----VPYISKVTGVPIVPLATRVI 861


>gi|298708784|emb|CBJ30744.1| Multifunctional pyrimidine synthesis protein [Ectocarpus
           siliculosus]
          Length = 1331

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 53/328 (16%), Positives = 104/328 (31%), Gaps = 48/328 (14%)

Query: 3   VLM---GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------- 39
           VLM   GG+S     E +    SG     AL++ G +V  ++ +                
Sbjct: 245 VLMLGSGGLSIGQAGEFD---YSGSQAIKALKEEGIEVVLVNPNIATVQTSKNLGGASPD 301

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILA 86
                      V  V+   KPD     + G      G +     I E   +    + I  
Sbjct: 302 RTYFLPVTPEIVESVIIKEKPDGVLVSMGGQTALNCGVELHNAGIFEKHNVRVLGTQIPV 361

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              + D+    Q +      +  SI        + +   I  P +I+       LG    
Sbjct: 362 IMATEDRDVFAQKLREINENLAQSICASTMDEALAAAEKIGYPVLIRAAYALGGLGSGFA 421

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           + +      L  S  + + DQL+++Q + G                 I V   + +    
Sbjct: 422 ENEAEFR--LQASKGFAYSDQLIVDQDLRGW-KEVEYEVVRDNRDNCITVCNMENFDPLG 478

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            ++  +        +    Y +++R A    + +G  G     +  +P S +   +E+N 
Sbjct: 479 VHTGDSIVIAPSQTLSNREYFQLRRTALKVVRHLGVVGECNIQYALNPDSEEYCIIEVNA 538

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  ++  S     +   GY    +   +
Sbjct: 539 R--LSRSS--ALASKATGYPLAYVAAKL 562


>gi|197106049|ref|YP_002131426.1| carbamoyl-phosphate synthase, large subunit [Phenylobacterium
           zucineum HLK1]
 gi|196479469|gb|ACG78997.1| carbamoyl-phosphate synthase, large subunit [Phenylobacterium
           zucineum HLK1]
          Length = 1096

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G+++  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGVQACKALRAEGYRIVLVNSNPATIMTDPEIADATYIEPITPEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +         +L    +    +       + D+ + +  + + G+    S +
Sbjct: 89  TMGGQTALNTALALERTGVLAKYGVEMIGARADVIDKAEDRQKFRDAMDAIGLESPRSQV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +        L     P +I+P    +  G  +    +     + +    +   ++LIE+
Sbjct: 149 AHTLEEAMAGLEQVGLPAIIRPSFTLAGTGGGIAYNVEEFKEIVERGLDLSPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDRADNCIIVCSIENVDPMGVHTGDSITVAPALTLADKEYQRMRAAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVETGGSNVQFAVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/164 (15%), Positives = 59/164 (35%), Gaps = 8/164 (4%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           H +  P VI+P        + +++ D+ +   +  +   +    +LI+QY+        V
Sbjct: 717 HKVGYPVVIRPSYVLGGRAMEIVRDDEQLERYITTAVQVSGDSPVLIDQYLS-RATEVDV 775

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                           +       +S  ++  + P  +  +   E++R      +A+  R
Sbjct: 776 DALCDDAGQVFVAGVMEHIEEAGVHSGDSACSLPPYSLKAETIAELKRQTEAMARALSVR 835

Query: 242 GISRSDFLFDPLSR---KVFWLEINVQPGMTPVSIFPEMAAYAG 282
           G+    F  +       +++ LE+N +   T     P +A   G
Sbjct: 836 GLMNVQFAIEDAQGPEPRIYVLEVNPRASRT----VPFVAKTIG 875


>gi|90407817|ref|ZP_01215994.1| 5'-phosphoribosylglycinamide transformylase [Psychromonas sp.
           CNPT3]
 gi|90311082|gb|EAS39190.1| 5'-phosphoribosylglycinamide transformylase [Psychromonas sp.
           CNPT3]
          Length = 396

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 48/285 (16%), Positives = 88/285 (30%), Gaps = 35/285 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS-------------------- 41
           A+L+G  S E    L  GK  A  L+  G +V   D   +                    
Sbjct: 17  ALLLG--SGE----L--GKEIAIELQRFGIEVIAADSYENAPAMQIAHHHYVVSMLDAAK 68

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++ H KPD     +     +  +         IP   +  L       +    + + 
Sbjct: 69  LEEIIRHEKPDFIIPEVEAIATDTLVQLEQQGFNVIPSARATKLTMDREGIRRLVAEQLL 128

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                    +      +D+   I  P VIKP+   S  G  VI+    +        S  
Sbjct: 129 IPT-TPYIFVDNKAQFIDAIDNIGLPCVIKPVMSSSGKGQSVIRTHADVDNA--WQHSQE 185

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        ++G       +   ++   +     +     + K     S    P K+P 
Sbjct: 186 AGRSGAGRVILEGFIDFDYEITLLTICAVDGIHFCAPIGHRQEKGDYRESWQ--PQKMPE 243

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              K+ Q +A      +G  G+   +F        V++ E++ +P
Sbjct: 244 QALKKAQDIARKVVTELGGYGLFGMEFFI--KGEHVYFNEVSPRP 286


>gi|83309801|ref|YP_420065.1| carbamoyl phosphate synthase large subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82944642|dbj|BAE49506.1| Carbamoylphosphate synthase large subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 1085

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+D G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGVQACKALKDEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADMGILEKFGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLESPKSRM 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L     P +I+P    +  G  +          +    + +   ++L+E+
Sbjct: 149 VKTLQEAREALDFVGLPAIIRPSFTLAGTGGGIAYNVAEYEHIVSGGLAASPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPKDGRMTVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 61/172 (35%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + ++   +++   ++++   +  D +LI+ Y  D IE+  
Sbjct: 714 AEKIGYPVVIRPSFVLGGRAMQIVYDHEALERYMVEAVKVSGDDPVLIDYYLKDAIEVDV 773

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +      E++R      +A+ 
Sbjct: 774 DALCDGNQVYVAGIMQHIEEAGIHSG---DSACSLPPYSLDKATIAELERQTAAMAKALN 830

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    +        ++ LE+N +   T     P +A   G    ++   
Sbjct: 831 VVGLMNCQYAI--KDGDIYILEVNPRASRT----VPFVAKATGVPIAKIAAR 876


>gi|83952263|ref|ZP_00960995.1| pyruvate carboxylase [Roseovarius nubinhibens ISM]
 gi|83837269|gb|EAP76566.1| pyruvate carboxylase [Roseovarius nubinhibens ISM]
          Length = 1145

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  I     +   +L+            E Y++ + L   
Sbjct: 151 AEEVGYPLMLKASWGGGGRGMRPINGPDELVEKVLEGRREAEAAFGNGEGYLEKMILRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      +         ++  +       PA    +    E+  L +   + + 
Sbjct: 211 HVEVQILGDKHGNMYHLFERDCSVQRRNQKVVERAPAPYLSEAQRAEICELGYKICKHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  S + +++E+N +
Sbjct: 271 YECAGTVEFLMDMDSGEFYFIEVNPR 296


>gi|330998095|ref|ZP_08321923.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569184|gb|EGG50975.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Paraprevotella
           xylaniphila YIT 11841]
          Length = 503

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 82/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++DR +  V A  K D      +G   E+       E   I +            DK+ 
Sbjct: 61  LNIDR-IIEVAAKCKADAVHPG-YGFLSENAEFVRRCEAAGIIFIGPTADTMEAMGDKIA 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++Q + + GVPV P         D    I      P ++K   GG   G+ +I  +  + 
Sbjct: 119 ARQRMMAAGVPVVPGTAEPLKDADEAVRICKEIGFPVMLKASMGGGGKGMRLIHSEDEVK 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L      V         ++  +   
Sbjct: 179 EAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDAHGNVVHLFDRECSVQRRNQKI 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     ++ +E+   A  A +A+  RG    +FL D   R  ++LE+N +
Sbjct: 239 VEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHFYFLEMNTR 292


>gi|325181583|emb|CCA16033.1| PREDICTED: similar to Carbamoylphosphate synthase p [Albugo
           laibachii Nc14]
          Length = 1543

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 40/314 (12%), Positives = 99/314 (31%), Gaps = 48/314 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD--------------------------RSVGLVLAHLKP 51
           SG     AL++   +   I+ +                            V  V+   +P
Sbjct: 475 SGSQAIKALKEENIETILINPNIASVQTNIDKSSEAQASNVYYLPVTTDFVEQVIKRERP 534

Query: 52  DLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GV 105
           D     + G      G +   + IL+   +    + I     + D+ +    +      +
Sbjct: 535 DGILISMGGQTALNCGVELHKRGILQKYGVRVLGTQIDVIDATEDREKFNTKLKEIGEKI 594

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               ++      + + H I  P +I+       LG  + + ++ +    + + +++   Q
Sbjct: 595 AESYAVNSVEDAVVAAHKIKFPVMIRSAFALGGLGSGICETEKDLRS--MATKAFSGSPQ 652

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ + G                 + V   + +     ++  +        +    Y 
Sbjct: 653 ILVEKSMKGW-KEVEYEVVRDTANNCLTVCNMENFDPLGIHTGESIVIAPSQTLSNREYH 711

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMA 278
            ++  A    + +G  G     +  +P S +   +E+N +  ++  S        +P   
Sbjct: 712 MLRETAINVVRHLGIIGECNIQYALNPHSEEYCIIEVNAR--LSRSSALASKATGYPLAF 769

Query: 279 AYA----GYSFREL 288
             A    G +  EL
Sbjct: 770 VAAKLALGINLPEL 783


>gi|73538708|ref|YP_299075.1| allophanate hydrolase subunit 2 [Ralstonia eutropha JMP134]
 gi|72122045|gb|AAZ64231.1| Allophanate hydrolase subunit 2 [Ralstonia eutropha JMP134]
          Length = 1233

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +  +             +      +++       
Sbjct: 163 AARIGYPVMLKSSAGGGGIGMRLVRSEAELVPAFEAVERLARANFKDAGLFLEKFVERAR 222

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +           V          +  +       PA       ++     A    +A+ 
Sbjct: 223 HIEVQLFGDGHGNVVALGERDCSAQRRNQKVIEETPAPGLDTTTRDALMAAAVRLGRAVS 282

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+ D  +   ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 283 YRSAGTVEFVLDADTGAFYFLEVNTRLQVEHGVTE--------QVTGV---DLVAWMVRL 331

Query: 296 A 296
           A
Sbjct: 332 A 332


>gi|262368319|ref|ZP_06061648.1| urea carboxylase [Acinetobacter johnsonii SH046]
 gi|262315997|gb|EEY97035.1| urea carboxylase [Acinetobacter johnsonii SH046]
          Length = 1201

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 87/308 (28%), Gaps = 47/308 (15%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
               L++ G +   +  +     +   L  +  F                          
Sbjct: 17  VIRTLKNLGIQSVAVYSEADRDSLHVTLADEAVFIGDSPASQSYLNIEKILQVAKEVGAE 76

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         +L E             + +  L           +   +P    
Sbjct: 77  AIHPGYGFLSENAEFCDLCESQGIVFLGPNSAQMCSFGLKHTARELAIQANVPLLPGSQL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I  P ++K   GG  +G+ ++  +  +       S     +      
Sbjct: 137 LADEAEALVEANRIGYPVMLKSTAGGGGIGMRLVWNEAELKDAYATVSYLAQANFKDAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
           Y++        +        +  V         ++  +       PA     +    +Q 
Sbjct: 197 YLEKFVENARHIEVQIFGDGQGLVLALGERDCSVQRRNQKVIEETPAPHLNDEQRAYIQG 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A    Q++  R     +F+ D  +++ ++LE+N +     G+T            G   
Sbjct: 257 VAIQLMQSVNYRSAGTVEFVMDTDTQQFYFLEVNTRLQVEHGVTE--------QVFGV-- 306

Query: 286 RELLLWMV 293
            +L+ WMV
Sbjct: 307 -DLVEWMV 313


>gi|255020196|ref|ZP_05292265.1| Biotin carboxylase of acetyl-CoA carboxylase [Acidithiobacillus
           caldus ATCC 51756]
 gi|254970338|gb|EET27831.1| Biotin carboxylase of acetyl-CoA carboxylase [Acidithiobacillus
           caldus ATCC 51756]
          Length = 448

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 34/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLV--------LAHLKPDLAFN------------ 56
                 A  + G +   +  + DR +  V        +     D ++             
Sbjct: 14  ALRVQRACRELGIRTVAVHSEPDRDLMHVKLADESVCIGPAPSDRSYLNIPAVIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFAFIGPRPETIRLMGDKIAAKQAMLKAGVPCVPG 133

Query: 111 ILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V+  +  +   +  + +      
Sbjct: 134 SDGPLPDAPEAIKALAREIGYPVILKAAGGGGGRGMRVVHTEAHLMNAVNLTRAEAARAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++    T   +    L                 +          PA  I  +  
Sbjct: 194 GNPVLYMEKFLETPRHIEFQVLCDAHGHCIHLGERDCSTQRRHQKVIEEAPAPGIHPEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + +G RG    +FL++P+S   +++E+N +
Sbjct: 254 ERIGAAVVQACELMGYRGAGTIEFLYEPVSETFYFIEMNTR 294


>gi|317483501|ref|ZP_07942487.1| carbamoyl-phosphate synthase subunit L [Bifidobacterium sp.
           12_1_47BFAA]
 gi|316915052|gb|EFV36488.1| carbamoyl-phosphate synthase subunit L [Bifidobacterium sp.
           12_1_47BFAA]
          Length = 654

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 39/229 (17%), Positives = 77/229 (33%), Gaps = 9/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILHKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P +      +       H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRMLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   GD  L E +++        +   S   +             L+  +       PA
Sbjct: 188 DALQGGD--LKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPA 245

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 246 PFLSEEIISTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|49474255|ref|YP_032297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           quintana str. Toulouse]
 gi|49239759|emb|CAF26144.1| biotin carboxylase [Bartonella quintana str. Toulouse]
          Length = 452

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 92/285 (32%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   I    D D                       S+  ++A  +  
Sbjct: 14  ALRVLRACKELGIKTVAIHSTADADAMHVRLADESVCIGPPPARDSYLSIQQIIAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE  +I +         +  +K+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHDITFIGPTAAHIRIMGNKIEAKKTAKKLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +      + +   I  P +IK   GG   G+ V++ ++   + L  + S     +
Sbjct: 133 GSDGPVTEEAEALRTASEIGYPVIIKASAGGGGRGMKVVRSEKEFAIALETTRSEAAAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           +     + +       +   V+GD +     +            K     ++  L     
Sbjct: 193 SDDSVYIEKYLEKPRHIEIQVIGDGTGSAVHLGERDCSLQRRHQKIWEEATSPALNETER 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             I   V          +G RG    +FL+   + + +++E+N +
Sbjct: 253 KKIGDIVANACAQ----LGYRGAGTVEFLY--ENGEFYFIEMNTR 291


>gi|227832378|ref|YP_002834085.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
 gi|262183761|ref|ZP_06043182.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
 gi|227453394|gb|ACP32147.1| pyruvate carboxylase [Corynebacterium aurimucosum ATCC 700975]
          Length = 1143

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E   +        I +         L+ DK  
Sbjct: 69  LDIDEVIRAA-KKSGADAIYPG-YGFLSERADLARACRDNGIKFIGPTPETLDLTGDKAA 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P       +             + P  +K + GG   G+  I+ +  +  
Sbjct: 127 AVAAAQEAGLPTLKDSKPSTDVDKLAEYAKDFNFPVFVKAVAGGGGRGMRFIENEAELKT 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 187 KCAEASREAEAAFGDGNVYLETAVIRPQHIEVQILADSQGNVMHLYERDCSVQRRHQKVV 246

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     ++   +   A    + I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAPTLDPELRDRICADAVKFCEHINYEGAGTVEFLVDEKGNHV-FIEMNPR 299


>gi|168335071|ref|ZP_02693182.1| carbamoyl phosphate synthase large subunit [Epulopiscium sp. 'N.t.
           morphotype B']
          Length = 1075

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 37/297 (12%), Positives = 86/297 (28%), Gaps = 31/297 (10%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           S  A   AL+  G++   I+                      D  V  +    KP     
Sbjct: 583 SVHAIM-ALKKCGYETIIINNNPETVSTDFNTSDKLYFEPLTDEDVYHIFLKEKPKGVIL 641

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G              + +  T    +  A   +K            P   +I     
Sbjct: 642 QFGGQTAIKLANFCEKMNIPVLGTQPRQVDEAEDREKFDEVLEKLHIKRPKGKAIWNVAE 701

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     +  P +++P       G+ +  ++  +   L  +   +  + +LI++Y+ G E
Sbjct: 702 GLAVASELDYPVLVRPSYVLGGQGMEITFEETELQRYLENAFDRDKENPVLIDRYLMGRE 761

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +           ++T      I   I +++     L   
Sbjct: 762 IEVDAICDGEDILIPGIMEHLERAGIHSG---DSTTMYPSVNISAAIKEKIISCTKLLAT 818

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +   G+    ++       ++ +E+N +   T     P ++        EL    +
Sbjct: 819 ELKVLGMINIQYI--DYKDDLYIIEVNPRSSRT----VPYISKVTEVPIIELATKTI 869



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 95/318 (29%), Gaps = 40/318 (12%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFN 56
           SG     A+ + G +V  ++        D+               +  V+A  +PD    
Sbjct: 29  SGTQACQAIREEGIEVILVNSNPATIMTDKEVADKIYIEPLNAAFIEKVIAKERPDSLLA 88

Query: 57  VLHGNFGEDGLVQ------AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +  V+           + +  T    +      +  R      +  V    +
Sbjct: 89  GVGGQTGLNLAVELXDLGILEKYNVRVIGTQISAIKEGEDRESFRKLMNRINQPVIESKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P V++P       G  + + ++ +          +  +Q+LIE+
Sbjct: 149 VETVADAITFAREIGYPVVVRPAYTLGGTGGGIAETEEELSEIASSGIHLSRVNQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   +           +       ++  +        +    Y+ ++R 
Sbjct: 209 CIKGWKEIEYEVMRDNYGTVITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKEYQMLRRA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +         RG         P S +   +EIN  P ++  S     +   GY    +  
Sbjct: 268 SLDIISECDIRGGCNVQIALHPDSFEYAIIEIN--PRVSRSS--ALASKATGYPIARVSA 323

Query: 291 WM--------VEDASCLR 300
            +        +E+A   +
Sbjct: 324 KIALGYGLDEIENAVTGK 341


>gi|220928068|ref|YP_002504977.1| carbamoyl phosphate synthase large subunit [Clostridium
           cellulolyticum H10]
 gi|219998396|gb|ACL74997.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           cellulolyticum H10]
          Length = 1071

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G +V  ++        D ++                ++   KPD     
Sbjct: 30  GTQACQALKEEGIEVVLVNSNPATIMTDTNIADKVYIEPLKAEVVKNIIRCEKPDSILPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           L G  G +  ++      L+   +    +   A  ++ D+   K  +   G P   S  +
Sbjct: 90  LGGQTGLNLAMELAESGFLQEQGVKLLGTATEAIKMAEDRQDFKDTMERIGEPCIASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  ++  ++ +          +   Q+LIE+ 
Sbjct: 150 TTIEDAIAFAREIDYPVIVRPAYTLGGTGGGIVNNEEELREVGENGLRLSRVHQVLIEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 ISGWKEIEYEVIRDGKGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLADKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G +G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIISALGIQGGCNVQYALHPTSFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 92/289 (31%), Gaps = 32/289 (11%)

Query: 25  ALEDAGFKVSQ-----------IDVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++               D              V  ++   KP  A     G   
Sbjct: 583 ALKELGYETIIANNNPETVSTDFDTADRLYFEPLTAEDVANIVEAEKPKGAIVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T +  + +A   +K       +    P   +I      + + + 
Sbjct: 643 IKLTKALDDMGVKIFGTEAKNVDAAEDREKFDEILEKTDIPRPQGKTIFTLDEAIAAANE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +LI++Y+ G E+    + 
Sbjct: 703 LGYPVLVRPSYVLGGQGMEIAYNDKDVKEFMEIINRTVQEHPILIDKYMMGKEIEVDAIC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P +     + + V        +A+   G
Sbjct: 763 DGEEILI----PGIMEHLERAGVHSGDSISVYPTQTLSDKVKEVVVDYTIKLAKALNVIG 818

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    ++    + +V+ +E+N +   T     P ++   G     L   
Sbjct: 819 MVNIQYVL--YNNQVYVIEVNPRSSRT----VPYISKVTGIPMVNLATK 861


>gi|24215436|ref|NP_712917.1| acetyl-CoA carboxylase biotin carboxylase subunit [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45657159|ref|YP_001245.1| acetyl-CoA carboxylase subunit alpha [Leptospira interrogans
           serovar Copenhageni str. Fiocruz L1-130]
 gi|24196559|gb|AAN49935.1| acetyl-CoA carboxylase biotin carboxylase subunit [Leptospira
           interrogans serovar Lai str. 56601]
 gi|45600397|gb|AAS69882.1| acetyl-CoA carboxylase alpha chain [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 487

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 45/234 (19%), Positives = 78/234 (33%), Gaps = 15/234 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +   K D      +G   E       LE   + +      +  L  DK+ S+  +
Sbjct: 65  NILEAIKKTKTDAVHPG-YGFLSEKSEFAKALEKENVLFLGPSPESMELMGDKINSRIKM 123

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P                  I  P +IK   GG   G+  + K +     L  
Sbjct: 124 EASGVPVVPGYNGQNQDPKILQKEAEKIGYPLMIKATAGGGGKGMKRVYKSEEFLFALES 183

Query: 157 SSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +          G   L +       +   V GD   +V  +   +        K    + 
Sbjct: 184 AQREAQKAFGDGTVFLEKYVETPRHIEVQVFGDKHGNVMHLFERECSIQRRHQKVIEESP 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              LP  +  +I +    +A  A Q+IG  G    +F+      K ++LE+N +
Sbjct: 244 APNLPISLRDEICR----VAVKAAQSIGYVGAGTVEFIL-GKDNKFYFLEMNTR 292


>gi|159906028|ref|YP_001549690.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           maripaludis C6]
 gi|159887521|gb|ABX02458.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           maripaludis C6]
          Length = 1081

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G     ++ +                     + +  ++   +PD    
Sbjct: 28  SGSQACKSLKEEGIYTILVNSNPATIQTDTNIADKVYLEPLTPKILEKIIEKEQPDAILP 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+  +   ++ ++   D         +  +    +
Sbjct: 88  TMGGQTGLNLAMELSKRGILEKHGVELLGSTESVIETSEDRDLFNKAMEEINQPIAKSAA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++P       G  +   ++ +     +   ++   Q+LI+Q
Sbjct: 148 VHSVEEAIKATEELGYPAIVRPAFTLGGTGGGIATNEEELIEITKKGLKYSMIRQVLIDQ 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +       ++  +        +  + +++++  
Sbjct: 208 SLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMG-IHTGESIVTAPSQTLSDEFHQKLRDA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    + +   G     F  +P       +E+N  P ++  S     +   GY 
Sbjct: 267 SLQIIRHLKIEGGCNVQFAVNPEMTDYVVIEVN--PRVSRSS--ALASKATGYP 316



 Score = 42.9 bits (99), Expect = 0.050,   Method: Composition-based stats.
 Identities = 31/295 (10%), Positives = 89/295 (30%), Gaps = 35/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--------- 66
           AL++ G +   +         D D S  L    L  +   N++                 
Sbjct: 592 ALKELGIEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFG 651

Query: 67  -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 +   L    +    +   +  L+ D+ +   V+    +P              +
Sbjct: 652 GQTAINLAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALK 711

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + ++   + +   + ++   +    +LI+++  + IE+ 
Sbjct: 712 VVEKIGYPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDRFLEEAIEVD 771

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  +  ++ +++          +
Sbjct: 772 VDAVCDGESVFIGAIMEHIEEAGIHSG---DSACVIPPQTLSKEVIEKIAEHTTKLALEL 828

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G+    +        V+ +E N +   T     P ++   G    ++    +
Sbjct: 829 GVIGLLNIQYAV--KDGVVYIIEANPRASRT----IPYVSKSVGVPLAKIATNAI 877


>gi|150402182|ref|YP_001329476.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           maripaludis C7]
 gi|150033212|gb|ABR65325.1| carbamoyl-phosphate synthase, large subunit [Methanococcus
           maripaludis C7]
          Length = 1081

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/294 (9%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G     ++ +                     + +  ++   +PD    
Sbjct: 28  SGSQACKSLKEEGIYTILVNSNPATIQTDTNIADKVYLEPLTPKILEKIIEKEQPDAILP 87

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    +E+  +   ++ ++   D         +  +    +
Sbjct: 88  TMGGQTGLNLAMELSKRGILEKHGVELLGSTESVIETSEDRDLFNKAMEEINQPIAKSAA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++P       G  +   ++ +     +   ++   Q+LI+Q
Sbjct: 148 VHSVEEAIKATEELGYPAIVRPAFTLGGTGGGIATNEEELIEITKKGLKYSMIRQVLIDQ 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +       ++  +        +  + +++++  
Sbjct: 208 SLLGWKEYEYEVMRDKNDTCIVVCNMENIDPMG-IHTGESIVTAPSQTLSDEFHQKLRDA 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +    + +   G     F  +P       +E+N  P ++  S     +   GY 
Sbjct: 267 SLQIIRHLKIEGGCNVQFAVNPEMTDYVVIEVN--PRVSRSS--ALASKATGYP 316



 Score = 42.6 bits (98), Expect = 0.079,   Method: Composition-based stats.
 Identities = 30/295 (10%), Positives = 89/295 (30%), Gaps = 35/295 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDG--------- 66
           AL++ G +   +         D D S  L    L  +   N++                 
Sbjct: 592 ALKELGIEAIIVNNNPETVSTDYDTSDKLYFEPLVYEEIMNIIENENKNGQLLGVIVQFG 651

Query: 67  -----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
                 +   L    +    +   +  L+ D+ +   V+    +P              +
Sbjct: 652 GQTAINLAMKLYNSGVNILGTSPQSIDLAEDRDQFIHVLEKLKIPQADGATAFSEEQALK 711

Query: 122 --HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +++P        + ++   + +   + ++   +    +LI+++  + +E+ 
Sbjct: 712 VVEKIGFPALVRPSYVLGGRAMQIVYNTEDLKDYMREAVKVSSDHPILIDKFLEEAVEVD 771

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D         +   +           ++  + P  +  ++ +++          +
Sbjct: 772 VDAVCDGESVFIGAIMEHIEEAGIHSG---DSACVIPPQTLSKEVIEKIAEHTTKLALEL 828

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           G  G+    +        V+ +E N +   T     P ++   G    ++    +
Sbjct: 829 GVIGLLNIQYAV--KDGVVYIIEANPRASRT----IPYVSKSVGVPLAKIATNAI 877


>gi|126735356|ref|ZP_01751102.1| pyruvate carboxylase [Roseobacter sp. CCS2]
 gi|126715911|gb|EBA12776.1| pyruvate carboxylase [Roseobacter sp. CCS2]
          Length = 1147

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 50/153 (32%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        +  P ++K   GG   G+  I  +  +   +L+            E Y++
Sbjct: 144 MKAIKKEAAEVGYPLMLKASWGGGGRGMRPIMSEDELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + +    +    L  +   +         ++  +       PA        +++  L  
Sbjct: 204 KMIMRARHVEVQILGDSHGQIYHLWERDCSVQRRNQKVVERAPAPYLSGTQREQLCNLGK 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              Q +        +FL D  S + +++E+N +
Sbjct: 264 KICQHVNYECAGTVEFLMDMDSGEFYFIEVNPR 296


>gi|1255021|gb|AAB17901.1| D-alanine:D-alanine ligase [Enterococcus saccharolyticus]
          Length = 200

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 36/159 (22%), Positives = 70/159 (44%), Gaps = 5/159 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+GI   +    +   L ++    + +
Sbjct: 44  LKNQWKENPKQIFEQCEGSLRYPMFVKPANMGSSVGISKAENRVELQNALEEAY--KYDN 101

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTE--IAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           + +IEQ ++  E+   ++G+  +  T     V    FY Y  KY   +    +PA++P +
Sbjct: 102 RAVIEQGIEAREIEVAILGNEDVRTTMAGEIVKDVAFYDYNSKYIDNSIVMQIPAQVPDE 161

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           + ++ Q  A LA+  +G  G+SR DF       ++F  E
Sbjct: 162 VQEKAQEYAKLAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|290961855|ref|YP_003493037.1| carbamoylphosphate synthetase large chain [Streptomyces scabiei
           87.22]
 gi|260651381|emb|CBG74503.1| carbamoylphosphate synthetase large chain [Streptomyces scabiei
           87.22]
          Length = 1102

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/308 (12%), Positives = 86/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDTLLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +          LE   +    + + A     D+   K VV +    +     
Sbjct: 89  TLGGQTALNTAISLHEAGTLEKYGVELIGANVEAINKGEDRDLFKDVVEAVRAKIGHGES 148

Query: 113 VNRFTMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVIKGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  +P   +V  +E+N  P ++  S     +   G+ 
Sbjct: 269 VLRDVGIAIIREVGVDTGGCNIQFAVNPEDGRVIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|284032243|ref|YP_003382174.1| carbamoyl-phosphate synthase large subunit [Kribbella flavida DSM
           17836]
 gi|283811536|gb|ADB33375.1| carbamoyl-phosphate synthase, large subunit [Kribbella flavida DSM
           17836]
          Length = 1104

 Score = 56.0 bits (133), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 84/298 (28%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ GF+V  ++ +                       V  V+   +PD+   
Sbjct: 29  SGTQACRVLKEEGFRVVLVNSNPATIMTDPEFADATYVEPITPEFVEKVIEKERPDVLLA 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            L G         +     L +      G    A+   + R         +    +  V 
Sbjct: 89  TLGGQTALNAAIALHDNGVLDKYGVELIGASVDAIQRGENRESFKAIVETLGAEVARSVV 148

Query: 115 RFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
             TMD        +  P V++P      +G  +   +  +          +   ++LIE+
Sbjct: 149 CHTMDDVLGAAAEMGYPLVVRPSFTMGGVGSGMAYNELDLRRIAGAGLVASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SIVGWKEYELEVMRDKADNVVIVCSIENVDPMGVHTGDSVTVAPAMTLTDREYQTMRDLA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IGIIREVGVDTGGCNIQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|126740129|ref|ZP_01755819.1| pyruvate carboxylase [Roseobacter sp. SK209-2-6]
 gi|126718948|gb|EBA15660.1| pyruvate carboxylase [Roseobacter sp. SK209-2-6]
          Length = 1147

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 45/153 (29%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I+ +  +   +L+            E Y++
Sbjct: 144 MDAIRKEAAEIGYPLMLKASWGGGGRGMRPIQGESELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L      +         ++  +       PA    +  +        
Sbjct: 204 KMITRARHVEVQILGDKHGEIYHLFERDCSVQRRNQKVVERAPAPYLSEEQRAEICDLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              Q +        +FL D    K +++E+N +
Sbjct: 264 KICQHVNYECAGTVEFLMDMNDGKFYFIEVNPR 296


>gi|227496168|ref|ZP_03926474.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
 gi|226834282|gb|EEH66665.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Actinomyces
           urogenitalis DSM 15434]
          Length = 1107

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D D              +  ++   +PD    
Sbjct: 29  SGTQACRVLRGEGIRVILVNSNPATIMTDPDIADATYVEPITTEVLTTIIERERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +      +L+  ++    +   A     D+   K+VV  CG  V  S +
Sbjct: 89  TLGGQTALNAAMSLVEAGVLDKYDVELIGANAAAINAGEDREEFKKVVERCGAEVARSCI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P V++P      LG  V    + +     Q  + +   ++L+E
Sbjct: 149 AHTMAECHAGVEALGGYPVVVRPSFTMGGLGSGVAYDAEDLERIAGQGLAASRTTEVLLE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   +     +     +      +          ++ +    
Sbjct: 209 ESILGWKEYELELMRDKADNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDRELQRLRDI 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G     F  DP + +V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 GIAVIREVGVDTGGCNIQFAVDPATGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|195978244|ref|YP_002123488.1| carbamoyl phosphate synthase large subunit [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
 gi|195974949|gb|ACG62475.1| carbamoyl-phosphate synthase large chain CarB [Streptococcus equi
           subsp. zooepidemicus MGCS10565]
          Length = 1067

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     AL++ G++V  ++        D+ V                +L   +PD     
Sbjct: 39  GTQACLALKEEGYQVILVNSNPATIMTDKEVADKVYIEPLTLAFVSRILRKERPDALLPT 98

Query: 58  LHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++     +               +  A   D  +         +P    +
Sbjct: 99  LGGQTGLNLAMELSKAGILQELGVELLGTTLSAIDQAEDRDLFKQLMKELGEPIPESEIV 158

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +++P       G  +   ++++   +      +   Q LIE+ 
Sbjct: 159 TTVEGAISFANAIGYPVIVRPAFTLGGTGGGICTNEEALRDIVENGLKLSPVTQCLIERS 218

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   + D   +     +F    +                ++  + ++  +
Sbjct: 219 IAGFKEIEYEVMRDAADNALVVCSMENFDPVGIHTGDSIVFAPTQTLSDVE-NQLLRDAS 277

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 278 LRIIRALKIEGGCNVQLALDPNSFSYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 333

Query: 292 M 292
           +
Sbjct: 334 I 334



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 95/291 (32%), Gaps = 30/291 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH----------GNFGE 64
            A++ AG++          +  D S+   L    L  +   NV+                
Sbjct: 588 KAIQAAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEEVMNVIELEQPKGVILQFGGQT 647

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQH 122
              +   L    +P   + +     + D+   ++ +   G+P  P          +++  
Sbjct: 648 AINLAEQLTKAGVPILGTQLEDLDRAEDRKLFEKALKDLGIPQPPGKTATNEAEALEAAR 707

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++ +  +   +  +   +    +LI+ Y+ G E     +
Sbjct: 708 AIGFPVLVRPSYVLGGRAMEIVENEDDLRSYMKTAVKASPEHPVLIDSYILGKECEVDAI 767

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   +  ++          + C G
Sbjct: 768 SDGQSVLIPGIMEHIERAG---VHSGDSMAVYPPQHLSKQVQDKIVDYTKRLAIGLNCIG 824

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+    + +V+ +E+N +   T     P ++        ++   ++
Sbjct: 825 MMNIQFVI--QNEQVYVIEVNPRASRT----VPFLSKVTNIPMAQVATKLI 869


>gi|91201061|emb|CAJ74119.1| hypothetical protein kuste3358 [Candidatus Kuenenia
           stuttgartiensis]
          Length = 383

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/256 (16%), Positives = 85/256 (33%), Gaps = 18/256 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
            +   L   K D+ F  +          +    +         +    +    DK    Q
Sbjct: 60  DLEAELKAGKYDVIFP-MEFSTQVLLTEVANRQMIEKYTRLPFADADLAKKGNDKAFIMQ 118

Query: 99  VVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                G+ V  + +VN            + P +IKP     S GI+ +K+ + + L L  
Sbjct: 119 YARKRGIDVPTTYMVNDIEQLAVIAKETAYPVLIKPRNSSGSRGIVYVKEKEEL-LTLYL 177

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                +   ++ E   DG ++    +          +       S+ +          + 
Sbjct: 178 KVHKEYPFPIIQEYIPDGGDVYGVGLLFNFQSEIRASFVYKRLRSHPVSGGPSTLRESVK 237

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            +   +I       A L  +++   G++  +F  DP  RK   LE+N +      S+  +
Sbjct: 238 REDIREI-------AGLFMKSLRWTGVAHVEFKIDPRDRKPKLLEVNPRF---WGSL--Q 285

Query: 277 MAAYAGYSFRELLLWM 292
           +A  +G  F  LL  +
Sbjct: 286 LAVESGIDFPFLLFRL 301


>gi|260430927|ref|ZP_05784898.1| pyruvate carboxylase [Silicibacter lacuscaerulensis ITI-1157]
 gi|260414755|gb|EEX08014.1| pyruvate carboxylase [Silicibacter lacuscaerulensis ITI-1157]
          Length = 1145

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 44/153 (28%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  +  +   +L+            E Y++
Sbjct: 144 MDAIRKEAAEIGYPLMLKASWGGGGRGMRPIYSEDELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L      +         ++  +       PA    +  +        
Sbjct: 204 KMITRARHVEVQILGDKHGQIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRAEICDLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  + K +++E+N +
Sbjct: 264 RICAHVNYECAGTVEFLMDMETGKFYFIEVNPR 296


>gi|240277805|gb|EER41313.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus H143]
          Length = 1251

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/267 (16%), Positives = 84/267 (31%), Gaps = 25/267 (9%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAIL 72
           E++L  G+  +      G +V+ +  D       A   P  AFN+  G          I+
Sbjct: 607 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNL--GETSAYLDGDRII 659

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC---------PSILVNRFTMDSQHL 123
           E+ +               +     Q  +  G+                   F       
Sbjct: 660 EIAQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSMEFLEAEAEK 719

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELT 178
              P +IK +KGG   G+ +    ++    L+       +S+     L+ +       + 
Sbjct: 720 TKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGDDTMLVEKYITTPRHIE 779

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V  D   +   +            K    +    LP     DI+ + +  A      +
Sbjct: 780 VQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPEATRKDIWDKARAAALA----V 835

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +F+FD  + + F++E+N +
Sbjct: 836 GYEGAGTVEFIFDNDTGEFFFMEMNTR 862


>gi|229496565|ref|ZP_04390279.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           endodontalis ATCC 35406]
 gi|229316462|gb|EEN82381.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           endodontalis ATCC 35406]
          Length = 1075

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ + G K   I+ +                       V  V+A  +PD    
Sbjct: 29  SGSQALKAIREEGIKTILINPNIATVQTSEGVADEVYFLPVTPFFVEKVIAKERPDGILL 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     Q +L+   +    + +     + D+    + ++   V    S  
Sbjct: 89  AFGGQTALNCGVALYRQGVLDRYNVEVLGTPVETIIATEDRELFVEKLNEINVKTIASEA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 149 VESIEAARKAAKHLGYPVIIRAAFALGGLGSGFCDNEEEL--DILCEKAFSFSPQVLVEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y +++ L
Sbjct: 207 SLKGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNNEYHKLRSL 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  DP S     +E+N +  ++  S     +   GY   
Sbjct: 266 AIRIIRHLGIVGECNVQYALDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 317


>gi|190894038|ref|YP_001984332.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699699|gb|ACE93782.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 126

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 19/96 (19%), Positives = 40/96 (41%), Gaps = 3/96 (3%)

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P    +  +         H +P  +     + ++      ++ + C+G+ R DF+++   
Sbjct: 16  PIGWRFYDDRLKQRSVDEHAIPKILQGPAAERIRDDVLRLYKQLDCKGLVRFDFIYN--D 73

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
               +LE+N  PG+ P S  P       +SF +L+ 
Sbjct: 74  GAPVYLEVNTIPGLLPESNAPLSFQSR-FSFEDLIT 108


>gi|225621306|ref|YP_002722564.1| carbamoyl phosphate synthase large subunit [Brachyspira
           hyodysenteriae WA1]
 gi|225216126|gb|ACN84860.1| carbamoyl phosphate synthase large subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 1065

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFNV 57
           G     +L++ G++V  I+                    ++ +    ++   +PD     
Sbjct: 30  GTQACQSLKEEGYEVILINSNPATIMTDAAVADKVYIEPINLNFAKRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCPS 110
           L G  G +  V  + E   +   +  +L + L+       + +        +  VP    
Sbjct: 90  LGGQTGLNL-VVELAESGILDEYNVEVLGTDLNAINCAEDRELFKKLMNDINEPVPESVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++  + I    V++P       G    + ++ +          +   + L+E+
Sbjct: 149 VHSVEEAIEFANKIGYHLVVRPAYTLGGTGGGFARNEKELIEICETGLKISPVHECLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +     + ++ +
Sbjct: 209 SIAG-YKEIEYEVMRDNNDNAIVVCNMENVDPVGIHTGDSIVVAPCQTLSDRENQMLRNV 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIRALKICGGCNVQLALDPKSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKISA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 93/280 (33%), Gaps = 32/280 (11%)

Query: 26  LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           + +AG++   I+ +                       V  ++   KP        G    
Sbjct: 581 IREAGYEAIVINNNPETVSTDFSISDKLYFEPLTIEDVMHIIELEKPKGVIVQFGGQTAI 640

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   + ++  + I  T    +  A    +        +   P   + +     +   + I
Sbjct: 641 NLAEKLVMHGVNILGTSLENINKAEDRHEFEEMLKTLNIPQPKGETAITVDEALVIANDI 700

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMG 183
             P +++P        + ++  D S+ + +  +         +LI++YV G E+    + 
Sbjct: 701 GYPVLVRPSYVLGGRAMEIVDNDASLKVYMETAVKEVSNKAPILIDRYVIGKEIEIDAIA 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
           D+  +V    +P    +       S +S  V P + I   + + +   A          G
Sbjct: 761 DSENNV---FIPGIMEHIERAGIHSGDSISVYPTQTISNKVKETIIDYAKRIGIGFNFIG 817

Query: 243 ISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
           +    F+ D  +  V+ LE+N       P ++ ++  P  
Sbjct: 818 LYNIQFIVDKENN-VYVLEVNPRSSRTVPFLSKITNVPMA 856


>gi|206601579|gb|EDZ38062.1| Carbamoyl-phosphate synthase, large subunit [Leptospirillum sp.
           Group II '5-way CG']
          Length = 1080

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 27/275 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++VS ++ +                      +V  VL   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVSLVNSNPATIMTDPQLSDATYMVPLTVEAVTRVLEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  V    + +L+ L I    + +     + D+   K+ + S G+    S  
Sbjct: 89  TMGGQTALNLAVELSDRGVLKRLGIELIGTSVETIRKAEDRGLFKKAMESIGLASPRSFV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +S P +I+P       G  V+   +     +      +   ++L+E+
Sbjct: 149 AHSMAEARSALGELSFPIMIRPSFTLGGSGGGVVFNLEEFEQRVQVGLEMSPVREVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFELEVVRDKADNAIIVCSIENLDPMGVHTGDSITVAPQMTLPDREYQYLRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +     G S   F   P + +V  +E+N +
Sbjct: 269 IAILREVGVETGGSNVQFAVHPETGRVVVIEMNPR 303



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  D+  E++        A+G RG+    F     +  V+ LE+N +   T  
Sbjct: 794 CFLPPMSLSADVLSEIRHQTRQLGLALGVRGLMNIQFAV--QNETVYVLEVNPRASRT-- 849

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCL 299
              P ++   G    ++ + ++  A+  
Sbjct: 850 --VPFVSKSIGIPLAKMAMRILLGATIR 875


>gi|291563076|emb|CBL41892.1| carbamoyl-phosphate synthase, large subunit [butyrate-producing
           bacterium SS3/4]
          Length = 1066

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/290 (13%), Positives = 89/290 (30%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A E  GF+   I         D D              V  ++   KPD A     G   
Sbjct: 583 AFEKEGFETVIINNNPETVSTDFDIADKLYFEPLTPEDVESIVDIEKPDGAVVQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  +   + I  T +  + +A   +                 ++        + + 
Sbjct: 643 IKLTEALMKMGVPILGTAAEDVDAAEDRELFDEILEQCQIPRAKGQTVFTAEEAKKAANE 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ I   +   +       +L+++Y+ G E+    + 
Sbjct: 703 LGYPVLVRPSYVLGGQGMQIAICDEDIDEFIGIINRIAQEHPILVDKYIMGKEIEVDAIC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D +  +    +   +           + +      I  D  K +        +A+  +G+
Sbjct: 763 DGTDILIPGIMEHIERTGIHSG---DSISVYPAKSITEDNKKTIVEYTEKLARALHVKGM 819

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+ +     VF +E+N +   T     P ++   G     L   ++
Sbjct: 820 INIQFIVN--DEGVFIIEVNPRSSRT----VPYISKVTGIPIVPLATQII 863



 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/317 (11%), Positives = 90/317 (28%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGIEVVLLNSNPATIMTDKDIADRVYIEPLTTEVVEQLIKKEKPDSVLPT 89

Query: 58  LHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G          +         + +  T +  +  A   +  +         V     +
Sbjct: 90  LGGQAGLNLAMELEEAGILKANNVRLIGTTALTIKKAEDREMFKETMEKIGEPVAPSEIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   ++     L      +   Q+L+E+ 
Sbjct: 150 EDVNTGLAVAKEIGYPVVLRPAYTLGGSGGGIAYNEEQCAEILENGLRLSRVGQVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNVITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIITELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGYTLDEIKNAVTKK 341


>gi|170745402|ref|YP_001766859.1| D-alanine-D-alanine ligase and related ATP-grasp protein-like
           protein [Methylobacterium radiotolerans JCM 2831]
 gi|170659003|gb|ACB28057.1| D-alanine-D-alanine ligase and related ATP-grasp protein-like
           protein [Methylobacterium radiotolerans JCM 2831]
          Length = 359

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 48/301 (15%), Positives = 100/301 (33%), Gaps = 31/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLV------LAHLKPDL-AFNVLHGNFGEDGL--VQ 69
                + L  AGF+    D +R+          L    P L  +N+            V 
Sbjct: 54  ANQLLTGLRSAGFRTRYFDGERAFIEQTLTDPTLGTHGPRLLVYNIAQSGTDAGRKSLVP 113

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---P 126
           A   L  I   +S     +L+ +K+    ++   G+ V  S      +            
Sbjct: 114 AFCALQGIATCNSNAYVVSLARNKLHVHSILKRFGLSVPDSWSYQAGSGWLLGRRPSGDA 173

Query: 127 PYVIKPLKG--------------GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             + K +                G+    ++ +K +++   +        G ++      
Sbjct: 174 TLIAKAIHESASIGLDGDSIGRAGAEYETMLARKSRTLRQAMFVQRLVA-GREMETPVVR 232

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G ++        +L  T+    +   Y         +  + +P      +  +V+R+A 
Sbjct: 233 VGGQVHVLGPAIVTLGGTDHLGSRILDYDSVA---HDDYGYAVPGPAEAPVVAKVRRVAA 289

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            A++ +G  G +R DF  D    + F +++   P +   S +  +   AG+   E+L  M
Sbjct: 290 AAYETLGLEGFARVDFRVDDA-GRPFVIDVATSPHLVWHSAYAHVFRAAGWGHEEMLACM 348

Query: 293 V 293
           V
Sbjct: 349 V 349


>gi|118580438|ref|YP_901688.1| acetyl-CoA carboxylase, biotin carboxylase [Pelobacter propionicus
           DSM 2379]
 gi|118503148|gb|ABK99630.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pelobacter propionicus DSM 2379]
          Length = 446

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 85/280 (30%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +     +  +   L  +                          
Sbjct: 14  ALRIIRACKELGIKTVAVYSQPDINSLHVKLADESVCIGPAASAQSYLNINAIISAAELT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
               +H   G   E+     I E   I +      +  +  DK+ ++Q V++ GVP+   
Sbjct: 74  DAEAIHPGYGFLSENADFAEICEKCGITFIGPSPESMRIMGDKISARQAVTAQGVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      +     I  P +IK   GG   G+ ++    ++P     + +       
Sbjct: 134 TKEGVASVDEAITIAKEIGFPVIIKATAGGGGRGMKIVHSQAALPNAFATARAEAQSGFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYK 225
             E Y++        +    L      V         ++          P+ I   ++  
Sbjct: 194 NPEVYIEKYCEHPRHVEIQILADKHGNVIHLGERDCSIQRRHQKLIEEAPSTISTPELRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A  A  ++G   +   +FL D  +   +++E+N +
Sbjct: 254 AMGEAAVRAAASVGYNSVGTVEFLVDKENN-FYFMEMNTR 292


>gi|313892811|ref|ZP_07826392.1| pyruvate carboxylase [Veillonella sp. oral taxon 158 str. F0412]
 gi|313442742|gb|EFR61153.1| pyruvate carboxylase [Veillonella sp. oral taxon 158 str. F0412]
          Length = 1148

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    I    +  DK+ 
Sbjct: 64  LDI-EDIIRIAKEHDIDAIHPG-YGFLSENEGFARRCEEEGIIFIGPKIKHLNMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +P+ P     +       +  +    P +IK + GG   G+  + + + + 
Sbjct: 122 AREQAKLAQIPMIPGSDGALKDYAQLEEFANTHGFPLMIKAVNGGGGRGMREVHRKEDLR 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +  V+   +   ++GD   +V  +            + 
Sbjct: 182 DAYDRAKSEAKAAFGDDDVYVEKLIVEPKHIEVQILGDEHGNVVHLHERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       + L+  K V   A    + +        +FL        +++E+N +
Sbjct: 238 HQKVVEMAPAFALSLETRKAVCDAAVKIMKNVEYVNAGTVEFLVTA-DGNFYFIEVNPR 295


>gi|39997117|ref|NP_953068.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens PCA]
 gi|39984007|gb|AAR35395.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens PCA]
 gi|298506130|gb|ADI84853.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter
           sulfurreducens KN400]
          Length = 446

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 84/284 (29%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A ++ G K   +       S+ + LA                  +   +     
Sbjct: 14  ALRVIRACKELGIKTVAVYSTADRDSLHVKLADESVCIGPAPSLQSYLNINAIISAAELT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
                    G   E+     I E   I +      +  +  DK+ ++Q V    VP+   
Sbjct: 74  DAEAIHPGYGFLSENAAFAEICENCGITFIGPSSQSMRIMGDKISARQAVIKENVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +      +     I  P +IK   GG   G+ ++    ++P           + + 
Sbjct: 134 TKEGVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +       +   VM D   +V  +            +             +  
Sbjct: 194 NPEVYIEKYCEKPRHVEIQVMADKHGNVIHLGERDCSIQ----RRHQKIIEESPCPVMTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + K +   A  A +A+G   +   +FL D      +++E+N +
Sbjct: 250 ALRKAMGDAAVRASKAVGYDSVGTVEFLVD-KDLNFYFMEMNTR 292


>gi|172045668|sp|O58056|PURT_PYRHO RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 430

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPT-SRYMYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIEL 177
           ++   I  P   K +   S  G   +K  + IP    ++ +   G  + +I +     ++
Sbjct: 147 EACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDV 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +     D     V          +          PA+I     +EV R+A      
Sbjct: 207 EVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDV 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +G  GI   +        KV+  E++ +P      +    +   G+S
Sbjct: 267 LGGLGIFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPPGFS 309


>gi|173122|gb|AAC41643.1| urea amidolyase [Saccharomyces cerevisiae]
          Length = 1835

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 54/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    ++        
Sbjct: 778 AAELEYPVMVKSTAGGGGIGLQKVDSEEDIEHIFETVKHQGETFFGDAGVFLKRFIENAR 837

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +  +  +++ A      + 
Sbjct: 838 HVEVQLMGDGFGKAIALGERDCSLQRRNQKVIEETPAPNLPEKTRLALRKAAESLGSLLN 897

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 898 YKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEWMI 944

Query: 294 EDAS 297
             A+
Sbjct: 945 RIAA 948


>gi|23099151|ref|NP_692617.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777379|dbj|BAC13652.1| biotin carboxylase [Oceanobacillus iheyensis HTE831]
          Length = 446

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 81/280 (28%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAF------ 55
            +           +   I  D D+    V                  L  D  F      
Sbjct: 14  ARRIIRTCRQLNIETIAIYSDADKDALFVKEADESYLVGGNRVQESYLNVDKIFEIAKQA 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             + +H   G   E+          +I +         L  DK+ +++ +   GVP+ P 
Sbjct: 74  NIDAIHPGYGFLSENASFANRCLKEKITFIGPSPEIIELMGDKIAARRTMKQAGVPIVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               I      +     I  P ++K   GG  +G+ ++  D  +      +S        
Sbjct: 134 TEEAISSVEEAVKYASEIGYPIMLKAAAGGGGIGMQIVHNDDELVKAFDSNSKRAANFFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
               +++        +    L      V         ++  +       P+    D + K
Sbjct: 194 NGSMFLEKKIEETRHIEFQVLADHHGNVVHLFERECSIQRRNQKVIEEAPSPFVSDRLRK 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   +  A + I        +FL D      ++LE+N +
Sbjct: 254 DMGEASIRATKQINYTNAGTIEFLVDKEEN-YYFLEMNTR 292


>gi|124515275|gb|EAY56785.1| Carbamoyl-phosphate synthase, large subunit [Leptospirillum
           rubarum]
          Length = 1080

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 87/275 (31%), Gaps = 27/275 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++VS ++ +                      +V  VL   +PD    
Sbjct: 29  SGTQAVRALKEEGYRVSLVNSNPATIMTDPQLSDATYMVPLTAEAVTRVLEKERPDAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  V    + +L+ L I    + +     + D+   K+ + S G+    S  
Sbjct: 89  TMGGQTALNLAVELSDRGVLKRLGIELVGTSVETIRKAEDRGLFKKAMESIGLASPRSFV 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +S P +I+P       G  V+   +     +      +   ++L+E+
Sbjct: 149 AHSMAEARSALGELSFPIMIRPSFTLGGSGGGVVFNLEEFEQRVQVGLEMSPVREVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 209 SLLGWKEFELEVVRDKADNAIIVCSIENLDPMGVHTGDSITVAPQMTLPDREYQYLRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +     G S   F   P + +V  +E+N +
Sbjct: 269 IAILREVGVETGGSNVQFAVHPETGRVVVIEMNPR 303



 Score = 43.3 bits (100), Expect = 0.040,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 91/296 (30%), Gaps = 29/296 (9%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I           D+             V  +L    P        G   
Sbjct: 588 ALREQGVEAVMINCNPETVSTDFDISDRLHFDPLSMEDVLSILEREDPLGVVVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T   +   A   ++ R+         P          T      
Sbjct: 648 LKLARKLAEAGIPILGTSPDMTDLAEDRERFRAVIEKLGLRQPASALAHTIGETAGLVRE 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + V+  ++ +   L +  S +    LLI+ ++ G      V  
Sbjct: 708 IGFPVLVRPSYVLGGEAMEVLFDEEGLEEYLKRVQSLDFRFPLLIDSFI-GQATEVDVDA 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                   +A    +       +S  +S  + P  +   +  E++R       A+G RG+
Sbjct: 767 LCDQTEVFVAG-ILEHIEEAGIHSGDSSCFLPPMSLSTGVLSEIRRQTRQLGLALGVRGL 825

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
               F     +  V+ LE+N +   T     P ++   G    ++ + ++  A+  
Sbjct: 826 MNIQFAV--QNETVYVLEVNPRASRT----VPFVSKSIGVPLAKMAMRILLGATIR 875


>gi|88606862|ref|YP_504866.1| carbamoyl phosphate synthase large subunit [Anaplasma
           phagocytophilum HZ]
 gi|88597925|gb|ABD43395.1| carbamoyl-phosphate synthase, large subunit [Anaplasma
           phagocytophilum HZ]
          Length = 1086

 Score = 56.0 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 91/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG      L + G++   +         D D              +  ++   KPD    
Sbjct: 29  SGTQACKVLREEGYRTILVNSNPATIMTDPDLADSTYIEPITANFIEQIIIKEKPDALLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  ++      L    +    +   A   + D+   ++ V   G     S++
Sbjct: 89  TVGGQTVLNVALELFDKGVLSEHNVEMIGTNHTAIRKAEDRGLFREAVHKVGAKCPKSVI 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + +    +  L  I  P +I+P      +G  +   +      + +    +   ++ +++
Sbjct: 149 IRQGDPIAPALEYIGLPAIIRPSFTLGGIGGGIATTEAEFYAAVERGFVMSPTSEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPALTLRDEEYQKMRNIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPQRDGEIVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.44,   Method: Composition-based stats.
 Identities = 27/164 (16%), Positives = 61/164 (37%), Gaps = 10/164 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +++P        + V++   ++   L  + +      LLI+++++       V  DA
Sbjct: 716 YPVLLRPSYVIGGQFMSVVRDRSALSSYLHINKNVFDTGCLLIDEFLND---AVEVDVDA 772

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
             D   + +     +  E    S +S   LP      +I   +         A+  RG+ 
Sbjct: 773 ICDGDNVYIAGIMEHVEEAGIHSGDSACSLPYYTLGKEIVDLIAECTKKVASALNVRGLL 832

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +      ++++ LE+N +   T     P +A  +G    ++
Sbjct: 833 NIQYAI--KDKELYVLEVNPRASRT----VPFIAKASGVPVAKI 870


>gi|224372451|ref|YP_002606823.1| phosphoribosylglycinamide formyltransferase 2 [Nautilia
           profundicola AmH]
 gi|223588764|gb|ACM92500.1| phosphoribosylglycinamide formyltransferase 2 [Nautilia
           profundicola AmH]
          Length = 389

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 74/269 (27%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A      G +V  +D                +D      V  V+   KPD     +
Sbjct: 23  GKEVAIEANRLGCEVIAVDRYPNAPAMLVAQKSYVIDMKNKEQVLDVIRREKPDYVLPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         +  IP   +    +    +                  +       
Sbjct: 83  EAINIDALFTAEKEGIHVIPNAEAVN-KTMNRKNIRVFAAEELGLKTSKYEFVSTYEDLK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIEL 177
           ++   +  P V+KP+   S  G  ++K  + +      +     G     I +     + 
Sbjct: 142 EACDRLGYPVVVKPIMSSSGHGQSIVKSPEEVITAWEFAKEDARGSADELIVEEFIHFDY 201

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   + +      P     S                ++      + + +A    + 
Sbjct: 202 EITLLTAKNDNEIVFCPPIGHIQS-----GGDYIFSWQEMEMSETALNKAKEIARKIVEG 256

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G RGI   +        +V++ E++ +P
Sbjct: 257 LGGRGIFGVELFV--KGDEVYFSEVSPRP 283


>gi|296330515|ref|ZP_06872993.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305674564|ref|YP_003866236.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|6449062|gb|AAF08802.1|AF184956_9 YngH [Bacillus subtilis subsp. spizizenii ATCC 6633]
 gi|296152197|gb|EFG93068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305412808|gb|ADM37927.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 444

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 2/152 (1%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +    +   I  P ++K   GG  +G+ +++ ++++      +             Y++ 
Sbjct: 142 QEACRTASQIGYPVMLKASAGGGGIGMQLVQNEEALRKAYEGNKKRAADFFGDGSMYIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
           +      +    L                ++          P+      +  ++ + A  
Sbjct: 202 VIEHARHIEVQLLADHFGHTIHLFERDCSVQRRHQKVIEEAPSPFLDDKLRMKIGQTAVK 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +AIG       +FL DP ++  ++LE+N +
Sbjct: 262 AAKAIGYTNAGTIEFLVDP-NQNFYFLEMNTR 292


>gi|42525182|ref|NP_970562.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
 gi|39577393|emb|CAE81216.1| pyruvate carboxylase [Bdellovibrio bacteriovorus HD100]
          Length = 500

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+++   +        S           Y++       
Sbjct: 150 AEQIGLPIIIKASAGGGGKGMRVVRQMDELESAFRACRSEGQNYFADPTVYIEKFINDPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +       T             ++          P+  +P ++   +   A  A + I 
Sbjct: 210 HIEIQVFGDTHNNHVHLFERECSVQRRHQKIIEECPSPSVPHEVRLRMGEAAVRAAKQIN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD  +++ +++E+N +
Sbjct: 270 YVGAGTIEFIFDNATKEFYFMEMNTR 295


>gi|259505855|ref|ZP_05748757.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           efficiens YS-314]
 gi|259166529|gb|EEW51083.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           efficiens YS-314]
          Length = 413

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    A +  G +V  +D                +D +    +  L    KPD     +
Sbjct: 38  GKEVTIAFQRLGVEVHAVDRYDNAPAHQVAHFSYVIDMTDAAAVRELVTTIKPDFIIPEI 97

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +      L  +  T      +       R                       
Sbjct: 98  EALATDELVRIEQEGLATVVPTARATQLTMNREGIRRLASEELGLPTSGYEFCSTFEEFT 157

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIE 176
            +   +  P V+KP+   S  G  V+   + +      + S       ++++EQ+V+   
Sbjct: 158 AAAERLGYPNVVKPVMSSSGKGQSVVTSAEDLESAWEYAMSGARVSNQRVIVEQFVEFDY 217

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T              +          P ++     +  + +A     
Sbjct: 218 EITLLTVRGIDPATGKPATWFCEPIGHRQQDGDYVESWQPMEMTAPALENARSVAARITN 277

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 278 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 305


>gi|172044668|sp|Q8FMB3|PURT_COREF RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 402

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    A +  G +V  +D                +D +    +  L    KPD     +
Sbjct: 27  GKEVTIAFQRLGVEVHAVDRYDNAPAHQVAHFSYVIDMTDAAAVRELVTTIKPDFIIPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +      L  +  T      +       R                       
Sbjct: 87  EALATDELVRIEQEGLATVVPTARATQLTMNREGIRRLASEELGLPTSGYEFCSTFEEFT 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIE 176
            +   +  P V+KP+   S  G  V+   + +      + S       ++++EQ+V+   
Sbjct: 147 AAAERLGYPNVVKPVMSSSGKGQSVVTSAEDLESAWEYAMSGARVSNQRVIVEQFVEFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T              +          P ++     +  + +A     
Sbjct: 207 EITLLTVRGIDPATGKPATWFCEPIGHRQQDGDYVESWQPMEMTAPALENARSVAARITN 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 294


>gi|25029150|ref|NP_739204.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           efficiens YS-314]
 gi|23494438|dbj|BAC19404.1| putative phosphoribosylglycinamide formyltransferase
           [Corynebacterium efficiens YS-314]
          Length = 425

 Score = 55.6 bits (132), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK    A +  G +V  +D                +D +    +  L    KPD     +
Sbjct: 50  GKEVTIAFQRLGVEVHAVDRYDNAPAHQVAHFSYVIDMTDAAAVRELVTTIKPDFIIPEI 109

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +      L  +  T      +       R                       
Sbjct: 110 EALATDELVRIEQEGLATVVPTARATQLTMNREGIRRLASEELGLPTSGYEFCSTFEEFT 169

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIE 176
            +   +  P V+KP+   S  G  V+   + +      + S       ++++EQ+V+   
Sbjct: 170 AAAERLGYPNVVKPVMSSSGKGQSVVTSAEDLESAWEYAMSGARVSNQRVIVEQFVEFDY 229

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T              +          P ++     +  + +A     
Sbjct: 230 EITLLTVRGIDPATGKPATWFCEPIGHRQQDGDYVESWQPMEMTAPALENARSVAARITN 289

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 290 ALGGRGVFGVELFVSGDD--VYFSEVSPRP 317


>gi|319901931|ref|YP_004161659.1| carbamoyl-phosphate synthase large subunit [Bacteroides helcogenes
           P 36-108]
 gi|319416962|gb|ADV44073.1| carbamoyl-phosphate synthase large subunit [Bacteroides helcogenes
           P 36-108]
          Length = 1077

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIQTILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYKDGIFEKYGVKVLGTPVQAIIDTEDREIFVHKLNEIDVHTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENVVDARRAARELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP+S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPMSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|302903805|ref|XP_003048937.1| hypothetical protein NECHADRAFT_47144 [Nectria haematococca mpVI
           77-13-4]
 gi|256729871|gb|EEU43224.1| hypothetical protein NECHADRAFT_47144 [Nectria haematococca mpVI
           77-13-4]
          Length = 368

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 43/213 (20%), Positives = 77/213 (36%), Gaps = 21/213 (9%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              +   N      Q  +  P V KP++G  S G+ V    Q +       S +     +
Sbjct: 147 WTINESPNVEQDIQQLNLPFPVVAKPIRGRGSHGVRVCHDSQEL--ADHARSLFKESPAI 204

Query: 167 LIEQYVDGIELTCGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           ++E+++ G E T  VM          +L V            Y    +   ++  + A  
Sbjct: 205 MLEEFLSGEEATVTVMPPGPGRDNYWALPVVTRFNHVDGVAPYNGTVAVTANSRAITADE 264

Query: 220 PLD-IYKEVQRLAFLAHQAIGCRGISRSDF--LFDPLSRKVFWLEINVQPGMT------- 269
             +  Y++V      A + +G     R D     D    K    ++N++P MT       
Sbjct: 265 GNEPTYQQVAAECERAARELGVTAPIRIDVRRFKDSADSKFALFDVNMKPNMTGPGRPGR 324

Query: 270 --PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               S+     A  G+ ++ELL  ++  +S LR
Sbjct: 325 EDQASLTLLGGAALGWDYQELLRRILSTSSTLR 357


>gi|294665451|ref|ZP_06730737.1| urea amidolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
 gi|292604786|gb|EFF48151.1| urea amidolyase [Xanthomonas fuscans subsp. aurantifolii str. ICPB
           10535]
          Length = 1215

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+        +                    +++       
Sbjct: 150 AQRIGYPVMLKSTAGGGGIGLSRCDNAAELATAYDSVQRLGQNFFKDSGVFIERFVADAR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+          PA   P  I   +   A    +A+ 
Sbjct: 210 HVEVQIFGDGKGRVVALGERDCSLQRRRQKVVEETPAPHLPHAIRAALLDAAVKLGEAVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D      ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 270 YVSAGTVEFIYDAARDAFYFLEVNTRLQVEHP-ITE--------AVTGL---DLVEWMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|241204459|ref|YP_002975555.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858349|gb|ACS56016.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 449

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/258 (15%), Positives = 85/258 (32%), Gaps = 29/258 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+ +K      G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILEAHGITFIGPTADHIRIMGDKITAKTTALELGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +      + +   I  P +IK   GG   G+ V K +  +      + +      G+
Sbjct: 135 DGEVKTEEDALKTAAEIGYPVLIKATAGGGGRGMKVAKSEADVIEAWSTARTEAAAAFGN 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +   G      +      +    A+   +      +             + ++  
Sbjct: 195 DAVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
            ++ ++   A + +  RG    +FL+   + + +++E+N       P +T         A
Sbjct: 253 MKIGQICADAMKKLKYRGAGTIEFLY--ENGEFYFIEMNTRLQVEHP-ITE--------A 301

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   +  AS
Sbjct: 302 ITGI---DLVHEQIRVAS 316


>gi|124025600|ref|YP_001014716.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. NATL1A]
 gi|123960668|gb|ABM75451.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 1102

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 98/315 (31%), Gaps = 41/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALRGEGFEVILVNSNPASIMTDPETANRTYVEPLTASVVEQIIKIERPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  V+     ILE   I    + + A   + D+   K  + + GV VCPS  
Sbjct: 89  TMGGQTALNISVELAESGILEKYNIELIGADLNAIKKAEDRNLFKIAMKNIGVDVCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +    +    + S P +I+P       G  +                 +   Q+LIE
Sbjct: 149 ASNLQEAVIVGNEISSFPKIIRPAFTLGGSGGGIAYNQDEFLELCKTGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEFELEVMRDLSDNVVIICSIENVDPMGVHTGDSITVAPAQTLTDREYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL- 288
              +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SISIIREIGVATGGSNIQFAINPNNGEIIVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 289 --------LLWMVED 295
                   L  ++ D
Sbjct: 325 ALLAVGYRLDEIIND 339



 Score = 42.6 bits (98), Expect = 0.078,   Method: Composition-based stats.
 Identities = 19/176 (10%), Positives = 61/176 (34%), Gaps = 8/176 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P V++P        + ++ +   +   + ++ +      +LI+QY++   +   
Sbjct: 729 ANKVGYPLVVRPSYVLGGRAMEIVYEQDELERYIKEAVNVEPDHPILIDQYLEN-AIEVD 787

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V     +    +     +       +S  ++  +    + ++  K ++         +  
Sbjct: 788 VDALCDVSKNVVIGGLMEHIEPAGIHSGDSACCLPSITLSVESIKTIKHWTKSLAIELDV 847

Query: 241 RGISRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F     D  +  V+ +E N +   T     P ++   G    ++   ++
Sbjct: 848 VGLINLQFAVKRDDEGNEIVYIIEANPRASRT----VPFVSKATGVPLAKIATQLL 899


>gi|30678473|ref|NP_849583.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana]
 gi|20455046|sp|Q42523|MCCA_ARATH RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|17979456|gb|AAL50065.1| At1g03090/F10O3_8 [Arabidopsis thaliana]
 gi|332189406|gb|AEE27527.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis
           thaliana]
          Length = 734

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 49/160 (30%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ +++  +      L +         
Sbjct: 170 YHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFG 229

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK- 225
           +    ++        +           V         ++          PA    + ++ 
Sbjct: 230 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISEKFRA 289

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + + A  A +A+G       +F+ D  S + +++E+N +
Sbjct: 290 NLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTR 329


>gi|14590236|ref|NP_142302.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus
           horikoshii OT3]
 gi|88192722|pdb|2CZG|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
           Ot3
 gi|88192723|pdb|2CZG|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase (Ph0318) From Pyrococcus Horikoshii
           Ot3
 gi|134104146|pdb|2DWC|A Chain A, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase From Pyrococcus Horikoshii Ot3
           Complexed With Adp
 gi|134104147|pdb|2DWC|B Chain B, Crystal Structure Of Probable Phosphoribosylglycinamide
           Formyl Transferase From Pyrococcus Horikoshii Ot3
           Complexed With Adp
 gi|3256709|dbj|BAA29392.1| 433aa long hypothetical phosphoribosylglycinamide formyl
           transferase [Pyrococcus horikoshii OT3]
          Length = 433

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/287 (14%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 31  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 90

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 91  EAINLDALFEFEKDGYFVVPNARATWIAMHRERLRETLVKEAKVPT-SRYMYATTLDELY 149

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIEL 177
           ++   I  P   K +   S  G   +K  + IP    ++ +   G  + +I +     ++
Sbjct: 150 EACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDV 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +     D     V          +          PA+I     +EV R+A      
Sbjct: 210 EVTELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDV 269

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +G  GI   +        KV+  E++ +P      +    +   G+S
Sbjct: 270 LGGLGIFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPPGFS 312


>gi|297843108|ref|XP_002889435.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297335277|gb|EFH65694.1| 3-methylcrotonyl-CoA carboxylase 1 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 734

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 50/160 (31%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ +++ ++      L +         
Sbjct: 170 YHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSEKDFADSFLGAQREAAASFG 229

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK- 225
           +    ++        +           V         ++          PA    + ++ 
Sbjct: 230 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISEKFRA 289

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + + A  A +A+G       +F+ D  S + +++E+N +
Sbjct: 290 NLGQAAVSAARAVGYYNAGTVEFIVDTESDQFYFMEMNTR 329


>gi|260829361|ref|XP_002609630.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae]
 gi|229294992|gb|EEN65640.1| hypothetical protein BRAFLDRAFT_83617 [Branchiostoma floridae]
          Length = 875

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 40/309 (12%), Positives = 94/309 (30%), Gaps = 43/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 46  SGSQAIKALKEEGIQTVLINPNIATVQTSKGLADKVYFLPIKPDYVTQVIKSERPDGILL 105

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +   Q +LE   +    + + +  ++ D+     K    +  V    +
Sbjct: 106 TFGGQTALNCGVELTKQGVLEKYNVKVLGTPVSSIVMTEDREIFAKKMAEINEFVAPSEA 165

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 T+++   +  P +++       LG         +      + +    +Q+L+++
Sbjct: 166 AYSVAQTVEAAERLGYPVMVRAAYALGGLGSGFANNKSELTKLATAAFAHT--NQVLVDK 223

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 224 SLKGW-KEVEYEVVRDGFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYNMLRTT 282

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    + +G  G     +  +P + + + +E+N +  ++  S        +P     A  
Sbjct: 283 AIKVIRHLGVVGECNIQYALNPENEQFYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 340

Query: 282 --GYSFREL 288
             G    EL
Sbjct: 341 ALGIPLPEL 349


>gi|134094612|ref|YP_001099687.1| phosphoribosylglycinamide formyltransferase 2 [Herminiimonas
           arsenicoxydans]
 gi|172044148|sp|A4G4X3|PURT_HERAR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|133738515|emb|CAL61560.1| Phosphoribosylglycinamide formyltransferase 2 (GART 2) (GAR
           transformylase 2) (5'-phosphoribosylglycinamide
           transformylase 2) (Formate-dependent GAR transformylase)
           [Herminiimonas arsenicoxydans]
          Length = 407

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/283 (10%), Positives = 74/283 (26%), Gaps = 25/283 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    +L+  G +V  +D                +D +    +  ++   KPDL    +
Sbjct: 30  GKEVIISLQRLGIEVIAVDRYANAPGHQVAHRAYVIDMTDGVALAALINQEKPDLVVPEI 89

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L       + +  T      +       R                   +   
Sbjct: 90  EAIATATLLEMENAGNVRVIPTARAAWLTMDREGIRRLAAEELGVATSPYRFADSLKELK 149

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
                I  P V+KP+   S  G   +     I      +++        +I +     + 
Sbjct: 150 AGCADIGYPCVVKPVMSSSGKGQSKLNSADDIEAAWNCAAAGGRVDTGRVIVEGFIDFDY 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++                L+ +        P  +     ++   +A      
Sbjct: 210 EITLLTVRAIGADGATHTHFCEPIGHLQVNGDYVESWQPQAMHPGALQKAHDIAKKVTDN 269

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +G  G+   +         V++ E++ +P      +    +  
Sbjct: 270 LGGLGLFGVELFV--KHDMVWFSEVSPRP--HDTGMVTMASQE 308


>gi|154686270|ref|YP_001421431.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens FZB42]
 gi|42491131|emb|CAE11268.1| YngH protein [Bacillus amyloliquefaciens FZB42]
 gi|154352121|gb|ABS74200.1| YngH [Bacillus amyloliquefaciens FZB42]
          Length = 449

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ ++  ++ +      +             Y++ +     
Sbjct: 148 ARAIGFPVMLKASAGGGGIGMQIVHSEEELAKAFEGNQKRAASFFGDGAMYMEKVIENAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P   +  ++ + +   A  A ++IG
Sbjct: 208 HIEIQILADSFGNTVHLFERDCSVQRRHQKVIEEAPSPFVDDELRQRLGETAIKAAKSIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +     +FL D    ++++LE+N +
Sbjct: 268 YQNAGTIEFLVDEKK-QIYFLEMNTR 292


>gi|294678124|ref|YP_003578739.1| acetyl-CoA carboxylase biotin carboxylase [Rhodobacter capsulatus
           SB 1003]
 gi|294476944|gb|ADE86332.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter capsulatus
           SB 1003]
          Length = 448

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +LE   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AIHPGYGFLSENATFVQVLEDHGITFIGPKAEHIRIMGDKITAKDTAKKLGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +        +   +  P +IK   GG   G+ V + +  + +    + S     + + +
Sbjct: 137 GVPDFEAAKKAAAEMGYPVIIKATAGGGGRGMKVAQSEAELEIAFRTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   + GD       +            +             I  +  
Sbjct: 197 VYMEKYLQRPRHIEVQIFGDGRGRAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +   A   +G  G    +FL+     + +++E+N +
Sbjct: 253 ARIGGICAKAMGELGYSGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|33865364|ref|NP_896923.1| carbamoyl phosphate synthase large subunit [Synechococcus sp. WH
           8102]
 gi|33632533|emb|CAE07345.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp. WH
           8102]
          Length = 1107

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALRSEGYEVILVNSNPASIMTDPEMADRTYIEPLTPDVVTRVIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLERYGVELIGADLQAIQKAEDRLLFKQAMERIGVQVCPSGI 148

Query: 113 VNRFTMDSQH---LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASTLEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDQADNVVILCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|251787696|ref|YP_003002417.1| urea carboxylase [Dickeya zeae Ech1591]
 gi|247536317|gb|ACT04938.1| urea carboxylase [Dickeya zeae Ech1591]
          Length = 1197

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P ++K   GG  +G+     +  +     +       +      +++    
Sbjct: 144 CEQAQRIGYPVMLKSTAGGGGIGMQRCNDEDQLIDAFTRVKRLAGNNFADDGVFLEKFIA 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        +  V          +  +       PA    D +  E+Q  A    +
Sbjct: 204 QARHIEVQVFGDGQGNVIALGERDCSAQRRNQKVIEETPAPHLSDGVRAELQATAIRLCR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A+  R     ++++D  S++ ++LE+N +
Sbjct: 264 AVNYRSAGTVEYVYDESSKQFWFLEVNTR 292


>gi|157125644|ref|XP_001654407.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
 gi|108873523|gb|EAT37748.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
          Length = 698

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 18/186 (9%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M     I  P +IK ++GG   G+ + + +      L  + + +          ++    
Sbjct: 175 MQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFFPALQSARTESEKAFGDSSMLLERYVR 234

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
           +   +                     ++          PA     ++  ++   A  A +
Sbjct: 235 SPRHVEVQVFADHHGNAVYLYERDCSVQRRHQKIIEEAPAPGLSEELRVQLGEAAVRAAK 294

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           A+   G    +F+ D       ++E+N       P +T +            +  +L+ W
Sbjct: 295 AVNYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEW 342

Query: 292 MVEDAS 297
            ++ AS
Sbjct: 343 QIKVAS 348


>gi|157125640|ref|XP_001654405.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
 gi|108873521|gb|EAT37746.1| carboxylase:pyruvate/acetyl-coa/propionyl-coa [Aedes aegypti]
          Length = 704

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 59/186 (31%), Gaps = 18/186 (9%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M     I  P +IK ++GG   G+ + + +      L  + + +          ++    
Sbjct: 175 MQEAKKIGFPLMIKAVRGGGGKGMRIAETEADFFPALQSARTESEKAFGDSSMLLERYVR 234

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
           +   +                     ++          PA     ++  ++   A  A +
Sbjct: 235 SPRHVEVQVFADHHGNAVYLYERDCSVQRRHQKIIEEAPAPGLSEELRVQLGEAAVRAAK 294

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           A+   G    +F+ D       ++E+N       P +T +            +  +L+ W
Sbjct: 295 AVNYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEW 342

Query: 292 MVEDAS 297
            ++ AS
Sbjct: 343 QIKVAS 348


>gi|624691|gb|AAA60988.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+GI   +  Q +   L ++  ++   
Sbjct: 44  LKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGISKAENRQELQNALQEAYRYDTRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V    FY Y  KY        +PA+IP +  
Sbjct: 104 IVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYDYNSKYIDNRIEMQIPAQIPEETQ 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 164 AKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|7157939|gb|AAF37349.1|AF170810_1 D-alanine:D-alanine ligase [Enterococcus sulfureus]
          Length = 200

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 1/162 (0%)

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                +         +     +  +  P  +KP   GSS+GI   +    +   L ++  
Sbjct: 39  PYMPVLEHQWKENPKQVFEQCEGSLLYPMFVKPANMGSSVGISKAENRLELQAALAEAYK 98

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           ++    +        IE+      D         V    FY Y  KY   N    +PA++
Sbjct: 99  YDSRVVIEQGIEAREIEVAVLGNEDVRTTAAGEIVKDVAFYDYNSKYIDNNIEMQIPAQV 158

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
             ++ ++ Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 159 SDEVQQKAQEYAKKAYIMLGGSGLSRCDFFLT-SKNELFLNE 199


>gi|1255015|gb|AAB17898.1| D-alanine:D-alanine ligase [Enterococcus cecorum]
          Length = 195

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 60/157 (38%), Gaps = 6/157 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           + +             +  +  P  +KP   GSS+GI   +    +   L ++  ++   
Sbjct: 44  LAMHWKQDPQLIFEHCEGSLLYPMFVKPANMGSSVGISKAENRDELEAALNEAFLYD--- 100

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                    GIE+    M +    +    V    FY Y  KY        +PA++P ++ 
Sbjct: 101 --TRGIIEQGIEVAVLEMKNVRTTMAGEIVKDVAFYDYNSKYIDNKIVMQIPAQVPDEVQ 158

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 159 QKAQEYAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 194


>gi|189499301|ref|YP_001958771.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides BS1]
 gi|189494742|gb|ACE03290.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides BS1]
          Length = 447

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 43/146 (29%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ V+     +   +  + +           Y++       
Sbjct: 148 AEKIGYPIIIKPTAGGGGKGMRVVNDGGELGKAIATAQNEAQQAFGNSGVYIEKFIECPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A  AI 
Sbjct: 208 HVEIQVLSDQHGNTIHLGERDCTIQRRHQKLIEETPSPAIHEEQRRKMGEAAVAAAAAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTVEFLLDKHGN-FYFMEMNTR 292


>gi|116330483|ref|YP_800201.1| carbamoyl phosphate synthase large subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124172|gb|ABJ75443.1| Carbamoyl-phosphate synthase (glutamine- hydrolyzing), large
           subunit [Leptospira borgpetersenii serovar Hardjo-bovis
           JB197]
          Length = 1106

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG   A AL++ G +V  +         D D              V  +L   KPD    
Sbjct: 29  SGTQAAKALKEKGIRVILLNSNPATIMTDPDLADATYVEPMTVPVVQKILEKEKPDAILP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       LE   +    + + A   + D+   K+ +   GV V  S  
Sbjct: 89  TVGGQTALNLALACNGAGLLEKYNVELIGAKVDAIKKAEDRELFKKAMEKIGVRVPASGL 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   + +  +  P +++P       G  +   +++    + +    +   Q+L+E+
Sbjct: 149 ANNLTDAAEIKKKLGLPLIVRPAFTLGGTGGGIAYTEETFEEVVSKGLKASPISQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEFELEVMRDLADNVVIICSIENIDPMGVHTGDSITVAPQQTLSDKEYQNLRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IAIIREIGVETGGSNIQFAVNPANEDVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|116072928|ref|ZP_01470190.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp.
           RS9916]
 gi|116068233|gb|EAU73985.1| carbamoyl phosphate synthetase, large subunit [Synechococcus sp.
           RS9916]
          Length = 1107

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 98/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     AL   GF+V  ++        D  +                V+   +PD    
Sbjct: 29  SGTQACKALRADGFEVVLVNSNPASIMTDPELADRTYIEPLTPEVVTRVIEQERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D+   KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALAENGTLERYGVELIGADLPAIQKAEDRQLFKQAMERIGVKVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         + + P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSMEEAEAVGAAIGTFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +    +D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDQVDNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P    V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDDGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|325125763|gb|ADY85093.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
 gi|325125814|gb|ADY85144.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Lactobacillus delbrueckii subsp. bulgaricus 2038]
          Length = 824

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 24/175 (13%), Positives = 64/175 (36%), Gaps = 11/175 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS--SSWNHGDQLLIEQYVDGIELT 178
            + +  P +++P       G+ +   D  +   +             +LI++Y+ G E  
Sbjct: 456 ANELGYPVLVRPSYVLGGAGMEIALNDGDLKRFIDHITSQFNIEDHPILIDKYLAGKECE 515

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              + D    +    +   +       +S  + +   P KI  ++ + +   +    +A+
Sbjct: 516 VDAICDDEGILIPGIMEHVERAG---VHSGDSISIYPPQKISQEMKERIVEYSKRLAKAL 572

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +G+    F+      KV+ +E+N +   T     P ++   G    ++   ++
Sbjct: 573 KVKGLMNIQFIV--YENKVYVIEVNPRSSRT----IPYISKVTGIPLVDVATNVI 621



 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 80/257 (31%), Gaps = 11/257 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   KPD     + G    +  +    +  LE   +    +      ++ D++  K
Sbjct: 20  VKQLIEKEKPDALLPTMGGQNALNIAMALADEGFLEKHHVKTIGTDTDTIKMAEDRLEFK 79

Query: 98  QVVSSC--GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            ++      V     +      +     I  P V++P       G  +   +Q +     
Sbjct: 80  NLMERIGEPVAKSVVVNYVEDAIAFAKEIGYPVVVRPAYTLGGTGGGIAHNEQELHEICS 139

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
                +   + LIEQ + G                 I V   +       ++  +     
Sbjct: 140 NGLRLSRVTECLIEQSIAGW-KEVEYEVMRDGAGNCITVCNMENMDPVGVHTGDSIVVAP 198

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
              +    Y+ ++  A     A+  +G     F  +P S +   +E+N  P ++  S   
Sbjct: 199 SQTLSDKDYQMLRSSALNIITALNIKGGCNVQFALNPDSFEYCVIEVN--PRVSRSS--A 254

Query: 276 EMAAYAGYSFRELLLWM 292
             +   GY   +L   +
Sbjct: 255 LASKATGYPIAKLATKI 271


>gi|188580296|ref|YP_001923741.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium populi
           BJ001]
 gi|179343794|gb|ACB79206.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium populi
           BJ001]
          Length = 455

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 72/223 (32%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L    I +         +  DK+ +K+     G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLAHHNIGFIGPKAEHIRVMGDKIEAKRTAKRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +            I  P ++K   GG   G+ V + +  +   L  + +     +  
Sbjct: 135 EGGVSDPDEAKRVAAEIGYPVLVKAASGGGGRGMKVARSEAELEQALDMARTEAKAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   ++GD       +A           K      +  L A++  +
Sbjct: 195 DAVYLEKYLTKPRHIEVQILGDGKGHAVHLAERDCSLQRRHQKVWEEGGSPALNAEMRAE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I          A + +G  G    +FL+     + +++E+N +
Sbjct: 255 IGGICA----NAMRELGYLGAGTIEFLY--EDGRFYFIEMNTR 291


>gi|289522764|ref|ZP_06439618.1| carbamoyl-phosphate synthase, large subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
 gi|289504600|gb|EFD25764.1| carbamoyl-phosphate synthase, large subunit [Anaerobaculum
           hydrogeniformans ATCC BAA-1850]
          Length = 1042

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI--------------DV-------DRSVGLVLAHLKPDLAFNV 57
           G     AL + G++V  +              D+         +V  ++    P      
Sbjct: 26  GSQACKALHEEGYRVILLNSNPATIQTDTAMADIVYIKPLTAEAVEAIVEEHHPKGVIAT 85

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK-------MRSKQVVSSCGVPVCPS 110
           L G    +  V+   E          IL + +S  K        R+        VP   +
Sbjct: 86  LGGQTALNLCVECE-EKGIWKKAGVRILGTPISAIKAAEGRESFRNLMKSIGQPVPKSVA 144

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++       P +++P       G  +   ++ +   + +    +   ++L+E 
Sbjct: 145 VSSMEEALEFSQSQRFPLIVRPDFTLGGTGGGITWNEEELKERIKEGLQASPVHRVLVEN 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G      +          + V   +       ++  +        +  + +  ++  
Sbjct: 205 YLLGW-REIELEVIRDARGDCLCVCGMENVDPMGIHTGDSIVVSPVLTLTKEEWNLLRTA 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                +A+  RG     F   P     + +E+N +   +  S     +   GY    +  
Sbjct: 264 GLAITKALDVRGACNVQFALSPEGNSYYVIEVNPRA--SRSS--ALASKATGYPIARIAT 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 91/285 (31%), Gaps = 26/285 (9%)

Query: 9   SSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLV 68
           S++ ++S           +   F+   +     V  +L   + +  F    G       +
Sbjct: 591 STDHDIS-----------DALYFEPLHV---EDVKAILKRERAEGFFCSFGGQTSLKLGL 636

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPY 128
               E   +  T++  +  A    +            P   +    +  +D    +  P 
Sbjct: 637 ALAGEGFSMLGTNASAIVEAEDRGRFCDILHKLDIPYPPGEAARNLKEAVDIAERLGFPV 696

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLD 188
           +I+P      + + V+ + +        + S   G  LLI++++ G E     + D    
Sbjct: 697 MIRPSFVIGGVDMQVVYEMEEFKKLASLAFSHAPGVALLIDRFLQGKEFEVDALCDGKDV 756

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
           +     P    +       S +S  + P          E+ R+     + +  +G+    
Sbjct: 757 LI----PGIFEHLDPAGVHSGDSIALFPDFSLSPREKDEMLRIVSCLSEVLNVKGLFNVQ 812

Query: 248 FLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGYSFRE 287
           F+      K++ +E N       P  + ++  P +    G +  E
Sbjct: 813 FV--RHDDKLYVIEANPRASRTVPIASKLTEIPMIDLAVGIALGE 855


>gi|225351127|ref|ZP_03742150.1| hypothetical protein BIFPSEUDO_02714 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225158583|gb|EEG71825.1| hypothetical protein BIFPSEUDO_02714 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 636

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +  +   +      A     DK+ +++V +
Sbjct: 69  LIDILQRSGADAVHPG-YGFLSEVATFAQKVIDVGAAWVGPNPKALVDLGDKITARRVAT 127

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI ++  D  +    +  
Sbjct: 128 FAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNH 187

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      D+  + T  +           + +       
Sbjct: 188 DALQGGDLNEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQ----RRNQKLVEEA 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  ++  +++  +    +A+   G+   +F+      KV++LE+N +
Sbjct: 244 PAPFLSSEVTDQLETYSRRLFEAVDYEGLGTCEFMVTEQ-GKVYFLEVNPR 293


>gi|318057066|ref|ZP_07975789.1| carbamoyl phosphate synthase large subunit [Streptomyces sp.
           SA3_actG]
 gi|318078631|ref|ZP_07985963.1| carbamoyl phosphate synthase large subunit [Streptomyces sp.
           SA3_actF]
          Length = 1104

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 86/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ +                       V  ++   +PD+   
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPEYVEKIIVKERPDVLLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+   K VV      +     
Sbjct: 89  TLGGQTALNTAISLHDAGTLEKYGVELIGANVEAINKGEDRDLFKGVVEEVRKKIGHGES 148

Query: 113 VNRFTMDSQHLI--------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                  S   +          P V++P       G      ++ +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEEELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDRNDNVVVVCSIENFDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|121535612|ref|ZP_01667418.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
 gi|121305782|gb|EAX46718.1| carbamoyl-phosphate synthase, large subunit [Thermosinus
           carboxydivorans Nor1]
          Length = 1073

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     A+ + G  V  ++ +                       +  ++A  +PD     
Sbjct: 30  GTQACQAIREEGIGVILVNSNPATIMTDANIADRVYIEPLTPDFLEEIIAKERPDGLLAT 89

Query: 58  LHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +       Q +L    +    + + A   + D+   +         VP    +
Sbjct: 90  LGGQVGLNLAVELAKQGVLAKYGVELLGTPLTAIKKAEDRELFKLTMEEIGQPVPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G  ++  +  +   + +   ++   Q+L+E+ 
Sbjct: 150 SDVASARSFAETIGYPLIVRPAYTLGGTGGGIVYNEAELVDVVTRGLKYSLIGQVLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +F    +                 + Y+ ++  A
Sbjct: 210 VAGWKEIEYEVMRDAADNCITVCNMENFDPVGIHTGDSIVVAPSQTLNDYE-YQMLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +++G  G     F  DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIRSLGIEGGCNVQFALDPNSSKYYVIEVN--PRVSRSS--ALASKATGYPIAKVASK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 47/294 (15%), Positives = 96/294 (32%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI---- 71
           AL + G +   I         D D S  L    L  +   NVL     E  +VQ      
Sbjct: 580 ALREMGIESVIINNNPETVSTDFDTSDRLYFEPLTVEDVLNVLDKEKCEGVIVQFGGQTA 639

Query: 72  ------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHL 123
                 L    +    + +     + D+ +  Q++    +P     S+      +     
Sbjct: 640 INLAGPLAKAGVKILGTSVEDIDRAEDREKFDQLLEKLNIPRPRGASVTSVDQAITKARE 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   +    +LI++Y+ GIE+    + 
Sbjct: 700 IGYPVVVRPSYVLGGRAMEIVDNETELIEYMNHAVKASAAHPVLIDRYMQGIEIEVDAIA 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D         +   +       +S  +     P  +  ++   V          +  RG+
Sbjct: 760 DGQDVFIPGIMEHIERAG---VHSGDSIAVYPPKSLSNEMIDTVVDYTRRLALGLNVRGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPE--MAA--YAGYSFREL 288
               ++       ++ LE+N       P ++ V+  P   MA     G S + L
Sbjct: 817 INIQYVI--SGGMLYVLEVNPRSSRTVPFLSKVTNVPMVNMATKVAMGQSLKSL 868


>gi|303230220|ref|ZP_07316988.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302515146|gb|EFL57120.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 1066

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKHAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L+E+ 
Sbjct: 148 NDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILVERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVDIIRYLKIEGGCNVQYALNPDSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   KP        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIYKEKPAGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    +I  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|114320877|ref|YP_742560.1| hypothetical protein Mlg_1724 [Alkalilimnicola ehrlichii MLHE-1]
 gi|114227271|gb|ABI57070.1| conserved hypothetical protein [Alkalilimnicola ehrlichii MLHE-1]
          Length = 343

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 63/317 (19%), Positives = 105/317 (33%), Gaps = 36/317 (11%)

Query: 2   AVLMG-----------GISSEREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHL 49
           AVL G           G   E EV ++   +     L   G++V  +D    +   L   
Sbjct: 13  AVLAGDPRLPYDYGVDGRFGESEVEAVRQARVALETL--GGYRVEVLDDHDRLFDRLREA 70

Query: 50  KPDLAFNVLH----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
            PDLA N            +  V A+LELLEIPYT +     ++  DK   + + +S G+
Sbjct: 71  PPDLALNFCDTGYRNQLRHEQNVPALLELLEIPYTGATPACMSICGDKALVRLLAASHGI 130

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD------------ 153
           PV     V+            P +IKP  G  S G+                        
Sbjct: 131 PVPNETFVDLTADPMVLPELYPALIKPNAGCGSQGVTPDSVVHDAQQARACLEQLALEPE 190

Query: 154 -----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                +    +       L+     G  +   +  D S    ++    S     +   + 
Sbjct: 191 RPQALIQDFLTGAEYTLGLVGNPETGFTVLPLLEIDYSRLPADLPPILSYGSKVDPNSAY 250

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             S    PA++  +    +   +    + +G R  +R D+    +      L+ N  P  
Sbjct: 251 WQSLRFKPAELAPEHQAAMVEHSVFLFERLGFRDYARFDYR-CGVDGVPRLLDANFNPTW 309

Query: 269 TPVSIFPEMAAYAGYSF 285
           +       MA +AGY +
Sbjct: 310 SYDGKMAIMAGWAGYEY 326


>gi|322689984|ref|YP_004209718.1| propionyl-CoA carboxylase subunit alpha [Bifidobacterium longum
           subsp. infantis 157F]
 gi|320461320|dbj|BAJ71940.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. infantis 157F]
          Length = 654

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 9/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILHKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   GD  L E +++        +   S   +             L+  +       PA
Sbjct: 188 DALQGGD--LKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPA 245

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 246 PFLSEEIISTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|319404296|emb|CBI77889.1| Biotin carboxylase [Bartonella rochalimae ATCC BAA-1498]
          Length = 452

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 95/285 (33%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   I    D D                       ++  +++  +  
Sbjct: 14  ALRILRACKELGIKTVAIHSTADADAMHVRLADESVCIGPPHSHDSYLNIYQIISACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE   I +         +  DK+ +K+   S G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKSLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                I+  +  +   + I  P +IK   GG   G+ V   +Q +      + S     +
Sbjct: 133 GSDNAIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVAHSEQKLLAAFKTARSEASAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N     + +       +   ++GD + +   +            ++  +      P    
Sbjct: 193 NDDSVYIEKYLEKPRHIEIQIIGDGAGNAIHLGERDCSLQR---RHQKVWEEAHSPVLNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K    +A    + +G RG    +FL+   + + +++E+N +
Sbjct: 250 AERKKIGNIVANACAK-LGYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|271498632|ref|YP_003331657.1| urea carboxylase [Dickeya dadantii Ech586]
 gi|270342187|gb|ACZ74952.1| urea carboxylase [Dickeya dadantii Ech586]
          Length = 1197

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 1/149 (0%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P ++K   GG  +G+        +     +       +      +++    
Sbjct: 144 CEQAQRIGYPVMLKSTAGGGGIGMQRCNDHDQLVDAFTRVKRLAGNNFADDGVFLEKFIA 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +        +  V          +  +       PA    D +  E+Q  A    Q
Sbjct: 204 QARHIEVQVFGDGQGNVIALGERDCSAQRRNQKVIEETPAPHLSDSVRAELQATAIRLCQ 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A+  R     ++++D  S++ ++LE+N +
Sbjct: 264 AVNYRSAGTVEYVYDESSKQFWFLEVNTR 292


>gi|116334969|ref|YP_802464.1| carbamoylphosphate synthase large subunit [Candidatus Carsonella
           ruddii PV]
 gi|116235250|dbj|BAF35098.1| carbamoylphosphate synthase large subunit [Candidatus Carsonella
           ruddii PV]
          Length = 965

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 29/300 (9%), Positives = 95/300 (31%), Gaps = 32/300 (10%)

Query: 18  SGKACASALEDAGFKVSQ-----------------IDVDR----SVGLVLAHLKPDLAFN 56
           SG      L++  F V                   + +++    S+  ++   KPD    
Sbjct: 24  SGSQSCKTLKEENFNVILLNSNPATIMTDYEIANTVYIEKINKNSLIKIVQIEKPDFILP 83

Query: 57  VLHGN---FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            + G          + +     E             +  ++   +++++  +    S+++
Sbjct: 84  TMGGQTALNCILDFINSEYNFPENKILGINKKILMNAESRLIFYKLINNLNLKCPDSVII 143

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               ++  + ++ P +I+P      LG  +   ++S+ L L  +      +++ +++ + 
Sbjct: 144 KISNLEEINNVNFPCIIRPSFTLGGLGSGIAYNNKSLNLILKNAF--LFSNEVSLDKSII 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G +     +   + +   +     +     +      +          +          +
Sbjct: 202 GWKEFELELLIDNYNNIIVICCIENIDPVGIHTGDSITITPAQTISDKEYQNMRDSSFII 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI-FPEMAAYAGYSFRELLLWM 292
                   G +   F  +P++  +  +E+N +     +S      +   GY   ++   +
Sbjct: 262 LKSIGLKGGGANIQFAINPINGDLIVIEMNPR-----ISRSAALSSKATGYPIAKISTKL 316


>gi|23336173|ref|ZP_00121399.1| COG4770: Acetyl/propionyl-CoA carboxylase, alpha subunit
           [Bifidobacterium longum DJO10A]
 gi|189440493|ref|YP_001955574.1| acetyl/propionyl-CoA carboxylase subunit alpha [Bifidobacterium
           longum DJO10A]
 gi|239620958|ref|ZP_04663989.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
 gi|189428928|gb|ACD99076.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum DJO10A]
 gi|239516059|gb|EEQ55926.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain protein
           [Bifidobacterium longum subsp. infantis CCUG 52486]
          Length = 654

 Score = 55.6 bits (132), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 41/229 (17%), Positives = 79/229 (34%), Gaps = 9/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +E     +      A     DK+ +++V  
Sbjct: 69  LIDILHKTGADAVHPG-YGFLSEVPSFAQKVEDAGAIWVGPHHTALVDLGDKITARRVAL 127

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P     +   R  +D  H    P ++K   GG   GI V+  D+ +    +  
Sbjct: 128 RAKVPPVPGLSEPVTDVRTLLDFAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNH 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            +   GD  L E +++        +   S   +             L+  +       PA
Sbjct: 188 DALQGGD--LKEYFIEKFVDKARHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPA 245

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +I   ++  +      +G  G+   +F+  P + KV++LE+N +
Sbjct: 246 PFLSEEIISTLEEYSRRLFTTVGYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|126739914|ref|ZP_01755605.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           SK209-2-6]
 gi|126719146|gb|EBA15857.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           SK209-2-6]
          Length = 1108

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   +PD    
Sbjct: 19  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE  ++    +   A  ++ D+   +  +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALEEMGVLEKFDVEMIGATRDAIEMAEDRKLFRDAMDRLGIENPRATI 138

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     +                   I  P +I+P       G  V    +         
Sbjct: 139 VTAPKNEDGSADLTEGVRIALEALEDIGLPAIIRPAFTMGGTGGGVAYNREDYEHFCRTG 198

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 199 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENIDPMGVHTGDSITVAPALT 258

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 259 LTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPDDGRMVVIEMN--PRVSRSS--ALA 314

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 315 SKATGFPIAKIAAKL 329



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 108/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 575 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMINCNPETVSTDYDTSD 627

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 628 RLYFEPLTFEHVMEILRTEQENGTLHGVIVQFGGQTPLKLANSLEEHGIPILGTSPDAID 687

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +++V++ G+    + + +           I  P VI+P        + +++ 
Sbjct: 688 LAEDRERFQELVNNLGLKQPHNGIASTDEEALAIAEEIGFPLVIRPSYVLGGRAMEIVRD 747

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 748 MDQLKRYIAEAVVVSGDSPVLLDSYLSGAVELDVDAICDGDQVHVAGIMQHIEEAG---V 804

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  ++ +EV+       +A+   G+    F        +F +E+N +
Sbjct: 805 HSGDSACSLPPYSLSDEVLEEVKAQTHALAKALNVVGLMNIQFAI--KDGVIFLIEVNPR 862

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 863 ASRT----VPFVAKAT 874


>gi|7157937|gb|AAF37348.1| D-alanine:D-alanine ligase [Tetragenococcus solitarius]
          Length = 200

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/159 (22%), Positives = 71/159 (44%), Gaps = 5/159 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+G+      + +   L+++    +  
Sbjct: 44  LKSQWKENPKKIFEQCEGTLLYPMFVKPANMGSSVGMAKANDRKELQEALIEAY--RYDS 101

Query: 165 QLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           +++IEQ ++  E+   +    D    +    V +  FY Y  KY   N    +PA+IP +
Sbjct: 102 RVVIEQSIEAREIEVAILGNEDVRTTLPGEIVKEEAFYDYNSKYIDNNIKMQIPAQIPEE 161

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           + ++ +  A +A+ ++G RG+SR DF       ++F  E
Sbjct: 162 VQQKAREYATIAYTSLGGRGLSRCDFFLT-NKNELFLNE 199


>gi|328461948|gb|EGF34149.1| carbamoyl phosphate synthase large subunit [Lactobacillus rhamnosus
           MTCC 5462]
          Length = 313

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/168 (14%), Positives = 56/168 (33%), Gaps = 9/168 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   + ++ S +H   +LI+ Y+ G E    
Sbjct: 68  ADKIGYPVLVRPSYVLGGRAMEIVHDADELASYIDRAVSVSHDHPVLIDHYLVGKECEVD 127

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    V    +   +           +     P     DI  ++        +A+ C
Sbjct: 128 CISDGETVVLPGIMEHIERAGIHSG---DSMAVYPPQTFSQDIIDQITDATIKLSRALNC 184

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G+    F+      K + +E+N +   T     P ++        ++
Sbjct: 185 IGLMNVQFIIHQ--GKAYVIEVNPRASRT----VPFLSKVTNVKLAQV 226


>gi|325285474|ref|YP_004261264.1| pyruvate carboxylase [Cellulophaga lytica DSM 7489]
 gi|324320928|gb|ADY28393.1| pyruvate carboxylase [Cellulophaga lytica DSM 7489]
          Length = 1150

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI+  + +     ++   +         +++       
Sbjct: 150 AKRIGYPIMLKAASGGGGRGMRVIRTQEELEKAFPEARRESLNAFGDDTVFLEKFVENPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +  T   +         ++          P+   P +    + + A    +A+ 
Sbjct: 210 HIEVQIVADTHGNMVHLYERDCSVQRRYQKVIEFAPSIGLPQETRDSLYKYAIDICKAVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 270 YNNIGTVEFLVD-DDGSIYFIEVNPR 294


>gi|303231601|ref|ZP_07318325.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302513718|gb|EFL55736.1| carbamoyl-phosphate synthase, large subunit [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 1066

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKHAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVDIIRYLKIEGGCNVQYALNPDSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   KP        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEKPAGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    +I  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|242084122|ref|XP_002442486.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
 gi|241943179|gb|EES16324.1| hypothetical protein SORBIDRAFT_08g020810 [Sorghum bicolor]
          Length = 752

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 20/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ ++++       +L +         +    ++       
Sbjct: 201 ADKIGYPVLIKPTHGGGGKGMRIVERPDEFVDAVLSAQREAAASFGVNTLLIEKYITQPR 260

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +                     L+          PA      ++  +   A  A +A+G
Sbjct: 261 HVEVQVFGDQHGNAIYLYERDCSLQRRHQKIIEEAPAPNVTAEFRSHIGGAAVSAAKAVG 320

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+ D LS + +++E+N +              +       G   ++L+ W +
Sbjct: 321 YYNAGTVEFIVDTLSGEFYFMEMNTR----------LQVEHPVTEMIVG---QDLVEWQI 367

Query: 294 EDASCLR 300
             A+  R
Sbjct: 368 RVANGER 374


>gi|224085521|ref|XP_002307604.1| predicted protein [Populus trichocarpa]
 gi|222857053|gb|EEE94600.1| predicted protein [Populus trichocarpa]
          Length = 760

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 22/160 (13%), Positives = 51/160 (31%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              S             I  P +IKP  GG   G+ +++         L +         
Sbjct: 172 YHGSEQDIELMKSEADKIGYPILIKPTHGGGGKGMRIVQSPNEFVDSFLGAQREAAASFG 231

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK- 225
           +    ++        +           V         ++          PA   ++ ++ 
Sbjct: 232 INTILLEKYITKPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNVMNDFRS 291

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + + A  A +A+G       +F+ D +S + +++E+N +
Sbjct: 292 HLGQAAVSAAKAVGYHNAGTVEFIVDTVSGQFYFMEMNTR 331


>gi|167465045|ref|ZP_02330134.1| carbamoyl phosphate synthase large subunit [Paenibacillus larvae
           subsp. larvae BRL-230010]
          Length = 994

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 35/290 (12%), Positives = 91/290 (31%), Gaps = 30/290 (10%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A++ AG++   I+ +                       V  V+   KP        G   
Sbjct: 512 AIQSAGYEAVIINNNPETVSTDFSTSDRLYFEPLYLEDVLNVIEREKPIGVIVQFGGQTA 571

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         + I  T    +  A +  +  +         P   ++      + +   
Sbjct: 572 INLAEPLAKAGVRILGTDLKNIDRAENRKEFEALLTALDIAQPPGGTVTNVDEAVGTASQ 631

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
              P +++P        + ++  D+ +   +  +   N    +LI++Y+ G E+    + 
Sbjct: 632 FGYPVLVRPSYVLGGRAMEIVYSDEELLSYMEYAVKINPEHPVLIDRYMLGKEVEVDAIC 691

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  +     P  +  DI +++  +     + +   G+
Sbjct: 692 DKETVLIPGIMEHVERAG---VHSGDSIAVYPPQTLSDDIKRKIVEITTKIAKGLEIVGL 748

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               F+      KV+ +E+N +   T     P ++         +   ++
Sbjct: 749 VNIQFVIFQ--DKVYVIEVNPRSSRT----VPFLSKVTNIPMANVATRVI 792



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 80/255 (31%), Gaps = 11/255 (4%)

Query: 44  LVLAHLKPDLAFNVLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSK 97
            ++   +PD     L G  G +       +     E + +  T    +  A   D  R  
Sbjct: 1   QIIRQEQPDGLLPTLGGQTGLNMAVELAKMGVLERENVRLLGTQLDAIERAEDRDLFREL 60

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  VP    +      ++    I  P +++P       G  +   ++ +   +   
Sbjct: 61  MKELEQPVPESTIVTTVEEAVNFAGEIGYPIIVRPAYTLGGTGGGICGTEEELMEVVSSG 120

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             ++   Q L+E+ + G                 I V   +       ++  +       
Sbjct: 121 IRYSPIGQCLVEKSIAG-MKEVEYEVMRDKHDNCIVVCNMENLDPVGVHTGDSIVVAPSQ 179

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +    Y+ ++  +    +A+   G     F  DP S + + +E+N  P ++  S     
Sbjct: 180 TLSDREYQMLRSASLKIIRALNIEGGCNVQFALDPQSYQYYVIEVN--PRVSRSS--ALA 235

Query: 278 AAYAGYSFRELLLWM 292
           +   GY   ++   +
Sbjct: 236 SKATGYPIAKMAAKI 250


>gi|162451035|ref|YP_001613402.1| putative D-alanine--D-alanine ligase A [Sorangium cellulosum 'So ce
           56']
 gi|161161617|emb|CAN92922.1| putative D-alanine--D-alanine ligase A [Sorangium cellulosum 'So ce
           56']
          Length = 378

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 101/299 (33%), Gaps = 19/299 (6%)

Query: 19  GKACASALEDA-GFKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-LEL 74
            ++  +AL  A G +V+   V R   V   +   +PD+ FN+     G+          L
Sbjct: 44  AESVLAALAAAPGVRVAHRPVLRPSEVLAAIGDHRPDVIFNLCEALDGDSRHEVMCAWLL 103

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             +    +G    AL     +++         V     V     D    ++ P ++KP +
Sbjct: 104 AGLDLRFTGSDHVALRSCLHKTEANRILARAGVRVPATVRVEGPDRIPEVAFPVIVKPER 163

Query: 135 GGSSLGIIVIKKDQS--IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
              S+GI             D + +        +++++YV G E++  ++G  +  V   
Sbjct: 164 EDGSMGIDRGSVVHDRRALRDQVAAVVAQCRQPVVVQRYVHGREISVSLLGWPTPRVLPP 223

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKI------------PLDIYKEVQRLAFLAHQAIGC 240
                        +     +   P                    + V  +   A + +G 
Sbjct: 224 GEVTFQGLPEGHPHVVTYESKWRPETAASIGTPSSAAVLRPLELRRVVAVGRRAFEVLGL 283

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           R   R D   D        +++N    ++P + F   AA AG S+ +++  ++  A   
Sbjct: 284 RDYGRVDVRLDER-GTPHVIDVNPNCDLSPDAGFARAAARAGLSYADVVWEILRAALAR 341


>gi|15888655|ref|NP_354336.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           tumefaciens str. C58]
 gi|15156385|gb|AAK87121.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           tumefaciens str. C58]
          Length = 448

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         +  DK+ +KQ     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRIMGDKITAKQTAQELGIPVVPGS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     ++    I  P +IK   GG   G+ V K +  +   +  + S      G+ 
Sbjct: 135 DGEVKPENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLEDAVATARSEAAAAFGND 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      V      +    AV   +      +             + ++   
Sbjct: 195 AVYMEKYLGKPRHIEVQVFGDGEG--NAVHLGERDCSLQRRHQKVLEEANSPALTVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  +   A + +  RG    +FL+   + + +++E+N +
Sbjct: 253 KIGEICADAMRKLKYRGAGTIEFLY--ENGEFYFIEMNTR 290


>gi|23013681|ref|ZP_00053549.1| COG0458: Carbamoylphosphate synthase large subunit (split gene in
           MJ) [Magnetospirillum magnetotacticum MS-1]
          Length = 1085

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+D G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGVQACKALKDEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +      ILE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADMGILEKFGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLESPKSRM 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V   +   D+   +  P +I+P    +  G  +          +    + +   ++L+E+
Sbjct: 149 VKTLQEARDALDFVGLPAIIRPSFTLAGTGGGIAYNVAEYEHIVSGGLAASPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPKDGRMTVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/172 (14%), Positives = 61/172 (35%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + ++   +++   ++++   +  D +LI+ Y  D IE+  
Sbjct: 714 AEKIGYPVVIRPSFVLGGRAMQIVYDHEALERYMVEAVKVSGDDPVLIDFYLKDAIEVDV 773

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +      E++R      +A+ 
Sbjct: 774 DALCDGNQVYVAGIMQHIEEAGIHSG---DSACSLPPYSLDKATIAELERQTAAMAKALN 830

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    +        ++ LE+N +   T     P +A   G    ++   
Sbjct: 831 VVGLMNCQYAI--KDGDIYILEVNPRASRT----VPFVAKATGVPIAKIAAR 876


>gi|144897959|emb|CAM74823.1| carbamoyl-phosphate synthase, large chain [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 1083

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGVQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    +     A + D++  +  +   G+    S +
Sbjct: 89  TMGGQTALNTAMKLADDGTLEKYGVEMIAAKRDVIAKAEDRLLFRDAMDKIGLDSPKSRV 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V       + L     P +I+P    +  G  +    +     +    + +   ++L+E+
Sbjct: 149 VRTLQEARESLDFVGLPAIIRPSFTLAGTGGGIAYNIEEYENIVSGGLAASPVHEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPKNGRMTVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 63/173 (36%), Gaps = 10/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + ++   +++   + ++   +  D +LI+ Y  + IE+  
Sbjct: 714 ADRIGYPVVIRPSFVLGGRAMQIVYDHEALERYMKEAVVVSGKDPVLIDFYLKNAIEVDV 773

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  D   E++R      +A+ 
Sbjct: 774 DALADGTDVFVAGIMQHIEEAGIHSG---DSACSLPPYSLDDDTIAELERQTVALAKALN 830

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    +        ++ LE+N +   T     P +A   G    ++   +
Sbjct: 831 VRGLMNVQYAV--QDGVIYILEVNPRASRT----VPFVAKATGIPIAKIAARI 877


>gi|255318471|ref|ZP_05359704.1| urea carboxylase [Acinetobacter radioresistens SK82]
 gi|262378700|ref|ZP_06071857.1| urea carboxylase [Acinetobacter radioresistens SH164]
 gi|255304463|gb|EET83647.1| urea carboxylase [Acinetobacter radioresistens SK82]
 gi|262299985|gb|EEY87897.1| urea carboxylase [Acinetobacter radioresistens SH164]
          Length = 1201

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 61/178 (34%), Gaps = 16/178 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ ++   + +    +  S     +      Y++       
Sbjct: 147 ADRIGYPVMLKSTAGGGGIGMRLVWNAEELKDAYVTVSYLAQANFKDAGLYLEKFVQNAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +           V         ++  +       PA    D  +  +Q +A    Q++ 
Sbjct: 207 HIEVQIFGDGNGLVLALGERDCSVQRRNQKVIEETPAPHLNDTQRAYIQNVAIQLMQSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            R     +F+ D  +++ ++LE+N +     G+T            G    +L+ WMV
Sbjct: 267 YRSAGTVEFVMDTDTQEFYFLEVNTRLQVEHGVTE--------QVFGV---DLVEWMV 313


>gi|219130749|ref|XP_002185520.1| CPS III, carbamoyl-phosphate synthase mitochindrial precursor
           [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403051|gb|EEC43007.1| CPS III, carbamoyl-phosphate synthase mitochindrial precursor
           [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1463

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/332 (12%), Positives = 97/332 (29%), Gaps = 55/332 (16%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------- 39
           GG S     E +    SG     AL++ G +V  ++ +                      
Sbjct: 383 GGTSIGQAGEFD---YSGGQAIKALKEEGLEVVLMNPNIASVQTNTDDKSASKADHVFFL 439

Query: 40  ----RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSM 91
                 V  V+   KPD     + G                E   +    + I A   + 
Sbjct: 440 PVTPEFVEEVIKKEKPDGVIISMGGQTALNCAVQMHESGTFEKYGVKILGTQIPAVINTE 499

Query: 92  DKMRSKQVVS--SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D+      ++  +  +    +       ++    +  P +I+       LG  +   +  
Sbjct: 500 DRQLFSDRLNEINEKIAESYTAQTIPEAVEHAKKVGYPLMIRSAFALGGLGSGICVDEDH 559

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +     ++ S     Q+L+E+ + G                 + V   + +     ++  
Sbjct: 560 LKDMAKKALSV--SPQILVEKSMKGW-KEVEYEVVRDTHDNCVTVCNMENFDPLGIHTGD 616

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +        +  + Y  ++  A    + +G  G     +   P S +   +E+N +  ++
Sbjct: 617 SIVMAPSQTLSNEEYHMLRETAIKVVRHLGIVGECNIQYALHPESLEYAIIEVNAR--LS 674

Query: 270 PVS-------IFPEMAAYA----GYSFRELLL 290
             S        +P     A    G    E++ 
Sbjct: 675 RSSALASKATGYPLAFVAAKLCLGIPLTEVVN 706


>gi|149370954|ref|ZP_01890549.1| pyruvate carboxylase [unidentified eubacterium SCB49]
 gi|149355740|gb|EDM44298.1| pyruvate carboxylase [unidentified eubacterium SCB49]
          Length = 1150

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 77/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + L L     D      +G   E+       +   I +            DK+ 
Sbjct: 63  LDIDAIIKLALDK-GVDAIHPG-YGFLSENSNFARACKENGIIFIGPDPTVMDALGDKIM 120

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K++   C VP   S   +  T++        I  P ++K   GG   G+ VI +   + 
Sbjct: 121 AKKIAEKCNVPTINSNKKDLTTVEIALEEAKNIGYPVMLKAASGGGGRGMRVIHQPDDLE 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + +           +++        +    +      +         ++      
Sbjct: 181 KSFDSAKNEALNSFGDDTMFLEKYVENPKHLEVQIVADNHGNIRHLFERDCSVQRRHQKV 240

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   +  ++ + + + A    + +    +   +FL D     ++++E+N +
Sbjct: 241 VEVAPSFNVSQEVKEALYKYAIAIAEEVNYNNVGTVEFLVDQQDN-IYFIEVNPR 294


>gi|1255019|gb|AAB17900.1| D-alanine:D-alanine ligase [Enterococcus pseudoavium]
          Length = 200

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 62/157 (39%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  IKP   GSS+GI   +  + +   L ++  ++   
Sbjct: 44  LKNQWKENPKQVFDKCEGTLLYPMFIKPANMGSSVGISRAENREELQNALKEAYRYDSRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V +  FY Y  KY        +PA++P ++ 
Sbjct: 104 LVEQGIDAREIEVAVLGNDDVRTTLPGEVVKEVAFYDYNAKYIDNTIQMAIPAEVPKEVM 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ +  A LA+  +G  G+SR DF       ++F  E
Sbjct: 164 QKAREYAKLAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|319411906|emb|CBQ73949.1| probable URA2-multifunctional pyrimidine biosynthesis protein
           [Sporisorium reilianum]
          Length = 2289

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 499 SGSQAIKALKEEGIYTVLINPNIATIQTSSGLADKVYFLPVTPEFVLKVIEHERPDGIYC 558

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
              G    +  ++   EL ++     G     +   + R     +   +    +      
Sbjct: 559 TFGGQTALNVGIKIKDELPKMGVRVLGTPIETIITTEDRDLFARAMEQIGEKCAPSAAAN 618

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + +   I  P +++       LG       + +    L S+++ +  Q+L+E+ +
Sbjct: 619 NWDEALAAAQNIGFPVIVRAAFALGGLGSGFANNVEELRK--LCSAAFANSPQVLVEKSM 676

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  D Y  ++  A 
Sbjct: 677 KGW-KEVEYEVVRDCRNNCITVCNMENFDPLGVHTGDSIVIAPSQTLSDDDYNMLRTTAV 735

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P  R+   +E+N +  ++  S     +   GY   
Sbjct: 736 NVIRHLGVVGECNIQYALNPHKREYCIIEVNAR--LSRSS--ALASKATGYPLA 785


>gi|48477971|ref|YP_023677.1| carbamoyl phosphate synthase large subunit [Picrophilus torridus
           DSM 9790]
 gi|48430619|gb|AAT43484.1| carbamoyl-phosphate synthase [Picrophilus torridus DSM 9790]
          Length = 1051

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 95/303 (31%), Gaps = 35/303 (11%)

Query: 18  SGKACASALEDAGFKVS----------------------QIDVDRSVGLVLAHLKPDLAF 55
           SG     AL + G +                         I+ D +V  ++     D   
Sbjct: 28  SGSQACLALREEGIRTVLLNSNPATIQTDRDIADRIYIEPIEPD-TVIEIIKREGIDSIL 86

Query: 56  NVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCP 109
               G  G +         IL    I    + + +  L+ D+ +   ++   +  V    
Sbjct: 87  PSTGGQVGLNLVVLLDKLGILSEYNIRVLGTPVKSIELAEDRKKFFNLMRDINEPVISSY 146

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +I  + +  D +++   P +++        G  VI     + L+  +         + ++
Sbjct: 147 TITKDNYINDVENIKRYPLILRTGFSLGGSGGTVINSRDEL-LNYCKEYFLTSDLDIEVD 205

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G             +   I+V   +       ++  +        +  D Y+ +++
Sbjct: 206 ESLLG-LKELEYEMIRDNNGNCISVCNMENLDPMGIHTGESIVVTPSQTLSNDDYQMLRK 264

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     AIG  G     F  D    + + +E+N +   T  S     +  +GY    + 
Sbjct: 265 AAIHVVSAIGVIGACNIQFALDQKRNEYYVVEVNPR---TSRSS-ALASKASGYPIARIS 320

Query: 290 LWM 292
             +
Sbjct: 321 TKI 323



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 90/291 (30%), Gaps = 35/291 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S KA   A++  G++   +         D D              V  ++   +P     
Sbjct: 566 SVKAI-KAIKSLGYQAIMVNSNPETVSTDFDVSDRLYFEPITLEHVSNIIYRERPAGIII 624

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVN 114
              G  G++  +        I        +  +  +++   +++S   +     I     
Sbjct: 625 QFSGQTGQNIAMDLNRIFNGIILGTQP-ESINIIENRVEFSKLLSRLNIKQPDYIEVNNI 683

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-D 173
               +   +I  P +I+         + +I     +   + +      G  +LI +Y+ +
Sbjct: 684 NDVDERIKMIKLPVIIRSSFIIGGRAMDIIYDVDDLKSRVSEVFRDMPGYPVLISEYISN 743

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             E+    + D             +            S  + P     DI  +++ +   
Sbjct: 744 ATEMDVDFVSDGEKFQIAGISVHVEEAGTHSG---DASMILGPRFPSDDIKMKIENIIDK 800

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             + +  +GIS         + +V+ +E+N +   +  S  P ++   G  
Sbjct: 801 LVKELKLKGISNLQIAV--KNDEVYIIELNAR---SSRS-VPFVSKATGID 845


>gi|268680466|ref|YP_003304897.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sulfurospirillum deleyianum DSM 6946]
 gi|268618497|gb|ACZ12862.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Sulfurospirillum deleyianum DSM 6946]
          Length = 481

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/244 (15%), Positives = 83/244 (34%), Gaps = 16/244 (6%)

Query: 32  KVSQIDVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
              ++ +D +++  +   +  D      +G   E+           I +        AL 
Sbjct: 58  DPIRVYLDYKNIVEIAKKVGADAIHPG-YGFLSENPDFAQHCIDNGIIFIGPKPEHIALF 116

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DKM SK  + + GVPV       I      +     I  P +IK   GG   G+ ++KK
Sbjct: 117 GDKMASKVAMKAVGVPVIEGTDTPITDINEAIKIAKEIGFPVIIKAAFGGGGKGMRIVKK 176

Query: 147 DQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           ++                +  GD  + +   +   +   ++ D   +V  +         
Sbjct: 177 EEEFVAMFEAATKEAERFFGRGDAFIEKYLSNPRHIEVQIVADKYGNVIHLGERDCSIQR 236

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +  +  L   +  ++ +  ++        +G   +   ++L D      +++E
Sbjct: 237 KHQKVVEIAPSPRLNDTVRKELLRTSKKAMIK----LGYESVGTVEYLVDEEDN-FYFIE 291

Query: 262 INVQ 265
           +N +
Sbjct: 292 MNTR 295


>gi|312216071|emb|CBX96023.1| similar to 3-methylcrotonyl-CoA carboxylase subunit alpha
           [Leptosphaeria maculans]
          Length = 787

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 37/212 (17%), Positives = 70/212 (33%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           I +      A      K  SK +++  GVP  P    +    
Sbjct: 174 YGFLSENPNFARKCTDAGITFIGPPWQAIESMGSKSESKDIMTKAGVPCIPGYHGSNQDP 233

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           D        I  P ++K +KGG   G+ +++ +      L  + S            V+ 
Sbjct: 234 DHLKAEALKIGYPVLLKAVKGGGGKGMRIVQNEAEFFDQLASAKSEARNSFGDEVMLVEK 293

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
              T   +                     ++          PA    + I +++   A  
Sbjct: 294 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLKEDIRQDIWEKARQ 353

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A  A+G  G    +F+FD  + + F++E+N +
Sbjct: 354 AALAVGYEGAGTVEFIFDNETGQFFFMEMNTR 385


>gi|332296402|ref|YP_004438325.1| Pyruvate carboxylase [Thermodesulfobium narugense DSM 14796]
 gi|332179505|gb|AEE15194.1| Pyruvate carboxylase [Thermodesulfobium narugense DSM 14796]
          Length = 485

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/258 (17%), Positives = 91/258 (35%), Gaps = 32/258 (12%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+ +    +    + +            DK+ +K+      VPV P I 
Sbjct: 79  NAVHPGWGFLSENHIFAQRVIDSGLIWIGPKPEVIKAMGDKIEAKKWAKRANVPVIPGID 138

Query: 113 VNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
             +          +  IS P ++K   GG   G++ +++ + I     Q  S     +  
Sbjct: 139 NAKSYEEIIDWMKEEDISFPILVKASAGGGGKGMLKVERAEDIQNAFTQVKSEALKSFGD 198

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              L+ +    G  +   ++ D    +  +   +        K      +  L   +  +
Sbjct: 199 DKVLVEKYIERGRHIEVQIIADEYGSICHLFERECTIQRRNQKIIEETPSPSLDDTLRQE 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMA 278
           I       A    + IG       +FL+D  ++K ++LE+N +     G+T +S      
Sbjct: 259 ICF----TAVRFMREIGYTSAGTVEFLYDSNTKKFYFLEVNTRLQVEHGITELS------ 308

Query: 279 AYAGYSFRELLLWMVEDA 296
              G    +++  M++ A
Sbjct: 309 --TGL---DIVSLMIDIA 321


>gi|226313446|ref|YP_002773340.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226096394|dbj|BAH44836.1| probable biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 451

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ + + +  +      +       + +    L +      
Sbjct: 147 AVSIGYPVMLKASAGGGGIGMHICRDEAELRQAYQSAKGRAKAYFGNDAMYLEKYVERPH 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +V  +   +        +             +     + +   A  A 
Sbjct: 207 HIEVQVVADQDGNVIHLLERECSIQ----RRHQKVLEESPSPFLSTATRELLCDAAVTAA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G+   +F+ D      ++LE+N +
Sbjct: 263 KAVGYSGVGTVEFIVDEQKN-FYFLEMNTR 291


>gi|167844892|ref|ZP_02470400.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei B7210]
          Length = 396

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|254190637|ref|ZP_04897144.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157938312|gb|EDO93982.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 464

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 87  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 146

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 147 EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 206

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 207 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 266

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 267 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 326

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 327 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 354


>gi|76811548|ref|YP_332759.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710b]
 gi|76581001|gb|ABA50476.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710b]
          Length = 464

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 87  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 146

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 147 EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 206

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 207 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 266

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 267 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 326

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 327 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 354


>gi|53718746|ref|YP_107732.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei K96243]
 gi|126452032|ref|YP_001065475.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106a]
 gi|167737742|ref|ZP_02410516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 14]
 gi|167814900|ref|ZP_02446580.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 91]
 gi|167823345|ref|ZP_02454816.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 9]
 gi|167893433|ref|ZP_02480835.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 7894]
 gi|167910125|ref|ZP_02497216.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 112]
 gi|167918155|ref|ZP_02505246.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei BCC215]
 gi|226195393|ref|ZP_03790982.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237811485|ref|YP_002895936.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei MSHR346]
 gi|242316624|ref|ZP_04815640.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106b]
 gi|254181277|ref|ZP_04887874.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1655]
 gi|254195114|ref|ZP_04901543.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei S13]
 gi|254261804|ref|ZP_04952858.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710a]
 gi|81824802|sp|Q63VY4|PURT_BURPS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171855120|sp|A3NT04|PURT_BURP0 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172046642|sp|Q3JUJ4|PURT_BURP1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52209160|emb|CAH35104.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei K96243]
 gi|126225674|gb|ABN89214.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106a]
 gi|169651862|gb|EDS84555.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei S13]
 gi|184211815|gb|EDU08858.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1655]
 gi|225932595|gb|EEH28593.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei Pakistan 9]
 gi|237506528|gb|ACQ98846.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei MSHR346]
 gi|242139863|gb|EES26265.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1106b]
 gi|254220493|gb|EET09877.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 1710a]
          Length = 404

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|291613919|ref|YP_003524076.1| phosphoribosylglycinamide formyltransferase 2 [Sideroxydans
           lithotrophicus ES-1]
 gi|291584031|gb|ADE11689.1| phosphoribosylglycinamide formyltransferase 2 [Sideroxydans
           lithotrophicus ES-1]
          Length = 401

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 78/274 (28%), Gaps = 26/274 (9%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D   +                    +  ++   KPD+    +
Sbjct: 26  GKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVINMADGAALRALIEKEKPDVIVPEI 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +      ++ +  T      +       R                       
Sbjct: 86  EAIATEMLVQIEKEGVVRVIPTARAAQLTMNREGIRRLAAETLQLPTSPYKFADSLEDLR 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIEL 177
            +  +I  P +IKP+   S  G   +     +      ++S +  +Q  +I +     + 
Sbjct: 146 AATEVIGYPCIIKPVMSSSGKGQSKVDDASEVKAAWDYAASGSRVNQGRVIVEGFIDFDY 205

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +   ++                ++          P  +     +  + +A    + 
Sbjct: 206 EITQLTVRAIRENGGTETHFCDPIGHVQVHGDYVESWQPMAMSSLALQRSRDIAKKVTEE 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +G  GI   +        +V++ E++ +P   GM
Sbjct: 266 LGGLGIFGVELFV--KGDQVWFSEVSPRPHDTGM 297


>gi|160885748|ref|ZP_02066751.1| hypothetical protein BACOVA_03752 [Bacteroides ovatus ATCC 8483]
 gi|156108561|gb|EDO10306.1| hypothetical protein BACOVA_03752 [Bacteroides ovatus ATCC 8483]
          Length = 1075

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+      ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVHKLNEINVKNIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 147 VENVEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|148242079|ref|YP_001227236.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           RCC307]
 gi|147850389|emb|CAK27883.1| Carbamoylphosphate synthase large subunit [Synechococcus sp.
           RCC307]
          Length = 1100

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  ++ + +                     V  V+   KPD    
Sbjct: 29  SGTQACKALRADGFEVVLVNSNPASIMTDPEMADRTYIEPLTPDVVRRVIELEKPDALLP 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +          LE   +    + + A   + D+   KQ +   GV VCPS  
Sbjct: 89  TMGGQTALNLAVSLAKDGTLERHGVELIGANLAAIEKAEDRDLFKQAMERIGVGVCPSGI 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         + S P +I+P       G  +    +            +  DQ+LIE
Sbjct: 149 ATSMEEAEAVGNQIGSYPRIIRPAFTLGGSGGGIAYNPEEFRALCNSGLEASPVDQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +          +  +   +
Sbjct: 209 KSLLGWKEFELEVMRDTADNVVIICSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SLAIIREIGVDTGGSNIQFAINPANGDVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327



 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 85/275 (30%), Gaps = 19/275 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI-- 84
           +   F+   +     V  V+   +PD       G       +  +  L       +G   
Sbjct: 629 DRLYFEPLTL---EDVLNVIEAERPDGVIVQFGGQTPLKLALPLLRWLESAQGQTTGCRI 685

Query: 85  -----LASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 +  L+ D+ + + V+    +    +               I  P V++P     
Sbjct: 686 WGTSPQSIDLAEDREQFEGVLRKLQIRQPANGIARSEDEARAIAERIGYPVVVRPSYVLG 745

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
              + V+     +   + ++   +    +LI+QY++       V          +     
Sbjct: 746 GRAMEVVFGADELDRYMREAVQVDPDQPVLIDQYLEN-ATEVDVDALCDESGQVVIGGLM 804

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
           +       +S  ++  +    +  +    +++ +    +++  +G+    F       +V
Sbjct: 805 EHIEPAGIHSGDSACCLPSVSLKPEALATIRQWSADLARSLQVQGLINLQFAVCQ--DEV 862

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           + +E N +   T     P +A   G    +L   +
Sbjct: 863 YIIEANPRASRT----VPFVAKATGVPLAKLASRL 893


>gi|293397108|ref|ZP_06641382.1| urea carboxylase [Serratia odorifera DSM 4582]
 gi|291420579|gb|EFE93834.1| urea carboxylase [Serratia odorifera DSM 4582]
          Length = 1245

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 57/182 (31%), Gaps = 18/182 (9%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+       ++                    +V+        + 
Sbjct: 188 IGYPVMLKSTAGGGGIGLSRCDDQAALREAYDGVKRMGQQFFRDAGAFVERCVERARHVE 247

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
                  +  V         L+  +       PA    +   + + R A    +++  R 
Sbjct: 248 VQIFGDGQGRVLALGERDCSLQRRNQKVVEETPAPNLPEATRQALHRAAIALGESVNYRS 307

Query: 243 ISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D    + ++LE+N       P +T         A  G    +L+  M++ A+
Sbjct: 308 AGTVEFIYDGERDEFYFLEVNTRLQVEHP-VTE--------AVTGL---DLIECMLQVAA 355

Query: 298 CL 299
             
Sbjct: 356 GD 357


>gi|126663492|ref|ZP_01734489.1| carbamoyl-phosphate synthase large subunit [Flavobacteria bacterium
           BAL38]
 gi|126624440|gb|EAZ95131.1| carbamoyl-phosphate synthase large subunit [Flavobacteria bacterium
           BAL38]
          Length = 951

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 43/311 (13%), Positives = 96/311 (30%), Gaps = 37/311 (11%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39
            V++G      G   E + S        +A ++ G++   I         D D       
Sbjct: 571 VVVLGSGPNRIGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYF 627

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  +  ++ H KP+     L G        +     ++I  T    L  A    + 
Sbjct: 628 EPVFWEHIYDIIQHEKPEGVIVQLGGQTALKLAEKLSKYGIKILGTSFDALDLAEDRGRF 687

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                  +   P                 +  P +++P       G+ ++   Q +   +
Sbjct: 688 SDLLTELNIPFPKFGIAESAEEASVLADTLDFPLLVRPSYVLGGQGMKIVINKQELEEHV 747

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           +       G++LL++ Y+DG  +          D     +   +       +S  ++  +
Sbjct: 748 IDLLKSIPGNKLLLDHYLDG-AIEAEADAICDADGNVYIIGIMEHIEPCGVHSGDSNATL 806

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
            P  +   + ++++       +A+   G+    F        V+ +E N +   T     
Sbjct: 807 PPFNLGEFVMQQIKDHTHKIARALQTVGLINIQFAI--KDDTVYIIEANPRASRT----V 860

Query: 275 PEMAAYAGYSF 285
           P +A   G  +
Sbjct: 861 PFIAKAYGEPY 871



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 89/303 (29%), Gaps = 33/303 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAFN 56
           G   A +L + G +V  I         D              +S+  +L  H + D    
Sbjct: 30  GSQSARSLREEGIEVILINSNPATIMTDPSMADHVYLKPLTTKSIIEILKAHPQIDSVLP 89

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGV--PVCPS 110
            + G    +  ++A      +   +      + A  ++ D+ + KQ+++  GV      +
Sbjct: 90  TMGGQTALNLCLEADEKGIWKDFNVNMIGVDVNAINITEDREQFKQLLAKLGVGAAPAKT 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P VI+P       G   +   +     L      +   ++LI++
Sbjct: 150 ANSFLKGKEIAQEFGFPLVIRPSFTLGGTGAAFVHTKEEFDEKLTYGLEMSPIHEVLIDK 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             K     
Sbjct: 210 ALIGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDTTFQKMRDMA 269

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 270 ILMMRSIGNFAGGCNVQFAVSPDDKEDIVAIEIN--PRVSRSS--ALASKATGYPIAKIA 325

Query: 290 LWM 292
             +
Sbjct: 326 TKL 328


>gi|154245170|ref|YP_001416128.1| Urea carboxylase [Xanthobacter autotrophicus Py2]
 gi|154159255|gb|ABS66471.1| Urea carboxylase [Xanthobacter autotrophicus Py2]
          Length = 1180

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 29/180 (16%), Positives = 61/180 (33%), Gaps = 18/180 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I+ P ++K   GG  +G+ +    Q +     +              Y++        + 
Sbjct: 150 ITYPVMLKSTAGGGGIGMQLCHTPQELADTFERVQRTARASFGDARVYLERFVAEARHVE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                  +  V         L+  +       PA +   D+   +   A    Q++    
Sbjct: 210 VQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPLLSDDVRASLHAAAVQLGQSVAYES 269

Query: 243 ISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++DP  ++ ++LE+N       P +T         A  G    +L+ WM+  A+
Sbjct: 270 AGTVEFIYDPARQEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIRQAA 317


>gi|327352746|gb|EGE81603.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 724

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P        MD        I  P +IK +KGG   G+ +    ++    L+       
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 287

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 288 ATRKDIWDKARSAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 331


>gi|260912807|ref|ZP_05919293.1| phosphoribosylglycinamide formyltransferase 2 [Pasteurella dagmatis
           ATCC 43325]
 gi|260633185|gb|EEX51350.1| phosphoribosylglycinamide formyltransferase 2 [Pasteurella dagmatis
           ATCC 43325]
          Length = 393

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 44/304 (14%), Positives = 81/304 (26%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGEALKALVEKEKPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQAGFNVIPTAKATQLTMNREGIRRLAAEELGLPT-SNYQFVDNFEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  ++K    I             D         G  + 
Sbjct: 143 GAVEKIGIPCVVKPIMSSSGHGQSILKSADDIQKAW---------DYAQQGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V      S+                  P  +      + Q +A  
Sbjct: 194 VEGFVKFDYEITLLTVRHIHGTSFLAPIGHIQIDGDYRESWQPQAMSKIALLKAQEIAEK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        +V + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITGALGGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|259416455|ref|ZP_05740375.1| pyruvate carboxylase [Silicibacter sp. TrichCH4B]
 gi|259347894|gb|EEW59671.1| pyruvate carboxylase [Silicibacter sp. TrichCH4B]
          Length = 1146

 Score = 55.6 bits (132), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 47/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P ++K   GG   G+  I  +  +   +L+            E Y++
Sbjct: 144 MDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
            +      +    L      +         ++  +       PA    D   +E+  L  
Sbjct: 204 KMITRARHVEVQILGDKHGEIYHLFERDCSVQRRNQKVVERAPAPYLTDAQREEICDLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              Q +        +FL D  +   +++E+N +
Sbjct: 264 KICQHVNYECAGTVEFLMDMETGNFYFIEVNPR 296


>gi|14521839|ref|NP_127315.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus abyssi
           GE5]
 gi|74581625|sp|Q9UY67|PURT_PYRAB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|5459059|emb|CAB50545.1| purT phosphoribosylglycinamide formyltransferase 2 (EC 2.1.2.-)
           (GART 2) (GAR transformylase 2)
           (5'-phosphoribosylglycinamide transformylase 2)
           (formate-dependent GAR transformylase) [Pyrococcus
           abyssi GE5]
          Length = 429

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVIAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFEFEKEGYFVVPNARATWIAMHRERLRETLVKEAKVPT-SRYMYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIEL 177
           ++   I  P   K +   S  G   +K  + IP    ++ +   G  + +I +     ++
Sbjct: 147 EACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDV 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +     D     V          +          PA+I     +EV R+A      
Sbjct: 207 EITELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDV 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 267 LGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPPGFS 309


>gi|300311536|ref|YP_003775628.1| phosphoribosylglycinamide formyltransferase 2 protein
           [Herbaspirillum seropedicae SmR1]
 gi|300074321|gb|ADJ63720.1| phosphoribosylglycinamide formyltransferase 2 protein
           [Herbaspirillum seropedicae SmR1]
          Length = 403

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 79/274 (28%), Gaps = 26/274 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                ++ +    +  ++   KPDL    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVINMTDGAALAALIEQEKPDLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +      L  +  T      +       R                       
Sbjct: 87  EAIATETLVKLEEAGLARVIPTARAAWLTMNREGIRRLAGETLGLATSPYRFADSLEELK 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P VIKP+   S  G   I     I      +++        +I +     + 
Sbjct: 147 AAIDQIGYPCVIKPVMSSSGKGQSKIDGPDEIESAWNYAAAGGRVDAGRVIVEGFIDFDY 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   SL+     V         ++          P  +P    ++ + +A    + 
Sbjct: 207 EITLLTVRSLNENGDTVTSFCDPIGHVQVKGDYVESWQPHPMPGAALEKARDIARKVTEN 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +G  G+   +         V++ E++ +P   GM
Sbjct: 267 LGGLGLFGVELFV--KGDMVWFSEVSPRPHDTGM 298


>gi|269961322|ref|ZP_06175687.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
 gi|269833873|gb|EEZ87967.1| conserved hypothetical protein [Vibrio harveyi 1DA3]
          Length = 1196

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/180 (13%), Positives = 52/180 (28%), Gaps = 16/180 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+        +          +  +      +V+       
Sbjct: 147 AEKIGYPVMLKSTAGGGGIGMQCCFSSDELTEAFDSVKRLSANNFSNDGVFVEKFIQQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V          +  +       PA    +    E+Q  A      + 
Sbjct: 207 HIEVQIFGDGRGHVVALGERDCSAQRRNQKVIEETPAPNLSESTRTELQNTAIRLASKVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+ D  ++  ++LE+N +     G+T            G    +L+ WM+  
Sbjct: 267 YRNAGTVEFVLDQQTQAFYFLEVNTRLQVEHGVTE--------EVFGV---DLVEWMIRQ 315


>gi|239612092|gb|EEQ89079.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis ER-3]
          Length = 712

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P        MD        I  P +IK +KGG   G+ +    ++    L+       
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 287

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 288 ATRKDIWDKARSAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 331


>gi|126439288|ref|YP_001058237.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 668]
 gi|171855115|sp|A3N7B6|PURT_BURP6 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|126218781|gb|ABN82287.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 668]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERARDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|322435502|ref|YP_004217714.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX9]
 gi|321163229|gb|ADW68934.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX9]
          Length = 451

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 81/248 (32%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I   RS    L              D      +G   E+     +     I +   
Sbjct: 47  EAICIGPARSAESYLNVPAVISAAEIADVDAIHPG-YGLLSENANFAEVCRASNIKFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
               + +  +K  ++Q +    VP+ P     I      ++    +  P ++K + GG  
Sbjct: 106 PPEVTRMMGEKSTARQTMKKAKVPILPGSDGVIANEDEALEWARSVGYPVILKAVAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ + +    +P    Q+S+         + Y++        +    L      V    
Sbjct: 166 RGMRICRNAAELPSMYQQASTEAANAFGNGDMYMEKFIERPRHIEFQVLADEHGNVMSLG 225

Query: 199 FYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+ +I   +  E+ ++   + + IG       +FL D    K+
Sbjct: 226 ERECSIQRRHQKLIEEAPSLQITPKLRAELGKVIERSLKDIGYWNAGTIEFLMDE-DGKI 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFIEMNTR 292


>gi|261202142|ref|XP_002628285.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
 gi|239590382|gb|EEQ72963.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Ajellomyces
           dermatitidis SLH14081]
          Length = 713

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/288 (18%), Positives = 97/288 (33%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 53  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGDTSAYLDGDRIIEI 107

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 108 AKKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 167

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P        MD        I  P +IK +KGG   G+ +    ++    L+       
Sbjct: 168 CVPGYHGENQNMDFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 227

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 228 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 287

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 288 ATRKDIWDKARSAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 331


>gi|54298654|ref|YP_125023.1| pyruvate carboxylase subunit A [Legionella pneumophila str. Paris]
 gi|53752439|emb|CAH13871.1| hypothetical protein lpp2718 [Legionella pneumophila str. Paris]
          Length = 471

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   GI +      I     +  S           Y++     
Sbjct: 145 HCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIAN 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +    L      V         ++        + P+    +   + +   A  A + 
Sbjct: 205 PRHIEVQILADHHGTVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLGYAVKAAKE 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +G       +F+ D  + + +++E+N +              +       G    +L+  
Sbjct: 265 VGYTNAGTVEFILD-KNNQPYFMEMNTR----------LQVEHPITEQITGI---DLVQE 310

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 311 QIRIAAGER 319


>gi|325527059|gb|EGD04486.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           TJI49]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAESFDAFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ D  I      +      +  ++++E ++D   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRTDADIKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +      + + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTWFCEPVGHVQVAGDYVESWQPQPMSAAALAKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|302340013|ref|YP_003805219.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta
           smaragdinae DSM 11293]
 gi|301637198|gb|ADK82625.1| carbamoyl-phosphate synthase, large subunit [Spirochaeta
           smaragdinae DSM 11293]
          Length = 1076

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/320 (15%), Positives = 103/320 (32%), Gaps = 41/320 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+ V  ++ +                      S+  ++   +PD   +
Sbjct: 29  SGNQAVRALKEEGYHVVLVNPNPATVMTTPGSADAIYLEPLSLESLTAIIERERPDALLS 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +     +LE   +    + + +  L+ D+ R K+VV+S G+    S+L
Sbjct: 89  TMGGQTALNLAGELARAGVLERFGVEIIGASMESIDLAEDRGRFKEVVTSLGLESPVSVL 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  V    + +   L +S   +     L+E+
Sbjct: 149 CRQVHEGLAFAEQAGFPLIVRPSFTLGGKGGGVANSLEELERLLAESLRESPVGTALVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G       +     D   +     +     +      +         ++  +     
Sbjct: 209 SLIGWREFELEVMRDKADNAVVVCSIENVDPMGVHTGDSVTVAPAQTLTEIEYQRMRTAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AA- 279
             +        G S   F       ++  +E+N  P ++  S        FP     A  
Sbjct: 269 IDILRAVGVDCGGSNVQFAMPKDGERMVVIEMN--PRVSRSSALASKATGFPIARCSAKL 326

Query: 280 YAGYSFRELLLWMV-EDASC 298
             GY+  E+L  +  + ASC
Sbjct: 327 AVGYTLDEVLNEITGKTASC 346



 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 17/168 (10%), Positives = 56/168 (33%), Gaps = 8/168 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +++P        + +    + +   L           +L++++++       
Sbjct: 703 AADLGYPVLLRPSFVLGGRSMYIAYGPEELEAFLETKPPMGASRPILVDRFLEDAFEYDL 762

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                S   +               +S  ++      K   ++++++++ A +  + +  
Sbjct: 763 --DAVSDGQSIYIGGIMQHIEAAGVHSGDSAAVFPAWKQLPEMHRQMRQAALIIARELPI 820

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            G     F       +++ LE+N +   T     P ++  +G    +L
Sbjct: 821 VGFLNIQFAV--RDGELYLLEVNPRASRT----VPFLSKASGVDLLDL 862


>gi|291548468|emb|CBL21576.1| carbamoyl-phosphate synthase, large subunit [Ruminococcus sp.
           SR1/5]
          Length = 1071

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 89/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFNV 57
           G     +L++ G +V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGMEVVLLNSNPATIMTDKDIADRVYIEPLTVEVVEQLILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  ++           + +  T +  +  A    + +         V     +
Sbjct: 90  LGGQAGLNLAMELEEKGFLKEHNVRLIGTTAATIRKAEDRQEFKDTMEKIGEPVAASKVV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P V++P       G  +   +  +   L      +   ++L+E+ 
Sbjct: 150 TTVEDGVAFTQTIGYPVVLRPAYTLGGSGGGIAHNEPELREILENGLRLSRVGEVLVERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   S           +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDSAGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLGDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 +G  G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITELGITGGCNVQYALHPESFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 89/291 (30%), Gaps = 32/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A    G++   I         D D              V  V+   KPD A     G   
Sbjct: 584 AFAKEGYETIIINNNPETVSTDFDIADKLYFEPLTPEDVENVVNIEKPDGAVVQFGGQTA 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                  I   ++I  T +  + +A   +   +         P   ++        + + 
Sbjct: 644 IKLTEALIKMGVKILGTSAENVDAAEDRELFDAILEKCEIPRPKGHTVFTAEEAKKAANE 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   D+ +   +   +       +L+++Y+ G E+    + 
Sbjct: 704 LGYPVLVRPSYVLGGQGMRIAVSDEDVEEYIGIINQIAQEHPILVDKYLMGKEIEVDAVC 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V P   I       +        QA+   G
Sbjct: 764 DGEDILI----PGIMEHIERAGIHSGDSISVYPAQTISQKAKDTIAEYTRRLAQALHVIG 819

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    F+       V+ +E+N +   T     P ++   G     L   ++
Sbjct: 820 MINIQFIVVGED--VYVIEVNPRSSRT----VPYISKVTGIPIVPLATRVI 864


>gi|289548708|ref|YP_003473696.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
 gi|289182325|gb|ADC89569.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermocrinis albus DSM 14484]
          Length = 475

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/280 (17%), Positives = 92/280 (32%), Gaps = 40/280 (14%)

Query: 22  CASALEDAGFKVSQID---------VDRSVGLVLAHLKP-----DLAFN----------V 57
              A E+ G K   I          V ++    L    P     D               
Sbjct: 17  IIRACEELGIKTVAIYSEVDTRSLHVKKADEAYLIPGDPIRAYLDYVRIVDLAKSVGADA 76

Query: 58  LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H   G   E+       +   I +         L  DK+++KQ++   G+P  P     
Sbjct: 77  IHPGYGFLAENADFARYCQKRGIVFIGPKPEHIELFGDKVKAKQMMQKLGIPTIPGSPEP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQ 165
           +      +     I  P ++K   GG   G+ V++  + +P     +       +  GD 
Sbjct: 137 LRNYEDALHYAREIGFPVILKSAFGGGGRGMRVVRTPEELPHLFESAYREAETFFGKGDL 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L +   D   +   ++GD   +V  +            K   +    VLP      I  
Sbjct: 197 FLEKYLDDPKHIEVQILGDKYGNVVHLGERDCSIQRKHQKIIEITPCPVLPPS----IRN 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  L+  A   +G       +FL D  + + +++E+N +
Sbjct: 253 KMLGLSVRAMMQVGYESAGTLEFLVDLKTGEFYFIEMNTR 292


>gi|624693|gb|AAA60989.1| D-alanine-D-alanine ligase-related enzyme [Enterococcus
           casseliflavus]
          Length = 200

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/157 (21%), Positives = 58/157 (36%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+GI   +  + +   L ++  ++   
Sbjct: 44  LKNAWKENPKKIFDQCEGSLLYPMFVKPANMGSSVGISKAENREELQNALQEAYRYDTRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V    FY Y  KY        +PA+IP +  
Sbjct: 104 IVEQGIEAREIEVAVLGNEDVRTTMPGEIVKDVAFYDYNSKYIDNRIEMQIPAQIPEETQ 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            + Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 164 AKAQEFAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|298717387|ref|YP_003730029.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
 gi|298361576|gb|ADI78357.1| UreA amidolyase-related protein [Pantoea vagans C9-1]
          Length = 1201

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/188 (16%), Positives = 64/188 (34%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
              +  P ++K   GG  +G+ V      +             +      +++       
Sbjct: 147 AERVGYPVMLKSTAGGGGIGMRVCGDANELSDAFETVQRLGQNNFSDAGVFLEKYIERAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   + GD   +V  + V          K         LPA +   +       A    
Sbjct: 207 HLEVQIFGDGKGEVIALGVRDCSVQRRNQKVIEETPAPNLPAGMAEALCS----AAIALG 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 263 KAVNYRSAGTVEFVYDSAALQFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVKW 311

Query: 292 MVEDASCL 299
           M+E A+  
Sbjct: 312 MIELAAGD 319


>gi|157692554|ref|YP_001487016.1| acetyl-CoA carboxylase alpha subunit [Bacillus pumilus SAFR-032]
 gi|157681312|gb|ABV62456.1| acetyl-CoA carboxylase alpha subunit [Bacillus pumilus SAFR-032]
          Length = 449

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/241 (14%), Positives = 85/241 (35%), Gaps = 6/241 (2%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G KVS+  ++  V + +A      A +  +G   E+           I +          
Sbjct: 53  GAKVSESYLNMEVIIEIAKQTNTDAIHPGYGLLSENAAFAERCRSEGIAFIGPSAQVIQC 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             +K+ +++ +   G+P+ P +          +     +  P ++K   GG  +G+ +++
Sbjct: 113 MGNKIEARKTMDQAGIPIVPGVSAPLYDAEEGVSKAQSLGYPIMLKASSGGGGIGMQLVR 172

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            D+ +      +             Y++ +      +    L  +             L+
Sbjct: 173 NDEELRKAFEGNQKRAQSFFNDGTLYMEKVIEDARHIEIQVLFDSFGHGVHLFERDCSLQ 232

Query: 206 YSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     PA      + +E+ ++A  A +AIG       + L D  ++  ++LE+N 
Sbjct: 233 RRHQKIIEEAPAACLDKSVRQEMGQMAVKAAKAIGYENAGTIECLVD-QNQHFYFLEMNT 291

Query: 265 Q 265
           +
Sbjct: 292 R 292


>gi|292493532|ref|YP_003528971.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus
           halophilus Nc4]
 gi|291582127|gb|ADE16584.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus
           halophilus Nc4]
          Length = 446

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 86/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAH-----LKPDLAF---------------- 55
                 A  + G +   I  +VDR +  VL       + P  +F                
Sbjct: 14  ALRILRACRELGIRTVAIHSEVDRELKHVLLADETVCIGPAASFQSYLNIPAVISVAEIT 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + + S GVP  P 
Sbjct: 74  DAIAIHPGYGFLAENADFAERVEQSGFVFIGPRAETIRLMGDKVSAIKAMKSSGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +   +     I  P +IK   GG   G+ V+  +  +   +  + +      
Sbjct: 134 SEGPLGEDDEENLAIAREIGYPVMIKAAGGGGGRGMRVVHSEAHLLTAISLTRTEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L                ++          PA  I  +  
Sbjct: 194 SNDMVYMEKYLENPRHVEFQVLADANGQAIHLGERDCSMQRRHQKVIEEAPAPGITDEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +  +   A + IG RG    +FL+     + +++E+N +
Sbjct: 254 QRMGEVCAEACRKIGYRGAGTFEFLY--QDGEFYFIEMNTR 292


>gi|194764885|ref|XP_001964558.1| GF23246 [Drosophila ananassae]
 gi|190614830|gb|EDV30354.1| GF23246 [Drosophila ananassae]
          Length = 698

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 62/184 (33%), Gaps = 14/184 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 173 AKAIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESQKSFGDSSVLLERYVRSPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 233 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 293 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 342

Query: 297 SCLR 300
           +  R
Sbjct: 343 AGER 346


>gi|224832061|gb|ACN66809.1| carbamoyl-phosphate synthase [Neohermes californicus]
          Length = 513

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   K   I+ +                       V  V+   +PD    
Sbjct: 147 SGSQAIKALREENIKTVLINPNIATVQTSKGLADKIYFLPLVPEYVEQVIKSERPDGVLL 206

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E        + I +   + D+    + ++     V    +
Sbjct: 207 TFGGQTALNCGVELQSSGIFEKYGCKIMGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 266

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +   +L   +  H  QL+I++
Sbjct: 267 VYSVKEALEAAEKLGYPVMARAAFSLGGLGSGFANNIEEL--KILAQQALAHSSQLIIDK 324

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 325 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNQEYNMLRTT 383

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 384 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 439

Query: 291 WM 292
            +
Sbjct: 440 KL 441


>gi|51921845|gb|AAU14064.1| VanB [Enterococcus faecalis]
          Length = 244

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/192 (22%), Positives = 76/192 (39%), Gaps = 36/192 (18%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHL----------------------------------K 50
            +    F    I + ++    L                                     +
Sbjct: 1   NINTEKFDPHYIGITKNGVWKLCKKPCTEWEADSLPAIFSPDRKTHGLLVMKEREYETRR 60

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+AF VLHG  GEDG +Q + EL  IPY    I +SA  MDK  +  +  + G+ V   
Sbjct: 61  IDVAFPVLHGKCGEDGAIQGLFELSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEF 120

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            ++ +        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ
Sbjct: 121 QMIEKGDKPEARTLTYPVFVKPARSGSSFGVTKVNSTEELNAAI--EAAGQYDGKILIEQ 178

Query: 171 YVDGIELTCGVM 182
            + G E+ C VM
Sbjct: 179 AISGCEVGCAVM 190


>gi|154309129|ref|XP_001553899.1| hypothetical protein BC1G_07459 [Botryotinia fuckeliana B05.10]
 gi|150852502|gb|EDN27694.1| hypothetical protein BC1G_07459 [Botryotinia fuckeliana B05.10]
          Length = 2246

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H KPD  + 
Sbjct: 467 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTADFVRKVIKHEKPDAIYV 526

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E  E+     G   S +   + R     S   +        S  
Sbjct: 527 TFGGQTALSVGIQLKDEFEELGVRVLGTPISTVITTEDRELFARSMESIGEKCAKSASAN 586

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      ++ +    L + ++    Q+LIE+ +
Sbjct: 587 NIDEAMHVVKDIGFPVIVRAAYALGGLGSGFADNEEELLE--LCNKAFAASPQVLIERSM 644

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 645 KGW-KEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 703

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 704 NVIRHLGVVGECNIQYALNPDSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 753


>gi|121610715|ref|YP_998522.1| urea amidolyase-like protein [Verminephrobacter eiseniae EF01-2]
 gi|121555355|gb|ABM59504.1| urea amidolyase related protein [Verminephrobacter eiseniae EF01-2]
          Length = 1228

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 56/182 (30%), Gaps = 16/182 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+ +++    +       +            +++      
Sbjct: 151 QARRIGYPVMLKSSAGGGGIGMRLVRDAGELAAAFEAVAHLARAHFNDAGLFLEKFVEPA 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +        +  V          +  +       PA          +   A    +A+
Sbjct: 211 RHIEVQLFGDGQGRVVALGERDCSAQRRNQKVIEETPAPHLAAGTRAALIDAALRLGRAV 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             R     +F+ D  S++ ++LE+N +     G+T            G    +L+  MV+
Sbjct: 271 NYRSAGTVEFVLDAASQQFYFLEVNTRLQVEHGVTE--------QVTGI---DLVRAMVQ 319

Query: 295 DA 296
            A
Sbjct: 320 LA 321


>gi|317131025|ref|YP_004090339.1| carbamoyl-phosphate synthase, large subunit [Ethanoligenens
           harbinense YUAN-3]
 gi|315469004|gb|ADU25608.1| carbamoyl-phosphate synthase, large subunit [Ethanoligenens
           harbinense YUAN-3]
          Length = 1067

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 92/286 (32%), Gaps = 32/286 (11%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++A  +P        G   
Sbjct: 578 ALRENGYEAVIVNNNPETVSTDFDTGDRLYFDPLTPEDVDNIIATEQPWGVVVQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T +  +  A   ++  +         P   + L     +++   
Sbjct: 638 IKLANHLAARGVRILGTSADGVDEAEDRERFDAVLEKCGIPRPAGHTALTAEEALEAARA 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        +I+   D  +   +   ++    + +LI++Y+ G E+    + 
Sbjct: 698 LGYPVLLRPSYVLGGQNMIIAYADTDVTEYMGIITAHGIDNPVLIDKYLMGKEVEVDAIC 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +S  V PA+     +   V        +A+   G
Sbjct: 758 DGEDILV----PGIMEHIERAGVHSGDSISVYPAQTLSAAVRATVLDYTEKLAKALKVIG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+    +  V+ +E+N +   T     P ++   G    +L
Sbjct: 814 MVNIQFVV--YNETVYVIEVNPRSSRT----VPYISKVTGVPMIDL 853



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 92/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V  ++ +                       V  ++   KPD     
Sbjct: 30  GTQACRALREEGIEVVLVNSNPATIMTDKLMADKIYIEPLTPEVVERIIEIEKPDSILPT 89

Query: 58  LHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G +  +Q      LE   +    +       + D+   K  + + G P   S +V
Sbjct: 90  LGGQTGLNLAMQIAEEGFLEKAGVKLLGTRPETIRKAEDRQAFKDTMEAIGEPCIASEVV 149

Query: 114 NRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G  + +  + +          +   Q+L+E+ 
Sbjct: 150 ESIEGAVAFSEKIGYPVIIRPAYTLGGSGGGIAETKEELVDIATNGLRLSRIHQILVEKC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +   +L          +       ++  +        +    Y+ ++  +
Sbjct: 210 IAGWKEIEYEVIRDALGNVITVCNMENIDP-VGIHTGDSIVVAPSQTLSDKDYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G         P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIISALGVEGGCNVQLALHPDSYEYAVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|49475570|ref|YP_033611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           henselae str. Houston-1]
 gi|49238377|emb|CAF27604.1| Biotin carboxylase [Bartonella henselae str. Houston-1]
          Length = 452

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 101/326 (30%), Gaps = 64/326 (19%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   +    D D                       S+  ++A  +  
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPPVRDSYLSIQQIIAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE  +I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHKITFIGPTAAHIRIMGDKIEAKKTAKKLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                I      +   H I  P +IK   GG   G+ V++ +Q   + L  + S     +
Sbjct: 133 GSDGAITEEAEALRIAHEIGYPVIIKASAGGGGRGMKVVRSEQEFAIALETTRSEAAAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V+GD + +   +            K     ++  L     
Sbjct: 193 GDDAVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSLQRRHQKIWEEATSPALNEIER 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             I   V          +G RG    +FL+   + K +++E+N +              +
Sbjct: 253 KKIGDIVANACAQ----LGYRGAGTIEFLY--ENGKFYFIEMNTR----------LQVEH 296

Query: 281 ------AGYSFRELLLWMVEDASCLR 300
                  G    +L+   +  AS  R
Sbjct: 297 PVTEAITGI---DLVHEQIHIASGCR 319


>gi|255952849|ref|XP_002567177.1| Pc21g01060 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588888|emb|CAP95003.1| Pc21g01060 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 708

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 93/288 (32%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E++L  G+  A    + G +V+ +  D       A   P  AFN                
Sbjct: 48  EIALRVGRTAA----ERGIRVTTLYTDPDSRAQHALSSP-FAFNLGSVSAYLDGDRIIEI 102

Query: 57  -------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 103 AKKEGCQAIHPGYGFLSENSAFAQKCTEAGLVFIGPPYKAIEDMGDKSRSKEIMTAAGVP 162

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P                  I+ P +IK +KGG   G+ +          L        
Sbjct: 163 CVPGYHGKNQDPTFLEEQADRITYPVLIKAVKGGGGKGMRIASSKAVFQAQLESAKSEAM 222

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           SS+   + L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 223 SSFGDDNVLVEKYITTPRHIEVQVFADKHGNSVALGERDCSIQRRHQKVLEESPAPHLPD 282

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               D++ + +  A      +G  G    +F+FD  S   +++E+N +
Sbjct: 283 ATRKDLWAKARAAAEA----VGYEGAGTVEFIFDNDSGDFYFMEMNTR 326


>gi|149194863|ref|ZP_01871957.1| Phosphoribosylglycinamide formyltransferase 2 [Caminibacter
           mediatlanticus TB-2]
 gi|149135022|gb|EDM23504.1| Phosphoribosylglycinamide formyltransferase 2 [Caminibacter
           mediatlanticus TB-2]
          Length = 389

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 72/269 (26%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A      G +V  +D                       ++  V+   KPD     +
Sbjct: 23  GKEVAIEANRLGCEVIAVDRYANAPAMLIAQKSYVVDMKNKDALLDVILREKPDFVLPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  IP   +    +    +         +        +       
Sbjct: 83  EAINIEALFEAENKGIHIIPNAEAVN-KTMNRKNIRVFAAEKLNLPTSKYEFVSTYEDLE 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIEL 177
            +   +  P V+KP+   S  G  ++K  + I      + S   G     I +     + 
Sbjct: 142 AACEKLGYPCVVKPVMSSSGHGQSIVKSKEEIITAWEFAKSDARGSADELIVEEFIDFDY 201

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   + +      P     S      S     +    +           A    + 
Sbjct: 202 EITLLTAKNDEEVVFCPPIGHIQSGGDYIFSWQEMEMSEIALKKAQEI-----AKKIVEG 256

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G RGI   +        +V++ E++ +P
Sbjct: 257 LGGRGIFGVELFI--KGDEVYFSEVSPRP 283


>gi|288574588|ref|ZP_06392945.1| carbamoyl-phosphate synthase, large subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
 gi|288570329|gb|EFC91886.1| carbamoyl-phosphate synthase, large subunit [Dethiosulfovibrio
           peptidovorans DSM 11002]
          Length = 1044

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/330 (12%), Positives = 94/330 (28%), Gaps = 56/330 (16%)

Query: 5   MGGISSEREV---------------SLSSGKAC---------ASALEDAGFKVSQI---- 36
            G  S+E +V               S+  G+             AL   G +   +    
Sbjct: 534 YGSYSAEGDVFSAPSGRAVAVLGSGSIRIGQGVEFDYCCVKAVEALRRRGIRAIMVNDNP 593

Query: 37  -------DVD----------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
                  D+             V  +L        F    G       +       E+  
Sbjct: 594 ETVSTDHDISDGLYVEPLTAEDVEALLDREGISSVFASFGGQTSLKVGLDLEARGKELIG 653

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                +  A       S     +   P   ++   +  +     I  P +++P       
Sbjct: 654 ISGDTVIQAEDRGAFVSLLDRLAIPYPKGTAVRDIKEGLSCGDGIGYPLMVRPSFVIGGA 713

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
            + V+ + Q +   L ++ S +   ++L+++++ G E    V+ D          P    
Sbjct: 714 AMRVVYRPQDLEGVLERAFSVDADQEVLMDRFLTGKEFEVDVICDGKDVFV----PGIFE 769

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVF 258
           +       S +S  V P     +  +        +  + +  +G+     +      +++
Sbjct: 770 HLDPAGIHSGDSMAVFPDISLNEEMRLEIANICESLGKTMNIKGLLNVQMVL--HGGRLW 827

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +E N +   T     P +A   G    ++
Sbjct: 828 VIEANPRASRT----VPIVAKLTGLPLVDI 853



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 90/303 (29%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+    ++ +                      SV  +LA  K      
Sbjct: 26  SGSQACRALKEEGYGTILLNSNPATIQTDTSLADMVYLRPLTVESVEEILAAHKIYGVVA 85

Query: 57  VLHGNFGEDGLV-QAILELLEIPY-----THSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +  V    + L +        T    +  A   +  R         V     
Sbjct: 86  TLGGQTGLNLCVSCQDMGLWDRYGVRVLGTSVASILKAEGRESFRDCVSSIGEPVVESAY 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +        P VI+P       G  V + + S+   + +    +   ++L+E+
Sbjct: 146 VGSMKEALAFAEKTPFPMVIRPDFTLGGTGGGVARDESSLKRIVAEGLKASPVSRVLVER 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           Y+ G       +                     +   + +S  V P     D I++ ++ 
Sbjct: 206 YLKG--WREIEVEVVRDGSGNSLAVCGMENVDPMGVHTGDSVVVSPVLSLSDRIWQTLRY 263

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A     A+  RG     F   P   +   +E+N +   +  S     +   GY    + 
Sbjct: 264 SALRIVDALDVRGACNVQFGLAPDGDEYVVIEVNPRA--SRSS--ALASKATGYPIARIA 319

Query: 290 LWM 292
             +
Sbjct: 320 AKI 322


>gi|146090477|ref|XP_001470586.1| hypothetical protein [Leishmania infantum JPCM5]
 gi|134070619|emb|CAM68967.1| conserved hypothetical protein [Leishmania infantum JPCM5]
          Length = 516

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/251 (18%), Positives = 83/251 (33%), Gaps = 20/251 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT +      +S   M+ 
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTGAISKYYEMSKPDMKL 120

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLL 155
                +        +            +  P +IK + G SS+G+    K      L   
Sbjct: 121 VAYYYNIATANYVVLEPGADIERLCGDLQFPCIIKHISGYSSVGMDKSCKVHDMAQLVDR 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELK 205
            +         L+E++V G E T     D++        P              +  +  
Sbjct: 181 ATRFMAEYQFALVEEFVSGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLKWA 240

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINV 264
                    +P + P  +   +        + +G  G  R D   D   + +V +LEIN 
Sbjct: 241 SYEGMQWTQVPQEDP-ALQNMIDIARSAFKRMMGGIGYGRIDVRIDRQNNNRVVFLEINP 299

Query: 265 QPGMTPVSIFP 275
             G+    ++P
Sbjct: 300 NCGI----MYP 306


>gi|309776348|ref|ZP_07671336.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
 gi|308915944|gb|EFP61696.1| carbamoyl-phosphate synthase, large subunit [Erysipelotrichaceae
           bacterium 3_1_53]
          Length = 1071

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 48/312 (15%), Positives = 88/312 (28%), Gaps = 41/312 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G    +AL + G++V  I+ +                          V+   +PD     
Sbjct: 30  GCQACTALREEGYEVILINSNPATIMTDTVIADRVYIEPLTLEFASRVIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+           +EI  T    +  A   DK R         VP    +
Sbjct: 90  LGGQTGLNLVVELAESGILDEYQVEILGTALDAIEKAEDRDKFRELMYEIGEPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P V++P       G      ++ +          +   Q LIEQ 
Sbjct: 150 HTIEEAVAFAESNGYPVVVRPAFTLGGTGGGFAHSEEELRTICDNGLKISPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +       ++  A
Sbjct: 210 IAG-YKEIEYEVMRDNADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLTDRECGIMRASA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL--- 288
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 289 ------LLWMVE 294
                 L  ++ 
Sbjct: 325 VAVGLTLDEIIN 336



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 89/292 (30%), Gaps = 36/292 (12%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C   + + G++   I+ +                       V  V+   +P        G
Sbjct: 577 CVKTIRERGYEAIVINNNPETVSTDYSISDKLYFEPLTIEDVMHVIDLEQPLGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   Q +   ++I  T    +  A    +        +   P   + +     +  
Sbjct: 637 QTAINLADQLVERGVKILGTSLENIDRAEDRHEFEEMLHKLNIPQPQGETAVEVEEAVSI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++  D  + + +       +H   +L+++Y+ G E+  
Sbjct: 697 ANRIGYPVLVRPSYVLGGRAMEIVHNDDDLRVYMATAVKEISHDAPILVDKYIIGKEMEV 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V PA      +   +   A    +  
Sbjct: 757 DAICDGEHVYI----PGIMEHIERAGVHSGDSISVYPAPTASQKVKDTITDYAIRIGKGF 812

Query: 239 GCRGISRSDFLF--DPLSRK--VFWLEIN-----VQPGMTPVSIFPEMAAYA 281
              G+    F+   D  S +  V+ LE+N       P ++ V+  P      
Sbjct: 813 HFIGLYNIQFIVETDKQSGEERVYVLEVNPRSSRTVPFLSKVTNVPMSYVAT 864


>gi|259503427|ref|ZP_05746329.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
 gi|259168505|gb|EEW53000.1| conserved hypothetical protein [Lactobacillus antri DSM 16041]
          Length = 834

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 96/286 (33%), Gaps = 20/286 (6%)

Query: 14  VSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI-- 71
           VSL S       ++ +  +   +    ++  V+   KP      L      +   + +  
Sbjct: 53  VSLES----HDVIDHSCIEALTV---ENLLAVINRYKPHAILPTLGNRRAFELTQRLMDK 105

Query: 72  --LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPP 127
             L    I    +         + +   + + S   P+    ++   +  +   + +  P
Sbjct: 106 GVLREKGIRLLGTPEATIHQINNPVLLSRTLHSMDAPMKSIATVNNYQDALREANQLGYP 165

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            +I+ +   S+    ++   + +   +      +  +Q+L++Q + G      V+     
Sbjct: 166 VIIRSVLPKSNSTRRIVHDRRELAAAVQNCLKQSRAEQVLVQQSLAG-YKEIEVVVQRDQ 224

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             T + +   +       ++  +     P  +     ++++  AF   + +   G++   
Sbjct: 225 SGTMMMLAMVEDMDPIGIHAGDSVAFNPPQTLLDRQIQDMRDTAFAITRKLRIVGVNHVQ 284

Query: 248 FLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWM 292
           F  +P + + + ++ N  P      S     A   GY   ++   +
Sbjct: 285 FALNPANDRFYVIK-N-SPYFDRMTSFV---AQSTGYPVAKVCAQL 325


>gi|222148332|ref|YP_002549289.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           vitis S4]
 gi|221735320|gb|ACM36283.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 450

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 7/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177
              I  P +IK   GG   G+ V   +  +   +  + S      G+  +  +   G   
Sbjct: 149 AREIGFPVLIKATAGGGGRGMKVANTEAELEEAVSTARSEAAAAFGNDAVYMEKYLGTPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +      +    A+   +      +             +  +   ++ ++   A + 
Sbjct: 209 HIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALTQEQRMKIGQICADAMKK 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  RG    +FL+   + + +++E+N +
Sbjct: 267 LKYRGAGTIEFLY--ENGEFYFIEMNTR 292


>gi|254462434|ref|ZP_05075850.1| carbamoyl-phosphate synthase, large subunit [Rhodobacterales
           bacterium HTCC2083]
 gi|206679023|gb|EDZ43510.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium HTCC2083]
          Length = 1101

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 95/315 (30%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 138

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V   T ++                  I  P +I+P       G  V    +         
Sbjct: 139 VTAPTDENGKADLNEGVRLALEDLEQIGLPAIIRPAFTMGGTGGGVAYNREDYEFFCRSG 198

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L++Q + G +     +   + D   I     +     +      +      
Sbjct: 199 MDASPVNQILVDQSLLGWKEFEMEVVRDTADNAIIVCAIENIDPMGVHTGDSITVAPALT 258

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 259 LTDKEYQVMRNHSIAVLREIGVETGGSNVQWAVNPADGRIVVIEMN--PRVSRSS--ALA 314

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 315 SKATGFPIAKIAAKL 329



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 567 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMINCNPETVSTDYDTSD 619

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 620 RLYFEPLTFEHVMEILRVEMEDGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 679

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+   +    + + +           I  P VI+P        + +++ 
Sbjct: 680 LAEDRERFQALVNQLNLKQPKNGIASTDAEALSIAEEIGFPLVIRPSYVLGGRAMEIVRD 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 740 MAQLERYIAEAVVVSGDSPVLLDSYLSGAVELDVDALCDGKEVHVTGIMQHIEEAG---V 796

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+ K ++        A+   G+    F       +++ +E+N +
Sbjct: 797 HSGDSACSLPPYSLADDVIKRIEEQTHALALALNVVGLMNVQFAI--KDDEIYLIEVNPR 854

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 855 ASRT----VPFVAKAT 866


>gi|150391900|ref|YP_001321949.1| carbamoyl phosphate synthase large subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149951762|gb|ABR50290.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 1070

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 89/283 (31%), Gaps = 31/283 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG +   +           D+             V  ++   KP+       G   
Sbjct: 583 ALRKAGIETIMVNNNPETVSTDFDISDKLYFEPLTEEDVLNIVEKEKPNGVILQFGGQTA 642

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   +K  +     +   P   ++      +     
Sbjct: 643 IKLAKFFREMNIPILGTQPEQIDVAEDREKFEALMEELNIDRPKGKAVWSLEEGLVVAET 702

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +  +++ +   L  S   +    +LI++Y+ G E+    + 
Sbjct: 703 LGYPVLVRPSYVLGGQGMEITYEEKELIRYLGDSFERDKKTPVLIDRYLIGTEIEVDALC 762

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +           + +      +  +I +++         A+  +G+
Sbjct: 763 DGEEILIPGIMEHLERAGIHSG---DSISMYPSQNVSEEIKEKIIDYTKRIALALRVQGM 819

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA 281
               F+      +++ +E+N       P ++ V+  P +A   
Sbjct: 820 INIQFI--EYENELYIIEVNPRSSRTVPYISKVAEVPIIALAT 860



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/317 (14%), Positives = 97/317 (30%), Gaps = 40/317 (12%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGLVL--------------AHLKPDLAFNV 57
           G     AL++ G +V  ++        DR +   +                 +PD     
Sbjct: 30  GTQACQALKEEGVEVVLVNSNPATIMTDREMADKIYIEPLKVEIIEKIIEKERPDSLIAG 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--I 111
           + G  G +  V+      L    +    + I +     D+   K ++     P   S  I
Sbjct: 90  MGGQTGLNLAVELHDQGILNKYGVRVIGTSIESIKKGEDRELFKNLMEKIQQPSIESEII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    +++   L      +   Q+L+E+ 
Sbjct: 150 TKLEDGLSFAEEIGYPVIVRPAYTLGGAGGGIADDPEALKTILTAGLHLSPVGQVLLERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  +
Sbjct: 210 IKGWKEIEYEVMRDGSGNCITVCNMENIDP-VGVHTGDSIVVAPSQTLSDKEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                AIG  G     F  DP S     +EIN  P ++  S     +   GY   ++   
Sbjct: 269 IDIINAIGIEGGCNVQFALDPHSFAYVVIEIN--PRVSRSS--ALASKVTGYPIAKVAAK 324

Query: 292 M--------VEDASCLR 300
           +        +++A   +
Sbjct: 325 IALGFGLDEIKNAVTKK 341


>gi|323137693|ref|ZP_08072769.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocystis sp. ATCC
           49242]
 gi|322396990|gb|EFX99515.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocystis sp. ATCC
           49242]
          Length = 452

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 67/219 (30%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         L  DK+ +K      G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILEEHNITFIGPKSEHIRLMGDKIEAKATAKKLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +   +  +     I  P ++K   GG   G+ V +    + + +  + +        
Sbjct: 135 DGPVRSEKEALKVAEKIGFPVLVKAASGGGGRGMKVARDPHDLSIAIATARTEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +        +            L+          P+    D  +  
Sbjct: 195 DTVYIEKYLEKPRHIEFQVFGDGKGEAIHLGERDCSLQRRHQKVFEESPSPALNDTQRRE 254

Query: 228 QRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  A + +   G    +FLF   + + +++E+N +
Sbjct: 255 MGEVCARAMRELQYAGAGTIEFLF--ENGEFYFIEMNTR 291


>gi|312891092|ref|ZP_07750615.1| carbamoyl-phosphate synthase, large subunit [Mucilaginibacter
           paludis DSM 18603]
 gi|311296400|gb|EFQ73546.1| carbamoyl-phosphate synthase, large subunit [Mucilaginibacter
           paludis DSM 18603]
          Length = 938

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/301 (15%), Positives = 94/301 (31%), Gaps = 31/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G   A +L+D G  VS I+ +                      S+  +L   K D     
Sbjct: 30  GSQAALSLKDEGISVSIINSNPATIMTDKVIADHVYLLPLEPESIEKILQEQKIDAVLPT 89

Query: 58  LHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
           + G    +  +    + I E   +      + A   + ++   +Q++   GV V  S   
Sbjct: 90  MGGQTALNLCISVAERGIWEKYGVKIIGVDLAAIEKTENREAFRQLMVDIGVGVATSKIA 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  ++   I  P VI+P       G   + K +     L +    +   ++L+EQ 
Sbjct: 150 NSFLEGKEAAQQIGFPLVIRPSYTLGGKGAGFVHKKEEFDAALSRGLQASPTHEVLVEQA 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D   I     +F    +      +                 +  
Sbjct: 210 VLGWKEFELELLRDGNDNVIIICSIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQAI 269

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +        G     F  +P++ ++  +EIN  P ++  S     +   GY   ++   
Sbjct: 270 KMMRAIGNFAGGCNVQFSVNPVNDEIIAIEIN--PRVSRSS--ALASKATGYPIAKIAAK 325

Query: 292 M 292
           +
Sbjct: 326 L 326



 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 89/268 (33%), Gaps = 15/268 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+     L G       +   L    I    +    
Sbjct: 611 DKLYFEPVFW---EHVREIIELEKPEGVIVQLGGQ--TALKMAEKLHEHGIKIIGTSYDN 665

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ R   ++    +P             ++  H +  P +++P       G+ ++
Sbjct: 666 MDIAEDRGRFSDMLKDLDIPYPKYGVAENAEEAIEVAHHVGYPVLVRPSYVLGGQGMSIV 725

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             D+ +   ++       G+++LI+ ++D           +  +   I            
Sbjct: 726 INDEDLETAVVNLLKNLPGNRVLIDHFLD-RAEEAESDSISDGEDVHIIGMMEHIEP-AG 783

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  ++  + P  +  ++ ++++       +A+  RG+    F     +  V+ +E N 
Sbjct: 784 IHSGDSNAVLPPFNLSENVTRQMEEHTVKIAKALNVRGLLNIQFAI--KNEMVYVIEANP 841

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   T     P +A      +  +   +
Sbjct: 842 RASRT----VPFIAKAYDVPYINIAAKI 865


>gi|254501511|ref|ZP_05113662.1| carbamoyl-phosphate synthase, large subunit [Labrenzia alexandrii
           DFL-11]
 gi|222437582|gb|EEE44261.1| carbamoyl-phosphate synthase, large subunit [Labrenzia alexandrii
           DFL-11]
          Length = 1120

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 86/320 (26%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIVLVNSNPATIMTDPDLADATYIEPITPELVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--------- 103
            + G        D     +LE   +    +       + D+ + +  +            
Sbjct: 89  TMGGQTALNCALDLEQMGVLEKYGVEMIGARADVIDKAEDREKFRAAMDVIGLENPRAAI 148

Query: 104 -----------GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                       +            M +   I  P +I+P       G  V    +    
Sbjct: 149 ASSPAIRGEDGKITGYDRNTGYLEAMRALDEIGLPAIIRPAFTLGGTGGGVAYNREEYET 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q+LI++ + G +     +     D   I     +     +      + 
Sbjct: 209 IVRSGIDASPVGQVLIDESLLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  DP + ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRDASIAVLREIGVETGGSNVQFAVDPENGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344



 Score = 37.9 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 49/344 (14%), Positives = 97/344 (28%), Gaps = 66/344 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A ALEDAG++   +         D D S 
Sbjct: 586 VVILGGGPN-------RIGQGIEFDYCCCHAAFALEDAGYETIMVNCNPETVSTDYDTSD 638

Query: 43  GLVLAHLKPDLAFNV---------LHGNFGE-------DGLVQAILELLEIPYTHSGILA 86
            L    L P+    +         LHG   +             +   + I  T   ++ 
Sbjct: 639 RLYFEPLTPEDVLEIIRKEQENGILHGVIVQFGGQTPLKLAQTLVKANVPILGTSPDMID 698

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 +  P V++P        + +I+ 
Sbjct: 699 LAEDRDRFQKLLIKLGLKQPENGIAYSVEQGRLIASQLGLPLVVRPSYVLGGRAMQIIRD 758

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           D+S+   L          +  +    D+      V G                ++     
Sbjct: 759 DESLNSYLLGTLPELVPAEVRAKYPNDKTGQINTVLGTNPLLFDRYLEGAIEVDVDALCD 818

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               +                     + P  +  D+ +E++R       A+   G+    
Sbjct: 819 GKDVFVCGIMEHIEEAGIHSGDSACSLPPFSLSEDLIEELKRQTTEMALALEVGGLMNVQ 878

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +       +++ LE+N +   T     P +A   G S  ++   
Sbjct: 879 YAI--KDGEIYVLEVNPRASRT----VPFVAKTVGESIAKIASR 916


>gi|6634642|emb|CAB64515.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|6634654|emb|CAB64523.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 46

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           N  PG T  S++P +      S+ +L+  +V+ A
Sbjct: 1   NTMPGFTQWSMYPLLWDNMRISYPDLIERLVDLA 34


>gi|113476541|ref|YP_722602.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
 gi|110167589|gb|ABG52129.1| D-alanine--D-alanine ligase [Trichodesmium erythraeum IMS101]
          Length = 361

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 19/191 (9%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           + PP+V+KP    +SLG+ ++  +  I   L +       ++LL+E Y+ G EL   V  
Sbjct: 159 MKPPFVVKPTSEDNSLGLTLVWDESQIEAALDKGF--ELDNKLLVEDYIPGRELRVAVVE 216

Query: 182 ---------------MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
                            +  +             +   +     +  + PA +  +++++
Sbjct: 217 RESKLSVLPMIEYLVTEEHPIRTVHDKYVLQSDGTPGKQPEKPIAQPICPANVTPELFEK 276

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH A+GCR  S  DF     + + ++LE  +  G   +S+   M    G S  
Sbjct: 277 LVNAAKNAHIALGCRDYSLYDFRVHAETNEPYFLEAGLFWGFGKISMISRMLQADGQSLE 336

Query: 287 ELLLWMVEDAS 297
           ++ L +   A+
Sbjct: 337 DVSLELWSAAA 347


>gi|299783110|gb|ADJ41108.1| Carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           CECT 5716]
          Length = 1029

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  A+++AG++   I         D   S  L    L  +   NV++             
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                +   L    +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +           +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGIHSG---DSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIVA---DRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                      S+  ++    PD     
Sbjct: 30  GSQACISLKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      L    +    + +     + D+ + K         VP   ++
Sbjct: 90  LGGQTGLNLAIELDQAGVLNKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P +++P       G  +    + + L   +  + +   + LIEQ 
Sbjct: 150 HTVEAACQFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +  EI+V   + +     ++  +        +P   Y+ ++  A
Sbjct: 210 IAG-LKEIEFEVMRDANGDEISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G         P+S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LAIVAALKIEGGCNVQLAQSPISDDYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|302382110|ref|YP_003817933.1| carbamoyl-phosphate synthase large subunit [Brevundimonas
           subvibrioides ATCC 15264]
 gi|302192738|gb|ADL00310.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 1100

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  +         D D              V  ++A  +PD    
Sbjct: 29  SGVQACKALKAEGYRVILVNSNPATIMTDPDMADATYIEPITPEFVERIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +          L    +    +       + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALDASGALAKYGVEMIGAKADVIDKAEDRQKFRDAMDKLGLESPKSKA 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D    +  P +I+P    +  G  +    +     +L+    +   ++LIE+
Sbjct: 149 AHTLDEALDGLEFVGLPAIIRPSFTLAGTGGGIAYNREEFEEIVLRGLDLSPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRTGS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 44.1 bits (102), Expect = 0.027,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 65/165 (39%), Gaps = 9/165 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V++P       G++++   + +   + ++   +  D +LI+ Y++       
Sbjct: 719 AEEVGYPVVLRPSYVLGGRGMMIVHDREQLDRYVGEAMRVSGSDPVLIDHYLN-RATEVD 777

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V      +   +A    +       +S  ++  + P  +  +I  E++R      +A+  
Sbjct: 778 VDALCDDETVFVAG-VLEHIEEAGVHSGDSACSMPPFSLSAEIVTELKRQTEAMARALKV 836

Query: 241 RGISRSDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           RG+    F  +     + ++F LE+N +   T     P +A   G
Sbjct: 837 RGLMNVQFAIEEPHSDNPRIFVLEVNPRASRTA----PFVAKTIG 877


>gi|260662296|ref|ZP_05863192.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
 gi|260553679|gb|EEX26571.1| carbamoyl-phosphate synthase, large subunit [Lactobacillus
           fermentum 28-3-CHN]
          Length = 1029

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  A+++AG++   I         D   S  L    L  +   NV++             
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                +   L    +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +           +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGIHSG---DSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIVA---DRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                      S+  ++    PD     
Sbjct: 30  GSQACISLKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      L    +    + +     + D+ + K         VP   ++
Sbjct: 90  LGGQTGLNLAIELDQAGVLNKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P +++P       G  +    + + L   +  + +   + LIEQ 
Sbjct: 150 HTVEAACQFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +  EI+V   + +     ++  +        +P   Y+ ++  A
Sbjct: 210 IAG-LKEIEFEVMRDANGDEISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G         P+S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LAIVAALKIEGGCNVQLAQSPISDDYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|227514706|ref|ZP_03944755.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
 gi|227086910|gb|EEI22222.1| glutamine-hydrolyzing carbamoyl-phosphate synthase [Lactobacillus
           fermentum ATCC 14931]
          Length = 1029

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  A+++AG++   I         D   S  L    L  +   NV++             
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                +   L    +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +           +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGIHSG---DSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIVA---DRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                      S+  ++    PD     
Sbjct: 30  GSQACISLKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      L+   +    + +     + D+ + K         VP   ++
Sbjct: 90  LGGQTGLNLAIELDQAGVLKKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P +++P       G  +    + + L   +  + +   + LIEQ 
Sbjct: 150 HTVEAACQFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +  EI+V   + +     ++  +        +P   Y+ ++  A
Sbjct: 210 IAG-LKEIEFEVMRDANGDEISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G         P+S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LAIVAALKIEGGCNVQLAQSPISDDYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|184155204|ref|YP_001843544.1| carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
 gi|183226548|dbj|BAG27064.1| carbamoyl-phosphate synthase large subunit [Lactobacillus fermentum
           IFO 3956]
          Length = 1029

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 99/293 (33%), Gaps = 31/293 (10%)

Query: 22  CASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------GNF 62
           C  A+++AG++   I         D   S  L    L  +   NV++             
Sbjct: 578 CVQAIQEAGYRAIIINNNPETVSTDFSISDKLYFEPLTIEHVMNVVNLEQPRGVIVQFGG 637

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDS 120
                +   L    +    + +     + D+ + ++++   G+                 
Sbjct: 638 QTAINLTKELVKRGVKILGTSLQGIEQTEDRHQFEELLKDAGIAQPKGATALNLAEAKVI 697

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P +++P        + V++ +  +   + ++        +LI+ YV G+E    
Sbjct: 698 APVVGYPVMVRPSFVLGGRAMAVVENETELVTYVNKALKAAPNQPVLIDHYVAGLECEVD 757

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D    +    +   +           +     P ++     KE+ + A    Q + C
Sbjct: 758 ILSDGHDVLIPGIMEHLEGSGIHSG---DSMALYPPVRLTSAQQKEIVQTAIAIGQRVHC 814

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            G+    F+      +V+ +E+N +   T     P M+   GY   +L   ++
Sbjct: 815 LGMMNIQFIVA---DRVYVIEVNPRASRT----VPFMSKVTGYHLAKLATRLI 860



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 96/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     +L++ G++V  ++ +                      S+  ++    PD     
Sbjct: 30  GSQACISLKEEGYQVVLVNSNPATIMTDDQIADQVYLEPLTVPSLTEIIELEHPDALLPT 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPSI 111
           L G  G +  ++      L+   +    + +     + D+ + K         VP   ++
Sbjct: 90  LGGQTGLNLAIELDQAGVLKKFGVTLLGTDLQTIQEAEDREQFKQLMEEIGQPVPASLTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                          P +++P       G  +    + + L   +  + +   + LIEQ 
Sbjct: 150 HTVEAACQFAEEAGYPVIVRPAFTLGGTGGGIANDQEELELIAKRGLAQSPVTECLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +  EI+V   + +     ++  +        +P   Y+ ++  A
Sbjct: 210 IAG-LKEIEFEVMRDANGDEISVCCMENFDPVGIHTGDSIVVAPNQTLPDVQYQRLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+   G         P+S   + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LAIVAALKIEGGCNVQLAQSPISDDYYVIEVN--PRVSRSS--ALASKATGYPIAKIAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325


>gi|167718729|ref|ZP_02401965.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei DM98]
          Length = 390

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVLRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|53725500|ref|YP_103516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 23344]
 gi|67643788|ref|ZP_00442531.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           GB8 horse 4]
 gi|121599959|ref|YP_992375.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           SAVP1]
 gi|124386476|ref|YP_001026822.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10229]
 gi|126448913|ref|YP_001079893.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10247]
 gi|167004412|ref|ZP_02270170.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           PRL-20]
 gi|254175712|ref|ZP_04882372.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 10399]
 gi|254202200|ref|ZP_04908563.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           FMH]
 gi|254207527|ref|ZP_04913877.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           JHU]
 gi|254298447|ref|ZP_04965899.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 406e]
 gi|254359943|ref|ZP_04976213.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           2002721280]
 gi|81823967|sp|Q62IF4|PURT_BURMA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171769275|sp|A1V2C2|PURT_BURMS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171769822|sp|A2S4F3|PURT_BURM9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172044050|sp|A3MI07|PURT_BURM7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52428923|gb|AAU49516.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 23344]
 gi|121228769|gb|ABM51287.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           SAVP1]
 gi|124294496|gb|ABN03765.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10229]
 gi|126241783|gb|ABO04876.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           NCTC 10247]
 gi|147746447|gb|EDK53524.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           FMH]
 gi|147751421|gb|EDK58488.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           JHU]
 gi|148029183|gb|EDK87088.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           2002721280]
 gi|157808222|gb|EDO85392.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 406e]
 gi|160696756|gb|EDP86726.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           ATCC 10399]
 gi|238525224|gb|EEP88652.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           GB8 horse 4]
 gi|243060268|gb|EES42454.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia mallei
           PRL-20]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVLRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|195952477|ref|YP_002120767.1| phosphoribosylglycinamide formyltransferase 2 [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932089|gb|ACG56789.1| phosphoribosylglycinamide formyltransferase 2 [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 394

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 32/267 (11%), Positives = 81/267 (30%), Gaps = 21/267 (7%)

Query: 19  GKACASALEDAGFKVSQIDV-DRSVGLVLA-HLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +  A       + V  ID+ ++ +   +A    PD     +     +  +         
Sbjct: 47  AQQVAQ-----RYYV--IDMKNKELLKSIAYREAPDFIVPEIEAINTDALIELEQEGFNI 99

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +P   +          +  + + +          +        +   +  P V+KP+   
Sbjct: 100 VPCAKAVKYTMNRIAIRRFAAEELGLPT-SKYKFVNTFEELKQAAKELGYPVVVKPVMSS 158

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           S  G  ++ K+Q +      +     GD  +L++E+++D       +             
Sbjct: 159 SGKGQSIVYKEQDLEKAFYIAREKARGDSKELIVEEFIDFDYEITMLTVRTKNQGILFCP 218

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
           P         +          P  +   + ++ Q +A    + +G  GI   +       
Sbjct: 219 PIGHI-----QVEGDYYESWQPHPMDDKLLQKAQNIARTVVEGLGGYGIFGCELFV--RK 271

Query: 255 RKVFWLEINVQPGMTPVSIFPEMAAYA 281
            +V + EI+ +P      +   ++   
Sbjct: 272 DEVIFNEISPRP--HDTGMVTMISQNM 296


>gi|160878679|ref|YP_001557647.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           phytofermentans ISDg]
 gi|160427345|gb|ABX40908.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           phytofermentans ISDg]
          Length = 448

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/313 (13%), Positives = 88/313 (28%), Gaps = 49/313 (15%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   I        + A L  +                             
Sbjct: 17  IIRACREMGIQTVAIYSTADEQALHAQLADEAVCIGPAYAKDSYLKMERILSATLASGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +            DK  ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFAQLCEKCNIAFIGPNKDVIDRMGDKACARNTMMEAKVPVVPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +       + I  P +IK   GG   G+ ++  ++        +            
Sbjct: 137 PLHELKRAKALANEIGYPIMIKASAGGGGRGMRIVHSEEEFDNLFETARQEAKNAFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L      V         ++          P+    + + KE+ 
Sbjct: 197 MYLERYISGARHIEFQILADQFGNVVHLGERDCSVQRRHQKMIEEAPSAALNESLRKEMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284
            +A +A +A         +FL D    + +++E+N +     G+T +          G  
Sbjct: 257 EVAVMAAKAANYTNAGTIEFLLDDK-GRYYFIEMNTRIQVEHGITEL--------VTGI- 306

Query: 285 FRELLLWMVEDAS 297
             +L+   ++ A+
Sbjct: 307 --DLIKEQIKIAA 317


>gi|52079620|ref|YP_078411.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|52784983|ref|YP_090812.1| carbamoyl phosphate synthase large subunit [Bacillus licheniformis
           ATCC 14580]
 gi|319646586|ref|ZP_08000815.1| CarB protein [Bacillus sp. BT1B_CT2]
 gi|52002831|gb|AAU22773.1| carbamoyl-phosphate transferase-arginine (subunit B) [Bacillus
           licheniformis ATCC 14580]
 gi|52347485|gb|AAU40119.1| CarB [Bacillus licheniformis ATCC 14580]
 gi|317391174|gb|EFV71972.1| CarB protein [Bacillus sp. BT1B_CT2]
          Length = 1029

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ +                      S+  ++   KPD    
Sbjct: 29  SGTQGCMALKSEGYRVILVNSNPATIMTDESFADEIYFEPLTVESLTQIIKREKPDGLLA 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +  V+           +++  T    +      +K R+     +  VP    
Sbjct: 89  NLGGQTALNLAVELEKAGILKAYGVKLLGTSVDTIEKGEDREKFRALMKELNEPVPDSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +++P       G  +    +     +  +   +   Q L+E+
Sbjct: 149 VDNQDDALRFALSIGFPIIVRPAYTLGGKGGGIAATKEEFLPLIESALLASPIHQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             + T I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEIEYEVMRDSNNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDADYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DP S+  + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIISALDVVGGCNIQFALDPESKNYYVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 87/259 (33%), Gaps = 13/259 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D A     G    +         + +  T S  L      D+      
Sbjct: 620 EHILNVAEAEDIDFAIVQFGGQSAINVAQAIEKAGITLLGTSSETLDILEDRDQFYQLLD 679

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                     +       +   + I  P +I+P      +G++++  +  +   L  +S 
Sbjct: 680 ELGISHAKGETASSKAEAVKKANEIGYPVLIRPSYVIGGMGMMIVHSEAELRELLGGASQ 739

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AK 218
             +   +LI+QYV G E    ++ D          P    +  +    S +S  +LP   
Sbjct: 740 MPY--PILIDQYVSGKEFEIDLVSDGGDLYI----PTYIEHIEKAGVHSGDSYAILPGPS 793

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +  ++    +  A    + +G +GI    F+ D  S ++  LE+N +   T     P ++
Sbjct: 794 VTPEMKSAARDAAAKIVRKLGFKGIMNIQFIAD--SDELLILEVNPRASRT----VPVVS 847

Query: 279 AYAGYSFRELLLWMVEDAS 297
              G     L   ++  +S
Sbjct: 848 KVMGVPMIPLAAKLLAGSS 866


>gi|260427525|ref|ZP_05781504.1| pyruvate carboxylase [Citreicella sp. SE45]
 gi|260422017|gb|EEX15268.1| pyruvate carboxylase [Citreicella sp. SE45]
          Length = 1147

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I   + +   +L+            E Y++ + +   
Sbjct: 151 AEEIGYPLMLKASWGGGGRGMRPINNAKELKEKVLEGRREAEAAFGNGEGYLEKMIIRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L   +  +         ++  +       PA    +   +E+  L       + 
Sbjct: 211 HVEVQILGDKQGNIYHLYERDCSVQRRNQKVVERAPAPYLSEAQREELCELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 271 YECAGTVEFLMDMETGKFYFIEVNPR 296


>gi|294054571|ref|YP_003548229.1| protein of unknown function DUF201 [Coraliomargarita akajimensis
           DSM 45221]
 gi|293613904|gb|ADE54059.1| protein of unknown function DUF201 [Coraliomargarita akajimensis
           DSM 45221]
          Length = 372

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/264 (13%), Positives = 83/264 (31%), Gaps = 22/264 (8%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  +L   + D+   +   +       +  LE L        + + +++ +K      
Sbjct: 60  DAIESLLQAEQIDVLLPIFDTDIEFVMKHRDRLERLTTLAVMPELRSYSIAENKSLMSSY 119

Query: 100 VSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             +  V    +  +      M +      P ++K  +G    GI  +     +   +  +
Sbjct: 120 AEAHRVNAPKTLRVEDADSFMRAARDFDFPALLKIAEGCGGSGIYRLLSYSELEAMVKAN 179

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                  + +++ YVDG ++   V+      +           S      ++        
Sbjct: 180 PDMLEPGRYILQSYVDGWDIDVNVLCREGRCLALSVQKALVPASGYAMAEAIEFV----- 234

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-QPGMTPVSIFPE 276
                   E +         +   G++  D  FD   +    +E+N    G    S+   
Sbjct: 235 -----EDPEAEAFVRDLFAELNWSGVAHIDLRFDVQEQNYKLIEVNPRIWGTIYGSVL-- 287

Query: 277 MAAYAGYSFRELLLWMVEDASCLR 300
               AG +F +LL+ +    SC R
Sbjct: 288 ---GAGINFPDLLIQL----SCGR 304


>gi|188995307|ref|YP_001929559.1| carbamoyl-phosphate synthase large subunit [Porphyromonas
           gingivalis ATCC 33277]
 gi|188594987|dbj|BAG33962.1| carbamoyl-phosphate synthase large subunit [Porphyromonas
           gingivalis ATCC 33277]
          Length = 1075

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ + G +   ++ +                       V  V+   +PD    
Sbjct: 29  SGSQALKAIREEGIRTVLVNPNIATVQTSEGIADEIYFLPVTPYFVEKVIEKERPDGILL 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +LE   +    + + A   + D+    + +    V    S  
Sbjct: 89  AFGGQTALNCGVELYRSGVLEKYGVEVLGTPVQAIMDTEDRELFVRKLDEINVKTIQSQA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +I+       LG      +  +   +L   +++   Q+L+E+
Sbjct: 149 VESVEEARKAARELGYPVIIRAAYALGGLGSGFCDDEDELN--ILCEKAFSFSPQVLVEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 207 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     +  DP S     +E+N +  ++  S     +   GY   
Sbjct: 266 AIRIIRHIGIVGECNVQYALDPDSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 317


>gi|163783209|ref|ZP_02178203.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159881543|gb|EDP75053.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 477

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 50/329 (15%), Positives = 104/329 (31%), Gaps = 63/329 (19%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP-----DLAFN-- 56
           EV+L        A ++ G K   I          V ++    L    P     D      
Sbjct: 12  EVALR----IIRACKELGIKTVAIYSEADVRSLYVKKADEAYLIPGDPIRAYLDYVRIVD 67

Query: 57  --------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                    +H   G   E+       +   I +            DK+++K+V+S  G+
Sbjct: 68  LARQVGADAIHPGYGFLAENADFARYCQRRGITFIGPTPDQIETFGDKVKAKKVMSEAGL 127

Query: 106 PVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--- 158
           PV P +          +     I  P ++K   GG   G+ V+  ++ +      +    
Sbjct: 128 PVVPGVPEPITDVEEALKFAREIGFPVILKAAYGGGGRGMRVVYSEEDLKTAFESAYREA 187

Query: 159 --SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
              +  GD  + +   +   +   V+GD   ++  +            K   +  +  LP
Sbjct: 188 ETFFGKGDIFVEKFIDNPKHIEVQVLGDKYGNIIHLGERDCSIQRRHQKLIEIAPSPALP 247

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
             + + I     R        +G       +FL D  + + +++E+N +           
Sbjct: 248 QDLRMKILGNAVRSLMK----VGYENAGTLEFLVDTRTGEYYFIEMNTR----------L 293

Query: 277 MAAY------AGYSFRELLLWMVEDASCL 299
              +       G    +++  M++ A+  
Sbjct: 294 QVEHTITETITGI---DIVEAMIKIAAGD 319


>gi|156394457|ref|XP_001636842.1| predicted protein [Nematostella vectensis]
 gi|156223949|gb|EDO44779.1| predicted protein [Nematostella vectensis]
          Length = 711

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 61/187 (32%), Gaps = 21/187 (11%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P ++K ++GG   G+ ++         L  + + +          V+    
Sbjct: 178 QQEAERIGYPVMLKAVRGGGGKGMRIVNSPDEFHEMLESAKNESIKSFNDDSMLVEKFVE 237

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
           T   +        +  V         ++          PA  +  ++ + +   A  A +
Sbjct: 238 TPRHVEVQVFGDRQGNVVYLYERDCSVQRRHQKIIEEAPAPGVSDEVRRSIGEAAVRAAK 297

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLL 290
           A+G  G    +F+ D      +++E+N +            A +       G    +L+ 
Sbjct: 298 AVGYFGAGTVEFIMDSSQN-FYFMEMNTR----------LQAKHPITEMITGL---DLVE 343

Query: 291 WMVEDAS 297
           W ++ A+
Sbjct: 344 WQLKIAA 350


>gi|325300638|ref|YP_004260555.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324320191|gb|ADY38082.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 1075

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +PD    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGVADKIYFLPVTPYFVEKVIDKERPDGVLL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G       + E   +    + + A   + D+    + +    V    S  
Sbjct: 87  SFGGQTALNCGVALYQGGVFEKYGVQVLGTPVQAIMDTEDRELFVKKLDEINVKTIKSEA 146

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 CENIEQARQAARDLGYPVIIRAAYALGGLGSGFCDNEEELN--VLAEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|226287033|gb|EEH42546.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb18]
          Length = 716

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/216 (18%), Positives = 77/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        M
Sbjct: 99  YGFLSENSTFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTTAGVPCVPGYHGENQDM 158

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           D        I  P +IK +KGG   G+ +    ++    L+       +S+ +   L+ +
Sbjct: 159 DFLEAEAERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGNDTMLVEK 218

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     DI+   + 
Sbjct: 219 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPEATRKDIWDRARA 278

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 279 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 310


>gi|167901894|ref|ZP_02489099.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei NCTC 13177]
 gi|217419527|ref|ZP_03451033.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 576]
 gi|217396831|gb|EEC36847.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 576]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDSASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|148358601|ref|YP_001249808.1| acetyl-CoA carboxylase biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
 gi|148280374|gb|ABQ54462.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
          Length = 471

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   GI +      I     +  S           Y++     
Sbjct: 145 HCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIAN 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +    L      V         ++        + P+    +   + +   A  A + 
Sbjct: 205 PRHIEVQILADHHGTVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLGYAVKAAKE 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +G       +F+ D  + + +++E+N +              +       G    +L+  
Sbjct: 265 VGYTNAGTVEFILD-KNNQPYFMEMNTR----------LQVEHPITEQITGI---DLVQE 310

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 311 QIRIAAGER 319


>gi|325192947|emb|CCA27331.1| methylcrotonoylCoA carboxylase subunit alpha putativ [Albugo
           laibachii Nc14]
          Length = 626

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/269 (14%), Positives = 84/269 (31%), Gaps = 25/269 (9%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +    K +      +G   E+           I +    + A      K  SK+++ 
Sbjct: 23  ILQICRQAKVEAVHPG-YGFLSENADFAMECRDNGIQFIGPPVEAIVSMGSKSASKEIMI 81

Query: 102 SCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + G+PV      +  +          +  P +IK + GG   G+ ++      P  L   
Sbjct: 82  AAGIPVLHGYHGDDQSDSRLQIEADSMGYPILIKAVLGGGGKGMRIVTNRNEFPEALEAC 141

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                         ++        +           +         ++          PA
Sbjct: 142 RREAQSFFKDSRVLLEKYLNNPRHIEYQIFADNYGQIVHLFERDCSIQRRHQKVIEEAPA 201

Query: 218 KIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPV 271
              ++ + +++   A  A +A+G  G    +FL D    K +++E+N       P +T  
Sbjct: 202 INVIESLRQKMGEAAIHAAKAVGYIGAGTVEFLLDQ--DKFYFMEMNTRLQVEHP-ITEY 258

Query: 272 SIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                       + ++L+ W +  AS  +
Sbjct: 259 -----------ITNQDLVEWQLRVASGEK 276


>gi|6942169|gb|AAF32338.1|AF218939_6 acetyl-CoA carboxylase [Bacillus subtilis]
          Length = 430

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 49/149 (32%), Gaps = 2/149 (1%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +   I  P ++K   GG  +G+ ++  ++++      +             Y++ +  
Sbjct: 131 CLAASEIGYPVMLKASAGGGGIGMQLVPDEEALIKAYEGNKKRAADFFGDGSMYIEKVIE 190

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQ 236
               +    L                ++          P   +  ++  ++   A  A +
Sbjct: 191 HARHIEIQILADHHGHAVHLFERDCSVQRRHQKVIEEAPSPFVDDELRMKIGETAVKAAK 250

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AIG       +FL D      ++LE+N +
Sbjct: 251 AIGYANAGTIEFLVDENKN-FYFLEMNTR 278


>gi|78067130|ref|YP_369899.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           383]
 gi|123567942|sp|Q39E61|PURT_BURS3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|77967875|gb|ABB09255.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia sp. 383]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 81/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFEAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K +  +      +      +  ++++E ++D   
Sbjct: 147 AAIAKIGMPCVVKPVMSSSGKGQSVVKTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T+            ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATDATRTYFCEPVGHVQVAGDYVESWQPQPMSAVALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +   +     V++ E++ +P
Sbjct: 267 ALGGRGMFGVELFVNGDD--VWFSEVSPRP 294


>gi|300726597|ref|ZP_07060038.1| carbamoyl-phosphate synthase, large subunit [Prevotella bryantii
           B14]
 gi|299776129|gb|EFI72698.1| carbamoyl-phosphate synthase, large subunit [Prevotella bryantii
           B14]
          Length = 1076

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G K   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIKSVLVNPNVATIQTSEGVADQVYFLPVNTHFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + ++   + V  S  
Sbjct: 87  AFGGQTALNCGTELYKTGVLKEYGVQVLGTSVEAIMNTEDRDLFVKALNKIDMKVPVSQA 146

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + S   I  P +I+       LG  V           +  S++    Q+L+E+
Sbjct: 147 CETLDEAIASARKIGYPIMIRSAYALGGLGSGVCPD--EATFKEIAESAFTFAPQVLVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q +
Sbjct: 205 SLKGW-KEIEFECIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKYLQDI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                + +   G     F F+  +     +EIN +  ++  S     +   GY    +  
Sbjct: 264 TIKCVRHLNIIGECNIQFAFNADTNDYRIIEINAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|237719407|ref|ZP_04549888.1| carbamyl phosphate synthetase [Bacteroides sp. 2_2_4]
 gi|229451267|gb|EEO57058.1| carbamyl phosphate synthetase [Bacteroides sp. 2_2_4]
          Length = 1075

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AICIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|224029553|gb|ACN33852.1| unknown [Zea mays]
          Length = 89

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 17/63 (26%), Positives = 27/63 (42%)

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               D  +  ++       A+G  G SR D   +  S +V  +E+N  PGMTP ++    
Sbjct: 4   FCSEDALQRCKKSIETMANALGLEGFSRIDAFVNVRSGEVLLIEVNTVPGMTPSTVLIHQ 63

Query: 278 AAY 280
           A  
Sbjct: 64  ALA 66


>gi|258597921|ref|XP_001348838.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium falciparum 3D7]
 gi|255528926|gb|AAN37277.2| biotin carboxylase subunit of acetyl CoA carboxylase, putative
           [Plasmodium falciparum 3D7]
          Length = 3367

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/256 (13%), Positives = 84/256 (32%), Gaps = 14/256 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L            +        + A +    +           + +DK   +    
Sbjct: 600 LSTLLEKENIIFIGPTGNVMEALGDKISANILAQSVEVPVVKWSGDNIRIDKF--ENNKI 657

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  +    +I      +     I  P +IK  +GG   GI  ++ +  I     Q  +  
Sbjct: 658 NDELYNNATIHSLDDCIKECKRIGFPVMIKASQGGGGKGIRKVENEYEIKKAYEQVQNEL 717

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
               + + +  + +     +      D+       S       +          P+ +P 
Sbjct: 718 PNSPIFLMKVCNNVRH---IEIQVVGDMYGNVCSLSGRDCTTQRRFQKIFEEGPPSVVPY 774

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSI 273
            I++E+++ +    + I  RG    ++L+D +++K F+LE+N       P   G+T  ++
Sbjct: 775 PIFREMEKSSIRLTKMIKYRGAGTIEYLYDQINKKYFFLELNPRLQVEHPVSEGITNCNL 834

Query: 274 FPEMAA-YAGYSFREL 288
                    G   + +
Sbjct: 835 ISIQLQVAMGIPLQNI 850


>gi|34540345|ref|NP_904824.1| carbamoyl-phosphate synthase large subunit [Porphyromonas
           gingivalis W83]
 gi|34396657|gb|AAQ65723.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           gingivalis W83]
          Length = 1075

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ + G +   ++ +                       V  V+   +PD    
Sbjct: 29  SGSQALKAIREEGIRTVLVNPNIATVQTSEGIADEIYFLPVTPYFVEKVIEKERPDGILL 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +LE   +    + + A   + D+    + +    V    S  
Sbjct: 89  AFGGQTALNCGVELYRSGVLEKYGVEVLGTPVQAIMDTEDRELFVRKLDEINVKTIQSQA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +  +   +L   +++   Q+L+E+
Sbjct: 149 VESVEEARKAARELGYPVIVRAAYALGGLGSGFCDDEDELN--ILCEKAFSFSPQVLVEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 207 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     +  DP S     +E+N +  ++  S     +   GY   
Sbjct: 266 AIRIIRHIGIVGECNVQYALDPDSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 317


>gi|54295504|ref|YP_127919.1| acetyl-CoA carboxylase [Legionella pneumophila str. Lens]
 gi|53755336|emb|CAH16832.1| hypothetical protein lpl2591 [Legionella pneumophila str. Lens]
          Length = 471

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   GI +      I     +  S           Y++     
Sbjct: 145 HCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIAN 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +    L      V         ++        + P+    +   + +   A  A + 
Sbjct: 205 PRHIEVQILADHHGTVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLEYAVKAAKE 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +G       +F+ D  + + +++E+N +              +       G    +L+  
Sbjct: 265 VGYTNAGTVEFILD-KNNRPYFMEMNTR----------LQVEHPITEQITGI---DLVQE 310

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 311 QIRIAAGQR 319


>gi|261879442|ref|ZP_06005869.1| carbamoyl-phosphate synthase [Prevotella bergensis DSM 17361]
 gi|270334011|gb|EFA44797.1| carbamoyl-phosphate synthase [Prevotella bergensis DSM 17361]
          Length = 1074

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGMETVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + ++   V    S  
Sbjct: 88  SFGGQTALNCGVELYESGVLDKYHVKVMGTPVRAIMDTEDRELFVEKLNEIDVKTIKSEA 147

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    + H +  P +++       LG      D+ +    +   +++   Q+L+E+
Sbjct: 148 CESFDEAQKAAHDLGYPVIVRAAYALGGLGSGFADNDEELSA--ICEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     F FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHVGIVGECNVQFAFDPSSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|225849299|ref|YP_002729463.1| pyruvate carboxylase (Pyruvic carboxylase) (PYC)
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643093|gb|ACN98143.1| pyruvate carboxylase (Pyruvic carboxylase) (PYC)
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 482

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 100/322 (31%), Gaps = 56/322 (17%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54
                 A ++   K   I                        +   L + +  DLA    
Sbjct: 23  ATRIIRACKELDIKTVAIYSEADAKSIYVKKADEAYLIPGDPIQAYLNYFRIVDLAKQTK 82

Query: 55  FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
            + +H   G   E+           I +        AL  DKM +K+ +   GVPV P  
Sbjct: 83  CDAIHSGYGFLSENPEFAEYCWKQGIVFIGPHPDHIALFGDKMAAKKKMRELGVPVLPGS 142

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNH 162
              I   +        I  P ++K   GG   G+ +++++         +       +  
Sbjct: 143 DEPISDIKKAKKIADEIGYPVILKAAFGGGGRGMRIVREESEFEDLFKSAFNEAKKFFGR 202

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           GD  + +   +   +   +M D   +V  +            +             +  D
Sbjct: 203 GDVFIEKYVENPRHIEIQIMADKYGNVVHLGERDCSIQ----RRHQKVVEIARSPTLNED 258

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM----TPVSIFPEMA 278
           + +E+ R +  A   +G   +   ++L D      +++E+N +  +    T   +     
Sbjct: 259 VKRELYRTSVKAMFKVGYENVGTIEYLVDEKDN-FYFIEMNTR--LQVEHTVTEMV---- 311

Query: 279 AYAGYSFRELLLWMVEDASCLR 300
              G    +++  M++ A   +
Sbjct: 312 --TGI---DIVQQMIKIAQGEK 328


>gi|194014909|ref|ZP_03053526.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Bacillus pumilus ATCC 7061]
 gi|194013935|gb|EDW23500.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Bacillus pumilus ATCC 7061]
          Length = 449

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 87/241 (36%), Gaps = 6/241 (2%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           G KVS+  ++  V + +A      A +  +G   E+           I +          
Sbjct: 53  GAKVSESYLNMEVIIEVAKQTNTDAIHPGYGLLSENAAFAERCRSEGIAFIGPSAQVIQR 112

Query: 90  SMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             +K+ +++ +   G+P+ P +          +     +  P ++K   GG  +G+ +++
Sbjct: 113 MGNKIEARKTMDHTGIPIVPGVSAPLHDAEEGISKAQSLGYPIMLKASSGGGGIGMQLVR 172

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            D+ +      +             Y++ +      +    L  +             L+
Sbjct: 173 NDEELRKAFEGNQKRAQSFFNDGTLYMEKVIEDARHIEIQVLFDSFGHGVHLFERDCSLQ 232

Query: 206 YSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     PA    + + +E+ R+A  A +AIG       + L D  +++ ++LE+N 
Sbjct: 233 RRHQKIIEEAPAACLDESVRQEMGRVAVKAAKAIGYENAGTIECLVD-QNQQFYFLEMNT 291

Query: 265 Q 265
           +
Sbjct: 292 R 292


>gi|254362709|ref|ZP_04978794.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           PHL213]
 gi|153094331|gb|EDN75190.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           PHL213]
          Length = 393

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                   +D + +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYDNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEQFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAIQEIGIPCVVKPIMSSSGHGQSVIKSEADIQQAW---------DYSQQGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V      S+                  P ++     K+ Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHIHGTSFLAPIGHIQVDGDYRESWQPQQMSDIALKKAQETAEK 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P  T         +S F   A    G  
Sbjct: 254 ITSALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGIVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|254294262|ref|YP_003060285.1| acetyl-CoA carboxylase, biotin carboxylase [Hirschia baltica ATCC
           49814]
 gi|254042793|gb|ACT59588.1| acetyl-CoA carboxylase, biotin carboxylase [Hirschia baltica ATCC
           49814]
          Length = 448

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/247 (15%), Positives = 83/247 (33%), Gaps = 14/247 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I+E  +I +         L  DK+ +K  +   GVP  P     +   
Sbjct: 83  YGFLSENAKFAEIVEAHDIAFIGPTAEHIRLMGDKIAAKDAMIRTGVPCVPGSDGGVADV 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   G+ V      +      + + +         Y++ 
Sbjct: 143 AEAQKVAKQIGYPVIIKASAGGGGRGMKVALTPDELETAFRTARTESKAAFGDDAVYIEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  T   V         L+          P+    +    E+ +    
Sbjct: 203 YLQKPRHIEIQVIADTHGNVVHLGERDCSLQRRHQKVFEEAPSPALTESERAEIGKRVCA 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           + + +G RG+   +FL+   + + +++E+N +  +       EM      + ++L+   +
Sbjct: 263 SIKKLGYRGVGTIEFLW--ENNEFYFIEMNTR--LQVEHPVTEM-----ITRKDLVQEQI 313

Query: 294 EDASCLR 300
             AS  +
Sbjct: 314 RIASGEK 320


>gi|219852895|ref|YP_002467327.1| carbamoyl phosphate synthase large subunit [Methanosphaerula
           palustris E1-9c]
 gi|254813601|sp|B8GEA3|CARB_METPE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|219547154|gb|ACL17604.1| carbamoyl-phosphate synthase, large subunit [Methanosphaerula
           palustris E1-9c]
          Length = 1056

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/300 (13%), Positives = 92/300 (30%), Gaps = 32/300 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L + G +V  ++ + +                     +  ++   KPD   +
Sbjct: 29  SGSQACKSLREEGIEVVLVNSNPATIQTDPETADTIYIEPLRASIIAKIIEKEKPDGILS 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +   +      L  +EI  T    +      +K ++        VP    + 
Sbjct: 89  GMGGQTGLNLTAELAELGALRNVEILGTPLEAIYQGEDREKFKALMQKIGEPVPRSMILN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 +    +  P +I+P       G  +      +   +      +   Q+LIE+ V
Sbjct: 149 RLDQLGEVIEKVGLPVIIRPAYTLGGAGGGIAHTVDELKRIVEIGLQRSRIHQVLIEESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +          +   +  D Y+ ++  + 
Sbjct: 209 MGWKELEFEVMRDAKDTCVIICSMENVDPMGVHTGESVVVAPI-LTLRDDEYQMMRSASI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G     F F         +E+N  P ++  S     +   GY    +   +
Sbjct: 268 KIIRALDVQGGCNIQFAF--QDGDYRVIEVN--PRVSRSS--ALASKATGYPIARVAAKI 321



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 91/294 (30%), Gaps = 39/294 (13%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------HGNF 62
            AL + G +V  +         D D S  L    ++ +   N+L             G  
Sbjct: 563 KALREEGVEVHIVNNNPETVSTDFDTSDQLFFEPMQLEDVVNILKTDDYFGVMVQFGGQN 622

Query: 63  GEDGLVQAILELLEIPYTH------SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +  +  + E+ ++             +  A   D+            P   S      
Sbjct: 623 AVNLALPLLQEIKKLGLPTAILGSSPDAMDIAEDRDRFSELLDALKIPSPPNSSAYSEEA 682

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGI 175
            +   + I  P +++P        + ++  +  +   + ++   +    +LI+ +  + I
Sbjct: 683 ALAMANKIGFPVLVRPSYVLGGRAMEIVHDNFELESYMKEAMRVSKSHPVLIDSFLQEAI 742

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLA 234
           EL    + D    +    +   +    E    S +S  V+P +   D +   V+      
Sbjct: 743 ELDVDAVCDGDEVLIGGIMEHIE----EAGVHSGDSACVIPTQSLSDSVLARVREYTKKI 798

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +G  G+             V+ LE N +   T     P ++   G    ++
Sbjct: 799 AMGLGVVGLVNIQLAV--KDDIVYVLEANPRASRT----VPFVSKATGIPLAKV 846


>gi|326692767|ref|ZP_08229772.1| carbamoyl-phosphate synthase large subunit [Leuconostoc argentinum
           KCTC 3773]
          Length = 1059

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G++V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYQVILVNSNPATIMTDAEIADKVYVEPISIDFIERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   +  +      +  +P    
Sbjct: 89  TLGGQTGLNMAKDLSEAGILDDLHIELLGTKLTAIEEAEDREAFKDLMERLNEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  +      +          +   Q+LIE+
Sbjct: 149 ATTLEQALAFADTHGYPVIVRPAYTLGGTGGGIATTHDELVEIAANGLELSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +       T  +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDASDNALVVASMENFDPVGIHTGDSIVTAPVQTLSDREVQMM-RDS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPKSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 92/289 (31%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQRAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPLGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +             P+  +       + +  
Sbjct: 639 AINLAQPLFENGVHILGTTVEDLNRAEDREAFDQVIKQLQLPQPIGKTATTVAEALAAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+
Sbjct: 699 EIGYPVLIRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  + +   P  +   +  E+ + A    +A+G  G
Sbjct: 759 SDGETAVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQDEMTQAAINLAKAMGTIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+    +   + +E+N +   T     P ++        +L   
Sbjct: 816 LMNVQFVIHEDT--AYVIEVNPRASRT----VPFISKVTHIPLAQLATR 858


>gi|310780363|ref|YP_003968695.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
 gi|309749686|gb|ADO84347.1| carbamoyl-phosphate synthase large subunit [Ilyobacter polytropus
           DSM 2926]
          Length = 1061

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 101/291 (34%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL-----HG-----NFGED 65
           A+++AG++   I         D D S  L    L  D   NV+     +G          
Sbjct: 578 AIKEAGYQSIIINNNPETVSTDFDTSDKLYFESLYIDDVLNVIREENPYGVIVQFGGQTS 637

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHL 123
             +   LE   +    +   +  L+ D+ + +  +   G+             +  +   
Sbjct: 638 INLAKRLEESGVNILGTKYESIDLAEDRDKFRNFLEGLGIESPEGYAAKNLEESYAAAEK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + V+   +S+   +  +   +    +LI++YV G E+    + 
Sbjct: 698 IGYPVVVRPSYVIGGRAMRVVHNKESLTEYMTHAIDMSKETTILIDKYVYGTEIEVDAIC 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  ++  E+          I   GI
Sbjct: 758 DGEDILIPGIMEHIEKTG---VHSGDSITSYPTISLSDEVIAELVESTRKIAVNIKTLGI 814

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-LLWMV 293
               ++FD    K++ +E+N +   T     P ++   G    ++ +  M+
Sbjct: 815 INIQYVFDGK--KLYIIEVNPRASRT----VPILSKVTGVPMVKVAVETML 859



 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 85/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRSVGL--------------VLAHLKPDLAFN 56
           SG     A+++ G ++  ++        D ++                ++   KP     
Sbjct: 27  SGTQACKAIKEEGIEIVLLNSNPATIMTDNNIADKVYIEPLTVEVAEEIIKKEKPQGILA 86

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G          +G        +++   +S  +  A   ++ +         V +   
Sbjct: 87  GFGGQTALNLAMELEGQGILDKYNVKLFGINSEAIRRAEDREEFKELLEKLGEPVAISGI 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  +    +       +    +   QLL+EQ
Sbjct: 147 ASTMDECVKFAETNGFPIIVRPAYTMGGTGGGIADNMEDFKDICSKGLIMSPIKQLLLEQ 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S           +F    +                 + Y+ +++ 
Sbjct: 207 SVAGWKEIEYEVMRDSKGNCITVCNMENFDPVGIHTGDSIVIAPSQTLTNYE-YQMLRQS 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +      +   G     F  DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SLKIIDELKIEGGCNVQFALDPHSHNYIVIEVN--PRVSRSS--ALASKATGYPIAKIAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|296108310|ref|YP_003620011.1| acetyl-CoA carboxylase [Legionella pneumophila 2300/99 Alcoy]
 gi|295650212|gb|ADG26059.1| acetyl-CoA carboxylase [Legionella pneumophila 2300/99 Alcoy]
          Length = 471

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   GI +      I     +  S           Y++     
Sbjct: 145 HCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIAN 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +    L      V         ++        + P+    +   + +   A  A + 
Sbjct: 205 PRHIEVQILADHHGTVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLGYAVKAAKE 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +G       +F+ D  + + +++E+N +              +       G    +L+  
Sbjct: 265 VGYTNAGTVEFILD-KNNQPYFMEMNTR----------LQVEHPITEQITGI---DLVQE 310

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 311 QIRIAAGER 319


>gi|261330789|emb|CBH13774.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           gambiense DAL972]
          Length = 739

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVD 173
                I  P +IK + GG   G+ ++ ++    L L        + +     +L    + 
Sbjct: 217 HEAKTIGFPVLIKAVSGGGGKGMKIVMEETEFHLMLESAKREAINFFKDDRVILERYVMH 276

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              + C +  D+  +                +             + +D+ + +  +A  
Sbjct: 277 PRHIECQIFFDSFDNGVFFFERDCSVQ----RRHQKVIEEAPAPGLSVDMRRRIGDVALT 332

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+G  G    +F+FD    + F++E+N +
Sbjct: 333 AARAVGYVGAGTVEFIFDTEKDEFFFMEMNTR 364


>gi|222085639|ref|YP_002544169.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221723087|gb|ACM26243.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 450

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/259 (13%), Positives = 81/259 (31%), Gaps = 31/259 (11%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         +  DK+ +K      G+PV P  
Sbjct: 78  DAVHPG-YGFLSENAKFADILDAHGITFIGPTADHIRIMGDKITAKTTAQQLGIPVVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK---KDQSIPLDLLQSSSWNHGD 164
              +      + +   I  P +IK   GG   G+ V +               ++   G+
Sbjct: 137 DGEVKTEEEALKTAKEIGYPVLIKATAGGGGRGMKVARTEADVLEAWSTARTEAAAAFGN 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + +  +   G      +      +    A+   +      +             + ++  
Sbjct: 197 ESVYMEKYLGKPRHIEIQVFGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
            ++ ++   A   +  RG    +FL+   + + +++E+N +              +    
Sbjct: 255 MKIGQICADAMMKLKYRGAGTIEFLY--ENGEFYFIEMNTR----------LQVEHPVTE 302

Query: 281 --AGYSFRELLLWMVEDAS 297
              G    +L+   +  AS
Sbjct: 303 AITGI---DLVHEQIRVAS 318


>gi|221199581|ref|ZP_03572625.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2M]
 gi|221205519|ref|ZP_03578534.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2]
 gi|221174357|gb|EEE06789.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2]
 gi|221180866|gb|EEE13269.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD2M]
          Length = 404

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 82/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L       +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAQIEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVSQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A   VT             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPVTLDTRTWFCEPIGHVQVAGDYVESWQPQPMRAAALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDEVWFSEVSPRP 294


>gi|146095686|ref|XP_001467639.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|134072004|emb|CAM70704.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania infantum JPCM5]
 gi|322501642|emb|CBZ36724.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 687

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 55/150 (36%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
            + +  P +IK + GG   G+ ++++ + +   L  +     + +     +L        
Sbjct: 159 ANKVGFPILIKAVSGGGGKGMKIVERPEDLAFMLESAKREAANFFKDDRVILERYVKRPR 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            + C +  D                    +             + +++ + +  +A  A 
Sbjct: 219 HIECQIFFDKHGRGVFFFERDCSVQ----RRYQKVLEEAPAPHLSMEMRQRIGEVALQAA 274

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +F+FD  +   +++E+N +
Sbjct: 275 KAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|225554499|gb|EEH02796.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus G186AR]
          Length = 1280

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 99/288 (34%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 613 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 667

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 668 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 727

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P    +  +M+        I  P +IK +KGG   G+ +    ++    L+       
Sbjct: 728 CVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 787

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 788 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 847

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 848 ATRKDIWDKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 891


>gi|156146858|gb|ABU53441.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146870|gb|ABU53447.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|119025272|ref|YP_909117.1| JadJ [Bifidobacterium adolescentis ATCC 15703]
 gi|118764856|dbj|BAF39035.1| JadJ [Bifidobacterium adolescentis ATCC 15703]
          Length = 634

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 70/231 (30%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 69  LIDILQRSGADAVHPG-YGFLSEVASFAQKVLDAGATWVGPNPKALVDLGDKITARRVAT 127

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI ++  D  +    +  
Sbjct: 128 FAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNH 187

Query: 158 SSWNH---GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +       +  +      G  +      D+  + T  +           K         
Sbjct: 188 DALQGGDLDEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQRRNQKLVEEAPASF 247

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LP  +   +       +     A+   G+   +F+      KV++LE+N +
Sbjct: 248 LPDGVLEQLETY----SRRLFDAVDYVGLGTCEFMVTEQ-GKVYFLEVNPR 293


>gi|329894102|ref|ZP_08270087.1| Phosphoribosylglycinamide formyltransferase 2 [gamma
           proteobacterium IMCC3088]
 gi|328923274|gb|EGG30594.1| Phosphoribosylglycinamide formyltransferase 2 [gamma
           proteobacterium IMCC3088]
          Length = 393

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/290 (15%), Positives = 87/290 (30%), Gaps = 38/290 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK    AL+  G +V   D           DRS          
Sbjct: 15  VLLCG--SGE----L--GKEVVIALQRLGVEVIACDRYPNAPAMQVADRSHVLSMLDGDA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   +PD     +     +  +         IP   +  L       +  + + ++
Sbjct: 67  LRAVIEQEQPDYIVPEIEAIATDTLVTLESEGFNVIPTAKAAQLTMNREGIRTLAAETLN 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P ++KP+   S  G  ++K +Q I        +  
Sbjct: 127 LPT-SAYRFADNYDDFQAAVAAIGFPCIVKPIMSSSGKGQSMVKCEQDIERA--WQYAQE 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        V+G       +   ++   +             +          P  + +
Sbjct: 184 GGRAGAGRVIVEGFIDFDYEITLLTVRHIDG--TSFCQPIGHRQEDGDYQESWQPQAMSV 241

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
              ++ + +A     A+G RG+   +         V++ E++ +P   GM
Sbjct: 242 VAREKSEHIAKTITDALGGRGLFGVELFI--KGDDVWFSEVSPRPHDTGM 289


>gi|167835961|ref|ZP_02462844.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis MSMB43]
          Length = 510

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 78/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQLAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDAFK 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+++D  +      +      +  ++++E +V+   
Sbjct: 147 AAVAQIGFPCVVKPVMSSSGKGQSVLRRDADVEPAWQYAMAGGRVNHGRVIVEGFVEFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASLDTHTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|120599959|ref|YP_964533.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp.
           W3-18-1]
 gi|171704634|sp|A1RMT4|PURT_SHESW RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|120560052|gb|ABM25979.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp.
           W3-18-1]
          Length = 391

 Score = 55.3 bits (131), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 80/269 (29%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  ++   KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYANAPAMQVAHRSHVINMLDAKALRAIIELEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  IP   +  L       +  + + +                  
Sbjct: 82  EAIATQTLVEMEAEGVNIIPTARATKLTMDREGIRRLAAETLGLPT-SPYFFCDTETEFN 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P V+KP+   S  G  VI+           +      G   +I +     + 
Sbjct: 141 QAIREIGVPCVVKPVMSSSGKGQSVIRDIAQSNKAWQYAQEGGRAGGGRVIVEGFVPFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++  ++++      P                    P  +  ++  + Q +A    +A
Sbjct: 201 EITLLTVSAVNGIHFCAPIGHRQE-----DGDYRESWQPQAMSDEVLAKSQAIASKVVEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +V++ E++ +P
Sbjct: 256 LGGYGLFGVELFV--KGNEVYFSEVSPRP 282


>gi|13470483|ref|NP_102052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Mesorhizobium
           loti MAFF303099]
 gi|14021225|dbj|BAB47838.1| biotin carboxylase [Mesorhizobium loti MAFF303099]
          Length = 447

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 35/261 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    I +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +   +        I  P +IK   GG   G+ V   +  + + L  + S     +  
Sbjct: 135 DGAVTEEKEAKRIAAEIGYPVIIKASAGGGGRGMKVAHSEADLEVALQTARSEAGAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               + +       +   V GD                    +             +  +
Sbjct: 195 DAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGERDCSLQ----RRHQKVWEEANSPALNAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
               +  +   A   +G  G    +FL+   + + +++E+N +              +  
Sbjct: 251 ERSRIGGICAKAIADLGYSGAGTIEFLY--ENGEFYFIEMNTR----------LQVEHPV 298

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   +  AS
Sbjct: 299 TEAITGI---DLVHEQIRVAS 316


>gi|91200556|emb|CAJ73605.1| strongly similar to biotin carboxylase (A subunit of acetyl-CoA
           carboxylase) [Candidatus Kuenenia stuttgartiensis]
          Length = 448

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 30/181 (16%), Positives = 59/181 (32%), Gaps = 9/181 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +IK   GG   G+ V   D S+   L  +             Y++       
Sbjct: 148 AHEIGFPVIIKASLGGGGRGMRVAHNDISLINSLTIAQREAKAAFKDSSIYIEKYIEDAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +      +         ++          PA    D   +++ + A    ++I 
Sbjct: 208 HIEVQIVGDNYGNIIHLGERDCTMQRRHQKLIEESPAPYITDRAREDICKAAIKMAKSIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +FL D  +   +++E+N +  +       EM    G    +L+   ++ AS  
Sbjct: 268 YTNAGTVEFLLDKENN-YYFIEVNTR--LQVEHPVTEM--VTGI---DLVKLQIKIASGE 319

Query: 300 R 300
           R
Sbjct: 320 R 320


>gi|313895745|ref|ZP_07829301.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
 gi|312975871|gb|EFR41330.1| carbamoyl-phosphate synthase, large subunit [Selenomonas sp. oral
           taxon 137 str. F0430]
          Length = 1075

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/301 (12%), Positives = 99/301 (32%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++ G +V  ++ +                       +  ++A  KP+     
Sbjct: 30  GSQACRSLKEDGLEVVLVNSNPATIMTDTNIADRVYIEPLTVDFLAEIIAKEKPEGLLAT 89

Query: 58  LHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +               +E+  T    +  A   ++ +         +P    +
Sbjct: 90  LGGQAGLNLAVQLAERGILEQHGVELLGTSLDAIEKAEDRERFKETMEKLGEPIPESTIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  + + ++ +   +++  +++   Q+LIE+ 
Sbjct: 150 EDVHSAVEFANKIGYPVIVRPAYTMGGTGGGIAENEEELIAIVIKGLNYSMIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +     D         +F    +                 + Y+ ++  +
Sbjct: 210 VAGWKEIEFEVIRDGRDNCITVCSMENFDPVGVHTGDSIVVAPAQTLTDHE-YQMLRSSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +G  G   + +  D  S + + +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIIRELGIEGGCNAQYALDTQSDRYYVIEVN--PRVSRSS--ALASKATGYPIAKVSSK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 30/294 (10%)

Query: 25  ALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL   G +   I           D+             V  ++   KPD       G   
Sbjct: 582 ALRSMGIEAIIINNNPETVSTDFDISDRLYFEPLTVEDVLNIVDKEKPDGVIVQFGGQTA 641

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         L +  T    +  +   ++       +    P   S+      +     
Sbjct: 642 INLAAALERAGLRVYGTSVDDIDRSEDRERFDEVLTQTGISRPEGISVTNLEDAVAGAKR 701

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        + ++  +  +   + ++        +L+++Y+ G E+    + 
Sbjct: 702 IGYPVMVRPSYVLGGRAMEIVYNEDELRDYMQRAVKVTPDHPVLVDRYMQGTEVEVDAIS 761

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    V    +   +       +S  +     P  +P  +   +         A+  +G+
Sbjct: 762 DGVDVVIPGIMEHIERAG---VHSGDSIAVYPPQTLPARVIYTIIDYTKRLAVALHVKGL 818

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               F+      +VF +E+N +   T     P ++     +   +   +   AS
Sbjct: 819 LNIQFVVAH--DEVFIIEVNPRSSRT----VPFLSKITNVNMVSVATQVAMGAS 866


>gi|294793334|ref|ZP_06758479.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           6_1_27]
 gi|294455765|gb|EFG24130.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           6_1_27]
          Length = 1066

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVTFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   +P        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEQPVGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +    ++   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    ++  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|282850076|ref|ZP_06259458.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           ATCC 17745]
 gi|282580265|gb|EFB85666.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           ATCC 17745]
          Length = 1066

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVTFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   +P        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIDKEQPVGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      ++I  T    +  A   ++            PV   +  +    ++   
Sbjct: 638 ISLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    ++  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|289432100|ref|YP_003461973.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp. GT]
 gi|288945820|gb|ADC73517.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp. GT]
          Length = 498

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 86/281 (30%), Gaps = 37/281 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
                 A  + G K   +  D                             +++  V    
Sbjct: 14  AIRVMRACRELGIKTVAVYSDADKGALFVKYADEAYHIGPSQLSESYLNIKNIVAVAKKS 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      LE   I +         L  +K+ +++ +   GVPV P
Sbjct: 74  GVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARREMKKAGVPVLP 132

Query: 110 SILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   ++        I  P +IKP  GG  +G+ V      +   +  S        
Sbjct: 133 GTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIESSQKVAGNTF 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            L E Y++        +    +  ++  +         ++          P   I  ++ 
Sbjct: 193 GLAEVYIEKYISNPRHIEIQIMGDSQGNIVYLGERECSIQRRYQKLIEESPSPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++  +A  A + +   G    +F+F   + + ++LE N +
Sbjct: 253 KKMGEVAVKAGKWVNYEGAGTIEFIF--SNGQFYFLEANTR 291


>gi|242398056|ref|YP_002993480.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           sibiricus MM 739]
 gi|242264449|gb|ACS89131.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           sibiricus MM 739]
          Length = 429

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 73/290 (25%), Gaps = 32/290 (11%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                    D+     +     PD     +
Sbjct: 28  GKEIAIEAQRLGVEVIAVDRYPNAPAMQVAHKAYVGNMKDKDFLWSIVERENPDAIVPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFELEKEGYFVVPNAKATWIAMHRERTRETLAKEAKVPT-SRYAYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL----LIEQYVDG 174
           D+   I  P   K +   S  G   +K  + IP     +     G             D 
Sbjct: 147 DACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEVAKKKARGSADKIIVEEHINFDI 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                 V             PK   +    +      +   PA+I     +EV R+A   
Sbjct: 207 EITELAVRHFDENGKIVTTFPKPVGHY---QIEGDYHSSWQPAEISEKAEREVYRIAKAI 263

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
              +G  GI   +        KV+  E++ +P      +    +   G+S
Sbjct: 264 TDVLGGLGIFGVEMFV--KGDKVWANEVSPRP--HDTGMVTMASHPTGFS 309


>gi|260642269|ref|ZP_05415190.2| carbamoyl-phosphate synthase, large subunit [Bacteroides finegoldii
           DSM 17565]
 gi|260622906|gb|EEX45777.1| carbamoyl-phosphate synthase, large subunit [Bacteroides finegoldii
           DSM 17565]
          Length = 1082

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 34  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 93

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 94  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 153

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 154 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DILVEKAFSFSPQVLVEK 211

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 212 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 270

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 271 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 322


>gi|154285674|ref|XP_001543632.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
 gi|150407273|gb|EDN02814.1| hypothetical protein HCAG_00678 [Ajellomyces capsulatus NAm1]
          Length = 722

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/288 (18%), Positives = 99/288 (34%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 54  EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 108

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 109 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 168

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P    +  +M+        I  P +IK +KGG   G+ +    ++    L+       
Sbjct: 169 CVPGYHGDNQSMEFLEAEAEKIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 228

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 229 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 288

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 289 ATRKDIWDKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 332


>gi|84501740|ref|ZP_00999912.1| pyruvate carboxylase [Oceanicola batsensis HTCC2597]
 gi|84390361|gb|EAQ02920.1| pyruvate carboxylase [Oceanicola batsensis HTCC2597]
          Length = 1146

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +   +L+            E Y++ + +   
Sbjct: 151 AEEIGFPLMLKASWGGGGRGMRPIENAKELKDKVLEGRREAEAAFGNGEGYLEKMIIRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L   +  +         ++  +       PA    +   +E+  L       + 
Sbjct: 211 HVEVQILGDRQGNIYHLYERDCSVQRRNQKVVERAPAPYLSEAQREELCELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 271 YECAGTVEFLMDMDTGKFYFIEVNPR 296


>gi|161528593|ref|YP_001582419.1| carbamoyl-phosphate synthase large subunit [Nitrosopumilus
           maritimus SCM1]
 gi|160339894|gb|ABX12981.1| carbamoyl-phosphate synthase, large subunit [Nitrosopumilus
           maritimus SCM1]
          Length = 1080

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 100/313 (31%), Gaps = 41/313 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  A+ + G K   I+ +                     + V  V+   +PD    
Sbjct: 29  SGSQCLKAIHEDGLKSVLINPNIATIQTDTRFADQVYLLPVNPQYVESVVEKERPDGIML 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       IL+   +    + +     + D+   K  ++  GVPV  S  
Sbjct: 89  AYGGQTALNCGVKLEEAGILQKYGVKVLGTQVQGIKNTEDRQLFKDQMTEAGVPVLKSKT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            ++ P +++        G  +   +  +   + +  + +   Q+L+E+
Sbjct: 149 VTNVDDAKKVAEELNYPVIVRVAYTLGGRGGGIAHNEIELHEIVERGLNASLVGQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G             D   + V   +       ++  N        I    Y  ++  
Sbjct: 209 YI-GHWKQIEYEVMQDYDGNNVIVCNMENVLSMKVHTGDNIVVAPSQTINNHEYHMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A  A + +G  G     +  D  S +   +EIN  P ++  S        +P     A  
Sbjct: 268 ALRATKHVGIVGECNIQYALDSDSDRYVAIEIN--PRLSRSSALASKATGYPLAYMSAKI 325

Query: 282 --GYSFRELLLWM 292
             GYS  EL+  +
Sbjct: 326 GLGYSLSELVNRI 338



 Score = 39.9 bits (91), Expect = 0.54,   Method: Composition-based stats.
 Identities = 26/225 (11%), Positives = 72/225 (32%), Gaps = 6/225 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +     P      + G    +         + I  T +  +  A    K  ++  
Sbjct: 621 ERLLDITDFENPKGVITCVGGQTANNLTPGLAERGINILGTSAKDVDRAEDRSKFSAELD 680

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
               G P   +             +  P +++P    S   + V+   + +   + +++ 
Sbjct: 681 KLHIGQPRWQAFSNLNEAKSFAQEVGFPVIVRPSYVLSGAAMKVVWSQEELKTYVKEATD 740

Query: 160 WNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    ++I +++ + +E+    + +    V    V   D       +S      + P +
Sbjct: 741 VSPDHPVVISKFMLNSLEVDVDGISNGKEVVIGAIVEHIDSAG---VHSGDAMMCIPPWR 797

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +   I + +             +G     FL +  + +V+ +E+N
Sbjct: 798 LSNKIIETITDYTKRIALTFNVKGPFNLQFLIN--NDQVYVIELN 840


>gi|52842870|ref|YP_096669.1| pyruvate carboxylase subunit A [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52629981|gb|AAU28722.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 471

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/189 (12%), Positives = 54/189 (28%), Gaps = 21/189 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   GI +      I     +  S           Y++     
Sbjct: 145 HCAETLGYPVMLKATFGGGGRGIRLCHDASQIKQQFARVQSEAEKSFGDSHIYMEKYIAN 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +    L      V         ++        + P+    +   + +   A  A + 
Sbjct: 205 PRHIEVQILADHHGTVLHLFERDCSIQRRHQKLVEIAPSPQLDEATRQVLLGYAVKAAKE 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +G       +F+ D  + + +++E+N +              +       G    +L+  
Sbjct: 265 VGYTNAGTVEFILD-KNNRPYFMEMNTR----------LQVEHPITEQITGI---DLVQE 310

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 311 QIRIAAGER 319


>gi|72161461|ref|YP_289118.1| carbamoyl-phosphate synthase large subunit [Thermobifida fusca YX]
 gi|71915193|gb|AAZ55095.1| carbamoyl-phosphate synthase large subunit [Thermobifida fusca YX]
          Length = 1103

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEFADATYVEPITPEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +L+   +    + I A     D+   K+VV   G     S++
Sbjct: 89  TLGGQTALNTAVALHEAGVLDKYGVELIGANIDAIQAGEDRDSFKRVVERVGGESARSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   ++ P V++P       G      ++ +     Q  + +   ++L+E+
Sbjct: 149 CHSIEECLAAAEELNYPVVVRPSFTLGGAGSGFAHNEEELRRIAGQGLALSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELELMRDANDNVIVVCSIENLDPMGVHTGDSITVAPAMTLTDREYQRLRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREVGVDTGGCNIQFAVHPETGRTIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|228991443|ref|ZP_04151396.1| Biotin carboxylase [Bacillus pseudomycoides DSM 12442]
 gi|228768288|gb|EEM16898.1| Biotin carboxylase [Bacillus pseudomycoides DSM 12442]
          Length = 445

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++   ++A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEETRKAMGKVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDKKN-FYFLEMNTR 292


>gi|228997545|ref|ZP_04157158.1| Biotin carboxylase [Bacillus mycoides Rock3-17]
 gi|228762173|gb|EEM11106.1| Biotin carboxylase [Bacillus mycoides Rock3-17]
          Length = 445

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++   ++A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEETRKAMGKVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDKKN-FYFLEMNTR 292


>gi|221211658|ref|ZP_03584637.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD1]
 gi|221169019|gb|EEE01487.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans CGD1]
          Length = 404

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 81/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L       +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAQIEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTWFCEPIGHVQVAGDYVESWQPQPMRAAALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDEVWFSEVSPRP 294


>gi|134281184|ref|ZP_01767893.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 305]
 gi|134247490|gb|EBA47575.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           pseudomallei 305]
          Length = 404

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                  +    
Sbjct: 87  EAIATDALAAIEAAGVCEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSSDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  I      +      +  ++++E ++    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVRSEADIEPAWRYAMAGGRVNHGRVIVEGFIRFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQTRTSFCAPIGHLQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|161524134|ref|YP_001579146.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189351109|ref|YP_001946737.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|160341563|gb|ABX14649.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
 gi|189335131|dbj|BAG44201.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           multivorans ATCC 17616]
          Length = 404

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 81/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D + G  L       +P L    +
Sbjct: 27  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDGAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAQIEAAGLAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAESFDEFA 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAQIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTWFCEPIGHVQVAGDYVESWQPQPMRAAALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDEVWFSEVSPRP 294


>gi|330466969|ref|YP_004404712.1| carbamoyl-phosphate synthase, large subunit [Verrucosispora maris
           AB-18-032]
 gi|328809940|gb|AEB44112.1| carbamoyl-phosphate synthase, large subunit [Verrucosispora maris
           AB-18-032]
          Length = 1122

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 91/311 (29%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVV-----------S 101
            L G    +         +LE   +    + I A     D+   K++V            
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIDAIRRGEDRQLFKEIVAKAGVRLEVADP 148

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              VP            ++   +  P VI+P      LG  +   D+ +        + +
Sbjct: 149 EGLVPRSRVCHSMDEVRETVADLGLPVVIRPSFTMGGLGSGMAHNDEDLERIAGAGLAAS 208

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENIDPMGVHTGDSVTVAPAMTLTDR 268

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +       +  +     G     F  +P   ++  +E+N  P ++  S     +   
Sbjct: 269 EFQQLRDLGIAVLREVGVDTGGCNIQFAINPADGRIVVIEMN--PRVSRSS--ALASKAT 324

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 325 GFPIAKIAAKL 335


>gi|302920967|ref|XP_003053187.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734127|gb|EEU47474.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 708

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A A    K RSK+++++  VP  P    
Sbjct: 116 ALHPGYGFLSENSKFAERCEEEGIVFVGPPATAMADMGHKARSKEIMTAANVPCVPGYHG 175

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I+ P ++K ++GG   G+ ++  +      L  + +          
Sbjct: 176 TEQGEQELLEHAKKITFPVLLKSVRGGGGKGMRIVLTEDEFLTQLKSARAEAKASFGEGG 235

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DIYKE 226
           + +   +              +           +      +   +  +  P        +
Sbjct: 236 EVMLVEKYIVRPRHVEVQVFADKWGNTVALGERDCSVQRRHQKILEESPAPDLDTATQHD 295

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+G  G    +F+ D  + K +++E+N +
Sbjct: 296 LWDKARKAASAVGYVGAGTVEFILDKDTNKFYFMEMNTR 334


>gi|220925868|ref|YP_002501170.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
 gi|219950475|gb|ACL60867.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           nodulans ORS 2060]
          Length = 451

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 70/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L    I +         L  DK+ +K+  +  G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLGHHRIAFIGPKAEHIRLMGDKIEAKRTATRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P +IK   GG   G+ V + ++ +   L  + +        
Sbjct: 135 EGGVADPDEARRIAADIGYPVLIKAASGGGGRGMKVARSEEDLETALATARTEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKE 226
              Y++        +    L                L+          P+     ++ + 
Sbjct: 195 DAVYIEKYLEKPRHIEVQVLGDGRGGAIHLAERDCSLQRRHQKVWEEGPSPALNAEMRER 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +G  G    +FL+     + +++E+N +
Sbjct: 255 IGGICARAMQELGYTGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|300710620|ref|YP_003736434.1| carbamoyl phosphate synthase large subunit [Halalkalicoccus
           jeotgali B3]
 gi|299124303|gb|ADJ14642.1| carbamoyl phosphate synthase large subunit [Halalkalicoccus
           jeotgali B3]
          Length = 1045

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/336 (13%), Positives = 102/336 (30%), Gaps = 53/336 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + ++ GG        +  G+             AL + G +   ++ +            
Sbjct: 568 VVIVGGGP-------IRIGQGVEFDYCTVHAVQALRENGIEAHVVNNNPETVSTDYDTSD 620

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFG------EDGLVQAILELLEIPYTHSGI 84
                      V  V+     D A     G          +  ++      EI  T    
Sbjct: 621 GLFFEPITAEEVADVIEATGADGAMIQFGGQTSVDIGEPLEQEIERRGLDCEIMGTAVDA 680

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +  A   D+            P   +       +D  H I  P +++P        + V+
Sbjct: 681 MDLAEDRDRFNGLMDELGIAQPEGGTATSEAEALDLAHEIGYPVLVRPSYVLGGRAMEVV 740

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +   + ++        +L++++++G +EL    + D    +    +   +     
Sbjct: 741 HSDSELEEYIEEAVRVAPDKPILVDKFLEGGVELDVDAVSDGERVLIGGIMEHVESAG-- 798

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  D    ++ +     +A+   G+            +V+ LE N
Sbjct: 799 -VHSGDSACMIPPRWLEADAMGRIREVVEQIARALDTVGLLNVQLAV--YEGEVYVLEAN 855

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
            +   T     P ++   G    +L   ++  AS  
Sbjct: 856 PRSSRT----VPFVSKATGVPIAKLAARVMAGASLD 887



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 100/303 (33%), Gaps = 42/303 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  +         D               ++  ++   +PD    
Sbjct: 33  SGAQACRALQEEGVRVVLVNSNPATIMTDPEMADKVYIEPITTEAIAEIIEKERPDGVIA 92

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +       + +LE  ++    + +     + D+ + ++ +   G P+  S  
Sbjct: 93  GLGGQTGLNVTAELAEEGVLEEFDVEIMGTPLETIYATEDRDQFRERMEEIGQPMPRSRT 152

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +          + +   P +++        G  V+++   +   + +    +   ++LI 
Sbjct: 153 IESVGEVEDAVEAVGGLPVIMRTTYTLGGSGSGVVEEMDELKESVRRGLRLSRNGEVLIT 212

Query: 170 QYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + + G    E       D S  +            +  + + +  + V+P +   +    
Sbjct: 213 ESISGWVELEYEVMRDADDSCIIICNMENIDPMGIHTGESTVVTPSQVIPDEGHQE---- 268

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           ++  A    + +G +G     F +        +   +E+N  P ++  S     +   GY
Sbjct: 269 MRSAALEVIRDLGIQGGCNIQFAWHDDGTPGGEYRVVEVN--PRVSRSS--ALASKATGY 324

Query: 284 SFR 286
              
Sbjct: 325 PIA 327


>gi|116754555|ref|YP_843673.1| carbamoyl phosphate synthase large subunit [Methanosaeta
           thermophila PT]
 gi|121694744|sp|A0B8K9|CARB_METTP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116666006|gb|ABK15033.1| carbamoyl-phosphate synthase large subunit [Methanosaeta
           thermophila PT]
          Length = 1074

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G +V  +         D D              V  ++   +PD    
Sbjct: 29  SGSQACKSLREEGVEVVLVNSNPATIMTDPDMADKVYIEPLVPEIVAKIIEKERPDGIIA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G  G +       +       +E+  T    +  A   D  +         VP   +
Sbjct: 89  GIGGQTGLNITSELAEMGVLEKYGVEVLGTKVRSIQEAEDRDLFKKAMERIGEPVPRSIA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       ++   +  P +++P       G  V +  + +          +   Q+L+E+
Sbjct: 149 VTSLEEAEEAMKELGLPLIVRPAYTLGGSGGGVARTHEELMRICEMGLKRSRIHQVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G       +   S +         +     +          +      +I + ++  
Sbjct: 209 SVIGWTEVEYEVMRDSNNTCITICNMENMDPMGIHTGESIVVTPIQTLSDHEI-QMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     F     + +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 AINIIRALGIEGGCNIQFAV--RNGEYRVIEVN--PRVSRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 37.9 bits (86), Expect = 1.6,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 92/292 (31%), Gaps = 37/292 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G +   I+ +                       V  V+   +         G   
Sbjct: 577 ALREMGIEAHIINNNPETVSTDYDTSDKLFFEPVTLEDVMNVIEKERYWGVMVQFGGQTA 636

Query: 64  EDGLVQAILELLEIPYTH----SGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFT 117
            +  V    EL           +   +  ++ D+ R  ++++  G+P   +         
Sbjct: 637 VNLAVPLEKELKRRGLKTVILGTSPDSIDIAEDRERFNKLLNKLGIPQPKAGIAYSPEEA 696

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
                 I  P +++P        + ++  +  + L + ++   +H   +LI+ +  + +E
Sbjct: 697 KRVAKEIGYPVLVRPSYVLGGRAMEIVYDESGLELYMREAVRVSHEHPVLIDDFLQNAVE 756

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +           ++  + P  +P D+   V+        
Sbjct: 757 IDVDAVSDGRDVLIGAIMEHIEEAGIHSG---DSACMIPPQTLPEDVIATVKDYVRRIAL 813

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A+  +GI      +      V+ LE N +   T     P ++   G    ++
Sbjct: 814 ALDVKGIINIQMAY--KDGIVYVLEANPRSSRT----IPFVSKAVGLPLAKI 859


>gi|225437102|ref|XP_002273573.1| PREDICTED: hypothetical protein [Vitis vinifera]
 gi|296085234|emb|CBI28729.3| unnamed protein product [Vitis vinifera]
          Length = 735

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/160 (14%), Positives = 50/160 (31%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              +     F       I  P +IKP  GG   G+ +++         L +         
Sbjct: 166 YHGNEQDIDFMKSEGEKIGYPVLIKPTHGGGGKGMRIVQSPSEFVEAFLGAQREAAASFG 225

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
           +    ++        +           V   +     ++          P   I  D   
Sbjct: 226 INTILLEKYITKPRHIEVQIFGDKFGNVLHLNERDCSVQRRHQKIIEEAPAPNIVNDFRT 285

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + + A  A +A+G       +F+ D +S + +++E+N +
Sbjct: 286 HLGQAAVSAAKAVGYHNAGTVEFIVDTISGQFYFMEMNTR 325


>gi|331270309|ref|YP_004396801.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           BKT015925]
 gi|329126859|gb|AEB76804.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           BKT015925]
          Length = 1063

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ++++ G +   ++ +                      ++  ++   KP+    
Sbjct: 29  SGTQACKSIKEEGIETILVNSNPATIMTDLNIADKVYIEPLNVEAIEKIIQKEKPNGILA 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  ++           +++   +   +  A   ++ +   +     +P    
Sbjct: 89  GFGGQTALNIAMELQSKGVLEKYNVKLLGINGESIKKAEDREEFKDLMLQIGEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +       P +I+P       G  +    +            +  +Q+L+E+
Sbjct: 149 AVNIEECKEFVEKHGLPIIIRPAYTLGGTGGGIANTMEEYLQICDLGLKMSPINQILLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   +       ++  +        +    Y  ++  
Sbjct: 209 SVAGW-KELEYEVIRDKKDNCIIICNMENIDPVGVHTGDSIVVAPSQTLTDKEYHMLRNS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  DP+S K   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRSLKIEGGCNIQFALDPISNKYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 98/282 (34%), Gaps = 30/282 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFN----------VLHGNFGED 65
           A+ +AG++   +         D D S  L    L  D   N          +L       
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLYIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L    +    +   +  L+ D+ + ++++ S  +       +   +        
Sbjct: 640 INLAEKLAKRGVNILGTSFKSIDLAEDREKFRELLESLDIKTPTGRPVTCIKEAYKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSTEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  D+  ++        +A+   G+
Sbjct: 760 DGEDVLMPGIMEHIERTG---VHSGDSITVYPYMTLKEDVIDKLVDNTKKIAKALKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               ++FD     ++ +E+N +   T     P ++   G   
Sbjct: 817 MNIQYVFDGKD--IYVIEVNPRASRT----VPILSKVTGVPM 852


>gi|260460716|ref|ZP_05808966.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
 gi|259033293|gb|EEW34554.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium
           opportunistum WSM2075]
          Length = 447

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/261 (14%), Positives = 76/261 (29%), Gaps = 35/261 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    I +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +   +        I  P +IK   GG   G+ V   +  + + L  + S     +  
Sbjct: 135 DGAVTEEKEAKRIAAEIGYPVIIKASAGGGGRGMKVAHTEADLEVALQTARSEAGAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               + +       +   V GD                    +             +  +
Sbjct: 195 DAVYIEKYLQKPRHIEVQVFGDGFGRGVHFGERDCSLQ----RRHQKVWEEANSPALNAE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
               +  +   A   +G  G    +FL+   + + +++E+N +              +  
Sbjct: 251 ERSRIGSICATAIADLGYSGAGTIEFLY--ENGEFYFIEMNTR----------LQVEHPV 298

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   +  AS
Sbjct: 299 TEAITGI---DLVHEQIRVAS 316


>gi|224540076|ref|ZP_03680615.1| hypothetical protein BACCELL_04989 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224518307|gb|EEF87412.1| hypothetical protein BACCELL_04989 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1077

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIYTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       + E   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYKDGVFEKYGVKVLGTPVQAIINTEDREIFVHKLNEINVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 148 VENAIDARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|322788220|gb|EFZ14002.1| hypothetical protein SINV_14534 [Solenopsis invicta]
          Length = 693

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 43/288 (14%), Positives = 88/288 (30%), Gaps = 32/288 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLA-----FNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +S    L   K            +H   G   E+     + +   I +    
Sbjct: 66  EAYCIGPAQSNQSYLRQDKIISVAKQAKCQAIHPGYGFLSENTEFAELCQKENIIFIGPP 125

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK ++++ GVP+         T ++       I  P +IK ++GG   
Sbjct: 126 ASAIRDMGIKNTSKAIMTNAGVPIIEGYHGEDQTNETLLAEAKKIGFPLMIKAVRGGGGK 185

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ + +K+      L  + + +          ++        +                 
Sbjct: 186 GMRIAQKESDFVEALESARTESEKSFGDSAVLLEKYVAEPRHVEVQIFADKHGNAVYLFE 245

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          PA  I   + +E+   A  A +A+G  G    +F+ D       
Sbjct: 246 RDCSVQRRHQKVIEEAPAPGISQQLRQEIGEAAVRAAKAVGYVGAGTVEFIMDRNDHSFH 305

Query: 259 WLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
           ++E+N +              +       G    +L+ W +  AS  +
Sbjct: 306 FMEMNTR----------LQVEHPVTEAITGL---DLVEWQLRVASGEK 340


>gi|121602177|ref|YP_989057.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bartonella
           bacilliformis KC583]
 gi|120614354|gb|ABM44955.1| acetyl-CoA carboxylase, biotin carboxylase [Bartonella
           bacilliformis KC583]
          Length = 446

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/282 (16%), Positives = 88/282 (31%), Gaps = 45/282 (15%)

Query: 22  CASALEDAGFKVSQID----------------------VDRSVGLVLAHL-------KPD 52
              A ++ G K   I                         R   L +  +         D
Sbjct: 17  VLRACKELGIKTVAIHSTADADAMHVRLSDESVCIGPPPSRDSYLNIQQIISACEITGAD 76

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
                 +G   E+     ILE   I +            DK+ +K+     G+P+ P   
Sbjct: 77  AVHPG-YGFLSENAKFADILEAHNITFIGPTAAHIRTMGDKIEAKKTAKQLGIPIVPGSD 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
             +  +       H I  P +IK   GG   G+ V++ ++ + + L  + S     +N  
Sbjct: 136 GAVTEDADAFRIAHEIGYPVIIKASAGGGGRGMKVVRSEKELSVALHTARSEAGAAFNDD 195

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +       +   VMGD + +   +            K     ++  L       I
Sbjct: 196 SVYIEKYLEKPRHIEIQVMGDGAGNAIHLGERDCSLQRRHQKVWEEANSPALDESKRKKI 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              V          +G RG    +FL+   + + +++E+N +
Sbjct: 256 GDIVANACAK----LGYRGAGTIEFLY--ENSEFYFIEMNTR 291


>gi|312884761|ref|ZP_07744462.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
 gi|309367674|gb|EFP95225.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           caribbenthicus ATCC BAA-2122]
          Length = 447

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAINSMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   ++        I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLNDDDQANKAHAKRIGYPVIIKASGGGGGRGMRVVRSESELVEAIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|156146808|gb|ABU53416.1| D-alanylalanine synthetase [Streptococcus oralis Uo5]
 gi|156146898|gb|ABU53461.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|89055272|ref|YP_510723.1| pyruvate carboxylase [Jannaschia sp. CCS1]
 gi|88864821|gb|ABD55698.1| pyruvate carboxylase [Jannaschia sp. CCS1]
          Length = 1146

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  I  +  +   +L+            E Y++ + L   
Sbjct: 151 AKEVGYPLMLKASWGGGGRGMRPIASEDELEEKVLEGRREAEAAFGNGEGYLEKMILRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +    L  +   +         ++  +       PA    D+ +    L      + + 
Sbjct: 211 HVEVQILGDSHGNIYHLYERDCSVQRRNQKVVERAPAPYLTDMQRNEICLLGKKICEHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  S + +++E+N +
Sbjct: 271 YECAGTVEFLMDMDSGQFYFIEVNPR 296


>gi|15602918|ref|NP_245990.1| phosphoribosylglycinamide formyltransferase 2 [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|81856733|sp|Q9CLZ5|PURT_PASMU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|12721388|gb|AAK03137.1| Pur [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 393

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 83/300 (27%), Gaps = 38/300 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAQQVAHRAYTISMLDGEALKALVEKEKPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQAGFTVIPTAKATQLTMNREGIRRLAAEELGLPT-SNYQFVDNFDDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  ++K  + IP       +   G        V+G    
Sbjct: 143 RAVEKIGIPCVVKPIMSSSGHGQSILKSVEQIPSA--WEYAQQGGRAGAGRVIVEG---F 197

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-LNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                + +L         S                   P  +     ++ Q +A     A
Sbjct: 198 VKFDYEITLLTVRHVHGTSFLAPIGHIQIDGDYRESWQPQAMSAVALEKAQAIAEKITGA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFREL 288
           +G RGI   +        +V + E++ +P   GM       +S F   A    G    ++
Sbjct: 258 LGGRGIFGVEMFVC--GDEVIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPDI 315


>gi|320450057|ref|YP_004202153.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           scotoductus SA-01]
 gi|320150226|gb|ADW21604.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           scotoductus SA-01]
          Length = 445

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++  ++ +   + Q+             Y++   +   
Sbjct: 146 AQEIGYPVILKASAGGGGRGMRLVHTEEELERAVQQAQEEARAAFGNPAIYLE-KYIEEP 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +  +      V         ++          P+ +P +  K +   A    + +G 
Sbjct: 205 KHIEIQVLGDGENVIHLWERDCSIQRRHQKLLEEAPSTLPWETRKAIAEAAARLARYVGY 264

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 +FL D      +++E+N +
Sbjct: 265 VSAGTLEFLVDKEGN-FYFIEMNTR 288


>gi|296102545|ref|YP_003612691.1| putative allophanate hydrolase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
 gi|295057004|gb|ADF61742.1| putative allophanate hydrolase [Enterobacter cloacae subsp. cloacae
           ATCC 13047]
          Length = 1200

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 63/184 (34%), Gaps = 16/184 (8%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++K   GG  +G+ V    + +             +      +++     
Sbjct: 145 HAAAEVGYPVMLKSTAGGGGIGMRVCYHAEELRDAFDAVVRLGKNNFSDAGVFIEKYIER 204

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +        +  V         ++  +       PA    D +   +   A    QA
Sbjct: 205 ARHLEVQLFGDGKGEVIALGVRDCSVQRRNQKVLEETPAPNLPDGMEAALCEAAIKLGQA 264

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +  R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+
Sbjct: 265 VNYRSAGTVEFVYDSDAARFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMI 313

Query: 294 EDAS 297
           + A+
Sbjct: 314 DLAA 317


>gi|289739867|gb|ADD18681.1| methylcrotonoyl-coenzyme A carboxylase 1 alpha [Glossina morsitans
           morsitans]
          Length = 702

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 80/312 (25%), Gaps = 46/312 (14%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAH-----------------LKPDLAFN-------- 56
                   G +   I  D     +                    L+ D   N        
Sbjct: 45  VIRTARKLGVRTVAIYSDPDEHSLHTQYADEAYHVGEAASAKSYLRADRIINIAKQADCQ 104

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            +H  +G         EL +          S+   D        +       P I     
Sbjct: 105 AIHPGYGFLSESVEFAELCQREGVIFMGPPSSAIRDMGIKSTSKAIMSAAGVPIINGYHG 164

Query: 117 TMD-------SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I  P +IK ++GG   G+ V  K       L  + + +        
Sbjct: 165 DDQSNDRLQAEAEKIGFPLMIKAVRGGGGKGMRVADKADDFMTALNSARTESQKSFGDSS 224

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
             ++    +   +                     ++          PA     D+ + + 
Sbjct: 225 VLLERYVRSPRHVEVQVFADQYGEAVYLWERDCSVQRRHQKIIEEAPAPGLSDDLRRALG 284

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSF 285
             A  A +A+G  G    +F+ D       ++E+N +  +    P+S           + 
Sbjct: 285 EAAVRAAKAVGYVGAGTVEFIMDKEDLSFHFMEMNTR--LQVEHPISEM--------ITG 334

Query: 286 RELLLWMVEDAS 297
            +L+ W +  A+
Sbjct: 335 TDLVEWQIRIAA 346


>gi|307353852|ref|YP_003894903.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoplanus
           petrolearius DSM 11571]
 gi|307157085|gb|ADN36465.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoplanus
           petrolearius DSM 11571]
          Length = 492

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/280 (11%), Positives = 76/280 (27%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLV--------LAHLKP-------DLAF------ 55
                    + G +   +  + DR+   V        L    P       D         
Sbjct: 16  AIRIMRGCRELGIETVAVFSEPDRNALHVKYADEAYLLGAAPPKESYLNMDRILKIAKSS 75

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----P 106
               +H   G   E+       E     +      +      K+ SK ++   GV     
Sbjct: 76  GAEAIHPGYGFLAENSKFAKYCEEEGQTFIGPSWKSIEAMGSKLGSKHMMDKAGVPVLPY 135

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +            I  P ++K   GG  +G+ +++ ++ +   + +          
Sbjct: 136 THDGVKDIDEAKRVAKDIGYPVIVKASAGGGGIGMQIVENEEELENAIEKGMRIAESAFG 195

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
               +++   +    +    L                ++          P   +  ++ +
Sbjct: 196 DSTVFIEKYLVKPRHIEFQVLCDKHGNRVHLYDRECSIQRRHQKLVEEAPCPIMTDELRE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A    +A G       +FL+       +++E+N +
Sbjct: 256 RMSESALKVAEASGYYNAGTVEFLYSE--GNYYFMEMNTR 293


>gi|156146862|gb|ABU53443.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|89069674|ref|ZP_01157011.1| Pyruvate carboxylase [Oceanicola granulosus HTCC2516]
 gi|89044754|gb|EAR50860.1| Pyruvate carboxylase [Oceanicola granulosus HTCC2516]
          Length = 1147

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+    +   + +            E Y++ +    
Sbjct: 150 QADEIGYPLMLKASWGGGGRGMRPIESADELEDKVREGRREAEAAFGNGEGYLEKMITRA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L   E  +         ++  +       PA    D   + +  L     + +
Sbjct: 210 RHVEVQILGDKEGNIYHLWERDCSVQRRNQKVVERAPAPYLSDAQRERLCNLGKKICEHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D  S + +++E+N +
Sbjct: 270 SYECAGTVEFLMDMESGEFYFIEVNPR 296


>gi|229916255|ref|YP_002884901.1| acetyl-CoA carboxylase, biotin carboxylase [Exiguobacterium sp.
           AT1b]
 gi|229467684|gb|ACQ69456.1| acetyl-CoA carboxylase, biotin carboxylase [Exiguobacterium sp.
           AT1b]
          Length = 447

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 31/211 (14%), Positives = 71/211 (33%), Gaps = 4/211 (1%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGIL---ASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
           +G   E+     + E   I +            +  +  R+        VP    ++ + 
Sbjct: 80  YGFLAENAEFAEMCEACGIQFVGPSSYAIRKMGIKDEAKRTMIESGVPVVPGSSGVVTDE 139

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             M+    +  P +IK   GG   GI V + +  +   L+ +           + Y++  
Sbjct: 140 EAMELAREMGYPVIIKATAGGGGRGIRVARDEDELVSGLVATRKEAKQAFGNGDVYLEKF 199

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
             +   +    L      V         ++          P+    +  +++    A  A
Sbjct: 200 IESFRHVEVQVLADQFGNVIHLGERDCTIQRRMQKLVEEAPSPAIDETTRQLMGDAAVKA 259

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +AI   G    +F++ P S + +++E+N +
Sbjct: 260 AKAIQYSGAGTIEFIYVPESNEFYFMEMNTR 290


>gi|290990329|ref|XP_002677789.1| methylcrotonyl-CoA carboxylase [Naegleria gruberi]
 gi|284091398|gb|EFC45045.1| methylcrotonyl-CoA carboxylase [Naegleria gruberi]
          Length = 701

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 59/186 (31%), Gaps = 18/186 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ +   ++     L  +              ++    T  
Sbjct: 180 AKKIGFPILIKAVLGGGGKGMKLAHSEKEFKEALSSAKREAKASFGDDRVLIEKYIQTPR 239

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       T             ++          PA     ++ + +   A  A +A+G
Sbjct: 240 HIEIQVFADTHGNCVYLFERDCSVQRRHQKIIEEAPAPGLADEVRRAMGESAVDAARAVG 299

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D      +++E+N       P         EM      + ++L+ W ++
Sbjct: 300 YVGAGTVEFIMDNADNSYYFMEMNTRLQVEHP-------VTEM-----ITGQDLVEWQLQ 347

Query: 295 DASCLR 300
            AS  R
Sbjct: 348 VASGNR 353


>gi|261494317|ref|ZP_05990811.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
 gi|261309966|gb|EEY11175.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           serotype A2 str. OVINE]
          Length = 421

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                   +D + +  ++   KPD     +
Sbjct: 52  GKEVVIELQRLGVEVIAVDRYDNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEV 111

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 112 EAIATATLVELEQEGYNVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEQFQ 170

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 171 QAIQEIGIPCVVKPIMSSSGHGQSVIKSEADIQQAW---------DYSQQGGRAGGGRVI 221

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V      S+                  P ++     K+ Q  A  
Sbjct: 222 VEGFIKFDYEITQLTVRHIHGTSFLAPIGHIQVDGDYRESWQPQQMSGIALKKAQETAEK 281

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P  T         +S F   A    G  
Sbjct: 282 ITSALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGIVTMASQELSQFALHARAILGLP 339

Query: 285 FREL 288
             E+
Sbjct: 340 IPEI 343


>gi|86137698|ref|ZP_01056274.1| pyruvate carboxylase [Roseobacter sp. MED193]
 gi|85825290|gb|EAQ45489.1| pyruvate carboxylase [Roseobacter sp. MED193]
          Length = 1149

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 43/146 (29%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  I     +   +L+            E Y++ +     
Sbjct: 151 ASEVGYPLMLKASWGGGGRGMRPIHGPDELEEKVLEGRREAEAAFGNGEGYLEKMITRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +    L      +         ++  +       PA    +  +             + 
Sbjct: 211 HVEVQILGDKHGEIYHLFERDCSVQRRNQKVVERAPAPYLSEEQRAEICELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  S K +++E+N +
Sbjct: 271 YECAGTVEFLMDMESGKFYFIEVNPR 296


>gi|198282514|ref|YP_002218835.1| acetyl-CoA carboxylase, biotin carboxylase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218667890|ref|YP_002424704.1| acetyl-CoA carboxylase, biotin carboxylase [Acidithiobacillus
           ferrooxidans ATCC 23270]
 gi|198247035|gb|ACH82628.1| acetyl-CoA carboxylase, biotin carboxylase [Acidithiobacillus
           ferrooxidans ATCC 53993]
 gi|218520103|gb|ACK80689.1| acetyl-CoA carboxylase, biotin carboxylase [Acidithiobacillus
           ferrooxidans ATCC 23270]
          Length = 448

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+  +  +      + +           Y++    T  
Sbjct: 149 AREIGYPVILKAAGGGGGRGMRVVHTEAHLVNAASLTRAEADKAFGNPTLYMEKFLETPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L  T+            ++          PA  +      E+      A + +G
Sbjct: 209 HIEFQILCDTQGHCIHLGERDCSVQRRHQKVIEEAPAPGVSAAQRAEIGASVAKACEDMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+DP ++  +++E+N +
Sbjct: 269 YRGAGTVEFLYDPENQTFYFIEMNTR 294


>gi|163784873|ref|ZP_02179646.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
 gi|159879859|gb|EDP73590.1| biotin carboxylase [Hydrogenivirga sp. 128-5-R1-1]
          Length = 472

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 97/320 (30%), Gaps = 60/320 (18%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLAHLKP-DLA---- 54
                 A ++ G K   I                        +   L   K  D+A    
Sbjct: 13  ATRIIRACKELGIKTVAIYSEVDSKGLWVKKADEAYMIPGDPIKAYLNFYKIVDIARSTG 72

Query: 55  FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
            + +H   G   E+       E   I +         L  DK++SK+ +   GVPV P  
Sbjct: 73  VDAIHPGYGFLSENADFARYCEKRGIIFIGPKAQHIELFGDKIKSKKAMREAGVPVLPGT 132

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNH 162
              I            I  P +IK   GG   G+ V+KK+                 + +
Sbjct: 133 DEPITDLEEAKKVAKKIGFPVIIKAAYGGGGRGMRVVKKENEFEELFKSATAEAEKFFGN 192

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G   + +   +   +   V+ D   +V  +            +             +  +
Sbjct: 193 GAVFIEKYVENPRHIEVQVIADKYGNVIHLGERDCSIQ----RRHQKVIEIAPSPSLSEE 248

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           + +E+ R++  +   +G   +   +FL D      +++E+N +              +  
Sbjct: 249 VRRELYRVSVKSMFKLGYESVGTLEFLVDENDN-FYFIEMNTR----------IQVEHPV 297

Query: 281 ----AGYSFRELLLWMVEDA 296
                G    +LL  M+E A
Sbjct: 298 TELVTGV---DLLQRMIEIA 314


>gi|83954005|ref|ZP_00962726.1| pyruvate carboxylase [Sulfitobacter sp. NAS-14.1]
 gi|83841950|gb|EAP81119.1| pyruvate carboxylase [Sulfitobacter sp. NAS-14.1]
          Length = 1146

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 18/147 (12%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   G+  I  ++ +   +++            E Y++ + L  
Sbjct: 150 QAAEVGYPLMLKASWGGGGRGMRPIANEEELKEKVMEGRREAEAAFGNGEGYLEKMILKA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAI 238
             +    L  +   +         ++  +       PA    +  +             +
Sbjct: 210 RHVEVQILGDSHGEIYHLFERDCSVQRRNQKVVERAPAPYLTEEQRAEICELGRKICAHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D    K +++E+N +
Sbjct: 270 NYECAGTVEFLMDMDDSKFYFIEVNPR 296


>gi|325292689|ref|YP_004278553.1| Biotin carboxylase [Agrobacterium sp. H13-3]
 gi|325060542|gb|ADY64233.1| Biotin carboxylase [Agrobacterium sp. H13-3]
          Length = 448

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         L  DK+ +KQ     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILDAHGITFIGPTAEHIRLMGDKITAKQTAQELGIPVVPGS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     ++    I  P +IK   GG   G+ V K +  +   +  + S      G+ 
Sbjct: 135 DGEVKPENALEIARTIGFPVLIKATAGGGGRGMKVAKTEADLDEAVSTARSEAAAAFGND 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      V      +    A+   +      +             + ++   
Sbjct: 195 AVYMEKYLGKPRHIEVQVFGDGEG--NAIHLGERDCSLQRRHQKVLEEANSPALTVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  +   A + +  RG    +FL+   + + +++E+N +
Sbjct: 253 KIGEICASAMRKLKYRGAGTIEFLY--ENGEFYFIEMNTR 290


>gi|300869897|ref|YP_003784768.1| carbamoyl phosphate synthase large subunit [Brachyspira pilosicoli
           95/1000]
 gi|300687596|gb|ADK30267.1| carbamoyl phosphate synthase large subunit [Brachyspira pilosicoli
           95/1000]
          Length = 1067

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 104/301 (34%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFNV 57
           G     +L++ G++V  I+                    ++      ++   +PD     
Sbjct: 34  GTQACQSLKEEGYEVVLINSNPATIMTDAAIADKVYIEPINLDFAKRIIYKERPDAILGS 93

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G  G + +V+     IL+   +    + + A   + D+   K++++    PV  S++V
Sbjct: 94  LGGQTGLNLVVELAESGILDEYNVEVLGTDLNAINTAEDRELFKKLMNDINEPVPESVIV 153

Query: 114 N--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           +     ++  + I    V++P       G    + ++ +          +   + L+E+ 
Sbjct: 154 HSVEEAIEFANKIGYHLVVRPAYTLGGTGGGFARNEKELIEICETGLKISPVHECLVEKS 213

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             +   I V   +       ++  +        +     + ++ ++
Sbjct: 214 IAG-YKEIEYEVMRDNNDNAIVVCNMENVDPVGIHTGDSIVVAPCQTLSDRENQMLRNVS 272

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G        DP S K + +E+N  P ++  S     +   GY   ++   
Sbjct: 273 LKIIRALKICGGCNVQLALDPNSFKYYIIEVN--PRVSRSS--ALASKATGYPIAKISAK 328

Query: 292 M 292
           +
Sbjct: 329 I 329



 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 89/279 (31%), Gaps = 30/279 (10%)

Query: 26  LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           + +AG++   I+ +                       V  ++   KP        G    
Sbjct: 585 IREAGYEAIVINNNPETVSTDFSISDKLYFEPLTIEDVMHIVELEKPKGVIVQFGGQTAI 644

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   + ++  + I  T    +  A    +        +   P   + +     +   + I
Sbjct: 645 NLAEKLVMHGVNILGTSLENINRAEDRHEFEEMLKTLNIPQPKGKTAITVDEALVIANKI 704

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMG 183
             P +++P        + ++  D ++ + +  +         +LI++Y+ G E+    + 
Sbjct: 705 GYPVLVRPSYVLGGRAMEIVYNDAALKIYMETAVKEVSNKAPILIDKYIVGKEIETDAIS 764

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D+  +V    + +    +      S++     P  I   +   +        +     G+
Sbjct: 765 DSEHNVFIPGIMEHIERAGIHSGDSISVYP--PQTISKKVKDSIIDYTKRIGEGFNFIGL 822

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM 277
               F+ D     V+ LE+N       P ++ ++  P  
Sbjct: 823 YNIQFIVDKDDN-VYVLEVNPRSSRTVPFLSKITNVPMA 860


>gi|261493649|ref|ZP_05990168.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
 gi|261310649|gb|EEY11833.1| phosphoribosylglycinamide formyltransferase [Mannheimia haemolytica
           serotype A2 str. BOVINE]
          Length = 421

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 85/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                   +D + +  ++   KPD     +
Sbjct: 52  GKEVVIELQRLGVEVIAVDRYDNAPAQQVAHRAYTISMLDGNALRDLVEKEKPDFIVPEV 111

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +          +       
Sbjct: 112 EAIATATLVELEQEGYNVIPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNFEQFQ 170

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 171 QAIQEIGIPCVVKPIMSSSGHGQSVIKSEADIQQAW---------DYSQQGGRAGGGRVI 221

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V      S+                  P ++     K+ Q  A  
Sbjct: 222 VEGFIKFDYEITQLTVRHIHGTSFLAPIGHIQVDGDYRESWQPQQMSGIALKKAQETAEK 281

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P  T         +S F   A    G  
Sbjct: 282 ITSALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGIVTMASQELSQFALHARAILGLP 339

Query: 285 FREL 288
             E+
Sbjct: 340 IPEI 343


>gi|225028541|ref|ZP_03717733.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
 gi|224954142|gb|EEG35351.1| hypothetical protein EUBHAL_02820 [Eubacterium hallii DSM 3353]
          Length = 1154

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 89/285 (31%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------VDRSVGLVLAHLKPDLAFN---------- 56
                 AL + G     I              D S  L       D   +          
Sbjct: 22  AIRIFRALSELGITTVSIYSKEDRYAMFRSKADESYPLNPQKGPIDAYLDIDTIIKIALS 81

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +   G        DK+ SK++     VP+ P
Sbjct: 82  TGVDAIHPGYGFLSENPDFADACERNGIVFIGPGSNIMNAMGDKISSKKIAIEANVPIIP 141

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKD----QSIPLDLLQSSSWN 161
            +      +D    I+     P ++K   GG   G+ ++ ++    +       +S    
Sbjct: 142 GVDYAIKEVDEAKKIAAQVGYPVMLKASNGGGGRGMRIVNREEDLEKEFNEAKNESKKAF 201

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + IE+Y+ G   +   ++GD   +V  +            K         +P  + 
Sbjct: 202 GDDMIFIEKYLKGPKHIEVQIVGDNYGNVVHLYDRDCSVQRRHQKVVEYAPAFSIPETVR 261

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I+      +    + +G R     +FL D      +++E+N +
Sbjct: 262 QEIFD----ASIRLAKTVGYRNAGTLEFLVDA-DNHPYFIEMNPR 301


>gi|302887094|ref|XP_003042436.1| hypothetical protein NECHADRAFT_86550 [Nectria haematococca mpVI
           77-13-4]
 gi|256723346|gb|EEU36723.1| hypothetical protein NECHADRAFT_86550 [Nectria haematococca mpVI
           77-13-4]
          Length = 359

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 91/318 (28%), Gaps = 54/318 (16%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVL---AHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               ALE  G +V      +++   +    H   D+ FN   G+ G     Q    L E 
Sbjct: 41  GITEALERLGHRVVHAPGLKALIKDIAANKHKNWDVVFNYSKGSHGTARESQVPAILEEY 100

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIK---PLK 134
               +             S   + +    V P    +         +S P  +K     +
Sbjct: 101 QIPFT------------FSDAEIRTSPYVVVPKFDDDPLDYSELKKLSYPLFVKPTSCPQ 148

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
                    I K + +  ++ Q  S     ++LIE ++ G E T  + G           
Sbjct: 149 CNGITCANKILKPKDLEHEVDQLRSQFKDQEILIENFLGGREFTLAIAGTGEDAHVVGIA 208

Query: 195 PKSDFYSYELKYSSLNSTHVL----------------PAKIPLDIYKEVQRLAFLAHQAI 238
                         +     +                   +   ++ E+  L+  A+ A+
Sbjct: 209 ELIWNPHTLRAKDMIPVDFSIALARMARSVSKGFSLEDVPLSDPLWDELADLSLKAYTAL 268

Query: 239 GCRGISRSDFLFD--PLSRKVFWLEI-----------------NVQPGMTPV-SIFPEMA 278
           GCR   R D              +E+                 +   GM P  S +  +A
Sbjct: 269 GCRDGGRVDIRLTSEEQGSAPCVIEVPSSCQAVSLLSTDAIQVDPIFGMRPDRSRYAFIA 328

Query: 279 AYAGYSFRELLLWMVEDA 296
              G  + E++   ++ A
Sbjct: 329 KSNGVEYPEMIQDFLDIA 346


>gi|254418886|ref|ZP_05032610.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas sp.
           BAL3]
 gi|196185063|gb|EDX80039.1| carbamoyl-phosphate synthase, large subunit [Brevundimonas sp.
           BAL3]
          Length = 1099

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ + +                     V  ++A  +PD    
Sbjct: 29  SGVQACKALKAEGYRVILVNSNPATIMTDPEVADATYIEPITPEMVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+   +    +       + D+ + +  +   G+    S  
Sbjct: 89  TMGGQTALNTALALDASGALKKYGVEMIGAKAEVIDKAEDRQKFRDAMDKLGLESPRSKA 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      + L     P VI+P    +  G  +    +     +L+    +   ++LIE+
Sbjct: 149 AHSMEEALEGLEYVGLPAVIRPSFTLAGTGGGIAFNREEFEEIVLRGLDLSPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +     
Sbjct: 209 SVLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQRMRTGS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 INVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 9/160 (5%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V++P       G++++   + +   + ++   +  D +LI+ Y++       V    
Sbjct: 724 YPVVLRPSYVLGGRGMMIVHDREQLDRYVHEAMRVSGSDPVLIDHYLN-RATEVDVDALC 782

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   +A    +       +S  ++  + P  +  +   E++R      +A+  RG+  
Sbjct: 783 DDETVFVAG-VLEHIEEAGVHSGDSACSMPPWSLSAETVAELKRQTTEMAKALKVRGLMN 841

Query: 246 SDFLFDP---LSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             F  +     + ++F LE+N +   T     P +A   G
Sbjct: 842 VQFAIEEPHSENPRIFVLEVNPRASRTA----PFVAKTIG 877


>gi|167562074|ref|ZP_02354990.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           oklahomensis EO147]
          Length = 393

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALASIEAAGIAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAQSFDEFK 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K+D  +      +      +  ++++E +V    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVKRDADVESAWQYAMAGGRVNHGRVIVEGFVQFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASLETRTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|260774376|ref|ZP_05883290.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio metschnikovii
           CIP 69.14]
 gi|260610503|gb|EEX35708.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio metschnikovii
           CIP 69.14]
          Length = 449

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 16  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAKGIDSYLNIPRIISAAEVT 75

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 76  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 135

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ +  +   +  + +   G  
Sbjct: 136 SDGPLDGDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELITAINMTRAEAKGAF 195

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L   +            ++          PA  I  ++ 
Sbjct: 196 NNDMVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGINEEVR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 256 KYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 294


>gi|149915879|ref|ZP_01904403.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           AzwK-3b]
 gi|149810202|gb|EDM70048.1| carbamoyl-phosphate synthase large subunit [Roseobacter sp.
           AzwK-3b]
          Length = 1092

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      IL+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTALAVADMGILDKYGVELIGANRQAIEMAEDRKLFREAMDRLGIENPAATI 138

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N           +  P +I+P       G  V                 +   Q+LI++
Sbjct: 139 ANTLDEAMAALDTVGLPAIIRPAYTLGGTGGGVAYNRDDYERICKSGLDASPVSQILIDE 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +        
Sbjct: 199 SLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALTLTDKEYQIMRNLS 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   +  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 259 IAVLREIGVETGGSNVQWAINPENGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 314

Query: 291 WM 292
            +
Sbjct: 315 KL 316



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 554 VVILGGGPN-------RIGQGIEFDYCCCHACFALSDTGYETIMINCNPETVSTDYDTSD 606

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 607 RLYFEPLTFEHVMEILRVELENGTLHGVIVQFGGQTPLKLAKALEAEGIPILGTSPDAID 666

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 667 LAEDRERFQALVNQLGLKQPKNGIASTDKQALAIADEIGFPLVIRPSYVLGGRAMEIVRD 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE     + D         +   +       
Sbjct: 727 MAHLERYIAEAVVVSGDSPVLLDGYLSGAIECDVDALCDGETVHVAGIMQHIEEAG---V 783

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++       +A+   G+    F        ++ +E+N +
Sbjct: 784 HSGDSACSLPPYSLRPETIAEIKTQTEALARALNVVGLMNVQFAV--KGDDIYLIEVNPR 841

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 842 ASRT----VPFVAKAT 853


>gi|87125678|ref|ZP_01081522.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           RS9917]
 gi|86166654|gb|EAQ67917.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           RS9917]
          Length = 1107

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 97/314 (30%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL   GF+V  +         D D              V  V+   +PD    
Sbjct: 29  SGTQACKALRADGFEVVLVNSNPASIMTDPDMADRTYVEPLTPEVVTRVIEQERPDALLP 88

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVALSENGTLERYGVELIGADLQAIQKAEDRLLFKQAMERIGVKVCPSGI 148

Query: 113 V---NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSLEEADAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEDYAAICKSGLDASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P+   V  +E+N  P ++  S            ++AA 
Sbjct: 269 AIAIIREIGVATGGSNIQFAINPVDGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|329965096|ref|ZP_08302065.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
 gi|328523924|gb|EGF51002.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
          Length = 380

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/300 (13%), Positives = 75/300 (25%), Gaps = 42/300 (14%)

Query: 19  GKACASALEDAGFKVSQ-------------------IDVDRS--------VGLVLAHLKP 51
             + A +L+   + V                     ID+  +        V  VL     
Sbjct: 12  ALSVARSLKKERYSVIALLHRGDISTKSKYIDKLYTIDITPTHKKEYLFFVHRVLQVHAI 71

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
            +   +         + +  LE                  +       +        P  
Sbjct: 72  SVIIPLSDVTAEFLSINKVELEHEYHLKCAIPNYDIFQKANDKWQLLALCKENFIPHPQT 131

Query: 112 L--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +    ++   I  P +IKP     + GI ++     +               L   
Sbjct: 132 QLLTSSNLQEAADAIGFPALIKPNISVGARGITMVCSLSDLQDKYDGILRKYGECTLQEY 191

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
               G      +M           V       Y +K  S +    + +K   +I K    
Sbjct: 192 IDTSGAPYYNVMMYRDEKGNIVNTVIIEIIRYYPIKGGSSSFCRTIESKELSEICK---- 247

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                 + +   G +  D +          +EIN +    P SI    A  +G +F  L+
Sbjct: 248 ---KTLEVLNWIGFADFD-ILQTKDGDFKIIEINPR---VPASI--RAAEVSGINFPALI 298


>gi|206560774|ref|YP_002231539.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia J2315]
 gi|198036816|emb|CAR52716.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia J2315]
          Length = 404

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 78/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYQDAPGHQVAHRAHVIDMTDPAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFEAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K D  +      +      +  ++++E +VD   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVEPAWDHAMAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +      + + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDYVESWQPQPMRAAALAKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGMFGVELFV--RGDDVWFSEVSPRP 294


>gi|295666554|ref|XP_002793827.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
 gi|226277480|gb|EEH33046.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb01]
          Length = 726

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 40/216 (18%), Positives = 78/216 (36%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        M
Sbjct: 122 YGFLSENSTFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTTAGVPCVPGYHGENQDM 181

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           D        I  P +IK +KGG   G+ +    ++    L+       +S+ +   L+ +
Sbjct: 182 DFLEAEAERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGNDTMLVEK 241

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 242 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPEATRKDLWDKARA 301

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 302 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 333


>gi|72393453|ref|XP_847527.1| 3-methylcrotonyl-CoA carboxylase [Trypanosoma brucei TREU927]
 gi|62175114|gb|AAX69263.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei]
 gi|70803557|gb|AAZ13461.1| 3-methylcrotonyl-CoA carboxylase, putative [Trypanosoma brucei
           brucei strain 927/4 GUTat10.1]
          Length = 678

 Score = 54.9 bits (130), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 24/152 (15%), Positives = 55/152 (36%), Gaps = 9/152 (5%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVD 173
                I  P +IK + GG   G+ ++ ++    L L        + +     +L    + 
Sbjct: 156 HEAKTIGFPVLIKAVSGGGGKGMKIVMEETEFHLMLESAKREAINFFKDDRVILERYVMH 215

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              + C +  D+  +                +             + +D+ + +  +A  
Sbjct: 216 PRHIECQIFFDSFGNGVFFFERDCSVQ----RRHQKVIEEAPAPGLSVDMRRRIGDVALT 271

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+G  G    +F+FD    + F++E+N +
Sbjct: 272 AARAVGYVGAGTVEFIFDTEKDEFFFMEMNTR 303


>gi|296127501|ref|YP_003634753.1| carbamoyl-phosphate synthase, large subunit [Brachyspira murdochii
           DSM 12563]
 gi|296019317|gb|ADG72554.1| carbamoyl-phosphate synthase, large subunit [Brachyspira murdochii
           DSM 12563]
          Length = 1063

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGL-VLAHLKPDLAFNV 57
           G     +L++ G++V  I+                    ++ +    ++   +PD     
Sbjct: 30  GTQACQSLKEEGYEVILINSNPATIMTDSAVADKVYIEPINLNFAKRIIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS-------SCGVPVCPS 110
           L G  G +  V  + E   +   +  IL + L+       + +        +  VP    
Sbjct: 90  LGGQTGLNL-VVELAESGILDEYNVEILGTDLNAINCAEDRELFKKLMNDINEPVPDSVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +   + I    V++P       G    + ++ +          +   + L+E+
Sbjct: 149 VHSVEEAVAFANKIGYHLVVRPAYTLGGTGGGFARNEKELIEICESGLKISPVHECLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +     + ++  
Sbjct: 209 SIAG-YKEIEYEVMRDNNDNAIVVCNMENVDPVGIHTGDSIVVAPCQTLSDRENQMLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G        DP S   + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIIRALKICGGCNVQLALDPKSFNYYIIEVN--PRVSRSS--ALASKATGYPIAKISA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/293 (12%), Positives = 89/293 (30%), Gaps = 34/293 (11%)

Query: 26  LEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFGE 64
           + +AG++   I+ +                       V  ++   KP        G    
Sbjct: 581 IREAGYEAIVINNNPETVSTDFSISDKLYFEPLTIEDVMHIVELEKPRGVIVQFGGQTAI 640

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +   + ++  + I  T    +  A    +            P   +       +     I
Sbjct: 641 NLAEKLVMHGVNILGTSLENINKAEDRHEFEEMLKALDIPQPKGKTAFTIDEAVIIAKDI 700

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELTCGVMG 183
             P +++P        + ++  D S+ + +  +         +LI++YV G E+    + 
Sbjct: 701 GYPVLVRPSYVLGGRAMEIVDNDVSLKIYMDTAVKEISNKAPILIDKYVIGKEIEIDAIA 760

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D+  +V    + +    +      S++        I   +   +        +     G+
Sbjct: 761 DSEHNVFIAGIMEHIERAGIHSGDSISVYPAQ--TISKKVKDTIIDYTKRIGEGFNFIGL 818

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYSFRE 287
               F+ D     V+ LE+N       P ++ ++      A      G S +E
Sbjct: 819 YNIQFIVDKNDN-VYVLEVNPRSSRTVPFLSKITNVQMANAATMCILGKSLKE 870


>gi|294795153|ref|ZP_06760287.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           3_1_44]
 gi|294453945|gb|EFG22320.1| carbamoyl-phosphate synthase, large subunit [Veillonella sp.
           3_1_44]
          Length = 1066

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   +P        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIINKEQPAGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +    ++   
Sbjct: 638 INLAGPLAERGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    ++  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|238019707|ref|ZP_04600133.1| hypothetical protein VEIDISOL_01582 [Veillonella dispar ATCC 17748]
 gi|237863748|gb|EEP65038.1| hypothetical protein VEIDISOL_01582 [Veillonella dispar ATCC 17748]
          Length = 1066

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/290 (13%), Positives = 93/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   KP        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIIEKEKPAGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +     +   
Sbjct: 638 INLAGPLAKRGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQAAAKN 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    +I  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQEIIDQIVDYTRRIAIGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|269797629|ref|YP_003311529.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           DSM 2008]
 gi|269094258|gb|ACZ24249.1| carbamoyl-phosphate synthase, large subunit [Veillonella parvula
           DSM 2008]
          Length = 1066

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G+KV  +         D D              V  V+   +P      
Sbjct: 28  GTQACRSLREEGYKVVLVNSNPATIMTDTDIADRVYVEPISLEFVTEVIKKERPWGLLAT 87

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPSI 111
           L G  G +  VQ      LE   +    + + A   + D+   +      +  VP     
Sbjct: 88  LGGQVGLNMAVQLSEAGVLEEYGVKLLGTTLEAIKQAEDRELFKEAMKEINQPVPESDIF 147

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +   + I  P +I+P       G  +   +  +     +    +   Q+L E+ 
Sbjct: 148 NDLEEAVAFANRIGYPIIIRPAYTLGGTGGGIAHNEDEMYEITRRGLKLSPIHQILAERS 207

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           V G                   +  +      +   + +S  V P++   DI  ++ +  
Sbjct: 208 VAG--WKEIEYEVMRDSADNCIIVCNMENIDPVGVHTGDSIVVAPSQTLNDIQYQMLRTA 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     +  +P S +   +E+N  P ++  S     +   GY   ++  
Sbjct: 266 SVEIIRYLKIEGGCNVQYALNPNSNEYIVIEVN--PRVSRSS--ALASKATGYPIAKVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/290 (12%), Positives = 94/290 (32%), Gaps = 32/290 (11%)

Query: 25  ALEDAGFKVSQI-----------DVDR----------SVGLVLAHLKPDLAFNVLHGNFG 63
           AL  AG++   I           D+             V  ++   +P        G   
Sbjct: 578 ALRKAGYQSIMINNNPETVSTDFDISDSLYFEPLTVDDVMEIINKEQPAGVIAQFGGQTA 637

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +         ++I  T    +  A   ++            PV   +  +    ++   
Sbjct: 638 INLAGPLAERGVKILGTSVDSIDMAEDRERFDELLAKLGIPRPVGALVTSDEEAQEAAKK 697

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + ++  D+ + + + ++   +    +LI++Y+ G+E+    + 
Sbjct: 698 LKYPLIVRPSYVLGGRAMEIVYNDKELDVYMKEAVVASKEHPVLIDRYMVGMEVEVDAIS 757

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           D +        P            S +S  V PA+    ++  ++          +  +G
Sbjct: 758 DGTDVCI----PGIMEQIERAGVHSGDSMAVYPAQHLSQELIDQIVDYTRRIAVGLNVKG 813

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +    ++      ++  +E+N +   T     P ++   G +  E    +
Sbjct: 814 VLNIQYIV--ADGELNVIEVNPRSSRT----VPFISKVTGINMVECATRI 857


>gi|82593728|ref|XP_725125.1| carbamoyl phosphate synthetase II [Plasmodium yoelii yoelii str.
           17XNL]
 gi|23480014|gb|EAA16690.1| carbamoyl phosphate synthetase II-related [Plasmodium yoelii
           yoelii]
          Length = 1277

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/296 (10%), Positives = 86/296 (29%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 625 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 684

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 685 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGS 744

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 745 AKNVEEAIEVANKIGYPILVRTTFSLGGLNSSFINNEEELIEK-CKEIFLQTDNEIFIDK 803

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IA+   +       ++  +        +    Y + + +
Sbjct: 804 SLKGW-KEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNSEYYKFREI 862

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 863 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 914


>gi|189346885|ref|YP_001943414.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
 gi|189341032|gb|ACD90435.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chlorobium
           limicola DSM 245]
          Length = 485

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/223 (16%), Positives = 76/223 (34%), Gaps = 17/223 (7%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+     +++   + +            DK+ SK++     VP  P I 
Sbjct: 79  NGVHPGWGFLSENAKFARMVQDSGLIWIGPSPEVIHKMGDKIESKKIAKEARVPTIPGIN 138

Query: 113 VNR-----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNH 162
                        +  +  P +IK   GG   G++ +  D  +   L Q       S+ +
Sbjct: 139 SPNTTEEIRRWMQEEDVVFPIIIKASSGGGGKGMVRVGNDTELETALAQARSEAKKSFGN 198

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            + L+ +    G  +   ++ D   +V  +   +        + +           +  +
Sbjct: 199 DEILVEKFIEKGKHIEVQIIADQHGNVLHLYDRECTLQ----RRNQKVIEEAPSPSLDEE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   A    + IG       +FL D  + K ++LE+N +
Sbjct: 255 TRNSICETAVRLMRTIGYSSAGTVEFLLDAATGKFYFLEVNTR 297


>gi|319405739|emb|CBI79362.1| Biotin carboxylase [Bartonella sp. AR 15-3]
          Length = 452

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 96/285 (33%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   I    D D                       ++  +++  +  
Sbjct: 14  ALRILRACKELGIKTVAIHSTADADAMHVRLADESVCIGPPQSRDSYLNIYQIISACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     +LE   I +         +  DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFADVLEAHNITFIGPTAAHIRIMGDKIEAKKTAKDLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
                I+  +  +   + I  P +IK   GG   G+ V+  +Q +   L       ++++
Sbjct: 133 GSNEAIVEEKEALRIANEIGYPVIIKASAGGGGRGMKVVHSEQKLLTALKTARSEANAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N     + +       +   V+GD + +   +            ++  +      P    
Sbjct: 193 NDDSVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSLQR---RHQKVWEEATSPVLNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K    +A    + +  RG    +FL+   + + +++E+N +
Sbjct: 250 TERKKIGNIVANACAK-LRYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|289674686|ref|ZP_06495576.1| Urea amidolyase-related protein [Pseudomonas syringae pv. syringae
           FF5]
          Length = 176

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-----GI 175
            H I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 8   AHTIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 67

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   V GD   +V  + V          K         LP  +  ++       A    
Sbjct: 68  HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPHGMAEELCI----AAVKLA 123

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+  R     +F+FD   ++ ++LE+N +
Sbjct: 124 RAVNYRSAGTVEFVFDSEDQRFYFLEVNTR 153


>gi|212638030|ref|YP_002314550.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anoxybacillus
           flavithermus WK1]
 gi|212559510|gb|ACJ32565.1| Biotin carboxylase [Anoxybacillus flavithermus WK1]
          Length = 470

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG  +G+ ++  ++ +      + S           YV+       
Sbjct: 165 ANGIGYPVMLKASAGGGGIGMQLVYDEEQLRKAFEGNQSRAASFFGDGAMYVEKYIDNPR 224

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+    +  +      A  A + IG
Sbjct: 225 HIEIQLLADAHGNCVYLWERECSIQRRHQKVVEEAPSPFLDEETRRKMGEAAVRAAKHIG 284

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 285 YTNAGTIEFLVDEQKN-FYFLEMNTR 309


>gi|167580309|ref|ZP_02373183.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis TXDOH]
          Length = 404

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDAFR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ D  +      +      +  ++++E +V    
Sbjct: 147 AAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASLETRTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|163746112|ref|ZP_02153471.1| pyruvate carboxylase [Oceanibulbus indolifex HEL-45]
 gi|161380857|gb|EDQ05267.1| pyruvate carboxylase [Oceanibulbus indolifex HEL-45]
          Length = 1146

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  I  ++ +   + +            E Y++ + L   
Sbjct: 151 AAEVGYPLMLKASWGGGGRGMRPIMSEKELAEKVREGRREAEAAFGNGEGYLEKMILRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +    L   +  +         ++  +       PA    +  +             + 
Sbjct: 211 HVEVQILGDKQGDIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRAEICELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    + +++E+N +
Sbjct: 271 YECAGTVEFLMDMDDGQFYFIEVNPR 296


>gi|261250465|ref|ZP_05943040.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio orientalis CIP
           102891]
 gi|260939034|gb|EEX95021.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio orientalis CIP
           102891]
          Length = 447

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADEAICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                   +         I  P +IK   GG   G+ V++ ++ +   +  +       +
Sbjct: 134 SDGPLDDDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEKELTEAIAMTRAEAKSCF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|167585892|ref|ZP_02378280.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ubonensis Bu]
          Length = 381

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 78/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGIEVIAVDRYPDAPGHQVAHRAHMIDMTDADALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDEFR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +        +    +  ++++E +VD   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRSEADVEPAWQYALAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +        + +A    +
Sbjct: 207 EITQLTVRAIDPASGDTRTYFCEPVGHVQVAGDYVESWQPQPMSAAALARSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDEVWFSEVSPRP 294


>gi|89895605|ref|YP_519092.1| hypothetical protein DSY2859 [Desulfitobacterium hafniense Y51]
 gi|89335053|dbj|BAE84648.1| hypothetical protein [Desulfitobacterium hafniense Y51]
          Length = 1065

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/301 (11%), Positives = 90/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++   +PD     
Sbjct: 36  GTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTVEFLERIIERERPDGIIAT 95

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111
           + G  G +   Q     IL+   +    + + +   + D+   + ++      VP    +
Sbjct: 96  MGGQTGLNLAFQLAEKGILQRCGVQLMGTSLDSITKAEDREHFRSLMKMLGEPVPPSVIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    + +          +  DQ+L+E+ 
Sbjct: 156 SDLEEALSFGEEIGYPVIVRPAYTLGGTGGGIAHNREQLREIAKSGLQASLIDQILVEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S           +     +                 ++   ++  +
Sbjct: 216 VAGWKEIEYEVLRDSQGNCITICNMENMDPVGVHTGDSMVVAPCQTLTDREVQA-LRTSS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G     +   P   +   +E+N  P ++  S     +   GY   ++   
Sbjct: 275 RKIVAALGIEGGCNVQYALHPERLEYVVIEVN--PRLSRSS--ALASKATGYPIAKVAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 89/297 (29%), Gaps = 31/297 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+ AG +   I         D D              V  VL   +P+    
Sbjct: 580 SVHSVL-ALKKAGVETIIINNNPETVSTDFDTADRLYFEPLTLEDVSAVLEREQPEGVIV 638

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G               +I  T    +  A    +            P          
Sbjct: 639 QFGGQTAIGLAKPLAERGYKILGTSIEDIDRAEERGQFDEVLHTIGAKRPKGGQASSLAE 698

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    I  P +I+P        + ++     +   + ++ +   G +L ++QY+ G E
Sbjct: 699 AVEVAARIGYPLMIRPSFVLGGRAMEIVYSASELENVVNRAMADFPGQELWMDQYLVGKE 758

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D         +   +       +S  +     P  +   + + +  L     +
Sbjct: 759 VEVDAISDGKNVSLPGIMEHLERAG---VHSGDSIAVYPPQTLSEPLIQRITLLTTEIAR 815

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+   G+    ++      +V+ +E+N +   T     P ++   G S  +    ++
Sbjct: 816 ALNVIGLLNIQYVIFQ--DEVYVIEVNPRSSRT----VPFISKVTGLSIVDYATEVI 866


>gi|254247595|ref|ZP_04940916.1| Formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia PC184]
 gi|124872371|gb|EAY64087.1| Formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia PC184]
          Length = 404

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDPAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIETAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFEAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K D  +      +      +  ++++E +VD   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDYVESWQPQPMSAAALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|330883773|gb|EGH17922.1| D-alanine--D-alanine ligase [Pseudomonas syringae pv. glycinea str.
           race 4]
          Length = 119

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 51/116 (43%), Positives = 66/116 (56%), Gaps = 2/116 (1%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
           DAG     IDV       L   K D AF VLHG  GEDG +Q +LE LEIPYT SG+LAS
Sbjct: 3   DAGVDAFGIDVGDDFLQRLVSEKIDRAFIVLHGRGGEDGTMQGLLECLEIPYTGSGVLAS 62

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
           AL+MDK+R+KQV  S G+      +       + +   +  P ++KP   GSS+G+
Sbjct: 63  ALAMDKLRTKQVWQSLGLATPLHAVLGNESDCICAATELGFPLIVKPAHEGSSIGM 118


>gi|156146812|gb|ABU53418.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTFPGEVVKDVAFYDYDAKYIDNKITMDIPAKISEDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|152975580|ref|YP_001375097.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           subsp. cytotoxis NVH 391-98]
 gi|152024332|gb|ABS22102.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           cytotoxicus NVH 391-98]
          Length = 445

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQILADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEKTRKKMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|262281599|ref|ZP_06059377.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Acinetobacter calcoaceticus RUH2202]
 gi|262256975|gb|EEY75715.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Acinetobacter calcoaceticus RUH2202]
          Length = 646

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 72/224 (32%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGYPLMVKASAGGGGRGMRLVEQSSQLVEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFCDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S + ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGEFYFLEMNTR 293


>gi|170035239|ref|XP_001845478.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial [Culex
           quinquefasciatus]
 gi|167877128|gb|EDS40511.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial [Culex
           quinquefasciatus]
          Length = 699

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + + +      L  + + +          ++    +  
Sbjct: 177 AKIIGFPLMIKAVRGGGGKGMRIAETEADFMAALQSARTESEKAFGDSSMLLERYVRSPR 236

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++  ++   A  A +A+ 
Sbjct: 237 HVEVQVFADHFGNAVYLYERDCSVQRRHQKIIEEAPAPGLSEELRVQLGEAAVRAAKAVN 296

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D       ++E+N       P +T +            +  +L+ W ++
Sbjct: 297 YVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEWQIK 344

Query: 295 DAS 297
            AS
Sbjct: 345 VAS 347


>gi|167749995|ref|ZP_02422122.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
 gi|167657016|gb|EDS01146.1| hypothetical protein EUBSIR_00963 [Eubacterium siraeum DSM 15702]
          Length = 325

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/179 (13%), Positives = 52/179 (29%), Gaps = 11/179 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V+KP++G  S G++     +       ++ +       ++ +   G      +    
Sbjct: 144 YPCVLKPIRGRGSQGVVKCDTPEEFIKARDEAFASGRYGDTMMAEEYLG-GTEVTLTVFP 202

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                                  +                 +++   LA   +G + + R
Sbjct: 203 DGTSLPFIERFDQKNGIAPYNGDVPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVR 262

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTP---------VSIFPEMAAYAGYSFRELLLWMVED 295
            D   D  +      + N +P +T           S+    A  AG  +  LL  M+E 
Sbjct: 263 IDCRAD-KNGNFKMFDFNPKPNLTGASRPHRPDLNSLTLMAAEAAGMDYFGLLTKMLET 320


>gi|167569328|ref|ZP_02362202.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           oklahomensis C6786]
          Length = 404

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERPHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALASIEAAGIAEVIPTARATQLTMNREGIRRLAAETLGLPTSPYAFAQSFDEFK 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K+D  +      +      +  ++++E +V    
Sbjct: 147 AAVARIGFPCVVKPVMSSSGKGQSVVKRDADVESAWQYAMAGGRVNHGRVIVEGFVQFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLSVRAIDPASLETRTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|86142716|ref|ZP_01061155.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Leeuwenhoekiella blandensis MED217]
 gi|85830748|gb|EAQ49206.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Leeuwenhoekiella blandensis MED217]
          Length = 950

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 82/267 (30%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRYGIKIIGTSYQALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            ++   P   +       +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSRLLKENNIPYPEFDTAETAEEALAVADKLDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KDELEETVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F       KV+ +E N +
Sbjct: 800 ---DSNATLPPFNLGDLVIQQIKDHTHKIALALNTVGLINIQFAI--KDDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              T     P +A   G  +      +
Sbjct: 855 ASRT----VPFIAKAYGEPYVNYATKI 877



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGSQALRSLREDGIETILINSNPATIMTDPVMADHVYLLPLTTKSLVKILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E   +      I A  ++ D+ + ++++   GV +    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFGVKIIGVDIDAINITEDREKFRELMLKIGVGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++ K +     L      +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLVIRASYTLGGAGASIVYKPEDFDRQLSHGLEISPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALMGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDSTYQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ASKL 328


>gi|168187331|ref|ZP_02621966.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
 gi|169294764|gb|EDS76897.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum C
           str. Eklund]
          Length = 447

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 89/277 (32%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLV--------LAHLKPDLAFN--------------- 56
              A  + G +   +  D+D+    V        +   KP  ++                
Sbjct: 17  IIRACREMGIETVVVYSDIDKDALHVQMADEAVCIGPAKPSESYLNMENIISATVLTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAEMCNECNIIFIGPDIETMNNMGNKSKAREIMMKANVPIVPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +  +     I  P ++K   GG   GI +++    +      +            
Sbjct: 137 NVERAKEALKEAERIGYPVMVKAAAGGGGRGIRIVRNSDELTKMFETAKREAEVAFGDGS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++  +       P   +  ++  ++ 
Sbjct: 197 MYMEKFVENPKHVEIQILGDNHGNVVHLGERDCSIQRRNQKVLEETPCPIMTKELRMKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +G    +FL D  + + +++E+N +
Sbjct: 257 DIAVKAAKAVNYKGAGTIEFLLD-KNGEFYFMEMNTR 292


>gi|153836703|ref|ZP_01989370.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Vibrio
           parahaemolyticus AQ3810]
 gi|149750052|gb|EDM60797.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Vibrio
           parahaemolyticus AQ3810]
          Length = 686

 Score = 54.9 bits (130), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPSTNAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVEHLLTEAEKIGYPVMLKATQGGGGKGMRVVNSAAELP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  V+   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLVEKCILQPRHVEIQVFADQHGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLGDELRKQMGEAAVHAAQAIDYVGAGTVEFLLDSR-GEFYFMEMNTR 292


>gi|109391478|gb|ABG33858.1| Yen9 [Yersinia sp. MH-1]
          Length = 1210

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 86/278 (30%), Gaps = 33/278 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D+ +         +  F   +G   E        E   I +        A    K R
Sbjct: 61  LDIDK-ILAAARQSGAEAIFPG-YGFLSERAEFAQACEDAGIVFIGPTAEHIASFGLKHR 118

Query: 96  SKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           ++ + ++  +P+ P    +   R    +   I  P ++K   GG  +G++    +  +  
Sbjct: 119 ARALAAAVAMPMTPGTSLLATLREAQRAAEDIGYPVMLKTTAGGGGIGLMRCDNEGVLVE 178

Query: 153 DL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
                  +    ++     +         L   + GD    V  +            K  
Sbjct: 179 AWDSVKRMGQQFFSDDGVFIERFIDRARHLEVQIFGDGKGRVVALGERDCSLQRRNQKVV 238

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                  LP      +Y      A    +++  R +   +F++D  S   ++LE+N +  
Sbjct: 239 EETPAPNLPQATREALYA----SAIALGESVNYRSVGTVEFIYDAASDAFYFLEVNTR-- 292

Query: 268 MTPVSIFPEMAAY------AGYSFRELLLWMVEDASCL 299
                       +       G    +L+  M++ A+  
Sbjct: 293 --------LQVEHPVTESVTGL---DLIECMLKIAAGD 319


>gi|159903483|ref|YP_001550827.1| carbamoyl phosphate synthase large subunit [Prochlorococcus marinus
           str. MIT 9211]
 gi|159888659|gb|ABX08873.1| carbamoyl-phosphate synthase, large subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 1102

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/314 (14%), Positives = 101/314 (32%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     +  V+   +P     
Sbjct: 29  SGTQACKALKEEGYEVVLVNSNPASIMTDPEIAYRTYIEPITSDVIEKVIEVERPQALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  V+     IL+   +    + + +   + D+   K  + + GV VCPS  
Sbjct: 89  TMGGQTALNISVELAEKGILKKFGVELIGADLASIKRAEDRQLFKDSMKNIGVNVCPSGI 148

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         + + P +I+P       G  +    +       Q    +   Q+LIE
Sbjct: 149 ASNIEESLSVGNTISTFPRIIRPAFTLGGSGGGIAYNKEEFISICKQGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +          +  +    
Sbjct: 209 KSLLGWKEFELEVMRDISDNVVIVCSIENLDPMGIHTGDSITVAPAQTLTDREYQRLRDY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P+  +V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIKIIREIGVETGGSNIQFAVNPIDGEVIVIEMN--PRVSRSSALASKATGFPIAKIAAL 326

Query: 280 -YAGYSFRELLLWM 292
              GY   E++  +
Sbjct: 327 LAVGYRLDEIVNDI 340


>gi|326436853|gb|EGD82423.1| carbamoylphosphate synthase [Salpingoeca sp. ATCC 50818]
          Length = 2172

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  VL + +PD    
Sbjct: 418 SGSQAIKALKEENIQTVLINANIATVQTMKGLADKVYFLPVTPEYVEKVLEYERPDGVLL 477

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G       I +   +    + + A   + D+    + ++      CP+I 
Sbjct: 478 AFGGQTALNCGVKLWEAGIFDKYNVKVYGTPVQAIVDTEDREIFSRKLAEISEMCCPNIA 537

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   I  P +++       LG  VI     +      +    +  Q+++E+
Sbjct: 538 CTTVEQVLQAAEKIGFPVMMRSSFALGGLGSGVIYAMDELKEKARVAL--ANSTQVMLER 595

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++G             +   I V   + +     ++  +        +  D Y  ++ +
Sbjct: 596 SLEGW-KEIEYEVVRDCEDNTITVCNMENFDPLGIHTGESIVIAPSQTLNNDEYNMLRSV 654

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + IG  G     +  +P SR+ + +E+N +  ++  S     +   GY    +  
Sbjct: 655 ACKVVRHIGIVGECNIQYALNPHSREYYIVEVNAR--LSRSS--ALASKATGYPLAYVAA 710

Query: 291 WM 292
            +
Sbjct: 711 KL 712


>gi|86133850|ref|ZP_01052432.1| pyruvate carboxylase [Polaribacter sp. MED152]
 gi|85820713|gb|EAQ41860.1| pyruvate carboxylase [Polaribacter sp. MED152]
          Length = 1150

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 77/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D ++  V      D      +G   E+       E  +I +    +       DK+ 
Sbjct: 63  LDID-AIIKVAKDNGVDAIHPG-YGFLSENANFAQKCEENDIIFVGPKVSVLKSLGDKIT 120

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V     +P+  S      +++        I  P ++K   GG   G+ VI+K   + 
Sbjct: 121 AKKVAIDNNIPIIKSNKNPLESIEIALEEAEKIGYPIMLKAASGGGGRGMRVIRKADELK 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               +S             +++        +    +  +             ++      
Sbjct: 181 KAYGESKREALNAFGDDTVFLEKFVENPKHIEIQIVADSFGNTVHLFERDCSVQRRYQKV 240

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +    + + A    +A+    I   +FL D     ++++E+N +
Sbjct: 241 IEFAPSYGLKQETKDALYKYAIDICKAVNYNNIGTVEFLVD-DDDSIYFIEVNPR 294


>gi|84685291|ref|ZP_01013189.1| carbamoyl-phosphate synthase large subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84666448|gb|EAQ12920.1| carbamoyl-phosphate synthase large subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 1089

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 96/315 (30%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++A  KPD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIAKEKPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALADMGVLEEHGVELIGAKREAIEMAEDRKLFREAMDRLGIENPRATI 148

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                    ++   I  P +I+P       G  +    +         
Sbjct: 149 VTAPKKADGKADLEKGVQIALETLEEIGLPAIIRPAFTLGGTGGGIAYNREEYIYYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P + ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPENGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 63/190 (33%), Gaps = 25/190 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              I  P VI+P        + +++    +   +  +   +    +L++ Y+ G +E+  
Sbjct: 724 AESIGFPLVIRPSYVLGGRAMEIVRDMDGLKRYIRDAVVVSGDSPVLLDSYLSGAVEIDV 783

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +  +I   ++  +      +G
Sbjct: 784 DALCDGKTVHVAGIMQHIEEAG---VHSGDSACSLPPYSLSDEIIDGLKAQSEALALELG 840

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG---------------YS 284
             G+    F       +++ +E+N +   T     P +A                     
Sbjct: 841 VVGLMNVQFAV--KDGEIYLIEVNPRASRT----VPFVAKAVNSPIASIAARVMAGETLD 894

Query: 285 FRELLLWMVE 294
             +L+  +++
Sbjct: 895 KFDLIDPLID 904


>gi|150005616|ref|YP_001300360.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294778574|ref|ZP_06743996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
 gi|149934040|gb|ABR40738.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|294447523|gb|EFG16101.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
          Length = 503

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 78/248 (31%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVD---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I              V       K D      +G   E+       +   I +   
Sbjct: 47  EAYLIGPAIARESYLNIEKVIETAKRCKADAIHPG-YGFLSENADFARRCKEEGIIFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSS 138
                    DK+ +++ + + GVPV P       + +    I      P ++K   GG  
Sbjct: 106 SAETMEAMGDKIAARKRMIAAGVPVVPGTEQPLQSAEEAVRICNEIGYPVMLKASMGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +I  +  +      + S +         Y++        +    L      V    
Sbjct: 166 KGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNHGNVIHLF 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P+     ++ +E+   A  A +A+   G    +FL D  +R  
Sbjct: 226 DRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVNYSGAGTIEFLVD-KNRDF 284

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 285 YFLEMNTR 292


>gi|308173823|ref|YP_003920528.1| biotin carboxylase subunit [Bacillus amyloliquefaciens DSM 7]
 gi|307606687|emb|CBI43058.1| biotin carboxylase subunit [Bacillus amyloliquefaciens DSM 7]
 gi|328553250|gb|AEB23742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           amyloliquefaciens TA208]
 gi|328911965|gb|AEB63561.1| biotin carboxylase subunit [Bacillus amyloliquefaciens LL3]
          Length = 449

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ ++  ++ +      +             Y++ +     
Sbjct: 148 ARAIGFPVMLKASAGGGGIGMQIVHSEEELAKAFEGNQKRAASFFGDGAMYMEKVIENAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P   +  ++ + +   A  A ++IG
Sbjct: 208 HIEIQILADSFGNTVHLFERDCSVQRRHQKVIEEAPSPFVDEELRQRLGETAVKAAKSIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +     +FL D    ++++LE+N +
Sbjct: 268 YQNAGTIEFLVDQKK-QIYFLEMNTR 292


>gi|301106316|ref|XP_002902241.1| CAD protein [Phytophthora infestans T30-4]
 gi|262098861|gb|EEY56913.1| CAD protein [Phytophthora infestans T30-4]
          Length = 1495

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 91/306 (29%), Gaps = 36/306 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G  V  ++ +                      +V  ++   KPD    
Sbjct: 429 SGSQAIKALREEGVHVVLVNPNIATVQTSKGLADKVYFVPVRAETVLEIIKKEKPDGILV 488

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G       ++  L        + +  T    +      +K  +K       + +   
Sbjct: 489 SMGGQTALSVGIELYLNGDLERHNVRVMGTQIESIIDTEDREKFSAKLAEIDETIALSQP 548

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKG----GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  + + + I  P +++        GS   +   +        L  S+S     Q+
Sbjct: 549 ATTVEGALKAANEIGYPVLVRAAFALGGLGSGFAVNDEELRVLATKALHGSASKGQIKQI 608

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LI+Q + G                 I V   + +     ++  +        +    Y +
Sbjct: 609 LIDQDLRGW-KEVEYEVVRDAKDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSNSEYFK 667

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A    + +G  G     +  DP S +   +E+N +  ++  S     +   GY   
Sbjct: 668 LRSTAQKVVRHLGIVGECNIQYALDPKSERYCIIEVNAR--LSRSS--ALASKATGYPLA 723

Query: 287 ELLLWM 292
            +   +
Sbjct: 724 YVATKI 729


>gi|78486133|ref|YP_392058.1| allophanate hydrolase subunit 2 [Thiomicrospira crunogena XCL-2]
 gi|78364419|gb|ABB42384.1| urea amidolyase [Thiomicrospira crunogena XCL-2]
          Length = 1206

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/184 (12%), Positives = 59/184 (32%), Gaps = 16/184 (8%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P ++K   GG  +G+       ++     Q +  +         +++   +
Sbjct: 144 QQEADRIGFPVMLKSTAGGGGIGMQRCDTPDNLSEAFEQVARLSQNSFGQSGIFLEKFVV 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
               +           V         L+  +       PA  I  +   E++  A    +
Sbjct: 204 NARHIEIQIFGDGLGKVVSFGERDCSLQRRNQKVVEETPAVGISREQVAEMEAHAVRLGE 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWM 292
            +  +     ++++D  + + ++LE+N             +    G +      +L+ WM
Sbjct: 264 LVNYQSAGTVEYVYDADTNQYYFLEVNT-----------RLQVEHGITEAVRDVDLVQWM 312

Query: 293 VEDA 296
           ++ A
Sbjct: 313 IQVA 316


>gi|255655891|ref|ZP_05401300.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-23m63]
 gi|296450687|ref|ZP_06892440.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP08]
 gi|296879196|ref|ZP_06903191.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP07]
 gi|296260531|gb|EFH07373.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP08]
 gi|296429739|gb|EFH15591.1| acetyl-CoA carboxylase subunit A [Clostridium difficile NAP07]
          Length = 453

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 94/269 (34%), Gaps = 30/269 (11%)

Query: 21  ACASALEDAGF------KVSQIDVD---------RSVGLVLAHLKPDLAFNVLHGNFGED 65
           A  S ++   F      +   I  +          ++  +   LK D       G   E+
Sbjct: 30  AIYSEIDKDCFHRYIADESICIGPNNISKSYNNIENIIYLALKLKCDAIHPGF-GFLSEN 88

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQ 121
                  E   I +         L  DK R+++ +    +PV P     +      ++  
Sbjct: 89  PEFAKQCEENNIIFIGPTREQMILMGDKSRARETMMELNIPVVPGSESVLKTKEEALEVA 148

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIE 176
             I  P +IK   GG   G+ +++K++ +  +   +SS     +++ D  + +   +   
Sbjct: 149 REIGYPVMIKASSGGGGKGMRIVRKEEELFSNFDMASSEALAAFSNSDLYMEKFIENPRH 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V GD   +   +            + +       L   +  +  +++ ++A    +
Sbjct: 209 IEVQVFGDKHSNAIHLGDRDCSMQ----RRNQKVIEESLSPYLSDEERQKLHKIAVDIVK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G  G    +F+ D      +++E+N +
Sbjct: 265 GVGYIGAGTIEFIVDKDKN-FYFIEMNTR 292


>gi|210623122|ref|ZP_03293588.1| hypothetical protein CLOHIR_01538 [Clostridium hiranonis DSM 13275]
 gi|210153799|gb|EEA84805.1| hypothetical protein CLOHIR_01538 [Clostridium hiranonis DSM 13275]
          Length = 1147

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/243 (16%), Positives = 79/243 (32%), Gaps = 18/243 (7%)

Query: 35  QID--VDRSVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            ID  +D    + LA   K D      +G   E+       E   I +         L  
Sbjct: 60  PIDAYLDMDGIIALAKRKKVDAIHPG-YGFLAENAEFARKCEENGITFIGPSSEIMDLMG 118

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P +     +          I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAHEVNVQTIPGVEKAIKSTAEAKEVAAQIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S     +      + +   D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIEDPKHIEVQILGDQYGNLVHLYERDCSVQRR 238

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K         L  K   +I       A    + +G       +FL D      +++E+
Sbjct: 239 HQKIIEYAPAFSLSEKTRQEICA----DAVKLAKHVGYSSAGTLEFLVDKHGNH-YFIEM 293

Query: 263 NVQ 265
           N +
Sbjct: 294 NTR 296


>gi|149914457|ref|ZP_01902988.1| pyruvate carboxylase [Roseobacter sp. AzwK-3b]
 gi|149811976|gb|EDM71809.1| pyruvate carboxylase [Roseobacter sp. AzwK-3b]
          Length = 1146

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 47/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I     +   +L+            E Y++
Sbjct: 144 MDAIRREAAEIGYPLMLKASWGGGGRGMRPINGPDELAEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            + L    +    L      +         ++  +       PA    D+ +       +
Sbjct: 204 KMILRARHVEVQILGDKHGQMYHLFERDCSVQRRNQKVVERAPAPYLTDLQRAEICELGY 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + +        +FL D  + + +++E+N +
Sbjct: 264 KICKHVNYECAGTVEFLMDMDTSQFYFIEVNPR 296


>gi|32490772|ref|NP_871026.1| hypothetical protein WGLp023 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165978|dbj|BAC24169.1| carB [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 1084

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 87/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLK------------PDLAFN 56
           SG     AL++ G+K+  I         D D +    +  +             P     
Sbjct: 29  SGTQACKALKEEGYKIILINSNPSTIMTDPDIADSTYIEPINIKIIEKIIKKEKPSAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G              IL+   +        +   + ++    + +++ G+    S  
Sbjct: 89  TLGGQIALNCALKLDELGILKKFNVEMIGVNSESIKKAENRYLFVKSMNNIGLKTAKSGV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIE 169
           +      +     I  P +I+           ++   + +     +     +   +  I+
Sbjct: 149 VESTEEAIKLTSKIGFPCIIRSSFEMGGSNSGILYNKKDLIYFFSKIKKNYYEKIKFSID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           +++ G +     +     D   I     +     +      S   +      +       
Sbjct: 209 EFLLGWKEYELEIIRDKKDNCIIVCSIENIDPIGVHTGDSISVSPIQTLSDKEYQIMRNA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G +   F   P SRK+  +E+N  P ++  S     +   G+   E+ 
Sbjct: 269 AISIMKEIGVNSGGANVQFAIHPKSRKMIIIEMN--PRVSRSS--ALASKATGFPIAEIS 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 86/269 (31%), Gaps = 14/269 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   I     V  ++    P        G        +     + I  T    + 
Sbjct: 615 DRLYFEPITI---EDVLEIVRIENPIGVILQFGGQTPLKLSNELNSFKIPIIGTQYKYIN 671

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A + +K +          P           +    +I  P +I+P        + +I  
Sbjct: 672 LAENREKFKKIINNIGLNQPKSFVSKNINSVIKQAEMIGYPIIIRPSYILGGRYMKIIYN 731

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + + L      + +    +L++++  + IE+    + D    +    +   +       
Sbjct: 732 KKDLMLYFKNKKNISINFPILLDEFLTNAIEVDVDAIFDGKNLLICGIIEHIELAGIHSG 791

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +++   P  +  +I   ++        A   +G     F     +R ++ +E+N +
Sbjct: 792 ---DSTSVFPPFSLSKEIQSSIKEQTKKISHAFKIKGFLNIQFAI--KNRMIYLIEVNPR 846

Query: 266 PGMTPVSIFPEMAAYAGYSFREL-LLWMV 293
                 S  P ++   G SF ++ +L M+
Sbjct: 847 ---ASRS-IPFISKATGISFTKIAILSMI 871


>gi|319760428|ref|YP_004124366.1| biotin carboxylase [Candidatus Blochmannia vafer str. BVAF]
 gi|318039142|gb|ADV33692.1| biotin carboxylase [Candidatus Blochmannia vafer str. BVAF]
          Length = 453

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 87/288 (30%), Gaps = 47/288 (16%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFNV---------- 57
                 + ++ G K   +   +DR +  VL   +          D   N+          
Sbjct: 14  ALRILRSCKELGIKTVAVHSTIDRDLKHVLLSDETVCIGLPSIVDSYLNIPAIISAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ +  ++   G+   P 
Sbjct: 74  GATGIHPGYGFLSENADFAEQVERSGFIFIGPNSETMRLMSNKISAISIMKKVGIKSVPG 133

Query: 111 --------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QS 157
                   I    +   +   I+ P +IK   G   LG+ V++K   +   +        
Sbjct: 134 QDLKINEKINNIPYMNSNHININYPVIIKSAYGAGGLGMCVVRKKNDLQNAIKLAKSESK 193

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +N+    +     +   +   ++ D   +   +            +           +
Sbjct: 194 KIFNNDSIYIERYLENPRHIEVQILSDGKGNAIYLTERDCSIQ----RRHQKVIEETPAS 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            I  ++   +          IG RG+   +FL+   +   +++E+N +
Sbjct: 250 GITPEMRMFLGERCVQVCCEIGYRGVGTFEFLY--ENDDFYFIEMNTR 295


>gi|310658243|ref|YP_003935964.1| d-alanyl-d-alanine ligase a (fragment) [Clostridium sticklandii DSM
           519]
 gi|308825021|emb|CBH21059.1| D-alanyl-D-alanine ligase A (fragment) [Clostridium sticklandii]
          Length = 45

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 10/32 (31%), Positives = 20/32 (62%)

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            PG T +S++P++   +G S+  LL  +++ A
Sbjct: 1   MPGFTSISMYPKLWENSGVSYENLLEELIDLA 32


>gi|332796788|ref|YP_004458288.1| carbamoyl-phosphate synthase, large subunit [Acidianus hospitalis
           W1]
 gi|332694523|gb|AEE93990.1| carbamoyl-phosphate synthase, large subunit [Acidianus hospitalis
           W1]
          Length = 1045

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 98/296 (33%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++             D+         +V  V+   +PD    
Sbjct: 26  SGSQALKALKEEGIQTILVNSNVATVQTSYKMADKIYMLPVTWWAVEKVIEQERPDGIMI 85

Query: 57  ------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                  L+               +++  T    +  ALS +K R   +  +  VP   S
Sbjct: 86  GFGGQTALNVGVDLYKRGILQKYGVKVLGTPIEGIEKALSREKFRETMINVNLPVPPSLS 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +++        G  V   ++++  D+ ++ S ++  ++LIE+
Sbjct: 146 AKTEEEAIQKAREIGYPVMVRVSFNLGGRGSTVAWNEETLKRDIGRAFSQSYTHEVLIEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+   +     +   S   + +     +     +                 + Y++++  
Sbjct: 206 YLYHWKELEYEVMRDSKGNSAVIACIENLDPMGVHTGESTVIAPCQTLDNQE-YQDMRTK 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A L  ++I   G     F  DP S   + +E N  P M+  S     +   GY   
Sbjct: 265 AELVAKSIDLVGECNVQFALDPNSYTHYIIETN--PRMSRSS--ALASKATGYPLA 316


>gi|301106318|ref|XP_002902242.1| carbamoyl-phosphate synthase [ammonia], putative [Phytophthora
           infestans T30-4]
 gi|262098862|gb|EEY56914.1| carbamoyl-phosphate synthase [ammonia], putative [Phytophthora
           infestans T30-4]
          Length = 1551

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/306 (13%), Positives = 90/306 (29%), Gaps = 36/306 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G  V  ++ +                      +V  ++   KPD    
Sbjct: 485 SGSQAIKALREEGVHVVLVNPNIATVQTSKGLADKVYFVPVRAETVLEIIKKEKPDGILV 544

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G       ++  L        + +  T    +      +K  +K       + +   
Sbjct: 545 SMGGQTALSVGIELYLNGDLERHNVRVMGTQIESIIDTEDREKFSAKLAEIDETIALSQP 604

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKG----GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  + + + I  P +++        GS       +        L  S+S     Q+
Sbjct: 605 ATTVEGALKAANEIGYPVLVRAAFALGGLGSGFAANDEELRVLATKALHGSASKGQIKQI 664

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LI+Q + G                 I V   + +     ++  +        +    Y +
Sbjct: 665 LIDQDLRGW-KEVEYEVVRDAKDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSNSEYFK 723

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A    + +G  G     +  DP S +   +E+N +  ++  S     +   GY   
Sbjct: 724 LRSTAQKVVRHLGIVGECNIQYALDPKSERYCIIEVNAR--LSRSS--ALASKATGYPLA 779

Query: 287 ELLLWM 292
            +   +
Sbjct: 780 YVATKI 785


>gi|161485671|ref|NP_633852.2| pyruvate carboxylase subunit A [Methanosarcina mazei Go1]
          Length = 493

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGF--------------------KVSQIDVDRSVGLVLA-HLKPDLAFN- 56
                 A  + G                     +   I    S    L      ++A N 
Sbjct: 14  AIRVMRACRELGISTVAVCSEADKSALFAKYADEAYLIGPAPSSQSYLNMEAIIEVAKNT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+       E   I +        A    K+R++ ++   GVPV P 
Sbjct: 74  GAEAIHPGYGFLSENPAFAKRCEEEGIIFIGPPSNVIAEMGSKIRARHLMMKAGVPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      M+    I  P +IK   GG  +G+ V+   + +   L  +         
Sbjct: 134 TKDAVEDPEEAMEIAEKIGYPVLIKASAGGGGIGMKVVHSREELATSLSSTRQMAGSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L  +   +         ++          P   +  ++ K
Sbjct: 194 DSSVFIEKYVEEPRHIEIQILADSHGNMVYLSDRECSIQRRHQKLIEEAPSPIMTPELRK 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A    +AIG       +FL+       ++LE+N +
Sbjct: 254 QMGEAAVKVAKAIGYVNAGTVEFLY--SKGNFYFLEVNTR 291


>gi|326517844|dbj|BAK03840.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 550

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 26/190 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IKP  GG   G+ +++        +  +       +     L+ +      
Sbjct: 189 ADKIGYPVLIKPTHGGGGKGMRIVQGPDDFVDSVRSAQREAAASFGIDTLLIEKYITQPR 248

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +            +             +  +    +   A  A 
Sbjct: 249 HIEVQVFGDKHGNAIHLYERDCSLQ----RRHQKIIEEAPAPNVTTEFRTHIGEAAVSAA 304

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+G       +F+ D LS + +++E+N       P         EM    G   ++L+ 
Sbjct: 305 KAVGYYSAGTVEFIVDTLSGEFYFMEMNTRLQVEHP-------VTEM--VVG---QDLVE 352

Query: 291 WMVEDASCLR 300
           W +  A+  R
Sbjct: 353 WQIRVANGER 362


>gi|323144849|ref|ZP_08079418.1| phosphoribosylglycinamide formyltransferase 2 [Succinatimonas
           hippei YIT 12066]
 gi|322415374|gb|EFY06139.1| phosphoribosylglycinamide formyltransferase 2 [Succinatimonas
           hippei YIT 12066]
          Length = 399

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/291 (14%), Positives = 77/291 (26%), Gaps = 39/291 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRS 41
           A+L+G  S E    L  GK  A  L   G KV   D                        
Sbjct: 18  ALLLG--SGE----L--GKEVAIELIRLGIKVIACDRYDNAPAMQVAQDKAVINMKDHDE 69

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++  +KPD     +        +     E L +         +              
Sbjct: 70  LSALIHKVKPDFVIPEIEAISTSTLMELEEKEGLHVVPCAHAAHITMNREAIRTLAAEKL 129

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P ++KP    S  G   +K  + +      +    
Sbjct: 130 GLPTSKYFFASSLAEIKANIDKIGFPCIMKPTMSSSGKGQSTVKAPEDVEKAWDYALKAG 189

Query: 162 HGDQLLIEQYVDGIE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G +  +             ++   ++D      P                    P  + 
Sbjct: 190 RGGEQRVIVESMVKFDREITLLTVHAVDGIHFCQPIGHRQENG-----DYRESWQPEPLT 244

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             +  E +R+A    +A+G  GI   +        KV + E++ +P   GM
Sbjct: 245 DTVLDECKRIASTVVKALGGYGIFGVELFIC--GDKVIFSELSPRPHDTGM 293


>gi|320591326|gb|EFX03765.1| d-alanine ligase [Grosmannia clavigera kw1407]
          Length = 367

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/196 (22%), Positives = 73/196 (37%), Gaps = 21/196 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I+   V KP +G  S G+ V      +   + +  S      +LIEQ++ G E+T  VM 
Sbjct: 166 IAYSVVGKPARGRGSYGVKVCHTADELQDHVRELQSETM--HVLIEQFLAGEEVTVTVMP 223

Query: 184 --------DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                     +L V      +          +   ++  +       +Y+ + R      
Sbjct: 224 PAVAGKTDYWALPVVTRFDHEDGIAPSNGSVAVSTNSRAVSDSDKDPLYRALMRECEAVA 283

Query: 236 QAIGCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVS---------IFPEMAAYAGYS 284
           +A+G     R D     D  S K   L++N +P MT            +    A   G+ 
Sbjct: 284 RALGTTAPIRVDARRHRDAASSKFALLDVNTKPNMTGPGRPGRDDQACLTLLAAEALGWE 343

Query: 285 FRELLLWMVEDASCLR 300
           +RELL  ++  AS LR
Sbjct: 344 YRELLERILRTASVLR 359


>gi|307261588|ref|ZP_07543256.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
 gi|306868711|gb|EFN00520.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 12 str. 1096]
          Length = 393

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGEALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAISEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSELALKRAQETAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|227505376|ref|ZP_03935425.1| pyruvate carboxylase [Corynebacterium striatum ATCC 6940]
 gi|227198078|gb|EEI78126.1| pyruvate carboxylase [Corynebacterium striatum ATCC 6940]
          Length = 1143

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 70/234 (29%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E   +    +   I +         L+ DK  
Sbjct: 69  LDIDEVIRAA-KKSGADAIYPG-YGFLSERADLARACQDNGIKFIGPTPETLDLTGDKAA 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P       +             + P  +K + GG   G+  I+ +  +  
Sbjct: 127 AVTAAQEAGLPTLQDSEPSTDPDVLAGYAKDFTFPVFVKAVAGGGGRGMRFIENEAELKT 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 187 KCAEASREAEAAFGDGHVYLETAVIKPQHIEVQILADSQGNVVHLFERDCSVQRRHQKVV 246

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA      +   +   A    Q I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAPTLDPQLRDRICADAVKFCQNINYEGAGTVEFLVDEKGNHV-FIEMNPR 299


>gi|149194561|ref|ZP_01871657.1| Biotin carboxylase-like protein [Caminibacter mediatlanticus TB-2]
 gi|149135305|gb|EDM23785.1| Biotin carboxylase-like protein [Caminibacter mediatlanticus TB-2]
          Length = 476

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 75/235 (31%), Gaps = 15/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   E+G      E   I +         L  DKM SK  
Sbjct: 64  ERIIDIAKKAGVDAIHPG-YGFLSENGDFARACERAGIKFIGPRADDIDLYGDKMASKTA 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   G+PV       I+  +        I  P +IK   GG   G+ +++ ++       
Sbjct: 123 MKKVGMPVLEGTEEPIIDIKEAEKIAKQIGFPVIIKAAFGGGGRGMRIVRSEEEFKELFE 182

Query: 156 -----QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                    +  G+  + +   +   +   ++ D   +V  + +          +     
Sbjct: 183 AATSESMKFFGRGEVFIEKYVENPRHIEVQILADTHGNVIHLGIRDCSIQ----RRHQKV 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +  D   ++  ++  A + +G       +FL D      +++E+N +
Sbjct: 239 IEIAESPSLSKDTRDKICEVSVNALKKLGYVSAGTVEFLVDENEN-FYFIEMNTR 292


>gi|154334831|ref|XP_001563662.1| carbamoyl-phosphate synthase [Leishmania braziliensis
            MHOM/BR/75/M2904]
 gi|134060684|emb|CAM37699.1| putative carbamoyl-phosphate synthase [Leishmania braziliensis
            MHOM/BR/75/M2904]
          Length = 1867

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 950  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 1006

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++  +      + I  T    +  A    K  
Sbjct: 1007 EVSEETVLDILTKERVRGVVISLGGQIVQNMALSLKQSGVPILGTDPANIDMAEDRSKFS 1066

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S       ++    +  P +++P    S   + VI   + +   L 
Sbjct: 1067 KMCDDLGVPQPEWISATSVAQVLEFCDTVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1126

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +G           +     +     +       +S   +  + 
Sbjct: 1127 EASFVSGDHPVVVSKYYEGAMEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 1184

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL      ++  +E NV+   +  S  P
Sbjct: 1185 PQNTDKDTMKRIYDSVNCIAEKLDVVGPMNVQFLLTME-GQLRVIEANVR---SSRS-VP 1239

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1240 FVSKTLGISFPAVM 1253



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/297 (12%), Positives = 94/297 (31%), Gaps = 36/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 419 SGSQCLKSLREEGIETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 477

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 478 LGWGGQTALNCGVKLDELGILKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 537

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  +++  + +   +  +       Q+L+E
Sbjct: 538 AVTSVEEAVVASKEIGFPMMVRAAYCLGGQGSGIVENIEELRHKVEVAL--AASPQVLLE 595

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 596 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGIHTGESIVVAPSQTLSNDEFHMLRS 654

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY   
Sbjct: 655 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLA 707


>gi|332027711|gb|EGI67779.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Acromyrmex echinatior]
          Length = 691

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/287 (16%), Positives = 91/287 (31%), Gaps = 30/287 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN-----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +S    L   K            +H   G   E+     + +   I +    
Sbjct: 64  EAYCIGPAQSSQSYLRKDKIISVVKQAKCQAVHPGYGFLSENTEFAQLCQKENIIFIGPP 123

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK +++  GVP+      +  T ++       I  P +IK ++GG   
Sbjct: 124 ATAIRDMGIKNTSKAIMTKAGVPIIEGYHGDDQTNETLLVEARKIGFPLMIKAVRGGGGK 183

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ + +K+      L  + + +          ++        +                 
Sbjct: 184 GMRIAQKESDFVEALESARTESEKAFGDSAVLLEKYVTEPRHVEVQIFADKHGNAVFLFE 243

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          PA  I   + +E+   A  A +A+G  G    +F+ D  +    
Sbjct: 244 RDCSVQRRHQKVIEEAPAPGISQQLRQELGEAAVRAAKAVGYVGAGTVEFIMDRNNHSFH 303

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ++E+N       P +T         A  G    +L+ W +  AS  +
Sbjct: 304 FMEMNTRLQVEHP-ITE--------AITGL---DLVEWQLRVASGEK 338


>gi|170704628|ref|ZP_02895094.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0389]
 gi|170130429|gb|EDS99290.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0389]
          Length = 445

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQALTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEIAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDEQKN-FYFLEMNTR 292


>gi|332880327|ref|ZP_08448005.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332681772|gb|EGJ54691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 503

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/235 (17%), Positives = 82/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++DR +  V    K D      +G   E+       + + I +            DK+ 
Sbjct: 61  LNIDR-IIDVAVKCKADAVHPG-YGFLSENAEFVRRCDAVGIIFIGPTADTMEAMGDKIA 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++Q + + GVPV P         D    I      P ++K   GG   G+ +I  +  + 
Sbjct: 119 ARQRMMAAGVPVVPGTAEPLKDADEALRICKEIGFPVMLKASMGGGGKGMRLIHSEDEVK 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L      V         ++  +   
Sbjct: 179 EAYDSARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDAYGNVVHLFDRECSVQRRNQKI 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     ++ +E+   A  A +A+  RG    +FL D   R  ++LE+N +
Sbjct: 239 VEESPSPFLTPELRREMGEKAVAAARAVNYRGAGTIEFLVDKY-RHFYFLEMNTR 292


>gi|307353661|ref|YP_003894712.1| carbamoyl-phosphate synthase large subunit [Methanoplanus
           petrolearius DSM 11571]
 gi|307156894|gb|ADN36274.1| carbamoyl-phosphate synthase, large subunit [Methanoplanus
           petrolearius DSM 11571]
          Length = 1055

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 91/300 (30%), Gaps = 32/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D +            +  ++   KPD   +
Sbjct: 29  SGSQACRALREEGVEVVLVNSNPATIQTDPDTADVVYVEPLKAGIIAKIIEKEKPDGILS 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          LE +EI  T    +      +K R         +P    + 
Sbjct: 89  GMGGQTGLNLTAELAEMGALEDVEILGTPLEAIYKGEDREKFRDLMNDIGEPIPRSMILR 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++  ++  P +I+P       G  V    + +   +      +   Q+LIE+ V
Sbjct: 149 SMDQLDNALEIVGLPAIIRPAYTLGGAGGGVAHTPEELRKIVEIGLQRSRIHQVLIEESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G               T + V   +       ++  +        +  + +  ++  A 
Sbjct: 209 MGW-KEIEYEVMRDSFDTCLIVCGMENVDAMGIHTGESVVVAPILTLTDEEFHLLRTAAI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G       F         +E+N  P ++  S     +   GY    +   +
Sbjct: 268 KIIRALDVQGGCNIQMAF--KDGDYRIIEVN--PRVSRSS--ALASKATGYPIARVAAKI 321


>gi|299138701|ref|ZP_07031879.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX8]
 gi|298599337|gb|EFI55497.1| acetyl-CoA carboxylase, biotin carboxylase [Acidobacterium sp.
           MP5ACTX8]
          Length = 457

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 54/147 (36%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   G+ + +  + +P    Q+S+         E Y++      
Sbjct: 147 WAQSVKYPVILKAVAGGGGRGMRICRSKEELPALYQQASTEALNAFGNGELYMEKFIERP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
             +    L      V         ++          P+ +I     +E+ ++   + + I
Sbjct: 207 RHIEFQVLADEHGNVMSLGERECSIQRRHQKLIEEAPSLQITPKQREEMGKVIKRSLKDI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D    +++++E+N +
Sbjct: 267 GYWNAGTIEFLMDE-DGQIYFIEMNTR 292


>gi|260436465|ref|ZP_05790435.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           8109]
 gi|260414339|gb|EEX07635.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp. WH
           8109]
          Length = 1107

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 99/314 (31%), Gaps = 41/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   GF+V  I+ + +                     V  V+   +PD    
Sbjct: 29  SGTQAIKALRAEGFEVILINSNPASIMTDPEMADRTYIEPLTPDVVTRVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLERFGVELIGADLKAIQKAEDRLLFKQAMERIGVKVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSQEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA- 279
              +  +     G S   F  +P +  V  +E+N  P ++  S            ++AA 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDNGDVVVIEMN--PRVSRSSALASKATGFPIAKIAAR 326

Query: 280 -YAGYSFRELLLWM 292
              GY+  E+L  +
Sbjct: 327 LAVGYTLDEILNDI 340


>gi|121602954|ref|YP_980283.1| biotin carboxylation domain-containing protein [Polaromonas
           naphthalenivorans CJ2]
 gi|120591923|gb|ABM35362.1| biotin carboxylation domain protein [Polaromonas naphthalenivorans
           CJ2]
          Length = 1203

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 57/181 (31%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +I+ D  +             +      +++       
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMRLIRNDAEMAPAFEAVQRLAQANFKDAGLFLEKFVERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V          +  +       PA    +     +Q+ A    +A+ 
Sbjct: 207 HIEVQLFGDGRGQVVSLGERDCSAQRRNQKVIEETPAPGLDEATRAALQQTAVRLAEAVH 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +++ D  +   ++LE+N +     G+T            G    +L+ WM+  
Sbjct: 267 YRSAGTVEYVLDADTGAFYFLEVNTRLQVEHGVTE--------QVTGV---DLVAWMLRL 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|299149116|ref|ZP_07042177.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_23]
 gi|298512783|gb|EFI36671.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_23]
          Length = 1075

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|293370266|ref|ZP_06616826.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CMC 3f]
 gi|292634763|gb|EFF53292.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CMC 3f]
          Length = 1075

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|260174410|ref|ZP_05760822.1| carbamyl phosphate synthetase [Bacteroides sp. D2]
 gi|315922678|ref|ZP_07918918.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696553|gb|EFS33388.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1075

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +Q +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEQQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|294506967|ref|YP_003571025.1| carbamoyl-phosphate synthase large chain [Salinibacter ruber M8]
 gi|294343295|emb|CBH24073.1| Carbamoyl-phosphate synthase large chain [Salinibacter ruber M8]
          Length = 942

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL D G++V  ++ +                      S+  +    +PD    
Sbjct: 29  SGSQSARALMDEGYRVVLVNSNPATIMTDPLMADEVYLRPLTPSSIAQIAREEEPDAVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G    +D       +   I      I    ++ D+   + ++   G+    S  
Sbjct: 89  TMGGQTGLNVAQDLKKDGFWDEEGIDVIGVDIDTVQITEDRQEFRTLMDDIGLDQSRSDT 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +Q L   P VI+P       G  ++ K+      + +    +   Q+LI+
Sbjct: 149 AKSLLEAKEITQELGGLPVVIRPSYTLGGSGGGIVWKEDEFEEMVTRGLELSPAHQVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 ECLFGWKEYELELLRDPNDNVIIIASIENVTPMGVHTGDSVTVAPQQTLTDKQFQRMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                +      G     F F+P + ++  +EIN  P ++  S     +   GY   ++ 
Sbjct: 269 AIKAMNSIGTFAGGCNIQFAFEPGTGRMIVIEIN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 SKL 327



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 80/266 (30%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P+     L G        +   + +++  T    + 
Sbjct: 612 DKLYFEPVFW---ERVQDVIDLEQPEGVILQLGGQTAIKLGERFEEDGIQVLGTSYSKMD 668

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                 K  S         P           +++   +  P +I+P       G+ +   
Sbjct: 669 LVEDRGKFTSILQKLDIPFPPYGVAHSVEEALETAGRLGYPTLIRPSYVLGGEGMRIAIN 728

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  +   +         +++L++++  D +EL    + D         +   +       
Sbjct: 729 EDEVAEYVGNVLETYPDNEILLDRFLEDAVELDVDAICDGDEVWIAGMMQHIEPAG---V 785

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  ++   ++         +   G+     +       V+ +E N +
Sbjct: 786 HSGDSTAVLPPFSLSDEVLDTIREYVRALAFELDVLGLVNVQLIV--KDGTVYVIEANPR 843

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P +A  AG     +   
Sbjct: 844 ASRT----VPFIAKAAGIPIPAIATK 865


>gi|124027199|ref|YP_001012519.1| carbamoyl phosphate synthase large subunit [Hyperthermus butylicus
           DSM 5456]
 gi|167006440|sp|A2BJL3|CARB_HYPBU RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|123977893|gb|ABM80174.1| Carbamoyl-phosphate synthase large chain [Hyperthermus butylicus
           DSM 5456]
          Length = 1073

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       V  V+   +PD    
Sbjct: 29  SGSQALKALREEGIETVLVNPNVATIQTSYKLADHVYLGPLQPWFVEKVIERERPDAILL 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V+           + +  T    +  ALS  K R   + +   VP    
Sbjct: 89  GFGGQTALSLGVELHRRGILSRYGIRVLGTPIEGIEKALSRGKFRETMMKAGLPVPPSTP 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + + I  P +++        G +V    + +   L+++ +++   ++L+E+
Sbjct: 149 ATSVEEALRAANEIGYPVIVRVSFNLGGGGSLVAWSREELERWLVRAFAFSGTGEVLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+                   +AV   +       ++  +        +    Y+ ++  
Sbjct: 209 YLHYW-KEIEYEVVRDQYGNMVAVACLENADPMGVHTGESVVIAPCQTLTDQEYQLLREA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSR-KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    +AIG  G        +P    + + +E N  P M+  S     +   GY    + 
Sbjct: 268 SLRVAEAIGLVGEGNVQLALNPRDSWEYYVIETN--PRMSRSS--ALASKATGYPLAYIA 323

Query: 290 LWM 292
             +
Sbjct: 324 AKL 326


>gi|147920232|ref|YP_686001.1| phosphoribosylglycinamide formyltransferase 2 [uncultured
           methanogenic archaeon RC-I]
 gi|121676376|sp|Q0W4L8|PURT_UNCMA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|110621397|emb|CAJ36675.1| phosphoribosylglycinamide formyltransferase [uncultured
           methanogenic archaeon RC-I]
          Length = 426

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/250 (14%), Positives = 75/250 (30%), Gaps = 9/250 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           R++  ++   KPD     +     +             P  ++   A     +++R    
Sbjct: 69  RALLAIVEKEKPDAIIPEIEAINTDTLFKLEKEGFFVAPCANAVWTAMH--RERLREAIA 126

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            +                  +   I  P V KP+   S  G  V+K  + +     +++ 
Sbjct: 127 STGARTSKYEYATDLESFKAACKKIGFPCVSKPIMSSSGKGSYVLKSSKDVEKAFKEAAK 186

Query: 160 WNHGDQL-----LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                        I+  V+   L+   +       ++   P   +      ++S +    
Sbjct: 187 ARGSSDKIIVEEFIDFDVEITALSVRYLNGKGKPESKFVRPLGHYQIEGDYHASWHPWTD 246

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
              K    + KE+   A      +G  G+   +   D  + KV+  E   +P      + 
Sbjct: 247 ATDKKIDKLEKEIYDYAGRIMDKLGGYGLFAHEMFVDTKNGKVYANETACRP--HDTGLV 304

Query: 275 PEMAAYAGYS 284
              +   GYS
Sbjct: 305 TIASMPFGYS 314


>gi|83816722|ref|YP_445092.1| carbamoyl-phosphate synthase, large subunit [Salinibacter ruber DSM
           13855]
 gi|83758116|gb|ABC46229.1| carbamoyl-phosphate synthase, large subunit [Salinibacter ruber DSM
           13855]
          Length = 942

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/303 (14%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL D G++V  ++ +                      S+  +    +PD    
Sbjct: 29  SGSQSARALMDEGYRVVLVNSNPATIMTDPLMADEVYLRPLTPSSIAQIAREEEPDAVLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G    +D       +   I      I    ++ D+   + ++   G+    S  
Sbjct: 89  TMGGQTGLNVAQDLKKDGFWDEEGIDVIGVDIDTVQITEDRQEFRTLMDDIGLDQSRSDT 148

Query: 113 VN---RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                     +Q L   P VI+P       G  ++ K+      + +    +   Q+LI+
Sbjct: 149 AKSLLEAKEITQELGGLPVVIRPSYTLGGSGGGIVWKEDEFEEMVTRGLELSPAHQVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 ECLFGWKEYELELLRDPNDNVIIIASIENVTPMGVHTGDSVTVAPQQTLTDKQFQRMRDA 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
                +      G     F F+P + ++  +EIN  P ++  S     +   GY   ++ 
Sbjct: 269 AIKAMNSIGTFAGGCNIQFAFEPGTGRMIVIEIN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 SKL 327



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 30/266 (11%), Positives = 80/266 (30%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  V+   +P+     L G        +   + +++  T    + 
Sbjct: 612 DKLYFEPVFW---ERVQDVIDLEQPEGVILQLGGQTAIKLGERFEEDGIQVLGTSYSKMD 668

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                 K  S         P           +++   +  P +I+P       G+ +   
Sbjct: 669 LVEDRGKFTSILQKLDIPFPPYGVAHSVEEALETAGRLGYPTLIRPSYVLGGEGMRIAIN 728

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           +  +   +         +++L++++  D +EL    + D         +   +       
Sbjct: 729 EDEVAEYVGNVLETYPDNEILLDRFLEDAVELDVDAICDGDEVWIAGMMQHIEPAG---V 785

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  ++   ++         +   G+     +       V+ +E N +
Sbjct: 786 HSGDSTAVLPPFSLSDEVLDTIREYVRALAFELDVLGLVNVQLIV--KDGTVYVIEANPR 843

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P +A  AG     +   
Sbjct: 844 ASRT----VPFIAKAAGIPIPAIATK 865


>gi|226507364|ref|NP_001147055.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
 gi|195606940|gb|ACG25300.1| methylcrotonoyl-CoA carboxylase subunit alpha [Zea mays]
          Length = 751

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 28/191 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IKP  GG   G+ ++++       +L +       +     L+ +      
Sbjct: 200 ADKIGYPVLIKPTHGGGGKGMRIVERPDEFVDSVLSAQREAAASFGVNTLLIEKYITQPR 259

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +            K         +PA    +    +   A  A 
Sbjct: 260 HVEVQVFGDQHGNAIYLYERDCSLQRRHQKIIEEAPAPNVPA----EFRSHIGGAAVSAA 315

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
           +A+G       +F+ D LS + +++E+N +              +       G   ++L+
Sbjct: 316 KAVGYYNAGTVEFIVDTLSGEFYFMEMNTR----------LQVEHPVTEMIVG---QDLV 362

Query: 290 LWMVEDASCLR 300
            W +  A+  R
Sbjct: 363 EWQIRVANGER 373


>gi|7157935|gb|AAF37347.1|AF170808_1 D-alanine:D-alanine ligase [Lactococcus garvieae]
          Length = 198

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 6/190 (3%)

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
               + S  +   L+ D   +  V     V         +   + Q  ++ P  +KP   
Sbjct: 12  PKYLSASSTMDKLLANDVFTAVGVPQVPYVAAYADENQEKIHAEVQDKLTFPVFVKPANM 71

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE---I 192
           GSS+GI  +   + +   L  +    + ++++IEQ V+  E+ C V+G+     +     
Sbjct: 72  GSSVGISKVSSLEELEAGLAVAY--KYDNRVVIEQGVNAREIECAVLGNGGKVRSTLPGE 129

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
            V   DFY Y  KY        +PA IP ++ ++++  A  A+QA+   G+SR DF +D 
Sbjct: 130 VVKDVDFYDYRSKYIDNKIEMAIPADIPAEVAEKMRHYAEKAYQAMNGAGLSRCDFFYD- 188

Query: 253 LSRKVFWLEI 262
               ++  EI
Sbjct: 189 QKGDIYLNEI 198


>gi|78222204|ref|YP_383951.1| biotin carboxylase/acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Geobacter metallireducens
           GS-15]
 gi|78193459|gb|ABB31226.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Geobacter
           metallireducens GS-15]
          Length = 446

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 87/284 (30%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A ++ G K   +       S+ + LA                  +   +     
Sbjct: 14  ALRVIRACKELGIKTVAVYSVADKDSLHVKLADESVCIGPAPSLQSYLNINAIISAAEVT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
                    G   E+     I E   I +      +  +  DK+ ++Q V    VP+   
Sbjct: 74  DAEAIHPGYGFLSENAAFAEICENCGITFIGPSSESMRIMGDKISARQAVIKEDVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +      +     I  P +IK   GG   G+ ++    ++P           + + 
Sbjct: 134 TKEGVNDVNEAIKIAKGIGFPVIIKATAGGGGRGMKIVHSPATLPNAFATARAEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +   +   +   +M D   +V  +            +             +  
Sbjct: 194 NPEVYIEKYCEEPRHVEIQIMADKHGNVIHLGERDCSIQ----RRHQKIIEEAPCPVMTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ K +   A  A +A+G   +   +FL D  +   +++E+N +
Sbjct: 250 NLRKAMGDAAVRAAKAVGYDSVGTVEFLVD-KNLNFYFMEMNTR 292


>gi|322505476|emb|CAM42777.2| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              +  P +IK + GG   G+ ++++ +     L       ++ +     +L        
Sbjct: 159 ADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREATNFFKDDRVILERYVKRSR 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            + C +  D                    +             + ++  + +  +A  A 
Sbjct: 219 HIECQIFCDKHSRGVFFFERDCSVQ----RRYQKVLEEAPAPHLSMETRQRIGEVALQAA 274

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +F+FD  +   +++E+N +
Sbjct: 275 KAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|302420575|ref|XP_003008118.1| methylcrotonoyl-CoA carboxylase subunit alpha [Verticillium
           albo-atrum VaMs.102]
 gi|261353769|gb|EEY16197.1| methylcrotonoyl-CoA carboxylase subunit alpha [Verticillium
           albo-atrum VaMs.102]
          Length = 683

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/279 (13%), Positives = 80/279 (28%), Gaps = 32/279 (11%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------------DLAFN-------- 56
                   +  G + + +  D       A   P              D   +        
Sbjct: 48  ALRIHKTADRLGIRTTTLYTDPDASSQHAACSPHSLSLGNPKAYLDGDRIISLAKQHGIQ 107

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+    +  E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 108 ALHPGYGFLSENPAFASRCEKEGIVFVGPPAKAMHDMGDKARSKEIMTAAGVPCVPGYHG 167

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         +  P ++K +KGG   G+ ++  +   P  L  +            
Sbjct: 168 ADQEEAQLLQHAREVRFPVLLKSVKGGGGKGMRIVLTEDEFPAQLRSARLEAKASFGDGG 227

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
           + +   +              +              ++          PA    +    +
Sbjct: 228 EVMLVEKYIVRPRHVEVQVFADKHGNCVALGERDCSVQRRHQKILEESPAPCLDEATRLD 287

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+   G    +F+ D  + + +++E+N +
Sbjct: 288 LWDKARKAASAVDYVGAGTVEFILDRDTGEFYFMEMNTR 326


>gi|255654105|ref|ZP_05399514.1| pyruvate carboxylase [Clostridium difficile QCD-23m63]
 gi|296449856|ref|ZP_06891623.1| pyruvate carboxylase [Clostridium difficile NAP08]
 gi|296877920|ref|ZP_06901940.1| pyruvate carboxylase [Clostridium difficile NAP07]
 gi|296261343|gb|EFH08171.1| pyruvate carboxylase [Clostridium difficile NAP08]
 gi|296431117|gb|EFH16944.1| pyruvate carboxylase [Clostridium difficile NAP07]
          Length = 1143

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 81/243 (33%), Gaps = 18/243 (7%)

Query: 35  QID--VDRSVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            ID  +D    + LA   K D      +G   E+       E   I +         +  
Sbjct: 60  PIDAYLDMDGIIDLAKRKKVDAIHPG-YGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P     I       +  + I  P +IK   GG   G+ ++  +
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHHE 178

Query: 148 QSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S     +      + +   D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYERDCSVQ-- 236

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +       +     +   + KE+   A    + +G       +FL D      +++E+
Sbjct: 237 --RRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIEM 293

Query: 263 NVQ 265
           N +
Sbjct: 294 NTR 296


>gi|209155606|gb|ACI34035.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Salmo salar]
          Length = 708

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/190 (16%), Positives = 61/190 (32%), Gaps = 27/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK ++GG   G+ +    +     L         S+N    L+ +   D  
Sbjct: 183 AVRIGYPVMIKAVRGGGGKGMRISHTAEDFHEQLESARREARKSFNDDVMLVEKFVEDPR 242

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +            +             I  ++  ++   A  A 
Sbjct: 243 HVEVQVFGDQHGNAVYLFERDCSVQ----RRHQKIIEEAPGPGISEEVRCKLGEAAVRAA 298

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+   G    +F+ D      +++E+N       P         EM      +  +L+ 
Sbjct: 299 KAVNYVGAGTVEFIMDAQHN-FYFMEMNTRLQVEHP-------VSEM-----ITGTDLVE 345

Query: 291 WMVEDASCLR 300
           W +  A+  R
Sbjct: 346 WQLRVAAGER 355


>gi|154342794|ref|XP_001567345.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania braziliensis MHOM/BR/75/M2904]
          Length = 687

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              +  P +IK + GG   G+ ++++ +     L       ++ +     +L        
Sbjct: 159 ADKVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREATNFFKDDRVILERYVKRSR 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            + C +  D                    +             + ++  + +  +A  A 
Sbjct: 219 HIECQIFCDKHSRGVFFFERDCSVQ----RRYQKVLEEAPAPHLSMETRQRIGEVALQAA 274

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +F+FD  +   +++E+N +
Sbjct: 275 KAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|119716658|ref|YP_923623.1| carbamoyl-phosphate synthase large subunit [Nocardioides sp. JS614]
 gi|119537319|gb|ABL81936.1| carbamoyl-phosphate synthase large subunit [Nocardioides sp. JS614]
          Length = 1143

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/298 (12%), Positives = 91/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVVLVNSNPATIMTDPEFADATYVEPITPEFVEKVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       + +LE   +    +   A     ++     +V+S G  V  S++
Sbjct: 89  TLGGQTALNAAIALHERGVLEEYGVEMIGASFEAIHRGENRELFNGIVASVGGEVARSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +       +   +  P V++P       G  +   +  +        + +   ++LIE+
Sbjct: 149 CHSLEDCEKAVVELGYPVVVRPSFTMGGTGSGIAYDESDLARIAGAGLAASPTTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEYELEVMRDKADNVVIVCSIENVDPMGVHTGDSITVAPAMTLTDREYQRLRDLS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +     G     +  +P+  +V  +E+N  P ++  S     +   G+   ++
Sbjct: 269 IAIIREVGVDTGGCNIQYAVNPVDGRVIVIEMN--PRVSRSS--ALASKATGFPIAKI 322


>gi|30262539|ref|NP_844916.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Ames]
 gi|47527837|ref|YP_019186.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49185379|ref|YP_028631.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Sterne]
 gi|65319846|ref|ZP_00392805.1| COG0439: Biotin carboxylase [Bacillus anthracis str. A2012]
 gi|165868978|ref|ZP_02213638.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0488]
 gi|167632393|ref|ZP_02390720.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0442]
 gi|167637712|ref|ZP_02395991.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0193]
 gi|170685161|ref|ZP_02876385.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0465]
 gi|177649396|ref|ZP_02932398.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0174]
 gi|190565541|ref|ZP_03018461.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227814642|ref|YP_002814651.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. CDC 684]
 gi|229604333|ref|YP_002866862.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0248]
 gi|254685115|ref|ZP_05148975.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. CNEVA-9066]
 gi|254722524|ref|ZP_05184312.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. A1055]
 gi|254737566|ref|ZP_05195269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Western North America USA6153]
 gi|254743250|ref|ZP_05200935.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Kruger B]
 gi|254751881|ref|ZP_05203918.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Vollum]
 gi|254760401|ref|ZP_05212425.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           anthracis str. Australia 94]
 gi|30257171|gb|AAP26402.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. Ames]
 gi|47502985|gb|AAT31661.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. 'Ames Ancestor']
 gi|49179306|gb|AAT54682.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Bacillus
           anthracis str. Sterne]
 gi|164715704|gb|EDR21221.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0488]
 gi|167514261|gb|EDR89628.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0193]
 gi|167532691|gb|EDR95327.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0442]
 gi|170670521|gb|EDT21260.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0465]
 gi|172084470|gb|EDT69528.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0174]
 gi|190563568|gb|EDV17533.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis Tsiankovskii-I]
 gi|227004962|gb|ACP14705.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. CDC 684]
 gi|229268741|gb|ACQ50378.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           anthracis str. A0248]
          Length = 445

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEIAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDEQKN-FYFLEMNTR 292


>gi|228927604|ref|ZP_04090656.1| Biotin carboxylase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
 gi|228832084|gb|EEM77669.1| Biotin carboxylase [Bacillus thuringiensis serovar pondicheriensis
           BGSC 4BA1]
          Length = 445

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDEQKN-FYFLEMNTR 292


>gi|212636804|ref|YP_002313329.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           piezotolerans WP3]
 gi|212558288|gb|ACJ30742.1| Phosphoribosylglycinamide formyltransferase 2 [Shewanella
           piezotolerans WP3]
          Length = 391

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 29/281 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  V+   KPDL    L
Sbjct: 22  GKEVAIELQRYGIEVIAVDRYPNAPAMQIAHRSHVINMLDAEALEQVINLEKPDLVIPEL 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  IP   +  L       +  + + ++                 
Sbjct: 82  EAIATQALVELEAKGVNIIPTAKATQLTMDREGIRCLAAETLAIPT-SPYFFCDTEIEFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  V++ +  I        +   G        V+G    
Sbjct: 141 KAISQIGLPCVVKPVMSSSGKGQSVVRGEAQIDSA--WQYAQEGGRAGGGRVIVEGFIAF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++               +            P  +   +  + Q +     +A+
Sbjct: 199 DYEITLLTISAVNGIHFCDAIGHRQEDG--DYRESWQPQVMSDIVKAKAQEIGEKVVKAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           G  G+   +         V++ E++ +P      +   ++ 
Sbjct: 257 GGYGLFGVELFI--KGDDVYFSEVSPRP--HDTGMVTMISQ 293


>gi|196036698|ref|ZP_03104090.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus W]
 gi|228933835|ref|ZP_04096681.1| Biotin carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228946185|ref|ZP_04108518.1| Biotin carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|195990662|gb|EDX54638.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus W]
 gi|228813476|gb|EEM59764.1| Biotin carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228825907|gb|EEM71694.1| Biotin carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 445

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDEQKN-FYFLEMNTR 292


>gi|218903677|ref|YP_002451511.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH820]
 gi|229122086|ref|ZP_04251302.1| Biotin carboxylase [Bacillus cereus 95/8201]
 gi|218538911|gb|ACK91309.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH820]
 gi|228661429|gb|EEL17053.1| Biotin carboxylase [Bacillus cereus 95/8201]
          Length = 445

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDEQKN-FYFLEMNTR 292


>gi|268591317|ref|ZP_06125538.1| phosphoribosylglycinamide formyltransferase 2 [Providencia rettgeri
           DSM 1131]
 gi|291313293|gb|EFE53746.1| phosphoribosylglycinamide formyltransferase 2 [Providencia rettgeri
           DSM 1131]
          Length = 392

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  +++  KPD+    +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYDNAPAMHIAHRSYTINMLDGEALKQIVSREKPDIIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   + +L       +  + + +          +  N   +
Sbjct: 84  EAIATQVLMELEQQGQKVVPSAKAIVLTMDREGIRRLAAEELKLPT-SEYQFVDSNPDFI 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  VI+    +            G +    + +    + 
Sbjct: 143 AAAEKIGFPCIVKPVMSSSGKGQSVIRSRAELDQA---WDYSQQGGRAGQGRVIVEKMVN 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                          +       +  +          P  +     K+ Q +A     ++
Sbjct: 200 FDFEITLLTVSAVDGIHFCAPIGHR-QEKGDYRESWQPQYMSEAALKKAQDIAKKIVTSL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  GI   +         + + E++ +P   GM
Sbjct: 259 GGYGIFGVELFVCGDD--IIFNEVSPRPHDTGM 289


>gi|313897758|ref|ZP_07831299.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2]
 gi|312957293|gb|EFR38920.1| carbamoyl-phosphate synthase, large subunit [Clostridium sp. HGF2]
          Length = 1071

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/312 (15%), Positives = 89/312 (28%), Gaps = 41/312 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G    ++L + G++V  I+ +                          V+   +PD     
Sbjct: 30  GCQACTSLREEGYEVILINSNPATIMTDTVIADRVYIEPLTLEFASRVIYKERPDAILGS 89

Query: 58  LHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G + +V+           +EI  T    +  A   DK R         VP    +
Sbjct: 90  LGGQTGLNLVVELAESGILDEYHVEILGTALDAIEKAEDRDKFRELMYEIGEPVPESVIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +        P V++P       G      ++ + +        +   Q LIEQ 
Sbjct: 150 HTIEEAVAFACENGYPVVVRPAFTLGGTGGGFAHSEEELRVICDNGLKISPVHQCLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G                 I V   +       ++  +        +       ++  A
Sbjct: 210 IAG-YKEIEYEVMRDNADNAIVVCNMENVDPVGIHTGDSIVVAPTQTLTDRECGIMRASA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL--- 288
               +A+   G        DP S   + +E+N  P ++  S     +   GY   +L   
Sbjct: 269 LKIIRALKICGGCNVQLALDPNSFNYYVIEVN--PRVSRSS--ALASKATGYPIAKLAAK 324

Query: 289 ------LLWMVE 294
                 L  ++ 
Sbjct: 325 VAVGLTLDEIIN 336



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/293 (13%), Positives = 90/293 (30%), Gaps = 37/293 (12%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C   + + G++   I+ +                       V  V+   +P        G
Sbjct: 577 CVKTIRERGYEAIVINNNPETVSTDYSISDKLYFEPLTIEDVMHVIDLEQPLGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   + +   ++I  T    +  A    +            P   + +     +  
Sbjct: 637 QTAINLADKLVARGVKILGTSLEDIDRAEDRHEFEEMLHKLDIPQPQGETAVEVEEAVKI 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIELTC 179
            + I  P +++P        + ++  D  + + +       +H   +L+++Y+ G E+  
Sbjct: 697 ANRIGYPVLVRPSYVLGGRAMEIVHNDDDLRVYMATAVKEISHDAPILVDKYIIGKEMEV 756

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             + D          P    +       S +S  V PA      +   +   A    +  
Sbjct: 757 DAICDGEHVYI----PGIMEHIERAGVHSGDSISVYPAPTASQKVKDTIIDYATRIGKGF 812

Query: 239 GCRGISRSDFLF--DPLSRK--VFWLEINVQPGMTPVSIFPEMAAYA--GYSF 285
              G+    F+   D  S +  V+ LE+N +   T     P ++     G S+
Sbjct: 813 HFIGLYNIQFIVETDKKSGEERVYVLEVNPRSSRT----VPFLSKVTNVGMSY 861


>gi|197334701|ref|YP_002156299.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           MJ11]
 gi|197316191|gb|ACH65638.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           MJ11]
          Length = 391

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 79/268 (29%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  GF+V  +D                +D     ++  V+   +PD     +
Sbjct: 22  GKEVAIECQRLGFEVIAVDRYLNAPAMQVAHRSYAIDMLDANALEEVINKEQPDFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +          +      +
Sbjct: 82  EAIATDKLVELEKQGLNVVPTANATKLTMNREGIRRLAAEELQLPT-SPYRFVDSYEELV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P VIKP+   S  G  VIK +      +  S  +           V      
Sbjct: 141 EAVKFVGMPCVIKPVMSSSGKGQSVIKTEAD----IRTSWDYAQDGGRSGAGRVIVEGFV 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 + L V  +            +          P  +     K+ Q  A     A+
Sbjct: 197 DFDYEISLLTVRAVDGVHFCAPIGHRQEDGDYRESWQPQVMTEAALKQAQNAAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +        ++++ E++ +P
Sbjct: 257 GGYGLFGVELFI--KGDRIYFNEVSPRP 282


>gi|54025589|ref|YP_119831.1| carbamoyl phosphate synthase large subunit [Nocardia farcinica IFM
           10152]
 gi|54017097|dbj|BAD58467.1| putative carbamoyl-phosphate synthase large subunit [Nocardia
           farcinica IFM 10152]
          Length = 1110

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 96/313 (30%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLKSEGLRVSLVNSNPATIMTDPEFADATYVEPITPEFVEKVIAKERPDAILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       + +LE   +    +   A     D+ + K +V+  G     S +
Sbjct: 89  TLGGQTALNTAVALHERGVLEKYGVELIGADFDAIQRGEDRQKFKDIVAKVGGESARSRV 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +    +  P V++P      LG  +   D+ +        + +    +LIE+
Sbjct: 149 CFTMDEVRETVAELGFPVVVRPSFTMGGLGSGMAYNDEDLDRIAGGGLAASPTANVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SILGWKEYELELMRDGRDNVVVVCSIENVDPMGVHTGDSMTVAPAMTLTDREYQKLRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G     F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 IAILREVGVDTGGCNIQFAVNPRDGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AIGYTLDEIVNDI 339


>gi|319956001|ref|YP_004167264.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Nitratifractor salsuginis DSM 16511]
 gi|319418405|gb|ADV45515.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Nitratifractor salsuginis DSM 16511]
          Length = 388

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 76/273 (27%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D      V  ++   +P      +
Sbjct: 23  GKEVAIEAQRLGIEVIAVDKYKHAPAHLVAHRSYAIDMQDKEQVLELIEKERPTYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E            IP   +    +    +                  +       
Sbjct: 83  EAISIEALFEAERRGFHVIPNAEAVN-KTMNRKNIRVFAAETLGLTTSAYRFVSSLEELK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P VIKP+   S  G  + +  + +P     +         LI +     +  
Sbjct: 142 EAAEALGFPCVIKPVMSSSGHGQSIARSPEDLPKSWEIAKEARGDASELIVEEFIPFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P  +     K+ Q +A      +
Sbjct: 202 ITLLTVRNETGTVFCEPIGHI-----QQDGDYILSWQPMPMKEAALKKAQEIAKAVTDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G RGI   +F       +V++ E++ +P   GM
Sbjct: 257 GGRGIFGVEFFV--KGEEVYFSELSPRPHDTGM 287


>gi|188997479|ref|YP_001931730.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932546|gb|ACD67176.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 392

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/276 (10%), Positives = 69/276 (25%), Gaps = 29/276 (10%)

Query: 22  CASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVLHGN 61
              A+   G +V  +D                +D   G ++       KPD     +   
Sbjct: 27  VIEAMR-LGIEVIAVDSYQNAPAQQIAHRYYVIDMKNGDLIKDIAYREKPDFIVPEIEAI 85

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
             +  +         +P  ++          +  + + V                     
Sbjct: 86  DTDALIELEKKGFSIVPCANAVKHTMNRISIRRLAAEKVGLKT-SKYAFASDIETYRQKV 144

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P V+KP+   S  G  +++    I      +     G    +        +    
Sbjct: 145 KEIGLPCVVKPIMSSSGKGQSIVRSLDEIDRAWYYAQENARGKSGEVIIEE---FINFDY 201

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                   T+            ++          P  +      + + +A      +G  
Sbjct: 202 EITLLTVRTKNQGTLFCEPIGHMQVDGDYWESWQPHPMSQTALNKAKEIAKKITDELGGY 261

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           GI   +        +V++ EI+ +P      +   +
Sbjct: 262 GIFGCEMFV--KEDEVWFNEISPRP--HDTGMVTMI 293


>gi|126699547|ref|YP_001088444.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile 630]
 gi|254975533|ref|ZP_05272005.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-66c26]
 gi|255092921|ref|ZP_05322399.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile CIP 107932]
 gi|255101066|ref|ZP_05330043.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-63q42]
 gi|255306931|ref|ZP_05351102.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile ATCC 43255]
 gi|255314662|ref|ZP_05356245.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-76w55]
 gi|255517336|ref|ZP_05385012.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-97b34]
 gi|255650442|ref|ZP_05397344.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile QCD-37x79]
 gi|260683554|ref|YP_003214839.1| biotin carboxylase acetyl-CoA carboxylase subunit A [Clostridium
           difficile CD196]
 gi|260687214|ref|YP_003218348.1| biotin carboxylase acetyl-CoA carboxylase subunit A [Clostridium
           difficile R20291]
 gi|115250984|emb|CAJ68813.1| Acetyl-CoA carboxylase subunit [Clostridium difficile]
 gi|260209717|emb|CBA63475.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile CD196]
 gi|260213231|emb|CBE04737.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Clostridium
           difficile R20291]
          Length = 453

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/269 (14%), Positives = 94/269 (34%), Gaps = 30/269 (11%)

Query: 21  ACASALEDAGF------KVSQIDVD---------RSVGLVLAHLKPDLAFNVLHGNFGED 65
           A  S ++   F      +   I  +          ++  +   LK D       G   E+
Sbjct: 30  AIYSEIDKDCFHRYIADESICIGPNNISKSYNNIENIIYLALKLKCDAIHPGF-GFLSEN 88

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQ 121
                  E   I +         L  DK R+++ +    +PV P     +      ++  
Sbjct: 89  PEFAKQCEDNNIIFIGPTREQMILMGDKSRARETMMELNIPVVPGSESVLKTKEEALEVA 148

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIE 176
             I  P +IK   GG   G+ +++K++ +  +   +SS     +++ D  + +   +   
Sbjct: 149 REIGYPVMIKASSGGGGKGMRIVRKEEELFSNFDMASSEALAAFSNSDLYMEKFIENPRH 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   V GD   +   +            + +       L   +  +  +++ ++A    +
Sbjct: 209 IEVQVFGDKHSNAIHLGDRDCSMQ----RRNQKVIEESLSPYLSDEERQKLHKIAVDIVK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G  G    +F+ D      +++E+N +
Sbjct: 265 GVGYIGAGTIEFIVDKDKN-FYFIEMNTR 292


>gi|218526216|gb|ACK86515.1| carbamoyl-phosphate synthase [Negha inflata]
          Length = 711

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                       +  V+   +PD    
Sbjct: 120 SGSQAIKALKEEGIQTVLVNPNIATVQTSKGLADKVYFLPLVPEYIEQVIRSERPDGVLL 179

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPS 110
              G      G +     I          + I +   + D+    + V+  +  V    +
Sbjct: 180 TFGGQTAFNCGVELEKSNIFNKYGCHILGTPIDSIIETEDRRIFAERVNEINEKVAPSEA 239

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   ++ H  QL+I++
Sbjct: 240 VSSIEEALNAAERLRYPVMARAAFSLGGLGSGFANNKEELVS--LAQQAFAHSTQLIIDK 297

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 298 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 356

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 357 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 412

Query: 291 WM 292
            +
Sbjct: 413 KL 414


>gi|237750282|ref|ZP_04580762.1| biotin carboxylase [Helicobacter bilis ATCC 43879]
 gi|229374176|gb|EEO24567.1| biotin carboxylase [Helicobacter bilis ATCC 43879]
          Length = 470

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/255 (17%), Positives = 86/255 (33%), Gaps = 17/255 (6%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I E   I +         +  DK ++K  +   GVPV 
Sbjct: 96  FEADAIFPG-YGFLSENQNFVEICEHHNIEFIGPSKEVMMIMSDKSKAKDCMKEAGVPVI 154

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWN 161
                 +   +  ++    I  P ++K   GG   G+ V+      +++ L     +   
Sbjct: 155 VGSDGALKSYKEALEVADKIGYPVILKAAAGGGGRGMRVVPDKGLLKNLYLAAESEALSA 214

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            GD  +  +          V   A        V   +      +             +  
Sbjct: 215 FGDGTIYMEKFINKPKHIEVQILADKHG--NVVHIGERDCSMQRRQQKLIEETPAVVLSD 272

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           ++ K +   A  A + I   G    +FL D  ++  +++E+N +  +       EM   +
Sbjct: 273 EVRKNLLDTAIKAAKHIKYVGAGTFEFLLDSNNKDFYFMEMNTR--LQVEHTVSEM--VS 328

Query: 282 GYSFRELLLWMVEDA 296
           G    +L+ WM+  A
Sbjct: 329 GL---DLVEWMIRIA 340


>gi|154492499|ref|ZP_02032125.1| hypothetical protein PARMER_02133 [Parabacteroides merdae ATCC
           43184]
 gi|154087724|gb|EDN86769.1| hypothetical protein PARMER_02133 [Parabacteroides merdae ATCC
           43184]
          Length = 1090

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIAKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +   GV    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYNVRVLGTPVQAIMDTEDRELFVRKLDEIGVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSSQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|189465564|ref|ZP_03014349.1| hypothetical protein BACINT_01922 [Bacteroides intestinalis DSM
           17393]
 gi|189437838|gb|EDV06823.1| hypothetical protein BACINT_01922 [Bacteroides intestinalis DSM
           17393]
          Length = 1077

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIYTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       + E   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYKDGVFEKYGVKVLGTPVQAIIDTEDREIFVHKLNEINVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENAIDARRAAAELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|156367122|ref|XP_001627268.1| predicted protein [Nematostella vectensis]
 gi|156214173|gb|EDO35168.1| predicted protein [Nematostella vectensis]
          Length = 571

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 60/189 (31%), Gaps = 21/189 (11%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                      P ++K ++GG   G+ ++         L  + + +          V+  
Sbjct: 140 SIHFYSSTSKYPVMLKAVRGGGGKGMRIVNSPDEFHEMLESAKNESIKSFNDDSMLVEKF 199

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
             T   +        +  V         ++          PA  +  ++ + +   A  A
Sbjct: 200 VETPRHVEVQVFGDRQGNVVYLYERDCSVQRRHQKIIEEAPAPGVSDEVRRSIGEAAVRA 259

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFREL 288
            +A+G  G    +F+ D      +++E+N +            A +       G    +L
Sbjct: 260 AKAVGYFGAGTVEFIMDSSQN-FYFMEMNTR----------LQAKHPITEMITGL---DL 305

Query: 289 LLWMVEDAS 297
           + W ++ A+
Sbjct: 306 VEWQLKIAA 314


>gi|154246689|ref|YP_001417647.1| carbamoyl-phosphate synthase, large subunit [Xanthobacter
           autotrophicus Py2]
 gi|154160774|gb|ABS67990.1| carbamoyl-phosphate synthase, large subunit [Xanthobacter
           autotrophicus Py2]
          Length = 1120

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPD---- 52
           SG     AL++ G++V  +         D D              V  ++   + D    
Sbjct: 29  SGTQAVKALKEEGYRVVLVNSNPATIMTDPDMADATYIEPITAEIVTKIIEKERGDRSKG 88

Query: 53  -LAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+   ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLKKMGTLEKYDVEMIGATAEAIDKAEDRELFREAMTKIGLST 148

Query: 108 CPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +   +   + L  +  P +I+P       G  +          + +    +  ++
Sbjct: 149 PTSRQIKTLSQALEALEVVGLPAIIRPSFTMGGTGGGIAYNKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPADGRLIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAARL 331


>gi|148977180|ref|ZP_01813807.1| acetyl-CoA carboxylase subunit A [Vibrionales bacterium SWAT-3]
 gi|145963462|gb|EDK28725.1| acetyl-CoA carboxylase subunit A [Vibrionales bacterium SWAT-3]
          Length = 447

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVEQSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                   +         I  P +IK   GG   G+ V++ +  +   +  +       +
Sbjct: 134 SDGPLNDDEAANKAHAKRIGYPVIIKASGGGGGRGMRVVRTEGELTEAIAMTRAEAKACF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|157871427|ref|XP_001684263.1| hypothetical protein [Leishmania major strain Friedlin]
 gi|68127331|emb|CAJ05644.1| conserved hypothetical protein [Leishmania major strain Friedlin]
          Length = 516

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 83/251 (33%), Gaps = 20/251 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRS 96
           R +  ++   K D+ +N   G   ED     V   LE  ++PYT +      +S   M+ 
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPYTGAISKYYEMSKPDMKL 120

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLL 155
                +        +            +  P +IK + G SS+G+    K      L   
Sbjct: 121 VAYYYNIATANYIVLAPGDDIESLCGDLQFPCIIKHISGYSSVGMDKSCKVYDMAHLVDR 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELK 205
            +         L+E++V+G E T     D++        P              +  +  
Sbjct: 181 AARFMAEYQFALVEEFVNGDEATILACSDSTQPEGVRVFPPVQVAFPEGEDFKHFQLKWA 240

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR-KVFWLEINV 264
                    +P + P  +   +        + +G  G  R D   D     KV +LEIN 
Sbjct: 241 SYEGMKWTQVPQEDP-AMQNMIDIARSAFKRMMGGVGYGRIDVRIDRQKNHKVVFLEINP 299

Query: 265 QPGMTPVSIFP 275
             G+    ++P
Sbjct: 300 NCGI----MYP 306


>gi|20906351|gb|AAM31524.1| Pyruvate carboxylase, subunit A [Methanosarcina mazei Go1]
          Length = 497

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/280 (15%), Positives = 83/280 (29%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGF--------------------KVSQIDVDRSVGLVLA-HLKPDLAFN- 56
                 A  + G                     +   I    S    L      ++A N 
Sbjct: 18  AIRVMRACRELGISTVAVCSEADKSALFAKYADEAYLIGPAPSSQSYLNMEAIIEVAKNT 77

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+       E   I +        A    K+R++ ++   GVPV P 
Sbjct: 78  GAEAIHPGYGFLSENPAFAKRCEEEGIIFIGPPSNVIAEMGSKIRARHLMMKAGVPVVPG 137

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      M+    I  P +IK   GG  +G+ V+   + +   L  +         
Sbjct: 138 TKDAVEDPEEAMEIAEKIGYPVLIKASAGGGGIGMKVVHSREELATSLSSTRQMAGSAFG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L  +   +         ++          P   +  ++ K
Sbjct: 198 DSSVFIEKYVEEPRHIEIQILADSHGNMVYLSDRECSIQRRHQKLIEEAPSPIMTPELRK 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A    +AIG       +FL+       ++LE+N +
Sbjct: 258 QMGEAAVKVAKAIGYVNAGTVEFLY--SKGNFYFLEVNTR 295


>gi|268634722|gb|ACZ16572.1| carbamoyl-phosphate synthase large subunit [uncultured bacterium]
          Length = 678

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V      S                  +  P +I+P       G  V              
Sbjct: 149 VTAPVAASGKKDLAAGVQLALDALEYVGLPAIIRPAFTMGGTGGGVAYNRDDYEFYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPMGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPEDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339


>gi|134098654|ref|YP_001104315.1| carbamoyl-phosphate synthase large subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|291003660|ref|ZP_06561633.1| carbamoyl-phosphate synthase large subunit [Saccharopolyspora
           erythraea NRRL 2338]
 gi|133911277|emb|CAM01390.1| carbamoyl-phosphate synthase large subunit [Saccharopolyspora
           erythraea NRRL 2338]
          Length = 1110

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +VS ++ +                       V  V+   +PD    
Sbjct: 29  SGTQACRVLREEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVEKVIDAERPDALLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + I A     D+ R K +V   G  V  S +
Sbjct: 89  TLGGQTALNTAMALHERGVLEKYGVELIGADIDAIERGEDRQRFKDIVRGIGGEVPESAV 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                         S P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CRSMEEVRSFVAEHSLPVVIRPSFTMGGLGSGMAHTHEELERMASFGLTESPVHEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +        
Sbjct: 209 SVLGWKEYELELMRDHADNVVVICSIENIDPMGVHTGDSVTVAPSMTLTDREYQHMRNVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREVGVDTGGCNIQFAIHPETGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|23466088|ref|NP_696691.1| JadJ [Bifidobacterium longum NCC2705]
 gi|227546422|ref|ZP_03976471.1| biotin carboxylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|312133815|ref|YP_004001154.1| acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|322691921|ref|YP_004221491.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
 gi|23326818|gb|AAN25327.1| JadJ [Bifidobacterium longum NCC2705]
 gi|227213079|gb|EEI80958.1| biotin carboxylase [Bifidobacterium longum subsp. infantis ATCC
           55813]
 gi|290769670|gb|ADD61449.1| putative protein [uncultured organism]
 gi|291516507|emb|CBK70123.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Bifidobacterium
           longum subsp. longum F8]
 gi|311773102|gb|ADQ02590.1| Acetyl/propionyl-CoA carboxylase alpha subunit [Bifidobacterium
           longum subsp. longum BBMN68]
 gi|320456777|dbj|BAJ67399.1| propionyl-CoA carboxylase alpha subunit [Bifidobacterium longum
           subsp. longum JCM 1217]
          Length = 654

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/147 (18%), Positives = 54/147 (36%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H    P ++K   GG   GI V+  D+ +    +   +   GD  L E +++      
Sbjct: 150 FAHTHGYPIMMKRTDGGGGHGITVVHDDEELRRFYMNHDALQGGD--LKEYFIEKFVDKA 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +   S   +             L+  +       PA     +I   ++  +      +
Sbjct: 208 RHVETQSGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLSEEIISTLEEYSRRLFTTV 267

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G+   +F+  P + KV++LE+N +
Sbjct: 268 GYVGLGTCEFMVTP-NGKVYFLEVNPR 293


>gi|83941313|ref|ZP_00953775.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           EE-36]
 gi|83847133|gb|EAP85008.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           EE-36]
          Length = 1119

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V      S                  +  P +I+P       G  V              
Sbjct: 149 VTAPVAASGKKDLAAGVQLALDALEYVGLPAIIRPAFTMGGTGGGVAYNRDDYEFYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPMGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPEDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 108/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 586 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMVNCNPETVSTDYDTSD 638

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    +  +    +L         HG            +   L+   IP   +      
Sbjct: 639 RLYFEPVTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKIAQALQEAGIPILGTTPDMID 698

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V S G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 699 LAEDRERFQQLVQSLGLKQPHNGIAHSDAEALEIAADIGFPLVIRPSYVLGGRAMEIVRD 758

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   +  +   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 759 QASLERYIRDAVVVSGKSPVLLDHYLSGAVELDVDALSDGADVHVAGIMQHIEEAG---V 815

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I  EV++       A+   G+    F       +++ +E+N +
Sbjct: 816 HSGDSACSLPPYSLSREIIAEVEKQTKALALALNVVGLMNIQFAV--KDGEIYLIEVNPR 873

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 874 ASRT----VPFVAKAT 885


>gi|83854790|ref|ZP_00948320.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83842633|gb|EAP81800.1| carbamoyl-phosphate synthase large subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 1119

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V      S                  +  P +I+P       G  V              
Sbjct: 149 VTAPVAASGKKDLAAGVQLALDALEYVGLPAIIRPAFTMGGTGGGVAYNRDDYEFYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPMGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPEDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 108/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 586 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMVNCNPETVSTDYDTSD 638

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    +  +    +L         HG            +   L+   IP   +      
Sbjct: 639 RLYFEPVTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKIAQALQEAGIPILGTTPDMID 698

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V S G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 699 LAEDRERFQQLVQSLGLKQPHNGIAHSDAEALEIAADIGFPLVIRPSYVLGGRAMEIVRD 758

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   +  +   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 759 QASLERYIRDAVVVSGKSPVLLDHYLSGAVELDVDALSDGTDVHVAGIMQHIEEAG---V 815

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I  EV++       A+   G+    F       +++ +E+N +
Sbjct: 816 HSGDSACSLPPYSLSREIIAEVEKQTKALALALNVVGLMNIQFAV--KDGEIYLIEVNPR 873

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 874 ASRT----VPFVAKAT 885


>gi|296274303|ref|YP_003656934.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Arcobacter nitrofigilis DSM 7299]
 gi|296098477|gb|ADG94427.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Arcobacter nitrofigilis DSM 7299]
          Length = 483

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 97/279 (34%), Gaps = 33/279 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ + L L   + D      +G   E        +   I +        AL  DKM 
Sbjct: 63  LNIDKIISLAL-KAQCDAIHPG-YGFLSESAEFAEACDKAGIIFVGPKAEHIALFGDKMA 120

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK  +   GVPV       I+  +        I  P +IK   GG   G+ ++K+++   
Sbjct: 121 SKVAMKKIGVPVLEGTSTPIVDIKEGEKISREIGFPIIIKAAFGGGGRGMRIVKEEKDFK 180

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                        +  GD  + +   +   +   V+ D   +V  +            K 
Sbjct: 181 AMFEAATAEAKKFFGKGDAFIEKYVENPRHIEVQVIADKYGNVLHLGERDCSIQRRHQKV 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-- 264
             +  +  L   +  ++Y+   +  F     +G   +   +FL D     ++++E+N   
Sbjct: 241 IEIAPSPRLNENVRRELYRVSTKAMFK----LGYESVGTIEFLVDAQDN-IYFIEMNTRV 295

Query: 265 ---QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               P +T +            +  +++  M+E A   +
Sbjct: 296 QVEHP-VTEL-----------ITGVDIIQRMIEIAEGDK 322


>gi|295394635|ref|ZP_06804854.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
 gi|294972528|gb|EFG48384.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Brevibacterium mcbrellneri ATCC 49030]
          Length = 740

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 76/274 (27%), Gaps = 28/274 (10%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP------DLAFNVLHGN--FGEDGLV 68
            +   +   + G +   +  D D  +  V    K         A   L G          
Sbjct: 45  ARRVFATCREQGIETVAVFSDPDEGLPFVAEADKAVRLPGKSAAETYLDGPAIIEAAHRT 104

Query: 69  QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ------- 121
            A        +       +   MD   +    S   +    S + ++  MD+        
Sbjct: 105 GADAIHPGYGFLSENAEFARAVMDAGLTWIGPSPEAIESMGSKVRSKELMDAAGVPILTN 164

Query: 122 ------HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL----DLLQSSSWNHGDQLLIEQY 171
                      P ++K   GG   G+ V     ++         ++ S      +  E+Y
Sbjct: 165 MEPDSITEADLPVLVKASAGGGGRGMRVADSMDALAETIESAKREAQSAFGDSTVFCERY 224

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           +         +             +        +     +   L  +   ++   + + A
Sbjct: 225 IPAGHHVEVQVVGDMHGNVWAVGERECSIQRRHQKVVEEAPAPLVERHGQELRDRLFQAA 284

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A   IG  G    +FL D  + + F+LE+N +
Sbjct: 285 KDAATRIGYVGAGTVEFLAD-SNGEFFFLEMNTR 317


>gi|330923773|ref|XP_003300369.1| hypothetical protein PTT_11603 [Pyrenophora teres f. teres 0-1]
 gi|311325526|gb|EFQ91540.1| hypothetical protein PTT_11603 [Pyrenophora teres f. teres 0-1]
          Length = 509

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A      K  SK +++  GVP  P    +    
Sbjct: 110 YGFLSENPTFARKCTDAGLTFIGPPWQAIESMGSKSESKDIMTKAGVPCIPGYHGSNQDP 169

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K +KGG   G+ ++  +      L  + S            V+ 
Sbjct: 170 QYLKEQAASIGYPVLLKAVKGGGGKGMRIVNTEAEFFDQLESAKSEARNSFGDEIMLVEK 229

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
              T   +                     ++          PA    + I +++   A  
Sbjct: 230 YITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLDEAIRQDIWEKARQ 289

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A  A+G  G    +F+FD  + + F++E+N +
Sbjct: 290 AALAVGYEGAGTVEFIFDNDTGEFFFMEMNTR 321


>gi|218264997|ref|ZP_03478621.1| hypothetical protein PRABACTJOHN_04331 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221665|gb|EEC94315.1| hypothetical protein PRABACTJOHN_04331 [Parabacteroides johnsonii
           DSM 18315]
          Length = 528

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/235 (16%), Positives = 80/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++ +  V    K D      +G   E+       +   I +            DK+ 
Sbjct: 84  LDIEK-IIWVAKQHKVDAIHPG-YGFLSENADFARRCKEEGIIFIGPSAETMEAMGDKIS 141

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++ + + GVPV P        +     I      P ++K   GG   G+ +I  ++ + 
Sbjct: 142 ARKRMIAAGVPVVPGTQQPLQDVGEARRICREIGFPVMLKASMGGGGKGMRLIHCEEEVE 201

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L      V         ++  +   
Sbjct: 202 EAYNAARSESLSSFGDDTVYLEKFVEGPHHIEFQILGDNHGNVIHLCERECSVQRRNQKI 261

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   I  D+ +E+   A  A +A+   G    +FL D      ++LE+N +
Sbjct: 262 VEESPSPFITPDLRQEMGEKAVAAAKAVDYSGAGTIEFLVDKHRN-FYFLEMNTR 315


>gi|197286033|ref|YP_002151905.1| phosphoribosylglycinamide formyltransferase [Proteus mirabilis
           HI4320]
 gi|254788775|sp|B4F1Q4|PURT_PROMH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|194683520|emb|CAR44347.1| phosphoribosylglycinamide formyltransferase [Proteus mirabilis
           HI4320]
          Length = 399

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 76/269 (28%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                       ++  ++   KPD     +
Sbjct: 24  GKEVIIECQRLGIETIAVDRYANAPAMHVAHRHYVVNMLDSEALKQIITQEKPDFLVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATSLLVELENNGQKVVPCARAVKLTMDREGIRRLAAETLHLLT-SPYQFVDDEAAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  VI+ +Q +      S      G   +I + +   + 
Sbjct: 143 KAAVEIGFPCIVKPVMSSSGKGQSVIRSEQDLTSAWTYSQEGGRAGQGRVIVEKMIPFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P K+      + Q +A    + 
Sbjct: 203 EITLLTIRAIDGIHFCEPIGHRQE-----KGDYRASWQPQKMSDIALAKAQHIASKVVEN 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +VF+ E++ +P
Sbjct: 258 LGGYGLFGVELFI--QGDEVFFNEVSPRP 284


>gi|78357124|ref|YP_388573.1| pyruvate carboxylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78219529|gb|ABB38878.1| pyruvate carboxylase, putative [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
          Length = 1238

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/254 (16%), Positives = 88/254 (34%), Gaps = 10/254 (3%)

Query: 19  GKACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + A  L   G      +D+DR   + LA  +  +A +   G   ED    +      +
Sbjct: 55  AASAAQELLLLGSDPRAYLDIDR--IIRLAKQRGIIAIHPGWGFSSEDPRFPSRCAEAGL 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLK 134
            Y  S   A  L  +K++ +++    G+PV P     +           I  P ++K   
Sbjct: 113 LYIGSTAEAMNLLGNKVQVRRLAKQLGIPVVPGSEGAVDVPTGRKIAEEIGFPVMLKAEG 172

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   GI +IK    +    +++S+           YV+    +   +    +      V
Sbjct: 173 GGGGRGIFLIKSQDELEDAFVKASTMAQASFGNPRLYVEKYLPSVRHIEIQVIADMHGNV 232

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D     ++ +      + P+       ++   ++  +    Q +G   +   +FL  
Sbjct: 233 FAFDERDCTVQRNHQKLIEITPSPWKGITPELRARLKDYSRQLVQEVGYYSLCTVEFLVT 292

Query: 252 PLSRKVFWLEINVQ 265
                 + +E+N +
Sbjct: 293 -DDGTPYLIEVNTR 305


>gi|332520861|ref|ZP_08397321.1| carbamoyl-phosphate synthase, large subunit [Lacinutrix algicola
           5H-3-7-4]
 gi|332043391|gb|EGI79587.1| carbamoyl-phosphate synthase, large subunit [Lacinutrix algicola
           5H-3-7-4]
          Length = 950

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/260 (14%), Positives = 84/260 (32%), Gaps = 13/260 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIKHEKPEGVIVQLGGQTALKLAEKLERYGVKILGTSFEALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +  +         P                ++  P +++P       G+ ++  
Sbjct: 680 LAEDRGRFSTLLKELEIPYPEFDIATTADEASAIADVLDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   ++   S   G+QLL++ Y+DG IE     + D         +   +       
Sbjct: 740 KEELEKHVVDLLSRMPGNQLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +++ + P  +   + ++++        A+   G+    F       KV+ +E N +
Sbjct: 800 ---DSNSLLPPFNLGDLVMQQIKDHTKKIALALNTVGLINIQFAV--KDDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAYAGYSF 285
              T     P +A   G  +
Sbjct: 855 ASRT----VPFIAKAYGEPY 870



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 92/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGTQALRSLREDGIETILINSNPATIMTDPSMADHVYLLPLTTKSLIEILKKHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      +  ++      I A  ++ D+ + ++++   G+P+    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFDVEIIGVNIDAINITEDREKFRELMLDIGIPMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P +I+        G   + K++     L +    +   +++I+
Sbjct: 149 TATSYLKGKEIAQEFGFPLIIRASFTLGGAGASFVYKEEDFDELLTRGLEISPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   S D   I     +     +      +             K    
Sbjct: 209 KALIGWKEYELELLRDSNDNVVIICAIENMDPIGIHTGDSITVAPAMTLSDKTYQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRNIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKV 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328


>gi|323498780|ref|ZP_08103766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           sinaloensis DSM 21326]
 gi|323316142|gb|EGA69167.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           sinaloensis DSM 21326]
          Length = 447

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDDDEHANKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELIEAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|227821676|ref|YP_002825646.1| acetyl-CoA carboxylase biotin carboxylase subunit [Sinorhizobium
           fredii NGR234]
 gi|227340675|gb|ACP24893.1| acetyl-CoA carboxylase, biotin carboxylase protein [Sinorhizobium
           fredii NGR234]
          Length = 447

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/220 (15%), Positives = 76/220 (34%), Gaps = 11/220 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILEAHGITFIGPTAEHIRLMGDKITAKKTAEELGIPVVPGS 134

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
              +     +     I  P +IK   GG   G+ V + ++ +   +  + +      G+ 
Sbjct: 135 DGEVKPENALKVAREIGFPVLIKATAGGGGRGMKVARTEEDLEHAVATARAEAAAAFGND 194

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +  +   G      +      +    A+   +      +             + ++   
Sbjct: 195 AVYMEKFLGKPRHIEIQVIGDGEG--NAIHLGERDCSLQRRHQKVWEEANSPALNVEQRM 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ ++   A + +  RG    +FL+     + +++E+N +
Sbjct: 253 KIGQVCADAMKKMKYRGAGTIEFLY--EDGEFYFIEMNTR 290


>gi|209695180|ref|YP_002263109.1| phosphoribosylglycinamide formyltransferase 2 [Aliivibrio
           salmonicida LFI1238]
 gi|208009132|emb|CAQ79371.1| phosphoribosylglycinamide formyltransferase 2 [Aliivibrio
           salmonicida LFI1238]
          Length = 391

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 85/302 (28%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  V+   KPD     +
Sbjct: 22  GKEVAIECQRLGLEVIAVDRYLNAPAMQVAHRSYAIDMLDADALQEVIEKEKPDYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +          +      +
Sbjct: 82  EAIATDKLVELEKRGLNVVPTANATKLTMNREGIRRLAAEELKLPT-SPYRFVDSYEELV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P VIKP+   S  G  VIK +      +  S  +           V      
Sbjct: 141 DAVKFVGMPCVIKPVMSSSGKGQSVIKTEDD----IKTSWDYAQDGGRTGAGRVIVEGFV 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 + L +  +            +          P  +     ++ Q  A     A+
Sbjct: 197 DFDYEISLLTIRAVDGIHFCDPIGHRQEDGDYRESWQPQVMTEAALQQAQDAAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAY-AGYSFRELL 289
           G  G+   +         +++ E++ +P  T         +S F        G     ++
Sbjct: 257 GGYGLFGVELFI--KGDDIYFNEVSPRPHDTGLVTLISQEMSEFALHVRAFTGMPINNIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|156146806|gb|ABU53415.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EKKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|159037472|ref|YP_001536725.1| carbamoyl-phosphate synthase, large subunit [Salinispora arenicola
           CNS-205]
 gi|157916307|gb|ABV97734.1| carbamoyl-phosphate synthase, large subunit [Salinispora arenicola
           CNS-205]
          Length = 1115

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 92/311 (29%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRNEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVV-----------S 101
            L G    +         +LE   +    + I A     D+   K +V            
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIDAIRRGEDRQLFKDIVAKAGVRIGVEDP 148

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  VP            D+   +  P VI+P      LG  +   D  +        + +
Sbjct: 149 AALVPRSRVCHSMDEVRDTIAELGLPAVIRPSFTMGGLGSGMAHTDADLERIAGAGLAAS 208

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVTVAPAMTLTDR 268

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +       +  +     G     F  +P+  ++  +E+N  P ++  S     +   
Sbjct: 269 EYQRMRDLGIAVLREVGVDTGGCNIQFAVNPVDGRIVVIEMN--PRVSRSS--ALASKAT 324

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 325 GFPIAKIAARL 335


>gi|86147888|ref|ZP_01066193.1| acetyl-CoA carboxylase [Vibrio sp. MED222]
 gi|218710861|ref|YP_002418482.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           splendidus LGP32]
 gi|85834315|gb|EAQ52468.1| acetyl-CoA carboxylase [Vibrio sp. MED222]
 gi|218323880|emb|CAV20241.1| Biotin carboxylase [Vibrio splendidus LGP32]
          Length = 447

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITSMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                   +         I  P +IK   GG   G+ V++ ++ +   +  +       +
Sbjct: 134 SDGPLDDDEAKNKAHAKRIGFPVIIKASGGGGGRGMRVVRTEKELTEAIAMTRAEAKACF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGDRCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317177706|dbj|BAJ55495.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           F16]
          Length = 1085

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 90/300 (30%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKFLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIEKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPRGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDNKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVIEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/267 (11%), Positives = 88/267 (32%), Gaps = 13/267 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +  +S   ++     D    ++H        +   L  ++ P   +    
Sbjct: 613 DTLYFEPIHFECVKS---IIQREHVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKV 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             ++ D+ +    +    +    + +           ++I  P +++P        + ++
Sbjct: 668 IDIAEDREKFSLFLKELDIKQPENGMAKSVDEAYSIANVIGFPIIVRPSYVLGGQHMQIL 727

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +  + +   L   +                +E    +  DA  D  E+ +     +  E 
Sbjct: 728 ENIEELHHYLESVTHALEVSSKNPLLIDKFLEKAVELDVDAICDKKEVYIAGILQHIEEA 787

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
              S +S   +P+ +  +I  E++R++      +G  G+    F        ++ +E+N 
Sbjct: 788 GIHSGDSACFIPSTLRAEILDEIERVSAKIALHLGVVGLLNIQFAV--HDNTLYLIEVNP 845

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G    ++   
Sbjct: 846 RASRT----VPFLSKALGVPLAKVATR 868


>gi|156146822|gb|ABU53423.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISEDVVAIMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|157873596|ref|XP_001685305.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major]
 gi|68128376|emb|CAJ08598.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania major strain Friedlin]
          Length = 687

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
            + +  P +IK + GG   G+ ++++ +     L  +     + +     +L        
Sbjct: 159 ANRVGFPILIKAVSGGGGKGMKIVERPEDFAFMLESAKREAANFFKDDRVILERYVKRPR 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            + C +  D                    +             + +++ + +  +A  A 
Sbjct: 219 HIECQIFFDKHGRGVFFFERDCSVQ----RRYQKVLEEAPAPHLSMEMRQRIGEVALQAA 274

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +F+FD  +   +++E+N +
Sbjct: 275 KAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|289547938|ref|YP_003472926.1| MGS domain protein [Thermocrinis albus DSM 14484]
 gi|289181555|gb|ADC88799.1| MGS domain protein [Thermocrinis albus DSM 14484]
          Length = 532

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 94/263 (35%), Gaps = 13/263 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +    +V  V+   KPD       G       +      + I  T    + 
Sbjct: 56  DRLYFEPVVL---ENVLEVIRREKPDGVLIQFGGQTPLKLSLPLRDAGVTILGTPPESID 112

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   +  R          P   ++      +     I  P +++P        + +I  
Sbjct: 113 IAEDRELFRRLIQKLGLRQPPSEAVRSKEEAIRVAEAIGYPVLVRPSYVLGGRAMRIIYD 172

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   L ++   ++   +LI+ Y  D +E+    +GD    +    +   +       
Sbjct: 173 REELVTYLEEAVEVSYQRPILIDAYLSDSVEVDVDAIGDGEDFLVGAVMEHIEEAG---V 229

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P D+ +E++R +    +++G  G+    F       +V+ LE+N +
Sbjct: 230 HSGDSAASIPPYTLPSDVVEEIKRQSKEIARSLGVVGLINLQFAV--KDGEVYVLEVNPR 287

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
              T     P ++   GY   +L
Sbjct: 288 ASRT----VPFVSKAIGYPLAKL 306


>gi|169634299|ref|YP_001708035.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii SDF]
 gi|169153091|emb|CAP02161.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: Biotin carboxylase ; Biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii]
          Length = 646

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +     G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKTCAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|152980979|ref|YP_001353684.1| phosphoribosylglycinamide formyltransferase 2 [Janthinobacterium
           sp. Marseille]
 gi|172049088|sp|A6SZI7|PURT_JANMA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|151281056|gb|ABR89466.1| phosphoribosylglycinamide formyltransferase 2 [Janthinobacterium
           sp. Marseille]
          Length = 406

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/283 (10%), Positives = 76/283 (26%), Gaps = 25/283 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    +L+  G +V  +D                +D +    +  ++   KPDL    +
Sbjct: 30  GKEVIISLQRLGVEVIAVDRYSNAPGHQVAHRSYVIDMTDEVALAELINQEKPDLIVPEI 89

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +       + +  T      +       R       C           +   
Sbjct: 90  EAIATAKLVELENAGTIRVIPTARAAWLTMDREGIRRLAAEELGCATSPYRFADNLKELQ 149

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
                I  P ++KP+   S  G   +     +      +++        +I +     E 
Sbjct: 150 AGCAEIGFPCIVKPVMSSSGKGQSKLSSSADVAAAWDCAAAGGRVDSGRVIVEGFIDFEY 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++                ++ +        P ++     ++   +A      
Sbjct: 210 EITLLTVRAIGADGEVHTHFCEPIGHVQVNGDYVESWQPQRMHPGALQKAHEIAKRVTDN 269

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +G  G+   +         V++ E++ +P      +    +  
Sbjct: 270 LGGLGLFGVELFV--KDDMVWFSEVSPRP--HDTGMVTMASQE 308


>gi|145594399|ref|YP_001158696.1| carbamoyl-phosphate synthase, large subunit [Salinispora tropica
           CNB-440]
 gi|145303736|gb|ABP54318.1| carbamoyl-phosphate synthase large subunit [Salinispora tropica
           CNB-440]
          Length = 1115

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 90/311 (28%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVV-----------S 101
            L G    +         +LE   +    + I A     D+   K +V            
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIDAIRRGEDRQLFKDIVAKAGVRIGVEDP 148

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  VP            ++   +  P VI+P      LG  +   D  +        + +
Sbjct: 149 ATLVPRSRVCHSMDEVRETVAELGLPAVIRPSFTMGGLGSGMAHTDADLERIAGAGLAAS 208

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVTVAPAMTLTDR 268

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +       +  +     G     F  +P   ++  +E+N  P ++  S     +   
Sbjct: 269 EYQRLRDLGIAVLREVGVDTGGCNIQFAVNPDDGRIVVIEMN--PRVSRSS--ALASKAT 324

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 325 GFPIAKIAARL 335


>gi|56480299|ref|NP_709051.2| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 2a str. 301]
 gi|56383850|gb|AAN44758.2| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2a str. 301]
          Length = 449

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSTDRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGCRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|319408519|emb|CBI82172.1| Biotin carboxylase [Bartonella schoenbuchensis R1]
          Length = 448

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 100/285 (35%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKPD 52
                 A ++ G K   I    D D                       ++  +++  +  
Sbjct: 14  ALRILRACKELGIKTVAIHSTADADAMHVRLSDESVCIGPPPSRDSYLNIHQIISACEIT 73

Query: 53  LAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
            A + +H   G   E+     ILE  EI +         +  DK+ +K+   + G+P+ P
Sbjct: 74  GA-DAIHPGYGFLSENAKFADILEAHEITFIGPTSAHIRIMGDKIEAKKTAKNLGIPIVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +   +  +     I  P +IK   GG   G+ V++ ++ +      + S     +
Sbjct: 133 GSDGAVTDEKEALRIIDEIGYPVIIKASAGGGGRGMKVVRSEKELSTAFNTARSEARAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N     + +       +   V+GD + +   +            ++  +      PA   
Sbjct: 193 NDDAVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSLQR---RHQKVWEEAYSPALNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           L+  K    +A    + +G RG    +FL+   + + +++E+N +
Sbjct: 250 LERKKIGSIVANACAK-LGYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|169794666|ref|YP_001712459.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii AYE]
 gi|213157962|ref|YP_002320760.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acinetobacter
           baumannii AB0057]
 gi|215482256|ref|YP_002324438.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           baumannii AB307-0294]
 gi|301345857|ref|ZP_07226598.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB056]
 gi|301511360|ref|ZP_07236597.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB058]
 gi|301596588|ref|ZP_07241596.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii AB059]
 gi|332851549|ref|ZP_08433526.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332867748|ref|ZP_08437820.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
 gi|169147593|emb|CAM85454.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: Biotin carboxylase ; Biotin carboxyl carrier
           protein (BCCP)] [Acinetobacter baumannii AYE]
 gi|213057122|gb|ACJ42024.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Acinetobacter
           baumannii AB0057]
 gi|213987001|gb|ACJ57300.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           baumannii AB307-0294]
 gi|332729894|gb|EGJ61226.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332733754|gb|EGJ64906.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
          Length = 646

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +     G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKTCAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|229086511|ref|ZP_04218683.1| Pyruvate carboxylase [Bacillus cereus Rock3-44]
 gi|228696828|gb|EEL49641.1| Pyruvate carboxylase [Bacillus cereus Rock3-44]
          Length = 1148

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLANIPVIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 GDELQESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQR 239

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +  +  LP     ++   +   A    + +        +FL        +++E
Sbjct: 240 RHQKVVEIAPSVSLPD----ELRHRICEAAVQLTKNVNYLNAGTVEFLV--KGNDFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|156146860|gb|ABU53442.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146820|gb|ABU53422.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|1814250|gb|AAB41855.1| D-Alanine:D-Alanine ligase [Streptococcus oralis]
          Length = 197

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 57  EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 114

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 115 LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 174

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 175 GGLGLSRCDFFYTDK-GEIFLNE 196


>gi|18976802|ref|NP_578159.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus furiosus
           DSM 3638]
 gi|74580812|sp|Q8U3M7|PURT_PYRFU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|18892397|gb|AAL80554.1| phosphoribosylglycinamide formyltransferase 2 [Pyrococcus furiosus
           DSM 3638]
          Length = 429

 Score = 54.5 bits (129), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/287 (13%), Positives = 81/287 (28%), Gaps = 26/287 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D+     V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGNMMDKDFLWSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFEFEKEGYFVVPNAKATWIAMHRERLRETLVKEAKVPT-SRYMYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIEL 177
           ++   I  P   K +   S  G   ++  + IP    ++ +   G  + +I +     ++
Sbjct: 147 EACEKIGYPCHTKAIMSSSGKGSYFVRGPEDIPKAWEEAKTKARGSAEKIIVEEHIDFDV 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +     D     V          +          PA+I     +EV R+A      
Sbjct: 207 EITELAVRHFDENGEIVTTFPKPVGHYQIDGDYHASWQPAEISEKAEREVYRIAKRITDV 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 267 LGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPPGFS 309


>gi|262369311|ref|ZP_06062639.1| urea carboxylase [Acinetobacter johnsonii SH046]
 gi|262315379|gb|EEY96418.1| urea carboxylase [Acinetobacter johnsonii SH046]
          Length = 1200

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 59/185 (31%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+     +Q++                    +++       
Sbjct: 147 ATEIGYPIMLKSTAGGGGIGLTRCDNEQALVEAYESVKRLGAQFFKDSGVFLERFIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    +   +++ + A    +++ 
Sbjct: 207 HVEVQIFGDGQGQVVALGERDCSLQRRNQKVVEETPAAHLPEATRQKLHQAAVELGKSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P         EM    G    +L+  M++
Sbjct: 267 YRSAGTVEFIYDAARDEFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLK 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 VAAGD 319


>gi|156146872|gb|ABU53448.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|59712094|ref|YP_204870.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           ES114]
 gi|81310935|sp|Q5E4R4|PURT_VIBF1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|59480195|gb|AAW85982.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio fischeri
           ES114]
          Length = 391

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 78/268 (29%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  GF+V  +D                +D     ++  V+   +PD     +
Sbjct: 22  GKEVAIECQRLGFEVIAVDRYLNAPAMQVAHRSYAIDMLDANALEEVINKEQPDFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +          +      +
Sbjct: 82  EAIATDKLVELEKQGLNVVPTANATKLTMNREGIRRLAAEELQLPT-SPYRFVDSYEELV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P VIKP+   S  G  VIK +      +  S  +           V      
Sbjct: 141 EAVKFVGMPCVIKPVMSSSGKGQSVIKTEAD----IRTSWDYAQDGGRSGAGRVIVEGFV 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                 + L V  +            +          P  +     K+ Q  A     A+
Sbjct: 197 DFDYEISLLTVRAVDGVHFCAPIGHRQEDGDYRESWQPQVMTEAALKQAQNAAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +         +++ E++ +P
Sbjct: 257 GGYGLFGVELFI--KGDNIYFNEVSPRP 282


>gi|30250344|ref|NP_842414.1| biotin / lipoyl attachment:carbamoyl-phosphate synthase:DUF183
           [Nitrosomonas europaea ATCC 19718]
 gi|30181139|emb|CAD86332.1| Biotin / Lipoyl attachment:Carbamoyl-phosphate synthase:DUF183
           [Nitrosomonas europaea ATCC 19718]
          Length = 1211

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/295 (13%), Positives = 84/295 (28%), Gaps = 40/295 (13%)

Query: 23  ASALEDAGFKVSQIDVDR-----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           A AL         +D D            ++L+ D    V H    +             
Sbjct: 35  ADALSR-----HVLDADDSICIGDGLASESYLRADKILEVAHRTGAQAIHPGYGFLSENA 89

Query: 78  PYTHSG--------------ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
            +                  I    L        Q + +  +P    +       +  H 
Sbjct: 90  SFAEQCAAEGICFLGPTPEQIRTFGLKHTARALAQQLDAPMLPGTGLLEHLETACEEAHR 149

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ + +  Q +        +    +      +++        + 
Sbjct: 150 IGYPVMLKSTAGGGGIGMRLCRNRQELIDAYESVKNLAQSNFSNAGLFLEKYIDQARHIE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                     V   +     ++  +       PA          +Q  A    +++  R 
Sbjct: 210 VQIFGDGRGKVIALEERDCSMQRRNQKVIEETPAPGLSPATRNALQETAIRLGESVQYRS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               ++++DP   + ++LE+N +     G+T +          G    +L+ WMV
Sbjct: 270 AGTVEYVYDPSVDRFYFLEVNTRLQVEHGVTEM--------VTGI---DLVEWMV 313


>gi|332707489|ref|ZP_08427535.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
 gi|332353747|gb|EGJ33241.1| hypothetical protein LYNGBM3L_39910 [Lyngbya majuscula 3L]
          Length = 135

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/90 (31%), Positives = 41/90 (45%), Gaps = 6/90 (6%)

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                   + K VQ +A   HQA+GCR  S  DF  DP   + ++LE  +    +P S+ 
Sbjct: 46  WMLDPRDPVTKPVQEVAKRCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYCSFSPKSVI 104

Query: 275 PEMAAYAGYSFRELL-----LWMVEDASCL 299
             MA  +G S  ELL       ++  A+C 
Sbjct: 105 ASMAKASGISVNELLMIAIDETLINKAACR 134


>gi|315647358|ref|ZP_07900471.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus vortex
           V453]
 gi|315277560|gb|EFU40889.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus vortex
           V453]
          Length = 386

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/313 (14%), Positives = 87/313 (27%), Gaps = 47/313 (15%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                +D      +  ++   KPDL    +
Sbjct: 16  GKEVVIEAQRLGVETIAVDRYADAPAMHVAHRSYVIDMLDGDKLREIIEQEKPDLIVPEI 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 + +         IP   +  L       +  + + +                 +
Sbjct: 76  EALATSELVKLEEEGYRVIPTARAAKLTMDREGIRRLASEKLGLPT-AGYRFADTYEEFV 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P VIKPL   S  G  V +    I      +            +  +G  + 
Sbjct: 135 QAVREMGFPCVIKPLMSSSGKGQSVCRSVDEIASCWNIAM--------EGGRVQNGRVI- 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V      +Y                  P  +  +  +E + +A  
Sbjct: 186 IEEFITFQSEITLLTVRSVSGTNYCAPIGHIQESGDYIESWQPHNMSEEQIEEAKGIAKA 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYS 284
               +G  G+   +        KV++ E++ +P  T         +S F        GY 
Sbjct: 246 ITDELGGFGLFGVELFLTE--NKVYFSEVSPRPHDTGLVTLVTQNLSEFALHVRAILGYP 303

Query: 285 FRELLLWMVEDAS 297
             E + W+   AS
Sbjct: 304 IPE-IEWITPGAS 315


>gi|156146832|gb|ABU53428.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146834|gb|ABU53429.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146836|gb|ABU53430.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYEVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|320325541|gb|EFW81603.1| hypothetical protein PsgB076_05920 [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 1302

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 64/184 (34%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  + +             +      +++       
Sbjct: 147 ARDIGYPVMLKSTAGGGGIGMRVCRSAEELADSFEAVKRLGQNNFSDAGVFIEKYIQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA    D +  E+   A    +A+ 
Sbjct: 207 HLEVQVFGDGQGEVLALGVRDCSVQRRNQKVLEETPAPNLPDGMADELCAAAIKLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ WMV+ 
Sbjct: 267 YRSAGTLEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSWMVQL 315

Query: 296 ASCL 299
           A+  
Sbjct: 316 AAGD 319


>gi|261328410|emb|CBH11387.1| glutamine hydrolysing (not ammonia-dependent) carbomoyl phosphate
            synthase, putative [Trypanosoma brucei gambiense DAL972]
          Length = 1624

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 37/319 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 927  AVLGCGVYRIGSSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFE 983

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   K       L G   ++  ++     L I  T    +  A   +K  
Sbjct: 984  EVSEETVLDILLKEKISGVIISLGGQIVQNMALRLKEHGLPILGTDPVNVDKAEDRNKFS 1043

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P        +        +  P +++P    S   + VI   + I   L 
Sbjct: 1044 KMCDQLGVPQPEWILSTSVQDVHAFCQRVGFPTLVRPSYVLSGSAMAVISSPEDIDRYLT 1103

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +G           +     +     +       +S   +  + 
Sbjct: 1104 KASLVSGTHPVVVSKYYEGAMEYDV--DIVAHHGRVLCYAICEHLENAGVHSGDATMFLP 1161

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     ++ K +   A      +   G     FL      ++  +E N++   +  S  P
Sbjct: 1162 PQHTKKEVMKRIYEAATQIAGELDVVGPMNVQFLLT-KDEQLRVIEANIR---SSRS-VP 1216

Query: 276  EMAAYAGYSFRE-LLLWMV 293
             ++   G SF   ++  ++
Sbjct: 1217 FVSKTLGISFPAVMVSALL 1235



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL + G K   ++ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKALREEGVKSILVNPNIATVQTDDEMADQVYFVPVTPEAVERVIEKERPDGIM- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + +L  +   +  +L +A+S   +   + +    +           
Sbjct: 453 LGWGGQTALNCGLQLDKLGVLKKYNVQVLGTAISTITVTEDRELFRNALLQINEPVAKSV 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  ++  ++ +   +  + +     Q+L+E
Sbjct: 513 AVTSVAEALKAAADIGFPMMVRAAFCLGGQGSGIVNSEEELSNKVEVALTVAP--QVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  + Y  ++ 
Sbjct: 571 ESVAGW-KEIEYEIVRDIHDNCITVCNMENFDPMGVHTGESIVVAPSQTLTNEEYHMLRT 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    + +G  G     +  +P SR+   +E+N +  ++  S     +   GY    + 
Sbjct: 630 AAIKIIRHLGVVGECNIQYGLEPHSRRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|72389510|ref|XP_845050.1| glutamine hydrolysing (not ammonia-dependent) carbomoyl phosphate
            synthase [Trypanosoma brucei
 gi|62176733|gb|AAX70833.1| glutamine hydrolysing (not ammonia-dependent) carbomoyl phosphate
            synthase, putative [Trypanosoma brucei]
 gi|70801584|gb|AAZ11491.1| glutamine hydrolysing (not ammonia-dependent) carbomoyl phosphate
            synthase, putative [Trypanosoma brucei brucei strain
            927/4 GUTat10.1]
          Length = 1833

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 97/319 (30%), Gaps = 37/319 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 927  AVLGCGVYRIGSSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFE 983

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   K       L G   ++  ++     L I  T    +  A   +K  
Sbjct: 984  EVSEETVLDILLKEKISGVIISLGGQIVQNMALRLKEHGLPILGTDPVNVDKAEDRNKFS 1043

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P        +        +  P +++P    S   + VI   + I   L 
Sbjct: 1044 KMCDQLGVPQPEWILSTSVQDVHAFCQRVGFPTLVRPSYVLSGSAMAVISSPEDIDRYLT 1103

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +G           +     +     +       +S   +  + 
Sbjct: 1104 KASLVSGTHPVVVSKYYEGAMEYDV--DIVAHHGRVLCYAICEHLENAGVHSGDATMFLP 1161

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     ++ K +   A      +   G     FL      ++  +E N++   +  S  P
Sbjct: 1162 PQHTKKEVMKRIYEAATQIAGELDVVGPMNVQFLLT-KDEQLRVIEANIR---SSRS-VP 1216

Query: 276  EMAAYAGYSFRE-LLLWMV 293
             ++   G SF   ++  ++
Sbjct: 1217 FVSKTLGISFPAVMVSALL 1235



 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/303 (12%), Positives = 98/303 (32%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL + G K   ++ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKALREEGVKSILVNPNIATVQTDDEMADQVYFVPVTPEAVERVIEKERPDGIM- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + +L  +   +  +L +A+S   +   + +    +           
Sbjct: 453 LGWGGQTALNCGLQLDKLGVLKKYNVQVLGTAISTITVTEDRELFRNALLQINEPVAKSV 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  ++  ++ +   +  + +     Q+L+E
Sbjct: 513 AVTSVAEALKAAADIGFPMMVRAAFCLGGQGSGIVNSEEELSNKVEVALTVAP--QVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  + Y  ++ 
Sbjct: 571 ESVAGW-KEIEYEIVRDIHDNCITVCNMENFDPMGVHTGESIVVAPSQTLTNEEYHMLRT 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    + +G  G     +  +P SR+   +E+N +  ++  S     +   GY    + 
Sbjct: 630 AAIKIIRHLGVVGECNIQYGLEPHSRRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|2245424|gb|AAC16915.1| D-alanine:D-alanine ligase [Streptococcus constellatus]
          Length = 197

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++LIEQ V+  E+  G
Sbjct: 57  EANLTYPVFTKPSNMGSSVGISKSENQDELRSALELAF--KYDSRVLIEQGVNAREIEVG 114

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+     +     V    FY YE KY     T  +PAK+  D+   +++ A  A  AI
Sbjct: 115 LLGNEGAKSSWPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIVTMRQYAEKAFHAI 174

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G++R DF +     ++F  E
Sbjct: 175 GGVGLARCDFFYTDK-GEIFLNE 196


>gi|253568632|ref|ZP_04846043.1| carbamyl phosphate synthetase [Bacteroides sp. 1_1_6]
 gi|251842705|gb|EES70785.1| carbamyl phosphate synthetase [Bacteroides sp. 1_1_6]
          Length = 1075

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARCAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|258570823|ref|XP_002544215.1| methylcrotonoyl-CoA carboxylase subunit alpha [Uncinocarpus reesii
           1704]
 gi|237904485|gb|EEP78886.1| methylcrotonoyl-CoA carboxylase subunit alpha [Uncinocarpus reesii
           1704]
          Length = 551

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 55/153 (35%), Gaps = 9/153 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYV 172
                 I  P +IK +KGG   G+ +    ++    L+       +S+     L+ +   
Sbjct: 23  QQEADKIGYPVLIKAIKGGGGKGMRICSSKETFQDQLMSAKSESRNSFGDDQVLIEKYIT 82

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               +   V  D   +   +            K    +    LP     DI+++ +  A 
Sbjct: 83  TPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPQATRKDIWEKARAAAL 142

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +G  G    +F+FD  + + F++E+N +
Sbjct: 143 A----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 171


>gi|322494078|emb|CBZ29376.1| methylcrotonoyl-coa carboxylase biotinylated subunitprotein-like
           protein [Leishmania mexicana MHOM/GT/2001/U1103]
          Length = 687

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 53/150 (35%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGI 175
            + +  P +IK + GG   G+ ++++ +     L        + +     +L        
Sbjct: 159 ANKVGFPILIKAVSGGGGKGMKIVERLEDFAFMLASAKREAVNFFKDDRVILERYVKRPR 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            + C +  D                    +             + +++ + +  +A  A 
Sbjct: 219 HIECQIFFDKHGRGVFFFERDCSVQ----RRYQKVLEEAPAPHLSMEMRQRIGEVALQAA 274

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +F+FD  +   +++E+N +
Sbjct: 275 KAVGYVGAGTVEFIFDTSTGDFYFMEMNTR 304


>gi|298674485|ref|YP_003726235.1| acetyl-CoA carboxylase biotin carboxylase [Methanohalobium
           evestigatum Z-7303]
 gi|298287473|gb|ADI73439.1| acetyl-CoA carboxylase, biotin carboxylase [Methanohalobium
           evestigatum Z-7303]
          Length = 493

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 76/235 (32%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++ +  V      D      +G   E+       E   I +             K+ 
Sbjct: 61  LDINK-ILDVAEESGADGIHPG-YGFLSENPEFARECEKRGITFIGPSSDVIEKMGSKIS 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ ++   GVPV P        +++   I      P +IK   GG  +G+ ++   +   
Sbjct: 119 ARNIMIDAGVPVVPGTEEPIEDVNTAIDIAESIGFPVIIKASAGGGGIGMKIVHSREDFE 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L    S           +++        +    L                ++      
Sbjct: 179 KALNSIQSIASSAFGDSTVFIEKYVEEPRHIEIQILSDKYGNTIYISDRECSIQRRHQKL 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ KE+   A  A +AIG       +FL+     + ++LE+N +
Sbjct: 239 IEEAPSPIMTPELRKEMGEAAVKAAKAIGYENAGTVEFLY--SKGEFYFLEVNTR 291


>gi|237786280|ref|YP_002906985.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           kroppenstedtii DSM 44385]
 gi|237759192|gb|ACR18442.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           kroppenstedtii DSM 44385]
          Length = 401

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 44/280 (15%), Positives = 86/280 (30%), Gaps = 39/280 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAHL----KPDLAFNVL 58
           GK  A A +  G +V  +D                +D +    + +L    +PD     +
Sbjct: 9   GKEVAIAFQRLGVEVLAVDRYDGAPAHHVAQFHYVIDMTDPDAIKNLVDDVRPDFIVPEI 68

Query: 59  H-----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                 G    +     I        T +      L+ + +                   
Sbjct: 69  EAIATDGLRDLESDYTVIPTAEATRVTMNREEVRRLAGEDLGL-------PTSGYAFAST 121

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ--LLIEQY 171
                D+   +  P V+KP+   S  G  V+   + +      + S    +Q  +++EQ+
Sbjct: 122 RDEFDDAVDAMGFPCVVKPVMSSSGKGQSVLNGPEDLDEAWDYAMSGARVNQARVIVEQF 181

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           VD       +   A    T              ++S        PA +     +  + +A
Sbjct: 182 VDFDYEITLLTVRAVDPSTGKVATWFCEPVGHRQHSGDYVESWQPAPMSDAAAENARSIA 241

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
                A+G RG+   +         V++ E++ +P   GM
Sbjct: 242 ARVTNALGGRGVFGVELFV--KGDDVYFSEVSPRPHDTGM 279


>gi|254391346|ref|ZP_05006550.1| carbamoyl-phosphate synthase large chain [Streptomyces clavuligerus
           ATCC 27064]
 gi|294811546|ref|ZP_06770189.1| Carbamoyl-phosphate synthase large chain [Streptomyces clavuligerus
           ATCC 27064]
 gi|326440068|ref|ZP_08214802.1| carbamoyl phosphate synthase large subunit [Streptomyces
           clavuligerus ATCC 27064]
 gi|197705037|gb|EDY50849.1| carbamoyl-phosphate synthase large chain [Streptomyces clavuligerus
           ATCC 27064]
 gi|294324145|gb|EFG05788.1| Carbamoyl-phosphate synthase large chain [Streptomyces clavuligerus
           ATCC 27064]
          Length = 1105

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 30/308 (9%), Positives = 81/308 (26%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEIADATYVEPITPEFVEKIIAKERPDTLLP 88

Query: 57  VL------------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            L            H     +     ++                  + +   ++      
Sbjct: 89  TLGGQTALNTAISLHERGVLEQYGVELIGANVTAINKGEDRDLFKEVVEEVRRKTGHGES 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   ++        L   P V++P       G      +  +     Q  + +   
Sbjct: 149 ARSVICHSMDDVLAGVDTLGGYPVVVRPSFTMGGAGSGFAHDEDELRRIAGQGLTLSPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   +     +F    +      +          +  
Sbjct: 209 EVLLEESILGWKEYELELMRDKNDNVVVVCSIENFDPMGVHTGDSITVAPSMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
           +       +  +     G     F  +P+  ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 RLRDIGIAIIREVGVDTGGCNIQFAVNPVDGRIIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|149376836|ref|ZP_01894592.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
 gi|149358843|gb|EDM47311.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
          Length = 448

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G K   +   VDR +  V LA            D   N+          
Sbjct: 16  ALRILRACKELGIKTVAVHSQVDRDLMHVRLADESVCIGPNSATDSYLNIPTIISAAEVT 75

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ +   + + GVP  P 
Sbjct: 76  DSVGIHPGYGFLAENADFAEQVEKSGFRFIGPRADTIRLMGNKVSAINSMIAAGVPTVPG 135

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +  T++    I  P +IK   GG   G+ V+  + ++   +  + S      
Sbjct: 136 SDGPLTDDDNRTLEIARKIGYPVIIKAASGGGGRGMQVVHSEAALLKSVQVTQSEAKNSF 195

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L  T   V         ++          P   I  +  
Sbjct: 196 GDATVYLEKYLERPRHVEVQVLADTHGNVIHLGDRDCSMQRRHQKVIEEAPAPNIDPEAR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  +    A + IG  G    +FL+       +++E+N +
Sbjct: 256 EKTLKACVDACKEIGYVGAGTFEFLY--QDGAFYFIEMNTR 294


>gi|34398209|gb|AAQ67194.1| CAD [Schistostoma sp. JKM-2003]
          Length = 1278

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     I     +    + I +   + D+    + ++  GV V PS  
Sbjct: 430 TFGGQTALNCGIELEKTGIFSKYNVKIMGTPIQSIIETEDRKIFSERIAEIGVKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   +  P + +       LG      +  +   +L   +  H +QL+I++
Sbjct: 490 VYSVKEALQAAQNLGYPVMARAAFSLGGLGSGFANNETELQ--VLAQHALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|53713927|ref|YP_099919.1| carbamyl phosphate synthetase [Bacteroides fragilis YCH46]
 gi|253567079|ref|ZP_04844530.1| carbamyl phosphate synthetase [Bacteroides sp. 3_2_5]
 gi|265764274|ref|ZP_06092842.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_16]
 gi|52216792|dbj|BAD49385.1| carbamyl phosphate synthetase [Bacteroides fragilis YCH46]
 gi|251944203|gb|EES84712.1| carbamyl phosphate synthetase [Bacteroides sp. 3_2_5]
 gi|263256882|gb|EEZ28228.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_16]
          Length = 1076

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P+    
Sbjct: 28  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIRKERPEGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYREGILEKYNVKVLGTPVQAIIDTEDRELFVDKLNEIDVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  DLL   +++   Q+L+E+
Sbjct: 148 VENAEDARRAARELGYPVIVRAAYALGGLGSGFCDNEEEL--DLLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|320334713|ref|YP_004171424.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           maricopensis DSM 21211]
 gi|319756002|gb|ADV67759.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           maricopensis DSM 21211]
          Length = 445

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/215 (12%), Positives = 64/215 (29%), Gaps = 7/215 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +      +      K   + + +   VP  P    
Sbjct: 77  AIHPGYGFMAENPDFAEMCREHGIVFIGPTPESMRALGSKAGGRDIAAQSNVPTVPGTGV 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P ++K   GG   G  V++    +     Q+             
Sbjct: 137 LDSVEDALFAAKNIGYPVLLKASAGGGGRGQKVVRTQDELRSAFGQAQEEARLYFGDPAI 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++        +    +   +  V         ++  +       P+ +P  + +E+   
Sbjct: 197 IMEKFLEEFRHVEVQVMGDGQGHVIHIGERDCSIQRRNQKLIEEAPSTLPDTLRQEILSA 256

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                Q +   G    +F+ D      +++E+N +
Sbjct: 257 GVRLAQHVNYAGAGTLEFIVDT-DGNFYFMEMNTR 290


>gi|301163604|emb|CBW23155.1| putative carbamoyl-phosphate synthase large chain 1 [Bacteroides
           fragilis 638R]
          Length = 1076

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P+    
Sbjct: 28  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIRKERPEGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYREGILEKYNVTVLGTPVQAIIDTEDRELFVDKLNEIDVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  DLL   +++   Q+L+E+
Sbjct: 148 VENAEDARRAARELGYPVIVRAAYALGGLGSGFCDNEEEL--DLLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|114798573|ref|YP_760945.1| acetyl-CoA carboxylase biotin carboxylase [Hyphomonas neptunium
           ATCC 15444]
 gi|114738747|gb|ABI76872.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomonas neptunium
           ATCC 15444]
          Length = 457

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 17/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D      +G   E+     ++E   I +   
Sbjct: 52  ESVCIGPAPSSESYLKKSRILAAAEITGADAIHPG-YGFLSENAQFAEMVEAHGIAFIGP 110

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                 +  DK+ +KQ +   GVP  P     +        +   I  P ++K   GG  
Sbjct: 111 TAEHIRVMGDKIAAKQAMIEAGVPCVPGSDGAVESIADAKKAAKKIGFPILVKASAGGGG 170

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +   +  +   +  + + +         Y++        +    +  T   V    
Sbjct: 171 RGMKLAMTEADLENAIKTAKTESKAAFGDDAVYLEKYLQGPRHIEIQVIADTHGNVAHLW 230

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKV 257
                L+  +       P+     + +E        A Q +G RG    +FL+     + 
Sbjct: 231 ERDCSLQRRNQKVFEEAPSPALNQVQREEIGGIVARAMQKLGYRGAGTIEFLY--EDGRF 288

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 289 YFIEMNTR 296


>gi|33151744|ref|NP_873097.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus ducreyi
           35000HP]
 gi|81836065|sp|Q7VNI4|PURT_HAEDU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33147965|gb|AAP95486.1| phosphoribosylglycinamide formyltransferase 2 [Haemophilus ducreyi
           35000HP]
          Length = 393

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 38/287 (13%), Positives = 78/287 (27%), Gaps = 39/287 (13%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                     D ++  V+   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAQQVAHRAYTISMLDDDALRAVVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATETLVELEQKGYQVVPTAKATQLTMNREGIRRLAAEELGLPT-SPYRFVDNFADFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +IK    I             D         G  + 
Sbjct: 143 QAVLAVGVPCVVKPIMSSSGHGQSIIKSLDQIQQAW---------DYSQAGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-----HVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V   +  S+                  P  +     ++ Q++A  
Sbjct: 194 VEGFIKFDYEITLLTVRHINGTSFLAPIGHRQQNGDYRESWQPQAMSEVALQKAQQIAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
              A+G RGI   +         + + E++ +P      +    +  
Sbjct: 254 ITTALGGRGIFGVELFVCGDD--IIFNEVSPRP--HDTGMVTMASQE 296


>gi|114332421|ref|YP_748643.1| urea amidolyase related protein [Nitrosomonas eutropha C91]
 gi|114309435|gb|ABI60678.1| urea amidolyase related protein [Nitrosomonas eutropha C91]
          Length = 1206

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 29/248 (11%), Positives = 75/248 (30%), Gaps = 22/248 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +         +   K  ++ +     VP+ P    
Sbjct: 77  AIHPGYGFLSENARFAEQCATQGICFLGPTPEQMRIFGLKHTARMLAQQLDVPMLPGTGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +        I  P ++K   GG  +G+ +      +        +    +      
Sbjct: 137 LESIKIACQEALRIGYPVMLKSTAGGGGIGMRLCHSQPELVDAYESVRNLAQSNFSNAGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
           +++        +           V         ++  +       PA     + +   Q 
Sbjct: 197 FLEKYIDQARHVEVQIFGDGRGKVVALGERDCSMQRRNQKVIEETPAPGLSPVTRTALQE 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
            A    +++  +     ++++D  + + ++LE+N +     G+T +          G   
Sbjct: 257 TAVRLGESVQYQSAGTVEYVYDAAADQFYFLEVNTRLQVEHGVTEM--------VTGI-- 306

Query: 286 RELLLWMV 293
            +L+ WM+
Sbjct: 307 -DLVEWMI 313


>gi|99081868|ref|YP_614022.1| pyruvate carboxylase [Ruegeria sp. TM1040]
 gi|99038148|gb|ABF64760.1| pyruvate carboxylase [Ruegeria sp. TM1040]
          Length = 1146

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 47/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P ++K   GG   G+  I  +  +   +L+            E Y++
Sbjct: 144 MDAIRKEAAEVGYPLMLKASWGGGGRGMRPIHSEDELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
            +      +    L      +         ++  +       PA    D    E+  L  
Sbjct: 204 KMITRARHVEVQILGDKHGEIYHLYERDCSVQRRNQKVVERAPAPYLTDAQRAEICDLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              Q +        +FL D  + K +++E+N +
Sbjct: 264 KICQHVNYECAGTVEFLMDMETEKFYFIEVNPR 296


>gi|294650446|ref|ZP_06727806.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
 gi|292823666|gb|EFF82509.1| urea carboxylase [Acinetobacter haemolyticus ATCC 19194]
          Length = 1206

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      Q++                    +++       
Sbjct: 152 ADRIGYPIMLKSTAGGGGIGLTRCDTPQALTNAYESVKRLGEQFFKDAGVFIECFIDKAR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    +   K++ + A    +++ 
Sbjct: 212 HVEVQIFGDGKGQVVAFGERDCSLQRRNQKVVEETPAANLPEATRKKLHQAAIELGKSVN 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P         EM    G    +L+  M++
Sbjct: 272 YRSAGTVEFIYDANRDEFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLK 319

Query: 295 DASCL 299
            A+  
Sbjct: 320 VAAGD 324


>gi|259484115|tpe|CBF80060.1| TPA: pyruvate carboxylase, putative (AFU_orthologue; AFUA_5G07570)
           [Aspergillus nidulans FGSC A4]
          Length = 653

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H +  P +IK + GG   GI ++ +D  +   +  S++ +    + +E+         
Sbjct: 155 FAHNVGYPVMIKAVDGGGGRGIRLVHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHI 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +         +    +        +     +  ++      ++   +   A    +AI 
Sbjct: 215 EIQIVGDGKDVQHLWERDCSVQRRFQKIVEIAPSLI-RDRNQELVSRIADAAVRMMKAIR 273

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R +   +FL +    + ++LEIN +
Sbjct: 274 YRSLGTVEFLVNEQLNEFYFLEINPR 299


>gi|226954243|ref|ZP_03824707.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
 gi|226835007|gb|EEH67390.1| urea carboxylase [Acinetobacter sp. ATCC 27244]
          Length = 1206

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      Q++                    +++       
Sbjct: 152 ADRIGYPIMLKSTAGGGGIGLTRCDTPQALTNAYESVKRLGEQFFKDAGVFIECFIDKAR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    +   K++ + A    +++ 
Sbjct: 212 HVEVQIFGDGKGQVVAFGERDCSLQRRNQKVVEETPAANLPEATRKKLHQAAIELGKSVN 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P         EM    G    +L+  M++
Sbjct: 272 YRSAGTVEFIYDANRDEFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLK 319

Query: 295 DASCL 299
            A+  
Sbjct: 320 VAAGD 324


>gi|67901552|ref|XP_681032.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
 gi|40742361|gb|EAA61551.1| hypothetical protein AN7763.2 [Aspergillus nidulans FGSC A4]
          Length = 1057

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 53/146 (36%), Gaps = 1/146 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H +  P +IK + GG   GI ++ +D  +   +  S++ +    + +E+         
Sbjct: 197 FAHNVGYPVMIKAVDGGGGRGIRLVHRDDDLGHAVRASAAESPSQTVFVEKAAIDGFHHI 256

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +         +    +        +     +  ++      ++   +   A    +AI 
Sbjct: 257 EIQIVGDGKDVQHLWERDCSVQRRFQKIVEIAPSLI-RDRNQELVSRIADAAVRMMKAIR 315

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R +   +FL +    + ++LEIN +
Sbjct: 316 YRSLGTVEFLVNEQLNEFYFLEINPR 341


>gi|156146830|gb|ABU53427.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|60682134|ref|YP_212278.1| putative carbamoyl-phosphate synthase large chain 1 [Bacteroides
           fragilis NCTC 9343]
 gi|60493568|emb|CAH08356.1| putative carbamoyl-phosphate synthase large chain 1 [Bacteroides
           fragilis NCTC 9343]
          Length = 1076

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P+    
Sbjct: 28  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIRKERPESIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+      ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYREGILEKYNVKVLGTPVQAIIDTEDRELFVDKLNEIDVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  DLL   +++   Q+L+E+
Sbjct: 148 VENAEDARRAARELGYPVIVRAAYALGGLGSGFCDNEEEL--DLLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|271964313|ref|YP_003338509.1| carbamoyl-phosphate synthase large subunit [Streptosporangium
           roseum DSM 43021]
 gi|270507488|gb|ACZ85766.1| carbamoyl-phosphate synthase, large subunit [Streptosporangium
           roseum DSM 43021]
          Length = 1097

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/308 (11%), Positives = 81/308 (26%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG      L   GF+V  ++                    +    V  ++A  +PD    
Sbjct: 29  SGTQACRVLRAEGFRVILVNSNPATIMTDPEFADATYVEPITPDMVEKIIAKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
            L G         +     L +      G    A+   + R         V         
Sbjct: 89  TLGGQTALNTAIALHEAGVLAKYDVELIGADVDAIQAGENRELFKGIVAKVARERGLNAD 148

Query: 111 ------ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        + +   +  P V++P      +G      D+ +          +   
Sbjct: 149 SARSFVCHTLDECLTAAGELGYPLVVRPSFTMGGVGSGFAHDDEGLRRIAGAGLDASPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   I     +     +      +          +  
Sbjct: 209 EVLLEESILGWKEYELEVMRDKADNVVIVCSIENIDPMGVHTGDSVTVAPALTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F  DP + ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 NMRDVAIAVIREVGVDTGGCNIQFAVDPATGRMVVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|254441022|ref|ZP_05054515.1| pyruvate carboxylase [Octadecabacter antarcticus 307]
 gi|198251100|gb|EDY75415.1| pyruvate carboxylase [Octadecabacter antarcticus 307]
          Length = 1147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+  I  +  +   +L+            E Y++ + +    +   
Sbjct: 156 YPLMLKASWGGGGRGMRAIMSEDELEEKVLEGRREAEAAFGNSEGYLEKMIMRARHVEVQ 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCRGIS 244
            L  +  A+         ++  +       PA       +E          + +      
Sbjct: 216 ILGDSHDAIYHLWERDCSVQRRNQKVVERAPAPYLSGTQREQICALGKKICEHVNYECAG 275

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL D  S + F++E+N +
Sbjct: 276 TVEFLMDMDSGEFFFIEVNPR 296


>gi|50308629|ref|XP_454317.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643452|emb|CAG99404.1| KLLA0E08119p [Kluyveromyces lactis]
          Length = 1829

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 81/314 (25%), Gaps = 51/314 (16%)

Query: 22  CASALEDAGFKVSQI--DVDR--------SVGLVL-------AHLKPDLAFNVL------ 58
               L+  G K   +  D D+           + L        +L  D   N        
Sbjct: 639 IMKTLKRMGIKSVAVYSDPDKYSQHVTDADFSVALHGRTAAETYLDIDKIINAAKKTGAQ 698

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSG---ILASALSMDKMRSKQVVSSCGVPVCPS 110
                +G   E+           I +       I    L        +      VP    
Sbjct: 699 AIIPGYGFLSENADFSDRCSQENIVFVGPSGDAIRKLGLKHSAREIAERAKVPLVPGSGL 758

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +   +    +  P ++K   GG  +G+  +  +  I                    
Sbjct: 759 IKDAKEAKEVAKKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFETVQHQGKSYFGDAGV 818

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           +++        +    +                L+  +       PA    +    +++ 
Sbjct: 819 FMERFVNNARHVEIQMMGDGFGKAIAIGERDCSLQRRNQKVIEETPAPNLPEATRAKMRA 878

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGY 283
            +      +  +     +F++D    + ++LE+N +              +       G 
Sbjct: 879 ASERLGSLLKYKCAGTVEFIYDEQRDEFYFLEVNAR----------LQVEHPITEMVTGL 928

Query: 284 SFRELLLWMVEDAS 297
              +L+ WM+  A+
Sbjct: 929 ---DLVEWMLRIAA 939


>gi|294495632|ref|YP_003542125.1| carbamoyl-phosphate synthase large subunit [Methanohalophilus mahii
           DSM 5219]
 gi|292666631|gb|ADE36480.1| carbamoyl-phosphate synthase large subunit [Methanohalophilus mahii
           DSM 5219]
          Length = 1079

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 103/303 (33%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     +L + GF+V  ++ + +                     +G ++   +PD    
Sbjct: 30  SGSQACRSLREEGFEVVLVNSNPATIMTDPEMADAVYIEPLEAPLIGEIIEKERPDGIIA 89

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G  G +   +     ILE   +    + + A   + D+   KQ + +    VP   +
Sbjct: 90  GLGGQTGLNVTSELAELGILEKYGVEMLGTPLDAITNTEDRELFKQTMENIGEKVPRSKA 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +   +    +  P +++P       G  +    + +   + +    +  +Q+L+E+
Sbjct: 150 ISSLQEAEEVIDELGLPIIVRPAYTLGGAGGGIAHTKEELLQIVDRGIRLSRINQVLVEE 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   +     +       ++  +        +  + ++ ++  
Sbjct: 210 SVLGWKEFEYEVMRDSNDTCIVICNMENIDPMG-VHTGESIVVTPSQTLNDEEHQMLRTA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     F       +   +E+N  P ++  S     +   GY    +  
Sbjct: 269 AIKIIRELGIEGGCNIQF--ATKDGEYRVVEVN--PRVSRSS--ALASKATGYPIARVTA 322

Query: 291 WMV 293
            +V
Sbjct: 323 KIV 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 100/307 (32%), Gaps = 44/307 (14%)

Query: 20  KACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVL 58
            A   A+ +   +   I+ +                       V  V+    PD      
Sbjct: 576 HAVH-AIREEDIEAHIINNNPETVSTDYDTSDKLFFEPLTLEDVMNVIDRENPDGVLVQF 634

Query: 59  HGNFGEDGLVQAILELLEIPY-----THSGILASALSMDKMRSKQVVSSCGVPVCP--SI 111
            G    +  +    EL            +      ++ D+ +  Q ++   +        
Sbjct: 635 GGQTSVNLAIPLQKELARRTDLKTKIMGTSPENMDVAEDREKFNQRLAKMNINQPDAGYA 694

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +  ++    I  P +++P        + ++     +   ++++   +    +LI+ +
Sbjct: 695 TSEKEALEVADDIGYPVLVRPSYVLGGRAMEIVYDSADLERYMIEAVRVSPEHPILIDDF 754

Query: 172 VDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           ++G +E+    + D    +    +   +       +S  ++  + P  +  +I + V+  
Sbjct: 755 LEGAVEIDVDAVSDGKDVLIGAIMEHIEEAG---VHSGDSACVIPPYDLSEEILETVRDY 811

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP--EMAAYA-- 281
                 A+  +G+            +V+ LE N       P ++  S  P  ++AA    
Sbjct: 812 TRKIAMALEVKGLINIQM--ATKDGEVYVLEANPRSSRTIPFVSKSSGIPLAKIAAQVII 869

Query: 282 GYSFREL 288
           G+S ++L
Sbjct: 870 GHSLKDL 876


>gi|134296507|ref|YP_001120242.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           vietnamiensis G4]
 gi|172044367|sp|A4JGK4|PURT_BURVG RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|134139664|gb|ABO55407.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia vietnamiensis G4]
          Length = 404

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRAHVIDMTDAAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFDAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRSEADVKAAWDYAMAGGRVNHGRVIVEGFIDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLATRTYFCEPVGHVQVAGDYVESWQPQPMSAAALQKSRDIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|4587569|gb|AAD25800.1|AC006550_8 Identical to gb|U12536 3-methylcrotonyl-CoA carboxylase precursor
           protein from Arabidopsis thaliana. ESTs gb|H35836,
           gb|AA651295 and gb|AA721862 come from this gene
          Length = 730

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/159 (13%), Positives = 51/159 (32%), Gaps = 3/159 (1%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ +++  +      L +         
Sbjct: 170 YHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFG 229

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +    ++             + V    +    F+   L +   +   +   +    + + 
Sbjct: 230 VNTILLE---KYITRPRHIEVQVVSREISCCFFFHERLIFGDKHGNVLHLYERDCSVQRR 286

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            Q++   A  A+G       +F+ D  S + +++E+N +
Sbjct: 287 HQKIIEEAPAAVGYYNAGTVEFIVDTESDQFYFMEMNTR 325


>gi|219670027|ref|YP_002460462.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
 gi|219540287|gb|ACL22026.1| carbamoyl-phosphate synthase, large subunit [Desulfitobacterium
           hafniense DCB-2]
          Length = 1065

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 35/301 (11%), Positives = 84/301 (27%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL++ G +V  ++ +                       +  ++   +PD     
Sbjct: 36  GTQACRALQEEGVEVVLVNSNPATIMTDQEVADRIYIEPLTVEFLERIIERERPDGIIAT 95

Query: 58  LHGNFGED--GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC----GVPVCPSI 111
           + G  G +    +     L        G    +++  + R             VP    +
Sbjct: 96  MGGQTGLNLAFQLAEKGILQRCGVQLMGTSLDSITKAEDREHFRSLMRELGEPVPPSVIV 155

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     I  P +++P       G  +    + +          +  DQ+L+E+ 
Sbjct: 156 SDLEEALSFGEEIGYPVIVRPAYTLGGTGGGIAHNREQLKEIAKSGLQASLIDQILVEKS 215

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   S           +     +                 ++   ++  +
Sbjct: 216 VAGWKEIEYEVLRDSQGNCITICNMENMDPVGVHTGDSMVVAPCQTLTDREVQA-LRTSS 274

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G     +   P   +   +E+N  P ++  S     +   GY   ++   
Sbjct: 275 RKIVAALGIEGGCNVQYALHPERLEYVVIEVN--PRLSRSS--ALASKATGYPIAKVAAK 330

Query: 292 M 292
           +
Sbjct: 331 I 331



 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 88/297 (29%), Gaps = 31/297 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           S  +   AL+ AG +   I         D D              V  VL   +P+    
Sbjct: 580 SVHSVL-ALKKAGVETIIINNNPETVSTDFDTADRLYFEPLTLEDVSAVLEREQPEGVIV 638

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G                I  T    +  A    +            P          
Sbjct: 639 QFGGQTAIGLAKPLAERGYNILGTGIEDIDRAEERGQFDEVLHTIGAKRPKGGQASSLAE 698

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    I  P +I+P        + ++     +   + ++ +   G +L ++QY+ G E
Sbjct: 699 AVEVAARIGYPLMIRPSFVLGGRAMEIVYSASELENVVNRAMADFPGQELWMDQYLVGKE 758

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D         +   +       +S  +     P  +   + + +  L     +
Sbjct: 759 VEVDAISDGKNVSLPGIMEHLERAG---VHSGDSIAVYPPQTLSEPLIQRITLLTTEIAR 815

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A+   G+    ++      +V+ +E+N +   T     P ++   G S  +    ++
Sbjct: 816 ALNVIGLLNIQYVIFQ--DEVYVIEVNPRSSRT----VPFISKVTGLSIVDYATEVI 866


>gi|126178940|ref|YP_001046905.1| carbamoyl phosphate synthase large subunit [Methanoculleus
           marisnigri JR1]
 gi|167006444|sp|A3CU73|CARB_METMJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|125861734|gb|ABN56923.1| carbamoyl-phosphate synthase large subunit [Methanoculleus
           marisnigri JR1]
          Length = 1056

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 93/300 (31%), Gaps = 32/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     AL + G +V  +         D D +            +  ++A  KPD   +
Sbjct: 29  SGSQACRALREEGVEVVLVNSNPATIQTDPDTADVIYIEPLKAELIAKIIAKEKPDGILS 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          LE +EI  T    +      ++ R         VP    + 
Sbjct: 89  GMGGQTGLNMTAELAEMGALEGVEILGTPLEAIYRGEDREQFRDLMNAIGEPVPRSMILE 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 ++   +  P +I+P       G  V    + +        + +   Q+L+E+ V
Sbjct: 149 HMNQIDEAIREVGLPAIIRPAYTLGGSGGGVAHTPEEMRRICELGLARSRIHQVLVEESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G               T I V   +       ++  +        +  D ++ ++  A 
Sbjct: 209 AGW-KEIEFEVMRDAADTCIIVCGMENVDPMGIHTGESVVVAPILTLRDDEFQTLRTAAI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G     F +         +E+N  P ++  S     +   GY    +   +
Sbjct: 268 KIIRALDVQGGCNIQFAY--KDGDYRIIEVN--PRVSRSS--ALASKATGYPIARVAAKI 321



 Score = 39.5 bits (90), Expect = 0.61,   Method: Composition-based stats.
 Identities = 37/293 (12%), Positives = 92/293 (31%), Gaps = 38/293 (12%)

Query: 25  ALEDA-GFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------HGNF 62
           AL +  G +V  +         D D S  L    ++ +   N+L             G  
Sbjct: 564 ALREEEGIEVHIVNNNPETVSTDADTSDRLFFEPMQLEDVMNILKKDDYYGVMVQFGGQN 623

Query: 63  GEDGLVQAILELLEIPYTH------SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +  V    E+  +             + +A   D+            P   S      
Sbjct: 624 SVNLAVPLEAEIRRLDLPTKILGTSPDAMDAAEDRDRFSRLLTRLEIPSPANSSAYSEEE 683

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGI 175
             +    I  P +++P        + ++  +  +   + ++   +    +LI+ +  + +
Sbjct: 684 AREMAGEIGYPVLVRPSYVLGGRAMELVHDEAELESYIKEAVRVSRKHPVLIDSFLQNAV 743

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+    + D +  +    +   ++      +S  ++  + P  +   +   V+       
Sbjct: 744 EIDVDAVSDGTDVLIGGIMEHIEWAG---VHSGDSACVIPPQSLTPSVIARVRDYTKKIA 800

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +G  G+    +     +  V+ LE N +   T     P +A   G +  ++
Sbjct: 801 LGLGVVGLINIQYAV--RNDVVYVLEANPRASRT----VPFVAKATGIALAKI 847


>gi|7157925|gb|AAF37342.1|AF170803_1 D-alanine:D-alanine ligase [Enterococcus columbae]
          Length = 199

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 37/164 (22%), Positives = 66/164 (40%), Gaps = 6/164 (3%)

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                +         +     +  +  P  +KP   GSS+GI   +  + +   L +   
Sbjct: 39  PYMPVLYTQWKEQPQQIFEQCEGSLLYPMFVKPANMGSSVGISKAENREELDNALKEL-- 96

Query: 160 WNHGDQLLIEQYVDGIELTCGV--MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
             +  +++IEQ ++  E+   V    D    V    V    FY Y  KY     T  +PA
Sbjct: 97  -LYDTRVIIEQGIEAREIEVAVLGNEDVRTTVAGEIVKDVAFYDYNSKYIDNKITMQIPA 155

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++P ++ ++ Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 156 EVPQEVQEKAQEYAKKAYTMLGGSGLSRCDFFLT-NKNELFLNE 198


>gi|322492801|emb|CBZ28080.1| conserved hypothetical protein [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 516

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 47/251 (18%), Positives = 85/251 (33%), Gaps = 20/251 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE-LLEIPYTHSGILASALSMDKMRSKQ 98
           R +  ++   K D+ +N   G   ED     ++E L E    H+G ++    M K   K 
Sbjct: 61  RQIRQLVMSGKFDVFYNQCDGAKDEDRAGVEVVEALEEFKVPHTGAISKYYEMSKPDMKL 120

Query: 99  VVSSCGVPVCPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLL 155
           V     +      ++            +  P ++K + G SS+G+    K      L   
Sbjct: 121 VAYYYNIATANYAVLELGDDIESLCGKLQFPCIVKHISGYSSVGMDKSCKVYDMARLVDR 180

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD----------FYSYELK 205
            +         L+E++V G E T     D++        P              +  +  
Sbjct: 181 ATRFMAEYQFALVEEFVSGDEATILACNDSTQPEGVRVFPPVQVTFPEGEDFKHFQLKWA 240

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV 264
                    +P + P  +   +        + +G  G  R D   D  +  KV +LEIN 
Sbjct: 241 SYEGMKWTQVPQEDP-AMQDMIDIARSAFKRMMGGIGYGRIDVRIDRQNHNKVVFLEINP 299

Query: 265 QPGMTPVSIFP 275
             G+    ++P
Sbjct: 300 NCGI----MYP 306


>gi|296808731|ref|XP_002844704.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma otae CBS
           113480]
 gi|238844187|gb|EEQ33849.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma otae CBS
           113480]
          Length = 712

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 115 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 174

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 175 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLKSAKSEAMSSFGDDTMLIEK 234

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             +    +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 235 YIITPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 294

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 295 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|149186987|ref|ZP_01865295.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           SD-21]
 gi|148829376|gb|EDL47819.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           SD-21]
          Length = 449

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V + +  +   + Q+ S           Y++       
Sbjct: 149 AAEIGFPVIIKAASGGGGRGMKVCESEDQLETLMKQAGSEAKAAFGDATVYIEKYLGDPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +                     L+          P+ +  +  +         A + +G
Sbjct: 209 HIEFQVFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVLGEEDRMRMGEVCAQAMRDMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTVEFLW--ENGEFYFIEMNTR 292


>gi|91217606|ref|ZP_01254564.1| pyruvate carboxylase [Psychroflexus torquis ATCC 700755]
 gi|91184286|gb|EAS70671.1| pyruvate carboxylase [Psychroflexus torquis ATCC 700755]
          Length = 1150

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +     +S             +++       
Sbjct: 150 AERIGFPLMLKAASGGGGRGMRVLRSMGELEKAYGESRREAKNAFGDETVFLEKFIENPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +                ++          P+K   + +  ++   A    +A+ 
Sbjct: 210 HIEIQIVADNFGNTLHLFERDCSVQRRYQKVIEFAPSKDLDETVKNKLYSYAIKICKAVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 270 YNNIGTVEFLVD-DDGSIYFIEVNPR 294


>gi|126697587|ref|YP_001086484.1| pyruvate carboxylase [Clostridium difficile 630]
 gi|254973672|ref|ZP_05270144.1| pyruvate carboxylase [Clostridium difficile QCD-66c26]
 gi|255091064|ref|ZP_05320542.1| pyruvate carboxylase [Clostridium difficile CIP 107932]
 gi|255304962|ref|ZP_05349134.1| pyruvate carboxylase [Clostridium difficile ATCC 43255]
 gi|255312717|ref|ZP_05354300.1| pyruvate carboxylase [Clostridium difficile QCD-76w55]
 gi|255515477|ref|ZP_05383153.1| pyruvate carboxylase [Clostridium difficile QCD-97b34]
 gi|255648570|ref|ZP_05395472.1| pyruvate carboxylase [Clostridium difficile QCD-37x79]
 gi|260681790|ref|YP_003213075.1| pyruvate carboxylase [Clostridium difficile CD196]
 gi|260685387|ref|YP_003216520.1| pyruvate carboxylase [Clostridium difficile R20291]
 gi|306518700|ref|ZP_07405047.1| pyruvate carboxylase [Clostridium difficile QCD-32g58]
 gi|115249024|emb|CAJ66835.1| Pyruvate carboxylase [Clostridium difficile]
 gi|260207953|emb|CBA60079.1| pyruvate carboxylase [Clostridium difficile CD196]
 gi|260211403|emb|CBE01480.1| pyruvate carboxylase [Clostridium difficile R20291]
          Length = 1143

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 18/243 (7%)

Query: 35  QID--VDRSVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            ID  +D    + LA   K D      +G   E+       E   I +         +  
Sbjct: 60  PIDAYLDMDGIIDLAKRKKVDAIHPG-YGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P     I       +  + I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S     +      + +   D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYERDCSVQ-- 236

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +       +     +   + KE+   A    + +G       +FL D      +++E+
Sbjct: 237 --RRHQKIIEYAPAFSLDDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIEM 293

Query: 263 NVQ 265
           N +
Sbjct: 294 NTR 296


>gi|168006265|ref|XP_001755830.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693149|gb|EDQ79503.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 794

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + IS P +IK  +GG   G+ ++  +      L  +   +          ++       
Sbjct: 238 ANRISYPVLIKATQGGGGKGMRIVHNEADFLESLASAQRESQAAFGDSRVLIEKYISRPR 297

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          P   I  +  + + + A  A +A+G
Sbjct: 298 HIEVQIFADKHGNAVHLNERDCSVQRRHQKIIEEAPAPNITPEFRQRIGQAAVDAAKAVG 357

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D +S   +++E+N +
Sbjct: 358 YVSAGTVEFIVDTISGDFYFMEMNTR 383


>gi|115524994|ref|YP_781905.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115518941|gb|ABJ06925.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodopseudomonas palustris BisA53]
          Length = 451

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 71/219 (32%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHNLHFIGPKSEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M   H I  P ++K   GG   G+ V +    + L L  + +        
Sbjct: 135 DGAVTPDDDAMSIAHAIGFPVLVKAASGGGGRGMKVAQTPDDLMLALSTAGNEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L                L+          P+ I   +   +
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPILSAEARAK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +      A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGATCAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|315048811|ref|XP_003173780.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma gypseum
           CBS 118893]
 gi|311341747|gb|EFR00950.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arthroderma gypseum
           CBS 118893]
          Length = 712

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 76/216 (35%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 115 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 174

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+   + L+ +
Sbjct: 175 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARTAAEFQDQLRSAKSEAKSSFGDDNMLIEK 234

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 235 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 294

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 295 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|262372555|ref|ZP_06065834.1| urea carboxylase [Acinetobacter junii SH205]
 gi|262312580|gb|EEY93665.1| urea carboxylase [Acinetobacter junii SH205]
          Length = 1201

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/185 (14%), Positives = 60/185 (32%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG  +G+   +  Q++                    +++       
Sbjct: 147 ANRIGYPIMLKSTAGGGGIGLTRCETPQALTDAYESVKRLGEQFFKDAGVFIECFIDKAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    +   K++ + A    +++ 
Sbjct: 207 HVEVQIFGDGKGQVVAFGERDCSLQRRNQKVVEETPAANLPEATRKKLHQAAIELGKSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P         EM    G    +L+  M++
Sbjct: 267 YRSAGTVEFIYDANRDEFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLK 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 VAAGD 319


>gi|255099179|ref|ZP_05328156.1| pyruvate carboxylase [Clostridium difficile QCD-63q42]
          Length = 1143

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/243 (16%), Positives = 82/243 (33%), Gaps = 18/243 (7%)

Query: 35  QID--VDRSVGLVLAH-LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            ID  +D    + LA   K D      +G   E+       E   I +         +  
Sbjct: 60  PIDAYLDMDGIIDLAKRKKVDAIHPG-YGFLAENAEFARKCEENGITFIGPSSKVMNMMG 118

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           DK+ SK++     V   P     I       +  + I  P +IK   GG   G+ ++ ++
Sbjct: 119 DKINSKKIAKEVNVQTIPGVEKAIRSTEEAKEVANKIGYPVMIKASNGGGGRGMRIVHRE 178

Query: 148 QSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           + + L+   + S     +      + +   D   +   ++GD   ++  +          
Sbjct: 179 EDLELEYETACSESRKAFGEDIIFIEKYIADPKHIEVQILGDNYGNIVHLYERDCSVQ-- 236

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +       +     +   + KE+   A    + +G       +FL D      +++E+
Sbjct: 237 --RRHQKIIEYAPAFSLEDKVRKEICEDAVKLSKHVGYSNAGTLEFLVDANGGH-YFIEM 293

Query: 263 NVQ 265
           N +
Sbjct: 294 NTR 296


>gi|254466525|ref|ZP_05079936.1| carbamoyl-phosphate synthase, large subunit [Rhodobacterales
           bacterium Y4I]
 gi|206687433|gb|EDZ47915.1| carbamoyl-phosphate synthase, large subunit [Rhodobacterales
           bacterium Y4I]
          Length = 1118

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFGVEMIGAKRDAIEMAEDRKLFREAMDRLGIENPRATI 148

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     ++                  I  P +I+P       G  V              
Sbjct: 149 VTAPKRENGTADLDEGVRIALEALDDIGLPAIIRPAFTLGGTGGGVAYNRDDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 106/316 (33%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 585 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDAGYETIMINCNPETVSTDYDTSD 637

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 638 RLYFEPLTFEHVMEILRVEQDNGTLHGVIVQFGGQTPLKLANALEEEGIPILGTSPDAID 697

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 698 LAEDRERFQALVNQLGLKQPKNGIASTGEQAIEIAGEIGFPLVIRPSYVLGGRAMEIVRD 757

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 758 MDQLKRYIAEAVVVSGDSPVLLDSYLSGAVELDVDALCDGKDVHVTGIMQHIEEAG---V 814

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+  +++        A+   G+    F       +++ +E+N +
Sbjct: 815 HSGDSACSLPPYSLEKDMIDQIKVQTNALALALNVVGLMNVQFAI--KDDEIYLIEVNPR 872

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 873 ASRT----VPFVAKAT 884


>gi|290968036|ref|ZP_06559585.1| pyruvate carboxylase [Megasphaera genomosp. type_1 str. 28L]
 gi|290781942|gb|EFD94521.1| pyruvate carboxylase [Megasphaera genomosp. type_1 str. 28L]
          Length = 1144

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 77/239 (32%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+  +    E   I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRIAHEHDVDAIHPG-YGFLSENADLAKRCEEEGIIFIGPRVEHLIMFGDKIN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+   P     ++           +  P ++K + GG   G+ ++     + 
Sbjct: 122 ARIQAKKAGIQFIPGSDGPVMNYEEVKRFAKEVGFPIMLKAVNGGGGRGMRMVNNMADLQ 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  L +  V+   +   +MGD   +V  +            K 
Sbjct: 182 EAYDRAKSEAKLAFGNDEIYLEKCIVNPKHIEVQIMGDEHGNVIHLHERDCSIQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP      +   +   A    + +        +FL  P     +++E+N +
Sbjct: 242 VEVAPAFSLPP----ALRARICDAAITLMKNVHYVNAGTVEFLVTP-DENFYFIEVNPR 295


>gi|218261631|ref|ZP_03476373.1| hypothetical protein PRABACTJOHN_02041 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223913|gb|EEC96563.1| hypothetical protein PRABACTJOHN_02041 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1076

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIAKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +   GV    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYNVRVLGTPVQAIMDTEDRELFVRKLDEIGVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAAGLGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|3821373|emb|CAA13253.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     +  +PA I  ++   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKISMDIPANISDEVIAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +   + ++F  E
Sbjct: 125 GGLGLSRCDFFYT-DTGEIFLNE 146


>gi|148711777|gb|ABR02315.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711813|gb|ABR02333.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711817|gb|ABR02335.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ VD  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVDAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|222056052|ref|YP_002538414.1| protein of unknown function DUF201 [Geobacter sp. FRC-32]
 gi|221565341|gb|ACM21313.1| protein of unknown function DUF201 [Geobacter sp. FRC-32]
          Length = 395

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 17/235 (7%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G             L               + +K R   + +  G+    +  +    + 
Sbjct: 80  GEETYLIAKHKQKFLQHTNVVVPDYDQILTAHNKDRWGALAAELGIRCPATFEIEDVRLG 139

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW-NHGDQLLIEQYVDGIELT 178
               +  P +IKP +GG   GI+ +   Q +   L +   W    ++  I+Q +DG    
Sbjct: 140 RADRLPFPVLIKPKQGGGGWGIVQVDSPQEMESLLSRDDHWGRPWERFFIQQKIDGQTHC 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++        ++   +   Y  +   ++L  +           +K  +       + +
Sbjct: 200 VAMLFRQGEYRAKVGYRQLRSYPIKCGQATLRISV---------EHKGAEDSLQRLLEEM 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ-PGMTPVSIFPEMAAYAGYSFRELLLWM 292
              G+ ++DF+ +  S   + +++N +  G    SI        G  F  L+  +
Sbjct: 251 KWHGVCQADFIVEKCSGVPYLIDVNPRFWGSLAQSI------ACGVDFPYLVYKI 299


>gi|330718634|ref|ZP_08313234.1| carbamoyl-phosphate synthase large subunit [Leuconostoc fallax KCTC
           3537]
          Length = 1059

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G+ V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSLDFMERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   ++ ++     +  +P    
Sbjct: 89  TLGGQTGLNMAKDLSEAGILDALGIELLGTKLSAIEEAEDREEFKALMERLNEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  + K    +          +   Q+L+E+
Sbjct: 149 ATTLDEALAFADQHGYPVIVRPAYTLGGTGGGIAKDHVQLVEIATNGLDLSPVTQILVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +F    +          +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDSSDNALVVASMENFDPVGIHTGDSIVVAPVQTLSDRELQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        D  S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDTQSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 87/289 (30%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--------------AHLKPDLAFNVLHGNF 62
            A++ AG++          +  D S+   L                 KP        G  
Sbjct: 579 KAIQRAGYEAIVMNSNPETVSTDFSISDKLYFEPLTLEDVLNVTELEKPIGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A   +             PV  +       + S  
Sbjct: 639 AINLAEDLQNAGVKILGTTVEDLNRAEDREAFDQVIKDLKLPQPVGKTATTVAEALTSAD 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P        + ++  D  +   + ++   ++   +LI+ Y++G E    V+
Sbjct: 699 EIGYPVLIRPSYVLGGRAMEIVANDDELKDYMQRAVKVSNDHPVLIDSYLEGQEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  + +   P  +   +  E+   A    + +   G
Sbjct: 759 SDGETVVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQNEMVNAAINLAKRMRTIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+        + +E+N +   T     P ++        +L   
Sbjct: 816 LMNVQFVIHQ--NTAYVIEVNPRASRT----VPFISKVTHLPLAQLATR 858


>gi|149190658|ref|ZP_01868926.1| acetyl-CoA carboxylase subunit A [Vibrio shilonii AK1]
 gi|148835541|gb|EDL52510.1| acetyl-CoA carboxylase subunit A [Vibrio shilonii AK1]
          Length = 447

 Score = 54.1 bits (128), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   + + GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINSMKNAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDDDETKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELIEAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|298256323|gb|ADI71432.1| putative carbamoyl-phosphate synthase large subunit [Amycolatopsis
           orientalis subsp. vinearia]
          Length = 1104

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEFADATYIEPVTPDFVEKVIAAERPDAILA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G            + +L+   +    + I A     D+ + K +V + G  V  S +
Sbjct: 89  TLGGQTALNCAVALHERGVLDKYGVELIGADIDAIQRGEDRQKFKDIVRTIGAEVPRSRV 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      D+   +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CHDMAEVRDTVKELGLPVVIRPSFTMGGLGSGMAHTPEDLERLASTGLTESPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +  +  +      +          +        
Sbjct: 209 SVLGWKEYELELMRDKHDNVVVVCSIENVDAMGVHTGDSVTVAPTMTLTDREYQVMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREVGVDTGGCNIQFAINPEDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|301116928|ref|XP_002906192.1| carbamoyl-phosphate synthase [ammonia], putative [Phytophthora
           infestans T30-4]
 gi|262107541|gb|EEY65593.1| carbamoyl-phosphate synthase [ammonia], putative [Phytophthora
           infestans T30-4]
          Length = 1511

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/314 (12%), Positives = 95/314 (30%), Gaps = 48/314 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD--------------------------RSVGLVLAHLKP 51
           SG     AL++   +   I+ +                            V  V+   +P
Sbjct: 444 SGSQAIKALKEENIETILINPNIASVQTNIDRSSEAQASNVYYLPVNPDFVEQVIKREQP 503

Query: 52  DLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGV 105
           D     + G      G +   + + E   +    + I     + D+     K    +  +
Sbjct: 504 DGILISMGGQTALNCGMELDKRGVFEKYGVQVLGTQIDVINYTEDRELFNDKLAEINEKI 563

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               ++      + + + I  P +I+       LG  + +      L  +   +++   Q
Sbjct: 564 AQSEAVESVEDAVRAAYHIGFPVMIRSAFALGGLGSGICED--EAHLRTMAKQAFSGSPQ 621

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ + G                 + V   + +     ++  +        +    Y 
Sbjct: 622 ILVERSMKGW-KEVEYEVVRDAANNCLTVCNMENFDPLGIHTGESIVIAPSQTLSNREYH 680

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMA 278
            ++  A    + +G  G     +  +P S +   +E+N +  ++  S        +P   
Sbjct: 681 MLRETAVKVVRHLGIVGECNIQYALNPESEEYCIIEVNAR--LSRSSALASKATGYPLAF 738

Query: 279 AYA----GYSFREL 288
             A    G +  +L
Sbjct: 739 VAAKLALGINLPDL 752


>gi|156146816|gb|ABU53420.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 68/143 (47%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQDELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++  A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRHNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDR-GEIFLNE 146


>gi|109947274|ref|YP_664502.1| carbamoyl phosphate synthase large subunit [Helicobacter
           acinonychis str. Sheeba]
 gi|109714495|emb|CAJ99503.1| carbamoyl-phosphate synthase large chain [Helicobacter acinonychis
           str. Sheeba]
          Length = 1133

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/300 (11%), Positives = 89/300 (29%), Gaps = 29/300 (9%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G++V  I+ +                      ++  ++   K D    
Sbjct: 29  SGTQSCKTLKSLGYRVILINSNPATVMTDPEFSHKTYVQPITPENIATIIKKEKIDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSIL 112
            + G    + ++Q   + +       G    A+   + R     +   + +         
Sbjct: 89  TMGGQTALNVVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAY 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ +
Sbjct: 149 SELEALEAINEIGFPAMIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESL 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +  +       
Sbjct: 209 LGWKEYEMEVIRDGKDNCIIVCCIENIDPMGIHTGDSITIAPSLTLTDKEYQRMRDASFA 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 269 ILREIGVDTGGSNVQFAIHPETLRMVVVEMN--PRVSRSS--ALASKATGFPIAKVATML 324



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/252 (12%), Positives = 83/252 (32%), Gaps = 10/252 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           V  ++   + D    ++H        +   L  ++ P   +      ++ D+ +    + 
Sbjct: 673 VKTIIQREQVDGI--IVHFGGQTPLKLAKDLAKMQAPIIGTPFKVIDIAEDREKFSLFLK 730

Query: 102 SCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
              +    + +           +LI  P +++P        + +++  + +   L   + 
Sbjct: 731 DLDIKQPENGMAKNIDEAYSIANLIGFPIIVRPSYVLGGQHMQILENIEELHHYLESVTH 790

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                          +E    +  DA  D  E+ V     +  E    S +S   +P+ +
Sbjct: 791 SLEISPKNPLLIDKFLEKAIELDVDAICDKKEVYVAGILQHIEEAGIHSGDSACFIPSNL 850

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              I  E+++++      +G  G+    F        ++ +E+N +   T     P ++ 
Sbjct: 851 SPKILDEIEQVSAKIALHLGVVGLLNIQFAV--YKNALYLIEVNPRASRT----VPFLSK 904

Query: 280 YAGYSFRELLLW 291
             G    ++   
Sbjct: 905 ALGVPLAKVATR 916


>gi|83949733|ref|ZP_00958466.1| carbamoyl-phosphate synthase large subunit [Roseovarius nubinhibens
           ISM]
 gi|83837632|gb|EAP76928.1| carbamoyl-phosphate synthase large subunit [Roseovarius nubinhibens
           ISM]
          Length = 1113

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 94/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALAVADMGVLEKFGVELIGANREAIEMAEDRKLFREAMDRLGIENPRATI 148

Query: 113 VNRFTMDSQH---------------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     ++ +                I  P +I+P       G  V              
Sbjct: 149 VTAPKKENGNADLDAGVQIALEALEDIGLPAIIRPAFTLGGTGGGVAYNRDDYIHYCRTG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEFEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 101/316 (31%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   +         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALSDTGYETIMVNCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 634 RLYFEPLTFEHVMEILSTEQQNGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQDLVNRLGLKQPHNGIAHSDAEALAIADEIGFPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE     + D         +   +       
Sbjct: 754 MAQLERYIAEAVVVSGDSPVLLDGYLSGAIECDVDAICDGKDVHVAGIMQHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  DI   ++        A+   G+    F        ++ +E+N +
Sbjct: 811 HSGDSACSLPPYSLSQDIITRIEEQTRALALALNVVGLMNVQFAV--KGDDIYLIEVNPR 868

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 869 ASRT----VPFVAKAT 880


>gi|325093888|gb|EGC47198.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Ajellomyces capsulatus H88]
          Length = 1276

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 51/288 (17%), Positives = 98/288 (34%), Gaps = 44/288 (15%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--------------- 57
           E++L  G+  +      G +V+ +  D       A   P  AFN+               
Sbjct: 609 EIALRVGRTASQH----GIRVTTLYTDPDARAQHALSSP-FAFNLGETSAYLDGDRIIEI 663

Query: 58  --------LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                   +H   G   E+           + +      A     DK RSK+++++ GVP
Sbjct: 664 AQKEGCQGIHPGYGFLSENSAFAQKCTQAGLVFIGPPPKAIEAMGDKSRSKEIMTAAGVP 723

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----S 157
             P    +  +M+           P +IK +KGG   G+ +    ++    L+       
Sbjct: 724 CVPGYHGDNQSMEFLEAEAEKTKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAM 783

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +S+     L+ +       +   V  D   +   +            K    +    LP 
Sbjct: 784 NSFGDDTMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPE 843

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               DI+ + +  A      +G  G    +F+FD  + + F++E+N +
Sbjct: 844 ATRKDIWDKARAAALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 887


>gi|221126285|ref|XP_002164734.1| PREDICTED: similar to YALI0E07271p [Hydra magnipapillata]
 gi|260221606|emb|CBA30339.1| Urea amidolyase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 1203

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +I+ +  +             +      +++       
Sbjct: 147 AVRIGYPVMLKSTAGGGGIGMRLIRSEAEMGPAFEAVQRLARANFKDAGLFLEKFVERAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V          +  +       PA    +   + +Q  A    +A+ 
Sbjct: 207 HIEVQLFGDGQGTVVALGERDCSAQRRNQKVVEETPAPGLSEATRQALQDTAVRLARAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +++ D  +   ++LE+N +     G+T            G    +L+ WM++ 
Sbjct: 267 YRSAGTVEYVLDADTGAFYFLEVNTRLQVEHGVTE--------QVFGV---DLVAWMLKL 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|156146042|gb|ABU53082.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146046|gb|ABU53084.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146052|gb|ABU53087.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146036|gb|ABU53079.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146044|gb|ABU53083.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|150403262|ref|YP_001330556.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C7]
 gi|150034292|gb|ABR66405.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus
           maripaludis C7]
          Length = 494

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 74/231 (32%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFAEECNKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P       + D        I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKIAGVPVLPGREEPIESEDEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    +      V         ++          
Sbjct: 183 STKSIAQSAFGDSTVFIEKYLEKPRHIEIQIVADKFGNVIHLGDRECSIQRRHQKLIEES 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P   +  ++ + +   A  A +AI    +   +FL+   + + ++LE+N +
Sbjct: 243 PSPIMTEELRERMGNAAVKAAKAINYHSVGTVEFLY--SNGEFYFLEMNTR 291


>gi|117928505|ref|YP_873056.1| carbamoyl-phosphate synthase large subunit [Acidothermus
           cellulolyticus 11B]
 gi|117648968|gb|ABK53070.1| carbamoyl-phosphate synthase large subunit [Acidothermus
           cellulolyticus 11B]
          Length = 1093

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVILVNSNPATIMTDPEFADATYVEPITPEYVEKIIAKERPDALLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + I A     ++ R K++V S G     S +
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGADINAIQAGENRQRFKEIVESVGAENARSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P V++P       G  +    + +          +   ++L+E+
Sbjct: 149 CHSLEDCFAAVRDLGYPVVVRPSFTLGGAGSGIAYNAEDLERIAGAGLHASPTHEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +  P  +     +      +          +  K     
Sbjct: 209 SVLGWKEYELELMRDRNDNVVVVCPIENLDPMGVHTGDSITVAPALTLTDREYQKLRDIA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRAVGVDTGGCNIQFAVDPKTGRVIVIELN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|9988773|gb|AAG10785.1| carbamoyl phosphate synthetase II [Plasmodium berghei]
          Length = 1449

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 85/296 (28%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 446 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 505

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 506 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSMFAEKLKEINEIIAPYGS 565

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 566 AKNVEEAVEVANKIGYPILVRTTFSLGGLNSSFINNEEELVEK-CKEIFLQTDNEIFIDK 624

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +     +                 + Y + + +
Sbjct: 625 SLKGWKEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYE-YYKFREI 683

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 684 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 735


>gi|11995649|gb|AAF04494.2|AF157613_1 acetyl-CoA carboxylase 2 [Toxoplasma gondii]
          Length = 1102

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 64/253 (25%), Gaps = 19/253 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           A    L+    K   I       L L          +                  +   T
Sbjct: 301 AILQTLKR---KTIWIGPSPQAMLALGDKIGSAV--IAQSVNVPCVPWSGETRSPKRADT 355

Query: 81  HSGILASALSMDKMRSKQVVSSCGVP---------VCPSILVNRFTMDSQHLISPPYVIK 131
                            +      +                     +D    I  P +IK
Sbjct: 356 QPHSKTRRSISPPHFHTRESMHLSISVSKVFLTCLWTHFAFPLHQVLDCCAKIGYPVMIK 415

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVT 190
             +GG   GI  +   + +     Q  +   G  + + +   D   L   ++ D S    
Sbjct: 416 ASEGGGGKGIRRVTNAEEVADAYRQVVNEVKGSPVFVMRMVSDCRHLEVQLLADKSGRCV 475

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            +            K          P     ++  +++  A     A+G       +FL+
Sbjct: 476 SLGSRDCSIQRRCQKIIEEGPVVAAPP----EVVSQMEDAACRMAMAVGYENAGTCEFLY 531

Query: 251 DPLSRKVFWLEIN 263
           DP + +  +LE+N
Sbjct: 532 DPKTHQFAFLEVN 544


>gi|259015967|gb|ACV89266.1| putative CAD trifunctional protein [Tipula abdominalis]
          Length = 668

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 81  SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKVYFLPITPDYVEQVIKAERPDGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + ++     V    +
Sbjct: 141 TFGGQTALNCGIELERTKVFQRFGVKVLGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+  L+  P + +       LG         +   LL   +  H +QL+I++
Sbjct: 201 VYSVQEALDAAELLGYPVMARAAFSLGGLGSGFANNIDEL--KLLAQQALAHSNQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|159904998|ref|YP_001548660.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C6]
 gi|159886491|gb|ABX01428.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus
           maripaludis C6]
          Length = 497

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFAEECNKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P       + +        I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKIAGVPVLPGREEPIESEEEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    +      +         ++          
Sbjct: 183 STKSIAQSAFGDSTVFIEKYLEKPRHIEIQVVADKFGNIIHLGDRECSIQRRHQKLIEES 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P   +  ++ + +   A  A +AI    +   +FL+   + + ++LE+N +
Sbjct: 243 PSPIMTEELRERMGNAAVKAAKAINYHSVGTVEFLY--SNNEFYFLEMNTR 291


>gi|156146026|gb|ABU53074.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISNDVIAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711761|gb|ABR02307.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711823|gb|ABR02338.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKINDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|84393066|ref|ZP_00991832.1| acetyl-CoA carboxylase [Vibrio splendidus 12B01]
 gi|84376318|gb|EAP93200.1| acetyl-CoA carboxylase [Vibrio splendidus 12B01]
          Length = 447

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITSMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                   +         I  P +IK   GG   G+ V++ ++ +   +  +       +
Sbjct: 134 SDGPLDDDEVKNKAHAKRIGFPVIIKASGGGGGRGMRVVRTEKELTEAIAMTRAEAKACF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGDRCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|46128621|ref|XP_388864.1| hypothetical protein FG08688.1 [Gibberella zeae PH-1]
          Length = 714

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 71/219 (32%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A A    K RSK+++++  VP  P    
Sbjct: 117 ALHPGYGFLSENSKFAERCEEEGIVFVGPPATAMADMGHKARSKEIMTAANVPCVPGYHG 176

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I+ P ++K ++GG   G+ ++  ++     L  + +          
Sbjct: 177 ADQGEQELLEHAKKITFPVLLKSVRGGGGKGMRIVLTEEEFLTQLRSARAEAKASFGEGG 236

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DIYKE 226
           + +   +              +           +      +   +  +  P        +
Sbjct: 237 EVMLVEKYIIRPRHVEVQVFADKWGNTVALGERDCSIQRRHQKILEESPAPDLDLATRHD 296

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+G  G    +F+ D  + K +++E+N +
Sbjct: 297 LWDKARKAASAVGYVGAGTVEFILDKDTNKFYFMEMNTR 335


>gi|320107212|ref|YP_004182802.1| carbamoyl-phosphate synthase large subunit [Terriglobus saanensis
           SP1PR4]
 gi|319925733|gb|ADV82808.1| carbamoyl-phosphate synthase, large subunit [Terriglobus saanensis
           SP1PR4]
          Length = 1094

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 100/323 (30%), Gaps = 44/323 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPD----- 52
           G S+E +    SG     AL+  G++V  +         D + +    +  L P      
Sbjct: 21  GQSAEFD---YSGTQACKALKAEGYEVVLVNSNPASIMTDPEVADRTYIEPLTPRYVEEI 77

Query: 53  -----------------LAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSM 91
                                 + G    +  V      ILE   +    + + A   + 
Sbjct: 78  LRVESEMLVESGKPGVFAVLPTVGGQTALNLAVDLADTGILEKYNVELIGAKLDAIKKAE 137

Query: 92  DKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D++  K  ++  G+ +  S+     R  +D    I  P VI+P       G  +    + 
Sbjct: 138 DRLLFKDAMNKIGLDMPRSVLVNNLRDGLDFTQKIGFPAVIRPSFTLGGSGGGIAYNREE 197

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   L +    +   + L+E+ V G +     +     D   I     +F    +     
Sbjct: 198 LTEILARGLDLSPVGECLLEESVLGWKEYELEVVRDLADNVIIICSIENFDPMGVHTGDS 257

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +          +          +  +     G S   F  +P + ++  +E+N  P ++
Sbjct: 258 ITVAPAQTLTDREYQCMRDAAIRVIREIGVETGGSNVQFAVNPANGRMTVIEMN--PRVS 315

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
             S     +   G+   ++   +
Sbjct: 316 RSS--ALASKATGFPIAKIAARL 336



 Score = 39.1 bits (89), Expect = 0.83,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 94/294 (31%), Gaps = 35/294 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH---------------- 59
           AL + G++   +         D D S  L    L  +    V H                
Sbjct: 594 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLAVYHHEASSGAEIGMIVQFG 653

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G    +  +      + I  T    +  A    +            P           + 
Sbjct: 654 GQTPLNLSLPLKAAGVPIIGTSPESIDLAEDRKRFGKLIEELGIPQPQGAMATSIEEAIA 713

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               ++ P +++P        ++++  +  +   +  +  ++    +LI+ +++      
Sbjct: 714 GADRVTYPVLVRPSYVLGGRAMVIVYDEAGVRNYMSTAIEYSQERPVLIDHFLED---AT 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
            V  DA  D T++ +     +  E    S +S+ VLPA     ++  +++        A+
Sbjct: 771 EVDVDALCDGTDVVIAGIMQHIEEAGIHSGDSSCVLPAVDLSKEVLDQIRVYTRKLAMAL 830

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              G+    F       KVF +E+N +   T     P ++   G    ++   +
Sbjct: 831 SVIGLVNIQFAI--QRGKVFVIEVNPRASRT----VPYVSKATGVPLAKIASRL 878


>gi|284040085|ref|YP_003390015.1| acetyl-CoA carboxylase, biotin carboxylase [Spirosoma linguale DSM
           74]
 gi|283819378|gb|ADB41216.1| acetyl-CoA carboxylase, biotin carboxylase [Spirosoma linguale DSM
           74]
          Length = 447

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 52/148 (35%), Gaps = 10/148 (6%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
            +  P ++K   GG   G+ +++ +         + +     + +    L +   +   +
Sbjct: 150 EMGYPVIVKATAGGGGRGMRIVRSEDEFEKAWNDARTEAGAAFGNDGLYLEKFVEEPRHI 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++GD    V  ++           +             +  ++ +++   A    QA
Sbjct: 210 EIQIVGDQYGKVCHLSERDCSIQ----RRHQKLIEETPSPVVSPELREKMGAAAIKGAQA 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D      +++E+N +
Sbjct: 266 IGYEGAGTVEFLVDKH-GDFYFMEMNTR 292


>gi|255715439|ref|XP_002554001.1| KLTH0E12078p [Lachancea thermotolerans]
 gi|238935383|emb|CAR23564.1| KLTH0E12078p [Lachancea thermotolerans]
          Length = 1829

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/186 (10%), Positives = 54/186 (29%), Gaps = 20/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 771 AKKLEYPVMVKSTAGGGGIGLQKVDSEEDIERVFETVQHQGLAYFGDSGVFLERFVENAR 830

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +                L+  +       PA    +     +++ +      + 
Sbjct: 831 HVEIQLMGDGNGKAIAIGERDCSLQRRNQKVIEETPAPNLSEKTRMRMRKASESLGSLLN 890

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            R     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 891 YRCAGTVEFIYDEKRDEFYFLEVNAR----------LQVEHPITEMVTGL---DLVEWMI 937

Query: 294 EDASCL 299
             A+  
Sbjct: 938 LIAAGN 943


>gi|228921229|ref|ZP_04084558.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228838444|gb|EEM83756.1| Biotin carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   + +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRRAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|118444296|ref|YP_877026.1| biotin carboxylase [Clostridium novyi NT]
 gi|118134752|gb|ABK61796.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium novyi NT]
          Length = 447

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 75/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAQMCKECNIVFIGPDTKTMNNMGNKSKAREIMMKANVPIVPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  ++  +     I  P ++K   GG   GI ++K    +      +            
Sbjct: 137 NVETSKEALKEAERIGYPVMVKAAAGGGGRGIRIVKNSHELIKMFETAKREAEASFGDGS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++  +       P   +  ++  ++ 
Sbjct: 197 MYMEKFIENPKHVEFQILGDNCGNVVHLGERDCSIQRRNQKVLEETPCPIMTEELRNKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +G    +FL D  + + +++E+N +
Sbjct: 257 EVAIKAAKAVNYKGAGTIEFLLD-KNGEFYFMEMNTR 292


>gi|73748073|ref|YP_307312.1| pyruvate carboxylase subunit A [Dehalococcoides sp. CBDB1]
 gi|147668897|ref|YP_001213715.1| pyruvate carboxylase subunit A [Dehalococcoides sp. BAV1]
 gi|73659789|emb|CAI82396.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides sp.
           CBDB1]
 gi|146269845|gb|ABQ16837.1| pyruvate carboxylase subunit A [Dehalococcoides sp. BAV1]
          Length = 498

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 85/281 (30%), Gaps = 37/281 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
                 A  + G K   +  D                             + +  V    
Sbjct: 14  AIRVMRACRELGIKTVAVYSDADKGALFVKYADEAYHIGPSQLSESYLNIKKIVAVAKKS 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      LE   I +         L  +K+ +++ +   GVPV P
Sbjct: 74  GVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARREMKKAGVPVLP 132

Query: 110 SILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   ++        I  P +IKP  GG  +G+ V      +   +  S        
Sbjct: 133 GTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIESSQKVAGNTF 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            L E Y++        +    +  ++  +         ++          P   I  ++ 
Sbjct: 193 GLAEVYIEKYISNPRHIEIQIMGDSQGNIVYLGERECSIQRRYQKLIEESPSPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++  +A  A + +   G    +F+F   + + ++LE N +
Sbjct: 253 KKMGEVAVKAGKWVNYEGAGTIEFIF--SNGQFYFLEANTR 291


>gi|317479997|ref|ZP_07939111.1| carbamoyl-phosphate synthase [Bacteroides sp. 4_1_36]
 gi|316903835|gb|EFV25675.1| carbamoyl-phosphate synthase [Bacteroides sp. 4_1_36]
          Length = 1078

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIYTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    Q ++   V    S  
Sbjct: 88  AFGGQTALNCGVSLYKDKIFEKYGVTVLGTPVQAIIDTEDREIFVQKLNEIDVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENAADARRAAWELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP+S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPMSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|298482845|ref|ZP_07001028.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D22]
 gi|298271045|gb|EFI12623.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D22]
          Length = 1075

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEAARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DILVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|156146894|gb|ABU53459.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENHEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGIGLSRCDFFYTDR-GEIFLNE 146


>gi|49478295|ref|YP_036654.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar konkukian str. 97-27]
 gi|228915132|ref|ZP_04078729.1| Biotin carboxylase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
 gi|49329851|gb|AAT60497.1| propionyl-CoA carboxylase [Bacillus thuringiensis serovar konkukian
           str. 97-27]
 gi|228844561|gb|EEM89615.1| Biotin carboxylase [Bacillus thuringiensis serovar pulsiensis BGSC
           4CC1]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEIAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|301054084|ref|YP_003792295.1| acetyl-CoA carboxylase [Bacillus anthracis CI]
 gi|300376253|gb|ADK05157.1| acetyl-CoA carboxylase [Bacillus cereus biovar anthracis str. CI]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|295083895|emb|CBK65418.1| carbamoyl-phosphate synthase large subunit [Bacteroides
           xylanisolvens XB1A]
          Length = 1075

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEAARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DILVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|291295928|ref|YP_003507326.1| acetyl-CoA carboxylase biotin carboxylase [Meiothermus ruber DSM
           1279]
 gi|290470887|gb|ADD28306.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus ruber DSM
           1279]
          Length = 447

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 59/183 (32%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G  V++  + +     Q+              ++       
Sbjct: 147 AEQIGYPVLLKASAGGGGRGQKVVRSSEEMKTAFAQAQVEAQNYFSDPSLILEKYIELFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   +  V         ++  +       P+++   + +E+        + +  
Sbjct: 207 HVEVQVLGDGKGHVVHIGERDCSIQRRNQKLIEEAPSRLEEPLRQEILAAGVRLAKYVNY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
           +G    +F+ DP     +++E+N +              +      +G    +L+ W ++
Sbjct: 267 QGAGTLEFIVDP-DGNFYFMEMNTR----------IQVEHCVSEMISGL---DLVKWQIK 312

Query: 295 DAS 297
            A+
Sbjct: 313 IAA 315


>gi|253680897|ref|ZP_04861700.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           D str. 1873]
 gi|253562746|gb|EES92192.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           D str. 1873]
          Length = 1063

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ++++ G +   ++ +                      ++  ++   KP+    
Sbjct: 29  SGTQACKSIKEEGIETILVNSNPATIMTDLNIADKVYIEPLNVEAIEKIIQKEKPNGILA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  ++           +++   +   +  A   ++ +   +     +P    
Sbjct: 89  GFGGQTALNIAMELQEKGVLKKYNVKLLGINGEAIKKAEDREEFKDLMLQIGEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +  +   +       P +I+P       G  + +  +            +  +Q+L+EQ
Sbjct: 149 AVNIQECKEFVEKHGLPIIIRPAYTLGGTGGGIAETMEEYLKICNLGLKMSPINQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +     +                 + Y  ++  
Sbjct: 209 SVAGWKELEYEVIRDKKDNCIIICNMENIDPVGVHTGDSIVVAPSQTLTDRE-YHMLRNS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  DP+S K   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRSLKIEGGCNIQFALDPISNKYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 97/282 (34%), Gaps = 30/282 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFN----------VLHGNFGED 65
           A+ +AG++   +         D D S  L    L  D   N          +L       
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDISNKLYFESLYIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L    +    +   +  L+ D+ + ++++ S  +       +            
Sbjct: 640 INLAEKLSKRGVNILGTSFESIDLAEDREKFRELLESLNIKTPTGRPVTCIYEAYKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  D+  ++        +A+   G+
Sbjct: 760 DGEDVLMPGIMEHIERTG---VHSGDSITVYPYITLNEDVIDKLVENTKKIAKALKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               ++FD     ++ +E+N +   T     P ++   G   
Sbjct: 817 MNIQYVFDGKD--IYVIEVNPRASRT----VPILSKVTGVPM 852


>gi|237713570|ref|ZP_04544051.1| carbamyl phosphate synthetase [Bacteroides sp. D1]
 gi|262406333|ref|ZP_06082882.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_22]
 gi|294646577|ref|ZP_06724213.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CC 2a]
 gi|294806641|ref|ZP_06765475.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229446292|gb|EEO52083.1| carbamyl phosphate synthetase [Bacteroides sp. D1]
 gi|262355036|gb|EEZ04127.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_22]
 gi|292638100|gb|EFF56482.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CC 2a]
 gi|294446177|gb|EFG14810.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           xylanisolvens SD CC 1b]
          Length = 1075

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEAARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DILVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|229011800|ref|ZP_04168981.1| Biotin carboxylase [Bacillus mycoides DSM 2048]
 gi|228749431|gb|EEL99275.1| Biotin carboxylase [Bacillus mycoides DSM 2048]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|225864527|ref|YP_002749905.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB102]
 gi|229184775|ref|ZP_04311968.1| Biotin carboxylase [Bacillus cereus BGSC 6E1]
 gi|225786836|gb|ACO27053.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB102]
 gi|228598679|gb|EEK56306.1| Biotin carboxylase [Bacillus cereus BGSC 6E1]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|153806192|ref|ZP_01958860.1| hypothetical protein BACCAC_00447 [Bacteroides caccae ATCC 43185]
 gi|149130869|gb|EDM22075.1| hypothetical protein BACCAC_00447 [Bacteroides caccae ATCC 43185]
          Length = 1075

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKERPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + +LE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGVLEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQLN--ILVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|118477943|ref|YP_895094.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis str. Al Hakam]
 gi|118417168|gb|ABK85587.1| propionyl-CoA carboxylase [Bacillus thuringiensis str. Al Hakam]
          Length = 445

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEDTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|74316793|ref|YP_314533.1| phosphoribosylglycinamide formyltransferase 2 [Thiobacillus
           denitrificans ATCC 25259]
 gi|123773041|sp|Q3SKP9|PURT_THIDA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|74056288|gb|AAZ96728.1| phosphoribosylglycinamide formyltransferase 2 [Thiobacillus
           denitrificans ATCC 25259]
          Length = 398

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 76/274 (27%), Gaps = 26/274 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    +  ++   KP L    +
Sbjct: 23  GKEVIIALQRLGVEVVAVDRYEHAPGHQVAHRAHVIDMTDGAALRALIEAEKPLLVVPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L      L E+  T   +  +       R               +       
Sbjct: 83  EAIATEALLEIERAGLAEVIPTARAVNLTMNREGIRRLAAETLGLPTSPYAFVDSYAEMC 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   +  P ++KP+   S  G   +     +      +           I + V   + 
Sbjct: 143 AAAERLGYPVIVKPVMSSSGKGQSRVDDAGEMRAAWDYAVRGGRVDKGRFIVEGVIDFDY 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   +   +     +       L+          P  +     +  + +A      
Sbjct: 203 EITLLTVRARAASGAIETRFCAPIGHLQVKGDYVESWQPQAMSPTALERAREIAAAVTGE 262

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +G RG+   +         V++ E++ +P   GM
Sbjct: 263 LGGRGLFGVELFV--KGDTVWFSEVSPRPHDTGM 294


>gi|40204849|emb|CAF02025.1| D-alanine:D-alanine ligase [Streptococcus mitis B6]
 gi|156146018|gb|ABU53070.1| D-alanylalanine synthetase [Streptococcus mitis B6]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLNYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|121997210|ref|YP_001001997.1| pyruvate carboxylase [Halorhodospira halophila SL1]
 gi|121588615|gb|ABM61195.1| pyruvate carboxylase [Halorhodospira halophila SL1]
          Length = 1147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I++ + +   +L+            E Y++ +    
Sbjct: 150 WADEIGYPMMLKASWGGGGRGMRPIREPEELEARVLEGRREAEAAFGSGEGYLEKMIERA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   +         ++  +       PA    +    EV  L     + +
Sbjct: 210 RHVEVQVLGDTHGGLYHLFERDCTVQRRNQKVVERAPAPYLTEAQRAEVCDLGLKVARHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G +     +FL D  +   +++E+N +
Sbjct: 270 GYQNAGTVEFLMDMDTDTFYFIEVNPR 296


>gi|297180925|gb|ADI17129.1| biotin carboxylase [uncultured gamma proteobacterium HF0070_03O15]
          Length = 446

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 87/285 (30%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRS---------------------------VGLVLAHL 49
                 A ++ G++V+ +   VDR                            +       
Sbjct: 16  AIRALRAAKELGYEVASVYSTVDRDQKHLKLSDEAICIGPGPAKDSYLNEAAIIAAAELA 75

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  +   +G   E+             +         +  DK+++K++VSS G+P+ P
Sbjct: 76  NVDAIYPG-YGFLAENAAFAEKCNESGFKFIGPDPKVIEIMGDKIKAKELVSSLGIPIVP 134

Query: 110 SILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
               +  + +        I  P ++K   GG   G+ ++     +   ++ + +     +
Sbjct: 135 GYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSKDELWDSIVSAQNEAKLAF 194

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V GD       +            K         +P +  
Sbjct: 195 GDDKVFIEKYLSKPRHIEIQVFGDGKGKAVHLYSRDCSLQRKYQKILEEAPALNIPKEKL 254

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I          A + I   G    +FL+   + + F++E+N +
Sbjct: 255 DEIQNICV----RACKEINYEGAGTLEFLY--ENGQFFFIEMNTR 293


>gi|256379248|ref|YP_003102908.1| carbamoyl-phosphate synthase, large subunit [Actinosynnema mirum
           DSM 43827]
 gi|255923551|gb|ACU39062.1| carbamoyl-phosphate synthase, large subunit [Actinosynnema mirum
           DSM 43827]
          Length = 1099

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 89/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVSLVNSNPATIMTDPEFADATYVEPITAEFVEKVIAAERPDAVLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +       + +LE  ++    + I A     D+   K +V   G  V  S +
Sbjct: 89  TLGGQTALNTAIALHERGVLEKYDVELIGADIDAIQRGEDRQMFKDIVREIGAEVPRSAV 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CRTMDEVRATVADLGLPVVIRPSFTMGGLGSGMAHTPEQLERLAATGLAESPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +        
Sbjct: 209 SVLGWKEYELELMRDRNDNVVVICSIENIDPMGVHTGDSVTVAPAMTLTDREYQHMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIRAVGVDTGGCNIQFAIHPQTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|217976859|ref|YP_002361006.1| carbamoyl-phosphate synthase, large subunit [Methylocella
           silvestris BL2]
 gi|217502235|gb|ACK49644.1| carbamoyl-phosphate synthase, large subunit [Methylocella
           silvestris BL2]
          Length = 1107

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 89/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL   G+++  +         D D +    +  + P+                
Sbjct: 29  SGTQACKALRAEGYRIVLVNSNPATIMTDPDMADRTYIEPIVPEAVAKIIAKERYAAPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G              ILE  ++    +   A  ++ D+   ++ +S  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLKKMGILEQYDVEMIGASAEAIDMAEDRELFREAMSRIGLST 148

Query: 108 CPSILVNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +   +     +  I  P +I+P       G  +          + +    +   +
Sbjct: 149 PRSHQIKTLSQALAIIDDIGLPAIIRPSFTMGGTGGGIAYNKAEFIDIIERGIDASPTSE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLVEESVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPADGRMIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 41.4 bits (95), Expect = 0.16,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  D+  +++R       A+G  G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPRSLSPDMIAKLERQTRDLALALGVGGLMNVQYAL--KDGEIYVLEVNPRAART-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    ++   +
Sbjct: 886 --VPFVAKVIGVPIAKIAARI 904


>gi|154684738|ref|YP_001419899.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus
           amyloliquefaciens FZB42]
 gi|171854998|sp|A7Z0Z2|PURT_BACA2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|154350589|gb|ABS72668.1| PurT [Bacillus amyloliquefaciens FZB42]
          Length = 384

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 80/273 (29%), Gaps = 34/273 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +AV     S E         A  +A      K   ID+     V  V+   KPDL    +
Sbjct: 31  VAV----DSYEH------APAMQAA-----HKSYVIDMLDKAQVREVIEKEKPDLIVPEV 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ L         IP   +  L       +  + + +                  
Sbjct: 76  EAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLHLPT-AGYEFANTYEEFK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P V+KPL   S  G  V +    +               +   +  +G  + 
Sbjct: 135 EAAETIGFPCVVKPLMSSSGKGQSVCRSASGLKS--------CWDMAMEGGRVKNGRVI- 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V  ++  S+                  P  +     KE + +A  
Sbjct: 186 VEEFIPFESEITLLTVRAANGTSFCAPIGHEQKDGDYIESWQPHHMTEQQIKEAKHIAKS 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +G  G+   +        KV++ E++ +P
Sbjct: 246 ITDELGGYGLFGVELFLTE--DKVYFSEVSPRP 276


>gi|317477261|ref|ZP_07936498.1| carbamoyl-phosphate synthase [Bacteroides eggerthii 1_2_48FAA]
 gi|316906573|gb|EFV28290.1| carbamoyl-phosphate synthase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1101

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIHTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + I E   +    + + A   + D+    Q ++   V    S  
Sbjct: 88  AFGGQTALNCGVELYKEGIFEKYGVRVLGTPVQAIIDTEDREIFVQKLNEINVQTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|218131245|ref|ZP_03460049.1| hypothetical protein BACEGG_02851 [Bacteroides eggerthii DSM 20697]
 gi|217986547|gb|EEC52882.1| hypothetical protein BACEGG_02851 [Bacteroides eggerthii DSM 20697]
          Length = 1101

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIHTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + I E   +    + + A   + D+    Q ++   V    S  
Sbjct: 88  AFGGQTALNCGVELYKEGIFEKYGVRVLGTPVQAIIDTEDREIFVQKLNEINVQTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|156146038|gb|ABU53080.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146022|gb|ABU53072.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V   DFY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVDFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|153873458|ref|ZP_02002035.1| Phosphoribosylglycinamide formyltransferase 2 [Beggiatoa sp. PS]
 gi|152070079|gb|EDN67968.1| Phosphoribosylglycinamide formyltransferase 2 [Beggiatoa sp. PS]
          Length = 339

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/278 (13%), Positives = 84/278 (30%), Gaps = 33/278 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    A    G +V  +D                      +++  ++   +P     + 
Sbjct: 23  GKEMVIACTRLGIEVIAVDNVPNAPGHQIAYHSHVCDMNNAKALRELIIKEQPHFIVPIS 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                    V   +E            A +L++++   +Q+ +       P     R   
Sbjct: 83  ---KAIATDVLVEIEKTTSIKVIPTARAVSLALNRENLRQLATETLDLPTPRYAFARSYN 139

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           + Q  I+     P ++KP++  S  G  +I     + L    + + ++     +      
Sbjct: 140 ELQMQINRGVGYPCIVKPIQSSSGQGHSIINDPDDVKLAWNHAMNLSNDSCDAVIVEEFI 199

Query: 175 IE-LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  ++   + +               LK     +    P ++          +A  
Sbjct: 200 KFDYEITLLTVRAKNGEGDVETHFCEPIGYLKKDGYYTESWQPQRMTPTSLSHAHEMAQT 259

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             + +G  GI   +FL      +V++ E++  P   GM
Sbjct: 260 LTEHLGGCGIFGVEFLV--KGEQVWFNEVSPYPHYSGM 295


>gi|229631868|sp|A5H0J2|DUR1_SACKL RecName: Full=Urea amidolyase; AltName: Full=Pyrimidine-degrading
           protein 13,15; AltName: Full=Uracil catabolism protein
           3,5; Includes: RecName: Full=Urea carboxylase; Includes:
           RecName: Full=Allophanate hydrolase
 gi|98626707|gb|ABF58890.1| putative urea amidolyase [Lachancea kluyveri]
          Length = 1830

 Score = 54.1 bits (128), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 53/184 (28%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 771 ANKLEYPVMVKSTAGGGGIGLQKVDSENEIERVFETVQHQGKAYFGDSGVFLERFVENAR 830

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            +    +                L+  +       PA    +  +   R A       + 
Sbjct: 831 HVEIQMMGDGYGKAIAIGERDCSLQRRNQKIIEETPAPNLGETTRTKMRQAAESLGSLLK 890

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 891 YKCAGTVEFIYDERRDEFYFLEVNAR----------LQVEHPITEMVTGL---DLVEWML 937

Query: 294 EDAS 297
             A+
Sbjct: 938 RIAA 941


>gi|281207589|gb|EFA81772.1| dihydroorotase [Polysphondylium pallidum PN500]
          Length = 2189

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                      SV  V+ + KPD    
Sbjct: 426 SGSQAIKALKEEGIKTVLINPNIATVQTSPGLADKVYFLPVNADSVTKVIINEKPDGILV 485

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +      LE   +    + I     + D+    + +   +  +    +
Sbjct: 486 TFGGQTALNCGIELYKSGTLEKYGVKVLGTPIDTIIATEDRGIFAEKLEEINEHIAPSMA 545

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P +++       LG       + +   + ++ +     Q+LIE+
Sbjct: 546 CNTIEESLFQAERIGYPVIVRAAYCLGGLGSGFANNKEQLTSLVTEAFAT--SSQVLIEK 603

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 604 SLKGW-KEIEYEVLRDSHDNCITVCNMENFDPLGIHTGESIVVAPSQTLTDREYQMLREC 662

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P S +   +E+N +  ++  S     +   GY   
Sbjct: 663 AIKTVRHLGVVGECNIQYALNPDSEEYCIIEVNAR--LSRSS--ALASKATGYPLA 714


>gi|3821377|emb|CAA13255.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|107023257|ref|YP_621584.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia AU 1054]
 gi|116690340|ref|YP_835963.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           cenocepacia HI2424]
 gi|123072026|sp|Q1BUU4|PURT_BURCA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171855184|sp|A0K993|PURT_BURCH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|105893446|gb|ABF76611.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia AU 1054]
 gi|116648429|gb|ABK09070.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia cenocepacia HI2424]
          Length = 404

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/270 (14%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDPAALRAIVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSFEAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K D  +      +      +  ++++E +VD   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVKTDADVKPAWDYAMAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLDTRTYFCEPVGHVQVAGDYVESWQPQPMSAVALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|228908266|ref|ZP_04072111.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
 gi|228851307|gb|EEM96116.1| Biotin carboxylase [Bacillus thuringiensis IBL 200]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|228901096|ref|ZP_04065302.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
 gi|228965478|ref|ZP_04126564.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228794208|gb|EEM41726.1| Biotin carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228858547|gb|EEN03001.1| Biotin carboxylase [Bacillus thuringiensis IBL 4222]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|228985655|ref|ZP_04145808.1| Biotin carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228774050|gb|EEM22463.1| Biotin carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229017862|ref|ZP_04174745.1| Biotin carboxylase [Bacillus cereus AH1273]
 gi|229024065|ref|ZP_04180539.1| Biotin carboxylase [Bacillus cereus AH1272]
 gi|228737243|gb|EEL87764.1| Biotin carboxylase [Bacillus cereus AH1272]
 gi|228743453|gb|EEL93570.1| Biotin carboxylase [Bacillus cereus AH1273]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229030227|ref|ZP_04186284.1| Biotin carboxylase [Bacillus cereus AH1271]
 gi|228731071|gb|EEL81996.1| Biotin carboxylase [Bacillus cereus AH1271]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229060211|ref|ZP_04197580.1| Biotin carboxylase [Bacillus cereus AH603]
 gi|228719093|gb|EEL70705.1| Biotin carboxylase [Bacillus cereus AH603]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229076819|ref|ZP_04209729.1| Biotin carboxylase [Bacillus cereus Rock4-18]
 gi|228706308|gb|EEL58571.1| Biotin carboxylase [Bacillus cereus Rock4-18]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229085425|ref|ZP_04217666.1| Biotin carboxylase [Bacillus cereus Rock3-44]
 gi|228697901|gb|EEL50645.1| Biotin carboxylase [Bacillus cereus Rock3-44]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  T             ++  +       P+    +  ++    +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEATRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229097075|ref|ZP_04228042.1| Biotin carboxylase [Bacillus cereus Rock3-29]
 gi|229103135|ref|ZP_04233822.1| Biotin carboxylase [Bacillus cereus Rock3-28]
 gi|229116037|ref|ZP_04245431.1| Biotin carboxylase [Bacillus cereus Rock1-3]
 gi|228667432|gb|EEL22880.1| Biotin carboxylase [Bacillus cereus Rock1-3]
 gi|228680324|gb|EEL34514.1| Biotin carboxylase [Bacillus cereus Rock3-28]
 gi|228686361|gb|EEL40272.1| Biotin carboxylase [Bacillus cereus Rock3-29]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229133622|ref|ZP_04262449.1| Biotin carboxylase [Bacillus cereus BDRD-ST196]
 gi|228650022|gb|EEL06030.1| Biotin carboxylase [Bacillus cereus BDRD-ST196]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229156138|ref|ZP_04284236.1| Biotin carboxylase [Bacillus cereus ATCC 4342]
 gi|228627321|gb|EEK84050.1| Biotin carboxylase [Bacillus cereus ATCC 4342]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229161449|ref|ZP_04289430.1| Biotin carboxylase [Bacillus cereus R309803]
 gi|228621986|gb|EEK78831.1| Biotin carboxylase [Bacillus cereus R309803]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229170664|ref|ZP_04298308.1| Biotin carboxylase [Bacillus cereus AH621]
 gi|228612824|gb|EEK70005.1| Biotin carboxylase [Bacillus cereus AH621]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229173200|ref|ZP_04300749.1| Biotin carboxylase [Bacillus cereus MM3]
 gi|228610284|gb|EEK67557.1| Biotin carboxylase [Bacillus cereus MM3]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|229178866|ref|ZP_04306226.1| Biotin carboxylase [Bacillus cereus 172560W]
 gi|228604631|gb|EEK62092.1| Biotin carboxylase [Bacillus cereus 172560W]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|196043382|ref|ZP_03110620.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB108]
 gi|196025691|gb|EDX64360.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus 03BB108]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|218897498|ref|YP_002445909.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus G9842]
 gi|218543331|gb|ACK95725.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus G9842]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|206971422|ref|ZP_03232372.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH1134]
 gi|218231756|ref|YP_002367223.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           B4264]
 gi|228939661|ref|ZP_04102243.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228952870|ref|ZP_04114939.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228958776|ref|ZP_04120488.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228972522|ref|ZP_04133129.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228979132|ref|ZP_04139479.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|229070018|ref|ZP_04203294.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|229079714|ref|ZP_04212247.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|229150739|ref|ZP_04278953.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|229193928|ref|ZP_04320841.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|206733407|gb|EDZ50579.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH1134]
 gi|218159713|gb|ACK59705.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus B4264]
 gi|228589569|gb|EEK47475.1| Biotin carboxylase [Bacillus cereus ATCC 10876]
 gi|228632826|gb|EEK89441.1| Biotin carboxylase [Bacillus cereus m1550]
 gi|228703554|gb|EEL56007.1| Biotin carboxylase [Bacillus cereus Rock4-2]
 gi|228713119|gb|EEL65018.1| Biotin carboxylase [Bacillus cereus F65185]
 gi|228780607|gb|EEM28827.1| Biotin carboxylase [Bacillus thuringiensis Bt407]
 gi|228787205|gb|EEM35177.1| Biotin carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228800915|gb|EEM47820.1| Biotin carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228806826|gb|EEM53376.1| Biotin carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228819999|gb|EEM66042.1| Biotin carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326940252|gb|AEA16148.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar chinensis CT-43]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|196040278|ref|ZP_03107579.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus NVH0597-99]
 gi|206973755|ref|ZP_03234673.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus H3081.97]
 gi|217960000|ref|YP_002338556.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           AH187]
 gi|222096086|ref|YP_002530143.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           Q1]
 gi|229091538|ref|ZP_04222747.1| Biotin carboxylase [Bacillus cereus Rock3-42]
 gi|229139192|ref|ZP_04267767.1| Biotin carboxylase [Bacillus cereus BDRD-ST26]
 gi|229196722|ref|ZP_04323465.1| Biotin carboxylase [Bacillus cereus m1293]
 gi|196028763|gb|EDX67369.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus NVH0597-99]
 gi|206747911|gb|EDZ59300.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus H3081.97]
 gi|217067281|gb|ACJ81531.1| putative acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cereus AH187]
 gi|221240144|gb|ACM12854.1| propionyl-CoA carboxylase [Bacillus cereus Q1]
 gi|228586797|gb|EEK44872.1| Biotin carboxylase [Bacillus cereus m1293]
 gi|228644251|gb|EEL00508.1| Biotin carboxylase [Bacillus cereus BDRD-ST26]
 gi|228691832|gb|EEL45580.1| Biotin carboxylase [Bacillus cereus Rock3-42]
 gi|324326517|gb|ADY21777.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis serovar finitimus YBT-020]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|52142953|ref|YP_083876.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           E33L]
 gi|51976422|gb|AAU17972.1| propionyl-CoA carboxylase [Bacillus cereus E33L]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|42781610|ref|NP_978857.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           ATCC 10987]
 gi|42737533|gb|AAS41465.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Bacillus
           cereus ATCC 10987]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|163940315|ref|YP_001645199.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           weihenstephanensis KBAB4]
 gi|163862512|gb|ABY43571.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           weihenstephanensis KBAB4]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|116748123|ref|YP_844810.1| carbamoyl-phosphate synthase L chain, ATP-binding [Syntrophobacter
           fumaroxidans MPOB]
 gi|116697187|gb|ABK16375.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Syntrophobacter fumaroxidans MPOB]
          Length = 477

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/224 (16%), Positives = 78/224 (34%), Gaps = 21/224 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+ +         + +            +K+ +++++ + G+PV P   +
Sbjct: 76  AIHPGYGFLAENPMFSKKCTDAGLVFVGPPPQVIIDMGNKVVARRIMKNAGIPVIPGTDI 135

Query: 114 -------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
                   +  +D       P ++K + GG   GI V      +   L         ++ 
Sbjct: 136 LEEGELGEQDAVDFAEEYGFPIMVKAVAGGGGRGIRVATNVGELIKGLKMARSEARMAFG 195

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + D  L +   +   +   ++ D   DV  +            +        + PA +P 
Sbjct: 196 NDDIYLEKGLGNPRHVEVQIVADRFGDVIHLGTRNCSI-----QRRHQKMIEIAPASLPA 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           D+ + V R A  A +A         +FL D      ++LE+N +
Sbjct: 251 DLSENVCRTAVKAAKACNYVNAGTVEFLLDEADN-YYFLEVNTR 293


>gi|47570206|ref|ZP_00240859.1| propionyl-CoA carboxylase, alpha subunit [Bacillus cereus G9241]
 gi|47553112|gb|EAL11510.1| propionyl-CoA carboxylase, alpha subunit [Bacillus cereus G9241]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDDQKN-FYFLEMNTR 292


>gi|325299963|ref|YP_004259880.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           salanitronis DSM 18170]
 gi|324319516|gb|ADY37407.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           salanitronis DSM 18170]
          Length = 1074

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIRSVLINPNIATIQTSEGIADQVYFLPVTPHFVAEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G +      L+   +    + + A   + D+    + +    +      +
Sbjct: 87  AFGGQTALNCGTELYKNGTLKEYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPLKTPVSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P +I+       LG  +   +++     L  S++    Q+L+E+
Sbjct: 147 VENTKDAINAARSIGYPVMIRSAYALGGLGSGICPTEEAFIE--LAESAFTFSPQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +       +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTQAQVTMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     F F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SKQCVRHLGIVGECNIQFAFNADTDDYRIIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|319898970|ref|YP_004159063.1| Biotin carboxylase [Bartonella clarridgeiae 73]
 gi|319402934|emb|CBI76485.1| Biotin carboxylase [Bartonella clarridgeiae 73]
          Length = 452

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 94/285 (32%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G K   +    D D                       ++  +++  +  
Sbjct: 14  ALRILRACKELGIKTVAVHSTADADAMHVRLADESVCIGPPQSRDSYLNIYQIISACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     ILE   I +            DK+ +K+ V   G+P+ P
Sbjct: 74  GADAVHPG-YGFLSENAKFADILESHNITFIGPTAAHIRTMGDKIEAKKTVKKLGIPIVP 132

Query: 110 SILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                           + I  P +IK   GG   G+ V+  ++ + +    + S     +
Sbjct: 133 GSNEAIAEEEEALRIANEIGYPVIIKASAGGGGCGMKVVHSERKLLIAFKTARSEASAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N     + +       +   V+GD + +   +            ++  +      PA   
Sbjct: 193 NDDAVYIEKYLEKPRHIEIQVIGDGAGNAIHLGERDCSLQR---RHQKVWEEANSPALNE 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K    +A    + +G RG+   +FL+   + + +++E+N +
Sbjct: 250 TERKKIGNVVANACAK-LGYRGVGTVEFLY--ENGEFYFIEMNTR 291


>gi|225022575|ref|ZP_03711767.1| hypothetical protein CORMATOL_02615 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305680461|ref|ZP_07403269.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           matruchotii ATCC 14266]
 gi|224944698|gb|EEG25907.1| hypothetical protein CORMATOL_02615 [Corynebacterium matruchotii
           ATCC 33806]
 gi|305659992|gb|EFM49491.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           matruchotii ATCC 14266]
          Length = 408

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/277 (13%), Positives = 88/277 (31%), Gaps = 26/277 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V  +D                VD    ++V  ++ ++ P      +
Sbjct: 27  GKEVAIAFQRLGVEVHAVDRYENAPAHQVAHFAYKVDLTDGKAVAELVDYIDPHFIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  +   +    V             
Sbjct: 87  EEIATATLVELEDSGRTVVPTARATRLTMNRQRIRKLAAVEL-GLPVAAYWFADDFDDFR 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +      P ++KP+   S  G  V++ +  + L    + +    +++++E+++D     
Sbjct: 146 AAIRHAGFPCIVKPIMSTSGRGQTVVRSEDDVLLAWETAQTGGRPERVIVERFIDFDFEI 205

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++  +    T              + +S       P  +        + +A     A+
Sbjct: 206 TLLVVRSIDPTTGELATWFCEPIGHRQDASGYVESWQPMPLSPAALDSARSIAARITNAL 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GMTPVS 272
           G RG+   +        +V++ E++  P   GM  +S
Sbjct: 266 GGRGVFGVELFI--SGDEVYFSEVSPHPHDTGMVTLS 300


>gi|148711605|gb|ABR02229.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 40/143 (27%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A    +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETTFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711707|gb|ABR02280.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711753|gb|ABR02303.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKPENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY   N T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|154247430|ref|YP_001418388.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthobacter
           autotrophicus Py2]
 gi|154161515|gb|ABS68731.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthobacter
           autotrophicus Py2]
          Length = 452

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 80/256 (31%), Gaps = 25/256 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    I +         +  DK+ +K+   S G+PV P  
Sbjct: 76  DAVHPG-YGFLAENARFAEILADHNIHFIGPKAEHIRIMGDKIEAKKTAQSLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I  +         I  P ++K   GG   G+ V    + +   L  + +        
Sbjct: 135 DGGIHSDDEAHRVADEIGFPVLVKAAAGGGGRGMKVAMTKEDLSEALSTARNEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++    T   +    L   +            L+          P   I  +    
Sbjct: 195 DAVYLEKYLSTPRHIEVQVLGDGKGHAIHLGERDCSLQRRHQKVWEEAPSPVITPEQRAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
           +      A + +G  G+   +FL+   + + +++E+N       P         EM    
Sbjct: 255 IGETCAKAMRDLGYLGVGTIEFLY--ENGEFYFIEMNTRIQVEHP-------VTEM--VT 303

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+   +  A+
Sbjct: 304 GI---DLINEQIRVAA 316


>gi|322514109|ref|ZP_08067179.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus ureae
           ATCC 25976]
 gi|322120039|gb|EFX92015.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus ureae
           ATCC 25976]
          Length = 393

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/299 (14%), Positives = 80/299 (26%), Gaps = 36/299 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENPPAQQVAHRSYTISMLDGAALRALVEQEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYFFVDNFDDFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I        S   G        V+G    
Sbjct: 143 KAVVEIGLPCVVKPIMSSSGHGQSVIKSEDQIQQA--WDYSQEGGRAGSGRVIVEGFIKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 +          P  +     K  Q  A     A+
Sbjct: 201 DYEITQLTVRHVNG--TSFLAPIGHRQEDGDYRESWQPQAMSELALKRAQETAERITTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFREL 288
           G RGI   +        ++ + E++ +P   GM       +S F   A    G    E+
Sbjct: 259 GGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLPIPEI 315


>gi|3821342|emb|CAA13245.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|19351919|emb|CAD19596.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|19351921|emb|CAD19597.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|123204379|gb|ABM73540.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711603|gb|ABR02228.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|20090986|ref|NP_617061.1| carbamoyl phosphate synthase large subunit [Methanosarcina
           acetivorans C2A]
 gi|22095502|sp|Q8TNY4|CARB_METAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|19916073|gb|AAM05541.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Methanosarcina acetivorans C2A]
          Length = 1070

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 94/298 (31%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D S  L            V+   +PD       G   
Sbjct: 574 ALREEGIETHIINNNPETVSTDFDTSDKLFFEPLTMEYVMNVIERERPDGVLVQFGGQTS 633

Query: 64  EDGLVQAILELLEI-----PYTHSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF 116
            +  +    EL            +      L+ D+ +   ++   G+             
Sbjct: 634 VNLALPLKKELKRRTDLDTMIMGTDPEDMDLAEDREKFYVLMQKFGILQPEGGYATSQHE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
            ++    I  P +++P        + ++  +  +   + ++   +    +LI+ +++G  
Sbjct: 694 AIEVAQRIGFPVLVRPSYVLGGRAMEIVYDEIDLERYMKEAVRVSPEHPILIDDFLEGAC 753

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+    + D    +    +   +       +S  ++  + P  +  D+  +V+       
Sbjct: 754 EIDVDAVCDRKDVLIGAIMEHIEEAG---VHSGDSACVIPPQSLSEDVLAQVRDYTRKIA 810

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +  +G+            KVF LE N +   T     P ++   G    ++   ++
Sbjct: 811 LGLRVKGLINIQM--AEKGGKVFVLEANPRSSRT----IPFVSKAVGLPLAKIAARVI 862



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ +                     R V  ++   +PD    
Sbjct: 29  SGSQACRSLKEEGVQVVLVNSNPATIMTDPEMADSVYIEPLDARIVEKIIEKERPDGIIA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +         + E   +    + + A   + D+   K+ +      VP   +
Sbjct: 89  GIGGQTGLNITSELAEMGVFEKYGVQILGTPVEAIKNTEDRELFKETMLRIGEKVPQSRA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   +    +  P +++P       G  + +  + +     +    +   Q+LIE+
Sbjct: 149 VHTLKEAEEVVEELGLPLIVRPAYTLGGAGGGIARTKEELLEITERGLRRSRISQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G             + T I +   +       ++  ++       +    ++ ++  
Sbjct: 209 SVLGW-AEVEYEVMRDANDTCIVICNMENIDPMGVHTGESAVVAPSQTLTDAEHQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     +       ++   E+N  P ++  S     +   GY    +  
Sbjct: 268 SIKIIRALKIEGGCNIQYALKEGDYRIV--EVN--PRVSRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|156146904|gb|ABU53464.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V   E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENKEELHQALELAF--KYDSRVLVEQGVSAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY YE KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKISDDVVAIMRKNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +   + +VF  E
Sbjct: 125 GGLGLSRCDFFYT-YNGEVFLNE 146


>gi|6634607|emb|CAB64494.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|145294862|ref|YP_001137683.1| pyruvate carboxylase [Corynebacterium glutamicum R]
 gi|20531757|gb|AAM27458.1|AF503915_1 pyruvate carboxylase [Corynebacterium crenatum]
 gi|50428375|dbj|BAD30009.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|140844782|dbj|BAF53781.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1140

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G     +K D  +   +G   E+  +        I +         L+ DK R
Sbjct: 72  LDIDEIIGAA-KKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129

Query: 96  SKQVVSSCGVP---VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P              + S    + P  +K + GG   G+  +     +  
Sbjct: 130 AVTAAKKAGLPVLAESTPSKNIDDIVKSAEGQTYPIFVKAVAGGGGRGMRFVSSPDELRK 189

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L      V         L+       
Sbjct: 190 LATEASREAEAAFGDGSVYVERAVINPQHIEVQILGDRTGEVVHLYERDCSLQRRHQKVV 249

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    ++   +   A    ++IG +G    +FL D     V ++E+N +
Sbjct: 250 EIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHV-FIEMNPR 302


>gi|313245309|emb|CBY40078.1| unnamed protein product [Oikopleura dioica]
          Length = 431

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 27/188 (14%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
            I  P ++K + GG   G+ +   +      L  +       +     L+ +   D   +
Sbjct: 162 KIGFPVMLKAIMGGGGKGMRICMNEGEFQAQLDSARREALQGFGDDRMLVEKFVEDPRHV 221

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD   D   +            +             I  D  + +   A  A +A
Sbjct: 222 EVQVFGDNYGDAVYLYERDCSVQ----RRHQKVLEEAPAPGISWDTRRAIGEAAVRAAKA 277

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G    +F+ D      +++E+N       P         EM      + ++L+ W 
Sbjct: 278 VNYSGAGTVEFIMDKHEN-FYFMEMNTRLQVEHP-------VSEM-----ITGQDLVEWQ 324

Query: 293 VEDASCLR 300
           +  A   +
Sbjct: 325 IRVARGEK 332


>gi|313234887|emb|CBY24832.1| unnamed protein product [Oikopleura dioica]
          Length = 667

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 27/188 (14%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
            I  P ++K + GG   G+ +   +      L  +       +     L+ +   D   +
Sbjct: 162 KIGFPVMLKAIMGGGGKGMRICMNEGEFQAQLDSARREALQGFGDDRMLVEKFVEDPRHV 221

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD   D   +            +             I  D  + +   A  A +A
Sbjct: 222 EVQVFGDNYGDAVYLYERDCSVQ----RRHQKVLEEAPAPGISWDTRRAIGEAAVRAAKA 277

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G    +F+ D      +++E+N       P         EM      + ++L+ W 
Sbjct: 278 VNYSGAGTVEFIMDKHEN-FYFMEMNTRLQVEHP-------VSEM-----ITGQDLVEWQ 324

Query: 293 VEDASCLR 300
           +  A   +
Sbjct: 325 IRVARGEK 332


>gi|297181499|gb|ADI17686.1| biotin carboxylase [uncultured gamma proteobacterium HF0130_23I23]
          Length = 446

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 88/285 (30%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRS---------------------------VGLVLAHL 49
                 A ++ G++V+ +   VDR                            +       
Sbjct: 16  AIRALRAAKELGYEVASVYSTVDRDQKHLKLSDEAICIGPGPAKDSYLNEAAIIAAAELA 75

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  +   +G   E+             +         +  DK+++K++VSS G+P+ P
Sbjct: 76  NVDAIYPG-YGFLAENAAFAEKCNESGFKFIGPDPKVIEIMGDKIKAKELVSSLGIPIVP 134

Query: 110 SILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
               +  + +        I  P ++K   GG   G+ ++  +  +   ++ + +     +
Sbjct: 135 GYSGDIQSNEQIRSIVKEIGYPVIVKATSGGGGKGMRIVNSEDELWDSIVSAQNEAKLAF 194

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V GD       +            K         +P +  
Sbjct: 195 GDDKVFIEKYLSKPRHIEIQVFGDGKGKAVHLYSRDCSLQRKYQKILEEAPALNIPKEKL 254

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I          A + I   G    +FL+   + + F++E+N +
Sbjct: 255 DEIQNICV----RACKEINYEGAGTLEFLY--ENGQFFFIEMNTR 293


>gi|209965305|ref|YP_002298220.1| carbamoyl-phosphate synthase, large subunit [Rhodospirillum
           centenum SW]
 gi|209958771|gb|ACI99407.1| carbamoyl-phosphate synthase, large subunit [Rhodospirillum
           centenum SW]
          Length = 1095

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  VL   +PD    
Sbjct: 29  SGVQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPAMVAKVLERERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+ L +    +     A + D++  ++ +   G+    S L
Sbjct: 89  TMGGQTALNTALALFKDGTLDRLGVEMIGAKADVIAKAEDRLLFREAMDKIGLESPRSRL 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V  +    + L     P +I+P    +  G  +          +      +   ++LIE+
Sbjct: 149 VKTYDEALEALAFVGLPAIIRPSFTLAGTGGGIAFNRVEFEEIVKGGLRASPVGEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +  +  +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDSRDNCIIVCSIENIDAMGVHTGDSMTVAPALTLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREIGVDTGGSNVQFAVCPDTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 42.6 bits (98), Expect = 0.066,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              I  P VI+P        + ++     +   +  +   +  + +LI+ Y  D IE+  
Sbjct: 716 AREIGFPVVIRPSYVLGGRAMEIVHDLAGLHRYIHTAVKVSGRNPVLIDSYLQDAIEVDV 775

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +           ++  + P  +P  +  E+        + +G
Sbjct: 776 DAVSDGKTVYVAGIMEHIEEAGIHSG---DSACALPPYTLPKPVVDELAAQTVKLAKGLG 832

Query: 240 CRGISRSDFLF--------DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F          D     V+ LE+N +   T     P +A   G +  ++   
Sbjct: 833 VVGLMNVQFAVKQSAPGEGDATGFDVYILEVNPRASRT----VPFVAKATGTAIAKVAAR 888

Query: 292 M 292
           +
Sbjct: 889 I 889


>gi|171690368|ref|XP_001910109.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945132|emb|CAP71243.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1034

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H KPD  + 
Sbjct: 460 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIIHEKPDAIYC 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 520 TFGGQTALSVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAN 579

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L S ++    Q+LIE+ +
Sbjct: 580 NLEEAMHVVKDIGFPVIVRAAYALGGLGSGFANNEDELRE--LCSKAFAASPQVLIERSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDCQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 746


>gi|148711511|gb|ABR02182.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711513|gb|ABR02183.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711515|gb|ABR02184.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711529|gb|ABR02191.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711533|gb|ABR02193.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711535|gb|ABR02194.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711537|gb|ABR02195.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711539|gb|ABR02196.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711541|gb|ABR02197.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711543|gb|ABR02198.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711545|gb|ABR02199.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711547|gb|ABR02200.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711557|gb|ABR02205.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711579|gb|ABR02216.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711581|gb|ABR02217.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711583|gb|ABR02218.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711585|gb|ABR02219.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|45357904|ref|NP_987461.1| pyruvate carboxylase subunit A [Methanococcus maripaludis S2]
 gi|45047464|emb|CAF29897.1| pyruvate carboxylase subunit A [Methanococcus maripaludis S2]
          Length = 501

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 75/231 (32%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKAGVDAVHPG-YGFLSENVKFADECHKRGIEFIGPPTNAIDVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + GVPV P    +  + +        I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKTAGVPVLPGREESIESEEEAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELVDTIQ 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    +      V         ++          
Sbjct: 183 STKSIAQSAFGDSTVFIEKYLEKPRHIEIQVVADKFGNVIHLGDRECSIQRRHQKLIEES 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P   +  ++ + +   A  A +AI    +   +FL+     + ++LE+N +
Sbjct: 243 PSPIMTEELRERMGNAAVKAAKAINYHSVGTVEFLY--SKGEFYFLEMNTR 291


>gi|300867674|ref|ZP_07112319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oscillatoria sp.
           PCC 6506]
 gi|300334257|emb|CBN57491.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oscillatoria sp.
           PCC 6506]
          Length = 451

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I    +I +      A     DK  +K+ +   GVP  P     +   
Sbjct: 83  YGFLAENAKFAEICADHQITFVGPSPEAMRSMGDKSTAKETMQRVGVPTVPGSGGLLKDE 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ +++++  +P  L  +             Y++ 
Sbjct: 143 TEAIAIAREIGYPVMIKATAGGGGRGMRLVREECELPKLLAAAQGEADAAFGNPGIYLEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +    L  +   V         ++          P+      + +++   A  
Sbjct: 203 FIECPRHIEIQILADSHGNVIHLGERDCSIQRRHQKLLEEAPSPALTPKLREKMGHAAVK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A ++I   G    +FL D  S K +++E+N +
Sbjct: 263 AAKSINYTGAGTVEFLLD-KSGKFYFMEMNTR 293


>gi|299132014|ref|ZP_07025209.1| carbamoyl-phosphate synthase, large subunit [Afipia sp. 1NLS2]
 gi|298592151|gb|EFI52351.1| carbamoyl-phosphate synthase, large subunit [Afipia sp. 1NLS2]
          Length = 1109

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL++ G++V  +         D D +    +  + P++               
Sbjct: 29  SGTQAVKALKEEGYRVVLVNSNPATIMTDPDLADATYIEPITPEIVAKIIEKERHVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G            Q  L+  ++    +   A   + D+ R ++ +   G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKQGTLDKFDVEMIGATADAIDKAEDRGRFREAMDKIGLES 148

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             SI        + +   I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PRSIQTKTLPDALRALEEIGLPAIIRPSFTMGGTGGGIAYTKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESVLGWKEFEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFGVNPADGRMVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 39.5 bits (90), Expect = 0.55,   Method: Composition-based stats.
 Identities = 11/81 (13%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +      E++R        +   G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPHSLDAATIAELERQTRELALGLDVVGLMNVQYAI--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    ++   +
Sbjct: 886 --VPFVAKVVGLPVAKIAARI 904


>gi|269958563|ref|YP_003328350.1| carbamoyl phosphate synthase large subunit [Anaplasma centrale str.
           Israel]
 gi|269848392|gb|ACZ49036.1| carbamoyl phosphate synthase large subunit [Anaplasma centrale str.
           Israel]
          Length = 1102

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  ++ + +                     +  ++   KP+    
Sbjct: 29  SGTQACKVLKSEGYRIVLVNSNPATIMTDPGLADATYIEPITAEIIERIILKEKPNAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+   ++ V   G     S +
Sbjct: 89  TVGGQTALNVAMELVDRGVLSRNGVEMIGANQDAIRKAEDRSLFRKAVERVGAKCPKSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +Q +     P VI+P      +G  + + ++     + +  + +   ++ +++
Sbjct: 149 LKASDHIAQAMEYVGLPAVIRPSFTLGGIGGGIARTEEEFCEAVQRGFAMSPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPAITLRDEEYQRMRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPECEGEMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + V++ +Q++   L +         LLI+++  D  E+  
Sbjct: 711 AQRVGFPVLLRPSYVLGGQFMSVVRTEQALATYLREHDKIFDSGSLLIDKFLTDAAEVDV 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  +    V +       A+ 
Sbjct: 771 DAICDGNQVYIAGIMEHIEEAGIHSG---DSACSLPPYTLGENTIALVSQYTRQVALALN 827

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    +       +V+ LE N +   T     P +A   G    +L
Sbjct: 828 VRGLLNIQYAI--QDGEVYLLEANPRASRT----VPFVAKATGVPVAKL 870


>gi|255003375|ref|ZP_05278339.1| carbamoyl phosphate synthase large subunit [Anaplasma marginale
           str. Puerto Rico]
          Length = 1116

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  ++ + +                     +  ++   KP+    
Sbjct: 29  SGTQACKVLKSEGYRIVLVNSNPATIMTDPGLADATYIEPITAEIIERIILKEKPNAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+   ++ V   G     S +
Sbjct: 89  TVGGQTALNVAMELVDRGVLSRNGVEMIGANQDAIRKAEDRSLFRKAVERVGAKCPKSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +Q +     P VI+P      +G  + + ++     + +  + +   ++ +++
Sbjct: 149 LKASDHIAQAMEYVGLPAVIRPSFTLGGIGGGIARTEEEFCEAVQRGFAMSPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPAITLRDEEYQRMRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPECEGEMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + V++ +Q++   L +         LLI+++  D  E+  
Sbjct: 711 AQRVGFPVLLRPSYVLGGQFMSVVRTEQALATYLREHDKIFDSGSLLIDKFLTDAAEVDV 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  +    V +       A+ 
Sbjct: 771 DAICDGNQVYIAGIMEHIEEAGIHSG---DSACSLPPYTLGENTIALVSQYTRQVALALN 827

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    +       +V+ LE N +   T     P +A   G    +L
Sbjct: 828 VRGLLNIQYAI--QDGEVYLLEANPRASRT----VPFVAKATGVPVAKL 870


>gi|254995200|ref|ZP_05277390.1| carbamoyl phosphate synthase large subunit [Anaplasma marginale
           str. Mississippi]
          Length = 1101

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  ++ + +                     +  ++   KP+    
Sbjct: 29  SGTQACKVLKSEGYRIVLVNSNPATIMTDPGLADATYIEPITAEIIERIILKEKPNAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+   ++ V   G     S +
Sbjct: 89  TVGGQTALNVAMELVDRGVLSRNGVEMIGANQDAIRKAEDRSLFRKAVERVGAKCPKSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +Q +     P VI+P      +G  + + ++     + +  + +   ++ +++
Sbjct: 149 LKASDHIAQAMEYVGLPAVIRPSFTLGGIGGGIARTEEEFCEAVQRGFAMSPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPAITLRDEEYQRMRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPECEGEMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + V++ +Q++   L +         LLI+++  D  E+  
Sbjct: 711 AQRVGFPVLLRPSYVLGGQFMSVVRTEQALATYLREHDKIFDSGSLLIDKFLTDAAEVDV 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  +    V +       A+ 
Sbjct: 771 DAICDGNQVYIAGIMEHIEEAGIHSG---DSACSLPPYTLGENTIALVSQYTRQVALALN 827

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    +       +V+ LE N +   T     P +A   G    +L
Sbjct: 828 VRGLLNIQYAI--QDGEVYLLEANPRASRT----VPFVAKATGVPVAKL 870


>gi|229591813|ref|YP_002873932.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens SBW25]
 gi|229363679|emb|CAY51041.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           protein [Pseudomonas fluorescens SBW25]
          Length = 627

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 59/187 (31%), Gaps = 21/187 (11%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P +IK   GG   G+ ++   + +  +L  + S         E  ++   +
Sbjct: 147 QQEAERIGYPLMIKASAGGGGRGMRLVHHAKDLLNNLQTARSEAKNAFGSDELILEHALI 206

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQ 236
               +       +   +         ++          P   +  ++   +   A  A +
Sbjct: 207 DPRHVEIQLFGDSHGHLIYLGERDCSIQRRHQKVIEEAPCPIMTPELRLAMGEAALKAGR 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLL 290
           A+   G    +FL D    + ++LE+N +              +       G    +L+ 
Sbjct: 267 AVNYVGAGTVEFLLDRH-GQFYFLEMNTR----------LQVEHPVTELITGL---DLVD 312

Query: 291 WMVEDAS 297
           W ++ A+
Sbjct: 313 WQLQIAA 319


>gi|222475390|ref|YP_002563807.1| carbamyl-phosphate synthase, large subunit (carB) [Anaplasma
           marginale str. Florida]
 gi|222419528|gb|ACM49551.1| carbamyl-phosphate synthase, large subunit (carB) [Anaplasma
           marginale str. Florida]
          Length = 1101

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  ++ + +                     +  ++   KP+    
Sbjct: 29  SGTQACKVLKSEGYRIVLVNSNPATIMTDPGLADATYIEPITAEIIERIILKEKPNAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+   ++ V   G     S +
Sbjct: 89  TVGGQTALNVAMELVDRGVLSRNGVEMIGANQDAIRKAEDRSLFRKAVERVGAKCPKSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +Q +     P VI+P      +G  + + ++     + +  + +   ++ +++
Sbjct: 149 LKASDHIAQAMEYVGLPAVIRPSFTLGGIGGGIARTEEEFCEAVQRGFAMSPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPAITLRDEEYQRMRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPECEGEMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + V++ +Q++   L +         LLI+++  D  E+  
Sbjct: 711 AQRVGFPVLLRPSYVLGGQFMSVVRTEQALATYLREHDKIFDSGSLLIDKFLTDAAEVDV 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  +    V +       A+ 
Sbjct: 771 DAICDGNQVYIAGIMEHIEEAGIHSG---DSACSLPPYTLGENTIALVSQYTRQVALALN 827

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    +       +V+ LE N +   T     P +A   G    +L
Sbjct: 828 VRGLLNIQYAI--QDGEVYLLEANPRASRT----VPFVAKATGVPVAKL 870


>gi|56417022|ref|YP_154096.1| carbamoyl phosphate synthase large subunit [Anaplasma marginale
           str. St. Maries]
 gi|56388254|gb|AAV86841.1| carbamyl-phosphate synthase, large subunit [Anaplasma marginale
           str. St. Maries]
          Length = 1102

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 30/303 (9%), Positives = 95/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  G+++  ++ + +                     +  ++   KP+    
Sbjct: 29  SGTQACKVLKSEGYRIVLVNSNPATIMTDPGLADATYIEPITAEIIERIILKEKPNAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +    + +L    +    +   A   + D+   ++ V   G     S +
Sbjct: 89  TVGGQTALNVAMELVDRGVLSRNGVEMIGANQDAIRKAEDRSLFRKAVERVGAKCPKSTI 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +Q +     P VI+P      +G  + + ++     + +  + +   ++ +++
Sbjct: 149 LKASDHIAQAMEYVGLPAVIRPSFTLGGIGGGIARTEEEFCEAVQRGFAMSPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIIGWKEFEMEVMRDCRDNCIVVCSIENIDPMGVHTGDSITVAPAITLRDEEYQRMRNVS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P    ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 FDILREIGVETGGSNVQFAVNPECEGEMVVIEMN--PRVSRSS--ALASKATGFPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 39.9 bits (91), Expect = 0.49,   Method: Composition-based stats.
 Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + V++ +Q++   L +         LLI+++  D  E+  
Sbjct: 711 AQRVGFPVLLRPSYVLGGQFMSVVRTEQALATYLREHDKIFDSGSLLIDKFLTDAAEVDV 770

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           ++  + P  +  +    V +       A+ 
Sbjct: 771 DAICDGNQVYIAGIMEHIEEAGIHSG---DSACSLPPYTLGENTIALVSQYTRQVALALN 827

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            RG+    +       +V+ LE N +   T     P +A   G    +L
Sbjct: 828 VRGLLNIQYAI--QDGEVYLLEANPRASRT----VPFVAKATGVPVAKL 870


>gi|156146006|gb|ABU53064.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|118591046|ref|ZP_01548446.1| carbamoyl-phosphate synthase large subunit [Stappia aggregata IAM
           12614]
 gi|118436568|gb|EAV43209.1| carbamoyl-phosphate synthase large subunit [Stappia aggregata IAM
           12614]
          Length = 1120

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/320 (11%), Positives = 87/320 (27%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIILVNSNPATIMTDPDLADATYIEPITPELVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS----------- 101
            + G        D     +LE   +    +       + D+ + +  +            
Sbjct: 89  TMGGQTALNCALDLEQMGVLEKYGVEMIGARADVIEKAEDREKFRAAMDVIGLENPRAAI 148

Query: 102 ---------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                    +  +            M +   I  P +I+P       G  V    +    
Sbjct: 149 ASSPAIHDENGRIVGYDRNAGYLEAMRAIDEIGLPAIIRPAFTLGGTGGGVAYNREEYET 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q+LI++ + G +     +     D   I     +     +      + 
Sbjct: 209 IVRSGIDASPVGQVLIDESLLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  +P + ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRDASIAVLREIGVETGGSNVQFAVNPDNGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344



 Score = 36.4 bits (82), Expect = 5.9,   Method: Composition-based stats.
 Identities = 14/81 (17%), Positives = 32/81 (39%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  D+ +E++R       A+   G+    +     + ++F LE+N +   T  
Sbjct: 843 CSLPPFSLGEDMLEELKRQTKALALALEVGGLMNVQYAI--KNGEIFVLEVNPRASRT-- 898

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    ++   +
Sbjct: 899 --VPFVAKTIGVPVAKIASRI 917


>gi|78776234|ref|YP_392549.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurimonas
           denitrificans DSM 1251]
 gi|123754761|sp|Q30UL7|PURT_SULDN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|78496774|gb|ABB43314.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurimonas
           denitrificans DSM 1251]
          Length = 387

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 23  GREVAIEAQRLGLEVIAVDRYQNAPAHSVAHRSYVVNMQDKDALLEIIYREKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D L +A  +   +    + +  +    +       V          +      +
Sbjct: 83  E-AISIDALFEAEDKGYNVIPNANAVSKTMNRKNIRTFAAEVLELKTGAYEFVTTKEMLV 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P VIKP+   S  G  V +    I      +         LI +     +  
Sbjct: 142 SAAGRLGFPCVIKPVMSSSGHGQSVARSASDIDASWEIAKEARGDASELIVEAFVDFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++     +  + +A      +
Sbjct: 202 ITMLTARNGKETVFCEPIGH-----EQRDGDYVFSWQPMQMSEIAKQRAEDMAKKITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G RG+   +        +V++ E++ +P   GM
Sbjct: 257 GGRGLFGVELFI--KGDEVYFSEVSPRPHDTGM 287


>gi|254227632|ref|ZP_04921063.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Vibrio sp. Ex25]
 gi|262395680|ref|YP_003287533.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Vibrio
           sp. Ex25]
 gi|151939674|gb|EDN58501.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Vibrio sp. Ex25]
 gi|262339274|gb|ACY53068.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Vibrio
           sp. Ex25]
          Length = 686

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  ++   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLIEKCILQPRHVEVQVFADQHCNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 292


>gi|320589745|gb|EFX02201.1| 3-methylcrotonyl-carboxylase subunit alpha [Grosmannia clavigera
           kw1407]
          Length = 750

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/240 (16%), Positives = 78/240 (32%), Gaps = 15/240 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
           +D D+ + L L H         LH   G   E+           I +      A A   D
Sbjct: 88  LDGDKIIALALQHG-----IQALHPGYGFLSENAAFAERCAAAGITFVGPPAQAMADMGD 142

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K RSK ++ + GVP  P         +        +  P ++K ++GG   G+ +++   
Sbjct: 143 KARSKAIMLAAGVPCVPGYHGPDQAPEQLAVHAAKVGYPVLLKSVRGGGGKGMRIVQTPD 202

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
                L  + +          + +                  +           +     
Sbjct: 203 EFEAQLRSARAEARASFGDGGEVMLVERYIVRPRHVEVQVFADKHGTAVALGERDCSIQR 262

Query: 209 LNSTHVLPAKIPL---DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   +  +  P    D+  ++   A  A  A+G  G    +F+ D  + + F++E+N +
Sbjct: 263 RHQKILEESPAPDLGDDLRHDLWDRARTAALAVGYVGAGTVEFILDRDTGEFFFMEMNTR 322


>gi|329965042|ref|ZP_08302030.1| carbamoyl-phosphate synthase, large subunit [Bacteroides fluxus YIT
           12057]
 gi|328524192|gb|EGF51266.1| carbamoyl-phosphate synthase, large subunit [Bacteroides fluxus YIT
           12057]
          Length = 1072

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIHTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       + E   +    + + A   + D+    Q +    V    S  
Sbjct: 88  AFGGQTALNCGVALYKDKVFEKYGVKVLGTPVQAIIDTEDREIFVQKLDEIDVKTIQSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +  +   +L   +++   Q+L+E+
Sbjct: 148 VENVEDARRAAAELGYPVIVRAAYALGGLGSGFCDNEAELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNADYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPNSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|299769654|ref|YP_003731680.1| biotin carboxylase [Acinetobacter sp. DR1]
 gi|298699742|gb|ADI90307.1| biotin carboxylase [Acinetobacter sp. DR1]
          Length = 456

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +       L    +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILEACVHACQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|218526160|gb|ACK86487.1| carbamoyl-phosphate synthase [Agulla bicolor]
          Length = 719

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       +  V+   +PD    
Sbjct: 130 SGSQAIKALKEENIQTVLVNPNIATVQTSKGLADKVYFLPLVPEYIEQVIRSERPDGVLL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     I          + I +   + D+    + V   +  V    +
Sbjct: 190 TFGGQTALNCGVELERANIFNKYGCRILGTPIKSIIETEDRRIFSERVSEINEKVAPSEA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG       + +    L   ++ H  QL+I++
Sbjct: 250 VSSIDEALKAAEKLRYPVMARAAFSLGGLGSGFANNKEELIN--LAQQAFAHSTQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDANDNCITVCNMENVDPLGIHTGESIVVAPSQTLNNREYNMLRTT 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WM 292
            +
Sbjct: 423 KL 424


>gi|237755382|ref|ZP_04584010.1| carbamoyl-phosphate synthase large chain, C- section
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237692466|gb|EEP61446.1| carbamoyl-phosphate synthase large chain, C- section
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 530

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L + G++   +         D D              V  ++   KP        G
Sbjct: 28  CVWSLREEGYEAIMVNCNPETVSTDYDTSDKLFFEPIVLEDVLNIIEKEKPFGVVVQFGG 87

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    +  A   ++ R   +      P   +       +  
Sbjct: 88  QTPLKLAKPLEKLNIPILGTSPESIDIAEDRERFRDLIIKLGIKQPESATAKSKDEAVKV 147

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++   + +   + ++        +LI++++DG   +  
Sbjct: 148 AQEIGFPVLVRPSYVLGGRAMRLVYDMEELLKYIEEAVMVTEDRPILIDKFLDG---SIE 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  D   D  ++ V     +  E    S +S   +P    P ++  +++  + +  +A+ 
Sbjct: 205 VDVDCVCDGEDVLVGAVMEHIEEAGIHSGDSATCIPHYTLPDEVVIKIKEQSRMLAKALN 264

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G+    +       +++ +E N +   T     P ++   GY   ++
Sbjct: 265 TIGLINIQYAI--KDNEIYIIEANPRASRT----VPFVSKAIGYPLAKI 307


>gi|163732251|ref|ZP_02139697.1| carbamoyl-phosphate synthase large subunit [Roseobacter litoralis
           Och 149]
 gi|161394549|gb|EDQ18872.1| carbamoyl-phosphate synthase large subunit [Roseobacter litoralis
           Och 149]
          Length = 1170

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 80  SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPITPEMVAKIIEKERPDALLP 139

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 140 TMGGQTGLNTSLALEEMGVLDKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKAAI 199

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                    +    +  P +I+P       G  V              
Sbjct: 200 VTAPKDAKGKKDLAEGVRLALEILEEVGLPAIIRPAFTMGGTGGGVAYNRDDYEAICRSG 259

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 260 MDASPVGQILVDESLLGWKEFEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 319

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 320 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 375

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 376 SKATGFPIAKIAAKL 390



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 111/316 (35%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   I         D D S 
Sbjct: 637 VVILGGGPN-------RIGQGIEFDYCCCHACYALTEAGYETIMINCNPETVSTDYDTSD 689

Query: 43  GLVLAHLKPDLAFNV---------LHG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +         LHG            +   LE   IP   +   A  
Sbjct: 690 RLYFEPLTFEHVMEIMRVEQENGTLHGVIVQFGGQTPLKLANALEEAGIPILGTTPDAID 749

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V   G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 750 LAEDRERFQQLVQGLGLKQPKNGIAHSDAEALEIAQEIGFPLVIRPSYVLGGRAMEIVRD 809

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 810 QASLERYISEAVVVSGDSPVLLDSYLTGAVELDVDALSDGTDVHVAGVMQHIEEAG---V 866

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I ++V+   +   +A+   G+    F       +++ +E+N +
Sbjct: 867 HSGDSACSLPPYSLKSEIIEQVKEQTYALAKALNVVGLMNIQFAV--KDGEIYLIEVNPR 924

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 925 ASRT----VPFVAKAT 936


>gi|156541114|ref|XP_001601400.1| PREDICTED: similar to Methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha) [Nasonia vitripennis]
          Length = 699

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 78/247 (31%), Gaps = 13/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K            +H   G   E+     + +   I +    
Sbjct: 69  EAYCIGPAPSSQSYLRQDKIIATAKSAKCQAIHPGYGFLSENTEFAELCQKQNIIFIGPP 128

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSL 139
             A      K  SK ++++ GVP+      +  +          I  P +IK ++GG   
Sbjct: 129 AQAIRDMGIKSTSKAIMAAAGVPIIEGYHGDDQSNEKLLQEAQKIGFPLMIKAVRGGGGK 188

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ + +K+      L  + + +          ++        +                 
Sbjct: 189 GMRIARKEAEFLQALESARTESQKAFGDSAVLLEQYVAEPRHVEVQVFADKHGNAVYLFE 248

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          PA  I  ++  E+   A  A +A+G  G    +F+ D  + K  
Sbjct: 249 RDCSVQRRHQKVIEEAPAPGISEELRVELGEAAVRAAKAVGYVGAGTVEFIMDRHTHKFH 308

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 309 FMEMNTR 315


>gi|256818877|ref|YP_003140156.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           DSM 7271]
 gi|315224251|ref|ZP_07866090.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           F0287]
 gi|256580460|gb|ACU91595.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           DSM 7271]
 gi|314945799|gb|EFS97809.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga ochracea
           F0287]
          Length = 450

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  + K++ +   L  +       + +    + +  VD  
Sbjct: 148 AAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALNSAMQEAGAAFGNDAMYMEKLIVDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +     +       +  D+ K +   A  A 
Sbjct: 208 HIEIQIVGDQYGKACHLSERDCSIQ----RRHQKLTEETPSPFMTDDLRKRMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G    +FL D   R  +++E+N +
Sbjct: 264 EYIKYEGAGTVEFLVD-KDRNFYFMEMNTR 292


>gi|195505549|ref|XP_002099553.1| GE23296 [Drosophila yakuba]
 gi|194185654|gb|EDW99265.1| GE23296 [Drosophila yakuba]
          Length = 698

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 71/254 (27%), Gaps = 25/254 (9%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSG------ILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         EL +             I    +               +     
Sbjct: 102 AIHPGYGFLSESVEFAELCQREDIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 EDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKRDDFLTALNSARTESEKSFGDSS 221

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
             ++    +   +                     ++          PA    + + +E+ 
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGEAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELG 281

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A +A+G  G    +F+ D       ++E+N       P +T +            
Sbjct: 282 EAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------I 329

Query: 284 SFRELLLWMVEDAS 297
           +  +L+ W +  A+
Sbjct: 330 TGTDLVEWQIRIAA 343


>gi|170017351|ref|YP_001728270.1| carbamoylphosphate synthase large subunit (split gene in MJ)
           [Leuconostoc citreum KM20]
 gi|226700933|sp|B1MZ74|CARB_LEUCK RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|169804208|gb|ACA82826.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Leuconostoc citreum KM20]
          Length = 1059

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G+ V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAALSLKEEGYYVILVNSNPATIMTDAEIADKVYIEPLSIDFIERILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +               +E+  T    +  A   ++ ++     +  +P    
Sbjct: 89  TLGGQTGLNMAKNLSEAGILDELRIELLGTKLSAIEEAEDREEFKALMERLNEPIPESVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D       P +++P       G  +    Q +          +   Q+LIE+
Sbjct: 149 ATTVEEAVDFADTHGYPVIVRPAYTLGGTGGGIAATHQELVDISANGLELSPVTQVLIER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +F    +       T  +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDAHDNALVVASMENFDPVGVHTGDSIVTAPVQTLSDREVQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S K + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPQSYKYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 91/289 (31%), Gaps = 30/289 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 579 KAIQRAGYEAIIMNSNPETVSTDFSISDKLYFEPLTLEDVLNVIDLEQPLGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +         +   PV  +       +++  
Sbjct: 639 AINLAQPLEENGVNILGTTVDDLNRAEDREAFDQVIKTLALPQPVGKTATTVDGALNAAQ 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P        + ++  D  +   + ++   ++   +LI+ Y+ G E    V+
Sbjct: 699 AIGYPVLIRPSYVLGGRAMEIVSSDDELQDYMQRAVKVSNDHPVLIDSYLVGQEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  + +   P  +   +  E+   A    +A+   G
Sbjct: 759 SDGETAVIPGIMEHIERAG---VHSGDSMSVYPPQYLSQKVQDEMTAAAINLAKAMNTIG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+        + +E+N +   T     P ++        +L   
Sbjct: 816 LMNVQFVI--HDNTAYVIEVNPRASRT----VPFISKVTHLPLAQLATR 858


>gi|6434097|emb|CAB60645.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634619|emb|CAB64500.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|237807862|ref|YP_002892302.1| phosphoribosylglycinamide formyltransferase 2 [Tolumonas auensis
           DSM 9187]
 gi|259547265|sp|C4LDC0|PURT_TOLAT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|237500123|gb|ACQ92716.1| phosphoribosylglycinamide formyltransferase 2 [Tolumonas auensis
           DSM 9187]
          Length = 394

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  ++   KP      +
Sbjct: 24  GKEVAIELQRLGVEVIAVDRYANAPAMQVAHRSHVISMLDGEALSQLVQQEKPHFIIPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E            +P   +  L       +  + + +                  
Sbjct: 84  EAIATETLQKLEQEGFNVVPTALATRLTMDREGIRRLAAETLKLPT-SPYFFAETEAEYQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  V++K   +   +    +   G        V+G    
Sbjct: 143 QAVEQIGFPCVIKPVMSSSGKGQSVVRKADQV--AVAWQYAQEGGRAGRGRVIVEGFVPF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +   + ++ Q +A    +A+
Sbjct: 201 DYEITLLTVSAVDGIHFCAPIGHRQEDG--DYRESWQPQVMSDALLEKSQHVAREVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V++ E++ +P   GM
Sbjct: 259 GGYGLFGVELFI--KGDEVYFSEVSPRPHDTGM 289


>gi|304321207|ref|YP_003854850.1| carbamoyl-phosphate synthase large subunit [Parvularcula
           bermudensis HTCC2503]
 gi|303300109|gb|ADM09708.1| carbamoyl-phosphate synthase large subunit [Parvularcula
           bermudensis HTCC2503]
          Length = 1096

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 61/179 (34%), Gaps = 7/179 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P V +P        + ++  +  +   L  +         L+  +     + C 
Sbjct: 729 AGQVGYPLVTRPSFVLGGRAMEIVHDETGLKRYLQTAKIEITDRLPLLLDHYLQNAVECD 788

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V          +A            +S  ++  + P  +  DI +E++R      +A+G 
Sbjct: 789 VDAICDGTDVFVAGVMQHVEE-AGVHSGDSACSLPPYTLSDDIIEELKRQTIAMGKALGV 847

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           RG+    +       +++ +E+N +   T     P +A   G    ++   ++  AS  
Sbjct: 848 RGLMNVQYAI--KDDEIYVIEVNPRASRT----VPFVAKTIGIPVAKIAARIMAGASLD 900



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/320 (11%), Positives = 89/320 (27%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+D G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGVQAVKALKDEGYRVILVNSNPATIMTDPELADATYIEPITPEFVTKIIAAERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----- 107
            + G          L    L+   +    +   A  ++ D+   ++ +   G+       
Sbjct: 89  TMGGQTALNCALALLDDGTLDTYGVEMIGARGDAIRMAEDRELFREAMDRIGLENPRATI 148

Query: 108 ---------------CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                                    M     I  P +++P       G  V    +    
Sbjct: 149 AKSPEIRDATGKLVGYNRAQGFANAMADLDTIGLPAIVRPAFTLGGTGGGVAYNREEFER 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +      +   Q+LI++ + G +     +     D   I     +     +      + 
Sbjct: 209 IVKAGLDASPVGQVLIDESLLGWKEYEMEVVRDRADNCIIICSIENIDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +  +       +  +     G S   F  +P   ++  +E+N  P ++  S
Sbjct: 269 APALTLTDREYQRMRNASLAVLREIGVETGGSNVQFAVNPEDGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKVAAKL 344


>gi|297181037|gb|ADI17237.1| acetyl/propionyl-CoA carboxylase, alpha subunit [uncultured alpha
           proteobacterium HF0070_14E07]
          Length = 668

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/315 (14%), Positives = 100/315 (31%), Gaps = 48/315 (15%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLA---------------HLKPDLAFNV------- 57
            A+     G +   I  DVDR    V A               +L+ D   +        
Sbjct: 17  IAATARRMGIRTVAIYSDVDRDGLHVEACDEAVAIGGTSSADSYLEIDKVLSAAIETASD 76

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+ +        +I +      A  +   K ++K+++ S GVP+ P    
Sbjct: 77  AIHPGYGFLSENPVFAKECAAAKIIFVGPPATAIEVMGSKSKAKKLMESAGVPLVPGYHG 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +       + I  P ++K   GG   G+ +++    +   +  S            
Sbjct: 137 EEQEVSYLSQKANEIGFPVLVKASAGGGGRGMRIVESLDDLETAVNSSKREAKAAFSDDH 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
             ++        +        +  +         ++          PA    ++  K++ 
Sbjct: 197 LMLEKFITEPRHIEVQIFADEKGNIVHLFERDCSVQRRYQKVIEEAPAPNLSIETRKKLF 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA---GYSF 285
             A  A +AI   G    +F+ D    + +++E+N +              ++     S 
Sbjct: 257 DAALAAVRAINYVGAGTIEFIADA--NQFYFIEMNTR----------LQVEHSVTEAISG 304

Query: 286 RELLLWMVEDASCLR 300
            +L+ W +  A+  R
Sbjct: 305 IDLVEWQIRIANGER 319


>gi|156146040|gb|ABU53081.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQDELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVAAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146034|gb|ABU53078.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146020|gb|ABU53071.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146004|gb|ABU53063.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|159896593|ref|YP_001542840.1| carbamoyl-phosphate synthase large subunit [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159889632|gb|ABX02712.1| carbamoyl-phosphate synthase, large subunit [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 1065

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + GF++  +         D               +V  ++A  +PD    
Sbjct: 29  SGTQAIKALREEGFRIILVNSNPATIMTDPSLADRTYIEPLDVPTVSEIIARERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  +       LE   +    + + A A + D+   KQ +   G+    S +
Sbjct: 89  TVGGQTALNLAMDLHRAGVLEQYNVQLLGANVEAIATAEDRELFKQAMDRIGLQSARSGI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P +I+P       G  +    +     + +    +   +LLIE+
Sbjct: 149 ARSLEEALELVKATGFPSIIRPSFTLGGAGGGIAYNSEDFRRIVEEGLKLSPIGELLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S     +     +F    +      +          +  +     
Sbjct: 209 SLLGWKEYELELMRDSAGNGVVVCSIENFDPMGVHTGDSITVAPAMTLSDREYQRLRDMG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G S   F  +P   +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 LAVMEVVGVATGGSNVQFAINPHDGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/293 (11%), Positives = 82/293 (27%), Gaps = 34/293 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D +  L    L  +   N++             G   
Sbjct: 584 ALRELGYETIMVNCNPETVSTDYDTADRLYFEPLTLEDVLNIVDVEQPAGVLLQFGGQTP 643

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A    +  +             S             
Sbjct: 644 LKLAKGLEAAGVPLWGTSPAAIDRAEDRGQFGAVLAECGLRATPYGSATSWDEARAIAER 703

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P       G+ +I     +   L   +  +    +L++++++          
Sbjct: 704 IGYPTMVRPSYVLGGQGMAIIHDQAGLDDYLRHITEASPEHPVLLDRFLEDATELDVDAV 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
                V    + +    +      S      +   I   + ++++       +A+G  G+
Sbjct: 764 ADGETVVIAGMMEQIERAGIHSGDSACVMPTV--GIKPQVIEQLKIATDKLARALGVIGL 821

Query: 244 SRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY----AGYSFRE 287
               F       +++ LE+N       P +   S     A      AG S ++
Sbjct: 822 MNVQFAV--KDDEIYVLEVNPRASRSIPYVAKASGVAWAALAAKVMAGVSLKQ 872


>gi|3821360|emb|CAA13247.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821399|emb|CAA13266.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711523|gb|ABR02188.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711553|gb|ABR02203.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711609|gb|ABR02231.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711617|gb|ABR02235.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711625|gb|ABR02239.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711631|gb|ABR02242.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711685|gb|ABR02269.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711687|gb|ABR02270.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711781|gb|ABR02317.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711783|gb|ABR02318.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711785|gb|ABR02319.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711797|gb|ABR02325.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711801|gb|ABR02327.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711805|gb|ABR02329.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711811|gb|ABR02332.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711815|gb|ABR02334.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145998|gb|ABU53060.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146008|gb|ABU53065.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146010|gb|ABU53066.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146016|gb|ABU53069.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146028|gb|ABU53075.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146048|gb|ABU53085.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146050|gb|ABU53086.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|1814246|gb|AAB41853.1| D-Alanine:D-Alanine ligase [Streptococcus mitis]
          Length = 197

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 57  EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 114

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 115 LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 174

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 175 GGLGLSRCDFFYTDK-GEIFLNE 196


>gi|50084889|ref|YP_046399.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ADP1]
 gi|49530865|emb|CAG68577.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ADP1]
          Length = 462

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 86/285 (30%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVETSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHIEVQVLGDGNGHAVHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +        A + +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILE----ACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|218780864|ref|YP_002432182.1| carbamoyl-phosphate synthase L chain ATP-binding [Desulfatibacillum
           alkenivorans AK-01]
 gi|218762248|gb|ACL04714.1| Pyruvate carboxylase, biotin carboxylase subunit [Desulfatibacillum
           alkenivorans AK-01]
          Length = 484

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/180 (12%), Positives = 58/180 (32%), Gaps = 20/180 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P ++K + GG   GI  +  ++ +   +  + +           Y++   +    +
Sbjct: 157 KYGYPVMLKAVAGGGGRGIRKVDSEKELLSQIEIAKNEAISAFGDGRLYLEKGIVNPRHI 216

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L      V      +  ++        + P+ +   + +++ + A    + +G   
Sbjct: 217 EVQILGDQHGNVIHMGGRNCSIQRRHQKLVEIAPSLLDPALEEKICQSAIQYAKHVGYVN 276

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
               +FL D      ++LEIN +              +       G    +++  M+  A
Sbjct: 277 AGTVEFLVD-SDDSFYFLEINTR----------LQVEHTVTEVVTGI---DIVRRMIRVA 322


>gi|307209408|gb|EFN86425.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Harpegnathos saltator]
          Length = 652

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 73/216 (33%), Gaps = 13/216 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + +   + +      A      K  SK ++   GVP+      
Sbjct: 60  AIHPGYGFLSENTEFAELCQKENVIFIGPPASAIRDMGIKNTSKAIMMKAGVPIIEGYHG 119

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  + ++       I  P +IK ++GG   G+ +  K+      L  + + +        
Sbjct: 120 DDQSNETLLAEARKIGFPLMIKAVRGGGGKGMRIALKESDFTEALESARTESQKAFGDSA 179

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             ++        + +      +I   K     Y  +             I  ++ +++  
Sbjct: 180 VLLE------KYVAEPRHVEVQIFADKYGNTVYLFERDCSVQRRHQKPGISQELRQKLGE 233

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A +A+G  G    +F+ D       ++E+N +
Sbjct: 234 AAVCAAKAVGYVGAGTVEFIMDRNDHSFHFMEMNTR 269


>gi|296159163|ref|ZP_06841990.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           Ch1-1]
 gi|295890724|gb|EFG70515.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           Ch1-1]
          Length = 404

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTNRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++        L E+  T      +       R                       
Sbjct: 87  EAIATDELAAIESAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAINPASGEVSTYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|148711767|gb|ABR02310.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 72/143 (50%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+ ++  T     V    FY Y+ KY     T  +PAKI  D+   +++ A +A +AI
Sbjct: 65  LLGNYNVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEIAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|1255017|gb|AAB17899.1| D-alanine:D-alanine ligase [Enterococcus dispar]
          Length = 200

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 60/157 (38%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+GI   +  + +   L ++  ++   
Sbjct: 44  LKNLWKENPKQIFEQCEGTLLYPMFVKPANMGSSVGISKAENREELQNALQEAYKYDTRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V    FY Y  KY        +PA+IP D+ 
Sbjct: 104 IVEQGIERGEIEVAILGNEDVRTTLPGEIVKDVAFYDYNSKYIDNQIIMQIPAEIPEDVQ 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ Q  A  A+  +G  G+SR DF       ++F  E
Sbjct: 164 QKAQDFAKKAYVMLGGSGLSRCDFFLT-NKNELFLNE 199


>gi|329957965|ref|ZP_08298397.1| carbamoyl-phosphate synthase, large subunit [Bacteroides clarus YIT
           12056]
 gi|328522114|gb|EGF49230.1| carbamoyl-phosphate synthase, large subunit [Bacteroides clarus YIT
           12056]
          Length = 1113

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIHTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGVML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + + E   +    + + A   + D+    + +    V    S  
Sbjct: 88  AFGGQTALNCGVELYKKGVFEQYGVKVLGTPVQAVIDTEDREIFVRKLDEINVKTIQSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 VENAEDARRAAAELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|304391688|ref|ZP_07373630.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ahrensia sp.
           R2A130]
 gi|303295917|gb|EFL90275.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ahrensia sp.
           R2A130]
          Length = 448

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 84/254 (33%), Gaps = 29/254 (11%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ILE   I +        ++  DK+ +KQ     G+P+ P    
Sbjct: 77  AIHPGYGFLSENAKFAEILEAHNITFIGPSSAHISMMGDKIVAKQTAKELGIPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +          + I  P +IK   GG   G+ V+  D  +   L  + +     +    
Sbjct: 137 AVTELDDARRIANDIGYPVIIKAASGGGGRGMKVVNNDDEMTTALQTTRTEAGAAFGDDS 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   VMGD       +            +             + ++  
Sbjct: 197 VYIEKYLATPRHIEVQVMGDGKGRGVHLGERDCSLQ----RRHQKVLEEANSPALTVEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPE 276
           + +  +   A   +G  G    +FL+   + + +++E+N       P    +T + +  E
Sbjct: 253 ERIGGICAKAIGDMGYSGAGTIEFLY--ENGEFYFIEMNTRLQVEHPVTEMITRIDLVNE 310

Query: 277 MAAYA---GYSFRE 287
               A   G +F +
Sbjct: 311 QLNVAMGNGMTFEQ 324


>gi|302775624|ref|XP_002971229.1| hypothetical protein SELMODRAFT_411767 [Selaginella moellendorffii]
 gi|300161211|gb|EFJ27827.1| hypothetical protein SELMODRAFT_411767 [Selaginella moellendorffii]
          Length = 541

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/249 (15%), Positives = 77/249 (30%), Gaps = 9/249 (3%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
                   G K   +  D     +      +  F           L+ +   L+ +    
Sbjct: 52  IIKTARSLGLKTVAVYSDADRNSLHVRRADEAVFI----GPATCPLLPSSTLLVALEPMQ 107

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGS 137
           S   A +L  DK  SK+++S   VPV P    +  + +        I  P +IKP+ GG 
Sbjct: 108 SIPAAISLMGDKSASKKLMSGANVPVVPGYHGDDQSHELLQSEADRIGYPVLIKPVLGGG 167

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G+ ++         L  +   +          ++        +           V   
Sbjct: 168 GKGMRIVHSRDEFLDSLRSALRESAAAFGDTRVLIEKYIAQPRHIEVQIFGDRFGNVVHL 227

Query: 198 DFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                 ++          PA  +  D    + + A  A +A+        +F+ D  +  
Sbjct: 228 FERDCSVQRRHQKIIEEAPAPLMSDDFRNSIGQAAVNAAKAVNYENAGTVEFIVDTATGD 287

Query: 257 VFWLEINVQ 265
            F++E+N +
Sbjct: 288 FFFMEMNTR 296


>gi|77919721|ref|YP_357536.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
 gi|77545804|gb|ABA89366.1| acetyl-CoA carboxylase/biotin carboxylase [Pelobacter carbinolicus
           DSM 2380]
          Length = 445

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 90/284 (31%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVD-RSVGLVLAHLKP--------DLAFN----------- 56
                 A ++ G K   +  DVD  S+ + LA            D   N           
Sbjct: 14  ALRIIRACKELGIKTVAVHSDVDGESLHVKLADESICIGPAASGDSYLNIKAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
               +H   G   E+     I E   I +         L  DK+R++Q V+  GVP+   
Sbjct: 74  DAAAIHPGYGFLAENAEFAEICEECGITFIGPSPENMRLMGDKIRARQTVTKAGVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               +            I  P +IK   GG   G+ V+    S+      + S     + 
Sbjct: 134 TTEGVGTIDQARQIAEEIGYPVIIKATAGGGGRGMKVVHSPASLANAFAAARSEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +   +   +   ++ D   +V  +            +             +  
Sbjct: 194 NPEVYIEKFCENPRHVEVQILADKHGNVVHLGERDCSIQ----RRHQKLLEEAPCPVLTE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  K +   A  A ++     +   +FL D  +   +++E+N +
Sbjct: 250 EQRKRMGDCAVAAAKSCNYSSVGTMEFLLDG-NGDFYFMEMNTR 292


>gi|262279409|ref|ZP_06057194.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
 gi|262259760|gb|EEY78493.1| biotin carboxylase [Acinetobacter calcoaceticus RUH2202]
          Length = 456

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 85/285 (29%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   ++GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQILGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +       L    +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILEACVHACQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|254457619|ref|ZP_05071047.1| phosphoribosylglycinamide formyltransferase 2 [Campylobacterales
           bacterium GD 1]
 gi|207086411|gb|EDZ63695.1| phosphoribosylglycinamide formyltransferase 2 [Campylobacterales
           bacterium GD 1]
          Length = 387

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 81/273 (29%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 23  GKEVAIEAQRLGLEVVAVDRYQNAPAHHVAHRSYVVNMQDKDALLEIIYREKPDYILPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D L  A  +   +    S +  +    +       V          +       
Sbjct: 83  E-AISIDALFAAEDKGYNVIPNASAVSKTMNRKNIRTFAAEVLGLKTGPYEFVTTEDGLR 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +  P VIKP+   S  G  V+K ++ +P     +         LI +     +  
Sbjct: 142 EASKRMGYPCVIKPVMSSSGHGQSVLKCEEDVPKSWEIAKEARGDASELIVEAFVDFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++     ++ Q +A      +
Sbjct: 202 ITMLTARNGKETVYCEPIGH-----EQRDGDYVFSWQPMQMSEIAKQKSQEMAKTITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G RG+   +         V++ E++ +P   GM
Sbjct: 257 GGRGLFGVELFI--KGDDVYFSEVSPRPHDTGM 287


>gi|118591275|ref|ZP_01548673.1| pyruvate carboxylase [Stappia aggregata IAM 12614]
 gi|118435947|gb|EAV42590.1| pyruvate carboxylase [Stappia aggregata IAM 12614]
          Length = 1146

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+ VI  + ++  +++ +           E Y++
Sbjct: 143 MDEIKRQAAEIGYPVMLKASWGGGGRGMRVIPDEATLSKEVVAAKREAKAAFGKDEIYLE 202

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            +      +    L   E  V   +      +             +      E+      
Sbjct: 203 KLVQRARHVEVQILGDGENVVHLFERDCSIQRRHQKVVERAPAPYLSAKKRAELCEYGLK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +A+  RG    +FL D  +  ++++E+N +
Sbjct: 263 IGRAVNYRGAGTVEFLMDADTGDIYFIEVNPR 294


>gi|302905194|ref|XP_003049218.1| hypothetical protein NECHADRAFT_45465 [Nectria haematococca mpVI
           77-13-4]
 gi|256730153|gb|EEU43505.1| hypothetical protein NECHADRAFT_45465 [Nectria haematococca mpVI
           77-13-4]
          Length = 495

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 47/145 (32%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++   +     L + +S            ++       
Sbjct: 167 ADRIGYPVMIKASAGGGGKGMRIVHSKEDFRESLQRCTSEAGRLFGSAHCLIEKYIEAGK 226

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        E AV   D      + +           +  ++ +++   A    + +  
Sbjct: 227 HVEMQIFGDGETAVSFLDRECSVQRRNQKIIEESPCPWLSAEMRQDMSNSALEIARLLKY 286

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 +F+ D  + + ++LE+N +
Sbjct: 287 ESAGTVEFIVDIKNERYYFLEVNTR 311


>gi|118444928|ref|YP_878874.1| carbamoyl phosphate synthase large subunit [Clostridium novyi NT]
 gi|118135384|gb|ABK62428.1| carbamoyl-phosphate synthase, large subunit [Clostridium novyi NT]
          Length = 1063

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ++++ G +   ++ +                      +V  ++   KP+    
Sbjct: 29  SGTQACKSIKEEGIETVLVNSNPATIMTDLNIADKVYIEPLKIEAVEKIIEKEKPNGILA 88

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  ++           +++   +   +  A   ++ +   +     +P    
Sbjct: 89  GFGGQTALNIAMELQEKGVLEKNNVKLLGINGESIKKAEDREEFKELMLEIGEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P +I+P       G  + +  +            +   Q+L+EQ
Sbjct: 149 AVNMEECKAFVERHGLPIIIRPAYTLGGTGGGIAETMEQYLDICELGLKMSPIHQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   +       ++  +        +    ++ ++  
Sbjct: 209 SVAGW-KELEYEVIRDKKDNCIIICNMENIDPVGVHTGDSIVVAPSQTLTDKEHQMLRNS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  DP+S K   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRSLKIEGGCNIQFALDPISNKYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 95/282 (33%), Gaps = 30/282 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFN----------VLHGNFGED 65
           A+ +AG++   +         D D S  L    L  D   N          +L       
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLFIDDVMNVVRKENPKGVILQFGGQTS 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L    +    +   +  L+ D+ + ++++    +       +            
Sbjct: 640 VNLAEKLSQRGVNILGTKFESIDLAEDREKFRELLEELNIKTPTGNAVTSIEEAYKVVEN 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  D  K++         A+   G+
Sbjct: 760 DGEDILMPGIMEHIERTG---VHSGDSITVYPYMTLSEDTVKKLVENTKKIATALNIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               ++FD     ++ +E+N +   T     P ++   G   
Sbjct: 817 VNIQYVFDGKD--IYVIEVNPRASRT----VPILSKVTGVPM 852


>gi|48525846|gb|AAT45133.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525850|gb|AAT45135.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525856|gb|AAT45138.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|156146804|gb|ABU53414.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146818|gb|ABU53421.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146882|gb|ABU53453.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146886|gb|ABU53455.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146896|gb|ABU53460.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146900|gb|ABU53462.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634605|emb|CAB64493.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711587|gb|ABR02220.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711647|gb|ABR02250.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711771|gb|ABR02312.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711773|gb|ABR02313.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711795|gb|ABR02324.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711819|gb|ABR02336.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|289423730|ref|ZP_06425526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
 gi|289155857|gb|EFD04526.1| pyruvate carboxylase [Peptostreptococcus anaerobius 653-L]
          Length = 1147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/239 (15%), Positives = 84/239 (35%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    K D      +G   E+       E   I +            DK+ 
Sbjct: 65  LDIDG-IISLAKRKKVDAIHPG-YGFLSENAEFARKCEENGITFIGPDSSIMEQLGDKIN 122

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V  +  VP  P +       +   +    I  P ++K   GG   G+ ++++++ + 
Sbjct: 123 SKIVAHAANVPTIPGVEKALKTIKEAKEVAAEIGYPVMVKASNGGGGRGMRIVRREEDLE 182

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++          ++      + +   D   +   ++GDA  ++  +            K 
Sbjct: 183 IEFENARSESRKAFGEDIIFIEKYIEDPKHIEVQILGDAYGNIVHLYERDCSVQRRHQKI 242

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   LP     +I +++ + A    + +  +     +FL D      +++E+N +
Sbjct: 243 IEHAPAFSLPT----EIREKICQDAVRIAKHVNYKSAGTLEFLVDKHGNH-YFIEMNTR 296


>gi|297620244|ref|YP_003708349.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus voltae
           A3]
 gi|297379221|gb|ADI37376.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus voltae
           A3]
          Length = 504

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 72/231 (31%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   E+           I +    I A  L   K+ +K+ 
Sbjct: 64  EKILKIAEKTGADGIHPG-YGFLSENSKFADECNKRNIEFIGPPIRAIELMGSKINAKKT 122

Query: 100 VSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P                  I  P +IK   GG  +G+ V   +  +   + 
Sbjct: 123 MKKAGVPVLPGREEPIEDEGEAAKIAKEIGYPVIIKASAGGGGIGMSVANDESELIDTIQ 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    L      V         ++          
Sbjct: 183 STKSIAQSAFGDSTIFIEKYLEKPRHIEIQILADKHGNVIHLGDRECSIQRRHQKVIEEA 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P   +  ++ +++   A +A + I        +FL++    + ++LE+N +
Sbjct: 243 PSPIMTPELREKMGEAAKIAAKCIDYYSAGTVEFLYN--GGEFYFLEMNTR 291


>gi|156146030|gb|ABU53076.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|146297865|ref|YP_001192456.1| carbamoyl phosphate synthase large subunit [Flavobacterium
           johnsoniae UW101]
 gi|146152283|gb|ABQ03137.1| carbamoyl-phosphate synthase, large subunit [Flavobacterium
           johnsoniae UW101]
          Length = 951

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 87/287 (30%), Gaps = 29/287 (10%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A ++ G++   I         D D              +  ++ H KP+     L
Sbjct: 593 HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYFEPVFWEHIYDIIQHEKPEGVIVQL 651

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A    +        +   P            
Sbjct: 652 GGQTALKLADKLSKYGVKIIGTSFDALDLAEDRGRFSDLLTELNIPFPRFGIAETADEAS 711

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P +I+P       G+ ++   + +   ++       G++LL++ Y+ G  + 
Sbjct: 712 KLADTLDFPLLIRPSYVLGGQGMKIVINKKELEEHVIDLLKAIPGNKLLLDHYLAG-AIE 770

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                    D     +   +       +S  ++  + P  +   + ++++       +A+
Sbjct: 771 AEADAICDADGNVYIIGIMEHIEPCGVHSGDSNATLPPFNLGEFVMQQIKDHTHKIARAL 830

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              G+    F        V+ +E N +   T     P +A   G  +
Sbjct: 831 KTVGLINIQFAI--KDDTVYIIEANPRASRT----VPFIAKAYGEPY 871



 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 90/303 (29%), Gaps = 33/303 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAFN 56
           G   A ++ + G +V  I         D              +S+  +L    + D    
Sbjct: 30  GSQSARSIREEGIEVILINSNPATIMTDPSMADHIYLKPLTTKSIIEILKEHPQIDAVLP 89

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPS 110
            + G    +  ++A      +   +      + A  ++ D+ + KQ++    VP     +
Sbjct: 90  TMGGQTALNLCLEAEEKGIWQDFGVRLIGVDVNAINITEDREQFKQLLEKIKVPTAPAKT 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P VI+P       G  V+ K +     L +    +   ++LI++
Sbjct: 150 ATSYLEGKEIAQEFGFPLVIRPSFTLGGTGAAVVYKKEDFDELLTRGLEASPIHEVLIDK 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             K     
Sbjct: 210 ALMGWKEYELELLRDKNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDTTFQKLRDYA 269

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 270 ILMMRSIGNFAGGCNVQFAVSPDEKEDIVAIEIN--PRVSRSS--ALASKATGYPIAKIA 325

Query: 290 LWM 292
             +
Sbjct: 326 SKL 328


>gi|48525852|gb|AAT45136.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAIMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|288801174|ref|ZP_06406629.1| carbamoyl-phosphate synthase, large subunit [Prevotella sp. oral
           taxon 299 str. F0039]
 gi|288331785|gb|EFC70268.1| carbamoyl-phosphate synthase, large subunit [Prevotella sp. oral
           taxon 299 str. F0039]
          Length = 1076

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGIETILINPNIATVQTSEGVADHIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+      ++   V    S  
Sbjct: 88  SFGGQTALNCGVELFKSGVLEKYNVQVLGTPVQAIIDTEDREIFVNKLNEINVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CETIEHARKAAKELGYPVIIRAAYALGGLGSGFCDNEEELNT--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEVEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP+S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIIRHIGIVGECNVQYAFDPVSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|167947936|ref|ZP_02535010.1| D-alanine-D-alanine ligase and related ATP-grasp enzyme [Endoriftia
           persephone 'Hot96_1+Hot96_2']
          Length = 48

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +G  G  R D + D    + + +E+N  PGMT
Sbjct: 1   MGASGWGRVDLMLDEA-GEPWLIEVNTVPGMT 31


>gi|167622864|ref|YP_001673158.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           halifaxensis HAW-EB4]
 gi|167352886|gb|ABZ75499.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           halifaxensis HAW-EB4]
          Length = 391

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 80/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  ++   KPDL    L
Sbjct: 22  GKEVAIELQRYGIEVIGVDRYPNAPAMQIAHRSHVINMLDAEALKALIELEKPDLVIPEL 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P   +  L       +  + + ++             +   
Sbjct: 82  EAIATQTLVEMEAKGVNIVPTAKATQLTMDREGIRRLAAETLAIPT-SPYFFCDTLQEFN 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 HAVATIGLPCVVKPVMSSSGKGQSVIRTQEQILAA--WQYAQEGGRAGKGRVIVEGFIAF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++               +            P  +   +  + Q +     +A+
Sbjct: 199 DYEITLLTISAVNGIHFCDAIGHRQEDG--DYRESWQPQVMSDVVLAKSQAIGKKVVEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V++ E++ +P   GM
Sbjct: 257 GGYGLFGVELFI--KGDEVYFSEVSPRPHDTGM 287


>gi|156146024|gb|ABU53073.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVSVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|154303972|ref|XP_001552392.1| hypothetical protein BC1G_08870 [Botryotinia fuckeliana B05.10]
 gi|150854454|gb|EDN29646.1| hypothetical protein BC1G_08870 [Botryotinia fuckeliana B05.10]
          Length = 345

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 72/217 (33%), Gaps = 8/217 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+           + +      A     +K RSK ++ + GVP  P    
Sbjct: 103 ALHPGYGFLSENSAFAKRCVEEGLVFIGPPWKAIEAMGNKSRSKDIMINAGVPCIPGYHG 162

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +        I  P ++K +KGG   G+ + + ++     L  + S          
Sbjct: 163 ENQEPEHLLNEAKKIGFPVMVKAVKGGGGKGMRIAQTEREFLEKLESAKSEGRNSFGDDV 222

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
             V+    T   +                     L+          PA    + I +++ 
Sbjct: 223 MLVEKYIATPRHIEVQVFADKHGNAVALGERDCSLQRRHQKILEEAPAPNLAENIRQDLW 282

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A  A+G  G    +F+FD  + + F++E+N +
Sbjct: 283 EKARAAALAVGYEGAGTVEFIFDNDTNEFFFMEMNTR 319


>gi|126208578|ref|YP_001053803.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae L20]
 gi|190150432|ref|YP_001968957.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 7 str. AP76]
 gi|303253319|ref|ZP_07339468.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|307246022|ref|ZP_07528104.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|307248129|ref|ZP_07530157.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|307250360|ref|ZP_07532309.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|307263777|ref|ZP_07545383.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
 gi|171855093|sp|A3N1B2|PURT_ACTP2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788764|sp|B3GXZ2|PURT_ACTP7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|126097370|gb|ABN74198.1| putative phosphoribosylglycinamide formyltransferase 2
           [Actinobacillus pleuropneumoniae serovar 5b str. L20]
 gi|189915563|gb|ACE61815.1| putative phosphoribosylglycinamide formyltransferase 2
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302648001|gb|EFL78208.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. 4226]
 gi|306852957|gb|EFM85180.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
 gi|306855306|gb|EFM87481.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 2 str. S1536]
 gi|306857635|gb|EFM89742.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 4 str. M62]
 gi|306870898|gb|EFN02636.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 13 str. N273]
          Length = 393

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 IPEI 315


>gi|114766609|ref|ZP_01445561.1| pyruvate carboxylase [Pelagibaca bermudensis HTCC2601]
 gi|114541149|gb|EAU44202.1| pyruvate carboxylase [Roseovarius sp. HTCC2601]
          Length = 1147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +   +L+            E Y++ +     
Sbjct: 151 AEEIGYPLMLKASWGGGGRGMRPIESGKELKEKVLEGRREAEAAFGNGEGYLEKMITRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L   +  +         ++  +       PA    +   +E+  L       + 
Sbjct: 211 HVEVQILGDKQGNIYHLYERDCSVQRRNQKVVERAPAPYLSEAQREELCELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  +   +++E+N +
Sbjct: 271 YECAGTVEFLMDMETGNFYFIEVNPR 296


>gi|119384016|ref|YP_915072.1| acetyl-CoA carboxylase biotin carboxylase subunit [Paracoccus
           denitrificans PD1222]
 gi|119373783|gb|ABL69376.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Paracoccus denitrificans PD1222]
          Length = 450

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     ++E   I +         +  DK+ +K+   S G+PV P     +   
Sbjct: 82  YGFLSENASFVQMVEDHGITFIGPSAEHIRIMGDKITAKETAKSLGIPVVPGSDGGVADV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                    I  P +IK   GG   G+ V   + ++      + +     + + +  + +
Sbjct: 142 AAARQVAAQIGYPVIIKATAGGGGRGMKVAHDEAALETAFRTARAEAKAAFGNDEVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            +             I  +    +  
Sbjct: 202 YLQRPRHIEVQVFGDGRGRAVHLGERDCSLQ----RRHQKVFEEAPGPVITAEQRARIGG 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A   IG RG    +FLF     + +++E+N +
Sbjct: 258 ICANAMAKIGYRGAGTIEFLF--EDGEFYFIEMNTR 291


>gi|327311766|ref|YP_004338663.1| carbamoyl phosphate synthase large subunit [Thermoproteus
           uzoniensis 768-20]
 gi|326948245|gb|AEA13351.1| carbamoyl phosphate synthase large subunit [Thermoproteus
           uzoniensis 768-20]
          Length = 1022

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A  + G +   ++ +                       +  ++   +PD    
Sbjct: 25  SGSQALKAFREEGIETILVNPNVATIQTSKVLADRVYFLPIRREFLEQIIERERPDAIAC 84

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V+           + +  T    +  ALS +  +     +   +P   S
Sbjct: 85  GFGGQTALSACVELHDAGVLSKYGVRVVGTPVEGIRRALSRELFQKAMREAGVPIPPSRS 144

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P +++        G    +    +   + ++ + +   ++L+E+
Sbjct: 145 ARSPDEALAAAEELGYPVMVRVSFNLGGAGAFKARNRAELESRIYKAFAQSAIGEVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G +     +   S D     V   +                    +  D Y+  + +
Sbjct: 205 YLEGWKEIEFEVVRDSHDNVAAVVCMENIDPMGYHTGDSIVVAPC-QTLTDDEYQTARDI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +AIG  G        +    + + +E N  P M+  S     +  +GY    +  
Sbjct: 264 SIAVERAIGLIGEGNVQVAVNYAGPEQYAIETN--PRMSRSS--ALASKASGYPLAYIAA 319

Query: 291 WM 292
            +
Sbjct: 320 KL 321


>gi|317051752|ref|YP_004112868.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurispirillum
           indicum S5]
 gi|316946836|gb|ADU66312.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurispirillum
           indicum S5]
          Length = 447

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 39/231 (16%), Positives = 75/231 (32%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++         D      +G   E+     I     I +         L  DK R++Q 
Sbjct: 64  KNIIATAELTNVDAIHPG-YGFLAENANFANICNDCTIKFIGPTANHITLMGDKARARQT 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV       I   R  +++   I  P +IK   GG   G+ + + D S+     
Sbjct: 123 MMEAGVPVIQGSYGTITDERDALETAREIGYPVIIKASAGGGGKGMRIARNDASLQSSFN 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + +           Y++        +       ++            ++          
Sbjct: 183 MAQNEARNAFNDASVYIEKYIEEPKHIEFQVFGDSQGNAVHLGERDCSIQRRHQKLLEEA 242

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     D+ K +   A  A + IG       +FL D    + F++E+N +
Sbjct: 243 PSPFLTPDLRKRMGEAAVKALKHIGYENAGTVEFLVDKH-GEFFFIEMNTR 292


>gi|195354524|ref|XP_002043747.1| GM16413 [Drosophila sechellia]
 gi|194128947|gb|EDW50990.1| GM16413 [Drosophila sechellia]
          Length = 689

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K       L  + + +          ++    +  
Sbjct: 173 ADIIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSSVLLERYVRSPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + + +E+   A  A +A+G
Sbjct: 233 HVEVQVFADHYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D       ++E+N       P +T +            +  +L+ W + 
Sbjct: 293 YVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEWQIR 340

Query: 295 DAS 297
            A+
Sbjct: 341 IAA 343


>gi|159029118|emb|CAO90107.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 363

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           + + V  +A   H A+GCR  S  DF  DP   + ++LE  +       S+   MA  AG
Sbjct: 266 VTQRVWAIAKQCHVALGCRHYSLFDFRIDPH-GQPWFLEAGLYCSFAQKSVISMMAQAAG 324

Query: 283 YSFRELLLWMVEDA 296
            S  +L   MV+ A
Sbjct: 325 ISLTDLFQNMVQMA 338


>gi|157364034|ref|YP_001470801.1| hypothetical protein Tlet_1172 [Thermotoga lettingae TMO]
 gi|157314638|gb|ABV33737.1| protein of unknown function DUF201 [Thermotoga lettingae TMO]
          Length = 374

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 97/303 (32%), Gaps = 54/303 (17%)

Query: 22  CASALEDAGFKVSQIDVDR----------------------SVGLVLAHLKPDLAFNVLH 59
               +  +G+ V  I ++R                      +V  ++   K D+      
Sbjct: 17  VIRHIGKSGYGVYAISLNRFSIGGSSKYVKKNYFMRDLELQTVLNIIDKNKIDIVIPC-- 74

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ--VVSSCGVPVCPSILVNRFT 117
            N      +   ++  E       I +  L  DK+R+ Q     +  +P           
Sbjct: 75  -NEKSVRFLSKHIDKFETTIVTPNIDSFELCEDKLRTLQLAESLNIRIPKTHYFHNLAEL 133

Query: 118 MDSQHLISP-PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGI 175
            ++   I   P V+KP K   S GII +K    I   L        G  L+ E    DG 
Sbjct: 134 NENLDKIDFSPAVLKPRKSSGSRGIIYVKSKDEILGVLNNDYIEKFGMPLVQEYIPQDGE 193

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLA 234
            +    +   S  +            +  K          P+ + + IY E   ++    
Sbjct: 194 SIGVSFLYYKSNKIM----------EFCHKRIRQYPPTGGPSTLAVSIYDEEAIKIGEKL 243

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF---RELLLW 291
             A+   G++  +F  DP ++++  +E+N           P M    G +     + +  
Sbjct: 244 LNALKWNGLAMVEFKRDPTTKELVLMEVN-----------PRMWGTIGLALFSGADFIRA 292

Query: 292 MVE 294
           +VE
Sbjct: 293 IVE 295


>gi|99080473|ref|YP_612627.1| carbamoyl phosphate synthase large subunit [Ruegeria sp. TM1040]
 gi|99036753|gb|ABF63365.1| carbamoyl-phosphate synthase large subunit [Ruegeria sp. TM1040]
          Length = 1120

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFNVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VNRFTMDSQH---------------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     D+ +                I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKDNGNADLEAGVALALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQMMRTASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 61/162 (37%), Gaps = 10/162 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL  
Sbjct: 734 AEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYINEAVVVSGDSPVLLDSYLSGAVELDV 793

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +  ++ + ++  +F   +A+ 
Sbjct: 794 DAICDGKDVHVAGIMQHIEEAG---VHSGDSACSLPPYSLDKEVIERIKEQSFALAKALN 850

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             G+    F       +++ +E+N +   T     P +A   
Sbjct: 851 VVGLMNVQFAI--KDNEIYLIEVNPRASRT----VPFVAKAT 886


>gi|167764464|ref|ZP_02436585.1| hypothetical protein BACSTE_02848 [Bacteroides stercoris ATCC
           43183]
 gi|167697133|gb|EDS13712.1| hypothetical protein BACSTE_02848 [Bacteroides stercoris ATCC
           43183]
          Length = 1094

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIHTVLINPNIATVQTSEGVADRIYFLPVTPYFVEKVIEKERPDGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + +     +    + + A   + D+    Q ++   V    S  
Sbjct: 88  AFGGQTALNCGVELYKEGVFGKYGVEVLGTPVQAIIDTEDREIFVQKLNEINVKTIRSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +  +   +L   +++   Q+L+E+
Sbjct: 148 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEDELN--VLVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|156146874|gb|ABU53449.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146878|gb|ABU53451.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146880|gb|ABU53452.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146888|gb|ABU53456.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146890|gb|ABU53457.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146902|gb|ABU53463.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146014|gb|ABU53068.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711693|gb|ABR02273.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711727|gb|ABR02290.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711729|gb|ABR02291.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711749|gb|ABR02301.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711775|gb|ABR02314.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711779|gb|ABR02316.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711787|gb|ABR02320.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711791|gb|ABR02322.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|222080811|ref|YP_002542539.1| urea carboxylase [Agrobacterium radiobacter K84]
 gi|221725490|gb|ACM28579.1| urea carboxylase [Agrobacterium radiobacter K84]
          Length = 1135

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +  +S+                    Y++       
Sbjct: 104 ATDIGYPLMLKSTAGGGGIGMQLCEDPESLKAVFDSVQRTARASFGDARVYLERFVAKAR 163

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    D +   +   A     +  
Sbjct: 164 HVEVQIFGDGNGRVIALGERDCSLQRRNQKVIEETPAPGLSDAVRARLHAAAVALGTSAH 223

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 224 YRSAGTVEFIYDRAREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 271

Query: 295 DAS 297
            A+
Sbjct: 272 QAA 274


>gi|156146866|gb|ABU53445.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQDELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146002|gb|ABU53062.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156405054|ref|XP_001640547.1| predicted protein [Nematostella vectensis]
 gi|156227682|gb|EDO48484.1| predicted protein [Nematostella vectensis]
          Length = 1200

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 7/228 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +    + D      +G   E            + +         +  DK+ ++++ 
Sbjct: 114 EIIRIAKERECDAIHPG-YGFLSERADFAHACTKSGVIFIGPSPQVVHMMGDKLEARKMA 172

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       T +           P + K   GG   G+ VI K + +      
Sbjct: 173 INSGVPVVPGTENPIRTAEEAKQFCEEHGLPVITKAAYGGGGRGMRVIWKMEDLEEFFNL 232

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +S+  +        +++        +    +      V         ++        + P
Sbjct: 233 ASNEAYAAFGDGSMFIEKFIEKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVIEIAP 292

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A    D I + +   A    +A+G       +FL D      +++E+N
Sbjct: 293 APHLDDAIRQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 339


>gi|89055206|ref|YP_510657.1| acetyl-CoA carboxylase biotin carboxylase subunit [Jannaschia sp.
           CCS1]
 gi|88864755|gb|ABD55632.1| acetyl-CoA carboxylase biotin carboxylase [Jannaschia sp. CCS1]
          Length = 448

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 67/221 (30%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E   I +         +  DK+ +K+     G+P  P    
Sbjct: 77  AIHPGYGFLSENAAFVQAVEDHGIKFIGPSAEHIRMMGDKITAKETALRLGIPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +               P ++K   GG   G+ + K    I      + +     + + +
Sbjct: 137 GVPTVEEARQIGEEFGYPVIVKATAGGGGRGMKLAKSADEIDTAFKSARTEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  ++ 
Sbjct: 197 VYIEKYLGTPRHIEVQVFGDGKGHAVHLGERDCSLQ----RRHQKVFEEAPGPSITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +   A   +G  G    +FL+   + + +++E+N +
Sbjct: 253 DHIGMICANAVGELGYEGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|146276729|ref|YP_001166888.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17025]
 gi|145554970|gb|ABP69583.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17025]
          Length = 1154

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 49/153 (32%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
              T      I  P ++K   GG   G+  I  +  +   + +            E Y++
Sbjct: 144 MDETRRQAAEIGYPLMLKASWGGGGRGMRPINSEAELADKVREGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + L    +    L     ++         ++  +       PA     D   E+  L  
Sbjct: 204 KMILRARHVEVQILGDKYGSIYHLYERDCTVQRRNQKVVERAPAPYLTDDQRAEICELGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +  +     +FL D  + K +++E+N +
Sbjct: 264 RICAHVNYKCAGTVEFLMDMDTEKFYFIEVNPR 296


>gi|319783251|ref|YP_004142727.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
 gi|317169139|gb|ADV12677.1| acetyl-CoA carboxylase, biotin carboxylase [Mesorhizobium ciceri
           biovar biserrulae WSM1271]
          Length = 447

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 27/257 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    I +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILAAHNITFIGPSGDHIRIMGDKIEAKRTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +   +        I  P +IK   GG   G+ V   +  + + L  +S+        
Sbjct: 135 DGAVTDQKEARRIAAEIGYPVIIKASAGGGGRGMKVALTEADLEVALQTASTEAGAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKE 226
              Y++        +                     L+          P+     +    
Sbjct: 195 DAVYIEKYLEKPRHIEVQVFGDGFGRGVHFGERDCSLQRRHQKVWEEAPSPALNAEERAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280
           +  +   A   +G  G    +FL+   + + +++E+N +              +      
Sbjct: 255 IGGICAKAIADLGYSGAGTIEFLY--ENGEFYFIEMNTR----------LQVEHPVTEAI 302

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+   +  AS
Sbjct: 303 TGI---DLVHEQIRVAS 316


>gi|313681642|ref|YP_004059380.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Sulfuricurvum kujiense DSM 16994]
 gi|313154502|gb|ADR33180.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Sulfuricurvum kujiense DSM 16994]
          Length = 485

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 101/322 (31%), Gaps = 64/322 (19%)

Query: 19  GKACASALEDAGFK--VSQIDVDRSVGLVLAHLKPDLAFNVL------------------ 58
                 A ++ G K  V   +VD +   V    K D  + ++                  
Sbjct: 18  ALRIIRACKELGIKSVVVFSEVDVNGVWV---RKADECYPIMGDPIAAYLDYERIISLAK 74

Query: 59  ----------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
                     +G   E            I +        AL  DKM SK  +   GVP+ 
Sbjct: 75  KADCDAIHPGYGFLSESAEFAQACIDNGIIFIGPKPEHIALFGDKMASKVAMREVGVPML 134

Query: 109 PSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SS 159
           P        ++    I+     P +IK   GG   G+ +++K +        +       
Sbjct: 135 PGTDEPIDNIEDAEKIAIDIGFPIIIKAAFGGGGRGMRIVEKAEDFKEMYESATNEALRF 194

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           ++ G+  + +   +   +   ++ D   ++  +            +             +
Sbjct: 195 FSRGEVFIEKYLKNPRHIEIQIVADKYGNIVHLGDRDCSIQ----RRHQKVIEIAPSPLL 250

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIF 274
             +  +E+ R++  A   +G   +   ++L D     ++++E+N       P    +S  
Sbjct: 251 NHETRRELYRISKKAMYRLGYESVGTIEYLVDQDDN-IYFIEMNTRVQVEHPVTEAIS-- 307

Query: 275 PEMAAYAGYSFRELLLWMVEDA 296
                  G    +L+  M++ A
Sbjct: 308 -------GI---DLIQRMIQIA 319


>gi|293609302|ref|ZP_06691604.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292827754|gb|EFF86117.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|325122570|gb|ADY82093.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 455

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +       L    +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILEACVHACQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|213963569|ref|ZP_03391822.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga
           sputigena Capno]
 gi|213953849|gb|EEB65178.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga
           sputigena Capno]
          Length = 450

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  + K++ +   L  +       + +    + +  VD  
Sbjct: 148 AAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALNSAMQEAGAAFGNDAMYMEKLIVDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +     +       +  D+ K +   A  A 
Sbjct: 208 HIEIQIVGDQYGKACHLSERDCSIQ----RRHQKLTEETPSPFMTDDLRKRMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G    +FL D   R  +++E+N +
Sbjct: 264 EFIKYEGAGTVEFLVD-KDRNFYFMEMNTR 292


>gi|156146824|gb|ABU53424.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146864|gb|ABU53444.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PA+I  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPARISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711643|gb|ABR02248.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634613|emb|CAB64497.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|77025002|gb|ABA61428.1| carbamoylphosphate synthase large subunit [uncultured marine group
           II euryarchaeote HF70_39H11]
          Length = 1118

 Score = 53.7 bits (127), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 90/303 (29%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL   G++V  ++ + +                     V  +L   KPD    
Sbjct: 29  SGSQACRALRADGYEVVLVNSNPATIQNDPEMADRIYIEPLLPDVVKRILEMEKPDALLA 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         +     L E+     G    ++   + R         + +  S  + 
Sbjct: 89  GMGGQTALNIASNLAHSGALAELGVELIGCNLQSIDEAEDRDLFNQVCEEIDLPISQAMA 148

Query: 115 RFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             ++D      + L   P +I+P      LG         +     Q    +   Q+LIE
Sbjct: 149 CNSIDEVLAAAEELGKFPILIRPAFTLGGLGGGTAWNTGELVEIASQGILHSQIGQVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +                 D ++ ++ 
Sbjct: 209 ESILGWQEFEYEVMRDANDNCTIVCTMENIDPMGVHTGESVVVAPAQTLSDRD-HQGLRD 267

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    + +  +G     F  +  + +   +E+N  P ++  S     +   GY    + 
Sbjct: 268 AALRLIRRLDIKGGCNVQFTVNQDTGEYRVIEVN--PRVSRSS--ALASKATGYPIARMA 323

Query: 290 LWM 292
             +
Sbjct: 324 ALI 326



 Score = 42.2 bits (97), Expect = 0.087,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 89/300 (29%), Gaps = 41/300 (13%)

Query: 24  SALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFNVLHGNF 62
            A+ +AG +   +         D D S            V  +L     D       G  
Sbjct: 623 QAIREAGHEAILVNNNPETVSTDFDTSDRLYFDPLTTECVSEILLREGADGILLQFGGQT 682

Query: 63  GEDGLVQAILELLE-------IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             +  +     +              +   A   + D+ R +       + +        
Sbjct: 683 AINLALPLDSRMEHLSEQGLTCSMLGTSPDAVDEASDRERFEAFGKRSIIRLPEGRTGKT 742

Query: 116 FTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +++P       G+ ++  D  +    +  +       LL+++Y+ 
Sbjct: 743 PDSIRAAVAEIGYPVLVRPSYVLGGRGMEILTDDAQL-ETYMSDAYIAPDKPLLVDEYLG 801

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
           G      +  DA  D  ++ V     +  E    S +ST  +P +   D I  +V     
Sbjct: 802 G---AIELDVDAVCDGEDVLVGAVMEHLEEAGIHSGDSTCFIPTQNVSDGILTKVHEWTK 858

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +  RG     F       +++ LE+N +   T    FP +A   G     +   +
Sbjct: 859 AIGLGLNIRGCFNIQFCICR--DELYVLEVNPRGSRT----FPFVAKATGIPLARIAAHI 912


>gi|332830552|gb|EGK03173.1| carbamoyl-phosphate synthase, large subunit [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 1072

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSEGSADKIYFLPITPYFVEKVIQKEKPEGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G       ILE   +    + + A   + D+    + +    V      +
Sbjct: 87  AFGGQTALNCGVQLYEGGILEKYNVRVLGTPVQAIMDTEDRDLFVKKLDQIDVKTIKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG      +Q +   +L   +  +  QLL+E+
Sbjct: 147 VGSIEDAVTAAAELGYPIIVRAAYALGGLGSGFCDNEQELR--VLAEKALAYSSQLLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDKYDNCMTVCNMENFDPLGIHTGESIVVAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 SIRIVKHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|161788878|dbj|BAF95073.1| carbamoyl-phosphate synthetase II [Parabodo caudatus]
          Length = 1826

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 95/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L++ G +   ++ +                       V  V+   +PD    
Sbjct: 398 SGSQCLKSLKEEGIETVLVNPNIATVQTDDAMADHIYFVPVTPECVERVIEKERPDGIL- 456

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-------GVPVCP 109
           +  G          + E+      +  +L + +S   +   + +           V    
Sbjct: 457 LGWGGQTALNCGIQLNEMGVFKKYNVRVLGTQVSTIAVTEDRELFRDALLQIGEHVAESH 516

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +       M +   I  P +++        G  ++  ++ +   +  + +     Q+LIE
Sbjct: 517 AATSLEDAMAAAKRIGFPVMVRAAFCLGGQGSGIVNTEEELRSKVTVALATAP--QVLIE 574

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q V G            +    I V   + +     ++  ++       +  D Y  ++ 
Sbjct: 575 QSVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGIHTGESTVVAPSQTLSNDEYHMLRS 633

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 634 ASIKIIRHLGVVGECNVQYGLDPYSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 689

Query: 290 LWM 292
             +
Sbjct: 690 TKL 692



 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 83/289 (28%), Gaps = 28/289 (9%)

Query: 22   CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
                L   G KV  I+ +                      S+  +L   K +     L G
Sbjct: 947  VTRELRRLGHKVIMINYNPETVSTDYDECDRLYFEELSLESITDILRKEKTNGIVISLGG 1006

Query: 61   NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               ++  ++       I  T    +  A   +K            P   S          
Sbjct: 1007 QIVQNLALKLKASGFPILGTDPLSIDMAEDRNKFSKMCDDIGVSQPEWISAKSLTEVEAF 1066

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               +  P +++P    S   + VI   + I      ++  +    +++ +Y +       
Sbjct: 1067 CKKVDFPCLVRPSYVLSGSAMSVISNMEDINKYFTSATIVSGEHPVVVSKYYENALEYDL 1126

Query: 181  VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
             +      +   ++ +    +         +  + P     D+ K +   A      +  
Sbjct: 1127 DIVAHCGKILCYSISEHIEPAGVHSG--DATMLLPPRNRDKDVMKALYEAACKIADRLQV 1184

Query: 241  RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             G      L  P  RK+  +E NV+      S  P ++   G SF  ++
Sbjct: 1185 TGPMNVQLLITP-DRKLKVIEANVR---CSRS-VPFVSKTLGISFPAVM 1228


>gi|3821389|emb|CAA13261.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821421|emb|CAA13277.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711419|gb|ABR02136.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711475|gb|ABR02164.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711477|gb|ABR02165.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 71/143 (49%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY   N T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNNITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|6634609|emb|CAB64495.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711623|gb|ABR02238.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EGKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRILVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|218187207|gb|EEC69634.1| hypothetical protein OsI_39029 [Oryza sativa Indica Group]
          Length = 740

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IKP  GG   G+ ++++ +     +L +         +    V+       
Sbjct: 185 ANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINTLLVEKYITQPR 244

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +           V         L+          PA      ++  +   A  A +A+G
Sbjct: 245 HIEVQIFGDQHGNVIHLYERDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVG 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D LS + +++E+N +
Sbjct: 305 YYSAGTVEFIVDTLSGEFYFMEMNTR 330


>gi|195452540|ref|XP_002073398.1| GK14105 [Drosophila willistoni]
 gi|194169483|gb|EDW84384.1| GK14105 [Drosophila willistoni]
          Length = 701

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 174 AKIIGFPLMIKAVRGGGGKGMRIAEKPEDFLSALNSARTESQKSFGDSSVLLERYVRSPR 233

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 234 HVEVQVFADQYGEAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 293

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 294 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 343

Query: 297 S 297
           +
Sbjct: 344 A 344


>gi|156146838|gb|ABU53431.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146840|gb|ABU53432.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146844|gb|ABU53434.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146846|gb|ABU53435.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146850|gb|ABU53437.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146852|gb|ABU53438.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146854|gb|ABU53439.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146856|gb|ABU53440.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146876|gb|ABU53450.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|156146810|gb|ABU53417.1| D-alanylalanine synthetase [Streptococcus oralis]
 gi|156146814|gb|ABU53419.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EKKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711703|gb|ABR02278.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146032|gb|ABU53077.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|115489478|ref|NP_001067226.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|110810425|sp|Q2QMG2|MCCA_ORYSJ RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
 gi|108862933|gb|ABA99831.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113649733|dbj|BAF30245.1| Os12g0605800 [Oryza sativa Japonica Group]
 gi|215768297|dbj|BAH00526.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222617434|gb|EEE53566.1| hypothetical protein OsJ_36794 [Oryza sativa Japonica Group]
          Length = 737

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IKP  GG   G+ ++++ +     +L +         +    V+       
Sbjct: 185 ANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINTLLVEKYITQPR 244

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +           V         L+          PA      ++  +   A  A +A+G
Sbjct: 245 HIEVQIFGDQHGNVIHLYERDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVG 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D LS + +++E+N +
Sbjct: 305 YYSAGTVEFIVDTLSGEFYFMEMNTR 330


>gi|108862934|gb|ABA99832.2| Methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 674

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IKP  GG   G+ ++++ +     +L +         +    V+       
Sbjct: 185 ANKIGYPVLIKPTHGGGGKGMRIVQRPEDFVDSVLSAQREAAASFGINTLLVEKYITQPR 244

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +           V         L+          PA      ++  +   A  A +A+G
Sbjct: 245 HIEVQIFGDQHGNVIHLYERDCSLQRRHQKIIEEAPAPNVTAQFRSHIGEAAVSAAKAVG 304

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D LS + +++E+N +
Sbjct: 305 YYSAGTVEFIVDTLSGEFYFMEMNTR 330


>gi|110634068|ref|YP_674276.1| acetyl-CoA carboxylase biotin carboxylase subunit [Mesorhizobium
           sp. BNC1]
 gi|110285052|gb|ABG63111.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Chelativorans sp. BNC1]
          Length = 447

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/323 (12%), Positives = 94/323 (29%), Gaps = 64/323 (19%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G +   +    D D                       ++  +LA  +  
Sbjct: 14  ALRVLRACKELGIQTVAVHSTADADAMHVRLADESVCIGPPASRESYLNIHQILAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     IL    + +            DK+ +K+     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENAKFAEILAAHNVTFIGPSAEHIRTMGDKIEAKRTAKRLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +   R        +  P +IK   GG   G+ V + +  +   L  + +     +
Sbjct: 133 GSEGAVRDEREAKRIAAEVGYPVLIKASAGGGGRGMKVARNEAGLAEALATARTEAGAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V+GD + +   +            +             + 
Sbjct: 193 GDDAVYIEKYLEKPRHIEVQVVGDGAHNAVHLGERDCSLQ----RRHQKVWEEANSPALN 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           ++   ++      A   +G  G    +FL+   + + +++E+N +              +
Sbjct: 249 VEQRMKIGETVANAMAELGYSGAGTIEFLY--ENGEFYFIEMNTR----------LQVEH 296

Query: 281 ------AGYSFRELLLWMVEDAS 297
                  G    +L+   +  AS
Sbjct: 297 PVTEAITGI---DLVHEQIRVAS 316


>gi|330444967|ref|ZP_08308621.1| acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
 gi|328493085|dbj|GAA03118.1| acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           leiognathi subsp. mandapamensis svers.1.1.]
          Length = 447

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 83/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESVCIGPARGIDSYLNIPRIISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ +  +   +  +       +
Sbjct: 134 SDGPLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRGENELTEAIAMTRAEAKSCF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|157736856|ref|YP_001489539.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315636024|ref|ZP_07891283.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
 gi|157698710|gb|ABV66870.1| acetyl CoA carboxylase, biotin carboxylase subunit [Arcobacter
           butzleri RM4018]
 gi|315479680|gb|EFU70354.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter butzleri
           JV22]
          Length = 483

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 95/284 (33%), Gaps = 33/284 (11%)

Query: 32  KVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
            V Q  +D S +  +    + D      +G   E+       E   I +         L 
Sbjct: 56  DVVQAYLDYSKIISIAKKAECDAIHPG-YGFLSENADFARACEENGIIFIGPKPEHIELF 114

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DKM SK  +   GVPV       I+           I  P +IK   GG   G+ ++++
Sbjct: 115 GDKMASKVAMKKVGVPVLEGTDEPIIDIEEGAKIAKQIGFPVIIKAAFGGGGRGMRIVRE 174

Query: 147 DQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           ++                +  G+  + +   +   +   V+ D   +V  +         
Sbjct: 175 EKDFKELFESASNEAKKYFGRGEAFIEKYVENPRHIEIQVIADKYGNVLHLGERDCSIQR 234

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +  +  L  +   ++Y+   +  F     +G   +   +FL DP    ++++E
Sbjct: 235 RHQKVIEIAPSPRLNNEARKELYRIATKAMFK----LGYESVGTVEFLLDPDDN-IYFIE 289

Query: 262 INV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           +N       P +T              +  +++  M++ A   +
Sbjct: 290 MNTRVQVEHP-VTET-----------ITGVDIIQRMIQIAEGDK 321


>gi|156146868|gb|ABU53446.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146056|gb|ABU53089.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|3821379|emb|CAA13256.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|6634554|emb|CAB64456.1| D-alanine--D-alanine ligase [Streptococcus oralis]
 gi|6634615|emb|CAB64498.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|38520892|emb|CAE75669.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|40204832|emb|CAF02017.1| D-alanine:D-alanine ligase [Streptococcus mitis]
 gi|148711667|gb|ABR02260.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711743|gb|ABR02298.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711809|gb|ABR02331.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146012|gb|ABU53067.1| D-alanylalanine synthetase [Streptococcus mitis]
 gi|156146060|gb|ABU53091.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821401|emb|CAA13267.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVTVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|298208583|ref|YP_003716762.1| pyruvate carboxylase [Croceibacter atlanticus HTCC2559]
 gi|83848506|gb|EAP86375.1| pyruvate carboxylase [Croceibacter atlanticus HTCC2559]
          Length = 1150

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI+++  +     +S             +++       
Sbjct: 150 AEAIGYPVMLKAASGGGGRGMRVIREEDELRRAFNESKREALNAFGDDTVFLEKFVENPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      +         ++          P+      I +++ + A    +A+ 
Sbjct: 210 HIEIQIVADNHGNMVHLFERDCSVQRRYQKVIEFAPSYDLDTSIKEDLYKYAVKICKAVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 270 YNNIGTVEFLVD-DDGSIYFIEVNPR 294


>gi|330817868|ref|YP_004361573.1| Phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           gladioli BSR3]
 gi|327370261|gb|AEA61617.1| Phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           gladioli BSR3]
          Length = 404

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 80/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYANAPGHQVAHRAHVIDMTDAAALRALVEAEQPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +   V     L E+  T      +       R                       
Sbjct: 87  EAIATDALAVIESERLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSIEEFR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVASIGFPCVVKPVMSSSGKGQSVLRGEADVEPAWQHAMAGGRVNHGRVIVEGFIDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    ++            L+ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASKETRTYFCDPVGHLQVAGDYVESWQPQPMSPIARERSREIAHQVTT 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDEVWFSEVSPRP 294


>gi|148645017|gb|ABR01040.1| AccC [uncultured Geobacter sp.]
          Length = 221

 Score = 53.7 bits (127), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/220 (14%), Positives = 72/220 (32%), Gaps = 17/220 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H   G   E+     + E   I +      +  +  DK+ ++Q V   GVP+      
Sbjct: 7   AIHPGYGFLSENANFAEVCEKCGITFIGPSPESMRIMGDKISARQAVIKQGVPILPGTKE 66

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P +IK   GG   G+ ++    ++P           + + + +
Sbjct: 67  GVHTVEDAVKVAKEIGFPVIIKATAGGGGRGMKIVHSQATLPNAFATARAEAQAGFGNPE 126

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++ D   +V  +            +                ++ 
Sbjct: 127 VYIEKYCEQPRHVEIQILADKHGNVIHLGERDCSIQ----RRHQKLLEEAPSTISTPELR 182

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             +   A  A  A+G   +   +FL D  +   +++E+N 
Sbjct: 183 AAMGDAAVKAAAAVGYNSVGTVEFLVDKHNN-FYFMEMNT 221


>gi|322497963|emb|CBZ33038.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 1842

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 93/314 (29%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++  +      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMALSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDELGVPQPEWISATSVEQVHEFCDTVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEAATEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL      ++  +E NV+   +  S  P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GQLRVIEANVR---SSRS-VP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 97/303 (32%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +++     + +   I  P +++        G  +++  + +   +  +       Q+L+E
Sbjct: 513 AVMSVEEAVAASKDIGFPMMVRAAYCLGGQGSGIVENMEELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGVHTGESIVVAPSQTLSNDEFHMLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|6634611|emb|CAB64496.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711679|gb|ABR02266.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711719|gb|ABR02286.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711721|gb|ABR02287.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711723|gb|ABR02288.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711757|gb|ABR02305.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711759|gb|ABR02306.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156145994|gb|ABU53058.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|148711765|gb|ABR02309.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|332876887|ref|ZP_08444641.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
 gi|332685170|gb|EGJ58013.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           sp. oral taxon 329 str. F0087]
          Length = 450

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  + K++ +   L  +       + +    + +  VD  
Sbjct: 148 AAEIGYPVMLKATAGGGGRGMRDVWKEEDLEKALDSAMQEAGAAFGNDAMYMEKLIVDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +     +       +  D+ K +   A  A 
Sbjct: 208 HIEIQIVGDQYGKACHLSERDCSIQ----RRHQKLTEETPSPFMTEDLRKRMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G    +FL D   R  +++E+N +
Sbjct: 264 EYIKYEGAGTVEFLVD-KDRNFYFMEMNTR 292


>gi|323489486|ref|ZP_08094713.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Planococcus donghaensis MPA1U2]
 gi|323396617|gb|EGA89436.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Planococcus donghaensis MPA1U2]
          Length = 449

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G++  + +Q++              +      L +   D  
Sbjct: 147 AEAIGYPLMLKASAGGGGIGMVRCESEQALTQQFESVKNRAKAYFGDDVVYLEKFIADAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD   ++  +            K    + +  LP     ++ + +   A  A 
Sbjct: 207 HIEVQIFGDHHGNLVHLYERNCSVQRRNQKVIEESPSPNLPQ----EVRERLCEAALQAG 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+        +F+ D  + + ++LE+N +
Sbjct: 263 KAVNYTNAGTVEFIVDA-NNEFYFLEMNTR 291


>gi|320584028|gb|EFW98240.1| Bifunctional carbamoylphosphate synthetase, putative [Pichia
           angusta DL-1]
          Length = 2234

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 456 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDAIYC 515

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  +Q   E   +     G     +   + R     S   +    +      
Sbjct: 516 TFGGQTALNVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDEIGEKCAKSQTAS 575

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      +Q +    L   ++    Q+L+E+ +
Sbjct: 576 SIDEALAAVKEIGFPVIVRAAYALGGLGSGFADNEQELMD--LCQKAFAASPQVLVEKSM 633

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 634 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 692

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +PLS +   +E+N +  ++  S     +   GY   
Sbjct: 693 NVIRHLGVVGECNIQYALNPLSEEYCIIEVNAR--LSRSS--ALASKATGYPLA 742


>gi|262375923|ref|ZP_06069154.1| urea carboxylase [Acinetobacter lwoffii SH145]
 gi|262309017|gb|EEY90149.1| urea carboxylase [Acinetobacter lwoffii SH145]
          Length = 1199

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/319 (12%), Positives = 91/319 (28%), Gaps = 51/319 (15%)

Query: 19  GKACASALEDAGFKVSQID----------VDRSVGLVLAHLKP----------------- 51
                  L+  G     I           +D  + + L   KP                 
Sbjct: 14  AIRAIRTLKKMGITSIAIYSETDRYAQHVIDADIAVSLEGTKPSDTYLSIEKLIAAAKNT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             +  F   +G   E        E   I +             K R++++ ++  VP+ P
Sbjct: 74  GAEAIFPG-YGFLSESADFARACEENNIAFMGPTPEQILEFGLKHRARELAAAANVPMTP 132

Query: 110 S---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      +     I  P ++K   GG  +G+      +++                
Sbjct: 133 GTGLLNSLDEALAEAEKIGYPIMLKSTAGGGGIGLTRCDDAEALREAYESVKRLGEQFFK 192

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
               +++        +        +  V         L+  +       PA    +   +
Sbjct: 193 DAGVFLERFIDKARHVEVQIFGDGQGQVVALGERDCSLQRRNQKVVEETPAAQLPEATRQ 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
           ++ + A    +++  R     +F++D    + ++LE+N       P         EM   
Sbjct: 253 KLHQAAVELGKSVKYRSAGTVEFIYDAARDEFYFLEVNTRLQVEHP-------VTEM--V 303

Query: 281 AGYSFRELLLWMVEDASCL 299
            G    +L+  M++ A+  
Sbjct: 304 TGL---DLIECMLKVAAGD 319


>gi|217977540|ref|YP_002361687.1| pyruvate carboxylase [Methylocella silvestris BL2]
 gi|217502916|gb|ACK50325.1| pyruvate carboxylase [Methylocella silvestris BL2]
          Length = 1147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 71/231 (30%), Gaps = 6/231 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V    K D      +G   E            I +            +K+ ++ +
Sbjct: 67  EEVIRVAREAKVDAIHPG-YGFLSESPEFADACAEAGIIFIGPSPQTMRELGNKVAARNI 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               G PV P+             ++     P ++K   GG   G+  I+ +  +   +L
Sbjct: 126 AVRSGAPVMPATDPLPDDPAEIKRLALGVGYPVMLKASWGGGGRGMRPIESEDKLLDAVL 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +           E Y++ + L    +    L  +   +         ++          
Sbjct: 186 SAKREAKNAFGKDEVYLEKLVLRARHVEVQILGDSHGNLVHLFERDCSIQRRHQKVVERA 245

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA    +   + +   A    +A    G    +FL D  + + +++E+N +
Sbjct: 246 PAPYLDEATRQGLCEAALKIGRATKYCGAGTVEFLLDADTNQFYFIEVNPR 296


>gi|6434093|emb|CAB60643.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634603|emb|CAB64492.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|48525842|gb|AAT45131.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|148711701|gb|ABR02277.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711745|gb|ABR02299.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711747|gb|ABR02300.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711751|gb|ABR02302.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821358|emb|CAA13246.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|237723437|ref|ZP_04553918.1| pyruvate carboxylase subunit A [Bacteroides sp. D4]
 gi|229438193|gb|EEO48270.1| pyruvate carboxylase subunit A [Bacteroides dorei 5_1_36/D4]
          Length = 419

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 64  CNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 123

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 124 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVN 183

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 184 YSGAGTIEFLVD-KNRDFYFLEMNTR 208


>gi|227356547|ref|ZP_03840934.1| phosphoribosylglycinamide formyltransferase [Proteus mirabilis ATCC
           29906]
 gi|227163303|gb|EEI48230.1| phosphoribosylglycinamide formyltransferase [Proteus mirabilis ATCC
           29906]
          Length = 399

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 77/269 (28%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                      +++  ++   KPD     +
Sbjct: 24  GKEVIIECQRLGIETIAVDRYANAPAMHVAHRHYVVNMLDSQALKQIITQEKPDFLVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATSLLVELENNGQKVVPCARAVKLTMDREGIRRLAAETLHLLT-SPYQFVDDEAAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  VI+ +Q +      S      G   +I + +   + 
Sbjct: 143 KAAVEIGFPCIVKPVMSSSGKGQSVIRSEQDLTSAWTYSQEGGRAGQGRVIVEKMIPFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P K+      + Q +A    + 
Sbjct: 203 EITLLTIRAIDGIHFCEPIGHRQE-----KGDYRASWQPQKMSDIALAKAQHIASKVVEN 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +VF+ E++ +P
Sbjct: 258 LGGYGLFGVELFI--QGDEVFFNEVSPRP 284


>gi|146082585|ref|XP_001464549.1| carbamoyl-phosphate synthase [Leishmania infantum JPCM5]
 gi|134068642|emb|CAM66940.1| putative carbamoyl-phosphate synthase [Leishmania infantum JPCM5]
          Length = 1842

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 93/314 (29%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++  +      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMALSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDELGVPQPEWISATSVEQVHEFCDTVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEAATEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL      ++  +E NV+   +  S  P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GQLRVIEANVR---SSRS-VP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 97/303 (32%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +++     + +   I  P +++        G  +++  + +   +  +       Q+L+E
Sbjct: 513 AVMSVEEAVAASKDIGFPMMVRAAYCLGGQGSGIVENMEELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGVHTGESIVVAPSQTLSNDEFHMLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|326481403|gb|EGE05413.1| methylcrotonoyl-CoA carboxylase subunit alpha [Trichophyton equinum
           CBS 127.97]
          Length = 712

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 115 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 174

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 175 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAKSSFGDDTMLIEK 234

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 235 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 294

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 295 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|326468792|gb|EGD92801.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton
           tonsurans CBS 112818]
          Length = 712

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 115 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 174

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 175 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAKSSFGDDTMLIEK 234

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 235 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 294

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 295 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|327301085|ref|XP_003235235.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton rubrum
           CBS 118892]
 gi|326462587|gb|EGD88040.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Trichophyton rubrum
           CBS 118892]
          Length = 712

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 115 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 174

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 175 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAKSSFGDDTMLIEK 234

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 235 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 294

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 295 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 326


>gi|307133187|ref|YP_003885203.1| Urea carboxylase [Dickeya dadantii 3937]
 gi|306530716|gb|ADN00647.1| Urea carboxylase [Dickeya dadantii 3937]
          Length = 1197

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 49/149 (32%), Gaps = 1/149 (0%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P ++K   GG  +G+     +  +     +       +      +++    
Sbjct: 144 CEQAQRIGYPVMLKSTAGGGGIGMQRCNDEDQLADAFTRVKRLAGNNFADDGVFLEKFIA 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +           V          +  +       PA    D +  E+Q  A    Q
Sbjct: 204 RARHIEVQVFGDGRGNVIALGERDCSAQRRNQKVIEETPAPNLGDSVRAELQATAIRLCQ 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A+  R     ++++D  S++ ++LE+N +
Sbjct: 264 AVNYRSAGTVEYVYDESSKQFWFLEVNTR 292


>gi|302023963|ref|ZP_07249174.1| D-alanine--D-alanine ligase [Streptococcus suis 05HAS68]
          Length = 120

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 13/43 (30%), Positives = 23/43 (53%)

Query: 3  VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLV 45
          +L GG S+EREVS+ S ++   A+    F V    + ++   +
Sbjct: 8  LLYGGRSAEREVSVLSAESVMRAINYDKFFVKTYFISQTGDFI 50


>gi|2766003|emb|CAB16963.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821364|emb|CAA13249.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711449|gb|ABR02151.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711497|gb|ABR02175.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711503|gb|ABR02178.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711641|gb|ABR02247.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|91976665|ref|YP_569324.1| allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB5]
 gi|91683121|gb|ABE39423.1| Allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB5]
          Length = 1183

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   + ++                    Y++       
Sbjct: 147 AARIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARVYLERYVAVAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE-VQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    +  +  + + A    Q++ 
Sbjct: 207 HIEVQIFGDGKGHVVALGERDCSLQRRNQKVVEETPAPGISEEMRRRLHQAAVTLGQSVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D      ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YESAGTVEFIYDVEREDFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 QAAGD 319


>gi|317149912|ref|XP_001823475.2| hypothetical protein AOR_1_1728114 [Aspergillus oryzae RIB40]
          Length = 1086

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 8/223 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E     + +    I     G    + + DK+++KQ+ + C VP
Sbjct: 96  REHNIDSVHPG-YGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVP 154

Query: 107 ----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
               +  S    +        +  P +IK + GG   GI +++++  +   +  +++ + 
Sbjct: 155 VLPAMPRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESP 214

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              + +E+          V              +        +                +
Sbjct: 215 SQTVFVEKAAVDGFHHVEVQVVGDGIDVCHLWERDCSLQ---RRFQKVVEFAPSLMQNRE 271

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++V   A    +AI  R +   +FL     R+ ++LEIN +
Sbjct: 272 VVEQVLNAALRMAKAIRYRSLGTVEFLVHNHRREFYFLEINPR 314


>gi|300088016|ref|YP_003758538.1| carbamoyl-phosphate synthase large subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527749|gb|ADJ26217.1| carbamoyl-phosphate synthase, large subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 1073

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 91/301 (30%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGF-------------------KVSQIDV--DRSVGLVLAHLKPDLAFNV 57
           G     A+ + G                     V  I+     +V  ++   +PD     
Sbjct: 27  GTQACKAMREEGVTSVLVNSNPATIMTDEEIADVVYIEPLTVEAVTRIIERERPDGLLPT 86

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSI 111
           L G  G +  V       LE   +    + I     + D+   KQ+       +    ++
Sbjct: 87  LGGQTGLNLAVDLDNAGVLEKYNVKVLGTSIDTIRKAEDRELFKQLLLSIDEHICPSHTV 146

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    +  P +I+P       G  +               + +   Q+L+E+ 
Sbjct: 147 DSLEKARDVAFELGLPLIIRPAYTLGGTGGGIATNMDEFDDIAASGIAASPIRQILVEKS 206

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     +   + D         +F      ++  +        +    Y+ ++  +
Sbjct: 207 VAGWKEIEYEVMRDAADNCITVCNMENFDP-VGVHTGDSIVIAPSQTLTNKEYQMLRTAS 265

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     +  DP S   + +E+N  P ++  S     +   GY    +   
Sbjct: 266 INIIRALGIEGGCNIQYALDPESATYYVIEVN--PRVSRSS--ALASKATGYPIARVAAK 321

Query: 292 M 292
           +
Sbjct: 322 I 322



 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/175 (16%), Positives = 60/175 (34%), Gaps = 11/175 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             LI  P V++P        + ++     +   +  + +   G  +LI++Y+ G E+   
Sbjct: 699 ADLIGYPVVVRPSYVLGGQAMEIVNDAGELVRFMKNAMALQTGHPVLIDKYLIGKEVEVD 758

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  V P      +    +          + 
Sbjct: 759 AIADGERVLI----PGIMEHIERAGVHSGDSMAVYPGLNLSREETDTIIDYTTRIGLKLD 814

Query: 240 CRGISRSDFLFDPLSR--KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            RG+    F+        KV+ LE+N +   T     P ++   G    ++ + +
Sbjct: 815 IRGLMNIQFVITREEGQSKVYILEVNPRSSRT----VPFLSKVTGVPMVDVAVNI 865


>gi|258620657|ref|ZP_05715694.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM573]
 gi|262163832|ref|ZP_06031572.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus VM223]
 gi|262172602|ref|ZP_06040280.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus
           MB-451]
 gi|262405019|ref|ZP_06081571.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC586]
 gi|258587172|gb|EEW11884.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM573]
 gi|261893678|gb|EEY39664.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus
           MB-451]
 gi|262027812|gb|EEY46477.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio mimicus VM223]
 gi|262348858|gb|EEY97999.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC586]
          Length = 447

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EELRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|238495280|ref|XP_002378876.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
 gi|220695526|gb|EED51869.1| pyruvate carboxylase, putative [Aspergillus flavus NRRL3357]
          Length = 646

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 8/223 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E     + +    I     G    + + DK+++KQ+ + C VP
Sbjct: 74  REHNIDSVHPG-YGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVP 132

Query: 107 ----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
               +  S    +        +  P +IK + GG   GI +++++  +   +  +++ + 
Sbjct: 133 VLPAMPRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESP 192

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              + +E+          V              +        +                +
Sbjct: 193 SQTVFVEKAAVDGFHHVEVQVVGDGIDVCHLWERDCSLQ---RRFQKVVEFAPSLMQNRE 249

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++V   A    +AI  R +   +FL     R+ ++LEIN +
Sbjct: 250 VVEQVLNAALRMAKAIRYRSLGTVEFLVHNHRREFYFLEINPR 292


>gi|160878699|ref|YP_001557667.1| carbamoyl phosphate synthase large subunit [Clostridium
           phytofermentans ISDg]
 gi|189081828|sp|A9KI94|CARB_CLOPH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|160427365|gb|ABX40928.1| carbamoyl-phosphate synthase, large subunit [Clostridium
           phytofermentans ISDg]
          Length = 1066

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/301 (13%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVG--------------LVLAHLKPDLAFNV 57
           G     +L++ G  V  ++        D+ +                ++   KPD     
Sbjct: 30  GTQACRSLKEEGVTVVLVNSNPATIMTDKDIADMVYIEPLTPDVVKKIILKEKPDSVLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           L G    +  ++      L         +  L    + D++  K  +   G P   S++V
Sbjct: 90  LGGQAALNIAMELEESGFLAETGTKLIGTTSLTIKKAEDRLEFKNTMEKIGEPCAASVVV 149

Query: 114 NRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                  D    I  P VI+P       G  +    + +          +   Q LIE+ 
Sbjct: 150 TTVPAAVDFAETIGYPVVIRPAYTLGGSGGGIAADKEELIDICTNGLRLSRVGQCLIERC 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +       ++  +        +    Y+ ++  A
Sbjct: 210 IAGWKEIEYEVMRDGAGNCITVCNMENLDP-VGVHTGDSIVVAPSQTLSDKEYQMLRTSA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                 I   G     +   P S +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LNIITEINITGGCNVQYALKPDSFEYCVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 81/255 (31%), Gaps = 11/255 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   +PD A     G          +   + I  T +  + +A   +       
Sbjct: 618 EDVENIVDLEQPDGAVVQFGGQTAIKLTEALLKMGVPILGTSAENVDAAEDRELFDEILE 677

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   ++      + + + +  P +++P       G+ +   D  +   +   + 
Sbjct: 678 KCCIPRPAGKTVFTTEEAIVAANQLGYPVLVRPSYVLGGAGMQIAICDDDVREFMEIINR 737

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AK 218
                 +L+++Y+ G E+    + D    +     P    +       S +S  V P   
Sbjct: 738 NVQEHPILVDKYLMGKEVEVDAVCDGEDILI----PGIMEHIERAGIHSGDSISVYPAQS 793

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           I   +   +        +++   G+    F+    + +V+ +E+N +   T     P ++
Sbjct: 794 ISNKVQDVIVDYTRKLAKSLNVIGLINIQFIV--YNEEVYVIEVNPRSSRT----VPYIS 847

Query: 279 AYAGYSFRELLLWMV 293
                    L    V
Sbjct: 848 KVTNIPIVSLASKAV 862


>gi|19351923|emb|CAD19598.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525854|gb|AAT45137.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525858|gb|AAT45139.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D    +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDEVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|1814242|gb|AAB41851.1| D-Alanine:D-Alanine ligase [Streptococcus equinus]
          Length = 197

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 58/141 (41%), Gaps = 1/141 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              ++ P  IKP   GSS+GI     ++ +   +  +  ++    +        IE+   
Sbjct: 57  NEKLTYPVFIKPANMGSSVGISKADDEEGLRSAIDLALKYDSRILIETGVNAREIEVGIL 116

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              D    +    V    FY Y+ KY     T  +PA I  +I +E++  A  A +AIG 
Sbjct: 117 GNADVQTTLPGEVVKDVAFYDYDAKYIDNKITMDIPAHIDSNIMEEMRGYATTAFRAIGG 176

Query: 241 RGISRSDFLFDPLSRKVFWLE 261
            G+SR DF        V+  E
Sbjct: 177 CGLSRCDFFLTE-DGHVYLNE 196


>gi|83772212|dbj|BAE62342.1| unnamed protein product [Aspergillus oryzae]
          Length = 524

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 76/223 (34%), Gaps = 8/223 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E     + +    I     G    + + DK+++KQ+ + C VP
Sbjct: 75  REHNIDSVHPG-YGFLSESAEFASRMHDAGITVIGPGPETLSCTGDKLKAKQLATQCKVP 133

Query: 107 ----VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
               +  S    +        +  P +IK + GG   GI +++++  +   +  +++ + 
Sbjct: 134 VLPAMPRSTSDLKEIRTFARQVGYPIMIKAVDGGGGRGIRLVRQEGELEHAVRAATNESP 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              + +E+          V              +        +                +
Sbjct: 194 SQTVFVEKAAVDGFHHVEVQVVGDGIDVCHLWERDCSLQ---RRFQKVVEFAPSLMQNRE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++V   A    +AI  R +   +FL     R+ ++LEIN +
Sbjct: 251 VVEQVLNAALRMAKAIRYRSLGTVEFLVHNHRREFYFLEINPR 293


>gi|227541852|ref|ZP_03971901.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51866]
 gi|227182295|gb|EEI63267.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51866]
          Length = 1154

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V      D  +   +G   E+  +        + +         L+ DK  
Sbjct: 86  LDIDE-IMRVAKESGADAVYPG-YGFLSENPQLARECAENGLTFIGPTPEVLDLTGDKAA 143

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P+                      P  +K + GG   G+  +   + +  
Sbjct: 144 AVHAAKEAGLPILEDSEATDDIDTLVSYAEGREFPLFVKAVAGGGGRGMRFVPDAEHLRE 203

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S   +        Y++   +    +    L      V         ++       
Sbjct: 204 LAAEASREANSAFGDPSVYLEQAVINPQHIEVQILADATGDVIHLFERDCSVQRRHQKVV 263

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P+     ++  ++   A    + IG +G    +FL D     V ++E+N +
Sbjct: 264 EIAPSPNLDPELRDQICADAVKFCKHIGYQGAGTVEFLVDEHGNHV-FIEMNPR 316


>gi|227486986|ref|ZP_03917302.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51867]
 gi|227093060|gb|EEI28372.1| pyruvate carboxylase [Corynebacterium glucuronolyticum ATCC 51867]
          Length = 1154

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V      D  +   +G   E+  +        + +         L+ DK  
Sbjct: 86  LDIDE-IMRVAKESGADAVYPG-YGFLSENPQLARECAENGLTFIGPTPEVLDLTGDKAA 143

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P+                      P  +K + GG   G+  +   + +  
Sbjct: 144 AVHAAKEAGLPILEDSEATDDIDTLVSYAEGREFPLFVKAVAGGGGRGMRFVPDAEHLRE 203

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S   +        Y++   +    +    L      V         ++       
Sbjct: 204 LAAEASREANSAFGDPSVYLEQAVINPQHIEVQILADATGDVIHLFERDCSVQRRHQKVV 263

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P+     ++  ++   A    + IG +G    +FL D     V ++E+N +
Sbjct: 264 EIAPSPNLDPELRDQICADAVKFCKHIGYQGAGTVEFLVDEHGNHV-FIEMNPR 316


>gi|326430749|gb|EGD76319.1| carbamylphosphate synthetase 1 [Salpingoeca sp. ATCC 50818]
          Length = 1560

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 83/297 (27%), Gaps = 36/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   ++ +                       V  ++A  +PD  F 
Sbjct: 465 SGSQAIKALKEKGIKSVLVNPNIATVQTAEGLADQVYLMPIEPEFVQEIIAKERPDGIFL 524

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     +L    +    + + +   + D+    Q +      +    +
Sbjct: 525 QFGGQTALNCGVELDRNGVLAQYGVRVLGTSVNSIIATEDREIFAQKLLDIGESIATSVA 584

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +++       LG      ++ +        S        +  
Sbjct: 585 ATSTDAAIQAAREIGYPVIVRAAFSLGGLGSGFAHDEEQLRR----LCSRAFSQCPQVLV 640

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229
                                     +      L   + +S  + P++   D  Y  ++ 
Sbjct: 641 EKSLKGWKEIEYEVVRDQYDNCVTVCNMENFDPLGIHTGDSIVIAPSQTLSDQDYHMLRS 700

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            +    + +G  G     F  DP SR+   +E N  P ++  S     +   GY   
Sbjct: 701 ASIRVARTLGIVGECNVQFALDPNSREYCIIEAN--PRLSRSS--ALASKATGYPLA 753


>gi|308193598|gb|ADO16330.1| vancomycin resistance protein A [Enterococcus faecalis]
          Length = 223

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/201 (26%), Positives = 94/201 (46%), Gaps = 9/201 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 25  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 84

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 85  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 142

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224
           V G E+ C V+G+++  V          Y     +  +            +PA +  +  
Sbjct: 143 VSGCEVGCAVLGNSAALVVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 202

Query: 225 KEVQRLAFLAHQAIGCRGISR 245
             +Q  A   ++A+GCRG++R
Sbjct: 203 GRIQETAKKIYKALGCRGLAR 223


>gi|302505307|ref|XP_003014360.1| urea amidolyase, putative [Arthroderma benhamiae CBS 112371]
 gi|291178181|gb|EFE33971.1| urea amidolyase, putative [Arthroderma benhamiae CBS 112371]
          Length = 912

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 159 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 218

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 219 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAKSSFGDDTMLIEK 278

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 279 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 338

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 339 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 370


>gi|296129692|ref|YP_003636942.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena
           DSM 20109]
 gi|296021507|gb|ADG74743.1| carbamoyl-phosphate synthase, large subunit [Cellulomonas flavigena
           DSM 20109]
          Length = 1111

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVVLVNSNPATIMTDPEFADATYVEPITTEVLTSIIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +LE   +    + I A     D+   K VV   G     S  
Sbjct: 89  TLGGQTALNAAIALDEAGVLEKYGVELIGANIAAIQKGEDRQAFKDVVEVAGGESARSAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      + +   +  P V++P      LG  +   +  +   + Q   ++   ++L+E+
Sbjct: 149 IHTVDEALVAAEDLGYPMVVRPSFTMGGLGSGLAYDEDDLRRIVGQGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SILGWKEYELELMRDKHDNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDREYQRLRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPDTGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|3821385|emb|CAA13259.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|48525838|gb|AAT45129.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525844|gb|AAT45132.1| D-alanine D-alanine ligase [Streptococcus mitis]
 gi|48525848|gb|AAT45134.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|229524745|ref|ZP_04414150.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae bv.
           albensis VL426]
 gi|229338326|gb|EEO03343.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae bv.
           albensis VL426]
          Length = 447

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|254476153|ref|ZP_05089539.1| carbamoyl-phosphate synthase, large subunit [Ruegeria sp. R11]
 gi|214030396|gb|EEB71231.1| carbamoyl-phosphate synthase, large subunit [Ruegeria sp. R11]
          Length = 1119

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE  ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLEKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                    D    I  P +I+P       G  V    +         
Sbjct: 149 ITAPNKADGSADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 105/303 (34%), Gaps = 48/303 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDAGYETIMINCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 634 RLYFEPLTFEHVMEILTTEQENGTLHGVIVQFGGQTPLKLANALEAEGIPILGTSPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQALVNQLGLKQPKNGIASTDAQALEIAGEIGFPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 754 MDQLKRYIAEAVVVSGDSPVLLDSYLAGAVELDVDAICDGTEVHVAGIMQHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF---DPLSRKVFWLEI 262
           +S  ++  + P  +  +I  E++       +A+   G+    F     D    ++F +E+
Sbjct: 811 HSGDSACSLPPYSLSKEIIAEIKIQTEALAKALNVVGLMNIQFAIKANDEGKDEIFLIEV 870

Query: 263 NVQ 265
           N +
Sbjct: 871 NPR 873


>gi|168041186|ref|XP_001773073.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162675620|gb|EDQ62113.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 2249

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/207 (13%), Positives = 63/207 (30%), Gaps = 5/207 (2%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G     G       + +     +   + +         Q      +     +      + 
Sbjct: 142 GPMSALGDKIGSSLIAQAAGVPTLPWSGSNVNVPFDVCQGNIPDDLYKKACVSTTEEALI 201

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELT 178
           S   +  P +IK   GG   GI  +  D+ +     Q      G  + I +       L 
Sbjct: 202 SCQEVGYPAMIKASWGGGGKGIRKVHNDEEVKALFKQVQGEVPGSPIFIMKVASQSRHLE 261

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D   +V  +            K        + P     +  K +++ A    + +
Sbjct: 262 VQLLCDKYGNVAALHSRDCSVQRRHQKIIEEGPITIAPP----ETVKRLEQGACRLAKCV 317

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G +  ++L+   + + ++LE+N +
Sbjct: 318 NYIGAATVEYLYSMETGEFYFLELNPR 344


>gi|156145996|gb|ABU53059.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|148711555|gb|ABR02204.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDVPAKISDDVIAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|77463759|ref|YP_353263.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides 2.4.1]
 gi|77388177|gb|ABA79362.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodobacter sphaeroides
           2.4.1]
          Length = 448

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      L+   I +         +  DK+ +K  + + GVP  P     +   
Sbjct: 82  YGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDGGVPDY 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              + +   I  P +IK   GG   G+ V + +Q + +    + S     + + +  + +
Sbjct: 142 ETAIATARDIGFPVIIKATAGGGGRGMKVARNEQELEIAFRTARSEAKAAFGNDEVYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            K        V+  ++  +I +    
Sbjct: 202 YLQKPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVFEEAPGPVITPEMRAEIGRICAD 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   I   G    +FL+     + +++E+N +
Sbjct: 262 AVAR----INYIGAGTIEFLY--EDGQFYFIEMNTR 291


>gi|170743520|ref|YP_001772175.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium sp.
           4-46]
 gi|168197794|gb|ACA19741.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium sp.
           4-46]
          Length = 451

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L    I +         +  DK+ +K+  +  G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLGHHRIAFIGPKAEHIRVMGDKIEAKRTATRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P +IK   GG   G+ V + ++ +   L  +          
Sbjct: 135 EGGVSDPDEARRVAAEIGYPVLIKAASGGGGRGMKVARSEEDLETALATARIEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L                L+          P+     ++ ++
Sbjct: 195 DAVYIEKYLEKPRHIEVQVLGDGRGGAIHLAERDCSLQRRHQKVWEEGPSPALNPEMREQ 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +G  G    +FL+       +++E+N +
Sbjct: 255 IGSICARAMQELGYTGAGTIEFLY--EDGAFYFIEMNTR 291


>gi|6434089|emb|CAB60641.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634599|emb|CAB64490.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLVYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|126462589|ref|YP_001043703.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides ATCC 17029]
 gi|221639630|ref|YP_002525892.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides KD131]
 gi|332558615|ref|ZP_08412937.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides WS8N]
 gi|126104253|gb|ABN76931.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodobacter sphaeroides ATCC 17029]
 gi|221160411|gb|ACM01391.1| Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodobacter sphaeroides KD131]
 gi|332276327|gb|EGJ21642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides WS8N]
          Length = 448

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      L+   I +         +  DK+ +K  + + GVP  P     +   
Sbjct: 82  YGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDGGVPDY 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              + +   I  P +IK   GG   G+ V + +Q + +    + S     + + +  + +
Sbjct: 142 ETAIATARDIGFPVIIKATAGGGGRGMKVARNEQELEIAFRTARSEAKAAFGNDEVYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            K        V+  ++  +I +    
Sbjct: 202 YLQKPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVFEEAPGPVITPEMRAEIGRICAD 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   I   G    +FL+     + +++E+N +
Sbjct: 262 AVAR----INYIGAGTIEFLY--EDGQFYFIEMNTR 291


>gi|261749404|ref|YP_003257089.1| carbamoyl-phosphate synthase large subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497496|gb|ACX83946.1| carbamoyl-phosphate synthase large subunit [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 1076

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       +  V+   KP     
Sbjct: 25  SGTQALKALKEEGIYTILINPNIATVQTSKEVADKVYFLPLTFFFIKKVIEKEKPKGILL 84

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G     + +LE  +I    + I +   S D+   ++ +S   +    S  
Sbjct: 85  SFGGQTALNCGIQLFKEGLLEKYKIQVLGTSIESIIQSEDRNLFRKRLSRMNIKTAKSFV 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +I+       LG    K    +   +  + ++++  Q+++E+
Sbjct: 145 VYSMDHAISYALKIGFPVIIRSAYTLGGLGSGFAKNIHDLKKIV--NKAFSYSSQVVVEE 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G               + IAV   + +     ++  +        +    Y ++++L
Sbjct: 203 YLEGW-KEIEYEIVRDKYDSSIAVCNMENFDPIGIHTGESIVIAPSQTLTNSEYYKLRQL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +     G     F  +P S     +E+N +  ++  S     +   GY   
Sbjct: 262 SLQIARKFEIVGECNVQFALNPKSEDYRIIEVNAR--LSRSS--ALASKATGYPLA 313


>gi|261345823|ref|ZP_05973467.1| phosphoribosylglycinamide formyltransferase 2 [Providencia
           rustigianii DSM 4541]
 gi|282566312|gb|EFB71847.1| phosphoribosylglycinamide formyltransferase 2 [Providencia
           rustigianii DSM 4541]
          Length = 392

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYDNAPAMHVAHRSYTINMLDGEAIRQLVEQEKPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   LV+  L+  ++  + + +  +       R               +      +
Sbjct: 84  E-AIATKTLVELELQGQKVVPSANAVYLTMNREGIRRLAAEELQLPTSEYRFVETQDDFI 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  VI+ D+ +       S    G +    + +    + 
Sbjct: 143 AAATEIGFPCIVKPVMSSSGKGQSVIRSDEQLQAA---WSYSQEGGRAGQGRVIVEKMVN 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                          +       +  +          P  +     K+ Q +A     A+
Sbjct: 200 FDFEITLLTVSAVDGIHFCAPVGHR-QEKGDYRESWQPQVMSESALKKAQDVAAKIVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         + + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVCGDD--IIFNEVSPRPHDTGM 289


>gi|148711621|gb|ABR02237.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKIGDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|319892112|ref|YP_004148987.1| Pyruvate carboxyl transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317161808|gb|ADV05351.1| Pyruvate carboxyl transferase [Staphylococcus pseudintermedius
           HKU10-03]
 gi|323464777|gb|ADX76930.1| pyruvate carboxylase [Staphylococcus pseudintermedius ED99]
          Length = 1149

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  EQIIKVAKEANVDAIHPG-YGFLSENMQFAQRCAEEGIVFIGPHVEHLDMFGDKVKARAT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     +               P +IK   GG   G+ ++++   +     
Sbjct: 126 AIKADLPVIPGTDGPVAGFEEAQTFAEKAGFPLMIKATSGGGGKGMRIVREPSELQEAFT 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIEKFIDQPKHIEVQVMGDEAGNIIHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+    D + +++   A    + I        +FL      + +++E+N +
Sbjct: 246 PSVSLPDNLREQICEAAVDLMRQIQYVNAGTVEFLV--SGNEFYFIEVNPR 294


>gi|302652216|ref|XP_003017964.1| urea amidolyase, putative [Trichophyton verrucosum HKI 0517]
 gi|291181557|gb|EFE37319.1| urea amidolyase, putative [Trichophyton verrucosum HKI 0517]
          Length = 892

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 75/216 (34%), Gaps = 13/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+           + +      A     DK RSK+++++ GVP  P        +
Sbjct: 164 YGFLSENAGFAKKCTDAGLIFIGPPPSAIDAMGDKSRSKEIMTAAGVPCVPGYHGTNQDV 223

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
           +        I  P +IK +KGG   G+ + +        L        SS+     L+ +
Sbjct: 224 NFLAAEAEKIKYPVLIKAVKGGGGKGMRIARSAAEFQDQLRSAKSEAKSSFGDDTMLIEK 283

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            K    +    LP     D++ + + 
Sbjct: 284 YITTPRHIEVQVFADQHGNSVALGERDCSVQRRHQKVLEESPAPHLPEATRKDLWAKARD 343

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+FD  + + F++E+N +
Sbjct: 344 AALA----VGYEGAGTVEFIFDNDTGEFFFMEMNTR 375


>gi|269795106|ref|YP_003314561.1| carbamoyl-phosphate synthase large subunit [Sanguibacter keddieii
           DSM 10542]
 gi|269097291|gb|ACZ21727.1| carbamoyl-phosphate synthase large subunit [Sanguibacter keddieii
           DSM 10542]
          Length = 1107

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 95/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  +         D                +  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGIRVILVNSNPATIMTDPEFADATYVEPITTEVLTSIIAKERPDAVLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            L G    +         +L   ++    + I A     D+++ K+VV  CG     S  
Sbjct: 89  TLGGQTALNAAIALDEAGVLAEYDVELIGANIAAIQKGEDRLQFKEVVEKCGGESARSVI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      + +   +  P V++P      LG  +   ++ +   + Q   ++   ++L+E+
Sbjct: 149 IHAVEEAVAAADDLGYPMVVRPSFTMGGLGSGIAYDEKDLRRIVGQGLHYSPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +        
Sbjct: 209 SILGWKEYELELMRDKADNVVVICSIENVDPVGVHTGDSVTVAPALTLTDREYQNLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     +   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQYAVHPETGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|259418646|ref|ZP_05742563.1| carbamoyl-phosphate synthase, large subunit [Silicibacter sp.
           TrichCH4B]
 gi|259344868|gb|EEW56722.1| carbamoyl-phosphate synthase, large subunit [Silicibacter sp.
           TrichCH4B]
          Length = 1120

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKYNVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     D+                  I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKDNGSADLEAGVQIALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRTASIAVLREIGVETGGSNVQWAVNPDDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 62/162 (38%), Gaps = 10/162 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              I  P VI+P        + +++    +   + ++   +    +L++ Y+ G +EL  
Sbjct: 734 AEEIGFPLVIRPSYVLGGRAMEIVRDMDQLKRYIKEAVVVSGDSPVLLDSYLSGAVELDV 793

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +       +S  ++  + P  +  D+ + ++  +F   +A+ 
Sbjct: 794 DAICDGTDVHVAGIMQHIEEAG---VHSGDSACSLPPYSLDKDVIERIKEQSFALAKALN 850

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             G+    F       +++ +E+N +   T     P +A   
Sbjct: 851 VVGLMNVQFAI--KDNEIYLIEVNPRASRT----VPFVAKAT 886


>gi|193216335|ref|YP_001997534.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
 gi|193089812|gb|ACF15087.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
          Length = 485

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/219 (17%), Positives = 82/219 (37%), Gaps = 9/219 (4%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+ +    ++   + +            DK+R+K+      VPV P + 
Sbjct: 79  NAIHPGWGFLSENAVFAKKVQDAGLIWIGPSAEVIDKMGDKIRAKKTAVEANVPVIPGVN 138

Query: 113 VNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             +             ++ P +IK   GG   G++ ++++  +     Q+ S        
Sbjct: 139 NPKSPDDIRKWMKDEDVAYPIMIKATAGGGGKGMVRVQQECELEGAFQQAKSEAKKSFGD 198

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
            E  V+        +    +  +   V         ++  +       P+  I  +I ++
Sbjct: 199 EEVLVEKFIQKSRHIEVQIVADSHGNVIHLFERECTIQRRNQKVIEEAPSPSITPEIRQD 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + + A    +AIG       +FLFD  ++K ++LE+N +
Sbjct: 259 ICQTAVRLMKAIGYTSAGTVEFLFDADTQKFYFLEVNTR 297


>gi|24651759|ref|NP_733456.1| CG2118, isoform B [Drosophila melanogaster]
 gi|23172805|gb|AAN14292.1| CG2118, isoform B [Drosophila melanogaster]
 gi|25012736|gb|AAN71461.1| RE65842p [Drosophila melanogaster]
 gi|220950566|gb|ACL87826.1| CG2118-PB [synthetic construct]
          Length = 634

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK ++GG   G+ + +K       L  + + +          ++    +  
Sbjct: 109 ADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSSVLLERYVRSPR 168

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + + +E+   A  A +A+G
Sbjct: 169 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVG 228

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D       ++E+N       P +T +            +  +L+ W + 
Sbjct: 229 YVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEWQIR 276

Query: 295 DAS 297
            A+
Sbjct: 277 IAA 279


>gi|24651757|ref|NP_651896.1| CG2118, isoform A [Drosophila melanogaster]
 gi|23172804|gb|AAF57199.2| CG2118, isoform A [Drosophila melanogaster]
 gi|33589591|gb|AAQ22562.1| GM14617p [Drosophila melanogaster]
 gi|220951634|gb|ACL88360.1| CG2118-PA [synthetic construct]
          Length = 698

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 59/183 (32%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK ++GG   G+ + +K       L  + + +          ++    +  
Sbjct: 173 ADKIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSSVLLERYVRSPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + + +E+   A  A +A+G
Sbjct: 233 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D       ++E+N       P +T +            +  +L+ W + 
Sbjct: 293 YVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEWQIR 340

Query: 295 DAS 297
            A+
Sbjct: 341 IAA 343


>gi|192292966|ref|YP_001993571.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas
           palustris TIE-1]
 gi|192286715|gb|ACF03096.1| carbamoyl-phosphate synthase, large subunit [Rhodopseudomonas
           palustris TIE-1]
          Length = 1109

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL+  G++V  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKALKQEGYRVVLVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERYVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLEKFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PNSRQVKSLPDALRALDEIGFPALIRPSFTMGGTGGGIAYTKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKHDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPDDGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 42.9 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  +   E++R        +   G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPHSLSAETIAELERQTRELALGLDVVGLMNVQYAI--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    +L   +
Sbjct: 886 --VPFVAKVIGMPVAKLAARI 904


>gi|156146842|gb|ABU53433.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTFPVFTKPSNMGSSVGISKSENQEELRQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766007|emb|CAB16965.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766109|emb|CAB17016.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821395|emb|CAA13264.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711443|gb|ABR02148.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711447|gb|ABR02150.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711463|gb|ABR02158.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711479|gb|ABR02166.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A +A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAEIAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|56964160|ref|YP_175891.1| pyruvate carboxylase [Bacillus clausii KSM-K16]
 gi|56910403|dbj|BAD64930.1| pyruvate carboxylase [Bacillus clausii KSM-K16]
          Length = 1149

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 31/240 (12%), Positives = 79/240 (32%), Gaps = 10/240 (4%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++A  K     + +H   G   E+       +   + +    +    + 
Sbjct: 61  KPIDAYLDIEDIIATAKAHDV-DAIHPGYGFLSENIEFARRCQEEGLIFVGPELEHLRMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+++++     G+PV P     +               P++IK   GG   G+ ++++
Sbjct: 120 GDKIQAREQALKAGLPVIPGSDGPVASLEEVQAFADEHGYPFIIKASLGGGGRGMRIVRE 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++ +     ++ S         E YV+        +    L      +         ++ 
Sbjct: 180 EKDVKESYERAKSEAKSAFGNDEVYVEKFVERPKHIEVQILADKHGNIVHLYERDCSVQR 239

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  + P+     ++   +   A    + +G       +FL        +++E+N +
Sbjct: 240 RHQKVVEIAPSVSLSDEVRTNICDAAVNLMKNVGYVNAGTVEFLVT-DDGTFYFIEVNPR 298


>gi|39937131|ref|NP_949407.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas
           palustris CGA009]
 gi|39650989|emb|CAE29512.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas
           palustris CGA009]
          Length = 1109

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL+  G++V  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKALKQEGYRVVLVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERYVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLEKFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PNSRQVKSLPDALRALDEIGFPALIRPSFTMGGTGGGIAYTKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKHDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPDDGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 42.9 bits (99), Expect = 0.058,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  +   E++R        +   G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPHSLSAETIAELERQTRELALGLDVVGLMNVQYAI--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    +L   +
Sbjct: 886 --VPFVAKVIGMPVAKLAARI 904


>gi|313192153|emb|CBX19936.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 116

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 12  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 69

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 70  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPGMTK 116


>gi|311029786|ref|ZP_07707876.1| pyruvate carboxylase [Bacillus sp. m3-13]
          Length = 1147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 76/239 (31%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 65  LDIDG-IIEIAKANDVDAIHPG-YGFLSENIHFARKCEEEGIIFIGPTSKHLDMFGDKVK 122

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     +      MD       P +IK   GG   G+ +++    + 
Sbjct: 123 ARTQAQLANIPVIPGTDGPVHSLDEVMDFAATYGYPLMIKAALGGGGRGMRIVRSKSELR 182

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + D  + +   +   +   ++GD   ++  +            + 
Sbjct: 183 ESFDRAKSEAKAAFGNDDVYVEKLIENPKHIEVQILGDQHGEIIHLFERDCSIQ----RR 238

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  D+   +   A    + +        +FL      + +++E+N +
Sbjct: 239 HQKVVEIAPSVSLTDDLRDRICNAAVELMENVDYINAGTVEFLV--AGDEFYFIEVNPR 295


>gi|218526172|gb|ACK86493.1| carbamoyl-phosphate synthase [Corydalus cornutus]
          Length = 722

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   K   I+ +                       V  V+   +PD    
Sbjct: 124 SGSQAIKALREENVKTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPDGVLL 183

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G       I E        + I +   + D+     +    +  V    +
Sbjct: 184 TFGGQTAFNCGVKLQHTGIFEKYGCKILGTPIQSIIETEDRKIFSERINEINERVAPSAA 243

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG         +   +L   +  H  QL+I++
Sbjct: 244 VYSVREALDAAEKLGYPVMARAAFSLGGLGSGFANNKDEL--KILAQQALAHSSQLIIDK 301

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 302 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVIAPSQTLSNREYNMLRTT 360

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 361 AIKVIRHFKVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 416

Query: 291 WM 292
            +
Sbjct: 417 KL 418


>gi|196230927|ref|ZP_03129788.1| acetyl-CoA carboxylase, biotin carboxylase [Chthoniobacter flavus
           Ellin428]
 gi|196225268|gb|EDY19777.1| acetyl-CoA carboxylase, biotin carboxylase [Chthoniobacter flavus
           Ellin428]
          Length = 454

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI----DVDRSVGLVLAHL--------------KPDLAFNVLH- 59
                 A ++ G K   +    DVD S+ + LA                K D   +    
Sbjct: 14  ALRVIRACKELGVKTLAVYSEADVD-SLHVQLADEAICIGSAASSQSYLKIDRIISAAEI 72

Query: 60  ----------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                     G   E+     + E   I +      A     DK  ++      G+PV P
Sbjct: 73  GDVDAIHPGYGFLSENAHFAEVCESCNIKFIGPPPAAIRAMGDKNTARATAKKAGMPVTP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                +   +  +     I  P +IK   GG   G+     D S+      + S      
Sbjct: 133 GSEGIVETEKDALRIARQIGYPVMIKATAGGGGRGMRPAHNDGSLVQGYHAARSEAEKAF 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++ +      +    +  +   V         ++  +       P   +  +I 
Sbjct: 193 GNSGVYIEKLIENPHHIEFQIMADSHGDVVHLGERDCSMQRRNQKIIEETPSPIMTPEIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++        + +G  G    + L D  +   +++E+N +
Sbjct: 253 EKMGADCVRLAKEVGYVGAGTIECLMD-DNGNYYFMEMNTR 292


>gi|183585296|gb|ACC63962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPGMTK 131


>gi|183585294|gb|ACC63961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585298|gb|ACC63963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPGMTK 131


>gi|169612854|ref|XP_001799844.1| hypothetical protein SNOG_09555 [Phaeosphaeria nodorum SN15]
 gi|160702598|gb|EAT82820.2| hypothetical protein SNOG_09555 [Phaeosphaeria nodorum SN15]
          Length = 733

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              S     +       I  P ++K +KGG   G+ ++  +Q     L  + S       
Sbjct: 188 YHGSNQDPDYLKSEAAKIGYPVLLKAVKGGGGKGMRIVNTEQEFFDQLASAKSEARNSFG 247

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
                V+    T   +                     ++          PA    + I +
Sbjct: 248 DEVMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLQEHIRQ 307

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A  A  A+G  G    +F+FD  S + F++E+N +
Sbjct: 308 DIWEKARQAALAVGYEGAGTVEFIFDNDSGEFFFMEMNTR 347


>gi|270307572|ref|YP_003329630.1| hypothetical protein DhcVS_129 [Dehalococcoides sp. VS]
 gi|270153464|gb|ACZ61302.1| hypothetical protein DhcVS_129 [Dehalococcoides sp. VS]
          Length = 498

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 85/281 (30%), Gaps = 37/281 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
                 A  + G K   +  D                             + +  V    
Sbjct: 14  AIRIMRACRELGIKTVAVYSDADKGALFVKYADEAYHIGPAQLSESYLNIKKIVSVAKKA 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      LE   I +         L  +K+ +++ +   GVPV P
Sbjct: 74  GVDGVHPG-YGFLSENPGFALALEKAGIKFVGPSSRVIELMGNKIAARREMKKAGVPVLP 132

Query: 110 SILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   ++        I  P +IKP  GG  +G+ V      +   +  S        
Sbjct: 133 GTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIESSQKVAGNTF 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            L E Y++        +    +  ++  V         ++          P   I  ++ 
Sbjct: 193 GLAEVYIEKYISKPRHIEIQIMGDSQGNVVYLGERECSIQRRYQKLIEEAPSPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++  +A  A + +   G    +F+F   + + ++LE N +
Sbjct: 253 KKMGEVAIKAGKWVNYEGAGTIEFIF--SNGQFYFLEANTR 291


>gi|156146848|gb|ABU53436.1| D-alanylalanine synthetase [Streptococcus viridans]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENKEELHQALELAF--KYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYGVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIALMRKNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|115375436|ref|ZP_01462697.1| carbamoyl-phosphate synthase, large subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|310821115|ref|YP_003953473.1| carbamoyl-phosphate synthase large chain [Stigmatella aurantiaca
           DW4/3-1]
 gi|115367563|gb|EAU66537.1| carbamoyl-phosphate synthase, large subunit [Stigmatella aurantiaca
           DW4/3-1]
 gi|309394187|gb|ADO71646.1| Carbamoyl-phosphate synthase large chain [Stigmatella aurantiaca
           DW4/3-1]
          Length = 1081

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 86/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G +V  ++ +                      S   +LA  +PD    
Sbjct: 29  SGTQAIKALRDEGVEVVLLNSNPATVMTDPEFAHRTYIEPISVESAEKILAAERPDSLLP 88

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSK--QVVSSCGVPVCPS 110
            + G       +    Q ILE   +    + + A   + D+   K         +P    
Sbjct: 89  TMGGQTALNLAKALAEQGILEKYGVRLIGASLEAINKAEDRQLFKAAMQKIGVALPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +I+P       G  +    +            +    +L+E+
Sbjct: 149 ARTIDEALSLVEEIGFPAIIRPSFTLGGTGGGIAYNREEYETICRSGLKASPTSTILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   I     +     +      +          +  +  Q  
Sbjct: 209 SVLGWKEYELEVVRDSADNVIIVCSIENLDPMGVHTGDSITVAPSQTLTDREYQRMRQAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P   ++  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 LAIIREIGVETGGSNIQFGIHPRDGRMVVIEMN--PRVSRSS--ALASKATGYPIAKVAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 86/285 (30%), Gaps = 28/285 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D             +V  V    KP  A     G   
Sbjct: 588 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTIENVLEVSQREKPIGAIVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      L I  T    +  A   ++  +         P       +         
Sbjct: 648 LKLSVPLEKGGLPILGTSPDAIDRAEDRERFAALIEKLGLTQPENGVARSHDEAFRIAER 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +  +    S+   + ++ S +    +LI++++        +  
Sbjct: 708 IGYPVMVRPSYVLGGRAMESVYDASSLERYMREAVSASPEHPVLIDRFLK-DATEVDLDL 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A      +     +       +S   +  + P  +  D+ + ++  A    + +   G+
Sbjct: 767 VADRTGAVLVGGVLEHIQEAGVHSGDAAATLPPHSLSPDLVERMKDQAISLARELKVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F      + ++ LE+N +   T     P ++   G    +L
Sbjct: 827 MNVQFAI--QGKTIYILEVNPRASRT----VPFISKATGVPLAKL 865


>gi|110680653|ref|YP_683660.1| carbamoyl phosphate synthase large subunit [Roseobacter
           denitrificans OCh 114]
 gi|109456769|gb|ABG32974.1| carbamoyl-phosphate synthase, large subunit [Roseobacter
           denitrificans OCh 114]
          Length = 1119

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 94/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPELADATYIEPITPEMVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKAAI 148

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                    D+   +  P +I+P       G  V              
Sbjct: 149 VTAPKDANGKKDLAEGVRLALDTLEEVGLPAIIRPAFTMGGTGGGVAYNRDDYEAICRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVGQILVDESLLGWKEFEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P+  ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPVDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 56/316 (17%), Positives = 110/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   I         D D S 
Sbjct: 586 VVILGGGPN-------RIGQGIEFDYCCCHACYALTEAGYETIMINCNPETVSTDYDTSD 638

Query: 43  GLVLAHLKPDLAFNV---------LHG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +         LHG            +   LE   IP   +   A  
Sbjct: 639 RLYFEPLTFEHVMEIMRVEQENGTLHGVIVQFGGQTPLKLANALEEAGIPILGTTPDAID 698

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V S G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 699 LAEDRERFQQLVQSLGLKQPKNGIAHSDAEALEIAQDIGFPLVIRPSYVLGGRAMEIVRD 758

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   + Q+   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 759 QASLERYISQAVVVSGDSPVLLDSYLTGAVELDVDALSDGTDVHVAGVMQHIEEAG---V 815

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I +EV        +A+   G+    F       +V+ +E+N +
Sbjct: 816 HSGDSACSLPPYSLKPEIIEEVTEQTHALAKALNVVGLMNIQFAV--KDDEVYLIEVNPR 873

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 874 ASRT----VPFVAKAT 885


>gi|2766001|emb|CAB16962.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766015|emb|CAB16969.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766017|emb|CAB16970.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766083|emb|CAB17003.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766113|emb|CAB17018.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766115|emb|CAB17019.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821362|emb|CAA13248.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821381|emb|CAA13257.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821393|emb|CAA13263.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821407|emb|CAA13270.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821409|emb|CAA13271.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821417|emb|CAA13275.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711411|gb|ABR02132.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711413|gb|ABR02133.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711415|gb|ABR02134.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711417|gb|ABR02135.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711435|gb|ABR02144.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711437|gb|ABR02145.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711439|gb|ABR02146.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711451|gb|ABR02152.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711455|gb|ABR02154.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711457|gb|ABR02155.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711459|gb|ABR02156.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711461|gb|ABR02157.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711471|gb|ABR02162.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711481|gb|ABR02167.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711483|gb|ABR02168.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711485|gb|ABR02169.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711487|gb|ABR02170.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711489|gb|ABR02171.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711491|gb|ABR02172.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711493|gb|ABR02173.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711501|gb|ABR02177.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711531|gb|ABR02192.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711551|gb|ABR02202.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711615|gb|ABR02234.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711689|gb|ABR02271.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711717|gb|ABR02285.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711835|gb|ABR02344.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711837|gb|ABR02345.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|331687687|gb|AED88246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3947750|emb|CAA13580.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|114048592|ref|YP_739142.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp. MR-7]
 gi|123131139|sp|Q0HS20|PURT_SHESR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|113890034|gb|ABI44085.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sp. MR-7]
          Length = 391

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 79/269 (29%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  ++   KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYPNAPAMQIAHRSHVINMLDAKALRAIIELEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +                  
Sbjct: 82  EAIATQTLVEMEAEGLNVVPTARATQLTMDREGIRRLAAETLGLPT-SPYFFCDTETEFN 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P V+KP+   S  G  VI+           +      G   +I +     + 
Sbjct: 141 QAIGKIGVPCVVKPVMSSSGKGQSVIRDVSQSAKAWQYAQEGGRAGGGRVIVEGFIPFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++  ++++      P                    P  +  D+  + Q +A    +A
Sbjct: 201 EITLLTISAVNGIHFCAPIGHRQE-----DGDYRESWQPQAMSADVLAKSQAIASKVVEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +         V++ E++ +P
Sbjct: 256 LGGYGLFGVELFV--KGNDVYFSEVSPRP 282


>gi|298387354|ref|ZP_06996907.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           1_1_14]
 gi|298260023|gb|EFI02894.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           1_1_14]
          Length = 1075

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVRTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|312115133|ref|YP_004012729.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
 gi|311220262|gb|ADP71630.1| hypothetical protein Rvan_2406 [Rhodomicrobium vannielii ATCC
           17100]
          Length = 341

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 57/281 (20%), Positives = 108/281 (38%), Gaps = 8/281 (2%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNV--LHGNFGEDGLVQAILELLEI 77
                 L D G++V        + L+ A  + D+ F++         +  + ++ E L I
Sbjct: 49  ARVFRTLRDLGYRVRT--ASEPLALLAAKGEADIVFSLYNRMPINNPEVFIPSLCEYLRI 106

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-ILVNRFTMDSQHLISPPYVIKPLKGG 136
           PY  +     AL+ DK  +K    + G+PV    +  +   + +      PY +K   G 
Sbjct: 107 PYVGARPNIRALAEDKWLAKLAAKAIGIPVSEGAVYADEAALATPPGFPGPYFVKQRFGA 166

Query: 137 SSLGIIVIK-KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           +S GI     +D       + +     G  +L+E Y  GI++T   +G A+  +    V 
Sbjct: 167 ASEGISAESIQDDWAGAARVAAKLMARGMAVLVEGYAPGIDITVPSLGSANGPLVLGVVR 226

Query: 196 KSDFYSYELKYSSLNSTHV--LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                +  +    L  +            +  +++  A    +A G     R D+ FDP 
Sbjct: 227 PRSDKAGGIITEDLKRSDPLGYEIFEAGRVEDDLRADAATLWRATGPMDYFRMDYRFDPE 286

Query: 254 SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
           + +  +LE N+   +         AA  G S  ++L  ++E
Sbjct: 287 TGRRVFLEFNICCHIGRSGSICLAAAQHGLSQADVLGHVIE 327


>gi|238897318|ref|YP_002922995.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
 gi|229465073|gb|ACQ66847.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Hamiltonella defensa 5AT (Acyrthosiphon pisum)]
          Length = 447

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +   VDR +  VL   +         P    N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTVDRDLKHVLLSDESVCIGEAPAPKSYLNIPALISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GADAIHPGYGFLAENADFAEQIECSGFVFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   N         I  P +IK   GG   G+ V+  D+ +   +  + +     +
Sbjct: 134 SDGPLGEDNIQNSRFAERIGYPVIIKASGGGGGRGMRVVHTDKDLAQAISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           K         +   + 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADKHGNAIYLAERDCSMQRRHQKVLEEAPAPGITHGMR 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             I +        A Q IG  G    +FL+   + + +++E+N +
Sbjct: 254 RQIGE----RCVQACQDIGYHGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|148711669|gb|ABR02261.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 1/141 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +  ++    +        IE+   
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIGLL 66

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              D    +    V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG 
Sbjct: 67  GNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVVVMRQNAETAFRAIGG 126

Query: 241 RGISRSDFLFDPLSRKVFWLE 261
            G+SR DF +     ++F  E
Sbjct: 127 LGLSRCDFFYTDK-GEIFLNE 146


>gi|68171179|ref|ZP_00544586.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N-terminal:Biotin carboxylase, C-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
 gi|67999410|gb|EAM86052.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N-terminal:Biotin carboxylase, C-terminal [Ehrlichia
           chaffeensis str. Sapulpa]
          Length = 655

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 84/247 (34%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L   K  ++A N     +H   G   E+      LE   I +    
Sbjct: 47  EAVNIGPAPVNQSYLNMEKICEVACNTGVDAVHPGYGFLSENADFPEKLEQYNIKFIGPS 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK++  S  V + P  +    ++     I+     P +IK   GG   
Sbjct: 107 STSIRMMADKITSKKIAESAKVNIIPGYMGIVDSVHEAKEIAKSIGFPVMIKATAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++K  + I      +++    +      +++        +    +      +     
Sbjct: 167 GMRIVKSSEEIEQAFTSATNEAAKNFRDGRIFIEKYVELPRHIEIQIIADKHGNIVCLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+     +  +++ +      + +G       +F+ D   ++ +
Sbjct: 227 RECSIQRHNQKVIEETPSPFLDEETRQKMYQQCMNLAKKVGYYSAGTIEFIVD-QDKQFY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|294778066|ref|ZP_06743500.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
 gi|294448124|gb|EFG16690.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           vulgatus PC510]
          Length = 503

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 148 CNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEDPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KNRNFYFLEMNTR 292


>gi|322489977|emb|CBZ25237.1| putative carbamoyl-phosphate synthase [Leishmania mexicana
            MHOM/GT/2001/U1103]
          Length = 1842

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 94/314 (29%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++ ++      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMVLSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDELGVPQPEWISATSVEQVHEFCDRVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEDATEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL      ++  +E NV+   +  S  P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GQLRVIEANVR---SSRS-VP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 95/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  +++    +   +  +       Q+L+E
Sbjct: 513 AVTSVEEAVVASKDIGFPMMVRAAYCLGGQGSGIVENMAELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGVHTGESIVVAPSQTLSNDEFHMLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|150004028|ref|YP_001298772.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|254882916|ref|ZP_05255626.1| pyruvate carboxylase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|319639722|ref|ZP_07994454.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_40A]
 gi|149932452|gb|ABR39150.1| pyruvate carboxylase subunit A [Bacteroides vulgatus ATCC 8482]
 gi|254835709|gb|EET16018.1| pyruvate carboxylase subunit A [Bacteroides sp. 4_3_47FAA]
 gi|317388638|gb|EFV69485.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_40A]
          Length = 503

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 148 CNEIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KNRNFYFLEMNTR 292


>gi|195145088|ref|XP_002013528.1| GL24188 [Drosophila persimilis]
 gi|194102471|gb|EDW24514.1| GL24188 [Drosophila persimilis]
          Length = 702

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 176 AKIIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARNESQKSFGDSSVLLERYVRSPR 235

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 236 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 295

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 296 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 345

Query: 297 S 297
           +
Sbjct: 346 A 346


>gi|156146000|gb|ABU53061.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|303237225|ref|ZP_07323795.1| carbamoyl-phosphate synthase, large subunit [Prevotella disiens
           FB035-09AN]
 gi|302482612|gb|EFL45637.1| carbamoyl-phosphate synthase, large subunit [Prevotella disiens
           FB035-09AN]
          Length = 1074

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     ILE   +    + + A   + D+    Q +    V    S  
Sbjct: 88  AFGGQTALNCGVELDRLGILEKYNVKVLGTPVKAIMNTEDRELFVQQLDEIDVKTIKSEA 147

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CENIEEAREAAKRLGYPVIIRAAYALGGLGSGFADNEEELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y ++++L
Sbjct: 206 SLKGW-KEIEYEVVRDQYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRKL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIKIVRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|302775620|ref|XP_002971227.1| hypothetical protein SELMODRAFT_171851 [Selaginella moellendorffii]
 gi|300161209|gb|EFJ27825.1| hypothetical protein SELMODRAFT_171851 [Selaginella moellendorffii]
          Length = 736

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 87/281 (30%), Gaps = 37/281 (13%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
                   G K   +  D     +      +  F                          
Sbjct: 52  IIKTARSLGLKTVAVYSDADRNSLHVRRADEAVFIGPASAQLSYLSTTSILDAARRTGAD 111

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+Y+     +   V      D     V   +      +             +  D  
Sbjct: 232 VLIEKYIAQPRHIEVQVGDFIFGDRFGNVVHLFERDCSVQRRHQKIIEEAPAPLMSDDFR 291

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + A  A +A+        +F+ D  + + F++E+N +
Sbjct: 292 NSIGQAAVNAAKAVNYENAGTVEFIVDTATGEFFFMEMNTR 332


>gi|316935636|ref|YP_004110618.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas
           palustris DX-1]
 gi|315603350|gb|ADU45885.1| carbamoyl-phosphate synthase, large subunit [Rhodopseudomonas
           palustris DX-1]
          Length = 1109

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL+  G++V  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKALKQEGYRVVLVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERYVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLEKFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PNSRQVKSLPDALRALDEIGFPALIRPSFTMGGTGGGIAYTKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKHDNCIIICSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 41.8 bits (96), Expect = 0.11,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  +   E++R        +   G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPHSLDANTIAELERQTRELALGLDVVGLMNVQYAI--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    +L   +
Sbjct: 886 --VPFVAKVIGMPVAKLAARI 904


>gi|258623768|ref|ZP_05718726.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM603]
 gi|258583965|gb|EEW08756.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio mimicus VM603]
          Length = 447

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EELRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|254488712|ref|ZP_05101917.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           GAI101]
 gi|214045581|gb|EEB86219.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           GAI101]
          Length = 1110

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFGVEMIGAKREAIEMAEDRQLFREAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V      +                  +  P +I+P       G  V              
Sbjct: 149 VTAPKNSAGKKDLAAGVAMALEALEYVGLPAIIRPAFTMGGTGGGVAYNRDDYEFFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVGQILIDESLLGWKEFEMEVVRDTADNAIIVCSIENIDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMVNCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L+   IP   +      
Sbjct: 630 RLYFEPLTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKIAQALQDAGIPILGTTPDMID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R   ++   G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFADLIQKLGLKQPHNGIAHSDAEALEIAADIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 750 QASLERYIREAVVVSGKSPVLLDNYLSGAVELDVDALCDGKNVHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I  EV++       A+   G+    F        ++ +E+N +
Sbjct: 807 HSGDSACSLPPYSLSREIIAEVEKQTKALALALNVVGLMNIQFAI--KDGDIYLIEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|183585300|gb|ACC63964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585302|gb|ACC63965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  ++  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPGMTK 131


>gi|134046360|ref|YP_001097845.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C5]
 gi|132663985|gb|ABO35631.1| pyruvate carboxylase subunit A [Methanococcus maripaludis C5]
          Length = 497

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 76/231 (32%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +      A  +   K+ +K+ 
Sbjct: 64  ERILKVAEKTGVDAVHPG-YGFLSENVKFAEECNKRGIEFIGPPTNAINVMGSKINAKKA 122

Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P       +    ++    I  P +IK   GG  +G+ V+   + +   + 
Sbjct: 123 MKIAGVPVLPGREEPIESEEGAIEVADEIGYPVIIKASAGGGGIGMNVVYNKEELIDTIQ 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    +      V         ++          
Sbjct: 183 STKSIAQSAFGDSTVFIEKYLEKPRHIEIQVVADKFGNVIHLGDRECSIQRRHQKLIEES 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P   +  D+ +++   A  A +AI    +   +FL+   + + ++LE+N +
Sbjct: 243 PSPIMTEDLREKMGTAAVKAAKAINYHSVGTVEFLY--SNGEFYFLEMNTR 291


>gi|48525840|gb|AAT45130.1| D-alanine D-alanine ligase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766009|emb|CAB16966.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766013|emb|CAB16968.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766119|emb|CAB17021.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766127|emb|CAB17025.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821368|emb|CAA13251.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821375|emb|CAA13254.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821387|emb|CAA13260.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821415|emb|CAA13274.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711425|gb|ABR02139.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711427|gb|ABR02140.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711467|gb|ABR02160.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711469|gb|ABR02161.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711495|gb|ABR02174.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711649|gb|ABR02251.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711659|gb|ABR02256.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711661|gb|ABR02257.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711663|gb|ABR02258.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711665|gb|ABR02259.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711671|gb|ABR02262.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711677|gb|ABR02265.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|29345967|ref|NP_809470.1| carbamyl phosphate synthetase [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|29337861|gb|AAO75664.1| carbamyl phosphate synthetase [Bacteroides thetaiotaomicron
           VPI-5482]
          Length = 1075

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   KP+    
Sbjct: 27  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKEKPEGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    Q ++   V    S  
Sbjct: 87  AFGGQTALNCGVALYKEGILEKYNVKVLGTPVQAIMDTEDRELFVQKLNEINVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAEDARRAAKELGYPVIVRAAYALGGLGSGFCDNEEQL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|3947752|emb|CAA13581.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|156146892|gb|ABU53458.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++L+EQ V   E+  G
Sbjct: 7   EKELTYPVFTKPSNMGSSVGISKAENQAELRQSLELAF--KYDSRVLVEQGVVAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY YE KY     T  +PA+IP ++   +++ A LA +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMAIPAEIPAEVAATMRQNAELAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G +G+SR DF +      ++  E
Sbjct: 125 GGKGLSRCDFFYTE-DGGIYLNE 146


>gi|156040880|ref|XP_001587426.1| hypothetical protein SS1G_11418 [Sclerotinia sclerotiorum 1980]
 gi|154695802|gb|EDN95540.1| hypothetical protein SS1G_11418 [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 645

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/217 (17%), Positives = 70/217 (32%), Gaps = 8/217 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+           + +      A     +K RSK ++   GVP  P    
Sbjct: 34  ALHPGYGFLSENSAFAKRCVEEGLVFIGPPWKAIEAMGNKSRSKDIMIKAGVPCIPGYHG 93

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +        I  P ++K +KGG   G+ + + +      L  + S          
Sbjct: 94  ENQEPEHLLNEARKIGFPVMVKAVKGGGGKGMRIAQTEGEFLEKLESAKSEGRNSFGDDV 153

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
             V+    T   +                     L+          PA    + I +++ 
Sbjct: 154 MLVEKYIATPRHIEVQVFADKHGQAVALGERDCSLQRRHQKILEEAPAPNLAEDIRQDLW 213

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A  A+G  G    +F+FD  + + F++E+N +
Sbjct: 214 EKARAAALAVGYEGAGTVEFIFDNDTNEFFFMEMNTR 250


>gi|86450121|gb|ABC96249.1| carbamoylphosphate synthetase [Euhybos sp. JKM-2006]
          Length = 1276

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPITPEYVEQVIKSERPDGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELEKNGVFNKYNVRIMGTPIRSIIETEDRKMFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   ++ P + +       LG      +  +   LL   +  H +QL+I++
Sbjct: 488 VYSVKEALEAAKKLAYPVMARAAFSLGGLGSGFASNEAEL--KLLAEHALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIKHFGVIGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|254469795|ref|ZP_05083200.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
 gi|211961630|gb|EEA96825.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudovibrio sp. JE062]
          Length = 455

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 42/283 (14%), Positives = 85/283 (30%), Gaps = 41/283 (14%)

Query: 19  GKACASALEDAGFKVSQI--------------------------DVDRSVGLVLAHLKP- 51
                 A ++ G +   +                          D   ++  +LA  +  
Sbjct: 14  ALRILRACKELGIRTVAVHSTADEDAMHVRLADESVCIGPPVARDSYLNIPQILAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     ILE   I +         +  DK+++K      G+PV P
Sbjct: 74  GADAVHPG-YGFLSENARFAEILEAHGITFIGPTSEHIRVMGDKIQAKTTAKELGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---H 162
                I            I  P ++K   GG   G+ V +    +   +  + S +    
Sbjct: 133 GSDGGITPEDDVHAIAKEIGYPVLVKAAAGGGGRGMKVAQTADDLDTAISTARSESKAAF 192

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           GD  L  +   G      V           A+   +      +             +  +
Sbjct: 193 GDDALYMEKYLGKPRHIEVQVLGDGQG--NAIHLGERDCSLQRRHQKVFEECPSPALNEE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              E+  +   A + +  RG    +FL+   + + +++E+N +
Sbjct: 251 QRMEIGEICAEAMRKLKYRGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|156146058|gb|ABU53090.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/141 (25%), Positives = 60/141 (42%), Gaps = 1/141 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +  ++    +        IE+   
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAFQYDSRVLVEQGVNAREIEIGLL 66

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              D    +    V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AIG 
Sbjct: 67  GNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVIAVMRQNAEAAFRAIGG 126

Query: 241 RGISRSDFLFDPLSRKVFWLE 261
            G+SR DF +     ++F  E
Sbjct: 127 LGLSRCDFFYTDK-GEIFLNE 146


>gi|186472806|ref|YP_001860148.1| urea carboxylase [Burkholderia phymatum STM815]
 gi|184195138|gb|ACC73102.1| urea carboxylase [Burkholderia phymatum STM815]
          Length = 1203

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 64/182 (35%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ V + D+ +             +      +++       
Sbjct: 147 AKRVGYPVMLKSTAGGGGIGMRVCRSDEELAGQFDIVKRLGQNNFSDAGVFLEKYIEKAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        + A          ++  +       PA    D +   +   A    QA+ 
Sbjct: 207 HLEVQVFGDGKGAAIALGVRDCSVQRRNQKVLEETPAPNLPDGVEAALCDAAIRLAQAVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F++D  + + ++LE+N +     G+T      ++    G    +L+ WM+E 
Sbjct: 267 YRSAGTVEFVYDSDAARFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVRWMIEL 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|269964397|ref|ZP_06178639.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           40B]
 gi|269830894|gb|EEZ85111.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           40B]
          Length = 682

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 80/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +      + I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSEIGIVFIGPSTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  ++   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLIEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GEFYFMEMNTR 292


>gi|262341085|ref|YP_003283940.1| carbamoyl phosphate synthase large subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
 gi|262272422|gb|ACY40330.1| carbamoyl phosphate synthase large subunit [Blattabacterium sp.
           (Blattella germanica) str. Bge]
          Length = 1077

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       +  V+   KP     
Sbjct: 25  SGTQALKALKEEGIYTILINPNIATVQTSKEIADKVYFLPLTLFFIQSVIDKEKPKGILL 84

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G     + I+E  +I    + I +   S D+   +  ++   +    S  
Sbjct: 85  SFGGQTALNCGIQLFQEGIIEKYKIQVLGTPIESIIHSEDRKLFRNRLTHINIKTAKSFV 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +I+       LG    K    +   + ++   ++  Q+++E+
Sbjct: 145 VHSMDDAISYSLKIGFPIIIRSAYTLGGLGSGFAKNINDLKKIVSKAF--SYSSQIIVEE 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G                 I+V   + +     ++  +        +    Y  +++L
Sbjct: 203 YLEGW-KEIEYEIVRDKYDNCISVCNMENFDPIGIHTGESIVVAPSQTLTNSEYYSLRKL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +     G     F  DP S     +E+N +  ++  S     +   GY   
Sbjct: 262 AISIARNFNIVGECNVQFALDPNSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 313


>gi|218526222|gb|ACK86518.1| carbamoyl-phosphate synthase [Nigronia serricornis]
          Length = 719

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 87/302 (28%), Gaps = 35/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   K   I+ +                       V  V+   +PD    
Sbjct: 130 SGSQAIKALREENVKTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPDGVLL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E        + I +   + D+    + ++     V    +
Sbjct: 190 TFGGQTALNCGVELQRCGIFEKYGCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + + +   Q+ + +    +   +
Sbjct: 250 VYSVKEALEAAEKLGYPVMARAAFSLGGLGSGFANNIEELKILAQQALAHSSQLIIDKSK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            ++ +E         +               +  +   +  +  L        Y  ++  
Sbjct: 310 RLEEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTL----SNREYNMLRTT 365

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 366 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 421

Query: 291 WM 292
            +
Sbjct: 422 KL 423


>gi|229044241|ref|ZP_04191915.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|229109950|ref|ZP_04239531.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|229145128|ref|ZP_04273520.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|296503075|ref|YP_003664775.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
 gi|228638326|gb|EEK94764.1| Biotin carboxylase [Bacillus cereus BDRD-ST24]
 gi|228673517|gb|EEL28780.1| Biotin carboxylase [Bacillus cereus Rock1-15]
 gi|228725112|gb|EEL76395.1| Biotin carboxylase [Bacillus cereus AH676]
 gi|296324127|gb|ADH07055.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           thuringiensis BMB171]
          Length = 445

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDNQKN-FYFLEMNTR 292


>gi|193215205|ref|YP_001996404.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088682|gb|ACF13957.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
          Length = 499

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   KP+    
Sbjct: 37  SGTQACRALKNEGYRVILVNSNPATIMTDLEVAHRTYVEPITPEYVEKIIIREKPNALLP 96

Query: 57  VLHGNFGEDG--LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----S 110
            + G    +    +     L        G    A+   + R     +   + +       
Sbjct: 97  TMGGQTALNVAVNLAESGVLERNGVELIGAKLRAIRKAENRELFSEAMKKIGLEMARGVF 156

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D+   I  P VI+P       G    + +      + +    +   ++L+E+
Sbjct: 157 VRSEAEARDALSEIGLPMVIRPSFTLGGTGGGFAENEDDYFDAVRRGLHESPIREVLVEE 216

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +                   
Sbjct: 217 SLIGWKEYELEVIRDLKDNVIIVCSIENLDPMGIHTGDSITVAPAQTLTDRQYQYMRDAA 276

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 277 IKVIREIGVETGGSNIQFAVHPKTGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAA 332

Query: 291 WM 292
            +
Sbjct: 333 KL 334


>gi|114769517|ref|ZP_01447143.1| carbamoyl-phosphate synthase large subunit [alpha proteobacterium
           HTCC2255]
 gi|114550434|gb|EAU53315.1| carbamoyl-phosphate synthase large subunit [alpha proteobacterium
           HTCC2255]
          Length = 1082

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 37/308 (12%), Positives = 90/308 (29%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL++ G++V  +         D D +    +  +  ++               
Sbjct: 29  SGAQACKALKEEGYRVVLVNSNPATIMTDPDMADATYIEPITANIVAKIIEKEKLLHPND 88

Query: 55  ----FNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                  + G  G +          L+   I    +   A  ++ D+   ++ +   G+ 
Sbjct: 89  KMVLLPTMGGQTGLNTALALDEDGTLQKFGIELIGADRKAIEMAEDRKLFREAMDRLGIE 148

Query: 107 VCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
              +      +  MDS   I  P +I+P       G  +    +            +   
Sbjct: 149 NPRATIAHTIQEAMDSIDEIGLPAIIRPAFTMGGTGGGIAYNREEFVHFCTTGLDASPVS 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           Q+LI++ + G +     +     D   I     +     +      +          +  
Sbjct: 209 QILIDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALTLTDKEYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G S   +  +P   ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 MMRTHSINVLREIGVETGGSNVQWSVNPEDGRMVVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332



 Score = 39.9 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 100/317 (31%), Gaps = 51/317 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAGF+   I         D D S 
Sbjct: 570 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGFETIMINCNPETVSTDYDTSD 622

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 623 RLYFEPLTMENVMEILRVEQENGTLHGVIVQFGGQTPLKLANDLEAEGIPILGTSPDAID 682

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R ++++    +    +     +         +  P VI+P        + +I+ 
Sbjct: 683 LAEDRERFQELLQKLNLKQPYNGIAHTDEEAFVIASDVGYPLVIRPSYVLGGRAMEIIRS 742

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 743 DDQLKRYIKEAVVVSGDSPVLLDSYLVGAIEVDVDALSDGKNVHVAGIMQHIEEAG---V 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P     ++          +   G+    F        +F LE+N +
Sbjct: 800 HSGDSACSLPPFSLPQHQIDDMMEQTRALALGLNVIGLMNIQFAIKGED--IFILEVNPR 857

Query: 266 PGMTPVSIFPEMAAYAG 282
              T     P +A    
Sbjct: 858 ASRT----VPFVAKAIN 870


>gi|6434091|emb|CAB60642.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634601|emb|CAB64491.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKAENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|30020612|ref|NP_832243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           ATCC 14579]
 gi|229130894|ref|ZP_04259825.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
 gi|29896164|gb|AAP09444.1| Propionyl-CoA carboxylase biotin-containing subunit [Bacillus
           cereus ATCC 14579]
 gi|228652576|gb|EEL08483.1| Biotin carboxylase [Bacillus cereus BDRD-Cer4]
          Length = 445

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +++ +Q++      + +         E Y++       
Sbjct: 148 AKQIGYPLMLKASAGGGGIGMQLMETEQTLTKAFESNKTRAQNFFGNGEMYLERYIADAH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++  +       P+    +   K +  +A  A +A+G
Sbjct: 208 HIEIQLLADTHGNTVYLWERECSVQRRNQKVIEEAPSPFLDEGTRKAMGEVAVQAAKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YTNAGTVEFLVDNQKN-FYFLEMNTR 292


>gi|260903047|ref|ZP_05911442.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus AQ4037]
 gi|308108381|gb|EFO45921.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus AQ4037]
          Length = 686

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSENSIVFIGPSTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVEHLLTEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  V+   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ +++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRQQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 292


>gi|259015961|gb|ACV89263.1| putative CAD trifunctional protein [Ctenocephalides felis]
          Length = 407

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 81  SGSQAIKALKEEKIQTVLINPNIATVQTSPGLADKIYFLPLTPEYVEQVIKAERPSGILL 140

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +               ++I  T    +           K       V    +
Sbjct: 141 TFGGQTALNCGVKLEQDGVFKTYGVKILGTPIQSIIDTEDRKIFAEKINEIGEQVAPSAA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG         +   +L  +++ H +QL+I++
Sbjct: 201 VYCIQEAIEAADKIGYPVMARAAFSLGGLGSGFANNKDEL--KVLAQNAFAHSNQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDAFNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 AIKVIRHLGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|183585290|gb|ACC63959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--RDNVPYVLEVNTLPGMTK 131


>gi|158335744|ref|YP_001516916.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
 gi|158305985|gb|ABW27602.1| D-alanine--D-alanine ligase A [Acaryochloris marina MBIC11017]
          Length = 330

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 54/291 (18%), Positives = 103/291 (35%), Gaps = 14/291 (4%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLK-PDLAFNVLHG--NFGEDGLVQAILELLEI 77
           A   AL D G  V  I    S+         PDL +N+  G  +     L  A+LE L I
Sbjct: 35  AVTHALTDLGHTVDAIGSLESLLHRWQQQDLPDLVWNLSVGALSRNRTALAPALLEHLGI 94

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           PYT       +L+++K   K V+  CG+   P          ++    P  ++KP   G 
Sbjct: 95  PYTGGDAATKSLTLNKDWLKPVLEWCGIATPPWRRFGLEESITELPPWPVSLLKPTCEGY 154

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLL--IEQYVDGIELTCGVMGDASLDVTEIAVP 195
           SLG+   +    + +   Q        Q     E  + G E+T GV+G+    +      
Sbjct: 155 SLGLQRFETQDGLAVLQKQVQQLQSQFQTAVLCEPLIAGREITVGVVGNLEPSLLGAVET 214

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIY------KEVQRLAFLAHQAIGCRGISRSDFL 249
            +       +               +++       + ++  A      +     +  DF 
Sbjct: 215 LTTSGQALQEQVLDLQAKRQGGFQKVNVDLADSDLQPLRSAALKLMNLLQPLDYATFDFR 274

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
                 + + +++N    + P+    ++A     ++  L+  ++   +C R
Sbjct: 275 LGR--GQAYLVDVNADATLHPLRSLAQIAQAQKLTYPHLIKLILMT-TCHR 322


>gi|116249741|ref|YP_765579.1| putative urea amidolyase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115254389|emb|CAK04022.1| putative urea amidolyase [Rhizobium leguminosarum bv. viciae 3841]
          Length = 1179

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ +      +                    Y++       
Sbjct: 147 AETVGYPVMLKSTAGGGGIGMQLCADAAGLTASFESVQRTARASFGDARVYIERFVAEAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA     +    + + A    +++ 
Sbjct: 207 HVEVQIFGDGKGGVIALGERDCSLQRRNQKVVEETPAPGLSAETRARLHKAAVDLGRSVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP   + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPQREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|147828391|emb|CAN70986.1| hypothetical protein VITISV_039270 [Vitis vinifera]
          Length = 222

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 15/54 (27%), Positives = 24/54 (44%)

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            ++   L    +   G SR D   +  S +V  +E+N  PGMTP ++    A  
Sbjct: 146 CKQRIELIANTLQLEGFSRIDAFVNVDSGEVLIIEVNTVPGMTPSTVLIHQALA 199


>gi|310815214|ref|YP_003963178.1| carbamoyl-phosphate synthase large subunit [Ketogulonicigenium
           vulgare Y25]
 gi|308753949|gb|ADO41878.1| carbamoyl-phosphate synthase large subunit [Ketogulonicigenium
           vulgare Y25]
          Length = 1110

 Score = 53.3 bits (126), Expect = 4e-05,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 84/315 (26%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVVLVNSNPATIMTDPEMADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV-------------------QAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +  +                   +  +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTALALADMGVLEKFGVELIGANRNAIEMAEDRALFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                            R  +D+   I  P +I+P       G  V    +         
Sbjct: 149 VTAPKGADGRKDLKAGVRIALDALEEIGLPAIIRPAFTLGGTGGGVAYNREEYEHYCHTG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVGQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPEDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 56/162 (34%), Gaps = 10/162 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              I  P VI+P        + +++    +   +  +   +    +L++ Y+ G  E+  
Sbjct: 724 AGRIGFPLVIRPSYVLGGRAMEIVRDMDQLNRYIRVAVQVSGDSPVLLDSYLAGATEVDV 783

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +       +S  ++  + P  +  +I  E++        A+ 
Sbjct: 784 DALCDGTRVHVAGIMQHIEEAG---VHSGDSACCLPPHTLSAEIITEIRAQTEKLAMALN 840

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             G+    F        V+ LE+N +   T     P +A   
Sbjct: 841 VVGLMNVQFAV--KDDVVYLLEVNPRASRT----VPFVAKAT 876


>gi|319957728|ref|YP_004168991.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratifractor
           salsuginis DSM 16511]
 gi|319420132|gb|ADV47242.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratifractor
           salsuginis DSM 16511]
          Length = 446

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/250 (17%), Positives = 85/250 (34%), Gaps = 14/250 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I E   + +    +    +  DK ++KQV++  GVP  P  
Sbjct: 78  DAVFPG-YGFLSENQNFVEICEHHGLKFIGPSVEVMQMMADKSKAKQVMAEAGVPTIPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P ++K   GG   G+ V++ +  I    L   +        
Sbjct: 137 DGAVANAEEAKKLAKEIGYPVILKAAAGGGGRGMRVVEDESYIENAFLACEAEAVNAFSD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    +  +             ++          PA +  D  ++ 
Sbjct: 197 GTLYMEKFIEAPRHVEVQVMGDSHGNAIHIGERDCSMQRRHQKLIEESPALVLDDARRKE 256

Query: 228 -QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
               A  A + IG  G    +FL D      +++E+N +  +       EM   +G    
Sbjct: 257 LHEAAVRATKHIGYEGAGTFEFLVDKHKN-FYFMEMNTR--LQVEHCVSEM--VSGL--- 308

Query: 287 ELLLWMVEDA 296
           +++ WM+  A
Sbjct: 309 DIIEWMIRVA 318


>gi|194904684|ref|XP_001981043.1| GG11849 [Drosophila erecta]
 gi|190655681|gb|EDV52913.1| GG11849 [Drosophila erecta]
          Length = 698

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 71/254 (27%), Gaps = 25/254 (9%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSG------ILASALSMDKMRSKQVVSSCGVPVCPS 110
            +H  +G         EL +             I    +               +     
Sbjct: 102 AIHPGYGFLSESVEFAELCQREGIIFMGPPSSAIRDMGIKSTSKAIMAAAGVPIINGYHG 161

Query: 111 ILVNRFT-MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +         +I  P +IK ++GG   G+ + +K       L  + + +        
Sbjct: 162 EDQSDECLQREADIIGFPLMIKAVRGGGGKGMRIAEKRDDFLTALNSARTESEKSFGDSS 221

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
             ++    +   +                     ++          PA    + + +E+ 
Sbjct: 222 VLLERYVRSPRHVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELG 281

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A +A+G  G    +F+ D       ++E+N       P +T +            
Sbjct: 282 EAAVRAAKAVGYVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------I 329

Query: 284 SFRELLLWMVEDAS 297
           +  +L+ W +  A+
Sbjct: 330 TGTDLVEWQIRIAA 343


>gi|99081359|ref|YP_613513.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp.
           TM1040]
 gi|99037639|gb|ABF64251.1| acetyl-CoA carboxylase biotin carboxylase [Ruegeria sp. TM1040]
          Length = 449

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +            DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRQMGDKITAKDTAKALGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            +  P +IK   GG   G+ V + +  +      + S     + + +
Sbjct: 137 GVPDVETAKKVAAEMGYPVIIKATAGGGGRGMKVAQTEADLVQAFQTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            ++  +      P     +  
Sbjct: 197 VYMEKYLQRPRHIEIQVFGDGKGGGVHLGERDCSLQR---RHQKVFEEAPGPCITEEERA 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K  +  A    + +G  G    +FL+     + +++E+N +
Sbjct: 254 KIGKICADAIGK-MGYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|116492708|ref|YP_804443.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
 gi|116102858|gb|ABJ68001.1| carbamoyl-phosphate synthase large subunit [Pediococcus pentosaceus
           ATCC 25745]
          Length = 818

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/284 (13%), Positives = 92/284 (32%), Gaps = 17/284 (5%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHLKPDLAFNVLHG----NFGEDGLVQAI 71
             +    +      V  I+ +    S+  +L   + D+   V          E      I
Sbjct: 50  ANSV---IPRLDVDVKFIEAELTVNSLIQILRENEIDVILPVAGNTVALQLSEQLNESGI 106

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYV 129
           L+ L +              +     +V+     P  P+  +      +     +  P +
Sbjct: 107 LKELNVRTMGVTTTTIHNINNPELMNRVLKHIKEPTIPTTVVENVTDALRFAKRVGFPVL 166

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           IKP+   +    I    +  +   L  +   +  +Q+ +E+ V G      ++     + 
Sbjct: 167 IKPIASLTKTNRIKCDNEHQLMEMLESAFKVSITNQVAVEKSVVG-YKEIEMIVIRDAEG 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
           +++ +   + ++    +S  +        +    ++ ++  A    + +  +G+    F 
Sbjct: 226 SKLLINGGENFNPIGVHSGDSIIFSPTQTLTDVEFQSLRTAALKIAEILKIKGVCHVQFA 285

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            DP   K F   IN  P     S F   A   GY    ++  ++
Sbjct: 286 LDPTDGKHFITRIN--PFFDRSSAF--AARATGYPIANVVAKIL 325


>gi|312129029|ref|YP_003996369.1| carbamoyl-phosphate synthase, large subunit [Leadbetterella
           byssophila DSM 17132]
 gi|311905575|gb|ADQ16016.1| carbamoyl-phosphate synthase, large subunit [Leadbetterella
           byssophila DSM 17132]
          Length = 947

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/283 (11%), Positives = 91/283 (32%), Gaps = 32/283 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A +++G++   I         D D             +V  ++ + KPD     L
Sbjct: 590 HGVLAA-KESGYETIMINCNPETVSTDPDISDKLYFEPVFWENVFDIIEYEKPDGVIVQL 648

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A    +  +K    +   P   ++       
Sbjct: 649 GGQTALKMAEKLTKYGVKIIGTSYEALDLAEDRGRFSTKLQELNIPYPKFDTVRTADKAS 708

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
           +    +  P +++P        + ++  ++ +   +++  +    + +L++ +++  IE 
Sbjct: 709 EVAKELGFPLLVRPSYVLGGQSMKIVINEEELEQHVVKILNDIPDNNILLDHFLENAIEA 768

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           +   + P  +  ++ ++++        A
Sbjct: 769 EADAICDGEDAYIIGIMEHIEPAGIHSG---DSYAVLPPFDLSENVLRQIEEYTKKIAIA 825

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +  +G+    F        V+ +E N +   T     P +   
Sbjct: 826 LDTKGLINIQFAI--KDEVVYVIEANPRASRT----VPFICKA 862



 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 44/318 (13%), Positives = 87/318 (27%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAH-----LKP 51
           SG   A ++   G +V+ I         D              +S+  +L          
Sbjct: 29  SGSQAARSIRQEGIEVALINSNPATIMTDPMNADYVYLKPLEKKSISEILKKHEEMGKPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G    +  +        +   I      I A   + D+   ++ +    V V
Sbjct: 89  THVLPTMGGQTALNLAIDCDKAGIWKKHNIEIIGVDIKAIETTEDRELFRKKMLELKVGV 148

Query: 108 CPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           C            +       P VI+P       G   +   +     L      +   +
Sbjct: 149 CKGRTAKSFLEGKEIAQETGFPLVIRPSYTLGGTGGGFVNTPEEFDAALNHGLHASPVHE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+EQ + G +     +         I     +F    +      +             K
Sbjct: 209 VLVEQSIMGWKEYELELLRDHNGNIVIICTIENFDPMGVHTGDSITVAPAMTLPDTIYQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  + +      G     F  +P +  +  +EIN  P ++  S            +
Sbjct: 269 MRDMAIRMMNGIGQFAGGCNVQFALNPETDDIIAIEIN--PRVSRSSALASKATGYPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY+  EL+  +
Sbjct: 327 IAAKMAIGYNLDELINPI 344


>gi|148711599|gb|ABR02226.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 67/143 (46%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI      + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLIYPVFTKPSNMGSSVGISKSDNQEELRQALRLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A  AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFCAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|2766019|emb|CAB16971.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766021|emb|CAB16972.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766023|emb|CAB16973.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766025|emb|CAB16974.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766027|emb|CAB16975.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766029|emb|CAB16976.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766031|emb|CAB16977.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766033|emb|CAB16978.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766035|emb|CAB16979.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766037|emb|CAB16980.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766039|emb|CAB16981.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766043|emb|CAB16983.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766045|emb|CAB16984.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766047|emb|CAB16985.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766049|emb|CAB16986.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766051|emb|CAB16987.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766053|emb|CAB16988.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766085|emb|CAB17004.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766089|emb|CAB17006.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766091|emb|CAB17007.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766093|emb|CAB17008.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766095|emb|CAB17009.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766097|emb|CAB17010.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766099|emb|CAB17011.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766101|emb|CAB17012.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766103|emb|CAB17013.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766105|emb|CAB17014.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766107|emb|CAB17015.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766111|emb|CAB17017.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766117|emb|CAB17020.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766121|emb|CAB17022.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766123|emb|CAB17023.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766125|emb|CAB17024.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821356|emb|CAA13244.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821366|emb|CAA13250.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821383|emb|CAA13258.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821411|emb|CAA13272.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|3821413|emb|CAA13273.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711409|gb|ABR02131.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711433|gb|ABR02143.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711453|gb|ABR02153.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711473|gb|ABR02163.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711499|gb|ABR02176.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711505|gb|ABR02179.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711509|gb|ABR02181.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711517|gb|ABR02185.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711519|gb|ABR02186.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711521|gb|ABR02187.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711525|gb|ABR02189.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711527|gb|ABR02190.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711549|gb|ABR02201.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711559|gb|ABR02206.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711561|gb|ABR02207.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711563|gb|ABR02208.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711565|gb|ABR02209.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711567|gb|ABR02210.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711569|gb|ABR02211.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711571|gb|ABR02212.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711573|gb|ABR02213.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711575|gb|ABR02214.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711577|gb|ABR02215.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711589|gb|ABR02221.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711593|gb|ABR02223.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711595|gb|ABR02224.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711597|gb|ABR02225.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711601|gb|ABR02227.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711607|gb|ABR02230.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711611|gb|ABR02232.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711619|gb|ABR02236.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711627|gb|ABR02240.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711629|gb|ABR02241.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711633|gb|ABR02243.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711635|gb|ABR02244.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711637|gb|ABR02245.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711639|gb|ABR02246.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711645|gb|ABR02249.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711653|gb|ABR02253.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711655|gb|ABR02254.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711657|gb|ABR02255.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711673|gb|ABR02263.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711675|gb|ABR02264.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711681|gb|ABR02267.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711683|gb|ABR02268.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711691|gb|ABR02272.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711695|gb|ABR02274.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711697|gb|ABR02275.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711699|gb|ABR02276.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711705|gb|ABR02279.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711709|gb|ABR02281.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711711|gb|ABR02282.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711713|gb|ABR02283.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711715|gb|ABR02284.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711725|gb|ABR02289.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711731|gb|ABR02292.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711733|gb|ABR02293.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711735|gb|ABR02294.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711737|gb|ABR02295.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711739|gb|ABR02296.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711755|gb|ABR02304.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711763|gb|ABR02308.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711769|gb|ABR02311.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711789|gb|ABR02321.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711793|gb|ABR02323.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711799|gb|ABR02326.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711803|gb|ABR02328.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711821|gb|ABR02337.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711825|gb|ABR02339.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711827|gb|ABR02340.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711829|gb|ABR02341.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711831|gb|ABR02342.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711833|gb|ABR02343.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|156146828|gb|ABU53426.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|3821371|emb|CAA13252.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFAKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|86136520|ref|ZP_01055099.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           MED193]
 gi|85827394|gb|EAQ47590.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp.
           MED193]
          Length = 1118

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEEFGVEMIGATRDAIEMAEDRKLFRDAMDRLGIENPRATI 148

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V    ++                   I  P +I+P       G  V    +         
Sbjct: 149 VTAPKLEDGKADLNEGVRIALETLEDIGLPAIIRPAFTMGGTGGGVAYNREDYEHFCRTG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENIDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 111/316 (35%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 585 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMVNCNPETVSTDYDTSD 637

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 638 RLYFEPLTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKLANALEEEGIPILGTSPDAID 697

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +++V++ G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 698 LAEDRERFQELVNNLGLKQPHNGIASTDEQALEIAEEIGFPLVIRPSYVLGGRAMEIVRD 757

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 758 MDQLKRYINEAVVVSGDSPVLLDSYLSGAVELDVDAICDGTDVHVAGIMQHIEEAG---V 814

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I +E++   +   +A+   G+    F        +F +E+N +
Sbjct: 815 HSGDSACSLPPYSLSKEILEEIKTQTYALAKALNVVGLMNIQFAI--KDGVIFLIEVNPR 872

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 873 ASRT----VPFVAKAT 884


>gi|332638399|ref|ZP_08417262.1| carbamoyl-phosphate synthase large subunit [Weissella cibaria KACC
           11862]
          Length = 1025

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG   A AL++ G++V  ++ +                      S+  ++   KPD    
Sbjct: 29  SGSQAAIALKEEGYEVVLVNSNPATIMTDKETADKVYIEPLTLASLQTIIQQEKPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G       ++     IL+   +    + + A   + D+ + + +++     VP    
Sbjct: 89  TLGGQTGLNMAKELAESGILDEYNVELIGTKLSAIEAAEDREQFRDLMTELGEPVPASAI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +    +   P +++P       G  + + +  +          +   Q+LIE+
Sbjct: 149 AVTVAEAVQFADVQGYPVIVRPAYTLGGSGGGIAQNEAELVQITQHGLDLSPVTQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDTKDNALIVASMENFDPVGIHTGDSIVVAPVQTLSDVDYQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G         P S K   +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALDIAGGVNIQMALAPDSDKYAIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 42.2 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 88/286 (30%), Gaps = 30/286 (10%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+A  +P        G  
Sbjct: 579 KAIQSAGYEAIVMNSNPETVSTDFSISDKLYFEPLTFEDVREVVALEQPVGVIVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A                 P+  +    +  +    
Sbjct: 639 AINLAADLEKHGINILGTSVADLNRAEDRASFNQVIEKLQLPQPIGQTATTVKEAVKIAK 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + ++  + ++   + ++ + +H   +LI+QYV G+E    V+
Sbjct: 699 SIGYPVLVRPSYVLGGRAMEIVTNEAALADYMSRAVAVSHDHPVLIDQYVVGMEAELDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    VT   +   +           + +   P  +      ++   A    + +   G
Sbjct: 759 SDGETVVTPGVMEHIEPAGIHSG---DSMSVYPPQVLSESRQAKMIAAATALARELQIVG 815

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F+        + +E+N +   T     P ++        +L
Sbjct: 816 LLNVQFVI--QDDTAYVIEVNPRASRT----VPFISKVTDVPLAQL 855


>gi|323448862|gb|EGB04755.1| hypothetical protein AURANDRAFT_38836 [Aureococcus anophagefferens]
          Length = 1808

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/165 (15%), Positives = 62/165 (37%), Gaps = 5/165 (3%)

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              +     +      + +   I  P ++K  +GG   GI +   +  +  + +Q S+  
Sbjct: 206 PPDLFRKAMVTTEDECLKAAARIGYPVMLKASEGGGGKGIRMSHSEDELKSNFVQVSNEV 265

Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G  + + Q   +   L   ++GD       +            +           A   
Sbjct: 266 PGSPMFMMQLCSNARHLEVQIVGDKHGQAVALNGRDCSTQ----RRFQKIFEEAPAAIAK 321

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++++E+++ A    Q+IG  G    ++L+   + K ++LE+N +
Sbjct: 322 PEVFREMEKAAMRLTQSIGYSGAGTVEYLYHAATDKFYFLELNPR 366


>gi|88658256|ref|YP_507303.1| propionyl-CoA carboxylase, alpha subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599713|gb|ABD45182.1| propionyl-CoA carboxylase, alpha subunit [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 655

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 82/247 (33%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L   K  ++A N     +H   G   E+      LE   I +    
Sbjct: 47  EAVNIGPAPVNQSYLNMEKICEVACNTGVDAVHPGYGFLSENADFPEKLEQYNIKFIGPS 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK++  S  V + P  +    ++     I+     P +IK   GG   
Sbjct: 107 STSIRMMADKITSKKIAESAKVNIIPGYMGIVDSVHEAKEIAKSIGFPVMIKATAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++K  + I      +++    +      +++        +    +      +     
Sbjct: 167 GMRIVKSSEEIEQAFTSATNEAAKNFRDGRIFIEKYVELPRHIEIQIIADKHGNIVCLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+    +  ++          + +G       +F+ D   ++ +
Sbjct: 227 RECSIQRHNQKVIEETPSPFLDEETRQKMYQQCVNLAKKVGYYSAGTIEFIVD-QDKQFY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|296445737|ref|ZP_06887690.1| acetyl-CoA carboxylase, biotin carboxylase [Methylosinus
           trichosporium OB3b]
 gi|296256717|gb|EFH03791.1| acetyl-CoA carboxylase, biotin carboxylase [Methylosinus
           trichosporium OB3b]
          Length = 452

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     I+    + +         L  DK+ +K      G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEIVAEHGLTFIGPKAEHIRLMGDKIEAKATARRLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I            I  P ++K   GG   G+ V + D  + + +  + +        
Sbjct: 135 DGPIADEIEGARVAAKIGYPVLVKAASGGGGRGMKVARNDTELAIAIPTARTEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +        + A          L+          P+    D  +  
Sbjct: 195 DTVYLEKYLEKPRHIEIQVFGDGKGAAIHLGERDCSLQRRHQKVWEESPSPALNDEQRAE 254

Query: 228 QRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  + +   G    +FL+   +   +++E+N +
Sbjct: 255 IGEVCAAAMRELKYAGAGTIEFLY--ENGAFYFIEMNTR 291


>gi|254281608|ref|ZP_04956576.1| pyruvate carboxylase [gamma proteobacterium NOR51-B]
 gi|219677811|gb|EED34160.1| pyruvate carboxylase [gamma proteobacterium NOR51-B]
          Length = 1148

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I     +   + +              Y++ +    
Sbjct: 150 QAAEIGYPLMLKASWGGGGRGMRPIAGPDELEEKIREGRREAEAAFGNGAGYLEKMIERA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L     A+         ++  +       PA     +   EV  L       +
Sbjct: 210 RHVEVQILGDQHGAIYHLWERDCSIQRRNQKVVERAPAPYLSDEQRTEVCELGRRIAAHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D  + K +++E+N +
Sbjct: 270 GYECAGTVEFLMDMDTEKFYFIEVNPR 296


>gi|260796501|ref|XP_002593243.1| hypothetical protein BRAFLDRAFT_124863 [Branchiostoma floridae]
 gi|229278467|gb|EEN49254.1| hypothetical protein BRAFLDRAFT_124863 [Branchiostoma floridae]
          Length = 1039

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 58/183 (31%), Gaps = 19/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K ++GG   G+ ++  +      L  +              V+    T  
Sbjct: 188 AEKIGYPVMVKAVRGGGGKGMRIVMTEAEFEEQLESAKREALKSFNDEIMLVEKFVDTPR 247

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         ++          PA     ++ + +   A  A +A+ 
Sbjct: 248 HVEVQVFGDQHGNVVYLFERDCSVQRRHQKIIEEAPAPGLTEEVRRRLGEAAVRAAKAVN 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D   +  +++E+N       P         EM      +  +L+ W ++
Sbjct: 308 YVGAGTVEFIMD-KDQNFYFMEMNTRLQVEHP-------VTEM-----VTHTDLVEWQIK 354

Query: 295 DAS 297
            A+
Sbjct: 355 AAA 357


>gi|164659702|ref|XP_001730975.1| hypothetical protein MGL_1974 [Malassezia globosa CBS 7966]
 gi|159104873|gb|EDP43761.1| hypothetical protein MGL_1974 [Malassezia globosa CBS 7966]
          Length = 1143

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAF- 55
           SG     AL ++G +   I+ +                       V  VL   +PD  F 
Sbjct: 84  SGSQAIKALRESGIETVLINPNIATIQTSQQLASRIYFLPVSPDYVAYVLERERPDGVFL 143

Query: 56  -----NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                + L+     D +       +++  +   +L      D            V    +
Sbjct: 144 NFGGQSALNVGVKLDEMGVFERLGVQVLGSQPDVLRMCEDRDLFVQALDQIQIPVARSEA 203

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   I  P +++       LG      ++ +    L + S +   Q+L+E+
Sbjct: 204 VSTVKEALRAADEIGYPVIVRAAYALGGLGSGFADNEEELRD--LSARSLSLSPQILVEK 261

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G + +             +     + +     ++  +        +  D Y  ++  
Sbjct: 262 SLRGWKES-EYEVLRDQQDNALICCNMENFDPLGIHTGDSIVVAPSQTLSDDNYHMLRTA 320

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P SR+   +E+N  P ++  S     +   GY   
Sbjct: 321 ALKVIRHLGIVGECNIQYALSPDSREYRVIEVN--PRLSRSS--ALASKATGYPLA 372


>gi|156146884|gb|ABU53454.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/143 (30%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLRYPVFTKPSNMGSSVGISKSENKEELHQALELAF--KYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY YE KY     T  +PAKI  ++   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKISDNVVAVMRRNAEAAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     +VF  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEVFLNE 146


>gi|3821405|emb|CAA13269.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.3 bits (126), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRPALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|260366194|ref|ZP_05778654.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus K5030]
 gi|260879836|ref|ZP_05892191.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|260894510|ref|ZP_05903006.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308086571|gb|EFO36266.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308092680|gb|EFO42375.1| methylcrotonoyl-CoA carboxylase, alpha subunit [Vibrio
           parahaemolyticus AN-5034]
 gi|308114844|gb|EFO52384.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Vibrio parahaemolyticus K5030]
          Length = 691

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D++ ++       + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIN-AIIDAAKKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       ++D        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVDHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  V+   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 292


>gi|259416676|ref|ZP_05740596.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter sp.
           TrichCH4B]
 gi|259348115|gb|EEW59892.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter sp.
           TrichCH4B]
          Length = 449

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +            DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRQMGDKITAKDTAKALGIPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            +  P +IK   GG   G+ V + +  +      + S     + + +
Sbjct: 137 GVPDVETAKTVAADMGYPVIIKATAGGGGRGMKVAQTEADLVHAFQTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            ++  +      P     +  
Sbjct: 197 VYMEKYLQRPRHIEIQVFGDGKGGGVHLGERDCSLQR---RHQKVFEEAPGPCISEEERA 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +  A    + +G  G    +FL+     + +++E+N +
Sbjct: 254 RIGKICADAIGK-MGYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|218526176|gb|ACK86495.1| carbamoyl-phosphate synthase [Corydalus armatus]
          Length = 720

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 84/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   K   I+ +                       V  V+   +PD    
Sbjct: 123 SGSQAIKALREENVKTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPDGVLL 182

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G       I E        + I +   + D+     +    +  V    +
Sbjct: 183 TFGGQTALNCGVKLQHTGIFEKYGCKILGTPIQSIIETEDRKIFSERINEINERVAPSAA 242

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG         +   +L   +  H  QL+I++
Sbjct: 243 VYSVSEALDAAEKLGYPVMARAAFSLGGLGSGFANNKDEL--KILAQQALAHSSQLIIDK 300

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 301 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVIAPSRTLSNREYNMLRTT 359

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 360 AIKVIRHFKVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 415

Query: 291 WM 292
            +
Sbjct: 416 KL 417


>gi|186476841|ref|YP_001858311.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phymatum STM815]
 gi|184193300|gb|ACC71265.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phymatum STM815]
          Length = 404

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 81/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D    +++  ++   +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDAKALRALVEEEQPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIETEGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSVEELK 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  I      +      +  ++++E +++   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADIEPAWQYAMAGGRVNHGRVIVEGFINFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T+            ++ +        P  +     ++ + +A     
Sbjct: 207 EITQLTVRAIEPATQQTATYFCDPIGHVQVAGDYVESWQPQPMSPRALEQSRDIADKVTT 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|3821391|emb|CAA13262.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711429|gb|ABR02141.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711441|gb|ABR02147.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711445|gb|ABR02149.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|28900983|ref|NP_800638.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|28809429|dbj|BAC62471.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           RIMD 2210633]
          Length = 704

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D++ ++       + D      +G   E+  +        I +      A      K +
Sbjct: 74  LDIN-AIIDAAKKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQ 131

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       ++D        I  P ++K  +GG   G+ V+     +P
Sbjct: 132 AKAIMSEANVPLVPGYHGTDNSVDHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 191

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  V+   L    +                     ++      
Sbjct: 192 LAIDGAQREALSSFGDKQLLVEKCILQPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQKV 251

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 252 VEEAPAPGLSDELRKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 305


>gi|325982939|ref|YP_004295341.1| phosphoribosylglycinamide formyltransferase 2 [Nitrosomonas sp.
           AL212]
 gi|325532458|gb|ADZ27179.1| Phosphoribosylglycinamide formyltransferase 2 [Nitrosomonas sp.
           AL212]
          Length = 404

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 85/275 (30%), Gaps = 27/275 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                      +++  ++   +PD+    +
Sbjct: 28  GKEVIIALQRLGVETIAVDRYADAPGHQVAHRAHVINMADGQALRALIERERPDIIVPEI 87

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                +  +    + +   IP   +  L       +  + + +     P   +  ++   
Sbjct: 88  EAIATDMLVEIEQMGMAAVIPTARAAKLTMNREGIRCLAAETLGLPTSPYVFANSLDELR 147

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIE 176
                 I  P ++KP+   S  G   I+    I      ++S +  +Q  +I + V   +
Sbjct: 148 AAIDGKIGYPCIVKPVMSSSGKGQSRIENADEIEAAWHYAASGSRVNQGRVIVEGVIHFD 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                +   +L                ++          P  +     +  + +A     
Sbjct: 208 YEITQLTVRALGADGSVKTHFCEAIGHVQVQGDYVESWQPQGMSPIALERAREMAKKITD 267

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +G  G+   +        +V++ E++ +P   GM
Sbjct: 268 DLGGLGVFGVELFI--KGDEVWFSEVSPRPHDTGM 300


>gi|307243579|ref|ZP_07525725.1| pyruvate carboxylase [Peptostreptococcus stomatis DSM 17678]
 gi|306493046|gb|EFM65053.1| pyruvate carboxylase [Peptostreptococcus stomatis DSM 17678]
          Length = 1146

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 34/239 (14%), Positives = 80/239 (33%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    K D      +G   E+       E   I +            DK+ 
Sbjct: 65  LDIDG-IISLAKRKKVDAIHPG-YGFLSENAEFARKCEENGITFIGPDSSIMEKLGDKIN 122

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V     VP  P +       +        I  P ++K   GG   G+ ++++++ + 
Sbjct: 123 SKIVAHEANVPTIPGVEKALKTVKEAKQVAEKIGYPVMVKASNGGGGRGMRIVRREEDLE 182

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++          ++      + +   D   +   V+GD   ++  +            + 
Sbjct: 183 IEFENARSESRKAFGEDLIFIEKYIEDPKHIEVQVLGDKYGNIVHLYERDCSVQ----RR 238

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  D+ + + + A    + +G       +FL D  +   +++E+N +
Sbjct: 239 HQKIIEFAPAFSLDPDVRERICQDAVRIAKHVGYTNAGTLEFLVD-KNGDYYFIEMNTR 296


>gi|297584255|ref|YP_003700035.1| carbamoyl-phosphate synthase large subunit [Bacillus
           selenitireducens MLS10]
 gi|297142712|gb|ADH99469.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           selenitireducens MLS10]
          Length = 1079

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/264 (14%), Positives = 74/264 (28%), Gaps = 16/264 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +D    V  V+   + +       G    +         + +  T S  + 
Sbjct: 610 DRLYFEPLSLD---DVWSVIVKEQVEGVIVQFGGQTAINLAADLEELGVHVFGTSSKAIN 666

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +    +                           +   +  P +I+P        + +   
Sbjct: 667 AVEDREVFYELLNQFDIDHIRGEMAHGPYELKGAADKLGFPVLIRPSYVIGGQSMFICYD 726

Query: 147 DQSIPLDLLQSSSWNHGDQL--LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
              +     +     +      LI+QYV G E    V+ D    +     P    +  + 
Sbjct: 727 HDELETYAERIQLETNDRCWPLLIDQYVPGKECEVDVITDGQDILI----PGIFEHLEKA 782

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEIN 263
              S +S  + P+    D  K++           G   G+    F+       V+ LE+N
Sbjct: 783 GVHSGDSVTIFPSITLTDTEKQMITDISKTIAVEGKINGMMNIQFVLHE--GHVYVLEVN 840

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRE 287
            +   T     P M+   G    E
Sbjct: 841 PRSSRT----VPIMSKVTGVPMIE 860



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 90/307 (29%), Gaps = 38/307 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFNV 57
           G     AL++AG +V  ++ +                      S+  +    KPD     
Sbjct: 30  GTQACLALKEAGIEVLLLNNNPATIMTDSTIVDHVYFEPMTIQSIEKIFKQEKPDGMIGT 89

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  + A          +++  T    +      +K R   +     +     +
Sbjct: 90  LGGQTGLNLTIAAHDAGLFETYGVKLLGTSVDAIQKGEDREKFRQLMIDIDEPIAESSIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +++P       G      D+     L      +   Q+L+E+ 
Sbjct: 150 ETVEEGFAFVEEIGYPVILRPAYTLGGAGGGFAYNDEEFETILKNGLKQSPIHQVLVEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T   V   +       ++  +        +    ++ ++  +
Sbjct: 210 IKGW-KEVEYEVMRDANDTCTIVCNMENMDPVGVHTGDSIVVAPSQTLTDVQFQMLRTSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+G  G     F   P +     +E+N  P ++  S     +   GY     +  
Sbjct: 269 LKVIRALGVIGGCNIQFALHPKTDDYVIIEVN--PRVSRSS--ALASKATGYP----IAR 320

Query: 292 MVEDASC 298
           +   A C
Sbjct: 321 I--AAQC 325


>gi|299473202|emb|CBN78778.1| Carbamoyl-phosphate synthase (glutamine-hydrolyzing) [Ectocarpus
           siliculosus]
          Length = 1487

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 47/326 (14%), Positives = 103/326 (31%), Gaps = 53/326 (16%)

Query: 18  SGKACASALEDAGFKVSQIDVD--------------------------RSVGLVLAHLKP 51
           SG     AL++ G +V  ++ +                            V  V+   KP
Sbjct: 419 SGSQAIKALKEEGIEVILMNPNIASVQTNTDNKSPHKADQVFFLPVTPEFVEHVIKREKP 478

Query: 52  DLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GV 105
           D     + G              ILE   +    + + A   + D+    Q +      V
Sbjct: 479 DGIVVSMGGQTALNCAVQLHEAGILEKYNVKVLGTPVQAIMATEDRDVFNQKLMEIGEKV 538

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               +++     + +   I  P +I+       LG  +   ++++    + S + +  +Q
Sbjct: 539 APSEAVVGVEAAVVAAKKIGFPVMIRSAYALGGLGSGICDTEEALRD--MGSKALSLSNQ 596

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ + G                 I V   + +     ++  +        +    Y 
Sbjct: 597 ILVEKSLRGW-KEVEYEVVRDSVNNCITVCNMENFDPLGVHTGDSIVVAPSQTLSNTEYH 655

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMA 278
            +++ A    + +G  G     +  DP S     +E+N +  ++  S        +P   
Sbjct: 656 MLRQTALKVVRHLGIVGECNIQYALDPHSLDYCIIEVNAR--LSRSSALASKATGYPLAF 713

Query: 279 AYA----GYSFRELLLWMVEDASCLR 300
             A    G +  +     +E+A   R
Sbjct: 714 VAAKLGMGITLPD-----IENAITKR 734


>gi|312073380|ref|XP_003139494.1| carboxyl transferase domain-containing protein [Loa loa]
 gi|307765338|gb|EFO24572.1| carboxyl transferase domain-containing protein [Loa loa]
          Length = 2148

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 58/159 (36%), Gaps = 5/159 (3%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           C         +     I  P +IK  +GG   GI +++ +    ++  +  +   G  + 
Sbjct: 235 CVYDHEEAIHVMKAKKIPYPVMIKASEGGGGKGIRLVRSESDFEVNFRRVQAEVAGGHIF 294

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +   ++G   +   ++GD   +V  +            K          P      + + 
Sbjct: 295 LMYCLEGARHIEVQLLGDMYGEVIALRTRDCTVQRRCQKIIEEAPAIAAPLS----VQRN 350

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  A    + +G       ++LF P + + F+LE+N +
Sbjct: 351 MEADAVRLAKMVGYVSAGTVEYLFLPHTNEYFFLELNPR 389


>gi|2245426|gb|AAB62520.1| D-alanine:D-alanine ligase [Streptococcus intermedius]
          Length = 197

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++LIEQ V+  E+  G
Sbjct: 57  EVNLTYPVFTKPSNMGSSVGISKSENKDELCSALKLAF--KYDTRVLIEQGVNAREIEVG 114

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           + G+     +     V    FY YE KY     T  +PAK+  D+   +   A  A  AI
Sbjct: 115 LFGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITMDIPAKLSEDVIATMCDYAEKAFHAI 174

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 175 GGVGLSRCDFFYT-NKGEIFLNE 196


>gi|212695461|ref|ZP_03303589.1| hypothetical protein BACDOR_05015 [Bacteroides dorei DSM 17855]
 gi|212661986|gb|EEB22560.1| hypothetical protein BACDOR_05015 [Bacteroides dorei DSM 17855]
          Length = 429

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 74  CNAIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 133

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 134 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVN 193

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 194 YSGAGTIEFLVD-KNRDFYFLEMNTR 218


>gi|71905716|ref|YP_283303.1| allophanate hydrolase subunit 2 [Dechloromonas aromatica RCB]
 gi|71845337|gb|AAZ44833.1| Allophanate hydrolase subunit 2 [Dechloromonas aromatica RCB]
          Length = 1201

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 57/184 (30%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +I  +  +             +      Y++    +  
Sbjct: 147 AARIGYPVMLKSTAGGGGIGMRLIWAEDELAEAFASVDRLARANFKEAGIYLEKYVESAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++  +       PA    D   + +   A     ++ 
Sbjct: 207 HIEVQVFGDGVGKVLALGERDCSVQRRNQKVIEETPAPGLNDAQRQGLAETAVRLMASVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +F+ D  +   ++LE+N +     G+T            G    +L+ WMV  
Sbjct: 267 YRSAGTVEFVMDAATGAFYFLEVNTRLQVEHGVTE--------EVTGV---DLVAWMVLL 315

Query: 296 ASCL 299
           AS  
Sbjct: 316 ASGD 319


>gi|307565360|ref|ZP_07627853.1| carbamoyl-phosphate synthase, large subunit [Prevotella amnii CRIS
           21A-A]
 gi|307346029|gb|EFN91373.1| carbamoyl-phosphate synthase, large subunit [Prevotella amnii CRIS
           21A-A]
          Length = 1074

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   KPD    
Sbjct: 28  SGSQALKALREEGISTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKEKPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     IL+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELERSGILKKHNVRVLGTPVGAIMNTEDRELFVERLYEIEVKTIKSEA 147

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +  ++  P +++       LG      +Q +    L   +++   Q+L+E+
Sbjct: 148 CENINQARHAATILGYPVIVRAAYALGGLGSGFADNEQELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNTEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|324506496|gb|ADY42774.1| Methylcrotonoyl-CoA carboxylase subunit alpha [Ascaris suum]
          Length = 681

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 48/152 (31%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P ++K + GG   G+ +          L  + S     + + + ++ +    
Sbjct: 174 HEAANIGYPVMLKAVYGGGGKGMRIAWNANEFNEKLASARSEALKAFGNDEMIVEKFVER 233

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD       +            +             +       +   A  
Sbjct: 234 PRHVEVQVFGDHHGSYVYLWERDCSVQ----RRHQKIIEEAPAPGLDTKARLRLGESAVR 289

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+G  G    +F+ DP   + F++E+N +
Sbjct: 290 AARAVGYVGAGTVEFIMDPR-GEFFFMEMNTR 320


>gi|260779559|ref|ZP_05888449.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio
           coralliilyticus ATCC BAA-450]
 gi|260604368|gb|EEX30672.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio
           coralliilyticus ATCC BAA-450]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADEAICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAIAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRIMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLNDDEATNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 AEMRKYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|195575386|ref|XP_002105660.1| GD16261 [Drosophila simulans]
 gi|194201587|gb|EDX15163.1| GD16261 [Drosophila simulans]
          Length = 698

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 60/183 (32%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K       L  + + +          ++    +  
Sbjct: 173 ADIIGFPLMIKAVRGGGGKGMRIAEKPDDFLTALNSARTESEKSFGDSSVLLERYVRSPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + + +E+   A  A +A+G
Sbjct: 233 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEDLRRELGEAAVRAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D       ++E+N       P +T +            +  +L+ W + 
Sbjct: 293 YVGAGTVEFILDKEDLSFHFMEMNTRLQVEHP-ITEM-----------ITGTDLVEWQIR 340

Query: 295 DAS 297
            A+
Sbjct: 341 IAA 343


>gi|145341560|ref|XP_001415874.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144576097|gb|ABO94166.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 2012

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 61/162 (37%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + +   I  P ++K  +GG   GI +   ++ +  +  Q  +   G 
Sbjct: 152 IFNKAMVTTVEECVAAAKRIGFPVMLKASEGGGGKGIRMSADEEQLRTNFEQVKAEVPGS 211

Query: 165 QLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + + Q       L   ++GD   +   +            +          P     +I
Sbjct: 212 PMFMMQLCTQARHLEVQIVGDEYGNAIALNGRDCSTQ----RRFQKIFEEGPPTIAKPEI 267

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++E+++ A    + IG  G    ++L++  + K F+LE+N +
Sbjct: 268 FREMEKAAQRLTKNIGYIGAGTVEYLYNAATDKYFFLELNPR 309


>gi|3821419|emb|CAA13276.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAEAAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|315640765|ref|ZP_07895867.1| pyruvate carboxylase [Enterococcus italicus DSM 15952]
 gi|315483520|gb|EFU74014.1| pyruvate carboxylase [Enterococcus italicus DSM 15952]
          Length = 1162

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 75/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K D     +H   G   E+       E   I +    +    + 
Sbjct: 75  KPIDAYLDIEGIIQIAK-DAGAEAIHPGYGFLSENLAFAKRCEEEGIIFIGPSVHHLDIF 133

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+++K+     G+   P     +               P +IK   GG   G+ V   
Sbjct: 134 GDKIKAKEAAIDAGIQSIPGTDGPVESVDDVQAFGEQYGYPIMIKAALGGGGRGMRVAHN 193

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            +       ++ S     + + +  + +   D   +   ++GD   +V  +         
Sbjct: 194 AKEAVEGYQRAKSEAKAAFGNDEIYVEKYIQDPKHIEVQILGDQYGNVIHLFERDCSVQ- 252

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  +  +++   A    + +G       +FL        +++E
Sbjct: 253 ---RRHQKVVEVAPCVSMNDEQREKICSAAVQLMKHVGYINAGTVEFLV--EGDDFYFIE 307

Query: 262 INVQ 265
           +N +
Sbjct: 308 VNPR 311


>gi|315231798|ref|YP_004072234.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           barophilus MP]
 gi|315184826|gb|ADT85011.1| Phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           barophilus MP]
          Length = 429

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/288 (12%), Positives = 84/288 (29%), Gaps = 28/288 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                    D+     +    KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVIAVDRYPNAPAMQVAHKSYVGNMKDKDFLWSIVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFEFEKEGYFVVPNARATWIAMHRERTRETLAKEAKVPT-SRYRYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
           D+   I  P   K +   S  G   +K  + +P    ++     G  D++++E+++D   
Sbjct: 147 DACEKIGYPCHTKAIMSSSGKGSYFVKGPEDVPKAWEEAKKKARGSADKIIVEEHIDFEV 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +      +  ++         +  +      +   PA+I     ++V  +A     
Sbjct: 207 EITELAVRHLDENGKVVTTFPKPVGHY-QIKGDYHSSWQPAEISEKAERKVYEIAKKITD 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 266 VLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMATLASHPTGFS 309


>gi|15890708|ref|NP_356380.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           tumefaciens str. C58]
 gi|15158979|gb|AAK89165.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           tumefaciens str. C58]
          Length = 464

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+    S+   +  +             Y++       
Sbjct: 163 AQEIGYPVIVKAAGGGGGRGMRVVPDAGSLHEAIPTTREEARQAFGSPALYMEKFLQHPR 222

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L  T             ++          PA  I  D+ + V +    A Q IG
Sbjct: 223 HIEIQVLCDTHGHAVWLGHRDCSMQRRHQKVVEEAPAPGISPDVIRSVGQACVEACQQIG 282

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+   +   +++E+N +
Sbjct: 283 YRGVGTFEFLY--ENGAFYFIEMNTR 306


>gi|229520985|ref|ZP_04410406.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TM
           11079-80]
 gi|229341870|gb|EEO06871.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TM
           11079-80]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|19551919|ref|NP_599921.1| pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|62389578|ref|YP_224980.1| pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|2708717|gb|AAB92588.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|2879823|emb|CAA70739.1| pyruvate carboxylase [Corynebacterium glutamicum]
 gi|21323455|dbj|BAB98082.1| Pyruvate carboxylase [Corynebacterium glutamicum ATCC 13032]
 gi|41324913|emb|CAF19394.1| PYRUVATE CARBOXYLASE [Corynebacterium glutamicum ATCC 13032]
          Length = 1140

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 76/234 (32%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G     +K D  +   +G   E+  +        I +         L+ DK R
Sbjct: 72  LDIDEIIGAA-KKVKADAIYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSR 129

Query: 96  SKQVVSSCGVP---VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P              + S    + P  +K + GG   G+  +     +  
Sbjct: 130 AVTAAKKAGLPVLAESTPSKNIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVASPDELRK 189

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L      V         L+       
Sbjct: 190 LATEASREAEAAFGDGAVYVERAVINPQHIEVQILGDHTGEVVHLYERDCSLQRRHQKVV 249

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    ++   +   A    ++IG +G    +FL D     V ++E+N +
Sbjct: 250 EIAPAQHLDPELRDRICADAVKFCRSIGYQGAGTVEFLVDEKGNHV-FIEMNPR 302


>gi|312962236|ref|ZP_07776728.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens WH6]
 gi|311283573|gb|EFQ62162.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens WH6]
          Length = 627

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 56/153 (36%), Gaps = 10/153 (6%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYV 172
                 I  P +IK   GG   G+ ++ + + +   L        +++   + +L +  +
Sbjct: 147 HAEAERIGYPLMIKASAGGGGRGMRLVHQREQLLEHLRTARSEAQNAFGSDELILEQALI 206

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +   +   + GD   ++  +            +             +  ++ + +   A 
Sbjct: 207 EPRHVEIQLFGDTQGNLIYLGERDCSIQ----RRHQKVIEEAPCPVMTSELRQAMGEAAL 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A +A+   G    +FL D  + + ++LE+N +
Sbjct: 263 KAGRAVNYVGAGTVEFLLD-RNGRFYFLEMNTR 294


>gi|307257159|ref|ZP_07538931.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
 gi|306864321|gb|EFM96232.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 10 str. D13039]
          Length = 378

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 9   GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 69  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 128 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 178

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 179 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 238

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 239 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 296

Query: 285 FREL 288
             E+
Sbjct: 297 ISEI 300


>gi|307252744|ref|ZP_07534635.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306859776|gb|EFM91798.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
          Length = 400

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 31  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 90

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 91  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 149

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 150 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 201 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 261 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 318

Query: 285 FREL 288
             E+
Sbjct: 319 ISEI 322


>gi|303250145|ref|ZP_07336347.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307255003|ref|ZP_07536821.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|307259439|ref|ZP_07541164.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
 gi|302651208|gb|EFL81362.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306861876|gb|EFM93852.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 9 str. CVJ13261]
 gi|306866375|gb|EFM98238.1| Phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 11 str. 56153]
          Length = 393

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 ISEI 315


>gi|296273178|ref|YP_003655809.1| RimK domain-containing protein ATP-grasp [Arcobacter nitrofigilis
           DSM 7299]
 gi|296097352|gb|ADG93302.1| RimK domain protein ATP-grasp [Arcobacter nitrofigilis DSM 7299]
          Length = 304

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/260 (14%), Positives = 81/260 (31%), Gaps = 22/260 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +   K DL F+   G   +  +      L  +    +   A  L+ DK  +  ++ 
Sbjct: 51  LYDKIKLEKLDLFFSYNAGEQTQYQMYLYKA-LNRVIPMINSYEAFELTEDKFHTSFLLR 109

Query: 102 SCGVPVCPSILVNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           + GV      L +R                V KP  G   +G+  I+ ++++ + +   +
Sbjct: 110 THGVKTADYKLCHRDDTFHLNTIMKKWSKMVYKPTDGWGGVGLTKIENEEALNMLIPFLN 169

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                     +     +E                      +           +     + 
Sbjct: 170 QM--------DLRYFYVEKFIDYDNTDYRIDIVDGQFVGCYGRKANGAEWRTNVTSGGSV 221

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
              +  ++V  LA  A +  G   I+  D ++D    +   LE+N  P        PE  
Sbjct: 222 FLREPNEDVINLALKAAKITGL-DIAGVDIIYDRKKEEFIVLEVNGIPAFAT----PEQ- 275

Query: 279 AYAGYSFR----ELLLWMVE 294
              G  F     +L++ +++
Sbjct: 276 EKMGLDFNDKKIDLIVDLID 295


>gi|145251636|ref|XP_001397331.1| hypothetical protein ANI_1_1300144 [Aspergillus niger CBS 513.88]
 gi|134082867|emb|CAK42697.1| unnamed protein product [Aspergillus niger]
          Length = 376

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 65/213 (30%), Gaps = 23/213 (10%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +P    +    F+     + S P V KP++G  S G+ V      +   +      + 
Sbjct: 155 YTLPSSWLVSPKDFSEVINKINSYPIVGKPIRGRGSHGVKVCHDKTQLQQHIQTLLHESP 214

Query: 163 ---------GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE-LKYSSLNST 212
                    G++  I       +         S+              Y  +   + NS 
Sbjct: 215 LVMLEGFLAGEEATITVMPPTRDR----PQHWSMLPVTRFNHAEGIAPYNGVVAVTANSR 270

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--- 269
            + P ++    Y +V R        IG     R D             +IN++P MT   
Sbjct: 271 AISPNELKDPAYGKVMRECESVAALIGATAPIRVDVRRFAEGSDFALFDINMKPNMTGPG 330

Query: 270 ------PVSIFPEMAAYAGYSFRELLLWMVEDA 296
                   S+    A+  G+ +  LL  ++  A
Sbjct: 331 RPGRQDQASLTAIAASAMGWDYSTLLQNILMGA 363


>gi|157867167|ref|XP_001682138.1| carbamoyl-phosphate synthase [Leishmania major strain Friedlin]
 gi|68125590|emb|CAJ03575.1| putative carbamoyl-phosphate synthase [Leishmania major strain
            Friedlin]
          Length = 1842

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 93/314 (29%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++  +      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMALSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDELGVLQPEWISATSVEQVHEFCDTVGYPALVRPSYVLSGSAMAVIANREDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEAATEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL      ++  +E NV+   +  S  P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GQLRVIEANVR---SSRS-VP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 96/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  +++  + +   +  +       Q+L+E
Sbjct: 513 AVTSVEEAVAASKDIGFPMMVRAAYCLGGQGSGIVENMEELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGIHTGESIVVAPSQTLSNDEFHMLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|70731550|ref|YP_261291.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68345849|gb|AAY93455.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 651

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ ++ +   +   +  +      ++   + +L +  ++  
Sbjct: 150 AQRIGYPLMIKASAGGGGRGMRLVHQAGQLLEQIRTARSEALHAFGSDELILEQALIEPR 209

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD    +  +            +             +  ++ + +   A  A 
Sbjct: 210 HVEVQLFGDEHGQLIYLGERDCSIQ----RRHQKVIEEAPCPVMTPELRQAMGEAALKAG 265

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D  S + ++LE+N +
Sbjct: 266 RAVNYVGAGTVEFLLDA-SGQFYFLEMNTR 294


>gi|46143324|ref|ZP_00135461.2| COG0027: Formate-dependent phosphoribosylglycinamide
           formyltransferase (GAR transformylase) [Actinobacillus
           pleuropneumoniae serovar 1 str. 4074]
          Length = 316

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  ++   KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALVEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 ISEI 315


>gi|328470884|gb|EGF41795.1| putative acyl-CoA carboxylase alpha chain [Vibrio parahaemolyticus
           10329]
          Length = 691

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 80/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPSTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSIEHLSAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  ++   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLIEKCILRPRHVEVQVFADQHGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++ + A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRKQMGKAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 292


>gi|326796323|ref|YP_004314143.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas
           mediterranea MMB-1]
 gi|326547087|gb|ADZ92307.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas
           mediterranea MMB-1]
          Length = 446

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A ++ G K   +   +DR +  V LA            D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSKIDRDLLHVRLADETICIGPNPSKDSYLNIPALISAAELT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + + + GVP  P 
Sbjct: 74  DTSAIHPGYGFLAENADFAEQVENSGFTFIGPKAETIRLMGDKVSAIKAMKAAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       +     I  P ++K   GG   G+ V+  + S+   +  + S      
Sbjct: 134 SNGPVPSDPEECIKIAREIGFPVIVKAAAGGGGRGMRVVHNEASLLKSISITQSEAGSYF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +    +   +            L+          PA +   +  
Sbjct: 194 GDSTVYMEKFLQNPRHVEVQVIADGQGNAVHLYDRDCSLQRRHQKVLEEAPAPMLDPESR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +    A   IG RG    +FL+       +++E+N +
Sbjct: 254 AQCLQACVDACIKIGYRGAGTFEFLY--EDGGFYFIEMNTR 292


>gi|309789560|ref|ZP_07684141.1| acetyl-CoA carboxylase, biotin carboxylase [Oscillochloris
           trichoides DG6]
 gi|308228296|gb|EFO81943.1| acetyl-CoA carboxylase, biotin carboxylase [Oscillochloris
           trichoides DG6]
          Length = 457

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 67/212 (31%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I    ++ +         L  DK   +Q + + GVP+ P     +   
Sbjct: 82  YGFLSENPYFAEICAECKLTFIGPSAETIRLMGDKSIGRQTMRAAGVPIIPGSEGELQSV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +D    I  P ++KP  GG   G+ V   +  +      + +   G     +  ++ 
Sbjct: 142 EEAVDLARQIGYPVLLKPSAGGGGRGMRVANDESELIRAFSTARAEAEGAFGRGDLILEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +    L                 +          P   +  ++   +   A  
Sbjct: 202 YLPKVRHVEIQVLADAYGHAIHLGERDCSAQRRHQKILEEAPSPVVTPEVRARMGADALR 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             Q+IG       +FL DP     +++E+N +
Sbjct: 262 GIQSIGYLNAGTLEFLMDP-DGNYYFIEMNTR 292


>gi|307944271|ref|ZP_07659612.1| carbamoyl-phosphate synthase, large subunit [Roseibium sp.
           TrichSKD4]
 gi|307772617|gb|EFO31837.1| carbamoyl-phosphate synthase, large subunit [Roseibium sp.
           TrichSKD4]
          Length = 1120

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 86/320 (26%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+++  +         D D              V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIILVNSNPATIMTDPDLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
            + G         ++ +  L E      G  A  +   + R K   +   + +       
Sbjct: 89  TMGGQTALNCALDLEQMGVLEEFGVQMIGAKADVIEKAEDREKFRAAMDTIGLENPRAAI 148

Query: 115 R----------------------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                                    M +   I  P +I+P       G  V    +    
Sbjct: 149 ASSPAIRDENGKIKGYDRNAGLLEAMRALDDIGLPAIIRPAFTLGGTGGGVAYNKEEFEA 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                   +   Q+LI++ + G +     +     D   I     +     +      + 
Sbjct: 209 IAKSGIDASPVGQVLIDESLLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  +P + ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRDASIAVLREIGVETGGSNVQFAVNPDNGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344


>gi|255323919|ref|ZP_05365045.1| pyruvate carboxylase [Corynebacterium tuberculostearicum SK141]
 gi|255299099|gb|EET78390.1| pyruvate carboxylase [Corynebacterium tuberculostearicum SK141]
          Length = 1143

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +       + D  +   +G   E   +    E   I +         L+ DK  
Sbjct: 69  LDIDE-IIRAAKKAEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKAA 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P       +             + P  +K + GG   G+  ++ +  +  
Sbjct: 127 AVSAAKEAGLPTLQDSEPSTDVDKLVEYSKDFNFPVFVKAVAGGGGRGMRFVESEDQLRE 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 187 KAAEASREAEAAFGDGSVYLETAVINPQHIEVQILADSQGNVVHLFERDCSVQRRHQKVV 246

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     ++   + + A    + I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAPSLDSELRDRICQDAVKFCEHINYEGAGTVEFLVDERGNHV-FIEMNPR 299


>gi|254787027|ref|YP_003074456.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Teredinibacter
           turnerae T7901]
 gi|237685735|gb|ACR12999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Teredinibacter
           turnerae T7901]
          Length = 446

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/154 (15%), Positives = 55/154 (35%), Gaps = 11/154 (7%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQY 171
            ++    I  P +IK   GG   G+ V+  + S+   +  + S     +      + +  
Sbjct: 145 CIEIARRIGFPVIIKAAAGGGGRGMRVVHTEASLWNSIQVTKSEAKAAFGDDTVYMEKFL 204

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            +   +   ++ D   +   +            K         +P     ++ +EV +  
Sbjct: 205 QNPRHVEVQIISDGQGNTVHLFDRDCSLQRRHQKVLEEAPAPGIPE----EVRQEVYQSC 260

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A   IG RG    +FL+     + +++E+N +
Sbjct: 261 VHACNEIGYRGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|254461461|ref|ZP_05074877.1| pyruvate carboxylase [Rhodobacterales bacterium HTCC2083]
 gi|206678050|gb|EDZ42537.1| pyruvate carboxylase [Rhodobacteraceae bacterium HTCC2083]
          Length = 1147

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 47/155 (30%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       +  P ++K   GG   G+  I  +  +   +L+            E Y
Sbjct: 142 NDMDAVKREAGEVGYPLMLKASWGGGGRGMRPIYSEDEVEEKVLEGRREAEAAFGNDEGY 201

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL- 230
           ++ + +    +    L  ++  +         ++  +       PA    +  +      
Sbjct: 202 LEKMIVRARHVEVQILGDSQGGMYHLFERDCSVQRRNQKVVERAPAPYLSEEQRTEICDL 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +        +FL D  S K +++E+N +
Sbjct: 262 GRKICAHVNYECAGTVEFLMDMDSGKFYFIEVNPR 296


>gi|163745749|ref|ZP_02153109.1| carbamoyl-phosphate synthase large subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161382567|gb|EDQ06976.1| carbamoyl-phosphate synthase large subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 1119

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL++ G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALKEEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFGVEMIGAKREAIEMAEDRKLFRDAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                         +  P +I+P       G  V    +         
Sbjct: 149 VTAPKRADGKKDLAAGVNLALEALEYVGLPAIIRPAFTMGGTGGGVAYNREDYEFFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPMGQILVDESLLGWKEFEMEVVRDTADNAIIVCAIENIDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 108/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 586 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDAGYETIMVNCNPETVSTDYDTSD 638

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L+   IP   +      
Sbjct: 639 RLYFEPLTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKLANGLQEAGIPILGTTPDMID 698

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V + G+    +     +   M+    I  P VI+P        + +++ 
Sbjct: 699 LAEDRERFQQLVLNLGLKQPHNGIAHSDAEAMEIAKEIGFPLVIRPSYVLGGRAMEIVRD 758

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             S+   +  +   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 759 QASLERYITNAVVVSGDSPVLLDSYLSGAVELDVDALCDGKDVHVAGIMQHIEEAG---V 815

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P +I  EV++       A+   G+    F       +++ +E+N +
Sbjct: 816 HSGDSACSLPPYSLPREIIAEVEKQTRALALALNVVGLMNIQFAV--KDGEIYLIEVNPR 873

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 874 ASRT----VPFVAKAT 885


>gi|156146826|gb|ABU53425.1| D-alanylalanine synthetase [Streptococcus oralis]
          Length = 147

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELLQALELAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PA+I  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPARISEDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|261210420|ref|ZP_05924714.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC341]
 gi|260840478|gb|EEX67044.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. RC341]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EDLRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|237708300|ref|ZP_04538781.1| pyruvate carboxylase subunit A [Bacteroides sp. 9_1_42FAA]
 gi|265757066|ref|ZP_06090928.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_33FAA]
 gi|229457521|gb|EEO63242.1| pyruvate carboxylase subunit A [Bacteroides sp. 9_1_42FAA]
 gi|263233565|gb|EEZ19194.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_1_33FAA]
          Length = 419

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 64  CNAIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 123

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 124 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRQEMGEKAVAAARAVN 183

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 184 YSGAGTIEFLVD-KNRDFYFLEMNTR 208


>gi|254171886|ref|ZP_04878562.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus sp.
           AM4]
 gi|214033782|gb|EEB74608.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus sp.
           AM4]
          Length = 430

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 84/288 (29%), Gaps = 28/288 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYASAPAMQVAHRSYVSDMRNADFLFSVIEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFELEKDGYFVVPNAKATWIAMHRERTRETLAKEAKVPT-SRYAYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
           ++   I  P   K +   S  G   +K  + IP     +     G  D++++E+++D   
Sbjct: 147 EACEKIGYPCHTKAIMSSSGKGSYFVKGPEDIPKAWEVAKKKARGSADKIIVEEHIDFDV 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +      +  E+         +  +      +   PA+I     +EV R+A     
Sbjct: 207 EVTELAVRHYDENGEVVTTFPKPVGHY-QIDGDYHSSWQPAEILERAEREVYRIAKRITD 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 266 VLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|313140790|ref|ZP_07802983.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
 gi|313133300|gb|EFR50917.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
          Length = 639

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E       +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 82  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 141

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQ 165
                +       H    P ++K   GG   GI V+  D  +    +   +       + 
Sbjct: 142 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYMNHDAMQGGDLDEY 201

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +       +      D   D T  +           K         LP     ++  
Sbjct: 202 FIEKFIDKARHVETQCGRDRFGDFTVYSTRDCSVQRRNQKLVEEAPAPFLPD----EVIN 257

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +      +   G+   +F+  P  RKV++LE+N +
Sbjct: 258 QLETYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNPR 296


>gi|302866818|ref|YP_003835455.1| carbamoyl-phosphate synthase large subunit [Micromonospora
           aurantiaca ATCC 27029]
 gi|302569677|gb|ADL45879.1| carbamoyl-phosphate synthase, large subunit [Micromonospora
           aurantiaca ATCC 27029]
          Length = 1115

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 45/311 (14%), Positives = 92/311 (29%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVV-----------S 101
            L G    +         +LE   +    + I A     D+   K++V            
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIEAINRGEDRQLFKEIVAKAGVRLGLDDP 148

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           S  VP            ++   +  P VI+P      LG  +   D+ +        + +
Sbjct: 149 SALVPRSRVCHSMDEVRETVAELGLPVVIRPSFTMGGLGSGMAHTDEDLERIAGSGLAAS 208

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVTVAPSMTLTDR 268

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +       +  +     G     F  +P   ++  +E+N  P ++  S     +   
Sbjct: 269 EYQRLRDLGIAVLREVGVDTGGCNIQFAVNPADGRIVVIEMN--PRVSRSS--ALASKAT 324

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 325 GFPIAKIAAKL 335


>gi|224283638|ref|ZP_03646960.1| JadJ [Bifidobacterium bifidum NCIMB 41171]
 gi|310288101|ref|YP_003939360.1| acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum S17]
 gi|309252038|gb|ADO53786.1| Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum S17]
          Length = 636

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E       +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 79  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 138

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQ 165
                +       H    P ++K   GG   GI V+  D  +    +   +       + 
Sbjct: 139 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYMNHDAMQGGDLDEY 198

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +       +      D   D T  +           K         LP     ++  
Sbjct: 199 FIEKFIDKARHVETQCGRDRFGDFTVYSTRDCSVQRRNQKLVEEAPAPFLPD----EVIN 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +      +   G+   +F+  P  RKV++LE+N +
Sbjct: 255 QLETYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNPR 293


>gi|188533641|ref|YP_001907438.1| phosphoribosylglycinamide formyltransferase 2 [Erwinia tasmaniensis
           Et1/99]
 gi|254788770|sp|B2VJA4|PURT_ERWT9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|188028683|emb|CAO96545.1| Phosphoribosylglycinamide formyltransferase 2 [Erwinia tasmaniensis
           Et1/99]
          Length = 392

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++A  KPD     +
Sbjct: 24  GKEVALECQRLGVEVIAVDRYADAPAMQVAHRSHVIDMLDGAALAALIADEKPDFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVELEKQGQHVVPTARAAKLTMDREGIRRLAAEELWVPT-SDYRFADGYDAFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I++   +        +   G        V+G+   
Sbjct: 143 AAAEAIGFPCIVKPVMSSSGKGQSFIREASQLMAA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     +  +++A     A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQHMSELALQRARQVAEKVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVVFSEVSPRPHDTGM 289


>gi|51892329|ref|YP_075020.1| biotin carboxylase [Symbiobacterium thermophilum IAM 14863]
 gi|51856018|dbj|BAD40176.1| biotin carboxylase [Symbiobacterium thermophilum IAM 14863]
          Length = 449

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   GI +      +   L +++S     + +    + +    G 
Sbjct: 148 AEEIGYPVMVKATAGGGGRGIRIANSPDELVQALQKAASEAGAAFGNAAVFVEKYIQVGR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD   ++  +   +        K         LP     +  + ++     A 
Sbjct: 208 HIEVQVLGDQHGNIIHLGERECSIQRRRQKMLEEAPAPFLPE----ETRQRIREAGVRAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G       + ++D ++ + ++LE+N +
Sbjct: 264 RAVGYDNAGTVEMIYDEMTGEFYFLEMNTR 293


>gi|163737752|ref|ZP_02145169.1| carbamoyl-phosphate synthase, large subunit [Phaeobacter
           gallaeciensis BS107]
 gi|161389278|gb|EDQ13630.1| carbamoyl-phosphate synthase large chain [Phaeobacter gallaeciensis
           BS107]
          Length = 1119

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 94/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L   ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLAKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VNRFTMDSQH---------------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +     D+ +                I  P +I+P       G  V    +         
Sbjct: 149 ITAPKKDNGNADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENIDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 105/303 (34%), Gaps = 48/303 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDAGYETIMINCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 634 RLYFEPLTFEHVMEILTKELENGTLHGVIVQFGGQTPLKLANALEEEGIPILGTSPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQALVNQLGLKQPHNGIASTDAQALEIAEEIGFPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 754 MDQLKRYIAEAVVVSGDSPVLLDSYLSGAVELDVDAICDGTEVHVAGIMQHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL-SRK--VFWLEI 262
           +S  ++  + P  +  ++  EV+       +A+   G+    F   P    K  ++ +E+
Sbjct: 811 HSGDSACSLPPYSLSKEVIAEVKTQTNALAKALNVVGLMNIQFAVKPDADGKDVIYLIEV 870

Query: 263 NVQ 265
           N +
Sbjct: 871 NPR 873


>gi|163742942|ref|ZP_02150326.1| carbamoyl-phosphate synthase large subunit [Phaeobacter
           gallaeciensis 2.10]
 gi|161383906|gb|EDQ08291.1| carbamoyl-phosphate synthase large subunit [Phaeobacter
           gallaeciensis 2.10]
          Length = 1119

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 94/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L   ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALEEMGVLAKFDVEMIGAKREAIEMAEDRKLFREAMDRLGLENPRATI 148

Query: 113 VNRFTMDSQH---------------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +     D+ +                I  P +I+P       G  V    +         
Sbjct: 149 ITAPKKDNGNADLDAGVQMALDELEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDTADNAIIVCSIENIDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQMMRSASIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 49/303 (16%), Positives = 105/303 (34%), Gaps = 48/303 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   I         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDAGYETIMINCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 634 RLYFEPLTFEHVMEILTKELENGTLHGVIVQFGGQTPLKLANALEEEGIPILGTSPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQALVNQLGLKQPHNGIASTDAQALEIAEEIGFPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 754 MDQLRRYIAEAVVVSGDSPVLLDSYLSGAVELDVDAICDGTEVHVAGIMQHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK---VFWLEI 262
           +S  ++  + P  +  ++  EV+       +A+   G+    F   P +     ++ +E+
Sbjct: 811 HSGDSACSLPPYSLSKEVIAEVKTQTNALAKALNVVGLMNIQFAVKPDTDGKDVIYLIEV 870

Query: 263 NVQ 265
           N +
Sbjct: 871 NPR 873


>gi|73667157|ref|YP_303173.1| carbamoyl-phosphate synthase subunit L [Ehrlichia canis str. Jake]
 gi|72394298|gb|AAZ68575.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain,
           N- terminal:Biotincarboxylase,C-terminal [Ehrlichia
           canis str. Jake]
          Length = 656

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 39/267 (14%), Positives = 89/267 (33%), Gaps = 18/267 (6%)

Query: 14  VSLSSGKACAS--ALEDAGFKVSQIDVDRSVGLVLAHLKP-DLAFNV----LH---GNFG 63
           VS+ S     S   L     +   I         L   K  ++A N     +H   G   
Sbjct: 29  VSVYSSADVYSLHVLSAE--EAVNIGPAPVNQSYLNMEKICEVAHNAGVDAVHPGYGFLS 86

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---- 119
           E+      L+   I +      +  +  DK+ SK++  S  V + P  +    ++D    
Sbjct: 87  ENAEFPEKLQEYNIQFIGPSPSSIRMMADKITSKKIAESAQVNIIPGYMGIVDSVDEAKS 146

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ ++K  + +      +++    +      +++      
Sbjct: 147 IARSIGFPVMIKATAGGGGKGMRIVKSCEEMDQAFTSATNEAAKNFKDGRIFIEKYIELP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAI 238
             +    +      +         ++  +       P+    +  ++          + +
Sbjct: 207 RHIEIQIIADKYGNIVCLGERECSIQRHNQKVIEETPSPFLNEETRQKMYQQCVNLAKKV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +F+ D  +R+ ++LE+N +
Sbjct: 267 GYYSAGTIEFIVD-QNRQFYFLEMNTR 292


>gi|320107251|ref|YP_004182841.1| acetyl-CoA carboxylase, biotin carboxylase [Terriglobus saanensis
           SP1PR4]
 gi|319925772|gb|ADV82847.1| acetyl-CoA carboxylase, biotin carboxylase [Terriglobus saanensis
           SP1PR4]
          Length = 457

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 52/147 (35%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   G+ + +    +P    Q+S          + Y++      
Sbjct: 147 WAKSVGYPVILKAVAGGGGRGMRICRNKDELPGLYNQASQEALNAFGNGDLYMEKFIERP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
             +    L      V         ++          P+ ++  ++ K++  +   + + I
Sbjct: 207 RHIEFQVLADEHGNVMSLGERECSIQRRHQKLIEEAPSLQVSPELRKKLGGVIEKSLKEI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D     ++++E+N +
Sbjct: 267 GYWNAGTIEFLMDE-DGSIYFIEMNTR 292


>gi|260770655|ref|ZP_05879586.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio furnissii CIP
           102972]
 gi|260614381|gb|EEX39569.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio furnissii CIP
           102972]
 gi|315178393|gb|ADT85307.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio furnissii
           NCTC 11218]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAKGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVNAISMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   + +          ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHVEVQVLADGQGSAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|254454350|ref|ZP_05067787.1| pyruvate carboxylase [Octadecabacter antarcticus 238]
 gi|198268756|gb|EDY93026.1| pyruvate carboxylase [Octadecabacter antarcticus 238]
          Length = 1147

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+  I  +  +   +L+            E Y++ + +    +   
Sbjct: 156 YPLMLKASWGGGGRGMRAIMDESELEEKVLEGRREADAAFGNSEGYLEKMIIKARHVEVQ 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIGCRGIS 244
            L  +  A+         ++  +       PA       +E          + +      
Sbjct: 216 ILGDSHGAIYHLWERDCSVQRRNQKVVERAPAPYLSGTQREQICALGKKICEHVNYECAG 275

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL D  S + F++E+N +
Sbjct: 276 TVEFLMDMDSGEFFFIEVNPR 296


>gi|327483166|gb|AEA77573.1| Biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           LMA3894-4]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|298292331|ref|YP_003694270.1| carbamoyl-phosphate synthase, large subunit [Starkeya novella DSM
           506]
 gi|296928842|gb|ADH89651.1| carbamoyl-phosphate synthase, large subunit [Starkeya novella DSM
           506]
          Length = 1111

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/307 (11%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG      L+  G++V  +         D D +    +  + P++               
Sbjct: 29  SGTQACKTLKAEGYRVVLVNSNPATIMTDPDLADATYIEPITPEIVAKIIAKERHAVPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G              +L+  ++    +   A   + D+   +  ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKMGVLDEYDVEMIGATAEAIDKAEDRELFRDAMTKIGLDT 148

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +       +    +  P +I+P      LG  +          + +    +  ++
Sbjct: 149 PRSRQIKTLPQALEALDEVGLPAIIRPSFTMGGLGGGIAYNKSEYIEIIERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ V G +     +     D   I     +     +      +          +  +
Sbjct: 209 VLVEESVLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQR 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAIDPETGRMIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAARL 331


>gi|221108184|ref|XP_002162620.1| PREDICTED: similar to Methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha), partial [Hydra magnipapillata]
          Length = 619

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 52/151 (34%), Gaps = 10/151 (6%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P ++K ++GG   G+ ++         L  + +     +   + L+ +     
Sbjct: 319 QALKIGYPVMLKAVRGGGGKGMRIVTNPSDFETSLQSARNESLKAFGDSNMLIEQFIKKP 378

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V  D   +   +            +             +  +I K++   A  A
Sbjct: 379 RHVEVQVFADKYGNTVYLFERDCSVQ----RRHQKIIEEAPAPHMSEEIRKKLGDAAVKA 434

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A+G  G    +F+FD      +++E+N +
Sbjct: 435 AKAVGYVGAGTVEFIFDEEGN-FYFMEMNTR 464



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +I K++   A  A +A+G  G    +F+FD      +++E+N +
Sbjct: 38  PHMSEEIRKKLGDAAVKAAKAVGYVGAGTVEFIFDEEGN-FYFMEMNTR 85


>gi|317403174|gb|EFV83698.1| biotin carboxylase [Achromobacter xylosoxidans C54]
          Length = 462

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 29/182 (15%), Positives = 59/182 (32%), Gaps = 17/182 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI V   +  +   +  + +           Y++      
Sbjct: 157 HAAQIGYPLMIKASAGGGGRGIRVAADEAQLREAIPMAQAEARAAFGDGGVYLERYLPRA 216

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +             +   + + +   A    +++G
Sbjct: 217 RHIEVQVLGDGERAVHLFERECSLQRRRQKVFEEAPSPALSPALRQALCESALRLTESVG 276

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++L+D    + +++E+N       P +T         A  G    +L+  M+ 
Sbjct: 277 YRGAGTLEYLYDETRGEFYFIEMNTRIQVEHP-ITE--------AITGI---DLVREMLR 324

Query: 295 DA 296
            A
Sbjct: 325 IA 326


>gi|114771040|ref|ZP_01448480.1| Propionyl-CoA carboxylase alpha subunit [alpha proteobacterium
           HTCC2255]
 gi|114548322|gb|EAU51208.1| Propionyl-CoA carboxylase alpha subunit [alpha proteobacterium
           HTCC2255]
          Length = 627

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 75/259 (28%), Gaps = 28/259 (10%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E       L    I +    + A     DK+ SK++     V   P  +
Sbjct: 76  NAVHPGYGFLSERAEFCERLAAENIIFVGPPVKAIEAMGDKITSKKIAQDANVSTVPGHM 135

Query: 113 VNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                        + I  P +IK   GG   G+ +   D+       +S S         
Sbjct: 136 GLIDDAQHAVAISNKIGYPVMIKASAGGGGKGMRIAWNDEEALEGFARSKSEAASSFGDD 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             +++   +    +    L                ++  +       P+    +  +   
Sbjct: 196 RIFIEKFIVEPRHIEIQVLADQHGNCVYLGERECSIQRRNQKVIEEAPSPFLDEKTRAAM 255

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------A 281
              +    QA+G       +F+ D      ++LE+N +              +       
Sbjct: 256 GEQSCALAQAVGYTSAGTVEFIVDKERN-FYFLEMNTR----------LQVEHPVTELIT 304

Query: 282 GYSFRELLLWMVEDASCLR 300
           G    +L+  M+  A+  +
Sbjct: 305 GI---DLVEQMIRVATGEK 320


>gi|212711335|ref|ZP_03319463.1| hypothetical protein PROVALCAL_02407 [Providencia alcalifaciens DSM
           30120]
 gi|212686064|gb|EEB45592.1| hypothetical protein PROVALCAL_02407 [Providencia alcalifaciens DSM
           30120]
          Length = 426

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++A  KPD     +
Sbjct: 58  GKEVAIECQRLGIEVIAVDRYDNAPAMHVAHRSYTLNMLDGDALRQLVASEKPDFIVPEI 117

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   LV    +  ++  + + +  +       R               +       
Sbjct: 118 E-AIATKTLVDLERQGQKVVPSANAVYLTMNREGIRRLAAEELQLPTSEYRFVETKADFE 176

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H I  P ++KP+   S  G  VI+  + +       +    G +    + +    + 
Sbjct: 177 AAAHEIGFPCIVKPVMSSSGKGQSVIRSAEQLDSA---WNYSQEGGRTGQGRVIVEKMVN 233

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                          V       +  +          P  +     K+ Q +A     A+
Sbjct: 234 FDFEITLLTINAVDGVHFCAPVGHR-QEKGDYRESWQPQTMSDVALKKAQDVAKKIVTAL 292

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        ++ + E++ +P   GM
Sbjct: 293 GGYGLFGVELFVC--GDEIIFNEVSPRPHDTGM 323


>gi|124010164|ref|ZP_01694822.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
 gi|123983812|gb|EAY24229.1| methylcrotonoyl-CoA carboxylase alpha chain [Microscilla marina
           ATCC 23134]
          Length = 664

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 38/236 (16%), Positives = 86/236 (36%), Gaps = 16/236 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V A  + D      +G   E+       +   + +      A      K  +K +
Sbjct: 64  EKLLAVCAQHQVDAVHPG-YGFLSENAEFARKCQAAGVIFIGPRAEAIEAMGSKSNAKTI 122

Query: 100 VSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +    VPV P       +      + H I  P ++K   GG   G+ ++   + +   + 
Sbjct: 123 MKQNEVPVIPGYQGADQSTETLSQAAHDIGFPVLLKATAGGGGKGMRIVHTAKELNGAID 182

Query: 156 Q-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSL 209
                  +++ + + ++ +    G  +   ++GD    V  I     +    Y+      
Sbjct: 183 AAKREAQNAFGNDELIIEKYIASGRHIEFQILGDQHGKVVHILERECTIQRRYQKVIEES 242

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S  + P     ++ +++   A  A QA+        +F+FD  S++ ++LE+N +
Sbjct: 243 PSPVLTP-----ELRQKMGEAALKAAQALNYDNAGTVEFIFDDQSQQFYFLEVNTR 293


>gi|15640323|ref|NP_229950.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           O1 biovar El Tor str. N16961]
 gi|147673889|ref|YP_001218566.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           O395]
 gi|153822830|ref|ZP_01975497.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae B33]
 gi|153827375|ref|ZP_01980042.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-2]
 gi|227080509|ref|YP_002809060.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae M66-2]
 gi|229506907|ref|ZP_04396415.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae BX
           330286]
 gi|229509280|ref|ZP_04398763.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae B33]
 gi|229512696|ref|ZP_04402164.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TMA
           21]
 gi|229516224|ref|ZP_04405672.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC9]
 gi|229527209|ref|ZP_04416602.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           12129(1)]
 gi|229606420|ref|YP_002877068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MJ-1236]
 gi|254286233|ref|ZP_04961192.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae
           AM-19226]
 gi|254851430|ref|ZP_05240780.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MO10]
 gi|262161986|ref|ZP_06031003.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae INDRE
           91/1]
 gi|262167983|ref|ZP_06035682.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC27]
 gi|262192557|ref|ZP_06050707.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae CT
           5369-93]
 gi|297581757|ref|ZP_06943679.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           RC385]
 gi|298500927|ref|ZP_07010729.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MAK
           757]
 gi|9654706|gb|AAF93469.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|126519648|gb|EAZ76871.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae B33]
 gi|146315772|gb|ABQ20311.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O395]
 gi|149738705|gb|EDM53047.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-2]
 gi|150423648|gb|EDN15590.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae
           AM-19226]
 gi|227008397|gb|ACP04609.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae M66-2]
 gi|227012154|gb|ACP08364.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae O395]
 gi|229335217|gb|EEO00701.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           12129(1)]
 gi|229346650|gb|EEO11620.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC9]
 gi|229350206|gb|EEO15158.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae TMA
           21]
 gi|229353595|gb|EEO18532.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae B33]
 gi|229356012|gb|EEO20931.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae BX
           330286]
 gi|229369075|gb|ACQ59498.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae
           MJ-1236]
 gi|254847135|gb|EET25549.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           MO10]
 gi|262023516|gb|EEY42218.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae RC27]
 gi|262028364|gb|EEY47020.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae INDRE
           91/1]
 gi|262031602|gb|EEY50190.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio cholerae CT
           5369-93]
 gi|297534164|gb|EFH73003.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio cholerae
           RC385]
 gi|297540431|gb|EFH76490.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MAK
           757]
          Length = 447

 Score = 53.0 bits (125), Expect = 5e-05,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPAKSIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGNAIHLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|260427676|ref|ZP_05781655.1| acetyl-CoA carboxylase, biotin carboxylase [Citreicella sp. SE45]
 gi|260422168|gb|EEX15419.1| acetyl-CoA carboxylase, biotin carboxylase [Citreicella sp. SE45]
          Length = 451

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     ++E  ++ +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENARFVQMVEDHDLTFIGPSAEHIRVMGDKITAKDTMKALGVPCVPGSDG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               +DS   I      P +IK   GG   G+ V   +  +      + +     + + +
Sbjct: 137 GVPDVDSAKKIGAEFGYPVIIKATAGGGGRGMKVATSEAEMERAFQTARAEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD   +   +            +             I  +  
Sbjct: 197 VYIEKYLQKPRHIEIQVFGDGKGNAVHLGERDCSLQ----RRHQKVFEEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A   +   G    +FL+     + +++E+N +
Sbjct: 253 NRIGATCAKAVADLKYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|157691829|ref|YP_001486291.1| carbamoyl phosphate synthase large subunit [Bacillus pumilus
           SAFR-032]
 gi|157680587|gb|ABV61731.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit
           [Bacillus pumilus SAFR-032]
          Length = 1026

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+KV  ++ +                      SV  ++   KPD    
Sbjct: 29  SGTQGCMALKEEGYKVILVNNNPATIMTDESFADEIYFEPLSVDSVTRIIEKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G    +  V+      L+   +    + +       D+ + + ++      VP    
Sbjct: 89  NLGGQTALNLAVELEKAGVLKKHGVTLLGTSVETIENGEDREKFRALMKQLNEPVPDSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     +  P +++P       G  +   +++    +  +   +   Q L+E+
Sbjct: 149 VDNAQDALQFAKEVGFPVILRPAYTLGGKGGGIALTEEAFKPLIEGALLASPIHQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEVEYEVMRDRQNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDQDYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DPLS++ F +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIISALDVVGGCNIQFALDPLSKEYFVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/274 (14%), Positives = 90/274 (32%), Gaps = 16/274 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     +  V+   + D       G    +         + +  T    L 
Sbjct: 610 DRLYFEPITL---EHILNVVEAEQIDFVIVQFGGQTAINVAEGLEKAGITLLGTSFDTLD 666

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +    D         +       +       +     I  P +I+P      +G++V++ 
Sbjct: 667 ALEDRDLFYQLLDELNLPHAKGDTAHSKEEALTHAKSIGYPVLIRPSYVIGGMGMMVVQS 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   L Q     +   +LI++YV G E+   ++ D          P    +  +   
Sbjct: 727 EAHLTALLDQPDHLPY--PILIDEYVTGKEVEVDLISDGKTTFI----PTIVEHIEKAGV 780

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  +LP+    + I ++V   +    + +  +GI    F+      +   LE+N +
Sbjct: 781 HSGDSFAILPSVSISEDIKQQVHIASEQIAKKLAFKGIMNIQFVI--KGDQALVLEVNPR 838

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
              T     P ++   G     L   ++  A+  
Sbjct: 839 ASRT----VPVVSKVMGIDMIPLATQLLAGATLD 868


>gi|89890796|ref|ZP_01202305.1| carbamoyl-phosphate synthase [Flavobacteria bacterium BBFL7]
 gi|89516941|gb|EAS19599.1| carbamoyl-phosphate synthase [Flavobacteria bacterium BBFL7]
          Length = 950

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 82/260 (31%), Gaps = 13/260 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLERYGIKIMGTSYKALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            +    P   +       +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGLFSKMLQENDIPYPEFATATTPAEALQVAEQLDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   ++        + LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KEELEEHVVDILRKIPNNVLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCG---V 796

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   + ++++        A+   G+    F       KV+ +E N +
Sbjct: 797 HSGDSNALLPPFTLGDLVMQQIKDHTKKIALALDTVGLINIQFAI--KDDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAYAGYSF 285
              T     P +A   G  +
Sbjct: 855 ASRT----VPFIAKAYGEPY 870



 Score = 35.6 bits (80), Expect = 8.6,   Method: Composition-based stats.
 Identities = 30/264 (11%), Positives = 70/264 (26%), Gaps = 28/264 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D               S+  +L    + D   
Sbjct: 29  SGTQALRSLREDGIETILINSNPATIMTDPSMADHVYLLPLNTNSIRKILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E   +      I A  ++ D+ + + ++   GV +    
Sbjct: 89  PTMGGQTALNLCIEAQEKGIWEDHNVDLIGVNIDAINVTEDREQFRNLMGEIGVGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P  I+        G  ++ K++     L +    +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLCIRSSFTLGGAGAAIVYKEEDYDELLTRGLEASPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             K    
Sbjct: 209 KALLGWKEYELELLRDDNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDRTYQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPL 253
              +        G     F   P 
Sbjct: 269 AIHMMRSIGAFAGGCNVQFAVSPD 292


>gi|293611435|ref|ZP_06693730.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292826219|gb|EFF84589.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 646

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/230 (15%), Positives = 71/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E+          +I +      A  L   K  SK  +
Sbjct: 66  KIIDVCKKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAM 124

Query: 101 SSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVP  P    +R  ++        I  P ++K   GG   G+ ++++   +   L  
Sbjct: 125 IEAGVPCVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQT 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S         E  ++   +    +       T             ++          P
Sbjct: 185 ARSEAENAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAP 244

Query: 217 AK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   + +++   A    +A    G    +FL D  S   ++LE+N +
Sbjct: 245 CPVMTPVLRQQMGEAAVDTAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|255037895|ref|YP_003088516.1| acetyl-CoA carboxylase, biotin carboxylase [Dyadobacter fermentans
           DSM 18053]
 gi|254950651|gb|ACT95351.1| acetyl-CoA carboxylase, biotin carboxylase [Dyadobacter fermentans
           DSM 18053]
          Length = 448

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ VI K +        + +     + +    L +   +  
Sbjct: 148 AEGIGYPVIVKATAGGGGRGMRVINKPEEFEKAWNDARTESAAAFGNDGLYLEKFVEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD    V  ++           +             I  ++ + +   A    
Sbjct: 208 HIEIQIIGDQFGKVCHLSERDCSIQ----RRHQKLVEETPSPIITPELRERMGAAAIKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           QAIG  G    +FL D      +++E+N +
Sbjct: 264 QAIGYEGAGTIEFLVDKH-GDFYFMEMNTR 292


>gi|255009597|ref|ZP_05281723.1| carbamyl phosphate synthetase [Bacteroides fragilis 3_1_12]
 gi|313147376|ref|ZP_07809569.1| carbamyl phosphate synthetase [Bacteroides fragilis 3_1_12]
 gi|313136143|gb|EFR53503.1| carbamyl phosphate synthetase [Bacteroides fragilis 3_1_12]
          Length = 1076

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P+    
Sbjct: 28  SGSQALKALKEEGIETILINPNIATVQTSEGVADQIYFLPVTPYFVEKVIQKERPEGIML 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G     + ILE   +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGVALYREGILEKYGVRVLGTPVQAIIDTEDRELFVEKLNEIDVKTIKSEA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      +  +  D+L   ++    Q+L+E+
Sbjct: 148 VENAEDARRAARELGYPVIVRAAYALGGLGSGFCDNEAEL--DVLVEKAFAFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLRGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNKEYHKLREL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|114569815|ref|YP_756495.1| acetyl-CoA carboxylase biotin carboxylase subunit [Maricaulis maris
           MCS10]
 gi|114340277|gb|ABI65557.1| acetyl-CoA carboxylase, biotin carboxylase [Maricaulis maris MCS10]
          Length = 448

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 14/219 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGLAFIGPTAAHIRMMGDKITAKQAVMDAGIPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQL 166
            +      +     I  P +IK   GG   G+ V +   ++   +  +S+      GD  
Sbjct: 137 GVDTYEDAVPIAEKIGYPVLIKAASGGGGRGMKVAETAANLKEAMDTASTEALAAFGDGT 196

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +   G      +   A        V   +      +             +  D  K+
Sbjct: 197 VYIEKYLGRPRHIEIQILADTHG--NVVHLGERDCSLQRRHQKILEEAPSPALNDDDRKK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A +AIG RG+   +FL+   + + +++E+N +
Sbjct: 255 IGDVVRRAIEAIGYRGVGTIEFLW--ENGEFYFIEMNTR 291


>gi|317503276|ref|ZP_07961329.1| carbamoyl-phosphate synthase, large subunit [Prevotella salivae DSM
           15606]
 gi|315665604|gb|EFV05218.1| carbamoyl-phosphate synthase, large subunit [Prevotella salivae DSM
           15606]
          Length = 1074

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGIETVLINPNIATVQTSEGVADHIYFLPIQPYFVERVIQKEQPDGVLL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     I     +    + + A   + D+    + ++   V    S  
Sbjct: 88  SFGGQTALNCGVELEKTGIFAKYGVKVLGTPVAAIMNTEDRELFVEQLNEIDVKTIKSEA 147

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      +  +    L   +++   Q+L+E+
Sbjct: 148 CENVEEARKAASTLGYPVIVRAAYALGGLGSGFADDEAELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDCYDNCVTVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|313149588|ref|ZP_07811781.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           fragilis 3_1_12]
 gi|313138355|gb|EFR55715.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           fragilis 3_1_12]
          Length = 1073

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGINSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q +L+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGVLDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIDMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARRIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKM-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|255011751|ref|ZP_05283877.1| putative carbamoyl-phosphate synthase large chain 2 [Bacteroides
           fragilis 3_1_12]
          Length = 1078

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 32  SGSQALKALKEEGINSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 91

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q +L+   +    + + A   + D+    + ++   +    S  
Sbjct: 92  AFGGQTALNCGAELYTQGVLDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIDMKTPVSQA 151

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 152 VESMEDAIAAARRIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 210 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKM-LQEL 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 269 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 320


>gi|288941622|ref|YP_003443862.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
 gi|298286783|sp|O52058|ACCC_ALLVD RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|288896994|gb|ADC62830.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
          Length = 449

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVL--------------------------AHLK 50
                 A  + G K   +  + DR +  VL                          A + 
Sbjct: 17  ALRILRACRELGIKTVAVHSEADRDLKHVLLADESVCIGPAPAMQSYLNVPAIISAAEVT 76

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   + + GVP  P 
Sbjct: 77  DTVAIHPGYGFLSENADFAERVEKSGFIFIGPRPETIRLMGDKVSAIAAMKAAGVPCVPG 136

Query: 111 ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 137 SDGPIDDNKKRTLELAREIGYPIMIKSSGGGGGRGMRVVHSEATLLNAIALTRAEAAAAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L                ++          PA    +  +
Sbjct: 197 NNDMVYMEKYLENPRHIEFQVLADQMGNAIHLGERDCSMQRRHQKVVEEAPAPGITEEQR 256

Query: 226 EVQRLAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   A  ++IG RG    +FL+   + + +++E+N +
Sbjct: 257 REIGERCAAACRSIGYRGAGTFEFLY--ENGQFYFIEMNTR 295


>gi|311739925|ref|ZP_07713759.1| pyruvate carboxylase [Corynebacterium pseudogenitalium ATCC 33035]
 gi|311304998|gb|EFQ81067.1| pyruvate carboxylase [Corynebacterium pseudogenitalium ATCC 33035]
          Length = 1143

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +       + D  +   +G   E   +    E   I +         L+ DK  
Sbjct: 69  LDIDE-IIRAAKKAEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKAA 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P       +             + P  +K + GG   G+  ++ +  +  
Sbjct: 127 AVSAAKEAGLPTLQDSEPSTDVDKLVEYSKDFNFPVFVKAVAGGGGRGMRFVESEDQLRE 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 187 KAAEASREAEAAFGDGSVYLETAVIKPQHIEVQILADSQGNVIHLFERDCSVQRRHQKVV 246

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     ++   +   A    + I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAPTLDPELRDRICADAVKFCEHINYEGAGTVEFLVDERGNHV-FIEMNPR 299


>gi|321253258|ref|XP_003192680.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Cryptococcus gattii
           WM276]
 gi|317459149|gb|ADV20893.1| Methylcrotonoyl-Coenzyme A carboxylase 1, putative [Cryptococcus
           gattii WM276]
          Length = 734

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/251 (16%), Positives = 82/251 (32%), Gaps = 21/251 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K  D+A       +H   G   E       +    + +    
Sbjct: 115 EAYLIGPSPSSESYLKMDKILDIAKLTGAEAIHPGYGFLSESSDFAEKVRDAGLIFIGPS 174

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSL 139
             A      K  SK+++ + GVP  P       +             P +IKP  GG   
Sbjct: 175 AEAIKSMGSKRESKEIMVAAGVPCVPGYHGADQSQAALLKGSQQTGYPLIIKPTHGGGGK 234

Query: 140 GIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAV 194
           G+ +++        +     ++      D++L+E++++    +   V GD   +   +  
Sbjct: 235 GMRIVRDPSTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQVFGDHFGNCVALWE 294

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                     +             +   + K     A  A +AI   G    +F+ D  +
Sbjct: 295 RDCSVQ----RRHQKIIEEAPAPGLSPALKKGFAEKAVAAAKAINYVGAGTVEFIMDAET 350

Query: 255 RKVFWLEINVQ 265
            + F++E+N +
Sbjct: 351 GEHFFMEMNTR 361


>gi|224026216|ref|ZP_03644582.1| hypothetical protein BACCOPRO_02972 [Bacteroides coprophilus DSM
           18228]
 gi|224019452|gb|EEF77450.1| hypothetical protein BACCOPRO_02972 [Bacteroides coprophilus DSM
           18228]
          Length = 503

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ + +       D      +G   E+       +   I +            DK+ 
Sbjct: 61  LNIDK-IIMAAKRHGADAIHPG-YGFLSENSEFARRCKQEGIIFIGPDPETMDAMGDKIS 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++ + + GVPV P       +++    I      P ++K   GG   G+ +I     + 
Sbjct: 119 ARKHMIAAGVPVVPGTEQPLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHNVDEVE 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L                ++  +   
Sbjct: 179 EAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ +++   A  A +A+  +G    +FL D      ++LE+N +
Sbjct: 239 VEETPSPFVTPELRQKMGEAAVAAAKAVNYKGAGTIEFLVDKHRN-FYFLEMNTR 292


>gi|332880321|ref|ZP_08447999.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332681766|gb|EGJ54685.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 1074

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P     
Sbjct: 28  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPFFVEKVIRKERPQGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G     + ILE   +    + + A   + D+    + +    V    S  
Sbjct: 88  AFGGQTALNCGVALYKEGILEKYGVQVLGTPVQAIIDTEDRELFVKKLDEIDVKTIKSHA 147

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CENMEEARKAAAHLGYPVIIRAAYALGGLGSGFCDNEEELNK--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|297184357|gb|ADI20473.1| pyruvate carboxylase [uncultured alpha proteobacterium
           EB080_L58F04]
          Length = 1150

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   +  P ++K   GG   G+  I     +   +L+            E Y++ +
Sbjct: 146 DIARQAEDVGYPLMLKASWGGGGRGMRPITHPGELEEKVLEGRREAEAAFGNGEGYLEKM 205

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLA 234
            L    +    L   + A+         ++  +       PA    +    E+  L    
Sbjct: 206 ILRARHVEVQILGDKQGAIYHLWERDCSVQRRNQKVVERAPAPYLNEAQRAELCELGRRI 265

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +        +FL D  S K +++E+N +
Sbjct: 266 CAHVNYECAGTVEFLMDMDSGKFYFIEVNPR 296


>gi|254510661|ref|ZP_05122728.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium KLH11]
 gi|221534372|gb|EEE37360.1| carbamoyl-phosphate synthase, large subunit [Rhodobacteraceae
           bacterium KLH11]
          Length = 1114

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFGVEMIGAKRDAIEMAEDRALFREAMDRLGIENPKAEI 148

Query: 113 VNRFTMDSQHL---------------ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     D+                  +  P +I+P       G  V    +         
Sbjct: 149 VTAPKDDTDKKDLEAGVALALDTLETVGLPAIIRPAFTLGGTGGGVAYNREDYIHICRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 MDASPVGQILIDESLLGWKEYEMEVVRDTADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNHSIAVLREIGVETGGSNVQWAINPDDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 111/316 (35%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   I         D D S 
Sbjct: 585 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMINCNPETVSTDYDTSD 637

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 638 RLYFEPLTFEHVMEILTKEQENGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 697

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 698 LAEDRERFQALVNDLGLKQPKNGIASTDEQALEIAGDIGFPLVIRPSYVLGGRAMEIVRD 757

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D +       +   +       
Sbjct: 758 MDQLKRYINEAVVVSGDSPVLLDSYLAGAVELDVDALCDGTDVHVAGIMQHIEEAG---V 814

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I ++++  AF   +A+   G+    F       +++ +E+N +
Sbjct: 815 HSGDSACSLPPYSLSKEIIEQIKDQAFKLAKALNVVGLMNVQFAI--KEDEIYLIEVNPR 872

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 873 ASRT----VPFVAKAT 884


>gi|315608978|ref|ZP_07883950.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae ATCC
           33574]
 gi|315249358|gb|EFU29375.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae ATCC
           33574]
          Length = 1072

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFQPVTTYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L    +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYRSGVLGEYGVEVLGTSVEAIMDTEDRDLFVKKLDEIDLLTPRSRA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +S P +I+       LG  +   +Q+       + ++    Q+L+E+
Sbjct: 147 VENMADALQAARELSFPVMIRSAYALGGLGSGICPDEQTFREVAESAFTFAP--QILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q +
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLAEEQVKMLQDI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     F F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SVRCVRHLGIVGECNIQFAFNAETNDYRIIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|288927104|ref|ZP_06420992.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae D17]
 gi|288336131|gb|EFC74524.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae D17]
          Length = 1072

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFQPVTTYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L    +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYRSGVLGEYGVEVLGTSVEAIMDTEDRDLFVKKLDEIDLLTPRSRA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +S P +I+       LG  +   +Q+       + ++    Q+L+E+
Sbjct: 147 VENMADALQAARELSFPVMIRSAYALGGLGSGICPDEQTFREVAESAFTFAP--QILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q +
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLAEEQVKMLQDI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     F F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SVRCVRHLGIVGECNIQFAFNAETNDYRIIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|225847972|ref|YP_002728135.1| carbamoyl-phosphate synthase large subunit [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225644525|gb|ACN99575.1| carbamoyl-phosphate synthase large chain (Carbamoyl-phosphate
           synthetase ammonia chain) [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 528

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L + G++   +         D D              V  ++   KPD       G
Sbjct: 27  CVWSLREEGYQAIMVNCNPETVSTDYDTSDKLFFEPIVLEDVFNIIEREKPDGVVVQFGG 86

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    +  A   ++ R   +      P           +  
Sbjct: 87  QTPLKLAKPLEKLNVPILGTSPESIDIAEDRERFRDLIISLGLKQPESGIARSKEEALKI 146

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++     +   + ++ +      +LI++++DG   +  
Sbjct: 147 AEEIGYPVLVRPSYVLGGRAMRLVYDTSELLQYIEEAVTVTEDKPILIDKFLDG---SIE 203

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  D   D  ++ V     +  E    S +S   +P      +I  ++++ +    +A+ 
Sbjct: 204 VDVDCVCDGDDVLVGAVMEHIEEAGIHSGDSATCIPHYTLDDEIVVKIKQQSKKLAKALN 263

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G+    +       +++ +E N +   T     P ++   GY   ++
Sbjct: 264 TIGLINIQYAI--KDGEIYVIEANPRASRT----VPFVSKAIGYPLAKI 306


>gi|57235052|ref|YP_180870.1| pyruvate carboxylase subunit A [Dehalococcoides ethenogenes 195]
 gi|57225500|gb|AAW40557.1| acetyl-CoA carboxylase, biotin carboxylase [Dehalococcoides
           ethenogenes 195]
          Length = 498

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 37/281 (13%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
                 A  + G K   +  D                             + +       
Sbjct: 14  AIRIMRACRELGIKTVAVYSDADKGALFVKYADEAYHIGPSQLSESYLNIKKIVSAAKKA 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      LE   I +         L  +K+ +++ +   GVPV P
Sbjct: 74  GVDGVHPG-YGFLSENPGFALALEKAGIKFIGPSSRVIELMGNKIAARREMKKAGVPVLP 132

Query: 110 SILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   ++        I  P +IKP  GG  +G+ V      +   +  S        
Sbjct: 133 GTEGCVSGIEQATEAAAAIGYPVIIKPSGGGGGIGMRVANGPDELKDAIESSQKVAGNTF 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            L E Y++        +    +  ++  V         ++          P   I  ++ 
Sbjct: 193 GLAEVYIEKYISNPRHIEIQIMGDSQGNVVYLGERECSIQRRYQKLIEEAPSPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++  +A  A + +   G    +F+F   + + ++LE N +
Sbjct: 253 KKMGEVAIKAGKWVNYEGAGTIEFIF--SNGQFYFLEANTR 291


>gi|73662984|ref|YP_301765.1| pyruvate carboxylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
 gi|72495499|dbj|BAE18820.1| pyruvate carboxylase [Staphylococcus saprophyticus subsp.
           saprophyticus ATCC 15305]
          Length = 1151

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 76/235 (32%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D++R +  V      D      +G   E+       +   I +    +    +  DK++
Sbjct: 64  LDIER-IIDVAKRADVDAIHPG-YGFLSENETFARRCQEEGIKFIGPRVEHLDMFGDKVK 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    +  + V P     I      +   +    P +IK   GG   G+ +++ +  + 
Sbjct: 122 ARTTAINADLRVIPGTDGPIDNQEDAIAFANEAGYPLMIKATSGGGGKGMRIVQSEDELE 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E Y++        +    +      +         ++      
Sbjct: 182 DAFHRAKSEAEKSFGNSEVYIEKYIDNPKHIEVQVIGDEHGNIVHLYERDCSVQRRHQKV 241

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P+     D+ + +   A    + I        +FL      + +++E+N +
Sbjct: 242 VEVAPSVALSDDLRERICEAAIQLMENIEYVNAGTVEFLV--SGEEFYFIEVNPR 294


>gi|148559300|ref|YP_001259109.1| propionyl-CoA carboxylase subunit alpha [Brucella ovis ATCC 25840]
 gi|148370557|gb|ABQ60536.1| propionyl-CoA carboxylase, alpha subunit [Brucella ovis ATCC 25840]
          Length = 667

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    ++ ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEVTRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|156743296|ref|YP_001433425.1| carbamoyl-phosphate synthase large subunit [Roseiflexus
           castenholzii DSM 13941]
 gi|156234624|gb|ABU59407.1| carbamoyl-phosphate synthase, large subunit [Roseiflexus
           castenholzii DSM 13941]
          Length = 1112

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 42/298 (14%), Positives = 94/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   GF+V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGVQACKVLRREGFRVVLVNSNPATIMTDPQMADATYIEPLTPEIVEKIIERERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  +    + +L+   +    +   A AL+ D+   K+ +   G+ V     
Sbjct: 89  TVGGQTGLNLAMKLAERGVLDRYGVQLIGASPKAIALAEDRELFKRAMIDAGLRVPLGET 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++P       G  V   +  +     +    +   Q+LIEQ
Sbjct: 149 VSTVDQALEAAARIGYPVLVRPSFTLGGSGGGVAYSEAQLREIADRGLRASPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +    +D   +     +     +      +          +  +  +  
Sbjct: 209 SVLGWKEYELEVMRDRMDNFVVVCSIENLDPMGVHTGDSITIAPTMTLTDREYQRLREMA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +        G S   F  DP       +E+N  P ++  S     +   G+   ++
Sbjct: 269 KIVIRTVGVETGGSNIQFAVDPRDGTPLVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 90/295 (30%), Gaps = 40/295 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILE 73
           AL D G++   I         D D S  L    L  +   NV        +      +  
Sbjct: 598 ALRDLGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLNVWENESGMRDGRAGTPVPM 657

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSS-------------------CGVPVCPSILVN 114
           L++        LA  L+   +                              P        
Sbjct: 658 LVQFGGQTPLNLAKGLAAAGVPIWGTSQDSIDLAEDRGRFSELLRQLDMMQPESGMAADL 717

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VD 173
           +        I  P +++P        + +   D+ +   + +++  + G  +LI++Y  D
Sbjct: 718 QTARRVAQRIGYPVLVRPSYVLGGRAMAIAYDDEGLAQYIHEATQISAGQPVLIDRYLED 777

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             EL    +GD    V    +   +       +S  ++  + P K+       ++     
Sbjct: 778 AFELDVDAVGDGERVVIGGIMEHIEEAG---VHSGDSAMVMPPFKVSAYHLSIIRDETIR 834

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +A+  +G+    F       +V+ LE+N +   T     P +A   G     L
Sbjct: 835 IGEALRVKGLMNIQFAI--KDDEVYVLEVNPRASRT----VPFVAKATGVPLARL 883


>gi|90581286|ref|ZP_01237083.1| acetyl-CoA carboxylase [Vibrio angustum S14]
 gi|90437525|gb|EAS62719.1| acetyl-CoA carboxylase [Vibrio angustum S14]
          Length = 447

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESVCIGPARGIDSYLNIPRIISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ ++ +   +  +       +
Sbjct: 134 SDGPLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRSEEELTEAIAMTRAEAKSCF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACLEINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|224025962|ref|ZP_03644328.1| hypothetical protein BACCOPRO_02713 [Bacteroides coprophilus DSM
           18228]
 gi|224019198|gb|EEF77196.1| hypothetical protein BACCOPRO_02713 [Bacteroides coprophilus DSM
           18228]
          Length = 1074

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIRSVLVNPNIATIQTSEGIADQVYFQPVTPYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYQKGILQEYGVQVLGTSVEAIMYTEDRDLFVKKLDEIQLKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   I  P +I+       LG  +   ++      L  S++    Q+L+E+
Sbjct: 147 VENMQDALAAARRIGYPVMIRSAYALGGLGSGICPNEEKFIE--LAESAFTFSPQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q+L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQQL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SIQCIRHLGIVGECNIQYAFNAETNDYRIIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|198452396|ref|XP_001358754.2| GA15253 [Drosophila pseudoobscura pseudoobscura]
 gi|198131915|gb|EAL27897.2| GA15253 [Drosophila pseudoobscura pseudoobscura]
          Length = 702

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + ++ +     L  + + +          ++    +  
Sbjct: 176 AKIIGFPLMIKAVRGGGGKGMRIAERPEDFLTALNSARNESQKSFGDSSVLLERYVRSPR 235

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 236 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 295

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 296 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 345

Query: 297 S 297
           +
Sbjct: 346 A 346


>gi|168186112|ref|ZP_02620747.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           C str. Eklund]
 gi|169295903|gb|EDS78036.1| carbamoyl-phosphate synthase, large subunit [Clostridium botulinum
           C str. Eklund]
          Length = 1063

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ++++ G +   ++ +                      +V  ++   KP+    
Sbjct: 29  SGTQACKSIKEEGIETVLVNSNPATIMTDLNIADKVYIEPLKIEAVEKIIEREKPNGILA 88

Query: 57  VLHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  ++           +++   +   +  A   ++ +   +     +P    
Sbjct: 89  GFGGQTALNIAMELQEKGVLERNNVKLLGINGESIKKAEDREEFKELMLEIGEPIPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +              P +I+P       G  + +  +            +   Q+L+EQ
Sbjct: 149 AVNMEECKAFVKRHGLPIIIRPAYTLGGTGGGIAETMEQYLDICELGLKMSPIHQILLEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G                 I +   +       ++  +        +    ++ ++  
Sbjct: 209 SVAGW-KELEYEVIRDKKDNCIIICNMENIDPVGVHTGDSIVVAPSQTLTDKEHQMLRNS 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +++   G     F  DP+S K   +E+N  P ++  S     +  AGY   ++  
Sbjct: 268 ALKIIRSLKIEGGCNIQFALDPISNKYIVIEVN--PRVSRSS--ALASKAAGYPIAKIAS 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 96/282 (34%), Gaps = 30/282 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFN----------VLHGNFGED 65
           A+ +AG++   +         D D S  L    L  D   N          +L       
Sbjct: 580 AINNAGYESIMVNNNPETVSTDFDTSDKLYFESLFIDDVMNVIRKENPKGVILQFGGQTS 639

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
             +   L    +    +   +  L+ D+ + ++++    +       +            
Sbjct: 640 VNLAEKLSQRGVNILGTKFESIDLAEDREKFRELLEELNIKTPTGNAVTSIEEAHKVVEK 699

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P        + VI  D+++   + ++ S +    +++++YV G E+    + 
Sbjct: 700 LGYPVIVRPSYVIGGRAMEVIYDDKALEKYMKEAVSLSSEHTIIVDKYVRGTEIEVDAIC 759

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D    +    +   +       +S  + T      +  D  KE+ +       A+   G+
Sbjct: 760 DGEDILMPGIMEHIERTG---VHSGDSITVYPYMTLSEDTIKELVKNTKKIATALKIVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
               ++FD     ++ +E+N +   T     P ++   G   
Sbjct: 817 VNIQYVFDGKD--IYVIEVNPRASRT----VPILSKVTGVPM 852


>gi|259015993|gb|ACV89279.1| putative CAD trifunctional protein [Mongoloraphidia martynovae]
          Length = 669

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       +  V+   +PD    
Sbjct: 81  SGSQAIKALKEENIQTVLVNPNIATVQTSKGLADKVYFLPLVPEYIEQVIRSERPDGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I          + I +   + D+     +    +  V    +
Sbjct: 141 TFGGQTALNCGVELERANIFNKYNCRILGTPIKSIIETEDRRIFSERINEINEKVAPSEA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG       + +    L   ++ H  QL+I++
Sbjct: 201 VSSIDEALKAAERLRYPVMARAAFSLGGLGSGFANNKEELIN--LAQQAFAHSTQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDANDNCITVCNMENVDPLGIHTGESIVVAPSQTLNNREYNLLRTT 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|218526202|gb|ACK86508.1| carbamoyl-phosphate synthase [Mongoloraphidia martynovae]
          Length = 723

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       +  V+   +PD    
Sbjct: 132 SGSQAIKALKEENIQTVLVNPNIATVQTSKGLADKVYFLPLVPEYIEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I          + I +   + D+     +    +  V    +
Sbjct: 192 TFGGQTALNCGVELERANIFNKYNCRILGTPIKSIIETEDRRIFSERINEINEKVAPSEA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG       + +    L   ++ H  QL+I++
Sbjct: 252 VSSIDEALKAAERLRYPVMARAAFSLGGLGSGFANNKEELIN--LAQQAFAHSTQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDANDNCITVCNMENVDPLGIHTGESIVVAPSQTLNNREYNLLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|326405203|ref|YP_004285285.1| urea carboxylase [Acidiphilium multivorum AIU301]
 gi|325052065|dbj|BAJ82403.1| urea carboxylase [Acidiphilium multivorum AIU301]
          Length = 1162

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 56/179 (31%), Gaps = 16/179 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+     +  +       S     +      Y++        + 
Sbjct: 155 IGYPVMLKSTAGGGGIGMAPCADEAELRARFAGISRLAQANFGEAALYLEKFVTAARHVE 214

Query: 184 DASLDVTEIAVPKSDFYSYE-LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                     V           + +        P  IP  +   ++  A    +++    
Sbjct: 215 VQIFGDGAGGVIALGARDCSLQRRNQKVVEETPPPGIPAPVLAAMEDAACGLARSVRYLS 274

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D  +   ++LE+N +     G+T            G    +L+ WMV  A+
Sbjct: 275 AGTVEFIYDAATEGFYFLEVNTRLQVEHGVTE--------EVFGI---DLVEWMVRAAA 322


>gi|304314250|ref|YP_003849397.1| pyruvate carboxylase, subunit A [Methanothermobacter marburgensis
           str. Marburg]
 gi|302587709|gb|ADL58084.1| pyruvate carboxylase, subunit A [Methanothermobacter marburgensis
           str. Marburg]
          Length = 491

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 80/280 (28%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAH-----------------LKPDLAFN----- 56
                 A  + G K   +  +     +                    L+ D   +     
Sbjct: 14  AIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPSPSQSYLRIDRIIDVAEES 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
               +H   G   E+  +    E   I              DK+ SK+++   GVP    
Sbjct: 74  GAEAIHPGYGFLAENPGLGEECEKHGIKLIGPKSSVIEAMGDKITSKKLMKKAGVPVIPG 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +       +    I  P +IK   GG  +G+  + ++  +   +  + S       
Sbjct: 134 TDKGVSDPDEAAEIADSIGYPVIIKASAGGGGIGMRTVYEEDELIRAMESTQSVAASAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               Y++        +    +      V         ++          P   +  ++ +
Sbjct: 194 DPTVYIEKYLEKPRHIEFQVMADEHGNVIHLADRECSIQRRHQKLVEEAPSPIMTPELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A  A + IG       +FL+   +   ++LE+N +
Sbjct: 254 RMGSAAVKAAEYIGYENAGTVEFLY--SNGDFYFLEMNTR 291


>gi|209552354|ref|YP_002284269.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539466|gb|ACI59398.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1179

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ +      +                    Y++       
Sbjct: 147 AETVGYPVMLKSTAGGGGIGMQLCANAAGLTASFESVQRTARASFGDARVYIERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA     +    + + A     ++ 
Sbjct: 207 HVEVQIFGDGKGRVIALGERDCSLQRRNQKVVEETPAPGLSAETRARLHKAAVDLGSSVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP   + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPQREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|2766041|emb|CAB16982.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766087|emb|CAB17005.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766131|emb|CAB17027.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821397|emb|CAA13265.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
 gi|148711407|gb|ABR02130.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711421|gb|ABR02137.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711423|gb|ABR02138.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711431|gb|ABR02142.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711465|gb|ABR02159.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711591|gb|ABR02222.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
 gi|148711741|gb|ABR02297.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISRSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|161170217|gb|ABX59188.1| carbamoyl phosphate synthetase ammonia large chain [uncultured
           marine group II euryarchaeote EF100_57A08]
          Length = 1122

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 92/303 (30%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL   G+++  I+ +                       V  +L   KPD    
Sbjct: 29  SGSQACRALRADGYEIILINSNPATIQNDPEMADRIYIEPLLPEVVKRILEIEKPDALLA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          L+ LE+      +++   + D+   KQV    G+PVC +I 
Sbjct: 89  GMGGQTALNIASALAHDGSLDELEVELIGCDLVSIDEAEDRDLFKQVCEEIGLPVCKAIA 148

Query: 113 VNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +           L   P +I+P      LG         +     Q    +   Q+LIE
Sbjct: 149 CDTIEAVIAAAETLGGFPLLIRPAFTLGGLGGGTAHNMGELVEIASQGILHSAIGQVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             + G +     +     D   I     +     +                 D ++ ++ 
Sbjct: 209 VSILGWQEHEYEVMRDGADNAIIVCTMENIDPMGVHTGESVVVAPQQTLSDRD-HQMLRD 267

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    + +  +G     F  +  +     +E+N  P ++  S     +   GY    + 
Sbjct: 268 AALRLIRRLNIKGGCNVQFAVEQSTGDYRVIEVN--PRVSRSS--ALASKATGYPIARMA 323

Query: 290 LWM 292
             +
Sbjct: 324 ALI 326



 Score = 40.6 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 25/170 (14%), Positives = 56/170 (32%), Gaps = 9/170 (5%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +I+P       G+ ++  D+ +   + ++        L+ E   +  EL    +
Sbjct: 755 QIGYPVLIRPSYVLGGRGMEILSNDRQLAAYMQEAFLSPDRPLLVDEYLGNATELDVDAV 814

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D S  +    +   +           ++  + P  +   I  +V+         +G  G
Sbjct: 815 CDGSEVLIGAIMEHLEEAGIHSG---DSTCFIPPQNVSKKILAQVEDWTRKIGIELGVVG 871

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +        ++ LE+N +   T    FP +A   G     +   +
Sbjct: 872 CFNIQYAI--RGETLYVLEVNPRGSRT----FPFVAKATGVPLARIAARL 915


>gi|111224607|ref|YP_715401.1| carbamoyl phosphate synthase pyrimidine specific large subunit
           [Frankia alni ACN14a]
 gi|111152139|emb|CAJ63867.1| carbamoyl phosphate synthase, pyrimidin specific large subunit
           [Frankia alni ACN14a]
          Length = 1261

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 83/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVG-LVLAHLKPDLAFN 56
           SG      L   G +V  ++                    +   +   ++   +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPELADATYVEPITPDIVTKIIERERPDAVLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + I A     D+   K +V++ G     S +
Sbjct: 89  TMGGQTALNTAVALHDAGVLDRYGVRLIGANIDAIRAGEDRQAFKDIVAAVGGETARSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +            + P V++P       G         +        S +   ++L+E+
Sbjct: 149 CHTVEECLAAGEEFAYPVVVRPSFTLGGAGSGFAHDPAELTRMAADGLSASPSTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +        
Sbjct: 209 SILGWKEFELELMRDRADNVVVVCSIENVDPMGVHTGDSITVAPAMTLTDREYQTMRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMRAVGVDAGGCNIQFAVDPATGRQVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|5019381|emb|CAB44435.1| carbamoylphosphate synthase (large subunit) [Klebsiella aerogenes]
          Length = 481

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNFG 63
           AL + G++   +         D D S  L    +  +    ++H            G   
Sbjct: 12  ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVHIEKPKGVIVQYGGQTP 71

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 72  LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 131

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +      + S ++   +L+++++D  IE+    +
Sbjct: 132 IGYPLVVRPSYVLGGRAMEIVYDEQDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 191

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D  + +    +   +       +S  ++  +    +  +I   ++         +  RG
Sbjct: 192 CDGEMVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMREQVQKLAFELQVRG 248

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 249 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 291


>gi|91782528|ref|YP_557734.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           xenovorans LB400]
 gi|123063079|sp|Q142Q7|PURT_BURXL RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|91686482|gb|ABE29682.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia xenovorans LB400]
          Length = 404

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++        L E+  T      +       R                       
Sbjct: 87  EAIATDELAAIESAGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRGDADVEPAWQYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAINPASGEVSTYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|183585304|gb|ACC63966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|183585306|gb|ACC63967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 27/109 (24%), Positives = 49/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  ++  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L        + LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--RDNIPYVLEVNTLPGMTK 131


>gi|170589405|ref|XP_001899464.1| Carboxyl transferase domain containing protein [Brugia malayi]
 gi|158593677|gb|EDP32272.1| Carboxyl transferase domain containing protein [Brugia malayi]
          Length = 2132

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 5/159 (3%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
           C         +  +  I+ P +IK  +GG   GI +++ +    ++  +  +   G  + 
Sbjct: 233 CVYDHEEAIRVMKEKKITYPVMIKASEGGGGKGIRLVRSESDFEVNFRRVQAEVAGGHIF 292

Query: 168 IEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +   ++G   +   ++GD   +V  +            K          P      + + 
Sbjct: 293 LMHCLEGARHIEVQLLGDMYGEVIALRTRDCTVQRRCQKIIEEAPAIAAPL----AVQRN 348

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  A    + +G       ++LF P + + F+LE+N +
Sbjct: 349 MEADAVRLAKMVGYVSAGTVEYLFVPQTNEYFFLELNPR 387


>gi|6434087|emb|CAB60640.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634597|emb|CAB64489.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALELAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDR-GEIFLNE 146


>gi|2766005|emb|CAB16964.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766011|emb|CAB16967.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766081|emb|CAB17002.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|2766129|emb|CAB17026.1| D-alanine:D-alanine ligase [Streptococcus pneumoniae]
 gi|3821403|emb|CAA13268.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLVYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G++ +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNSDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|259506599|ref|ZP_05749501.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
 gi|259165797|gb|EEW50351.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
          Length = 1139

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +      +K D  +   +G   E+  +        I +         L+ DK +
Sbjct: 72  LDIDE-IINAAKKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSK 129

Query: 96  SKQVVSSCGVP---VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P              + S    + P  +K + GG   G+  ++K + +  
Sbjct: 130 AVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVEKPEDLRE 189

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L      V         L+       
Sbjct: 190 LAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYERDCSLQRRHQKVV 249

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    ++   +   A    ++IG +G    +FL D     V ++E+N +
Sbjct: 250 EIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHV-FIEMNPR 302


>gi|154486668|ref|ZP_02028075.1| hypothetical protein BIFADO_00488 [Bifidobacterium adolescentis
           L2-32]
 gi|154084531|gb|EDN83576.1| hypothetical protein BIFADO_00488 [Bifidobacterium adolescentis
           L2-32]
          Length = 661

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V +
Sbjct: 96  LIDILQRSGADAVHPG-YGFLSEVASFAQKVLDAGATWVGPNPKALVDLGDKITARRVAT 154

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI ++  D  +    +  
Sbjct: 155 FAKVPPVPGISQSISDMRLLLDFAHTHGYPLMLKRTDGGGGRGITLVHNDDELRGFYMNH 214

Query: 158 SSWNH---GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +       +  +      G  +      D+  + T  +           + +       
Sbjct: 215 DALQGGDLDEYFVERFIDKGRHVETQCGRDSHGNFTVYSTRDCSVQ----RRNQKLVEEA 270

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   + ++++  +    +A+   G+   +F+      KV++LE+N +
Sbjct: 271 PAPFLSDGVLEQLETYSRRLFEAVDYIGLGTCEFMVTEQ-GKVYFLEVNPR 320


>gi|108763738|ref|YP_631585.1| carbamoyl phosphate synthase large subunit [Myxococcus xanthus DK
           1622]
 gi|122981062|sp|Q1D6Y8|CARB_MYXXD RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|108467618|gb|ABF92803.1| carbamoyl-phosphate synthase, large subunit [Myxococcus xanthus DK
           1622]
          Length = 1083

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL D G +V  ++ +                      +   +LA  +PD    
Sbjct: 29  SGTQAIKALRDEGVEVVLLNSNPATVMTDPEFAHRTYIEPITVEAAERILASERPDSLLP 88

Query: 57  VLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV----PVCPS 110
            + G         +     L +      G    A++  + R     +   +    P    
Sbjct: 89  TMGGQTALNLAKALAEQGILEKYGVRLIGASLDAINKAEDRQLFKAAMQKIGVALPKSGY 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  M     I  P +I+P       G  +    +            +    +L+E+
Sbjct: 149 ATTLDQAMSLVEDIGFPAIIRPSFTLGGTGGGIAYNREEFETICRSGLKASPTTTILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +     +      +          +  +  Q  
Sbjct: 209 SVLGWKEYELEVVRDTADNVIIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRMRQAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P   ++  +E+N  P ++  S     +   GY   ++  
Sbjct: 269 LAIIREIGVETGGSNIQFGINPKDGRMVVIEMN--PRVSRSS--ALASKATGYPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 41.8 bits (96), Expect = 0.14,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 88/285 (30%), Gaps = 28/285 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL +AG++   +         D D              V  V    KP  A     G   
Sbjct: 588 ALREAGYETVMVNCNPETVSTDYDTSDRLYFEPLTIEDVLEVSQREKPVGAIVQFGGQTP 647

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V      L I  T    +  A   ++  +         P       +         
Sbjct: 648 LRISVPLEKAGLPILGTSPDAIDRAEDRERFAALIEKLGLKQPENGVARSHAEAFKVAER 707

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +++P        +  +    S+   + ++ S +    +LI++++    +   +  
Sbjct: 708 IGYPVMVRPSYVLGGRAMETVYDVASLERYMREAVSASPEHPVLIDRFLK-EAIEVDLDL 766

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A      +     +       +S   +  + P  +  D+ + ++  A    + +G  G+
Sbjct: 767 VADRTGAVMIGGVLEHIQEAGVHSGDAAATLPPHSLSPDLVERMKDQAIALARELGVVGL 826

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
               F      + ++ LE+N +   T     P ++   G +  ++
Sbjct: 827 MNVQFAI--QGKTIYILEVNPRASRT----VPFISKATGVAMAKI 865


>gi|25027265|ref|NP_737319.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
 gi|23492546|dbj|BAC17519.1| pyruvate carboxylase [Corynebacterium efficiens YS-314]
          Length = 1168

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +      +K D  +   +G   E+  +        I +         L+ DK +
Sbjct: 101 LDIDE-IINAAKKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSK 158

Query: 96  SKQVVSSCGVP---VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P              + S    + P  +K + GG   G+  ++K + +  
Sbjct: 159 AVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVEKPEDLRE 218

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L      V         L+       
Sbjct: 219 LAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYERDCSLQRRHQKVV 278

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    ++   +   A    ++IG +G    +FL D     V ++E+N +
Sbjct: 279 EIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHV-FIEMNPR 331


>gi|20126704|dbj|BAB88903.1| pyruvate carboxylase [Corynebacterium efficiens]
          Length = 1139

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 78/234 (33%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +      +K D  +   +G   E+  +        I +         L+ DK +
Sbjct: 72  LDIDE-IINAAKKVKADAVYPG-YGFLSENAQLARECAENGITFIGPTPEVLDLTGDKSK 129

Query: 96  SKQVVSSCGVP---VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P              + S    + P  +K + GG   G+  ++K + +  
Sbjct: 130 AVSAAKKAGLPVLAESTPSTDIDEIVKSAEGQTYPIFVKAVAGGGGRGMRFVEKPEDLRE 189

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L      V         L+       
Sbjct: 190 LAREASREAEAAFGDGSVYVERAVIKPQHIEVQILGDHTGDVIHLYERDCSLQRRHQKVV 249

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    ++   +   A    ++IG +G    +FL D     V ++E+N +
Sbjct: 250 EIAPAQHLDPELRDRICADAVKFCKSIGYQGAGTVEFLVDEAGNHV-FIEMNPR 302


>gi|298209127|ref|YP_003717306.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Croceibacter atlanticus HTCC2559]
 gi|83849054|gb|EAP86923.1| carbamoyl-phosphate synthase, large (or ammonia) subunit (carB)
           [Croceibacter atlanticus HTCC2559]
          Length = 950

 Score = 53.0 bits (125), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 91/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGTQALRSLREDGIETILINSNPATIMTDPSMADHVYLKPLTTKSIIQILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E  ++      I A  ++ D+ + ++++   GVP+    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFDVKIIGVNIDAINITEDREKFRELMIDIGVPMAPQK 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P +I+        G   + K++     L +    +   +++I+
Sbjct: 149 TATSYLQGKEIAQEFGFPLIIRSSFTLGGAGASFVYKEEDFDEMLTRGLEASPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     +   I     +  +  +      +             K    
Sbjct: 209 KALIGWKEYELELLRDHNNNVVIICTIENMDAIGIHTGDSITVAPAMTLSDKTFQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P   + +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRSIGDFAGGCNVQFAVSPDENEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328



 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/260 (13%), Positives = 81/260 (31%), Gaps = 13/260 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRYGIKIMGTTYQALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            ++   P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSKLLQENNIPYPEFDVAETADEALAVADKLDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            Q +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KQELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F       KV+ +E N +
Sbjct: 800 ---DSNATLPPFNLGDLVLEQIKDHTKKIALALNTVGLINIQFAV--KEDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAYAGYSF 285
              T     P +A   G  +
Sbjct: 855 ASRT----VPFIAKAYGEPY 870


>gi|332978187|gb|EGK14919.1| pyruvate carboxylase [Desmospora sp. 8437]
          Length = 1148

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  V      D      +G   E+           I +         +  DK+ 
Sbjct: 64  LDI-EGIIDVAKRHDVDAIHPG-YGFLSENAEFANRCREEGIVFIGPSPEQIQMFGDKVD 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++++    G+PV P       ++            P +IK   GG   G+ +++  + + 
Sbjct: 122 AREMAVKAGIPVIPGTPEPIDSLAEAIRFGETHGYPMIIKAASGGGGRGMRIVRSPEELE 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             + ++ S         E Y++        +    L   +  +         ++      
Sbjct: 182 EAVDRARSEAKSAFGNAEVYIEKYLENPRHIEVQILADEQGNMVHLFERDCSIQRRHQKV 241

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P+   P ++   +   A       G       +FL  P   + +++E+N +
Sbjct: 242 VEVAPSVSLPEELRNRICEAALQLMTTAGYTNAGTVEFLVTP-DHRFYFIEVNPR 295


>gi|260886550|ref|ZP_05897813.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Selenomonas
           sputigena ATCC 35185]
 gi|330839612|ref|YP_004414192.1| Biotin carboxylase [Selenomonas sputigena ATCC 35185]
 gi|260863693|gb|EEX78193.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Selenomonas
           sputigena ATCC 35185]
 gi|329747376|gb|AEC00733.1| Biotin carboxylase [Selenomonas sputigena ATCC 35185]
          Length = 468

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 86/277 (31%), Gaps = 40/277 (14%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHL--------------------------KPD 52
              A ++ G +   I  D D++ + + LA L                          K D
Sbjct: 17  VIRACQELGVEAVAIYSDADKNALHVQLADLTYRVGPADATESYLNKEAVLEAAIQTKSD 76

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                 +G   ED     ++    I +         L  DK  ++  ++  G+P+     
Sbjct: 77  AIHPG-YGFLSEDADFAEMVTKAGIVWIGPMPETLRLVGDKDAARAAMAPSGIPMSKGSA 135

Query: 113 VNRFTMDS---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                  +      +  P ++KP+ GG   G+ V   ++ +   L         D   + 
Sbjct: 136 PLENNEMALKAAAEVGYPVILKPVSGGGGKGMFVAHSEEDLKNILQLV------DLKKVV 189

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            Y +        +    L      V         L+  +       P+    +  +    
Sbjct: 190 HYFEHYIEHSRHIEAQILADNYGTVLFLGERECSLQRRNQKLLEESPSVALTEEMRREIG 249

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           RLA  A +++        +FL D    K +++EIN +
Sbjct: 250 RLAIKAAKSVHYSNAGTVEFLLDLADNKFYFMEINPR 286


>gi|254509950|ref|ZP_05122017.1| biotin carboxylase [Rhodobacteraceae bacterium KLH11]
 gi|221533661|gb|EEE36649.1| biotin carboxylase [Rhodobacteraceae bacterium KLH11]
          Length = 461

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +IK   GG   GI +    +       Q+++           Y++ +     
Sbjct: 149 AHQIGFPVMIKATAGGGGRGIRIAHTAEEFAQLAPQAATEAEAAFGDGGLYLEKLIARSR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L      V   +      +             +  +   E+   A     ++G 
Sbjct: 209 HIEVQILGDGTRFVHCHERECSLQRRRQKVWEEAPATSLSDETRAELCDAAVALAASVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    +FL+D  S + +++E+N +
Sbjct: 269 RGAGTVEFLYDEASGEFYFIEMNTR 293


>gi|53715319|ref|YP_101311.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           fragilis YCH46]
 gi|60683252|ref|YP_213396.1| putative carbamoyl-phosphate synthase large chain 2 [Bacteroides
           fragilis NCTC 9343]
 gi|253567209|ref|ZP_04844659.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           3_2_5]
 gi|265767805|ref|ZP_06095337.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_16]
 gi|52218184|dbj|BAD50777.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           fragilis YCH46]
 gi|60494686|emb|CAH09487.1| putative carbamoyl-phosphate synthase large chain 2 [Bacteroides
           fragilis NCTC 9343]
 gi|251944040|gb|EES84559.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           3_2_5]
 gi|263252477|gb|EEZ24005.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_16]
 gi|301164771|emb|CBW24330.1| putative carbamoyl-phosphate synthase large chain 2 [Bacteroides
           fragilis 638R]
          Length = 1073

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGINSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTKGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPISQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARRIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKM-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|304311609|ref|YP_003811207.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [gamma
           proteobacterium HdN1]
 gi|301797342|emb|CBL45562.1| Phosphoribosylaminoimidazole carboxylase, ATPase subunit [gamma
           proteobacterium HdN1]
          Length = 695

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 81/233 (34%), Gaps = 14/233 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +      +K D      +G   E   +  +     I +    + + A    K+ +KQ+  
Sbjct: 68  ILDAAKKVKADAIHPG-YGFLSESTQLITLCNESGIAFVGPSVESIAAMGSKIEAKQIAQ 126

Query: 102 SCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +P  P                  I  P +IK   GG   G+ ++++    P  L  +
Sbjct: 127 QLEIPTIPGYNGADQSPTNLQREAEAIGFPVLIKASAGGGGKGMRIVRQSSEFPSALATA 186

Query: 158 SS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                  +     LL +       +   ++GD   +V  +   +        K       
Sbjct: 187 KQEALNSFGDDRVLLEKYLTRPRHIEVQLLGDRHGNVVHLFDRECSIQRNYQKVIEEAPA 246

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             LPA    ++ +++   A    + +  +G    +F++D  +++ ++LE+N +
Sbjct: 247 SQLPA----EVRQQLWDCATRLGRYLNYQGAGTVEFIYDSEAQRAYFLEMNTR 295


>gi|326792120|ref|YP_004309941.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium lentocellum
           DSM 5427]
 gi|326542884|gb|ADZ84743.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium lentocellum
           DSM 5427]
          Length = 456

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/254 (18%), Positives = 88/254 (34%), Gaps = 26/254 (10%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH   G   E+     I E   I +         L  DK ++++++ + GVPV P    
Sbjct: 77  ALHPGFGFLSENAKFAEICEKCGITFIGPTGEMIRLMGDKAKAREMMIAAGVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      M     I  P ++K   GG   G+ ++ K +      L +SS          
Sbjct: 137 KIDDLEEAMCLADRIGYPVILKAAAGGGGRGMRIVWKKEEFEKAFLSASSEAENAFGDGS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         L+          P+     D+ K + 
Sbjct: 197 MYLEKYIQNPRHIEFQILSDAYGNVVHLGERDCSLQRRHQKVMEEAPSPFLNNDMRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
            +A  A +A+  +     +F+ D  S + +++E+N       P +T +          G 
Sbjct: 257 EIAVTAAKAVNYQNAGTIEFIVDA-SGEFYFIEMNTRIQVEHP-ITEI--------VTGI 306

Query: 284 SFRELLLWMVEDAS 297
              +L+   ++ A+
Sbjct: 307 ---DLIKAQIKIAA 317


>gi|296156096|ref|ZP_06838935.1| urea carboxylase [Burkholderia sp. Ch1-1]
 gi|295893602|gb|EFG73381.1| urea carboxylase [Burkholderia sp. Ch1-1]
          Length = 1205

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 57/183 (31%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +       +     +      Y++       
Sbjct: 148 ADSIGYPVMLKSTAGGGGIGMSLCRDAAQLESVFASVARLGEANFANAGVYLEKFVENAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +          +V         ++  +       PA          +   A    QA+ 
Sbjct: 208 HIEVQIFGDGRGSVIALGERDCSVQRRNQKVIEETPAPGLTHAERSALHASAVRLAQAVK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YKSAGTVEFVFDADTRRFYFLEVNTR----------LQVEHCVTEEVTGI---DLVEWMI 314

Query: 294 EDA 296
            +A
Sbjct: 315 REA 317


>gi|114704667|ref|ZP_01437575.1| acetyl-CoA carboxylase [Fulvimarina pelagi HTCC2506]
 gi|114539452|gb|EAU42572.1| acetyl-CoA carboxylase [Fulvimarina pelagi HTCC2506]
          Length = 448

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 24/153 (15%), Positives = 53/153 (34%), Gaps = 11/153 (7%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYV 172
           M     I  P ++K   GG   G+ + + ++ +P  L  + S     +      + +   
Sbjct: 145 MKIAKDIGFPVLVKASAGGGGRGMKIARTEKELPHALATARSEAGAAFGDDAVYIEKYLE 204

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               +   V GD + +   +            K     ++  L  +    I         
Sbjct: 205 KPRHIEVQVFGDGAGNAIHLGERDCSLQRRNQKVWEEANSPALKPQQREKIGTICA---- 260

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + +  RG    +FL+   + + F++E+N +
Sbjct: 261 EAMKGLQYRGAGTIEFLY--ENGEFFFIEMNTR 291


>gi|325283577|ref|YP_004256118.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           proteolyticus MRP]
 gi|324315386|gb|ADY26501.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           proteolyticus MRP]
          Length = 445

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 1/145 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G  VI+ D+ +     Q+              ++       
Sbjct: 147 AREIGYPVLLKASAGGGGRGQKVIRSDEEMQKGFSQAQEEARLYFGDPAIIMEKFLEEFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +   +  V         ++  +       P+ +P D+ +E+        + +  
Sbjct: 207 HVEVQVMGDGQGHVIHIGERDCSIQRRNQKLIEEAPSTLPDDLRQEILAAGVRLAKHVNY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+ D      +++E+N +
Sbjct: 267 AGAGTLEFIVD-RDGNYYFMEMNTR 290


>gi|281420836|ref|ZP_06251835.1| carbamoyl-phosphate synthase, large subunit [Prevotella copri DSM
           18205]
 gi|281405128|gb|EFB35808.1| carbamoyl-phosphate synthase, large subunit [Prevotella copri DSM
           18205]
          Length = 1077

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   KPD    
Sbjct: 28  SGSQALKALREEGIETVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIQKEKPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +   Q ILE   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELYRQGILEKYNVKVLGTPVQAIMDTEDRELFVEKLDEINVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CENIEQARKAAAELGYPVIIRAAYALGGLGSGFADNEEELNK--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|89075349|ref|ZP_01161771.1| acetyl-CoA carboxylase [Photobacterium sp. SKA34]
 gi|89048898|gb|EAR54467.1| acetyl-CoA carboxylase [Photobacterium sp. SKA34]
          Length = 447

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 83/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESVCIGPARGIDSYLNIPRIISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ ++ +   +  +       +
Sbjct: 134 SDGPLDDDEAKNKSFAKRIGYPVIIKASGGGGGRGMRVVRSEEELTEAIAMTRAEAKSCF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACLEINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|207093264|ref|ZP_03241051.1| carbamoyl phosphate synthase large subunit [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 282

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 30/272 (11%), Positives = 80/272 (29%), Gaps = 25/272 (9%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G      L+  G++V  I+ +                      ++  ++   K D     
Sbjct: 1   GTQSCKTLKSLGYRVILINSNPATVMTDPEFSHQTYIQPITPENIAAIIKKEKIDAILPT 60

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC----PSILV 113
           + G    + ++Q   + +       G    A+   + R     +   + +          
Sbjct: 61  MGGQTALNAVMQMHQKGMLEGVELLGAKIEAIKKGEDRQAFKEAMLKIGMDLPKGRYAYS 120

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +++ + I  P +I+     +  G  V    +        +   +  +++LIE+ + 
Sbjct: 121 ELEALEAINEIGFPAIIRASFTLAGGGSGVAYNIEEFQELAKNALDASPINEILIEESLL 180

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G +     +   S D   I     +     +      +          +  +       +
Sbjct: 181 GWKEYEMEVIRDSKDNCIIVCCIENIDPMGVHTGDSITIAPSLTLTDKEYQRMRDASFAI 240

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     G S   F   P + ++  +E+N +
Sbjct: 241 LREIGVDTGGSNVQFAIHPKTLRMVVIEMNPR 272


>gi|192289987|ref|YP_001990592.1| urea carboxylase [Rhodopseudomonas palustris TIE-1]
 gi|192283736|gb|ACF00117.1| urea carboxylase [Rhodopseudomonas palustris TIE-1]
          Length = 1182

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   + ++                    Y++       
Sbjct: 147 AGRIRFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARVYLERFVADAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D  +  + + A    Q++ 
Sbjct: 207 HIEVQIFGDGQGNVIALGERDCSLQRRNQKVVEETPAPGISDEMRARLHQAAVALGQSVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D    + ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YESAGTVEFIYDVARDEFYFLEVNTRLQVEHP-VTE--------AVFGV---DLVEWMVR 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 QAAGD 319


>gi|167522641|ref|XP_001745658.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163776007|gb|EDQ89629.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1210

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 51/290 (17%), Positives = 96/290 (33%), Gaps = 32/290 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGE----DGLVQAILELLEIPYTHSGILASALSM 91
           +D   ++        P   FN+    +      +  + A++++  IPYT +G +   L  
Sbjct: 71  LDTHATLLERFKSQPPAFIFNLCDEGYNNVNEWEPYLPALMDMHGIPYTGTGAIGLTLCR 130

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSL---GIIV 143
           DK     V  +  + V  S +              H+ + P ++KP  G  S       +
Sbjct: 131 DKWLVDSVAKALNIAVPFSHVFEPNHQTVNEFIETHVFTFPVIVKPRCGDGSTGITSTCI 190

Query: 144 IKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIELTCGVMGDASL-----------DVT 190
               Q +   L             +L++Q++ G E+T   +G+              D T
Sbjct: 191 CNSTQELAAHLEDLGRQEELASLAMLVQQFLAGREITVACLGNPDSGDFRVLPILELDYT 250

Query: 191 EIAVPKSDFYSYELKYSSLNSTH----VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
           ++         Y+ K             + A+        ++        A+  +  +R 
Sbjct: 251 KLPPDAPKIQLYDAKRGMAPEFWEQVAHIHAQFDDATQALIEDHCAKIFDALSLQDYARI 310

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           DF FD  S     L++N    +     F      AG  +  LL  +V  A
Sbjct: 311 DFRFD-DSGTPHLLDVNPNCWI--GGKFRRAGQLAGLEWPHLLESVVRAA 357


>gi|224536172|ref|ZP_03676711.1| hypothetical protein BACCELL_01038 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522212|gb|EEF91317.1| hypothetical protein BACCELL_01038 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 1072

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGISSVLVNPNIATIQTSEGIADQVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L    +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTSGVLAKYGVRVLGTSVEAIMYTEDRDLFVKKLDEINMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  + +  +      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAAERIGFPVMVRSAYALGGLGSGICQDKEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|157164344|ref|YP_001467578.1| biotin carboxylase [Campylobacter concisus 13826]
 gi|112801126|gb|EAT98470.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter concisus
           13826]
          Length = 443

 Score = 52.6 bits (124), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 44/219 (20%), Positives = 82/219 (37%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I    +I +    + A AL  DK ++KQV+   GVPV P  
Sbjct: 77  DAIFPG-YGFLSENQNFVEICSHHKIKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +   +   +    I  P ++K   GG   G+ V++K+  +      + S        
Sbjct: 136 DGAVADTKAAKELAKKIGYPVILKAAAGGGGRGMRVVEKEADLEKAFWSAESEAMSAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
              Y++   L    +    +  +   V         ++          PA +  +   + 
Sbjct: 196 GTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQKLIEESPAILLDEKTRER 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +AIG  G    +FL D  +   +++E+N +
Sbjct: 256 LHETAIKAAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR 293


>gi|307177464|gb|EFN66591.1| Methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Camponotus floridanus]
          Length = 705

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 73/247 (29%), Gaps = 13/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN-----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +S    L   K            +H   G   E+     + +   I +    
Sbjct: 76  EAYCIGPAQSNQSYLRQDKIISVVKQAKCQAVHPGYGFLSENTEFAELCQRENIIFIGPP 135

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSL 139
             A      K  SK ++   GVP+         T          I  P +IK ++GG   
Sbjct: 136 ASAIRDMGIKNTSKAIMMKAGVPIIEGYHEKDQTSETLLIEARKIGFPLMIKAVRGGGGK 195

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +  K+      L  + + +          ++        +                 
Sbjct: 196 GMRIALKESDFIEALESARTESEKAFGDSAVLLEKYVAKPRHVEVQIFADKYENAVYLFE 255

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P   I   + +E+   A  A +A+G  G    +F+ D  S    
Sbjct: 256 RDCSVQRRHQKVIEEAPAPNISQKLRQELGEAAVRAAKAVGYVGAGTVEFIMDQNSHSFH 315

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 316 FMEMNTR 322


>gi|293192821|ref|ZP_06609716.1| carbamoyl-phosphate synthase, large subunit [Actinomyces
           odontolyticus F0309]
 gi|292820068|gb|EFF79066.1| carbamoyl-phosphate synthase, large subunit [Actinomyces
           odontolyticus F0309]
          Length = 1099

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 83/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACRVLKEEGLRVILVNSNPATIMTDPGIADATYVEPITPEVVASIIEKERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +       +       +E+       + +    ++ +     S   V     
Sbjct: 89  TLGGQTALNTAVALSEMGVLERFNVELIGASIDAIRAGEDREEFKEIVERSGAEVARSFI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P      LG         +     Q  + +   ++L+E+
Sbjct: 149 AHTMEECHAAAAELGYPLVVRPSFTMGGLGSGFAYTPDDLERIAGQGLAASITTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++ +     
Sbjct: 209 SILGWKEYELELMRDKADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDREMQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIRAVGVDTGGCNIQFAIHPETGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|293607215|ref|ZP_06689556.1| urea carboxylase [Achromobacter piechaudii ATCC 43553]
 gi|292814307|gb|EFF73447.1| urea carboxylase [Achromobacter piechaudii ATCC 43553]
          Length = 1215

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 18/184 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+   + +  + +                  +++      
Sbjct: 146 QAERIGYPVMLKSTAGGGGIGLSRCENEAELTVAFDSVQRMGEHFFRDGGAFIERYVDNA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
             +           V         ++  +       P   +P      +   A    +++
Sbjct: 206 RHVEVQIFGDGAGRVLALGERDCSVQRRNQKVIEETPAPLLPAATRAALLAAAVQLGESV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R     +F++DP     ++LE+N       P +T         A  G    +L+  M+
Sbjct: 266 NYRSAGTVEFIYDPARDSFYFLEVNTRLQVEHP-VTE--------AVTGL---DLVECML 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RVAA 317


>gi|256829970|ref|YP_003158698.1| ATP-grasp protein-like protein [Desulfomicrobium baculatum DSM
           4028]
 gi|256579146|gb|ACU90282.1| ATP-grasp protein-like protein [Desulfomicrobium baculatum DSM
           4028]
          Length = 390

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 86/272 (31%), Gaps = 30/272 (11%)

Query: 19  GKACASA--LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
           G+   ++  L++A F          +  ++   K D+   VL   +        +   + 
Sbjct: 47  GRHVYASPFLDEARF-------VEDLLRIIDKEKIDVLIPVLEETYFVARHRAVLAPHVR 99

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH-LISPPYVIKPLKG 135
           I       L S    DK   K +    GV +  ++ +              P V+KP +G
Sbjct: 100 IFMAQYTDLIS--LHDKRSLKNIAERLGVSMPLTVELEDAMTSGLPSDFHFPAVLKPKQG 157

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           G    ++ +    ++    +        ++ L+++ ++G      ++      V   +  
Sbjct: 158 GGGWSVMEVHDMTALRG--MTEQFDVLPERYLVQEKIEGPIAGVAMLYRDGALVAADSY- 214

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                       +    +  P       + +           +   G  ++DFL D +  
Sbjct: 215 --------WTVQTYPHPYGQPTVRVSRDFPDATAAMKTILDDLRWTGPCQADFLHDEVRG 266

Query: 256 KVFWLEINVQ-PGMTPVSIFPEMAAYAGYSFR 286
           K F +++N +  G    SI        G  F 
Sbjct: 267 KSFLIDVNPRFWGSVGQSI------ARGIDFP 292


>gi|146310256|ref|YP_001175330.1| carbamoyl phosphate synthase large subunit [Enterobacter sp. 638]
 gi|145317132|gb|ABP59279.1| carbamoyl-phosphate synthase large subunit [Enterobacter sp. 638]
          Length = 1028

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 84/280 (30%), Gaps = 21/280 (7%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGIL 85
             + I+      V  ++   +PD     + G        +   Q +L    +    +   
Sbjct: 16  DATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLAEFGVTMIGATAD 75

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
           A   + D+ R    +   G+    S         +     +  P +I+P       G  +
Sbjct: 76  AIDKAEDRRRFDVAMKKIGLDTARSGIAHNMEEALAVAADVGYPCIIRPSFTMGGTGGGI 135

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               +       +    +   +LLI++ + G +     +     D   I     +F +  
Sbjct: 136 AYNREEFEEICERGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMG 195

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +          +          +  +     G S   F  +P + ++  +E+N
Sbjct: 196 IHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN 255

Query: 264 VQPGMTPVS-------IFPE---MAA-YAGYSFRELLLWM 292
             P ++  S        FP     A    GY+  EL+  +
Sbjct: 256 --PRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDI 293



 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 542 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 601

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 602 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQKAVDRLKLKQPANATVTAIEMAVEKAKE 661

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 662 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 718

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 719 DAICDGETVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 778

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 779 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 821


>gi|126733316|ref|ZP_01749063.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp. CCS2]
 gi|126716182|gb|EBA13046.1| carbamoyl-phosphate synthase, large subunit [Roseobacter sp. CCS2]
          Length = 1109

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/314 (11%), Positives = 93/314 (29%), Gaps = 43/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++    PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKECPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALADMGVLDKFNVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VNRFTMDSQH--------------LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V    +D +                I  P +I+P       G  V    +          
Sbjct: 149 VTAPEVDGKQDLDTGVKIALDALEDIGLPAIIRPAFTLGGTGGGVAYNREEYEHFCRTGM 208

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +   Q+L+++ + G +     +     D   I     +     +      +       
Sbjct: 209 DASPVGQILVDESLLGWKEFEMEVVRDRADNAIIVCAIENVDPMGVHTGDSITVAPALTL 268

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
              +          +  +     G S   +  +P   ++  +E+N  P ++  S     +
Sbjct: 269 TDKEYQIMRTHSINVLREIGVETGGSNVQWAVNPDDGRMVVIEMN--PRVSRSS--ALAS 324

Query: 279 AYAGYSFRELLLWM 292
              G+   ++   +
Sbjct: 325 KATGFPIAKIAAKL 338



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 576 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDQGYETIMINCNPETVSTDYDTSD 628

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   +  
Sbjct: 629 RLYFEPLTFEHVMEILRVEQDNGTLHGVIVQFGGQTPLKLANALNDAGIPILGTTPDSID 688

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V   G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 689 LAEDRERFQQLVQKLGLKQPHNGIASTDEEALNIAEGIGFPLVIRPSFVLGGRAMEIVRD 748

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +L++ Y+ G +E+    + D         +   +       
Sbjct: 749 MDQLRRYISDAVVVSGDSPVLLDSYLSGAVEVDVDCLSDGKNTHVAGIMQHIEEAG---V 805

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   +  E++       +A+   G+    F        V+ +E+N +
Sbjct: 806 HSGDSACSLPPYSLSDAMIAEIRSQTEKLAKALNVVGLMNIQFAV--KDETVYLIEVNPR 863

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 864 ASRT----VPFVAKAT 875


>gi|302380992|ref|ZP_07269453.1| pyruvate carboxylase [Finegoldia magna ACS-171-V-Col3]
 gi|302311213|gb|EFK93233.1| pyruvate carboxylase [Finegoldia magna ACS-171-V-Col3]
          Length = 1139

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 76/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++   + +A  K   A +  +G   E+           I +            DK++
Sbjct: 64  LDIEK--IIAIAKSKHCDAIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQ 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V    GV     +       +      + I  P ++K   GG   G+ +++K+  + 
Sbjct: 122 SKLVAKKAGVQTIEGVETPIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLM 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              + + + +       + +++        +    +      +         ++      
Sbjct: 182 NSFVSAQNESKKAFGSDDMFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQKV 241

Query: 212 THVLPAKIPLDIYKEV-QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA    +  K      A    + +G       +FL D      +++E+N +
Sbjct: 242 VEFAPAFSISEKTKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNPR 295


>gi|296387740|ref|ZP_06877215.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa PAb1]
          Length = 393

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 45/290 (15%), Positives = 82/290 (28%), Gaps = 45/290 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK  A  L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVAIELQRLGCEVIAVDRYGNAPAMQVAHRSHVISMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   KP      +        LV+   E   +  T      +       R      
Sbjct: 67  LRAVIEQEKPHYIVPEIE-AIATATLVELEAEGYTVVPTARAAQLTMNREGIRRLAAEEL 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                                 +  P V+KP+   S  G  ++K    +      +    
Sbjct: 126 GLPTSPYHFADTFEDYRRGVERVGYPCVVKPIMSSSGKGQSILKGPDDLQAAWDYAQEGG 185

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLP 216
              +        G  +      D   ++T + V   D  ++                  P
Sbjct: 186 RAGK--------GRVI-VEGFIDFDYEITLLTVRHVDGTTFCAPIGHRQVKGDYHESWQP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +      E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 237 QAMSAQALAESERVARAVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|222106837|ref|YP_002547628.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221738016|gb|ACM38912.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 462

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 30/179 (16%), Positives = 62/179 (34%), Gaps = 19/179 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +IK   GG   GI + +  +       Q+SS           Y++ +      + 
Sbjct: 152 IGFPVMIKAAAGGGGRGIRIAETMEDFERHFPQASSEALAAFGDGGLYIEKVITRARHVE 211

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              L   E A+   +      +            ++P D+ K +   A    +++  RG 
Sbjct: 212 VQILGDGENAIHCFERECSLQRRRQKVWEEGPSVRLPDDVRKALCDSAVALARSVHYRGA 271

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
              ++L+D  S + +++E+N +              +       G    +L+  M+  A
Sbjct: 272 GTVEYLYDEQSGEFYFIEVNTR----------IQVEHPVTEMITGI---DLVQEMIRIA 317


>gi|221128621|ref|XP_002166024.1| PREDICTED: similar to propionyl-Coenzyme A carboxylase, alpha
           polypeptide [Hydra magnipapillata]
          Length = 1281

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 81/291 (27%), Gaps = 32/291 (10%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF--------NVLHGNFGEDGLVQAILELL 75
           S +++  FK+          L L +L  D             +H  +G            
Sbjct: 113 SHIKETDFKIEL----PPGDLSLNYLNVDFIIEKSLKLNVTAVHPGYGFVSESAEACLKF 168

Query: 76  E-----IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           E          +  +    S    ++        +     +      +    +I  P ++
Sbjct: 169 ENAGIIWIGPSATNIVDFSSKHISKNIARSCGVPIADYAIVESVESCLKESEIIGYPVIL 228

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K   GG  +G+   +    +                  +  ++     C  +    +   
Sbjct: 229 KLSSGGGGIGMYRCENKSDVLKYFPLVELKTKSVFKGSKILIEKFLSNCHHIEIQIIGDG 288

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
              V         ++  +       P+     +  +++   A    Q +  R +   +F+
Sbjct: 289 NGHVISLAERECSIQRRNQKLIEEAPSPFLSQETRQKMCSDAIKLAQFVSYRSVGTVEFV 348

Query: 250 FDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYA--GYSFR-ELLLWMVEDA 296
            D     + F+LE+N +              +A     F  +L+  M++ A
Sbjct: 349 VDDSKPNEYFFLEVNTR----------LQVEHAVTEMLFDVDLVEIMIKLA 389


>gi|194014433|ref|ZP_03053050.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
 gi|194013459|gb|EDW23024.1| carbamoyl-phosphate synthase, large subunit [Bacillus pumilus ATCC
           7061]
          Length = 1026

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 100/302 (33%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+KV  ++ +                      SV  ++   KPD    
Sbjct: 29  SGTQGCMALKEEGYKVILVNNNPATIMTDESFADEIYFEPLSVDSVTRIIEKEKPDGLLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
            L G    +  V+      L+   +    + +       D+ + + ++      VP    
Sbjct: 89  NLGGQTALNLAVELEKAGVLKKHGVTLLGTSVETIENGEDREKFRALMKQLNEPVPDSEI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +     +  P +++P       G  +   +++    +  +   +   Q L+E+
Sbjct: 149 VDNAKDALQFAKEVGFPVILRPAYTLGGKGGGIALTEEAFKPLIEGALLASPIHQCLVEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I V   +       ++  +        +    Y+ ++  
Sbjct: 209 SIAG-FKEVEYEVMRDRQNTCITVCNMENIDPVGVHTGDSIVVAPSQTLTDQDYQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+   G     F  DPLS++ F +E+N  P ++  S     +   GY   ++  
Sbjct: 268 SLKIISALDVVGGCNIQFALDPLSKEYFVIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/272 (15%), Positives = 91/272 (33%), Gaps = 16/272 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     +  V+   + D       G    +         + +  T    L 
Sbjct: 610 DRLYFEPITL---EHILNVVEAEQIDFVIVQFGGQTAINVAEGLEKAGITLLGTSFDTLD 666

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           +    D         +       +       +   + I  P +I+P      +G+IV++ 
Sbjct: 667 ALEDRDLFYQLLDELNLPHAKGNTAHSKEEALTHANSIGYPVLIRPSYVIGGMGMIVVQS 726

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           +  +   L Q     +   +LI++YV G E+   ++ D          P    +  +   
Sbjct: 727 EAHLTSLLDQPDHLPY--PILIDEYVTGKEVEVDLISDGKTTFI----PTIVEHIEKAGV 780

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            S +S  +LP+    + I ++V   +    + +  +GI    F+      +   LE+N +
Sbjct: 781 HSGDSFAILPSVSISEDIKQQVHIASEQIAKKLAFKGIMNIQFVI--KGDQALVLEVNPR 838

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
              T     P ++   G     L   ++  A+
Sbjct: 839 ASRT----VPVVSKVMGIDMIPLATQLLAGAT 866


>gi|223935339|ref|ZP_03627257.1| Carbamoyl-phosphate synthase L chain ATP-binding [bacterium
           Ellin514]
 gi|223896223|gb|EEF62666.1| Carbamoyl-phosphate synthase L chain ATP-binding [bacterium
           Ellin514]
          Length = 501

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/313 (11%), Positives = 90/313 (28%), Gaps = 42/313 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL + G++V  +         D + +    +  + P+                
Sbjct: 29  SGTQACKALREEGYRVILVNSNPATIMTDPEFADRTYIEPITPECVEKIIAREVEEMKRL 88

Query: 55  --------FNVLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                      L G    +  +    +  LE   +    +   A     D+   K ++  
Sbjct: 89  GAKGKLVLLPTLGGQTALNTAMALNRRGTLEKYGVEMIGANAQAIERGEDRQIFKDLMIK 148

Query: 103 CGVPVCPSILVNRFTMDSQ---HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            G+ V  S   +           +   P +I+P       G  +    +       +   
Sbjct: 149 IGLDVPISGTAHNLEEARAVAEKIGRFPLIIRPAYTLGGTGGGIGYNREEFEEIAKRGIE 208

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            +   ++L+E+ + G +     +     D   I     +F    +      +   +    
Sbjct: 209 LSPVSEILVEESLLGWKEYEMEVMRDRADNCVIICSIENFDPMGVHTGDSITVAPIQTLT 268

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +          +  +     G S   F  +P + ++  +E+N  P ++  S     + 
Sbjct: 269 DKEYQIMRDASFAVIREIGVETGGSNIQFGVNPDNGRMVIIEMN--PRVSRSS--ALASK 324

Query: 280 YAGYSFRELLLWM 292
             G+   ++   +
Sbjct: 325 ATGFPIAKIAAKL 337


>gi|183601881|ref|ZP_02963250.1| JadJ [Bifidobacterium animalis subsp. lactis HN019]
 gi|219682795|ref|YP_002469178.1| JadJ [Bifidobacterium animalis subsp. lactis AD011]
 gi|241190371|ref|YP_002967765.1| JadJ [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|241195777|ref|YP_002969332.1| JadJ [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|183218766|gb|EDT89408.1| JadJ [Bifidobacterium animalis subsp. lactis HN019]
 gi|219620445|gb|ACL28602.1| JadJ [Bifidobacterium animalis subsp. lactis AD011]
 gi|240248763|gb|ACS45703.1| JadJ [Bifidobacterium animalis subsp. lactis Bl-04]
 gi|240250331|gb|ACS47270.1| JadJ [Bifidobacterium animalis subsp. lactis DSM 10140]
 gi|289178094|gb|ADC85340.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium animalis subsp. lactis BB-12]
 gi|295793358|gb|ADG32893.1| JadJ [Bifidobacterium animalis subsp. lactis V9]
          Length = 624

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 74/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V  
Sbjct: 69  LIDILRRSGADAVHPG-YGFLSEVPSFADKVIEAGATWVGPSSRALTDLGDKISARRVAV 127

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I  +   M       H    P ++K   GG   GI +++ D  +    L  
Sbjct: 128 YAKVPPVPGISHSLGDMRVLLDFAHTHGYPLMLKRADGGGGRGITLVRDDDELRGFYLNH 187

Query: 158 SSWNH---GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           ++       +  +      G  +      D+  + T  +           + +       
Sbjct: 188 NAVQGGDLDEYFVERFIDHGRHVETQCGRDSHGNFTVYSTRDCSVQ----RRNQKLIEEA 243

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  D+ +++   +     A+   G+   +F+      KV++LE+N +
Sbjct: 244 PAPFLGDDVVEQLHAYSHRLFDAVDYVGLGTCEFMVTDA-GKVYFLEVNPR 293


>gi|222056138|ref|YP_002538500.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. FRC-32]
 gi|221565427|gb|ACM21399.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. FRC-32]
          Length = 446

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 87/284 (30%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A ++ G K   +       S+ + LA                  +   +     
Sbjct: 14  ALRIIRACKELGIKTVAVFSTADSESLHVKLADESVCIGPAPSIHSYLNINAIISAAELT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
                    G   E+     I E   I +      +  L  DK+ ++Q V   GVP+   
Sbjct: 74  DAEAIHPGYGFLSENAAFAEICEKCGITFIGPSSESMRLMGDKISARQAVIKEGVPILPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +      +     I  P +IK   GG   G+ ++    ++P           + + 
Sbjct: 134 TKEGVNDVNEAVKIAKKIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQAGFG 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + +  + +   +   +   V+ D   +V  +            +                
Sbjct: 194 NPEVYIEKYCENPRHVEIQVLADKHGNVIHLGERDCSIQ----RRHQKIIEEAPSTVSTP 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ K +   A  A +A+G   +   +FL D  +   F++E+N +
Sbjct: 250 ELRKIMGDAAVRAAKAVGYNSVGTMEFLVD-KNNDFFFMEMNTR 292


>gi|550452|gb|AAA53140.1| 3-methylcrotonyl-CoA carboxylase, biotin-carrier domain [Glycine
           max]
          Length = 674

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ ++          L +         
Sbjct: 108 YHGYDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFG 167

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
           +    ++        +           V         ++          P   I  D   
Sbjct: 168 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISADFRA 227

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A  A +A+        +F+ D +S + +++E+N +
Sbjct: 228 QLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTR 267


>gi|319953862|ref|YP_004165129.1| pyruvate carboxylase [Cellulophaga algicola DSM 14237]
 gi|319422522|gb|ADV49631.1| pyruvate carboxylase [Cellulophaga algicola DSM 14237]
          Length = 1171

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI+ +  +     ++   +         +++       
Sbjct: 171 AIRIGFPVMLKAASGGGGRGMRVIRTEDELRKGFPEARRESLNAFGDDTVFLEKFVENPK 230

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      +         ++          P+   P +    +   A    +A+ 
Sbjct: 231 HIEIQIVADLHGNIVHLYERDCSVQRRYQKVIEFAPSFGLPQETLNSLYTHAINICKAVN 290

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 291 YNNIGTVEFLVD-DDGSIYFIEVNPR 315


>gi|313203018|ref|YP_004041675.1| carbamoyL-phosphate synthase l chain ATP-binding protein
           [Paludibacter propionicigenes WB4]
 gi|312442334|gb|ADQ78690.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Paludibacter propionicigenes WB4]
          Length = 498

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 84/243 (34%), Gaps = 16/243 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           K   +D +R V L L H   DL     +G   E+     +     I +            
Sbjct: 58  KPIFLDPERIVNLALEH-NIDLIHPG-YGFLSENPDFAQLCVDNGINFIGPSPQLIRDMG 115

Query: 92  DKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            K  +K +    G+P+ P     +            I  P ++K   GG   G+ +++K 
Sbjct: 116 LKTVAKSMAIKSGLPLVPGSDGPVTDAHAAKAFADKIGYPVILKASAGGGGRGMRIVEKP 175

Query: 148 QSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           ++I  +   +S      + +GD  + +   +   L   +MGD   +V  +   +      
Sbjct: 176 ETIERNFKSASDEALAAFGNGDMFIEKYLQNPKHLEFQIMGDKHGNVVHLGERECSLQRK 235

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K      +  +   +  ++            ++IG       +F+ D      +++E+
Sbjct: 236 HQKILEEAPSASVTPAMRKEMGDMAV----RFAKSIGYYSAGTIEFIMDE-DGSYYFMEM 290

Query: 263 NVQ 265
           N +
Sbjct: 291 NTR 293


>gi|254422083|ref|ZP_05035801.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7335]
 gi|196189572|gb|EDX84536.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7335]
          Length = 447

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 19/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++    +    L +             Y++       
Sbjct: 149 AAEIGYPVIIKATAGGGGRGMRLVRAPHELGKMFLAAQGEAEASFGNPGVYLEKFVENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+    + + +++   A  A ++I 
Sbjct: 209 HIEFQILADSYGNVVHLGERDCSIQRRHQKLLEEAPSAALDESLRQQMGAAAVRAAESIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +FL D  + + +++E+N       P         EM    G    +L+   + 
Sbjct: 269 YVGAGTVEFLVD-RTGEFYFMEMNTRIQVEHP-------VTEM--VTGI---DLIAEQIR 315

Query: 295 DASCLR 300
            A   R
Sbjct: 316 VAQGDR 321


>gi|86450087|gb|ABC96232.1| carbamoylphosphate synthetase [Syneches sp. JKM-2006]
          Length = 1282

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 368 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKVYFLPLTPEYVEQVIRSERPSGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   I    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELQKNGVFQKYNIQIMGTPIESIIQTEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P + +       LG      ++ +   +L   +  H  QL+I++
Sbjct: 488 AYSVHEALYAAKKLGYPVMARAAFSLGGLGSGFANNEEELR--ILAQQALAHSSQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|52080515|ref|YP_079306.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|52785894|ref|YP_091723.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319645523|ref|ZP_07999755.1| YngH protein [Bacillus sp. BT1B_CT2]
 gi|52003726|gb|AAU23668.1| Carbamoyl-phosphate synthase L chain, ATP binding [Bacillus
           licheniformis ATCC 14580]
 gi|52348396|gb|AAU41030.1| YngH [Bacillus licheniformis ATCC 14580]
 gi|317392409|gb|EFV73204.1| YngH protein [Bacillus sp. BT1B_CT2]
          Length = 446

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +I+ +  +      +             Y++       
Sbjct: 148 AESIGYPVMLKASFGGGGIGMQLIRNESELEKAYEGNQKRAADFFGDGAMYIEKYIEQAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +    L                ++          PA +  +  +      A  A  +IG
Sbjct: 208 HIEIQILTDKYENAVYLWERDCSIQRRQQKIIEEAPAPLFDETMRTKLGEAAVKAALSIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      ++LE+N +
Sbjct: 268 YVNAGTIEFLVDKE-NHFYFLEMNTR 292


>gi|17547506|ref|NP_520908.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           solanacearum GMI1000]
 gi|17429809|emb|CAD16494.1| probable biotin carboxylase protein [Ralstonia solanacearum
           GMI1000]
          Length = 456

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SEGALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   V+ D   +   +            K         +P +  
Sbjct: 194 GNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQKVIEEAPAPHIPRR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 252 --LIERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|20455047|sp|Q42777|MCCA_SOYBN RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha; Flags: Precursor
          Length = 731

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/160 (13%), Positives = 45/160 (28%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ ++          L +         
Sbjct: 165 YHGYDQDIEKMKLEADRIGYPVLIKPTHGGGGKGMRIVHTPDEFVESFLAAQREAAASFG 224

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
           +    ++        +           V         ++          P   I  D   
Sbjct: 225 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAPNISADFRA 284

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A  A +A+        +F+ D +S + +++E+N +
Sbjct: 285 QLGVAAVSAAKAVNYYNAGTVEFIVDTVSDEFYFMEMNTR 324


>gi|311108394|ref|YP_003981247.1| urea carboxylase [Achromobacter xylosoxidans A8]
 gi|310763083|gb|ADP18532.1| urea carboxylase [Achromobacter xylosoxidans A8]
          Length = 1219

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 55/184 (29%), Gaps = 18/184 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+     +  +                    +++      
Sbjct: 146 QAERIGYPVMLKSTAGGGGIGLSRCDNEAELTAAFDSVQRMGEHFFSDGGAFIERYVDNA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +           V         ++  +       PA + P+   + +   A    +++
Sbjct: 206 RHVEVQIFGDGAGRVLALGERDCSVQRRNQKVIEETPAPLLPVATRQALHAAAVRLGESV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R     +F++D      ++LE+N       P +T         A  G    +L+  M+
Sbjct: 266 NYRSAGTVEFIYDAARDSFYFLEVNTRLQVEHP-VTE--------AVTGL---DLVECML 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RVAA 317


>gi|163789340|ref|ZP_02183781.1| pyruvate carboxylase [Flavobacteriales bacterium ALC-1]
 gi|159875408|gb|EDP69471.1| pyruvate carboxylase [Flavobacteriales bacterium ALC-1]
          Length = 1149

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 75/231 (32%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + +  +      D      +G   E+          +I +            DK+ +K++
Sbjct: 66  KEIVALAKSKNVDAIHPG-YGFLSENSEFARHCAENDIIFIGPDPEVMDELGDKITAKKI 124

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
              C VP+  S    +      +   + I  P ++K   GG   G+ VI+ D+ +  +  
Sbjct: 125 AVKCNVPIIESNKGDLNSLDTAISEANRIGYPVMLKAASGGGGRGMRVIRTDEDLETNFS 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +S+           +++        +    +      +         ++        V 
Sbjct: 185 SASNEALNAFGDGTMFLEKYVENPKHIEVQIVADRHGNIRHLFERDCSVQRRHQKVVEVA 244

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      +   + + A      +    I   +FL D    K++++E+N +
Sbjct: 245 PSFNVSQGVKDALYKYAVAITSEVNYNNIGTVEFLVDQED-KIYFIEVNPR 294


>gi|146277494|ref|YP_001167653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145555735|gb|ABP70348.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodobacter sphaeroides ATCC
           17025]
          Length = 448

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      L+   I +         +  DK+ +K  + + GVP  P     +   
Sbjct: 82  YGFLSENAAFAQALQDHGIEFIGPTADHIRIMGDKITAKDTMKALGVPCVPGSDGGVPDY 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              + +   I  P +IK   GG   G+ V + ++ + +    + S     + + +  + +
Sbjct: 142 ETAITTARAIGFPVIIKATAGGGGRGMKVARNEEELEVAFRTARSEAKAAFGNDEVYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            +             I  ++   + +
Sbjct: 202 YLQKPRHIEIQVFGDGKGRAVHLGERDCSLQ----RRHQKVFEEAPGPVITPEMRARIGK 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A   I   G    +FL+     + +++E+N +
Sbjct: 258 ICAEAVGRINYIGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|312178707|gb|ADQ39289.1| carbamyl-phosphate synthase large subunit [uncultured bacterium]
          Length = 356

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G +   I         D              +S+  +L  H + D   
Sbjct: 29  SGTQALRSLREDGIETILINSNPATIMTDPSMADHVYLKPLTTKSIIEILKDHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCP 109
             + G    +  ++A      E   +      I A  ++ D+ + KQ++S     V    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFNVKIIGVDIDAINITEDREKFKQLMSRIGVPVAPAH 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+P       G   +  +      L +    +   ++LI+
Sbjct: 149 TATSFLQGKEIAQEFGFPLVIRPSFTLGGTGASFVHNEDQFDELLTRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +         +   K    
Sbjct: 209 KALLGWKEYELELLRDKNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDVTFQKMRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P   + +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDENEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328


>gi|260558127|ref|ZP_05830337.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|260408400|gb|EEX01708.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
          Length = 646

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEESPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQQMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|255316440|ref|ZP_05358023.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-76w55]
          Length = 287

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + 
Sbjct: 1   LGYPVLVRPSYVLGGQGMEITYNEEKLSQYLQDAFDRDHKNPVLIDKYLTGREIEVDAIC 60

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +ST + P   I  +I +++          +   G
Sbjct: 61  DKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLG 116

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 117 MVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 159


>gi|241258727|ref|YP_002978611.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240863197|gb|ACS60860.1| urea carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1179

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             ++  P ++K   GG  +G+ +      +                    Y++       
Sbjct: 147 AEIVGYPVMLKSTAGGGGIGMQLCADAAGLKASFESVQRTARASFGDARVYIERFVAEAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA     +I   + + A     ++ 
Sbjct: 207 HVEVQIFGDGKGGVIALGERDCSLQRRNQKVVEETPAPGLSAEIRARLHKAAVDLGSSVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP   + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPQREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|34398177|gb|AAQ67178.1| CAD [Heterostomus sp. NCSU-99072185]
          Length = 1293

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGIFRKFNVKILGTPIQSIIETEDRKIFADRVNEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG         +    L   ++ H +QL+I++
Sbjct: 489 VYSVQEALEAADRLGYPVMARAAFSLGGLGSGFANNQDELTN--LAQQAFAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AINVIRHFGVVGECNIQYALNPFSDEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|242002962|ref|XP_002422558.1| carbamoyl-phosphate synthase, putative [Pediculus humanus corporis]
 gi|212505348|gb|EEB09820.1| carbamoyl-phosphate synthase, putative [Pediculus humanus corporis]
          Length = 2251

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 433 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKVYFLPLECEYVEQVIRCERPDGILL 492

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
              G      G +     I E   +    + I +   + D+    + +      V    +
Sbjct: 493 TFGGQTALNCGVEMERAGIFEKYGVRILGTPIQSIIDTEDRKVFSEKIQQLGEKVAPSAA 552

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG      ++ +   LL      +  QL+I++
Sbjct: 553 VYSVSEALEAAENLGYPVMARAAYSLGGLGSGFAHNEKELT--LLAHQGLTYSKQLIIDK 610

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 611 SLKGW-KEVEYEVVRDSYDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNKEYNMLRTT 669

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P +   + +E+N +  ++  S     +   GY    +  
Sbjct: 670 AINVIRHFGVIGECNIQYALSPNNETYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 725

Query: 291 WM 292
            +
Sbjct: 726 KL 727


>gi|209517604|ref|ZP_03266443.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           H160]
 gi|209502017|gb|EEA02034.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           H160]
          Length = 404

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++        L E+  T      +       R                       
Sbjct: 87  EAIATDELAAIETEALAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNYGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGQVSTYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREIAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|156972540|ref|YP_001443447.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio harveyi
           ATCC BAA-1116]
 gi|269962460|ref|ZP_06176809.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio harveyi 1DA3]
 gi|156524134|gb|ABU69220.1| hypothetical protein VIBHAR_00172 [Vibrio harveyi ATCC BAA-1116]
 gi|269832756|gb|EEZ86866.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio harveyi 1DA3]
          Length = 447

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAIAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|325280706|ref|YP_004253248.1| Pyruvate carboxylase [Odoribacter splanchnicus DSM 20712]
 gi|324312515|gb|ADY33068.1| Pyruvate carboxylase [Odoribacter splanchnicus DSM 20712]
          Length = 494

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 83/252 (32%), Gaps = 8/252 (3%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
             A  +  E  G     +D+DR VGL     K D      +GN  E+  +        I 
Sbjct: 45  ADAVINFPETDGNIPEFLDIDRLVGLA-REYKIDSLHPG-YGNLSENAELAERCRDNGIV 102

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLK 134
           +         L  DK+ +K + +  GVP+      ++            +  P +IK + 
Sbjct: 103 FIGPSPEVIRLMGDKVAAKGIAAQSGVPMLGASQGAVHTLDEARKIAKRLGYPVIIKAVS 162

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   G+ ++     +      +++           +++        +    +      V
Sbjct: 163 GGGGRGMRIVHHQDELEQLYKIATAEAQVAFNDPSVFIEKYLENPKHIEFQIVADNYGNV 222

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                    ++          P+    + + K++   A    +  G + +   +FL D  
Sbjct: 223 VHLGERECSIQRKHQKLMEEAPSPALDERLRKKMAAAAVSLAKQAGYQSLGTVEFLLDHQ 282

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 283 KH-FYFMEMNTR 293


>gi|225683415|gb|EEH21699.1| methylcrotonoyl-CoA carboxylase subunit alpha [Paracoccidioides
           brasiliensis Pb03]
          Length = 754

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK +KGG   G+ +    ++    L+       +S+ +   L+ +      
Sbjct: 216 AERIKFPVLIKAVKGGGGKGMRIASSKETFRDQLISAKSEAMNSFGNDTMLVEKYITTPR 275

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            K    +    LP     DI+   +  A    
Sbjct: 276 HIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLPEATRKDIWDRARAAALA-- 333

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +G  G    +F+FD  + + F++E+N +
Sbjct: 334 --VGYEGAGTVEFIFDNDTGEFFFMEMNTR 361


>gi|254506522|ref|ZP_05118664.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           16]
 gi|219550696|gb|EED27679.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           16]
          Length = 447

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKANTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDNDEVKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|163731532|ref|ZP_02138979.1| acetyl-CoA carboxylase subunit A [Roseobacter litoralis Och 149]
 gi|161394986|gb|EDQ19308.1| acetyl-CoA carboxylase subunit A [Roseobacter litoralis Och 149]
          Length = 450

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   I +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAGFVQIVEDHGISFIGPTAEHIRVMGDKITAKDTMKNLGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P +IK   GG   G+ V +  + +    + + +    +    E
Sbjct: 137 GVPTLEDAQRIGAEIGYPVIIKATAGGGGRGMKVAQNAEDMEKAFMTARAEGKSNFGNDE 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++    T   +        +            L+          P   I  +    + 
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVFEEAPGPSISAEERMAIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 257 KVCADAVARINYIGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|116328575|ref|YP_798295.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116121319|gb|ABJ79362.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
          Length = 483

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/234 (17%), Positives = 79/234 (33%), Gaps = 15/234 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +   K +      +G   E       L+   + +      +  L  DK+ S+  +
Sbjct: 65  NILEAIRKTKAEAVHPG-YGFLSEKSEFAKALQKENVLFLGPTPESMELMGDKINSRIKM 123

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P                  I  P +IK   GG   G+  + K +     L  
Sbjct: 124 EASGVPVVPGYNGQDQNPNVLQREAEKIGYPLMIKATAGGGGKGMKRVYKPEEFLTSLES 183

Query: 157 SSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +          G   L +       +   V GD   +V  +   +        K    + 
Sbjct: 184 AQREAQKAFGDGTVFLEKYIEMPRHVEVQVFGDKHGNVMHLFERECSIQRRHQKVIEESP 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              LPA    ++  E+ ++A  A ++I   G    +F+      K ++LE+N +
Sbjct: 244 APNLPA----ELRDEICQVAVKAARSIDYVGAGTVEFIL-GKDGKFYFLEMNTR 292


>gi|114771115|ref|ZP_01448555.1| acetyl-CoA carboxylase [alpha proteobacterium HTCC2255]
 gi|114548397|gb|EAU51283.1| acetyl-CoA carboxylase [alpha proteobacterium HTCC2255]
          Length = 447

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/216 (13%), Positives = 68/216 (31%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +LE   I +         +  DK+ +K+ + + GVP  P     +   
Sbjct: 82  YGFLSENASFVQVLEDHGITFIGPSAEHIRMMGDKITAKETMINLGVPCVPGSPGGVPTL 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
                    +  P ++K   GG   G+ +      +            +++ + +  + +
Sbjct: 142 EEAHKVSDKMGFPVIVKATAGGGGRGMKLALTKNDLNEAFGSARSESKAAFGNDEVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            +             I  ++  ++  
Sbjct: 202 YLQKPRHIEVQVFGDGKGRAVHLGERDCSLQ----RRHQKVFEEAPGPTITAELRDKIGS 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A   IG  G    +FL+     + +++E+N +
Sbjct: 258 TCSEAVANIGYSGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|89071133|ref|ZP_01158331.1| carbamoyl-phosphate synthase large subunit [Oceanicola granulosus
           HTCC2516]
 gi|89043318|gb|EAR49541.1| carbamoyl-phosphate synthase large subunit [Oceanicola granulosus
           HTCC2516]
          Length = 1105

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++                    +    V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPDVVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALADMGVLEKFGVEMIGARREAIEMAEDRKLFREAMDRIGIENPKATI 138

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V    ++S                  I  P +I+P       G  V              
Sbjct: 139 VTAPRLESGKRDLKEGVRLALEALEEIGLPAIIRPAFTLGGTGGGVAYNRAEYEHYCRSG 198

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 199 MDASPVGQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALT 258

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +  +       +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 259 LTDKEYQEMRNGSIAVLREIGVETGGSNVQWAINPEDGRMVVIEMN--PRVSRSS--ALA 314

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 315 SKATGFPIAKIAAKL 329



 Score = 41.4 bits (95), Expect = 0.15,   Method: Composition-based stats.
 Identities = 52/319 (16%), Positives = 107/319 (33%), Gaps = 52/319 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL DAG++   +         D D S 
Sbjct: 567 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDAGYETIMVNCNPETVSTDYDTSD 619

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 620 RLYFEPLTFEHVMEILRVEQENGTLHGVIVQFGGQTPLKLANALEEEGIPILGTTPDAID 679

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 680 LAEDRERFQALVNDLGLKQPRNGIAHSDAEALAIADEIGFPLVIRPSYVLGGRAMEIVRD 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G  E+    + D +       +   +       
Sbjct: 740 MAGLERYIREAVVVSGKSPVLLDSYLAGATEVDVDCLSDGTRVHVAGIMQHIEEAG---V 796

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEI 262
           +S  ++  + P  +  D+ +E++R        +G  G+    F          +VF +E+
Sbjct: 797 HSGDSACCLPPHTLAADVVEELKRQTEALALRLGVVGLMNVQFAVKANEAGENEVFLIEV 856

Query: 263 NVQPGMTPVSIFPEMAAYA 281
           N +   T     P +A   
Sbjct: 857 NPRASRT----VPFVAKAT 871


>gi|303235154|ref|ZP_07321774.1| pyruvate carboxylase [Finegoldia magna BVS033A4]
 gi|302493746|gb|EFL53532.1| pyruvate carboxylase [Finegoldia magna BVS033A4]
          Length = 1139

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 76/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++   + +A  K   A +  +G   E+           I +            DK++
Sbjct: 64  LDIEK--IIAIAKSKHCDAIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQ 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V    GV     +       +      + I  P ++K   GG   G+ +++K+  + 
Sbjct: 122 SKLVAKKSGVQTIEGVETPIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLM 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              + + + +       + +++        +    +      +         ++      
Sbjct: 182 SSFVSAQNESKKAFGSDDMFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQKV 241

Query: 212 THVLPAKIPLDIYKEV-QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA    +  K      A    + +G       +FL D      +++E+N +
Sbjct: 242 VEFAPAFSISEKTKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNPR 295


>gi|255519100|ref|ZP_05386776.1| carbamoyl phosphate synthase large subunit [Clostridium difficile
           QCD-97b34]
          Length = 324

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 26/169 (15%), Positives = 65/169 (38%), Gaps = 11/169 (6%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ +   ++ +   L  +   +H + +LI++Y+ G E+    + 
Sbjct: 1   LGYPVLVRPSYVLGGQGMEITYNEEKLIQYLDDAFDRDHKNPVLIDKYLTGREIEVDAIC 60

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
           D    +     P    +       S +ST + P   I  +I +++          +   G
Sbjct: 61  DKEDILI----PGIMEHLERAGVHSGDSTTMYPSQNISDEIKEKIVEYTKKIALDLNVLG 116

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F+      +++ +E+N +   T     P ++  +G    +L   
Sbjct: 117 MVNIQFI--EFQNELYIIEVNPRASRT----VPYISKVSGVPIVDLATK 159


>gi|154508781|ref|ZP_02044423.1| hypothetical protein ACTODO_01290 [Actinomyces odontolyticus ATCC
           17982]
 gi|153798415|gb|EDN80835.1| hypothetical protein ACTODO_01290 [Actinomyces odontolyticus ATCC
           17982]
          Length = 1099

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/302 (10%), Positives = 84/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACRVLKEEGLRVILVNSNPATIMTDPGIADATYVEPITPEVVASIIEKERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +       +       +E+       + +    ++ +     S   V     
Sbjct: 89  TLGGQTALNTAVALSEMGVLERFNVELIGASIDAIRAGEDREEFKEIVERSGAEVARSFI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P      LG       + +     Q  + +   ++L+E+
Sbjct: 149 AHTMEECHAAAAELGYPLVVRPSFTMGGLGSGFAYTPEDLERIAGQGLAASITTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++ +     
Sbjct: 209 SILGWKEYELELMRDKADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDREMQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIRAVGVDTGGCNIQFAIHPETGRIIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|115433702|ref|XP_001216988.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
 gi|114189840|gb|EAU31540.1| hypothetical protein ATEG_08367 [Aspergillus terreus NIH2624]
          Length = 650

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/228 (16%), Positives = 79/228 (34%), Gaps = 8/228 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +    K D      +G   E     + ++   I     G +  A + DK+++KQ+  
Sbjct: 69  LVELARQHKIDTIHPG-YGFLSESAEFASRMQEAGITVIGPGPVTLARTGDKLQAKQLAM 127

Query: 102 SCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            C VPV P++                +  P +IK + GG   GI ++++D+ +   +  +
Sbjct: 128 ECNVPVLPAMERPTADATEIRAFARRVGYPVMIKAVDGGGGRGIRLVRRDEELENAVRGA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +    + +E+          V              +        +            
Sbjct: 188 MGESPSQTVFVEKAAVDGYHHIEVQVVGDGTDVRHLWERDCSVQ---RRFQKVIEIAPSL 244

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                + ++V   A    +AI  R +   +FL     ++ ++LEIN +
Sbjct: 245 MQNRPLIQQVVDAALRMARAINYRSLGTVEFLVHEQQKEFYFLEINPR 292


>gi|39944808|ref|XP_361941.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
 gi|145021572|gb|EDK05701.1| hypothetical protein MGG_04386 [Magnaporthe oryzae 70-15]
          Length = 1854

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 32/182 (17%), Positives = 62/182 (34%), Gaps = 18/182 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG  +G+ V    +S+  D          +      +++       
Sbjct: 796 AGRIGFPVMIKSTAGGGGIGLRVSHDAESLKEDYESVQRLAASNFGDAGVFLERFVQRAR 855

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L     AV         L+  +       P   +P ++ + +++ A     A+ 
Sbjct: 856 HIEVQVLGDGNGAVVTVGERDCSLQRRNQKVVEECPAFFVPHEVRQRMRKAAVDLAAAVS 915

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R +   +F++D      F+LE+N       P +T            G    +L+  MV+
Sbjct: 916 YRNVGTVEFIYDVDKEDFFFLEMNTRLQVEHP-VTE--------EVMGL---DLVESMVQ 963

Query: 295 DA 296
            A
Sbjct: 964 LA 965


>gi|325953939|ref|YP_004237599.1| carbamoyl-phosphate synthase, large subunit [Weeksella virosa DSM
           16922]
 gi|323436557|gb|ADX67021.1| carbamoyl-phosphate synthase, large subunit [Weeksella virosa DSM
           16922]
          Length = 1075

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                       V  V+A  +PD    
Sbjct: 27  SGSQALKALKEEGIKTILINPNIATVQTSEGIADEIYFLPITPYFVEKVIAKERPDGILV 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G        +     I +   +    + I     + D+    + +   GV    S  
Sbjct: 87  AFGGQTALNCAVELNKNKIFDRYNVRVLGTPISVIESTEDRDIFIEKLDQIGVLTARSEA 146

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           V            I  P +I+       LG      ++ +   + ++    + +Q+L+E+
Sbjct: 147 VETVEDAMAAGKKIGFPLIIRAAYALGGLGSGFANNEEELYELVEKAF--TYSNQVLVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +                 + Y +++ +
Sbjct: 205 SLKGWKEIEYEVVRDAADNCITVCNMENFDPIGVHTGESIVVAPSQTLTSSE-YHKLREI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     + FDP+S +   +E+N +  ++  S     +   GY   
Sbjct: 264 AIRTIRHLGVVGECNIQYAFDPVSEEYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|254441537|ref|ZP_05055030.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
 gi|198251615|gb|EDY75930.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Octadecabacter antarcticus 307]
          Length = 461

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 38/286 (13%)

Query: 13  EVSLSSGKACASALEDAGF--------------------KVSQIDVDRS---------VG 43
           E+S+        A ++ G                     +   +   +S         + 
Sbjct: 13  EISVR----IIRAAKELGITTIQAYSEGDAEMLSVKLADEAICVGPAKSKDSYLNVVRLM 68

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             +     D      +G   E       +E   I +            DK+ +++   + 
Sbjct: 69  QAIKDSGADAVHPG-YGFLSESPEFAHAIESAGITFVGPTAATIERMGDKVEARKAAEAA 127

Query: 104 GVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           GVPV P     I            I  P +IK   GG   GI V   +  +     Q+ +
Sbjct: 128 GVPVVPGSKGRIETVDDAAQIASDIGYPVMIKAAAGGGGRGIRVADNEGELRSLAPQAQA 187

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                      Y++    +   +    L     AV   +      +             +
Sbjct: 188 EAEAAFGDGGLYLERAVRSPRHIEVQILGDGTNAVHCFERECSIQRRRQKVWEEAGAVCL 247

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  + + + A    +A+  RG    ++L+D  + + F++E+N +
Sbjct: 248 DEETRQTLCKSAVALAKAVNYRGAGTLEYLYDEATNEFFFIEMNTR 293


>gi|94984574|ref|YP_603938.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           geothermalis DSM 11300]
 gi|94554855|gb|ABF44769.1| acetyl-CoA carboxylase, biotin carboxylase [Deinococcus
           geothermalis DSM 11300]
          Length = 445

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G  V++  + +     Q+              ++       
Sbjct: 147 AKQIGYPVLLKASAGGGGRGQKVVRTQEELRSAFGQAQEEARLYFGDPAIIMEKFLEEFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +   +  V         ++  +       P+ +P  + +E+        + +  
Sbjct: 207 HVEVQVMGDGQGHVIHIGERDCSIQRRNQKLIEEAPSTLPESLRQEILAAGVRLAKHVHY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+ D      +++E+N +
Sbjct: 267 AGAGTLEFIVD-RDGNYYFMEMNTR 290


>gi|323492071|ref|ZP_08097233.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           brasiliensis LMG 20546]
 gi|323313632|gb|EGA66734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           brasiliensis LMG 20546]
          Length = 447

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADEAICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDDDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEGELVEAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|171318172|ref|ZP_02907338.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria MEX-5]
 gi|171096640|gb|EDT41529.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria MEX-5]
          Length = 404

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFDAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLETRTYFCEPVGHVQVAGDYVESWQPQPMSALALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGMFGVELFV--RGDDVWFSEVSPRP 294


>gi|116248826|ref|YP_764667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhizobium
           leguminosarum bv. viciae 3841]
 gi|115253476|emb|CAK11866.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 461

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI ++     +      +S+           Y++ +     
Sbjct: 149 AGEIGFPVMIKAAAGGGGRGIRIVDSIAELEQQFPLASAEALAAFGDGGLYLEKVIARAR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        +  V   +      +             +P D+ + +   A    + +G 
Sbjct: 209 HVEVQIFGDGQNFVHFFERECSLQRRRQKVWEEAPAFMLPADMRERLCVSAVALAREVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++L+D  +   +++E+N +
Sbjct: 269 RGAGTVEYLYDDETGDFYFIEVNTR 293


>gi|172061281|ref|YP_001808933.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria MC40-6]
 gi|171993798|gb|ACB64717.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria MC40-6]
          Length = 404

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/270 (13%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFDAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     K+ + +A    +
Sbjct: 207 EITQLTVRAIDPATLETRTYFCEPVGHVQVAGDYVESWQPQPMSALALKKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|125623494|ref|YP_001031977.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|6455967|gb|AAF09095.1|AF068759_1 pyruvate carboxylase [Lactococcus lactis subsp. lactis]
 gi|124492302|emb|CAL97236.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris MG1363]
 gi|300070246|gb|ADJ59646.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris NZ9000]
          Length = 1137

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 8/234 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + + L     D      +G   E+      +    + +    +    +  DK++
Sbjct: 61  LDIDDIIRVALES-GADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIK 118

Query: 96  SK---QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +K         G+P     +     ++       P +IK   GG   G+ V + D  +  
Sbjct: 119 AKAAADEAQVPGIPGTNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHD 178

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++ S   G     E YV+        +    L  +   +         ++  +    
Sbjct: 179 GYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERDCSVQRRNQKVI 238

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     +   E+   A    + +G       +FL      K +++E+N +
Sbjct: 239 EIAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNPR 290


>gi|116511467|ref|YP_808683.1| pyruvate carboxylase [Lactococcus lactis subsp. cremoris SK11]
 gi|116107121|gb|ABJ72261.1| Pyruvate carboxylase [Lactococcus lactis subsp. cremoris SK11]
          Length = 1137

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 77/234 (32%), Gaps = 8/234 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + + L     D      +G   E+      +    + +    +    +  DK++
Sbjct: 61  LDIDDIIRVALES-GADAIHPG-YGLLSENLEFATKVRAAGLVFVGPELHHLDIFGDKIK 118

Query: 96  SK---QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +K         G+P     +     ++       P +IK   GG   G+ V + D  +  
Sbjct: 119 AKAAADEAQVPGIPGTNGAVDIDGALEFAQTYGYPVMIKAALGGGGRGMRVARNDAEMHD 178

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++ S   G     E YV+        +    L  +   +         ++  +    
Sbjct: 179 GYARAKSEAIGAFGSGEIYVEKYIENPKHIEVQILGDSHGNIVHLHERDCSVQRRNQKVI 238

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     +   E+   A    + +G       +FL      K +++E+N +
Sbjct: 239 EIAPAVGLSPEFRNEICEAAVKLCKNVGYVNAGTVEFLV--KDDKFYFIEVNPR 290


>gi|328875482|gb|EGG23846.1| dihydroorotase [Dictyostelium fasciculatum]
          Length = 2221

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                      SV  V+ + KPD    
Sbjct: 421 SGSQAIKALKEEGIKTVLINPNIATVQTSPGLADKVYFLPVNAASVTKVIINEKPDGILV 480

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     ILE   +    + I     + D+    + +   +  +    +
Sbjct: 481 TFGGQTALNCGIELYKSGILEKYNVKVMGTPIDTIISTEDRGIFAEKLAEINERIAPSEA 540

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 +++S   I  P +++       LG       + +   + ++ +     Q+LIE+
Sbjct: 541 CNTMEESLESAKKIGYPVIVRAAYCLGGLGSGFANNPEELTALVTEALAT--STQVLIEK 598

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++ +
Sbjct: 599 SLKGW-KEIEYEVLRDSHDNCITVCNMENFDPLGIHTGESIVVAPSQTLTDREYQMLREV 657

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 658 AIKTVRHLGVVGECNIQYALNPDNEEYCIIEVNAR--LSRSS--ALASKATGYPLA 709


>gi|319790183|ref|YP_004151816.1| phosphoribosylglycinamide formyltransferase 2 [Thermovibrio
           ammonificans HB-1]
 gi|317114685|gb|ADU97175.1| phosphoribosylglycinamide formyltransferase 2 [Thermovibrio
           ammonificans HB-1]
          Length = 394

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 70/265 (26%), Gaps = 17/265 (6%)

Query: 19  GKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +  A        +   ID+   R +  ++   KPD     +     +  +         
Sbjct: 48  AQQVA-------HRYYVIDMRDGRQIRNIVYREKPDFIVPEIEAIDTDMLVELEKEGFTV 100

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +P   +  L       +  + + +                   +   +  P V+KP+   
Sbjct: 101 VPCARATKLTMDRIGIRRLAAEELGLKT-SAYRFAETFEEFKRAVEELGYPVVVKPVMSS 159

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           S  G  V+++   +      +     G    +        +            T      
Sbjct: 160 SGKGQSVVREPSQLEWAFRYAKENARGKGNALIIEE---FINFDFEITLLTVRTRNQGTL 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                   +          P  +     K+ + +A     A+G  GI   +F       +
Sbjct: 217 FCEPIGHRQVDGDYHESWQPQPMSEAALKKAKEMAKAVTDALGGYGIFGCEFFV--KGDE 274

Query: 257 VFWLEINVQPGMTPVSIFPEMAAYA 281
           V++ E++ +P      +    +   
Sbjct: 275 VWFSEVSPRP--HDTGMVTMASQNM 297


>gi|254584038|ref|XP_002497587.1| ZYRO0F08976p [Zygosaccharomyces rouxii]
 gi|238940480|emb|CAR28654.1| ZYRO0F08976p [Zygosaccharomyces rouxii]
          Length = 1833

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 775 AAELEYPIMVKSTAGGGGIGLQKVDSEDQIERVFETVQHQGKSFFGDSGVFLERFVENAR 834

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +                L+  +       PA    D     +++ +      + 
Sbjct: 835 HVEIQMMGDGYGKAIALGERDCSLQRRNQKVVEETPAPNLSDSTRARMRKASENLGSLLK 894

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +     +F++D    + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 895 YKCAGTVEFIYDEKRDEFYFLEVNARLQVEHP-ITE--------AVTGL---DLVEWMLR 942

Query: 295 DAS 297
            A+
Sbjct: 943 IAA 945


>gi|91778722|ref|YP_553930.1| Urea amidolyase-related protein [Burkholderia xenovorans LB400]
 gi|91691382|gb|ABE34580.1| Urea amidolyase-related protein [Burkholderia xenovorans LB400]
          Length = 1205

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 56/183 (30%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +       +     +      Y++       
Sbjct: 148 AESIGYPVMLKSTAGGGGIGMSLCRDAAQLESVFASVARLGEANFANAGVYLEKFVENAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         ++  +       PA          +   A    QA+ 
Sbjct: 208 HIEVQIFGDGHGGVIALGERDCSVQRRNQKVIEETPAPGLTPAERSALHASAVRLAQAVK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YKSAGTVEFVFDADTRQFYFLEVNTR----------LQVEHCVTEEVTGI---DLVEWMI 314

Query: 294 EDA 296
            +A
Sbjct: 315 REA 317


>gi|88860826|ref|ZP_01135462.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoalteromonas
           tunicata D2]
 gi|88817039|gb|EAR26858.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoalteromonas
           tunicata D2]
          Length = 393

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 96/316 (30%), Gaps = 44/316 (13%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L GG   E    L  GK     L+  G +V  +D           DRS          
Sbjct: 15  VLLCGG--GE----L--GKEVVIELKRLGCEVIVLDRYEHAPAMQVADRSHVLSMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   +PDL    +     ++ L         +P   +  L       +  + + +S
Sbjct: 67  LRAIIELEQPDLIVPEIEAIATDELLALEQEGFTVVPSAKAAQLTMNREGIRRLAAEDLS 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                    +      + +   I  P V+KP+   S  G  V++ +  + L      +  
Sbjct: 127 IPT-SQYQFVDSEADFVKAVQAIGMPCVVKPIMSSSGKGQSVVRTEADLSLA--WHYAQE 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        V+G            L V   A          ++ +        P  +  
Sbjct: 184 GGRAGKGRVIVEG--FVDFDYEITLLTVRHRAGTSFCQPIGHVQVNGDYQQSWQPQAMSE 241

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSI 273
               + Q +A    +A+G  G+   +         V++ E++ +P   GM       +S 
Sbjct: 242 VALLKSQEMASKVTEALGGFGLFGVELFV--KGDDVYFSEVSPRPHDTGMVTLISQDLSE 299

Query: 274 FPEMAAYA-GYSFREL 288
           F   A    G     +
Sbjct: 300 FALHARAILGLPIPNI 315


>gi|332557524|ref|ZP_08411846.1| pyruvate carboxylase [Rhodobacter sphaeroides WS8N]
 gi|332275236|gb|EGJ20551.1| pyruvate carboxylase [Rhodobacter sphaeroides WS8N]
          Length = 1154

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  +  +   + +            E Y++
Sbjct: 144 MEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L     A+         ++  +       PA    +  +        
Sbjct: 204 KMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQKVVERAPAPYLTEEQRTEICELGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  S K +++E+N +
Sbjct: 264 RICAHVNYECAGTVEFLMDMDSEKFYFIEVNPR 296


>gi|297181470|gb|ADI17658.1| acetyl/propionyl-CoA carboxylase, alpha subunit [uncultured alpha
           proteobacterium HF0130_20P23]
          Length = 668

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 43/307 (14%), Positives = 100/307 (32%), Gaps = 43/307 (14%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
           AV +GG S        S ++              +++D+ +   +     D      +G 
Sbjct: 48  AVAIGGTS--------SAES-------------YLEIDKVLSAAIETES-DAIHPG-YGF 84

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS- 120
             E+ +        +I +      A  +   K ++K+++ S GVP+ P        +   
Sbjct: 85  LSENPVFAKECAAAKIIFVGPPATAIEVMGSKSKAKKLMESAGVPLVPGYHGEEQEVSYL 144

Query: 121 ---QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
               + I  P ++K   GG   G+ +++    +   +  S              ++    
Sbjct: 145 SQKANEIGFPVLVKASAGGGGRGMRIVESLDDLETAVNSSKREAKAAFSDDHLMLEKFIT 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +        +  +         ++      T   PA    ++  K++   A  A +
Sbjct: 205 EPRHIEVQIFADEKGNIVHLFERDCSVQRRYQKVTEEAPAPNLSIETRKKLFEAALAAAR 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA---GYSFRELLLWMV 293
           A    G    +F+ D    + +++E+N +              ++     S  +L+ W +
Sbjct: 265 ATNYVGAGTIEFIADA--NQFYFIEMNTR----------LQVEHSVTEAISGIDLVEWQI 312

Query: 294 EDASCLR 300
             A+  R
Sbjct: 313 RIANGER 319


>gi|302893675|ref|XP_003045718.1| hypothetical protein NECHADRAFT_34114 [Nectria haematococca mpVI
           77-13-4]
 gi|256726645|gb|EEU40005.1| hypothetical protein NECHADRAFT_34114 [Nectria haematococca mpVI
           77-13-4]
          Length = 488

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ +++   ++  +  ++ S       L +  ++      
Sbjct: 177 QAERIGLPVMIKASAGGGGKGLRIVRDMSALESEFNRAQSEAQRSFGLSDCIMEKYIEAG 236

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAI 238
             +    +  +   V         ++          P        +E     A    + +
Sbjct: 237 KHVEVQIMGDSHGKVISLWERDCSVQRRHQKVVEESPCPWLNQSQREAMCAEAVKIGELL 296

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
              G    +F+ D  +   ++LE+N
Sbjct: 297 KYEGAGTVEFILDVATGNFYFLEVN 321


>gi|254510072|ref|ZP_05122139.1| pyruvate carboxylase [Rhodobacteraceae bacterium KLH11]
 gi|221533783|gb|EEE36771.1| pyruvate carboxylase [Rhodobacteraceae bacterium KLH11]
          Length = 1146

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 47/141 (33%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+  I  +  +   +L+            E Y++ +      +   
Sbjct: 156 YPLMLKASWGGGGRGMRPILSEDELEEKVLEGRREAEAAFGNGEGYLEKMITRARHVEVQ 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
            L  T+  +         ++  +       PA    +    E+  L       +      
Sbjct: 216 ILGDTQGEIYHLYERDCSVQRRNQKVVERAPAPYLSEAQRAEICELGRRICAHVNYECAG 275

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL D  + K +++E+N +
Sbjct: 276 TVEFLMDMNTGKFYFIEVNPR 296


>gi|34398161|gb|AAQ67170.1| CAD [Anthalia sp. NCSU-99071950]
          Length = 1292

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTREYVEQVIKSERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   I    + I +   + D+    + V+     V    +
Sbjct: 427 TFGGQTALNCGIELERAGIFKKYNIRIMGTPIRSIIETEDRKIFSERVAEIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      M++   +  P + +       LG       + +   +L   +  H  QL+I++
Sbjct: 487 VYSVNEAMEAAEKLGYPVMARAAFSLGGLGSGFANCKEEL--KVLAHHALAHSSQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|77462642|ref|YP_352146.1| pyruvate carboxylase [Rhodobacter sphaeroides 2.4.1]
 gi|77387060|gb|ABA78245.1| Pyruvate carboxylase [Rhodobacter sphaeroides 2.4.1]
          Length = 1154

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  +  +   + +            E Y++
Sbjct: 144 MEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L     A+         ++  +       PA    +  +        
Sbjct: 204 KMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQKVVERAPAPYLTEEQRTEICELGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  S K +++E+N +
Sbjct: 264 RICAHVNYECAGTVEFLMDMDSEKFYFIEVNPR 296


>gi|126461534|ref|YP_001042648.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17029]
 gi|126103198|gb|ABN75876.1| pyruvate carboxylase [Rhodobacter sphaeroides ATCC 17029]
          Length = 1154

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  +  +   + +            E Y++
Sbjct: 144 MEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L     A+         ++  +       PA    +  +        
Sbjct: 204 KMIQRARHVEVQILGDKYGAIYHLYERDCTVQRRNQKVVERAPAPYLTEEQRTEICELGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  S K +++E+N +
Sbjct: 264 RICAHVNYECAGTVEFLMDMDSEKFYFIEVNPR 296


>gi|320170371|gb|EFW47270.1| aspartate transcarbamylase [Capsaspora owczarzaki ATCC 30864]
          Length = 2266

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 85/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL+  G     I+ +                       V  V+   KPD    
Sbjct: 445 SGSQCIKALKQEGISTVLINPNIATIQTSKGLADKVYFLPVTPEYVLKVVRQEKPDGILV 504

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   EL  +     G     +   + R         +    +      
Sbjct: 505 TFGGQTALNCGIKIRHELEALGCRVLGTQIDTIMATEDREIFAAKMKEIDEPVARSAAAN 564

Query: 117 TMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+     I      P +++       LG      +  +   + ++ +     Q+L+E+ +
Sbjct: 565 TVAEAVEIGNAIGYPLIVRAAFTLGGLGSGFADNEAELRALVTKALAT--SPQVLVERSM 622

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G             +   I V   + +     ++  +        +    Y  ++  A 
Sbjct: 623 KGW-KEVEYEVVRDCNDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDREYHMLRNSAV 681

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 682 KTIRHLGVVGECNIQFALNPDAEEYCIIEVNAR--LSRSS--ALASKATGYPLA 731


>gi|34398169|gb|AAQ67174.1| CAD [Dolichopus sp. NCSU-99071924]
          Length = 1285

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSTGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRSGVFAKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG      +Q +    L   ++ H +QL++++
Sbjct: 488 VYSVKEALDAATKLGYPVMARAAFSLGGLGSGFANNEQELEQ--LAQQAFAHSNQLIVDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNHEYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGIVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|330507533|ref|YP_004383961.1| acetyl-CoA carboxylase [Methanosaeta concilii GP-6]
 gi|328928341|gb|AEB68143.1| acetyl-CoA carboxylase [Methanosaeta concilii GP-6]
          Length = 496

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 82/280 (29%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G     +  +     + A    +  F                       
Sbjct: 16  AIRVMRACRELGIPSVAVYSEADKNALFAKYADEAVFIGPSPSSQSYLKIDNIIKAALET 75

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+ +  +  +   I +      A      K+ ++Q +   GVP+ P 
Sbjct: 76  GAEAIHPGYGFLSENTVFASTCKENGIVFIGPPSTAIDAMGSKITARQTMKEAGVPIVPG 135

Query: 111 ILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           I       D        I  P ++KP  GG  +G+ ++   + +   L  S S       
Sbjct: 136 IEEGINDPDEAMDLADGIGYPIILKPAAGGGGIGMKIVGSREEMLPALTSSQSVARNAFG 195

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               Y++        +    L                ++          P   +  ++ +
Sbjct: 196 DDTIYIEKYLTEPRHIEFQILADEMGKTIYVSDRECSIQRRHQKLIEESPSPVMSDELRE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +A  A +AIG       +F++       ++LE+N +
Sbjct: 256 RMGSIAVKAAKAIGYASAGTVEFMYSR--GDFYFLEMNTR 293


>gi|170782695|ref|YP_001711029.1| urea carboxylase [Clavibacter michiganensis subsp. sepedonicus]
 gi|169157265|emb|CAQ02450.1| urea carboxylase [Clavibacter michiganensis subsp. sepedonicus]
          Length = 1209

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 26/251 (10%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   + +             K  ++ +   CGVP  P    
Sbjct: 86  AIHPGYGFISESAAFARAVEEAGMVFVGPTWQQIEAFGPKHTARAIAMECGVPCVPGSGL 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       ++   +  P ++K   GG  +GI+    +  +       +     +      
Sbjct: 146 VASEDAAAEAAAAVGYPVMVKASGGGGGVGIVTCADETQLRAAYASVTRLAAANFATPGV 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           +V+        +           V         L+          PA    +  +E    
Sbjct: 206 FVERFIARARHLEVQVFGDGAGEVAILGDRDCSLQRRHQKVVEEAPAPHLPEHVRETMHR 265

Query: 231 AFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGY 283
           +  A  + +G R     +F++D  +  VF+LE+N +            A +       G 
Sbjct: 266 SAAALARHVGYRSAGTVEFVYDDRTEDVFFLEMNTR----------LQAEHPVTEQVLGI 315

Query: 284 SFRELLLWMVE 294
              +L+ WM+ 
Sbjct: 316 ---DLVEWMLR 323


>gi|160890469|ref|ZP_02071472.1| hypothetical protein BACUNI_02911 [Bacteroides uniformis ATCC 8492]
 gi|156860201|gb|EDO53632.1| hypothetical protein BACUNI_02911 [Bacteroides uniformis ATCC 8492]
          Length = 503

 Score = 52.6 bits (124), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 148 CNEIGYPVMLKASMGGGGKGMRLIHNESEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKVVEESPSPFLTPELRREMGEKAVAAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R+ ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KNRRFYFLEMNTR 292


>gi|270296970|ref|ZP_06203169.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. D20]
 gi|270272957|gb|EFA18820.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. D20]
          Length = 503

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I  +  +      + S +         Y++       
Sbjct: 148 CNEIGYPVMLKASMGGGGKGMRLIHNESEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ +E+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKVVEESPSPFLTPELRREMGEKAVAAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R+ ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KNRRFYFLEMNTR 292


>gi|169825269|ref|YP_001692880.1| pyruvate carboxylase [Finegoldia magna ATCC 29328]
 gi|167832074|dbj|BAG08990.1| pyruvate carboxylase [Finegoldia magna ATCC 29328]
          Length = 1139

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 76/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++   + +A  K   A +  +G   E+           I +            DK++
Sbjct: 64  LDIEK--IIAIAKSKHCDAIHPGYGFLSENAEFARRCRENGIIFVGPDESVLHSLGDKVQ 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V    GV     +       +      + I  P ++K   GG   G+ +++K+  + 
Sbjct: 122 SKLVAKKAGVQTIEGVETPIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLM 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              + + + +       + +++        +    +      +         ++      
Sbjct: 182 SSFVSAQNESKKAFGSDDMFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQKV 241

Query: 212 THVLPAKIPLDIYKEV-QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA    +  K      A    + +G       +FL D      +++E+N +
Sbjct: 242 VEFAPAFSISEKTKNELHNDAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNPR 295


>gi|126732548|ref|ZP_01748346.1| acetyl-CoA carboxylase [Sagittula stellata E-37]
 gi|126706994|gb|EBA06062.1| acetyl-CoA carboxylase [Sagittula stellata E-37]
          Length = 449

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E  ++ +        ++  DK+ +K    + G+P  P    
Sbjct: 77  AIHPGYGFLSENARFVQIVEDHDLTFIGPSAQHISMMGDKITAKDTAKALGIPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +               P +IK   GG   G+ V   +  +      + +     + + +
Sbjct: 137 GVPTVDDARKIGAEFGYPVIIKATAGGGGRGMKVAADETQMERAYQTARAEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLQRPRHIEIQVFGDGQGGGVHLGERDCSLQ----RRHQKVFEEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   +G RG    +FL+     + +++E+N +
Sbjct: 253 ARIGKICADAISEMGYRGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|254246384|ref|ZP_04939705.1| Biotin carboxylase [Burkholderia cenocepacia PC184]
 gi|124871160|gb|EAY62876.1| Biotin carboxylase [Burkholderia cenocepacia PC184]
          Length = 455

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/222 (13%), Positives = 72/222 (32%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HG 163
                 +  +     I  P +IK   G    G+ V+  + ++   +  +         + 
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGCGGRGMRVVHTEAALVNAVNMTREEAGRALGNP 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +   +   +   V+ DA  +   +            K         +P +    +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR----L 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 253 IDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|115352409|ref|YP_774248.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria AMMD]
 gi|170701600|ref|ZP_02892546.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria IOP40-10]
 gi|122322587|sp|Q0BD59|PURT_BURCM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|115282397|gb|ABI87914.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Burkholderia ambifaria AMMD]
 gi|170133483|gb|EDT01865.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           ambifaria IOP40-10]
          Length = 404

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVVAVDRYPDAPGHQVAHRAHVIDMTDAAALRAVVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGLAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSFDAFS 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AAVAKIGMPCVVKPVMSSSGKGQSVVRTEADVKPAWDYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     ++ + +A    +
Sbjct: 207 EITQLTVRAIDPATLETRTYFCEPVGHVQVAGDYVESWQPQPMSALALEKSREIAHKVTE 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|331696845|ref|YP_004333084.1| pyruvate carboxylase [Pseudonocardia dioxanivorans CB1190]
 gi|326951534|gb|AEA25231.1| Pyruvate carboxylase [Pseudonocardia dioxanivorans CB1190]
          Length = 457

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ V+     +P  L  +++           YV+       
Sbjct: 150 AREVGLPLIVKASAGGGGRGMKVVSDVAELPSVLTTAAAEAAAAFGDPTLYVERFVRNAR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L      V         L+  +       PA      +   +   A    + IG
Sbjct: 210 HVEVQVLGDRHGHVVHLGERDCSLQRRNQKVVEEAPAPGLPLQVRDALHAAAVRLARRIG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D  + + F+LE+N +
Sbjct: 270 YESAGTVEFVLDRDTGEFFFLEMNTR 295


>gi|260911199|ref|ZP_05917802.1| carbamoyl-phosphate synthase [Prevotella sp. oral taxon 472 str.
           F0295]
 gi|260634679|gb|EEX52766.1| carbamoyl-phosphate synthase [Prevotella sp. oral taxon 472 str.
           F0295]
          Length = 1076

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVQTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGVELYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVEKLNEINVKTIKSEA 147

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CSTIEQARRAAANLGYPVILRAAYALGGLGSGFCDNEEELNK--LAEKTFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|239826483|ref|YP_002949107.1| pyruvate carboxylase [Geobacillus sp. WCH70]
 gi|239806776|gb|ACS23841.1| pyruvate carboxylase [Geobacillus sp. WCH70]
          Length = 1147

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/286 (10%), Positives = 75/286 (26%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48
                 A  + G +   I                                   +  +   
Sbjct: 18  AIRVFRACTELGIRTVAIYSKEDTGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKA 77

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D      +G   E+           I +         +  DK++++      G+PV 
Sbjct: 78  HDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVKARHQAELAGIPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P     +      +        P +IK   GG   G+ +++    +     ++ S     
Sbjct: 137 PGSDGPVHSLEEVVRFAETYGYPIIIKAALGGGGRGMRIVRSKSEVKEAYERAKSEAKAA 196

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   D  + +       +   ++GD   ++  +            +             +
Sbjct: 197 FGSDDVYVEKLIERPKHIEVQILGDYEGNIVHLYERDCSVQ----RRHQKVVEVAPSVSL 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ + +   A    + +G       +FL        +++E+N +
Sbjct: 253 SDELRQRICEAAVKLMKNVGYVNAGTVEFLV--SGNDFYFIEVNPR 296


>gi|150026028|ref|YP_001296854.1| carbamoyl phosphate synthase large subunit [Flavobacterium
           psychrophilum JIP02/86]
 gi|149772569|emb|CAL44052.1| Carbamoyl-phosphate synthase large subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 950

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/312 (14%), Positives = 95/312 (30%), Gaps = 40/312 (12%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39
            V++G      G   E + S        +A ++ G++   I         D D       
Sbjct: 571 VVVLGSGPNRIGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYF 627

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  +  ++ H KP+     L G        +     ++I  T    L  A    + 
Sbjct: 628 EPVFWEHIYDIIRHEKPEGVIVQLGGQTALKLAEKLSKYGIKILGTSFDALDLAEDRGRF 687

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                      P                ++  P +++P       G+ ++   Q +   +
Sbjct: 688 SELLTDLKIPFPQFGIAENADEASALADVLDFPLLVRPSYVLGGQGMKIVINKQELEEHV 747

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +       G++LL++ Y+DG IE     + D         +   +           ++  
Sbjct: 748 IDLLKNIPGNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG---DSNAT 804

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P  +   + ++++        A+   G+    F        V+ +E N +   T    
Sbjct: 805 LPPFNLGEFVMQQIKDHTKKIALALRTVGLINIQFAI--KDDTVYIIEANPRASRT---- 858

Query: 274 FPEMAAYAGYSF 285
            P +A   G  +
Sbjct: 859 VPFIAKAYGEPY 870



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 91/303 (30%), Gaps = 33/303 (10%)

Query: 19  GKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAFN 56
           G   A ++ + G +V  I         D              +S+  +L    + D    
Sbjct: 30  GSQSARSIREEGIEVILINSNPATIMTDPTMADHVYLLPLTTKSIIQILKEHPQIDAVLP 89

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP--S 110
            + G    +  ++A      +   +      + A  ++ D+ + K +++  G+P  P  +
Sbjct: 90  TMGGQTALNLCLEADEKGIWKDFNVKLIGVDVNAIEITEDREKFKNLLNKIGIPQAPAKT 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   +       P VI+P       G  ++ K +     L      +   ++LI++
Sbjct: 150 ATSFLKGKEIAQEFGFPLVIRPSFTLGGTGAAIVYKKEDFDEKLTYGLEMSPIHEVLIDK 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +             K     
Sbjct: 210 ALMGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDTTFQKMRDMA 269

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 270 ILMMRSIGNFAGGCNVQFAVSPDDKEDIVAIEIN--PRVSRSS--ALASKATGYPIAKIA 325

Query: 290 LWM 292
             +
Sbjct: 326 SKL 328


>gi|322435197|ref|YP_004217409.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX9]
 gi|321162924|gb|ADW68629.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium sp.
           MP5ACTX9]
          Length = 1099

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/323 (13%), Positives = 96/323 (29%), Gaps = 44/323 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLA---------- 47
           G S+E +    SG     AL+  G++V  +         D + +    +           
Sbjct: 21  GQSAEFD---YSGTQACKALKAEGYEVVLVNSNPASIMTDPEVADRTYIEPLTTTYVEEI 77

Query: 48  ------------HLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSM 91
                                 + G    +  V      +LE   +    + + A   + 
Sbjct: 78  LRVEVEMLAASGKKGVFAVLPTVGGQTALNLAVDLADSGVLEKYGVELIGAKLEAIKKAE 137

Query: 92  DKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D++  K  ++  G+ +  S  +      +     I  P VI+P       G  +    Q 
Sbjct: 138 DRLLFKDAMNKIGLDMPKSQLVNNVSDGLAFAGKIGFPAVIRPSFTLGGSGGGIAYNRQE 197

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   L +    +   + LIE+ V G +     +     D   I     +F    +     
Sbjct: 198 MTEILSRGIDLSPVSECLIEESVLGWKEYELEVVRDLKDNVIIICSIENFDPMGVHTGDS 257

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +          +          +  +     G S   F  +P + ++  +E+N  P ++
Sbjct: 258 ITVAPAQTLTDREYQAMRDAAIAVIREIGVETGGSNVQFAVNPQNGRMTVIEMN--PRVS 315

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
             S     +   G+   ++   +
Sbjct: 316 RSS--ALASKATGFPIAKIAARL 336



 Score = 41.0 bits (94), Expect = 0.24,   Method: Composition-based stats.
 Identities = 21/173 (12%), Positives = 61/173 (35%), Gaps = 10/173 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
            + +  P +++P        +++   D+++   +  +  ++    +LI+ +  D  E   
Sbjct: 715 ANRVGYPVLVRPSYVLGGRAMVIAYDDEAVIKYMSTAIEYSQERPVLIDHFLEDATECDV 774

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D    V    +   +           +S  +    +  ++ + ++       +A+ 
Sbjct: 775 DALCDGDDVVIAGIMQHIEEAGIHSG---DSSCVLPSVDLTDEVKETIRTYTRALAKALD 831

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             G+    F       KVF +E+N +   T     P ++   G    ++   +
Sbjct: 832 VIGLVNIQFAI--QRGKVFVIEVNPRASRT----VPYVSKATGVPLAKIASRI 878


>gi|295399674|ref|ZP_06809655.1| pyruvate carboxylase [Geobacillus thermoglucosidasius C56-YS93]
 gi|294978077|gb|EFG53674.1| pyruvate carboxylase [Geobacillus thermoglucosidasius C56-YS93]
          Length = 1147

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKTHDVDAIHPG-YGFLSENIQFARRCREEGIIFIGPNEEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 124 ARHQAKLAGIPVIPGSDGPVHSLEEVVHFAETYGYPIIIKAALGGGGRGMRIVRSKSEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +       +   ++GD   ++  +            + 
Sbjct: 184 EAYERAKSEAKAAFGSDDVYVEKLIERPKHIEVQILGDYEGNIIHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++ + +   A    + +G       +FL        +++E+N +
Sbjct: 240 HQKVVEVAPSVSLSDELRQRICEAAVKLMKNVGYVNAGTVEFLVSGDD--FYFIEVNPR 296


>gi|312111807|ref|YP_003990123.1| pyruvate carboxylase [Geobacillus sp. Y4.1MC1]
 gi|311216908|gb|ADP75512.1| pyruvate carboxylase [Geobacillus sp. Y4.1MC1]
          Length = 1147

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKTHDVDAIHPG-YGFLSENIQFARRCREEGIIFIGPNEEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 124 ARHQAKLAGIPVIPGSDGPVHSLEEVVHFAETYGYPIIIKAALGGGGRGMRIVRSKSEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +       +   ++GD   ++  +            + 
Sbjct: 184 EAYERAKSEAKAAFGSDDVYVEKLIERPKHIEVQILGDYEGNIIHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++ + +   A    + +G       +FL        +++E+N +
Sbjct: 240 HQKVVEVAPSVSLSDELRQRICEAAVKLMKNVGYVNAGTVEFLVSGDD--FYFIEVNPR 296


>gi|86450127|gb|ABC96252.1| carbamoylphosphate synthetase [Poecilobothrus nobilitatus]
          Length = 1276

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSTGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRSGIFSKYNVKIMGTPIQSIIETEDRKIFAERVAQIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG      ++ +    L   ++ H +QL++++
Sbjct: 488 VYSVKEALDAATKLGYPVMARAAFSLGGLGSGFANNEKELQE--LAQQAFAHSNQLIVDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGIVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|302141925|emb|CBI19128.3| unnamed protein product [Vitis vinifera]
          Length = 2173

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     V     +      + S  ++  P +IK   GG   G
Sbjct: 176 PTLPWSGSHVRIPSESCLVTIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 235

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  +   +       L   ++ D   +V  +       
Sbjct: 236 IRKVHNDDEVKALFKQVQGEVPGSPIFTMKVASQSRHLEVQLLCDQHGNVAALHSRDCSV 295

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    + +   G +  ++L+   + + ++
Sbjct: 296 QRRHQKIIEEGPITVAPH----ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 351

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 352 LELNPR 357


>gi|259015971|gb|ACV89268.1| putative CAD trifunctional protein [Ametastegia equiseti]
          Length = 398

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 79  SGSQAIKALQEEKIQTLLINPNIATVQTSKGMADKVYFLPIIPEYVEQVIRSERPDGVLL 138

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     + E   I    + I +   + D+     +       V    +
Sbjct: 139 TFGGQTALNCGVELQRMGVFEKYNIKILGTPIQSIIETEDRKLFAERVNEIGEKVAPSAA 198

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 199 VYDIQEVVEAAEKLGYPVMARAAFSLGGLGSGFANSKEEL--KILAQQALAHSNQLIIDK 256

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 257 SLKGW-KEVEYEVVRDSFDNCITVCNMENVDPLGIHTGESIVVAPSQTLNNKEYNMLRTT 315

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P+S + + +E+N +  ++  S     +   GY    +  
Sbjct: 316 AINVIRHFGVVGECNIQYALNPISEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 371

Query: 291 WM 292
            +
Sbjct: 372 KL 373


>gi|255263989|ref|ZP_05343331.1| carbamoyl-phosphate synthase, large subunit [Thalassiobium sp.
           R2A62]
 gi|255106324|gb|EET48998.1| carbamoyl-phosphate synthase, large subunit [Thalassiobium sp.
           R2A62]
          Length = 1116

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/321 (11%), Positives = 93/321 (28%), Gaps = 50/321 (15%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++                    +    V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGMADATYIEPITPDVVAQIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKYNVEMIGAKRDAIEMAEDRKLFREAMGRLGIENPKATI 148

Query: 113 VN---------------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           V                         MD+   I  P +I+P       G  V    +   
Sbjct: 149 VTAPTKNKDAIRVTDKFDINAGLSAAMDALEEIGLPAIIRPAFTLGGTGGGVANNREEYE 208

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                    +   Q+LI++ + G +     +   + D   I     +     +      +
Sbjct: 209 HFCRSGMEASPMAQILIDESLLGWKEYEMEVVRDTADNAIIICAIENVDPMGVHTGDSIT 268

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                     +          +  +     G S   +  +P   ++  +E+N  P ++  
Sbjct: 269 VAPALTLTDKEYQIMRNHSINVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRS 326

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
           S     +   G+   ++   +
Sbjct: 327 S--ALASKATGFPIAKIAAKL 345



 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 106/317 (33%), Gaps = 51/317 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   +         D D S 
Sbjct: 604 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDYDTSD 656

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 657 RLYFEPLTFEHVLEILRVEQEKGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 716

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V   G+      + +       +   I  P VI+P        + +++ 
Sbjct: 717 LAEDRERFQDLVEKLGLKQPGGAIASTDAQALAAAGDIGFPLVIRPSYVLGGRAMEIVRD 776

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE+    + D +       +   +       
Sbjct: 777 MAQLERYIAEAVVVSGDSPVLLDSYLTGAIEIDVDAICDGTSVHVAGIMQHIEEAG---V 833

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++        A+   G+    F     + +++ +E+N +
Sbjct: 834 HSGDSACSLPPYSLSAETIAELRVQTEKLALALNVVGLMNIQFAV--KNGEIYLIEVNPR 891

Query: 266 PGMTPVSIFPEMAAYAG 282
              T     P +A   G
Sbjct: 892 ASRT----VPFVAKAVG 904


>gi|225459364|ref|XP_002285808.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 2257

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     V     +      + S  ++  P +IK   GG   G
Sbjct: 176 PTLPWSGSHVRIPSESCLVTIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 235

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  +   +       L   ++ D   +V  +       
Sbjct: 236 IRKVHNDDEVKALFKQVQGEVPGSPIFTMKVASQSRHLEVQLLCDQHGNVAALHSRDCSV 295

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    + +   G +  ++L+   + + ++
Sbjct: 296 QRRHQKIIEEGPITVAPH----ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 351

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 352 LELNPR 357


>gi|152991751|ref|YP_001357472.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurovum sp.
           NBC37-1]
 gi|172048737|sp|A6Q6K6|PURT_SULNB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|151423612|dbj|BAF71115.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurovum sp.
           NBC37-1]
          Length = 387

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 76/273 (27%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D      V  ++   +P      +
Sbjct: 23  GKEVAIEAQRLGIEVIAVDKYENAPAHLVANRSYAIDMQDKSAVLELIEKEQPSYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L +A      +      +  +    +                  +       
Sbjct: 83  E-AISISALFEAEKRGFHVIPNAEAVNKTMNRKNIRVFAAETLDLKTSGYEFVTTLDGLK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  + K    I      +         LI +     +  
Sbjct: 142 AAGERIGFPCVIKPVMSSSGHGQSIAKTANDIERSWEIAKEARGDASELIVEEFVPFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P ++  +  K+ Q +A      +
Sbjct: 202 ITLLTVRNETGTTFCEPIGHV-----QKDGDFILSWQPMQMSPEALKKAQEIAKAVTDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G RGI   +F       +V++ E++ +P   GM
Sbjct: 257 GGRGIFGVEFFV--KDEEVYFSELSPRPHDTGM 287


>gi|147772303|emb|CAN64563.1| hypothetical protein VITISV_038234 [Vitis vinifera]
          Length = 2178

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     V     +      + S  ++  P +IK   GG   G
Sbjct: 146 PTLPWSGSHVRIPSESCLVTIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 205

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  +   +       L   ++ D   +V  +       
Sbjct: 206 IRKVHNDDEVKALFKQVQGEVPGSPIFTMKVASQSRHLEVQLLCDQHGNVAALHSRDCSV 265

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    + +   G +  ++L+   + + ++
Sbjct: 266 QRRHQKIIEEGPITVAPH----ETVKKLEQAARRLAKCVNYVGAATVEYLYSMETGEYYF 321

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 322 LELNPR 327


>gi|114767027|ref|ZP_01445935.1| acetyl-CoA carboxylase [Pelagibaca bermudensis HTCC2601]
 gi|114540811|gb|EAU43875.1| acetyl-CoA carboxylase [Roseovarius sp. HTCC2601]
          Length = 451

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/221 (12%), Positives = 66/221 (29%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFMSENARFVQMVEDHGLTFIGPSAQHIRVMGDKITAKDTMKELGVPCVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +               P +IK   GG   G+ V   +  +      + +     + + +
Sbjct: 137 GVPDVEAAKQIGRDFGYPVIIKATAGGGGRGMKVANSEAEMERAFQTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD   +   +            +             I  +  
Sbjct: 197 VYIEKYLQRPRHIEIQVFGDGKGNAVHLGERDCSLQ----RRHQKVFEEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +   A   +   G    +FL+     + +++E+N +
Sbjct: 253 ARIGAVCAKAVGDLKYSGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|9988775|gb|AAG10786.1| carbamoyl phosphate synthetase II [Plasmodium chabaudi adami]
          Length = 1418

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/296 (9%), Positives = 85/296 (28%), Gaps = 33/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G  V  ++ +                       V  ++   KPD    
Sbjct: 449 SGTQAIKSLKECGIYVILVNPNIATVQTSKGLADKVYFLPVNCEFVEKIIKKEKPDFILC 508

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G            + +L+        + + +  ++ ++    + +      +    S
Sbjct: 509 TFGGQTALNCALMLEQKKVLKKNNCLALGTSLESILITENRSTFAEKLKEINEIIAPYGS 568

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++  + I  P +++       L    I  ++ +     +       +++ I++
Sbjct: 569 AKNVEEAIEVANNIGYPILVRTTFSLGGLNSSFINNEEELIEK-CKEIFLQTDNEIFIDK 627

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +     +                 + Y + + +
Sbjct: 628 SLKGWKEIEYELLRDNKNNCIAICNMENIDPLGIHTGDSIVVAPSQTLSNYE-YYKFREI 686

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A      +   G     F  +P + +   +E+N +  ++  S     +   GY   
Sbjct: 687 ALKVITHLNIIGECNIQFGINPKTGEYCIIEVNAR--LSRSS--ALASKATGYPLA 738


>gi|291166511|gb|EFE28557.1| pyruvate carboxylase [Filifactor alocis ATCC 35896]
          Length = 1142

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 75/282 (26%), Gaps = 37/282 (13%)

Query: 19  GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48
                 AL + G +   I                                   +  +   
Sbjct: 18  AIRIFRALTELGIRTVGIYSKEDKYSLFRTKADESYLIGEDKGPIDAYLDMASIIQIAKD 77

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D      +G   E+     +     I +            DK+ +K V   CGVP  
Sbjct: 78  KNVDAIHPG-YGFLSENPKFAQMCLDNGIEFIGPTPYTMLQMGDKISAKSVALECGVPTI 136

Query: 109 PSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           P             D    I  P ++K   GG   G+ ++   + +  +   + S +   
Sbjct: 137 PGHQKPIKNSLEAKDIAEKIGYPVILKAANGGGGRGMRIVNSVEEMENEFKNAMSESIKA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 +++        +    L      +         L+          P+    + I
Sbjct: 197 FDSDVIFMEKYLHHPKHIEVQILGDKLGNIVHLFERDCSLQRRHQKVIEFAPSISLDESI 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +++   +    + +        +FL D  S   +++E+N +
Sbjct: 257 KQKILSDSVKLAKYVNYISAGTMEFLVD-QSGNYYFIEMNPR 297


>gi|238028208|ref|YP_002912439.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia glumae
           BGR1]
 gi|237877402|gb|ACR29735.1| Phosphoribosylglycinamide formyltransferase 2 [Burkholderia glumae
           BGR1]
          Length = 404

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 79/270 (29%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYANAPGHQVAHRAHVIDMTDAAALRALVDAEQPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSRYAFAQSFDAFR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K D  +      +      +  ++++E +VD   
Sbjct: 147 AAVAAIGCPCVVKPVMSSSGKGQSVVKGDADLEPAWQHAMAGGRVNHGRVIVEGFVDFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             L+ +        P  +     +  +++A     
Sbjct: 207 EITQLTVRAIDPASGETRTYFCDPVGHLQVAGDYVESWQPQPMSEVARERSRQIAHQVTT 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +        +V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDQVWFSEVSPRP 294


>gi|226314884|ref|YP_002774780.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Brevibacillus brevis NBRC 100599]
 gi|226097834|dbj|BAH46276.1| arginine-specific carbamoyl-phosphate synthase large chain
           [Brevibacillus brevis NBRC 100599]
          Length = 1080

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/171 (14%), Positives = 51/171 (29%), Gaps = 12/171 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI---EQYVDGIEL 177
              I  P +++P       G++V+     +   L    +            ++YV G E 
Sbjct: 700 AEEIGFPVLMRPSYVIGGQGMVVVHNIDELQATLHDWLNHPEMSMFFPLLVDKYVPGKEA 759

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +        +           +        +  DI  ++        + 
Sbjct: 760 EVDAVCDGQSVIIPGIFQHVERAGIHSG---DSVALFPAPHLTDDIKYKIASYTEAIAKE 816

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   G+    F+ D  +  V+ LE+N +   T     P  +   G    +L
Sbjct: 817 MEAVGLINIQFVIDGET--VYVLEVNPRASRT----VPITSKVTGIPMVQL 861



 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 49/301 (16%), Positives = 104/301 (34%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L++AG +V  ++ +                      SV  ++A  +PD     
Sbjct: 30  GAQACLSLKEAGVQVVLVNNNPATIMTDEQVADKVYLEPLTVESVTAIIAKERPDGLLPT 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPSI 111
           L G  G +  V      +LE   +    + + A     D+   KQ++      VP   ++
Sbjct: 90  LGGQTGLNLAVSLAEAGVLEKYSVELLGTPLAAIQNGEDRELFKQLMQQIGEPVPESDTV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 ++  + I  P +++P       G  +   + S+        + +   Q+LIE+ 
Sbjct: 150 ESVEAAIEFANAIGYPVIVRPAYTLGGAGGGIAGDEASLRKVAAGGIAASPIGQVLIERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G             + T I V   +       ++  +        +    Y+ ++ ++
Sbjct: 210 VKGW-KEIEYEVMRDANDTCIIVCNMENLDPVGIHTGDSIVVAPSQTLTDRQYQMLRSVS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +++G  G     F  DP S +   +E+N  P ++  S     +   GY    +   
Sbjct: 269 TKVIRSLGVVGGCNIQFALDPHSDRYVLIEVN--PRVSRSS--ALASKATGYPIARIAAK 324

Query: 292 M 292
           +
Sbjct: 325 L 325


>gi|148711651|gb|ABR02252.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--RYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A  AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKVTMDIPAKISDDVVAVMRQNAETAFCAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|57528264|ref|NP_001009653.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Rattus norvegicus]
 gi|81882966|sp|Q5I0C3|MCCA_RAT RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|56971894|gb|AAH88473.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Rattus
           norvegicus]
          Length = 715

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +I+ ++     L  +       +N    L+ +     
Sbjct: 190 HAGKIGYPVMIKAIRGGGGKGMRIIRSEKEFQEQLESARREAKKSFNDDAMLIEKFVDTP 249

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ + +   A  A
Sbjct: 250 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIDPEVRRRLGEAAVRA 305

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 306 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 352

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 353 EWQLRIAAGEK 363


>gi|90424366|ref|YP_532736.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisB18]
 gi|90106380|gb|ABD88417.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodopseudomonas palustris
           BisB18]
          Length = 451

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILAEHNLHFIGPKSEHIRLMGDKIEAKKTARRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      M     I  P ++K   GG   G+ V + +  + L L  + +        
Sbjct: 135 EGAVGPEDDAMAIAKAIGFPVLVKAASGGGGRGMKVAQTEADLMLALSTAGNEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L                L+          P+ +   +   +
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPVLSAEARAK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +      A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGATCAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|323139045|ref|ZP_08074104.1| carbamoyl-phosphate synthase, large subunit [Methylocystis sp. ATCC
           49242]
 gi|322395705|gb|EFX98247.1| carbamoyl-phosphate synthase, large subunit [Methylocystis sp. ATCC
           49242]
          Length = 1110

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 90/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDL--- 53
           SG     AL+  G+++  +         D D              V  V+   +  +   
Sbjct: 29  SGTQACKALKAEGYRIVLVNSNPATIMTDPDLAHRTYVEPITPEFVAKVIEKERYAVPGG 88

Query: 54  --AFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G              +L+  ++    +   A   + D+   ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLEKMGVLKKFDVEMIGATAHAIDKAEDRELFREAMTKIGLET 148

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  +       +    I  P +I+P       G  +          + +    +  ++
Sbjct: 149 PRSHHIKTLPQALEALDDIGLPAIIRPSFTLGGTGGGIAYNKAEFIEIVERGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLVEESVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  DP + ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVDPRTGRMIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAARL 331



 Score = 42.2 bits (97), Expect = 0.097,   Method: Composition-based stats.
 Identities = 13/80 (16%), Positives = 28/80 (35%), Gaps = 6/80 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +P +    ++        A+G  G+    F       +++ LE+N +   T  
Sbjct: 830 CSLPPRSLPPETILALEEQTKSLAMALGVVGLMNVQFAL--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLW 291
              P +A   G    ++   
Sbjct: 886 --VPFVAKVVGVPVAKIAAR 903


>gi|291279616|ref|YP_003496451.1| propionyl-CoA carboxylase subunit alpha [Deferribacter
           desulfuricans SSM1]
 gi|290754318|dbj|BAI80695.1| propionyl-CoA carboxylase, alpha subunit [Deferribacter
           desulfuricans SSM1]
          Length = 506

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 57/183 (31%), Gaps = 21/183 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K + GG   G+ +++K + +      + S         E Y++   +   
Sbjct: 149 ADEIGYPIMLKAVHGGGGKGMRLVEKPEDLESAFRTAQSEALNAFGSSEVYIEKFIVQPH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          P   I  +   ++  +A  A + +G
Sbjct: 209 HVEIQVMGDMHGNALHFFERECSIQRRHQKVIEEAPSPFINDETRAKMYEVAVKAVKKLG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+     +  ++LE+N +              +       G    +L+  M+
Sbjct: 269 YYSAGTLEFIV-GADQNFYFLEMNTR----------LQVEHPVTELITGV---DLVNQMI 314

Query: 294 EDA 296
             A
Sbjct: 315 RVA 317


>gi|254796607|ref|YP_003081443.1| carbamoyl-phosphate synthase, large subunit [Neorickettsia risticii
           str. Illinois]
 gi|254589851|gb|ACT69213.1| carbamoyl-phosphate synthase, large subunit [Neorickettsia risticii
           str. Illinois]
          Length = 1075

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L   G+KV  I         D D +  + +               +PD    
Sbjct: 27  SGTQACRILRKCGYKVVLINPNPATIMTDPDTADVVYIEPINIGIIESIIAIERPDKLLP 86

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +  ++           +E+      ++ +A                VP    
Sbjct: 87  TVGGQTALNIAIELFDSGILSRYGVELIGASKRVIENAEKRSIFNQIMSEIGLQVPKNTM 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P      LG  V          +     ++   ++ +++
Sbjct: 147 VTHVNEIEKAFEFIGVPAIIRPSFTLGGLGGGVATTKFDFFTIINNGLKFSPVSEVQVDE 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S+  + I     +     +      +   +   +  + Y+E++  
Sbjct: 207 SVLGWQEFELEVVRDSVGNSIIVCSIENTDPMGVHTGDSVTVSPI-LTLRDEEYQEMRDA 265

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           AF     IG   G +   F  +P + ++  +E+N  P ++  S     +   GY   ++ 
Sbjct: 266 AFKVLDCIGVTTGGANVQFALNPENGELRVIEMN--PRVSRSS--ALASKATGYPIAKVA 321

Query: 290 LWM 292
             +
Sbjct: 322 AQL 324



 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/299 (14%), Positives = 92/299 (30%), Gaps = 44/299 (14%)

Query: 12  REVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--- 59
             +S         A+++ G++   +         D D S  L    +  +   +++    
Sbjct: 581 HAIS---------AIKELGYEAIMVNCNPETVSTDYDISDKLYFTPMNVESVLDIVERES 631

Query: 60  -------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                        G              + I  T    + +A       S         P
Sbjct: 632 EKGELLGVVLQCGGQTPLKLARAMHENNVRIIGTGFASINTAEDRKSFNSLVAELEMLQP 691

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +       ++   I  P +++P        + +I  D  +   L + +   +G  L
Sbjct: 692 KNAIVFARGEIAENVKKIGFPLIVRPSYVLGGESMQIIYDDAMLENYLERHTQLFNGSSL 751

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L++++ V+ +EL    + D         +   +       +S  ++    P K+  +I +
Sbjct: 752 LLDKFLVNALELDVDAISDGEDVYIAGIMEHIEEAG---VHSGDSAFVFPPQKLSEEILE 808

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            ++        A+   G     F+ D     V+ LE+N +   T     P +A   G  
Sbjct: 809 RIKSCTKKVAIALNVVGFLNIQFVIDGRD--VYVLEVNPRSSRT----IPFVAKALGIP 861


>gi|254453078|ref|ZP_05066515.1| biotin carboxylase [Octadecabacter antarcticus 238]
 gi|198267484|gb|EDY91754.1| biotin carboxylase [Octadecabacter antarcticus 238]
          Length = 461

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 85/286 (29%), Gaps = 38/286 (13%)

Query: 13  EVSLSSGKACASALEDAGF--------------------KVSQIDVDRS---------VG 43
           E+S+        A ++ G                     +   +   +S         + 
Sbjct: 13  EISVR----IIRAAKELGITTIQAYSEGDAEMLSVKLADEAICVGPAKSKDSYLNVVRLM 68

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
             +     D      +G   E       +E   I +            DK+ +++   + 
Sbjct: 69  QAIKDSGADAVHPG-YGFLSESPEFAHAIESAGITFVGPTAATIERMGDKVEARKAAEAA 127

Query: 104 GVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           GVPV P     I            I  P +IK   GG   GI V   +  +     Q+ +
Sbjct: 128 GVPVVPGSKGRIETVDDAAQIASDIGYPVMIKAAAGGGGRGIRVADNEGELRSLAPQAQA 187

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                      Y++    +   +    L     AV   +      +             +
Sbjct: 188 EAEAAFGDGGLYLERAVRSPRHIEVQILGDGTNAVHCFERECSLQRRRQKVWEEAGAVCL 247

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  + + + A    +A+  RG    ++L+D  + + F++E+N +
Sbjct: 248 DEETRQTLCKSAVALAKAVNYRGAGTLEYLYDEATNEFFFIEMNTR 293


>gi|119471940|ref|XP_001258249.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Neosartorya fischeri NRRL 181]
 gi|119406401|gb|EAW16352.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Neosartorya fischeri NRRL 181]
          Length = 2256

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 505 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 564

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 565 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDREFFARSMESINEKCAKSASAS 624

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG         +    L + ++    Q+LIE+ +
Sbjct: 625 NLEEALRVVEDIGFPVIVRAAYALGGLGSGFADNMDQLKE--LCTKAFAVSPQVLIEKSM 682

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 683 KGW-KEIEYEVVRDCQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 741

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 742 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 791


>gi|306841494|ref|ZP_07474194.1| pyruvate carboxylase [Brucella sp. BO2]
 gi|306288458|gb|EFM59814.1| pyruvate carboxylase [Brucella sp. BO2]
          Length = 1163

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRSEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L  +   ++     ++A    
Sbjct: 221 HVEVQILGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLNDEQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|254693894|ref|ZP_05155722.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 3 str. Tulya]
 gi|261214183|ref|ZP_05928464.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
 gi|260915790|gb|EEX82651.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 3 str. Tulya]
          Length = 667

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|17987083|ref|NP_539717.1| propionyl-COA carboxylase alpha chain, mitochondrial [Brucella
           melitensis bv. 1 str. 16M]
 gi|62290100|ref|YP_221893.1| propionyl-CoA carboxylase subunit alpha [Brucella abortus bv. 1
           str. 9-941]
 gi|82700023|ref|YP_414597.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis biovar
           Abortus 2308]
 gi|189024338|ref|YP_001935106.1| Propionyl-COA carboxylase alpha chain [Brucella abortus S19]
 gi|225852685|ref|YP_002732918.1| propionyl-coenzyme A carboxylase subunit alpha [Brucella melitensis
           ATCC 23457]
 gi|237815606|ref|ZP_04594603.1| propionyl-CoA carboxylase, alpha subunit [Brucella abortus str.
           2308 A]
 gi|254697544|ref|ZP_05159372.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 2 str. 86/8/59]
 gi|254730439|ref|ZP_05189017.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           abortus bv. 4 str. 292]
 gi|256044840|ref|ZP_05447744.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis bv. 1 str. Rev.1]
 gi|256113745|ref|ZP_05454549.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis bv. 3 str. Ether]
 gi|256263824|ref|ZP_05466356.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|260546649|ref|ZP_05822388.1| propionyl-COA carboxylase subunit alpha [Brucella abortus NCTC
           8038]
 gi|260565559|ref|ZP_05836043.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260758147|ref|ZP_05870495.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260761973|ref|ZP_05874316.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|265991267|ref|ZP_06103824.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|265995103|ref|ZP_06107660.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 3
           str. Ether]
 gi|17982742|gb|AAL51981.1| propionyl-CoA carboxylase alpha chain [Brucella melitensis bv. 1
           str. 16M]
 gi|62196232|gb|AAX74532.1| PccA, propionyl-CoA carboxylase, alpha subunit [Brucella abortus
           bv. 1 str. 9-941]
 gi|82616124|emb|CAJ11167.1| Biotin/lipoyl attachment:Biotin-requiring enzyme, attachment
           site:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl [Brucella melitensis biovar
           Abortus 2308]
 gi|189019910|gb|ACD72632.1| Propionyl-COA carboxylase alpha chain [Brucella abortus S19]
 gi|225641050|gb|ACO00964.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis ATCC 23457]
 gi|237788904|gb|EEP63115.1| propionyl-CoA carboxylase, alpha subunit [Brucella abortus str.
           2308 A]
 gi|260095699|gb|EEW79576.1| propionyl-COA carboxylase subunit alpha [Brucella abortus NCTC
           8038]
 gi|260151627|gb|EEW86721.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 1
           str. 16M]
 gi|260668465|gb|EEX55405.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 4 str. 292]
 gi|260672405|gb|EEX59226.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 2 str. 86/8/59]
 gi|262766216|gb|EEZ12005.1| carbamoyl-phosphate synthase subunit L [Brucella melitensis bv. 3
           str. Ether]
 gi|263002051|gb|EEZ14626.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella melitensis bv. 1 str. Rev.1]
 gi|263093953|gb|EEZ17887.1| propionyl-COA carboxylase subunit alpha [Brucella melitensis bv. 2
           str. 63/9]
 gi|326409207|gb|ADZ66272.1| Propionyl-COA carboxylase alpha chain [Brucella melitensis M28]
 gi|326538916|gb|ADZ87131.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella
           melitensis M5-90]
          Length = 667

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|332976192|gb|EGK13056.1| acetyl-CoA carboxylase, biotin carboxylase [Desmospora sp. 8437]
          Length = 448

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V+  +  +      +             +++    +  
Sbjct: 148 AARIGYPVMLKASAGGGGIGMEVLHSEADLEKAFTSARGRAQAYFGDGTLFMERFIESPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +        +            ++  +       P+  I  +  + + R A  A +A+G
Sbjct: 208 HVEVQVFADGKGRTLHLFERECSVQRRNQKVVEESPSPSIRPETREALCRAAVQAAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL DP     F+LE+N +
Sbjct: 268 YTGAGTVEFLVDP-GEDFFFLEMNTR 292


>gi|254449296|ref|ZP_05062742.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           HTCC5015]
 gi|198261105|gb|EDY85404.1| acetyl-CoA carboxylase, biotin carboxylase [gamma proteobacterium
           HTCC5015]
          Length = 451

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 46/150 (30%), Gaps = 3/150 (2%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +IK   GG   G+ V+  + S+   +  + +         E Y++   
Sbjct: 148 NHALARDIGYPVIIKAAAGGGGRGMRVVHSEASLNSAIATTRAEAEAAFGSGELYMEKFL 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAH 235
                +    L                ++          PA    +  +         A 
Sbjct: 208 GHPRHIEIQVLADQHGNAVHLGERDCSMQRRHQKVIEEAPAPGITEQQRHDIGQRCVEAC 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Q IG  G    +FLF     + +++E+N +
Sbjct: 268 QRIGYVGAGTFEFLF--QDGEFYFIEMNTR 295


>gi|86450147|gb|ABC96262.1| carbamoylphosphate synthetase [Hormopeza sp. JKM-2006]
          Length = 1296

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVRIMGTPIQSIIETEDRKIFAERVAKIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVREALDAAEKLGYPVMARAAFSLGGLGSGFANNQEEL--KILAQQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            +    I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDVYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|297170266|gb|ADI21303.1| biotin carboxylase [uncultured gamma proteobacterium HF0010_09F21]
          Length = 447

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 35/272 (12%), Positives = 79/272 (29%), Gaps = 31/272 (11%)

Query: 18  SGKACASALEDA-GF-----KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNF 62
           S  +  S ++          +   I    +    L              D  +    G  
Sbjct: 29  SVASVYSTIDRDQKHLKLSDEAICIGPPETKDSYLNEAAIISAAELSGADAIYPGF-GFL 87

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
            E+             +        A+  DK+++K++  S  +PV P       T +   
Sbjct: 88  AENASFAEKCRESGFKFIGPDPEVIAIMGDKIKAKELAKSLNIPVVPGYEGEISTENEAI 147

Query: 123 L----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVD 173
                I  P +IK   GG   G+ V+     +   +  + +        G   + +    
Sbjct: 148 KTVEEIGYPVIIKASAGGGGRGMRVVNSSDELWQSIQSAQNEAELAFGDGKIFIEKYLKK 207

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   + G+   +   +            K         +  +   +I      L+  
Sbjct: 208 PRHIEVQIFGNGKGEAVHLFTRDCSLQRKYQKIVEEAPALNIDNQKLEEIQN----LSVE 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +   G    +FL+   +   +++E+N +
Sbjct: 264 ACKKLNYEGAGTIEFLY--ENNDFYFIEMNTR 293


>gi|315503233|ref|YP_004082120.1| carbamoyl-phosphate synthase, large subunit [Micromonospora sp. L5]
 gi|315409852|gb|ADU07969.1| carbamoyl-phosphate synthase, large subunit [Micromonospora sp. L5]
          Length = 1115

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 44/311 (14%), Positives = 91/311 (29%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVV-----------S 101
            L G    +         +LE   +    + I A     D+   K++V            
Sbjct: 89  TLGGQTALNTAVALHEAGVLEKYGVELIGANIEAINRGEDRQLFKEIVAKAGVRLGLDDP 148

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           S  VP            ++   +  P VI+P      LG  +    + +        + +
Sbjct: 149 SALVPRSRVCHSMDEVRETVADLGLPVVIRPSFTMGGLGSGMAHTGEDLERIAGSGLAAS 208

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 209 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVTVAPSMTLTDR 268

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +  +       +  +     G     F  +P   ++  +E+N  P ++  S     +   
Sbjct: 269 EYQRLRDLGIAVLREVGVDTGGCNIQFAVNPADGRIVVIEMN--PRVSRSS--ALASKAT 324

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 325 GFPIAKIAAKL 335


>gi|222150234|ref|YP_002551191.1| pyruvate carboxylase [Agrobacterium vitis S4]
 gi|221737216|gb|ACM38179.1| pyruvate carboxylase [Agrobacterium vitis S4]
          Length = 1153

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 155 MAGEIGYPLMLKASWGGGGRGMRVIRSESDLAREVTEAKREAKAAFGKDEVYLEKLVENA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAI 238
             +    L  T             ++  +       PA    +  ++     +    +A 
Sbjct: 215 RHVESQILGDTHGNAVHLFERDCSVQRRNQKVVERAPAPYLSEEQRQELAAYSLKIARAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    ++L D  + K +++E+N +
Sbjct: 275 GYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|33326388|gb|AAQ08609.1| pyruvate carboxylase [Agrobacterium vitis]
          Length = 1155

 Score = 52.6 bits (124), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 155 MAGEIGYPLMLKASWGGGGRGMRVIRSESDLAREVTEAKREAKAAFGKDEVYLEKLVENA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAI 238
             +    L  T             ++  +       PA    +  ++     +    +A 
Sbjct: 215 RHVESQILGDTHGNAVHLFERDCSVQRRNQKVVERAPAPYLSEEQRQELAAYSLKIARAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    ++L D  + K +++E+N +
Sbjct: 275 GYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|330686001|gb|EGG97624.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU121]
          Length = 452

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSHESIQKMGIKDVAKAEMIKANVPVVPGSEGLVHNI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  +   V         ++          P+ I  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILSEETRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    K +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLNDDKFYFMEMNTR 292


>gi|310789375|gb|EFQ24908.1| urea carboxylase [Glomerella graminicola M1.001]
          Length = 1241

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 75/247 (30%), Gaps = 11/247 (4%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           AL       +  D+  ++  V      D  F   +G   E+      +    + +     
Sbjct: 64  ALRGNK---TYTDISDAILDVCRSTGADAVFPG-YGFLSENVAFAEAVATAGLTFIGPSS 119

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGI 141
            +      K  ++ +  +  VPV P    +      ++    +  P ++KP  GG  +G+
Sbjct: 120 ASIRAMGLKHEARSIAQAVNVPVVPGTSLLSSAHEAIEGAKRLGFPVILKPTGGGGGMGL 179

Query: 142 IVIKKDQSIPLDLLQSSSWNH---GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            +   +Q +P       S       +  +  +          V    +         +  
Sbjct: 180 QICHDEQDVPKAFATVESRAGALLNNTGVFLEKYYPRFRHIEVQVFGNGTQVVAFGEREC 239

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 +            +    + +++ + A      +  +     +FL D  +   F
Sbjct: 240 SLQRRHQKIIEECPSPF-VERTPGLREKMLQAAVSYASHLKYKSAGTVEFLVDDETADFF 298

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 299 FLEMNTR 305


>gi|288555268|ref|YP_003427203.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
 gi|288546428|gb|ADC50311.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
          Length = 453

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 59/182 (32%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG  +G+ +++ ++        + +           +V+       
Sbjct: 148 ANNIGYPVMLKASAGGGGIGMQIVRNEEECRKAFAGNQTRAQSFFGDGAMFVEKYIANPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L   +            ++          P+    +  +     +A  A +AIG
Sbjct: 208 HIEIQVLADQKGNTVYIWERDCSVQRRHQKVVEEAPSPFLDEETRRQMGEMAVTAAKAIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  + L D  +++ ++LE+N       P    +S              +L+ W ++
Sbjct: 268 YANAGTIECLVDE-NKEFYFLEMNTRLQVEHPVTEEISGL------------DLVEWQLK 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|317130876|ref|YP_004097158.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
 gi|315475824|gb|ADU32427.1| carbamoyl-phosphate synthase, large subunit [Bacillus
           cellulosilyticus DSM 2522]
          Length = 1086

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 46/300 (15%), Positives = 92/300 (30%), Gaps = 32/300 (10%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGLVL--------------AHLKPDLAFNV 57
           G     AL++ G +V  ++        D+SV   +                  PD     
Sbjct: 30  GTQACLALKEEGIEVVLVNNNPATIMTDQSVADQVYIEPLNIETIEKIIKIENPDGMIGT 89

Query: 58  LHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  V+           + +  T    +      +K R+  +     +P    I
Sbjct: 90  LGGQTGLNLTVELYESGILDKYDVTLLGTSVQSIQKGEDREKFRNLMLEIGEPIPESSII 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                       I  P +I+P       G      D+ +   L Q  + +   Q+LIE+ 
Sbjct: 150 EDMESGFHFVKEIGYPVIIRPAYTLGGAGGGFATNDEELEAILKQGLTLSPIHQVLIEKS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G             + T   V   +       ++  +        +    Y+ ++  +
Sbjct: 210 IKGW-KEVEYEVMRDENDTCTIVCNMENMDPVGVHTGDSIVVAPSQTLSDVQYQMLRDSS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G     F  +P S + + +E+N  P ++  S     +   GY    +   
Sbjct: 269 LKVIRALNVVGGCNIQFALEPQSNQYYIIEVN--PRVSRSS--ALASKATGYPIARIATK 324



 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/299 (13%), Positives = 94/299 (31%), Gaps = 37/299 (12%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
            A A++  G++   ++ +                       +  V+   K +       G
Sbjct: 581 AAKAVKKKGYEAIVMNNNPETVSTDYSIADRLYFEPLALEDILAVVEKEKVEGVLVQFGG 640

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +   E +++  T + ++      ++  +             +I      + S
Sbjct: 641 QTAINLANELEAEGVKVLGTSNEVIDKLEDREQFYALLNDLDIPHIAGKTISNPDQLLKS 700

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW--NHGDQLLIEQYVDGIELT 178
            + +  P +I+P        + +   D  +   L +           LL+++Y+ G+E  
Sbjct: 701 ANELEYPVLIRPSYVIGGQSMFICYNDYELNKYLHRIIEDGSERSWPLLVDKYLPGLECE 760

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V+ D    V        +       +S  +     P  I     + V +      +A+
Sbjct: 761 IDVISDGESIVVPGIFEHLEKAG---VHSGDSVALFPPITIGEHTKEMVIKYGERIAKAL 817

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEM-AA---YAGYSFREL 288
              G+    ++       V+ LE+N       P M+ V+  P +  A     G S  +L
Sbjct: 818 PIVGMMNIQYVV--HDETVYVLEVNPRSSRTVPIMSKVTGVPMIEWATNVQLGDSLTDL 874


>gi|222151419|ref|YP_002560575.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Macrococcus
           caseolyticus JCSC5402]
 gi|222120544|dbj|BAH17879.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Macrococcus
           caseolyticus JCSC5402]
          Length = 449

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 51/317 (16%), Positives = 98/317 (30%), Gaps = 50/317 (15%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFNV------------- 57
              AL+D G +   I    DR  +   LA            D   N+             
Sbjct: 16  IIRALKDLGIQSVAIYSEADRDALHTQLADEAYCVGPKQSKDSYLNIPNILMIASSTGCD 75

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E  +I +   G  + +    K  +K+ +   GVPV P    
Sbjct: 76  GIHPGYGFLAENARFAEMCEACQIKFIGPGHQSISKMGIKDVAKKEMIKAGVPVVPGSDG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     +  P +IK   GG   GI V + +Q +      +            
Sbjct: 136 LLEDVESALKLAETMGYPVIIKATAGGGGKGIRVARNEQELRDGYRMTEQEAETAFGNKG 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L                ++          P+    +     + 
Sbjct: 196 LYLEKFIENFRHVEIQVLADQYGNTLHFGERDCTIQRRMQKLVEESPSPYIDEATRYAMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
           + A  A +A+   G    +F++D  +++ +++E+N       P         EM      
Sbjct: 256 QAAINAAKAVNYEGAGTVEFIYDIDAKQFYFMEMNTRIQVEHP-------VTEMVTAT-- 306

Query: 284 SFRELLLWMVEDASCLR 300
              +L+ W ++ A   R
Sbjct: 307 ---DLVRWQIKIAGGER 320


>gi|71281294|ref|YP_267695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Colwellia
           psychrerythraea 34H]
 gi|71147034|gb|AAZ27507.1| acetyl-CoA carboxylase, biotin carboxylase [Colwellia
           psychrerythraea 34H]
          Length = 448

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    D+++  VL   +         PD   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADKNLKHVLLADETICIGKAPAPDSYLNIPAIITAAELT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+++ + +   GVP  P 
Sbjct: 74  NAVAIHPGYGFLAENADFAEQVENSGFAFIGPKAESIRIMGDKVQAIKAMKVAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSW 160
                   +         I  P ++K   GG   G+ V++ +  +   +        + +
Sbjct: 134 SDGPLDDDEEANKAHAKRIGYPIIVKAAGGGGGRGMRVVRSEAELVESIALTKKEAGTIF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +   +   +   +M D       +            +             I 
Sbjct: 194 KNDMVYMEKFLENPRHVEIQIMADGKGAAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++  ++      A   I  RG    +FL+   + + +++E+N +
Sbjct: 250 PEMRAKIGERCCKACVDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|39934479|ref|NP_946755.1| putative urea amidolyase [Rhodopseudomonas palustris CGA009]
 gi|39648328|emb|CAE26848.1| putative urea amidolyase [Rhodopseudomonas palustris CGA009]
          Length = 1182

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   + ++                    Y++       
Sbjct: 147 AARIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARVYLERFVADAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D  +  + + A    Q++ 
Sbjct: 207 HIEVQIFGDGQGNVIALGERDCSLQRRNQKVVEETPAPGISDEMRARLHQAAVALGQSVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D    + ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YESAGTVEFIYDVARDEFYFLEVNTRLQVEHP-VTE--------AVFGV---DLVEWMVR 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 QAAGD 319


>gi|288927305|ref|ZP_06421152.1| carbamoyl-phosphate synthase, large subunit [Prevotella sp. oral
           taxon 317 str. F0108]
 gi|288330139|gb|EFC68723.1| carbamoyl-phosphate synthase, large subunit [Prevotella sp. oral
           taxon 317 str. F0108]
          Length = 1076

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G K   I+ + +                     V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVKTVLINPNIATVQTSEGVADQIYFLPVQPYLVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGVELYQSGVLEKYGVKVLGTPVQAIMNTEDRELFVEKLNEINVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CANIEQARRAAASLGYPVILRAAYALGGLGSGFCDNEEELNK--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|119945894|ref|YP_943574.1| phosphoribosylglycinamide formyltransferase 2 [Psychromonas
           ingrahamii 37]
 gi|171769145|sp|A1SWW0|PURT_PSYIN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|119864498|gb|ABM03975.1| phosphoribosylglycinamide formyltransferase 2 [Psychromonas
           ingrahamii 37]
          Length = 396

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 37/286 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRS 41
           A+L+G  S E    L  GK  A  L+  G +V   D                        
Sbjct: 17  ALLLG--SGE----L--GKEVAIELQRFGIEVIAADSYENAPAMQVAHSSHVVSMLDGEK 68

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   KPD     +     +  L         +P   +  L       +  + + + 
Sbjct: 69  LATIIRAEKPDFIIPEVEAIATDTLLALEAEGFNVVPTARAAKLTMDREGIRRLAAETLG 128

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                           + +   I  P VIKP+   S  G  ++K    +      S    
Sbjct: 129 IKT-SPYIFADSKEEYLSAIEKIGKPCVIKPVMSSSGKGQSIVKSAADLDNAWTYSQVGG 187

Query: 162 HGDQ-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              +  +I +     +    ++   ++D T    P                    P  + 
Sbjct: 188 RSGEGRIIIEGFVPFDYEITLLTVNAVDGTHFCDPIGHRQENG-----DYRESWQPQAMS 242

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               ++ Q +A      +G  G+   +F       +V++ E++ +P
Sbjct: 243 TVALQKAQNIAKKIVTELGGYGLFGMEFFV--KGDQVYFSEVSPRP 286


>gi|91224769|ref|ZP_01260029.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           12G01]
 gi|91190315|gb|EAS76584.1| putative acyl-CoA carboxylase alpha chain [Vibrio alginolyticus
           12G01]
          Length = 682

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/235 (16%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +G      + D      +G   E+  +        I +      A      K +
Sbjct: 61  LDIDAIIGAA-KKWQADAIHPG-YGFLSENPKLAKACSENGIVFIGPPTSAIEAMGSKSQ 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K ++S   VP+ P       +++        I  P ++K  +GG   G+ V+     +P
Sbjct: 119 AKAIMSEANVPLVPGYHGTDNSVEHLLAEAEKIGYPVMLKATQGGGGKGMRVVNSAAEMP 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L +  +           +  ++   L    +                     ++      
Sbjct: 179 LAIDGAQREALSSFGDKQLLIEKCILQPRHVEVQVFADQRGNCVYLSDRDCSIQRRHQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA     ++ K++   A  A QAI   G    +FL D    + +++E+N +
Sbjct: 239 VEEAPAPGLSDELRKQMGEAAVQAAQAIDYVGAGTVEFLLDSR-GQFYFMEMNTR 292


>gi|84499425|ref|ZP_00997713.1| acetyl-CoA carboxylase [Oceanicola batsensis HTCC2597]
 gi|84392569|gb|EAQ04780.1| acetyl-CoA carboxylase [Oceanicola batsensis HTCC2597]
          Length = 449

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 49/148 (33%), Gaps = 11/148 (7%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
            +  P +IK   GG   G+ V + +Q +      + S     + + +  + +       +
Sbjct: 150 EMGYPVIIKATAGGGGRGMKVARSEQELESAFQNARSEAKAAFGNDEVYIEKYLTTPRHI 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD       +            +             I  +   E+ R+   A   
Sbjct: 210 EIQVFGDGKGQAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEERAEIGRVCADAVAR 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL+   + + +++E+N +
Sbjct: 266 INYAGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|326387934|ref|ZP_08209540.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
 gi|326207980|gb|EGD58791.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           nitrogenifigens DSM 19370]
          Length = 461

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V      +   + Q+ +           Y++       
Sbjct: 159 AEEIGYPVIIKAASGGGGRGMKVCNGPDELERLMQQAGNEAKAAFGDATVYLEKYLGNPR 218

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P   I  +  + +  +   A   +G
Sbjct: 219 HIEFQIFGDGNGKAIHLGERDCSLQRRHQKVLEEAPSPVISSEERERMGGIVSKAMADMG 278

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 279 YRGAGTIEFLW--ENGEFYFIEMNTR 302


>gi|311747376|ref|ZP_07721161.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
 gi|311302644|gb|EAZ83258.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
          Length = 449

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P ++K   GG   G+ ++K++         +       + +    L +   +  
Sbjct: 148 ANEMGYPVILKATAGGGGRGMRIVKEESGFKKAWDDARMESGAAFGNDGLYLEKFVEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +             I  ++ K +   A    
Sbjct: 208 HIEIQIIGDKHGKACHLSERDCSIQ----RRHQKLVEETPSPFITDELRKAMGEAAIKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG  G    +FL D  +R  +++E+N +
Sbjct: 264 EAIGYEGAGTIEFLVD-KNRNFYFMEMNTR 292


>gi|218526170|gb|ACK86492.1| carbamoyl-phosphate synthase [Climacia areolaris]
          Length = 717

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +PD    
Sbjct: 126 SGSQAIKALREENVQTILINPNIATVQTSKGLADKVYFLPLDPEYVEQVIRSERPDGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +        + I     + D+    + ++     V    +
Sbjct: 186 TFGGQTALNCGVELEKANVFQKYGCEILGTPIQCIIETEDRKIFAERINEIGEKVAPSVA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG      +  +    L   +  H  QL+I++
Sbjct: 246 VHSVEEALKAAEILGYPVMARAAFSLGGLGSGFADNNDELKN--LAVQALAHSTQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AIKVIRHFGIVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|205373042|ref|ZP_03225848.1| pyruvate carboxylase [Bacillus coahuilensis m4-4]
          Length = 1095

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  V    K D      +G   E+       E   I +         +  DK++
Sbjct: 12  LDI-EDILRVAKEAKVDAIHPG-YGFLSENIQFSRRCEEEGILFIGPSSTHLDMFGDKVK 69

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +PV P     I               P +IK   GG   G+ +++ +  + 
Sbjct: 70  AREQAVLADIPVIPGSDGPIQQIEDVAKFGDTYGYPLIIKASLGGGGRGMRIVQSESDLK 129

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   ++GD   ++  +            K 
Sbjct: 130 ESYDRAKSEAKAAFGNDEVYVEKFIQNPKHIEVQILGDKEGNIVHLFERDCSVQRRHQKV 189

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +  L  ++  +I       A    + +        +FL      + F++E+N +
Sbjct: 190 VEVAPSVSLSDQLREEICH----SAVKLMKNVDYINAGTVEFLV--SDNEFFFIEVNPR 242


>gi|86605556|ref|YP_474319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. JA-3-3Ab]
 gi|86554098|gb|ABC99056.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           JA-3-3Ab]
          Length = 451

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     + +      A     DK  +++ + + GVP  P    
Sbjct: 79  AIHPGYGFLAENAKFAEMCADHNLIFIGPSPEAMRKMADKATARETMQAVGVPTVPGSRG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I  +   +     I  P +IK   GG   G+ V +  Q +   +  +            
Sbjct: 139 LITSDEEAVRLAEKIGYPVIIKATAGGGGRGMRVARDAQELLKMMRTAQGEAQAAFGDGG 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++          P+      +   + 
Sbjct: 199 IYLEKYIERPRHVEFQILADSHGNVVHLYERDCSIQRRHQKLLEEAPSPALTTSLRARMG 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A+   G    +FL D  + + +++E+N +
Sbjct: 259 AAAVKAAKAVNYVGAGTVEFLLD-KNGQFYFIEMNTR 294


>gi|254468010|ref|ZP_05081416.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
 gi|207086820|gb|EDZ64103.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
          Length = 448

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A    G KV  +  +  V      L  +                          
Sbjct: 14  ALRILRACRQMGIKVVTVHSEADVDAKYVKLSDESVCIGPAPSNQSYLNIPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +K+ +   G+PV P 
Sbjct: 74  DAQAIHPGYGFLSENADFAEQVEKSGFTFIGPKSETIRLMGDKVSAKEAMIKAGIPVVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       + +   +  P +IK   GG   G+ V+  + S+   +  + +  H   
Sbjct: 134 SDGELSDDPDEIIKTAKKVGYPVIIKAAGGGGGRGMRVVHSEASLLNAVSMTKNEAHSFF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +    L                ++          PA   P  + 
Sbjct: 194 GNAAVYMEKYLEKPRHIEYQVLADNHKNAIHLFERDCSMQRRHQKVIEEAPAPGLPDKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 KKMGDRCADACRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|126695409|ref|YP_001090295.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9301]
 gi|126542452|gb|ABO16694.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9301]
          Length = 449

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++   ++      +       + +    + +      
Sbjct: 148 ADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDGLYMEKFIKKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D S +V  +            +             I  ++ K++   A  A 
Sbjct: 208 HVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINTELRKKMGNAAIAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++IG  G    +FL D      +++E+N +
Sbjct: 264 KSIGYEGAGTVEFLVDDDDN-FYFMEMNTR 292


>gi|86360395|ref|YP_472283.1| putative urea amidolyase protein [Rhizobium etli CFN 42]
 gi|86284497|gb|ABC93556.1| putative urea amidolyase protein [Rhizobium etli CFN 42]
          Length = 1179

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 18/181 (9%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ +    +S+                    Y++        +
Sbjct: 149 RIGYPVMLKSTAGGGGIGMQLCADAESLKASFESVQRTARASFGDARVYIERFVAEARHV 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
                   +  V         L+  +       PA          + + A     A+   
Sbjct: 209 EVQIFGNGQGKVIALGERDCSLQRRNQKVVEETPAPGLSAATRARLHKSAIDLGAAVSYE 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +F++DP   + ++LE+N       P +T         A  G    +L+ WM+  A
Sbjct: 269 SAGTVEFIYDPQREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIRQA 316

Query: 297 S 297
           +
Sbjct: 317 A 317


>gi|327193828|gb|EGE60705.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CNPAF512]
          Length = 464

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ K   +   +  +             Y++       
Sbjct: 162 ALEIGYPVIVKASGGGGGRGMRVVPKANQLHEAIALTREEARKAFGSPSLYMEKFLQHPR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  I  DI + V      A + IG
Sbjct: 222 HVEIQVLCDDHGNAVWLGHRDCSMQRRHQKVVEEAPAPGIAPDIIQPVGMACVEACRQIG 281

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+       +++E+N +
Sbjct: 282 YRGVGTFEFLY--EDGAFYFIEMNTR 305


>gi|299065665|emb|CBJ36838.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum CMR15]
          Length = 456

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SEGALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   V+ D   +   +            K         +P +  
Sbjct: 194 GNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQKVIEEAPAPHIPRR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 252 --LIERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|239832077|ref|ZP_04680406.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
 gi|239824344|gb|EEQ95912.1| acetyl-CoA carboxylase, biotin carboxylase [Ochrobactrum
           intermedium LMG 3301]
          Length = 669

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 63  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 120

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D    
Sbjct: 121 SKKLAAEAGVSTVPGHMGLIEDADEAVKIAGSIGYPVMIKASAGGGGKGMRIAWNDDEAR 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 181 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 240

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 241 IEEAPSPFLDEATRKAMGEQAVALAKAVGYFSAGTVEFIVDG-NRNFYFLEMNTR----- 294

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 295 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 322


>gi|83858502|ref|ZP_00952024.1| acetyl-CoA carboxylase [Oceanicaulis alexandrii HTCC2633]
 gi|83853325|gb|EAP91177.1| acetyl-CoA carboxylase [Oceanicaulis alexandrii HTCC2633]
          Length = 449

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 14/219 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +         L  DK+ +KQ     G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGLTFIGPTAETIRLMGDKITAKQAAMDAGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ---SSSWNHGDQL 166
            I            I  P +IK   GG   G+ V + +  +   L      +    GD  
Sbjct: 137 AITDMDEARKVAKAIGFPVLIKAASGGGGRGMKVAESEDKLESALQTASSEAQAAFGDGA 196

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +   G      +   A        V   +      +             +  +   +
Sbjct: 197 VYIEKYLGKPRHIEIQVLADQHG--NVVHLGERDCSLQRRHQKVLEEAPSVALDAEARAK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++   A +AIG RG    +FL+   + + +++E+N +
Sbjct: 255 IGKVVTDAVKAIGYRGAGTVEFLY--ENGEFYFIEMNTR 291


>gi|189188736|ref|XP_001930707.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187972313|gb|EDU39812.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 682

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 26/160 (16%), Positives = 53/160 (33%), Gaps = 1/160 (0%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              S     +  +    I  P ++K +KGG   G+ ++  +      L  + S       
Sbjct: 129 YHGSNQDPEYLKEQAASIGYPVLLKAVKGGGGKGMRIVNTEAEFFDQLASAKSEARNSFG 188

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
                V+    T   +                     ++          PA    + I +
Sbjct: 189 DEVMLVEKYITTPRHIEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPHLDEAIRQ 248

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A  A  A+G  G    +F+FD  + + F++E+N +
Sbjct: 249 DIWEKARQAALAVGYEGAGTVEFIFDNDTGEFFFMEMNTR 288


>gi|156545438|ref|XP_001606715.1| PREDICTED: similar to ENSANGP00000014822 [Nasonia vitripennis]
          Length = 2249

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 427 SGSQAIKALKEENIQTVLINPNIATVQTSKGMADKVYFLPILPDYVEQVIQSERPDGVLL 486

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G     + I E   +    + I +   + D+     +       V    +
Sbjct: 487 TFGGQTALNCGVQLQSRGIFEKYGVKILGTPIESIIETEDRKLFADRVNEIDEKVAPSCA 546

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 547 VYSIQEALEAAEKLGYPVMARAAFSLGGLGSGFANTPEEL--KALAQQALAHSSQLIIDK 604

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 605 SLQGW-KEIEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 663

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 664 AIKVIRHLGVVGECNIQYALNPFSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 719

Query: 291 WM 292
            +
Sbjct: 720 KL 721


>gi|34398215|gb|AAQ67196.1| CAD [Atelestus pulicarius]
          Length = 1287

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 429 TFGGQTALNCGVELERAGVFSKYNVKILGTPIQSIIETEDRKIFADRVNEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG         +   +L   + +H  QL+I++
Sbjct: 489 VYSVAEALEAAERLGYPVMARAAFSLGGLGSGFANNTTELT--ILAHQALSHSSQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|90424691|ref|YP_533061.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
 gi|90106705|gb|ABD88742.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB18]
          Length = 664

 Score = 52.2 bits (123), Expect = 8e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------------VGLVLAHLK-- 50
                      G+ V  +  D                            +  ++A  K  
Sbjct: 24  ALRIMRTARKLGYAVVAVYSDADADALHVRAADAAVRIGGALPQQSYLNIEAIIAAAKQS 83

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+    A      + +      + A   +K  +K ++   GVP  P
Sbjct: 84  GADAVHPG-YGFLAENQDFAAACRDAGLLFIGPSAASIAAMANKAGAKAIMRKAGVPCVP 142

Query: 110 SIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK + GG   G+ +++   +    L  + S   G  
Sbjct: 143 GYQGADQSDEAMAREAASIGFPVMIKAVAGGGGRGMRLVEDAAAFAEALRGARSEAQGGF 202

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                 ++   +    +                     ++          P+  +   + 
Sbjct: 203 GDPTVILERAIVNPRHIEIQVFGDRYGHAVHLGERDCSVQRRHQKLIEEAPSPAVSQALR 262

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+  +A  A +AIG  G    +FL D    + +++E+N +
Sbjct: 263 EEMGTVAVNAAKAIGYEGAGTLEFLLDG-DGRFYFMEMNTR 302


>gi|224436448|ref|ZP_03657462.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
 gi|313142960|ref|ZP_07805153.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
 gi|313127991|gb|EFR45608.1| biotin carboxylase [Helicobacter cinaedi CCUG 18818]
          Length = 454

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 28/298 (9%)

Query: 19  GKACASALEDAGF--KV----SQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFG 63
             A  S  +   +   V      +  D+S    L           LK D  F   +G   
Sbjct: 34  AIAIYSTADKDAYYLDVADGKICVGGDKSSESYLNIPAIMSAAELLKVDAIFPG-YGFLS 92

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMD 119
           E+     I     I +         L  DK ++K V+   GVPV       +   +    
Sbjct: 93  ENQNFVEICSHHNIEFIGPSAEVMVLMSDKSKAKDVMKEAGVPVILGSDGALKDYKEAEK 152

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             + I  P ++K   GG   G+ V++K + +    L + S           Y++      
Sbjct: 153 IANEIGYPVILKAAAGGGGRGMRVVEKPEMLKNLYLAAESEAVSAFGDGTIYMEKFIRNP 212

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L      V          +          PA +   ++ + +   A  A Q I
Sbjct: 213 KHIEVQILADKHGNVLHIGERDCSAQRRQQKLIEESPAVVLKPEVRQRLLDTAVKAAQYI 272

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              G    +FL D      +++E+N +  +       EM   +G    +L+ WM+  A
Sbjct: 273 KYVGAGTFEFLLDANYEDFYFMEMNTR--LQVEHTVSEM--VSGL---DLVEWMIRIA 323


>gi|332716656|ref|YP_004444122.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium sp.
           H13-3]
 gi|325063341|gb|ADY67031.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium sp.
           H13-3]
          Length = 462

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   G+ V+++   +   +  +             Y++       
Sbjct: 161 ANEIGYPIIIKAAGGGGGRGMRVVQESALLHEAITLTREEARQAFGSAVLYMEKFLQHPR 220

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L  T             ++          PA  I +D+ + V      A + IG
Sbjct: 221 HIEIQVLCDTHGNAVWLGHRDCSMQRRHQKVVEEAPAPGISVDVIQPVGMACVEACRQIG 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FLF     K +++E+N +
Sbjct: 281 YRGVGTFEFLF--EDGKFYFIEMNTR 304


>gi|289423606|ref|ZP_06425406.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus anaerobius 653-L]
 gi|289155974|gb|EFD04639.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus anaerobius 653-L]
          Length = 449

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/277 (16%), Positives = 92/277 (33%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHLKP--------DLAFN-------------- 56
               L+D G +   I  DVDR  + + +A            D   N              
Sbjct: 20  IIRTLKDMGIRSVAIFSDVDRDSLHVQIADESICIGPKNVKDSYLNKVQIINAALVTGAD 79

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E+ EI +        +L  DK  +K+++   G+PV      
Sbjct: 80  AIHPGFGFLSENSSFAKLCEIYEIKFIGPSSRLISLMGDKEEAKRLMKEAGLPVVEGSET 139

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               ++   +I      P +IK   GG   G+ ++++ Q +    + +           E
Sbjct: 140 VVENIELAKIICEQIGYPIIIKARSGGGGKGMRLVREGQDLESAFMSARKEAENAFGDKE 199

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++        +    L      V         ++ +        P   I  +    + 
Sbjct: 200 VYIEKYIDDPRHIEVQILADEHGNVVHLGSRDCSIQMNHQKIIEEAPATSIRDETMNYLY 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A + +G       +FL D    K +++E+N +
Sbjct: 260 DMATRAAKYVGYTNAGTIEFLVD-KDGKAYFMEMNTR 295


>gi|213402917|ref|XP_002172231.1| carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate
           carbamoyltransferase Ura1 [Schizosaccharomyces japonicus
           yFS275]
 gi|212000278|gb|EEB05938.1| carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate
           carbamoyltransferase Ura1 [Schizosaccharomyces japonicus
           yFS275]
          Length = 2231

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 493 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKQERPDAIYV 552

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   E   +     G     +   + R     +   +    +  V   
Sbjct: 553 TFGGQTALNVGIELKDEFESLGVKVLGTPIQTIITTEDRELFARAMDEINEKCAKSVTAS 612

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        IS P +++       LG      +Q +    + S ++    Q+LIE+ +
Sbjct: 613 SVEEALAVSKKISFPVIVRSAYALGGLGSGFADNEQELVE--ICSKAFATSPQVLIERSM 670

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 + V   + +     ++  +        +  + Y  ++  A 
Sbjct: 671 KGW-KEIEYEVVRDAYDNCVTVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 729

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 730 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 779


>gi|168003447|ref|XP_001754424.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694526|gb|EDQ80874.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 2238

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 5/141 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGD 184
            P +IK   GG   GI  +  D+ +     Q      G  + I +       L   ++ D
Sbjct: 226 YPAMIKASWGGGGKGIRKVHNDEEVKALFKQVQGEVPGSPIFIMKVATQSRHLEVQLLCD 285

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +V  +            K        + P     +  + +++ A    + +   G +
Sbjct: 286 QFGNVAALHSRDCSVQRRHQKIIEEGPITIAPP----ETVRRLEQGACRLAKCVNYIGAA 341

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+   + + ++LE+N +
Sbjct: 342 TVEYLYSMETGEFYFLELNPR 362


>gi|317505988|ref|ZP_07963820.1| carbamoyl-phosphate synthase [Segniliparus rugosus ATCC BAA-974]
 gi|316255764|gb|EFV15002.1| carbamoyl-phosphate synthase [Segniliparus rugosus ATCC BAA-974]
          Length = 1110

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 47/313 (15%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLRAEGVRVSLVNSNPATIMTDPEFADATYIEPITPEFVEKVIAKERPDAILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+ R K +V+  G     S +
Sbjct: 89  TLGGQTALNTAIALYENGVLEKYGVELIGADVEAIQRGEDRQRFKDIVTKIGGESARSRV 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   +  P V++P      LG  + +  + + L      + +    +LIE+
Sbjct: 149 CYSMAEVQDTVAELGLPVVVRPSFTMGGLGSGLARTQEDLELIAGAGLAASPTANVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +F    +      +          +  +     
Sbjct: 209 SIYGWKEYELELMRDGKDNVVVVCSIENFDPVGVHTGDSVTVAPAMTLTDREFQRLRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G     F  +P   ++  +E+N  P ++  S            ++AA  
Sbjct: 269 IAILREVGVATGGCNVQFAVNPADGRIIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AIGYTLDEIINDI 339


>gi|165976532|ref|YP_001652125.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|254788765|sp|B0BQ46|PURT_ACTPJ RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|165876633|gb|ABY69681.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
          Length = 393

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 82/304 (26%), Gaps = 46/304 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  +    KPD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRALAEKEKPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +          +       
Sbjct: 84  EAIATATLVELEQEGYNVVPTAKATQLTMNREGIRRLAAEELGLKT-SPYRFVDNLEDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK +  I             D         G  + 
Sbjct: 143 QAVAEIGIPCVVKPIMSSSGHGQSVIKSEDQIQQAW---------DYSQEGGRAGGGRVI 193

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T++ V   +  S+                  P  +     K  Q  A  
Sbjct: 194 VEGFIKFDYEITQLTVRHVNGTSFLAPIGHRQEDGDYRESWQPQAMSDLALKRAQETAER 253

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYS 284
              A+G RGI   +        ++ + E++ +P   GM       +S F   A    G  
Sbjct: 254 ITTALGGRGIFGVELFVC--GDEIIFNEVSPRPHDTGMVTMASQELSQFALHARAILGLP 311

Query: 285 FREL 288
             E+
Sbjct: 312 ISEI 315


>gi|110680056|ref|YP_683063.1| acetyl-CoA carboxylase biotin carboxylase subunit [Roseobacter
           denitrificans OCh 114]
 gi|109456172|gb|ABG32377.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter
           denitrificans OCh 114]
          Length = 450

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   I +         +  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAGFVQIVEDHGISFIGPTAEHIRIMGDKITAKETMKNLGVPCVPGSDG 136

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              T++        I  P +IK   GG   G+ V +  + +    L + +    +    E
Sbjct: 137 GVATLEEAQRIGAEIGYPVIIKATAGGGGRGMKVAQNAEEMEKAFLTARAEGKSNFGNDE 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++    T   +        +            L+          P   I  +    + 
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQRRHQKVFEEAPGPSISAEERMAIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 257 KVCADAVARINYIGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|46136245|ref|XP_389814.1| hypothetical protein FG09638.1 [Gibberella zeae PH-1]
          Length = 2228

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 468 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIQYERPDAIYV 527

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 528 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAN 587

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 588 NIDEAMHAVKDIGFPVIVRAAYALGGLGSGFANNEDELME--LCNKAFAASPQVLIERSM 645

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 646 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 704

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 705 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 754


>gi|193078420|gb|ABO13406.2| putative geranyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 646

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|184159524|ref|YP_001847863.1| acetyl/propionyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|332873483|ref|ZP_08441434.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
 gi|183211118|gb|ACC58516.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii ACICU]
 gi|322509436|gb|ADX04890.1| Biotin carboxyl carrier protein [Acinetobacter baumannii 1656-2]
 gi|323519457|gb|ADX93838.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332738308|gb|EGJ69184.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
          Length = 646

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|238063916|ref|ZP_04608625.1| LOW QUALITY PROTEIN: carbamoyl-phosphate synthase subunit L
           [Micromonospora sp. ATCC 39149]
 gi|237885727|gb|EEP74555.1| LOW QUALITY PROTEIN: carbamoyl-phosphate synthase subunit L
           [Micromonospora sp. ATCC 39149]
          Length = 930

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/311 (13%), Positives = 88/311 (28%), Gaps = 40/311 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 96  SGTQACRVLRSEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVELVIAKERPDALLP 155

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC------------- 103
            L G    +  V      +   Y    I A+  ++++   +Q+                 
Sbjct: 156 TLGGQTALNTAVALHAAGVLDKYGVELIGANIDAINRGEDRQLFKDIVAKAGVRLGIADP 215

Query: 104 --GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              VP             +   +  P VI+P      LG  +   D  +        + +
Sbjct: 216 AALVPRSRVCHSMAEVEATVAELGLPVVIRPSFTMGGLGSGMAHSDADLRRIAGAGLAAS 275

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
              ++LIE+ V G +     +     D   +     +     +      +          
Sbjct: 276 PVHEVLIEESVLGWKEYELELMRDRHDNVVVVCSIENVDPMGVHTGDSVTVAPAMTLTDR 335

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           +          +  +     G     F  +P   ++  +E+N  P ++  S     +   
Sbjct: 336 EYQNLRDLGIAVLREVGVDTGGCNIQFAVNPADGRIVVIEMN--PRVSRSS--ALASKAT 391

Query: 282 GYSFRELLLWM 292
           G+   ++   +
Sbjct: 392 GFPIAKIAAKL 402


>gi|254426873|ref|ZP_05040580.1| urea carboxylase [Alcanivorax sp. DG881]
 gi|196193042|gb|EDX88001.1| urea carboxylase [Alcanivorax sp. DG881]
          Length = 1207

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/185 (15%), Positives = 59/185 (31%), Gaps = 16/185 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+     +  +                    +++       
Sbjct: 147 ASDIGYPIMLKSTAGGGGIGLSRCNDEAELVAAYESVKRLGENFFSDSGVFIERFVARAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA   P    +++   A    Q++ 
Sbjct: 207 HVEVQIFGDGNGTVLALGERECSLQRRNQKVVEETPAPNLPQATREKLHASAARLGQSVE 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     ++++D    + ++LE+N +     G+T  S+F       G    +L+ WM+  
Sbjct: 267 YRSAGTVEYIYDDQRDEFYFLEVNTRLQVEHGVTE-SVF-------GV---DLVAWMLML 315

Query: 296 ASCLR 300
           A   R
Sbjct: 316 AGGER 320


>gi|163803828|ref|ZP_02197678.1| acetyl-CoA carboxylase subunit A [Vibrio sp. AND4]
 gi|159172371|gb|EDP57248.1| acetyl-CoA carboxylase subunit A [Vibrio sp. AND4]
          Length = 446

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAIAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLDDDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRSEAELVEAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 DNDMVYMEKFLENPRHVEVQIIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|126643024|ref|YP_001086008.1| putative geranyl-CoA carboxylase alpha subunit [Acinetobacter
           baumannii ATCC 17978]
          Length = 622

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 71/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 48  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 106

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 107 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 166

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 167 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 226

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 227 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 269


>gi|330950749|gb|EGH51009.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           Cit 7]
          Length = 393

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPDFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALVESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|296331060|ref|ZP_06873534.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305674215|ref|YP_003865887.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii str. W23]
 gi|296151704|gb|EFG92579.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii ATCC
           6633]
 gi|305412459|gb|ADM37578.1| pyruvate carboxylase [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 1148

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    K D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIDIAKRNKVDAIHPG-YGFLSENIHFAKRCEEEGIVFIGPKSEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P +IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQTNGYPIIIKASLGGGGRGMRIVRSESEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 EAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLSPELRNQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIEVNPR 296


>gi|332637263|ref|ZP_08416126.1| carbamoyl-phosphate synthase large subunit [Weissella cibaria KACC
           11862]
          Length = 1059

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 84/302 (27%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G++V  ++ +                       +  ++   +PD    
Sbjct: 29  SGTQATMSLKEEGYEVVLVNSNPATIMTDAEMADRVYIEPLTLEFLERIIRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHS------GILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +         +               +  A   +  +         VP    
Sbjct: 89  TLGGQTGLNLAKDLSETGILAEMGIELLGTKLTAIEEAEDREAFKDLMDRLHEPVPESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +        P +++P       G  +      +          +   Q+LIE+
Sbjct: 149 ATTVDDALTFATTHGYPVIVRPAYTLGGTGGGIAATPTELAEIAANGLELSPVTQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +          +      ++    +  
Sbjct: 209 SIAGFKEIEFEVMRDAADNALIVASMENFDPVGIHTGDSIVVAPVQTLSDRELQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        +P S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALNPESFQYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 44.5 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 37/287 (12%), Positives = 88/287 (30%), Gaps = 32/287 (11%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            A++ AG++   ++ +                       V  V+ H +P        G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDHEQPLGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         + I  T    L  A   +             PV  +       + +  
Sbjct: 639 AINLAAPLAARGVNILGTTVENLDRAEDREAFDQVIKALQLPQPVGKTATTVPGALAAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++     +   + ++   ++   +LI+ Y+ G E    V+
Sbjct: 699 EVGYPVLVRPSYVLGGRAMEIVTNAAELTDYMGRAVKVSNDHPVLIDSYLVGAEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D    V     P    +       S +S  V P++     +  E+   +    +++   
Sbjct: 759 SDGETVVI----PGIMEHIERAGVHSGDSMSVYPSQTLSQKVKDEMVAASIALAKSLQTV 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G+    F+        + +E+N +   T     P ++        +L
Sbjct: 815 GLMNVQFVI--HDNTAYVIEVNPRASRT----VPFISKVTHLQLAQL 855


>gi|329850497|ref|ZP_08265342.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           biprosthecum C19]
 gi|328840812|gb|EGF90383.1| acetyl-CoA carboxylase, biotin carboxylase [Asticcacaulis
           biprosthecum C19]
          Length = 452

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+    + +         +  DK+ +KQ     G+PV P    
Sbjct: 79  AIHPGYGFLSENAKFADIVSAHGLTFIGPKAEHIRMMGDKITAKQAARDSGIPVVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      M +   I  P +IK   GG   G+ V K   S+   ++ + S          
Sbjct: 139 GVATVEEAMAAAETIGFPVLIKAASGGGGRGMKVAKDRDSLAEAVMSAQSEAAAAFGDGT 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            Y++        +    +  +   V         L+          P+ +     ++   
Sbjct: 199 VYMERYLQKPRHIEIQIIADSHGNVCHLGERDCSLQRRHQKVLEEAPSPVIDKAARDKIG 258

Query: 230 LAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + IG  G+   +FL+     + F++E+N +
Sbjct: 259 KVCVDAIKKIGYLGVGTIEFLY--EDGEFFFIEMNTR 293


>gi|270260920|ref|ZP_06189193.1| urea carboxylase [Serratia odorifera 4Rx13]
 gi|270044404|gb|EFA17495.1| urea carboxylase [Serratia odorifera 4Rx13]
          Length = 1207

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 57/185 (30%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+     + ++                    +++       
Sbjct: 147 AARIGYPVMLKSTAGGGGIGLTRCDDEAALREAYDSVKRLGEQFFRDSGAFIERFVDQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P    + + + A    +++ 
Sbjct: 207 HVEVQIFGDGQGRVAALGERDCSLQRRNQKVVEETPAPNLPAATRQALHQAAVALGESVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D    + ++LE+N       P         EM    G    +L+  M++
Sbjct: 267 YRSAGTVEFIYDGARDEFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLQ 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 VAAGD 319


>gi|262275381|ref|ZP_06053191.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Grimontia
           hollisae CIP 101886]
 gi|262220626|gb|EEY71941.1| methylcrotonyl-CoA carboxylase biotin-containing subunit [Grimontia
           hollisae CIP 101886]
          Length = 469

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI VI+++        Q+S+           Y++      
Sbjct: 147 QARQIGFPVMIKASAGGGGRGIRVIEQEGEFLTQYHQASAEAQSAFGDGTLYLEKFIRQS 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +           A +P  + + + + A    +++ 
Sbjct: 207 RHVEVQILADGENAVHLFERECSLQRRRQKVWEEAPCAVLPDRVREAMCQSAVSLAKSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +G    +FL+D  S   +++E+N       P +T         A  G    +L+  M++
Sbjct: 267 YKGAGTIEFLYDEESESFYFIEMNTRIQVEHP-ITE--------AITGV---DLIREMIQ 314

Query: 295 DAS 297
            A+
Sbjct: 315 IAA 317


>gi|1255013|gb|AAB17897.1| D-alanine:D-alanine ligase [Enterococcus avium]
          Length = 200

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 1/157 (0%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +         +     +  +  P  +KP   GSS+GI   +  + +   L ++  ++   
Sbjct: 44  LKNQWKENPKQIFDKCEGTLLYPMFVKPANMGSSVGISRAENREELQNALQEAYRYDSRA 103

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +        IE+      D    +    V +  FY Y  KY +      +PA +P D+ 
Sbjct: 104 LVEQGIDACEIEVAVLGNDDVRTTLPGEVVKEEAFYDYNAKYINNTIQMAIPADVPEDVM 163

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
           ++ +  A  A   +G  G+SR DF       ++F  E
Sbjct: 164 QKARDFAKSAISMLGGSGLSRCDFFLT-NKNELFLDE 199


>gi|323488481|ref|ZP_08093726.1| pyruvate carboxylase [Planococcus donghaensis MPA1U2]
 gi|323397849|gb|EGA90650.1| pyruvate carboxylase [Planococcus donghaensis MPA1U2]
          Length = 1146

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 31/239 (12%), Positives = 80/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E  +I +         +  DK++
Sbjct: 64  LDI-EDIIRIAKDSNVDAIHPG-YGFLSENVHFARRCEEEDIIFIGPTSKHLDMFGDKVK 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++    + G+PV P       ++      S     P +IK   GG   G+ +++  + + 
Sbjct: 122 ARTQAIAAGIPVIPGTDGPVESLKEVEEFSKTAGFPLMIKASLGGGGRGMRIVRSQEELA 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   +  + +       +   ++GD+  +V  +            + 
Sbjct: 182 SSYERAKSEAKAAFGSDEMYVEKFVEKPKHIEVQILGDSEGNVIHLYERDCSIQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       I  ++  E+   A    + I        +FL    + + +++E+N +
Sbjct: 238 HQKVVEIAPSNSISNELRNEICDAAVKLMKNIDYINAGTVEFLV--ANDEFYFIEVNPR 294


>gi|255319008|ref|ZP_05360231.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           radioresistens SK82]
 gi|255303935|gb|EET83129.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           radioresistens SK82]
          Length = 457

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFIFIGPRPEHIRLMGNKVSAIMAMKKSGVPTVPGSAH 136

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              T +       I  P ++K   GG   G+ ++++  ++          +  W   D +
Sbjct: 137 AVTTNNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++      +   ++GD +     +            K         LP +   DI +
Sbjct: 197 YMERFLQKPRHVEVQILGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPFLPEQARADILE 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   A + +  RG    +FLF     + F++E+N +
Sbjct: 257 ----ACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|225016827|ref|ZP_03706019.1| hypothetical protein CLOSTMETH_00739 [Clostridium methylpentosum
           DSM 5476]
 gi|224950401|gb|EEG31610.1| hypothetical protein CLOSTMETH_00739 [Clostridium methylpentosum
           DSM 5476]
          Length = 466

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+       EL  + +      +  +  DK  +KQ +   GVPV P    
Sbjct: 96  AIHPGFGFLSENSSFVKTCELCGVTFIGPSPKSMDMMGDKAHAKQTMRRAGVPVVPGSDG 155

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +            I  P ++K   GG   GI  +  ++ +   +  +       +    
Sbjct: 156 VVTDIEEAKKIAAQIGYPVMVKASAGGGGRGIRKVDDERELESAMTAAKTEALSFFGDDG 215

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +  V+   +   ++ D   +V  +            + +           +  ++ 
Sbjct: 216 VYIEKFIVNPRHVEIQLLADKFGNVVHLGERDCSVQ----RRNQKMIEESPSPIMTPELR 271

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A  A  A G       +FL D      +++E+N +
Sbjct: 272 HRMGTAARAAATACGYYNAGTVEFLVD-SDLNFYFMEMNTR 311


>gi|294656495|ref|XP_002770271.1| DEHA2D07040p [Debaryomyces hansenii CBS767]
 gi|199431516|emb|CAR65627.1| DEHA2D07040p [Debaryomyces hansenii]
          Length = 1821

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 52/184 (28%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 767 AAKLEYPVMVKSTAGGGGIGLQKVDSEDDIERVFQTVQHQGKSYFGDSGVFIERFVEDAR 826

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +                     L+  +       PA    +  +   R  +     +I 
Sbjct: 827 HVEVQVFGDGYGKAIALGERDCSLQRRNQKIIEETPAPNLTETTRIKMRKASESLAASIN 886

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 887 YKCAGTVEFIYDEKRDEFYFLEVNAR----------LQVEHPITEMVTGL---DLVEWML 933

Query: 294 EDAS 297
             A+
Sbjct: 934 LIAA 937


>gi|300690400|ref|YP_003751395.1| Biotin carboxylase (acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum PSI07]
 gi|299077460|emb|CBJ50085.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum PSI07]
          Length = 455

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPECIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              E Y++        +    L                ++          P   IP  + 
Sbjct: 194 GNPEVYMEKFLEHPRHVEIQVLADQHRNAVWLGERDCSMQRRHQKVIEEAPAPHIPRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 ERIGDRCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|189463098|ref|ZP_03011883.1| hypothetical protein BACCOP_03800 [Bacteroides coprocola DSM 17136]
 gi|189430077|gb|EDU99061.1| hypothetical protein BACCOP_03800 [Bacteroides coprocola DSM 17136]
          Length = 503

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ + +       D      +G   E+           I +            DK+ 
Sbjct: 61  LNIDK-IIMAAKRHGVDAIHPG-YGFLSENSEFARRCREEGIIFIGPDPETMDAMGDKIS 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++ + + GVPV P       +++    I      P ++K   GG   G+ +I  +  + 
Sbjct: 119 ARKHMIAAGVPVVPGTEQPLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHSESEVE 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L                ++  +   
Sbjct: 179 EAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ +++   A  A +A+  +G    +FL D      ++LE+N +
Sbjct: 239 VEETPSPFVTPELRQKMGEAAVAAAKAVNYKGAGTIEFLVDKHRN-FYFLEMNTR 292


>gi|86450071|gb|ABC96224.1| carbamoylphosphate synthetase [Chelipoda sp. JKM-2006]
          Length = 1159

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 430 TFGGQTALNCGVELDRAGIFAKYSVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 490 VYSVVEALEAAKKLGYPVMARAAFSLGGLGSGFANNQEELM--ILAKQALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|169335683|ref|ZP_02862876.1| hypothetical protein ANASTE_02103 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258421|gb|EDS72387.1| hypothetical protein ANASTE_02103 [Anaerofustis stercorihominis DSM
           17244]
          Length = 456

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              IS P +IK   GG   G+ +++ ++    +   + S         + Y++       
Sbjct: 148 AKEISYPVIIKASNGGGGRGMRIVRSEEEFEDNFNNAVSEAKACFGDSDVYLEKYIENPK 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V          +  +       P  +  D I K +   A  A + +G
Sbjct: 208 HIEIQLLGDKHGNVIHLFERDCSFQRRNQKLIEEAPCHVLDDNIRKSMITDAVKACRHVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   +FL D  S K +++E+N +
Sbjct: 268 YDSVGTIEFLLD-KSGKYYFMEMNTR 292


>gi|328542879|ref|YP_004302988.1| carbamoyl-phosphate synthase large subunit [polymorphum gilvum
           SL003B-26A1]
 gi|326412625|gb|ADZ69688.1| Carbamoyl-phosphate synthase large subunit [Polymorphum gilvum
           SL003B-26A1]
          Length = 1120

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 87/320 (27%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G+++  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACKALREEGYRIILVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS----------- 101
            + G        D   + +L    +    +       + D+ + +  +            
Sbjct: 89  TMGGQTALNCALDLEREGVLAKFGVEMIGARADVIEKAEDREKFRAAMDAIGLENPRAAI 148

Query: 102 ---------SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                    +  +            + +   I  P +I+P       G  V    +    
Sbjct: 149 ASSPAIRDENGKIVGYDRNAGFMEALKALDEIGLPAIIRPAFTLGGTGGGVAYNREEFET 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                   +   Q+LI++ + G +     +     D   I     +     +      + 
Sbjct: 209 IARSGIDASPVGQVLIDESLLGWKEYEMEVVRDKADNCIIICSIENVDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  DP S ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRDASIAVLREIGVETGGSNVQFAVDPESGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344



 Score = 39.1 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +  D+  E++R      +A+   G+    +       +++ LE+N +   T  
Sbjct: 843 CSLPPYSLSKDLIAELKRQTEALARALQVGGLMNVQYAI--RDGEIYVLEVNPRASRT-- 898

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    ++   +
Sbjct: 899 --VPFVAKTIGAPIAKIASRI 917


>gi|260429407|ref|ZP_05783384.1| carbamoyl-phosphate synthase, large subunit [Citreicella sp. SE45]
 gi|260420030|gb|EEX13283.1| carbamoyl-phosphate synthase, large subunit [Citreicella sp. SE45]
          Length = 1111

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/315 (11%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLKLEEMGVLEKFGVEMIGAKREAIEMAEDRALFREAMDRIGLENPAATI 148

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     D+                  I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKDNGKADLDAGVAIALEALEDIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRTG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P + ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPENGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 103/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 630 RLYFEPLTFEHVMEILRVELERGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQALVNQLGLKQPKNGIASTDAQALAIADDIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G  EL    + D         +   +       
Sbjct: 750 MAHLERYINEAVVVSGDSPVLLDSYLSGATELDVDALCDGENVHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  ++   ++       +A+   G+    F       +++ +E+N +
Sbjct: 807 HSGDSACSLPPYSLSAEVIDRIKEQTVALARALRVVGLMNVQFAI--KDDEIYLIEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|317046336|ref|YP_004113984.1| urea carboxylase [Pantoea sp. At-9b]
 gi|316947953|gb|ADU67428.1| urea carboxylase [Pantoea sp. At-9b]
          Length = 1199

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      Q +     +       +      +++       
Sbjct: 147 ASEIGYPVMLKSTAGGGGIGMQRCDDAQQLADAFTRVKRLAGHNFADDGVFLEKFIARAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V          +  +       PA    D +  E+Q  A    +A+ 
Sbjct: 207 HIEVQIFGDGAGEVIALGERDCSAQRRNQKVMEETPAPGLSDAVRAELQATAVRLGRAVQ 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVED 295
            R     ++++D  S++ ++LE+N             +    G +   +  +L+ WMV+ 
Sbjct: 267 YRSAGTVEYVYDEGSQQFWFLEVNT-----------RLQVEHGVTEMVYGVDLVRWMVQL 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|255070025|ref|XP_002507094.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
 gi|226522369|gb|ACO68352.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
          Length = 2139

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 61/162 (37%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      ++S + I  P ++K  +GG   GI +   D  + ++     +   G 
Sbjct: 266 IFNKAMVTTIDECLESANRIGYPVMLKASEGGGGKGIRMSANDDELRVNFEMVKAEVPGS 325

Query: 165 QLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + + Q       L   ++GD   +   +            +          P+     +
Sbjct: 326 PMFMMQLCTQARHLEVQIVGDEYGNAVALNGRDCSTQ----RRFQKIFEEGPPSIADPQV 381

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++E+++ A    + IG  G    ++L++  +   F+LE+N +
Sbjct: 382 FREMEKAAQRLTRNIGYIGAGTVEYLYNAETHDYFFLELNPR 423


>gi|303273530|ref|XP_003056126.1| acetyl-coa carboxylase [Micromonas pusilla CCMP1545]
 gi|226462210|gb|EEH59502.1| acetyl-coa carboxylase [Micromonas pusilla CCMP1545]
          Length = 2145

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 59/146 (40%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
            + I  P ++K  +GG   GI +   D+ + ++     +   G  + + Q       L  
Sbjct: 287 ANRIGYPVMLKASEGGGGKGIRMSANDEELRVNFEMVKAEVPGSPMFMMQLCSQARHLEV 346

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++GD   +   ++           +          P      I++E+++ A    + IG
Sbjct: 347 QIVGDEYGNAVALSGRDCSTQ----RRFQKIFEEAPPTIADPTIFREMEKAAQRLTRNIG 402

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L++  ++K ++LE+N +
Sbjct: 403 YVGAGTVEYLYNATTKKYYFLELNPR 428


>gi|262378271|ref|ZP_06071428.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
 gi|262299556|gb|EEY87468.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter
           radioresistens SH164]
          Length = 457

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVESSGFIFIGPRPEHIRLMGNKVSAIMAMKKSGVPTVPGSAH 136

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
              T +       I  P ++K   GG   G+ ++++  ++          +  W   D +
Sbjct: 137 AVTTNNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++      +   ++GD +     +            K         LP +   DI +
Sbjct: 197 YMERFLQKPRHVEVQILGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPFLPEQARADILE 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   A + +  RG    +FLF     + F++E+N +
Sbjct: 257 ----ACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|260754930|ref|ZP_05867278.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260883941|ref|ZP_05895555.1| propionyl-CoA carboxylase alpha subunit [Brucella abortus bv. 9
           str. C68]
 gi|260675038|gb|EEX61859.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella abortus bv. 6 str. 870]
 gi|260873469|gb|EEX80538.1| propionyl-CoA carboxylase alpha subunit [Brucella abortus bv. 9
           str. C68]
          Length = 461

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +  +  D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKEIGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I      P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +   K +   A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|195060974|ref|XP_001995899.1| GH14119 [Drosophila grimshawi]
 gi|193891691|gb|EDV90557.1| GH14119 [Drosophila grimshawi]
          Length = 700

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 173 AKIIGFPLMIKAVRGGGGKGMRIAEKPEDFLGALNSARTESLKSFGDSSVLLERYVRSPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 233 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 293 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRVA 342

Query: 297 S 297
           +
Sbjct: 343 A 343


>gi|209546633|ref|YP_002278551.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209537877|gb|ACI57811.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM2304]
          Length = 464

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ K   +   +  +             Y++       
Sbjct: 162 ALEIGYPVIVKASGGGGGRGMRVVLKADQLHEAIALTREEARKAFGSPALYMEKFLEHPR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          PA  I  DI + V      A + IG
Sbjct: 222 HIEIQVICDDRGNAVWLGHRDCSMQRRHQKVVEEAPAPGIAPDIIQPVGMACVQACRQIG 281

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+       +++E+N +
Sbjct: 282 YRGVGTFEFLY--EDGAFYFIEMNTR 305


>gi|156900688|gb|ABU96747.1| pyruvate carboxylase [Rhizobium sp. TAL1145]
          Length = 1153

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 53/147 (36%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ I    
Sbjct: 155 MAEEIGYPVMLKASWGGGGRGMRVIRAEADLAKEVTEAKREAMAAFGKDEVYLEKIVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    D   +E+   +    +A 
Sbjct: 215 RHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLTDAQRQELAAYSLKIAEAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|86450145|gb|ABC96261.1| carbamoylphosphate synthetase [Parathalassius sp. JKM-2006]
          Length = 1295

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      V+     V    +
Sbjct: 430 TFGGQTALNCGVELEKSGIFAKYNVRIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   +  P + +       LG      +  +   +L   +  H +QL+I++
Sbjct: 490 VYSVKEALQAAEKLGYPVMARAAFSLGGLGSGFANNETELQ--VLAQQALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 548 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNNEYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|86450143|gb|ABC96260.1| carbamoylphosphate synthetase [Nematoproctus sp. JKM-2006]
          Length = 1297

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSTGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELERSGIFAKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG      ++ +    L   ++ H +QL+I++
Sbjct: 488 VYSIKEALDAATKLGYPVMARAAFSLGGLGSGFANNERELQE--LAQQAFAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|32491352|ref|NP_871606.1| hypothetical protein WGLp603 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25166559|dbj|BAC24749.1| accC [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 445

 Score = 52.2 bits (123), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 55/182 (30%), Gaps = 3/182 (1%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +   +S   +  K  +         S    +      + I  P VIK  KGG    + ++
Sbjct: 113 MGDKISAISVMKKIGMPCLPTSFNISKNNIKKNTFIANKIGYPIVIKASKGGGGRAMKIV 172

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            K+  +   +  S S +         Y +        +    L                +
Sbjct: 173 YKNSELEDSICISKSESKIAFNDDSLYFEKYIENAKHIEIQVLSDGHGNAEYLVERDCSI 232

Query: 205 KYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +          P+      I   + +    A   I  +G+   +FL+    +  +++E+N
Sbjct: 233 QRRYQKILEESPSVYLNKKIRNYLGKFCIKACLLINYKGVGTFEFLY--KDKNFYFIEMN 290

Query: 264 VQ 265
            +
Sbjct: 291 TR 292


>gi|254487955|ref|ZP_05101160.1| urea carboxylase [Roseobacter sp. GAI101]
 gi|214044824|gb|EEB85462.1| urea carboxylase [Roseobacter sp. GAI101]
          Length = 1170

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 58/181 (32%), Gaps = 18/181 (9%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ +   + ++           +        +++        +
Sbjct: 149 RIGYPVMLKSTAGGGGIGMQLCADEAALTAAFETVGRTANASFGDARVFIERFVADARHV 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
                      V         L+  +       PA    D +  ++   A     ++   
Sbjct: 209 EVQVFGDGAGRVIALGERDCSLQRRNQKVVEETPAPGLPDAVRAQLHAAAKALCASVSYA 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +F++DPL    ++LE+N       P +T         A  G    +L+ WM+  A
Sbjct: 269 SAGTVEFIYDPLREDFYFLEVNTRLQVEHP-VTE--------AVYGI---DLVEWMIRQA 316

Query: 297 S 297
           +
Sbjct: 317 A 317


>gi|409450|gb|AAA81471.1| acetyl-CoA carboxylase [Cyclotella cryptica]
          Length = 2089

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/243 (16%), Positives = 83/243 (34%), Gaps = 18/243 (7%)

Query: 24  SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           +AL+  G K   I     V  VL      +A N+L           A +  +    +  G
Sbjct: 199 NALDKLGIKF--IGPTGPVMSVLGDK---IAANIL--------AQTAKVPSIPWSGSFGG 245

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
                L  D      +          +       + ++       +IK  +GG   GI  
Sbjct: 246 PDDGPLQADLTEEGTIPMEIFNKGLVTSADEAVIVANKIGWENGIMIKASEGGGGKGIRF 305

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +  +  +    +Q S+   G  +  ++   +   +   ++GD   +   +          
Sbjct: 306 VDNEADLRNAFVQVSNEVIGSPIFLMQLCKNARHIEVQIVGDQHGNAVALNGRDCSTQ-- 363

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +          P+ +P + + E++  A    Q IG +G    ++L++    K F+LE+
Sbjct: 364 --RRFQKIFEEGPPSIVPKETFHEMELAAQRLTQNIGYQGAGTVEYLYNAADNKFFFLEL 421

Query: 263 NVQ 265
           N +
Sbjct: 422 NPR 424


>gi|302185520|ref|ZP_07262193.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. syringae 642]
          Length = 393

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPDFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|294673622|ref|YP_003574238.1| carbamoyl-phosphate synthase large subunit [Prevotella ruminicola
           23]
 gi|294472101|gb|ADE81490.1| carbamoyl-phosphate synthase, large subunit [Prevotella ruminicola
           23]
          Length = 1059

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G K   I+ +                       V  V+   +PD    
Sbjct: 12  SGSQALKALREEGVKTVLINPNIATVQTSEGVADEIYFLPVQPYFVERVIEKERPDGILL 71

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + +   GV    S  
Sbjct: 72  AFGGQTALNCGVELYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVKKLDEIGVKTIKSEA 131

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      ++ +    L   ++    Q+L+E+
Sbjct: 132 CSDIESARKAAKALGYPVILRAAYALGGLGSGFCDNEEELNK--LAEKAFAFSPQVLVEK 189

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 190 SLKGW-KEIEYEVVRDKYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 248

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 249 AIKIIRHIGIVGECNVQYAFDPQSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 300


>gi|197334799|ref|YP_002157180.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio fischeri MJ11]
 gi|197316289|gb|ACH65736.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio fischeri MJ11]
          Length = 447

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEAKNKTHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVEAIAMTRAEAKACF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNEMVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|32265694|ref|NP_859726.1| biotin carboxylase [Helicobacter hepaticus ATCC 51449]
 gi|32261742|gb|AAP76792.1| biotin carboxylase [Helicobacter hepaticus ATCC 51449]
          Length = 454

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 96/298 (32%), Gaps = 28/298 (9%)

Query: 19  GKACASALEDAGF--KV----SQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFG 63
             A  S  +   +   V      +  D+S    L           LK D  F   +G   
Sbjct: 34  AIAIYSTADKDTYYLDVADAKICVGGDKSSESYLNIPAIMSAAELLKADAIFPG-YGFLS 92

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMD 119
           E+     I     I +         L  DK ++K V+   GVPV       +   +    
Sbjct: 93  ENQNFVEICSHHSIEFIGPTADVMVLMSDKSKAKDVMKEAGVPVILGSDGALKDYKEAQK 152

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ V++K + +    L + S           Y++      
Sbjct: 153 IADEIGYPVILKAAAGGGGRGMRVVEKPEMLKNLYLAAESEAVSAFGDGTIYMEKFIRNP 212

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L      V          +          PA +   ++ + + + A  A Q I
Sbjct: 213 KHIEVQILADKHGNVLHIGERDCSAQRRQQKLIEESPAVVLKPEVRQRLLQTAVKAAQYI 272

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
              G    +FL D      +++E+N +  +       EM   +G    +L+ WM+  A
Sbjct: 273 KYVGAGTFEFLLDANYEDFYFMEMNTR--LQVEHTVSEM--VSGL---DLVEWMIRIA 323


>gi|269127222|ref|YP_003300592.1| carbamoyl-phosphate synthase large subunit [Thermomonospora curvata
           DSM 43183]
 gi|268312180|gb|ACY98554.1| carbamoyl-phosphate synthase, large subunit [Thermomonospora
           curvata DSM 43183]
          Length = 1107

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/308 (9%), Positives = 79/308 (25%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSV-GLVLAHLKPDLAFN 56
           SG      L+  G +V  ++                    +   V   ++A  +PD    
Sbjct: 29  SGTQACRVLKSEGLRVVLVNSNPATIMTDPEFADATYVEPITPDVVEKIIAKERPDALLP 88

Query: 57  ------------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
                        LH +   +     ++                  +    + +   +  
Sbjct: 89  TLGGQTALNTAIALHESGVLERYGVELIGADIEAIQAGENRERFKEVVAAVAAKYGLNAE 148

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                        + +   +  P V++P       G  +   +  +        + +   
Sbjct: 149 SARSVICHSMDECLAAAAELGYPLVVRPSFTLGGTGSGMAYSEADLRRIAGAGLAASPTS 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++L+E+ + G +     +     D   I     +     +      +          +  
Sbjct: 209 EVLLEESILGWKEYELEVMRDRADNVVIVCSIENLDPMGVHTGDSITVAPAMTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G     F   P + ++  +E+N  P ++  S     +   G+ 
Sbjct: 269 NMRDVAIAVIREVGVDTGGCNIQFAVHPETGRMIVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKIAAKL 332


>gi|330998086|ref|ZP_08321914.1| carbamoyl-phosphate synthase, large subunit [Paraprevotella
           xylaniphila YIT 11841]
 gi|329569175|gb|EGG50966.1| carbamoyl-phosphate synthase, large subunit [Paraprevotella
           xylaniphila YIT 11841]
          Length = 1074

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P     
Sbjct: 28  SGSQALKALKEEGIETVLINPNIATVQTSEGVADQIYFLPVTPFFVEKVIRKERPQGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G     + ILE   +    + + A   + D+    + +    V    S  
Sbjct: 88  AFGGQTALNCGVALYKEGILEKYGVQVLGTPVQAIIDTEDRELFVKKLDEIDVKTIKSHA 147

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CGNIEEARKAAAHLGYPVIIRAAYALGGLGSGFCDNEEELNK--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIRIIRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|317405244|gb|EFV85580.1| urea amidolyase subunit 2 [Achromobacter xylosoxidans C54]
          Length = 1211

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 18/184 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+     +  + +                  +++      
Sbjct: 146 QAERIGYPVMLKSTAGGGGIGLSRCDNEAELTVAFDSVQRMGEHFFRDGGAFIERYVDNA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
             +           V         ++  +       P   +P      +   A    +++
Sbjct: 206 RHVEVQIFGDGAGRVLALGERDCSVQRRNQKVIEETPAPHLPAATRAALLAAAVKLGESV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             R     +F++DP     ++LE+N       P +T         A  G    +L+  M+
Sbjct: 266 AYRSAGTVEFIYDPARDSFYFLEVNTRLQVEHP-VTE--------AVTGL---DLIECML 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RVAA 317


>gi|302525869|ref|ZP_07278211.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. AA4]
 gi|302434764|gb|EFL06580.1| carbamoyl-phosphate synthase, large subunit [Streptomyces sp. AA4]
          Length = 1106

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V  V+A  +PD    
Sbjct: 30  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEFADATYIEPVTPDFVEKVIAAERPDALLA 89

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G            + +LE   +    + I A     D+ + K +V   G  V  S +
Sbjct: 90  TLGGQTALNCAVALHERGVLEKYGVELIGADIDAIQRGEDRQKFKDIVRKIGADVPRSRV 149

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 150 CHNMDEVRETVAELGLPVVIRPSFTMGGLGSGMAHTPEDLERLASTGLTESPVTEVLIEE 209

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +  +  +      +          +        
Sbjct: 210 SVLGWKEYELELMRDKHDNVVVVCSIENVDAMGVHTGDSVTVAPTMTLTDREYQVMRDVG 269

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F F+P+  ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 270 IAVLREVGVDTGGCNIQFAFNPVDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 325

Query: 291 WM 292
            +
Sbjct: 326 KL 327


>gi|270296634|ref|ZP_06202833.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D20]
 gi|270272621|gb|EFA18484.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D20]
          Length = 1080

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 30  SGSQALKALKEEGIYTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 89

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    Q ++   V    S  
Sbjct: 90  AFGGQTALNCGVSLYKDKIFEKYGVTVLGTPVQAIIDTEDREIFVQKLNEIDVKTIKSEA 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 150 VENAADARRAARELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 208 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP+S     +E+N +  ++  S     +   GY   
Sbjct: 267 AIRIIRHIGIVGECNVQYAYDPMSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 318


>gi|254526583|ref|ZP_05138635.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9202]
 gi|221538007|gb|EEE40460.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9202]
          Length = 449

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++   ++      +       + +    + +      
Sbjct: 148 ADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDGLYMEKFIKKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D S +V  +            +             I  ++ K++   A  A 
Sbjct: 208 HVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINAELRKKMGNAAIAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++IG  G    +FL D      +++E+N +
Sbjct: 264 KSIGYEGAGTVEFLVDDDDN-FYFMEMNTR 292


>gi|157412411|ref|YP_001483277.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9215]
 gi|157386986|gb|ABV49691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9215]
          Length = 449

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++   ++      +       + +    + +      
Sbjct: 148 ADDIGYPVIIKATAGGGGRGMRLVENSDNLEKMFKAAQGEAEAAFGNDGLYMEKFIKKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D S +V  +            +             I  ++ K++   A  A 
Sbjct: 208 HVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINAELRKKMGNAAIAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++IG  G    +FL D      +++E+N +
Sbjct: 264 KSIGYEGAGTVEFLVDDDDN-FYFMEMNTR 292


>gi|160889499|ref|ZP_02070502.1| hypothetical protein BACUNI_01923 [Bacteroides uniformis ATCC 8492]
 gi|156861016|gb|EDO54447.1| hypothetical protein BACUNI_01923 [Bacteroides uniformis ATCC 8492]
          Length = 1080

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 30  SGSQALKALKEEGIYTVLINPNIATVQTSEGVADQIYFLPVTPYFVEKVIEKERPDGIML 89

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       I E   +    + + A   + D+    Q ++   V    S  
Sbjct: 90  AFGGQTALNCGVSLYKDKIFEKYGVTVLGTPVQAIIDTEDREIFVQKLNEIDVKTIKSEA 149

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 150 VENAADARRAARELGYPVIVRAAYALGGLGSGFCDNEEELN--VLVEKAFSFSPQVLVEK 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 208 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP+S     +E+N +  ++  S     +   GY   
Sbjct: 267 AIRIIRHIGIVGECNVQYAYDPMSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 318


>gi|154252340|ref|YP_001413164.1| Urea carboxylase [Parvibaculum lavamentivorans DS-1]
 gi|154156290|gb|ABS63507.1| Urea carboxylase [Parvibaculum lavamentivorans DS-1]
          Length = 1205

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 55/184 (29%), Gaps = 18/184 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG  +G+ + +    +P            +      +++      
Sbjct: 146 QAEEIGYPVMLKSTAGGGGIGLQLCRSAADMPRLYDTVRRLALANFKDSGLFLEKYVAAA 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +        +  V          +  +       PA      +   +   A    +++
Sbjct: 206 RHIEVQIFGDGDGNVIALGERDCSAQRRNQKVIEETPAPNLEAGMRAALHEAAVRLGESV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
                   +F++D   RK ++LE+N       P +T            G    +L+  MV
Sbjct: 266 SYASAGTVEFIYDETERKFYFLEVNTRLQVEHP-VTE--------EVTGL---DLVEMMV 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RQAA 317


>gi|332709221|ref|ZP_08429187.1| biotin carboxylase [Lyngbya majuscula 3L]
 gi|332352030|gb|EGJ31604.1| biotin carboxylase [Lyngbya majuscula 3L]
          Length = 448

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENARFAEICADHQIAFIGPTPEAIRAMGDKSTAKETMQRAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +        I  P +IK   GG   G+ +++ D  +      +            
Sbjct: 138 LVSSEQEAHAIARQIGYPVMIKATAGGGGRGMRLVQDDSQLIKLFQAAQGEAQAAFGNGG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +             ++          P+ +   ++ +++ 
Sbjct: 198 VYIEKFIQRPRHIEIQILADSHGNAIHLGERDCSIQRRHQKLLEEAPSPVLDPELREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A +A ++I   G+   +FL D  S + +++E+N +
Sbjct: 258 NAAVMAAKSINYVGVGTVEFLLDA-SGEFYFMEMNTR 293


>gi|311030977|ref|ZP_07709067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus sp.
           m3-13]
          Length = 450

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/193 (16%), Positives = 64/193 (33%), Gaps = 18/193 (9%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +   + I  P +IK   GG   GI V + ++ +   +  +             
Sbjct: 138 IENINDGISIANDIGYPVIIKATAGGGGKGIRVARNEEELKKGISITQQEAATAFGNPGV 197

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQR 229
           Y++        +    +                ++          P+ +   +I  ++  
Sbjct: 198 YLEKFIEDFRHVEIQVMADGHGNTIHLGERDCSIQRRLQKLVEETPSPVLDEEIRAQMGD 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A  A +A+   G    +F++D  +RK +++E+N       P         EM    G  
Sbjct: 258 AAVKAAEAVDYMGAGTIEFIYDYQNRKFYFMEMNTRIQVEHP-------VTEM--VTGV- 307

Query: 285 FRELLLWMVEDAS 297
             +L+  M+  AS
Sbjct: 308 --DLIKEMIRVAS 318


>gi|300856883|ref|YP_003781867.1| pyruvate carboxylase [Clostridium ljungdahlii DSM 13528]
 gi|300436998|gb|ADK16765.1| pyruvate carboxylase [Clostridium ljungdahlii DSM 13528]
          Length = 1145

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 78/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + + L     D      +G   E+  +    +   I +         +  DK++
Sbjct: 65  LDIDEIIDIALKK-NVDAIHPG-YGFLSENPELAKKCKEAGIEFIGPTSDMMEMLGDKIK 122

Query: 96  SKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V    GVP  P +     T             P +IK   GG   G+ ++++++ + 
Sbjct: 123 SKIVAQKAGVPTIPGVQEAIKTEEEALKFAKFCGYPVMIKAADGGGGRGMRIVREEKDLV 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + + +       + Y++    +   +    L      +         ++      
Sbjct: 183 ESYNSAKNESRKAFGSEKIYIEKYIESPKHIEVQVLGDKYGNIVHLYERDCSIQRRHQKV 242

Query: 212 THVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+    +  ++          + +G       +FL D  +   +++E+N +
Sbjct: 243 IEFTPSLALSEEKRQQICEDALKIARTVGYTSAGTLEFLVD-KNGNHYFIEMNTR 296


>gi|297530754|ref|YP_003672029.1| pyruvate carboxylase [Geobacillus sp. C56-T3]
 gi|297254006|gb|ADI27452.1| pyruvate carboxylase [Geobacillus sp. C56-T3]
          Length = 1147

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/239 (11%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKAHDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 124 ARHAAMKAGIPVIPGSDGPVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +       +   ++GD   ++  +            + 
Sbjct: 184 EAFERAKSEAKAAFGSDDVYVEKLIEKPKHIEVQILGDHEGNIVHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++ K +   A    +++G       +FL      + +++E+N +
Sbjct: 240 HQKVVEVAPSVSLSDELRKRICEAAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|221638497|ref|YP_002524759.1| pyruvate carboxylase [Rhodobacter sphaeroides KD131]
 gi|221159278|gb|ACM00258.1| Pyruvate carboxylase [Rhodobacter sphaeroides KD131]
          Length = 1160

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 44/153 (28%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I  +  +   + +            E Y++
Sbjct: 150 MEEIKRQAAEIGYPLMLKASWGGGGRGMRPITSEAELADKVREGRREAEAAFGNGEGYLE 209

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L     A+         ++  +       PA    +  +        
Sbjct: 210 KMIQRARHVEVQILGDKFGAIYHLYERDCTVQRRNQKVVERAPAPYLTEEQRAEICELGR 269

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +        +FL D  S K +++E+N +
Sbjct: 270 RICAHVNYECAGTVEFLMDMDSEKFYFIEVNPR 302


>gi|126338196|ref|XP_001369965.1| PREDICTED: similar to 3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit [Monodelphis domestica]
          Length = 738

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ + + ++     L  +       +N    L+ +     
Sbjct: 207 HARKIGYPIMIKAVRGGGGKGMRIARSEEEFQEQLESARREAKKSFNDDAMLIEKFVDTP 266

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I L++ +++   A  A
Sbjct: 267 RHVEVQVFGDQHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIDLEVRRKLGEAAVRA 322

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ DP +   +++E+N       P         EM      +  +L+
Sbjct: 323 AKAVNYVGAGTVEFIMDP-NHNFYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 369

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 370 EWQLRIAAGEK 380


>gi|59712994|ref|YP_205770.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio fischeri
           ES114]
 gi|59481095|gb|AAW86882.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio fischeri
           ES114]
          Length = 447

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEAKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVEAIAMTRAEAKACF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNEMVYMEKFLENPRHIEVQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|197295121|ref|YP_002153662.1| urea amidolyase urea carboxylase subunit [Burkholderia cenocepacia
           J2315]
 gi|195944600|emb|CAR57204.1| urea amidolyase, urea carboxylase subunit [Burkholderia cenocepacia
           J2315]
          Length = 1206

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 55/183 (30%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +       +     +      Y++       
Sbjct: 148 ADAIGYPVMLKSTAGGGGIGMSLCRDAAQLGAAFESVARLGAANFAHAGVYLEKFVEHAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA    D     +   A    +A+G
Sbjct: 208 HIEVQIFGDGRGGALALGERDCSVQRRNQKVIEETPAPDLTDAERDALHASAVRLARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YASAGTVEFVFDASTRQFYFLEVNTR----------LQVEHCVTEAVTGV---DLVEWMI 314

Query: 294 EDA 296
             A
Sbjct: 315 LQA 317


>gi|86450131|gb|ABC96254.1| carbamoylphosphate synthetase [Chelifera sp. JKM-2006]
          Length = 1297

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGIFAKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEQVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVIEALDAAEKLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|78776821|ref|YP_393136.1| biotin carboxylase-like [Sulfurimonas denitrificans DSM 1251]
 gi|78497361|gb|ABB43901.1| Pyruvate carboxylase biotin carboxylase subunit [Sulfurimonas
           denitrificans DSM 1251]
          Length = 485

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/279 (17%), Positives = 91/279 (32%), Gaps = 33/279 (11%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D DR + L L     D      +G   E+       E   I +        AL  DKM 
Sbjct: 64  LDYDRIITLAL-KAGCDAIHPG-YGFLSENAEFAQSCEDRGIIFIGPKPAHIALFGDKMA 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK  +   GVPV       I+           I  P +IK   GG   G+ ++K  +   
Sbjct: 122 SKVAMREIGVPVLEGTDEPIVDKAEGGKIAAKIGFPIIIKAAFGGGGRGMRIVKSAKLFD 181

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                        +  GD  + +   +   +   V+ D   +V  +            K 
Sbjct: 182 EMFDSATNEAKKYFGKGDVFIEKYVENPRHIEIQVVADKYGNVVHLGERDCSIQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-- 264
             +  +  L      ++Y+   +        +G   +   ++L D     ++++E+N   
Sbjct: 242 IEIAPSPRLNPAARKELYRISTKAMLK----LGYESVGTVEYLLDENDN-IYFIEMNTRV 296

Query: 265 ---QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               P +T +            S  +++  M+E A   +
Sbjct: 297 QVEHP-VTEI-----------ISGIDIIQRMIEIAEGDK 323


>gi|83949684|ref|ZP_00958417.1| acetyl-CoA carboxylase [Roseovarius nubinhibens ISM]
 gi|83837583|gb|EAP76879.1| acetyl-CoA carboxylase [Roseovarius nubinhibens ISM]
          Length = 449

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 67/221 (30%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E  ++ +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHDLTFIGPTAEHIRIMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P ++K   GG   G+ V      I      + +     + + +
Sbjct: 137 GVPDVESAKALCAEIGYPVIVKATAGGGGRGMKVAMSAAEIESAFRTARTEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGGAVHLGERDCSLQ----RRHQKVFEEAPGPCISQEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I   G    +FL+     + +++E+N +
Sbjct: 253 DRIGKICADAVARINYTGAGTIEFLY--EKGEFYFIEMNTR 291


>gi|316966120|gb|EFV50744.1| acetyl-CoA carboxylase [Trichinella spiralis]
          Length = 2313

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/238 (13%), Positives = 80/238 (33%), Gaps = 18/238 (7%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
               +  I         L             G+     +V    ++  +P++ SG+    
Sbjct: 225 NKHDIIFIGPPAKAMWSL-------------GDKIASSIVAQTAKVPTLPWSGSGLTIPW 271

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
              + + +  +     +    ++      +     I  P +IK  +GG   GI       
Sbjct: 272 KRGENVSNGSLYVPPSLYAQATVSTVEEGIKIASRIGLPLMIKASEGGGGKGIRKCVNMD 331

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             P    Q  +   G  + I +   G   L   ++ D   +   +            K  
Sbjct: 332 EFPTQFRQVQAEVPGSPIFIMKLATGARHLEVQLLADCYGNAVSLFGRDCSIQRRHQKII 391

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               T V P+    ++++++++ A    + +G       ++L+ P +++ ++LE+N +
Sbjct: 392 EEAPTSVAPS----ELFEQMEKDAVKLAKMVGYVSAGTVEYLYLPETQRYYFLELNPR 445


>gi|295133893|ref|YP_003584569.1| carbamoyl-phosphate synthase large subunit [Zunongwangia profunda
           SM-A87]
 gi|294981908|gb|ADF52373.1| carbamoyl-phosphate synthase large subunit [Zunongwangia profunda
           SM-A87]
          Length = 950

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/304 (13%), Positives = 90/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G +   I         D              +S+  +L  H   D   
Sbjct: 29  SGTQSLRSLREDGIETILINSNPATIMTDPSMADHVYLKPLTTKSIIEILEAHPNIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCP 109
             + G    +  ++A      +  ++      I A  ++ D+ + KQ++   G+P     
Sbjct: 89  PTMGGQTALNLCIEADDKGIWKDYDVKLIGVDIDAINITEDREQFKQLMERIGIPVAPAK 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++       +       P VI+        G   + K +     L +    +   ++LI+
Sbjct: 149 TVTSYLQGKEVAQEFGFPLVIRASFTLGGSGAGFVHKAEDFDEMLTRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDSAFQRMRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P    +++ +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEEIYAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 80/255 (31%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLERYGIKIIGTSFEALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    +    P   +       +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSTLLQKNDIPYPEFGTAENAEEALKLADQLDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            Q +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KQELEETVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F       KV+ +E N +
Sbjct: 800 ---DSNALLPPFTLGDLVLQQIKDHTRKIALALNTVGLINIQFAI--KEDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|260576874|ref|ZP_05844857.1| pyruvate carboxylase [Rhodobacter sp. SW2]
 gi|259020911|gb|EEW24224.1| pyruvate carboxylase [Rhodobacter sp. SW2]
          Length = 1153

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
            T      +  P ++K   GG   G+  I   + +   + +            E Y++ +
Sbjct: 146 DTKRQAAAVGYPLMLKASWGGGGRGMRPINGPEELADKVREGRREAEAAFGNGEGYLEKM 205

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234
            L    +    L   +  +         ++  +       PA         EV  L    
Sbjct: 206 ILRARHVEVQILGDKQGHIYHLYERDCTVQRRNQKVVERAPAPYLTPAQRAEVCELGRRI 265

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +G       +FL D   +K +++E+N +
Sbjct: 266 CAHVGYECAGTVEFLMDMDDQKFYFIEVNPR 296


>gi|261419276|ref|YP_003252958.1| pyruvate carboxylase [Geobacillus sp. Y412MC61]
 gi|319766092|ref|YP_004131593.1| pyruvate carboxylase [Geobacillus sp. Y412MC52]
 gi|261375733|gb|ACX78476.1| pyruvate carboxylase [Geobacillus sp. Y412MC61]
 gi|317110958|gb|ADU93450.1| pyruvate carboxylase [Geobacillus sp. Y412MC52]
          Length = 1147

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 76/239 (31%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKAHDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 124 ARHAAMKAGIPVIPGSDGPVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +       +   ++GD   ++  +            + 
Sbjct: 184 EAFERAKSEAKAAFGSDDVYVEKLIEKPKHIEVQILGDHEGNIVHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++ + +  +A    +++G       +FL      + +++E+N +
Sbjct: 240 HQKVVEVAPSVSLSDELRERICEVAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|15679899|ref|NP_277017.1| pyruvate carboxylase subunit A [Methanothermobacter
           thermautotrophicus str. Delta H]
 gi|6685809|sp|O27939|PYCA_METTH RecName: Full=Pyruvate carboxylase subunit A; AltName: Full=Pyruvic
           carboxylase A
 gi|2623051|gb|AAB86377.1| biotin carboxylase [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 491

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 78/280 (27%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAH-----------------LKPDLAFN----- 56
                 A  + G K   +  +     +                    L+ D         
Sbjct: 14  AIRVMRACRELGIKSVAVYSEADKNALFTRYADEAYEIGKPAPSQSYLRIDRILEVAEKA 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
               +H   G   E+  +    E   I              DK+ SK+++   GVP    
Sbjct: 74  GAEAIHPGYGFLAENPRLGEECEKQGIKLIGPKGSVIEAMGDKITSKKLMKKAGVPVIPG 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +            I  P +IK   GG  +G+  + ++  +   +  + S       
Sbjct: 134 TDQGVSDPDEAARIADSIGYPVIIKASAGGGGIGMRAVYEEDELIRAMESTQSVAASAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               Y++        +    +      V         ++          P   +  ++ +
Sbjct: 194 DPTVYIEKYLERPRHIEFQVMADESGNVIHLADRECSIQRRHQKLIEEAPSPIMTPELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A  A + IG       +FL+   +   ++LE+N +
Sbjct: 254 RMGSAAVKAAEYIGYENAGTVEFLY--SNGDFYFLEMNTR 291


>gi|317479024|ref|ZP_07938167.1| carbamoyl-phosphate synthase subunit L [Bacteroides sp. 4_1_36]
 gi|316904779|gb|EFV26590.1| carbamoyl-phosphate synthase subunit L [Bacteroides sp. 4_1_36]
          Length = 355

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 53/145 (36%), Gaps = 2/145 (1%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P ++K   GG   G+ +I  +  +      + S +         Y++        
Sbjct: 1   NEIGYPVMLKASMGGGGKGMRLIHNESEVVEAYNTARSESMSSFGDDTVYLEKFVEEPHH 60

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240
           +    L      V         ++  +       P+     ++ +E+   A  A +A+  
Sbjct: 61  IEFQILGDNHGNVIHLFDRECSVQRRNQKVVEESPSPFLTPELRREMGEKAVAAAKAVNY 120

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +FL D  +R+ ++LE+N +
Sbjct: 121 SGAGTIEFLVD-KNRRFYFLEMNTR 144


>gi|309366204|emb|CAP21836.2| hypothetical protein CBG_00376 [Caenorhabditis briggsae AF16]
          Length = 1665

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 77/250 (30%), Gaps = 17/250 (6%)

Query: 25  ALEDAGFKVSQID---VDRSVGLVLAHLKPDLAFNVLHGNFGEDG-----LVQAILELLE 76
           AL+        +       +  L     K D+ F    G   +        + + +    
Sbjct: 107 ALKS-RVDAVYVGWGHASENPELARRLRKNDIIFI---GPSEKSIVASGDKIISTIIAQS 162

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           I           + ++K    +                      ++ I  P +IK  +GG
Sbjct: 163 IGMPTVTWSGRDVKVEKCVDFEHFHELRAQATIKSAKEGLEAIEKYGIGVPMMIKASEGG 222

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195
              GI   +K +       +         + + + ++G   +   ++GD   +V  ++  
Sbjct: 223 GGKGIRKCEKMEDFERLFKEVEIEVPNSPIFLMKCMEGARHVEIQIIGDKHGEVIALSSR 282

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                    K        ++P     +I K +++ A      +        + LF P + 
Sbjct: 283 DCTIQRRCQKVIEEAPASIVPE----EIMKNMKKDAIAFANFVDYYSAGTVELLFVPSTN 338

Query: 256 KVFWLEINVQ 265
           + F+LE+N +
Sbjct: 339 QYFFLELNPR 348


>gi|159491460|ref|XP_001703683.1| predicted protein [Chlamydomonas reinhardtii]
 gi|158270532|gb|EDO96374.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 570

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 76/264 (28%), Gaps = 41/264 (15%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV-SSCGVP 106
              PD+  N+  G + ED   + ++E LE          +A         ++     GV 
Sbjct: 92  KATPDVFLNLCDGGWDEDRAGKEVVEALERLNLPYTGANAAFYEPSKIEMKMAAHYYGVK 151

Query: 107 VCPSILVNRFTMDSQHL--------------ISPPYVIKPLKG-GSSLGIIVIKKDQSIP 151
           V   + +                        +  P ++K   G GS       K      
Sbjct: 152 VPAWVHIQCGVGRRGVEAGLEAVLAPPSRGGLRFPLIVKHPSGYGSVGMTKDSKVHNEEQ 211

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTC--------------------GVMGDASLDVTE 191
           L    +         L+E+++ G E T                           +    E
Sbjct: 212 LRAQVARFVGSFGGALVEEFIQGREFTVLVVEEPGAAADVGGDTDPDLTSFRPVAYTPVE 271

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
            A    + + +     +   +         ++ + ++  A    +A       R DF  D
Sbjct: 272 CAFGPGEDFKHFDLKWTDYESLSWRPCADQELSERLKVAACDTFRATRGVSYGRCDFRVD 331

Query: 252 PLSRKVFWLEINVQPGMTPVSIFP 275
               +++ LEIN   G+    ++P
Sbjct: 332 GA-GEIYLLEINPNCGV----LYP 350


>gi|115523240|ref|YP_780151.1| urea amidolyase related protein [Rhodopseudomonas palustris BisA53]
 gi|115517187|gb|ABJ05171.1| urea amidolyase related protein [Rhodopseudomonas palustris BisA53]
          Length = 1182

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 57/185 (30%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +   + ++                    Y++       
Sbjct: 147 AARIGFPLMLKSTAGGGGIGMQLCHDEATLRDRFATVQRTARASFGDARVYLERFVAVAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    + +   + + A    Q++ 
Sbjct: 207 HIEVQIFGDGQGRVVALGERDCSLQRRNQKVVEETPAPGISEAMRTRLHQAAVALGQSVK 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++D      ++LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YESAGTVEFIYDVEREDFYFLEVNTRLQVEHP-VTE--------AVFGV---DLVEWMVR 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 QAAGD 319


>gi|268534458|ref|XP_002632360.1| Hypothetical protein CBG00376 [Caenorhabditis briggsae]
          Length = 1582

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/250 (13%), Positives = 77/250 (30%), Gaps = 17/250 (6%)

Query: 25  ALEDAGFKVSQID---VDRSVGLVLAHLKPDLAFNVLHGNFGEDG-----LVQAILELLE 76
           AL+        +       +  L     K D+ F    G   +        + + +    
Sbjct: 107 ALKS-RVDAVYVGWGHASENPELARRLRKNDIIFI---GPSEKSIVASGDKIISTIIAQS 162

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           I           + ++K    +                      ++ I  P +IK  +GG
Sbjct: 163 IGMPTVTWSGRDVKVEKCVDFEHFHELRAQATIKSAKEGLEAIEKYGIGVPMMIKASEGG 222

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVP 195
              GI   +K +       +         + + + ++G   +   ++GD   +V  ++  
Sbjct: 223 GGKGIRKCEKMEDFERLFKEVEIEVPNSPIFLMKCMEGARHVEIQIIGDKHGEVIALSSR 282

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                    K        ++P     +I K +++ A      +        + LF P + 
Sbjct: 283 DCTIQRRCQKVIEEAPASIVPE----EIMKNMKKDAIAFANFVDYYSAGTVELLFVPSTN 338

Query: 256 KVFWLEINVQ 265
           + F+LE+N +
Sbjct: 339 QYFFLELNPR 348


>gi|321315247|ref|YP_004207534.1| pyruvate carboxylase [Bacillus subtilis BSn5]
 gi|320021521|gb|ADV96507.1| pyruvate carboxylase [Bacillus subtilis BSn5]
          Length = 1148

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    K D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P +IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSESEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 EAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIEVNPR 296


>gi|291484034|dbj|BAI85109.1| pyruvate carboxylase [Bacillus subtilis subsp. natto BEST195]
          Length = 1148

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    K D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P +IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSESEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 EAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIEVNPR 296


>gi|316932504|ref|YP_004107486.1| urea carboxylase [Rhodopseudomonas palustris DX-1]
 gi|315600218|gb|ADU42753.1| urea carboxylase [Rhodopseudomonas palustris DX-1]
          Length = 1182

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ +   + ++                    Y++        +
Sbjct: 149 RIGFPLMLKSTAGGGGIGMQLCHDEATLRERFATVQRTARASFGDARVYLERFVADARHI 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCR 241
                   +  V         L+  +       PA    D  +  + + A    Q++   
Sbjct: 209 EVQIFGDGQGNVIALGERDCSLQRRNQKVVEETPAPGISDEMRARLHQAAVALGQSVAYE 268

Query: 242 GISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +F++D    + ++LE+N       P +T         A  G    +L+ WMV  A
Sbjct: 269 SAGTVEFIYDVARDEFYFLEVNTRLQVEHP-VTE--------AVFGV---DLVEWMVRQA 316

Query: 297 SCL 299
           +  
Sbjct: 317 AGD 319


>gi|254293475|ref|YP_003059498.1| carbamoyl-phosphate synthase, large subunit [Hirschia baltica ATCC
           49814]
 gi|254042006|gb|ACT58801.1| carbamoyl-phosphate synthase, large subunit [Hirschia baltica ATCC
           49814]
          Length = 1105

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/320 (12%), Positives = 96/320 (30%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G+++  ++ +                       V  ++A  +PD    
Sbjct: 29  SGVQAIKALKEEGYRIILVNSNPATIMTDPELADATYIEPITPEFVAKIIAIERPDAVLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +          LE   +    +   A   + D+ + +  +++ G+    S++
Sbjct: 89  TMGGQTALNTALALDKDGTLEKYNVELIGAKADAIEKAEDREKFQVAMNNIGLENPKSVI 148

Query: 113 VN--------------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           V+                    +   D+   I  P +I+P       G  V    +    
Sbjct: 149 VSAPKTVDANGNETGKDILGGLKECFDALDEIGLPAIIRPAFTLGGTGGGVANNREEYEH 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                   +   Q+LI++ + G +     +   + D   I     +     +      + 
Sbjct: 209 FCRSGMEASPTGQILIDESLLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F   P + ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQIMRNASIAVLREIGVETGGSNVQFAVHPETGRLVVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKVAAKL 344



 Score = 42.2 bits (97), Expect = 0.090,   Method: Composition-based stats.
 Identities = 27/169 (15%), Positives = 59/169 (34%), Gaps = 10/169 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
              +  P +++P        + +      +     ++   + G  LL+++Y  D IE+  
Sbjct: 738 AERVGYPVMVRPSNVLGGRAMEIAHDITDLKDYGAKAIVASEGGNLLVDRYLSDAIEVDV 797

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +   I  E+ R A +   A+ 
Sbjct: 798 DAICDGETTHVAGIMQHIEEAG---VHSGDSACSIPPYSLSQPIQDELARQARVLASALN 854

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    F       ++F LE N +   T     P +A   G     +
Sbjct: 855 VKGLMNVQFAV--KDDEIFVLEANPRASRT----VPFVAKAVGKPLASI 897


>gi|16078550|ref|NP_389369.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309356|ref|ZP_03591203.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313683|ref|ZP_03595488.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. NCIB
           3610]
 gi|221318605|ref|ZP_03599899.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322879|ref|ZP_03604173.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. SMY]
 gi|46397656|sp|Q9KWU4|PYC_BACSU RecName: Full=Pyruvate carboxylase; AltName: Full=Pyruvic
           carboxylase; Short=PYC
 gi|2633857|emb|CAB13359.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 1148

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    K D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P +IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSESEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 EAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIEVNPR 296


>gi|2224775|emb|CAB09721.1| pyruvate carboxylase [Bacillus subtilis subsp. subtilis str. 168]
          Length = 384

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 79/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    K D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIDIAKRNKVDAIHPG-YGFLSENIHFARRCEEEGIVFIGPKSEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P +IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQANGYPIIIKASLGGGGRGMRIVRSESEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 EAYERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKQGNVVHLFERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLSPELRDQICEAAVALAKNVNYINAGTVEFLV--ANNEFYFIEVNPR 296


>gi|56419614|ref|YP_146932.1| pyruvate carboxylase [Geobacillus kaustophilus HTA426]
 gi|56379456|dbj|BAD75364.1| pyruvate carboxylase [Geobacillus kaustophilus HTA426]
          Length = 1147

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKAHDVDAIHPG-YGFLSENIQFAKRCREEGIIFIGPNEEHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      G+PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 124 ARHAAMKAGIPVIPGSDGPVGGLEDVVRFAETHGYPIIIKAALGGGGRGMRIVRSKSEVK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     +   D  + +       +   ++GD   ++  +            + 
Sbjct: 184 EAFERAKSEAKAAFGSDDVYVEKLIEKPKHIEVQILGDHEGNIVHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++ + +   A    +++G       +FL      + +++E+N +
Sbjct: 240 HQKVVEVAPSVSLSDELRERICEAAVRLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|156838977|ref|XP_001643185.1| hypothetical protein Kpol_448p15 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113783|gb|EDO15327.1| hypothetical protein Kpol_448p15 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 2219

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 462 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVILHERPDAIYV 521

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV--- 113
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 522 TFGGQTALSVGIEMKDEFEALGVKVLGTPIDTIITTEDRELFANAIDEINEKCAKSHAAS 581

Query: 114 -NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 582 SVEEAVTAANDIGYPVIVRAAFALGGLGSGFANNEKELID--LCNVAFASSPQVLVERSM 639

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 640 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 698

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 699 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 748


>gi|83593652|ref|YP_427404.1| pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83576566|gb|ABC23117.1| Pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 1146

 Score = 52.2 bits (123), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 6/231 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    K D      +G   ED           I +            +K+ ++ +
Sbjct: 68  DDIIDIATREKIDAIHPG-YGFLSEDPAFAEACAAAGIRFIGPTPETLRQLGNKVAARNL 126

Query: 100 VSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             S GVPV P+                 I  P ++K   GG   G+  I  ++ +   + 
Sbjct: 127 ARSLGVPVMPATGPLPTDPGVIHRLAKDIGYPVMLKASWGGGGRGMRPIDSEEHLLDAVT 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            S           E Y++ +      +    L  +   +         ++          
Sbjct: 187 TSRREAAAAFGKDEVYLEKLVRAARHVEVQLLGDSHGTLVHLFERDCSIQRRHQKVIERA 246

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA     +  + +   A    +A G  G    +FL D  +   F++E+N +
Sbjct: 247 PAPYLDSETRRRLTDAALKIGRATGYVGAGTVEFLMDVATNDFFFIEVNPR 297


>gi|239637664|ref|ZP_04678636.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           warneri L37603]
 gi|239596882|gb|EEQ79407.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           warneri L37603]
          Length = 452

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSHESIQKMGIKDVAKAEMIKANVPVVPGSEGLVHNI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  +   V         ++          P+ I  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILSEETRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLNDDQFYFMEMNTR 292


>gi|195997217|ref|XP_002108477.1| hypothetical protein TRIADDRAFT_18834 [Trichoplax adhaerens]
 gi|190589253|gb|EDV29275.1| hypothetical protein TRIADDRAFT_18834 [Trichoplax adhaerens]
          Length = 703

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 47/150 (31%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K + GG   G+ ++  +      L  +       +N    ++ +   +  
Sbjct: 171 ASRIGYPVMLKAVCGGGGKGMRIVMNEGEFDQALESARRESLKSFNDDKMIVEKYIEEPR 230

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   ++           K         L   I  +I     R A    
Sbjct: 231 HVEVQVFADQHGNAVYLSERDCSVQRRHQKIIEEAPAPGLSESIRHEIGAAAVRAAKAV- 289

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +F+ D    K F++E+N +
Sbjct: 290 ---NYVGAGTVEFIMDKHK-KFFFMEMNTR 315


>gi|158313546|ref|YP_001506054.1| carbamoyl phosphate synthase large subunit [Frankia sp. EAN1pec]
 gi|158108951|gb|ABW11148.1| carbamoyl-phosphate synthase, large subunit [Frankia sp. EAN1pec]
          Length = 1136

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRSVG-LVLAHLKPDLAFN 56
           SG      L   G +V  ++                    +   +   ++   +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITPDIVTKIIERERPDAILA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + I A     D+   K +V+S       S +
Sbjct: 89  TMGGQTALNTAVALHDAGVLERFGVRLIGANIDAIRSGEDRQAFKDIVASVDGETARSAI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +    S P V++P       G         +        + +   ++L+E+
Sbjct: 149 CTTVAECLVAAEEFSYPVVVRPSYTLGGAGSGFAHDPDELRRMSADGLAASPTTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELELMRDRADNVVVVCSIENIDPMGVHTGDSVTVAPAMTLTDREYQRMRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMRAVGVDAGGCNIQFAVDPATGRLVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|227498533|ref|ZP_03928677.1| pyruvate carboxylase [Acidaminococcus sp. D21]
 gi|226903989|gb|EEH89907.1| pyruvate carboxylase [Acidaminococcus sp. D21]
          Length = 1143

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/244 (13%), Positives = 76/244 (31%), Gaps = 18/244 (7%)

Query: 34  SQIDVDRSVGLVLA---HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             +D    +  ++        D      +G   E+  +        I +    I    + 
Sbjct: 58  KPVDAYLDIEEIIRVAHEHHVDAIHPG-YGFLSENADLARRCAEEGITFIGPHIDHLTMF 116

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ ++      G+   P     ++           +  P ++K + GG   G+ +   
Sbjct: 117 GDKVNARAQAKKAGIRFIPGSDGPVMNFAEVEKFAKDVGFPIMLKAVNGGGGRGMRMAHC 176

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +     ++ S     + + +  L +   +   +   +MGD   +V  +         
Sbjct: 177 MSDLKDAYERAKSEAKLAFGNDEIYLEKYIRNPKHVEVQIMGDEHGNVFHLYERDCSIQR 236

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +     LP K+  +I       A    + +        +FL  P     +++E
Sbjct: 237 RHQKVVEIAPAFALPRKLRQEICN----AAVTLMKNVNYVNAGTVEFLVTP-DGDFYFIE 291

Query: 262 INVQ 265
           +N +
Sbjct: 292 VNPR 295


>gi|187919926|ref|YP_001888957.1| urea carboxylase [Burkholderia phytofirmans PsJN]
 gi|187718364|gb|ACD19587.1| urea carboxylase [Burkholderia phytofirmans PsJN]
          Length = 1203

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 57/183 (31%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +       +     +      YV+       
Sbjct: 148 AESIGYPVMLKSTAGGGGIGMSLCRDAAQLEGVFASVARLGEANFANAGVYVEKFVENAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         ++  +       PA          +   A    QA+ 
Sbjct: 208 HIEVQVFGDGKGGVISLGERDCSVQRRNQKVIEETPAPGLTHAERSALHASAVRLAQAVK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YKSAGTVEFVFDADTRRFYFLEVNTR----------LQVEHCVTEEITGI---DLVEWMI 314

Query: 294 EDA 296
            +A
Sbjct: 315 REA 317


>gi|254242442|ref|ZP_04935764.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa 2192]
 gi|126195820|gb|EAZ59883.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa 2192]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 82/290 (28%), Gaps = 45/290 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK  A  L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVAIELQRLGCEVIAVDRYGNAPAMQVAHRSHVISMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   KP      +        LV+   E   +  T      +       R      
Sbjct: 67  LRAVIEQEKPHYIVPEIE-AIATATLVELEAEGYTVVPTARAAQLTMNREGIRRLAAEEL 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                                 +  P V+KP+   S  G  V+K    +      +    
Sbjct: 126 GLPTSPYHFADTFEDYRRGVERVGYPCVVKPIMSSSGKGQSVLKGPDDLQAAWDYAQEGG 185

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLP 216
              +        G  +      D   ++T + V   D  ++                  P
Sbjct: 186 RAGK--------GRVI-VEGFIDFDYEITLLTVRHVDGTTFCAPIGHRQVKGDYHESWQP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +      E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 237 QAMSAQALAESERVARAVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|15598946|ref|NP_252440.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa PAO1]
 gi|107103266|ref|ZP_01367184.1| hypothetical protein PaerPA_01004335 [Pseudomonas aeruginosa PACS2]
 gi|116051749|ref|YP_789412.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|218889971|ref|YP_002438835.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa LESB58]
 gi|254236660|ref|ZP_04929983.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa C3719]
 gi|313109161|ref|ZP_07795131.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa 39016]
 gi|81857051|sp|Q9HXP3|PURT_PSEAE RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|122260892|sp|Q02RM4|PURT_PSEAB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788776|sp|B7UYK0|PURT_PSEA8 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|9949920|gb|AAG07138.1|AE004794_3 phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa PAO1]
 gi|115586970|gb|ABJ12985.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|126168591|gb|EAZ54102.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa C3719]
 gi|218770194|emb|CAW25956.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa LESB58]
 gi|310881633|gb|EFQ40227.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa 39016]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/290 (15%), Positives = 82/290 (28%), Gaps = 45/290 (15%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK  A  L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVAIELQRLGCEVIAVDRYGNAPAMQVAHRSHVISMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   KP      +        LV+   E   +  T      +       R      
Sbjct: 67  LRAVIEQEKPHYIVPEIE-AIATATLVELEAEGYTVVPTARAAQLTMNREGIRRLAAEEL 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                                 +  P V+KP+   S  G  V+K    +      +    
Sbjct: 126 GLPTSPYHFADTFEDYRRGVERVGYPCVVKPIMSSSGKGQSVLKGPDDLQAAWDYAQEGG 185

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLP 216
              +        G  +      D   ++T + V   D  ++                  P
Sbjct: 186 RAGK--------GRVI-VEGFIDFDYEITLLTVRHVDGTTFCAPIGHRQVKGDYHESWQP 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +      E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 237 QAMSAQALAESERVARAVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|308173451|ref|YP_003920156.1| pyruvate carboxylase [Bacillus amyloliquefaciens DSM 7]
 gi|307606315|emb|CBI42686.1| pyruvate carboxylase [Bacillus amyloliquefaciens DSM 7]
 gi|328553620|gb|AEB24112.1| pyruvate carboxylase [Bacillus amyloliquefaciens TA208]
 gi|328911585|gb|AEB63181.1| pyruvate carboxylase [Bacillus amyloliquefaciens LL3]
          Length = 1148

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 80/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKRNGVDAIHPG-YGFLSENIQFARRCEEEGIVFIGPTSAHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P         +       +   P++IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLKDVEQFAKVHGFPFIIKASLGGGGRGMRIVRNENELK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 DSFERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKEGNVVHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  E+   A    + +G       +FL      + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLQPELRDEICEAAVALAKNVGYINAGTVEFLV--ADGEFYFIEVNPR 296


>gi|298293118|ref|YP_003695057.1| pyruvate carboxylase [Starkeya novella DSM 506]
 gi|296929629|gb|ADH90438.1| pyruvate carboxylase [Starkeya novella DSM 506]
          Length = 1154

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 6/231 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V    K D      +G   E        E   I +            +K+ ++ +
Sbjct: 74  DEVIRVAKEAKVDAIHPG-YGFLSESPEFAEACEEAGIVFIGPKPATMRTLGNKVAARNL 132

Query: 100 VSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             S GVPV P+                 +  P ++K   GG   G+  I+ +  +   + 
Sbjct: 133 AISVGVPVMPATDPLPDDPAFILEAARKVGYPVMLKASWGGGGRGMRPIESEDKLLDAVT 192

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +           E Y++ +      +    L  T   +         ++  +       
Sbjct: 193 TAKREAKAAFGKDEVYLEKLVRRARHVEVQILGDTHGNLVHVYERDCSIQRRNQKVIERA 252

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA    +   K +   A    +A    G    +FL D  +   +++E+N +
Sbjct: 253 PAPYVDEATRKGLTDAALAIGRATDYIGAGTVEFLMDADTGAFYFIEVNPR 303


>gi|257487166|ref|ZP_05641207.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tabaci ATCC 11528]
 gi|331009216|gb|EGH89272.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tabaci ATCC 11528]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPDFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVARAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|195113267|ref|XP_002001189.1| GI10647 [Drosophila mojavensis]
 gi|193917783|gb|EDW16650.1| GI10647 [Drosophila mojavensis]
          Length = 695

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 61/181 (33%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 170 AAKIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESLKAFGDSSVLLERYVRSPR 229

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 230 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 289

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 290 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 339

Query: 297 S 297
           +
Sbjct: 340 A 340


>gi|86450125|gb|ABC96251.1| carbamoylphosphate synthetase [Metachela collusor]
          Length = 1301

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTVEYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 427 TFGGQTALNCGVELDKAGVFAKYNVKIMGTPIQSIIETEDRKIFAERVAQIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 487 VYSVNEALDAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKHALAHSNQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|71735232|ref|YP_273607.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|289625901|ref|ZP_06458855.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. aesculi str. NCPPB3681]
 gi|289646201|ref|ZP_06477544.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. aesculi str. 2250]
 gi|298488269|ref|ZP_07006302.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|123747688|sp|Q48LW5|PURT_PSE14 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|71555785|gb|AAZ34996.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298157208|gb|EFH98295.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320323183|gb|EFW79272.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. glycinea str. B076]
 gi|320329546|gb|EFW85535.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330867519|gb|EGH02228.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. aesculi str. 0893_23]
 gi|330874816|gb|EGH08965.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. glycinea str. race 4]
 gi|330894526|gb|EGH27187.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPDFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVARAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|33595307|ref|NP_882950.1| pyruvate carboxylase [Bordetella parapertussis 12822]
 gi|33565384|emb|CAE36189.1| putative pyruvate carboxylase [Bordetella parapertussis]
          Length = 1167

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +   +     +  P ++K   GG   G+  I  +  +   +  +           E Y
Sbjct: 143 HDDAACLRLAREVGYPLMLKASWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDEVY 202

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           ++ +      +    L      +         ++  +       PA    D  ++   + 
Sbjct: 203 LEKLVQRAHHVEVQVLGNQHGNLVHVFERDCSVQRRNQKVIERAPAPYLGDAGRQALFQA 262

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A    + +G       +FL D  +   +++E+N +
Sbjct: 263 ALTLTRGVGYTHAGTVEFLMDADTGNFYFIEVNPR 297


>gi|332818480|ref|XP_516898.3| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial [Pan troglodytes]
          Length = 725

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|297538811|ref|YP_003674580.1| phosphoribosylglycinamide formyltransferase 2 [Methylotenera sp.
           301]
 gi|297258158|gb|ADI30003.1| phosphoribosylglycinamide formyltransferase 2 [Methylotenera sp.
           301]
          Length = 403

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 83/285 (29%), Gaps = 30/285 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                     D+++  ++A  KP L    +
Sbjct: 23  GKEVIIALQRLGVEVIAVDRYKNAPGHQVAHRAYTIDMTDDKALRDLIAQEKPHLIVPEI 82

Query: 59  HG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
              N      V++      IP   +  L       +  + + +S    P   +       
Sbjct: 83  EALNTNTLADVESSGIATVIPTVKAVQLTMNREGIRRLAAEELSLPTSPYAFARSEAELQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-- 175
                 I  P  IKP    S  G   I     +        + + G        V+G   
Sbjct: 143 AAIDAGIGYPCFIKPTMSSSGKGQSRITNASEVKTA--WDYAASGGRVNQGVVIVEGQID 200

Query: 176 -ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   + +               ++          P  +     +E +R+A   
Sbjct: 201 FDYEITLLTVRAKNAAGETQTYFCEPIGHVQEKGDYVESWQPQAMTTGALQESKRIAKAV 260

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             ++G  G+   +        KV++ E++ +P      +    + 
Sbjct: 261 TDSLGGLGLFGVELFI--KGDKVWFSEVSPRP--HDTGMVTMASQ 301


>gi|229917791|ref|YP_002886437.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
 gi|229469220|gb|ACQ70992.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium sp.
           AT1b]
          Length = 1006

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDR---------------------SVGLVLAHLKPDLAFN 56
           SG     AL +AG +V  ++ +                          ++   +P     
Sbjct: 24  SGTQACQALREAGCEVVLLNSNPATIMTDPGMADATYIEAMTVQKATEIIEKERPTHVLA 83

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G          +         +E+  T    +      ++ + K  + +  +P   +
Sbjct: 84  TVGGQTALNLALDLEEAGVLTQYGIELLGTSLDTIRDGEDRERFKQKMELLNEPIPTSTT 143

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I               P +++P       G  +   +        +    +   Q L+E+
Sbjct: 144 IETIEELTAFIETTGVPLIVRPAFTLGGTGGGIAMTEDEAYAMARRGLEASPISQCLVEK 203

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I V   +       ++  +        +   +++ ++  
Sbjct: 204 SIAG-YKEFEYEVMRDAFGTCIIVCNMENIDPVGVHTGDSVVFAPAQTLSDQMHQTLRSA 262

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           AF     +G  G     F   P   + + +E+N  P ++  S     +   GY   ++  
Sbjct: 263 AFRIVSELGVIGGCNIQFAVHPTQSEYYVIEVN--PRVSRSS--ALASKATGYPIAKIAT 318

Query: 291 WM 292
            +
Sbjct: 319 RL 320



 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/288 (13%), Positives = 92/288 (31%), Gaps = 38/288 (13%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL+  G +   I+ +                       V  VL             G  G
Sbjct: 573 ALQKLGVETIMINNNPETVSTDFSIADKLYVEPLTSEDVIHVLEAEGCRDVLIQFGGQTG 632

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +       +    +  +      ++                 +       ++   
Sbjct: 633 IALAHELETAGYHLLGASADTIDQMEDRERFYQFLDSIEVEHIPGEEVTSPTQLQEAIQQ 692

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+++I  ++ +   L   +        L++QYV G EL    + 
Sbjct: 693 LGYPCILRPSYVIGGKGMLLIHSEEQLAEVLPNLAY-----PTLVDQYVAGRELEVDCVT 747

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           D       + + + +       +S  ++  + P +  L I ++V+ +A    +A+  +G 
Sbjct: 748 DGETVYVPVVLEQIEAAG---VHSGDSTMVLPPVETSLSIQEQVESIAKRIGRALDYKGA 804

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F+ +  +  ++ LEIN +   T     P ++   G     L+ W
Sbjct: 805 LNIQFVLEEDT--IYVLEINPRASRT----VPIVSKVTG---EPLIEW 843


>gi|85708071|ref|ZP_01039137.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           NAP1]
 gi|85689605|gb|EAQ29608.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter sp.
           NAP1]
          Length = 449

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 70/212 (33%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I+E  +I +            DK+++K+     G+P+ P     +   
Sbjct: 83  YGFLSENAKFAEIVEAHDIAWIGPKPEHIRTMGDKVQAKKTAGELGLPLVPGSDGAVSDP 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   G+ V + +  +   + Q+ S           Y++ 
Sbjct: 143 EEAKKIAAEIGYPVIIKAASGGGGRGMKVCESEDKLETLMKQAGSEAKAAFGDATVYIEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +                     L+          P   I  D    +  +   
Sbjct: 203 YLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVISDDERAAMGEVCSK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +G RG    +FL+   + + +++E+N +
Sbjct: 263 AMRDMGYRGAGTIEFLW--ENGEFYFIEMNTR 292


>gi|254446703|ref|ZP_05060178.1| urea carboxylase [Verrucomicrobiae bacterium DG1235]
 gi|198256128|gb|EDY80437.1| urea carboxylase [Verrucomicrobiae bacterium DG1235]
          Length = 1194

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 20/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +GI +   DQ +             +      +++       
Sbjct: 147 ASEIGYPIMLKSTGGGGGIGIRLCWNDQELHESFDSIKRLCEHNFGNSGVFIEKFVQRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         ++  +       PA     +   ++   A    QA+ 
Sbjct: 207 HIEAQIFGDGNGKVIALGERDCSVQRRNQKVIEETPAPALSSEQRADLLNTAVRLSQAVK 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            R     +F++D   +K ++LE+N +              +       G    +L+ WMV
Sbjct: 267 YRSAGTVEFVYDVDEKKFYFLEVNTR----------LQVEHCVTEEVTGV---DLVEWMV 313

Query: 294 EDASCL 299
           + A+  
Sbjct: 314 KQAAGD 319


>gi|241664205|ref|YP_002982565.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           pickettii 12D]
 gi|309783078|ref|ZP_07677797.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
 gi|240866232|gb|ACS63893.1| acetyl-CoA carboxylase, biotin carboxylase [Ralstonia pickettii
           12D]
 gi|308918186|gb|EFP63864.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ralstonia sp.
           5_7_47FAA]
          Length = 455

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPESIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEILATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              E Y++        +    L                ++          P   IP  + 
Sbjct: 194 GNPEVYMEKFLEHPRHVEIQVLADQHRNAVWLGERDCSMQRRHQKVIEEAPAPHIPRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 ERIGDRCAEACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|120437015|ref|YP_862701.1| pyruvate carboxylase [Gramella forsetii KT0803]
 gi|117579165|emb|CAL67634.1| pyruvate carboxylase [Gramella forsetii KT0803]
          Length = 1149

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ VI+ ++ +     +S             +++       
Sbjct: 150 ANRIGFPLMLKAASGGGGRGMRVIRDEEGLKKSFSESKREALNAFGDDTVFIEKFIENPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +  +   +         ++          P+     +I +++ + A    +A+ 
Sbjct: 210 HIEIQIVADSHGNMVHLFERDCSVQRRYQKVIEFAPSYGLSTEIKEKLYQYALDICKAVD 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 270 YNNIGTVEFLVDE-DGSIYFIEVNPR 294


>gi|91976682|ref|YP_569341.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
 gi|91683138|gb|ABE39440.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisB5]
          Length = 658

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/233 (15%), Positives = 80/233 (34%), Gaps = 10/233 (4%)

Query: 41  SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           ++  ++   K    D      +G   E+    A      + +      + A   +K  +K
Sbjct: 67  NIPALIEAAKIAGADAVHPG-YGFLAENEDFAAACRDAGLVFIGPSAESIASMGNKAGAK 125

Query: 98  QVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +++   GVP  P        +   +     I  P +IK + GG   G+ ++K   ++P  
Sbjct: 126 EIMIKAGVPCVPGYQGADQSDAAMIAEAGKIGFPVMIKAVAGGGGRGMRLVKDAAALPDA 185

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           L  + S            ++   +    +                     ++        
Sbjct: 186 LRSARSEAQSAFGDPTVILERAIVDPRHIEIQVFGDRYGHAIHLGERDCSVQRRHQKLIE 245

Query: 214 VLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P+    + + +++  +A  A +AIG  G    +FL D    + +++E+N +
Sbjct: 246 EAPSPAVSEALREQMGVVAVNAVKAIGYEGAGTLEFLLDAQ-GQFYFMEMNTR 297


>gi|259015999|gb|ACV89282.1| putative CAD trifunctional protein [Austroneurorthus brunneipennis]
          Length = 669

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P     
Sbjct: 81  SGSQAIKALKEEGIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEEVIRSERPSGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + +S     V    +
Sbjct: 141 TFGGQTALNCGVELDKANVFEKYGCKILGTPIQSIIQTEDRKIFAERISEIGEKVAPSVA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 201 VDCVDEALEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LAIQALAHSSQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G         D       I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLRGW-KEVEYEVDRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLCNKEYNMLRST 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 AINVIRHFGIVGECNIQYALNPHSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|218526162|gb|ACK86488.1| carbamoyl-phosphate synthase [Austroneurorthus brunneipennis]
          Length = 725

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P     
Sbjct: 129 SGSQAIKALKEEGIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEEVIRSERPSGVLL 188

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + +S     V    +
Sbjct: 189 TFGGQTALNCGVELDKANVFEKYGCKILGTPIQSIIQTEDRKIFAERISEIGEKVAPSVA 248

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 249 VDCVDEALEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LAIQALAHSSQLIIDK 306

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G         D       I V   +       ++  +        +    Y  ++  
Sbjct: 307 SLRGW-KEVEYEVDRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLCNKEYNMLRST 365

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 366 AINVIRHFGIVGECNIQYALNPHSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 421

Query: 291 WM 292
            +
Sbjct: 422 KL 423


>gi|157369662|ref|YP_001477651.1| Urea carboxylase [Serratia proteamaculans 568]
 gi|157321426|gb|ABV40523.1| Urea carboxylase [Serratia proteamaculans 568]
          Length = 1207

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 55/186 (29%), Gaps = 20/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+     + ++                    +++       
Sbjct: 147 ARQIGYPVMLKSTAGGGGIGLTRCDDETALREAYDSVKRLGEQFFRDSGAFIERFVDQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P    + + + A     ++ 
Sbjct: 207 HVEVQIFGDGQGWVVALGERDCSLQRRNQKVVEETPAPNLPTATRQTLHQAAVALGASVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            R     +F++D    + ++LE+N +              +       G    +L+  M+
Sbjct: 267 YRSAGTVEFIYDGARDEFYFLEVNTR----------LQVEHPVTESVTGL---DLIECML 313

Query: 294 EDASCL 299
           + A+  
Sbjct: 314 QVAAGD 319


>gi|306840347|ref|ZP_07473118.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO2]
 gi|306289694|gb|EFM60886.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO2]
          Length = 644

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 38  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 95

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D    
Sbjct: 96  SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDDEAR 155

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 156 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 215

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 216 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 269

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 270 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 297


>gi|260432886|ref|ZP_05786857.1| carbamoyl-phosphate synthase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416714|gb|EEX09973.1| carbamoyl-phosphate synthase, large subunit [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 1117

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 108/316 (34%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   +         D D S 
Sbjct: 588 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDYDTSD 640

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 641 RLYFEPLTFEHVMEILRTEQQNGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 700

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 701 LAEDRERFQALVNDLGLKQPKNGIASTDAQALEIAEKIGFPLVIRPSYVLGGRAMEIVRD 760

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 761 MDQLKRYINEAVVVSGDSPVLLDSYLAGAVELDVDALCDGKDVHVAGIMQHIEEAG---V 817

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I  E++   +   +A+   G+    F       +++ +E+N +
Sbjct: 818 HSGDSACSLPPYSLSKEIIAEIKDQTYKLAKALNVVGLMNVQFAI--KDGEIYLIEVNPR 875

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 876 ASRT----VPFVAKAT 887



 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/315 (12%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALEEMGVLEKFGVEMIGAKREAIEMAEDRKLFREAMDRLGLENPKATI 148

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                    D    I  P +I+P       G  V    +         
Sbjct: 149 VTAPKKADGSADLDAGVQMALDELENIGLPAIIRPAFTLGGTGGGVAYNREDYIHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +   S D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEYEMEVVRDSADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339


>gi|242047032|ref|XP_002461262.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
 gi|241924639|gb|EER97783.1| hypothetical protein SORBIDRAFT_02g043810 [Sorghum bicolor]
          Length = 603

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 42/214 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD------------------RSV 42
           + ++  G S ER VSL+S ++    ++     V    +D                     
Sbjct: 12  VGLICCGPSGERGVSLNSARSVLDHIQGEDLVVRCYYIDSAMKAFATSPVQLYSNTPSDF 71

Query: 43  GLVLAHL----------------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
              L  L                  D+ F V+HG FGEDG +Q +LE   +P+  +    
Sbjct: 72  DFKLESLAQGFDSLSDFAEHLATNVDIVFPVIHGKFGEDGGIQELLEKANVPFVGTPSKE 131

Query: 87  SALSMDKMRS------KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
              + DK         +    +  +      ++          +      KP + GSS+G
Sbjct: 132 CQRAFDKKDKLAKPELEAWFKTVNLNKENGKVIGWIGEGVTSDVLEQV--KPTRAGSSIG 189

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++V            +  S    D+++IE +++G
Sbjct: 190 MVVAYGVNDAAQKAEEIISEGIDDKVIIEVFLEG 223


>gi|148711613|gb|ABR02233.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQSLKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R +  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNSETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|323450741|gb|EGB06621.1| hypothetical protein AURANDRAFT_65524 [Aureococcus anophagefferens]
          Length = 2153

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/185 (18%), Positives = 67/185 (36%), Gaps = 13/185 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              +  P ++K  +GG   GI + K    +  +     +   G  + I Q + G   L  
Sbjct: 235 AERVGYPVMLKASEGGGGKGIRMNKDATELAANFPSVEAEVPGSPIFIMQLMTGARHLEV 294

Query: 180 GVMGDASLDVTE-IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            V+GD   +         S    ++  +     T         DI+ +++  A    Q I
Sbjct: 295 QVVGDEHGNAVALNGRDCSTQRRFQKIFEEGPPTKPSGGIAQPDIFADMELKAKKLVQNI 354

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPEMAA-YAGYSFREL- 288
           G  G    ++L+D  + + F+LE+N       P   G+T V++         G     + 
Sbjct: 355 GYVGAGTVEYLYDAKTDEYFFLELNPRLQVEHPVTEGVTGVNLPATQLQVAMGIPLPNMP 414

Query: 289 -LLWM 292
            +  +
Sbjct: 415 EIRRL 419


>gi|257865971|ref|ZP_05645624.1| pyruvate carboxylase [Enterococcus casseliflavus EC30]
 gi|257872304|ref|ZP_05651957.1| pyruvate carboxylase [Enterococcus casseliflavus EC10]
 gi|257875598|ref|ZP_05655251.1| pyruvate carboxylase [Enterococcus casseliflavus EC20]
 gi|257799905|gb|EEV28957.1| pyruvate carboxylase [Enterococcus casseliflavus EC30]
 gi|257806468|gb|EEV35290.1| pyruvate carboxylase [Enterococcus casseliflavus EC10]
 gi|257809764|gb|EEV38584.1| pyruvate carboxylase [Enterococcus casseliflavus EC20]
          Length = 1142

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             +    P +IK   GG   G+ V   ++       ++ S         E YV+      
Sbjct: 147 FANEHDYPIMIKAALGGGGRGMRVAHDEKEARDGYERAKSEAKAAFGSDEVYVEKYISNP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +    L  T   V         ++        V P   +  +  +++ + A    + +
Sbjct: 207 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPCVSMTDEQREKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL      K +++E+N +
Sbjct: 267 GYINAGTVEFLV--EGDKFYFIEVNPR 291


>gi|224066915|ref|XP_002302277.1| predicted protein [Populus trichocarpa]
 gi|222844003|gb|EEE81550.1| predicted protein [Populus trichocarpa]
          Length = 2276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 55/174 (31%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             +S  V     +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 199 SPQSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 258

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 259 LFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDHYGNVAALHSRDCSIQRRHQKIIEEGP 318

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P      + +     A    + +   G +  ++L+   + + ++LE+N +
Sbjct: 319 ITVAPVDTVKKLEQ----AARRLAKCVNYVGAATVEYLYSMETGEYYFLELNPR 368


>gi|188996524|ref|YP_001930775.1| MGS domain protein [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931591|gb|ACD66221.1| MGS domain protein [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 530

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/289 (13%), Positives = 93/289 (32%), Gaps = 31/289 (10%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  +L + G+K   +         D D              V  ++   KP        G
Sbjct: 28  CVWSLREEGYKAIMVNCNPETVSTDYDTSDKLFFEPIVLEDVLNIIEKEKPLGVVVQFGG 87

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T    +  A   ++ R   +      P           +  
Sbjct: 88  QTPLKLAKPLEKLNIPILGTSPESIDIAEDRERFRDLIIKLGIKQPESAIAKSKDEAVKV 147

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + ++   + +   + ++        +LI++++DG   +  
Sbjct: 148 AQEIGFPVLVRPSYVLGGRAMRLVYDMEELLKYIEEAVMVTEDRPILIDKFLDG---SIE 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  D   D  ++ V     +  E    S +S   +P    P ++  +++  + +  +A+ 
Sbjct: 205 VDVDCVCDGEDVLVGAVMEHIEEAGIHSGDSATCIPHYTLPDEVVIKIKEQSRMLAKALN 264

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             G+    +       +++ +E N +   T     P ++   GY   ++
Sbjct: 265 TIGLINIQYAI--KDNEIYIIEANPRASRT----VPFVSKAIGYPLAKI 307


>gi|86450091|gb|ABC96234.1| carbamoylphosphate synthetase [Campsicnemus curvipes]
          Length = 1276

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSTGLADKVYFLPLTPDYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELERSGIFSKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG      ++ +    L   ++ + +QL+I++
Sbjct: 488 VYSIKEAVEAATKLGYPVMARAAFSLGGLGSGFANNEKELQE--LAQQAFAYSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|187930100|ref|YP_001900587.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           pickettii 12J]
 gi|187726990|gb|ACD28155.1| acetyl-CoA carboxylase, biotin carboxylase [Ralstonia pickettii
           12J]
          Length = 455

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPESIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEILATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              E Y++        +    L                ++          P   IP  + 
Sbjct: 194 GNPEVYMEKFLEHPRHVEIQILADQHRNAVWLGERDCSMQRRHQKVIEEAPAPHIPRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 ERIGDRCAEACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|83313341|ref|YP_423605.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
 gi|82948182|dbj|BAE53046.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Magnetospirillum
           magneticum AMB-1]
          Length = 663

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 53/187 (28%), Gaps = 20/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +   D         +++           +V+       
Sbjct: 148 AREIGYPVMLKASAGGGGKGMRLAWNDAEAHEGFTSATNEAKTSFGDDRVFVEKFIEQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          P+     +  K +   A    + + 
Sbjct: 208 HIEIQVLADGQGTTLYLGERECSIQRRHQKVIEEAPSPFLTPETRKAMGEQACALARIVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+    + + ++LE+N +              +       G    +L+  M+
Sbjct: 268 YKSAGTVEFIVGGATGEFYFLEMNTR----------LQVEHPVTEMITGL---DLVEQMI 314

Query: 294 EDASCLR 300
             AS  +
Sbjct: 315 RVASGEK 321


>gi|67526095|ref|XP_661109.1| hypothetical protein AN3505.2 [Aspergillus nidulans FGSC A4]
 gi|40739876|gb|EAA59066.1| hypothetical protein AN3505.2 [Aspergillus nidulans FGSC A4]
 gi|259481983|tpe|CBF76018.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 380

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 94/315 (29%), Gaps = 38/315 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDL---AFNVLH-GN---FGEDGLVQA 70
           SG      L+  G +V + D    V        PD     ++ +H G    +    L  +
Sbjct: 55  SGADIVYTLQQKGIQVIKADPSAPVSSNEGWTFPDTEEGIYSAVHQGATHLWANTILFSS 114

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQV------------VSSCGVPVCPSILVNRFTM 118
                    T        +       +              +    +P            
Sbjct: 115 HPLQTSARLTPLADKIYVVGQPPGLVENFDDKAYLNGKLAQIGGFTLPKSWLATSENIQQ 174

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
             Q +   P V KP++G  S G+ V +  Q +       +       +++E+++ G E T
Sbjct: 175 LVQQVDRYPIVGKPVRGRGSHGVKVCRDKQQLLQ--HTKTLLAESPLVMLEEFLAGEEAT 232

Query: 179 CGVM-------GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRL 230
             VM          S               Y    +   ++ V+  +   D  Y ++ R 
Sbjct: 233 ITVMPPTPSDPHHWSTVPVNRFNHDDGIAPYNGVVAVTANSRVVTEEELKDPAYGKIMRQ 292

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYA 281
                Q IG     R D             +IN++P MT           S+    A+  
Sbjct: 293 CEKVAQLIGATAPIRVDVRRFSPGSDFALFDINMKPNMTGPGRPGREDQASLTAIAASAM 352

Query: 282 GYSFRELLLWMVEDA 296
           G+ +  LL  ++E A
Sbjct: 353 GWDYGTLLENILEGA 367


>gi|306844088|ref|ZP_07476682.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO1]
 gi|306275531|gb|EFM57263.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. BO1]
          Length = 667

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D    
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDDEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|156329541|ref|XP_001619046.1| hypothetical protein NEMVEDRAFT_v1g152547 [Nematostella vectensis]
 gi|156201402|gb|EDO26946.1| predicted protein [Nematostella vectensis]
          Length = 254

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 71/228 (31%), Gaps = 7/228 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +    + D      +G   E            + +         +  DK+ ++++ 
Sbjct: 14  EIIRIAKERECDAIHPG-YGFLSERADFAHACTKSGVIFIGPSPQVVHMMGDKLEARKMA 72

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       T +           P + K   GG   G+ VI K + +      
Sbjct: 73  INSGVPVVPGTENPIRTAEEAKQFCEEHGLPVITKAAYGGGGRGMRVIWKMEDLEEFFNL 132

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +S+  +        +++        +    +      V         ++        + P
Sbjct: 133 ASNEAYAAFGDGSMFIEKFIEKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVIEIAP 192

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A    D I + +   A    +A+G       +FL D      +++E+N
Sbjct: 193 APHLDDAIRQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 239


>gi|15895458|ref|NP_348807.1| carbamoyl phosphate synthase-like protein [Clostridium
           acetobutylicum ATCC 824]
 gi|15025185|gb|AAK80147.1|AE007719_4 Carbamoylphosphate synthase large subunit, short form [Clostridium
           acetobutylicum ATCC 824]
 gi|325509604|gb|ADZ21240.1| putative carbamoyl phosphate synthase large subunit [Clostridium
           acetobutylicum EA 2018]
          Length = 315

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/253 (14%), Positives = 83/253 (32%), Gaps = 18/253 (7%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +  +   D    +    F +    +  L+ +      SG     +  DK +S + 
Sbjct: 55  EDIIRICRNENIDFLIPLFEREFLDLCSYRQELKKVGTELLLSGKTIIEICNDKWKSYEF 114

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                V    +        +   +I  P ++KP  G  S  +  +   + +   L     
Sbjct: 115 FKENQVKCPITY----LRDEIPSVIEYPLIVKPFDGMGSSSVFKVNNKRQLEFFL----- 165

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             + +  +++Q+++G E T   + D   +V      +           S    +    + 
Sbjct: 166 -EYVENPVVQQFIEGKEYTIDTLCDLKGNVIFAIPRERLEVRSGEVSKSRTVKNEKIIEA 224

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             D+  ++Q  A    + +   G      + D L  +++++EIN + G       P    
Sbjct: 225 VKDLCSKLQNTASRNGENL--IGPLTIQCIVDNL-GEIYFIEINPRFG----GGVPLSFK 277

Query: 280 YAGYSFRELLLWM 292
             G  +   L  +
Sbjct: 278 AGG-DYGRYLKDI 289


>gi|93355848|gb|ABF09937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cupriavidus
           metallidurans CH34]
          Length = 477

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 36  ALRIQRACRELGIKTVVVYSEADKDAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 95

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 96  DAQAIHPGYGFLSENADFAERVEKSGFVFIGPTSENIRLMGDKVSAKQAMIKSGVPCVPG 155

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 156 SDGALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAF 215

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   ++ D       +            K         +P +  
Sbjct: 216 GNPEVYMEKFLENPRHVEIQILADQHRQAIWLGERDCSMQRRHQKVIEEAPAPHIPRR-- 273

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 274 --LIERIGDRCAEACKKIGYRGAGTFEFLY--ENNEFYFIEMNTR 314


>gi|330985043|gb|EGH83146.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. lachrymans str. M301315]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/284 (15%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPDFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|325114454|emb|CBZ50010.1| hypothetical protein NCLIV_004860 [Neospora caninum Liverpool]
          Length = 2559

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 51/151 (33%), Gaps = 4/151 (2%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDG 174
                   I  P +IK  +GG   GI ++ + + +     Q  +   G    +++     
Sbjct: 446 DCEKVAARIGYPIMIKASEGGGGKGIRMVDRKEQLRGAYEQVVAEVPGSPVFMMQLCTAA 505

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   ++GD       ++           K         +     +   +     A   
Sbjct: 506 RHIEVQILGDEDGQAVALSGRDCSTQRRFQKIFEEAPPTTVVPPHTMKEMERA---AQRL 562

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            Q++G  G    ++L++    K F+LE+N +
Sbjct: 563 TQSLGYVGAGTVEYLYNRKDNKFFFLELNPR 593


>gi|213584233|ref|ZP_03366059.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
          Length = 422

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 46  ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 105

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 106 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 165

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 166 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 222

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 223 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 282

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 283 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 325


>gi|213427508|ref|ZP_03360258.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
          Length = 826

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 339 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 398

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 399 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 458

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 459 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 515

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 516 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 575

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 576 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 618



 Score = 37.5 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 222 DIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------I 273
             Y+ ++  +    + IG   G S   F  +P + ++  +E+N  P ++  S        
Sbjct: 10  KEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATG 67

Query: 274 FPE---MAA-YAGYSFRELLLWM 292
           FP     A    GY+  EL+  +
Sbjct: 68  FPIAKVAAKLAVGYTLDELMNDI 90


>gi|213416821|ref|ZP_03349965.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 690

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 203 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 262

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 263 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 322

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 323 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 379

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 380 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 439

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 440 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 482


>gi|213029073|ref|ZP_03343520.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. 404ty]
          Length = 413

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 63  ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 122

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 123 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEQAVEKAKE 182

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 183 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDRFLDD---AVEVDV 239

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 240 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 299

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 300 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 342


>gi|255954463|ref|XP_002567984.1| Pc21g09450 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589695|emb|CAP95842.1| Pc21g09450 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 800

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 48/144 (33%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++++   +  +L ++ S         +  ++    +  
Sbjct: 187 AQEIGFPVMLKASAGGGGKGMRIVREAGELKQELARAQSEAQRSFGSSDCILEKYIESSK 246

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P      +  + +   A    + IG
Sbjct: 247 HVEIQILGDSHGEVISFFDRDCSVQRRHQKVIEETPCTFLTDETRQNMSNTAVRIAKLIG 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
                  +F+ D  +   ++LE+N
Sbjct: 307 YENAGTVEFIVDIKTNHFYFLEVN 330


>gi|150017607|ref|YP_001309861.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           beijerinckii NCIMB 8052]
 gi|149904072|gb|ABR34905.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           beijerinckii NCIMB 8052]
          Length = 447

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 71/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++  V  H K D      +G   E+     + E   I +        +L  DK  ++  +
Sbjct: 65  NILSVAIHAKVDAIHPG-YGFLSENTNFAQMCEEFGIKFIGPCPEIISLMGDKSNARDTM 123

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVP  P     I      +     I  P ++K   GG   G+ V+  +  +   +  
Sbjct: 124 KRAGVPTVPGTDGEIQNINEAIAIAKEIGYPVIVKASAGGGGKGMRVVNSEDELISSIET 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +             Y++        +    +      V         ++          P
Sbjct: 184 AQKEAQNYFGNPMVYLEKYLEYTRHVEIQIIGDNYGNVVHLGERDCSIQRRHQKLVEESP 243

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +    + +   +   A    +AI    +   +FL +      +++E+N +
Sbjct: 244 SPALNEDLRNAMGEAAVRVAKAIKYNSVGTVEFLLNE-DNNFYFMEMNTR 292


>gi|67906489|gb|AAY82596.1| predicted acetyl-CoA carboxylase [uncultured bacterium
           MedeBAC35C06]
          Length = 449

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 60/213 (28%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   ED       E     +            DK+ +K +  S G+   P         
Sbjct: 82  YGFLAEDADFAEKCEKSGFKFIGPSAEIIRQMGDKITAKYLAESAGIQTVPGYKEDIPED 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ ++K +  +      +           + Y++
Sbjct: 142 EDSFKKIAADIGYPIMIKATAGGGGRGMRIVKSENELISSAQITMQEAKNAFGNEKIYLE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAF 232
                   +    +   +            ++          PA    +   +       
Sbjct: 202 KFIENPRHVEVQVVGDGKGNAIHLGTRDCSMQRRHQKIIEEAPALNLDEDSLKETLDACI 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + I   G    +FL+   + + +++E+N +
Sbjct: 262 NLCKKIKYEGAGTLEFLY--ENNEFYFIEMNTR 292


>gi|33599600|ref|NP_887160.1| pyruvate carboxylase [Bordetella bronchiseptica RB50]
 gi|33567196|emb|CAE31110.1| putative pyruvate carboxylase [Bordetella bronchiseptica RB50]
          Length = 1167

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/155 (12%), Positives = 49/155 (31%), Gaps = 1/155 (0%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
             +   +     +  P ++K   GG   G+  I  +  +   +  +           E Y
Sbjct: 143 HDDAACLRLAREVGYPLMLKASWGGGGRGMRAIHDEAELLPAIASARREAGAAFGNDEVY 202

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRL 230
           ++ +      +    L      +         ++  +       PA    D  ++   + 
Sbjct: 203 LEKLVQRAHHVEVQVLGDQHGNLVHVFERDCSVQRRNQKVIERAPAPYLGDAGRQALFQA 262

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A    + +G       +FL D  +   +++E+N +
Sbjct: 263 ALTLTRGVGYTHAGTVEFLMDADTGNFYFIEVNPR 297


>gi|229493673|ref|ZP_04387458.1| carbamoyl-phosphate synthase, large subunit [Rhodococcus
           erythropolis SK121]
 gi|229319634|gb|EEN85470.1| carbamoyl-phosphate synthase, large subunit [Rhodococcus
           erythropolis SK121]
          Length = 1118

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 93/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L++ G +VS ++ +                       +  V+A       K 
Sbjct: 29  SGTQACRVLQEEGLRVSLVNSNPATIMTDPEFADATYVEPITAEFLEKVIAKEALQGNKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q ILE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAVALHEQGILEKYDVELIGADFDAIQRGEDRQKFKDIVAKVGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +             +  P V++P      LG  +      +        + +    
Sbjct: 149 AKSAVCYTMDEVHATVAELGYPVVVRPSFTMGGLGSGMAYDVDDLNRIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   S D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDSRDNVVIVCSIENVDPVGVHTGDSVTVAPAMTLTDREYQA 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP--- 275
                  +  +     G     F  DP   ++  +E+N  P ++  S        +P   
Sbjct: 269 MRDLSIDILREVGVDTGGCNIQFAMDPKDGRLVVIEMN--PRVSRSSALASKATGYPIAK 326

Query: 276 EMAA-YAGYSFRELLLWM 292
             A    GY+  E++  +
Sbjct: 327 MAAKLAIGYTLDEIVNDI 344


>gi|226306491|ref|YP_002766451.1| carbamoyl-phosphate synthase large chain [Rhodococcus erythropolis
           PR4]
 gi|226185608|dbj|BAH33712.1| carbamoyl-phosphate synthase large chain [Rhodococcus erythropolis
           PR4]
          Length = 1118

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 93/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L++ G +VS ++ +                       +  V+A       K 
Sbjct: 29  SGTQACRVLQEEGLRVSLVNSNPATIMTDPEFADATYVEPITAEFLEKVIAKEALQGNKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q ILE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAVALHEQGILEKYDVELIGADFDAIQRGEDRQKFKDIVAKVGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +             +  P V++P      LG  +      +        + +    
Sbjct: 149 AKSAVCYTMDEVHATVAELGYPVVVRPSFTMGGLGSGMAYDVDDLNRIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   S D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDSRDNVVIVCSIENVDPVGVHTGDSVTVAPAMTLTDREYQA 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP--- 275
                  +  +     G     F  DP   ++  +E+N  P ++  S        +P   
Sbjct: 269 MRDLSIDILREVGVDTGGCNIQFAMDPKDGRLVVIEMN--PRVSRSSALASKATGYPIAK 326

Query: 276 EMAA-YAGYSFRELLLWM 292
             A    GY+  E++  +
Sbjct: 327 MAAKLAIGYTLDEIVNDI 344


>gi|225556846|gb|EEH05133.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus G186AR]
          Length = 2496

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKEEFEKLGIRVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 663 TLEEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRE--LCMKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|124005905|ref|ZP_01690743.1| acetyl-CoA carboxylase, biotin carboxylase [Microscilla marina ATCC
           23134]
 gi|123988588|gb|EAY28229.1| acetyl-CoA carboxylase, biotin carboxylase [Microscilla marina ATCC
           23134]
          Length = 447

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +IK D+        +++           Y++   +   
Sbjct: 148 AVEIGYPVIIKATAGGGGRGMRIIKSDEEFENAWNSATAEAEAAFGNAGMYMEKFVVEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     ++          P   +  ++ +E+   A  A +AIG
Sbjct: 208 HVEIQIAGDQSGKACHLSERDCSIQRRHQKLVEETPSPIMTPELREEMGMAAVRAAEAIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   +FL D    K +++E+N +
Sbjct: 268 YEGVGTVEFLVDKY-NKFYFMEMNTR 292


>gi|15613695|ref|NP_241998.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
 gi|42558882|sp|Q9KDS9|ACCC_BACHD RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|10173748|dbj|BAB04851.1| biotin carboxylase [Bacillus halodurans C-125]
          Length = 452

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/148 (12%), Positives = 50/148 (33%), Gaps = 2/148 (1%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                   P ++K   GG  +G+ +++ D+ +      +             +++     
Sbjct: 146 HLARKFGYPVMLKASAGGGGIGMQLVRNDEEMRKAFAGNQKRATSFFGDGTMFLEKAVEN 205

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQA 237
              +           V         ++          P+    + + +++ +LA  A +A
Sbjct: 206 PRHIEVQIAADHHGHVVHLWERDCSIQRRHQKVVEEAPSPFVDEALREKIGQLAVKAAKA 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I  R +   + L D     +++LE+N +
Sbjct: 266 IDYRNLGTVECLVDGEKN-IYFLEMNTR 292


>gi|90426002|ref|YP_534372.1| allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB18]
 gi|90108016|gb|ABD90053.1| Allophanate hydrolase subunit 2 [Rhodopseudomonas palustris BisB18]
          Length = 1183

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 58/188 (30%), Gaps = 18/188 (9%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M     I  P ++K   GG  +G+ +     ++                    Y++    
Sbjct: 144 MREAERIGFPLMLKSTAGGGGIGMQLCHDADTLRERFATVQRTAKASFGDARVYLERFVA 203

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +        +  V         L+  +       PA     ++   + R A    +
Sbjct: 204 EARHIEVQIFGDGQGKVIALGERDCSLQRRNQKVIEETPAPGLSDELRTRLHRAAVALGE 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           ++  +     +F++D      ++LE+N       P +T         A  G    +L+ W
Sbjct: 264 SVAYQSAGTVEFIYDVAREDFYFLEVNTRLQVEHP-VTE--------AVFGV---DLVEW 311

Query: 292 MVEDASCL 299
           MV  A+  
Sbjct: 312 MVRQAAGD 319


>gi|322494062|emb|CBZ29358.1| putative acetyl-CoA carboxylase [Leishmania mexicana
           MHOM/GT/2001/U1103]
          Length = 2167

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/157 (13%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P +IK  +GG   GI   K  + +       S       + + 
Sbjct: 197 YVNSPEECEEVCRRIGFPVMIKASEGGGGKGIRSCKCLKDVKSSFFAVSEEVKDCHIFVM 256

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + ++    L   ++ D   +   +            +            ++   I   ++
Sbjct: 257 RMLENVRHLEVQLLADGYGNCIAVRTRDCSVQ----RRHQKIIEEGPAFEVDPAIITAME 312

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    +A+   G+   ++++D  + K ++LE+N +
Sbjct: 313 SAAIQLARAVKYCGLGTVEYMYDKETHKFYFLELNPR 349


>gi|310798333|gb|EFQ33226.1| carbamoyl-phosphate synthase [Glomerella graminicola M1.001]
          Length = 2233

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 469 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIQYERPDAIYV 528

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E  E+     G     +   + R     S   +        S  
Sbjct: 529 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAC 588

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 589 NVDEAMSCVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQVLIERSM 646

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 647 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 705

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 706 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 755


>gi|149198157|ref|ZP_01875204.1| pyruvate carboxylase [Lentisphaera araneosa HTCC2155]
 gi|149138759|gb|EDM27165.1| pyruvate carboxylase [Lentisphaera araneosa HTCC2155]
          Length = 1151

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 56/150 (37%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P ++K   GG   G+ V+     +   L ++       +   +  + +  V   
Sbjct: 153 ADDLGFPVIVKAAHGGGGRGMRVVNSAHELQQKLEEAQRESLTAFGSDECFIEKFIVKAK 212

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   ++  +            K   +  +  LP K+  DI +     A    
Sbjct: 213 HIEVQILGDLHGNLVHLYDRDCSLQRRHQKIIEVAPSVGLPEKLREDICQ----SAVSIC 268

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +     +FL D  + K F++EIN +
Sbjct: 269 KSVDYQNAGTVEFLLDTETNKFFFIEINPR 298


>gi|94310758|ref|YP_583968.1| phosphoribosylglycinamide formyltransferase 2 [Cupriavidus
           metallidurans CH34]
 gi|122987937|sp|Q1LMC7|PURT_RALME RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|93354610|gb|ABF08699.1| phosphoribosylglycinamide formyltransferase 2 [Cupriavidus
           metallidurans CH34]
          Length = 400

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/281 (10%), Positives = 76/281 (27%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                        +  ++   +PDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDGEQLKALIEAERPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          ++  IP   +  L       +  + + +     P      +    
Sbjct: 84  EAIATPMLEALEAAGVVRVIPTARAARLTMDREGIRRLAAETLGLPTSPYKFCDSLEELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P V+KP+   S  G   I     +      + +        +I +     +
Sbjct: 144 AAIDGGIGYPCVVKPVMSSSGKGQSKIDGPADVKAAWDYAMAGGRVSHGRVIVEGFIDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   ++                ++ +        P  +     +  Q +A     
Sbjct: 204 YEITLLTVRAVGANGEVETHFCEPIGHVQVAGDYVESWQPHPMHPKALETSQHIARAVTA 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G +G+   +        +V++ E++ +P      +   +
Sbjct: 264 DLGGQGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMI 300


>gi|320093611|ref|ZP_08025498.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319979434|gb|EFW10909.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 1099

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVVLVNSNPATIMTDPGIADATYVEPITPEVVASIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            L G    +  V    + +LE   +    + I A     D+   K +V   G  V  S  
Sbjct: 89  TLGGQTALNTAVALAEEGVLERYGVELIGASIDAIRAGEDREAFKAIVERSGAEVARSFI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P      LG    +  + +     Q  + +   ++L+E+
Sbjct: 149 AHTMEECHAAAEQLGYPLVVRPSFTMGGLGSGFARTPEDLERIAGQGLAASITTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++ +     
Sbjct: 209 SILGWKEYELELMRDKADNVVVVCSIENVDPVGVHTGDSVTVAPALTLTDRELQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIREVGVDTGGCNIQFAVHPGTGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|189463700|ref|ZP_03012485.1| hypothetical protein BACINT_00031 [Bacteroides intestinalis DSM
           17393]
 gi|189438650|gb|EDV07635.1| hypothetical protein BACINT_00031 [Bacteroides intestinalis DSM
           17393]
          Length = 1072

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     IL    +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTSGILNKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  + +  +      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAAERIGFPVMVRSAYALGGLGSGICQDKEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|154489782|ref|ZP_02030043.1| hypothetical protein PARMER_00010 [Parabacteroides merdae ATCC
           43184]
 gi|154089507|gb|EDN88551.1| hypothetical protein PARMER_00010 [Parabacteroides merdae ATCC
           43184]
          Length = 513

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 80/251 (31%), Gaps = 22/251 (8%)

Query: 32  KVSQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L            K D      +G   E+       +   I +   
Sbjct: 55  EAVLIGPAASKDSYLNIEKIIRAAKQHKVDAIHPG-YGFLSENADFARRCKEEGIVFIGP 113

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSS 138
                    DK+ +++ +   GVPV P        +     +      P ++K   GG  
Sbjct: 114 SAETMEAMGDKISARKRMIDAGVPVVPGTQQPLQDVGEACRVCREIGFPVMLKASMGGGG 173

Query: 139 LGIIVIKKDQSIPLDLLQSSSW----NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
            G+ +I K++ +      + S        D + +E+YV+G       +   +        
Sbjct: 174 KGMRLIHKEEEVEEAYNAARSESLSSFGDDTVYLEKYVEGPHHIEFQILGDNYGNVVHLC 233

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
            +        +     S       I  ++ KE+   A  A +A+   G    +FL D   
Sbjct: 234 ERECSVQRRNQKIVEESPSPF---ITPELRKEMGEKAVAAAKAVDYSGAGTIEFLVDKHR 290

Query: 255 RKVFWLEINVQ 265
              ++LE+N +
Sbjct: 291 N-FYFLEMNTR 300


>gi|152996993|ref|YP_001341828.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas sp. MWYL1]
 gi|150837917|gb|ABR71893.1| acetyl-CoA carboxylase, biotin carboxylase [Marinomonas sp. MWYL1]
          Length = 446

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKPDLAFN------------------- 56
                 A ++ G K   +   +DR +  V LA     +  N                   
Sbjct: 14  ALRILRACKELGIKTVAVHSKIDRDLLHVRLADESICIGPNPSTQSYLNIPAIISAAELT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  DTSAIHPGYGFLAENADFAEQVERSGFTFIGPKAETIRLMGDKVSAIKAMKEAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       +   + I  P ++K   GG   G+ V+  + S+   +  + S      
Sbjct: 134 SNGPVPSDPEECIRIANEIGFPIIVKAAAGGGGRGMRVVHNEGSLLKSISITQSEAGSYF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            L+          PA +  +  +
Sbjct: 194 GDSTVYMEKFLQNPRHVEVQVLADGQGNAVHLYDRDCSLQRRHQKVLEEAPAPMLNEESR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +    A   A   I  RG    +FL+       +++E+N +
Sbjct: 254 QACLKACVDACIKINYRGAGTFEFLY--EDGNFYFIEMNTR 292


>gi|327439742|dbj|BAK16107.1| biotin carboxylase [Solibacillus silvestris StLB046]
          Length = 454

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI V + ++ +   +  +             Y++      
Sbjct: 145 WAAKIGYPVIIKATAGGGGKGIRVARTEEELVKGIEITQKEAAAAFGNPGVYLEKFIEYF 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAI 238
                  L  +   V         ++          P+    +  +      A  A +A 
Sbjct: 205 RHCEIQVLADSHGNVVHLGERDCTVQRRMQKLVEEAPSPALSEERRAEMGEAAVKAAKAC 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F++D    + +++E+N +
Sbjct: 265 NYEGAGTIEFIYDYQEDRFYFMEMNTR 291


>gi|297566436|ref|YP_003685408.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus silvanus
           DSM 9946]
 gi|296850885|gb|ADH63900.1| acetyl-CoA carboxylase, biotin carboxylase [Meiothermus silvanus
           DSM 9946]
          Length = 446

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 48/145 (33%), Gaps = 2/145 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++  +  +   + Q+             Y++   +   
Sbjct: 147 AAEIGYPVILKATAGGGGRGMRLVSDESELERAVQQAQEEARAAFGNPTVYLE-KYIQEP 205

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +  +      V         ++          P+ +P ++ + +   A    + IG 
Sbjct: 206 KHIEIQVLGDGENVIHLWERDCSIQRRHQKLLEEAPSILPFEVRQSIAEAAVRLAKHIGY 265

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 +FL D      +++E+N +
Sbjct: 266 VSAGTLEFLVDREGN-FYFMEMNTR 289


>gi|221133447|ref|ZP_03559752.1| phosphoribosylglycinamide formyltransferase 2 [Glaciecola sp.
           HTCC2999]
          Length = 394

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 83/296 (28%), Gaps = 50/296 (16%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK  A   +  G +V  +D           DRS          
Sbjct: 16  VLLCG--SGE----L--GKEVAIEAQRLGCEVIALDRYDNAPAMQVADRSYTVSMLDGPA 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   KPD     +     +  L         +P  ++  L       +    + + 
Sbjct: 68  LKAIIEAEKPDYIVPEIEAIATDMLLELERNGFNVVPSANAAHLTMNREGIRSLVAETLG 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                           + +   I  P ++KP+   S  G  ++K    I           
Sbjct: 128 LPT-SRYAFADDKAAFVAAVESIGLPCIVKPIMSSSGKGQSMLKTADDIDTAW------- 179

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL------NSTHVL 215
              +        G                 +   ++   +Y  +                
Sbjct: 180 ---EYAQAGGRAGKGKVIVEGVVDFDYEITLLTIQAIDGTYFCEPIGHRQEDGDYRESWQ 236

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           P  +  +     + +A    QA+G RG+   +        +V++ E++ +P   GM
Sbjct: 237 PQMMSSEALNTAKAIATQVTQALGGRGLFGVELFI--KGDEVYFSEVSPRPHDTGM 290


>gi|58264816|ref|XP_569564.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Cryptococcus neoformans
           var. neoformans JEC21]
 gi|57225796|gb|AAW42257.1| methylcrotonoyl-Coenzyme A carboxylase 1, putative [Cryptococcus
           neoformans var. neoformans JEC21]
          Length = 733

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 126 PPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
            P +IKP  GG   G+ +++        +     ++      D++L+E++++    +   
Sbjct: 220 YPLIIKPTHGGGGKGMRIVRDPLTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQ 279

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD   +   +            +             +   + ++    A  A +AI  
Sbjct: 280 VFGDQFGNCVALWERDCSVQ----RRHQKIIEEAPAPGLSPALKRDFAEKAVAAAKAINY 335

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
            G    +F+ D  + + F++E+N +              +       G    +L+ W + 
Sbjct: 336 VGAGTVEFIMDAETGEHFFMEMNTR----------LQVEHPVTEMITGM---DLIEWQLS 382

Query: 295 DASCL 299
            A+  
Sbjct: 383 IAAGN 387


>gi|56695911|ref|YP_166262.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria
           pomeroyi DSS-3]
 gi|56677648|gb|AAV94314.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria pomeroyi
           DSS-3]
          Length = 449

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   I +         +  DK+ +K      G+PV P    
Sbjct: 77  AIHPGYGFLSENAGFVQIVEDHGITFIGPSAEHIRIMGDKITAKDTAKELGIPVVPGSDG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               +         I  P +IK   GG   G+ V +  + +      + S     + + +
Sbjct: 137 GVADVAEARRVGEHIGYPVIIKATAGGGGRGMKVARNAKEMEHAFSTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD   +   +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 253 ARIGKICADAVARINYIGAGTVEFLY--ENGEFYFIEMNTR 291


>gi|188038082|gb|ACD46674.1| cytosolic acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2260

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 180 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 239

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 240 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 299

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 300 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 348


>gi|188038076|gb|ACD46670.1| cytosolic acetyl-CoA carboxylase [Triticum urartu]
          Length = 2260

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 180 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 239

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 240 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 299

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 300 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 348


>gi|188038072|gb|ACD46667.1| cytosolic acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2258

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 177 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 236

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 237 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 296

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 297 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 345


>gi|188038068|gb|ACD46664.1| cytosolic acetyl-CoA carboxylase [Aegilops tauschii]
          Length = 2258

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 177 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 236

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 237 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 296

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 297 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 345


>gi|159045026|ref|YP_001533820.1| pyruvate carboxylase [Dinoroseobacter shibae DFL 12]
 gi|157912786|gb|ABV94219.1| pyruvate carboxylase [Dinoroseobacter shibae DFL 12]
          Length = 1145

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I     +   + +            E Y++ +     
Sbjct: 151 AEAIGFPLMLKASWGGGGRGMRPIFDPDEVADKVREGRREAEAAFGNGEGYLEKMITRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   +         ++  +       PA        +++  L       + 
Sbjct: 211 HVEVQILGDSMGNIYHLWERDCSVQRRNQKVVERAPAPYLSSSQREQLCELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + + F++E+N +
Sbjct: 271 YECAGTVEFLMDMDTGEFFFIEVNPR 296


>gi|157873559|ref|XP_001685287.1| acetyl-CoA carboxylase [Leishmania major strain Friedlin]
 gi|68128358|emb|CAJ08551.1| putative acetyl-CoA carboxylase [Leishmania major strain Friedlin]
          Length = 2168

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/157 (14%), Positives = 51/157 (32%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P +IK  +GG   GI   K  + +       S    G  + + 
Sbjct: 197 YVNSPEECEEVCRRIGFPVMIKASEGGGGKGIRSCKCLKDVKNLFFAVSEEVKGCHIFVM 256

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + ++    L   ++ D       +            +             +   I   ++
Sbjct: 257 RMLENVRHLEVQLLADCYGHCIAVRTRDCSVQ----RRHQKIIEEGPAFGVDPAIITAME 312

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A     A+   G+   ++++D  + K ++LE+N +
Sbjct: 313 SAAIQLACAVKYCGLGTVEYMYDKETHKFYFLELNPR 349


>gi|514306|gb|AAA19970.1| cytosolic acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2257

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 177 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 236

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 237 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 296

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 297 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 345


>gi|1244566|gb|AAC49275.1| acetyl-CoA carboxylase [Triticum aestivum]
 gi|1588584|prf||2208491A Ac-CoA carboxylase
          Length = 2260

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 180 PQETCHSIPEEIYKNACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 239

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 240 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 299

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 300 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 348


>gi|109896650|ref|YP_659905.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Pseudoalteromonas atlantica T6c]
 gi|109698931|gb|ABG38851.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudoalteromonas atlantica T6c]
          Length = 689

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/280 (13%), Positives = 78/280 (27%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------------PDLAFNVLH-- 59
                      G++   +    D+    VLA  +                D      H  
Sbjct: 42  ALRVIRTARQMGYRTVAVYSEADKDAAHVLAADQAVCVGPASVSESYLMIDNIIAAAHKT 101

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+       +   I +      A  L   K  SK  +   GVP  P 
Sbjct: 102 QADAIHPGYGFLSENPAFARACDAAGIQFIGPDASAIELMGSKRLSKVAMLDAGVPCIPG 161

Query: 111 ILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                 +          +  P ++K   GG   G+ ++ +   +   +  + S       
Sbjct: 162 YQGAEQSDQVLVKKAADVGFPIMVKASAGGGGRGMRLVTEQGELAAQIKTARSEALSAFG 221

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
             E  ++   L    +       +             ++          P   +  ++ +
Sbjct: 222 SGELILERAVLAPRHIEIQIFADSHGNTVYLGERDCSIQRRHQKVVEEAPSPFVDEELRE 281

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + + A  A +A G +G    +FL D      ++LE+N +
Sbjct: 282 RMGQAAVSAAKACGYQGAGTVEFLVDSDKN-FYFLEMNTR 320


>gi|134109861|ref|XP_776480.1| hypothetical protein CNBC5340 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50259156|gb|EAL21833.1| hypothetical protein CNBC5340 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 733

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 64/185 (34%), Gaps = 28/185 (15%)

Query: 126 PPYVIKPLKGGSSLGIIVIKK----DQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
            P +IKP  GG   G+ +++        +     ++      D++L+E++++    +   
Sbjct: 220 YPLIIKPTHGGGGKGMRIVRDPLTLQDELLSAQREALKSFGNDEVLLERWLEKPRHVEVQ 279

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD   +   +            +             +   + ++    A  A +AI  
Sbjct: 280 VFGDQFGNCVALWERDCSVQ----RRHQKIIEEAPAPGLSPALKRDFAEKAVAAAKAINY 335

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
            G    +F+ D  + + F++E+N +              +       G    +L+ W + 
Sbjct: 336 VGAGTVEFIMDAETGEHFFMEMNTR----------LQVEHPVTEMITGM---DLIEWQLS 382

Query: 295 DASCL 299
            A+  
Sbjct: 383 IAAGN 387


>gi|67517221|ref|XP_658491.1| hypothetical protein AN0887.2 [Aspergillus nidulans FGSC A4]
 gi|238054299|sp|P38095|LAMA_EMENI RecName: Full=Putative urea carboxylase; AltName: Full=Lactam
           utilization protein lamA; AltName: Full=Urea amidolyase
 gi|40746760|gb|EAA65916.1| hypothetical protein AN0887.2 [Aspergillus nidulans FGSC A4]
 gi|259488827|tpe|CBF88588.1| TPA: Putative urea carboxylase (EC 6.3.4.6)(Urea amidolyase)(Lactam
           utilization protein lamA)
           [Source:UniProtKB/Swiss-Prot;Acc:P38095] [Aspergillus
           nidulans FGSC A4]
          Length = 1241

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/271 (12%), Positives = 83/271 (30%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + +A  K   A    +G   E+      +    + +      +      K  +
Sbjct: 61  YIDGDQIIDIAKRKGADAIIPGYGFLSENSNFARDVASAGLAFVGPSPESIEAFGLKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +++ +  GVP+ P     +      +     +  P ++K   GG  +G++    ++ +  
Sbjct: 121 RELATKAGVPIVPGSQGLVTSEDEAVKIAQSLGFPVMLKATAGGGGMGLLTCNTEKEVRE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++    +   +        +            ++       
Sbjct: 181 SFQTVQSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGQGKAISIGERECSIQRRHQKVI 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+       ++ K +   A    ++I        ++L D  S K F+LE+N      
Sbjct: 241 EECPSPFVTRNPELRKGLCDAAVRLAESIDYGSAGTIEYLVDDESGKFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M+  A
Sbjct: 296 ------RLQVEHGITELCYGVDLVELMLRQA 320


>gi|254714257|ref|ZP_05176068.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M644/93/1]
 gi|254717693|ref|ZP_05179504.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M13/05/1]
 gi|261219536|ref|ZP_05933817.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261322031|ref|ZP_05961228.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
 gi|260924625|gb|EEX91193.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M13/05/1]
 gi|261294721|gb|EEX98217.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M644/93/1]
          Length = 667

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 88/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++   +    +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVIQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|325093462|gb|EGC46772.1| carbamoyl-phosphate synthetase [Ajellomyces capsulatus H88]
          Length = 2446

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 530 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 589

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 590 TFGGQTALQVGIQLKGEFEKLGIRVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 649

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 650 TLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRE--LCMKAFAASPQVLIERSM 707

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 708 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 766

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 767 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 816


>gi|256159925|ref|ZP_05457643.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti M490/95/1]
 gi|256255155|ref|ZP_05460691.1| propionyl-CoA carboxylase, alpha subunit [Brucella ceti B1/94]
 gi|261222352|ref|ZP_05936633.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|265998317|ref|ZP_06110874.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M490/95/1]
 gi|260920936|gb|EEX87589.1| carbamoyl-phosphate synthase subunit L [Brucella ceti B1/94]
 gi|262552785|gb|EEZ08775.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella ceti M490/95/1]
          Length = 667

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|256369613|ref|YP_003107123.1| propionyl-CoA carboxylase, alpha subunit [Brucella microti CCM
           4915]
 gi|255999775|gb|ACU48174.1| propionyl-CoA carboxylase, alpha subunit [Brucella microti CCM
           4915]
          Length = 667

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|240277384|gb|EER40892.1| conserved hypothetical protein [Ajellomyces capsulatus H143]
          Length = 1295

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKGEFEKLGIRVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 663 TLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRE--LCMKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|23502066|ref|NP_698193.1| propionyl-CoA carboxylase subunit alpha [Brucella suis 1330]
 gi|225627658|ref|ZP_03785695.1| Biotin carboxylase domain protein [Brucella ceti str. Cudo]
 gi|254701929|ref|ZP_05163757.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis bv. 5 str.
           513]
 gi|254704474|ref|ZP_05166302.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis bv. 3 str.
           686]
 gi|254706631|ref|ZP_05168459.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           M163/99/10]
 gi|254710260|ref|ZP_05172071.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           B2/94]
 gi|256031754|ref|ZP_05445368.1| propionyl-CoA carboxylase, alpha subunit [Brucella pinnipedialis
           M292/94/1]
 gi|256061269|ref|ZP_05451419.1| propionyl-CoA carboxylase, alpha subunit [Brucella neotomae 5K33]
 gi|260168888|ref|ZP_05755699.1| propionyl-CoA carboxylase, alpha subunit [Brucella sp. F5/99]
 gi|260566281|ref|ZP_05836751.1| propionyl-COA carboxylase subunit alpha [Brucella suis bv. 4 str.
           40]
 gi|261314090|ref|ZP_05953287.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M163/99/10]
 gi|261317822|ref|ZP_05957019.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261325276|ref|ZP_05964473.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261752495|ref|ZP_05996204.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
 gi|261755154|ref|ZP_05998863.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
 gi|261758378|ref|ZP_06002087.1| propionyl-COA carboxylase subunit alpha [Brucella sp. F5/99]
 gi|265988852|ref|ZP_06101409.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           M292/94/1]
 gi|294852526|ref|ZP_06793199.1| propionyl-CoA carboxylase subunit alpha [Brucella sp. NVSL 07-0026]
 gi|23348023|gb|AAN30108.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis 1330]
 gi|225617663|gb|EEH14708.1| Biotin carboxylase domain protein [Brucella ceti str. Cudo]
 gi|260155799|gb|EEW90879.1| propionyl-COA carboxylase subunit alpha [Brucella suis bv. 4 str.
           40]
 gi|261297045|gb|EEY00542.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis B2/94]
 gi|261301256|gb|EEY04753.1| carbamoyl-phosphate synthase subunit L [Brucella neotomae 5K33]
 gi|261303116|gb|EEY06613.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella pinnipedialis M163/99/10]
 gi|261738362|gb|EEY26358.1| propionyl-COA carboxylase subunit alpha [Brucella sp. F5/99]
 gi|261742248|gb|EEY30174.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 5 str. 513]
 gi|261744907|gb|EEY32833.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella suis bv. 3 str. 686]
 gi|264661049|gb|EEZ31310.1| carbamoyl-phosphate synthase subunit L [Brucella pinnipedialis
           M292/94/1]
 gi|294821115|gb|EFG38114.1| propionyl-CoA carboxylase subunit alpha [Brucella sp. NVSL 07-0026]
          Length = 667

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|294146568|ref|YP_003559234.1| putative allophanate hydrolase subunit 2/urea carboxylase
           [Sphingobium japonicum UT26S]
 gi|292676985|dbj|BAI98502.1| putative allophanate hydrolase subunit 2/urea carboxylase
           [Sphingobium japonicum UT26S]
          Length = 1198

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/176 (16%), Positives = 61/176 (34%), Gaps = 16/176 (9%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ + + +  +       +     +      +++        + 
Sbjct: 151 IGFPVILKATAGGGGIGMRICEDEGDVREGFAAVARQGQSNFGDAGIFLERYIRRARHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                  E  V         L+  +       PA + P  + +++   A    QA   R 
Sbjct: 211 VQLFGDGEGRVMPLGERDCSLQRRNQKVVEESPAPLLPPAVRRDLIAAATRLGQAARYRS 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
               +FL+D   ++ F+LE+N +     G+T            G    +L+ WM+ 
Sbjct: 271 AGTVEFLYDAERQQFFFLEMNTRLQVEHGVTE--------EVMGI---DLVEWMIR 315


>gi|146321215|ref|YP_001200926.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
          [Streptococcus suis 98HAH33]
 gi|145692021|gb|ABP92526.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
          [Streptococcus suis 98HAH33]
          Length = 68

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 3  VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS 41
          +L GG S+EREVS+ S ++   A+    F V+   + ++
Sbjct: 26 LLYGGRSAEREVSVLSAESVMRAITYDKFPVTHYFISQN 64


>gi|126741252|ref|ZP_01756931.1| acetyl-CoA carboxylase [Roseobacter sp. SK209-2-6]
 gi|126717657|gb|EBA14380.1| acetyl-CoA carboxylase [Roseobacter sp. SK209-2-6]
          Length = 449

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V + +  + +    + S     + + +  + +      
Sbjct: 148 AADMGYPVIIKATAGGGGRGMKVAETEADLEMAFSTARSEAKAAFGNDEVYMEKYLQKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +A           +             I  +    + ++   A 
Sbjct: 208 HIEVQVFGDGKGNGVHLAERDCSLQ----RRHQKVFEEAPGPCISPEERARIGKICADAV 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   G    +FL+     + +++E+N +
Sbjct: 264 GEMSYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|322830808|ref|YP_004210835.1| urea carboxylase [Rahnella sp. Y9602]
 gi|321166009|gb|ADW71708.1| urea carboxylase [Rahnella sp. Y9602]
          Length = 1209

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+     ++++                    +++       
Sbjct: 147 AAEIGYPIMLKSTAGGGGIGLTRCDNEEALRAAWDSVKRLGEQFFRDAGVFLERFVDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P    + + R A    +++ 
Sbjct: 207 HVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEETPAPDLPQASREALHRAAVQLGKSVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +F++D    + ++LE+N +
Sbjct: 267 YRSAGTVEFIYDAARDEFYFLEVNTR 292


>gi|317145725|ref|XP_001821026.2| aspartate carbamoyltransferase [Aspergillus oryzae RIB40]
          Length = 2255

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 502 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 561

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 562 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 621

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 622 NLEEALRVVEDIKFPVIVRAAYALGGLGSGFANNMEELKD--LCTKAFAASPQVLIEKSM 679

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 680 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 738

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 739 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 788


>gi|238491056|ref|XP_002376765.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus flavus NRRL3357]
 gi|220697178|gb|EED53519.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus flavus NRRL3357]
          Length = 2545

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 502 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 561

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 562 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 621

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 622 NLEEALRVVEDIKFPVIVRAAYALGGLGSGFANNMEELKD--LCTKAFAASPQVLIEKSM 679

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 680 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 738

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 739 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 788


>gi|83768887|dbj|BAE59024.1| unnamed protein product [Aspergillus oryzae]
          Length = 1866

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 466 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 525

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 526 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 585

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 586 NLEEALRVVEDIKFPVIVRAAYALGGLGSGFANNMEELKD--LCTKAFAASPQVLIEKSM 643

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 644 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 702

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 703 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 752


>gi|325297960|ref|YP_004257877.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides
           salanitronis DSM 18170]
 gi|324317513|gb|ADY35404.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides
           salanitronis DSM 18170]
          Length = 503

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ + +       D      +G   E+           I +            DK+ 
Sbjct: 61  LNIDK-IIMAAKRHGADAIHPG-YGFLSENSEFARRCREEGITFIGPDPETMDAMGDKIS 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++ + + GVPV P       +++    I      P ++K   GG   G+ +I  +  + 
Sbjct: 119 ARKHMIAAGVPVVPGTEQPLQSVEEAKEICNRIGYPVMLKASMGGGGKGMRLIHSEDEVE 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L                ++  +   
Sbjct: 179 EAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNYGNAVHLFERECSIQRRNQKI 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ +++   A  A +A+  +G    +FL D      ++LE+N +
Sbjct: 239 VEETPSPFVTPELRQKMGEAAVAAAKAVRYKGAGTIEFLVDKHRN-FYFLEMNTR 292


>gi|296120075|ref|ZP_06838629.1| pyruvate carboxylase [Corynebacterium ammoniagenes DSM 20306]
 gi|295967229|gb|EFG80500.1| pyruvate carboxylase [Corynebacterium ammoniagenes DSM 20306]
          Length = 1143

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/234 (13%), Positives = 72/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D  +         D  +   +G   E   +    E   I +         L+ DK  
Sbjct: 69  LNIDEVIRAA-KKSGADAVYPG-YGFLSERAELARACEAEGIKFIGPSAETLDLTGDKAA 126

Query: 96  SKQVVSS---CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +  ++     +    +        ++      P   K L GG   G+  I+  +    
Sbjct: 127 AVEAATAAGLPTLHDSKASTDVEELYEASKDFEYPMFAKALAGGGGRGMRFIENGKEFKE 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            + ++S            Y++   +    +    L   +  V         ++       
Sbjct: 187 RVAEASREAEAAFGDGRVYLETAVIKPQHIEVQILADGKGNVMHLFERDCSVQRRHQKVV 246

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     ++   + + A    + I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAPYLDPELRDRICQDAVNFCKHIKYEGAGTVEFLVDERGNHV-FIEMNPR 299


>gi|322418918|ref|YP_004198141.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M18]
 gi|320125305|gb|ADW12865.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M18]
          Length = 446

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 73/212 (34%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+       +   
Sbjct: 82  YGFLSENPIFAEICEKCGITFIGPSAESMRIMGDKISARQAVIKVGVPILPGTKEGVHDV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ ++    ++P     + +         E Y++ 
Sbjct: 142 NQAVKVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPEVYIER 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +    L      V         ++          P      ++ K +   A  
Sbjct: 202 YCENPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVTTPELRKAMGEAAVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+    +   +FL D  + + +++E+N +
Sbjct: 262 AAKAVNYSSVGTMEFLVD-KNNQFYFMEMNTR 292


>gi|237746940|ref|ZP_04577420.1| biotin carboxylase [Oxalobacter formigenes HOxBLS]
 gi|229378291|gb|EEO28382.1| biotin carboxylase [Oxalobacter formigenes HOxBLS]
          Length = 453

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   G+P  P         
Sbjct: 82  YGFLSENADFAERVEKSGFVFIGPRSESIRIMGDKVTAKQAMIKAGIPCVPGSDGALSDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLI 168
            +  + +   I  P +IK   GG   G+ V+  + S+   +        S++ + +  + 
Sbjct: 142 PQEIISTARKIGFPVIIKAAGGGGGRGMRVVHTEASLLNAVSMTKAEAQSAFGNPEVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   V+ D   +   +            K         +P +    +   + 
Sbjct: 202 KFLENPRHIEIQVLADDFKNAIWLGERDCSMQRRHQKVIEEAPAPDIPRR----LVDRIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + IG RG    +FL+   + + +++E+N +
Sbjct: 258 DRCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|284991555|ref|YP_003410109.1| carbamoyl-phosphate synthase large subunit [Geodermatophilus
           obscurus DSM 43160]
 gi|284064800|gb|ADB75738.1| carbamoyl-phosphate synthase, large subunit [Geodermatophilus
           obscurus DSM 43160]
          Length = 1101

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLKAEGLRVSLVNSNPATIMTDPEIADATYVEPLTPEFVEKVIAKERPDALLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+   K +V S G     S +
Sbjct: 89  TLGGQTALNIAIGLYENGVLERYGVRLIGADVDAINRGEDRQMFKDIVRSIGADAPRSRV 148

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P VI+P      LG      + S+        + +    +LIE+
Sbjct: 149 CASVEEALETAAEVGYPVVIRPSFTMGGLGSGFATDEASLRRMASHGLADSPVHTVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +  +  +      +          +  +     
Sbjct: 209 SVLGWKEYELELMRDRSDNVVVVCSIENIDAMGVHTGDSVTVAPAMTLTDREYQRMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREVGVDTGGCNIQFAVNPADGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|495725|gb|AAB42144.1| acetyl-CoA carboxylase [Medicago sativa]
          Length = 2257

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  +     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPESDLITIPDEIYRAACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +   +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLICDQHGNFAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P +   ++ +     A    +++   G +  ++L+   + + ++
Sbjct: 297 QRRHQKIIEEGPITVAPPETVKELEQ----AARRLAKSVNYVGAATVEYLYSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|58617274|ref|YP_196473.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Gardel]
 gi|58416886|emb|CAI27999.1| Propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Gardel]
          Length = 660

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/284 (13%), Positives = 90/284 (31%), Gaps = 33/284 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L+  K      DL    +H   G   E+      L    I +    
Sbjct: 51  EAVNIGPAPVGQSYLSIEKICEIARDLGVQAVHPGYGFLSENANFPEKLNDYGIEFIGPS 110

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK++  S  V + P  +    + +    I+     P +IK   GG   
Sbjct: 111 ADSIRMMADKITSKKIAESAQVNIIPGYMGIVDSSEQAEKIAESIGFPVMIKATAGGGGK 170

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++K    I      +++    +      +++        +    L      +     
Sbjct: 171 GMRIVKSRDEINQAFTSATNEASKNFRDGRIFIEKYIELPRHIEIQILADKHGNIVCLGE 230

Query: 200 YSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+    +   +++ +      + +G       +F+ D  +++ +
Sbjct: 231 RECSIQRHNQKVIEETPSPFLDERTRRKMYKQCISLARKVGYYSAGTIEFVVD-QNKQFY 289

Query: 259 WLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
           +LE+N +              +       G    +++  M+  A
Sbjct: 290 FLEMNTR----------LQVEHPVTELVTGI---DIVEEMIRIA 320


>gi|329894561|ref|ZP_08270369.1| Geranyl-CoA carboxylase biotin-containing subunit [gamma
           proteobacterium IMCC3088]
 gi|328922999|gb|EGG30325.1| Geranyl-CoA carboxylase biotin-containing subunit [gamma
           proteobacterium IMCC3088]
          Length = 663

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 75/229 (32%), Gaps = 7/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V   +  D      +G   E+           I +     +A  +  DK R+K+ + 
Sbjct: 68  ILDVAKRMGADAVHPG-YGFLSENAGFAKACAEAGILFVGPPTVAIDVMGDKARAKRAML 126

Query: 102 SCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             GVP  P       +++        I  P ++K   GG   G+ ++ ++  +   +  +
Sbjct: 127 EAGVPCVPGYQDEDQSIERLTSAAKAIGMPVMVKAAAGGGGRGMRLVHQESELESAIHMA 186

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            S         E  ++   +    +                     ++          P 
Sbjct: 187 HSEAQNAFGSSELIIEKAIIRPRHVEIQVFADEFGNTVHLGERDCSVQRRHQKVIEESPC 246

Query: 218 K-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  D+   +   A  A +A+   G    +FL D  S + ++LE+N +
Sbjct: 247 PVMTDDLRAAMGEAAIGAAKAVNYVGAGTVEFLLD-QSGEFYFLEMNTR 294


>gi|330470535|ref|YP_004408278.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
 gi|328813506|gb|AEB47678.1| carbamoyl-phosphate synthase subunit L [Verrucosispora maris
           AB-18-032]
          Length = 675

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 79/270 (29%), Gaps = 25/270 (9%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNVLHGN 61
            +   +     G +   +  D D     V                  L+ DL        
Sbjct: 14  ARRIFATCRTLGIETVAVHSDADADAPFVAEADQAVRLPGNSSAETYLRIDLILGAA-RR 72

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS------CGVPVCPSILVNR 115
            G D +      L E     + +  + L+     +K + +         +     + +  
Sbjct: 73  CGADAVHPGYGFLAENADFATAVAEAGLTWVGPPAKAIAAMGDKLAAKTLLAEAGVPMLP 132

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              ++  +   P ++K   GG   G+ +++    +   +  +             +++  
Sbjct: 133 SWTEADQVTDFPVLVKASAGGGGRGMRIVRDPAGLAEAVAGARREAASAFGDGTVFIERY 192

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                 +    +      V         ++          PA +  ++   + R A  A 
Sbjct: 193 VERGRHVEVQIVGDRHGTVLALGERDCSIQRRHQKIVEEAPALLDAEVRARLHRAAVAAG 252

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           QA+   G    +FLF     + F+LE+N +
Sbjct: 253 QAVDYVGAGTVEFLFTEE-GEFFFLEMNTR 281


>gi|307943594|ref|ZP_07658938.1| pyruvate carboxylase [Roseibium sp. TrichSKD4]
 gi|307773224|gb|EFO32441.1| pyruvate carboxylase [Roseibium sp. TrichSKD4]
          Length = 1149

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ V+  + ++  +++ +       +   +  L +      
Sbjct: 152 ALEIGYPVMLKASWGGGGRGMRVLPDEATLEKEVIAAKREAKAAFGKDEIYLEKLVQRAR 211

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD    +  +            K         L      ++ +          
Sbjct: 212 HVEVQILGDGQGGLVHLFERDCSIQRRHQKVVERAPAPYLGEAKRTELCQY----GLQIG 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+  RG    +FL D  +  ++++E+N +
Sbjct: 268 KAVNYRGAGTIEFLMDADTGSIYFIEVNPR 297


>gi|237749094|ref|ZP_04579574.1| biotin carboxylase [Oxalobacter formigenes OXCC13]
 gi|229380456|gb|EEO30547.1| biotin carboxylase [Oxalobacter formigenes OXCC13]
          Length = 453

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 77/217 (35%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +      +  +  DK+ +KQ +   G+P  P         
Sbjct: 82  YGFLSENADFAERVEKSGFVFIGPRSESIRVMGDKVSAKQTMIKAGIPCVPGSEGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
            +  + +   I  P +IK   GG   G+ V+  + S+   +  + +     + + +  + 
Sbjct: 142 PQEIIATARRIGFPVIIKAAGGGGGRGMRVVHTEASLLNAVTMTKTEAGAAFGNPEVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   V+ D   +   +            K         +P +    +   + 
Sbjct: 202 KFLENPRHIEIQVIADDHKNAIWLGERDCSMQRRHQKVIEEAPAPDIPRR----LIDRIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + IG RG    +FL+   + + +++E+N +
Sbjct: 258 ERCADACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|167524938|ref|XP_001746804.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163774584|gb|EDQ88211.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1920

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/302 (15%), Positives = 99/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+A+ +PD    
Sbjct: 188 SGSQAIKALKEEGVQTVLINPNIATVQTMKGLADKVYFLPVTPEYVEQVIAYERPDGLLL 247

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +   + I E   +    + + A   + D+    Q +S      CP+I 
Sbjct: 248 AFGGQTALNCGVELYEKGIFEKYSVRVLGTPVQAIVDTEDREIFSQKLSQIDEKCCPNIA 307

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +++       LG  V+     +      + +     Q+++E+
Sbjct: 308 CTTVDEVVAAAEKIGYPVMMRSSFALGGLGSGVVDNVDDLREKARVALNNT--TQVMLER 365

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  D Y  ++  
Sbjct: 366 SLHGW-KEIEYEVVRDCEDNTITVCNMENFDPLGIHTGESIVIAPSQTLSNDEYNMLRTT 424

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + IG  G     +  +P SR+ + +E+N +  ++  S     +   GY    +  
Sbjct: 425 AVKVVRHIGIVGECNIQYALNPFSREYYIVEVNAR--LSRSS--ALASKATGYPLAYVAA 480

Query: 291 WM 292
            +
Sbjct: 481 KL 482


>gi|126728955|ref|ZP_01744770.1| pyruvate carboxylase [Sagittula stellata E-37]
 gi|126710885|gb|EBA09936.1| pyruvate carboxylase [Sagittula stellata E-37]
          Length = 1147

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +   +L+            E Y++ + +   
Sbjct: 151 AEEIGYPLMLKASWGGGGRGMRPIEGPKELKDKVLEGRREAEAAFGNGEGYLEKMIIRAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L   +  +         ++  +       PA    +   +E+  L       + 
Sbjct: 211 HVEVQILGDKQGNIYHLYERDCSVQRRNQKVVERAPAPYLSEAQREEICELGRKICAHVN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  +   +++E+N +
Sbjct: 271 YECAGTVEFLMDMDTGAFYFIEVNPR 296


>gi|78213340|ref|YP_382119.1| carbamoyl phosphate synthase large subunit [Synechococcus sp.
           CC9605]
 gi|78197799|gb|ABB35564.1| carbamoyl-phosphate synthase, large subunit [Synechococcus sp.
           CC9605]
          Length = 1107

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 48/303 (15%), Positives = 93/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL    F+V  I+ + +                     V  V+   +PD    
Sbjct: 29  SGTQACKALRAEEFEVILINSNPASIMTDPEMADRTYIEPLTPDVVTRVIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + + A   + D++  KQ +   GV VCPS +
Sbjct: 89  TMGGQTALNLAVTLAENGTLERFGVELIGADLKAIQKAEDRLLFKQAMERIGVKVCPSGI 148

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                        + S P +I+P       G  +    +            +   Q+LIE
Sbjct: 149 ASSQEEAEAVGAAIGSFPRIIRPAFTLGGSGGGIAYNPEEYAAICKSGLEASPVSQILIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +     D   I     +     +      +          +  +   +
Sbjct: 209 QSLLGWKEFELEVMRDLADNVVIVCSIENLDPMGVHTGDSITVAPAQTLTDREYQRLRDQ 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P +  V  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SIAIIREIGVATGGSNIQFAINPDNGDVVVIEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 ARL 327


>gi|325294259|ref|YP_004280773.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064707|gb|ADY72714.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 449

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 70/216 (32%), Gaps = 8/216 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I     + +         L  DK ++++V    GVPV P    
Sbjct: 77  AIHPGYGFLSENPGFAEICTACGMKFIGPSPETMVLMGDKAKAREVAIKAGVPVVPGSGI 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +  +     I  P ++K   GG   G+ +I   +     ++ + +         E 
Sbjct: 137 IKNVQEALKVCEEIGYPVLVKAAHGGGGRGMRLITSSKEAKTLIVTAMAEAEAAFGSGEV 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           Y++        +    +      V         L+          P+    + +  ++  
Sbjct: 197 YIEKYIKNPRHIEIQVVADQFGNVVTFGERECSLQRRHQKVLEEAPSPFVDEDLRNKLSD 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    + I   G    +FL D      +++E+N +
Sbjct: 257 AAKKIAEFINYEGAGTVEFLVDKDKN-FYFIEMNTR 291


>gi|311351500|gb|ADP92935.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLCYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|311742358|ref|ZP_07716167.1| carbamoyl-phosphate synthase, large subunit [Aeromicrobium marinum
           DSM 15272]
 gi|311313986|gb|EFQ83894.1| carbamoyl-phosphate synthase, large subunit [Aeromicrobium marinum
           DSM 15272]
          Length = 1144

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 91/303 (30%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  V+AH +PD    
Sbjct: 29  SGTQACRVLQEEGIRVILVNSNPATIMTDPEFADATYVEPITPEFVEKVIAHERPDALLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         ILE   +    + + A     ++   K++V          + 
Sbjct: 89  TLGGQTALNAAISLHENGILEKYGVELIGASVEAIEKGENRQSFKRIVEELPAEWGAEVA 148

Query: 113 VNRFTMDSQHLIS-------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +         ++        P V++P       G  +   +  +        + +   +
Sbjct: 149 KSAICHTMDECLAAVDELGGYPLVVRPSFTMGGSGSGLAYDEADLHRIAGSGLALSPTTE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +L+E+ + G +     +   + D   I     +     +      +         ++  +
Sbjct: 209 VLLEESILGWKEYELEVMRDTADNVVIVCTIENLDPMGVHTGDSITVAPAMTLTDVEYQR 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  +P+  ++  +E+N  P ++  S     +   G+  
Sbjct: 269 LRNISIGVIREVGVDTGGCNIQFAVNPVDGRIVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 REL 288
            ++
Sbjct: 325 AKI 327


>gi|240102695|ref|YP_002959004.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           gammatolerans EJ3]
 gi|239910249|gb|ACS33140.1| Phosphoribosylglycinamide formyltransferase 2 (purT) [Thermococcus
           gammatolerans EJ3]
          Length = 430

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 83/288 (28%), Gaps = 28/288 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  V+   KPD     +
Sbjct: 28  GKEIAIEAQRLGVEVVAVDRYANAPAMQVAHRSYVGDMRNADFLFSVVEREKPDAIIPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +    +                    
Sbjct: 88  EAINLDALFELEKDGYFVVPNARATWIAMHRERTRETLAKEAKVPT-SRYAYATTLDELY 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
           ++   I  P   K +   S  G   ++  + IP     +     G  D++++E+++D   
Sbjct: 147 EACERIGYPCHTKAIMSSSGKGSYFVEGPEDIPKAWEVAKKKARGSADKIIVEEHIDFDV 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +      +  E+         +  +          PA+I     +EV R+A     
Sbjct: 207 EITELAVRHYDENGEVVTTFPKPVGHY-QIDGDYHASWQPAEISEKAEREVYRIAKRITD 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            +G  G+   +        KV+  E++ +P      +    +   G+S
Sbjct: 266 VLGGLGLFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPTGFS 309


>gi|254503794|ref|ZP_05115945.1| acetyl-CoA carboxylase, biotin carboxylase [Labrenzia alexandrii
           DFL-11]
 gi|222439865|gb|EEE46544.1| acetyl-CoA carboxylase, biotin carboxylase [Labrenzia alexandrii
           DFL-11]
          Length = 447

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/221 (17%), Positives = 74/221 (33%), Gaps = 12/221 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+++KQ     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILEAHNIVFIGPTSDHIKIMGDKIQAKQTAKDLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +            I  P ++K   GG   G+ V + +  +   L  + S      GD
Sbjct: 135 DGAVTPQDDAHAIAREIGYPVLVKAAAGGGGRGMKVAQTEAELDTALSTARSEAKAAFGD 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L  +   G      +           AV   +      +             +  +  
Sbjct: 195 DALYMEKYLGKPRHIEIQVLGDGQG--NAVHLGERDCSLQRRHQKVLEEAPSPSLNPEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+  +   A + +  RG+   +FL+   + + +++E+N +
Sbjct: 253 AEIGEVVASAMRKLKYRGVGTVEFLY--ENGEFYFIEMNTR 291


>gi|167618432|ref|ZP_02387063.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis Bt4]
 gi|172046089|sp|Q2SZW6|PURT_BURTA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 404

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 75/270 (27%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +  L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERAHLVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDAFR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ D  +      +      +  ++++E +V    
Sbjct: 147 AAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASLKTRTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 267 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 294


>gi|126732722|ref|ZP_01748518.1| carbamoyl-phosphate synthase large subunit [Sagittula stellata
           E-37]
 gi|126706852|gb|EBA05922.1| carbamoyl-phosphate synthase large subunit [Sagittula stellata
           E-37]
          Length = 1110

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 19  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 78

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +L+   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 79  TMGGQTGLNTSLALEEMGVLKKYGVEMIGAKREAIEMAEDRKLFREAMDRIGLENPKATI 138

Query: 113 VNRFTM---------------DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V                    ++   +  P +I+P       G  V    +         
Sbjct: 139 VTAPKTASGKFDLDAGVSKALETLDYVGLPAIIRPAYTLGGTGGGVAYNREDYIHYCRSG 198

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 199 MDASPVGQILVDESLLGWKEFEMEVVRDKADNCIIVCSIENVDPMGVHTGDSITVAPALT 258

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P + ++  +E+N  P ++  S     
Sbjct: 259 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPENGRMVVIEMN--PRVSRSS--ALA 314

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 315 SKATGFPIAKIAAKL 329



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 53/316 (16%), Positives = 106/316 (33%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+             AL DAG++   I         D D S 
Sbjct: 577 VVVLGGGPN-------RIGQGIEFDYCCCHACFALADAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNV---------LHG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +         LHG            +   LE   IP   +   +  
Sbjct: 630 RLYFEPLTFEHVMEIMRVEQERGTLHGVIVQFGGQTPLKLANALEEAGIPILGTTPDSID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R   +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 690 LAEDRDRFLNLVNELGLKQPNNGIASTDEEAFAIAAKIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +L++ Y+ G  EL    + D         +   +       
Sbjct: 750 MDGLKRYIRDAVVVSGDSPVLLDSYLSGATELDVDALCDGENVHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+ +EV+R      +A+   G+    F     + +++ +E+N +
Sbjct: 807 HSGDSACSLPPYSLSKDLIEEVKRQTEALARALNVVGLMNVQFAI--KNGEIYLIEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|121699928|ref|XP_001268229.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus clavatus NRRL 1]
 gi|119396371|gb|EAW06803.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus clavatus NRRL 1]
          Length = 2255

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 505 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 564

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 565 TFGGQTALQVGIQLKDEFEALGVRVLGTPIDTIITTEDREFFARSMESINEKCAKSASAS 624

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L + ++    Q+LIE+ +
Sbjct: 625 TLEEALRVVEDIGFPVIVRAAYALGGLGSGFAEDMDQLRD--LCTKAFAASPQVLIEKSM 682

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 683 KGW-KEIEYEVVRDCQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 741

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 742 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 791


>gi|170734926|ref|YP_001774040.1| urea carboxylase [Burkholderia cenocepacia MC0-3]
 gi|169820964|gb|ACA95545.1| urea carboxylase [Burkholderia cenocepacia MC0-3]
          Length = 1205

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +             +      Y++       
Sbjct: 148 ADAIGYPVMLKSTAGGGGIGMSLCRDAAQLGAAFESVVRLGAANFAHAGVYLEKFVEHAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA          +   A    +A+G
Sbjct: 208 HIEVQIFGDGRGGAIALGERDCSVQRRNQKVIEETPAPDLSAAERDALHASAVRLARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YASAGTVEFVFDASTRQFYFLEVNTR----------LQVEHCVTEAVTGV---DLVEWMI 314

Query: 294 EDA 296
             A
Sbjct: 315 LQA 317


>gi|116331304|ref|YP_801022.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116124993|gb|ABJ76264.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 487

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/234 (18%), Positives = 79/234 (33%), Gaps = 15/234 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +   K +      +G   E       L+   + +      +  L  DK+ S+  +
Sbjct: 65  NILEAIRKTKAEAVHPG-YGFLSEKSEFAKALQKENVLFLGPTPESMELMGDKINSRIKM 123

Query: 101 SSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P                  I  P +IK   GG   G+  + K +     L  
Sbjct: 124 EASGVPVVPGYNGQDQNPNVLQREAEKIGYPLMIKATAGGGGKGMKRVYKPEEFLTSLES 183

Query: 157 SSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           +          G   L +       +   V GD   +V  +   +        K    + 
Sbjct: 184 AQREAQKAFGDGTVFLEKYIEMPRHVEVQVFGDKHGNVMHLFERECSIQRRHQKVIEESP 243

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              LPA    ++  E+ ++A  A Q+I   G    +F+      K ++LE+N +
Sbjct: 244 APNLPA----ELRDEICQVAVKAAQSIDYVGAGTVEFIL-GKDGKFYFLEMNTR 292


>gi|86748641|ref|YP_485137.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86571669|gb|ABD06226.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas
           palustris HaA2]
          Length = 1109

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/307 (12%), Positives = 89/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL+  G++V  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKALKQEGYRVVLVNSNPATIMTDPELADATYIEPITPEIVAKIVEKERYVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLEKFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          +      +   +
Sbjct: 149 PRSRQVKNLPDALRALDEIGFPALIRPSFTMGGTGGGIAYTKAEFIEIVESGIDASPTSE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPDDGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 44.1 bits (102), Expect = 0.028,   Method: Composition-based stats.
 Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 6/55 (10%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F       +++ LE+N +   T     P +A   G    +L   +
Sbjct: 856 LDVVGLMNVQFAI--KDGEIYVLEVNPRASRT----VPFVAKVIGMPVAKLAARI 904


>gi|83718462|ref|YP_441533.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
 gi|257139779|ref|ZP_05588041.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
 gi|83652287|gb|ABC36350.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           thailandensis E264]
          Length = 476

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 75/270 (27%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +  L    +
Sbjct: 99  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDPDALRALVDAERAHLVVPEI 158

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 159 EAIATDALAEIEAAGVAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFAQSFDAFR 218

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V++ D  +      +      +  ++++E +V    
Sbjct: 219 AAVAQIGFPCVVKPVMSSSGKGQSVVRSDADVEPAWQYAMAGGRVNHGRVIVEGFVQFDY 278

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 279 EITQLTVRAIDPASLKTRTYFCEPIGHVQVAGDYVESWQPQPMSAKALERSRDIAHRVTS 338

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RGI   +         V++ E++ +P
Sbjct: 339 ALGGRGIFGVELFV--RGDDVWFSEVSPRP 366


>gi|107028307|ref|YP_625402.1| allophanate hydrolase subunit 2 [Burkholderia cenocepacia AU 1054]
 gi|116686302|ref|YP_839549.1| biotin carboxylation region [Burkholderia cenocepacia HI2424]
 gi|105897471|gb|ABF80429.1| Allophanate hydrolase subunit 2 [Burkholderia cenocepacia AU 1054]
 gi|116652017|gb|ABK12656.1| Biotin carboxylation region [Burkholderia cenocepacia HI2424]
          Length = 1205

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ + +    +             +      Y++       
Sbjct: 148 ADAIGYPVMLKSTAGGGGIGMSLCRDAAQLGAAFESVVRLGAANFAHAGVYLEKFVEHAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++  +       PA          +   A    +A+G
Sbjct: 208 HIEVQIFGDGRGGAIALGERDCSVQRRNQKVIEETPAPDLSAAERDALHASAVRLARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+FD  +R+ ++LE+N +              +       G    +L+ WM+
Sbjct: 268 YASAGTVEFVFDASTRQFYFLEVNTR----------LQVEHCVTEAVTGV---DLVEWMI 314

Query: 294 EDA 296
             A
Sbjct: 315 LQA 317


>gi|225849280|ref|YP_002729444.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           azorense Az-Fu1]
 gi|225643250|gb|ACN98300.1| phosphoribosylglycinamide formyltransferase 2 [Sulfurihydrogenibium
           azorense Az-Fu1]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 68/255 (26%), Gaps = 18/255 (7%)

Query: 19  GKACASALEDAGFKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE 76
            +  A        +   ID+   + +  ++   KPD     +     +D +         
Sbjct: 48  AQQVA-------HRYYVIDMKNGKQIKDIVYREKPDFIVPEIEAIDTDDLIDLEKEGFTV 100

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
           +P   +          +  + + V                       I  P V+KP+   
Sbjct: 101 VPCAQAVKYTMNRIGIRRLAAEKVGLKT-SKYAFASDIETYRKKVMEIGLPCVVKPVMSS 159

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           S  G  V++  + I      +     G    +        +            T+     
Sbjct: 160 SGKGQSVVRSLEDIDRAWYYAQENARGKGSEVIIEE---FINFDYEITLLTVRTKNQGTL 216

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                  ++          P  +      + + +A      +G  GI   +        +
Sbjct: 217 FCEPIGHIQVEGDYWESWQPHIMSETALNKAKEIAKKITDELGGYGIFGCEMFV--KGDE 274

Query: 257 VFWLEINVQP---GM 268
           V++ EI+ +P   GM
Sbjct: 275 VWFNEISPRPHDTGM 289


>gi|254502523|ref|ZP_05114674.1| pyruvate carboxylase [Labrenzia alexandrii DFL-11]
 gi|222438594|gb|EEE45273.1| pyruvate carboxylase [Labrenzia alexandrii DFL-11]
          Length = 1146

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 50/151 (33%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ VI  + ++  ++L +           E Y++ 
Sbjct: 144 NEIKKQALQIGYPVMLKASWGGGGRGMRVIPDEATLEKEVLAAKREAKAAFGKDEIYLEK 203

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +      +    L   +  V   +      +             +      E+       
Sbjct: 204 LVQRARHVEVQILGDGDSVVHLFERDCSIQRRHQKVVERAPAPYLDDAKRTELCEYGLKI 263

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A+  RG    +FL D  +  ++++E+N +
Sbjct: 264 GRAVNYRGAGTVEFLMDADTGAIYFIEVNPR 294


>gi|319789203|ref|YP_004150836.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
 gi|317113705|gb|ADU96195.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
          Length = 448

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 6/218 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVC 108
           D      +G   E+     I +   I +         L  DK       +      VP  
Sbjct: 76  DAVHPG-YGFLSENPGFAEICQACGIKFIGPSPETMLLMGDKAKAREVAKKAGVPVVPGS 134

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +   +  +     I  P ++K   GG   G+ +I+  +     +  + +         
Sbjct: 135 GVVKTVQEALREAERIGFPVLVKAAHGGGGRGMRLIESARDAETQIATAMAEAEAAFGSG 194

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           E YV+        +    +  ++  V         L+          P   +  ++ +E+
Sbjct: 195 EVYVEKFVENPRHIEVQVIADSKGNVFTLFERECSLQRRHQKVVEEAPSPFVTPELRREL 254

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + A    + I   G    +FL D      +++E+N +
Sbjct: 255 SKAAASIARYINYEGAGTVEFLVDGKGN-FYFIEMNTR 291


>gi|315604176|ref|ZP_07879242.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315313882|gb|EFU61933.1| carbamoyl-phosphate synthase, large subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 1099

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/302 (10%), Positives = 85/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L++ G +V  ++ +                       V  ++   +PD    
Sbjct: 29  SGTQACRVLKEEGLRVILVNSNPATIMTDPGIADATYVEPITPEVVASIIEKERPDALLP 88

Query: 57  VLHGNFGEDG------LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G    +       +       +E+       + +    ++ ++    S   V     
Sbjct: 89  TLGGQTALNTAVALSEMGVLERFDVELIGASIDAIRAGEDREEFKAIVERSGAEVARSFI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P V++P      LG       + +     Q  + +   ++L+E+
Sbjct: 149 AHTLEECHAAAAELGYPLVVRPSFTMGGLGSGFAYTPEDLDRIAGQGLADSITTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          ++ +     
Sbjct: 209 SILGWKEYELELMRDKADNVVVVCSIENVDPVGVHTGDSITVAPALTLTDREMQRLRDIG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVIRAVGVDTGGCNIQFAVHPETGRVIVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|265984245|ref|ZP_06096980.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
 gi|264662837|gb|EEZ33098.1| carbamoyl-phosphate synthase subunit L ATP-binding protein
           [Brucella sp. 83/13]
          Length = 397

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/276 (14%), Positives = 87/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 KGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|295665107|ref|XP_002793105.1| bifunctional pyrimidine biosynthesis protein (PyrABCN)
           [Paracoccidioides brasiliensis Pb01]
 gi|226278626|gb|EEH34192.1| bifunctional pyrimidine biosynthesis protein (PyrABCN)
           [Paracoccidioides brasiliensis Pb01]
          Length = 2214

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+ H +PD  + 
Sbjct: 531 SGSQAIKALREEGIYTILINPNIATIQTSKGLVDKVYFLPVNAEFVRKVIKHERPDAIYV 590

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 591 TFGGQTALQVGIQLKDEFEQLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 650

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 651 TLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRD--LCMKAFAASPQVLIERSM 708

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 709 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 767

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 768 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 817


>gi|225680274|gb|EEH18558.1| bifunctional pyrimidine biosynthesis protein (PyrABCN)
           [Paracoccidioides brasiliensis Pb03]
          Length = 2288

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+ H +PD  + 
Sbjct: 531 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKHERPDAIYV 590

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 591 TFGGQTALQVGIQLKDEFEQLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 650

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 651 TLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRD--LCMKAFAASPQVLIERSM 708

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 709 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 767

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 768 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 817


>gi|219126596|ref|XP_002183539.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217404776|gb|EEC44721.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 1542

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 96/309 (31%), Gaps = 41/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD----------------------------RSVGLVLAHL 49
           SG  C  AL++ G +V  I+ +                              V  ++   
Sbjct: 397 SGSQCIKALKEEGIEVILINPNIATVQTSQEKEEKQARAADRVYFLPIQPNVVMDIIRKE 456

Query: 50  KPDLAFNVLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
           +PD     + G    +  VQ         E +E+  T   ++ +    +    K      
Sbjct: 457 RPDGIIVSMGGQTALNVGVQLWRSGELQAEGVEVLGTQIPVIVATEDREIFSEKLKEIDE 516

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            + +  S       + + + I  P +I+       LG    + D  +     ++ S    
Sbjct: 517 TIALSYSATNIEEAVVAANKIGYPVLIRAAYALGGLGSGFAENDAELKTMAAKAFST--S 574

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
           DQ+LI+Q + G +     +   + D         +F    +                 + 
Sbjct: 575 DQILIDQDLRGWKELEYEVVRDNSDNCITVCNMENFDPLGIHTGDSIVVAPSQTLTNRE- 633

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           Y  ++R A    + +G  G     +   P S +   +E+N +  ++  S     +   GY
Sbjct: 634 YFMLRRTALKVVRHLGIVGECNIQYALHPESERYCIIEVNAR--LSRSS--ALASKATGY 689

Query: 284 SFRELLLWM 292
               +   +
Sbjct: 690 PLAYVATKL 698


>gi|156836922|ref|XP_001642500.1| hypothetical protein Kpol_299p2 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156113037|gb|EDO14642.1| hypothetical protein Kpol_299p2 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 1832

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 59/190 (31%), Gaps = 28/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG  +G+  ++ ++ I              + +    L +   +  
Sbjct: 775 AQALGYPVMIKSTAGGGGIGLQKVENEEQIESMFATVKHLGETYFGNSGVFLEKFIENAR 834

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       I            K         LP    + +    + L  L  
Sbjct: 835 HVEVQILGDGKGKAIAIGERDCSLQRRNQKIIEETPPPNLPESTLIKMRNAAESLGALT- 893

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
                 G    ++++D    + ++LE+N +              +       G    +L+
Sbjct: 894 ---KYLGAGTVEYIYDQDRDEFYFLEVNTR----------LQVEHPITEVVTGL---DLV 937

Query: 290 LWMVEDASCL 299
            WMV+ A+  
Sbjct: 938 EWMVKLAAGN 947


>gi|325570053|ref|ZP_08145978.1| pyruvate carboxylase [Enterococcus casseliflavus ATCC 12755]
 gi|325156881|gb|EGC69052.1| pyruvate carboxylase [Enterococcus casseliflavus ATCC 12755]
          Length = 1142

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++       ++ S         E YV+      
Sbjct: 147 FADEHDYPIMIKAALGGGGRGMRVAHDEKEARDGYERAKSEAKAAFGSDEVYVEKYISNP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +    L  T   V         ++        V P   +  +  +++ + A    + +
Sbjct: 207 KHIEVQILGDTHGNVVHLFERDCSVQRRHQKVVEVAPCVSMTTEQREKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL      K +++E+N +
Sbjct: 267 GYINAGTVEFLV--EGDKFYFIEVNPR 291


>gi|281423511|ref|ZP_06254424.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oris
           F0302]
 gi|281402331|gb|EFB33162.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oris
           F0302]
          Length = 387

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 33/264 (12%)

Query: 11  EREV-SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
           EREV S+  G A A+A                    +   +PD+    +      + L  
Sbjct: 45  EREVFSMLDGDALAAA--------------------VEKHRPDIIVPEIE-AIRTERLFD 83

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYV 129
              + +++  +   +  +                                +   I  P V
Sbjct: 84  FEKQGIQVVPSARAVNFTMNRRAIRDLASRELGLRTAKYFYAKTFEEFKRAADEIGFPCV 143

Query: 130 IKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASL 187
           +KPL   S  G   +  D  +     ++     GD  +++IE+++D       +      
Sbjct: 144 VKPLMSSSGHGQSYVHNDDELQAAFHEAMEEGRGDVKEVIIEEFIDFDSEFTLLTVTQKN 203

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             T    P         +          P  I  +  K+ Q +A    +++   G+   +
Sbjct: 204 APTIFCPPIGHV-----QKGGDYRESWQPYCITEEALKQAQHMADEVTKSLSGYGLWGVE 258

Query: 248 FLFDPLSRKVFWLEINVQP---GM 268
           F       +V + E++ +P   GM
Sbjct: 259 FFMTKQ-GEVIFSELSPRPHDTGM 281


>gi|254581182|ref|XP_002496576.1| ZYRO0D03300p [Zygosaccharomyces rouxii]
 gi|238939468|emb|CAR27643.1| ZYRO0D03300p [Zygosaccharomyces rouxii]
          Length = 2221

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+ H +PD  + 
Sbjct: 457 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPATAEFVRKVILHERPDAIYV 516

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 517 TFGGQTALSVGIEMKDEFEALGVKVLGTPIDTIITTEDREMFSAAIDEIDEKCAKSRAAS 576

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 577 TLEEALQAGKEIGFPVIVRAAYALGGLGSGFADNEEELTD--LCNIAFASSPQVLVERSM 634

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 635 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLTDEDYNMLRTTAV 693

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S++   +E+N +  ++  S     +   GY   
Sbjct: 694 NVIRHLGVVGECNIQYALNPVSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 743


>gi|226355164|ref|YP_002784904.1| biotin carboxylase [Deinococcus deserti VCD115]
 gi|226317154|gb|ACO45150.1| putative Biotin carboxylase (Acetyl-CoA carboxylase subunit A)
           [Deinococcus deserti VCD115]
          Length = 445

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G  VI+  + +     Q+              ++       
Sbjct: 147 AKQIGYPVLLKASAGGGGRGQKVIRTQEELAKGFAQAQEEARLYFSDPAVIMEKFLEEFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +   +  V         ++  +       P+ +P  + +E+        + +  
Sbjct: 207 HVEVQVMGDGKGHVIHIGERDCSIQRRNQKLIEEAPSTLPDTLRQEILDAGVRLAKHVNY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+ D      +++E+N +
Sbjct: 267 AGAGTLEFIVD-RDGNYYFMEMNTR 290


>gi|148658146|ref|YP_001278351.1| carbamoyl-phosphate synthase large subunit [Roseiflexus sp. RS-1]
 gi|148570256|gb|ABQ92401.1| carbamoyl-phosphate synthase large subunit [Roseiflexus sp. RS-1]
          Length = 1113

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 93/298 (31%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   GF+V  ++ + +                     V  ++   KPD    
Sbjct: 29  SGVQACKVLRREGFRVVLVNSNPATIMTDPQMADATYIEPLTPEIVEKIIEREKPDALLP 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G  G +  ++     +L+   +    +   A AL+ D+   K+ + + G+ V     
Sbjct: 89  TVGGQTGLNLAMKLAESGVLDRYGVQLIGASPRAIALAEDRELFKRAMINAGLRVPLGET 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D    I  P +++P       G  V   +  +     +    +   Q+LIEQ
Sbjct: 149 VSTVDQALDVAARIGYPVLVRPSFTLGGSGGGVAYNEAQLREIADRGLRASPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  +  +  
Sbjct: 209 SVLGWKEYELEVMRDRADNFVVVCSIENLDPMGVHTGDSITIAPAMTLTDREYQRLREMA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +        G S   F  +P       +E+N  P ++  S     +   G+   ++
Sbjct: 269 KIIIRTVGVETGGSNIQFAVNPRDGTPLVIEMN--PRVSRSS--ALASKATGFPIAKI 322



 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 47/292 (16%), Positives = 97/292 (33%), Gaps = 40/292 (13%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL 75
           AL D G++   I         D D S  L    L  +   NV     G  G  +     +
Sbjct: 598 ALRDLGYETIMINCNPETVSTDYDTSDRLYFEPLTLEDVLNVWENESGRRGDGEETPVPM 657

Query: 76  EIPYTHSGILA-------------------SALSMDKMRSKQVVSSCGVPVCPSIL--VN 114
            + +     L                      L+ D+ R  +++    +    S +    
Sbjct: 658 LVQFGGQTPLNLAKGLTAAGVPIWGTSQDSIDLAEDRGRFSELLRRLDIMQPESGMAADL 717

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VD 173
           +        I  P +++P        + +   D+ +   + +++  + G  +LI++Y  D
Sbjct: 718 QAARKVAQRIGYPVLVRPSYVLGGRAMAIAYDDEGLAQYIQEATRISAGQPVLIDRYLED 777

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             EL    +GD    V    +   +       +S  ++  + P K+       ++     
Sbjct: 778 AFELDVDAVGDGERVVIGGIMEHVEEAG---VHSGDSAMVMPPYKVSAYHLAIIRDETIR 834

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
             +A+  +G+    F       +V+ LE+N +   T     P +A  +G   
Sbjct: 835 IGEALRVKGLMNIQFAI--KDDEVYVLEVNPRASRT----VPFVAKASGVPL 880


>gi|324118385|gb|EGC12279.1| carbamoyl-phosphate synthase [Escherichia coli E1167]
          Length = 834

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 349 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 408

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 409 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVERLKLKQPANATVTAIEMAVEKAKE 468

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L++ ++D       V  
Sbjct: 469 IGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVEVDV 525

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 526 DAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRG 585

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 586 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 628



 Score = 37.5 bits (85), Expect = 2.5,   Method: Composition-based stats.
 Identities = 18/83 (21%), Positives = 34/83 (40%), Gaps = 14/83 (16%)

Query: 222 DIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------I 273
             Y+ ++  +    + IG   G S   F  +P + ++  +E+N  P ++  S        
Sbjct: 20  KEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATG 77

Query: 274 FPE---MAA-YAGYSFRELLLWM 292
           FP     A    GY+  EL+  +
Sbjct: 78  FPIAKVAAKLAVGYTLDELMNDI 100


>gi|126642718|ref|YP_001085702.1| carbamoyl-phosphate synthase large subunit [Acinetobacter baumannii
           ATCC 17978]
          Length = 1022

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 78/269 (28%), Gaps = 12/269 (4%)

Query: 32  KVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNF--GEDGLVQAILELLEIPYTHSGILAS 87
             + I+    ++V  ++   +PD     + G         +     L +      G    
Sbjct: 8   DATYIEPITWQTVAQIIEKERPDAVLPTMGGQTALNCALALDENGVLEKYGVELIGATKE 67

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIV 143
           A+   + R     +   + +         TM+    I      P +I+P       G  +
Sbjct: 68  AIEKAEDRKLFDEAMRKIGLECPKAAIAETMEEALEIQSRFGFPVIIRPSFTMGGSGGGI 127

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               +       +    +   QLLI++ + G +     +     D   I     +F    
Sbjct: 128 AYNREEFLEICERGFDLSPTHQLLIDESLIGWKEYEMEVVRDKNDNCIIVCAIENFDPMG 187

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +          +          +  +     G S   F  +P   ++  +E+N
Sbjct: 188 VHTGDSITVAPAQTLTDKEYQLMRNASVAVLREIGVETGGSNVQFGINPKDGRMVVIEMN 247

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             P ++  S     +   G+   ++   +
Sbjct: 248 --PRVSRSS--ALASKATGFPIAKIAAKL 272



 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/294 (12%), Positives = 88/294 (29%), Gaps = 33/294 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 528 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRTEKPKGVIVQY 587

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +          P    +      +
Sbjct: 588 GGQTPLKLARALEEAGTPIIGTSPDAIDRAEDRERFQQMIQRLQLRQPNNSIVKSAEEGI 647

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  +  +   L ++   ++   +L++ ++D   E+
Sbjct: 648 SEAAKVGYPLVVRPSYVLGGRAMEIVYNEDELKRYLREAVQASNEAPVLLDHFLDDATEV 707

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I  E++R      + 
Sbjct: 708 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSKEIQDEMRRQTIAMAKE 764

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G+    F        ++ LE+N +   T     P ++   G S  ++   
Sbjct: 765 LGVVGLMNVQFAV--KGNDIYVLEVNPRASRT----VPFVSKCIGESLAKVAAR 812


>gi|260597978|ref|YP_003210549.1| Urea amidolyase [Cronobacter turicensis z3032]
 gi|260217155|emb|CBA30979.1| Urea amidolyase [Cronobacter turicensis z3032]
          Length = 1229

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 26/187 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+       S+              ++     + +      
Sbjct: 174 AADIGYPVMLKTTAGGGGIGLTRCDDAPSLAQAWESVRRQGQQFFSDDGVFIEKFISRAR 233

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   ++GD    V  +            K         LP        + +   A    
Sbjct: 234 HLEVQILGDGEGYVAALGERDCSLQRRNQKVVEETPAPGLPQ----ATREALHAAAAALG 289

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +++  R     +F++D  S + ++LE+N       P +T         A  G    +L+ 
Sbjct: 290 ESVNYRSAGTVEFIYDAGSDRFWFLEVNTRLQVEHP-VTE--------AVTGL---DLIE 337

Query: 291 WMVEDAS 297
            M+  A+
Sbjct: 338 CMINIAA 344


>gi|260943197|ref|XP_002615897.1| hypothetical protein CLUG_04779 [Clavispora lusitaniae ATCC 42720]
 gi|238851187|gb|EEQ40651.1| hypothetical protein CLUG_04779 [Clavispora lusitaniae ATCC 42720]
          Length = 1764

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 454 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNPEFVRKVIEHERPDGIYC 513

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 514 TFGGQTALSVGIALKDEFESLGVKVLGTPIDTIITTEDRELFASAMEEINEKCARSEACS 573

Query: 117 TM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+    ++ + I  P +++       LG      +  +    L   ++    Q+L+E+ +
Sbjct: 574 TVEEAVNAANAIGYPLIVRAAYALGGLGSGFADNEAELVA--LCQKAFATSPQVLVERSM 631

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 632 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 690

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 691 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 740


>gi|194222623|ref|XP_001915631.1| PREDICTED: similar to Methylcrotonoyl-CoA carboxylase subunit
           alpha, mitochondrial precursor (3-methylcrotonyl-CoA
           carboxylase 1) (MCCase subunit alpha)
           (3-methylcrotonyl-CoA:carbon dioxide ligase subunit
           alpha) (3-methylcrotonyl-CoA carboxylase biotin-contai
           [Equus caballus]
          Length = 725

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ ++     L  +       ++    L+ +     
Sbjct: 194 HAGRIGYPVMIKAVRGGGGKGMRIVRSEKEFQEQLESARREAKKSFSDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVHLFERDCSVQ----RRHQKIIEEAPGPGIRPEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|6434095|emb|CAB60644.1| D-ala,D-ala ligase [Streptococcus pneumoniae]
 gi|6634617|emb|CAB64499.1| D-alanine--D-alanine ligase [Streptococcus pneumoniae]
 gi|148711507|gb|ABR02180.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDKE-EIFLNE 146


>gi|3947731|emb|CAA13579.1| D-alanine D-alanine ligase [Streptococcus pneumoniae]
          Length = 146

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/143 (28%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDKE-EIFLNE 146


>gi|255716360|ref|XP_002554461.1| KLTH0F05874p [Lachancea thermotolerans]
 gi|238935844|emb|CAR24024.1| KLTH0F05874p [Lachancea thermotolerans]
          Length = 2220

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIEMKDEFEALGVKVLGTPIDTVITTEDRELFSNAMDEINEKCAKSKAAS 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P + +       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 580 TVEEALEAVKEIGFPVICRSAFALGGLGSGFANNEKELVD--LCNVAFASSPQVLVERSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 746


>gi|329664748|ref|NP_001192687.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Bos
           taurus]
 gi|297471075|ref|XP_002684933.1| PREDICTED: Propionyl Coenzyme A Carboxylase Alpha subunit family
           member (pcca-1)-like [Bos taurus]
 gi|296491263|gb|DAA33326.1| Propionyl Coenzyme A Carboxylase Alpha subunit family member
           (pcca-1)-like [Bos taurus]
          Length = 725

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ ++     L  +              ++    T 
Sbjct: 194 HARTIGYPVMIKAVRGGGGKGMRIVRSEKEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  ++ K++   A  A +A+
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPGPGIKPEVRKKLGEAAVRAAKAV 313

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 314 NYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 360

Query: 294 EDASCLR 300
             A+  +
Sbjct: 361 RIAAGEK 367


>gi|258648490|ref|ZP_05735959.1| carbamoyl-phosphate synthase, large subunit [Prevotella tannerae
           ATCC 51259]
 gi|260851254|gb|EEX71123.1| carbamoyl-phosphate synthase, large subunit [Prevotella tannerae
           ATCC 51259]
          Length = 1073

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   I+ +                       V  V+   +P     
Sbjct: 27  SGSQALKALKEEGIETVLINPNIATVQTSDGVADRIYFLPVTPYFVEKVIQKEQPQGIML 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     IL+   +    + + A   + D+      ++   +    S  
Sbjct: 87  AFGGQTALNCGVELFRAGILDKYNLKVLGTPVQAIMDTEDRELFVDKLNEIDIKTIKSEA 146

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    + H +  P +I+       LG      +  +        +++   Q+L+E+
Sbjct: 147 CETIEDARKAAHDLGYPVIIRAAYALGGLGSGFCDNEDELNKIA--EKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEIEYEVVRDKFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNAEYHKLRAL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 264 SIKIVRHIGIVGECNVQYAFDPYSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|255261649|ref|ZP_05340991.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
 gi|255103984|gb|EET46658.1| pyruvate carboxylase [Thalassiobium sp. R2A62]
          Length = 1147

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   G+  I  +  +   +L+            E Y++ +    
Sbjct: 150 QAAEVGYPLMLKASWGGGGRGMRPIFGEDELEEKVLEGRREAEAAFGNGEGYLEKMITRA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L   E  +         ++  +       PA        +++  L     Q +
Sbjct: 210 RHVEVQILGDQEGNIYHLYERDCSVQRRNQKVVERAPAPYLSGTQREQICNLGKKICQHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D  S + +++E+N +
Sbjct: 270 NYECAGTVEFLMDMDSGEFYFIEVNPR 296


>gi|71416178|ref|XP_810130.1| glutamine-dependent carbamoyl-phosphate synthetase [Trypanosoma
           cruzi strain CL Brener]
 gi|70874616|gb|EAN88279.1| glutamine-dependent carbamoyl-phosphate synthetase, putative
           [Trypanosoma cruzi]
          Length = 850

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL + G +   ++ +                      +V  V+   +PD    
Sbjct: 395 SGSQCLKALSEEGIETVLVNPNIATVQTDDEMADQIYFVPVTAEAVERVIEKERPDGIML 454

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     IL+   +    + I    ++ D+   +  +   +  V    +
Sbjct: 455 AWGGQTALNCGLEMDRLGILKKYNVQVLGTPISTITVTEDRDLFRNALLQINEHVAKSLA 514

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  +I  P +++        G  ++  ++ +   +  + +     Q+L+E+
Sbjct: 515 VTSIEEAVGASKVIGFPLMLRAAYCLGGQGSGIVYNEEELRHKVGVALAV--SPQVLLEE 572

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G            +    I V   + +     ++  +        +  D Y  ++  
Sbjct: 573 SVAGW-KEVEYEVVRDIYDNCITVCNMENFDPMGIHTGESIVVAPSQTLTNDEYHMLRSA 631

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    +  
Sbjct: 632 SIKIIRHLGIVGECNIQYGLDPSSHRYVVIEVNAR--LSRSS--ALASKATGYPLALVAA 687

Query: 291 WM 292
            +
Sbjct: 688 KI 689


>gi|281204668|gb|EFA78863.1| methylcrotonyl-CoA carboxylase [Polysphondylium pallidum PN500]
          Length = 703

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++++ + +   +  S   +          V+   +   
Sbjct: 182 AEKIGYPVLIKAVMGGGGKGMRIVERPEDLEDGINSSKRESKASFGDDRVLVEKYLVHPR 241

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ K++   A  A +A+G
Sbjct: 242 HVEIQVFADRHGNCVHLFERDCSVQRRHQKIIEEAPAPHLSEELRKKMGDAAVAAAKAVG 301

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+        +++E+N       P +T +            + ++L+ W ++
Sbjct: 302 YVGAGTVEFILS-QDGSFYFMEMNTRLQVEHP-ITEM-----------ITKQDLVEWQLK 348

Query: 295 DA 296
            A
Sbjct: 349 VA 350


>gi|225573666|ref|ZP_03782421.1| hypothetical protein RUMHYD_01862 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038959|gb|EEG49205.1| hypothetical protein RUMHYD_01862 [Blautia hydrogenotrophica DSM
           10507]
          Length = 447

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   +    DR  +   LA            D   N              
Sbjct: 17  IIRACRELGIQTVAVYSEADRDALHTQLADEAICIGPAAPKDSYLNMERILSATIASKAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   + +            +K  +K  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVEMCQQCNVTFIGPSAELIQKMGNKSEAKNTMRKAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +++   I  P +IK   GG   G+ + + +         +   +        
Sbjct: 137 PVYDPESALEAAREIGFPVMIKASSGGGGKGMRIAESEAEFLEHFQMAQQESVNAFGDNT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      V         ++          P      ++ +++ 
Sbjct: 197 MYLERYVRKPRHVEVQIMADKFGNVVHLGERDCSIQRRHQKMIEESPCVALTEELRQKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A +A+G       +FL D  S + F++E+N +
Sbjct: 257 QTAVRAAKAVGYENAGTIEFLLDE-SGEFFFMEMNTR 292


>gi|152988104|ref|YP_001346751.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa PA7]
 gi|150963262|gb|ABR85287.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           aeruginosa PA7]
          Length = 393

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 78/285 (27%), Gaps = 35/285 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK  A  L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVAIELQRLGCEVIAVDRYDNAPAMQVAHRSHVISMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   KP      +        LV+   E   +  T      +       R      
Sbjct: 67  LRAVIEQEKPHYIVPEIE-AIATATLVELEAEGYTVVPTARAAQLTMNREGIRRLAAEEL 125

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                                 +  P V+KP+   S  G  V+K    +        +  
Sbjct: 126 GLPTSPYHFADTFEDYRLGVERVGYPCVVKPIMSSSGKGQSVLKGPDDLQAA--WDYAQE 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        V+G            L V  +            +          P  +  
Sbjct: 184 GGRAGKGRVIVEG--FIDFDYEITLLTVRHVGGTTFCAPIGHRQVKGDYHESWQPQAMSA 241

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 242 QALAESERVARAVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|124266455|ref|YP_001020459.1| carbamoyl-phosphate synthase large subunit [Methylibium
           petroleiphilum PM1]
 gi|124259230|gb|ABM94224.1| carbamoyl-phosphate synthase large subunit [Methylibium
           petroleiphilum PM1]
          Length = 1090

 Score = 51.8 bits (122), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/315 (12%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLK---PD- 52
           SG     AL + G++V  ++ + +                     V  ++A  +   PD 
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITWSVVEKIIAKERQTHPDE 88

Query: 53  --LAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                  + G        D     +L    +    +   A   + D+++ K  ++  G+ 
Sbjct: 89  KMAILPTMGGQTALNCALDLHKHGVLSKYGVEMIGANEHAIEKAEDRLKFKDAMTGIGLH 148

Query: 107 VCPSILVNRFTMDSQHLIS---------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              S + +                     P VI+P       G  +    +       + 
Sbjct: 149 SAKSGIAHSMEEALAVQRRITSDIGGTGFPMVIRPSFTLGGTGGGIAYNPEEFEEICKRG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   +LLIE+ + G +     +     D   I     +     +      +      
Sbjct: 209 LDLSPTKELLIEESLIGWKEYEMEVVRDKADNCIIVCSIENLDPMGIHTGDSITVAPAQT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   F  +P + ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQLLRNASIAILREIGVDTGGSNVQFSINPDNGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKVAAKL 339



 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 93/296 (31%), Gaps = 33/296 (11%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 590 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVDKEKPVGVIVQY 649

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T    +  A   ++ +          P   +       +
Sbjct: 650 GGQTPLKLALDLERAGVPIVGTSPDSIDIAEDRERFQQLLHKLGLKQPPNRTARTEEAAL 709

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                I  P V++P        + ++  D+ +   + ++   +    +L+++++D  +E+
Sbjct: 710 QLAQEIGYPLVVRPSYVLGGRAMEIVHGDKDLERYMREAVRVSEKSPVLLDRFLDDAVEV 769

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    +    +   +       +S  ++  + P  +   +  E++R      +A
Sbjct: 770 DVDCISDGHDVMIGAIMEHIEQAG---VHSGDSACSLPPYALSPALQDELRRQTAAMAKA 826

Query: 238 IGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   G+    F       +  V+ LE+N +   T     P ++   G    ++   
Sbjct: 827 LQVVGLMNVQFAIQGEGDEAVVYVLEVNPRASRT----VPFVSKATGQPLAKIAAR 878


>gi|323140859|ref|ZP_08075772.1| pyruvate carboxylase [Phascolarctobacterium sp. YIT 12067]
 gi|322414597|gb|EFY05403.1| pyruvate carboxylase [Phascolarctobacterium sp. YIT 12067]
          Length = 1146

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 45/286 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G +   I   +   L L   K D A+                       
Sbjct: 16  AIRVFRACNELGIRTVAIY-SKEDTLSLHRNKADEAYMVGEGKSPTDAYLDIEDILRVAK 74

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
                 +H   G   E+  +        + +    +    +  DK+ +++     G+P+ 
Sbjct: 75  EHDVDAIHPGYGFLSENSNLARRCAEEGLIFIGPRLEHLVMFGDKINARKQAELAGIPMI 134

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSS 159
           P     +      +        P +IK + GG   G+ V+   +               +
Sbjct: 135 PGSKGTVNSLDEVLAFGEKCGYPIIIKAVNGGGGRGMRVVHSAEEAITAYDMAKSEAKKA 194

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           + + +  L +   +   +   ++GD   ++  +            K   +     LP   
Sbjct: 195 FGNDEIYLEKYLQNPKHIEVQIIGDTHGNLMHLFERDCSVQRRHQKLVEIAPAFALPI-- 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  K +   A    + +        +FL  P   K +++E+N +
Sbjct: 253 --EQRKAICEAAVKLMKNVDYISAGTVEFLATP-DGKFYFIEVNPR 295


>gi|224082168|ref|XP_002306591.1| predicted protein [Populus trichocarpa]
 gi|222856040|gb|EEE93587.1| predicted protein [Populus trichocarpa]
          Length = 2264

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V+    +     +      + S  ++  P +IK   GG   G
Sbjct: 187 PTLPWSGSHVKISSESCLVIIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 246

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 247 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSI 306

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    + +   G +  ++L+   + + ++
Sbjct: 307 QRRHQKIIEEGPITVAPP----ETVKKLEQAARRLAKCVNYVGAATVEYLYSMDTGEYYF 362

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 363 LELNPR 368


>gi|198275723|ref|ZP_03208254.1| hypothetical protein BACPLE_01898 [Bacteroides plebeius DSM 17135]
 gi|198271352|gb|EDY95622.1| hypothetical protein BACPLE_01898 [Bacteroides plebeius DSM 17135]
          Length = 503

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ + +       D      +G   E+           I +            DK+ 
Sbjct: 61  LNIDK-IIMAAKRHGVDAIHPG-YGFLSENSEFARRCRQEGIIFIGPDPETMDAMGDKIS 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++ + + GVPV P       +++    I      P ++K   GG   G+ +I  +  + 
Sbjct: 119 ARKHMIAAGVPVVPGTEQPLQSVEEAKEICNKIGYPVMLKASMGGGGKGMRLIHSEDEVE 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +         Y++        +    L                ++  +   
Sbjct: 179 EAYNTARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNFGNAVHLFERECSIQRRNQKI 238

Query: 212 THVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P   +  ++ +++   A  A +A+  +G    +FL D      ++LE+N +
Sbjct: 239 VEETPSPFVTPELRQKMGEAAVAAAKAVHYKGAGTIEFLVDKHRN-FYFLEMNTR 292


>gi|188038102|gb|ACD46686.1| cytosolic acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2261

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 180 PQETCHSIPEEIYKKACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 239

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 240 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 299

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 300 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 348


>gi|188038079|gb|ACD46672.1| cytosolic acetyl-CoA carboxylase [Triticum turgidum subsp. durum]
          Length = 2252

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 24/173 (13%), Positives = 56/173 (32%), Gaps = 5/173 (2%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +         +     +      + S  ++  P +IK   GG   GI  +  D  +   
Sbjct: 180 PQETCHSIPEEIYKKACVSTTDEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRAL 239

Query: 154 LLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q      G  + I +       L   ++ D   +V  +            K       
Sbjct: 240 FKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQRRHQKIIEEGPI 299

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P +   ++ +     A    + +  +G +  ++L+   + + ++LE+N +
Sbjct: 300 TVAPPETIKELEQ----AARRLAKCVQYQGAATVEYLYSMETGEYYFLELNPR 348


>gi|183222093|ref|YP_001840089.1| phosphoribosylglycinamide formyltransferase 2 [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
 gi|189912156|ref|YP_001963711.1| phosphoribosylglycinamide formyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167776832|gb|ABZ95133.1| Phosphoribosylglycinamide formyltransferase [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167780515|gb|ABZ98813.1| phosphoribosylglycinamide formyltransferase 2 [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Paris)']
          Length = 391

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 82/302 (27%), Gaps = 42/302 (13%)

Query: 20  KACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVLH 59
           K  A      G  V  +D                ++    + +   +  LKPD     + 
Sbjct: 23  KEVAIEANRLGVHVIAVDRYPNAPAMLVAQESRVINMLDPKELEATIRELKPDFVVPEIE 82

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
               E  +         IP   +  L       +      +                  +
Sbjct: 83  AIHTETLVTLEKDGFKIIPSAKAVNLTMNREGIRNFVANELGLIT-SQFLFADTIEDFTN 141

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIELT 178
           + H I  P V+KP+   S  G  ++K +  I        +    G   +I +     +  
Sbjct: 142 AVHTIGFPCVVKPIMSSSGKGQSLVKTEADIIKAWEYGQTGGRTGKGKMIIEEFIPFDFE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++    +D T    P         + +       +P  +        + +A      +
Sbjct: 202 ITLLTIRHIDGTSFLPPIGHR-----QVNGDYVESWMPQPMSDLALTSAKNIAETVTTGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-----------GYSFRE 287
           G  GI   +        +V++ E++ +P      +   ++              G    E
Sbjct: 257 GGFGIFGVELFV--KGDEVYFSEVSPRP--HDTGLVTLISQNVSEFSLHVRALLGLPIPE 312

Query: 288 LL 289
           L+
Sbjct: 313 LI 314


>gi|194333134|ref|YP_002014994.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
 gi|194310952|gb|ACF45347.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           aestuarii DSM 271]
          Length = 448

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ V+ + + I   LL S +           Y++    +  
Sbjct: 149 AEKIGYPVIIKPTAGGGGKGMRVVNEPEKIQKALLTSQNEAQQAFGNSGVYIEKFVESPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+ +  + +  E+   A  A  AI 
Sbjct: 209 HVEIQILADQHGNTMHLGERDCTIQRRHQKLIEETPSPVVDEALRNEMGNAAVAAASAIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D   RK +++E+N +
Sbjct: 269 YEGAGTIEFLLD-SDRKFYFMEMNTR 293


>gi|291557897|emb|CBL35014.1| D-alanine-D-alanine ligase and related ATP-grasp enzymes
           [Eubacterium siraeum V10Sc8a]
          Length = 325

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 76/291 (26%), Gaps = 29/291 (9%)

Query: 26  LEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           L++ G  V   +D D  V         D  F   H          A    +         
Sbjct: 38  LKNGGVDVITPVD-DPDVYKDT-----DWCFPDTHEGIQLAIDKGADTLWINTVLYKGHP 91

Query: 85  LAS--------ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPL 133
           +            + D        S+  + +   +      + +   +     P V+KP+
Sbjct: 92  IDDFSGIYVVGHRTKDVEMYDDKFSTNTLLLQNELPAVTDYLVTADTVYNGEYPCVLKPI 151

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
           +G  S G++     +       ++ +       ++ +   G      +            
Sbjct: 152 RGRGSQGVVKCDTPEEFIKARDEAFASGRYGDTMMAEEYLG-GTEVTLTVFPDGTSLPFI 210

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                          +                 +++   LA   +G + + R D   D  
Sbjct: 211 ERFDQKNGIAPYNGDVPVVKNSRVIEDTPQLTALRKSCELAVWLLGLKAVVRIDCRAD-K 269

Query: 254 SRKVFWLEINVQPGMTP---------VSIFPEMAAYAGYSFRELLLWMVED 295
           +      + N +P +T           S+    A  A   +  LL  M+E 
Sbjct: 270 NGNFKMFDFNPKPNLTGASRPHRQDLNSLTLMAAEAAEMDYFGLLTKMLET 320


>gi|156933942|ref|YP_001437858.1| hypothetical protein ESA_01768 [Cronobacter sakazakii ATCC BAA-894]
 gi|156532196|gb|ABU77022.1| hypothetical protein ESA_01768 [Cronobacter sakazakii ATCC BAA-894]
          Length = 1213

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 26/187 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+       S+              ++     + +      
Sbjct: 158 AEDIGYPVMLKTTAGGGGIGLTRCDDAPSLAQAWESVRRQGLQFFSDDGVFIEKFISRAR 217

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   ++GD    V  +            K         LP      ++      A    
Sbjct: 218 HLEVQILGDGKGYVAALGERDCSLQRRNQKVVEETPAPGLPQATREALHA----AAVALG 273

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +++  R     +F++D  S + ++LE+N       P +T         A  G    +L+ 
Sbjct: 274 ESVNYRSAGTVEFIYDAGSDRFWFLEVNTRLQVEHP-VTE--------AVTGL---DLIE 321

Query: 291 WMVEDAS 297
            M+  A+
Sbjct: 322 CMINVAA 328


>gi|114769518|ref|ZP_01447144.1| pyruvate carboxylase [alpha proteobacterium HTCC2255]
 gi|114550435|gb|EAU53316.1| pyruvate carboxylase [alpha proteobacterium HTCC2255]
          Length = 1148

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/153 (12%), Positives = 46/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P+++K   GG   G+  I     +   +L+            E Y++
Sbjct: 144 MNKVRQMAEAVGYPFMLKASWGGGGRGMRPIMNASELEEKVLEGRREAEAAFGNGEGYLE 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L  +   +         ++  +       PA    +  +        
Sbjct: 204 RLVQRARHVEVQILGDSFGEIYHLYERDCSVQRRNQKVVERAPAPYLTEEQRSEICSLGR 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +G       +FL D  + + F++E+N +
Sbjct: 264 KICAHVGYECAGTVEFLMDMDTEEFFFIEVNPR 296


>gi|91228892|ref|ZP_01262794.1| acetyl-CoA carboxylase [Vibrio alginolyticus 12G01]
 gi|269966804|ref|ZP_06180877.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio alginolyticus
           40B]
 gi|91187557|gb|EAS73887.1| acetyl-CoA carboxylase [Vibrio alginolyticus 12G01]
 gi|269828471|gb|EEZ82732.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio alginolyticus
           40B]
          Length = 447

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRAEKDLIQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|311064974|ref|YP_003971700.1| acetyl-/propionyl-CoA carboxylase subunit alpha AccC
           [Bifidobacterium bifidum PRL2010]
 gi|310867294|gb|ADP36663.1| AccC Acetyl-/propionyl-CoA carboxylase alpha chain [Bifidobacterium
           bifidum PRL2010]
          Length = 636

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/220 (17%), Positives = 71/220 (32%), Gaps = 15/220 (6%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E       +E     +      A     DK+ +++V  S  VP  P I 
Sbjct: 79  NAVHPGYGFLSEVPSFADKVEKAGAIWVGPHPQALIDLGDKITARRVAKSAQVPPVPGIS 138

Query: 113 VNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---GDQ 165
                +       H    P ++K   GG   GI V+  D  +    L   +       + 
Sbjct: 139 EPVRELRTLLDFSHTYGYPVMMKRTDGGGGRGITVVHDDDEMRRFYLNHDAMQGGDLDEY 198

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +       +      D   D T  +           K         LP     ++  
Sbjct: 199 FIEKFIDKARHVETQCGRDRFGDFTVYSTRDCSVQRRNQKLVEEAPAPFLPD----EVIN 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++  +      +   G+   +F+  P  RKV++LE+N +
Sbjct: 255 QLEAYSRSLFNKVDYIGLGTCEFMVTPH-RKVYFLEVNPR 293


>gi|163854759|ref|YP_001629057.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella petrii
           DSM 12804]
 gi|163258487|emb|CAP40786.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella petrii]
          Length = 404

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 72/282 (25%), Gaps = 28/282 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDR-SVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D  ++  V+   +P +    +
Sbjct: 29  GKEVTIALQRLGVEVIAVDRYADAPGQQVAHRAHVIPMTDPAALRKVIEQERPAVVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      +  +  T      +       R         V     +       
Sbjct: 89  EAIATGALVEIEAAGIARVTPTARAAQLTMNREGIRRLAAETLGLPVSPYQFVDSEAGLR 148

Query: 119 DSQHL-ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE- 176
            +    I  P V+KP+   S  G  VI     I      S          I         
Sbjct: 149 QAIDDGIGYPCVVKPVMSSSGKGQSVIHGPDDIAAAWQYSQEGGRVGAGRIIVEGFIRFD 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +                 L+          P  +     +  + +A     
Sbjct: 209 YEITLLTVRARGADGAIHTHFCEPIGHLQADGDYIESWQPHPMQPVALERARDIARAITD 268

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSIF 274
            +G  G+   +        +V++ E++ +P   GM T +S  
Sbjct: 269 NLGGMGVFGVELFV--AGDQVWFSEVSPRPHDTGMVTMISQV 308


>gi|156146054|gb|ABU53088.1| D-alanylalanine synthetase [Streptococcus mitis]
          Length = 147

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ V+  E+  G
Sbjct: 7   EEKLAYPVFTKPSNMGSSVGISKSENQEELRQSLKLAF--QYDSRVLVEQGVNAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   ++R A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRRNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFLNE 146


>gi|146304738|ref|YP_001192054.1| carbamoyl phosphate synthase large subunit [Metallosphaera sedula
           DSM 5348]
 gi|145702988|gb|ABP96130.1| carbamoyl-phosphate synthase large subunit [Metallosphaera sedula
           DSM 5348]
          Length = 1046

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 51/319 (15%), Positives = 105/319 (32%), Gaps = 42/319 (13%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     A ++ G +   ++             D+         SV  V+   +PD    
Sbjct: 26  SGSQSLKAYKEEGIETVLVNSNVATVQTSYGMADKLYMIPVTWWSVEKVIEQERPDAIAI 85

Query: 57  ------VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                  L+               +++  T    +  ALS +K R   +     VP   S
Sbjct: 86  GFGGQTALNVGVDLYKRGILQKYGIKVLGTPIEGIEKALSREKFRETMIDVKIPVPPSFS 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +   ++    I  P +++        G  V    +S+   + ++ S ++  ++L+E+
Sbjct: 146 AKSSEEALEKAEEIGYPVMVRVSFNLGGRGSTVAWDRESLRKSIDRAFSQSYIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+                     +   +       ++  +        +    ++E++ L
Sbjct: 206 YLHHW-KELEYEVVRDSKGNSAVIACVENLDPMGVHTGESIVITPCQTLDNKEFQEMRTL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AAY 280
           +    ++I   G     F  DP S   + +E N  P M+  S        +P     A  
Sbjct: 265 SMKVAESISLVGECNVQFALDPNSYTYYVIETN--PRMSRSSALASKATGYPLAYVSAKL 322

Query: 281 A-GYSFRELLLWMVEDASC 298
           + GY+  E+L   V  A+C
Sbjct: 323 SLGYTLEEILNK-VSGATC 340



 Score = 43.7 bits (101), Expect = 0.031,   Method: Composition-based stats.
 Identities = 31/256 (12%), Positives = 87/256 (33%), Gaps = 12/256 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  ++   K         G  G +   +     +++  T    +  A   +K      
Sbjct: 617 ERVLDIINKEKYTYVATFAGGQLGNNIAKKLEERGVKLFGTSGSSVDMAEDREKFSKLLD 676

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +     P   S    +        +  P +++P    S   + ++  +Q +   + ++  
Sbjct: 677 MLGIKQPEWISAKDPQEIRKFVEHVGFPVLVRPSYVLSGSSMSIVWTEQELDEVIQRARL 736

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                 ++ +   +  E     + D    +  +          E    S +ST  +P + 
Sbjct: 737 STKYPVVISKFLDNAFEAEVDAVSDGKGVLGVVMEHVE-----EAGVHSGDSTMSIPTRK 791

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
              + +++++++    + IG RG     F+        + +E+N++      S+ P  + 
Sbjct: 792 ITPVVEDLKKISLTLAREIGVRGPFNLQFVI--KDNVPYVIEMNLR---ASRSM-PFSSK 845

Query: 280 YAGYSFREL-LLWMVE 294
             G +  E+ +  +++
Sbjct: 846 AKGVNLMEMAVKGILQ 861


>gi|262392970|ref|YP_003284824.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. Ex25]
 gi|262336564|gb|ACY50359.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio sp. Ex25]
          Length = 447

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRAEKDLIQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|217966984|ref|YP_002352490.1| carbamoyl phosphate synthase-like protein [Dictyoglomus turgidum
           DSM 6724]
 gi|217336083|gb|ACK41876.1| protein of unknown function DUF201 [Dictyoglomus turgidum DSM 6724]
          Length = 320

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 44/307 (14%), Positives = 95/307 (30%), Gaps = 53/307 (17%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRS------------------------VGLVLA 47
           R VSL   K    AL   G+ V   D D +                        +     
Sbjct: 10  RRVSLV--KFFKEALNGEGY-VYTADCDPTAPGLYVADKSFLVPRVTSEDYIPLLLDKCG 66

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                L   ++          +       I    S      +  DK+ + + +     P 
Sbjct: 67  KENIKLIIPLIDPELPILAWERDKFLEKGIIPLVSSYERVMIGYDKLLTYEFLVENSFPS 126

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             +         +++ +  P +IKP  G +S+G+   +  Q +     +        + +
Sbjct: 127 PKTFSF--DKDLAENKLDFPLIIKPRFGSASIGVQKCENYQDLEFYARKI------SEPI 178

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +++++ G E+T  ++ D   +   I   K            +                E+
Sbjct: 179 LQEFLQGDEITLDILCDFEGNPISIVQRKRIKVRGGEVERGITI-----------KNYEL 227

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             L     + +   G+              ++ EIN + G      +P +  YAG +F +
Sbjct: 228 LYLTLDLVKKLKPFGVINIQCFLTSRG--FYFTEINPRFG----GGYP-LTHYAGVNFPQ 280

Query: 288 LLLWMVE 294
           L++ +++
Sbjct: 281 LIIKLIK 287


>gi|13473387|ref|NP_104954.1| pyruvate carboxylase [Mesorhizobium loti MAFF303099]
 gi|14024136|dbj|BAB50740.1| pyruvate carboxylase [Mesorhizobium loti MAFF303099]
          Length = 1152

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  ++ +        +   +  L +      
Sbjct: 156 AKEIGYPVMLKASWGGGGRGMRAIRSEADLAREVTEGKREAKAAFGKDEVYLEKLIERAR 215

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD   +   +            K         L      ++            
Sbjct: 216 HVEVQVLGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLEMSQREELCGYAL----KIA 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     G    +FL D  + K +++E+N +
Sbjct: 272 RETSYIGAGTVEFLQDADTGKFYFIEVNPR 301


>gi|152976361|ref|YP_001375878.1| pyruvate carboxylase [Bacillus cereus subsp. cytotoxis NVH 391-98]
 gi|152025113|gb|ABS22883.1| pyruvate carboxylase [Bacillus cytotoxicus NVH 391-98]
          Length = 1148

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 74/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKNNNV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLANIPVIPGSDGPVDSLEDVEEFATKYGYPIMIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 HNELEDSYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+   +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRHRICEAAVKLTKNVNYLNAGTVEFLV--KGDDFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|85703068|ref|ZP_01034172.1| acetyl-CoA carboxylase, biotin carboxylase [Roseovarius sp. 217]
 gi|85671996|gb|EAQ26853.1| acetyl-CoA carboxylase, biotin carboxylase [Roseovarius sp. 217]
          Length = 453

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 68/248 (27%), Gaps = 15/248 (6%)

Query: 32  KVSQIDVDRSVGLVLA---------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D  +   +G   E+           + +   
Sbjct: 46  EAVCIGPAPSSQSYLNVDALLHVACATGCDAIYPG-YGFLAENADFAERCAAEGLIFIGP 104

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                 L  DK  ++      GVPV       +            +  P +IK   GG  
Sbjct: 105 EAQTIRLMGDKAAARATAIKFGVPVVRGSDGVVDDPTQVEHLLDDMGFPVLIKASAGGGG 164

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ + +          Q+S            Y++        +        +       
Sbjct: 165 RGMRIARSRSEFAALFSQASREAQQAFGDASVYLERFISNVRHIEVQVFGDGKGQAVHVG 224

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+ I     +  +Q  A      +  RG    +F+FD  +R+ 
Sbjct: 225 ERDCTVQRRHQKLLEEAPSPILTATERAHIQDSALRLAAGVNYRGAGTVEFIFDADTREY 284

Query: 258 FWLEINVQ 265
           F++E+N +
Sbjct: 285 FFIEMNTR 292


>gi|312796958|ref|YP_004029880.1| phosphoribosylglycinamide formyltransferase [Burkholderia
           rhizoxinica HKI 454]
 gi|312168733|emb|CBW75736.1| Phosphoribosylglycinamide formyltransferase (EC 2.1.2.2)
           [Burkholderia rhizoxinica HKI 454]
          Length = 410

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/271 (15%), Positives = 88/271 (32%), Gaps = 25/271 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                VD    R++  ++   +P L    +
Sbjct: 31  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAYVVDMADGRALRALVEQERPHLIVPEI 90

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                ++        L E IP   +  L       +  + + +     P   +  ++   
Sbjct: 91  EAIATDELAAIEAQGLAEVIPTARATQLTMNREGIRRLAAEQLQLPTSPYAFADSLDALR 150

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGI 175
                 I  P V+KP+   S  G  V++    I      + S    H  ++++E +V   
Sbjct: 151 AAIDAGIGYPCVVKPVMSSSGKGQSVLRSAADIERAWHCAMSGGRVHHGRVIVEGFVQFD 210

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +   A+   +             L+          P  +     +  + +A    
Sbjct: 211 YEITLLTVRATDPASGGIATYFCEPVGHLQVDGDYVESWQPQPMSPLALERAREVAQRMT 270

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            A+G RG+   +        ++++ E++ +P
Sbjct: 271 AALGGRGLFGVELFV--RGDQIWFSEVSPRP 299


>gi|218526180|gb|ACK86497.1| carbamoyl-phosphate synthase [Cryptoscenea nr. obscurior SLW-2008]
          Length = 694

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       VG V+   +PD    
Sbjct: 101 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLTPEYVGQVIRSERPDGVLL 160

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E        + I +   + D+ +  + ++     V    +
Sbjct: 161 TFGGQTALNCGFELEKSKIFEKYGCKILGTPIESIIDTEDRRKFAEKINEIGEKVAPSIA 220

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P + +       LG      +  +    L   ++ H  QL+I++
Sbjct: 221 AHSVSEAVEAAKKLGYPVMARAAFSLGGLGSGFANNENELKN--LALQAFAHSSQLIIDK 278

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 279 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSSREYNLLRTT 337

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 338 AIKVIRHFGVIGECNIQYALNPYSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 393

Query: 291 WM 292
            +
Sbjct: 394 KL 395


>gi|255690552|ref|ZP_05414227.1| carbamoyl-phosphate synthase, large subunit [Bacteroides finegoldii
           DSM 17565]
 gi|260624010|gb|EEX46881.1| carbamoyl-phosphate synthase, large subunit [Bacteroides finegoldii
           DSM 17565]
          Length = 1073

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEISMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKM-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|91205284|ref|YP_537639.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii
           RML369-C]
 gi|157827366|ref|YP_001496430.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii OSU
           85-389]
 gi|91068828|gb|ABE04550.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii
           RML369-C]
 gi|157802670|gb|ABV79393.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia bellii OSU
           85-389]
          Length = 665

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 31/276 (11%), Positives = 86/276 (31%), Gaps = 34/276 (12%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++   +     +      +G   E+     +L+   +              DK+ +K++
Sbjct: 68  KNLVSAIRESGANAVHPG-YGFLSENPNFANVLKREGVVLIGPNAATIKKMGDKIEAKKI 126

Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-- 153
               GV   P  +     +         I  P ++K   GG   G+ ++     +     
Sbjct: 127 AIEAGVSTVPGYMGTINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRMVNNPSEMANAFE 186

Query: 154 ---LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L   +S++     + +       +   ++ D   +   +   +        ++    
Sbjct: 187 SAKLEAGNSFSDDRLFIEKLIQRPRHIEIQLLADQYGNSVCLGERECSIQ----RHHQKV 242

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                 + I  +I +E+ R      + +G       +F+ D      ++LE+N +     
Sbjct: 243 IEEAPSSFITEEIRQEMYRQVISLSKKVGYYSAGTVEFIVDSEKN-FYFLEMNTR----- 296

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +++  M++ A+  +
Sbjct: 297 -----LQVEHPVTELITGI---DIVEEMIKIAAGKK 324


>gi|300784658|ref|YP_003764949.1| carbamoyl-phosphate synthase large subunit [Amycolatopsis
           mediterranei U32]
 gi|299794172|gb|ADJ44547.1| carbamoyl-phosphate synthase large subunit [Amycolatopsis
           mediterranei U32]
          Length = 1104

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEFADATYIEPVTPDFVEKVIAAERPDALLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G            + +L+   +    + I A     D+ + K +V +    VP    
Sbjct: 89  TLGGQTALNCAVALHERGVLDKYGVELIGADIDAIQRGEDRQKFKDIVRTIGAEVPRSRV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   D+   +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CHDMDEVRDTVKDLGLPVVIRPSFTMGGLGSGMAHTPEDLERLASTGLAESPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +  +  +      +          +        
Sbjct: 209 SVLGWKEYELELMRDKHDNVVVVCSIENIDAMGVHTGDSVTVAPTMTLTDREYQVMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P   ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREVGVDTGGCNIQFAINPRDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|153009332|ref|YP_001370547.1| carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
 gi|151561220|gb|ABS14718.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ochrobactrum
           anthropi ATCC 49188]
          Length = 667

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/276 (15%), Positives = 84/276 (30%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +DR +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDR-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ S  GV   P  +      D    IS     P +IK   GG   G+ +   D    
Sbjct: 119 SKKLASEAGVSTVPGHMGLIEDADEAVRISTSVGYPVMIKASAGGGGKGMRIAWNDDEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D      ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIVDGSRN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|126725153|ref|ZP_01740996.1| carbamoyl-phosphate synthase large subunit [Rhodobacterales
           bacterium HTCC2150]
 gi|126706317|gb|EBA05407.1| carbamoyl-phosphate synthase large subunit [Rhodobacterales
           bacterium HTCC2150]
          Length = 1098

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 93/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 37  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 96

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   +  +   G+    + +
Sbjct: 97  TMGGQTGLNTSLALADMGVLEKFNVELIGANRAAIEMAEDRKLFRDAMDRIGLENPRATI 156

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V     ++                  I  P +I+P       G  V    +         
Sbjct: 157 VTAPKDENGKFDLKSGVATALEALEDIGLPAIIRPAFTLGGTGGGVAYNREEYEHFCRTG 216

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +   + D   I     +     +      +      
Sbjct: 217 MDASPMGQILVDESLLGWKEFEMEVVRDTADNAIIVCAIENVDPMGVHTGDSITVAPALT 276

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 277 LTDKEYQIMRNDSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 332

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 333 SKATGFPIAKIAAKL 347



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 52/317 (16%), Positives = 103/317 (32%), Gaps = 51/317 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             +L D G++   I         D D S 
Sbjct: 585 VVILGGGPN-------RIGQGIEFDYCCCHACYSLTDQGYETIMINCNPETVSTDYDTSD 637

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 638 RLYFEPLSFEHVMEILRVEQENGTLHGVIVQFGGQTPLKLANALHDEGIPILGTTPDAID 697

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V S  +    +     +   M     +  P VI+P        + +++ 
Sbjct: 698 LAEDRERFQQLVQSLDLMQPKNGIAHSDAEAMAIADEVGYPLVIRPSYVLGGRAMEIVRD 757

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 758 TPQLERYIKEAVVVSGDSPVLLDSYLAGAIEIDVDAICDGETVHVAGIMQHIEEAG---V 814

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +I  E+ R   L   A+   G+    F        V+ +E+N +
Sbjct: 815 HSGDSACSLPPYSLSAEIITELHRQTKLLALALNVVGLMNIQFAV--KDGDVYLIEVNPR 872

Query: 266 PGMTPVSIFPEMAAYAG 282
              T     P +A    
Sbjct: 873 ASRT----VPFVAKAVN 885


>gi|56695825|ref|YP_166176.1| carbamoyl phosphate synthase large subunit [Ruegeria pomeroyi
           DSS-3]
 gi|56677562|gb|AAV94228.1| carbamoyl-phosphate synthase, large subunit [Ruegeria pomeroyi
           DSS-3]
          Length = 1122

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 81/315 (25%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGL-------------------VQAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +                      +  +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTSLALEEMGVLDKFGVEMIGAKRHAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                               MD+   I  P +I+P       G  V              
Sbjct: 149 VSAPKNEKGKFDIRAGLAEAMDALEDIGLPAIIRPAFTLGGTGGGVAYNRDDYEHFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +     D   I     +     +      +      
Sbjct: 209 LEASPVAQILIDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 49/319 (15%), Positives = 106/319 (33%), Gaps = 52/319 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 588 VVILGGGPN-------RIGQGIEFDYCCCHACFALTDVGYETIMINCNPETVSTDYDTSD 640

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 641 RLYFEPLTFEHVMEILRVEQQNGTLHGVIVQFGGQTPLKLANALEQAGIPILGTTPDAID 700

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+  G+    + + +           I  P VI+P        + +++ 
Sbjct: 701 LAEDRERFQDLVNRLGLKQPRNGIASTDAQALAIAEDIGFPLVIRPSYVLGGRAMEIVRD 760

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +EL    + D         +   +       
Sbjct: 761 MDQLRRYIAEAVVVSGDSPVLLDSYLSGAVELDVDALCDGEAVHVAGIMQHIEEAG---V 817

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEI 262
           +S  ++  + P  +  +I ++++       +A+   G+    F          +++ +E+
Sbjct: 818 HSGDSACSLPPYSLSAEIIEQIKDQTNKLARALNVVGLMNVQFAIKANEQGVDEIYLIEV 877

Query: 263 NVQPGMTPVSIFPEMAAYA 281
           N +   T     P +A   
Sbjct: 878 NPRASRT----VPFVAKAT 892


>gi|325000917|ref|ZP_08122029.1| carbamoyl-phosphate synthase large subunit [Pseudonocardia sp. P1]
          Length = 1098

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L+  G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLQAEGIRVSLVNSNPATIMTDPEFADATYVEPITPEFVEKVIATERPDAILA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            L G    +         +LE   +    + + A     D+++ K +V+     VP    
Sbjct: 89  TLGGQTALNTAIALHENGVLERYGVELIGADVEAIERGEDRLKFKDIVTQVGGDVPRSRV 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P VI+P      LG  +      +          +   ++LIE+
Sbjct: 149 CHSMDEVRAAAGELGLPVVIRPSFTMGGLGSGMAHSSDELDRLAGAGLDASPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +        
Sbjct: 209 SVLGWKEYELELMRDHHDNVVVVCSIENLDPMGVHTGDSITVAPAMTLTDREYQHMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F   P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRAVGVDTGGCNIQFAIHPETGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326


>gi|322827621|gb|EFZ31726.1| glutamine-dependent carbamoyl-phosphate synthetase, putative
           [Trypanosoma cruzi]
          Length = 844

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 97/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL + G +   ++ +                      +V  V+   +PD    
Sbjct: 395 SGSQCLKALSEEGIETVLVNPNIATVQTDDEMADQIYFVPITAEAVERVIEKERPDGIML 454

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     IL+   +    + I    ++ D+   +  +   +  V    +
Sbjct: 455 AWGGQTALNCGLEMDRLGILKKYNVQVLGTPISTITVTEDRDLFRNALLQINEHVAKSLA 514

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++        G  ++  ++ +   +  + +     Q+L+E+
Sbjct: 515 VTSIEEAVGASKEIGFPLMLRAAYCLGGQGSGIVYNEEELRHKVGVALAV--SPQVLLEE 572

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G            +    I V   + +     ++  +        +  D Y  ++  
Sbjct: 573 SVAGW-KEVEYEVVRDIYDNCITVCNMENFDPMGIHTGESIVVAPSQTLTNDEYHMLRSA 631

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    +  
Sbjct: 632 SIKIIRHLGIVGECNIQYGLDPSSHRYVVIEVNAR--LSRSS--ALASKATGYPLALVAA 687

Query: 291 WM 292
            +
Sbjct: 688 KI 689


>gi|300779700|ref|ZP_07089556.1| pyruvate carboxylase [Corynebacterium genitalium ATCC 33030]
 gi|300533810|gb|EFK54869.1| pyruvate carboxylase [Corynebacterium genitalium ATCC 33030]
          Length = 1152

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 71/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  S+         D  +   +G   E   +        I +         L+ DK  
Sbjct: 78  LDI-ESIIDAAKQTGADAIYPG-YGFLSERAELARRCREEGIKFIGPSAETLDLTGDKAA 135

Query: 96  SKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + Q     G+P       +               P  +K + GG   G+  ++K + +  
Sbjct: 136 AVQAAERAGLPTLKDSEPSSDPAELEKFAGDFEFPVFVKAVAGGGGRGMRFVEKREDLAA 195

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S          + Y++   +    +    +      V         ++       
Sbjct: 196 LAAEASREAEAAFGDPDVYIERAVINPQHIEVQIMADAHGNVVHLFERDCSVQRRHQKVV 255

Query: 213 HVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P   I  +  + + + A    + I   G    +FL D     V ++E+N +
Sbjct: 256 EIAPAQHITEEQRQRICQDAVNFSKEINYEGAGTVEFLVDEAGNHV-FIEMNPR 308


>gi|52548485|gb|AAU82334.1| carbamoyl-phosphate synthase large chain [uncultured archaeon
           GZfos14B8]
          Length = 1066

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 36/293 (12%), Positives = 91/293 (31%), Gaps = 37/293 (12%)

Query: 24  SALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNF 62
            AL++   +   I+ +                       V  V+   K D     L G  
Sbjct: 573 KALKEEEIEAHIINNNPETVSTDYDTSDKLFFEPLTLEDVMNVIEKEKYDGVMVQLGGQT 632

Query: 63  GEDGLVQAILELLE----IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
             +  V    EL           +      ++ D+ R  +++    +P   S        
Sbjct: 633 SVNLAVPLKKELERLGSKTVIMGTDPENMDMAEDRERFSKLLLRLQIPQADSGYATTLEG 692

Query: 119 DSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GI 175
             +    I  P +++P        + ++  ++ +   + ++   +    +LI+++++   
Sbjct: 693 AKEVVLRIGFPVLVRPSYVLGGRAMEIVHDEEELVRYMREAVRVSKEKPVLIDKFLEKAT 752

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+    + D    +    +   +           ++  + P  + +D+ + V+       
Sbjct: 753 EIDVDAVCDGEEVLIGAIMEHIEEAGIHSG---DSACVIPPQSLSVDVIETVRDYVRRIA 809

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +  +G+             V+ LE+N +   T     P +A   G     L
Sbjct: 810 LGLQIKGLLNIQMAV--KDDVVYVLEVNPRSSRT----IPYVAKATGIPLANL 856



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQID---------------------VDRSVGLVLAHLKPDLAFN 56
           SG     AL + G +V  ++                     V   V  ++   +PD    
Sbjct: 29  SGSQACRALREEGVEVVLVNSNPATIMTDLEMADVIYIEPLVADVVAKIVEKERPDGILA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
            L G    +   +     +L   ++    + + A   + D+ R KQ +   +  +P   +
Sbjct: 89  GLGGQTALNMTAELAELGVLSKYDVKVLGTPLEAIYDAEDRERFKQTMERINEPIPRGVT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    +  P +I+P       G  + +  + +   +      +   Q+L+E+
Sbjct: 149 VNSVAEAEEVVGELGLPLIIRPSYTLGGTGGGIARTLEELRGIVSYGLQVSRIHQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D         +  +  +              +  + ++ ++  
Sbjct: 209 SVLGWKEIEYEVMRDAKDTCITICNMENLDAMGIHTGESIVVTPT-QTLSDEEHQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G                 +E+N  P ++  S     +   GY    +  
Sbjct: 268 AIKIIRALRVEGGCNIQLAL--KEGLYRVIEVN--PRVSRSS--ALASKATGYPIARVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|21226140|ref|NP_632062.1| carbamoyl phosphate synthase large subunit [Methanosarcina mazei
           Go1]
 gi|22095493|sp|P58944|CARB_METMA RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|20904365|gb|AAM29734.1| Carbamoyl-phosphate synthase large chain [Methanosarcina mazei Go1]
          Length = 1073

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 99/298 (33%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D S  L            V+   +PD       G   
Sbjct: 574 ALREEGIETHIINNNPETVSTDFDTSDKLFFEPLTMEYVMNVIERERPDGVLVQFGGQTS 633

Query: 64  EDGLVQAILELLEIPYTHS-----GILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF 116
            +  +    EL      ++           L+ D+ +   ++   G+P          + 
Sbjct: 634 VNLALPLKKELKRRTDLNTVILGTDPEDMDLAEDREKFYLLMQELGIPQPEGGYATSQQE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            ++    I  P +++P        + ++  +  +   + ++   +    +LI+ +++   
Sbjct: 694 AIEVAKRIGFPVLVRPSYVLGGRAMEIVYDEIDLERYMKEAVRVSPEHPILIDDFLE--- 750

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235
             C +  DA  D  ++ +     +  E    S +S  V+P +    ++  +V+       
Sbjct: 751 AACEIDVDAVCDQIDVLIGAIMEHIEEAGVHSGDSACVIPPQSLSKEVLDQVRDYTRKIA 810

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +  +G+            KVF LE N +   T     P ++   G    ++   ++
Sbjct: 811 LGLRVKGLINIQM--AEKGGKVFVLEANPRSSRT----IPFVSKAVGIPLAKIAAKVI 862



 Score = 43.3 bits (100), Expect = 0.043,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 98/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G +V  ++ +                     R +  ++   +PD    
Sbjct: 29  SGSQACRSLKEEGVQVVLVNSNPATIMTDPEMADSVYIEPLDARIIEKIIEKERPDGIIA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +         + E   +    + + A   + D+   +   +     VP+  +
Sbjct: 89  GIGGQTGLNITSELAEMGVFEKYGVQILGTPVEAIKNTEDRELFKETMLSIGEKVPLSRA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   +    +  P +I+P       G  + +  + +     +    +  +Q+LIE+
Sbjct: 149 VHSLKEAEEVVEELGLPLIIRPAYTLGGAGGGIARTKEELLEITERGLRRSRINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G             + T I +   +       ++  ++       +  + ++ ++  
Sbjct: 209 SVLGW-AEVEYEVMRDANDTCIVICNMENIDPMGVHTGESAVVAPSQTLSDEEHQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     +       ++   E+N  P ++  S     +   GY    +  
Sbjct: 268 SIKIIRALKIEGGCNIQYALKEGDYRIV--EVN--PRVSRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|260063198|ref|YP_003196278.1| carbamoyl phosphate synthase large subunit [Robiginitalea biformata
           HTCC2501]
 gi|88783292|gb|EAR14464.1| carbamoyl-phosphate synthase, large subunit [Robiginitalea
           biformata HTCC2501]
          Length = 950

 Score = 51.4 bits (121), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 86/269 (31%), Gaps = 17/269 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G       +   L+   I    +   +
Sbjct: 623 DKLYFEPVFW---EHIYDIILHEKPEGVIVQLGGQ--TALKLAEKLDKYGIRIMGTSFAS 677

Query: 87  SALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+    +++    +P             +     +  P +++P       G+ ++
Sbjct: 678 LDLAEDRGSFSRLLKDNDIPYPQFGVAESADEALQLADELKFPLLVRPSYVLGGQGMKIV 737

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              + +   ++        ++LL++ Y+DG IE     + D         +   +     
Sbjct: 738 INKEELEAHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIH 797

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                 ++  + P  +   + ++++        A+   G+    F        V+ +E N
Sbjct: 798 SG---DSNATLPPFNLGEFVMQQIKDHTRKIALALNTVGLINIQFAI--KDDMVYIIEAN 852

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +   T     P +A   G  +      +
Sbjct: 853 PRASRT----VPFIAKAYGEPYVNYATRI 877



 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G K   I         D              +S+  VL    + D   
Sbjct: 29  SGSQALRSLREDGIKTVLINSNPATIMTDPSMADHVYLLPLTTKSILEVLKKHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A    I E   I      I A  ++ D+ + + ++S  GV +    
Sbjct: 89  PTMGGQTALNLCIEAGDKGIWEDFGIEIIGVDIDAINITEDREKFRDLMSRIGVAMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++ K +     L      +   +++I+
Sbjct: 149 TATSFLQGKEIAQEYGFPLVIRASYTLGGAGASIVYKPEDFDNLLSVGLETSPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KAMMGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSVTVAPAMTLSDRTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKV 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328


>gi|312183629|gb|ADQ42384.1| pyruvate carboxylase subunit A [Methanosaeta harundinacea]
          Length = 495

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 85/280 (30%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF----------------------- 55
                 A  + G     +  +     + A    +  F                       
Sbjct: 14  AIRIMRACRELGISTVAVYSEADRNALFAKYADEAVFVGPSPASQSYLRIDRILEAAEET 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+       E   + +      +      K+ ++ ++ S GVP+ P 
Sbjct: 74  GAEAIHPGYGFLSENPKFARACEEKGVVFIGPTSSSIDRMGSKIAARDIMKSAGVPIVPG 133

Query: 111 ILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P ++KP  GG  +G+ ++ +++ +   L  + S       
Sbjct: 134 SEGGISNPAEAMDLVEAIGYPVMLKPAAGGGGIGMKIVWEEKDLAPALDSARSIARSAFS 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               Y++        +    L  ++            ++          P   +  ++ +
Sbjct: 194 DETVYIEKYLTEPRHIEFQILADSKGKTIYVSDRECSIQRRHQKLIEESPSPIMTPELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           E+  +A  A +AI  R     +F++     + ++LE+N +
Sbjct: 254 EMGSIAVRAAEAIDYRSAGTVEFMY--SKGEYYFLEMNTR 291


>gi|306821084|ref|ZP_07454701.1| pyruvate carboxylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
 gi|304550878|gb|EFM38852.1| pyruvate carboxylase [Eubacterium yurii subsp. margaretiae ATCC
           43715]
          Length = 1146

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 76/235 (32%), Gaps = 15/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   E+       E  +I +        +   DK+ SK V
Sbjct: 69  DEIIKLAKKKNVDAIHPG-YGFLSENAEFAKKCEENDIVFIGPTSKIISSVGDKISSKIV 127

Query: 100 VSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +  VP  P +      +   ++  +    P ++K   GG   G+ ++K ++ +  +  
Sbjct: 128 AQAAKVPTIPGVEQAIKSDVEAVNFANSCGYPVMLKASAGGGGRGMRIVKNEEELIRNFH 187

Query: 156 Q-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           +       ++   D  + +       +   ++GD   ++  +            +     
Sbjct: 188 EARSEAKKAFGIDDIFIEKYIDSPKHIEVQILGDRYGNIVHLFERDCSIQ----RRHQKL 243

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +  +   E+   A    + +G       +FL D      +++E+N +
Sbjct: 244 IEFCPAISLSEEKRLEICNDAVKLAKHVGYINAGTVEFLVDKDMNH-YFIEVNPR 297


>gi|116327785|ref|YP_797505.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116331556|ref|YP_801274.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
 gi|116120529|gb|ABJ78572.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis L550]
 gi|116125245|gb|ABJ76516.1| D-alanine--D-alanine ligase [Leptospira borgpetersenii serovar
           Hardjo-bovis JB197]
          Length = 353

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 68/305 (22%), Positives = 121/305 (39%), Gaps = 26/305 (8%)

Query: 17  SSGKACASALEDAGFKVSQIDVDRSVGLVLAH-------LKPDLAFNVLHGNFGEDGL-- 67
            S       L + G +V  +     +   L H        +P + F+++ G    +    
Sbjct: 33  KSVDVILELLSEVGERVEFVATPNELLEKLNHYSDLDFTKRP-VLFHLMEGFRSRNRESL 91

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL-ISP 126
           + A  EL   P+T S + +  +S+DK  +K    S G+P+ P  L+   T  +     S 
Sbjct: 92  IPAAAELFGFPHTGSDVYSQNVSLDKNLTKIFAQSMGIPIVPGFLIRFETDFTVPKEFSF 151

Query: 127 PYVIKPLKGGSSL---GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT----- 178
           P  +KP   GSS       +I  ++ +   L   ++       L+E+Y+ GIE T     
Sbjct: 152 PGFLKPSGEGSSFGIGEESIIHDEKDLRFKLSSRTAEFF--PYLLEEYLTGIEYTISVIG 209

Query: 179 ---CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
               G    ++  +      K +    E   S       L    P  +   +Q  + L  
Sbjct: 210 SNVVGYRVSSAGRLVLRDDLKVEEVYGEKTKSKSVMPETLVFDCPSGLELFLQEQSRLFC 269

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP-VSIFPEMAAYAGYSFRELLLWMVE 294
            ++G  G +R D+  D L    ++LEIN+ PG++P  S FP     +  + + LL  +++
Sbjct: 270 SSLGTSGPARLDWKLDSLGN-PYFLEINLTPGLSPFYSTFPICYRRSLGNEKNLLQEILK 328

Query: 295 DASCL 299
            A   
Sbjct: 329 IARLD 333


>gi|90415232|ref|ZP_01223166.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2207]
 gi|90332555|gb|EAS47725.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2207]
          Length = 446

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 51/148 (34%), Gaps = 11/148 (7%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVDGIEL 177
            I  P +IK   GG   G+ +++ ++++   +  + S        G   + +   +   +
Sbjct: 151 KIGYPVIIKAASGGGGRGMRIVENEEALVNSVAITKSEAEAAFGDGTVYMEKFLQNPRHV 210

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V+ D       +            K         +P +    +++   +        
Sbjct: 211 EVQVLSDGQGHAIHLGDRDCSLQRRHQKVLEEAPAPGIPEEARQAVFESCTQACIE---- 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG RG    +FL+       +++E+N +
Sbjct: 267 IGYRGAGTFEFLY--EDGGFYFIEMNTR 292


>gi|119384614|ref|YP_915670.1| carbamoyl phosphate synthase large subunit [Paracoccus
           denitrificans PD1222]
 gi|119374381|gb|ABL69974.1| carbamoyl-phosphate synthase large subunit [Paracoccus
           denitrificans PD1222]
          Length = 1110

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 86/315 (27%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITPEVVEKIIAKERPDALLP 88

Query: 57  VLHGNFGEDGLV-------------------QAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +  +                   +A +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTALALADMGVLNRYGVELIGAQRAAIEMAEDRKLFREAMDRIGLENPRATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                               M++   I  P +I+P       G  V          +   
Sbjct: 149 VAAPKHPNGRYDVAAGVAMAMEALEEIGLPAIIRPAFTLGGTGGGVAYNRDDYERIVRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 LEASPVAQVLVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +  +       +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDREYQRMRNGSIAVLREIGVETGGSNVQWAINPKDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 103/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   +         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTKAGYETIMVNCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRIEQENGTLHGVIVQFGGQTPLKLANALEEEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +++++   +    +     +   ++    I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQKLLNDLDLKQPINGIAHSDAEAIEIAGRIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 MDQLNRYIREAVQVSGDSPVLLDSYLSGAIEVDVDALSDGETVHVAGIMEHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +      E++       +A+   G+    F        ++ LE+N +
Sbjct: 807 HSGDSACSLPPHTLDAATIAELKTQTEAMAKALNVVGLMNVQFAL--KDGAIYVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|301167175|emb|CBW26754.1| putative carbamoyl phosphate synthase large subunit [Bacteriovorax
           marinus SJ]
          Length = 1470

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/302 (9%), Positives = 83/302 (27%), Gaps = 41/302 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G  V  +         D D             ++  ++     D   +
Sbjct: 419 SGTQACKALKEEGIDVVLLNSNPATIMTDPDMAYRTYIEPITKDTIKKIIQKENVDAVLS 478

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            + G    +  ++   E   +      +L + +        + + +  +         RF
Sbjct: 479 TMGGQTALNICIELE-EENYLASNGVALLGANVDTINRTEDRALFALELDKLGYQTGKRF 537

Query: 117 TMDSQHLIS--------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
              S+             P +I+        G  ++     +         +    +  +
Sbjct: 538 RAHSKEEAIELASTSVGYPLIIRRDFALGGKGAALVHNLDDLNEVFTSDLKFPITMEKSL 597

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             + +             + +  I              +   +  +           +++
Sbjct: 598 LGWKELELEVMVDKDRNGVIICSIENIDPCGIHTGDSITVAPAQTISDRCYQ-----QLR 652

Query: 229 RLAFLAHQAIGCR-GISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            ++    + +G   G +   F  +P+    +  +E+N  P ++  S     +   GY   
Sbjct: 653 TMSLTIAKHMGVVAGGANVQFAINPMDEDDIVVIEMN--PRVSRSS--ALASKATGYPIA 708

Query: 287 EL 288
           ++
Sbjct: 709 KI 710



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 25/259 (9%), Positives = 75/259 (28%), Gaps = 12/259 (4%)

Query: 39   DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKM 94
               +  +L +  P        G  G +           E     +  + +    L+ D+ 
Sbjct: 1015 SEDLFDILLNENPYGVITSFSGQTGINIRSYIEDSFRKEFKTFNFLGADLNTLNLTEDRK 1074

Query: 95   RSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                V     +    S  +   +  +++   I  P +I+P        + +      I  
Sbjct: 1075 LFSMVSKKVSLSHTKSMEVQGYKNLINALTEIGLPVIIRPSFVIGGESMYIFHSHDDIEN 1134

Query: 153  DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                          + +      E     +     +         +   Y   +S  +  
Sbjct: 1135 LPRPLLDQLKNSSTIFQVETYLEEAIEYDVDLIRDNQGNCVFTVCEHIEYAGVHSGDSGM 1194

Query: 213  HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
               P ++  +++++++ ++    + +   G    +F +      ++ +E N +   T   
Sbjct: 1195 ISPPVRLSKELHEQMREISESLAKELNIIGP--INFQYAVKDNSIYCIEANPRGSRT--- 1249

Query: 273  IFPEMAAYAGYSFRELLLW 291
              P ++    +S  ++   
Sbjct: 1250 -LPFLSKAVNFSLPQIATR 1267


>gi|269139185|ref|YP_003295886.1| phosphoribosylglycinamide formyltransferase 2 [Edwardsiella tarda
           EIB202]
 gi|267984846|gb|ACY84675.1| phosphoribosylglycinamide formyltransferase 2 [Edwardsiella tarda
           EIB202]
 gi|304559102|gb|ADM41766.1| Phosphoribosylglycinamide formyltransferase 2 [Edwardsiella tarda
           FL6-60]
          Length = 377

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 75/269 (27%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     S+  ++   +PD     +
Sbjct: 9   GKEVAIECQRLGLEVIAVDRYADAPAMQVAHRSHVIDMRDGDSLRALIERERPDYIVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L         +P   +  L       +  + + ++                 
Sbjct: 69  EAIATQTLLQLESDGQRVVPCARAVQLTMNREGIRRLAAETLALPT-SPYRFADSIEAFR 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE-L 177
            +   I  P  +KP+   S  G  +++ D  +      +     GD   +    +     
Sbjct: 128 QAVAEIGYPCFVKPVMSSSGKGQSIVRGDDDVASAWQYARQGARGDADSVIVEGEVRFDF 187

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   + D      P         +          P  +        Q +A    +A
Sbjct: 188 EITLLTVQASDGIHFCAPIGHR-----QQEGDYRESWQPQAMSPAALARAQAIAASVVRA 242

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +V + E++ +P
Sbjct: 243 LGGYGLFGVELFVC--GDEVIFSEVSPRP 269


>gi|260803106|ref|XP_002596432.1| hypothetical protein BRAFLDRAFT_279690 [Branchiostoma floridae]
 gi|229281688|gb|EEN52444.1| hypothetical protein BRAFLDRAFT_279690 [Branchiostoma floridae]
          Length = 1142

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 56/152 (36%), Gaps = 11/152 (7%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYV 172
                    P ++K   GG   G+ +++  + +  +  +++S     + +G   + +   
Sbjct: 141 QQFCSEHGFPIILKAAFGGGGRGMRIVRNKEELNENFQRATSEALAAFGNGSLFIEKFIE 200

Query: 173 DGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
               +   ++GD + +V  +     S    Y+       +  + P      I + +   A
Sbjct: 201 KPRHIEVQILGDKAGNVVHLFERDCSVQRRYQKVVEYAPAPELDPV-----IREGILADA 255

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               + +G       +FL D    K +++E+N
Sbjct: 256 VKLAKFVGYENAGTVEFLLDQEQGKFYFIEVN 287


>gi|161621299|ref|YP_585206.2| acetyl-CoA carboxylase biotin carboxylase subunit [Cupriavidus
           metallidurans CH34]
          Length = 455

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKDAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEKSGFVFIGPTSENIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SDGALPDDPKEILATARRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   ++ D       +            K         +P +  
Sbjct: 194 GNPEVYMEKFLENPRHVEIQILADQHRQAIWLGERDCSMQRRHQKVIEEAPAPHIPRR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 252 --LIERIGDRCAEACKKIGYRGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|157736416|ref|YP_001489099.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           RM4018]
 gi|157698270|gb|ABV66430.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           RM4018]
          Length = 389

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 30/279 (10%)

Query: 19  GKACASALEDAGFKVSQIDV-------------------DRS-VGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                    D++ +  ++   KP      +
Sbjct: 23  GKEVIIEAQRLGIETIAVDSYNNAPAQLVANKSYTINMKDKNQLLDIIRREKPTYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L  A  E   +      +  +    +                  +       
Sbjct: 83  E-AINIQALFDAEKEGFHVIPNADAVNKTMNRKNIREFAAEQLKLPTSKYKFVTTFEALK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++  +I  P VIKP+   S  G  V + +  +      +         LI +     +  
Sbjct: 142 EAASVIGFPCVIKPVMSSSGHGQSVARSEADLEKSWEMAKEARGDASELIVEEFITFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P  +     K+ Q +A      +
Sbjct: 202 ITMLTVRNGKDTVFCEPIGHI-----QKDGDYIFSWQPMNMSEIAVKKSQEIAKTITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           G RGI   +         V++ E++ +P      +   +
Sbjct: 257 GGRGIFGVELFV--KGDDVYFSEVSPRP--HDTGMVTMI 291


>gi|73538542|ref|YP_298909.1| pyruvate carboxylase [Ralstonia eutropha JMP134]
 gi|72121879|gb|AAZ64065.1| Pyruvate carboxylase [Ralstonia eutropha JMP134]
          Length = 1169

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/239 (14%), Positives = 78/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +    K D      +G   E+      +    I +            +K+ 
Sbjct: 66  LDID-DILRIARQAKVDAIHPG-YGFLSENPDFAQAVMDAGIRWIGPSPDVMRKLGNKVA 123

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++      GVPV P+                 I  P ++K   GG   G+ +++ +Q + 
Sbjct: 124 ARNAAIEAGVPVMPATDPLPQDLDECKRLAAGIGYPLMLKASWGGGGRGMRMLENEQDLE 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L  +       + + +  + +   +   +    +GD   ++  +            K 
Sbjct: 184 TLLPAARREALAAFGNDEVYVEKLVRNARHVEVQALGDTHGNLVHLYERDCTVQRRNQKV 243

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   L A     +       A    +A+G       +FL D  S + +++E+N +
Sbjct: 244 VERAPAPYLDAAGRAALCD----AAMRLMRAVGYTHAGTIEFLMDADSGQFYFIEVNPR 298


>gi|319944339|ref|ZP_08018613.1| pyruvate carboxylase [Lautropia mirabilis ATCC 51599]
 gi|319742300|gb|EFV94713.1| pyruvate carboxylase [Lautropia mirabilis ATCC 51599]
          Length = 1172

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + + + L  +   +       E Y++ +     
Sbjct: 159 AAAIGYPLMLKASWGGGGRGMRAIETPEDLRVQLPVARRESKAAFGNDEVYLEKLVRRAH 218

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       PA     +    +   A    +A+ 
Sbjct: 219 HVEVQVLGDLHGNVVHLFERDCSVQRRNQKVVERAPAPYLTDEQRAGLCEAALKLARAVN 278

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 279 YTHAGTVEFLMDADTGKFYFIEVNPR 304


>gi|328472222|gb|EGF43092.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           parahaemolyticus 10329]
          Length = 447

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|315635550|ref|ZP_07890816.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           JV22]
 gi|315480308|gb|EFU70975.1| phosphoribosylglycinamide formyltransferase 2 [Arcobacter butzleri
           JV22]
          Length = 389

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/279 (12%), Positives = 74/279 (26%), Gaps = 30/279 (10%)

Query: 19  GKACASALEDAGFKVSQIDV-------------------DRS-VGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                    D++ +  ++   KP      +
Sbjct: 23  GKEVIIEAQRLGIETIAVDSYNNAPAQLVANKSYTINMKDKNQLLDIIRREKPTYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L  A  E   +      +  +    +                  +       
Sbjct: 83  E-AINIQALFDAEKEGFHVIPNADAVNKTMNRKNIREFAAEQLKLPTSKYKFVTTFEALK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++  +I  P VIKP+   S  G  V + +  +      +         LI +     +  
Sbjct: 142 EAASVIGFPCVIKPVMSSSGHGQSVARSEADLEKSWEMAKEARGDASELIVEEFITFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +   T    P         +          P  +     K+ Q +A      +
Sbjct: 202 ITMLTVRNGKDTVFCEPIGHI-----QKDGDYIFSWQPMNMSEVAVKKSQEIAKTITDGL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           G RGI   +         V++ E++ +P      +   +
Sbjct: 257 GGRGIFGVELFV--KGDDVYFSEVSPRP--HDTGMVTMI 291


>gi|300703019|ref|YP_003744621.1| biotin carboxylase [Ralstonia solanacearum CFBP2957]
 gi|299070682|emb|CBJ41977.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Ralstonia
           solanacearum CFBP2957]
          Length = 456

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SDGALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   V+ D   +   +            K         +P +  
Sbjct: 194 GNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 252 --LIERIGDRCADACKKIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|229162881|ref|ZP_04290838.1| Pyruvate carboxylase [Bacillus cereus R309803]
 gi|228620763|gb|EEK77632.1| Pyruvate carboxylase [Bacillus cereus R309803]
          Length = 1148

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 80/244 (32%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAKIPVIPGSDGPVNSLEEVAEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQR 239

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   +  +  LP     D+ + +   A    + +        +FL      + +++E
Sbjct: 240 RHQKVVEIAPSVSLPD----DLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|195390801|ref|XP_002054056.1| GJ23005 [Drosophila virilis]
 gi|194152142|gb|EDW67576.1| GJ23005 [Drosophila virilis]
          Length = 694

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/181 (14%), Positives = 62/181 (34%), Gaps = 14/181 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P +IK ++GG   G+ + +K +     L  + + +          ++    +  
Sbjct: 170 AAVIGFPLMIKAVRGGGGKGMRIAEKPEDFLTALNSARTESLKAFGDSSVLLERYVRSPR 229

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +E+   A  A +A+G
Sbjct: 230 HVEVQVFADQYGDAVYLWERDCSVQRRHQKIIEEAPAPGLSEELRRELGEAAVRAAKAVG 289

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGM---TPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             G    +F+ D       ++E+N +  +    P+S           +  +L+ W +  A
Sbjct: 290 YVGAGTVEFILDKEDLSFHFMEMNTR--LQVEHPISEM--------ITGTDLVEWQIRIA 339

Query: 297 S 297
           +
Sbjct: 340 A 340


>gi|329962904|ref|ZP_08300769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           fluxus YIT 12057]
 gi|328529319|gb|EGF56235.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           fluxus YIT 12057]
          Length = 503

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/149 (17%), Positives = 53/149 (35%), Gaps = 2/149 (1%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M   + I  P ++K   GG   G+ +I  +  +      + S +         Y++    
Sbjct: 145 MRICNEIGYPVMLKASMGGGGKGMRLIHHEDEVVEAYNTARSESMSSFGDDTVYLEKFVE 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +    L      V         ++  +       P+     ++ KE+   A  A +
Sbjct: 205 EPHHIEFQILGDNYGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRKEMGEKAVAAAK 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A+   G    +FL D  +R  ++LE+N +
Sbjct: 265 AVNYSGAGTIEFLVD-KNRNFYFLEMNTR 292


>gi|237725265|ref|ZP_04555746.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           D4]
 gi|229436531|gb|EEO46608.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           dorei 5_1_36/D4]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQNL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|193215113|ref|YP_001996312.1| carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
 gi|193088590|gb|ACF13865.1| Carbamoyl-phosphate synthase L chain ATP-binding [Chloroherpeton
           thalassium ATCC 35110]
          Length = 622

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/331 (15%), Positives = 114/331 (34%), Gaps = 57/331 (17%)

Query: 1   MAVLMGGISS-----ERE---VSLSSGKACASALEDAGFKVSQI-----------DVDRS 41
           + +L GG +      E +   V     +A   AL++AG++   I           D+   
Sbjct: 101 VVILGGGPNRIGQGIEFDYCCV-----QAVF-ALKEAGYEAIMINCNPETVSTDYDIADK 154

Query: 42  VGL----------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +            +L H KP        G       +   LE   I    +      ++ 
Sbjct: 155 LYFEPLTFEDTMNILEHEKPIGVIVSFGGQ--TPLRLSTSLEKSGIKILGTSSEGIDVAE 212

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D+ +  +++    +P     +        +    I  P +++P        + +I  D S
Sbjct: 213 DRKKFGELLDRLNIPHPDYGIAASIDEALELTDRIGYPVLVRPSYVLGGRAMKIIYNDDS 272

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +   + Q+   +    LLI+++++   E     + D +  V    +   +       +S 
Sbjct: 273 LREYIEQALVVSEEHPLLIDRFLEHAKEFDIDALADETDCVISGIMEHIEAAG---VHSG 329

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            +++ + P      + ++++  +    QA+G  G+    F       +VF +E+N +   
Sbjct: 330 DSTSVLPPYNASTTVIEQMKEYSRKMAQALGVVGLVNIQFAV--QDEEVFVIEVNPRASR 387

Query: 269 TPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           T     P +    G         +V+ A C 
Sbjct: 388 T----VPFVCKATGLP-------IVKVA-CN 406


>gi|171910477|ref|ZP_02925947.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobium
           spinosum DSM 4136]
          Length = 453

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 15/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D      +G   E      I +  +I +   
Sbjct: 47  EAICIGPGPSSESYLKIPRIISAAEIANVDAIHPG-YGFLSEKAEFAEICQRCKIKFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                ++  DK  ++      GVP+ P     I       +    I  P +IK   GG  
Sbjct: 106 SPEVISMMGDKNTARATARRLGVPITPGSDGIIETEEQAFEIARRIGYPVMIKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+  +  + ++     Q+S            Y++ +      +    +  +   V    
Sbjct: 166 RGMRPVLNEATLRSSFQQASMEALKCFGDGSVYMEKLVERPHHIEFQVVADSHGNVVHLG 225

Query: 199 FYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P  KI  +I + +        + IG       ++L D   +  
Sbjct: 226 ERDCSMQRRNQKIIEECPSPKISDEIRQAMGEATVKLCKEIGYENCGTIEYLVDNEGKNF 285

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 286 YFMEMNTR 293


>gi|86450067|gb|ABC96222.1| carbamoylphosphate synthetase [Apalocnemis sp. 1 JKM-2006]
          Length = 1293

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFSKYNVKIMGTPIQSIIETEDRKIFSERVAQIGEQVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVPEALEAAETLGYPVMARAAFSLGGLGSGFANNSEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|326803444|ref|YP_004321262.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Aerococcus
           urinae ACS-120-V-Col10a]
 gi|326650380|gb|AEA00563.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Aerococcus
           urinae ACS-120-V-Col10a]
          Length = 467

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + + + I +            DK  ++Q + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCQEMNITFIGPSAQVIDKMGDKQHARQTMMAANVPVIPGSKD 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      +     +  P ++K   GG   G+  +   + +     ++S           
Sbjct: 137 FIHSASEGLAEADRVGYPVLLKATSGGGGKGMRQVDCPEDLQKQFDEASREAQQGFNDAR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++ +      +    L      V         L+ +        P   I     + + 
Sbjct: 197 LYLEKVIHPAHHIEVQILADQNGHVIHLGERECSLQRNHQKVLEETPSPFISDKTRQAIC 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A + +   G    +FL D      +++E+N +
Sbjct: 257 QAAVRAGENVQYTGAGTIEFLVD-DDENFYFMEMNTR 292


>gi|320582853|gb|EFW97070.1| Urea amidolyase [Pichia angusta DL-1]
          Length = 1830

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 81/317 (25%), Gaps = 57/317 (17%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
               L+  G K   +  D D+     L     D+A   LHG    +  +     +     
Sbjct: 641 IIKTLKKLGIKSVAVYSDPDKYAQHSLIA---DVAIP-LHGVSAAETYINIDKIVKACKD 696

Query: 80  THSG---------------------------------ILASALSMDKMRSKQVVSSCGVP 106
           + +                                  I    L        +      VP
Sbjct: 697 SGAQAVVPGYGFLSENADFSDRLAAEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVP 756

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +       +    +  P ++K   GG  +G+  +     I                
Sbjct: 757 GSGLVATAAEAKEIAAKLEYPVMVKSTAGGGGIGLQKVDSPDDIERVFQTVQHQGQAYFG 816

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
               +++        +                     L+  +       PA    D    
Sbjct: 817 DAGVFLERFVENARHVEIQMFGDGYGKAIALGERDCSLQRRNQKIIEETPAPNLPDSTRA 876

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
           +++R A     ++  +     +F++D    + ++LE+N       P +T           
Sbjct: 877 KMRRAAEQLGASMNYKCAGTVEFIYDEKRDEFYFLEVNARLQVEHP-ITE--------QV 927

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+ WM+  A+
Sbjct: 928 TGL---DLVEWMLYIAA 941


>gi|320155030|ref|YP_004187409.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio vulnificus
           MO6-24/O]
 gi|319930342|gb|ADV85206.1| biotin carboxylase of acetyl-CoA carboxylase [Vibrio vulnificus
           MO6-24/O]
          Length = 448

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++K+  +   +  + +      
Sbjct: 134 SDGPLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRKEADLVQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319790507|ref|YP_004152140.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
 gi|317115009|gb|ADU97499.1| acetyl-CoA carboxylase, biotin carboxylase [Thermovibrio
           ammonificans HB-1]
          Length = 472

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 90/283 (31%), Gaps = 41/283 (14%)

Query: 19  GKACASALEDAGFKVSQID---------VDRSVGLVLAHLKP-----------DLAF--- 55
                 A ++ G K   I          V ++    L H  P           D+A    
Sbjct: 14  ATRVIRACKELGIKTVAIYSEADVNSLHVKKADEAYLIHGDPVKAYLNYYKIVDIAKRAG 73

Query: 56  -NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
              +H   G   E            I +    +    +   K+ SK+++   GVPV    
Sbjct: 74  AEAIHPGYGFLSERADFAEYARKKGIEFIGPSVEHLRIFGSKIESKKLMKELGVPVAEGS 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              I   +   +    I  P +IK   GG   G+ V + ++ +      +       +  
Sbjct: 134 EKPINDLQEAKEIAKKIGYPVMIKAAHGGGGRGLRVARNEKELETQFQIAVKEAEAAFGK 193

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G+  + +   +   +   ++ D   +V  +            K   +  + VL  +    
Sbjct: 194 GEVFIEKYIENPRHIEIQIVADKHGNVVHLGERDCSLQRRHQKVLEIAPSPVLTRRQREK 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + K        A + IG  G+   +FL D      +++E+N +
Sbjct: 254 LGKICV----EAARKIGYYGVGTWEFLMDKYGN-FYFMEVNPR 291


>gi|270284497|ref|ZP_05966225.2| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium gallicum DSM 20093]
 gi|270277014|gb|EFA22868.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Bifidobacterium gallicum DSM 20093]
          Length = 657

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 76/231 (32%), Gaps = 13/231 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +L     D      +G   E       +      +      A     DK+ +++V  
Sbjct: 77  LIEILERSGADAVHPG-YGFLSEVPSFAQAVLNAGAAWLGPNPTALEELGDKISARKVAK 135

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP  P I      M       H    P ++K   GG   GI +++ D  +    +  
Sbjct: 136 RAHVPPVPGISEPISDMRPLLDFAHTHGYPLMLKRADGGGGRGITLVRSDDELRGFYMNH 195

Query: 158 SSWNHGD---QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +   GD     +      G  +      DA  + T  +           + +       
Sbjct: 196 DALQGGDLQAYFVELFIDQGRHVETQCGRDAHGNFTVYSTRDCSLQ----RRNQKLIEEA 251

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +  ++ + ++R +    +A+   G+   +F+    + KV++LE+N +
Sbjct: 252 PAPFLTPEVEEALERNSRALFEAVDYVGLGTCEFMVT-STGKVYFLEVNPR 301


>gi|241958992|ref|XP_002422215.1| bifunctional carbamoylphosphate synthetase (CPSase)-aspartate
           transcarbamylase (ATCase), putative [Candida
           dubliniensis CD36]
 gi|223645560|emb|CAX40219.1| bifunctional carbamoylphosphate synthetase (CPSase)-aspartate
           transcarbamylase (ATCase), putative [Candida
           dubliniensis CD36]
          Length = 2220

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 468 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDGIYC 527

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 528 TFGGQTALSVGIALKDEFESLGVKVLGTQIDTVITTEDRELFASAMAEINEKCARSEACN 587

Query: 117 T----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T    +D+ + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 588 TVSEAIDAANAIGYPLIVRAAYALGGLGSGFADNEEELVS--LCNKAFATSPQVLVERSM 645

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 646 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 704

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 705 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 754


>gi|123967609|ref|YP_001008467.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. AS9601]
 gi|123197719|gb|ABM69360.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. AS9601]
          Length = 449

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++   ++      +       + +    + +      
Sbjct: 148 ADDIGYPVIIKATAGGGGRGMRLVENSNNLEKMFKAAQGEAEAAFGNDGLYMEKFIKKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D S +V  +            +             I   + K++   A  A 
Sbjct: 208 HVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINPALRKKMGNAAIAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++IG  G    +FL D      +++E+N +
Sbjct: 264 KSIGYEGAGTVEFLVDDDDN-FYFMEMNTR 292


>gi|300789737|ref|YP_003770028.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
 gi|299799251|gb|ADJ49626.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Amycolatopsis
           mediterranei U32]
          Length = 661

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP  GG   G+ ++   + +   +  +     G        ++    T  
Sbjct: 148 ASKVGYPLLLKPSAGGGGKGMRLVHAPEELDAAIESARREAKGSFGDDTLLMERFVTTPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  T   V         L+          P+ +  D+ +E     A  A +++G
Sbjct: 208 HIEIQVMADTHGNVIHLGERECSLQRRHQKIIEEAPSVLLDDVTREKMGSAAVEAARSVG 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 268 YVGAGTVEFIMSAHDPDEFFFMEMNTR 294


>gi|257059318|ref|YP_003137206.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 8802]
 gi|256589484|gb|ACV00371.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           8802]
          Length = 449

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENAKFSEICADHQITFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSWG 137

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              T      I+     P +IK   GG   G+ ++++D         +            
Sbjct: 138 VIETEQEAQEIARDIGYPVMIKATAGGGGRGMRLVREDSEFSRAFQSAQGEAEAAFGNKG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  ++  V         ++          P+     ++  ++ 
Sbjct: 198 VYLEKFIERPRHIEFQILADSQGNVVHLGERDCSIQRRHQKLLEEAPSPFLTPELRLKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A ++I   G    +FL D      +++E+N +
Sbjct: 258 EAAVKAAKSIDYVGAGTVEFLVDNQGN-FYFMEMNTR 293


>gi|238880116|gb|EEQ43754.1| protein URA1 [Candida albicans WO-1]
          Length = 2216

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDGIYC 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 524 TFGGQTALSVGIALKDEFEGLGVKVLGTQIDTVITTEDRELFASAMAEINEKCARSEACN 583

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+       + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 584 TVKEAVDAANAIGYPLIVRAAYALGGLGSGFADNEEELVA--LCNKAFATSPQVLVERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 642 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|68486937|ref|XP_712650.1| aspartate transcarbamylase [Candida albicans SC5314]
 gi|46434056|gb|EAK93477.1| aspartate transcarbamylase [Candida albicans SC5314]
          Length = 2216

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDGIYC 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 524 TFGGQTALSVGIALKDEFEGLGVKVLGTQIDTVITTEDRELFASAMAEINEKCARSEACN 583

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+       + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 584 TVKEAVDAANAIGYPLIVRAAYALGGLGSGFADNEEELVA--LCNKAFATSPQVLVERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 642 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|68486896|ref|XP_712670.1| aspartate transcarbamylase [Candida albicans SC5314]
 gi|46434079|gb|EAK93499.1| aspartate transcarbamylase [Candida albicans SC5314]
          Length = 2216

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDGIYC 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 524 TFGGQTALSVGIALKDEFEGLGVKVLGTQIDTVITTEDRELFASAMAEINEKCARSEACN 583

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+       + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 584 TVKEAVDAANAIGYPLIVRAAYALGGLGSGFADNEEELVA--LCNKAFATSPQVLVERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 642 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|333029333|ref|ZP_08457394.1| carbamoyl-phosphate synthase, large subunit [Bacteroides coprosuis
           DSM 18011]
 gi|332739930|gb|EGJ70412.1| carbamoyl-phosphate synthase, large subunit [Bacteroides coprosuis
           DSM 18011]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGIRSVLVNPNIATIQTSEGVADKVYFLPVTTHFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     IL+   +    + + A   + D+    + ++   V    S  
Sbjct: 87  AFGGQTALNCGAELYSTGILDKYGVTVLGTSVEAIMNTEDRDLFVKKLNEIEVKTPISKA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG  + K ++      L  S+ +   Q+L+E+
Sbjct: 147 VESMEDALEAARKIGYPVMVRSAYSLGGLGSGICKDEKDFIE--LAESALSFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  D  + ++ +
Sbjct: 205 SLKGW-KEIEFEVIRDSNNHCFTVAGMENFDPLGIHTGESIVVAPTCSLKEDELELLKEI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
                + +   G     + F+  ++    +E+N +  ++  S     +   GY    +  
Sbjct: 264 GVQTIRHLNIVGECNIQYAFNAETKDYRVIEVNAR--LSRSS--ALASKATGYPLALVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|315924033|ref|ZP_07920260.1| pyruvate carboxylase [Pseudoramibacter alactolyticus ATCC 23263]
 gi|315622659|gb|EFV02613.1| pyruvate carboxylase [Pseudoramibacter alactolyticus ATCC 23263]
          Length = 1145

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 75/235 (31%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D+ + L L     D      +G   E+       E   I +            DK++
Sbjct: 64  LDIDKIIALALEK-GADAIHPG-YGFLSENPAFAKRCEEAGIAFIGPTHAMMEQMGDKIQ 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK +     VP  P +     T +     +     P ++K   GG   G+ +++ ++ + 
Sbjct: 122 SKIMAKQVDVPTIPGVEKPIETDEQAIEFAKVAGYPIILKAAAGGGGRGMRIVRDEKQLL 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +   + S           +++        +    L      V         ++      
Sbjct: 182 KEYHSAVSEATKAFGDGTIFIEKYLEEPKHVEVQVLGDQYGHVVHLFERDCSIQRRHQKV 241

Query: 212 THVLPAKIPLDIYKEVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+    +  ++     A    +++        +FL D      +++E+N +
Sbjct: 242 IEFTPSLFLSEEKRQEICADAIRLAKSVNYCSAGTIEFLIDKHGNH-YFIEMNPR 295


>gi|307947211|ref|ZP_07662546.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Roseibium sp.
           TrichSKD4]
 gi|307770875|gb|EFO30101.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Roseibium sp.
           TrichSKD4]
          Length = 448

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 88/283 (31%), Gaps = 41/283 (14%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G     +    D D                       ++  +LA  +  
Sbjct: 14  ALRILRACKELGISTVAVHSTADADAMHVRLADESVCIGPPAARDSYLNIPNILAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     ILE   I +         +  DK+++KQ     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENARFAEILEAHSIEFIGPTAEHIRIMGDKIQAKQTAKDLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---H 162
                I  N         I  P ++K   GG   G+ V +    +   L  + S      
Sbjct: 133 GSEGGITSNEEAHRVADEIGYPVLVKAAAGGGGRGMKVAQSKADLETALSTARSEAKAAF 192

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           GD  L  +   G      +           AV   +      +             + L+
Sbjct: 193 GDDALYMEKYLGKPRHIEIQVLGDGKG--NAVHLGERDCSLQRRHQKVLEEAPSPCLNLE 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++  +   A + +  RG+   +FL+   + + +++E+N +
Sbjct: 251 QRGKIGEVVASAMRKLKYRGVGTIEFLY--ENGEFYFIEMNTR 291


>gi|312139569|ref|YP_004006905.1| carbamoyl-phosphate synthase long subunit carb [Rhodococcus equi
           103S]
 gi|325672547|ref|ZP_08152243.1| carbamoyl-phosphate synthase, large subunit [Rhodococcus equi ATCC
           33707]
 gi|311888908|emb|CBH48221.1| carbamoyl-phosphate synthase long subunit CarB [Rhodococcus equi
           103S]
 gi|325556424|gb|EGD26090.1| carbamoyl-phosphate synthase, large subunit [Rhodococcus equi ATCC
           33707]
          Length = 1115

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 92/318 (28%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L + G +VS ++ +                       V  V+A       K 
Sbjct: 29  SGTQACRVLREEGLRVSLVNSNPATIMTDPEFADSTYVEPITAEFVEKVIAREAANGNKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q ILE  ++    +   A     D+ + K +V  CG   
Sbjct: 89  DAVLATLGGQTALNTAVALHEQGILEKYDVELIGADFDAIQRGEDRQKFKDIVEKCGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +             +  P V++P      LG  +   +  +        + +    
Sbjct: 149 ARSRVCYTMEEVKATVAELGYPVVVRPSFTMGGLGSGMAYDEVDLERIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDGRDNVVIVCSIENVDPVGVHTGDSVTVAPAMTLTDREYQA 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFP--- 275
                  +  +     G     F  DP   ++  +E+N  P ++  S        +P   
Sbjct: 269 MRDLSIAILREVGVDTGGCNIQFAMDPKDGRLVVIEMN--PRVSRSSALASKATGYPIAK 326

Query: 276 EMAA-YAGYSFRELLLWM 292
             A    GY+  E++  +
Sbjct: 327 MAAKLAIGYTLDEIVNDI 344


>gi|255322956|ref|ZP_05364092.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter showae
           RM3277]
 gi|255299818|gb|EET79099.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter showae
           RM3277]
          Length = 443

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I    ++ +    + A AL  DK ++KQV+   GVPV P  
Sbjct: 77  DAIFPG-YGFLSENQNFVEICSHHKLKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +   +   +    I  P ++K   GG   G+ V+++++ I      + S        
Sbjct: 136 DGAVADTKAAKELAKKIGYPVILKAAAGGGGRGMRVVEREEDIEKAFWSAESEAMSAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
              Y++   L    +    +  +   V         ++          PA +  +   + 
Sbjct: 196 GTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQKLIEESPAILLDEATRER 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +AIG  G    +FL D  +   +++E+N +
Sbjct: 256 LHETAIKAAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR 293


>gi|218526188|gb|ACK86501.1| carbamoyl-phosphate synthase [Parainocellia bicolor]
          Length = 728

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       +  V+   +PD    
Sbjct: 132 SGSQAIKALKEESIQTVLVNPNIATVQTSKGLADKVYFLPLVPEYIEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +          + I +   + D+     +    +  V    +
Sbjct: 192 TFGGQTALNCGVELEKSNVFNKYGCRILGTPIESIIETEDRRIFAERINEINEKVAPSEA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG      ++ +    L   ++ H  QL+I++
Sbjct: 252 VSSIEEALNAAERLRYPVMARAAFSLGGLGSGFANNNEELVS--LAQQAFAHSTQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDAYDNCITVCNMENVHPLGIHTGESIVVAPSQTLSNREYNLLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|297588117|ref|ZP_06946761.1| pyruvate carboxylase [Finegoldia magna ATCC 53516]
 gi|297574806|gb|EFH93526.1| pyruvate carboxylase [Finegoldia magna ATCC 53516]
          Length = 1139

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 81/239 (33%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+++   + +A  K   A +  +G   E+       +   I +            DK++
Sbjct: 64  LDIEK--IIAIAKSKHCDAIHPGYGFLSENAEFARRCKENGIIFVGPDESVLHSLGDKVQ 121

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V    GV     +       +      + I  P ++K   GG   G+ +++K+  + 
Sbjct: 122 SKLVAKKAGVQTIEGVETPIRNKNEALEIANQIGYPVMVKACAGGGGRGMRIVEKESDLL 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              + + +     +   D  + +   +   +   ++ D   ++  +            K 
Sbjct: 182 NSFVSAQNESKKAFGSDDMFIEKYIRNPKHIEVQIIADNHGNILHLYERDCSIQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +  K   +++      A    + +G       +FL D      +++E+N +
Sbjct: 242 VEFAPAFSISDKTKDELHN----DAIKICKEVGYTNAGTVEFLVDEDENH-YFIEVNPR 295


>gi|332214366|ref|XP_003256308.1| PREDICTED: LOW QUALITY PROTEIN: methylcrotonoyl-CoA carboxylase
           subunit alpha, mitochondrial-like [Nomascus leucogenys]
          Length = 801

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ +Q     L                 ++    T 
Sbjct: 270 HAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESVRREAKKSFNDDAVLIEKFVDTP 329

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          PA  I  ++ K++   A  A +A+
Sbjct: 330 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKPEVRKKLGEAAVRAAKAV 389

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 390 NYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 436

Query: 294 EDASCLR 300
             A+  +
Sbjct: 437 RIAAGEK 443


>gi|289192033|ref|YP_003457974.1| MGS domain protein [Methanocaldococcus sp. FS406-22]
 gi|288938483|gb|ADC69238.1| MGS domain protein [Methanocaldococcus sp. FS406-22]
          Length = 619

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/301 (13%), Positives = 94/301 (31%), Gaps = 36/301 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A   AL++ G +   I         D D S  L    +  +   N+           
Sbjct: 108 SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEDVLNIAEREKEKGELL 166

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G    +  ++     + I  T    +  A   ++        +       +  
Sbjct: 167 GVIVQFGGQTAINLAMKLKKAGVNILGTTPENINVAEDREEFSKLLKKLNIPQAEGGTAF 226

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY- 171
                ++    I  P +++P        + ++  +  +   + ++   +    +LI+++ 
Sbjct: 227 TKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVRVSEEHPVLIDKFL 286

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            D +EL    + D    +    +   +       +S  ++T + P  +P +I   V    
Sbjct: 287 EDAVELDVDAVCDGESVLIGAIMEHIEEAG---VHSGDSATVIPPQTLPKEIIDTVIDYT 343

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G+    +        V+ LE N +   T     P ++   G    +L   
Sbjct: 344 AKLARALNIVGLLNVQYAV--KDGVVYVLEANPRASRT----VPYVSKSVGIPLAKLATK 397

Query: 292 M 292
           +
Sbjct: 398 I 398


>gi|169610798|ref|XP_001798817.1| hypothetical protein SNOG_08506 [Phaeosphaeria nodorum SN15]
 gi|160702156|gb|EAT83674.2| hypothetical protein SNOG_08506 [Phaeosphaeria nodorum SN15]
          Length = 1840

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 85/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD  + 
Sbjct: 465 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIQKERPDGIYV 524

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 525 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAN 584

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      D  +    L + ++    Q+LIE+ +
Sbjct: 585 NVEEAMRCVKDIGYPVIVRAAYALGGLGSGFANNDAELLD--LCNKAFAASPQVLIERSM 642

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 643 KGW-KEIEYEVVRDSRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 701

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 702 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 751


>gi|55742190|ref|NP_001006691.1| methylcrotonoyl-CoA carboxylase 1 (alpha) [Xenopus (Silurana)
           tropicalis]
 gi|49523253|gb|AAH75388.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Xenopus
           (Silurana) tropicalis]
          Length = 716

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ + + +      L  +       +N    L+ +   + 
Sbjct: 188 QAGKIGYPVMIKAVRGGGGKGMRIAQCEDDFLEQLESARREAKKSFNDDVMLIEKFVQNP 247

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 248 RHVEVQVFGDQHGNAVYLFERDCSVQ----RRHQKIIEEAPGPGISTEVRRKLGEAAVRA 303

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 304 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 350

Query: 290 LWMVEDASCLR 300
            W +  A+  R
Sbjct: 351 EWQLRVAAGER 361


>gi|325958521|ref|YP_004289987.1| acetyl-CoA carboxylase, biotin carboxylase [Methanobacterium sp.
           AL-21]
 gi|325329953|gb|ADZ09015.1| acetyl-CoA carboxylase, biotin carboxylase [Methanobacterium sp.
           AL-21]
          Length = 495

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 51/147 (34%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
              ++  P +IK   GG  +G+  + ++  +   +  + S    +      +V+      
Sbjct: 147 MAEIVGYPVIIKASAGGGGIGMRTVFEEDELVRAIESTKSVAELNFGDSTVFVEKYIEEP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
             +    L                ++          P   +  ++  E+   A  A ++I
Sbjct: 207 RHIEFQILADEHGNTIHVADRECSIQRRHQKLIEESPSPIMTDELRAEMGEAAIKAAKSI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +F++   + + ++LE+N +
Sbjct: 267 GYTNAGTVEFIY--SNGEFYFLEMNTR 291


>gi|323456379|gb|EGB12246.1| hypothetical protein AURANDRAFT_20552 [Aureococcus anophagefferens]
          Length = 1604

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 93/322 (28%), Gaps = 56/322 (17%)

Query: 18  SGKACASALEDAGFKVSQ-----------IDVDRS-----------------------VG 43
           SG     AL++ G +V             +D  +S                       V 
Sbjct: 501 SGAQAIKALKEEGVEVVLMNPNIASVQTNVDPAKSEAERLADPGAADRVFFLPVTPPYVE 560

Query: 44  LVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            V+A  KPD     + G      G +     +L    +    + I     + D+   K  
Sbjct: 561 SVIAKEKPDAVLISMGGQTALNCGIELDHSGVLSKHGVRVLGTSIDTVIATEDREIFKNK 620

Query: 100 VSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                 P   S+ V+           +  P + +       LG  +      +   L   
Sbjct: 621 CLEIDEPCANSLAVDSVAGALAAGEKVGYPLMCRAAFALGGLGSGICADAGEL-EALATK 679

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +       L+ +  +   E+   V+ D + +   +   ++          S+        
Sbjct: 680 ALAVSPQLLIEKSMLGWKEVEYEVVRDVADNCITVCNMENFDPLGVHTGDSIVVAPS--Q 737

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS----- 272
            +  + Y  ++  A    + +G  G     +   P S +   +E+N  P ++  S     
Sbjct: 738 TLSNEEYHMLRSAALRVVRHLGIVGECNIQYALHPTSLEYCIIEVN--PRLSRSSALASK 795

Query: 273 --IFPEMAAYA----GYSFREL 288
              +P     A    G +  EL
Sbjct: 796 ATGYPLAFVAAKLAMGVTLPEL 817



 Score = 40.2 bits (92), Expect = 0.34,   Method: Composition-based stats.
 Identities = 32/243 (13%), Positives = 75/243 (30%), Gaps = 9/243 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G   ++  V        I  TH  ++ +A    K  +    +    P    +  
Sbjct: 1130 VVVSMGGQIPQNLAVPVHEAGGTILGTHPDMIDAAEDRSKFSALMDAAGVDQPKWAELES 1189

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +   +     +  P +++P    S   + V + + S+   L  +   +    +++ Q+V 
Sbjct: 1190 HASAVAFADDVGYPVLVRPSFVLSGAAMKVCRDEASLRAHLDVAKEVSRDFPVVVSQFVR 1249

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            G       M   + D   +     +       +S   +  + P  +        +     
Sbjct: 1250 G--ARELEMDGVAKDGVVVCAQAHEHVEDAGVHSGDATLLLPPQSLSDYTLNRARDATAE 1307

Query: 234  AHQAIGCRGISRSDFLFD---PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
              + +   G     FL D   P    V  +E N    +      P ++   G  F ++  
Sbjct: 1308 VVRQLNISGPFNIQFLLDGSFPSMNDVRIIECN----LRASRSVPFVSKATGVDFADVAT 1363

Query: 291  WMV 293
             ++
Sbjct: 1364 RVL 1366


>gi|300727100|ref|ZP_07060519.1| carbamoyl-phosphate synthase, large subunit [Prevotella bryantii
           B14]
 gi|299775644|gb|EFI72235.1| carbamoyl-phosphate synthase, large subunit [Prevotella bryantii
           B14]
          Length = 1075

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   KPD    
Sbjct: 28  SGSQALKALREEGVETVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIQKEKPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELEQSGVLKKYNVKVLGTPVQAIMNTEDRELFVEQLDEINVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 CENIEQARKAAKEVGYPVIIRAAYALGGLGSGFADNEEELN--ILVEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPNSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|226311918|ref|YP_002771812.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226094866|dbj|BAH43308.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 451

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 77/248 (31%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLA---------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L           +  D      +G   E+     I     I +   
Sbjct: 47  EAYCIGPKASKESYLNIANIMSVATKVGADAIHPG-YGFLAENADFAEICAACNITFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              A     DK  +K  + + GVP  P     I      + + + I  P ++K   GG  
Sbjct: 106 DPEAIVKMGDKSTAKDTMKTAGVPTVPGTEGLIEDVADAVVTANKIGYPVMVKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V   D+ +   + Q+ +           Y++        +    +           
Sbjct: 166 RGMRVAVDDEDLEKAIRQAQNEAKTAFGNPGVYLEKFVEGPRHVEIQIMADKHGNAVYLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+     ++ +++   A  A +A+   G    +FL D    K 
Sbjct: 226 ERDCSIQRRHQKLIEEAPSPALSEELRRQMGDAAVAAAKAVSYHGAGTVEFLLDKH-GKF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|225872350|ref|YP_002753805.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium
           capsulatum ATCC 51196]
 gi|254813553|sp|C1F1S6|CARB_ACIC5 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|225793736|gb|ACO33826.1| carbamoyl-phosphate synthase, large subunit [Acidobacterium
           capsulatum ATCC 51196]
          Length = 1093

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/323 (14%), Positives = 100/323 (30%), Gaps = 44/323 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQI---------DV---DRSVGLVLAHLKPD-- 52
           G S+E +    SG     AL+  G++V  +         D    DR+    L     D  
Sbjct: 21  GQSAEFD---YSGTQACKALKAEGYEVVLVNSNPATIMTDPELADRTYIEPLTVKYLDEI 77

Query: 53  -----------------LAFNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSM 91
                                 + G    +  V+     IL+   +    + + A   + 
Sbjct: 78  LRIEAEMLAASGSNGKFAVLPTVGGQTALNLAVELADAGILDKYGVELIGAKLDAIKKAE 137

Query: 92  DKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           D++  K  ++  G+ V  S  +   R  ++    I  P +I+P       G  +    + 
Sbjct: 138 DRLLFKDAMTRIGLDVPRSALVNNIRDGLEFATKIGFPVIIRPSFTLGGSGGGIGYNREE 197

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
           +   L +    +   + LIE+ V G +     +     D   I     +     +     
Sbjct: 198 LMEILARGLDLSPVHECLIEESVLGWKEYELEVMRDLADNVIIICSIENMDPMGVHTGDS 257

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
            +          +          +  +     G S   F  +P + ++  +E+N  P ++
Sbjct: 258 ITVAPAQTLTDREYQAMRDAALLVMREIGVETGGSNVQFAVNPQTGRMTVIEMN--PRVS 315

Query: 270 PVSIFPEMAAYAGYSFRELLLWM 292
             S     +   G+   ++   +
Sbjct: 316 RSS--ALASKATGFPIAKIAAKL 336


>gi|207342168|gb|EDZ70018.1| YMR207Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 2003

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGKLVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|33596788|ref|NP_884431.1| biotin carboxylase [Bordetella parapertussis 12822]
 gi|33573489|emb|CAE37475.1| biotin carboxylase [Bordetella parapertussis]
          Length = 456

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ VI+ +  +   L ++S            Y++       
Sbjct: 149 AREVGYPLLVKAAAGGDGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        E  +   +      +             +  +  + +   A    +A+  
Sbjct: 209 HVEIQVFGDGEDVIHLGERECSIQRRHQKLLEESPSPVLSEETRQRMGEAACALARAVKY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    +F+ D  S + F++E+N +
Sbjct: 269 RGAGTLEFVMDGKSGEFFFIEMNTR 293


>gi|15669571|ref|NP_248384.1| carbamoyl-phosphate synthase subunit CarB2 [Methanocaldococcus
           jannaschii DSM 2661]
 gi|22095497|sp|Q58776|CARB2_METJA RecName: Full=Carbamoyl-phosphate synthase large chain, C-terminal
           section; AltName: Full=Carbamoyl-phosphate synthetase
           ammonia chain
 gi|1592027|gb|AAB99391.1| carbamoyl-phosphate synthase, large subunit (carB2)
           [Methanocaldococcus jannaschii DSM 2661]
          Length = 618

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/301 (13%), Positives = 95/301 (31%), Gaps = 36/301 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A   AL++ G +   I         D D S  L    +  +   N+           
Sbjct: 107 SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEEVLNIAEREKEKGELL 165

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G    +  ++     + I  T    + +A   ++        +       +  
Sbjct: 166 GVIVQFGGQTAINLAMKLKNAGVNILGTTPENINAAEDREEFSKLLKKLNIPQAEGGTAY 225

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY- 171
                ++    I  P +++P        + ++  +  +   + ++   +    +LI+++ 
Sbjct: 226 TKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVKVSEEHPVLIDKFL 285

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            D IEL    + D    +    +   +       +S  ++T + P  +P +I   V    
Sbjct: 286 EDAIELDVDAVCDGESVLIGAIMEHIEEAG---VHSGDSATVIPPQTLPKEIIDTVIDYT 342

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G+    +        V+ LE N +   T     P ++   G    +L   
Sbjct: 343 AKLARALNIVGLLNVQYAV--KDGVVYVLEANPRASRT----VPYVSKSVGIPLAKLATK 396

Query: 292 M 292
           +
Sbjct: 397 I 397


>gi|307704279|ref|ZP_07641198.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK597]
 gi|307622190|gb|EFO01208.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK597]
          Length = 455

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 87/254 (34%), Gaps = 27/254 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LH---GNFGEDGLVQAILELLEIPYT 80
           +   I   +S    L     +   +         +H   G   E+     + E + I + 
Sbjct: 47  EAVCIGPGKSTESYL---NINAVLSAAVLTEAEAIHPGFGFLSENSKFATMCEEVGIKFI 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGG 136
                   +  DK+ ++  +   GVPV P     +  +   +     I  P ++K   GG
Sbjct: 104 GPSGHVMDMMGDKINARAQMIKAGVPVIPGSDGEVHNSEEALIVAEKIGYPVMLKASAGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              GI  ++K + +            +++ +G   +         +   ++GD   +V  
Sbjct: 164 GGKGIRKVEKPEDLVSAFETASSEAKANYGNGAMYIERVIYPARHIEVQILGDEHGNVIH 223

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +            K    + +  +   +  +I       A  A +++G       +FLFD
Sbjct: 224 LGERDCSLQRNNQKVLEESPSIAIGKTLRHEIGS----AAVRAAESVGYENAGTIEFLFD 279

Query: 252 PLSRKVFWLEINVQ 265
             S K +++E+N +
Sbjct: 280 EASGKFYFMEMNTR 293


>gi|242373826|ref|ZP_04819400.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis M23864:W1]
 gi|242348380|gb|EES39982.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis M23864:W1]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  +   V         ++          P+ I  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILSEEKRQEMGNAAVR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    K +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDDKFYFMEMNTR 292


>gi|255949338|ref|XP_002565436.1| Pc22g15180 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211592453|emb|CAP98806.1| Pc22g15180 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 668

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 68/229 (29%), Gaps = 8/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  +      D                  +           G    A + DK+++K +  
Sbjct: 72  LVELAQKHSIDAVHPGYGFLSESADFAHRMWHEAGSLVIGPGWENLARTGDKLQAKHLAQ 131

Query: 102 SCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            CGVPV  ++                +  P +IK + GG   GI +++++  +   + ++
Sbjct: 132 QCGVPVLEAMSQPTTSVAEARAFATQVGFPVMIKAVDGGGGRGIRLVREEHELDNSIQRA 191

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +    + +E+          +     +      V          +          PA
Sbjct: 192 IGESPSRTVFVEKAAVDGFHHVEIQI---IGDGTGRVRHLWERDCSAQRRFQKVVECAPA 248

Query: 218 -KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 +   V   A      I  R +   +FL      + ++LE+N +
Sbjct: 249 LVRDRALVGRVIESALRMASEICYRSLGTFEFLVSEQRGEFYFLEVNPR 297


>gi|242242795|ref|ZP_04797240.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis W23144]
 gi|242233931|gb|EES36243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis W23144]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                +   I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKTAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  T   V         ++          P+ +  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDTYGNVIHLGERDCTIQRRMQKLVEEAPSPVLSEDKRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDNQFYFMEMNTR 292


>gi|193084386|gb|ACF10042.1| carbamoyl-phosphate synthase ammonia chain [uncultured marine group
           II euryarchaeote AD1000-18-D2]
          Length = 1121

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 42/325 (12%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVL 46
            V++G      G ++E + S   G     AL   G++V  I         D + +  + +
Sbjct: 10  VVILGSGPIRIGQAAEFDFS---GSQACRALRADGYEVVLINSNPATIQNDPEMADRIYI 66

Query: 47  AH------------LKPDLAFNVLHGNF--GEDGLVQAILELLEIPYTHSGILASALSMD 92
                          KPD     + G         +     L E+     G   +A+   
Sbjct: 67  EPLLPEVVKRIMELEKPDALLAGMGGQTALNIAAALAHDGSLDELGVELIGCNLTAIDEA 126

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKD 147
           + R         + +     +   +++        L   P +I+P      LG       
Sbjct: 127 EDRDLFKKVCEEIDLPVCKAIACDSIEQVLASVDELGGFPLLIRPAFTLGGLGGGTAYNT 186

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +     Q    +   Q+LIE+ + G +     +   S D   I     +     +   
Sbjct: 187 GELVEIASQGILHSAIGQVLIEESILGWQEHEYEVMRDSADNAIIVCTMENLDPMGVHTG 246

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                         D ++ ++  A    + +  RG     F  +  + +   +E+N  P 
Sbjct: 247 ESVVVAPQQTLSDRD-HQVLRDAALKLIRRLNIRGGCNVQFAVEQSTGEYRVIEVN--PR 303

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWM 292
           ++  S     +   GY    +   +
Sbjct: 304 VSRSS--ALASKATGYPIARMAALI 326



 Score = 40.2 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/172 (16%), Positives = 58/172 (33%), Gaps = 9/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +I+P       G+ ++  D+ +   + ++        L+ E   + IEL   
Sbjct: 753 AHEIGYPVLIRPSYVLGGRGMEILSNDKQLEAYMEEAYLAPDRPLLIDEYLGNAIELDVD 812

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            + D    +    +   +           ++  + P  IP  +  EV+         +G 
Sbjct: 813 AVCDGEEVLVGAVMEHLEEAGIHSG---DSTCFIPPQNIPAHVLAEVEEWTRRIGIELGI 869

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           RG     +        +  LE+N +   T    FP +A   G     +   +
Sbjct: 870 RGCFNIQYAI--RDEVLHVLEVNPRGSRT----FPFVAKATGVPLARIAARL 915


>gi|332827904|gb|EGK00626.1| carbamoyl-phosphate synthase, large subunit [Dysgonomonas gadei
           ATCC BAA-286]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  ++     D    
Sbjct: 28  SGSQALKALKEEGIYTVLINPNIATIQTSEGIADKVYFLPVTPYFVEEIIKKENVDSILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +  +   L+   +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGTELYLNGTLQKYGVEVMGTSVEAIMATEDRHLFVEKLNEIDVKTPVSQA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +++       LG  +    +      L  SS+ +  Q+L+E+
Sbjct: 148 VETMEDAIAAANRIGFPVMVRSAYALGGLGSGISNNLEEFKT--LCESSFAYSRQILVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D         +F    +            +    ++   +Q L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVASMENFDPLGIHTGESIVVAPTCSLDEKELTM-LQEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  A + IG  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 265 SKKAIRHIGIVGECNIQYAFNSETDDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|331006279|ref|ZP_08329596.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC1989]
 gi|330419900|gb|EGG94249.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC1989]
          Length = 446

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKPDLAFNVL----------------- 58
                 A ++ G K   I   VDR +  V LA     +  N                   
Sbjct: 14  ALRILRACKELGIKTVAIHSKVDRDLKHVRLADEAICIGPNASKESYLNIPAIISSMEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      ++     +         +  DK+ + + +   GVP  P 
Sbjct: 74  DSMAVHPGYGFLAENADFAEQVQKSGFIFVGPDADVIRMMGDKVCAIEAMKKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                       M     I  P +IK   GG   G+ V+  + ++   +  + S     +
Sbjct: 134 SDGELPEDKEECMRIAKRIGYPIIIKAAAGGGGRGMRVVHTESALINSIHVTKSEAGAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +   +   +   ++ D   +   +            K         +P    
Sbjct: 194 GDDTVYMEKFLQNPRHVEIQIISDGQGNTIHLGDRDCSMQRRHQKVIEEAPAPGIPD--- 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI + V      A   IG RG    +FL+       +++E+N +
Sbjct: 251 -DIREGVYASCIKACNDIGYRGAGTFEFLY--EDGGFYFIEMNTR 292


>gi|329725355|gb|EGG61838.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU144]
          Length = 452

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  T   V         ++          P+ +  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDTYGNVIHLGERDCTIQRRMQKLVEEAPSPVLSEDKRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDNQFYFMEMNTR 292


>gi|313903382|ref|ZP_07836774.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           subterraneus DSM 13965]
 gi|313466470|gb|EFR61992.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           subterraneus DSM 13965]
          Length = 1181

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 48/295 (16%), Positives = 93/295 (31%), Gaps = 30/295 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S       L   G++   +         D D +  L    L P+   NVL          
Sbjct: 618 SAVHAVRTLRALGYRAVIVNNNPETVSTDFDTADRLYFEPLTPEDVRNVLDLEQPVGVLA 677

Query: 60  ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + I  T    +  A S ++            P   +      
Sbjct: 678 QFGGQTAVNLVAPLAAAGVPILGTAPESVDVAESRERFDQLLARLGLQRPPGAAARSVAE 737

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            M +   I  P +++P        + V    + +   L  ++       + I++Y+ G+E
Sbjct: 738 AMAAAERIGYPVIVRPSYVLGGRAMQVASSPEELAAYLETAARVAGDRPVWIDRYIAGME 797

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L    + D    V    +   +       +S  +   V    +P  +  +V+       +
Sbjct: 798 LEVDAVADGETVVIPAVMRHIERAG---VHSGDSIAVVPAPGVPAAVLAQVEAATVALAR 854

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           A+  RG+    F++D   R ++ LE+N +   T     P +    G    EL   
Sbjct: 855 ALEVRGVINLQFVWD--GRTLYVLEVNPRASRT----VPFITKATGVPLAELATR 903



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/301 (10%), Positives = 82/301 (27%), Gaps = 32/301 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                          V+   +PD    
Sbjct: 55  SGTQACRALKEEGLEVVLLNSNPATVMTDPGTADRIYVEPLTAEFAEAVIRRERPDALLP 114

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G                    +++  T    +  A   +  +   +     VP    
Sbjct: 115 TLGGQVGLNLAMELVRAGVLERYGVQLLGTPPEAIQRAEDREAFKELMLAIGEPVPQSTI 174

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P + +P       G  + + +  +   + +  + +   Q+L+E+
Sbjct: 175 VRSYEEALAFARRVGFPVIARPGYTLGGTGGGIARNEVELAALVDRGLAASPIGQVLLEE 234

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                  + + ++  
Sbjct: 235 SLLGWKEIEFEVIRDGAGNAIAICSMENVDPVGVHTGDSIVVAPALTLTDRQL-QRLRSA 293

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AIG  G         P   +   +E+N  P ++  S     +   GY   ++  
Sbjct: 294 SLRIVGAIGVEGGCNVQLALRPDGAEYRVIEVN--PRVSRSS--ALASKATGYPIAKVAA 349

Query: 291 W 291
            
Sbjct: 350 R 350


>gi|317128423|ref|YP_004094705.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cellulosilyticus DSM 2522]
 gi|315473371|gb|ADU29974.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           cellulosilyticus DSM 2522]
          Length = 453

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V K + S+   +  +      +      Y++       
Sbjct: 148 AEEIGYPVIIKATAGGGGKGIRVAKDEASLRKGISITQEEAKANFGNPGVYLEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +      V         ++          P+    +  ++     +  A QA+ 
Sbjct: 208 HVEIQVMADKHGNVIHLGERDCTIQRRLQKLVEETPSPALTEEVRKEMGEASVRAAQAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD  + K +++E+N +
Sbjct: 268 YVGAGTIEFIFDHKNNKFYFMEMNTR 293


>gi|261414967|ref|YP_003248650.1| phosphoribosylglycinamide formyltransferase 2 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261371423|gb|ACX74168.1| phosphoribosylglycinamide formyltransferase 2 [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302327717|gb|ADL26918.1| phosphoribosylglycinamide formyltransferase 2 [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 394

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 87/315 (27%), Gaps = 42/315 (13%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRSV 42
           VL  G S E    L  GK     +   G +V  +D                      + +
Sbjct: 15  VLFCG-SGE----L--GKEVIIEMMRLGVEVIAVDRYANAPGMQVAHRSYVINMLDGKEL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +     +  +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEKEKPDYIVPEVEAIATDTLVELEKEGYNVIPTAKATKLTMNREGIRRLAAEELGL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   I  P V+KP+   S  G  VIK +  I       +    
Sbjct: 128 KT-SPYRFADNYEDFKAAVKEIGIPCVVKPVMSSSGHGQSVIKTEADIEN---SWNISQT 183

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G +      V              L V  +            +          P  +  +
Sbjct: 184 GGRTGAASRVIVEGFVPFDYEITLLTVRHVGGTSFLEPIGHHQVGGDYQESWQPQPMKPE 243

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIF 274
           + ++ + +A     A+G RGI   +        +V + E++ +P   GM       +S F
Sbjct: 244 LLEQAKVIAKKVTDALGGRGIFGVELFVCK--DEVLFSEVSPRPHDTGMVTLISQDLSEF 301

Query: 275 PEMAAYA-GYSFREL 288
              A    G     +
Sbjct: 302 ALHARAILGLPIPNI 316


>gi|281421185|ref|ZP_06252184.1| carbamoyl-phosphate synthase, large subunit [Prevotella copri DSM
           18205]
 gi|281404720|gb|EFB35400.1| carbamoyl-phosphate synthase, large subunit [Prevotella copri DSM
           18205]
          Length = 1077

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  ++   +PD    
Sbjct: 28  SGSQALKALREEGISSVLINPNVATIQTSEGIADKVYFLPVTPFFVTEIIKKERPDGIML 87

Query: 57  VLHGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G  G     +  +  +L+   +    + + A   + D+    + ++   + V  S  
Sbjct: 88  AWGGQTGLNVGTELYLNGVLKEYGVDVLGTSVEAIMNTEDRDLFVKELNKVDLKVPVSHA 147

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG  V K ++        + ++    Q+L+E+
Sbjct: 148 CENMEEAVAAARNIGYPIMIRSAYALGGLGSGVCKTEEEFKEIAESAFTFAP--QVLVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q +
Sbjct: 206 SLKGW-KEIEFECIRDANDRCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQDI 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +   G     + F+  +     +EIN +  ++  S     +   GY    +  
Sbjct: 265 AVKCVRHLNIVGECNIQYAFNAETNDYRIIEINAR--LSRSS--ALASKATGYPLAFVAA 320

Query: 291 WM 292
            +
Sbjct: 321 KI 322


>gi|254475342|ref|ZP_05088728.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria sp. R11]
 gi|214029585|gb|EEB70420.1| acetyl-CoA carboxylase, biotin carboxylase [Ruegeria sp. R11]
          Length = 450

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRIMGDKITAKDTMKELGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V K    +    + + +     + + +
Sbjct: 137 GVPDLAAAKKIGEEIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQ----RRHQKVFEEAPGPCITEEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 253 ARIGKICADAVAKINYIGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|86450107|gb|ABC96242.1| carbamoylphosphate synthetase [Hoplopeza sp. JKM-2006]
          Length = 1276

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELERTGVFKKYNVRVMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSIREALDAAEKLGYPVMARAAFSLGGLGSGFANNIEELE--VLAQQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|34398185|gb|AAQ67182.1| CAD [Leptopeza sp. NCSU-99071981]
          Length = 1289

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 364 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGILL 423

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+      ++     V    +
Sbjct: 424 TFGGQTALNCGVELERAGIFKKYNVRIMGTPIQSVIETEDRKIFADRIAEIGEKVAPSEA 483

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 484 VYSIREALEAADKLGYPVMARAAFSLGGLGSGFANNKEELE--VLAQHALAHSNQLIIDK 541

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 542 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 600

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 601 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 656

Query: 291 WM 292
            +
Sbjct: 657 KL 658


>gi|86450139|gb|ABC96258.1| carbamoylphosphate synthetase [Proagomyia sp. JKM-2006]
          Length = 1297

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEQVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG      ++ +   +L   +  H +QL+I++
Sbjct: 488 VYSVAEALEAAKTLGFPVMARAAFSLGGLGSGFANNEEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTC 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|86360235|ref|YP_472124.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
 gi|86284337|gb|ABC93397.1| acetyl-CoA carboxylase, biotin carboxylase protein [Rhizobium etli
           CFN 42]
          Length = 464

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+ K   +   +  +             Y++       
Sbjct: 162 ALEIGYPVIIKASGGGGGRGMRVVPKADQLHEAIALTREEARKAFGSPSLYMEKFLQHPR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  I  DI + V      A + IG
Sbjct: 222 HIEIQVLCDDYGNAVWLGHRDCSMQRRHQKVVEEAPAPGIAPDIIRPVGMACVEACRQIG 281

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+   +   +++E+N +
Sbjct: 282 YRGVGTFEFLY--ENGAFYFIEMNTR 305


>gi|50293221|ref|XP_449022.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528335|emb|CAG61992.1| unnamed protein product [Candida glabrata]
          Length = 2211

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 458 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVILHERPDAIYV 517

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 518 TFGGQTALSVGIEMKDEFESLGVKVLGTPIDTIITTEDRELFANAIDEIDEKCAKSQAAN 577

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        I  P +++       LG      +Q +    L + ++    Q+L+E+ +
Sbjct: 578 SVEEALAAVKDIGFPVIVRAAYALGGLGSGFANNEQELID--LCNVAFASSPQVLVERSM 635

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 636 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 694

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 695 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 744



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 87/267 (32%), Gaps = 11/267 (4%)

Query: 27   EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
            +   F+   I+++R + +  A     +  + + G    +  +    E ++I  T   ++ 
Sbjct: 1032 DRLYFET--INLERVLDIYEAEASNGVVVS-MGGQTSNNIAMSLHRENVKILGTSPDMID 1088

Query: 87   SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            SA +  K            P    +       D    +  P +++P    S   +  +  
Sbjct: 1089 SAENRYKFSRMLDQIGVDQPAWKELTSMDEAEDFAEKVGYPVLVRPSYVLSGAAMNTVYS 1148

Query: 147  DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +   L Q+   +    ++I +Y++  +         + ++    V +    +     
Sbjct: 1149 KNDLESYLNQAVEVSRDYPVVITKYIENAKEIEMDAVARNGELVMHVVSEHVENAGVHSG 1208

Query: 207  SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
             +       P  +  +    +        +A+   G     F+      ++  +E NV+ 
Sbjct: 1209 DATLIVP--PQDLAPETVDRIVVATAKIGKALKITGPYNIQFI--AKDNEIKVIECNVR- 1263

Query: 267  GMTPVSIFPEMAAYAGYSFRELLLWMV 293
                 S FP ++   G +  EL    +
Sbjct: 1264 --ASRS-FPFISKVVGVNLIELATKAI 1287


>gi|88803591|ref|ZP_01119116.1| pyruvate carboxylase [Polaribacter irgensii 23-P]
 gi|88780603|gb|EAR11783.1| pyruvate carboxylase [Polaribacter irgensii 23-P]
          Length = 1150

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P ++K   GG   G+ VI+K   +     +S             +++   +   
Sbjct: 150 AAIIGYPVMLKAASGGGGRGMRVIRKASELTGAFHESKREALNAFGDDTVFLEKYVMNPK 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          P+     +I + +   A    +A+ 
Sbjct: 210 HIEIQIVADNYGDTVHLYERDCSVQRRYQKVIEFAPSFDLKQEIKEALYTYAINICKAVA 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              I   +FL D     ++++E+N +
Sbjct: 270 YNNIGTVEFLVD-DDDAIYFIEVNPR 294


>gi|325192220|emb|CCA26674.1| unnamed protein product [Albugo laibachii Nc14]
          Length = 1517

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/306 (14%), Positives = 89/306 (29%), Gaps = 36/306 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G  V  ++ +                      +V  V+   KPD    
Sbjct: 446 SGSQAIKALREEGVHVILVNPNIATVQTSKGLADKVYFVPVRASTVLEVIKKEKPDGILV 505

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G                    + +  T    + +    +K   K       + +   
Sbjct: 506 SMGGQTALNVGIELYQNGDLDRHNVIVMGTQIPAIINTEDREKFSEKLAEIGETIALSRP 565

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
                  + +  +I  P +++       LG      DQ +       L  S S +   Q+
Sbjct: 566 ARSVEEAIAAAKIIGYPVLVRSAFALGGLGSGFASNDQELTKLATKALHGSGSKSGVKQI 625

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LI+Q + G                 I V   + +     ++  +        +  D Y +
Sbjct: 626 LIDQDLRGW-KEVEYEVVRDAKDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSNDEYFK 684

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A    + +   G     +  DP S +   +E+N +  ++  S     +   GY   
Sbjct: 685 LRATAQKVVRHLEIVGECNIQYALDPHSERYCIIEVNAR--LSRSS--ALASKATGYPLA 740

Query: 287 ELLLWM 292
            +   +
Sbjct: 741 YVATKI 746


>gi|319902054|ref|YP_004161782.1| biotin carboxylase [Bacteroides helcogenes P 36-108]
 gi|319417085|gb|ADV44196.1| biotin carboxylase [Bacteroides helcogenes P 36-108]
          Length = 503

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/231 (16%), Positives = 77/231 (33%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +  H   D      +G   E+       +   + +            DK+ ++Q 
Sbjct: 64  EKVISIAKHCNADAIHPG-YGFLSENAEFARRCKEEGVIFIGPAAETMEAMGDKIAARQR 122

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + GVPV P       + +    I      P ++K   GG   G+ +I  +  +     
Sbjct: 123 MIAAGVPVVPGTEQPLKSAEEAIRICNDIGYPVMLKASMGGGGKGMRLIHHEDEVVEAYN 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S +         Y++        +    L      V         ++  +       
Sbjct: 183 TARSESMSSFGDDTVYLEKFVEEPHHIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEES 242

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     ++ KE+   A  A +A+   G    +FL D  +R  ++LE+N +
Sbjct: 243 PSPFLTPELRKEMGEKAVAAAKAVNYLGAGTIEFLVD-KNRNFYFLEMNTR 292


>gi|150951195|ref|XP_001387473.2| urea amidolyase [Scheffersomyces stipitis CBS 6054]
 gi|149388396|gb|EAZ63450.2| urea amidolyase [Pichia stipitis CBS 6054]
          Length = 1822

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 45/144 (31%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 771 AAKLEYPVMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKSYFGDAGVFLERFVEDAR 830

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +            L+  +       PA    +   ++++  A     ++ 
Sbjct: 831 HVEVQMFGDGKGRAIALGERDCSLQRRNQKVIEETPAPNLPEATRQKMRDAAESLGASMN 890

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
            +     +F++D    + ++LE+N
Sbjct: 891 YKCAGTVEFIYDEKRDEFYFLEVN 914


>gi|319642211|ref|ZP_07996871.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           3_1_40A]
 gi|317386197|gb|EFV67116.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           3_1_40A]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|306844762|ref|ZP_07477347.1| pyruvate carboxylase [Brucella sp. BO1]
 gi|306274934|gb|EFM56704.1| pyruvate carboxylase [Brucella sp. BO1]
          Length = 1158

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|254719771|ref|ZP_05181582.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|265984791|ref|ZP_06097526.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|306839467|ref|ZP_07472275.1| pyruvate carboxylase [Brucella sp. NF 2653]
 gi|264663383|gb|EEZ33644.1| pyruvate carboxylase [Brucella sp. 83/13]
 gi|306405412|gb|EFM61683.1| pyruvate carboxylase [Brucella sp. NF 2653]
          Length = 1163

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|254694430|ref|ZP_05156258.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
 gi|261214744|ref|ZP_05929025.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
 gi|260916351|gb|EEX83212.1| pyruvate carboxylase [Brucella abortus bv. 3 str. Tulya]
          Length = 1158

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 ATQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|237707993|ref|ZP_04538474.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|265754221|ref|ZP_06089410.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_33FAA]
 gi|229457979|gb|EEO63700.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           9_1_42FAA]
 gi|263234930|gb|EEZ20485.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_33FAA]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|222081198|ref|YP_002540561.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221725877|gb|ACM28966.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 457

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+    ++   +  +           E Y++       
Sbjct: 157 ARDIGYPVIVKAAGGGGGRGMRVVHDASALEDAVSVTREEARRAFGTPELYLEKFLEHPR 216

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                 +          PA  +P++I   V      A + IG
Sbjct: 217 HVEIQVLCDNHGNAVWLGHRDCSTQRRHQKVVEEAPAPGMPVEIAAAVGERCVEACRRIG 276

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+   +   +++E+N +
Sbjct: 277 YRGVGTFEFLY--ENGAFYFIEMNTR 300


>gi|212690551|ref|ZP_03298679.1| hypothetical protein BACDOR_00033 [Bacteroides dorei DSM 17855]
 gi|212666900|gb|EEB27472.1| hypothetical protein BACDOR_00033 [Bacteroides dorei DSM 17855]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|150003003|ref|YP_001297747.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           vulgatus ATCC 8482]
 gi|294775638|ref|ZP_06741146.1| carbamoyl-phosphate synthase, large subunit [Bacteroides vulgatus
           PC510]
 gi|149931427|gb|ABR38125.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           vulgatus ATCC 8482]
 gi|294450482|gb|EFG18974.1| carbamoyl-phosphate synthase, large subunit [Bacteroides vulgatus
           PC510]
          Length = 1073

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|86450113|gb|ABC96245.1| carbamoylphosphate synthetase [Trichopeza longicornis]
          Length = 1278

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V      V    +
Sbjct: 430 TFGGQTALNCGVELDRAGVFAKYNVRIMGTPIQSIIDTEDRKIFSERVGQIGEQVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 490 VYSVAEALEAAENLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVIGECNIQYALNPDSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|12039052|gb|AAF18638.2|AC006228_9 F5J5.19 [Arabidopsis thaliana]
          Length = 2257

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 175 PTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 234

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 235 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSV 294

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    +++   G +  ++L+   + + ++
Sbjct: 295 QRRHQKIIEEGPITVAPP----ETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYF 350

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 351 LELNPR 356


>gi|83648646|ref|YP_437081.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
 gi|83636689|gb|ABC32656.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
          Length = 446

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G     +   VDR +  V LA            D   N+          
Sbjct: 14  ALRILRACKELGINTVAVHSSVDRDLMHVRLADESVCIGPNSPTDSYLNIPAIISAAEVT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ + Q +   GVP  P 
Sbjct: 74  DSVGIHPGYGFLAENADFAEQVEKSGFVFIGPKPDTIRLMGNKVSAIQAMRKAGVPTVPG 133

Query: 111 ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V+  + ++   +  + S      
Sbjct: 134 SDGPITEDKERTLEVARKIGYPVIIKAASGGGGRGMQVVNSEAALLNAIQLTQSEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +  V         L+          P   +  +  
Sbjct: 194 GDPTVYLEKFLDRPRHIEVQVLADGQGNVIHLGDRDCSLQRRHQKVLEEAPAPDVDPEAR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+     + +++E+N +
Sbjct: 254 AATLNSCVQACLDIGYRGAGTFEFLY--QDGRFYFIEMNTR 292


>gi|73669099|ref|YP_305114.1| pyruvate carboxylase subunit A [Methanosarcina barkeri str. Fusaro]
 gi|12018158|gb|AAG45427.1|AF317651_4 pyruvate carboxylase ATP-binding subunit PYCA [Methanosarcina
           barkeri]
 gi|72396261|gb|AAZ70534.1| pyruvate carboxylase subunit A [Methanosarcina barkeri str. Fusaro]
          Length = 493

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG  +G+ V+         L  +             +++       
Sbjct: 148 AEEIGYPVLIKASAGGGGIGMKVVNSSDEFATALSSTRQMAGSAFGDSSVFIEKYVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   +  ++  ++   A    + IG
Sbjct: 208 HIEIQILADGYGNTIYLSDRECSIQRRHQKLIEEAPSPIMTPELRAKMGEAAVRVAKTIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL+       ++LE+N +
Sbjct: 268 YVNAGTVEFLY--SKGNFYFLEVNTR 291


>gi|79358114|ref|NP_174849.2| ACC1 (ACETYL-COENZYME A CARBOXYLASE 1); acetyl-CoA carboxylase
           [Arabidopsis thaliana]
 gi|1100253|dbj|BAA07012.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332193728|gb|AEE31849.1| acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
 gi|332193729|gb|AEE31850.1| acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
          Length = 2254

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 175 PTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 234

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 235 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSV 294

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    +++   G +  ++L+   + + ++
Sbjct: 295 QRRHQKIIEEGPITVAPP----ETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYF 350

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 351 LELNPR 356


>gi|89068968|ref|ZP_01156350.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
 gi|89045549|gb|EAR51613.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
          Length = 448

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 70/217 (32%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQVVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            ++      +    I  P +IK   GG   G+ V +    +      + S         E
Sbjct: 137 GVVDLAAAEEIAADIGYPVIIKATAGGGGRGMKVAQSAADLKHAFQNARSEAKAAFGNDE 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++    T   +                     L+          P   I  +    + 
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGRGGAVHLAERDCSLQRRHQKVLEEAPGPCISEEERARIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A   IG  G    +FL+   + + +++E+N +
Sbjct: 257 KVCADAVAKIGYSGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|84499677|ref|ZP_00997965.1| carbamoyl-phosphate synthase large subunit [Oceanicola batsensis
           HTCC2597]
 gi|84392821|gb|EAQ05032.1| carbamoyl-phosphate synthase large subunit [Oceanicola batsensis
           HTCC2597]
          Length = 1092

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 93/314 (29%), Gaps = 43/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVARIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE  ++    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALADMGVLEKFKVELIGANREAIEMAEDRRLFREAMDRIGLENPKATI 148

Query: 113 VNRFTMDSQHLIS--------------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
           V     + Q  IS               P +I+P       G  V               
Sbjct: 149 VTAPKKNGQFDISAGVAEAMNALEHIGLPAIIRPAFTLGGTGGGVAYNRDDYEYYCRSGM 208

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +   Q+L+++ + G +     +     D   I     +     +      +       
Sbjct: 209 EASPVAQILVDESLLGWKEFEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALTL 268

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
              +          +  +     G S   +  +P   ++  +E+N  P ++  S     +
Sbjct: 269 TDKEYQVMRNGSIAVLREIGVETGGSNVQWAINPEDGRMVVIEMN--PRVSRSS--ALAS 324

Query: 279 AYAGYSFRELLLWM 292
              G+   ++   +
Sbjct: 325 KATGFPIAKIAAKL 338



 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 50/317 (15%), Positives = 104/317 (32%), Gaps = 51/317 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL +AG++   +         D D S 
Sbjct: 576 VVILGGGPN-------RIGQGIEFDYCCCHACFALTEAGYETIMVNCNPETVSTDYDTSD 628

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 629 RLYFEPLTFEHVMEILRVEQSRGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 688

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+   +    + + +      +    I  P VI+P        + +++ 
Sbjct: 689 LAEDRERFQDLVNRLELKQPRNGIAHSDAEALEIAEGIGFPLVIRPSYVLGGRAMEIVRD 748

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +L++ Y    +EL    + D +       +   +       
Sbjct: 749 MDGLKRYIRDAVVVSGDSPVLLDSYLSSAVELDVDALCDGTNVHVAGIMQHIEEAG---V 805

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +P DI  EV+R      + +   G+    +        V+ +E+N +
Sbjct: 806 HSGDSACSLPPHSLPGDIIDEVKRQTEALARELNVVGLMNVQYAV--KDGTVYLIEVNPR 863

Query: 266 PGMTPVSIFPEMAAYAG 282
              T     P +A    
Sbjct: 864 ASRT----VPFVAKAVN 876


>gi|115522662|ref|YP_779573.1| pyruvate carboxylase [Rhodopseudomonas palustris BisA53]
 gi|115516609|gb|ABJ04593.1| pyruvate carboxylase [Rhodopseudomonas palustris BisA53]
          Length = 1149

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI+ +  +  D   +           E Y++ +     
Sbjct: 151 ATSIGYPVMLKASWGGGGRGMRVIRDEAQLLRDAPAAKREAKAAFGKDEVYLEKLVERAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++          PA    +    E+   A    ++  
Sbjct: 211 HVEVQILGDRHGNVVHLFERDCSVQRRHQKVVERAPAPYLSEAERAELCGYAVAIAKSTN 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + K +++E+N +
Sbjct: 271 YLAAGTVEFLMDVDTGKFYFIEVNPR 296


>gi|328774365|gb|EGF84402.1| hypothetical protein BATDEDRAFT_18673 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 2273

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 17/234 (7%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGL-----VQAILELLEIPYTHSGILASALSMDKMRS 96
           +   LA L P + F    G            + + +                +++D  +S
Sbjct: 154 LVEKLALLNPAVVFI---GPPASAMRSLGDKIASTIVAQSANVPCVHWSGDGITIDTEQS 210

Query: 97  KQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
               +   VP               +     I  P +IK  +GG   GI ++  + +   
Sbjct: 211 TGKTACATVPEDKYHQATTHDVNEGLMHAKRIGFPVMIKASEGGGGKGIRLVDDEVAFAS 270

Query: 153 DLLQSSSWNHGDQLL-IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +Q      G  +  +    +   L   ++ DA  +   +            K      
Sbjct: 271 SFVQVQREVPGSPIFIMCVVSNARHLEVQLLADAYGNAIALFGRDCSVQRRHQKIIEEAP 330

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +I   ++R A    + +G       ++L++P ++K ++LE+N +
Sbjct: 331 ISVAPP----EILSHMERSAVRLAKLVGYVSAGTVEYLYEPHTQKYYFLELNPR 380


>gi|109043037|ref|XP_001096717.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Macaca mulatta]
          Length = 797

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 60/187 (32%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ +Q     L  +              ++    T 
Sbjct: 266 HAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAVLIEKFVDTP 325

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          PA  I  ++ K++   A  A +A+
Sbjct: 326 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKPEVRKKLGEAAVRAAKAV 385

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 386 NYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 432

Query: 294 EDASCLR 300
             A+  +
Sbjct: 433 RIAAGEK 439


>gi|2243026|dbj|BAA21088.1| carbamyl phosphate synthase [Trypanosoma cruzi]
 gi|4210453|dbj|BAA74521.1| GATase-CPSase [Trypanosoma cruzi]
          Length = 1524

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 98/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL + G +   ++ +                      +V  V+   +PD    
Sbjct: 395 SGSQCLKALSEEGIETVLVNPNIATVQTDDEMADQIYFVPITAEAVERVIEKERPDGIML 454

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     IL+   +    + I    ++ D+   +  +   +  V    +
Sbjct: 455 AWGGQTALNCGLEMDRLGILKKYNVQVLGTPISTITVTEDRDLFRNALLQINEHVAKSLA 514

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  +I  P +++        G  ++  ++ +   +  + +     Q+L+E+
Sbjct: 515 VTSIEEAVGASKVIGFPLMLRAAYCLGGQGSGIVYNEEELRHKVGVALAV--SPQVLLEE 572

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G            +    I V   + +     ++  +        +  D Y  ++  
Sbjct: 573 SVAGW-KEVEYEVVRDIYDNCITVCNMENFDPMGTHTGESIVVAPLQTLTSDEYHMLRSA 631

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    +  
Sbjct: 632 SIKIIRHLGIVGECNIQYGLDPTSHRYVVIEVNAR--LSRSS--ALASKATGYPLALVAA 687

Query: 291 WM 292
            +
Sbjct: 688 KI 689



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 89/289 (30%), Gaps = 28/289 (9%)

Query: 22   CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
             A  L   G KV  I+ +                      +V  +L   +       L G
Sbjct: 949  VARELRRLGKKVILINYNPETVSTDYDECDRLYFEEVSEETVLDILLKERIQGVVISLGG 1008

Query: 61   NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               ++  ++     L I  T    +  A +  K            P      +     + 
Sbjct: 1009 QIVQNMALRLKQHGLPILGTDPVNVDKAENRHKFSKMCDELGVLQPEWILSTIVEQVHEF 1068

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
               +  P +++P    S   + VI     I   L +++  +    +++ +Y +G      
Sbjct: 1069 CKQVGFPTLVRPSYVLSGSAMAVIASAADINRYLEEAALVSGEHPVVVSKYYEGAMEYDV 1128

Query: 181  VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
                 +     +     +       +S   +  + P     ++ K +     L  + +  
Sbjct: 1129 --DIVAHHGRVLCYAICEHVENAGVHSGDATMFLPPQNTEKEVMKRIYNTTALIAEELDV 1186

Query: 241  RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             G     FLF    +++  +E N++   +  S  P ++   G SF  ++
Sbjct: 1187 VGPMNIQFLFT-KDKQLRVIEANIR---SSRS-VPFVSKTLGISFPAVM 1230


>gi|27364636|ref|NP_760164.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           vulnificus CMCP6]
 gi|37681320|ref|NP_935929.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           vulnificus YJ016]
 gi|27360781|gb|AAO09691.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio vulnificus
           CMCP6]
 gi|37200071|dbj|BAC95900.1| biotin carboxylase [Vibrio vulnificus YJ016]
          Length = 448

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++K+  +   +  + +      
Sbjct: 134 SDGPLDNDEVKNRAHAKRIGYPVIIKASGGGGGRGMRVVRKEADLVQAIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|187923242|ref|YP_001894884.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phytofirmans PsJN]
 gi|187714436|gb|ACD15660.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           phytofirmans PsJN]
          Length = 404

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L E+  T      +       R                       
Sbjct: 87  EAIATDALAAIESDGLAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +        +    +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYALAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    +             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPASGEVSTYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|91201194|emb|CAJ74254.1| strongly similar to carbamoyl-phosphate synthase
           (glutamine-hydrolyzing) [Candidatus Kuenenia
           stuttgartiensis]
          Length = 1091

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG     AL + G+ V  +         D + +    +               +P     
Sbjct: 29  SGTQACHALREEGYTVILVNSNPATIMTDPEVADKTYIEPITTEIITKIIEKERPQAILP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +  V    + +L+   +    + + A  ++ D+ + K  +   GV V  S+ 
Sbjct: 89  TLGGQTGLNAAVSLAEKGVLDKFNVELIGAKLKAIKMAEDRSQFKAAMGRIGVQVPESVY 148

Query: 113 VNRFTMDSQHL--ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           VN      + +  I  P +I+        G       +     +      +   ++L+E+
Sbjct: 149 VNSLDTALKIIDAIGFPAIIRASFTLGGSGGSTAYNIEEYKEYITTGLETSPIHEVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +         ++  K     
Sbjct: 209 SVLGWKEYELEVMRDLKDNVVIICSIENFDPMGVHTGDSITVAPAQTLTDMEYQKMRDAA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 VRIIREIGVETGGSNIQFAVNPENGEMLAIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326



 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/291 (13%), Positives = 94/291 (32%), Gaps = 31/291 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL++ G++   +         D D              V  ++   KP+       G   
Sbjct: 606 ALKELGYETIMVNCNPETVSTDYDTSDRLYFEPLTMEDVLEIIHKEKPEGVIVQFGGQTP 665

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               V    E ++I  T    +  A   ++            P                 
Sbjct: 666 LKLAVPLEKEGVKILGTSPENIDVAEDRERFALLMNRLGLKQPENGCANSAEDAKMIAKR 725

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P +++P        + ++  +Q +   +  +   +H   +LI+ +  D IE+    +
Sbjct: 726 IGYPVLLRPSYVLGGSAMRIVYDEQGLEHYISHAVEVSHEHPVLIDSFLQDAIEIDVDAI 785

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D         +   +       +S  ++  + P  +  +I +E+++   +   A+   G
Sbjct: 786 SDGEEVFIGGVMEHIEEAG---VHSGDSACSLPPYSVNNEIIEELKKETRIIALALNVIG 842

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           +    +      + ++ LE+N +   T     P ++   G    ++   ++
Sbjct: 843 LINIQYAV--KDKVIYVLEVNPRASRT----IPFVSKAIGVPMAKIAAKVI 887


>gi|57239259|ref|YP_180395.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579222|ref|YP_197434.1| propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161338|emb|CAH58261.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Ehrlichia ruminantium str. Welgevonden]
 gi|58417848|emb|CAI27052.1| Propionyl-CoA carboxylase alpha chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 660

 Score = 51.4 bits (121), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/247 (13%), Positives = 82/247 (33%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L+  K      DL    +H   G   E+      L    I +    
Sbjct: 51  EAVNIGPAPVGQSYLSIEKICEIARDLGVQAVHPGYGFLSENANFPEKLNDYGIEFIGPS 110

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK++  S  V + P  +    + +    I+     P +IK   GG   
Sbjct: 111 ADSIRMMADKITSKKIAESAQVNIIPGYMGIVDSSEQAEKIAESIGFPVMIKATAGGGGK 170

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++K    I      +++    +      +++        +    L      +     
Sbjct: 171 GMRIVKSRDEINQAFTSATNEASKNFRDGRIFIEKYIELPRHIEIQILADKHGNIVCLGE 230

Query: 200 YSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+    +   +++ +      + +G       +F+ D  +++ +
Sbjct: 231 RECSIQRHNQKVIEETPSPFLDERTRRKMYKQCISLARKVGYYSAGTIEFVVD-QNKQFY 289

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 290 FLEMNTR 296


>gi|322377050|ref|ZP_08051542.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M334]
 gi|321281763|gb|EFX58771.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M334]
          Length = 455

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K   +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S K +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNTR 293


>gi|126650982|ref|ZP_01723193.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
 gi|126592183|gb|EAZ86232.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
          Length = 452

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ +++  + +      +             Y++       
Sbjct: 148 AERLGYPIMLKASAGGGGIGMQLVENAEELVKAFEGNQKRAQSFFGDGTMYMERFIANPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    +   +  V         ++  +       P   I  +   ++   +  A + IG
Sbjct: 208 HVEVQIIADHQGNVVPLFERECSIQRRNQKVVEEAPSPFISQETRDKMLEASVKAAKHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L D   +  ++LE+N +
Sbjct: 268 YVNAGTIEYLVDE-DQNFYFLEMNTR 292


>gi|115375715|ref|ZP_01462969.1| hypothetical protein STIAU_3834 [Stigmatella aurantiaca DW4/3-1]
 gi|310825148|ref|YP_003957506.1| hypothetical protein STAUR_7924 [Stigmatella aurantiaca DW4/3-1]
 gi|115367278|gb|EAU66259.1| hypothetical protein STIAU_3834 [Stigmatella aurantiaca DW4/3-1]
 gi|309398220|gb|ADO75679.1| uncharacterized protein [Stigmatella aurantiaca DW4/3-1]
          Length = 332

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 51/240 (21%), Positives = 82/240 (34%), Gaps = 14/240 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDG---LVQAILELLEIPYTHSGILASALSMDKMRSK 97
            V   LA    D   N+  G   ED     V   LE L + YT +     A S ++++  
Sbjct: 47  EVLEQLAAEGFDAFINLCDGAPDEDIAGVEVIHHLERLGLAYTGADTRFYAASREELKQA 106

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--KDQSIPLDLL 155
            +    G P             +   +  P ++KP  G +S+GI        +   LD  
Sbjct: 107 WLDHGIGTPAHHFATDLASVEQAAGKLRFPMLVKPSSGYASVGIERGSKVSTREALLDRA 166

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGV-------MGDASLDVTEIAVPKSDFYSYELKYSS 208
             +    G  LL+E+++ G E T  V                EI  P  + + +      
Sbjct: 167 GRTLSQFGG-LLLEEFIAGREFTVLVAEPRRGERVPWVHPPVEIHFPPGETFKHFDLKWM 225

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
             +       +   +   +  +A     A+  RG  R D   D     +F L+ N  PGM
Sbjct: 226 NYNAMHTRPVLDAGLVARLSEMAQQTFLAVNARGYCRCDIRMDE-DGHLFMLDCNANPGM 284


>gi|27468125|ref|NP_764762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis ATCC 12228]
 gi|57867016|ref|YP_188664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis RP62A]
 gi|251810939|ref|ZP_04825412.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|282876052|ref|ZP_06284919.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis SK135]
 gi|293366517|ref|ZP_06613194.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|27315671|gb|AAO04806.1|AE016748_40 acetyl-CoA carboxylase (biotin carboxylase subunit) accC
           [Staphylococcus epidermidis ATCC 12228]
 gi|57637674|gb|AAW54462.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           epidermidis RP62A]
 gi|251805619|gb|EES58276.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           epidermidis BCM-HMP0060]
 gi|281295077|gb|EFA87604.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis SK135]
 gi|291319286|gb|EFE59655.1| acetyl-CoA carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|329735210|gb|EGG71502.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU045]
 gi|329737176|gb|EGG73430.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           epidermidis VCU028]
          Length = 452

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKIAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  T   V         ++          P+ +  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDTYGNVIHLGERDCTIQRRMQKLVEEAPSPVLSEDKRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDNQFYFMEMNTR 292


>gi|330808407|ref|YP_004352869.1| biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376515|gb|AEA67865.1| Putative biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 656

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 71/221 (32%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+       E   I +      A  L   K R+K  +   GVP       
Sbjct: 79  AIHPGYGFLSENAGFAKACEAASIVFIGPSPEAIDLMGSKRRAKIAMIEAGVPCIAGYQG 138

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
               +         I  P +IK   GG   G+ ++++ + +   L  +       +   +
Sbjct: 139 AAQDDDTLQREAGRIGYPLMIKASAGGGGRGMRLVQRAEDLLEQLRSARSEALHGFGSDE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            +L +  +D   +   + GD    +  +            +             +  D+ 
Sbjct: 199 LILEQALIDPRHVEVQIFGDHHGQLIHLGERDCSIQ----RRHQKVIEEAPCPVMTADLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +   A    +A+   G    +FL      + ++LE+N +
Sbjct: 255 QAMGDAALKVGRAVKYVGAGTVEFLL-AADGRFYFLEMNTR 294


>gi|313681258|ref|YP_004058996.1| urea carboxylase [Sulfuricurvum kujiense DSM 16994]
 gi|313154118|gb|ADR32796.1| urea carboxylase [Sulfuricurvum kujiense DSM 16994]
          Length = 1199

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 16/182 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +          +  +      Y++    +  
Sbjct: 147 AQEIGYPVMLKSTAGGGGIGMQLCYGAEDLENGFESVGRLSKSNFSQGGIYLEKFVASAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA     ++   ++  A    ++  
Sbjct: 207 HIEVQIFGDGKGDVIALGERDCSLQRRNQKVIEETPAPGLSEEVRDALRSAAVNLARSAS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            +     +F++D    K ++LE+N +     G+T            G    +L+ WM+ +
Sbjct: 267 YKSAGTVEFVYDTTEEKFYFLEVNTRLQVEHGVTE--------EIFGV---DLVEWMILE 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|295706552|ref|YP_003599627.1| acetyl-CoA carboxylase biotin carboxylase [Bacillus megaterium DSM
           319]
 gi|294804211|gb|ADF41277.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium DSM
           319]
          Length = 450

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             M   + I  P +IK   GG   GI V K +Q +   +  +             Y++  
Sbjct: 143 DGMSIANDIGYPVIIKATAGGGGKGIRVAKNEQELIKGITITQQEAATAFGNPGVYIEKF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
                 +    L  +             ++          P+    +  +E+    A  A
Sbjct: 203 IEDFRHVEIQVLADSHGNTVHLGERDCSIQRRLQKLIEETPSPALDEKTRELMGDAAVKA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            QA+   G    +F++D    K +++E+N +
Sbjct: 263 AQAVNYTGAGTVEFIYDYRENKFYFMEMNTR 293


>gi|254293852|ref|YP_003059875.1| carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
 gi|254042383|gb|ACT59178.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
          Length = 673

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/272 (13%), Positives = 83/272 (30%), Gaps = 27/272 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L  L++ +      A     DK+ 
Sbjct: 61  IVIDK-IIEAIKQSGADAVHPG-YGFLSENSEFSKKLAKLKVAFIGPNPKAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++    GV   P  +      D+     + I  P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAQQAGVSTVPGHMGLIENSDAAVKISNKIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      +         ++  +   
Sbjct: 179 EGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGNIIYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    ++ ++     A    +A+        +F+ D      ++LE+N +     
Sbjct: 239 IEEAPSPFLDEVTRKAMGEEAVSLARAVNYDSAGTVEFIVDGDKN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDA 296
                    +       G    +L+  M+  A
Sbjct: 293 -----LQVEHPVTELITGV---DLVEQMIRSA 316


>gi|154150377|ref|YP_001403995.1| carbamoyl phosphate synthase large subunit [Candidatus
           Methanoregula boonei 6A8]
 gi|167006442|sp|A7I6J1|CARB_METB6 RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|153998929|gb|ABS55352.1| carbamoyl-phosphate synthase, large subunit [Methanoregula boonei
           6A8]
          Length = 1053

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 96/300 (32%), Gaps = 32/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
           SG     +L++ G +V  +         D D +            +  ++   +PD   +
Sbjct: 29  SGSQACRSLKEEGIEVVLVNSNPATIMTDPDMADQIYIEPLRANIIAKIIEKERPDGILS 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          L+ +EI  T    +      +K R         VP    + 
Sbjct: 89  GMGGQTGLNLTAELAEMGALKGVEILGTPLEAIYKGEDREKFRDLMNEIGEPVPKSIVLN 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                 D+   I  P V++P       G  + +  + +   +    S +   Q+LIE+ V
Sbjct: 149 TLSQIDDAIAKIGLPAVVRPAYTLGGAGGGIGRTREELTRIVELGLSRSRIHQVLIEESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   S D   I     +     +          +   +  D ++ ++  A 
Sbjct: 209 MGWKELEFEVMRDSTDTCIIVCSMENVDPMGIHTGESVVVAPI-LTLRDDEFQMMRSAAI 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G     F F         +E+N  P ++  S     +   GY    +   +
Sbjct: 268 HIIRALDVQGGCNIQFAF--KDGDYRVIEVN--PRVSRSS--ALASKATGYPIARVAAKI 321



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 84/294 (28%), Gaps = 39/294 (13%)

Query: 24  SALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH------------GNF 62
            AL + G +V  +         D D S  L    +  +   N+L             G  
Sbjct: 563 KALREEGVEVHIVNNNPETVSTDFDTSDRLFFEPMLLEDVTNILMTDEYYGVMVQFGGQN 622

Query: 63  GEDGLVQAILELLEIPYTH------SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +  V    EL                +  A   D+            P   S      
Sbjct: 623 AVNLAVPLEKELKRRGMCTRILGTSPDAMDIAEDRDRFSVLLTTLQIPSPANSSAYSEAE 682

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGI 175
             +    I  P +++P        + ++     +   + ++   +    +LI+ Y  + I
Sbjct: 683 AREKAERIGYPVLVRPSYVLGGRAMEIVHNTAELETYMKEAVRVSQHHPVLIDSYLRNAI 742

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234
           EL    + D    +    +   +         S +S  V+P +    ++   V+      
Sbjct: 743 ELDVDAVCDGKEVLIGGIMEHIEQ----AGIHSGDSACVIPTQSLSPEVIATVREYTKKI 798

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +G  G+             V+ LE N +   T     P ++   G    ++
Sbjct: 799 ALGLGVVGLVNIQMAV--KDNVVYILEANPRASRT----VPFVSKATGLPIAKI 846


>gi|308799207|ref|XP_003074384.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
 gi|116000555|emb|CAL50235.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 2123

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 60/151 (39%), Gaps = 5/151 (3%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDG 174
             + +   I  P ++K  +GG   GI +   ++ + ++  Q  +   G  + + Q     
Sbjct: 266 ECVAAAKRIGFPVMLKASEGGGGKGIRMSADEEQLRVNFEQVKAEVPGSPMFMMQLCTQA 325

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             L   ++GD   +   +            +          P     D+++E+++ A   
Sbjct: 326 RHLEVQIVGDEYGNAIALNGRDCSTQ----RRFQKIFEEGPPTVAKKDVFREMEKAAQRL 381

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG  G    ++L++  + K F+LE+N +
Sbjct: 382 TKNIGYIGAGTVEYLYNAETDKYFFLELNPR 412


>gi|333031058|ref|ZP_08459119.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
 gi|332741655|gb|EGJ72137.1| ATP-grasp fold domain protein, DUF201-type [Bacteroides coprosuis
           DSM 18011]
          Length = 371

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/267 (17%), Positives = 101/267 (37%), Gaps = 17/267 (6%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
             +S ID +  V L +      +  N L         V        I Y+ +    + + 
Sbjct: 45  HDISIIDKEAIVDLCIREGIKGIVSNALEPAVPTMAYVAEKCGFNGISYSTALKATNKVK 104

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           M +   K                      +  + + P +IKP     S G+  +   + +
Sbjct: 105 MRRCIEKHRACPQP-------HFEILNESTYSIDTFPVIIKPSDSSCSNGVSKVTCQEEL 157

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            + +  + S ++  ++L+E+Y++G E++   +   +         K    +       + 
Sbjct: 158 DVAIRNAFSASNQHEVLVEEYIEGKEISVESISFHNKHYILTITDKETTGA----PHFVE 213

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           + H  P+++ LD+ K+++        AIG   G + S+F  D     V+++E+  + G  
Sbjct: 214 TAHHQPSQLNLDLQKKIKTYTNNILNAIGISNGAAHSEFKIDA-DGNVYFIEVGARGGGD 272

Query: 270 PVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +S +  +    GY +   +  M+E A
Sbjct: 273 FIS-YQLVELSTGYDY---IKGMIEVA 295


>gi|319400862|gb|EFV89081.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           epidermidis FRI909]
          Length = 452

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 69/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDIAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                +   I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 DDAKKTAKKIGYPVIIKATAGGGGKGIRVARDEKELETGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  T   V         ++          P+ +  +  ++     A  
Sbjct: 201 FIENFRHIEIQIIGDTYGNVIHLGERDCTIQRRMQKLVEEAPSPVLSEDKRQEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDNQFYFMEMNTR 292


>gi|297180038|gb|ADI16263.1| biotin carboxylase [uncultured bacterium HF0010_16H03]
          Length = 402

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/213 (12%), Positives = 62/213 (29%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   ED     + E     +            DK+ +K +    G+ + P         
Sbjct: 82  YGFLAEDSNFAEMCEKSGFKFIGPSSETIKNMGDKITAKTLAEDAGIQIVPGYKEDIPKN 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V++ +  +      +           + Y++
Sbjct: 142 EEEFKKIARDIGYPIMIKATAGGGGRGMRVVEHEDDLISHAEITMQEAKNAFGNEKIYLE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAF 232
                   +    +   +            ++          PA+   +    +      
Sbjct: 202 KFIGNPRHIEVQIVGDGKGHAIHLGTRDCSMQRRHQKIIEEAPARNINEEALNKTYEACT 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + I   G+   +FL+     + +++E+N +
Sbjct: 262 NLCKKIKYEGVGTIEFLY--EDGEFYFIEMNTR 292


>gi|289168509|ref|YP_003446778.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           mitis B6]
 gi|288908076|emb|CBJ22916.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           mitis B6]
          Length = 455

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S K +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDESSGKFYFMEMNTR 293


>gi|237752895|ref|ZP_04583375.1| acetyl-CoA carboxylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375162|gb|EEO25253.1| acetyl-CoA carboxylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 476

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 63/192 (32%), Gaps = 25/192 (13%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
                    I  P ++K   GG  LGI V+ +++ +              + + D  + +
Sbjct: 142 YEIQKIARKIGYPVILKASSGGGGLGIRVVWEEKDLESAFEACKREALTFFKNEDVFMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V  +            +             +  D+ + +  
Sbjct: 202 YIQNPRHIEFQILADNYGNVIHLFERDCSIQ----RRHQKLIEIAPCPTMSTDLRRRMGS 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           +A  A +A         +FL D  +   +++E+N +     G+T            G+  
Sbjct: 258 VAVGAARAANYTNAGTVEFLVDDYNN-FYFMEMNTRIQVEHGVTE--------EITGF-- 306

Query: 286 RELLLWMVEDAS 297
            +L+   +  AS
Sbjct: 307 -DLIGRQIRIAS 317


>gi|167533097|ref|XP_001748229.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163773349|gb|EDQ86990.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1135

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 49/142 (34%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
            + P ++K   GG   G+ ++ K + +   + +  S           +V+        + 
Sbjct: 149 CNYPVIVKASMGGGGRGMRIVHKPEQLEEAINRCRSEALAAFGDGAVFVERFVPRPRHIE 208

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              +      V   +      +            K+P D+   +   A    +AI     
Sbjct: 209 VQIVGDGTDVVHLFERDCSVQRRHQKVVEIAPAPKLPEDVRMNICNDAVRLAKAINYSNA 268

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
              +FL DP + + +++E+N +
Sbjct: 269 GTVEFLLDPETNQHYFMEVNPR 290


>gi|86450119|gb|ABC96248.1| carbamoylphosphate synthetase [Heterophlebus sp. 'Plain']
          Length = 1277

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFSKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALNAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|328542343|ref|YP_004302452.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [polymorphum gilvum
           SL003B-26A1]
 gi|326412090|gb|ADZ69153.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Polymorphum gilvum
           SL003B-26A1]
          Length = 458

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/165 (16%), Positives = 55/165 (33%), Gaps = 8/165 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   GI +            Q+++           Y++ +      +   
Sbjct: 153 FPVMIKAAAGGGGRGIRIANNLAEFEKAFPQAAAEALAAFGDGGLYMEKVIGRARHIEVQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L     AV   +      +             +   + +E+   A    +A+G  G   
Sbjct: 213 VLGDGADAVHCFERECSLQRRRQKVWEEAPSLALSDKVREELCASAVRLARAVGYSGAGT 272

Query: 246 SDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPEMAAYAG 282
            ++L+D    + +++E+N       P    +T + +  EM   AG
Sbjct: 273 IEYLYDDAEDRFYFIEMNTRIQVEHPVTEMITGIDLVAEMLRIAG 317


>gi|322501625|emb|CBZ36706.1| unnamed protein product [Leishmania donovani BPK282A1]
          Length = 2168

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P +IK  +GG   GI   K  + +       S    G  + + 
Sbjct: 197 YVNSPEECEEVCRRIGFPVMIKASEGGGGKGIRSCKCLKDVKSLFFAVSEEVKGCHIFVM 256

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + ++    L   ++ D   +   +            +             +   I   ++
Sbjct: 257 RMLENVRHLEVQLLADCYGNCIAVRTRDCSVQ----RRHQKIIEEGPAFGVDPAIITAME 312

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           R A     A+   G+   ++++D  + K ++LE+N +
Sbjct: 313 RAAIQLACAVKYCGLGTVEYMYDKETHKFYFLELNPR 349


>gi|302123182|gb|ADK93180.1| CAD [Heterophlebus versabilis]
          Length = 1264

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 345 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 404

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 405 TFGGQTALNCGVELDRAGVFSKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 464

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 465 VYSVAEALNAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 522

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 523 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 581

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 582 AIXVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 637

Query: 291 WM 292
            +
Sbjct: 638 KL 639


>gi|300857895|ref|YP_003782878.1| pyruvate carboxylase [Corynebacterium pseudotuberculosis FRC41]
 gi|300685349|gb|ADK28271.1| pyruvate carboxylase [Corynebacterium pseudotuberculosis FRC41]
 gi|302205622|gb|ADL09964.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis C231]
 gi|302330174|gb|ADL20368.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis 1002]
 gi|308275857|gb|ADO25756.1| Pyruvate carboxylase [Corynebacterium pseudotuberculosis I19]
          Length = 1141

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 73/234 (31%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E+  +        + +         L+ DK  
Sbjct: 76  LDIDEVIRAA-KQTGADAVYPG-YGFLSENARLARECAENGLTFIGPPPSVLDLTGDKSA 133

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P            +   L      P  +K + GG   G+  ++K + +  
Sbjct: 134 AVAAAREAGLPTLTETEPTDDPKELAILSKDQVYPLFVKAVAGGGGRGMRFVEKPEDLEK 193

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y +   +    +    L   E  +         L+       
Sbjct: 194 LAAEASREAAAAFGDGRVYAERAVINPQHIEVQILGDAEGNIVHLYERDCSLQRRHQKVV 253

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+    D+  ++   A    + IG  G    +FL D     V ++E+N +
Sbjct: 254 EIAPAQHLDPDLRDKICADAVAFARHIGYMGAGTVEFLVDEDGNHV-FIEMNPR 306


>gi|262382192|ref|ZP_06075330.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_33B]
 gi|298375224|ref|ZP_06985181.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_19]
 gi|262297369|gb|EEY85299.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_33B]
 gi|298267724|gb|EFI09380.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_19]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+   +P+    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIEKERPEGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +    V    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVRKLDEIDVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|256839525|ref|ZP_05545034.1| carbamoyl-phosphate synthase, large subunit [Parabacteroides sp.
           D13]
 gi|256738455|gb|EEU51780.1| carbamoyl-phosphate synthase, large subunit [Parabacteroides sp.
           D13]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+   +P+    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIEKERPEGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +    V    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVRKLDEIDVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|255014140|ref|ZP_05286266.1| carbamyl phosphate synthetase [Bacteroides sp. 2_1_7]
 gi|301310763|ref|ZP_07216702.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. 20_3]
 gi|300832337|gb|EFK62968.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. 20_3]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+   +P+    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIEKERPEGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +    V    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVRKLDEIDVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|260949973|ref|XP_002619283.1| hypothetical protein CLUG_00442 [Clavispora lusitaniae ATCC 42720]
 gi|238846855|gb|EEQ36319.1| hypothetical protein CLUG_00442 [Clavispora lusitaniae ATCC 42720]
          Length = 1864

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 818 AAALEYPVMVKSTAGGGGIGLQKVDSEEDIERVFQTVQHQGQSYFGDAGVFLERFVENAR 877

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     L+  +       PA    +   ++++  A     ++ 
Sbjct: 878 HVEIQMFGDGYGKAIALGERDCSLQRRNQKIVEETPAPNLPEATRQKMRSAAEALGSSMN 937

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 938 YKCAGTVEFIYDERRDEFYFLEVNAR----------LQVEHPITEMVTGL---DLVEWML 984

Query: 294 EDAS 297
             A+
Sbjct: 985 LIAA 988


>gi|209884273|ref|YP_002288130.1| carbamoyl-phosphate synthase, large subunit [Oligotropha
           carboxidovorans OM5]
 gi|209872469|gb|ACI92265.1| carbamoyl-phosphate synthase, large subunit [Oligotropha
           carboxidovorans OM5]
          Length = 1109

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 90/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDL--- 53
           SG     AL++ G++V  +         D D              V  ++   +  +   
Sbjct: 29  SGTQAVKALQEEGYRVVLVNSNPATIMTDPDLADATYVEPITPEIVAKIIEKERHTIPGG 88

Query: 54  --AFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G              +LE  ++    +   A   + D+ R ++ +   G+  
Sbjct: 89  FAVLPTMGGQTALNCALSLRKMGVLEKFDVEMIGATADAIDKAEDRGRFREAMDKIGLES 148

Query: 108 CPSILVN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             SI        + +   I  P +I+P       G  +          +      +  ++
Sbjct: 149 PRSIQTKTLPDALRALEEIGLPAIIRPSFTLGGTGGGIAYTKAEFIDIVEGGIDASPTNE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ V G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESVLGWKEFEMEVVRDKKDNCIIICAIENIDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASIAVLREIGVETGGSNVQFAINPADGRMVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 39.5 bits (90), Expect = 0.57,   Method: Composition-based stats.
 Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 4/55 (7%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +G   +   +  +     +++ LE+N +   T     P +A   G    ++   +
Sbjct: 854 LGLDVVGLMNVQYAIKDGEIYVLEVNPRASRT----VPFVAKVVGLPVAKIAARI 904


>gi|150007235|ref|YP_001301978.1| carbamyl phosphate synthetase [Parabacteroides distasonis ATCC
           8503]
 gi|149935659|gb|ABR42356.1| carbamyl phosphate synthetase [Parabacteroides distasonis ATCC
           8503]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       V  V+   +P+    
Sbjct: 27  SGSQALKAIKEEGIQTVLINPNIATVQTSEGVADTVYFLPVTPFFVEKVIEKERPEGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   +    + + A   + D+    + +    V    S  
Sbjct: 87  AFGGQTALNCGVALYQSGVLEKYGVKVLGTPVQAIMDTEDRELFVRKLDEIDVKTIKSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   +  P +++       LG      ++ +  D+L   +++   Q+L+E+
Sbjct: 147 VENAADARRAAAELGYPVIVRAAYALGGLGSGFCDNEEEL--DVLVEKAFSFSPQVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 205 SLKGW-KEVEYEVVRDRFDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNTDYHKLREL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + +DP S     +E+N +  ++  S     +   GY   
Sbjct: 264 AIRIIRHIGIVGECNVQYAYDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|149919235|ref|ZP_01907718.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Plesiocystis
           pacifica SIR-1]
 gi|149819949|gb|EDM79371.1| Acetyl-/propionyl-coenzyme A carboxylase alpha chain [Plesiocystis
           pacifica SIR-1]
          Length = 510

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 82/252 (32%), Gaps = 19/252 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   K          D      +G   E        +   I +   
Sbjct: 53  EAVHIGPTPSAQSYLVAEKIIAAAKQTGADAIHPG-YGFLSERASFVEACDAAGITFIGP 111

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPLKGGSSL 139
           G  A  +  DK+R+++ + +  VP+ P           + +   I  P ++K   GG   
Sbjct: 112 GTEAMNVMGDKVRARKAMIAAEVPLVPGREDLEGVDDALAAAAEIGYPLMLKASAGGGGK 171

Query: 140 GIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           G+ ++  +  +        + +    GD  L  +          +   A    T + + +
Sbjct: 172 GMRIVHDEAQLRRGFEAAQREALAAFGDGRLFVERAVMKARHVEIQLMADRHGTVVYLNE 231

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR- 255
            D          +        ++  ++   +  +A    +++   G +  +FLF+     
Sbjct: 232 RDCSVQRRHQKVIEEAPSPSPQMTPEVRAAMGEVACRVARSVNYVGAATVEFLFEEQDDG 291

Query: 256 --KVFWLEINVQ 265
             + ++LE+N +
Sbjct: 292 EPRFYFLEMNTR 303


>gi|86450111|gb|ABC96244.1| carbamoylphosphate synthetase [Oropezella sphenoptera]
          Length = 1276

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADMVYFLPLTPEYVEQVIKSERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELEKTGIFKKYNVKVMGTPIQSIIETEDRKIFSDRVAEIGEKVAPSVA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSIRQALDAAEKLEYPVMARAAFSLGGLGSGFANNKEELE--VLAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESDQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|146095603|ref|XP_001467621.1| acetyl-CoA carboxylase [Leishmania infantum JPCM5]
 gi|134071986|emb|CAM70685.1| putative acetyl-CoA carboxylase [Leishmania infantum JPCM5]
          Length = 2168

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P +IK  +GG   GI   K  + +       S    G  + + 
Sbjct: 197 YVNSPEECEEVCRRIGFPVMIKASEGGGGKGIRSCKCLKDVKSLFFAVSEEVKGCHIFVM 256

Query: 170 QYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + ++    L   ++ D   +   +            +             +   I   ++
Sbjct: 257 RMLENVRHLEVQLLADCYGNCIAVRTRDCSVQ----RRHQKIIEEGPAFGVDPAIITAME 312

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           R A     A+   G+   ++++D  + K ++LE+N +
Sbjct: 313 RAAIQLACAVKYCGLGTVEYMYDKETHKFYFLELNPR 349


>gi|34398181|gb|AAQ67180.1| CAD [Hybos sp. NCSU-99071974]
          Length = 1297

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPITPEYVEQVIKSERPDGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELEKNGIFSKYNVRIMGTPIRSIIETEDRKIFSERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +++   +  P + +       LG      +  +   +L   +  H  QL+I++
Sbjct: 488 VYSVREALEAATRLGYPVMARAAFSLGGLGSGFASNEAELN--VLAEQALAHSSQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPQSDEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|84501852|ref|ZP_01000010.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389847|gb|EAQ02481.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 489

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/234 (17%), Positives = 86/234 (36%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +      +  D      +G   E+    A LE   + +      A  L  DK+R
Sbjct: 62  LDIS-QIVAAAKKIGADAVHPG-YGFLSENAGFVAALEEAGVTFVGPTSQAIDLMGDKVR 119

Query: 96  SKQVVSSCGVPVCPSILVNRF---TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           ++  V   G PV PS + +      +D    +  P +IKP  GG   G+ V+++D ++  
Sbjct: 120 ARAFVEERGFPVAPSAIEDDDPATFVDRARAVGYPLLIKPSAGGGGKGMRVVREDSALET 179

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
           ++  +             +V+    +   +    +   +  V         ++       
Sbjct: 180 EIETARREGERYFGDGRLFVERYIESPRHIEVQVMGDGQGNVVHFWERECSIQRRFQKII 239

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P+     +  +E+   A    +A+  RG    +F++       ++LE+N +
Sbjct: 240 EETPSPALSPEQRQEICETAAGIARAVKYRGAGTVEFIY-ARDGAFYFLEMNTR 292


>gi|311745502|ref|ZP_07719287.1| carbamoyl-phosphate synthase, large subunit [Algoriphagus sp. PR1]
 gi|311302392|gb|EFQ79218.1| carbamoyl-phosphate synthase, large subunit [Algoriphagus sp. PR1]
          Length = 939

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/303 (14%), Positives = 89/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVL-AHLKPDLAF 55
           SG   A +L + G  V+ I         D              +S+  +L  H   D   
Sbjct: 29  SGSQAARSLREEGITVTLINSNPATIMTDPVTADHVYLLPLEKKSIVKILTEHPDIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
             + G    +  +        +          I A   + D+ + K+++   GV VC   
Sbjct: 89  PTMGGQTALNLAIDCDKAGIWKKFNTRMIGVDIDAIDTAEDREKFKELMKKIGVSVCEGS 148

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                    +    I  P +I+        G   ++K +     L      +   ++LIE
Sbjct: 149 TATSFLQGKEIAQEIGFPLIIRASYTLGGAGGAFVEKAEDFEKLLSAGLQASPVHEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           Q + G +     +   ++    +     +F    +      +             +    
Sbjct: 209 QSILGWKEYELEVMRDNIGNMIVICSIENFDPMGVHTGDSITVAPAMTLPDTVYQRMRNY 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              + +      G     F   P +  +  +EIN  P ++  S     +   GY   ++ 
Sbjct: 269 AITMMNSIGTFAGGCNVQFAVSPDNETIIGIEIN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/307 (12%), Positives = 98/307 (31%), Gaps = 40/307 (13%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI-----------DVDRSVGL 44
            V++G      G   E + S        +A ++ G++   I           D+   +  
Sbjct: 560 VVVLGSGPNRVGQGIEFDYSCV--HGVLAA-KECGYETIMINCNPETVSTDFDIADKLYF 616

Query: 45  ----------VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                     ++ H KP+     L G        +     ++I  T    L  A    + 
Sbjct: 617 EPVFWEHIYEIILHEKPEGVIVQLGGQTALKLAEKLEKYGIKIIGTSFEALDLAEDRGRF 676

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +    +    P   ++      ++    I  P +++P       G+ ++  ++ +   +
Sbjct: 677 STLLKENDVPYPEFGTVHTTDEALELCKTIGFPLLVRPSYVLGGQGMKIVINEKELEEHV 736

Query: 155 LQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +        +++L++ +++G IE     + D         +   +           +   
Sbjct: 737 VDVLRDIPNNEILLDHFLEGAIEAEADAICDGENVYIIGIMQHIEPAGIHSG---DSYAV 793

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P  +   + ++++        A+   G+    F     + KV+ +E N +   T    
Sbjct: 794 LPPYNLGDLVIRQIETYTEKIALALKTVGLINIQFAI--KNDKVYIIEANPRASRT---- 847

Query: 274 FPEMAAY 280
            P +   
Sbjct: 848 VPFICKA 854


>gi|262368317|ref|ZP_06061646.1| biotin carboxylase [Acinetobacter johnsonii SH046]
 gi|262315995|gb|EEY97033.1| biotin carboxylase [Acinetobacter johnsonii SH046]
          Length = 453

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 75/220 (34%), Gaps = 17/220 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E     +         L  +K+ +   +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAITAMRKAGVPTVPGSAN 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQL 166
            +  +  +     I  P ++K   GG   G+ ++++  ++          +  W   D +
Sbjct: 137 AVTPQNALAEAKEIGFPLIVKAASGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTV 196

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +E++      +   V+ D +     +            K         LP +   DI +
Sbjct: 197 YMERFLQTPRHVEVQVLADGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQARADILE 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   A + +  RG    +FLF     + F++E+N +
Sbjct: 257 ----ACVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|260554059|ref|ZP_05826322.1| acetyl/propionyl-CoA carboxylase [Acinetobacter sp. RUH2624]
 gi|260404798|gb|EEW98305.1| acetyl/propionyl-CoA carboxylase [Acinetobacter sp. RUH2624]
          Length = 646

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 70/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +   ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDCQDLEYLAAQAEQIGFPIMVKASAGGGGRGMRLVQQASELVEVLQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQQMGEAAVAAARACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|227818426|ref|YP_002822397.1| acetyl-CoA carboxylase [Sinorhizobium fredii NGR234]
 gi|227337425|gb|ACP21644.1| putative acetyl-CoA carboxylase, biotin carboxylase protein
           [Sinorhizobium fredii NGR234]
          Length = 461

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+    ++   +  +           E Y++       
Sbjct: 161 ADGIGYPVIIKAAGGGGGRGMRVVHDASALKDAVSVTREEARRAFGTPELYMEKFLQHPR 220

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  IP +I   V +    A Q IG
Sbjct: 221 HVEIQVLCDDHGNAVWLGHRDCSMQRRHQKVVEEAPAPGIPAEIAAAVGKRCADACQQIG 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FLF   + + +++E+N +
Sbjct: 281 YRGVGTFEFLF--ENGEFYFIEMNTR 304


>gi|223995593|ref|XP_002287470.1| predicted protein [Thalassiosira pseudonana CCMP1335]
 gi|220976586|gb|EED94913.1| predicted protein [Thalassiosira pseudonana CCMP1335]
          Length = 2251

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/226 (14%), Positives = 69/226 (30%), Gaps = 6/226 (2%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDG-LVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           +   LA   P + F    G              + +           +  + +   K   
Sbjct: 102 LPNTLAKSDPPIKFIGPAGPPMHALGDKIGSTIIAQNAGVPCIAWNGSHVVAEYDVKTGS 161

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                     ++       +   I  P +IK  +GG   GI ++ K + +     Q    
Sbjct: 162 LPEEAFNNACVMSALEASTAAEKIGFPIMIKASEGGGGKGIRMVDKTEDVQNAYRQVCGE 221

Query: 161 NHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
             G  + I +   +   L   ++ D   D   +            +          P   
Sbjct: 222 VPGSPIFIMKLSSNSRHLEVQLLADEYGDAIALNGRDCSVQ----RRHQKIIEEGPPVAA 277

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             D++K+++  A    +A+G       ++L+     K ++LE+N +
Sbjct: 278 TPDVWKQMEEAAVSLAKAVGYTNAGTVEYLYSEPDEKFYFLELNPR 323


>gi|154271444|ref|XP_001536575.1| bifunctional pyrimidine biosynthesis protein pyrABCN [Ajellomyces
           capsulatus NAm1]
 gi|150409245|gb|EDN04695.1| bifunctional pyrimidine biosynthesis protein pyrABCN [Ajellomyces
           capsulatus NAm1]
          Length = 2404

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVINHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKEEFEKLGIRVLGTPIDTIITTEDRELFARSMESIDEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 663 TLEEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRE--LCMKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|150866340|ref|XP_001385901.2| multifunctional pyrimidine biosynthesis protein (PYR1)
           [Scheffersomyces stipitis CBS 6054]
 gi|149387596|gb|ABN67872.2| multifunctional pyrimidine biosynthesis protein (PYR1)
           [Scheffersomyces stipitis CBS 6054]
          Length = 2211

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 457 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHERPDGIYC 516

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
              G       +    E  ++     G     +   + R     +   +    +    + 
Sbjct: 517 TFGGQTALSVGIDLKDEFADLGVKVLGTPIDTIITTEDRELFASAMADINEKCAKSEAVS 576

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 577 TVAEAVIAANNIGYPLIVRAAYALGGLGSGFADNEEELVE--LCNKAFATSPQVLVERSM 634

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 635 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 693

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 694 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 743


>gi|86450073|gb|ABC96225.1| carbamoylphosphate synthetase [Brachystoma sp. JKM-2006]
          Length = 1284

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGIFAKYNVKIMGTPIQSIIETEDRKIFAERVAQIGEQVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSIAEALEAAEKLGYPVMARAAFSLGGLGSGFASNIEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SMKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+NV+  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNVR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|83746796|ref|ZP_00943844.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|207721542|ref|YP_002251981.1| biotin carboxylase protein [Ralstonia solanacearum MolK2]
 gi|207744344|ref|YP_002260736.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
 gi|83726565|gb|EAP73695.1| Biotin carboxylase [Ralstonia solanacearum UW551]
 gi|206586703|emb|CAQ17288.1| biotin carboxylase protein [Ralstonia solanacearum MolK2]
 gi|206595749|emb|CAQ62676.1| biotin carboxylase protein [Ralstonia solanacearum IPO1609]
          Length = 456

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSEADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPTPDCIRLMGDKVSAKQAMIKSGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SDGALPDDPKEILATARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTREEAGRAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   V+ D   +   +            K         +P +  
Sbjct: 194 GNPEVYMEKFLENPRHVEIQVLADQHRNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 252 --LIERIGDRCADACKKIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|227820319|ref|YP_002824290.1| propionyl-CoA carboxylase subunit alpha [Sinorhizobium fredii
           NGR234]
 gi|227339318|gb|ACP23537.1| propionyl-CoA carboxylase alpha chain protein [Sinorhizobium fredii
           NGR234]
          Length = 678

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 82/276 (29%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      LE   + +    + A     DK+ 
Sbjct: 72  IVIDK-ILEAIRKTGADAVHPG-YGFLSENAAFAEALEKEGVAFIGPPVKAIEAMGDKIT 129

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +         +     I  P +IK   GG   G+ +   ++   
Sbjct: 130 SKKLAAKAGVSTVPGHMGLIEDAGEAVRIASSIGFPVMIKASAGGGGKGMRIAWNEREAR 189

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 190 EGFQSSKNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDRHGNTLYLGERECSIQRRNQKV 249

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  +      A    +A+G       +F+ D      ++LE+N +     
Sbjct: 250 IEEAPSPFLDETTRRAMSEQAVALAKAVGYHSAGTVEFIVDAERN-FYFLEMNTR----- 303

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  A+  +
Sbjct: 304 -----LQVEHPVTELITGL---DLVEQMIRVAAGEK 331


>gi|166364412|ref|YP_001656685.1| acetyl-CoA carboxylase biotin carboxylase subunit [Microcystis
           aeruginosa NIES-843]
 gi|166086785|dbj|BAG01493.1| biotin carboxylase [Microcystis aeruginosa NIES-843]
          Length = 448

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++K    +   L  +             Y++       
Sbjct: 149 ADDIGYPVLIKATAGGGGRGMRLVKSADELGNMLKAAQGEAEAAFGNSGVYLEKFIECPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+      +  ++   A  A ++I 
Sbjct: 209 HIEFQILADSHGNVIHLGERDCSIQRRHQKLLEEAPSPFLTPHLRSKMGNAAVKAAKSIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   +FL D      +++E+N +
Sbjct: 269 YVGVGTVEFLVDKHGN-FYFMEMNTR 293


>gi|163788691|ref|ZP_02183136.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriales
           bacterium ALC-1]
 gi|159875928|gb|EDP69987.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriales
           bacterium ALC-1]
          Length = 482

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 77/247 (31%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K       LH        G   E+     + E   I +    
Sbjct: 49  EAVCIGPAPSNESYLKGDKIIEVAKSLHVDAIHPGYGFLSENADFAELCEANGIIFIGPR 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A  +   K+ +K+ V    +P+ P     I            I  P +IK   GG   
Sbjct: 109 SKAIKVMGSKLAAKETVKGYNIPMVPGTDEAITDIPKAKKIAKEIGFPILIKASAGGGGK 168

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +++ +      + ++ S           +++    +   +    +      V     
Sbjct: 169 GMRIVENEAEFESQMDRAISEATNAFGDGSVFIEKYVGSPRHIEIQVMADMHGNVLHFFE 228

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P+ +   ++ +++ + A    ++    G    +FL D      +
Sbjct: 229 RECSVQRRHQKVVEEAPSAVLTPELREKMGQAAINVARSCDYIGAGTVEFLLDENLN-FY 287

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 288 FLEMNTR 294


>gi|159030646|emb|CAO88316.1| unnamed protein product [Microcystis aeruginosa PCC 7806]
          Length = 448

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++K    +   L  +             Y++       
Sbjct: 149 ADDIGYPVLIKATAGGGGRGMRLVKSADELGNMLKAAQGEAEAAFGNSGVYLEKFIECPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+      +  ++   A  A ++I 
Sbjct: 209 HIEFQILADSHGNVIHLGERDCSIQRRHQKLLEEAPSPFLTPHLRSKMGNAAVKAAKSIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   +FL D      +++E+N +
Sbjct: 269 YVGVGTVEFLVDKHGN-FYFMEMNTR 293


>gi|113869126|ref|YP_727615.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           eutropha H16]
 gi|113527902|emb|CAJ94247.1| biotin carboxylase [Ralstonia eutropha H16]
          Length = 450

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V+  + ++   +  +       + + +  + +   +  
Sbjct: 149 ARRVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNPEVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D       +            K         +P +    + + +      A 
Sbjct: 209 HVEIQILADQHRQAIWLGERDCSMQRRHQKVIEEAPAPHIPRR----LIERIGDRCAEAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +G RG    +FL+   + + +++E+N +
Sbjct: 265 KKMGYRGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|302307111|ref|NP_983665.2| ACR263Cp [Ashbya gossypii ATCC 10895]
 gi|299788842|gb|AAS51489.2| ACR263Cp [Ashbya gossypii ATCC 10895]
          Length = 2223

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 459 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVILHERPDAIYV 518

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 519 TFGGQTALSVGIEMKDEFEALGVKVLGTSIDTIITTEDRELFANAMDEINEKCAKSKAAS 578

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+D        I  P +++       LG      +Q +    L + ++    Q+L+E+ +
Sbjct: 579 TVDEALEAVKDIGFPVIVRAAYALGGLGSGFASNEQELVD--LCNVAFASSPQVLVERSM 636

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 637 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 695

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 696 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 745


>gi|260642205|ref|ZP_05414861.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           finegoldii DSM 17565]
 gi|260623094|gb|EEX45965.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           finegoldii DSM 17565]
          Length = 510

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHNAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|212539870|ref|XP_002150090.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Penicillium marneffei ATCC 18224]
 gi|210067389|gb|EEA21481.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Penicillium marneffei ATCC 18224]
          Length = 2263

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 509 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 568

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 569 TFGGQTALQVGIQLKDEFEALGVRVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 628

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +D        I  P +++       LG    +  + +    L + ++    Q+LIE+ +
Sbjct: 629 NIDEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPKQLRE--LCTKAFAASPQVLIERSM 686

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 687 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 745

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 746 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 795


>gi|220933554|ref|YP_002512453.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|219994864|gb|ACL71466.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 448

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 93/321 (28%), Gaps = 53/321 (16%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A  + G +   +  + DR +  V LA            D   N           
Sbjct: 14  ALRILRACREMGIQTVAVHSEADRDLKHVRLADESVCIGPASSTDSYLNVPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +K  +   GVP  P 
Sbjct: 74  DAGAIHPGYGFLAENADFAERVESSGFVFIGPRAATIRLMGDKVCAKDAMLKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       + +   I  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 SGGALGDDPDENLRTAREIGYPVIIKAAGGGGGRGMRVVHSEGALLSSISLTRNEARNAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L                ++          PA  I  +  
Sbjct: 194 NNDTVYMEKFLEHPRHIEFQILADEHGNAVHLGERDCSMQRRHQKVLEEAPAPGITEEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
           + +      A + IG RG    +FL+     + +++E+N       P         EM  
Sbjct: 254 RRIGERCAQACRDIGYRGAGTFEFLY--EKGEFYFIEMNTRIQVEHP-------VTEM-- 302

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G    +L+   +  A+  +
Sbjct: 303 VTGI---DLIREQIRVAAGEK 320


>gi|289192333|ref|YP_003458274.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus sp.
           FS406-22]
 gi|288938783|gb|ADC69538.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus sp.
           FS406-22]
          Length = 501

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 80/318 (25%), Gaps = 54/318 (16%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNVLHGN 61
                 A  + G K   +      RS+   LA                  D   NV    
Sbjct: 14  AIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSYLNIDAILNVAEKA 73

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------------ 109
             +              +  +   A    +             +                
Sbjct: 74  KVDAIHPGYGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKIMKKAGVPLIPG 133

Query: 110 ---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              +I      ++    I  P V+K   GG  +G+ V    + +   +  + +       
Sbjct: 134 SEGAIEDIDEAVEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEVIESARNIAKSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      +         ++          P   +  ++ +
Sbjct: 194 DPTVFIEKYLENPRHIEIQLLGDRHGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
            +   A  A +AI        +FL+   +   ++LE+N +              +     
Sbjct: 254 RMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNTR----------IQVEHTVTEQ 301

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+  M++ A+
Sbjct: 302 VTGI---DLVKAMIKIAA 316


>gi|227549958|ref|ZP_03980007.1| pyruvate carboxylase [Corynebacterium lipophiloflavum DSM 44291]
 gi|227077974|gb|EEI15937.1| pyruvate carboxylase [Corynebacterium lipophiloflavum DSM 44291]
          Length = 1136

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 69/234 (29%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E   +        I +         L+ DK  
Sbjct: 68  LDIDE-IIAAAKKTGADAVYPG-YGFLSERAELARECAENGITFIGPSPETLDLTGDKAA 125

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + Q     G+P       +               P  +K + GG   G+  +++   +  
Sbjct: 126 AVQAAERAGLPTLKDSEPSDDPAQIAEFAKEFEFPVFVKAVAGGGGRGMRFVERQVDVEK 185

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            YV+   +    +    L   +  V         L+       
Sbjct: 186 LAAEASREAEAAFGDPRVYVERAVINPQHIEVQILADGQGNVIHLFERDCSLQRRHQKVV 245

Query: 213 HVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P   I  +  + +   A    + I   G    +FL D     V ++E+N +
Sbjct: 246 EIAPAQHITREQRERICADAVRFCEEINYAGAGTVEFLVDENGNHV-FIEMNPR 298


>gi|91774335|ref|YP_567027.1| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242]
 gi|91713350|gb|ABE53277.1| pyruvate carboxylase subunit A [Methanococcoides burtonii DSM 6242]
          Length = 498

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG  +G+ V+         L    S           +++      
Sbjct: 147 MADSIGYPVMIKASAGGGGIGMKVVYSKDEFQSSLESIQSVAQSAFGDPTVFIEKYVEEP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L  +             ++          P+ +   ++ K++   A  A ++I
Sbjct: 207 RHIEFQILADSHGNTVYVSDRECSIQRRHQKLMEEAPSPVLSPELRKKMGEAAVKAVKSI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL+       ++LE+N +
Sbjct: 267 GYENAGTVEFLY--SKGDFYFLEVNTR 291


>gi|119773718|ref|YP_926458.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella amazonensis SB2B]
 gi|119766218|gb|ABL98788.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella amazonensis SB2B]
          Length = 1517

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 88/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +  VPV P         +        I  P ++K ++GG   GI V+K+ + +    ++
Sbjct: 1065 QAQNVPVVPGSHGILSNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIPLFMK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVIEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A+   G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPP----ELKQQVMAYTKSLGDAVDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|134291002|ref|YP_001114771.1| urea amidolyase related protein [Burkholderia vietnamiensis G4]
 gi|134134191|gb|ABO58516.1| urea amidolyase related protein [Burkholderia vietnamiensis G4]
          Length = 1237

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 53/180 (29%), Gaps = 20/180 (11%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ + +    +           + +      Y++        + 
Sbjct: 151 IGYPVMLKSTAGGGGIGMSLCRDAAQLDAAFDSVVRLGNANFAHAGVYLEKFVEHARHLE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
                               ++  +       PA          +   A    +A+G   
Sbjct: 211 VQIFGDGRGGAIALGERDCSVQRRNQKVIEETPAPDLTAAERDALHASAVRLARAVGYAS 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
               +F+FD  +R  ++LE+N +              +       G    +L+ WM+  A
Sbjct: 271 AGTVEFVFDASARHFYFLEVNTR----------LQVEHCVTEAVTGI---DLVEWMILQA 317


>gi|70992333|ref|XP_751015.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus fumigatus Af293]
 gi|66848648|gb|EAL88977.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus fumigatus Af293]
 gi|159124585|gb|EDP49703.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Aspergillus fumigatus A1163]
          Length = 2253

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 505 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKHERPDAIYV 564

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 565 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMESINEKCAKSASAS 624

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG         +    L + ++    Q+LIE+ +
Sbjct: 625 NLEEALRVVEDIGFPVIVRAAYALGGLGSGFADNLDQLKE--LCTKAFAVSPQVLIEKSM 682

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 683 KGW-KEIEYEVVRDCQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 741

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 742 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 791


>gi|326531340|dbj|BAK05021.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1172

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+++      I+ +                       V  VL   +PD    
Sbjct: 111 SGSQAIKALKESNIDTILINPNIATIQTSHHLADTIFFLPVTADYVAYVLEKERPDGILL 170

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +         ILE L +    + I    +S D+    Q ++   +P   S+ 
Sbjct: 171 TFGGQSALNVGIQLDKMGILERLGVQVLGTPIRTLEVSEDRDLFVQALNEIDIPAAHSVA 230

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +D+   I  P +++       LG      ++ +    L + S +   Q+L+E+
Sbjct: 231 VSSIQGALDAAAQIGYPIIVRSAFSLGGLGSGFAHDEEELRN--LSAKSLSLSPQILVEK 288

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +  + Y  ++  
Sbjct: 289 SLKGW-KEVEYEVVRDAADNTIICCNMENFDPLGTHTGDSIVVAPSQTLTDEEYHMLRSA 347

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P S +   +E+N +  ++  S     +   GY   
Sbjct: 348 AIKIVRHVGVVGECNVQYALNPKSNEYMVIEMNAR--LSRSS--ALASKATGYPLA 399


>gi|298694809|gb|ADI98031.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ED133]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARNEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|254465300|ref|ZP_05078711.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
 gi|206686208|gb|EDZ46690.1| D-alanine--D-alanine ligase domain protein [Rhodobacterales
           bacterium Y4I]
          Length = 303

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/258 (12%), Positives = 66/258 (25%), Gaps = 21/258 (8%)

Query: 27  EDAGFKVSQIDVDRSVGLV--LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
              GF      V  S   +      +P L FN++     +         L  +       
Sbjct: 2   NRQGFDARIAHVSGSPVTLPWAEKDRPGLVFNLVEAIDRDMERAAE--VLPLLEEEGIPY 59

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              + +       +    C +        +        +     ++K +   +SLG+   
Sbjct: 60  TGCSAAAQLATLSKTAQKCLMTRHGLPTPDWPQAGPALVQLGRVIVKSITEHASLGMDAQ 119

Query: 145 KKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIELT---------------CGVMGDASLD 188
                      +      +G     E+Y++G E                   ++ +    
Sbjct: 120 SVVPGSQAAEEITRRQTRYGGTFFAEEYIEGREFNLSLLECGTGVRVLPPAEILFEDFEP 179

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDF 248
                V  +  +                      +   +  LA    Q  G  G +R DF
Sbjct: 180 GAPRIVDYAAKWDDTAHSYHHTPRRFTFPDRDSALLSRLAELAQRIWQVFGLSGYARVDF 239

Query: 249 LFDPLSRKVFWLEINVQP 266
             D    + + LE+N  P
Sbjct: 240 RVDE-GGRPWILEVNTNP 256


>gi|187932055|ref|YP_001892040.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187712964|gb|ACD31261.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPALNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E  +  +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESDFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|126726901|ref|ZP_01742740.1| Pyruvate carboxylase [Rhodobacterales bacterium HTCC2150]
 gi|126703859|gb|EBA02953.1| Pyruvate carboxylase [Rhodobacterales bacterium HTCC2150]
          Length = 1161

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/153 (11%), Positives = 46/153 (30%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P+++K   GG   G+  I  +  +   +++            E Y++
Sbjct: 157 MDEVRRMADEVGYPFMLKASWGGGGRGMRPIMHEGELVEKVMEGRREAEAAFGNGEGYLE 216

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AF 232
            +      +    L      +         ++  +       PA    +  +        
Sbjct: 217 RLVQRARHVEVQILGDKYGEIYHLFERDCSVQRRNQKVVERAPAPYLSEEQRAEICELGR 276

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +G       +FL D  + + F++E+N +
Sbjct: 277 KICAHVGYECAGTVEFLMDMDTEEFFFIEVNPR 309


>gi|16081856|ref|NP_394253.1| carbamoyl phosphate synthase large subunit [Thermoplasma
           acidophilum DSM 1728]
 gi|22095529|sp|Q9HK17|CARB_THEAC RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|10640070|emb|CAC11922.1| probable carbamoyl-phosphate synthase, large subunit [Thermoplasma
           acidophilum]
          Length = 1047

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 94/295 (31%), Gaps = 36/295 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L + G+ V  ++ +                      +V  ++   K D    
Sbjct: 29  SGSQACLSLREEGYYVVLLNSNPATIQTDHRIADRVYIEPITVEAVERIIEKEKIDAIEP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V+      L+   I    + + +  L+ D+ +  + + + G P      
Sbjct: 89  HMGGQTALNLAVKLKNSGILQRYGIKIIGTPVESIELAEDREKFYEFLKAMGEPQPARYR 148

Query: 113 VNRFTMDSQHLISP--PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           + R  +D      P  P +++        G  +++  Q +          +  D L + +
Sbjct: 149 IRRDHIDEDVASIPDIPVIVRTSFSLGGTGGSIVQNRQDLLAMAENLFRASDIDYLEVNE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQR 229
            ++G++                    +      +   +  S  V P++   DI Y+ ++ 
Sbjct: 209 SLEGMKE--IEYEVIRDSFGNCITVCNMENLDPMGVHTGESIVVTPSQTLSDIEYQMLRD 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            A      +G  G     F       + + +E+N +   T  S     +   GY 
Sbjct: 267 SAIRIISGLGIEGACNIQFALSE--GRYYVIEVNPR---TSRSS-ALASKATGYP 315



 Score = 41.0 bits (94), Expect = 0.23,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 101/300 (33%), Gaps = 35/300 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL---------- 58
           S KA   AL D G++   +         D D S  L    + P+   NV+          
Sbjct: 566 SVKAIL-ALRDMGYRSIMLNSNPETVSTDFDISDALFFEPVTPEYVVNVIRRSGCAGLIV 624

Query: 59  --HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL--VN 114
              G  G++   +    L +     +   +     D+    +V+   G+   P  +    
Sbjct: 625 QFSGQTGQNMARRIEEILGKHIVLGTSTESIDRIEDRTVFSRVIEGLGIKQPPFAIAENE 684

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             T+     +  P +++         + +I     +     +  + +  + L+ +   + 
Sbjct: 685 NDTVRKAMGLGLPIILRSSHVIGGRSMEIIYDVDYLADRAREIFAISK-NVLVSKYLENA 743

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           +E+    + D +       +   +       +S   +    P  +P+DI K+++ +    
Sbjct: 744 VEMDVDFVSDGTSYSICGIIVHIEEAG---VHSGDATMVYGPGIVPVDIEKKIEGIVGSM 800

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-LLWMV 293
            +     G+S            V+ +E+N +   +  S  P ++   G  +  L +  M+
Sbjct: 801 VREFRLIGLSNLQIAV--RDGDVYVIELNAR---SSRS-VPFISKATGIDWVRLAVECMI 854


>gi|86750370|ref|YP_486866.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
 gi|86573398|gb|ABD07955.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris HaA2]
          Length = 659

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 55/150 (36%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++K   ++P  L  + S   G        ++   
Sbjct: 154 MIAEAGKIGFPVMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQGAFGDPTVILERAI 213

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           +    +          A          ++          P+    + + +++  +A  A 
Sbjct: 214 VDPRHIEIQVFGDRYGAAIHLGERDCSVQRRHQKLIEEAPSPAVSEALREQMGTVAVNAV 273

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG  G    +FL D    + +++E+N +
Sbjct: 274 KAIGYEGAGTLEFLLDAQ-GQFYFMEMNTR 302


>gi|291276471|ref|YP_003516243.1| biotin carboxylase [Helicobacter mustelae 12198]
 gi|290963665|emb|CBG39497.1| biotin carboxylase [Helicobacter mustelae 12198]
          Length = 452

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I    +I +         L  DK ++K V+   GVPV 
Sbjct: 80  FEADAIFPG-YGFLSENQNFAEICAHHDIEFIGPSAEVMMLMSDKSKAKDVMKEAGVPVI 138

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +        I  P +IK   GG   G+ V++    +    L + S     
Sbjct: 139 MGSDGALKSYQEAQSVAEQIGYPIIIKAAAGGGGRGMRVVEDKSLLKNLYLAAESEALSA 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
                 Y++        +    L      V         ++  +       PA +    +
Sbjct: 199 FGDGTIYMEKFIRNPKHIEVQILGDKHGNVIHVGERDCSVQRRNQKLIEETPAVVLNPAV 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            +++   A  A + IG  G    +FL D  +   +++E+N +              +   
Sbjct: 259 RQKLLDTALRAAKHIGYVGAGTFEFLLDSNNEDFYFMEMNTR----------LQVEHTIS 308

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G    +++ WM+  A
Sbjct: 309 EMVSGL---DMVEWMIRIA 324


>gi|229818278|ref|ZP_04448559.1| hypothetical protein BIFANG_03577 [Bifidobacterium angulatum DSM
           20098]
 gi|229784377|gb|EEP20491.1| hypothetical protein BIFANG_03577 [Bifidobacterium angulatum DSM
           20098]
          Length = 615

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 47/147 (31%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
             H    P ++K   GG   GI V+  D+ +        S   GD      +V+      
Sbjct: 150 FAHTYGYPVMMKRTDGGGGHGITVVNDDEELRRFFASHDSLQGGDLN--AYFVEKFVRAA 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +       +             L+  +       PA    D +   +   +    + +
Sbjct: 208 RHVETQCGRDSHGNFTVYSTRDCSLQRRNQKLVEEAPAPFLSDAVIDTLGEYSRRLFETV 267

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G+   +F+      KV++LE+N +
Sbjct: 268 DYVGLGTCEFMVTEQ-GKVYFLEVNPR 293


>gi|154342750|ref|XP_001567323.1| acetyl-CoA carboxylase [Leishmania braziliensis MHOM/BR/75/M2904]
 gi|134064652|emb|CAM42754.1| putative acetyl-CoA carboxylase [Leishmania braziliensis
           MHOM/BR/75/M2904]
          Length = 2168

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 53/157 (33%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P +IK  +GG   GI     ++ +       S    G  + + 
Sbjct: 197 YVTSPEECEEVCQRIGFPVMIKASEGGGGKGIRCCTCEKDVKNLFFAVSEEVKGCHIFVM 256

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           + + +   L   ++ D   +   +            +             +   +   ++
Sbjct: 257 RMLGNVRHLEVQLLADCHGNCIAVGTRDCSVQ----RRHQKVIEEGPVFGVDPAVIMAME 312

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    +A+   G+   ++++D  + + ++LE+N +
Sbjct: 313 SAAIQLARAVRYCGVGTVEYMYDKETHEFYFLELNPR 349


>gi|116754105|ref|YP_843223.1| pyruvate carboxylase subunit A [Methanosaeta thermophila PT]
 gi|116665556|gb|ABK14583.1| pyruvate carboxylase subunit A [Methanosaeta thermophila PT]
          Length = 499

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 83/280 (29%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G     +  D     + A    +  +                       
Sbjct: 14  AIRIMRACRELGILSVAVYSDADRHALFAKYADEAVYIGPSPSSESYLNMEKIVKAALQT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--- 107
               +H   G   E+     + E   + +      +      K+ ++Q++   GVP+   
Sbjct: 74  GAEAIHPGYGFLAENPAFAKLCEENGVVFIGPSSSSIDAMGSKITARQMMKDAGVPIVPG 133

Query: 108 -CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               I       D    I  P +IKP  GG  +G+ ++ + + +   ++ + S       
Sbjct: 134 TERGISDPEEIADVAERIGYPIIIKPAAGGGGIGMKIVDRPEDLAPAVVSAQSIATSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               Y++        +    +                ++          P   +  ++ K
Sbjct: 194 DGTVYLEKYLSEPRHIEFQIMADNRGRTVYVSERECSIQRRHQKLIEEAPSPVMTPELRK 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +A  A +AI  R     +F++       ++LE+N +
Sbjct: 254 RMGEIAVKAAKAIRYRSAGTVEFMYSH--GDFYFLEMNTR 291


>gi|74003228|ref|XP_535817.2| PREDICTED: similar to methylcrotonoyl-Coenzyme A carboxylase 1
           (alpha) isoform 1 [Canis familiaris]
          Length = 725

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ ++     L  +              ++    T 
Sbjct: 194 HAGKIGYPVMIKAVRGGGGKGMRIVRSEEEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  D+ K++   A  A +A+
Sbjct: 254 RHVEVQVFGDYHGNAVYLFERDCSVQRRHQKIIEEAPGPGIKPDVRKKLGEAAVRAAKAV 313

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 314 NYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 360

Query: 294 EDASCLR 300
             A+  +
Sbjct: 361 RIAAGEK 367


>gi|119386392|ref|YP_917447.1| carbamoyl-phosphate synthase L chain, ATP-binding [Paracoccus
           denitrificans PD1222]
 gi|119376987|gb|ABL71751.1| biotin carboxyl carrier protein / biotin carboxylase [Paracoccus
           denitrificans PD1222]
          Length = 685

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 82/276 (29%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     +      +G   E+      LE   + +      A     DK+ 
Sbjct: 61  IVIDK-IMEAIRQTGAEAVHPG-YGFLSENMKFAEALEKEGVVFIGPPSPAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++    GV   P  +      D    IS     P +IK   GG   G+ +   DQ   
Sbjct: 119 SKKLAQEAGVSTVPGYMGLIADADEAVKISGQIGYPVMIKASAGGGGKGMRIAWNDQEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 179 EGFESSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLADKHGNCVYVHERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D      ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYASAGTVEFIVDGQKN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  A+  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEQMIRVAAGEK 320


>gi|119386849|ref|YP_917904.1| pyruvate carboxylase [Paracoccus denitrificans PD1222]
 gi|119377444|gb|ABL72208.1| pyruvate carboxylase [Paracoccus denitrificans PD1222]
          Length = 1144

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/153 (17%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I   + +P  + +            E Y++
Sbjct: 142 MEAIKREAAEIGYPLMLKASWGGGGRGMRPIMGPEELPEKVREGRREAEAAFGNGEGYLE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + L    +    L      +         ++  +       PA     +   EV  LA 
Sbjct: 202 KMILRARHVEVQLLGDGHGGLYHLYERDCTVQRRNQKVVERAPAPYLTPEQRAEVCELAL 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +A+G R     +FL D  S+  +++E+N +
Sbjct: 262 RIGRAVGYRNAGTVEFLMDMDSQAFYFIEVNPR 294


>gi|331220385|ref|XP_003322868.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
 gi|309301858|gb|EFP78449.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Puccinia graminis f. sp. tritici CRL 75-36-700-3]
          Length = 1178

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL ++  +   I+ +                       V  VL   +PD    
Sbjct: 105 SGSQAIKALRESNIETILINPNIATIQTSHHLASEVYFLPVTADYVAWVLEKERPDGILL 164

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G    +         ILE L +    + I    +S D+    + ++   +P   S  
Sbjct: 165 TFGGQSALNVGIQLDKMGILERLGVQVLGTPIQTLIVSEDRDLFVKALNEIDIPAAHSTA 224

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P +++       LG    + +  +    L + S +   Q+LIE+
Sbjct: 225 VSTISDALDAAKEIGYPVILRSAFSLGGLGSGFAQNEDELRD--LSAKSLSLSPQVLIEK 282

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +  D Y  ++  
Sbjct: 283 SLKGW-KEVEYEVVRDAADNVIICCNMENFDPLGTHTGDSIVVAPSQTLSDDDYHMLRSA 341

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P  R+   +E+N +  ++  S     +   GY   
Sbjct: 342 AIKIVRHVGVVGECNVQYALNPHKREYMVIEMNAR--LSRSS--ALASKATGYPLA 393


>gi|89256868|ref|YP_514230.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115315247|ref|YP_763970.1| acetyl-CoA carboxylase biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156503043|ref|YP_001429108.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
 gi|167009238|ref|ZP_02274169.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FSC200]
 gi|254368144|ref|ZP_04984164.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|89144699|emb|CAJ80030.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica LVS]
 gi|115130146|gb|ABI83333.1| acetyl-CoA carboxylase biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica OSU18]
 gi|134253954|gb|EBA53048.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. holarctica 257]
 gi|156253646|gb|ABU62152.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. holarctica FTNF002-00]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKKDLISAISITKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|33860620|ref|NP_892181.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
 gi|33633562|emb|CAE18519.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus subsp. pastoris str. CCMP1986]
          Length = 449

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYV 172
            +    I  P +IK   GG   G+ +++   ++      +       + +    + +   
Sbjct: 145 YEMAQEIGYPVIIKATAGGGGRGMRLVENKANLEKMFKAAQGEAEAAFGNDGLYMEKFIK 204

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               +   ++ D S +V  +            +             I   + K++   A 
Sbjct: 205 KPRHVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINYSLRKKMGNAAI 260

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A ++I   G    +FL D      +++E+N +
Sbjct: 261 AAAKSISYEGAGTVEFLVD-DDNNFYFMEMNTR 292


>gi|171184619|ref|YP_001793538.1| carbamoyl phosphate synthase large subunit [Thermoproteus
           neutrophilus V24Sta]
 gi|170933831|gb|ACB39092.1| carbamoyl-phosphate synthase, large subunit [Thermoproteus
           neutrophilus V24Sta]
          Length = 1025

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 88/296 (29%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A  + G +   ++ +                     + +  V+   +PD    
Sbjct: 26  SGSQALKAFREEGIETVLVNPNIATIQTSKLLADKVYFVPIQRQFLAEVIERERPDAIAC 85

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V            +++  T    +  ALS D  +         +P    
Sbjct: 86  GFGGQTALSACVDLHDSGVLDKYGVKVVGTPVRGIKRALSRDLFQKAMREVGIPIPPSSP 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++        G  V + ++ +   + ++ + +   ++L+E+
Sbjct: 146 ARSPEEALKVAREIGYPVVVRVSFNLGGAGAFVARSEEDLRARVYKAFAQSAIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G                  AV   +       ++  +        +  + Y+  + +
Sbjct: 206 YLEGW-KEVEFEVVRDAYDNVAAVVCMENIDPMGVHTGDSIVVAPCLTLTDEEYQTARNI 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +AI   G        +    + + +E N  P M+  S     +  +GY   
Sbjct: 265 SIGVARAIELVGEGNVQVAVNYAGPEQYAIETN--PRMSRSS--ALASKASGYPLA 316


>gi|159041861|ref|YP_001541113.1| carbamoyl phosphate synthase large subunit [Caldivirga
           maquilingensis IC-167]
 gi|157920696|gb|ABW02123.1| carbamoyl-phosphate synthase, large subunit [Caldivirga
           maquilingensis IC-167]
          Length = 1031

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A  + G +   ++ +                     + +  V+   +PD    
Sbjct: 23  SGIQALKAFREEGIRTILVNPNVATVQTTNVFADRVYFTPIKTQFLEKVIEQERPDAIAC 82

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       +            +++  T    + SALS D  ++  +     V    +
Sbjct: 83  GFGGQTALSACINLNDAGVLSKYGVKVLGTPIEGIRSALSRDLFKNLMLSKGLPVLKSVT 142

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +++        G  V +  + +   + ++ + +   ++LIE+
Sbjct: 143 AHGINEALRGAEEIGYPVLVRVSFNLGGAGAFVARSSEELVSRMHKALAQSEIKEVLIEK 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G +     +   S   +   V   +     +              +  D Y+  + +
Sbjct: 203 YIGGWKEIEFEVMRDSHGDSVAVVCMENIDPMGIHTGDSVVVAPC-LTLTNDEYQRSRYI 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    ++IG  G        D    +++ +E N  P M+  S     +  +GY    +  
Sbjct: 262 SIKVAESIGLVGECNVQVAIDNKGPEMYVVETN--PRMSRSS--ALASKASGYPLAYIAA 317

Query: 291 WM 292
            +
Sbjct: 318 KL 319


>gi|222824290|ref|YP_002575864.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
 gi|222539511|gb|ACM64612.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
          Length = 443

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/219 (18%), Positives = 77/219 (35%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I     I +    + A AL  DK ++KQV+   GVPV P  
Sbjct: 77  DAIFPG-YGFLSENQNFVEICAKHNIKFIGPSVAAMALMSDKSKAKQVMQRAGVPVIPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +            I  P ++K   GG   G+ V++ ++ +      + S        
Sbjct: 136 DGALNGVEAAKKLAKEIGYPVILKAAAGGGGRGMRVVEDEKDLEKAYWSAESEAMSAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-E 226
              Y++        +    +  +   V         ++          PA +  +  +  
Sbjct: 196 GTMYMEKYIQNPRHIEVQIIGDSFGNVIHLGERDCSMQRRHQKLIEESPAILLDEKTRAR 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +AI   G    +FL D  +   +++E+N +
Sbjct: 256 LHETAVKAAKAIDYEGAGTFEFLVD-KNLDFYFIEMNTR 293


>gi|269103645|ref|ZP_06156342.1| biotin carboxylase of acetyl-CoA carboxylase [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268163543|gb|EEZ42039.1| biotin carboxylase of acetyl-CoA carboxylase [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 447

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESVCIGPARGTESYLNIPRIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ ++ I   +  +       +
Sbjct: 134 SDGPLGNDEDKNKAIAKRIGYPVIIKASGGGGGRGMRVVRNEKEIVEAIAMTRAEAKACF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|228987090|ref|ZP_04147215.1| Pyruvate carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
 gi|228772684|gb|EEM21125.1| Pyruvate carboxylase [Bacillus thuringiensis serovar tochigiensis
           BGSC 4Y1]
          Length = 1148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229157524|ref|ZP_04285601.1| Pyruvate carboxylase [Bacillus cereus ATCC 4342]
 gi|228625974|gb|EEK82724.1| Pyruvate carboxylase [Bacillus cereus ATCC 4342]
          Length = 1148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|223040860|ref|ZP_03611125.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter rectus
           RM3267]
 gi|222877891|gb|EEF13007.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter rectus
           RM3267]
          Length = 443

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/219 (19%), Positives = 79/219 (36%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I    ++ +    + A AL  DK ++KQ++   GVPV P  
Sbjct: 77  DAIFPG-YGFLSENQNFVEICSHHKLKFIGPSVAAMALMSDKSKAKQMMQRAGVPVIPGS 135

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +   +   +    I  P ++K   GG   G+ V++ ++ I      + S        
Sbjct: 136 DGAVADTKAAKELAKQIGYPVILKAAAGGGGRGMRVVECEEDIEKAFWSAESEAMSAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++   L    +    +  +   V         ++          PA +   D    
Sbjct: 196 GTMYMEKYILNPRHIEVQIIGDSHGNVLHIGERDCSMQRRHQKLIEESPAILLDDDTRAR 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +AI   G    +FL D      +++E+N +
Sbjct: 256 LHETAIRAAKAIDYEGAGTFEFLVD-KDLNFYFIEMNTR 293


>gi|52141541|ref|YP_085288.1| pyruvate carboxylase [Bacillus cereus E33L]
 gi|51975010|gb|AAU16560.1| pyruvate carboxylase [Bacillus cereus E33L]
          Length = 1148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|34557962|ref|NP_907777.1| phosphoribosylglycinamide formyltransferase 2 [Wolinella
           succinogenes DSM 1740]
 gi|81653439|sp|Q7M8I0|PURT_WOLSU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|34483680|emb|CAE10677.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE-FORMATE DEPENDENT
           [Wolinella succinogenes]
          Length = 387

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 78/273 (28%), Gaps = 31/273 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                       ++  ++    P      +
Sbjct: 23  GKEVIIEAQRLGLETIAVDKYENAPAHGVAHRSYVVNMQDKEALLDLIQKENPTYILPEV 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         IP   +  L       +  + + V          +       
Sbjct: 83  EAISLEALLEAEEKGFCVIPSAKAVSLTMNRKGIRTFAAEEVGVKT-SQYRFVKTLDELR 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  V +  + I     ++         LI +     +  
Sbjct: 142 SAAEEIGYPCVIKPVMSSSGHGQSVCRMAEEIEACFEEAKEARGDSSELIVEEFIPFDYE 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++   +        P         +          PA++   + K+ Q++A     A+
Sbjct: 202 ITLLTLNNGKKITFCDPIGHI-----QKGGDYIFSWQPAQMKKSVLKKAQKIARDVVSAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G RGI   +        +V++ E++ +P   GM
Sbjct: 257 GGRGIFGVELFI--KKNEVYFSEVSPRPHDTGM 287


>gi|116192939|ref|XP_001222282.1| hypothetical protein CHGG_06187 [Chaetomium globosum CBS 148.51]
 gi|88182100|gb|EAQ89568.1| hypothetical protein CHGG_06187 [Chaetomium globosum CBS 148.51]
          Length = 747

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            LH   G   E+       E   I +      A A   DK RSK+++++ GVP  P    
Sbjct: 127 ALHPGYGFLSENPAFARACEEAGIVFVGPPATAMADMGDKARSKEIMTAAGVPCVPGYHG 186

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I  P ++K +KGG   G+ +++ D+     L  + +          
Sbjct: 187 AEQSPGELRARAREIKYPVLLKSVKGGGGKGMRIVRTDEEFEAQLKSARAEARASFGDGG 246

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + +   +              +              ++          PA +  D+ +  
Sbjct: 247 EVMLVEKYVVRPRHVEVQVFADKYGNCVALGERDCSVQRRHQKIVEESPAPLLDDVTRHD 306

Query: 228 QRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     A+G  G    +F+ D  + + +++E+N +
Sbjct: 307 LWEKARTAALAVGYVGAGTVEFILDKDTGEFYFMEMNTR 345


>gi|47565822|ref|ZP_00236861.1| pyruvate carboxylase [Bacillus cereus G9241]
 gi|47557102|gb|EAL15431.1| pyruvate carboxylase [Bacillus cereus G9241]
          Length = 1148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRN 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|241563394|ref|XP_002401686.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
 gi|215501878|gb|EEC11372.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
          Length = 655

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 53  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 101

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 102 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAVD------IAKEIGFPVIVKAAA 155

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 156 GGGGRGMRVVNNPTEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 215

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 216 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 271

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 272 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIKIAAGEK 314


>gi|167471053|ref|ZP_02335757.1| carbamoyl-phosphate synthase, large subunit [Yersinia pestis FV-1]
          Length = 715

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 371 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 430

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 431 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKATG 490

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 491 LGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 547

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 548 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 607

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 608 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKIAAR 650



 Score = 37.5 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 222 DIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------- 272
             Y+ ++  +    + IG   G S   F  +P + ++  +E+N  P ++  S        
Sbjct: 42  KEYQIMRNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATG 99

Query: 273 -IFPEMAA--YAGYSFRELLLWM 292
               ++AA    GY+  EL+  +
Sbjct: 100 FPIAKIAAKLAVGYTLDELMNDI 122


>gi|138895969|ref|YP_001126422.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           thermodenitrificans NG80-2]
 gi|196248861|ref|ZP_03147561.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           G11MC16]
 gi|134267482|gb|ABO67677.1| AccC, acetyl-CoA carboxylase subunit, biotin carboxylase subunit
           [Geobacillus thermodenitrificans NG80-2]
 gi|196211737|gb|EDY06496.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           G11MC16]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 85/277 (30%), Gaps = 33/277 (11%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   +  + DR  + + LA            D   N              
Sbjct: 17  IIRACRELGIETVAVFSEADRDALHVQLADEAYCIGPTASKDSYLNFTNIMSVATLTGCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENEAFAELCRECNVTFIGPSPEAITKMGIKDIARETMREAGVPIVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I            I  P +IK   GG   GI V + ++ +   +  +            
Sbjct: 137 VIESIDEARAIAAEIGYPVIIKATAGGGGKGIRVARNEEELIKGINITQQEAATAFGNPG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +             ++          P+     +I +++ 
Sbjct: 197 VYIEKYIEDFRHVEIQVLADSYGNTIHLGERDCTIQRRLQKLVEEAPSPALDDEIRQKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A+   G    +F+FD  + + +++E+N +
Sbjct: 257 EAAVKAAKAVNYTGAGTVEFIFDHRNNEFYFMEMNTR 293


>gi|86741884|ref|YP_482284.1| carbamoyl phosphate synthase large subunit [Frankia sp. CcI3]
 gi|86568746|gb|ABD12555.1| carbamoyl-phosphate synthase large subunit [Frankia sp. CcI3]
          Length = 1130

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYVEPITSDIVAKIIERERPDAILA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+  E+    + I A     D+   K +V++ G     S +
Sbjct: 89  TMGGQTALNTAVALHDAGVLDRFEVRLIGANIDAIRAGEDRQAFKDIVAAVGGETARSAI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +    S P V++P       G         +        + +   ++L+E+
Sbjct: 149 CHTVAECLTAGEEFSYPVVVRPSFTLGGAGSGFAHDSGELRRMAADGLAASPSTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SVLGWKEYELELMRDRADNVVVVCSIENVDPMGVHTGDSITVAPAMTLTDREYQRMRDMA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMRAVGVDAGGCNIQFAVDPATGRQVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|329954802|ref|ZP_08295819.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           clarus YIT 12056]
 gi|328526906|gb|EGF53917.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           clarus YIT 12056]
          Length = 503

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   G+ +I K++ +      + S +         Y++       
Sbjct: 148 CNEIGYPVMLKASMGGGGKGMRLIHKEEEVVEAYNTARSESMSSFGDDTVYLEKFVEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     ++ KE+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTPELRKEMGEKAVAAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +R  ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KNRNFYFLEMNTR 292


>gi|163750399|ref|ZP_02157639.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           benthica KT99]
 gi|161329889|gb|EDQ00875.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           benthica KT99]
          Length = 705

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P +IK   GG   G+ +++    +  ++  +       + +   L+        
Sbjct: 153 ANKMGFPLLIKASYGGGGKGMRIVENSAEVLENIHSARREASSSFGNDKLLMERYLRQPR 212

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   ++           +             +  ++  E+   A  A 
Sbjct: 213 HVEVQVFADNYGNCIYLSDRDCSIQ----RRHQKVVEEAPAPGLSDELRVEMGEAAVAAA 268

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI  RG    +FL D      +++E+N +
Sbjct: 269 KAIDYRGAGTIEFLLDT-DNSFYFMEMNTR 297


>gi|34398183|gb|AAQ67181.1| CAD [Iteaphila sp. NCSU-99072186]
          Length = 1294

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+      V+     V    +
Sbjct: 430 TFGGQTALNCGVELDRAGVFQKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 490 VYSVAEALDAAEKLGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|46409051|dbj|BAD16654.1| urea carboxylase homologue [Oleomonas sagaranensis]
          Length = 1171

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 18/180 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ +      +                    Y++    T   + 
Sbjct: 150 IGYPVMLKSTAGGGGIGMSLCHDASELQARFEAVQRMASSSFGDARVYIERFVSTARHVE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                  +  V         L+  +       PA     ++   +   A    +A+    
Sbjct: 210 VQIFGDGKGNVVALGERDCSLQRRNQKVVEETPAPGLSPELRARLHAAAVALGKAVAYES 269

Query: 243 ISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D       +LE+N       P +T  S+F       G    +L+ WM+  A+
Sbjct: 270 AGTVEFIYDVARGDFSFLEVNTRLQVEHP-VTE-SVF-------GV---DLVEWMIRQAA 317


>gi|294851023|ref|ZP_06791699.1| pyruvate carboxylase [Brucella sp. NVSL 07-0026]
 gi|294821666|gb|EFG38662.1| pyruvate carboxylase [Brucella sp. NVSL 07-0026]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|256114349|ref|ZP_05455082.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
 gi|265995648|ref|ZP_06108205.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
 gi|262766932|gb|EEZ12550.1| pyruvate carboxylase [Brucella melitensis bv. 3 str. Ether]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|254714628|ref|ZP_05176439.1| pyruvate carboxylase [Brucella ceti M644/93/1]
 gi|254717526|ref|ZP_05179337.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261219361|ref|ZP_05933642.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261322423|ref|ZP_05961620.1| pyruvate carboxylase [Brucella ceti M644/93/1]
 gi|260924450|gb|EEX91018.1| pyruvate carboxylase [Brucella ceti M13/05/1]
 gi|261295113|gb|EEX98609.1| pyruvate carboxylase [Brucella ceti M644/93/1]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|254700431|ref|ZP_05162259.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
 gi|261750930|ref|ZP_05994639.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
 gi|261740683|gb|EEY28609.1| pyruvate carboxylase [Brucella suis bv. 5 str. 513]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|239948247|ref|ZP_04700000.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           endosymbiont of Ixodes scapularis]
 gi|239922523|gb|EER22547.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           endosymbiont of Ixodes scapularis]
          Length = 665

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAVD------IAKEIGFPVIVKAAA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 166 GGGGRGMRVVNNPTEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 282 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIKIAAGEK 324


>gi|225853228|ref|YP_002733461.1| pyruvate carboxylase [Brucella melitensis ATCC 23457]
 gi|256263282|ref|ZP_05465814.1| pyruvate carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|225641593|gb|ACO01507.1| pyruvate carboxylase [Brucella melitensis ATCC 23457]
 gi|263093248|gb|EEZ17345.1| pyruvate carboxylase [Brucella melitensis bv. 2 str. 63/9]
 gi|326409787|gb|ADZ66852.1| pyruvate carboxylase [Brucella melitensis M28]
 gi|326539503|gb|ADZ87718.1| pyruvate carboxylase [Brucella melitensis M5-90]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|223043233|ref|ZP_03613280.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus capitis
           SK14]
 gi|314933700|ref|ZP_07841065.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
 gi|222443444|gb|EEE49542.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus capitis
           SK14]
 gi|313653850|gb|EFS17607.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           caprae C87]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/212 (14%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  +    VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDVAKAEMIKANVPVVPGSEGLIQSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +   +  +             Y++ 
Sbjct: 141 DDAKKVAKKIGYPVIIKATAGGGGKGIRVARDEKELETGIRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  +   V         ++          P+ I  +  ++     A  
Sbjct: 201 FIENFRHIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILSEEKRQEMGNAAVR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D      +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDDDNFYFMEMNTR 292


>gi|189237354|ref|XP_969475.2| PREDICTED: similar to GA15253-PA [Tribolium castaneum]
          Length = 700

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 82/317 (25%), Gaps = 50/317 (15%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNVLHGNFGE 64
                   G K   +  D D++   V                  L+ D    V H +  +
Sbjct: 44  VLRTARRLGVKTVAVYSDADKNSLHVSQADEAYNIGPPQASQSYLRGDKILEVAHKSGCQ 103

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKM-----RSKQVVSSCGVPVCPSILVNRFTMD 119
                       + +  +      + M               S  +     + +      
Sbjct: 104 AIHPGYGFLSENVEFAENCEKNKIIFMGPPASAIRDMGIKSKSKEIMSKAGVPIIGGYHG 163

Query: 120 S----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I  P +IK ++GG   G+ +   +      L  + S          
Sbjct: 164 EDQDRAKLKAEALKIGFPVMIKAVRGGGGKGMRIALTESEFEEALESAKSEAQKAFGDSV 223

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             ++        +                     ++          PA  I  ++  E+ 
Sbjct: 224 VLLEKFVQEPRHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGISEELRAELG 283

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A +A+G  G    +F+ D  S    ++E+N       P +T +            
Sbjct: 284 AAAVRAAKAVGYVGAGTVEFILDRKSHNFHFMEMNTRLQVEHP-ITEM-----------I 331

Query: 284 SFRELLLWMVEDASCLR 300
           +  +L+ W ++ A   +
Sbjct: 332 TGTDLVEWQIKVARGEK 348


>gi|163845358|ref|YP_001623013.1| pyruvate carboxylase [Brucella suis ATCC 23445]
 gi|163676081|gb|ABY40191.1| pyruvate carboxylase [Brucella suis ATCC 23445]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|161619705|ref|YP_001593592.1| pyruvate carboxylase [Brucella canis ATCC 23365]
 gi|260568856|ref|ZP_05839324.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
 gi|161336516|gb|ABX62821.1| pyruvate carboxylase [Brucella canis ATCC 23365]
 gi|260154240|gb|EEW89322.1| conserved hypothetical protein [Brucella suis bv. 4 str. 40]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|270007092|gb|EFA03540.1| hypothetical protein TcasGA2_TC013543 [Tribolium castaneum]
          Length = 703

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/317 (12%), Positives = 82/317 (25%), Gaps = 50/317 (15%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNVLHGNFGE 64
                   G K   +  D D++   V                  L+ D    V H +  +
Sbjct: 44  VLRTARRLGVKTVAVYSDADKNSLHVSQADEAYNIGPPQASQSYLRGDKILEVAHKSGCQ 103

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKM-----RSKQVVSSCGVPVCPSILVNRFTMD 119
                       + +  +      + M               S  +     + +      
Sbjct: 104 AIHPGYGFLSENVEFAENCEKNKIIFMGPPASAIRDMGIKSKSKEIMSKAGVPIIGGYHG 163

Query: 120 S----------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I  P +IK ++GG   G+ +   +      L  + S          
Sbjct: 164 EDQDRAKLKAEALKIGFPVMIKAVRGGGGKGMRIALTESEFEEALESAKSEAQKAFGDSV 223

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             ++        +                     ++          PA  I  ++  E+ 
Sbjct: 224 VLLEKFVQEPRHVEVQVFADMHGNAVHLFERDCSVQRRHQKIIEEAPAPGISEELRAELG 283

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A +A+G  G    +F+ D  S    ++E+N       P +T +            
Sbjct: 284 AAAVRAAKAVGYVGAGTVEFILDRKSHNFHFMEMNTRLQVEHP-ITEM-----------I 331

Query: 284 SFRELLLWMVEDASCLR 300
           +  +L+ W ++ A   +
Sbjct: 332 TGTDLVEWQIKVARGEK 348


>gi|86450081|gb|ABC96229.1| carbamoylphosphate synthetase [Apalocnemis sp. 'Chile']
          Length = 1283

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFSKYNVKIMGTPIQSIIETEDRKIFSERVAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALDAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|23502636|ref|NP_698763.1| pyruvate carboxylase [Brucella suis 1330]
 gi|148559515|ref|YP_001259623.1| pyruvate carboxylase [Brucella ovis ATCC 25840]
 gi|225628340|ref|ZP_03786374.1| pyruvate carboxylase [Brucella ceti str. Cudo]
 gi|254703551|ref|ZP_05165379.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|254708785|ref|ZP_05170596.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|256030311|ref|ZP_05443925.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
 gi|256061810|ref|ZP_05451945.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|256160484|ref|ZP_05458173.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|256255690|ref|ZP_05461226.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|256370187|ref|YP_003107698.1| pyruvate carboxylase [Brucella microti CCM 4915]
 gi|260167985|ref|ZP_05754796.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|261222898|ref|ZP_05937179.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|261316278|ref|ZP_05955475.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|261325813|ref|ZP_05965010.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|261754184|ref|ZP_05997893.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|261757428|ref|ZP_06001137.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|265987344|ref|ZP_06099901.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
 gi|265998857|ref|ZP_06111414.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|23348642|gb|AAN30678.1| pyruvate carboxylase [Brucella suis 1330]
 gi|148370772|gb|ABQ60751.1| pyruvate carboxylase [Brucella ovis ATCC 25840]
 gi|225616186|gb|EEH13234.1| pyruvate carboxylase [Brucella ceti str. Cudo]
 gi|256000350|gb|ACU48749.1| pyruvate carboxylase [Brucella microti CCM 4915]
 gi|260921482|gb|EEX88135.1| pyruvate carboxylase [Brucella ceti B1/94]
 gi|261295501|gb|EEX98997.1| pyruvate carboxylase [Brucella pinnipedialis B2/94]
 gi|261301793|gb|EEY05290.1| pyruvate carboxylase [Brucella neotomae 5K33]
 gi|261737412|gb|EEY25408.1| pyruvate carboxylase [Brucella sp. F5/99]
 gi|261743937|gb|EEY31863.1| pyruvate carboxylase [Brucella suis bv. 3 str. 686]
 gi|262553546|gb|EEZ09315.1| pyruvate carboxylase [Brucella ceti M490/95/1]
 gi|264659541|gb|EEZ29802.1| pyruvate carboxylase [Brucella pinnipedialis M292/94/1]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|17986550|ref|NP_539184.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|256045380|ref|ZP_05448274.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|260565727|ref|ZP_05836210.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|265991809|ref|ZP_06104366.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
 gi|17982157|gb|AAL51448.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. 16M]
 gi|260151100|gb|EEW86195.1| conserved hypothetical protein [Brucella melitensis bv. 1 str. 16M]
 gi|263002765|gb|EEZ15168.1| pyruvate carboxylase [Brucella melitensis bv. 1 str. Rev.1]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|62290650|ref|YP_222443.1| pyruvate carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82700564|ref|YP_415138.1| pyruvate carboxylase [Brucella melitensis biovar Abortus 2308]
 gi|189024862|ref|YP_001935630.1| pyruvate carboxylase [Brucella abortus S19]
 gi|237816151|ref|ZP_04595146.1| pyruvate carboxylase [Brucella abortus str. 2308 A]
 gi|254689938|ref|ZP_05153192.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|254698089|ref|ZP_05159917.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|254730973|ref|ZP_05189551.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|256258193|ref|ZP_05463729.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|260547114|ref|ZP_05822852.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260755473|ref|ZP_05867821.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|260758696|ref|ZP_05871044.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|260762530|ref|ZP_05874867.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260884493|ref|ZP_05896107.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|297249043|ref|ZP_06932751.1| pyruvate carboxylase [Brucella abortus bv. 5 str. B3196]
 gi|62196782|gb|AAX75082.1| Pyc, pyruvate carboxylase [Brucella abortus bv. 1 str. 9-941]
 gi|82616665|emb|CAJ11747.1| Biotin/lipoyl attachment:HMG-CoA lyase-like:Biotin-requiring
           enzyme, attachment site:Conserved carboxylase
           region:Carbamoyl-p [Brucella melitensis biovar Abortus
           2308]
 gi|189020434|gb|ACD73156.1| Pyc, pyruvate carboxylase [Brucella abortus S19]
 gi|237788613|gb|EEP62826.1| pyruvate carboxylase [Brucella abortus str. 2308 A]
 gi|260095479|gb|EEW79357.1| conserved hypothetical protein [Brucella abortus NCTC 8038]
 gi|260669014|gb|EEX55954.1| pyruvate carboxylase [Brucella abortus bv. 4 str. 292]
 gi|260672956|gb|EEX59777.1| pyruvate carboxylase [Brucella abortus bv. 2 str. 86/8/59]
 gi|260675581|gb|EEX62402.1| pyruvate carboxylase [Brucella abortus bv. 6 str. 870]
 gi|260874021|gb|EEX81090.1| pyruvate carboxylase [Brucella abortus bv. 9 str. C68]
 gi|297174176|gb|EFH33533.1| pyruvate carboxylase [Brucella abortus bv. 5 str. B3196]
          Length = 1158

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  +++++       +   +  L +      
Sbjct: 161 AAQIGYPLMLKASWGGGGRGMRAIRAEADLAREVMEAKREAKAAFGKDEVYLEKLVERAR 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 221 HVEVQILGDTYGNAVHLFERDCSIQRRNQKVVERAPAPYLNDAQRRELADYGLKIAHAT- 279

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  + K +++E+N +
Sbjct: 280 ---DYIGAGTVEFLMDADTGKFYFIEVNPR 306


>gi|330502938|ref|YP_004379807.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina NK-01]
 gi|328917224|gb|AEB58055.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina NK-01]
          Length = 662

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 77/250 (30%), Gaps = 20/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF--------NVLH---GNFGEDGLVQAILELLEIPYT 80
           +   I   +     L   + D           + +H   G   E+       E   I + 
Sbjct: 49  EAVCIGPAQVNQSYL---RIDAIIEAARKTGADAIHPGYGFLSENADFARACEAAGIVFI 105

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGG 136
              + A  L   K  SK  +   GVP  P         ++       I  P +IK   GG
Sbjct: 106 GPTVEAIHLMGSKRLSKIAMLEAGVPCIPGYEGAAQDDETLASEAERIGYPLMIKASAGG 165

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ ++ +   +   +  + S         E  ++   +    +           +  
Sbjct: 166 GGRGMRLVHESAELLGQIRTARSEAQNAFGSGELILERAVIRPRHVEIQVFGDQHGNIVY 225

Query: 197 SDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          P   +  ++ K + + A  A  ++   G    +FL D  S 
Sbjct: 226 LGERDCSVQRRHQKVVEEAPCPVMTPELRKAMGKAAVKAAASVNYVGAGTVEFLLDA-SG 284

Query: 256 KVFWLEINVQ 265
           + F+LE+N +
Sbjct: 285 EFFFLEMNTR 294


>gi|299535044|ref|ZP_07048370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298729540|gb|EFI70089.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 452

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+ +++  + +      +             Y++       
Sbjct: 148 AERLGYPIMLKASAGGGGIGMQLVENAEELAKAFEGNQKRAQSFFGDGTMYMERFIANPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    +   +  V         ++  +       P   I  +  +++   +  A + IG
Sbjct: 208 HVEVQIIADHQGNVVPLFERECSIQRRNQKVVEEAPSPFISQETREKMLEASVKAAKHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L D   +  ++LE+N +
Sbjct: 268 YVNAGTIEYLVDE-DQNFYFLEMNTR 292


>gi|138894614|ref|YP_001125067.1| pyruvate carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196247777|ref|ZP_03146479.1| pyruvate carboxylase [Geobacillus sp. G11MC16]
 gi|134266127|gb|ABO66322.1| Pyruvate carboxylase [Geobacillus thermodenitrificans NG80-2]
 gi|196212561|gb|EDY07318.1| pyruvate carboxylase [Geobacillus sp. G11MC16]
          Length = 1147

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 83/286 (29%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---------------------------VLAHLKP 51
                 A  + G +   I     VG                            ++   K 
Sbjct: 18  AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKA 77

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + +H   G   E+           I +         +  DK++++    + G+PV 
Sbjct: 78  HDV-DAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P     +      +        P +IK   GG   G+ +++    +     ++ S     
Sbjct: 137 PGSDGPVDGLEDVVRFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAA 196

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   +  + +   +   +   ++GD   ++  +            +             +
Sbjct: 197 FGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQ----RRHQKVVEVAPSVSL 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ + +   A    +++G       +FL      + +++E+N +
Sbjct: 253 SDELRQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|148261710|ref|YP_001235837.1| biotin carboxylation domain-containing protein [Acidiphilium
           cryptum JF-5]
 gi|146403391|gb|ABQ31918.1| urea carboxylase precursor [Acidiphilium cryptum JF-5]
          Length = 1162

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/179 (14%), Positives = 57/179 (31%), Gaps = 16/179 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+     +  +       S     +      Y++        + 
Sbjct: 155 IGYPVMLKSTAGGGGIGMAPCADEAELRARFAGISRLAQANFGEAALYLEKFVTAARHVE 214

Query: 184 DASLDVTEIAVPKSDFYSYE-LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                     V           + +        P  IP  +   ++  A    +++    
Sbjct: 215 VQIFGDGAGGVIALGARDCSLQRRNQKVVEETPPPGIPAPVLAAMEDAACGLARSVRYLS 274

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++D  ++  ++LE+N +     G+T            G    +L+ WMV  A+
Sbjct: 275 AGTVEFIYDAAAQTFYFLEVNTRLQVEHGVTE--------EVFGI---DLVEWMVRAAA 322


>gi|333030844|ref|ZP_08458905.1| Pyruvate carboxylase [Bacteroides coprosuis DSM 18011]
 gi|332741441|gb|EGJ71923.1| Pyruvate carboxylase [Bacteroides coprosuis DSM 18011]
          Length = 499

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 75/238 (31%), Gaps = 8/238 (3%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D+  ++  +      D      +G   E+           + +            D
Sbjct: 64  AEFLDI-ENLVGLARDNNIDAIHPG-YGYLSENPQFAVRCIEEGVIFIGPTPKVIKDMGD 121

Query: 93  KMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           K+ +K++ +   VP+       I      +     +  P +IK   GG   G+ ++ +  
Sbjct: 122 KVVAKEIAAKGNVPMLTGSEGAIHTLEEVVTVAKKVGYPLIIKACTGGGGRGMRIVHRQS 181

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +    + +SS           +++        +    +  T   V         ++   
Sbjct: 182 ELKQMYIAASSEAAIAFNNSAVFIEKYLENPRHIEVQIVADTHGNVVHLGERECSIQRKH 241

Query: 209 LNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  P+ I  D + K++   A    +  G   +   +FL D      +++E+N +
Sbjct: 242 QKLLEEAPSSILDDNLRKKITDAAISLAKEAGYSSLGTVEFLLDKKMN-FYFMEMNTR 298


>gi|332308284|ref|YP_004436135.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332175613|gb|AEE24867.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 683

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 79/277 (28%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLK---------------PDLAFNVLH----- 59
                   G++   +    D++   VLA  +                D      H     
Sbjct: 45  VIRTARKMGYRTVAVYSEADKNAAHVLAADQAVCVGPASVSESYLMIDNIIAAAHKTQAD 104

Query: 60  ------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                 G   E+           I +      A  L   K  SK  +   GVP  P    
Sbjct: 105 AIHPGYGFLSENPAFARACAAAGIQFIGPDASAIELMGSKRLSKVAMLDAGVPCIPGYQG 164

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +          +  P ++K   GG   G+ ++ +   +   +  + S         E
Sbjct: 165 AEQSDQVLIEKAADVGFPIMVKASAGGGGRGMRLVTEQGELAAQIKTARSEALSAFGSGE 224

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
             ++   L    +       ++            ++          P+    + + + + 
Sbjct: 225 LILERAVLAPRHIEIQIFADSQGNTVYLGERDCSIQRRHQKVVEEAPSPFVDEGLRERMG 284

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A +A G RG    +FL D      ++LE+N +
Sbjct: 285 QAAVSAAKACGYRGAGTVEFLVDSDKN-FYFLEMNTR 320


>gi|299768738|ref|YP_003730764.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter sp.
           DR1]
 gi|298698826|gb|ADI89391.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Acinetobacter sp.
           DR1]
          Length = 646

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/224 (15%), Positives = 71/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        +  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLAAQAEQVGFPIMVKASAGGGGRGMRLVQQASELVEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|260432987|ref|ZP_05786958.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260416815|gb|EEX10074.1| acetyl-CoA carboxylase, biotin carboxylase [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 449

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   I +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENSDFVQIVEDHGITFIGPTAEHIRIMGDKITAKDTMKELGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +    +    + + +     + + +
Sbjct: 137 GVPDLATAKRIGEEIGYPVIIKATAGGGGRGMKVAQTAAEMESAFMTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD   +   +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 253 ARIGKVCADAVAKINYIGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|134302449|ref|YP_001122419.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. tularensis WY96-3418]
 gi|134050226|gb|ABO47297.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. tularensis WY96-3418]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESSFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGSPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLINAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|327394161|dbj|BAK11583.1| phosphoribosylglycinamide formyltransferase 2 PurT [Pantoea
           ananatis AJ13355]
          Length = 392

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  V+A  KP      +
Sbjct: 24  GKEVALECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALAAVIAQEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         +P   +  L       +  + + ++                +
Sbjct: 84  EAIATEKLLELEQQGQHVVPTARAARLTMNREGIRRLAAEELALPT-SHYRFADSKDNFV 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 SAAAEIGFPCIVKPVMSSSGKGQSFIRDASQLEKA--WDYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSELALQRAQHIAETVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVVFSEVSPRPHDTGM 289


>gi|291617742|ref|YP_003520484.1| PurT [Pantoea ananatis LMG 20103]
 gi|291152772|gb|ADD77356.1| PurT [Pantoea ananatis LMG 20103]
          Length = 401

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  V+A  KP      +
Sbjct: 33  GKEVALECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALAAVIAQEKPHFVVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         +P   +  L       +  + + ++                +
Sbjct: 93  EAIATEKLLELEQQGQHVVPTARAARLTMNREGIRRLAAEELALPT-SHYRFADSKDNFV 151

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 152 SAAAEIGFPCIVKPVMSSSGKGQSFIRDASQLEKA--WDYAQQGGRAGAGRVIVEGVVKF 209

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A    +A+
Sbjct: 210 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSELALQRAQHIAETVVKAL 267

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 268 GGYGLFGVELFVC--GDEVVFSEVSPRPHDTGM 298


>gi|222834288|gb|EEE72765.1| predicted protein [Populus trichocarpa]
          Length = 846

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/295 (11%), Positives = 92/295 (31%), Gaps = 30/295 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  V+A  KP       
Sbjct: 464 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEVVAVEKPVGVIVQY 523

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +    E + I  T   ++ +A   ++ +          P   +       +
Sbjct: 524 GGQTPLKLALGLEKEGVPIIGTTPDMIDAAEDRERFQKLLHELGLRQPPNATARTEPEAL 583

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P V++P        + ++ + + +   + ++   ++   +L++ ++    + 
Sbjct: 584 EKAAGLGYPLVVRPSYVLGGRAMEIVHEQRDLERYMREAVKVSNDSPVLLDHFLSN-AIE 642

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           C V      +         +       +S  ++  + P  +  +   E++R       A+
Sbjct: 643 CDVDCVRDREGAVFIGGVMEHIEQAGVHSGDSACSLPPYYLKPETVAEIKRQTAAMANAL 702

Query: 239 GCRGISRSDFLF--DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
              G+    F          ++ LE+N +   T     P ++   G    ++   
Sbjct: 703 SVVGLMNVQFAIKETADGDVIYVLEVNPRASRT----VPFVSKATGIQLAKVAAR 753



 Score = 41.0 bits (94), Expect = 0.20,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 52/181 (28%), Gaps = 4/181 (2%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                    Q  +  P VI+P       G  +    +       +    +  ++LLIE+ 
Sbjct: 30  HSMDEAWAVQKEMGFPTVIRPSFTLGGTGGGIAYNPEEFETICKRGLEASPTNELLIEES 89

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +     D   I     +     +      +          +         
Sbjct: 90  LLGWKEYEMEVVRDKADNCIIICSIENLDPMGVHTGDSITVAPAQTLTDKEYQIMRNASL 149

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++   
Sbjct: 150 AVLREIGVDTGGSNVQFSVNPKDGRMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAK 205

Query: 292 M 292
           +
Sbjct: 206 L 206


>gi|224476229|ref|YP_002633835.1| pyruvate carboxylase [Staphylococcus carnosus subsp. carnosus
           TM300]
 gi|222420836|emb|CAL27650.1| pyruvate carboxylase [Staphylococcus carnosus subsp. carnosus
           TM300]
          Length = 1149

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V  +   D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIQVAKNAGVDAIHPG-YGFLSENETFARRCAEEGIIFIGPELKHLDMFGDKVKARAT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P               +     P +IK   GG   G+ ++  +  +     
Sbjct: 126 AIKADLPVIPGTDGPIEDYHKAAEFAEEAGYPLMIKATSGGGGKGMRIVNSEGELEEAFS 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +  +E  +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIEKYINEPKHIEVQIMGDSEGNIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+    + + + +   A      +G       +FL        +++E+N +
Sbjct: 246 PSVGLDESLRERICDAALQLMNNVGYVNAGTVEFLVSGDD--FYFIEVNPR 294


>gi|51945071|gb|AAU14218.1| VanB [Enterococcus faecium]
          Length = 223

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/187 (22%), Positives = 75/187 (40%), Gaps = 36/187 (19%)

Query: 30  GFKVSQIDVDRSVGLVLAHL----------------------------------KPDLAF 55
            F    I + ++    L                                     + D+AF
Sbjct: 1   KFDPHYIGITKNGVWKLCKKPCTEWEADSLPAILSPDRKTHGLLVMKESEYETRRIDVAF 60

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ V    ++++
Sbjct: 61  PVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIAVPEFQMIDK 120

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   ++ P  +KP + GSS G+  +   + +   +   ++  +  ++LIEQ + G 
Sbjct: 121 GDKPEAGALTYPVFVKPARSGSSFGLTKVNGTEELNAAI--EAAGQYDGKILIEQAISGC 178

Query: 176 ELTCGVM 182
           E+ C VM
Sbjct: 179 EVGCAVM 185


>gi|114566070|ref|YP_753224.1| pyruvate carboxylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337005|gb|ABI67853.1| pyruvate carboxylase, PYKA [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
          Length = 1144

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 83/285 (29%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLV--------------------------LAHLKPD 52
                 A ++ G +   +        +                          +  L   
Sbjct: 16  AIRIIRACQELGIRTVSVYSKEDKLALFRTKSDESYLIGNNKGPVEAYLSIEEIISLAIK 75

Query: 53  LAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
            A + +H   G   E+           I +            DK++SK +  S GVP  P
Sbjct: 76  KAVDAIHPGYGFLAENPEFAQKCIESGIEFIGPTPEMMDKLGDKIKSKLIAQSIGVPTIP 135

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
                I  ++  +        P ++K   GG   G+ +++ +  +  +          ++
Sbjct: 136 GVEKAIKSDQEAIKFAQKCGYPIMLKASAGGGGRGMRIVRNETDLLQEFHSAKNEAQKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +       +   V+GD   ++  +            +            KI 
Sbjct: 196 GIDDIFIEKYLESPKHIEVQVLGDNYGNIVYLYERDCSIQ----RRHQKVIEFAPAFKIS 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K +   A    +++  R     +FL D      +++E+N +
Sbjct: 252 AEQRKAICADALKIARSVNYRNAGTVEFLLDKQGNH-YFIEMNPR 295


>gi|304414171|ref|ZP_07395539.1| biotin carboxylase [Candidatus Regiella insecticola LSR1]
 gi|304283385|gb|EFL91781.1| biotin carboxylase [Candidatus Regiella insecticola LSR1]
          Length = 463

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 90/322 (27%), Gaps = 55/322 (17%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A +K  L    +       
Sbjct: 34  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGSAASVKSYLNIPAIISAAEIT 93

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 94  GATAIHPGYGFLSENADFAEQVEHSGFIFIGPTAETIRLMGDKVSAINAMKKAGVPCVPG 153

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +        I  P +IK   GG   G+ V+   + +   +  + +      
Sbjct: 154 SDGSLGNDAKKNQAVAKKIGYPVLIKASGGGGGRGMRVVHDAKDLEKAIDMTRTEAKAAF 213

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +    L   +            ++          PA     DI 
Sbjct: 214 NNDTVYMEKYLENPRHIEIQILADGKGNALYLAERDCSMQRRHQKVVEEAPAPGLSNDIR 273

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
             +      A   IG RG    +FL+   + + +++E+N +              +    
Sbjct: 274 SNIGECCVKACIDIGYRGAGTFEFLY--ENGEFYFIEMNTR----------IQVEHPVTE 321

Query: 281 --AGYSFRELLLWMVEDASCLR 300
              G    +L+   +  A+  R
Sbjct: 322 MITGI---DLIKEQLRIAAGQR 340


>gi|294809687|ref|ZP_06768376.1| biotin carboxylase [Bacteroides xylanisolvens SD CC 1b]
 gi|294443111|gb|EFG11889.1| biotin carboxylase [Bacteroides xylanisolvens SD CC 1b]
          Length = 537

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 85/278 (30%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH- 59
           +A+      SE +    + K    A      +   +    S    L   K        H 
Sbjct: 62  IAIF-----SEAD---RTAKHVLYA-----DEAYCVGPAASKESYLNIEKIIEVAKAAHA 108

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G   E+       +   I +            DK+ ++  +   GVPV P   
Sbjct: 109 DAIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQ 168

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            N  +++    +      P ++K   GG   G+ +I   + +      + S +       
Sbjct: 169 DNLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDD 228

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L      V         ++  +       P   +  ++ K++
Sbjct: 229 TVYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEETPSVFVTPELRKDM 288

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      ++LE+N +
Sbjct: 289 GEKAVAAAKAVNYIGAGTIEFLVDKHRN-YYFLEMNTR 325


>gi|258515796|ref|YP_003192018.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           acetoxidans DSM 771]
 gi|257779501|gb|ACV63395.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           acetoxidans DSM 771]
          Length = 447

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/317 (13%), Positives = 93/317 (29%), Gaps = 51/317 (16%)

Query: 19  GKACASALEDAGFKVSQID--VDRS-VGLVLAHLKPDLAFN------------------- 56
                 A  + G K   +    DR  + + LA     +                      
Sbjct: 14  ALRIIRACRELGIKTVAVYSEADRDSLPVKLADEAYCIGAPQPAKSYLSQANIISAALVS 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+       E  +I +    + A  +  +K  +++ +   GVPV P 
Sbjct: 74  GADAIHPGYGFLAENAGFAEKCESCKITFIGPSVKAIEMMGNKSVARETMIKEGVPVVPG 133

Query: 111 ILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  ++        +  P +IK   GG   G+ V      +   +  + S       
Sbjct: 134 TESIIKDINEALELANGMGYPVLIKASAGGGGRGMRVAHSKDDLERSIQAAQSEAQSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYK 225
             + Y++        +    L      +         ++  +       P+     ++  
Sbjct: 194 CADVYLEKYVEEPRHIEFQILGDKFDNIVYLGERDCSIQRRNQKVIEESPSTALTPELRS 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
            +   A  A +++G       +FL D  +   +++E+N       P         EM   
Sbjct: 254 RMGEAAVKAARSVGYHNAGTIEFLLD-RNNNFYFIEMNTRIQVEHP-------VTEM--V 303

Query: 281 AGYSFRELLLWMVEDAS 297
            G    +L+   +  A+
Sbjct: 304 TGI---DLIKEQIRLAA 317


>gi|256389396|ref|YP_003110960.1| carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
 gi|256355622|gb|ACU69119.1| Carbamoyl-phosphate synthase L chain ATP- binding [Catenulispora
           acidiphila DSM 44928]
          Length = 662

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/271 (14%), Positives = 78/271 (28%), Gaps = 30/271 (11%)

Query: 1   MAVLMGG-ISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH 59
           +AV +GG  S+E   S         A    G                     D      +
Sbjct: 52  VAVALGGSTSAE---SYLDAAKILDAARKTG--------------------ADAVHPG-Y 87

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SILVNR 115
           G   E+           I +      A      K  +K +  + GVPV P    +     
Sbjct: 88  GFLSENAGFAEACAQAGIVFVGPSPDAIRKMGIKHEAKAIAKAAGVPVLPDALLTTDEPD 147

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
               S   +  P ++K   GG   G+ ++   + +   +  +             +++  
Sbjct: 148 DWRRSSEGVGFPLLVKASAGGGGKGMRLVSSVEELENAVSGARREAAAAFGDGTVFLERY 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
                 +       T             ++          P+  +   +  ++  +A   
Sbjct: 208 LAASRHIEIQVFGDTHGNAVFYGERECSVQRRHQKVVEEAPSSAVGAAVRAKMGEVACAL 267

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +G  G    +FLFD      ++LE+N +
Sbjct: 268 VRELGYVGAGTVEFLFDDTDDSYYFLEMNTR 298


>gi|161343819|gb|ABI95362.2| pyruvate carboxylase-like protein [Rhizobium sp. TAL1145]
          Length = 1153

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 52/151 (34%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +
Sbjct: 151 EIHRLAAEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKL 210

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLA 234
                 +    L  T   V         ++  +       PA    D   +E+   +   
Sbjct: 211 VERARHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSDAQRQELADYSLKI 270

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A    G    ++L D  + K +++E+N +
Sbjct: 271 ARATNYVGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|145231034|ref|XP_001389781.1| urea carboxylase [Aspergillus niger CBS 513.88]
 gi|134055908|emb|CAK37386.1| unnamed protein product [Aspergillus niger]
          Length = 1238

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 83/274 (30%), Gaps = 28/274 (10%)

Query: 37  DVD-RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
            +D   +  +    K D      +G   E+           + +      +      K  
Sbjct: 61  YIDGEQIIDIAKKYKADAIIPG-YGFLSENADFARAASSAGLAFVGPSPESIEAFGLKHT 119

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ + +  GVP+ P     +      + +   +  P ++K   GG  +G++    ++ + 
Sbjct: 120 ARDLATKAGVPIVPGSKGLVKSEEEAVATAKELGFPVMLKATAGGGGMGLLTCNTEKEVR 179

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                  S     + +    +   Y     +   V G+           +        K 
Sbjct: 180 DAFATVKSRGGALFKNDGVFIERYYPSSHHIEVQVFGNGDGKAIYFGERECSIQRRHQKV 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                +  +       + + +   A    ++IG       ++L D  +   F+LE+N   
Sbjct: 240 IEECPSPFV--TRNPGLRERLGDAAVRLAESIGYGSAGTIEYLVDDETGAFFFLEMNT-- 295

Query: 267 GMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                     +    G +   +  +L+  M++ A
Sbjct: 296 ---------RLQVEHGITELCYDIDLVDLMLKQA 320


>gi|90413377|ref|ZP_01221370.1| acetyl-CoA carboxylase [Photobacterium profundum 3TCK]
 gi|90325619|gb|EAS42088.1| acetyl-CoA carboxylase [Photobacterium profundum 3TCK]
          Length = 447

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   I    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAIHSTADRDLKHVLLADETVCIGSAKSTESYLNVPRIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ +  +   +  +       +
Sbjct: 134 SDGPLDDDEARNKSFAKRIGFPVIIKASGGGGGRGMRVVRTEAELTEAIAMTRAEAKSFF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   +M D   +   +            +             I 
Sbjct: 194 NNDVVYMEKFLENPRHIEVQIMADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|260466757|ref|ZP_05812943.1| pyruvate carboxylase [Mesorhizobium opportunistum WSM2075]
 gi|259029487|gb|EEW30777.1| pyruvate carboxylase [Mesorhizobium opportunistum WSM2075]
          Length = 1152

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  ++ +        +   +  L +      
Sbjct: 156 AKEIGYPVMLKASWGGGGRGMRAIRAEADLAREVTEGKREAKAAFGKDEVYLEKLIERAR 215

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD   +   +            K         L      ++            
Sbjct: 216 HVEVQVLGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLEMSQREELCGHAL----KIA 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     G    +FL D  + K +++E+N +
Sbjct: 272 RETSYIGAGTVEFLQDADTGKFYFIEVNPR 301


>gi|87198630|ref|YP_495887.1| allophanate hydrolase subunit 2 [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87134311|gb|ABD25053.1| Allophanate hydrolase subunit 2 [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 1197

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/179 (17%), Positives = 61/179 (34%), Gaps = 16/179 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG  +G+ V + +  +       +    G+      +++       
Sbjct: 148 ANGIGYPVMLKATAGGGGIGMRVCEDEADVREGFSAVARQGLGNFGDAGVFLERYIRQAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           +         L+  +       PA + P  +  E+   A    QA G
Sbjct: 208 HIEVQIFGDGRGRIVALGERDCSLQRRNQKVVEEAPAPLLPPAVRSELIAAAIRLGQAAG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +FL+D    + F+LE+N +     G+T            G    +L+ WMV 
Sbjct: 268 YRSAGTVEFLYDAEREEFFFLEMNTRLQVEHGVTE--------EVMGV---DLVEWMVR 315


>gi|16126072|ref|NP_420636.1| urea amidolyase-like protein [Caulobacter crescentus CB15]
 gi|221234842|ref|YP_002517278.1| urea carboxylase [Caulobacter crescentus NA1000]
 gi|13423266|gb|AAK23804.1| urea amidolyase-related protein [Caulobacter crescentus CB15]
 gi|220964014|gb|ACL95370.1| urea carboxylase [Caulobacter crescentus NA1000]
          Length = 1207

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 16/183 (8%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P ++K   GG  +G+ V +  +++            G+      +++        
Sbjct: 148 QRIGFPVILKATAGGGGIGMRVCESAEAVEEAFAAVRRLATGNFSDGGVFLERYVHKARH 207

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240
           +           V         L+  +       PA   P      +   A    +A   
Sbjct: 208 IEVQVFGDGAGRVAALGERDCSLQRRNQKVVEETPAPGLPAATRTALLDAAVRLAKAANY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           R     +FL+D      F+LE+N +     G+T            G    +L+ WMV  A
Sbjct: 268 RSAGTVEFLYDADRDDFFFLEVNTRLQVEHGVTE--------QVTGV---DLVEWMVRGA 316

Query: 297 SCL 299
           +  
Sbjct: 317 AGD 319


>gi|307707119|gb|ADN87330.1| carbamoyl-phosphate synthetase/aspartate
           transcarbamoylase/dihydroorotase [Hydra magnipapillata]
          Length = 2213

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       ++ +                       V  V+   +PD  F 
Sbjct: 414 SGTQAIKALKEEHVHTVLVNPNIATVQTSKGLADKVYFLPVTFEYVSKVIECERPDGIFL 473

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   + + +   +    +   +   + D+    +K       V  C  
Sbjct: 474 SFGGQTALMCGLELKEKGVFDKYNVSVLGTPCESIEWTEDRKLFSNKMEEIGEHVAPCDV 533

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++ + + I  P +++       LG      D  +    L  +++    Q+LI++
Sbjct: 534 AYTVEQSIAAANKIGYPVLLRSAFALGGLGSGFASNDAELTK--LSLTAFAQSKQVLIDK 591

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  D Y  ++R+
Sbjct: 592 SLKGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNDEYNLLRRV 650

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S++ + +E+N +  ++  S     +   GY    +  
Sbjct: 651 AIKVIRHLGVIGECNIQYALNPKSKEYYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 706

Query: 291 WM 292
            +
Sbjct: 707 KL 708


>gi|296224667|ref|XP_002758150.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial [Callithrix jacchus]
          Length = 716

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ +Q     L  +              ++    T 
Sbjct: 195 HAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFSDDAVLIEKFVDTP 254

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          PA  I  ++ K++   A  A +A+
Sbjct: 255 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKPEVRKQLGEAAVRAAKAV 314

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F+ D      +++E+N +
Sbjct: 315 NYVGAGTVEFIMDSKHN-FYFMEMNTR 340


>gi|294501205|ref|YP_003564905.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
 gi|294351142|gb|ADE71471.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus megaterium QM
           B1551]
          Length = 450

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/151 (17%), Positives = 51/151 (33%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             M   + I  P +IK   GG   GI V K +Q +   +  +             Y++  
Sbjct: 143 DGMSIANDIGYPVIIKATAGGGGKGIRVAKNEQELIKGIAITQQEAATAFGNPGVYIEKF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
                 +    L  +             ++          P+    +  +E+    A  A
Sbjct: 203 IEDFRHVEIQVLADSHGNTVHLGERDCSIQRRLQKLIEETPSPALDEKTRELMGDAAVKA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            QA+   G    +F++D    K +++E+N +
Sbjct: 263 AQAVNYTGAGTVEFIYDYRENKFYFMEMNTR 293


>gi|237714144|ref|ZP_04544625.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|294646939|ref|ZP_06724558.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
 gi|229445968|gb|EEO51759.1| conserved hypothetical protein [Bacteroides sp. D1]
 gi|292637709|gb|EFF56108.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CC 2a]
          Length = 504

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/278 (15%), Positives = 85/278 (30%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH- 59
           +A+      SE +    + K    A      +   +    S    L   K        H 
Sbjct: 29  IAIF-----SEAD---RTAKHVLYA-----DEAYCVGPAASKESYLNIEKIIEVAKAAHA 75

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G   E+       +   I +            DK+ ++  +   GVPV P   
Sbjct: 76  DAIHPGYGFLSENATFARRCQEEGIIFIGPNPETMEAMGDKIAARIKMIEAGVPVVPGTQ 135

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            N  +++    +      P ++K   GG   G+ +I   + +      + S +       
Sbjct: 136 DNLKSVEEAVELCNKIGYPVMLKASMGGGGKGMRLIHSAEEVEEAYTTAKSESLSSFGDD 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L      V         ++  +       P   +  ++ K++
Sbjct: 196 TVYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEETPSVFVTPELRKDM 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      ++LE+N +
Sbjct: 256 GEKAVAAAKAVNYIGAGTIEFLVDKHRN-YYFLEMNTR 292


>gi|206890668|ref|YP_002249529.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742606|gb|ACI21663.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 471

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 83/315 (26%), Gaps = 51/315 (16%)

Query: 19  GKACASALEDAGFKVSQID---------VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQ 69
                 A ++ G +   I          V ++    L    P   +  ++G         
Sbjct: 14  ALRIIRACKELGIRTVAIYCEPDATARYVKKADEAYLVTPGPLRGYLNIYGIVELAKNAG 73

Query: 70  AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--------------------- 108
                    +       +        +    +S  +                        
Sbjct: 74  CDAIHPGYGFLAENPQFAEACAQAGITFIGPNSKAIRKMGLKDEARKIAQELGIPLLPGT 133

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
           P +      + S   I  P +IK   GG   G+ +   ++S+   +  + S         
Sbjct: 134 PPLNSLDEAVKSADEIGYPVMIKATAGGGGRGLRICYDEESLRRQIPIAMSEAKKAFGDE 193

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
             +++        +    +      +         ++        + P+ +  + I  E+
Sbjct: 194 RVFIEKYLERPHHIEIQIMADKYGNMVHLGERDCSIQRRHQKLIEIAPSLLLPERIRCEM 253

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------A 281
              A     A+G   +   +FL D      ++LE+N +              +       
Sbjct: 254 GEAAKKLAYAVGYDNVGTVEFLVDESLN-YYFLEMNTR----------IQVEHTITEEIT 302

Query: 282 GYSFRELLLWMVEDA 296
           G    +L+  M++ A
Sbjct: 303 GI---DLVQNMIKIA 314


>gi|291532008|emb|CBK97593.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium siraeum
           70/3]
          Length = 449

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 84/282 (29%), Gaps = 42/282 (14%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +        + A +  +                          
Sbjct: 14  AIRIIRACRELGVKTVAVYSTADKTALHAQIADEAVCIGPAPSKDSYLNSKALLAACEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     + +   I +   G  A     DK  +K+ +    VPV P 
Sbjct: 74  GAQAIHPGFGFLSENSHFVRLCDKCGIKFIGPGADAMDAMGDKANAKKTMIENDVPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +       +    I  P ++K   GG   GI +++K + +   +          + 
Sbjct: 134 SDGVVGTLEEAQEIAAKIGYPVMVKASAGGGGRGIRLVEKPEELEAAMTAAKQEAKQFFA 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + D  + +  V+   +   ++ D   +V  +            + +           +  
Sbjct: 194 NDDIYIEKFIVNPRHVEIQLLADEHGNVIYLGERDCSLQ----RRNQKVLEESPSPIMTE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           D+ + +   A  A +A G       +FL D      +++E+N
Sbjct: 250 DLRRRMGEAAVRAAKACGYANAGTVEFLVD-KDLNFYFMEMN 290


>gi|258674439|gb|ACV86992.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674441|gb|ACV86993.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674443|gb|ACV86994.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 216

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 19  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 78

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 79  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 136

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224
           V G E+ C V+G+++             Y     +  +            +PA +  +  
Sbjct: 137 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 196

Query: 225 KEVQRLAFLAHQAIGCRGIS 244
             +Q  A   ++A+GCRG++
Sbjct: 197 GRIQETAKKIYKALGCRGLA 216


>gi|258674435|gb|ACV86990.1| vancomycin resistance protein A [Enterococcus faecium]
 gi|258674437|gb|ACV86991.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 214

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/200 (26%), Positives = 92/200 (46%), Gaps = 9/200 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 17  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 76

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 77  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 134

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST-------HVLPAKIPLDIY 224
           V G E+ C V+G+++             Y     +  +            +PA +  +  
Sbjct: 135 VSGCEVGCAVLGNSAALAVGEVDQIRLQYGIFRIHQEVEPEKGSENAVITVPADLSAEER 194

Query: 225 KEVQRLAFLAHQAIGCRGIS 244
             +Q  A   ++A+GCRG++
Sbjct: 195 GRIQETAKKIYKALGCRGLA 214


>gi|1262411|emb|CAA94438.1| D-alanine:D-alanine ligase-related protein [Streptococcus equinus]
          Length = 211

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ 
Sbjct: 28  ETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIA 87

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V    ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++
Sbjct: 88  VPEFQMIDKGDKPEAGTLTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKI 145

Query: 167 LIEQYVDGIELTCGVM 182
           LIEQ + G E+ C VM
Sbjct: 146 LIEQAISGCEVGCAVM 161


>gi|86608860|ref|YP_477622.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. JA-2-3B'a(2-13)]
 gi|86557402|gb|ABD02359.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     + +      A     DK  +++ + + GVP  P    
Sbjct: 79  AIHPGYGFLAENAKFAEMCADHNLIFIGPSPEAMRKMGDKATARETMQAVGVPTVPGSRG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      +     I  P +IK   GG   G+ V +  Q +   L  +            
Sbjct: 139 LITSEEEAVKLAEKIGYPVIIKATAGGGGRGMRVARDAQELLKMLRTAQGEAQAAFGNGG 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L  ++  V         ++          P+      +   + 
Sbjct: 199 VYLEKFIERPRHVEFQILADSQGNVVHLYERDCSIQRRHQKLLEEAPSPALTASLRARMG 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A + +   G    +FL D  + + +++E+N +
Sbjct: 259 AAAVKAAKVVNYVGAGTVEFLLD-KNGQFYFIEMNTR 294


>gi|293369891|ref|ZP_06616464.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
 gi|292635068|gb|EFF53587.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides
           ovatus SD CMC 3f]
          Length = 504

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 47  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 107 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 167 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 226

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 227 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|307729075|ref|YP_003906299.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1003]
 gi|307583610|gb|ADN57008.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1003]
          Length = 407

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPDAPGHQVAHRSHVIDMTDRAALRALVEAERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIESDGIAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLEELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T             ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPSTGEVATYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|254427682|ref|ZP_05041389.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax sp. DG881]
 gi|196193851|gb|EDX88810.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax sp. DG881]
          Length = 448

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFNV---------- 57
                 A ++ G +   +    DR +  V LA            D   N+          
Sbjct: 14  ALRILRACKELGIRTVAVYSKPDRDLMHVRLADEAVCIGPASSTDSYLNIPALISAAEVT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ + + +   GVP  P 
Sbjct: 74  DADGIHPGYGFLAENADFAESVERSGFTFIGPKADTIRLMGNKVAAIEAMKKAGVPTVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   D         I  P +IK   GG   G+ V+++ + +   +  + S      
Sbjct: 134 SDGPIGDDDDASLAMAEQIGYPVIIKAAAGGGGRGMRVVEEAKHLLNAITLTRSEAKNAF 193

Query: 166 LLIEQYVD-----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                Y++        +   V+ D +     +            K         +P  + 
Sbjct: 194 GDATVYMEKFLQKPRHVEVQVLADGAGHAIHLGDRDCSLQRRHQKVVEEAPAPGIPQHLK 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ +        A + I  RG    +FL+     + +++E+N +
Sbjct: 254 DEVAQ----RCVDACKTINYRGAGTFEFLY--EDERFYFIEMNTR 292


>gi|194290732|ref|YP_002006639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cupriavidus
           taiwanensis LMG 19424]
 gi|193224567|emb|CAQ70578.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) [Cupriavidus
           taiwanensis LMG 19424]
          Length = 450

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V+  + ++   +  +       + + +  + +   +  
Sbjct: 149 ARRVGYPVIIKAAGGGGGRGMRVVHTEAALINAVNMTREEAGRAFGNPEVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D       +            K         +P +    + + +      A 
Sbjct: 209 HVEIQILADQHKQAIWLGERDCSMQRRHQKVIEEAPAPHIPRR----LIERIGDRCAEAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +G RG    +FL+   + + +++E+N +
Sbjct: 265 KKMGYRGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|182678321|ref|YP_001832467.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
 gi|182634204|gb|ACB94978.1| acetyl-CoA carboxylase, biotin carboxylase [Beijerinckia indica
           subsp. indica ATCC 9039]
          Length = 453

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/216 (14%), Positives = 70/216 (32%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     IL    I +         L  DK+ +K+     G+P  P     I   
Sbjct: 82  YGFLSENARFAEILAEHHIAFIGPKAEHIRLMGDKVEAKRTALRLGIPCVPGSDGAIRDE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +     +  P +IK   GG   G+ + +  + +PL L  +       +      L +
Sbjct: 142 AEALAVAKTLGFPVLIKAAAGGGGRGMKLARTAEDLPLALSTAKMEALSAFGDDSVYLEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   ++GD       +            +             +  +    +  
Sbjct: 202 YLEKPRHIEVQILGDGKGKAIHLGERDCSLQ----RRHQKVWEETPSPALNQEQRPRIGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A + +G  G    +FL+   + + +++E+N +
Sbjct: 258 ICAQAMRDLGYSGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|328860964|gb|EGG10068.1| hypothetical protein MELLADRAFT_103414 [Melampsora larici-populina
           98AG31]
          Length = 1179

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL ++  +   I+ +                       V  VL   +PD    
Sbjct: 105 SGSQAIKALRESNIETILINPNIATIQTSHHLASEVYFLPITADYVAWVLEKERPDGILL 164

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G    +         ILE L +    + I    +S D+    + ++   +P   S  
Sbjct: 165 TFGGQSALNVGIQLDKMGILERLGVQVLGTPIQTLIVSEDRDLFVKALNEIDIPAAHSTA 224

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG    + +  +    L + S +   Q+LIE+
Sbjct: 225 VSTVPDALAAAKEIGYPVILRSAFSLGGLGSGFAQNEDELRD--LSAKSLSLSPQVLIEK 282

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +  D Y  ++  
Sbjct: 283 SLKGW-KEVEYEVVRDAADNVIICCNMENFDPLGTHTGDSIVVAPSQTLSDDDYHMLRSA 341

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P  R+   +E+N +  ++  S     +   GY   
Sbjct: 342 AIKIVRHVGVVGECNVQYALNPHKREYMVIEMNAR--LSRSS--ALASKATGYPLA 393


>gi|317030601|ref|XP_001392857.2| aspartate carbamoyltransferase [Aspergillus niger CBS 513.88]
          Length = 2259

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 504 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYC 563

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 564 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 623

Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG         +    L   ++    Q+LIE+ +
Sbjct: 624 NLEEAMGVVESIGFPVIVRAAYALGGLGSGFADNMDELRE--LCVKAFAASPQVLIERSM 681

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 682 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 740

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 741 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 790


>gi|323345345|ref|ZP_08085568.1| carbamoyl-phosphate synthase, large subunit [Prevotella oralis ATCC
           33269]
 gi|323093459|gb|EFZ36037.1| carbamoyl-phosphate synthase, large subunit [Prevotella oralis ATCC
           33269]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIQKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + ++   +    S  
Sbjct: 88  SFGGQTALNCGVELFKSGVLDKYNVKVLGTPVQAIMDTEDRELFVEKLNEINIKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      +  +   +L   +++   Q+L+E+
Sbjct: 148 CENIVQARKAAADLGYPVIIRAAYALGGLGSGFCDNEDELN--VLAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPQSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|221104835|ref|XP_002168345.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 909

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 96/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       ++ +                       V  V+   +PD  F 
Sbjct: 350 SGTQAIKALKEEHVHTVLVNPNIATVQTSKGLADKVYFLPVTFEYVSKVIECERPDGIFL 409

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   + + +   +    +   +   + D+    +K       V  C  
Sbjct: 410 SFGGQTALMCGLELKEKGVFDKYNVSVLGTPCESIEWTEDRKLFSNKMEEIGEHVAPCDV 469

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++ + + I  P +++       LG      D  +    L  +++    Q+LI++
Sbjct: 470 AYTVEQSIAAANKIGYPVLLRSAFALGGLGSGFASNDAELTK--LSLTAFAQSKQVLIDK 527

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  D Y  ++R+
Sbjct: 528 SLKGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNDEYNLLRRV 586

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S++ + +E+N +  ++  S     +   GY    +  
Sbjct: 587 AIKVIRHLGVIGECNIQYALNPKSKEYYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 642

Query: 291 WM 292
            +
Sbjct: 643 KL 644


>gi|157964762|ref|YP_001499586.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia massiliae
           MTU5]
 gi|157844538|gb|ABV85039.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia massiliae
           MTU5]
          Length = 686

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 84  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 132

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 133 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAID------IAKEIGFPVIVKAAA 186

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 187 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 246

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 247 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 302

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 303 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIQIAAGEK 345


>gi|146278337|ref|YP_001168496.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17025]
 gi|145556578|gb|ABP71191.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17025]
          Length = 666

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 21/185 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +    Q        S +           +++        +
Sbjct: 150 EIGYPVMIKASAGGGGKGMRIAWNAQEAREGFESSKNEAANSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCR 241
               L                ++  +       P+    +  ++     A    +A+G  
Sbjct: 210 EIQVLADKHGNCVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQAVALAKAVGYA 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D      ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRV 315

Query: 296 ASCLR 300
           A+  +
Sbjct: 316 AAGEK 320


>gi|134077375|emb|CAK39989.1| unnamed protein product [Aspergillus niger]
          Length = 2277

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 504 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYC 563

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 564 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 623

Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG         +    L   ++    Q+LIE+ +
Sbjct: 624 NLEEAMGVVESIGFPVIVRAAYALGGLGSGFADNMDELRE--LCVKAFAASPQVLIERSM 681

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 682 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 740

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 741 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 790


>gi|148229681|ref|NP_001086068.1| methylcrotonoyl-CoA carboxylase 1 (alpha) [Xenopus laevis]
 gi|49256076|gb|AAH74151.1| MGC81895 protein [Xenopus laevis]
          Length = 716

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ + K ++     L  +       +N    L+ +   + 
Sbjct: 188 QAGRIGYPVMIKAVRGGGGKGMRIAKSEEDFFEQLESARREAKKSFNDDVMLIEKFVENP 247

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 248 RHVEVQVFGDQHGNAVYLFERDCSVQ----RRHQKIIEEAPGPGISPEVRRKLGEAAVRA 303

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 304 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 350

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 351 EWQLRVAAGEK 361


>gi|1814244|gb|AAB41852.1| D-Alanine:D-Alanine ligase [Streptococcus gordonii]
          Length = 197

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/149 (26%), Positives = 70/149 (46%), Gaps = 5/149 (3%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +   + +  +S P   KP   GSS+GI      + +   L  +    +  ++L+EQ V  
Sbjct: 51  QKIQEIEEKLSYPVFTKPSNMGSSVGISKSDNQEELRASLDLAF--KYDSRVLVEQGVTA 108

Query: 175 IELTCGVMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            E+  G++G+  +  +     V    FY Y+ KY     T  +PA++P  +   +++ A 
Sbjct: 109 REIEVGLLGNTDVKSSLPGEVVKDVAFYDYQAKYIDNKITMAIPAQLPEGVVNTMRQNAE 168

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
            A +AIG  G+SR DF +     +VF  E
Sbjct: 169 TAFRAIGGLGLSRCDFFYTE-DGQVFLNE 196


>gi|37521581|ref|NP_924958.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gloeobacter
           violaceus PCC 7421]
 gi|35212579|dbj|BAC89953.1| biotin carboxylase [Gloeobacter violaceus PCC 7421]
          Length = 449

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     I     + +      A  L  DK  ++  + + GVP  P  
Sbjct: 78  DAVHPG-YGFLSENERFAEICADHGLTFIGPSPRAMVLMGDKSTARDTMKAAGVPTVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I   +   ++   I  P +IK   GG   G+ +   ++ +   +  +          
Sbjct: 137 EGLIDSEQEAYEAAKAIGYPVMIKATAGGGGRGMRIAGNERDLIKMVQTAQREAEAAFGN 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L      V         ++          P+      + + 
Sbjct: 197 RGVYIEKYLEEPRHIEFQILADQHGNVVHLGERDCSIQRRHQKLLEESPSPFLTPAMRER 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A ++I   G    +FL D      +++E+N +
Sbjct: 257 MGEAALQAARSINYVGAGTIEFLVDKK-GDFYFMEMNTR 294


>gi|292572242|gb|ADE30157.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia prowazekii
           Rp22]
          Length = 665

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 29/205 (14%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWN 161
              +I   +  +D    I  P ++K   GG   G+ V+     +        L  ++S++
Sbjct: 138 YMGTIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   ++ D   +   +   +        ++          + I  
Sbjct: 198 DDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQ----RHHQKVIEEAPSSFITE 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           +I  E+ R      Q +G       +F+ D      ++LE+N +              + 
Sbjct: 254 NIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKN-FYFLEMNTR----------LQVEHP 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +++  M++ A+  +
Sbjct: 303 VTELITGI---DIVEEMIKIAAGKK 324


>gi|260427594|ref|ZP_05781573.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
 gi|260422086|gb|EEX15337.1| methylcrotonoyl-CoA carboxylase subunit alpha [Citreicella sp.
           SE45]
          Length = 666

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 21/181 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +   DQ        S +           +++        +
Sbjct: 150 EIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAASSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
               L          +     ++  +       P+     +  K +   A    +A+G  
Sbjct: 210 EIQVLCDAHGNGLWLNERECSIQRRNQKVVEEAPSPFLDPETRKAMGEQAVALAKAVGYT 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D      ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDGEKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRI 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|255727825|ref|XP_002548838.1| aspartate transcarbamylase [Candida tropicalis MYA-3404]
 gi|240133154|gb|EER32710.1| aspartate transcarbamylase [Candida tropicalis MYA-3404]
          Length = 2041

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 288 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTPEFVRKVIEHERPDGIYC 347

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
              G       +    E   +     G     +   + R     +   +    +    + 
Sbjct: 348 TFGGQTALSVGIALKDEFEGLGVKVLGTQIDTVITTEDRELFAAAMLEINEKCARSEAVN 407

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +  +++ + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 408 NVQEAIEAANAIGYPLIVRAAYALGGLGSGFADNEEELVD--LCNKAFATSPQVLVERSM 465

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 466 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 524

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 525 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 574


>gi|86450137|gb|ABC96257.1| carbamoylphosphate synthetase [Ocydromia sp. JKM-2006]
          Length = 1273

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+    +   I+ +                       V  V+   +P+    
Sbjct: 364 SGSQAIKALKQEKIQTILINPNIATVQTTKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 423

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + ++     V    +
Sbjct: 424 TFGGQTALNCGVELERAGVFKKYNVRIMGTPIQSIIDTEDRKIFAERIAEIGEKVAPSEA 483

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG       + +   LL   +  H +QL+I++
Sbjct: 484 VYSVREALDAAEKLEYPVMARAAFSLGGLGSGFANNKKELE--LLAQQALAHSNQLIIDK 541

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 542 SLQGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 600

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 601 AIKVIRHFGIIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 656

Query: 291 WM 292
            +
Sbjct: 657 KL 658


>gi|114762647|ref|ZP_01442081.1| propionyl-CoA carboxylase, alpha subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114544557|gb|EAU47563.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. HTCC2601]
          Length = 666

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/181 (13%), Positives = 52/181 (28%), Gaps = 21/181 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +   DQ        S +           +++        +
Sbjct: 150 EIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAASSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
               L          +     ++  +       P+     +  K +   A    +A+G  
Sbjct: 210 EIQVLCDAHGNGLWLNERECSIQRRNQKVVEEAPSPFLDPETRKAMGEQAVALAKAVGYT 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D      ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDGEKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRV 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|53714814|ref|YP_100806.1| pyruvate carboxylase subunit A [Bacteroides fragilis YCH46]
 gi|60682804|ref|YP_212948.1| putative biotin carboxylase 2 [Bacteroides fragilis NCTC 9343]
 gi|52217679|dbj|BAD50272.1| pyruvate carboxylase subunit A [Bacteroides fragilis YCH46]
 gi|60494238|emb|CAH09031.1| putative biotin carboxylase 2 [Bacteroides fragilis NCTC 9343]
 gi|301164273|emb|CBW23831.1| putative biotin carboxylase 2 [Bacteroides fragilis 638R]
          Length = 504

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH- 59
           +AV      SE +    + K    A      +   I    S    L   K        H 
Sbjct: 29  IAVF-----SEAD---RTAKHVLYA-----DEAYCIGPAASKESYLNIEKIIEVAKSCHA 75

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G   E+           I +            DK+ ++  +   GVPV P   
Sbjct: 76  DAIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQ 135

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            N  +++    +      P ++K   GG   G+ +I     +      + S +       
Sbjct: 136 DNLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDD 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L      V         ++  +       P   I  ++ +++
Sbjct: 196 TVYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEESPSVFITPELRRDM 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      ++LE+N +
Sbjct: 256 GEKAVAAAKAVNYIGAGTIEFLVDKHRN-YYFLEMNTR 292


>gi|88596179|ref|ZP_01099416.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|218562901|ref|YP_002344680.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|88191020|gb|EAQ94992.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360607|emb|CAL35404.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni NCTC 11168]
 gi|284926514|gb|ADC28866.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315928423|gb|EFV07736.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315928901|gb|EFV08159.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 305]
          Length = 443

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|301785297|ref|XP_002928062.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Ailuropoda melanoleuca]
 gi|281345165|gb|EFB20749.1| hypothetical protein PANDA_017961 [Ailuropoda melanoleuca]
          Length = 725

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 59/187 (31%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++ ++     L  +              ++    T 
Sbjct: 194 QAGRIGYPVMIKAVRGGGGKGMRIVRSEEEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  +I K++   A  A +A+
Sbjct: 254 RHVEVQVFGDYHGNAVYLFERDCSVQRRHQKIIEEAPGPGIKPEIRKKLGEAAVRAAKAV 313

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 314 NYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 360

Query: 294 EDASCLR 300
             A+  +
Sbjct: 361 RIAAGEK 367


>gi|255037015|ref|YP_003087636.1| Carbamoyl-phosphate synthase L chain ATP- binding [Dyadobacter
           fermentans DSM 18053]
 gi|254949771|gb|ACT94471.1| Carbamoyl-phosphate synthase L chain ATP- binding [Dyadobacter
           fermentans DSM 18053]
          Length = 501

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++D+ +  V A L  D      +G   E+      ++   + +      +  +   K+ 
Sbjct: 63  LNIDK-ILKVCAELGVDAIHPG-YGFLSENAGFAQKVKDAGLIFIGPSPESIEVMGSKLA 120

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K   S   +P+ P         D    I      P +IK   GG   G+ V++ +    
Sbjct: 121 AKHAASKYNIPMVPGTPDAIDNRDEAKRIASSIGYPVLIKASAGGGGKGMRVVENEAEFD 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             + ++ S           +++    +   +    L      +         ++      
Sbjct: 181 EQMDRAVSEAQAAFGDGSVFIEKYITSPKHVEIQVLGDQHGNIIHLFERECSVQRRHQKV 240

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+  I   I +E+ R A    ++    G    +F+ D      ++LE+N +
Sbjct: 241 VEEAPSISITPKIREEMGRCAVDVARSCHYYGAGTVEFIMDEDKN-FYFLEMNTR 294


>gi|206970978|ref|ZP_03231929.1| pyruvate carboxylase [Bacillus cereus AH1134]
 gi|229180222|ref|ZP_04307566.1| Pyruvate carboxylase [Bacillus cereus 172560W]
 gi|206733750|gb|EDZ50921.1| pyruvate carboxylase [Bacillus cereus AH1134]
 gi|228603431|gb|EEK60908.1| Pyruvate carboxylase [Bacillus cereus 172560W]
          Length = 1148

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVKKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|34398211|gb|AAQ67195.1| CAD [Wiedemannia sp. NCSU-99072188]
          Length = 1299

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLDYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     +     +    + I +   + D+      V      V    +
Sbjct: 428 AFGGQTALNCGIDLERAGVFSKYNVKILGTPIQSIIETEDRKIFADRVGEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVAEALQAAEVLGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNCEYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVVGECNIQYALNPESEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|12057069|emb|CAC19876.1| acetyl-CoA carboxylase [Brassica napus]
          Length = 1798

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 172 PTLPWSGSHVKIPPDSSLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 231

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +     +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 232 IRKVHNADEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 291

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++      +++   G +  ++L+   + + ++
Sbjct: 292 QRRHQKIIEEGPITVAPQ----ETIKKLEQAGRRLAKSVNYVGAATVEYLYSMDTGEYYF 347

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 348 LELNPR 353


>gi|114561734|ref|YP_749247.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            frigidimarina NCIMB 400]
 gi|114333027|gb|ABI70409.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            frigidimarina NCIMB 400]
          Length = 1517

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 84/234 (35%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  +    
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIHTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                VPV P            ++    I  P ++K ++GG   GI V+K+ + +     +
Sbjct: 1065 QKQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGFFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +++     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVIEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ + V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ELKQRVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|304382508|ref|ZP_07365003.1| carbamoyl-phosphate synthase, large subunit [Prevotella marshii DSM
           16973]
 gi|304336339|gb|EFM02580.1| carbamoyl-phosphate synthase, large subunit [Prevotella marshii DSM
           16973]
          Length = 1076

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGIVTVLINPNIATVQTSEGVADQIYFLPIQPYFVERVIQKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + +    +    S  
Sbjct: 88  AFGGQTALNCGVELYKSGVLEKYGVRVLGTQVKAIMDTEDRELFVEKLKEIDIKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CENIEQARKAAAELGYPIIIRAAYALGGLGSGFCDNEEELIK--LAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRTL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|288918224|ref|ZP_06412579.1| carbamoyl-phosphate synthase, large subunit [Frankia sp. EUN1f]
 gi|288350394|gb|EFC84616.1| carbamoyl-phosphate synthase, large subunit [Frankia sp. EUN1f]
          Length = 1091

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 84/302 (27%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG      L   G +V  +         D                V  ++   +PD    
Sbjct: 29  SGTQACRVLRAEGLRVILVNSNPATIMTDPEIADATYIEPITTEIVTKIIERERPDAILA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       LE   +    + I A     D+   K +V+S       S +
Sbjct: 89  TMGGQTALNTAVALHDAGVLEQYGVLLIGANIDAIRSGEDRQAFKDIVASVDGETARSAI 148

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +    S P VI+P       G       + +        + +   ++L+E+
Sbjct: 149 CTTVEECLAAADEFSYPVVIRPSYTLGGAGSGFAHDVEELRRMAAFGLAASPSTEVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SVLGWKEFELELMRDRADNVVVVCSIENIDPMGVHTGDSVTVAPALTLTDREYQRMRDMS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + +   +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMRAVGVDAGGCNIQFAVDPATGRQVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|254369743|ref|ZP_04985753.1| hypothetical protein FTAG_01076 [Francisella tularensis subsp.
           holarctica FSC022]
 gi|157122702|gb|EDO66831.1| hypothetical protein FTAG_01076 [Francisella tularensis subsp.
           holarctica FSC022]
          Length = 451

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKKDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317485017|ref|ZP_07943900.1| carbamoyl-phosphate synthase subunit L [Bilophila wadsworthia
           3_1_6]
 gi|316923755|gb|EFV44958.1| carbamoyl-phosphate synthase subunit L [Bilophila wadsworthia
           3_1_6]
          Length = 1236

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 95/282 (33%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKPD 52
            +    A+ +  F    +    D+D+                       + L++A  K  
Sbjct: 27  ARRICRAIRE-RFAAVPVMTATDIDKAAPAASSAQELLLLGSDPRAYLDLDLIIAKAK-Q 84

Query: 53  LAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   ED       E   I +  S   +  L  +K++ +++    G+PV P
Sbjct: 85  RGIIAIHPGWGFASEDERFPQKCEEAGITFIGSKADSMNLLGNKVQVRKIAKRLGIPVVP 144

Query: 110 S---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                +           I+ P ++K   GG   GI ++++   +     ++S+       
Sbjct: 145 GSEGAVDVPAARKVVDEITLPIMLKAEGGGGGRGIFLVREKSELEDAFFKASAMAQASFG 204

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDI 223
               YV+        +    +      V   D     ++ +      + P+       ++
Sbjct: 205 NPRLYVEKYLEQVRHIEIQVIADQHGNVFAFDERDCSVQRNHQKLVEITPSPWAGITPEL 264

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + ++  + +  + +G   ++  +FL  P   + + +E+N +
Sbjct: 265 RERLKEYSRMLVREVGYYSLATVEFLVTPQ-GEPYLIEVNTR 305


>gi|254933951|gb|ACT87584.1| carbamoylphosphate synthetase [Cisseps fulvicollis]
          Length = 975

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 376 SGSQAVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPKYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G       I +   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVKLEKSKIFQKYNVSILGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VNSVEEALVAARQIGYPVMSRSAFSLGGLGSGFANNEDEL--KALAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIQHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|218885772|ref|YP_002435093.1| ATP-grasp protein-like protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756726|gb|ACL07625.1| ATP-grasp protein-like protein [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 393

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 90/297 (30%), Gaps = 48/297 (16%)

Query: 19  GKACASALEDAGFKVSQID-----------------------VDR-----SVGLVLAHLK 50
                 +L   G +V   D                       VD       +  ++   +
Sbjct: 14  AYNICKSLARRGVEVVVADAQPHAMSFHSRHAVGTARYVSPFVDEHRFIDDLVRLVEQER 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+   VL   +        +   + +       L      + +R+        +P    
Sbjct: 74  IDVLVPVLEETYMVARHRDRLPSRVGLCLAGYRALVELHDKESLRTLANRLGVPMPETVP 133

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +     +      ++ P V+KP +GG    +  +     +     + ++       L ++
Sbjct: 134 LAAVLASPGMAEEMAYPQVVKPRQGGGGWAVEEVTTPDRLRALARERAASG----GLAQR 189

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            +DG  +   ++ DA   V        + Y +     +L  +   PA          ++ 
Sbjct: 190 KLDGDTVCVAMLYDAGKMVACDTYRVIEAYPWPYGQGTLRESFSCPA---------AEQG 240

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ-PGMTPVSIFPEMAAYAGYSFR 286
                 A+   G+  +DF+ +P S + F +++N +  G    S+        G  F 
Sbjct: 241 LRTLLDAMAWTGVCEADFIVEPDSGRAFLIDVNPRFWGSLAHSL------TRGMDFP 291


>gi|218128460|ref|ZP_03457264.1| hypothetical protein BACEGG_00028 [Bacteroides eggerthii DSM 20697]
 gi|317475715|ref|ZP_07934974.1| carbamoyl-phosphate synthase [Bacteroides eggerthii 1_2_48FAA]
 gi|217989351|gb|EEC55664.1| hypothetical protein BACEGG_00028 [Bacteroides eggerthii DSM 20697]
 gi|316908098|gb|EFV29793.1| carbamoyl-phosphate synthase [Bacteroides eggerthii 1_2_48FAA]
          Length = 1075

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++    PD    
Sbjct: 27  SGSQALKALREEGISSVLVNPNIATIQTSEGIADQVYFLPVTPYFVEEIIKKEHPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTNGVLDKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDALAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|50546845|ref|XP_500892.1| YALI0B14619p [Yarrowia lipolytica]
 gi|49646758|emb|CAG83143.1| YALI0B14619p [Yarrowia lipolytica]
          Length = 725

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 51/149 (34%), Gaps = 6/149 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQLLIEQYVDGIELTC 179
            +  P +IK + GG   G+ +++        L      +  + GD+ ++ +         
Sbjct: 175 KMGFPVLIKAVLGGGGKGMRIVESKADFQKQLASAKSEAKSSFGDERVLVEKYIKRPRHV 234

Query: 180 GVM-GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
            V               +        +     S          D  +++ + A  A +A+
Sbjct: 235 EVQVFADKFGNVVALGERDCSVQRRHQKVLEESPAPGLELYSADCRQKMYKQACDAARAV 294

Query: 239 GCRGISRSDFLFDPL--SRKVFWLEINVQ 265
              G    +F+FD    + + +++E+N +
Sbjct: 295 NYEGAGTVEFIFDRDSPNGQFYFMEMNTR 323


>gi|157828812|ref|YP_001495054.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165933538|ref|YP_001650327.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           rickettsii str. Iowa]
 gi|238651072|ref|YP_002916930.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           peacockii str. Rustic]
 gi|157801293|gb|ABV76546.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           rickettsii str. 'Sheila Smith']
 gi|165908625|gb|ABY72921.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           rickettsii str. Iowa]
 gi|238625170|gb|ACR47876.1| propionyl-CoA carboxylase biotin-containing subunit [Rickettsia
           peacockii str. Rustic]
          Length = 665

 Score = 51.0 bits (120), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAID------IAKEIGFPVIVKAAA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 166 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 282 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIQIAAGEK 324


>gi|226425253|gb|ACO53626.1| acetyl-CoA carboxylase 3 [Arachis hypogaea]
          Length = 2260

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P +    + +     A    +++   G +  ++LF   + + ++
Sbjct: 297 QRRHQKIIEEGPITVAPPQTVKQLEQ----AARRLAKSVNYVGAATVEYLFSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|226425249|gb|ACO53624.1| acetyl-CoA carboxylase 1 [Arachis hypogaea]
          Length = 2260

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 59/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P +    + +     A    +++   G +  ++LF   + + ++
Sbjct: 297 QRRHQKIIEEGPITVAPPQTVKQLEQ----AARRLAKSVNYVGAATVEYLFSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|294499143|ref|YP_003562843.1| putative phosphoribosylglycinamide synthetase [Bacillus megaterium
           QM B1551]
 gi|294349080|gb|ADE69409.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           QM B1551]
          Length = 420

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/266 (15%), Positives = 90/266 (33%), Gaps = 10/266 (3%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-- 89
               ID+  +    L  +K +   N   G           +  L       G+    +  
Sbjct: 50  NFIPIDLFHTPDKALEIIKAEHHKNPFDGIMTLYEPALEFVSQLTEELNLPGLSPFVISN 109

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             +K + ++V+    +       V          +  P V+KP  G SS G+      + 
Sbjct: 110 CRNKQKMREVLKDNDLNTPYFKEVENTEELKNLSLPYPVVVKPSNGFSSQGVSRANNKKE 169

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-----FYSYEL 204
           +   + +    N  D     +   G+ +   + G      T     +       +     
Sbjct: 170 LIDSIEKVRRVNEEDLSKFTKNKTGMVIEQFIDGPEFAIETFSVEGEVYVLSIGYKGNSK 229

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEIN 263
                   ++ PA++  ++++ + R A  A  A+G   G +  +   DP   K + +EI 
Sbjct: 230 GPFFEEGVYIAPAQLEENVWQSIAREAARAANALGIEDGPAHIELRLDPA-GKPYVIEIG 288

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
            + G + +S +  +    G ++ EL+
Sbjct: 289 ARIGGSGISHY-IVKESTGINYMELV 313


>gi|288560104|ref|YP_003423590.1| pyruvate carboxylase subunit A PycA [Methanobrevibacter ruminantium
           M1]
 gi|288542814|gb|ADC46698.1| pyruvate carboxylase subunit A PycA [Methanobrevibacter ruminantium
           M1]
          Length = 497

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
            +H   G   E+  +    E   I              DK+ SKQ++   GVP       
Sbjct: 77  AIHPGYGFLAENPELGRQCEKNGIKLIGPKGEHIEKMGDKITSKQLMKEAGVPVIEGTPE 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +IK   GG  +G+  +  ++ +   L  + S    +     
Sbjct: 137 GIDDVEEAKEIAEAIGYPVIIKASAGGGGIGMRAVYSEEELVRALEATQSVALKNFGDAT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            +++        +    L                ++          P   +  ++ + + 
Sbjct: 197 VFIEKYLEKPRHIEFQILADEYGNTIHVGDRECSIQRRHQKLLEEAPSPIMTEELRERMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A + IG       +FL+D  +   ++LE+N +
Sbjct: 257 ESAVKAAEYIGYNSAGTVEFLYD--NGDYYFLEMNTR 291


>gi|37731964|gb|AAP12665.1| putative biotin decarboxylase [Campylobacter jejuni subsp. jejuni
           81-176]
          Length = 394

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|15892882|ref|NP_360596.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia conorii
           str. Malish 7]
 gi|15620071|gb|AAL03497.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia conorii
           str. Malish 7]
          Length = 665

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 93/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAID------IAKEIGFPVIVKAAA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 166 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 282 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIQIAAGEK 324


>gi|253565916|ref|ZP_04843370.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_2_5]
 gi|251945020|gb|EES85458.1| pyruvate carboxylase subunit A [Bacteroides sp. 3_2_5]
          Length = 506

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/278 (15%), Positives = 83/278 (29%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH- 59
           +AV      SE +    + K    A      +   I    S    L   K        H 
Sbjct: 31  IAVF-----SEAD---RTAKHVLYA-----DEAYCIGPAASKESYLNIEKIIEVAKSCHA 77

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G   E+           I +            DK+ ++  +   GVPV P   
Sbjct: 78  DAIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQ 137

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            N  +++    +      P ++K   GG   G+ +I     +      + S +       
Sbjct: 138 DNLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDD 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L      +         ++  +       P   I  ++ +++
Sbjct: 198 TVYLEKFVEEPHHIEFQILGDKHGNIIHLCERECSVQRRNQKIVEESPSVFITPELRRDM 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      ++LE+N +
Sbjct: 258 GEKAVAAAKAVNYIGAGTIEFLVDKHRN-YYFLEMNTR 294


>gi|170691825|ref|ZP_02882989.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           graminis C4D1M]
 gi|170143109|gb|EDT11273.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia
           graminis C4D1M]
          Length = 407

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 34/270 (12%), Positives = 75/270 (27%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRSHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAVESDGIAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ D  +      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRSDADVEPAWQYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A                  ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAVDPSNGEVATYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|118497163|ref|YP_898213.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. novicida U112]
 gi|194323461|ref|ZP_03057238.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. novicida FTE]
 gi|254372530|ref|ZP_04988019.1| acetyl-CoA carboxylase [Francisella tularensis subsp. novicida
           GA99-3549]
 gi|118423069|gb|ABK89459.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           novicida U112]
 gi|151570257|gb|EDN35911.1| acetyl-CoA carboxylase [Francisella novicida GA99-3549]
 gi|194322316|gb|EDX19797.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella tularensis
           subsp. novicida FTE]
 gi|328675688|gb|AEB28363.1| Biotin carboxylase of acetyl-CoA carboxylase [Francisella cf.
           novicida 3523]
          Length = 451

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIKYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIADKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|58201631|gb|AAW66892.1| vancomycin resistance protein B [Enterococcus faecium]
          Length = 166

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ 
Sbjct: 6   ETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIA 65

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V    ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++
Sbjct: 66  VPEFQMIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKI 123

Query: 167 LIEQYVDGIELTCGVM 182
           LIEQ + G E+ C VM
Sbjct: 124 LIEQAISGCEVGCAVM 139


>gi|56707615|ref|YP_169511.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110670086|ref|YP_666643.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224456685|ref|ZP_03665158.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254370132|ref|ZP_04986138.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254874435|ref|ZP_05247145.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|56604107|emb|CAG45106.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110320419|emb|CAL08489.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151568376|gb|EDN34030.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           FSC033]
 gi|254840434|gb|EET18870.1| acetyl-CoA carboxylase [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|282158772|gb|ADA78163.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 451

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|328676632|gb|AEB27502.1| Biotin carboxylase of acetyl-CoA carboxylase [Francisella cf.
           novicida Fx1]
          Length = 451

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|296504442|ref|YP_003666142.1| pyruvate carboxylase [Bacillus thuringiensis BMB171]
 gi|296325494|gb|ADH08422.1| pyruvate carboxylase [Bacillus thuringiensis BMB171]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|298479589|ref|ZP_06997789.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
 gi|295085016|emb|CBK66539.1| biotin carboxylase [Bacteroides xylanisolvens XB1A]
 gi|298273979|gb|EFI15540.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           D22]
          Length = 511

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|228954223|ref|ZP_04116251.1| Pyruvate carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
 gi|228805543|gb|EEM52134.1| Pyruvate carboxylase [Bacillus thuringiensis serovar kurstaki str.
           T03a001]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228960209|ref|ZP_04121866.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
 gi|228799477|gb|EEM46437.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pakistani str.
           T13001]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229071446|ref|ZP_04204668.1| Pyruvate carboxylase [Bacillus cereus F65185]
 gi|228711737|gb|EEL63690.1| Pyruvate carboxylase [Bacillus cereus F65185]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229192155|ref|ZP_04319123.1| Pyruvate carboxylase [Bacillus cereus ATCC 10876]
 gi|228591362|gb|EEK49213.1| Pyruvate carboxylase [Bacillus cereus ATCC 10876]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|218236059|ref|YP_002368748.1| pyruvate carboxylase [Bacillus cereus B4264]
 gi|229152146|ref|ZP_04280340.1| Pyruvate carboxylase [Bacillus cereus m1550]
 gi|218164016|gb|ACK64008.1| pyruvate carboxylase [Bacillus cereus B4264]
 gi|228631338|gb|EEK87973.1| Pyruvate carboxylase [Bacillus cereus m1550]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|30022035|ref|NP_833666.1| pyruvate carboxylase [Bacillus cereus ATCC 14579]
 gi|229047633|ref|ZP_04193221.1| Pyruvate carboxylase [Bacillus cereus AH676]
 gi|229081199|ref|ZP_04213709.1| Pyruvate carboxylase [Bacillus cereus Rock4-2]
 gi|229111417|ref|ZP_04240969.1| Pyruvate carboxylase [Bacillus cereus Rock1-15]
 gi|229129224|ref|ZP_04258197.1| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4]
 gi|229146518|ref|ZP_04274889.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST24]
 gi|29897591|gb|AAP10867.1| Pyruvate carboxylase [Bacillus cereus ATCC 14579]
 gi|228637151|gb|EEK93610.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST24]
 gi|228654461|gb|EEL10326.1| Pyruvate carboxylase [Bacillus cereus BDRD-Cer4]
 gi|228672033|gb|EEL27325.1| Pyruvate carboxylase [Bacillus cereus Rock1-15]
 gi|228702243|gb|EEL54719.1| Pyruvate carboxylase [Bacillus cereus Rock4-2]
 gi|228723709|gb|EEL75066.1| Pyruvate carboxylase [Bacillus cereus AH676]
          Length = 1148

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|120555718|ref|YP_960069.1| carbamoyl-phosphate synthase L chain, ATP-binding [Marinobacter
           aquaeolei VT8]
 gi|120325567|gb|ABM19882.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Marinobacter aquaeolei VT8]
          Length = 652

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ +++ +  +  ++ +       ++   + ++ +  ++  
Sbjct: 148 AQDIDYPLMLKASAGGGGRGMRLVESESELANNIKRARSEAKQAFGDDELIIEKAVIEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            +             +  ++ K +   A  A 
Sbjct: 208 HVEIQVFADHHGNAVYLGERDCSVQ----RRHQKVVEEAPSPFVTPELRKAMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A G  G    +FL D   R  ++LE+N +
Sbjct: 264 LACGYEGAGTVEFLVD-KDRNFYFLEMNTR 292


>gi|261402992|ref|YP_003247216.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           vulcanius M7]
 gi|261369985|gb|ACX72734.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           vulcanius M7]
          Length = 501

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 43/318 (13%), Positives = 94/318 (29%), Gaps = 54/318 (16%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFN----- 56
                 A  + G K   +      RS+   LA                  D   N     
Sbjct: 14  AIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGEAPAIKSYLNIDAILNVAEKA 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      ++     +      A      K+ +K+++   GVP+ P 
Sbjct: 74  KVDAIHPGYGFLAENAKFARAVKKAGFEFIGPNPEAIEAMGSKINAKKIMKKAGVPLIPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               I      ++    I  P V+K   GG  +G+ V    + +   +  + +       
Sbjct: 134 SDGAIEDIDEAIEIAEQIGFPVVVKASAGGGGMGMSVAYSKEELREVIESARNIAKSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      +         ++          P   +  ++ +
Sbjct: 194 DPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
            + + A  A +AI        +FL+   +   ++LE+N +              +     
Sbjct: 254 RMGKAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNTR----------IQVEHTVTEQ 301

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+  M++ A+
Sbjct: 302 ITGI---DLVKAMIKIAA 316


>gi|227502802|ref|ZP_03932851.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49725]
 gi|227076532|gb|EEI14495.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49725]
          Length = 1159

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 72/234 (30%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +       + D  +   +G   E   +    E   I +         L+ DK  
Sbjct: 85  LDI-EEIIRAAKKSEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPGTLDLTGDKSA 142

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P                     S P  +K + GG   G+  ++ +  +  
Sbjct: 143 AVNAAKEAGLPTLQDSEPTTDIDKLVADAGDFSFPVFVKAVSGGGGRGMRYVESESELRE 202

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 203 RAAEASREAEAAFGDGSVYLETAVINPQHIEVQVLADSQGNVIHLFERDCSVQRRHQKVV 262

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA     ++ + + + A    + I   G    +FL D     V ++E+N +
Sbjct: 263 EIAPAPSLDPELRERICQDAVNFCEHINYEGAGTVEFLVDERGNHV-FIEMNPR 315


>gi|222445056|ref|ZP_03607571.1| hypothetical protein METSMIALI_00673 [Methanobrevibacter smithii
           DSM 2375]
 gi|261350375|ref|ZP_05975792.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Methanobrevibacter smithii DSM 2374]
 gi|222434621|gb|EEE41786.1| hypothetical protein METSMIALI_00673 [Methanobrevibacter smithii
           DSM 2375]
 gi|288861158|gb|EFC93456.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Methanobrevibacter smithii DSM 2374]
          Length = 497

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 81/280 (28%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKP-DLAF-- 55
                 A  +   +   I  D                          L   K  D+A   
Sbjct: 14  AIRVMRACRELDIQSVAIYSDADTTSLYTNYADESYPLGNPSPAKSYLNIEKIIDIALES 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
             + +H   G   E+       E   I              DK+ SK ++   GVP    
Sbjct: 74  GADAIHPGYGFLAENPKFGEACEKNGIKLIGPTGDVIHQMGDKITSKALMKKAGVPVIEG 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +       +    I  P ++K   GG  +G+  + ++  +   +  + S    +  
Sbjct: 134 TPEGVSDIEEAKEIARQIGYPVIVKASAGGGGIGMRAVYEEDELVRAIESTQSVASTNFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      V         ++          P   +  ++  
Sbjct: 194 DSTVFIEKYLEKPRHIEFQLLADEHGNVIHVADRECSIQRRHQKLLEEAPSPIMTEELRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           E+   A  A + IG       +FL+D  + + ++LE+N +
Sbjct: 254 EMGASAVKAAEYIGYTSAGTVEFLYD--NGQYYFLEMNTR 291


>gi|148642825|ref|YP_001273338.1| pyruvate carboxylase subunit A [Methanobrevibacter smithii ATCC
           35061]
 gi|148551842|gb|ABQ86970.1| pyruvate carboxylase (acetyl-CoA/biotin carboxylase), subunit A,
           PycA [Methanobrevibacter smithii ATCC 35061]
          Length = 497

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/280 (14%), Positives = 81/280 (28%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKP-DLAF-- 55
                 A  +   +   I  D                          L   K  D+A   
Sbjct: 14  AIRVMRACRELDIQSVAIYSDADTTSLYTNYADESYPLGNPSPAKSYLNIEKIIDIALES 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
             + +H   G   E+       E   I              DK+ SK ++   GVP    
Sbjct: 74  GSDAIHPGYGFLAENPKFGEACEKNGIKLIGPTGDVIHQMGDKITSKALMKKAGVPVIEG 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +       +    I  P ++K   GG  +G+  + ++  +   +  + S    +  
Sbjct: 134 TPEGVSDIEEAKEIARQIGYPVIVKASAGGGGIGMRAVYEEDELVRAIESTQSVASTNFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      V         ++          P   +  ++  
Sbjct: 194 DSTVFIEKYLEKPRHIEFQLLADEHGNVIHVADRECSIQRRHQKLLEEAPSPIMTEELRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           E+   A  A + IG       +FL+D  + + ++LE+N +
Sbjct: 254 EMGASAVKAAEYIGYTSAGTVEFLYD--NGQYYFLEMNTR 291


>gi|86450097|gb|ABC96237.1| carbamoylphosphate synthetase [Trichinomyia flavipes]
          Length = 1287

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPDYVEQVIRSERPHGILL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   I    + I +   + D+    + V      V    +
Sbjct: 428 TFGGQTALNCGVELERAGIFKKYNIRIMGTPIDSIIDTEDRKIFAERVGKIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +S P + +       LG      ++ +   +L   +  H +QL+I++
Sbjct: 488 VYSVDEALRAADKLSYPVMARAAFSLGGLGSGFANNEEELR--ILAHQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVIAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|77164564|ref|YP_343089.1| Acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           ATCC 19707]
 gi|254433885|ref|ZP_05047393.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           AFC27]
 gi|76882878|gb|ABA57559.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrosococcus oceani ATCC 19707]
 gi|207090218|gb|EDZ67489.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus oceani
           AFC27]
          Length = 446

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVL--------------------------AHLK 50
                 A  + G K   I  +VDR +  VL                          A + 
Sbjct: 14  ALRILRACWELGLKTVAIHSEVDRELKHVLLADETVCIGPAASSQSYLNIPAVISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ + + + S GVP  P 
Sbjct: 74  DAVAIHPGYGFLSENADFAERVEQSGFVFIGPRPETIRLIGDKVSAIKAMKSSGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +   +     I  P +IK   GG   G+ V+  +  +P  +  + S      
Sbjct: 134 SEGPLGEDDEENIAIAKEIGYPVMIKASGGGGGRGMRVVHSEAHLPTAISLTRSEASAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  +  
Sbjct: 194 GNDMVYMEKYLENPRHVEFQVLADTHGQAIYLGERDCSMQRRHQKVVEEAPAPGITNEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +  +   A + +G RG    +FL+     + +++E+N +
Sbjct: 254 QRMGEICTEACRKMGYRGAGTFEFLY--QDGEFYFIEMNTR 292


>gi|34581416|ref|ZP_00142896.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           sibirica 246]
 gi|28262801|gb|EAA26305.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia
           sibirica 246]
          Length = 665

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 29/205 (14%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWN 161
              +I   +  +D    I  P ++K   GG   G+ V+     +        L  ++S++
Sbjct: 138 YMGTINDVKQAIDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   ++ D   +   +   +        ++          + I  
Sbjct: 198 DDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQ----RHHQKVIEEAPSSFITE 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           DI +E+ R      Q +G       +F+ D      ++LE+N +              + 
Sbjct: 254 DIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKN-FYFLEMNTR----------LQVEHP 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +++  M++ A+  +
Sbjct: 303 VTELITGI---DIVEEMIQIAAGEK 324


>gi|297846662|ref|XP_002891212.1| F5J5.19 [Arabidopsis lyrata subsp. lyrata]
 gi|297337054|gb|EFH67471.1| F5J5.19 [Arabidopsis lyrata subsp. lyrata]
          Length = 2252

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 60/174 (34%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              S  V     +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 187 PPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 246

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V+ +            K      
Sbjct: 247 LFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKYRNVSALHSRDCSVQRRHQKIIEEGP 306

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 307 ITVAPP----ETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 356


>gi|253570380|ref|ZP_04847789.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           1_1_6]
 gi|251840761|gb|EES68843.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           1_1_6]
          Length = 1073

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEINMKTPISQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKL-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|241895144|ref|ZP_04782440.1| carbamoyl-phosphate synthase large subunit [Weissella
           paramesenteroides ATCC 33313]
 gi|241871640|gb|EER75391.1| carbamoyl-phosphate synthase large subunit [Weissella
           paramesenteroides ATCC 33313]
          Length = 1058

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 90/302 (29%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G++V  ++ +                       +  +L   +PD    
Sbjct: 29  SGTQAAMSLKEEGYEVVLVNSNPATIMTDSEIADEVYIEPLSVEFLSRILRKERPDAILP 88

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G  G +   Q           + +  T    +  A   +  ++     +  VP    
Sbjct: 89  TLGGQTGLNMAKQLAETGILDELGIILLGTKLSAIEEAEDREAFKNLMTRLNEPVPESMI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +        P +++P       G  +   +  +          +   Q+LIEQ
Sbjct: 149 AVTVAQALSFAETNGYPVIVRPAYTLGGTGGGIANNEAELQTIAANGLELSPVTQVLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   I     +F    +          +      ++    +  
Sbjct: 209 SIAGYKEIEFEVMRDAADNALIVASMENFDPVGIHTGDSIVVAPVQTLSDRELQMM-RDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S     +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQMALDPNSFNYDIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 95/290 (32%), Gaps = 32/290 (11%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D SV   L    L  +   NV+H            G  
Sbjct: 579 KAIQAAGYEAIIMNSNPETVSTDFSVSDKLYFEPLTLEDVLNVVHLEQPLGVVVQFGGQT 638

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +     +   + I  T    L  A   ++        +   P+  +       + +  
Sbjct: 639 AINLAEPLVDAGVNILGTSVANLNRAEDREEFDQVIKQLALAQPMGKTATTIAEALHAAE 698

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P +++P        + ++  +  +   + ++   +H   +LI+ Y+ G E    V+
Sbjct: 699 TVGYPVLVRPSYVLGGRAMEIVNNEVELQDYMGRAVQVSHDHPVLIDSYLVGSEAEVDVL 758

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
            D    V     P    +       S +S  V P +     + +E+   +    +++   
Sbjct: 759 SDGETVVI----PGIMEHIERAGVHSGDSMSVYPTQTLSDKVKQEIITASIALAKSLDTI 814

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G+    F+    +   + +E+N +   T     P ++        +L   
Sbjct: 815 GLMNVQFVIHEDT--AYVIEVNPRASRT----VPFISKVTHLKLAQLATR 858


>gi|187934722|ref|YP_001885025.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum B
           str. Eklund 17B]
 gi|187722875|gb|ACD24096.1| ATP domain protein [Clostridium botulinum B str. Eklund 17B]
          Length = 315

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 91/302 (30%), Gaps = 52/302 (17%)

Query: 21  ACASALEDAGFKVSQID----------VDR--------------SVGLVLAHLKPDLAFN 56
              + L+   + V  +D          VD+               +  +    K DL   
Sbjct: 13  QLINHLKKNNY-VIGVDCGDLAPAIQFVDKFYKIHKYNEKEYIDDLIKICKKEKVDLLIP 71

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +    F      +   + +      S      +  DK ++ +      +    S   N  
Sbjct: 72  LYEKEFLILCENRGNFKDVATILLLSNKDIIEICNDKWKTYKFFLDNNINTPISYCKNDI 131

Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               +     ++  P++IKP  G  S  +  I   + +           + D  +I+QYV
Sbjct: 132 EQLLECQKVKIMQFPFIIKPRDGMGSSNVFKINSKKELE------FFKEYVDNYIIQQYV 185

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           DGIE T  V+ D + +V  I   +           S            LD+ ++      
Sbjct: 186 DGIEYTVDVLCDLNGNVISIVPRERIEVRSGEVCKSKAVYDKRIINSTLDLCQK------ 239

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
                +   G      +    + ++ ++EIN + G       P      G  + +     
Sbjct: 240 -----LKGIGPLTIQCILT-KNNEIKFIEINPRFG----GGVPLSFE-CGVDYGKFFNMF 288

Query: 293 VE 294
           VE
Sbjct: 289 VE 290


>gi|159043944|ref|YP_001532738.1| acetyl-CoA carboxylase biotin carboxylase subunit [Dinoroseobacter
           shibae DFL 12]
 gi|157911704|gb|ABV93137.1| acetyl-CoA carboxylase [Dinoroseobacter shibae DFL 12]
          Length = 448

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 69/217 (31%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I++   + +         +  DK+ +K+ + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVQDHGLTFIGPTAEHIRVMGDKITAKETMKNLGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P ++K   GG   G+ + K  + +      + S         +
Sbjct: 137 GVPDLETARRVAGEIGYPVIVKATAGGGGRGMKLAKTAEDLDEAFQTARSEGKAAFGNPD 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            Y++    T   +        +            L+          P   I  +    + 
Sbjct: 197 VYLEKYLSTPRHIEVQVFGDGKGGAVHLGERDCSLQRRHQKVFEEAPSPVIDAETRARIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +    A   I   G    +FL+   + + +++E+N +
Sbjct: 257 KTCAEAVARIDYAGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|114762105|ref|ZP_01441573.1| carbamoyl-phosphate synthase large subunit [Pelagibaca bermudensis
           HTCC2601]
 gi|114545129|gb|EAU48132.1| carbamoyl-phosphate synthase large subunit [Roseovarius sp.
           HTCC2601]
          Length = 1110

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 92/315 (29%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +         +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLKLEEMGVLEKFGVEMIGAKREAIEMAEDRALFREAMDRIGLENPAATI 148

Query: 113 VNRFTMDS---------------QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           V   T                     +  P +I+P       G  V    +         
Sbjct: 149 VTAPTKPDGKADLDAGVAQALEALETVGLPAIIRPAFTLGGTGGGVAYNREDYIHYCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +  +Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MDASPVNQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P + ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAVNPENGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/316 (15%), Positives = 104/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 630 RLYFEPLTFEHVMEILRVEQSNGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD--SQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + +V+   +    + + +           I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQALVNELELKQPKNGIASTDAQALAIADSIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+DG +EL    + D         +   +       
Sbjct: 750 MAHLERYIKEAVVVSGDSPVLLDSYLDGAVELDVDALCDGEAVHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  D+   V+       +A+   G+    F       +++ +E+N +
Sbjct: 807 HSGDSACSLPPYSLSDDVIARVKVQTEALAKALNVVGLMNVQFAV--KDDEIYLIEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|1772309|dbj|BAA07013.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
          Length = 198

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 27/175 (15%), Positives = 60/175 (34%), Gaps = 5/175 (2%)

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
               S  V     +     +      + S  ++  P +IK   GG   GI  +  D  + 
Sbjct: 1   IPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVR 60

Query: 152 LDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               Q      G  + I +       L   ++ D   +V+ +            K     
Sbjct: 61  ALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSVQRRHQKIIEEG 120

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              V P     +  K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 121 PITVAPP----ETVKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 171


>gi|114798818|ref|YP_759373.1| carbamoyl-phosphate synthase large subunit [Hyphomonas neptunium
           ATCC 15444]
 gi|114738992|gb|ABI77117.1| carbamoyl-phosphate synthase, large subunit [Hyphomonas neptunium
           ATCC 15444]
          Length = 1092

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 40/320 (12%), Positives = 92/320 (28%), Gaps = 49/320 (15%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G++V  ++ +                       V  ++A  +PD    
Sbjct: 29  SGVQAVKALKAEGYRVILVNSNPATIMTDPELADATYIEPILPEVVEKIIAAERPDALLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS---------- 102
            + G        D     ILE   +    +   A  ++ D+   ++ +            
Sbjct: 89  TMGGQTALNCALDLHYAGILEKYGVELIGAKAEAIEMAEDRKLFREAMDRLGLENPRAAI 148

Query: 103 ----------CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
                       +     I   R  MD+   +  P +I+P       G  +    +    
Sbjct: 149 IASPEIRGEDGKIKSYDRITGLRQAMDALETVGLPAIIRPAFTLGGTGGGIAYNVEEYEE 208

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 + +   Q+LI++ + G +     +   + D   I     +     +      + 
Sbjct: 209 ICRSGLAASPNAQILIDESLLGWKEYEMEVVRDTADNCIIICSIENIDPMGVHTGDSITV 268

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                    +          +  +     G S   F  +P   ++  +E+N  P ++  S
Sbjct: 269 APALTLTDKEYQVMRNASIAVLREIGVETGGSNVQFAVNPKDGRLIVIEMN--PRVSRSS 326

Query: 273 IFPEMAAYAGYSFRELLLWM 292
                +   G+   ++   +
Sbjct: 327 --ALASKATGFPIAKIAAKL 344



 Score = 43.3 bits (100), Expect = 0.047,   Method: Composition-based stats.
 Identities = 27/163 (16%), Positives = 59/163 (36%), Gaps = 10/163 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTC 179
            + I  P +++P        + + + D+ +     ++   +    L I++Y  D IE+  
Sbjct: 728 ANEIGYPVMLRPSFVLGGRAMEIARNDEDLRKFAAEALRVSGDASLFIDRYLSDAIEVDV 787

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +  D+ K +   A     A+ 
Sbjct: 788 DAICDGKTVHVAGIMEHIEEAG---VHSGDSACALPPFTLSQDLQKRLGEQAAQLAMALN 844

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
            RG+    F       +++ LE N +   T     P +A   G
Sbjct: 845 VRGLINIQFAV--KGEEIYVLEANPRASRT----VPFVAKAVG 881


>gi|153951320|ref|YP_001397623.1| biotin carboxylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938766|gb|ABS43507.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 443

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|125975129|ref|YP_001039039.1| hypothetical protein Cthe_2647 [Clostridium thermocellum ATCC
           27405]
 gi|256003215|ref|ZP_05428207.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281418450|ref|ZP_06249469.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|125715354|gb|ABN53846.1| protein of unknown function DUF201 [Clostridium thermocellum ATCC
           27405]
 gi|255992906|gb|EEU02996.1| protein of unknown function DUF201 [Clostridium thermocellum DSM
           2360]
 gi|281407534|gb|EFB37793.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum JW20]
 gi|316939296|gb|ADU73330.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Clostridium thermocellum DSM 1313]
          Length = 308

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 52/312 (16%), Positives = 103/312 (33%), Gaps = 43/312 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSV-----------------G 43
           + ++ G           SG +    L+  G+ V+ +    +                   
Sbjct: 5   IGLIAG----------HSGDSLTDILKRKGYLVAVVGGAENEPGMDKADFVLVGDLSKHK 54

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
            ++   +   A  V+ G      ++ A         T+     S L+ DK++ K+ ++  
Sbjct: 55  EIINFFREHEADKVIIGTGHRKAILLAKALEKNGFKTNINYSKSLLAKDKIKFKKELAKL 114

Query: 104 GVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            +     +  +     S       IS P V+K       +  +       +   + +  +
Sbjct: 115 KIATPEYLSFDSNEDVSIDETVSKISIPCVVKSAVDA--VQPVKANSVAELKEAVEKVRA 172

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                 +LIE+Y+ G + T  V  D     +           Y+LK      +  +    
Sbjct: 173 T--NTAVLIEEYIKGNDCTVAVESDGKNVRSLGVTYYCKAKEYKLKGFEGAYSKKMSEDK 230

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--PVSIFPEM 277
             +I K          + +G  G+ R DF+ D  S KV+ LE+N    +T    S +P  
Sbjct: 231 ESEICKIAV----QIVEQLGFTGLLRIDFIVDECSEKVYVLELNTV-IVTGYKGSAYPF- 284

Query: 278 AAYAGYSFRELL 289
               G    E++
Sbjct: 285 FKKQGIDIAEVM 296


>gi|302756307|ref|XP_002961577.1| hypothetical protein SELMODRAFT_77392 [Selaginella moellendorffii]
 gi|300170236|gb|EFJ36837.1| hypothetical protein SELMODRAFT_77392 [Selaginella moellendorffii]
          Length = 747

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 46/281 (16%), Positives = 88/281 (31%), Gaps = 37/281 (13%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
                   G K   +  D     +      +  F                          
Sbjct: 52  IIKTARSLGLKTVAVYSDADRNSLHVRRADEAVFIGPASAQLSYLSTTSILDAARRTGAD 111

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+           I +      A +L  DK  SK+++S   VPV P    
Sbjct: 112 AIHPGYGFLSENSKFAQACHESGITFIGPSAAAISLMGDKSASKKLMSGANVPVVPGYHG 171

Query: 114 NRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQ 165
           +  + +        I  P +IKP+ GG   G+ ++         +   L +S++     +
Sbjct: 172 DDQSHELLQSEADRIGYPVLIKPVLGGGGKGMRIVHSRDEFLDSLRSALRESAAAFGDTR 231

Query: 166 LLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           +LIE+Y+     +   + GD   +V  +            K        ++       I 
Sbjct: 232 VLIEKYIAQPRHIEVQIFGDRFGNVVHLFERDCSVQRRHQKIIEEAPAPLMSDDFRNSIG 291

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     A ++   I C      +F+ D  +   F++E+N +
Sbjct: 292 QAAVNAAKVSSFVICCCCELPVEFIVDTATGDFFFMEMNTR 332


>gi|290463425|sp|C8ZF72|HFA1_YEAS8 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
           Includes: RecName: Full=Biotin carboxylase; Flags:
           Precursor
          Length = 2273

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|290463423|sp|C7GRE4|HFA1_YEAS2 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
           Includes: RecName: Full=Biotin carboxylase; Flags:
           Precursor
          Length = 2273

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|290463422|sp|B3LM95|HFA1_YEAS1 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
           Includes: RecName: Full=Biotin carboxylase; Flags:
           Precursor
          Length = 2273

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|282919303|ref|ZP_06327038.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C427]
 gi|282317113|gb|EFB47487.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C427]
          Length = 451

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|259148793|emb|CAY82038.1| Hfa1p [Saccharomyces cerevisiae EC1118]
          Length = 2123

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|257884762|ref|ZP_05664415.1| pyruvate carboxylase [Enterococcus faecium 1,231,501]
 gi|257820600|gb|EEV47748.1| pyruvate carboxylase [Enterococcus faecium 1,231,501]
          Length = 1142

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 43/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L      V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDIHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|256271632|gb|EEU06674.1| Hfa1p [Saccharomyces cerevisiae JAY291]
          Length = 2123

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|209523217|ref|ZP_03271773.1| acetyl-CoA carboxylase, biotin carboxylase [Arthrospira maxima
           CS-328]
 gi|209496368|gb|EDZ96667.1| acetyl-CoA carboxylase, biotin carboxylase [Arthrospira maxima
           CS-328]
          Length = 453

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQRFGVPTIPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  ++        I  P +IK   GG   G+ +++  + +P     +            
Sbjct: 138 LVTNDKAAQKIAQKIGYPVIIKATAGGGGRGMRLVRSAEELPKLFSAAQGEAEAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++          P+     ++ +++ 
Sbjct: 198 LYIEKFIECPRHIEFQILADGFGNVIHLGERDCSIQRRHQKLLEEAPSPALNPELRRKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A  +I   G    +FL D    K +++E+N +
Sbjct: 258 EAAVKAAASINYTGAGTVEFLLDRH-GKFYFMEMNTR 293


>gi|190408433|gb|EDV11698.1| protein HFA1 [Saccharomyces cerevisiae RM11-1a]
          Length = 2123

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +           Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNQDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|148241440|ref|YP_001226597.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. RCC307]
 gi|147849750|emb|CAK27244.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Synechococcus sp. RCC307]
          Length = 449

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +++    +          +    G+  L  +       
Sbjct: 149 AGSMGYPVMIKATAGGGGRGMRLVRSADELENLFKAAQGEAEAAFGNPGLYMEKFITRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  +  + +   A  A + 
Sbjct: 209 HVEVQILADRFG--NVVHLGERDCSIQRRHQKLLEEAPSPGLDPETRRRMGEAAVAAAKT 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D  S + +++E+N +
Sbjct: 267 IGYEGAGTVEFLLDA-SGEFYFMEMNTR 293


>gi|86151130|ref|ZP_01069346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|121612451|ref|YP_001000965.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni 81-176]
 gi|157415553|ref|YP_001482809.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|315124744|ref|YP_004066748.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|85842300|gb|EAQ59546.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|87249678|gb|EAQ72637.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|157386517|gb|ABV52832.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|307748193|gb|ADN91463.1| Biotin carboxylase [Campylobacter jejuni subsp. jejuni M1]
 gi|315018466|gb|ADT66559.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315932441|gb|EFV11384.1| Acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 327]
          Length = 443

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|15924516|ref|NP_372050.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu50]
 gi|15927107|ref|NP_374640.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus N315]
 gi|21283208|ref|NP_646296.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MW2]
 gi|49483776|ref|YP_041000.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA252]
 gi|49486363|ref|YP_043584.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MSSA476]
 gi|57650483|ref|YP_186412.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus COL]
 gi|82751131|ref|YP_416872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus RF122]
 gi|87160215|ref|YP_494171.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_FPR3757]
 gi|88195333|ref|YP_500137.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus NCTC 8325]
 gi|148268011|ref|YP_001246954.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394078|ref|YP_001316753.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221643|ref|YP_001332465.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. Newman]
 gi|156979845|ref|YP_001442104.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu3]
 gi|161509755|ref|YP_001575414.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH1516]
 gi|253314896|ref|ZP_04838109.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. CF-Marseille]
 gi|253732180|ref|ZP_04866345.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253733224|ref|ZP_04867389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|255006313|ref|ZP_05144914.2| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus Mu50-omega]
 gi|257425652|ref|ZP_05602076.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257428313|ref|ZP_05604711.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257430950|ref|ZP_05607330.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257433639|ref|ZP_05609997.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257436552|ref|ZP_05612596.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M876]
 gi|257793603|ref|ZP_05642582.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9781]
 gi|258411097|ref|ZP_05681377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A9763]
 gi|258420099|ref|ZP_05683054.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9719]
 gi|258437359|ref|ZP_05689343.1| biotin carboxylase [Staphylococcus aureus A9299]
 gi|258443565|ref|ZP_05691904.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A8115]
 gi|258446772|ref|ZP_05694926.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6300]
 gi|258448686|ref|ZP_05696798.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6224]
 gi|258451184|ref|ZP_05699219.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A5948]
 gi|258453503|ref|ZP_05701481.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A5937]
 gi|262049110|ref|ZP_06021987.1| acetyl-CoA carboxylase [Staphylococcus aureus D30]
 gi|262051193|ref|ZP_06023417.1| acetyl-CoA carboxylase [Staphylococcus aureus 930918-3]
 gi|269203156|ref|YP_003282425.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282893028|ref|ZP_06301262.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A8117]
 gi|282904109|ref|ZP_06311997.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282905936|ref|ZP_06313791.1| acetyl-CoA carboxylase biotin carboxylase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282908846|ref|ZP_06316664.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282911165|ref|ZP_06318967.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282914334|ref|ZP_06322120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924628|ref|ZP_06332296.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282924775|ref|ZP_06332442.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9765]
 gi|282928998|ref|ZP_06336585.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A10102]
 gi|283958291|ref|ZP_06375742.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|284024586|ref|ZP_06378984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 132]
 gi|293510425|ref|ZP_06669131.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M809]
 gi|293530965|ref|ZP_06671647.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|294848557|ref|ZP_06789303.1| acetyl-CoA carboxylase [Staphylococcus aureus A9754]
 gi|295406649|ref|ZP_06816454.1| acetyl-CoA carboxylase [Staphylococcus aureus A8819]
 gi|295428105|ref|ZP_06820737.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296275117|ref|ZP_06857624.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MR1]
 gi|297207754|ref|ZP_06924189.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297245768|ref|ZP_06929633.1| acetyl-CoA carboxylase [Staphylococcus aureus A8796]
 gi|297590929|ref|ZP_06949567.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300911835|ref|ZP_07129278.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|198443111|pdb|2VPQ|A Chain A, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
 gi|198443112|pdb|2VPQ|B Chain B, Crystal Structure Of Biotin Carboxylase From S. Aureus
           Complexed With Amppnp
 gi|13701325|dbj|BAB42619.1| acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus
           N315]
 gi|14247297|dbj|BAB57688.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|21204648|dbj|BAB95344.1| acetyl-CoA carboxylase accC [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49241905|emb|CAG40599.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|49244806|emb|CAG43257.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MSSA476]
 gi|57284669|gb|AAW36763.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus COL]
 gi|82656662|emb|CAI81088.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
 gi|87126189|gb|ABD20703.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202891|gb|ABD30701.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|147741080|gb|ABQ49378.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Staphylococcus aureus subsp. aureus
           JH9]
 gi|149946530|gb|ABR52466.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus JH1]
 gi|150374443|dbj|BAF67703.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus str. Newman]
 gi|156721980|dbj|BAF78397.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368564|gb|ABX29535.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253723969|gb|EES92698.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus USA300_TCH959]
 gi|253728764|gb|EES97493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus TCH130]
 gi|257271346|gb|EEV03492.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 55/2053]
 gi|257275154|gb|EEV06641.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 65-1322]
 gi|257278380|gb|EEV09016.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 68-397]
 gi|257281732|gb|EEV11869.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus E1410]
 gi|257283903|gb|EEV14026.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M876]
 gi|257787575|gb|EEV25915.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9781]
 gi|257840247|gb|EEV64711.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A9763]
 gi|257843810|gb|EEV68204.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9719]
 gi|257848564|gb|EEV72552.1| biotin carboxylase [Staphylococcus aureus A9299]
 gi|257850971|gb|EEV74914.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A8115]
 gi|257854347|gb|EEV77296.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6300]
 gi|257857964|gb|EEV80853.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A6224]
 gi|257861239|gb|EEV84052.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A5948]
 gi|257864234|gb|EEV86984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus A5937]
 gi|259160830|gb|EEW45850.1| acetyl-CoA carboxylase [Staphylococcus aureus 930918-3]
 gi|259162779|gb|EEW47344.1| acetyl-CoA carboxylase [Staphylococcus aureus D30]
 gi|262075446|gb|ACY11419.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus ED98]
 gi|282313463|gb|EFB43858.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus C101]
 gi|282321515|gb|EFB51840.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282324860|gb|EFB55170.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282327110|gb|EFB57405.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282331228|gb|EFB60742.1| acetyl-CoA carboxylase biotin carboxylase [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282589405|gb|EFB94496.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A10102]
 gi|282592782|gb|EFB97788.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9765]
 gi|282595727|gb|EFC00691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282764346|gb|EFC04472.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A8117]
 gi|283790440|gb|EFC29257.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|285817209|gb|ADC37696.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus aureus
           04-02981]
 gi|290920233|gb|EFD97299.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291466789|gb|EFF09309.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus M809]
 gi|294824583|gb|EFG41006.1| acetyl-CoA carboxylase [Staphylococcus aureus A9754]
 gi|294968396|gb|EFG44420.1| acetyl-CoA carboxylase [Staphylococcus aureus A8819]
 gi|295128463|gb|EFG58097.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|296887771|gb|EFH26669.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus ATCC 51811]
 gi|297177419|gb|EFH36671.1| acetyl-CoA carboxylase [Staphylococcus aureus A8796]
 gi|297575815|gb|EFH94531.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus MN8]
 gi|300886081|gb|EFK81283.1| acetyl-CoA carboxylase subunit A [Staphylococcus aureus subsp.
           aureus TCH70]
 gi|312438005|gb|ADQ77076.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312829916|emb|CBX34758.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ECT-R 2]
 gi|315129804|gb|EFT85794.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS03]
 gi|315195428|gb|EFU25815.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS00]
 gi|315198779|gb|EFU29107.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus CGS01]
 gi|320140588|gb|EFW32442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA131]
 gi|320144125|gb|EFW35894.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus MRSA177]
 gi|329728360|gb|EGG64797.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21189]
          Length = 451

 Score = 50.6 bits (119), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|329727570|gb|EGG64026.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21172]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|284051849|ref|ZP_06382059.1| acetyl-CoA carboxylase biotin carboxylase subunit [Arthrospira
           platensis str. Paraca]
 gi|291571309|dbj|BAI93581.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Arthrospira
           platensis NIES-39]
          Length = 453

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQRFGVPTIPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  ++        I  P +IK   GG   G+ +++  + +P     +            
Sbjct: 138 LVTNDKAAQKIAQKIGYPVIIKATAGGGGRGMRLVRSAEELPKLFSAAQGEAEAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++          P+     ++ +++ 
Sbjct: 198 LYIEKFIECPRHIEFQILADGFGNVIHLGERDCSIQRRHQKLLEEAPSPALNPELRRKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A  +I   G    +FL D    K +++E+N +
Sbjct: 258 EAAVKAAASINYTGAGTVEFLLDRH-GKFYFMEMNTR 293


>gi|283470805|emb|CAQ50016.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ST398]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|282916797|ref|ZP_06324555.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283770603|ref|ZP_06343495.1| accC acetyl-CoA carboxylase biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus H19]
 gi|282319284|gb|EFB49636.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus D139]
 gi|283460750|gb|EFC07840.1| accC acetyl-CoA carboxylase biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus H19]
 gi|323440424|gb|EGA98136.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus O11]
 gi|323443198|gb|EGB00816.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus O46]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|265766617|ref|ZP_06094446.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
 gi|263252994|gb|EEZ24470.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_16]
          Length = 506

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/278 (15%), Positives = 83/278 (29%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH- 59
           +AV      SE +    + K    A      +   I    S    L   K        H 
Sbjct: 31  IAVF-----SEAD---RTAKHVLYA-----DEAYCIGPAASKESYLNIEKIIEVAKSCHA 77

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G   E+           I +            DK+ ++  +   GVPV P   
Sbjct: 78  DAIHPGYGFLSENATFARRCREEGITFIGPDPETMEAMGDKISARIKMIEAGVPVVPGTQ 137

Query: 113 VNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
            N  +++    +      P ++K   GG   G+ +I     +      + S +       
Sbjct: 138 DNLKSVEEAVELCNQIGYPVMLKASMGGGGKGMRLIHHADEVAEAYTTAKSESLSSFGDD 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L      V         ++  +       P   I  ++ +++
Sbjct: 198 TVYLEKFVEEPHHIEFQILGDKHGNVIHLCERECSVQRRNQKIVEESPSVFITPELRRDM 257

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      ++LE+N +
Sbjct: 258 GEKAVAAAKAVNYIGAGTIEFLVDKHRN-YYFLEMNTR 294


>gi|227327742|ref|ZP_03831766.1| carbamoyl phosphate synthase large subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 868

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 382 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 441

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 442 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 501

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 502 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 561

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 562 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 618

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 619 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 661


>gi|227114249|ref|ZP_03827905.1| carbamoyl phosphate synthase large subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 581

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/289 (11%), Positives = 90/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 95  ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTFEDVLEIVRIEKPKGVIVQYGGQTP 154

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 155 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKARG 214

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 215 IGYPLVVRPSYVLGGRAMEIVYDEIDLRRYFQNAVSVSNDAPVLLDRFLDDAIEVDVDAI 274

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 275 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 331

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 332 LMNVQFAV--KDNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 374


>gi|163788913|ref|ZP_02183358.1| carbamoyl-phosphate synthase large subunit [Flavobacteriales
           bacterium ALC-1]
 gi|159876150|gb|EDP70209.1| carbamoyl-phosphate synthase large subunit [Flavobacteriales
           bacterium ALC-1]
          Length = 951

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGSQALRSLREDGIETILINSNPATIMTDPTMADHVYLLPLNTKSIIKILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      +  ++      I A  ++ D+ + ++++   GV +    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFDVDIIGVDIDAINITEDREQFRELMLKIGVGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G   + K++     L +    +   +++I+
Sbjct: 149 TATSYLKGKEIAQEFGFPLVIRASYTLGGAGASFVYKEEDFDELLTRGLEVSPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             K    
Sbjct: 209 KALIGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITLAPAMTLSDKTFQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P     +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRSIGDFAGGCNVQFAVSPDDAEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 AAKL 328



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 82/254 (32%), Gaps = 10/254 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIQHEKPEGVIVQLGGQTALKLAEKLERYGVKIMGTSFKALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    ++   P           +    +++ P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSNILKENNIPYPEFDVAESADEALAIADVLNFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   ++       G++LL++ Y+DG  +          D     +   +       +
Sbjct: 740 KEELEAHVIDLLKSIPGNKLLLDHYLDG-AIEAEADAICDADGNVYIIGIMEHIEPCGIH 798

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +   + ++++       +A+   G+    F        V+ +E N + 
Sbjct: 799 SGDSNALLPAFNLGDLVMQQIKDHTHTIARALNTVGLINIQFAI--KDEVVYIIEANPRA 856

Query: 267 GMTPVSIFPEMAAY 280
             T     P +A  
Sbjct: 857 SRT----VPFIAKA 866


>gi|208778956|ref|ZP_03246302.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella novicida
           FTG]
 gi|254373991|ref|ZP_04989473.1| acetyl-CoA carboxylase [Francisella novicida GA99-3548]
 gi|151571711|gb|EDN37365.1| acetyl-CoA carboxylase [Francisella novicida GA99-3548]
 gi|208744756|gb|EDZ91054.1| acetyl-CoA carboxylase, biotin carboxylase [Francisella novicida
           FTG]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPPAPNLSYLNIQAIITAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ + + +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAESIEIMGDKVEAIRYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEKIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        E             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGEGNAVYLFERDCSTQRRHQKVIEEAPAIGLSDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVSACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|332878448|ref|ZP_08446169.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332683543|gb|EGJ56419.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGVRSVLVNPNIATIQTSEGIADEVYFLPVTPYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYRNGVLKEYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPVSKA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +I+       LG  +   ++        + ++    Q+L+E+
Sbjct: 147 VENMEDALAAAREIGYPVMIRSAYALGGLGSGICPDEERFIELAGSAFTFAP--QVLVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SKKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|328542024|ref|YP_004302133.1| pyruvate carboxylase protein [polymorphum gilvum SL003B-26A1]
 gi|326411774|gb|ADZ68837.1| Probable pyruvate carboxylase protein [Polymorphum gilvum
           SL003B-26A1]
          Length = 1147

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/151 (13%), Positives = 56/151 (37%), Gaps = 9/151 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P ++K   GG   G+ VI  ++S+  +++ +       +   +  L +     
Sbjct: 149 QAAAIGYPLMLKASWGGGGRGMRVIPDEKSLLKEVVAAKREARAAFGKDEIYLEKLVERA 208

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   ++GD   ++  +            +             +  +  +++   A   
Sbjct: 209 RHVEVQILGDGHGNLVHLYERDCSIQ----RRHQKVVERAPAPYLVPEDRRKLAGYALAI 264

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +++  RG    +FL D  +  ++++E+N +
Sbjct: 265 CESVSYRGAGTVEFLMDADTGAIYFIEVNPR 295


>gi|315127886|ref|YP_004069889.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas sp. SM9913]
 gi|315016400|gb|ADT69738.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas sp. SM9913]
          Length = 446

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 83/283 (29%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP------------------- 51
                 A ++ G K   +    DR +  VL         KP                   
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGKPAATESYLDIPRIIAAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+      +E     +         L  DK+ + + +   GVP  
Sbjct: 74  DAV--AIHPGYGFLAENADFADQVEQSGFVFIGPRGDTIRLMGDKVSAIEAMRKAGVPCV 131

Query: 109 PSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P             M     I  P +IK   GG   G+ V++ +  +   +  +      
Sbjct: 132 PGSDGPVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRNEAELINSIALTQQEAKQ 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 FFGNSMVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 VRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|188590130|ref|YP_001920185.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum E3
           str. Alaska E43]
 gi|251778587|ref|ZP_04821507.1| ATP-grasp domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|188500411|gb|ACD53547.1| ATP-grasp domain protein [Clostridium botulinum E3 str. Alaska E43]
 gi|243082902|gb|EES48792.1| ATP-grasp domain protein [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 315

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 78/262 (29%), Gaps = 28/262 (10%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D  +  +  + K DL   +    F      +   +        S      L  DK  +
Sbjct: 53  YIDH-LIKICKNEKVDLLIPLYEKEFSILCENRDKFKKNGTILLLSNKAVIELCNDKWET 111

Query: 97  KQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +      +    S            +++  I  P +IKP  G  S     IK  + +  
Sbjct: 112 YEFFLENEINTPISYCKKDIEQILKRENKENIQFPLIIKPRDGMGSSNFFKIKSIKELEF 171

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +       + +  +I+  ++G E T  V+ D + DV      +           +    
Sbjct: 172 FI------EYVENPIIQHCIEGKEYTIDVLCDLNGDVISAVPRERIEVRSGEVSKTKAVY 225

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
           +    +  +D+            + +   G      +      ++ ++EIN + G     
Sbjct: 226 NKKVIEYTVDLC-----------KKLKGIGPLTIQCIVTEKD-EIKFIEINPRFG----G 269

Query: 273 IFPEMAAYAGYSFRELLLWMVE 294
             P      G  + + L   V 
Sbjct: 270 GVPLTFE-CGVDYGKFLNMFVR 290


>gi|157692158|ref|YP_001486620.1| pyruvate carboxylase [Bacillus pumilus SAFR-032]
 gi|157680916|gb|ABV62060.1| pyruvate carboxylase [Bacillus pumilus SAFR-032]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 83/244 (34%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 60  KPIDAYLDIEGIIEIAKRNDV-DAIHPGYGFLSENIHFARRCEEEGIQFIGPTSQHLDMF 118

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+++++     G+PV P     +   +           P++IK   GG   G+ +++ 
Sbjct: 119 GDKVKAREEAKKAGIPVIPGSDGPVNSVKEVEKFGEEYGYPFIIKASLGGGGRGMRIVRT 178

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +   +   +   V+GD   ++  +         
Sbjct: 179 KEELKEAYDRAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDNHGNIIHLYERDCSVQ- 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +   + +++   A    Q +        +FL    + + +++E
Sbjct: 238 ---RRHQKVIEVAPSVSLTDQLREDICEAAVQLAQNVSYINAGTVEFLV--ANGEFYFIE 292

Query: 262 INVQ 265
           +N +
Sbjct: 293 VNPR 296


>gi|86450085|gb|ABC96231.1| carbamoylphosphate synthetase [Empidadelpha sobrina]
          Length = 1279

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVTQALEAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLNNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|146231215|gb|ABQ12777.1| CAD [Gloma sp. NCSU062219]
          Length = 1131

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 359 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 418

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I    ++    + I +   + D+    + V+     V    +
Sbjct: 419 TFGGQTALNCGVELDRAGIFAKYKVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 478

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 479 VYSVAEALEAAENLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 536

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 537 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 595

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 596 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 651

Query: 291 WM 292
            +
Sbjct: 652 KL 653


>gi|67458811|ref|YP_246435.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia felis
           URRWXCal2]
 gi|67004344|gb|AAY61270.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia felis
           URRWXCal2]
          Length = 665

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/205 (13%), Positives = 67/205 (32%), Gaps = 29/205 (14%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWN 161
              +I   +  +D    I  P ++K   GG   G+ V+     +        L  ++S++
Sbjct: 138 YMGTINDVKQAVDIAKEIGFPVIVKAAAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   ++ D   +   +   +        ++          + I  
Sbjct: 198 DDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQ----RHHQKVIEEAPSSFITE 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           DI +E+ R      Q +G       +F+ D      ++LE+N +              + 
Sbjct: 254 DIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKN-FYFLEMNTR----------LQVEHP 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +++  M++ A+  +
Sbjct: 303 VTELITGI---DIVEEMIKIAAGEK 324


>gi|299740213|ref|XP_001838959.2| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Coprinopsis cinerea
           okayama7#130]
 gi|298404139|gb|EAU82890.2| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Coprinopsis cinerea
           okayama7#130]
          Length = 648

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/143 (16%), Positives = 52/143 (36%), Gaps = 2/143 (1%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK L GG   GI V+  +  +     +    +   Q+  E+ + G       +
Sbjct: 128 EIGYPVMIKALDGGGGRGIRVVNSETEVEEAFKRCLGESPSKQVFAEKALTGPGWK--HI 185

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               +     +V         ++        V P+++   + + +   +    + +   G
Sbjct: 186 EVQIIGDGTGSVNHLWERECSVQRRFQKVVEVAPSRLSRAMVQPLLDASITIARHLKYHG 245

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++L D  +    +LEIN +
Sbjct: 246 LGTFEYLVDAKTGNWVFLEINPR 268


>gi|262407193|ref|ZP_06083742.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
 gi|262355896|gb|EEZ04987.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp. 2_1_22]
          Length = 511

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAVELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|167005874|ref|ZP_02271632.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 443

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMKAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|167648404|ref|YP_001686067.1| urea carboxylase [Caulobacter sp. K31]
 gi|167350834|gb|ABZ73569.1| urea carboxylase [Caulobacter sp. K31]
          Length = 1238

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 56/184 (30%), Gaps = 16/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V +  +++           +G       +++       
Sbjct: 152 AQRIGFPVILKATAGGGGIGMRVCETAEAVSEAFAAVQRLANGHFSDGGVFLERYVRKAR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA   P      +   A     A  
Sbjct: 212 HVEVQMFGDGAGKVVALGERDCSLQRRNQKVVEETPAPGLPAATRAALLDAAVRLASAAH 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            R     +FL+D      F+LE+N +     G+T            G    +L+ WMV  
Sbjct: 272 YRSAGTVEFLYDAERDDFFFLEVNTRLQVEHGVTE--------QVTGV---DLVEWMVRG 320

Query: 296 ASCL 299
           A+  
Sbjct: 321 AAGD 324


>gi|34557456|ref|NP_907271.1| biotin carboxylase [Wolinella succinogenes DSM 1740]
 gi|34483172|emb|CAE10171.1| BIOTIN CARBOXYLASE (ACCC) [Wolinella succinogenes]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 90/259 (34%), Gaps = 26/259 (10%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I +   I +         L  DK  +K+V+   GVPV 
Sbjct: 77  FEADAIFPG-YGFLSENQNFVEICQHHGIEFIGPTPEVMVLMSDKSMAKEVMKKAGVPVI 135

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           P     +       +    I  P ++K   GG   G+ +++K++++    L + S     
Sbjct: 136 PGSEGALSGYEEAKEEAKKIGYPVILKASAGGGGRGMRIVEKEENLINSYLAAESEALSA 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDI 223
                 Y++        +    L                L+          PA     + 
Sbjct: 196 FGDGTIYMEKFIDKPKHIEVQVLADKHGNAIHVGERDCSLQRRHQKLIEESPALALLPET 255

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            +++ + A  A +AI   G    +FL D  ++  +++E+N +              +   
Sbjct: 256 REKLLKTAIEATKAIKYVGAGTFEFLLD-SNQNFYFMEMNTR----------LQVEHPVS 304

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G    +++ WM++ A
Sbjct: 305 EMVSGL---DIVEWMIKIA 320


>gi|329730827|gb|EGG67205.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus 21193]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|311351628|gb|ADP92999.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351630|gb|ADP93000.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/191 (24%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     I+V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWIMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|119358385|ref|YP_913029.1| carbamoylphosphate synthase large subunit (split gene in MJ)-like
           [Chlorobium phaeobacteroides DSM 266]
 gi|119355734|gb|ABL66605.1| Carbamoylphosphate synthase large subunit-like protein [Chlorobium
           phaeobacteroides DSM 266]
          Length = 387

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 79/297 (26%), Gaps = 45/297 (15%)

Query: 22  CASALEDAGFKVS-----------------------QIDVDRS-----VGLVLAHLKPDL 53
              AL+ +G KV                         +D + +     +  ++     D+
Sbjct: 17  VMKALKKSGHKVFIECETKKSYGYYSRYSDVKFIKPLVDYNSNVYLQHIIKLVEKYDIDI 76

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
              +   +       +  +    +  +            K          G+P   +I +
Sbjct: 77  LLPLFDDSAQFASKYKE-ILKCILLLSVPTYDVFLKGYRKNNLMCFCKENGIPHPKTIEL 135

Query: 114 NRFTMDSQHLIS-PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               +D     +  P +IKP     + G++ +   + I   LL++    +G   L E   
Sbjct: 136 TIENIDYAAEYTGLPAIIKPDISFGARGMMFVNNIKEI-KILLKNILRIYGTCTLQEFIP 194

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G             D    ++       Y     S      +       +         
Sbjct: 195 PGGRQYMVHHFRTVADEFLSSMVVEKIRYYPETGGSSCCNRTISYVEIETL-------TK 247

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-QPGMTPVSIFPEMAAYAGYSFREL 288
                +   GI+  D + DP    +  +EIN    G    S        AG  +  +
Sbjct: 248 KVLSKLNWEGIAHFDLIEDPRDNVIKIMEINPRLSGSIKSSF------KAGVDYANI 298


>gi|330683939|gb|EGG95705.1| pyruvate carboxylase [Staphylococcus epidermidis VCU121]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKRANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARAT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     I          +    P +IK   GG   G+ ++ ++  +     
Sbjct: 126 ALKANLPVIPGTDGPIESYEAAQSFANEAGYPLMIKATSGGGGKGMRIVHEESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEIYIERYIDNPKHIEVQVIGDEYGNLIHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+    + + K++   A      I        +FL      + F++E+N +
Sbjct: 246 PSVGLSESLRKKICDAALQLMSHIKYVNAGTVEFLV--SGNEFFFIEVNPR 294


>gi|319949339|ref|ZP_08023411.1| phosphoribosylglycinamide formyltransferase 2 [Dietzia cinnamea P4]
 gi|319436990|gb|EFV92038.1| phosphoribosylglycinamide formyltransferase 2 [Dietzia cinnamea P4]
          Length = 404

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 76/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A AL+  G +V  +D                +D      V  V+   KP +    +
Sbjct: 24  GKEVAIALQRLGVEVVAVDRYDGAPAHQVAHRSHAIDMTDADEVRRVVDLEKPHVILPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                          L  +  T      +       R                       
Sbjct: 84  EAIATSSLEEIEQEGLARVVPTARAARLTMDREGIRRLAAEELGLPTSRYAFASSVEELR 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH--GDQLLIEQYVDGIE 176
           D+   I  P ++KP    S  G   +   + +      + +     G ++++E +VD   
Sbjct: 144 DACSAIGFPCLVKPTMSSSGKGQTTLHGPEDVEAAWSAAQTGARVAGARVIVESFVDFEY 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T              +          P  +  D Y   + +A     
Sbjct: 204 EVTLLTVRSVDPETGRIRTDFCEPIGHRQERGDYVESWQPQPMTQDAYDSARSVAARITG 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G  G+   +   + +   V++ E++ +P
Sbjct: 264 ALGGVGVFGVELFVNGVD--VYFSEVSPRP 291


>gi|317122854|ref|YP_004102857.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           marianensis DSM 12885]
 gi|315592834|gb|ADU52130.1| carbamoyl-phosphate synthase large subunit [Thermaerobacter
           marianensis DSM 12885]
          Length = 1246

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/295 (15%), Positives = 95/295 (32%), Gaps = 31/295 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A    L   G++   +         D D +  L    L P+   NVL          
Sbjct: 701 SVHAV-RTLRALGYRAVIVNNNPETVSTDFDTADRLYFEPLTPEDVRNVLDLEQPVGVLA 759

Query: 60  ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    + +       + I  T    +  A S ++            P   +      
Sbjct: 760 QFGGQTAVNLVAPLAAAGVRILGTSPESVDVAESRERFDRLLARLGLQRPPGAAARSVAE 819

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            + +   I  P +++P        + V +  + +   L  ++       + +++Y+ G+E
Sbjct: 820 ALAAAERIGYPVIVRPSYVLGGRAMQVARSPEELARYLATAARVAGDRPVWVDRYIAGME 879

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L    + D    V    +   +       +S  +   V    +P ++   V+       +
Sbjct: 880 LEVDAVADGETVVIPAVMRHIERAG---VHSGDSIAVVPAPGVPGEVLARVEAATVELAR 936

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           A+  RG+    F++D    +++ LE+N +   T     P +    G    EL   
Sbjct: 937 ALQVRGVINLQFVWD--GEELYVLEVNPRASRT----VPFITKATGVPLTELATR 985



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 81/301 (26%), Gaps = 32/301 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                          V+   +PD    
Sbjct: 73  SGTQACRALKEEGLEVVLLNSNPATVMTDPGTADRIYVEPLTAEFAEAVIRQERPDALLP 132

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            L G                    + +  T    +  A   D  +   +     VP    
Sbjct: 133 TLGGQVGLNLAMELVRAGVLDRYGVRLLGTPPEAIQRAEDRDAFKQLMLSIGEPVPQSTI 192

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P + +P       G  + + ++ +   + +  + +   Q+L+E+
Sbjct: 193 VRSYDEALAFARRVGFPVIARPGYTLGGTGGGIARDERELEALIDRGLAASPIGQVLLEE 252

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +               +     +                  + + ++  
Sbjct: 253 SLLGWKEIEFEVIRDGAGNAIAICSMENVDPVGVHTGDSIVVAPALTLTDRQL-QRLRSA 311

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     AIG  G         P       +E+N  P ++  S     +   GY   ++  
Sbjct: 312 SLRIVDAIGVEGGCNVQLALRPDGAAYRVIEVN--PRVSRSS--ALASKATGYPIAKVAA 367

Query: 291 W 291
            
Sbjct: 368 R 368


>gi|311070874|ref|YP_003975797.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus atrophaeus
           1942]
 gi|310871391|gb|ADP34866.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus atrophaeus
           1942]
          Length = 384

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 77/273 (28%), Gaps = 37/273 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                VD      +  V+   KPDL    +
Sbjct: 16  GKEVVIEAQRLGVETVAVDSYEHAPAMQVAHKSYVVDMLNREQIREVIEKEKPDLIVPEV 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ L         IP   +  L       +  + + +                  
Sbjct: 76  EAIATDELLKLEAEGFRVIPNARAAKLTMDREGIRRLAAETLGLST-AGYEFADTYEEFT 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KPL   S  G  V + +  +      +            +  +G  + 
Sbjct: 135 QAAGQIGFPCVVKPLMSSSGKGQSVCRSEADLEGCWEMAM--------EGGRVKNGRVI- 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                    ++T + V   +  ++                  P ++     +E + +A  
Sbjct: 186 VEEFIPFESEITLLTVRAVNGTAFCAPIGHVQKDGDYIESWQPHQMTEQQIEEAKHIAKT 245

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +G  G+   +        KV++ E++ +P
Sbjct: 246 ITDELGGYGLFGVELFL--AKNKVYFSEVSPRP 276


>gi|307824219|ref|ZP_07654445.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacter
           tundripaludum SV96]
 gi|307734599|gb|EFO05450.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacter
           tundripaludum SV96]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A  + G KV  +  + DR +  V LA            D   N           
Sbjct: 14  ALRILRACRELGVKVVAVHSEADRDLKHVRLADESVCIGPASSADSYLNIPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      ++     +         +  DK+ +K+ +   G+P  P 
Sbjct: 74  DAEAIHPGYGFLSENADFSEKVKQSGFVFIGPNAETIRMMGDKISAKKAMLEAGIPCVPG 133

Query: 111 ILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +       H I  P +IK   GG   G+  +  + ++   +  + +      
Sbjct: 134 NNDPLSDDNKKNLKLAHEIGYPVIIKAAGGGGGRGMRTVHTEAALLNAIAMTKAEAGTAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +  +             ++          PA    +  +
Sbjct: 194 GNPTVYMEKFLEDPRHIEFQVMADSHGNAIHLGERDCSMQRRHQKVVEEAPAPGITEAQR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG  G    +FL+     + +++E+N +
Sbjct: 254 KAIGERCAKACVDIGYLGAGTFEFLY--EKGEFYFIEMNTR 292


>gi|237720267|ref|ZP_04550748.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_2_4]
 gi|229450819|gb|EEO56610.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_2_4]
          Length = 504

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 47  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 107 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 167 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 226

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 227 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|189461636|ref|ZP_03010421.1| hypothetical protein BACCOP_02295 [Bacteroides coprocola DSM 17136]
 gi|189431666|gb|EDV00651.1| hypothetical protein BACCOP_02295 [Bacteroides coprocola DSM 17136]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGISSVLVNPNIATIQTSEGIADQVYFLPVTPYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +L+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYQTGVLKEYGVQVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +I+       LG  +   +       L  S++    Q+L+E+
Sbjct: 147 VENMEDALAAARRIGYPVMIRSAYALGGLGSGICPDETKFIE--LAESAFTFSPQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTQEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SKQCIRHLGIVGECNIQYAFNADTNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|119468159|ref|ZP_01611285.1| acetyl-CoA carboxylase [Alteromonadales bacterium TW-7]
 gi|119448152|gb|EAW29416.1| acetyl-CoA carboxylase [Alteromonadales bacterium TW-7]
          Length = 446

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/283 (16%), Positives = 82/283 (28%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP------------------- 51
                 A ++ G K   +    DR +  VL         KP                   
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGKPSATDSYLDIPRIIAAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+      +E     +         L  DK+ +   +   GVP  
Sbjct: 74  DAV--AIHPGYGFLAENADFADQVEQSGFVFIGPKGDTIRLMGDKVSAIAAMRKAGVPCV 131

Query: 109 PS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         N   M     I  P +IK   GG   G+ V++ +  +   +  +      
Sbjct: 132 PGSDGPVTDDNERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRNESELVNSISLTQQEAKQ 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 FFGNGMVYMEKYLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|87310369|ref|ZP_01092499.1| pyruvate carboxylase [Blastopirellula marina DSM 3645]
 gi|87286868|gb|EAQ78772.1| pyruvate carboxylase [Blastopirellula marina DSM 3645]
          Length = 1147

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 76/235 (32%), Gaps = 7/235 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D SV  +      D      +G   E+  +    E   I +    +       DK  
Sbjct: 64  LDID-SVIRLCREHNIDAVHPG-YGFMSENPELARACEENGIIFVGPSVDCLERLGDKTA 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ +     VPV       I            +  P ++K  KGG   G+ V+++     
Sbjct: 122 ARAIAEQANVPVLSGSPKAISTADEGRKLAEKLGFPIILKAAKGGGGRGMRVVREAAEFD 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                ++  +       + +V+        +    +      +         ++      
Sbjct: 182 ASFDSATRESQSAFGSPDIFVEKYIEQARHIEVQLMGDRHGDLVHLFERDCSVQRRHQKV 241

Query: 212 THVLPAKIP-LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + PA     ++   +   A    + +G +     +FL D  S + F++E+N +
Sbjct: 242 VEIAPAPNLLPEVRIALCEAAIKIGKEVGYQNAGTVEFLVDKKSNQYFFIEVNPR 296


>gi|282883128|ref|ZP_06291727.1| pyruvate carboxylase [Peptoniphilus lacrimalis 315-B]
 gi|281296940|gb|EFA89437.1| pyruvate carboxylase [Peptoniphilus lacrimalis 315-B]
          Length = 1141

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 88/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 AL + G +   I                   + +    + A+L  D        
Sbjct: 16  AIRVFRALRELGIRSVAIYSKEDQLSLFRTKADESYLIGKDKSPLGAYLDIDEIIKLAKA 75

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+    A  E   I +      A     DK++SK V ++  VP  P
Sbjct: 76  KAVDAIHPGYGFLAENAEFAAKCEKEGITFIGPSSSAMEALGDKIKSKIVANNAKVPTIP 135

Query: 110 SILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
            I       +           P +IK   GG   G+ V+  ++ +   L         ++
Sbjct: 136 GIQKPIENDEQAKDFAKEAGYPVIIKASFGGGGRGMRVVNNEKELIEKLHSAKSEAKQAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +       +   ++GD   ++  +            K         LP    
Sbjct: 196 GNDAIFIEKYLEKPKHIEVQILGDKFGNIVHLFERDCSIQRRHQKVIEFTPAFSLP---- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + + + A     +IG       +FL D      +++E+N +
Sbjct: 252 KNVRESICQDALKIANSIGYTNAGTVEFLVDKNLNH-YFIEVNPR 295


>gi|158451209|gb|ABW38965.1| putative CAD trifunctional protein [Lymantria dispar]
          Length = 976

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I +   +    + I +   + D+     +       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKIFKKYNVNVLGTPIQSIVNTEDRKIFAEEINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   LL   + +H DQL+I++
Sbjct: 496 VTSVEEALAAASQIGYPVMARSAFSLGGLGSGFANNEDEL--KLLAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFNNCITVCNMENIDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIQHFGVVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|119356082|ref|YP_910726.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353431|gb|ABL64302.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeobacteroides DSM 266]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ ++  +   L  + S           Y++       
Sbjct: 148 AQNTGYPVIIKPTAGGGGKGMRVVHEENQLEKALNTARSEAEQAFGNSGVYIEKFLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+    D + K +   A  A  AI 
Sbjct: 208 HVEIQILSDQHGNTIHLGERDCTVQRRHQKLIEETPSPAVDDALRKTMGDAAVAAAAAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    K F++E+N +
Sbjct: 268 YEGAGTIEFLLDKH-GKFFFMEMNTR 292


>gi|94499578|ref|ZP_01306115.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Oceanobacter sp. RED65]
 gi|94428332|gb|EAT13305.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Oceanobacter sp. RED65]
          Length = 1621

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 57/150 (38%), Gaps = 9/150 (6%)

Query: 121  QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
               I  P ++K + GG   GI V+++   I     Q S+     + +GD  L +      
Sbjct: 1192 ADKIGYPVLLKAVHGGGGKGIQVVREPGEIHELFHQISTEARSAFGNGDVYLEKFVTSLR 1251

Query: 176  ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             +   V+ D   +   + +          K    + +  LP  +   +Y   +       
Sbjct: 1252 HIEVQVLRDGHGNCKVLGLRDCSVQRNNQKIIEESGSVTLPDTLEKKVYDYAR----KLA 1307

Query: 236  QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A+   G    +F++D  +  V+++E+N +
Sbjct: 1308 DAVDYVGAGTVEFIYDLDANDVYFMEMNTR 1337


>gi|2245422|gb|AAB62519.1| D-alanine:D-alanine ligase [Streptococcus anginosus SK52]
          Length = 197

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/143 (27%), Positives = 66/143 (46%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +    +   L  +    +  ++LIEQ V+  E+  G
Sbjct: 57  EANLTYPVFTKPSNMGSSVGISKSENQDELRSALELAF--KYDSRVLIEQGVNAREIEVG 114

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+     +     V    FY YE KY     T  +PAK+  D+   +++ A     AI
Sbjct: 115 LLGNEGAKSSLPGEVVKDVAFYDYEAKYIDNKITIDIPAKLSEDVIATMRQYAEKRFHAI 174

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G++R DF +     ++F  E
Sbjct: 175 GGVGLARCDFFYTDK-GEIFLNE 196


>gi|86152739|ref|ZP_01070944.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|85843624|gb|EAQ60834.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
          Length = 443

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|327188274|gb|EGE55494.1| putative urea amidolyase protein [Rhizobium etli CNPAF512]
          Length = 1179

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    +S+                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARVYIERFVADAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA          + + A      + 
Sbjct: 207 HVEVQIFGDGRGNVIALGERDCSLQRRNQKVVEETPAPGLSAATRGRLHKAAVDLGALVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DPL ++ ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPLRQEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|302333203|gb|ADL23396.1| acetyl-CoA carboxylase accC (biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|296394696|ref|YP_003659580.1| carbamoyl-phosphate synthase large subunit [Segniliparus rotundus
           DSM 44985]
 gi|296181843|gb|ADG98749.1| carbamoyl-phosphate synthase, large subunit [Segniliparus rotundus
           DSM 44985]
          Length = 1119

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 98/313 (31%), Gaps = 40/313 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLRAEGVRVSLVNSNPATIMTDPEFADATYIEPITPEFVEKVIARERPDALLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+ R K +V+  G     S +
Sbjct: 89  TLGGQTALNTAIALHENGVLEKYGVELIGADVEAIRRGEDRQRFKDIVAKIGGESARSRV 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P V++P      LG  + +  + + L      S +    +LIE+
Sbjct: 149 CHSMAEVHETVAELGLPVVVRPSFTMGGLGSGLARTPEDLELIAGAGLSASPTANVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   +     +     +      +          +  +     
Sbjct: 209 SIYGWKEYELELMRDGKDNVVVVCSIENLDPLGVHTGDSVTVAPAMTLTDREFQRMRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA-- 279
             +  +     G     F  +P + ++  +E+N  P ++  S            ++AA  
Sbjct: 269 IDILREVGVATGGCNIQFAVNPQNGRIIVIEMN--PRVSRSSALASKATGFPIAKIAAKL 326

Query: 280 YAGYSFRELLLWM 292
             GY+  E++  +
Sbjct: 327 AIGYTLDEIVNDI 339


>gi|86450101|gb|ABC96239.1| carbamoylphosphate synthetase [Anthepiscopus sp. JKM-2006]
          Length = 1277

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +  ++    + I +   + D+      V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFDKYKVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALDAADKLGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPDSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|1934750|emb|CAA71346.1| acetyl-CoA carboxylase [Brassica napus]
          Length = 640

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 61/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 172 PTLPWSGSHVKIPPDSSLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 231

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +     +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 232 IRKVHNADEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 291

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++      +++   G +  ++L+   + + ++
Sbjct: 292 QRRHQKIIEEGPITVAPQ----ETIKKLEQAGRRLAKSVNYVGAATVEYLYSMDTGEYYF 347

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 348 LELNPR 353


>gi|57238340|ref|YP_179468.1| biotin carboxylase [Campylobacter jejuni RM1221]
 gi|57167144|gb|AAW35923.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           RM1221]
 gi|315058775|gb|ADT73104.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni S3]
          Length = 443

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQIIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|11869927|gb|AAG40563.1|AF062308_1 acetyl-CoA carboxylase 1 [Arabidopsis thaliana]
 gi|600178|gb|AAC41645.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|1090217|prf||2018327A Ac-CoA carboxylase
          Length = 2254

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 63/186 (33%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 175 PTLPWSGSHVKIPPNSNLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 234

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 235 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVSALHSRDCSV 294

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    +++   G +  ++L+   + + ++
Sbjct: 295 QRRHQKIIEEGPITVAPP----ETVKKLEQAARRLAKSVNYVGAATIEYLYSMDTGEYYF 350

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 351 LELNPR 356


>gi|86149992|ref|ZP_01068220.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|205356306|ref|ZP_03223072.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8421]
 gi|85839438|gb|EAQ56699.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|205345911|gb|EDZ32548.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 443

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAVK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|288818136|ref|YP_003432484.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|288787536|dbj|BAI69283.1| carbamoyl-phosphate synthase large subunit [Hydrogenobacter
           thermophilus TK-6]
 gi|308751737|gb|ADO45220.1| MGS domain protein [Hydrogenobacter thermophilus TK-6]
          Length = 532

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/291 (15%), Positives = 92/291 (31%), Gaps = 32/291 (10%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
            A   AL + G +   +         D D             +V  V+   KPD  F   
Sbjct: 26  HAIY-ALREEGIETIMLNCNPETVSTDYDTADKLYFEPIVLENVLEVIRKEKPDGVFLQF 84

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      ++I  T    +  A   +  R          P   ++      +
Sbjct: 85  GGQTPLKLSLHLKKAGVKILGTEPESIDMAEDRELFRDLINKLGIRQPPSGTVRSKEEAI 144

Query: 119 DSQHLISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                I  P +++P    G     I+  +++ +       S       L+ +   D +E+
Sbjct: 145 KIAEGIGYPVLVRPSYVLGGRAMRIIYDEEELLSYLEEAVSVSYERPILIDKYLSDSVEV 204

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +GD    +    +   +       +S  ++  + P  +   + K ++  +    +A
Sbjct: 205 DVDAIGDGEDYLIGAVMEHIEEAG---VHSGDSAACIPPYTLGEQVVKTIKEQSKKIAKA 261

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +  RG+    F        V+ LE+N +   T     P ++   GY   ++
Sbjct: 262 LNVRGLINLQFAIKGED--VYVLEVNPRASRT----VPFVSKAIGYPLAKI 306


>gi|228909773|ref|ZP_04073596.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 200]
 gi|228850062|gb|EEM94893.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 200]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228922698|ref|ZP_04085997.1| Pyruvate carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
 gi|228836972|gb|EEM82314.1| Pyruvate carboxylase [Bacillus thuringiensis serovar huazhongensis
           BGSC 4BD1]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228941109|ref|ZP_04103665.1| Pyruvate carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|228974040|ref|ZP_04134613.1| Pyruvate carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228980632|ref|ZP_04140940.1| Pyruvate carboxylase [Bacillus thuringiensis Bt407]
 gi|228779100|gb|EEM27359.1| Pyruvate carboxylase [Bacillus thuringiensis Bt407]
 gi|228785676|gb|EEM33682.1| Pyruvate carboxylase [Bacillus thuringiensis serovar thuringiensis
           str. T01001]
 gi|228818562|gb|EEM64631.1| Pyruvate carboxylase [Bacillus thuringiensis serovar berliner ATCC
           10792]
 gi|326941720|gb|AEA17616.1| pyruvate carboxylase [Bacillus thuringiensis serovar chinensis
           CT-43]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|218899103|ref|YP_002447514.1| pyruvate carboxylase [Bacillus cereus G9842]
 gi|218545677|gb|ACK98071.1| pyruvate carboxylase [Bacillus cereus G9842]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|115397253|ref|XP_001214218.1| protein ura1 [Aspergillus terreus NIH2624]
 gi|114192409|gb|EAU34109.1| protein ura1 [Aspergillus terreus NIH2624]
          Length = 2257

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 504 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 563

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 564 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDREFFARSMDSINEKCAKSASAS 623

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG         +    L + ++    Q+LIE+ +
Sbjct: 624 NLEEALRVVEDIGFPVIVRAAYALGGLGSGFADDMGQLKE--LCTKAFAASPQVLIEKSM 681

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 682 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 740

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 741 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 790


>gi|15615350|ref|NP_243653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
 gi|10175408|dbj|BAB06506.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           halodurans C-125]
          Length = 452

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/183 (15%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AEQIGYPVIIKATAGGGGKGIRVARNEEELRKGINITQQEAATAFGNPGVYLEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++     A  A +A+ 
Sbjct: 208 HVEIQVLADNHGHVIHLGERDCSIQRRLQKLLEETPSPAITEKKRKEMGEAAVAAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F++D  +   +++E+N       P         EM    G    +L+   ++
Sbjct: 268 YSGAGTVEFIYDHNNGDFYFMEMNTRIQVEHP-------VTEM--VTGI---DLIKEQIK 315

Query: 295 DAS 297
            AS
Sbjct: 316 VAS 318


>gi|330995406|ref|ZP_08319316.1| carbamoyl-phosphate synthase, large subunit [Paraprevotella
           xylaniphila YIT 11841]
 gi|329575901|gb|EGG57425.1| carbamoyl-phosphate synthase, large subunit [Paraprevotella
           xylaniphila YIT 11841]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGVRSVLVNPNIATIQTSEGIADEVYFLPVTPYFVTEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +     +LE   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGTELYRNGVLEEYGVEVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPVSKA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +I+       LG  +   ++        + ++    Q+L+E+
Sbjct: 147 VENMEDALAAAREIGYPVMIRSAYALGGLGSGICPDEERFIELAGSAFTFAP--QVLVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SKKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|315608049|ref|ZP_07883042.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae ATCC
           33574]
 gi|315250518|gb|EFU30514.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae ATCC
           33574]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G K   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGIKTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIQKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELYRSGVLEKYGVKVLGTPVQAIMDTEDRELFVEKLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 CENIEQARTAAATLGYPVIIRAAYALGGLGSGFADNEEELN--VLAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLNNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|288925012|ref|ZP_06418948.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae D17]
 gi|288338202|gb|EFC76552.1| carbamoyl-phosphate synthase, large subunit [Prevotella buccae D17]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G K   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGIKTVLINPNIATVQTSEGVADQIYFLPVQSYFVERVIQKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELYRSGVLEKYGVKVLGTPVQAIMDTEDRELFVEKLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +I+       LG      ++ +   +L   +++   Q+L+E+
Sbjct: 148 CENIEQARTAAATLGYPVIIRAAYALGGLGSGFADNEEELN--VLAEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLNNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 AIKIIRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|218246268|ref|YP_002371639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 8801]
 gi|218166746|gb|ACK65483.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           8801]
          Length = 449

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENAKFSEICADHQITFIGPSPEAIRAMGDKSTAKKTMQKAGVPTVPGSWG 137

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              T      I+     P +IK   GG   G+ ++++D         +            
Sbjct: 138 VIETEQEAQEIARDIGYPMMIKATAGGGGRGMRLVREDSEFSRAFQSAQGEAEAAFGNKG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  ++  V         ++          P+     ++  ++ 
Sbjct: 198 VYLEKFIERPRHIEFQILADSQGNVVHLGERDCSIQRRHQKLLEEAPSPFLTPELRLKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A ++I   G    +FL D      +++E+N +
Sbjct: 258 EAAVKAAKSIDYVGAGTVEFLVDNQGN-FYFMEMNTR 293


>gi|26522954|dbj|BAC44871.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Pagrus major]
 gi|27877105|dbj|BAC55878.1| 3-methylcrotonyl CoA carboxylase biotin containing subunit [Pagrus
           major]
          Length = 717

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 56/186 (30%), Gaps = 19/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK ++GG   G+ + + D      L  +              V+       
Sbjct: 184 AAKIGYPVMIKAVRGGGGKGMRIARSDSDFLEQLESARREARKSFNDDVMLVEKFVEDPR 243

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +                     ++          P   I  ++ +++   A  A +A+ 
Sbjct: 244 HVEAQVFGDMHGNAVYLFERDCSVQRRHQKIIEEAPGPGISPEVRRKLGEAAVKAAKAVN 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+ D      +++E+N       P         EM      +  +L+ W + 
Sbjct: 304 YVGAGTVEFIMDAQHN-FYFMEMNTRLQVEHP-------VSEM-----ITGTDLVEWQLR 350

Query: 295 DASCLR 300
            A+  R
Sbjct: 351 VAAGER 356


>gi|312865548|ref|ZP_07725775.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           downei F0415]
 gi|311099066|gb|EFQ57283.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           downei F0415]
          Length = 461

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 92/281 (32%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I       S+ ++LA            D   N              
Sbjct: 23  IIRAARELGVETVAIYSEADKESLHVLLADEAICVGPARSSDSYLNMNAVLSAAIVTGAE 82

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E ++I +            DK+ ++  +    VPV P    
Sbjct: 83  AIHPGFGFLSENSKFATMCEEMKIKFIGPSGAIMDKMGDKINARSEMIKAQVPVIPGSDG 142

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            ++     +     I  P ++K   GG   GI  ++K + +      +S      + +G 
Sbjct: 143 EVMTAEDALKVADEIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASQEALAAFGNGA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  +V  +            K    + +  +       + 
Sbjct: 203 MYIEKVIYPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVLEESPSIAI----GASLR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +A+G       +FL D  S   +++E+N +
Sbjct: 259 SKMGDAAVRAAKAVGYENAGTIEFLLDETSGNFYFMEMNTR 299


>gi|258423180|ref|ZP_05686073.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9635]
 gi|257846630|gb|EEV70651.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           A9635]
          Length = 451

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDSYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|225851041|ref|YP_002731275.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
 gi|225645267|gb|ACO03453.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Persephonella
           marina EX-H1]
          Length = 455

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 72/216 (33%), Gaps = 6/216 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    +I E   I +         L+ DK  +++     GVP+ P  
Sbjct: 83  DAVYPG-YGFLAENPHFASICEKSNIKFIGPKSETIRLTGDKAAARKAAEEAGVPIIPGS 141

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +   +  ++    I  P +IK   GG   G+ V+  +Q +   L  +      +    
Sbjct: 142 PPVENLKDALEIASDIGYPVLIKAAAGGGGRGMRVVHNEQELTRLLPVAQREAEANFGDP 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L      V         ++          P+    D  ++  
Sbjct: 202 RVYIEKFIKNPKHIEIQILADEYGNVIYLGDRECSIQRRHQKLIEESPSPFINDKVRKEM 261

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              A    + +G  G    +F+ D      +++E+N
Sbjct: 262 GEAAVRFAKHVGFTGAGTVEFIVDE-DMNFYFIEMN 296


>gi|90420297|ref|ZP_01228205.1| pyruvate carboxylase [Aurantimonas manganoxydans SI85-9A1]
 gi|90335631|gb|EAS49381.1| pyruvate carboxylase [Aurantimonas manganoxydans SI85-9A1]
          Length = 1154

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 53/157 (33%), Gaps = 9/157 (5%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                     +  P ++K   GG   G+  I+ ++ +  ++++        +   +  L 
Sbjct: 149 MDEVRRMAAEVGYPVMLKASWGGGGRGMRAIRDEKDLEREVVEGKREARAAFGKDEVYLE 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +       +   ++GD   +V ++            K         L      +I    +
Sbjct: 209 KLIERARHVEVQILGDTHGNVVDLFERDCSIQRRNQKVVERAPAPYLDDAQRAEIAGYAR 268

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +LA          G    +FL D  S K +++E+N +
Sbjct: 269 KLADATA----YVGAGTVEFLMDADSGKFYFIEVNPR 301


>gi|157826017|ref|YP_001493737.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia akari
           str. Hartford]
 gi|157799975|gb|ABV75229.1| propionyl-CoA carboxylase alpha chain precursor [Rickettsia akari
           str. Hartford]
          Length = 665

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 95/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      DG+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KRDGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAVD------IAKEIGFPVIVKAAA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 166 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNS 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          A I  DI +E+ R      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSAFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D  +R  ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 282 VD-SNRNFYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIKIAAGEK 324


>gi|163848951|ref|YP_001636995.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222526904|ref|YP_002571375.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus sp.
           Y-400-fl]
 gi|163670240|gb|ABY36606.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus
           aurantiacus J-10-fl]
 gi|222450783|gb|ACM55049.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus sp.
           Y-400-fl]
          Length = 455

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/257 (14%), Positives = 76/257 (29%), Gaps = 26/257 (10%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +    ++ +         L  DK   ++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENPYFAEMCADCKLTFIGPPPEPIRLMGDKAIGRETMRKAGVPTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +D    I  P ++KP  GG   G+ V   +  +      + +          
Sbjct: 137 EVRSLEEAIDVARQIGYPVLLKPSGGGGGRGMRVAYDEADLQRAFPTARAEAEAAFGNGA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             ++        +    L                 +          P+  +  ++ + + 
Sbjct: 197 LLLEKYLTRVRHVEIQVLADQYGHAIHLGERDCSAQRRHQKIVEEAPSPAVTPELRERMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A    ++IG       +FL D      +++E+N       P +T            G 
Sbjct: 257 ADAVRGIKSIGYVNAGTLEFLLD-QDGNYYFIEMNTRIQVEHP-VTE--------QVTGI 306

Query: 284 SFRELLLWMVEDASCLR 300
              +L+ W +  AS  R
Sbjct: 307 ---DLVRWQLLIASGER 320


>gi|298384813|ref|ZP_06994372.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           1_1_14]
 gi|298261957|gb|EFI04822.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           1_1_14]
          Length = 1073

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEINMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKL-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|255525687|ref|ZP_05392619.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|296184792|ref|ZP_06853203.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|255510589|gb|EET86897.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
 gi|296050574|gb|EFG89997.1| pyruvate carboxylase [Clostridium carboxidivorans P7]
          Length = 1146

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 88/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A ++ G +   I                   + ++ G V A+L  D   N    
Sbjct: 17  AIRIFRACQELGIRTVAIYSDEDKRSLFRTKADEAYLIGKNKGPVEAYLNIDEIINLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   + +            DK++SK    + GV   P
Sbjct: 77  KGVDAIHPGYGFLSENAEFARKCEEAGMEFIGPTAEMMDSLGDKIKSKIAAKNAGVATIP 136

Query: 110 SILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +          ++   +   P ++K   GG   G+ ++  ++ +        +     +
Sbjct: 137 GVQKPIESEEDAVEFARVCGYPVMLKAAAGGGGRGMRIVLDEKDLIESYKSCKNEAKKAF 196

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   V+GD   ++  +            +             + 
Sbjct: 197 GIDDIFIEKYVQNPKHIEVQVLGDKHGNIVHLYERDCSIQ----RRHQKVIEFTPAIALS 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +    + + A    +++G R     +FL D  +   +++E+N +
Sbjct: 253 EEKRNVICQDALKIAKSVGYRSAGTLEFLVD-KNGNHYFIEMNPR 296


>gi|153809088|ref|ZP_01961756.1| hypothetical protein BACCAC_03396 [Bacteroides caccae ATCC 43185]
 gi|149128421|gb|EDM19640.1| hypothetical protein BACCAC_03396 [Bacteroides caccae ATCC 43185]
          Length = 1073

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEINMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKL-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|88807226|ref|ZP_01122738.1| acetyl-CoA carboxylase [Synechococcus sp. WH 7805]
 gi|88788440|gb|EAR19595.1| acetyl-CoA carboxylase [Synechococcus sp. WH 7805]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +++    +          +    G+  L  +       
Sbjct: 149 AMAMGYPVMIKATAGGGGRGMRLVQSPDQLENLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  ++   +   A  A ++
Sbjct: 209 HVEVQVLADRHG--HVVHLGERDCSIQRRHQKLLEEAPSPALDQNLRLRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D  +   +++E+N +
Sbjct: 267 INYEGAGTVEFLLD-RNGGFYFMEMNTR 293


>gi|320539774|ref|ZP_08039435.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Serratia
           symbiotica str. Tucson]
 gi|320030177|gb|EFW12195.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Serratia
           symbiotica str. Tucson]
          Length = 446

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSIADRDLKHVLLADETVCIGPAPSVRSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V+  D+ +   +  + +     +
Sbjct: 134 SDGPLTDDMDKNHAFAKRIGYPVIIKASGGGGGRGMRVVHSDKDLEQSINMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SDMRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|222081214|ref|YP_002540577.1| acetyl-CoA carboxylase biotin carboxylase subunit [Agrobacterium
           radiobacter K84]
 gi|221725893|gb|ACM28982.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 461

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI ++     +      +S+           Y++ +     
Sbjct: 149 AATIGFPVMIKAAAGGGGRGIRIVADIAELEQQFPLASAEALAAFGDGGLYMEKVITRAR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        +  V   +      +             +P ++ + +   A    + +G 
Sbjct: 209 HVEVQIFGDGQNFVHFFERECSLQRRRQKVWEEAPAFLLPANVRERLCGSAVALAREVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++L+D  +   +++E+N +
Sbjct: 269 RGAGTVEYLYDDETGDFYFIEVNTR 293


>gi|158319446|ref|YP_001511953.1| acetyl-CoA carboxylase, biotin carboxylase [Alkaliphilus oremlandii
           OhILAs]
 gi|158139645|gb|ABW17957.1| acetyl-CoA carboxylase, biotin carboxylase [Alkaliphilus oremlandii
           OhILAs]
          Length = 455

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI            + S +         YV+       
Sbjct: 148 AEEIGFPVMVKAASGGGGRGMRVIHNRDEFINKFNMAKSESSTAFNDDAMYVEKFIEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   +         L+  +       P +I   ++  ++ ++A  A +A+G
Sbjct: 208 HIEFQILADTFGNIIHLGERDCSLQRRNQKVLEEAPCQIISEELRNKMGQMALRAAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      +++E+N +
Sbjct: 268 YVNAGTIEFLLDKHHN-FYFIEMNTR 292


>gi|15805157|ref|NP_293843.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus
           radiodurans R1]
 gi|6457782|gb|AAF09707.1|AE001874_4 acetyl-CoA carboxylase, biotin carboxylase subunit [Deinococcus
           radiodurans R1]
          Length = 445

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 46/145 (31%), Gaps = 1/145 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G  VI+  + +     Q+              ++       
Sbjct: 147 AKQIGYPVLLKASAGGGGRGQKVIRTQEELQKGFNQAQEEARLYFGDPAIIMEKFLEEFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +   +  V         ++  +       P+ +P  + +E+        Q +  
Sbjct: 207 HIEVQVMGDGQGHVIHIGERDCSIQRRNQKLIEEAPSTLPESLRQEILAAGVRLAQFVNY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+ D      +++E+N +
Sbjct: 267 AGAGTLEFIMD-RDGNYYFMEMNTR 290


>gi|57640142|ref|YP_182620.1| phosphoribosylglycinamide formyltransferase 2 [Thermococcus
           kodakarensis KOD1]
 gi|74503961|sp|Q5JFN8|PURT_PYRKO RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|57158466|dbj|BAD84396.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Thermococcus kodakarensis KOD1]
          Length = 429

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/303 (15%), Positives = 86/303 (28%), Gaps = 34/303 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRSV 42
           VL+G  S E    L  GK  A   +  G +V  +D                        +
Sbjct: 20  VLLG--SGE----L--GKEIAIEAQRLGVEVIAVDRYANAPAMQIAHRSYVGDMRKADFL 71

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPD     +     +            +P   +  +A      +    +    
Sbjct: 72  FSVVEREKPDAIIPEIEAINLDALFELEKDGYFVVPNAKATWIAMHRERTRETLAREAKV 131

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                           ++   I  P   K +   S  G   +K  + +P    ++     
Sbjct: 132 PT-SRYTYASTLDELYEACEKIGYPCHTKAIMSSSGKGSYFVKGPEDVPKAWEEAKKKAR 190

Query: 163 GD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + LI +     ++    +     D     V          +      +   PA+I  
Sbjct: 191 GSAEKLIVEEHIDFDVEITELAVRHYDENGEVVTTFPKPVGHYQIDGDYHSSWQPAEISE 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
              +EV R+A      +G  GI   +        KV+  E++ +P      +    +   
Sbjct: 251 RAEREVYRIAKRITDVLGGLGIFGVEMFV--KGDKVWANEVSPRP--HDTGMVTLASHPT 306

Query: 282 GYS 284
           G+S
Sbjct: 307 GFS 309


>gi|15604467|ref|NP_220985.1| propionyl-COA carboxylase alpha chain precursor (pccA) [Rickettsia
           prowazekii str. Madrid E]
 gi|3861161|emb|CAA15061.1| PROPIONYL-COA CARBOXYLASE ALPHA CHAIN PRECURSOR (pccA) [Rickettsia
           prowazekii]
          Length = 665

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 66/205 (32%), Gaps = 29/205 (14%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWN 161
              +I   +  +D    I  P ++K   GG   G+ V+     +        L  ++S++
Sbjct: 138 YMGTIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   ++ D   +   +   +        ++          + I  
Sbjct: 198 DDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQ----RHHQKVIEEAPSSFITE 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           +I  E+ R      Q +G       +F+ D      ++LE+N +              + 
Sbjct: 254 NIRHEMYRQVISLSQKVGYYSAGTVEFIVDSNKN-FYFLEMNTR----------LQVEHP 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +++  M++ A+  +
Sbjct: 303 VTELITGI---DIVEEMIKIAAGEK 324


>gi|311351414|gb|ADP92892.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351416|gb|ADP92893.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351420|gb|ADP92895.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351428|gb|ADP92899.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351432|gb|ADP92901.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351434|gb|ADP92902.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351438|gb|ADP92904.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351442|gb|ADP92906.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351444|gb|ADP92907.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351448|gb|ADP92909.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351450|gb|ADP92910.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351454|gb|ADP92912.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351456|gb|ADP92913.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351464|gb|ADP92917.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351466|gb|ADP92918.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351468|gb|ADP92919.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351472|gb|ADP92921.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351474|gb|ADP92922.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351476|gb|ADP92923.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351478|gb|ADP92924.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351482|gb|ADP92926.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351484|gb|ADP92927.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351486|gb|ADP92928.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351492|gb|ADP92931.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351496|gb|ADP92933.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351504|gb|ADP92937.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351506|gb|ADP92938.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351508|gb|ADP92939.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351510|gb|ADP92940.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351512|gb|ADP92941.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351516|gb|ADP92943.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351520|gb|ADP92945.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351522|gb|ADP92946.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351524|gb|ADP92947.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351526|gb|ADP92948.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351528|gb|ADP92949.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351530|gb|ADP92950.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351532|gb|ADP92951.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351534|gb|ADP92952.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351536|gb|ADP92953.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351538|gb|ADP92954.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351540|gb|ADP92955.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351542|gb|ADP92956.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351546|gb|ADP92958.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351548|gb|ADP92959.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351550|gb|ADP92960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351552|gb|ADP92961.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351554|gb|ADP92962.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351556|gb|ADP92963.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351558|gb|ADP92964.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351560|gb|ADP92965.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351562|gb|ADP92966.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351564|gb|ADP92967.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351566|gb|ADP92968.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351570|gb|ADP92970.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351572|gb|ADP92971.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351576|gb|ADP92973.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351580|gb|ADP92975.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351582|gb|ADP92976.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351584|gb|ADP92977.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351588|gb|ADP92979.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351590|gb|ADP92980.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351594|gb|ADP92982.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351596|gb|ADP92983.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351598|gb|ADP92984.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351604|gb|ADP92987.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351606|gb|ADP92988.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351608|gb|ADP92989.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351614|gb|ADP92992.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351616|gb|ADP92993.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351618|gb|ADP92994.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351620|gb|ADP92995.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351624|gb|ADP92997.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351634|gb|ADP93002.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351636|gb|ADP93003.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351652|gb|ADP93011.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351654|gb|ADP93012.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351656|gb|ADP93013.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351658|gb|ADP93014.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351660|gb|ADP93015.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351662|gb|ADP93016.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351664|gb|ADP93017.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351666|gb|ADP93018.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351668|gb|ADP93019.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351670|gb|ADP93020.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351672|gb|ADP93021.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351674|gb|ADP93022.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351676|gb|ADP93023.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351678|gb|ADP93024.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351680|gb|ADP93025.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351682|gb|ADP93026.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351686|gb|ADP93028.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351690|gb|ADP93030.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|299148114|ref|ZP_07041177.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
 gi|298514297|gb|EFI38183.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_23]
          Length = 511

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|239997108|ref|ZP_04717632.1| acetyl-CoA carboxylase [Alteromonas macleodii ATCC 27126]
          Length = 304

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    D+++  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADKNLKHVLLADESICIGKASATESYLNIPRIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NSIAIHPGYGFLAENADFAEAVEKSGFIFIGPKAETINLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLTDDVERNKAIAKRIGYPIIVKAAGGGGGRGMRVVRSEAELIKAIETTQAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 GNSTVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEQMR 253

Query: 226 EVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 TKIGDRCRRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|254487851|ref|ZP_05101056.1| pyruvate carboxylase [Roseobacter sp. GAI101]
 gi|214044720|gb|EEB85358.1| pyruvate carboxylase [Roseobacter sp. GAI101]
          Length = 1146

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   G+  I+ ++ +   +L+            E Y++ + L  
Sbjct: 150 QAAEVGYPLMLKASWGGGGRGMRPIESEKELEEKVLEGRREAEAAFGNGEGYLEKMILKA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L      +         ++  +       PA    +    E+  L       +
Sbjct: 210 RHVEVQILGDKHGEIYHLFERDCSVQRRNQKVVERAPAPYLTEAQRAEICELGRKICAHV 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D    K +++E+N +
Sbjct: 270 NYECAGTVEFLMDMADDKFYFIEVNPR 296


>gi|255956825|ref|XP_002569165.1| Pc21g21940 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211590876|emb|CAP97091.1| Pc21g21940 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2246

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 494 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKHERPDAIYV 553

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E  E+     G     +   + R     S   +        S  
Sbjct: 554 TFGGQTALSVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMDSINEKCAKSASAS 613

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               ++     I  P +++       LG    +    +    L + +     Q+LIE+ +
Sbjct: 614 TLEESLSVVEEIGFPVIVRAAYALGGLGSGFAEDMDQLKE--LCTKALAVSPQVLIERSM 671

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 672 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 730

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 731 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 780


>gi|148711807|gb|ABR02330.1| D-alanine-D-alanine ligase [Streptococcus pneumoniae]
          Length = 147

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/143 (29%), Positives = 70/143 (48%), Gaps = 5/143 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  ++ P   KP   GSS+GI   +  + +   L  +    +  ++L+EQ VD  E+  G
Sbjct: 7   EEKLTYPVFTKPSNMGSSVGISKSENQEELRQALKLAF--QYDSRVLVEQGVDAREIEVG 64

Query: 181 VMGDASLDVTEI--AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
           ++G+  +  T     V    FY Y+ KY     T  +PAKI  D+   +++ A  A +AI
Sbjct: 65  LLGNYDVKSTLPGEVVKDVAFYDYDAKYIDNKITMDIPAKISDDVVAVMRQNAETAFRAI 124

Query: 239 GCRGISRSDFLFDPLSRKVFWLE 261
           G  G+SR DF +     ++F  E
Sbjct: 125 GGLGLSRCDFFYTDK-GEIFPNE 146


>gi|120401370|ref|YP_951199.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119954188|gb|ABM11193.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 665

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +++ +  +   +  +             +++    +  
Sbjct: 155 AADIGFPILVKAAFGGGGRGMRIVRGEHELVEAVASARREAASAFGDGTVFLEKFVESPR 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       +   V         ++          P+    + +  E+ R A  A +A+ 
Sbjct: 215 HIEVQIFGDSHGTVVHLGERECSIQRRYQKIIEEAPSTAVDERLRDELGRAAVAAGKALS 274

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+  P     ++LE+N +
Sbjct: 275 YEGAGTVEFVMAP-DGSFYFLEVNTR 299


>gi|78778447|ref|YP_396559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9312]
 gi|78711946|gb|ABB49123.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. MIT 9312]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++   ++      +       + +    + +      
Sbjct: 148 ADDIGYPVIIKATAGGGGRGMRLVENADNLEKMFKAAQGEAEAAFGNDGLYMEKFIKKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D S +V  +            +             I  ++ K++   A  A 
Sbjct: 208 HVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINTELRKKMGNAAIAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++IG  G    +FL D      +++E+N +
Sbjct: 264 KSIGYEGAGTVEFLVD--DDNFYFMEMNTR 291


>gi|34525894|emb|CAE46627.1| acetyl-CoA carboxylase [Brassica juncea]
          Length = 347

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 60/183 (32%), Gaps = 5/183 (2%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
             + +       S  V     +     +      + S  ++  P +IK   GG   GI  
Sbjct: 2   PWSGSHVKIPPDSSLVTIPEEIYRQACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRK 61

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +     +     Q      G  + I +       L   ++ D   +V+ +          
Sbjct: 62  VHNADEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSVQRR 121

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K        V P     +  K++++      +++   G +  ++L+   + + ++LE+
Sbjct: 122 HQKIIEEGPITVAPQ----ETIKKLEQAGRRLAKSVNYVGAATVEYLYSMDTGEYYFLEL 177

Query: 263 NVQ 265
           N +
Sbjct: 178 NPR 180


>gi|295675956|ref|YP_003604480.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1002]
 gi|295435799|gb|ADG14969.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1002]
          Length = 404

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 77/270 (28%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRAHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++        L E+  T      +       R                       
Sbjct: 87  EAIATDELAAIETEALAEVIPTARATQLTMNREGIRRLAAEELGLATSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V+++D  I      +      +  ++++E ++D   
Sbjct: 147 AGIAKVGYPCVVKPVMSSSGKGQSVLRRDADIEPAWQYAMAGGRVNFGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A                  ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAIDPANGAVSTYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREIAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|240949921|ref|ZP_04754242.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor NM305]
 gi|240295640|gb|EER46353.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor NM305]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSVKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                     R   +    I  P +IK   GG   G+ V+  ++ +   +  + +     
Sbjct: 133 GSDGPVGNDARKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
                 Y++        +    L  T             ++          P   I  ++
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 253 RKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|160883496|ref|ZP_02064499.1| hypothetical protein BACOVA_01465 [Bacteroides ovatus ATCC 8483]
 gi|156111216|gb|EDO12961.1| hypothetical protein BACOVA_01465 [Bacteroides ovatus ATCC 8483]
          Length = 511

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|288553213|ref|YP_003425148.1| pyruvate carboxylase [Bacillus pseudofirmus OF4]
 gi|288544373|gb|ADC48256.1| pyruvate carboxylase [Bacillus pseudofirmus OF4]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 77/240 (32%), Gaps = 10/240 (4%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K     + +H   G   E+       +   I +    +    + 
Sbjct: 61  KPIDAYLDIENIIEVAKLHDV-DAIHPGYGFLSENIDFATRCKEEGIIFIGPELEHLIMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +L              P++IK   GG   G+ +++ 
Sbjct: 120 GDKVQARTQAVKANLPVIPGSDGPVLSLEEVEKFGEEHGYPFIIKASLGGGGRGMRIVRS 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +     ++ S         E YV+        +    L     +          ++ 
Sbjct: 180 KSEMKESYERAKSEAKSAFGNDEVYVEKFIENPKHIEVQILADKHGSTVHLYDRDCSVQR 239

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  + P+    +++ + +   A    + +        +FL    + + +++E+N +
Sbjct: 240 RHQKVVEIAPSVSLDIELRERICAAAVQLMENVNYLNAGTVEFLVT-DTGEFYFIEVNPR 298


>gi|149927198|ref|ZP_01915455.1| acetyl-CoA carboxylase subunit A [Limnobacter sp. MED105]
 gi|149824137|gb|EDM83358.1| acetyl-CoA carboxylase subunit A [Limnobacter sp. MED105]
          Length = 449

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +     V      L  +                          
Sbjct: 14  ALRILRACKEMGIKTVAVYSTADVDAKYVKLADESVCIGPPSSKESYLNIPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +K+ + + GVP  P 
Sbjct: 74  DSEAIHPGYGFLSENASFADRVEKSGFVFIGPRAESILLMGDKVSAKRAMIAAGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    R  +     +  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 SEGELPDDPREIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L                ++          P   IP  + 
Sbjct: 194 NNPAVYMEKFLENPRHIEIQILADEHKNAVWLGERDCSMQRRHQKVIEEAPAPNIPRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 ERIGERCAEACRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|86450129|gb|ABC96253.1| carbamoylphosphate synthetase [Rhamphomyia sp. 'Lake']
          Length = 1298

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 429 TFGGQTALNCGVELERAKIFTKYNVKIMGTPIQSIIETEDRKIFSERVAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALEAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|323337046|gb|EGA78302.1| Ura2p [Saccharomyces cerevisiae Vin13]
          Length = 2214

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNXAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|307302497|ref|ZP_07582254.1| pyruvate carboxylase [Sinorhizobium meliloti BL225C]
 gi|307316173|ref|ZP_07595617.1| pyruvate carboxylase [Sinorhizobium meliloti AK83]
 gi|306898013|gb|EFN28755.1| pyruvate carboxylase [Sinorhizobium meliloti AK83]
 gi|306903167|gb|EFN33757.1| pyruvate carboxylase [Sinorhizobium meliloti BL225C]
          Length = 1152

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +     
Sbjct: 156 AEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERAR 215

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++  +       PA    D   +E+   +    +A  
Sbjct: 216 HVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLNDAQRQELADYSLKIARATN 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L D  + K +++E+N +
Sbjct: 276 YIGAGTVEYLMDSDTGKFYFIEVNPR 301


>gi|260220045|emb|CBA27190.1| Biotin carboxylase [Curvibacter putative symbiont of Hydra
           magnipapillata]
          Length = 449

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKAVMVYSEADREAKYVKLAEEAVCIGPAPSGLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRIMGDKVSAKQAMIRAGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 SEGELPDDPVAMKRIAKAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L                ++          PA  I   + 
Sbjct: 194 NNPAVYMEKFLQNPRHIEIQILADKHKNAVYLGERDCSMQRRHQKVLEESPAPGINRKLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+     + +++E+N +
Sbjct: 254 ERIGERCVAACKKIGYRGAGTFEFLY--EDGEFYFIEMNTR 292


>gi|256272131|gb|EEU07131.1| Ura2p [Saccharomyces cerevisiae JAY291]
 gi|290771103|emb|CAY80653.2| Ura2p [Saccharomyces cerevisiae EC1118]
 gi|323348040|gb|EGA82298.1| Ura2p [Saccharomyces cerevisiae Lalvin QA23]
          Length = 2214

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNIAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|221503015|gb|EEE28725.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii VEG]
          Length = 3373

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +IK  +GG   GI  +   + +     Q  +   G  + + +   D   L 
Sbjct: 380 CCAKIGYPVMIKASEGGGGKGIRRVTNAEEVADAYRQVVNEVKGSPVFVMRMVSDCRHLE 439

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D S     +            K          P     ++  +++  A     A+
Sbjct: 440 VQLLADKSGRCVSLGSRDCSIQRRCQKIIEEGPVVAAPP----EVVSQMEDAACRMAMAV 495

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL+DP + +  +LE+N
Sbjct: 496 GYENAGTCEFLYDPKTHQFAFLEVN 520


>gi|221485607|gb|EEE23888.1| NBP2B protein, putative [Toxoplasma gondii GT1]
          Length = 3400

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +IK  +GG   GI  +   + +     Q  +   G  + + +   D   L 
Sbjct: 380 CCAKIGYPVMIKASEGGGGKGIRRVTNAEEVADAYRQVVNEVKGSPVFVMRMVSDCRHLE 439

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D S     +            K          P     ++  +++  A     A+
Sbjct: 440 VQLLADKSGRCVSLGSRDCSIQRRCQKIIEEGPVVAAPP----EVVSQMEDAACRMAMAV 495

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL+DP + +  +LE+N
Sbjct: 496 GYENAGTCEFLYDPKTHQFAFLEVN 520


>gi|219851648|ref|YP_002466080.1| pyruvate carboxylase subunit A [Methanosphaerula palustris E1-9c]
 gi|219545907|gb|ACL16357.1| Carbamoyl-phosphate synthase L chain ATP-binding [Methanosphaerula
           palustris E1-9c]
          Length = 491

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 74/280 (26%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQID------------VDRSVGL--------VLAHLKP-DLA--- 54
                 A ++ G +   I              D S  +         L   +  D+A   
Sbjct: 16  AIRVMRACKELGIESVAIYSTVDQNSLHVKYADESFLVGEAPPSKSYLNIERIIDIAKKS 75

Query: 55  -FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
               +H   G   E+           I +             K+ +K ++   GVP    
Sbjct: 76  GVEAIHPGYGFLAENADFAKRCLEEGIVFIGPFWKTIEAMGSKIGAKHMMRKAGVPVLPG 135

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +            I  P ++K   GG  +G+ ++  +  +   L            
Sbjct: 136 TPDGVTSIDEAKKVAAEIGYPVIVKASAGGGGIGMQIVNDEDGLESALSTGMRIAESAFG 195

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
               +++   +    +    L      V         ++          P   +   + +
Sbjct: 196 DPTVFIEKYLIKPRHIEFQVLADRRGHVVHLYDRECSIQRRHQKLVEEAPCPIMTPHLRE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A    +A         +FL+       +++E+N +
Sbjct: 256 RMSASAIAVAKACHYANAGTVEFLY--SGGNYYFMEMNTR 293


>gi|237842685|ref|XP_002370640.1| acetyl-coA carboxylase [Toxoplasma gondii ME49]
 gi|211968304|gb|EEB03500.1| acetyl-coA carboxylase [Toxoplasma gondii ME49]
          Length = 3399

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +IK  +GG   GI  +   + +     Q  +   G  + + +   D   L 
Sbjct: 379 CCAKIGYPVMIKASEGGGGKGIRRVTNAEEVADAYRQVVNEVKGSPVFVMRMVSDCRHLE 438

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D S     +            K          P     ++  +++  A     A+
Sbjct: 439 VQLLADKSGRCVSLGSRDCSIQRRCQKIIEEGPVVAAPP----EVVSQMEDAACRMAMAV 494

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL+DP + +  +LE+N
Sbjct: 495 GYENAGTCEFLYDPKTHQFAFLEVN 519


>gi|207344093|gb|EDZ71344.1| YJL130Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 1915

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNIAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|15967031|ref|NP_387384.1| pyruvate carboxylase [Sinorhizobium meliloti 1021]
 gi|15076304|emb|CAC47857.1| Pyruvate carboxylase [Sinorhizobium meliloti 1021]
          Length = 1152

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +     
Sbjct: 156 AEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERAR 215

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++  +       PA    D   +E+   +    +A  
Sbjct: 216 HVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLNDAQRQELADYSLKIARATN 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L D  + K +++E+N +
Sbjct: 276 YIGAGTVEYLMDSDTGKFYFIEVNPR 301


>gi|332527676|ref|ZP_08403721.1| pyruvate carboxylase [Rubrivivax benzoatilyticus JA2]
 gi|332112078|gb|EGJ12054.1| pyruvate carboxylase [Rubrivivax benzoatilyticus JA2]
          Length = 1162

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 74/235 (31%), Gaps = 14/235 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   E+      +    + +         +  +K+ ++  
Sbjct: 69  DDILRIARRAGVDAIHPG-YGFLSENPEFAERVIAAGLQWIGPSPEVMRVLGNKVAARHA 127

Query: 100 VSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             + GVPV P+                 I  P ++K   GG   G+ V++    +P  L 
Sbjct: 128 AVAAGVPVMPATPPLPREVDECRRLAEEIGFPVMLKASWGGGGRGMRVVESAAELPAALE 187

Query: 156 QSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            +       + + +    +       +   ++GD   ++  +            K     
Sbjct: 188 SARREALAAFGNDEVYFEKLIRRARHVEVQILGDRHGNLVHLHERDCTVQRRNQKVVERA 247

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               L A    ++       A    +++G       +FL D  + + +++E+N +
Sbjct: 248 PAPYLDAAARAELCD----SALRLMRSVGYTHAGTVEFLMDADTGRCWFIEVNPR 298


>gi|283956684|ref|ZP_06374163.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|283791933|gb|EFC30723.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
          Length = 443

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|227547860|ref|ZP_03977909.1| possible phosphoribosylglycinamide formyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
 gi|227080045|gb|EEI18008.1| possible phosphoribosylglycinamide formyltransferase
           [Corynebacterium lipophiloflavum DSM 44291]
          Length = 354

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 11/255 (4%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
            ++ A+A  D GF      +D  +       +P++   V  G       ++  +      
Sbjct: 18  AQSSAAAFADLGFDSYVGTLDEELPQW---ARPEITV-VCDGQVATTQQLEKFVAETGTY 73

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR--FTMDSQHLISPPYVIKPLKGG 136
              S    S     +   +      G+P       N           +  P V+KP    
Sbjct: 74  LVPSLDACSITRTREGIRRTAAEELGLPTMAYEFANSVGELAGCAEAVGYPCVVKPSISA 133

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G  V+     +     ++   N    + +E+YVD       +   +    T      
Sbjct: 134 GGCGHTVVHGPDDLDAAWQRARETNPEGAVAVERYVDFDYEVTIITARSVDPETGQLATW 193

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                     +        PA +        + +A      IG +G+   +   D    +
Sbjct: 194 FCEPIGTRHEAGRLVEAWQPAPLSEAAMDNARSIAARITGRIGAQGVYSIELFVD--GDE 251

Query: 257 VFWLEINVQP---GM 268
           V++ ++N +P   GM
Sbjct: 252 VYFSDVNPRPSPDGM 266


>gi|226312279|ref|YP_002772173.1| biotin carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226095227|dbj|BAH43669.1| probable biotin carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D      +G   E+     + +   I +   
Sbjct: 47  EAYCIGPTASKDSYLNMARIMTVALYTKADAIHPG-YGFLAENASFAQLCQDCSITFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              A     DK  +K  +S   VP+ P     I      +     I  P ++K   GG  
Sbjct: 106 DPEAITKMGDKSVAKATMSQANVPLVPGTDGLIDDIDEALQVAKKIGYPVIVKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V      +   + Q+             Y++        +    +           
Sbjct: 166 RGMRVAFDADELSKAIRQAQKEAETAFGNAGVYLEKYVEEPRHVEIQIMGDKHGNAVYLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+      + +++ + A  A +A+   G    +FL D    + 
Sbjct: 226 ERDCSIQRRHQKLVEEAPSPALDQTLREQMGQAAVAAAKAVSYHGAGTVEFLLDKH-GQF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|224825718|ref|ZP_03698822.1| Carbamoyl-phosphate synthase L chain ATP-binding [Lutiella
           nitroferrum 2002]
 gi|224601942|gb|EEG08121.1| Carbamoyl-phosphate synthase L chain ATP-binding [Lutiella
           nitroferrum 2002]
          Length = 694

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 47/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ +++K       L              +  V+      
Sbjct: 186 QADAIGYPVLIKASAGGGGKGMRIVEKSDDFLAALASCQREARASFGDDKVLVEKYLTRP 245

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +       +             ++          PA   P +  + +   A  A +A+
Sbjct: 246 RHVEIQVFADSLGDCVYLFERDCSVQRRHQKVLEEAPAPHLPTETRQAMGEAAVAAARAV 305

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +F+ D  S + +++E+N +
Sbjct: 306 GYVGAGTVEFIMDVDSGRFYFMEMNTR 332


>gi|330796945|ref|XP_003286524.1| aspartate carbamoyltransferase [Dictyostelium purpureum]
 gi|325083505|gb|EGC36956.1| aspartate carbamoyltransferase [Dictyostelium purpureum]
          Length = 2198

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 90/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                      SV  V+ +  PD    
Sbjct: 421 SGSQAIKALKEEGIKTIVINPNIATVQTSPGLADKVYFLPVNAASVQKVIENENPDGILV 480

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     ILE        + I     + D+    + +   +  +    +
Sbjct: 481 TFGGQTALNCGIELYKSGILEKHNCKVLGTQIETIIATEDRGIFAEKLAEINERIAPSMA 540

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P +++       LG         +   + ++ +     Q+L+E+
Sbjct: 541 CNSLEESIVEAEKIGYPVIVRAAYCLGGLGSGFADNKDQLIALVTEALAT--SSQVLVEK 598

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 599 SLKGW-KEIEYEVLRDSKDNCITVCNMENFDPLGIHTGESIVVAPSQTLTDKEYQMLRET 657

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 658 AIKTVRHLGVVGECNIQYALNPHSQEYCIIEVNAR--LSRSS--ALASKATGYPLA 709


>gi|315658572|ref|ZP_07911443.1| pyruvate carboxylase [Staphylococcus lugdunensis M23590]
 gi|315496361|gb|EFU84685.1| pyruvate carboxylase [Staphylococcus lugdunensis M23590]
          Length = 1148

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 68/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIAVAKEAGADAIHPG-YGFLSENEHFAHRCHEEGIKFIGPHLDHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +  +PV P     I               P +IK   GG   G+ ++++   +     
Sbjct: 126 AINADLPVIPGTDGPIENFESARAFADEAGYPLMIKATSGGGGKGMRIVREANELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEFGNIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     ++ +++   A      I        +FL        +++E+N +
Sbjct: 246 PSVGLSKELREKICNAALQLMTKIKYVNAGTVEFLVSGED--FYFIEVNPR 294


>gi|311351458|gb|ADP92914.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351460|gb|ADP92915.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351470|gb|ADP92920.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351480|gb|ADP92925.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351488|gb|ADP92929.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351490|gb|ADP92930.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351498|gb|ADP92934.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351568|gb|ADP92969.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351574|gb|ADP92972.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351586|gb|ADP92978.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVEDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|311351436|gb|ADP92903.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351440|gb|ADP92905.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351446|gb|ADP92908.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351502|gb|ADP92936.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351514|gb|ADP92942.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351518|gb|ADP92944.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351544|gb|ADP92957.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351578|gb|ADP92974.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351650|gb|ADP93010.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351688|gb|ADP93029.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|257419909|ref|ZP_05596903.1| pyruvate carboxylase [Enterococcus faecalis T11]
 gi|257161737|gb|EEU91697.1| pyruvate carboxylase [Enterococcus faecalis T11]
          Length = 1142

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDVKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|282859560|ref|ZP_06268665.1| carbamoyl-phosphate synthase, large subunit [Prevotella bivia
           JCVIHMP010]
 gi|282587788|gb|EFB92988.1| carbamoyl-phosphate synthase, large subunit [Prevotella bivia
           JCVIHMP010]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   KPD    
Sbjct: 28  SGSQALKALREEGISTVLINPNIATVQTSEGVADQIYYLPVQPYFVERVIEKEKPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G       IL+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVKLEQSGILKKHNVRVLGTPVAAIMNTEDRELFVERLDEIEVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +    L   ++    Q+L+E+
Sbjct: 148 CENIEQARIAAKDLGYPIIVRAAYALGGLGSGFADNEEELNK--LCEKAFAFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNTEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|262273278|ref|ZP_06051093.1| biotin carboxylase of acetyl-CoA carboxylase [Grimontia hollisae
           CIP 101886]
 gi|262222651|gb|EEY73961.1| biotin carboxylase of acetyl-CoA carboxylase [Grimontia hollisae
           CIP 101886]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 83/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL---------------AHLKPDLAFNVLH-- 59
                 A ++ G K   +    DR +  VL               ++L      +     
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADESICIGPASSVESYLNIPRIISAAEVT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVEQSGFIFVGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ +  +   +  + +     +
Sbjct: 134 SDGPLDDDAAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRSEAELTDAIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDMVYMEKFLENPRHVEVQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 AEMRKYIGERCCRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|260588104|ref|ZP_05854017.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Blautia
           hansenii DSM 20583]
 gi|260541631|gb|EEX22200.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Blautia
           hansenii DSM 20583]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +  +     + A L  +                             
Sbjct: 17  IIRACRELGIRTVAVYSEADKDALHAQLADEAVCIGPASSKDSYLNMERILSATIATKAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   + +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSRFAQMCEKCHVAFIGPSPEIIQKMGNKSEARKTMMQAGVPVIPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P +IK   GG   G+ V +K +    + L +   +        
Sbjct: 137 AVYTVEEGLSEAERIGFPVMIKASSGGGGKGMRVSEKKEDFTENFLMAQQESKNSFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L      V +       ++          P     + I +++ 
Sbjct: 197 MYIERYVRNPRHIEVQILGDKFGNVVQLGERDCSIQRRHQKLIEESPCCAISEKIREKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A+G       +FL D  S + F++E+N +
Sbjct: 257 ETARKAAKAVGYESAGTIEFLLDE-SGEFFFMEMNTR 292


>gi|189485168|ref|YP_001956109.1| carbamoyl-phosphate synthase arginine-specific large chain
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
 gi|170287127|dbj|BAG13648.1| carbamoyl-phosphate synthase arginine-specific large chain
           [uncultured Termite group 1 bacterium phylotype Rs-D17]
          Length = 1103

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 93/303 (30%), Gaps = 34/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ALE+ G +V  I+ +                       V  ++   KP    +
Sbjct: 36  SGSQAVEALEEEGLEVIVINPNIASVQTNKAANKRVYLYPVTPFWVEKIIKIEKPAAIIS 95

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G        +     IL+   +    + + A  +S D+     K       V    +
Sbjct: 96  SFGGQTSLNCVIELEKSGILKKYNVKVLGTQVNALEMSEDRELFAQKMKSIDAPVAKSHA 155

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG  +   D  +    L  S+     Q+LIE+
Sbjct: 156 VSTVKEALETAEQIGYPVITRSAFALGGLGSGLAATDAELKK--LTQSALMSSPQVLIEK 213

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +       T       +F    +                ++    ++ +
Sbjct: 214 SLHGWKEIEYEVMRDKTGNTITICNMENFDPMGIHTGDSIVIAPCQTINNIE-NNMLRDM 272

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q +G  G     +  +P     + +EIN +  ++  S     +   GY    +  
Sbjct: 273 AIKIAQNVGIVGECNVQYALNPKDYGFYVIEINAR--LSRSS--ALASKATGYPIAYIAA 328

Query: 291 WMV 293
            +V
Sbjct: 329 KIV 331


>gi|86450093|gb|ABC96235.1| carbamoylphosphate synthetase [Hesperempis sp. JKM-2006]
          Length = 1276

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVRIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       Q +   +L   +  H +QL+I++
Sbjct: 488 VYSVAEALEAAETLGYPVMARAAFSLGGLGSGFASNQQEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|78044884|ref|YP_359765.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77996999|gb|ABB15898.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 517

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++   + +   +  ++          + Y++     C 
Sbjct: 145 ADEIGYPVIVKAAGGGGGRGMRIVHTPKELEEAIQSAAREAASTFGNSKLYLEKYLQDCR 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAIG 239
            +    L                L+  +       P  +  +  ++     A  +  A+ 
Sbjct: 205 HVEFQILADQYGNAVYLGERDCSLQRRNQKVIEEGPCHVLTERMRKKMGELAVRSAMAVH 264

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 265 YAGAGTVEFLLDDRGN-FYFIEMNTR 289


>gi|54293373|ref|YP_125788.1| hypothetical protein lpl0422 [Legionella pneumophila str. Lens]
 gi|53753205|emb|CAH14652.1| hypothetical protein lpl0422 [Legionella pneumophila str. Lens]
          Length = 484

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 9/240 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           E+ G  V  ID  ++    +A    D  F     +        +     E         +
Sbjct: 220 EELGLNVDIID--KNEAKAIAE--YDALFIRATTSVNHYTYRVSRRAAQENLVVIDDPQS 275

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                +K+   +++SS  +    ++ +          I  P V+K      S G++ I  
Sbjct: 276 IIKCSNKVYLAELLSSHQIMTPDTLFI-SKYDKELPKIEFPCVLKKPDSAFSHGVVKIDD 334

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++S+   L Q    +    ++        +   G++ + +L      + K  +  Y+   
Sbjct: 335 EKSLQKSLNQFFKNS-DLVVVQPFIPTEFDWRIGILDNKALFACRYFMAKGHWQIYDWHC 393

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              N           ++ +++ ++A  + + IG  G+   D        K + +E+N  P
Sbjct: 394 QEENKEGDSETLPLHEVPEQIIKIALKSTRLIGD-GLYGVD--IKSHGNKYYVIEVNDNP 450


>gi|52840624|ref|YP_094423.1| ribosomal protein S6 modification protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|54296416|ref|YP_122785.1| hypothetical protein lpp0446 [Legionella pneumophila str. Paris]
 gi|148361004|ref|YP_001252211.1| ribosomal protein S6 modification protein [Legionella pneumophila
           str. Corby]
 gi|296105929|ref|YP_003617629.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Legionella pneumophila 2300/99
           Alcoy]
 gi|52627735|gb|AAU26476.1| ribosomal protein S6 modification protein [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|53750201|emb|CAH11594.1| hypothetical protein lpp0446 [Legionella pneumophila str. Paris]
 gi|148282777|gb|ABQ56865.1| ribosomal protein S6 modification protein [Legionella pneumophila
           str. Corby]
 gi|295647830|gb|ADG23677.1| Glutathione synthase/Ribosomal protein S6 modification enzyme
           (glutaminyl transferase) [Legionella pneumophila 2300/99
           Alcoy]
 gi|307609190|emb|CBW98651.1| hypothetical protein LPW_04621 [Legionella pneumophila 130b]
          Length = 484

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 9/240 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           E+ G  V  ID  ++    +A    D  F     +        +     E         +
Sbjct: 220 EELGLNVDIID--KNEAKAIAE--YDALFIRATTSVNHYTYRVSRRAAQENLVVIDDPQS 275

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                +K+   +++SS  +    ++ +          I  P V+K      S G++ I  
Sbjct: 276 IIKCSNKVYLAELLSSHQIMTPDTLFI-SKYDKELPKIEFPCVLKKPDSAFSHGVVKIDD 334

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           ++S+   L Q    +    ++        +   G++ + +L      + K  +  Y+   
Sbjct: 335 EKSLQKSLNQFFKNS-DLVVVQPFIPTEFDWRIGILDNKALFACRYFMAKGHWQIYDWHC 393

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              N           ++ +++ ++A  + + IG  G+   D        K + +E+N  P
Sbjct: 394 QEENKEGDSETLPLHEVPEQIIKIALKSTRLIGD-GLYGVD--IKSHGNKYYVIEVNDNP 450


>gi|126461634|ref|YP_001042748.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17029]
 gi|126103298|gb|ABN75976.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodobacter
           sphaeroides ATCC 17029]
          Length = 666

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 21/186 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   +  +      S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     A    +A+G 
Sbjct: 209 IEIQVLADNHGNCVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQACALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIR 314

Query: 295 DASCLR 300
            A+  +
Sbjct: 315 VAAGEK 320


>gi|325269245|ref|ZP_08135864.1| carbamoyl-phosphate synthase, large subunit [Prevotella multiformis
           DSM 16608]
 gi|324988474|gb|EGC20438.1| carbamoyl-phosphate synthase, large subunit [Prevotella multiformis
           DSM 16608]
          Length = 1074

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +LE   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELDKTGVLEKYHVKVLGTPVKAIMDTEDRELFVERLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +  D L   +++   Q+L+E+
Sbjct: 148 CEDIRQARLAAKTLGYPVIVRAAYALGGLGSGFADNEEEL--DALCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|225848336|ref|YP_002728499.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
 gi|225643904|gb|ACN98954.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium azorense Az-Fu1]
          Length = 448

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 6/216 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    AI E   I +         L+ DK  +++      VP+ P  
Sbjct: 79  DAVYPG-YGFLAENPNFAAICEKSNIKFIGPSSKTLKLTGDKAAAREAAKKANVPIIPGS 137

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +   +  ++    I  P +IK   GG   G+ V+  DQ +   L  +           
Sbjct: 138 PPVDQLKDALEVASKIGYPVLIKAAAGGGGRGMRVVHNDQELTRLLPLAQREAESAFGDK 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L      +         ++          P+    +  ++  
Sbjct: 198 TVYIEKFIENPKHIEIQILADEYGNIIHLGERECSVQRRHQKLIEESPSPFIDEKIRKEM 257

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              A    +A+G  G    +F+ D      +++E+N
Sbjct: 258 GEAAVRFAKAVGFTGAGTVEFIVDKDKN-FYFIEMN 292


>gi|162447321|ref|YP_001620453.1| acetyl-CoA carboxylase, biotin carboxylase [Acholeplasma laidlawii
           PG-8A]
 gi|161985428|gb|ABX81077.1| acetyl-CoA carboxylase, biotin carboxylase [Acholeplasma laidlawii
           PG-8A]
          Length = 459

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V   D         +S            Y++       
Sbjct: 149 AKQIGYPIMIKASSGGGGRGISVCHNDTEFKKAFDMTSMEAESAFGDKSVYIEKFVENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +  ++  V         ++  +       P+ I  + + +++ + A    + +G
Sbjct: 209 HIEIQIIADSKGNVVHLYERDCSMQRRNQKLIEEAPSSILNEDLRRKMGQSAVKLAKHVG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      +++E+N +
Sbjct: 269 YENAGTIEFLVDSRKN-YYFIEMNTR 293


>gi|160895457|ref|YP_001561039.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160361041|gb|ABX32654.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 465

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 48/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V   +  +      +++         E Y++       
Sbjct: 151 AKDIGYPIMIKASAGGGGRGIRVAHDEAELRQQFATATAEAQAAFGNGEVYLERFIRQAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   +  V   +      +           A I       +   A     A+  
Sbjct: 211 HIEVQILGDGQRVVHCFERECSLQRRRQKVWEEAPSAAISEATRAALCESALRLAHAVAY 270

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++L+D  +R+ F++E+N +
Sbjct: 271 RGAGTLEYLYDDDTREFFFIEMNTR 295


>gi|1695686|dbj|BAA12072.1| pyruvate carboxylase [Geobacillus stearothermophilus]
          Length = 1147

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/286 (11%), Positives = 83/286 (29%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---------------------------VLAHLKP 51
                 A  + G +   I     VG                            ++   K 
Sbjct: 18  AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKA 77

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + +H   G F E+           I +         +  DK++++    + G+PV 
Sbjct: 78  HDV-DAIHPGYGFFSENIQFAKRCREEGIIFFGPNENHLDMFGDKVKARHAAVNAGIPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P     +      +        P +IK   GG   G+  ++    +     ++ S     
Sbjct: 137 PGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRFVRSKSEVKEAFERAKSEAKAA 196

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   +  + +   +   +   ++GD   ++  +            +             +
Sbjct: 197 FGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQ----RRHQKVVEVAPSVSL 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ + +   A    +++G       +FL      + +++E+N +
Sbjct: 253 SDELRQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|330863039|emb|CBX73171.1| carbamoyl-phosphate synthase large chain [Yersinia enterocolitica
           W22703]
          Length = 874

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 385 ALREDGYETIMVNCNPETVSTDYDTSDRLYFESVTLEDVLEIVRIEKPQGVIVQYGGQTP 444

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 445 LKLARELEAAGVPIIGTSPDAIDRAEDRERFQQAVNRLGLKQPANATVATIEQAVEKAAG 504

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 505 LGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQNAVSVSNDAPVLLDRFLDD---AVEVDV 561

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D   + +     +  +    S +S   LPA     +I   +++        +  RG
Sbjct: 562 DAICDGERVLIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRQQVEKLAFELCVRG 621

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 622 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGMPLAKVAAR 664



 Score = 37.5 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 14/83 (16%)

Query: 222 DIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------- 272
             Y+ ++  +    + IG   G S   F  +P + ++  +E+N  P ++  S        
Sbjct: 56  KEYQIMRNASMAVLREIGVETGGSNVQFSVNPKNGRLIVIEMN--PRVSRSSALASKATG 113

Query: 273 -IFPEMAA--YAGYSFRELLLWM 292
               ++AA    GY+  EL+  +
Sbjct: 114 FPIAKIAAKLAVGYTLDELMNDI 136


>gi|302123163|gb|ADK93169.1| CAD [Leopoldius coronatus]
          Length = 1259

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 336 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 395

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 396 TFGGQTALNCGVELERAGVFSKYNVEILGTPIQSIIETEDRKIFAERVNEIGEQVAPSEA 455

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +L     + +   +  P + +       LG      +  +    L   +  + +QL+I++
Sbjct: 456 VLSVEEALKAAQRLGYPVMARAAFSLGGLGSGFANNESELEA--LAHQALAYSNQLIIDK 513

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 514 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 572

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 573 AIKVIRHFGVVGECNIQYALSPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 628

Query: 291 WM 292
            +
Sbjct: 629 KL 630


>gi|86450117|gb|ABC96247.1| carbamoylphosphate synthetase [Heterophlebus sp. 'Stripe']
          Length = 1293

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFSKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAQALDAAEILGYPVMARAAFSLGGLGSGFANNIEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|73542551|ref|YP_297071.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ralstonia
           eutropha JMP134]
 gi|72119964|gb|AAZ62227.1| Acetyl-CoA carboxylase, biotin carboxylase [Ralstonia eutropha
           JMP134]
          Length = 450

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V+  + ++   +  +       + + +  + +   +  
Sbjct: 149 ARRVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNPEVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D       +            K         +P +    + + +      A 
Sbjct: 209 HVEIQILADQHKQAIWLGERDCSMQRRHQKVIEEAPAPHIPRR----LIERIGDRCAEAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +G RG    +FL+   + + +++E+N +
Sbjct: 265 RKMGYRGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|311351626|gb|ADP92998.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351632|gb|ADP93001.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351638|gb|ADP93004.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351684|gb|ADP93027.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--R 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNVPYVLEVNT 196


>gi|311351418|gb|ADP92894.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351426|gb|ADP92898.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351452|gb|ADP92911.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351462|gb|ADP92916.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351494|gb|ADP92932.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIEGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|257465271|ref|ZP_05629642.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor 202]
 gi|257450931|gb|EEV24974.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           minor 202]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 82/282 (29%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSVKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                     R   +    I  P +IK   GG   G+ V+  ++ +   +  + +     
Sbjct: 133 GSDGPVGNDARKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
                 Y++        +    L  T             ++          P   I  ++
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 253 RKFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|226304927|ref|YP_002764885.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus
           erythropolis PR4]
 gi|226184042|dbj|BAH32146.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus
           erythropolis PR4]
          Length = 411

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 72/269 (26%), Gaps = 23/269 (8%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D   D                   ++  V+   KP      +
Sbjct: 37  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHTVDMTDPEALLAVIELEKPHFVVPEI 96

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +   +        +  T      +       R                       
Sbjct: 97  EAIATDALALVEERGAAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLAEVQ 156

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P VIKP+   S  G   ++  + +      + +        +I +     + 
Sbjct: 157 AATDRIGFPCVIKPVMSSSGKGQSTVRSAEDLDAAWDYAMAGGRVNHGRVIVEGFVDFDY 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +   ++  +             L+ +        P ++        + +A     A
Sbjct: 217 EITQLTVRAVGESGQVETSFCEPIGHLQEAGDYIESWQPQQMSAVALASARDVAEKVTTA 276

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G RGI   +         VF+ E++ +P
Sbjct: 277 LGGRGIFGVELFV--KGDDVFFSEVSPRP 303


>gi|167750665|ref|ZP_02422792.1| hypothetical protein EUBSIR_01642 [Eubacterium siraeum DSM 15702]
 gi|167656344|gb|EDS00474.1| hypothetical protein EUBSIR_01642 [Eubacterium siraeum DSM 15702]
 gi|291558253|emb|CBL35370.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium siraeum
           V10Sc8a]
          Length = 449

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 84/282 (29%), Gaps = 42/282 (14%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +        + A +  +                          
Sbjct: 14  AIRIIRACRELGVKTVAVYSTADKTALHAQIADEAVCIGPAPSKDSYLNSKALLAACEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     + +   I +   G  A     DK  +K+ +    VPV P 
Sbjct: 74  GAQAIHPGFGFLSENSHFVRLCDKCGIKFIGPGADAMDAMGDKANAKKTMIENDVPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWN 161
               +       +    I  P ++K   GG   GI +++K + +   +          + 
Sbjct: 134 SDGVVGTLEEAQEIAAKIGYPIMVKASAGGGGRGIRLVEKPEELEAAMTAAKQEAKQFFA 193

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + D  + +  V+   +   ++ D   +V  +            + +           +  
Sbjct: 194 NDDIYIEKFIVNPRHVEIQLLADEHGNVIYLGERDCSLQ----RRNQKVLEESPSPIMTE 249

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           D+ + +   A  A +A G       +FL D      +++E+N
Sbjct: 250 DLRRRMGEAAVRAAKACGYANAGTVEFLVD-KDLNFYFMEMN 290


>gi|28899655|ref|NP_799260.1| acetyl-CoA carboxylase biotin carboxylase subunit [Vibrio
           parahaemolyticus RIMD 2210633]
 gi|153839618|ref|ZP_01992285.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           AQ3810]
 gi|260361498|ref|ZP_05774545.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus K5030]
 gi|260895469|ref|ZP_05903965.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|260903323|ref|ZP_05911718.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|28807907|dbj|BAC61144.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           RIMD 2210633]
 gi|149746857|gb|EDM57845.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio parahaemolyticus
           AQ3810]
 gi|308088071|gb|EFO37766.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus Peru-466]
 gi|308109551|gb|EFO47091.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus AQ4037]
 gi|308112843|gb|EFO50383.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Vibrio
           parahaemolyticus K5030]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPARGIDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLDNDEDKNKAHAKRIGYPVIIKASGGGGGRGMRVVRAEKDLVQAIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D       +            +             I 
Sbjct: 194 NNDIVYMEKFLENPRHVEVQVIADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKYIGERCTRACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|307706074|ref|ZP_07642893.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK321]
 gi|307618474|gb|EFN97622.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK321]
          Length = 455

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S K +++E+N +
Sbjct: 257 S----AAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNTR 293


>gi|262165486|ref|ZP_06033223.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM223]
 gi|262025202|gb|EEY43870.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM223]
          Length = 377

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 8   GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 68  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SHYQFADSYESFA 126

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 127 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 184

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 185 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQMMSENAIKAAEYVAEQVVNAL 242

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 243 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 300

Query: 290 LW 291
            +
Sbjct: 301 QY 302


>gi|254883651|ref|ZP_05256361.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           4_3_47FAA]
 gi|254836444|gb|EET16753.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           4_3_47FAA]
          Length = 1073

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIHSVLVNPNIATIQTSEGIADKVYFLPVTPFFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLKKYGVEVLGTSVEAIIYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|254510847|ref|ZP_05122914.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacteraceae
           bacterium KLH11]
 gi|221534558|gb|EEE37546.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacteraceae
           bacterium KLH11]
          Length = 449

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   I +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENAEFVQIVEDHGITFIGPTAEHIRVMGDKITAKDTMKELGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +               P +IK   GG   G+ V      +    + + +     + + +
Sbjct: 137 GVPTLADAKRIGEEFGYPVIIKATAGGGGRGMKVAMSADEMESAFMTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++   A   I   G    +FL+   + + +++E+N +
Sbjct: 253 AKIGKVCADAVAKINYIGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|119872688|ref|YP_930695.1| carbamoyl phosphate synthase large subunit [Pyrobaculum islandicum
           DSM 4184]
 gi|119674096|gb|ABL88352.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum islandicum
           DSM 4184]
          Length = 1025

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 90/296 (30%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A  + G +   ++ +                     + +  V+   +PD    
Sbjct: 26  SGSQALKAFREEGIETVLVNPNIATIQTSKFLADRVYFVPIQRQFLAEVIERERPDAIAC 85

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V            +++  T    +  ALS D  +         +P    
Sbjct: 86  GFGGQTALSACVDLHDSGVLDKYGVKVVGTPIRGIKRALSRDLFQKAMREVGIPIPPSSP 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++        G  V + ++ +   + ++ + +   ++L+E+
Sbjct: 146 ARSPEEALKVAREIGYPVVVRVSFNLGGAGAFVARSEEDLRARVYKAFAQSAIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G +     +   + D     V   +     +              +  + Y++ + +
Sbjct: 206 YLEGWKEIEFEVVRDAYDNVAAVVCMENVDPMGVHTGDSIVVAPC-LTLTDEEYQKARNI 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +AI   G        +    + + +E N  P M+  S     +  +GY   
Sbjct: 265 SIGVARAIELVGEGNVQVAVNYAGPEQYAIETN--PRMSRSS--ALASKASGYPLA 316


>gi|312898980|ref|ZP_07758367.1| pyruvate carboxylase [Megasphaera micronuciformis F0359]
 gi|310619887|gb|EFQ03460.1| pyruvate carboxylase [Megasphaera micronuciformis F0359]
          Length = 1151

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/285 (12%), Positives = 84/285 (29%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVG-----------LVLAHLKP--------DLA----- 54
                 A  + G +   I                  LV    KP        D+      
Sbjct: 24  AIRVFRACNELGIRTVAIYSKEDSLSLHRFRADESYLVGKGKKPVDAYLDIEDIVRIAHE 83

Query: 55  --FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+  +    E   I +    +    +  DK+ ++      G+   P
Sbjct: 84  HDVDAIHPGYGFLSENAELAKRCEEEGIIFIGPKVEHLIMFGDKINARIQAKKAGIQFIP 143

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                ++           +  P ++K + GG   G+ ++ K   +     ++ S     +
Sbjct: 144 GSDGPVMNYAEVERFAKEVGLPIMLKAVNGGGGRGMRMVDKMADLKDAYERAKSEAKLAF 203

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              +  L +  ++   +   +MGD   +V  +            +             + 
Sbjct: 204 GSDEIYLEKCIINPKHIEVQIMGDEHGNVIHLFERDCSIQ----RRHQKVVEIAPAFSLS 259

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +++   A    + +        +FL      K +++E+N +
Sbjct: 260 KKLRQDICDAALKLMKNVNYVNAGTVEFLVT-SDEKFYFIEVNPR 303


>gi|255659175|ref|ZP_05404584.1| pyruvate carboxylase [Mitsuokella multacida DSM 20544]
 gi|260848626|gb|EEX68633.1| pyruvate carboxylase [Mitsuokella multacida DSM 20544]
          Length = 1141

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 77/239 (32%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+  +    E   I +    +    +  DK+ 
Sbjct: 64  LDI-EDIIRICKEHDVDAIHPG-YGFLSENAQLAKRCEEEGIIFIGPKVEHLQMFGDKVN 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +P+ P     +            +  P +IK + GG   G+  + + + + 
Sbjct: 122 ARIQAEKAEIPMIPGTNGAVKDFAEVKAFAERVGLPVMIKAINGGGGRGMRRVDRMEDLK 181

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +       ++   D  + +  ++   +   +MGD   +V  +            K 
Sbjct: 182 ESYEEARSEAKRAFGDEDVYVEKCILNPKHIEVQIMGDEHGNVIHLNERDCSIQRRHQKV 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP      + + +   A    + +        +FL D      +++E+N +
Sbjct: 242 IEMAPAWSLPK----KLRQNICAAALKIMKNVCYVNAGTVEFLADQDEEHFYFIEVNPR 296


>gi|167854854|ref|ZP_02477631.1| Biotin carboxylase [Haemophilus parasuis 29755]
 gi|167854033|gb|EDS25270.1| Biotin carboxylase [Haemophilus parasuis 29755]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A  + G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACRELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENANFAEQVENSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V+  ++ +   +  + +     
Sbjct: 133 GSGGPIGNDVAKNKEIAQKIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
                 Y++        +    L  T             ++          PA  I  ++
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 253 RQFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|54310472|ref|YP_131492.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photobacterium
           profundum SS9]
 gi|46914915|emb|CAG21690.1| putative acetyl-CoA carboxylase, biotin carboxylase [Photobacterium
           profundum SS9]
          Length = 447

 Score = 50.6 bits (119), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   I    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAIHSTADRDLKHVLLADETVCIGSAKSSESYLNIPRIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRMMGDKVSAITAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                             I  P +IK   GG   G+ V++ +  +   +  +       +
Sbjct: 134 SDGPLNDDEAKNKSFAKRIGFPVIIKASGGGGGRGMRVVRSEAELAEAIAMTRAEAKSFF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   +M D   +   +            +             I 
Sbjct: 194 NNDVVYMEKYLENPRHIEVQIMADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 EEMRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|296119019|ref|ZP_06837592.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295968117|gb|EFG81369.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 415

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/270 (14%), Positives = 83/270 (30%), Gaps = 27/270 (10%)

Query: 19  GKACASALEDAGFKVSQI------------------DVD--RSVGLVLAHLKPDLAFNVL 58
            K    A ++ G +V  +                  D+D  ++V  ++ HLKP      +
Sbjct: 8   AKGLVGAFQNLGLEVHVVDRYEGSPAQQVAHFSYTADIDNEKAVLDLVEHLKPQYVVPEI 67

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G   E       L             A  L+ D+ + ++V  S G+P     +V  F  
Sbjct: 68  EGVAVEALHA---LHDDSSTTVVPTARACELTSDRKKLREVAESLGLPTTAYKVVENFAD 124

Query: 119 DSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  +  P ++KP    S  G +++K    +               ++ E++VD   
Sbjct: 125 LEAAVEELGLPCIVKPDVATSGRGHVLVKDHDQLKDAWDNVRRGKKNSWVVAERFVDFDY 184

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +    T                         P ++    ++  + +A     
Sbjct: 185 EVIIMAVRSIDPETGKLATWFSEPIGYEHAQGNLVDCWQPKRMSQRAFENARSVAARISN 244

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +G RGI   +         +++  +  +P
Sbjct: 245 ELGGRGIFAVELFV--AGDDIYFSSVTPRP 272


>gi|295694976|ref|YP_003588214.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Bacillus
           tusciae DSM 2912]
 gi|295410578|gb|ADG05070.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Bacillus
           tusciae DSM 2912]
          Length = 446

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/190 (13%), Positives = 58/190 (30%), Gaps = 21/190 (11%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
           M++   I  P ++K   GG  +G+  ++  + +      + +           +++    
Sbjct: 146 MEAAEGIGYPLMVKASAGGGGIGMSRVETPEELKKTFESTRARAVNFFGDGALFLEKWVE 205

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQ 236
               +                     ++          P+    D  +  +   A     
Sbjct: 206 GPRHIEVQVAVDAHGNAVHLFERECSVQRRHQKVVEESPSPFLNDAMRERLTAAALRGAT 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLL 290
           AIG R +   +FLFD      ++LE+N +              +       G    +L+ 
Sbjct: 266 AIGYRNLGTMEFLFDAKGN-FYFLEMNTR----------LQVEHPVTELITGL---DLVE 311

Query: 291 WMVEDASCLR 300
           W +  A+  R
Sbjct: 312 WQIRIAAGER 321


>gi|289551073|ref|YP_003471977.1| Pyruvate carboxyl transferase [Staphylococcus lugdunensis HKU09-01]
 gi|289180605|gb|ADC87850.1| Pyruvate carboxyl transferase [Staphylococcus lugdunensis HKU09-01]
          Length = 1148

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 67/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIAVAKEAGADAIHPG-YGFLSENEHFAHRCHEEGIKFIGPHLDHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +  +PV P     I               P +IK   GG   G+ ++++   +     
Sbjct: 126 AINADLPVIPGTDGPIENFESARVFADEAGYPLMIKATSGGGGKGMRIVREANELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEFGNIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     ++  ++   A      I        +FL        +++E+N +
Sbjct: 246 PSVGLSKELRGKICNAALQLMTKIKYVNAGTVEFLVSGED--FYFIEVNPR 294


>gi|218459712|ref|ZP_03499803.1| putative urea amidolyase protein [Rhizobium etli Kim 5]
          Length = 377

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/180 (15%), Positives = 56/180 (31%), Gaps = 18/180 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ +    +S+                    Y++        + 
Sbjct: 34  IGYPVMLKSTAGGGGIGMQLCADPESLRASFESVQRTARASFGDARVYIERFVAEARHVE 93

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                     V         L+  +       PA          + + A     ++    
Sbjct: 94  VQIFGDGRGNVIALGERDCSLQRRNQKVVEETPAPGLSAATRGRLHKAAVDLGASVSYES 153

Query: 243 ISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               +F++DPL  + ++LE+N       P +T         A  G    +L+ WM+  A+
Sbjct: 154 AGTIEFIYDPLREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIRQAA 201


>gi|149244854|ref|XP_001526970.1| urea amidolyase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146449364|gb|EDK43620.1| urea amidolyase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 1859

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 91/318 (28%), Gaps = 59/318 (18%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
               L+  G K   I  D D+     L     D+A   LHG       +     +     
Sbjct: 674 IIKTLKKLGIKSIAIYSDPDKYAEHALIA---DVAVP-LHGTTAAQTYIDIDKVIKAAKD 729

Query: 80  THSGIL---ASALSMDKMRSKQVVSSCGVPVCPS-------------------------- 110
           T +  +      LS +   S +      V V PS                          
Sbjct: 730 TGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEAAGVPLVP 789

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +  ++   +    +  P ++K   GG  +G+  +  ++ I                
Sbjct: 790 GSGLVKDSKEAKEIAAKLEYPVMVKSTAGGGGIGLQKVDSEKDIERVFQTVQHQGLSYFG 849

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
               +++        +    L                L+  +       PA    +   +
Sbjct: 850 DSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQKIIEETPAPDLPEATRQ 909

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
           ++++ A     ++  +     ++++DP   + ++LE+N +              +     
Sbjct: 910 KMRKAAESLGASMKYKCAGTVEYIYDPKRDEFYFLEVNAR----------LQVEHPITEM 959

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+ WM+  A+
Sbjct: 960 VTGL---DLVEWMLLIAA 974


>gi|145613560|ref|XP_363611.2| conserved hypothetical protein [Magnaporthe oryzae 70-15]
 gi|145020621|gb|EDK04750.1| conserved hypothetical protein [Magnaporthe oryzae 70-15]
          Length = 2241

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 470 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKYERPDAIYV 529

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E  E+     G     +   + R     S   +        S  
Sbjct: 530 TFGGQTALSVGIQLKDEFEELGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 589

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + +     Q+LIE+ +
Sbjct: 590 SVDECMRVVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKALAASPQVLIERSM 647

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 648 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 706

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 707 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 756


>gi|328712262|ref|XP_003244765.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like isoform 2 [Acyrthosiphon pisum]
          Length = 647

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 19/250 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LH---GNFGEDGLVQAILELLEIPYT 80
           +  ++   +S    L     D   N         +H   G   E+       +  ++ + 
Sbjct: 8   QAVRVGPAQSAHSYLLK---DRIVNAAIKTNSQAIHPGYGFLSENASFAQYCQSNDLIFI 64

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGG 136
                A      K +SK+++S  GVPV          + F     + I  P +IK +KGG
Sbjct: 65  GPPPNAIESMGIKSKSKEIMSEAGVPVIEGYHGKDQNSDFLQHEANKIGYPVMIKAIKGG 124

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ ++ K+     +L+ +   +          ++        +              
Sbjct: 125 GGKGMKIVSKESEFFENLMSAKRESLSSFGDDSVLIEKYIQQPRHVEVQVFADQHKNCVY 184

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          PA    + + + +   A  A +A+G  G    +F+FD  + 
Sbjct: 185 LFERDCSVQRRHQKVMEEAPAPRLSESLRQHLGETAVRAAKAVGYEGAGTVEFIFDNTTN 244

Query: 256 KVFWLEINVQ 265
             +++E+N +
Sbjct: 245 MFYFMEMNTR 254


>gi|321470897|gb|EFX81871.1| hypothetical protein DAPPUDRAFT_302840 [Daphnia pulex]
          Length = 712

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/283 (17%), Positives = 84/283 (29%), Gaps = 31/283 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSGI 84
             ++    SV   L   K  + AF      +H   G   E+     +     I +     
Sbjct: 86  AIRLGPASSVESYLRQDKVLEAAFRTGAQAIHPGYGFLSENVEFAELCSKEGIIFIGPPA 145

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLG 140
            A      K  SK ++S+ GVPV         T          I  P +IK ++GG   G
Sbjct: 146 SAIRDMGIKSTSKHIMSAAGVPVIHGYHGVDQTDERLRHEAEKIGFPLMIKAVRGGGGKG 205

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + +          L  +              ++        +                  
Sbjct: 206 MRIALTPSEFETQLESAKREAQKSFGDQVMLLERYVERPRHVEVQVFGDKYDNYVYLFER 265

Query: 201 SYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
              ++          P   I  +  K++   A  A +A+G  G    +F+ DP     F+
Sbjct: 266 DCSVQRRHQKIIEEAPGPGISSETRKQLGEAAVRAARAVGYVGAGTVEFIMDPQQN-FFF 324

Query: 260 LEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +E+N       P         EM      +  +L+ W +  AS
Sbjct: 325 MEMNTRLQVEHP-------VSEM-----ITNTDLVEWQLRVAS 355


>gi|309791144|ref|ZP_07685677.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
 gi|308226842|gb|EFO80537.1| carbamoyl-phosphate synthase L chain ATP-binding [Oscillochloris
           trichoides DG6]
          Length = 509

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/223 (18%), Positives = 80/223 (35%), Gaps = 18/223 (8%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+      +    + +         L  DK+R+K++     VP  P I 
Sbjct: 104 NAIHPGWGFLAENADFAQKVIDAGLIWIGPKPEVIRLMGDKIRAKEIAKQSNVPTVPGIE 163

Query: 113 VNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNH 162
                        +  ++ P +IK   GG   G++ I     I   L Q       S+  
Sbjct: 164 NVTSAEQIIEWMQKERVAFPIMIKAAAGGGGKGMVKIDSTDQIAAGLAQARSEAKKSFKD 223

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              L+ +    G  +   ++ D    V  +           L+  +       P+ +  D
Sbjct: 224 DTVLVEKYIEHGRHIEVQIVADEYQHVVHL-----YDRECTLQRRNQKIIEEAPSTLESD 278

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +E+   A    + IG       +F+F+P ++  ++LE+N +
Sbjct: 279 LRQEICVTAARLMRRIGYTSAGTVEFIFEPSTQSFYFLEVNTR 321


>gi|290463424|sp|A6ZMR9|HFA1_YEAS7 RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
           Includes: RecName: Full=Biotin carboxylase; Flags:
           Precursor
          Length = 2273

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|226939529|ref|YP_002794602.1| acetyl-CoA carboxylase biotin carboxylase subunit [Laribacter
           hongkongensis HLHK9]
 gi|226714455|gb|ACO73593.1| AccC [Laribacter hongkongensis HLHK9]
          Length = 450

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/213 (16%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +         L  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEQSGFVFIGPRAETIRLMGDKVSAKQAMIEAGVPCVPGSGGALTDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PAEITKMAREIGYPVIIKAAGGGGGRGMRVVHSEAALINSVNMTKTEAQAAFGNPTVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
               T   +    L                ++          PA  I      +V     
Sbjct: 202 KFLETPRHVEIQILADEYGHAIYLGERDCSMQRRHQKVIEEAPAPGITQKQRDKVGHACA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 EACRRIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|219871450|ref|YP_002475825.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           parasuis SH0165]
 gi|219691654|gb|ACL32877.1| biotin carboxylase subunit of acetyl CoA carboxylase [Haemophilus
           parasuis SH0165]
          Length = 447

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 81/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A  + G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACRELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENANFAEQVENSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V+  ++ +   +  + +     
Sbjct: 133 GSGGPIGNDVAKNKEIAQKIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
                 Y++        +    L  T             ++          PA  I  ++
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 253 RQFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|193706855|ref|XP_001948468.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like isoform 1 [Acyrthosiphon pisum]
          Length = 700

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 84/250 (33%), Gaps = 19/250 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LH---GNFGEDGLVQAILELLEIPYT 80
           +  ++   +S    L     D   N         +H   G   E+       +  ++ + 
Sbjct: 61  QAVRVGPAQSAHSYLLK---DRIVNAAIKTNSQAIHPGYGFLSENASFAQYCQSNDLIFI 117

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGG 136
                A      K +SK+++S  GVPV          + F     + I  P +IK +KGG
Sbjct: 118 GPPPNAIESMGIKSKSKEIMSEAGVPVIEGYHGKDQNSDFLQHEANKIGYPVMIKAIKGG 177

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ ++ K+     +L+ +   +          ++        +              
Sbjct: 178 GGKGMKIVSKESEFFENLMSAKRESLSSFGDDSVLIEKYIQQPRHVEVQVFADQHKNCVY 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          PA    + + + +   A  A +A+G  G    +F+FD  + 
Sbjct: 238 LFERDCSVQRRHQKVMEEAPAPRLSESLRQHLGETAVRAAKAVGYEGAGTVEFIFDNTTN 297

Query: 256 KVFWLEINVQ 265
             +++E+N +
Sbjct: 298 MFYFMEMNTR 307


>gi|151945911|gb|EDN64143.1| conserved protein [Saccharomyces cerevisiae YJM789]
          Length = 2123

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|1326008|emb|CAA89922.1| unknown [Saccharomyces cerevisiae]
          Length = 983

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|6323863|ref|NP_013934.1| Hfa1p [Saccharomyces cerevisiae S288c]
 gi|285814211|tpg|DAA10106.1| TPA: Hfa1p [Saccharomyces cerevisiae S288c]
          Length = 2123

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 168 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 228 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 283

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 284 YVSAGTVEYLYSPKDDKFYFLELNPR 309


>gi|388250|emb|CAA80280.1| HFA1 [Saccharomyces cerevisiae]
          Length = 825

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 194 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 253

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 254 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 309

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 310 YVSAGTVEYLYSPKDDKFYFLELNPR 335


>gi|88658245|ref|YP_507198.1| carbamoyl phosphate synthase large subunit [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599702|gb|ABD45171.1| carbamoyl-phosphate synthase, large subunit [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 1076

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+++  I         D + +    +               +P     
Sbjct: 29  SGTQACKVLKQEGYRIILINSNPATIMTDPEIADSTYIEPITSNIIEKIIIKERPSAILP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +     ILE   +    +   A   + D+   +Q +   GV    SI+
Sbjct: 89  TVGGQTALNAAINLCELGILEKYNVKLIGATKEAIKKAEDRNLFRQAMDKIGVKYPKSII 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D+   I  P +I+P      +G  +    +    ++    + +   ++ +++
Sbjct: 149 IRSVDEINDALEYIGLPAIIRPSFTLGGIGGGISYNKEEFHKNVSHGLNISPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +         ++  K     
Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P     +  +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNDNDLLVIEMN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHGDQLLIEQYVD 173
               +    +  P + +P        + +I+   ++   L    + ++HG  LL +    
Sbjct: 705 HEVYECIKDLVFPILARPSYVLGGQSMSIIRDSNALSNYLTTYKNIFDHGSLLLDQFLTH 764

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D         +   +       +S  ++  +    +  +I   +      
Sbjct: 765 AIEVDVDAICDGEKVYIAGIMEHIEEAG---VHSGDSACSLPSYSLTSEITDAIAEQTKK 821

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+  RG     +       +++ LE+N +   T     P +A   G    ++   ++
Sbjct: 822 IALALQVRGFINIQYAI--QDGEIYILEVNPRASRT----VPFIAKATGIPIAKIATEVL 875


>gi|2804173|dbj|BAA24410.1| acetyl-coenzyme A carboxylase like carboxylase [Saccharomyces
           cerevisiae]
          Length = 2273

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|1708192|sp|P32874|HFA1_YEAST RecName: Full=Acetyl-CoA carboxylase, mitochondrial; Short=ACC;
           Includes: RecName: Full=Biotin carboxylase; Flags:
           Precursor
          Length = 2273

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
             LI  P +IK  +GG   GI  +  +        Q+ +   G  +  ++   D   L  
Sbjct: 318 AKLIGFPVMIKASEGGGGKGIRRVDNEDDFIALYRQAVNETPGSPMFVMKVVTDARHLEV 377

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + ++ ++R A    + +G
Sbjct: 378 QLLADQYGTNITLFGRDCSIQ----RRHQKIIEEAPVTITKPETFQRMERAAIRLGELVG 433

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+ P   K ++LE+N +
Sbjct: 434 YVSAGTVEYLYSPKDDKFYFLELNPR 459


>gi|68171213|ref|ZP_00544618.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999368|gb|EAM86012.1| Carbamoyl-phosphate synthase, large subunit, glutamine-dependent
           [Ehrlichia chaffeensis str. Sapulpa]
          Length = 1076

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 92/303 (30%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+++  I         D + +    +               +P     
Sbjct: 29  SGTQACKVLKQEGYRIILINSNPATIMTDPEIADSTYIEPITSNIIEKIIIKERPSAILP 88

Query: 57  VLHGNF----GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        +     ILE   +    +   A   + D+   +Q +   GV    SI+
Sbjct: 89  TVGGQTALNAAINLCELGILEKYNVKLIGATKEAIKKAEDRNLFRQAMDKIGVKYPKSII 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       D+   I  P +I+P      +G  +    +    ++    + +   ++ +++
Sbjct: 149 IRSVDEINDALEYIGLPAIIRPSFTLGGIGGGISYNKEEFHKNVSHGLNISPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +         ++  K     
Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDVEYQKMRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P     +  +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNDNDLLVIEMN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-QSSSWNHGDQLLIEQYVD 173
               +    +  P + +P        + +I+   ++   L    + ++HG  LL +    
Sbjct: 705 HEVYECIKDLVFPILARPSYVLGGQSMSIIRDSNALSNYLTTYKNIFDHGSLLLDQFLTH 764

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            IE+    + D         +   +       +S  ++  +    +  +I   +      
Sbjct: 765 AIEVDVDAICDGEKVYIAGIMEHIEEAG---VHSGDSACSLPSYSLTSEITDAIAEQTKK 821

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              A+  RG     +       +++ LE+N +   T     P +A   G    ++   ++
Sbjct: 822 IALALQVRGFINIQYAI--QDGEIYILEVNPRASRT----VPFIAKATGIPIAKIATEVL 875


>gi|58259083|ref|XP_566954.1| aspartate carbamoyltransferase [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134107145|ref|XP_777703.1| hypothetical protein CNBA5810 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50260399|gb|EAL23056.1| hypothetical protein CNBA5810 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57223091|gb|AAW41135.1| aspartate carbamoyltransferase, putative [Cryptococcus neoformans
           var. neoformans JEC21]
          Length = 2333

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++ H KPD  + 
Sbjct: 579 SGSQAIKALKEEGIYTILVNPNIATIQTSKGLADKVYFLPVTPEFVLKIIKHEKPDGIYC 638

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G    +  ++   E  ++     G     +   + R     +   +        + +
Sbjct: 639 TFGGQTALNVGIKLKDEFSKLGVKVLGTPIETIITTEDREMFARAMEEIGEKCAESATAV 698

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++ + I  P +++       LG    K  + +    L   ++    Q+L+E+ +
Sbjct: 699 NLTEAIEAANRIGFPVIVRAAYALGGLGSGFAKDVEQLTE--LCGKAFATSPQVLVEKSM 756

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 757 KGW-KEIEYEVVRDCRNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDADYNMLRTTAV 815

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 816 NVIRHLGVVGECNIQYALNPYSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 865


>gi|315174013|gb|EFU18030.1| pyruvate carboxylase [Enterococcus faecalis TX1346]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|315161627|gb|EFU05644.1| pyruvate carboxylase [Enterococcus faecalis TX0645]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|315159034|gb|EFU03051.1| pyruvate carboxylase [Enterococcus faecalis TX0312]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|315155390|gb|EFT99406.1| pyruvate carboxylase [Enterococcus faecalis TX0043]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|315144850|gb|EFT88866.1| pyruvate carboxylase [Enterococcus faecalis TX2141]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|315025357|gb|EFT37289.1| pyruvate carboxylase [Enterococcus faecalis TX2137]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|312899886|ref|ZP_07759204.1| pyruvate carboxylase [Enterococcus faecalis TX0470]
 gi|311292882|gb|EFQ71438.1| pyruvate carboxylase [Enterococcus faecalis TX0470]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|307270784|ref|ZP_07552074.1| pyruvate carboxylase [Enterococcus faecalis TX4248]
 gi|306512898|gb|EFM81540.1| pyruvate carboxylase [Enterococcus faecalis TX4248]
 gi|315032950|gb|EFT44882.1| pyruvate carboxylase [Enterococcus faecalis TX0017]
 gi|315146733|gb|EFT90749.1| pyruvate carboxylase [Enterococcus faecalis TX4244]
 gi|315166348|gb|EFU10365.1| pyruvate carboxylase [Enterococcus faecalis TX1341]
 gi|315170245|gb|EFU14262.1| pyruvate carboxylase [Enterococcus faecalis TX1342]
 gi|329572365|gb|EGG54019.1| pyruvate carboxylase [Enterococcus faecalis TX1467]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|307271564|ref|ZP_07552836.1| pyruvate carboxylase [Enterococcus faecalis TX0855]
 gi|312905180|ref|ZP_07764301.1| pyruvate carboxylase [Enterococcus faecalis TX0635]
 gi|306511836|gb|EFM80834.1| pyruvate carboxylase [Enterococcus faecalis TX0855]
 gi|310631570|gb|EFQ14853.1| pyruvate carboxylase [Enterococcus faecalis TX0635]
 gi|315579104|gb|EFU91295.1| pyruvate carboxylase [Enterococcus faecalis TX0630]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|307277110|ref|ZP_07558214.1| pyruvate carboxylase [Enterococcus faecalis TX2134]
 gi|306506040|gb|EFM75206.1| pyruvate carboxylase [Enterococcus faecalis TX2134]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|307285761|ref|ZP_07565895.1| pyruvate carboxylase [Enterococcus faecalis TX0860]
 gi|306502522|gb|EFM71789.1| pyruvate carboxylase [Enterococcus faecalis TX0860]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|293383534|ref|ZP_06629444.1| pyruvate carboxylase [Enterococcus faecalis R712]
 gi|293387353|ref|ZP_06631909.1| pyruvate carboxylase [Enterococcus faecalis S613]
 gi|312906084|ref|ZP_07765096.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 512]
 gi|312909430|ref|ZP_07768285.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 516]
 gi|291079046|gb|EFE16410.1| pyruvate carboxylase [Enterococcus faecalis R712]
 gi|291083251|gb|EFE20214.1| pyruvate carboxylase [Enterococcus faecalis S613]
 gi|310627730|gb|EFQ11013.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 512]
 gi|311290103|gb|EFQ68659.1| pyruvate carboxylase [Enterococcus faecalis DAPTO 516]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|257421903|ref|ZP_05598893.1| pyruvate carboxylase [Enterococcus faecalis X98]
 gi|257163727|gb|EEU93687.1| pyruvate carboxylase [Enterococcus faecalis X98]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|257090645|ref|ZP_05585006.1| pyruvate carboxylase [Enterococcus faecalis CH188]
 gi|256999457|gb|EEU85977.1| pyruvate carboxylase [Enterococcus faecalis CH188]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|257087486|ref|ZP_05581847.1| pyruvate carboxylase [Enterococcus faecalis D6]
 gi|256995516|gb|EEU82818.1| pyruvate carboxylase [Enterococcus faecalis D6]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|257084518|ref|ZP_05578879.1| pyruvate carboxylase [Enterococcus faecalis Fly1]
 gi|256992548|gb|EEU79850.1| pyruvate carboxylase [Enterococcus faecalis Fly1]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|257081966|ref|ZP_05576327.1| pyruvate carboxylase [Enterococcus faecalis E1Sol]
 gi|256989996|gb|EEU77298.1| pyruvate carboxylase [Enterococcus faecalis E1Sol]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|257079687|ref|ZP_05574048.1| pyruvate carboxylase [Enterococcus faecalis JH1]
 gi|294780845|ref|ZP_06746200.1| pyruvate carboxylase [Enterococcus faecalis PC1.1]
 gi|256987717|gb|EEU75019.1| pyruvate carboxylase [Enterococcus faecalis JH1]
 gi|294452090|gb|EFG20537.1| pyruvate carboxylase [Enterococcus faecalis PC1.1]
 gi|323481445|gb|ADX80884.1| pyruvate carboxylase [Enterococcus faecalis 62]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|256963623|ref|ZP_05567794.1| pyruvate carboxylase [Enterococcus faecalis HIP11704]
 gi|256954119|gb|EEU70751.1| pyruvate carboxylase [Enterococcus faecalis HIP11704]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|256961250|ref|ZP_05565421.1| pyruvate carboxylase [Enterococcus faecalis Merz96]
 gi|256951746|gb|EEU68378.1| pyruvate carboxylase [Enterococcus faecalis Merz96]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|256956733|ref|ZP_05560904.1| pyruvate carboxylase [Enterococcus faecalis DS5]
 gi|256947229|gb|EEU63861.1| pyruvate carboxylase [Enterococcus faecalis DS5]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|302894487|ref|XP_003046124.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256727051|gb|EEU40411.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 2238

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 468 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIQYERPDAIYV 527

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 528 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAS 587

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 588 NIDEAMHVVKDIGFPVIVRAAYALGGLGSGFANNEDELLD--LCNKAFAASPQVLIERSM 645

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 646 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 704

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 705 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 754


>gi|256763148|ref|ZP_05503728.1| pyruvate carboxylase [Enterococcus faecalis T3]
 gi|256684399|gb|EEU24094.1| pyruvate carboxylase [Enterococcus faecalis T3]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|256616987|ref|ZP_05473833.1| pyruvate carboxylase [Enterococcus faecalis ATCC 4200]
 gi|256596514|gb|EEU15690.1| pyruvate carboxylase [Enterococcus faecalis ATCC 4200]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|255975144|ref|ZP_05425730.1| pyruvate carboxylase [Enterococcus faecalis T2]
 gi|257416693|ref|ZP_05593687.1| pyruvate carboxylase [Enterococcus faecalis AR01/DG]
 gi|255968016|gb|EET98638.1| pyruvate carboxylase [Enterococcus faecalis T2]
 gi|257158521|gb|EEU88481.1| pyruvate carboxylase [Enterococcus faecalis ARO1/DG]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|253681252|ref|ZP_04862050.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum D str. 1873]
 gi|253562490|gb|EES91941.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum D str. 1873]
          Length = 447

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 90/277 (32%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLV--------LAHLKPDLAFN--------------- 56
              A  + G +   +  D+D++   V        +   KP  ++                
Sbjct: 17  IIRACRELGIETVAVYSDIDKNALHVEMADEAVCIGPAKPSESYLNMENIISATVLTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 77  AIHPGFGFLSENSKFAQMCNDCNIVFIGPDIDTMNNMGNKSKAREIMLKAKVPIIPGTEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +  +     I  P +IK   GG   GI +++  + +      +            
Sbjct: 137 NVDTVKDALKEAERIGYPVMIKAAAGGGGRGIRIVRTSEELGKMFETAKREAEVAFGDGS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++  +       P   +  ++ K++ 
Sbjct: 197 MYMEKFIENPRHVEFQILGDNYGNVVHLGERDCSIQRRNQKVLEETPCPIMTEELRKKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +G    +FL D      +++E+N +
Sbjct: 257 LVAVKAAKAVNYKGAGTIEFLLD-NKGDFYFMEMNTR 292


>gi|255972077|ref|ZP_05422663.1| pyruvate carboxylase [Enterococcus faecalis T1]
 gi|300860239|ref|ZP_07106326.1| pyruvate carboxylase [Enterococcus faecalis TUSoD Ef11]
 gi|255963095|gb|EET95571.1| pyruvate carboxylase [Enterococcus faecalis T1]
 gi|300849278|gb|EFK77028.1| pyruvate carboxylase [Enterococcus faecalis TUSoD Ef11]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|229545123|ref|ZP_04433848.1| pyruvate carboxylase [Enterococcus faecalis TX1322]
 gi|229309668|gb|EEN75655.1| pyruvate carboxylase [Enterococcus faecalis TX1322]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|229549371|ref|ZP_04438096.1| pyruvate carboxylase [Enterococcus faecalis ATCC 29200]
 gi|307287664|ref|ZP_07567707.1| pyruvate carboxylase [Enterococcus faecalis TX0109]
 gi|312953537|ref|ZP_07772375.1| pyruvate carboxylase [Enterococcus faecalis TX0102]
 gi|229305608|gb|EEN71604.1| pyruvate carboxylase [Enterococcus faecalis ATCC 29200]
 gi|306501402|gb|EFM70705.1| pyruvate carboxylase [Enterococcus faecalis TX0109]
 gi|310628549|gb|EFQ11832.1| pyruvate carboxylase [Enterococcus faecalis TX0102]
 gi|315035746|gb|EFT47678.1| pyruvate carboxylase [Enterococcus faecalis TX0027]
 gi|315152027|gb|EFT96043.1| pyruvate carboxylase [Enterococcus faecalis TX0031]
 gi|315164887|gb|EFU08904.1| pyruvate carboxylase [Enterococcus faecalis TX1302]
 gi|327535741|gb|AEA94575.1| pyruvate carboxylase [Enterococcus faecalis OG1RF]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|227553989|ref|ZP_03984036.1| pyruvate carboxylase [Enterococcus faecalis HH22]
 gi|227176892|gb|EEI57864.1| pyruvate carboxylase [Enterococcus faecalis HH22]
 gi|315574311|gb|EFU86502.1| pyruvate carboxylase [Enterococcus faecalis TX0309B]
 gi|315580214|gb|EFU92405.1| pyruvate carboxylase [Enterococcus faecalis TX0309A]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|227519826|ref|ZP_03949875.1| pyruvate carboxylase [Enterococcus faecalis TX0104]
 gi|227072716|gb|EEI10679.1| pyruvate carboxylase [Enterococcus faecalis TX0104]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|110834871|ref|YP_693730.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
 gi|110647982|emb|CAL17458.1| acetyl-CoA carboxylase, biotin carboxylase [Alcanivorax borkumensis
           SK2]
          Length = 448

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A ++ G +   +    DR +  V LA            D   N           
Sbjct: 14  ALRILRACKELGIRTVAVYSKPDRDLMHVRLADEAVCIGPASSADSYLNIPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  +K+ + + +   GVP  P 
Sbjct: 74  DADAIHPGYGFLAENADFAESVERSGFTFIGPKADTIRLMGNKVAAIEAMKKAGVPTVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   D         I  P +IK   GG   G+ V+ + + +   +  + S      
Sbjct: 134 SNGPIGDDDEASLAMAEQIGYPVIIKAAAGGGGRGMRVVDEAKQLLNAITLTRSEAKNAF 193

Query: 166 LLIEQYVD-----GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                Y++        +   V+ D +     +            K         +P  + 
Sbjct: 194 GDATVYMEKFLQQPRHVEVQVLADGAGHAIHLGDRDCSLQRRHQKVVEEAPAPGIPQHLK 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ +        A + I  RG    +FL+   +   +++E+N +
Sbjct: 254 EEVAE----RCVNACKEINYRGAGTFEFLY--ENEGFYFIEMNTR 292


>gi|29376950|ref|NP_816104.1| pyruvate carboxylase [Enterococcus faecalis V583]
 gi|29344415|gb|AAO82174.1| pyruvate carboxylase [Enterococcus faecalis V583]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|322437634|ref|YP_004219724.1| protein of unknown function DUF201 [Acidobacterium sp. MP5ACTX9]
 gi|321165527|gb|ADW71230.1| protein of unknown function DUF201 [Acidobacterium sp. MP5ACTX9]
          Length = 418

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 98/338 (28%), Gaps = 58/338 (17%)

Query: 10  SEREVSLSSGKACASALEDAGFKVSQI--------------------DVD--RSVGLVLA 47
           SER +S  + +  A AL + G +V  +                    D+   +S+   L 
Sbjct: 10  SERWIS--TAR-LAMALIETGCEVYAVCRNDHPLLLISGLARRYSYRDLKPLKSMMNALR 66

Query: 48  HLKPDLA-------FNVLHGNFGEDGLVQAIL--ELLEIPYTHSGILASALSMDKMRSKQ 98
              PDL        F + H            +  ELLE  +      +  LS   + +  
Sbjct: 67  DAAPDLVICCNEETFRLAHRIHQLAVTKNDRVLKELLERSFGTPEHYSIELSRFGLMTLA 126

Query: 99  VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
                 +P    +        ++  +  P V+K        G+ + +  +       +  
Sbjct: 127 TEEQIEIPASLQVNSRFELEVAEEELGWPLVLKSDGSFGGNGVRIARDARQALTFWRRLR 186

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                 + +    ++        M                  +                 
Sbjct: 187 GPVGPLRTMNRVLMNRHLKPLYGMLRLQRHTVVAQRNIVGSEATLAASCWRGELLACHCM 246

Query: 219 IPLDIYK--------------EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
             ++ +                +   A    + +G  G    DF+ +  +   F +E+NV
Sbjct: 247 EVVESWNVRGPSSVLRVIESEPMLAAARTLIRRLGISGFCGFDFIVEATTGTPFLIEMNV 306

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVE--DASCLR 300
           +P  T  S    +A   G   ++L++ +V   +A+  R
Sbjct: 307 RP--TQTS---HLALGPG---KDLIVSLVRTVEANKNR 336


>gi|221504452|gb|EEE30125.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii VEG]
          Length = 2612

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 4/162 (2%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +    ++            I  P +IK  +GG   GI ++ + + +     Q  +   G 
Sbjct: 501 IFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRMVDRKEQVRGAYEQVVAEVPGS 560

Query: 165 Q-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              +++       +   ++GD       ++           K         +     +  
Sbjct: 561 PVFMMQLCTAARHIEVQIVGDEDGQAVALSGRDCSTQRRFQKIFEEAPPTTVVPPHTMKE 620

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++    A    Q++G  G    ++L++    K F+LE+N +
Sbjct: 621 MEKA---AQRLTQSLGYVGAGTVEYLYNRKDDKFFFLELNPR 659


>gi|221482403|gb|EEE20751.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii GT1]
          Length = 2252

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 4/162 (2%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +    ++            I  P +IK  +GG   GI ++ + + +     Q  +   G 
Sbjct: 152 IFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRMVDRKEQVRGAYEQVVAEVPGS 211

Query: 165 Q-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              +++       +   ++GD       ++           K         +     +  
Sbjct: 212 PVFMMQLCTAARHIEVQIVGDEDGQAVALSGRDCSTQRRFQKIFEEAPPTTVVPPHTMKE 271

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++    A    Q++G  G    ++L++    K F+LE+N +
Sbjct: 272 MEKA---AQRLTQSLGYVGAGTVEYLYNRKDDKFFFLELNPR 310


>gi|241172953|ref|XP_002410805.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
 gi|215495002|gb|EEC04643.1| propionyl-coenzyme A carboxylase, alpha polypeptide, putative
           [Ixodes scapularis]
          Length = 694

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 18/145 (12%), Positives = 47/145 (32%), Gaps = 2/145 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P + K ++GG   G+ ++  +      L  +              ++       
Sbjct: 171 ARRIGFPVMAKAVRGGGGKGMRIVMNEGEFDAQLESAKREAMKSFGDDNMLIEKFVANPR 230

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +                  S + ++  +      P     +  + +   A  A +A+  
Sbjct: 231 QVQVFGDHHGNYVYLFERDCSVQRRHQKVIEEAPAPGVTE-ETRRLLGEAAVKAARAVNY 289

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+ D + +K +++E+N +
Sbjct: 290 VGAGTVEFIMD-VDQKFYFMEMNTR 313


>gi|237841327|ref|XP_002369961.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii ME49]
 gi|211967625|gb|EEB02821.1| acetyl-CoA carboxylase, putative [Toxoplasma gondii ME49]
          Length = 2599

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 4/162 (2%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +    ++            I  P +IK  +GG   GI ++ + + +     Q  +   G 
Sbjct: 501 IFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRMVDRKEQVRGAYEQVVAEVPGS 560

Query: 165 Q-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              +++       +   ++GD       ++           K         +     +  
Sbjct: 561 PVFMMQLCTAARHIEVQIVGDEDGQAVALSGRDCSTQRRFQKIFEEAPPTTVVPPHTMKE 620

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++    A    Q++G  G    ++L++    K F+LE+N +
Sbjct: 621 MEKA---AQRLTQSLGYVGAGTVEYLYNRKDDKFFFLELNPR 659


>gi|152981095|ref|YP_001354662.1| biotin carboxylase [Janthinobacterium sp. Marseille]
 gi|151281172|gb|ABR89582.1| biotin carboxylase [Janthinobacterium sp. Marseille]
          Length = 453

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 50/148 (33%), Gaps = 3/148 (2%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P +IK   GG   G+ V+  + ++   +  + +         E Y++     
Sbjct: 147 QIARKIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAFGNPEVYMEKYLEN 206

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
              +    L                ++          PA  IP    + +      A + 
Sbjct: 207 PRHVEIQILADEHKNAIWLGERDCSMQRRHQKVLEEAPAPGIPRKTIERIGDRCAEACRK 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    +FL+   + + +++E+N +
Sbjct: 267 MGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|114705588|ref|ZP_01438491.1| probable pyruvate carboxylase protein [Fulvimarina pelagi HTCC2506]
 gi|114538434|gb|EAU41555.1| probable pyruvate carboxylase protein [Fulvimarina pelagi HTCC2506]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 51/151 (33%), Gaps = 9/151 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               +  P ++K   GG   G+ VI+    +   + +        +   +  L +     
Sbjct: 155 MADAVGYPLMLKASWGGGGRGMRVIRSADELERGVTEGKREAKAAFGKDEVYLEKLVEKA 214

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   ++GD    V ++            K         L  +   ++    ++LA   
Sbjct: 215 RHVEVQILGDKHGTVVDLFERDCSIQRRNQKVVERAPAPYLNHEKRRELAGYARKLADAT 274

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  G    +FL D  +++ +++E+N +
Sbjct: 275 ----NYVGAGTIEFLMDADTQEFYFIEVNPR 301


>gi|11992991|gb|AAF04493.2|AF157612_1 acetyl-CoA carboxylase 1 precursor [Toxoplasma gondii]
          Length = 2564

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 4/162 (2%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +    ++            I  P +IK  +GG   GI ++ + + +     Q  +   G 
Sbjct: 501 IFDQATVKSVEECEKVADRIGYPMMIKASEGGGGKGIRMVDRKEQVRGAYEQVVAEVPGS 560

Query: 165 Q-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              +++       +   ++GD       ++           K         +     +  
Sbjct: 561 PVFMMQLCTAARHIEVQIVGDEDGQAVALSGRDCSTQRRFQKIFEEAPPTTVVPPHTMKE 620

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++    A    Q++G  G    ++L++    K F+LE+N +
Sbjct: 621 MEKA---AQRLTQSLGYVGAGTVEYLYNRKDDKFFFLELNPR 659


>gi|325123532|gb|ADY83055.1| biotin carboxylase/biotin-containing subunit [Acinetobacter
           calcoaceticus PHEA-2]
          Length = 646

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGADAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R  ++        I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLATQAEQIGFPIMVKASAGGGGRGMRLVQQASELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCLVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +++   A  A +A    G    +FL D  S   ++LE+N +
Sbjct: 251 VLRQQMGEAAVAAAKACAYVGAGTVEFLLDA-SGAFYFLEMNTR 293


>gi|310797646|gb|EFQ32539.1| carbamoyl-phosphate synthase subunit L [Glomerella graminicola
           M1.001]
          Length = 721

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A A   DK RSK+++++ GVP  P    
Sbjct: 107 ALHPGYGFLSENSKFAERCEKEGIVFVGPPAQAMADMGDKARSKEIMTAAGVPCVPGYHG 166

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +             I  P ++K +KGG   G+ ++  +      L  + +          
Sbjct: 167 SEQGEEQLLQHAKNIKFPVLLKSVKGGGGKGMRIVMMEDEFAAQLRSARAEARASFGEGG 226

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL---DIYKE 226
           + +   +              +           +      +   +  +  P    +   +
Sbjct: 227 EVMLVEKYIVRPRHVEVQVFADKLGNCVALGERDCSIQRRHQKILEESPAPDLDDETRFD 286

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+   G    +F+ D  +   +++E+N +
Sbjct: 287 LWEKARKAALAVNYVGAGTVEFILDKDTGDFYFMEMNTR 325


>gi|291615311|ref|YP_003525468.1| acetyl-CoA carboxylase, biotin carboxylase [Sideroxydans
           lithotrophicus ES-1]
 gi|291585423|gb|ADE13081.1| acetyl-CoA carboxylase, biotin carboxylase [Sideroxydans
           lithotrophicus ES-1]
          Length = 451

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+       E     +         L  DK+ +K  +   GVPV P +       
Sbjct: 82  YGFLSENADFSERCEKSGFVFIGPRAETIRLMGDKVSAKNAMKKAGVPVVPGVDGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               M     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PAEIMRIAKFIGYPVIIKASGGGGGRGMRVVHTEAALLNAVTMTKTEAQAAFNNPMVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
                   +    L                ++          PA      +  ++     
Sbjct: 202 KFLENPRHIEIQVLADQHGNAVFLGERDCSMQRRHQKVIEEAPAPHLNTKLRDKIGERCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 EACRKIGYRGAGTFEFLY--ENDEFYFIEMNTR 292


>gi|222150979|ref|YP_002560132.1| pyruvate carboxylase [Macrococcus caseolyticus JCSC5402]
 gi|222120101|dbj|BAH17436.1| pyruvate carboxylase [Macrococcus caseolyticus JCSC5402]
          Length = 1140

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           N +H   G   E+          +I +    +    +  DK++++      G+PV P   
Sbjct: 78  NAIHPGYGFLSENQQFAVRCAQEDIIFIGPEVRHLDMFGDKIKARNTAIQAGLPVIPGTK 137

Query: 113 VNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +D          P +IK L GG   G+ +++  + +   + ++ S         E
Sbjct: 138 DAIKGLDEAVQFAHDKYPVMIKALSGGGGKGMRIVRNAEELEEAISRAQSEAMKSFGSSE 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    +      +         ++        V P+    D +   + 
Sbjct: 198 IYIEQYIDAPKHIEVQIIGDKFGNIVHLFERDCSVQRRHQKVVEVAPSVGLSDTVRMNIC 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    Q I        +FL        +++E+N +
Sbjct: 258 NAAVDLMQQISYVNAGTVEFLVQGED--FYFIEVNPR 292


>gi|171684063|ref|XP_001906973.1| hypothetical protein [Podospora anserina S mat+]
 gi|170941992|emb|CAP67644.1| unnamed protein product [Podospora anserina S mat+]
          Length = 749

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 69/219 (31%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A     DK RSK ++++ GVP  P    
Sbjct: 120 ALHPGYGFLSENPTFAQACEDAGIVFVGPPPKAMLDMGDKARSKIIMNAAGVPCVPGYHG 179

Query: 114 NR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                         I  P ++K +KGG   G+ ++ KD+     +  +            
Sbjct: 180 PEQSVEELRGHAREIGYPVLLKSVKGGGGKGMRIVLKDEEFEAQIASARQEARASFGDGG 239

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKE 226
           + +   +              +           +      +   +  +  P        +
Sbjct: 240 EVMLVEKYVVRPRHVEVQVFADRYGNCVALGERDCSVQRRHQKILEESPAPVLDDATRHD 299

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A  A+   G    +F+ D  + K +++E+N +
Sbjct: 300 LWDKARKAALAVDYVGAGTVEFILDKDTGKFYFMEMNTR 338


>gi|197117949|ref|YP_002138376.1| acetyl-CoA carboxylase biotin carboxylase [Geobacter bemidjiensis
           Bem]
 gi|197087309|gb|ACH38580.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter bemidjiensis
           Bem]
          Length = 446

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+       +   
Sbjct: 82  YGFLSENPIFAEICEKCGITFIGPTAESMRIMGDKISARQAVIKVGVPILPGTKEGVHDV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ ++    ++P     + +         E Y++ 
Sbjct: 142 NEAIRVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPEVYIER 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
              +   +    L      V         ++          P      ++ K +   A  
Sbjct: 202 YCESPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVTTPELRKAMGEAAVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+    +   +FL D  +   F++E+N +
Sbjct: 262 AAKAVNYCSVGTMEFLVD-KNNNFFFMEMNTR 292


>gi|330443609|ref|NP_012405.2| Ura2p [Saccharomyces cerevisiae S288c]
 gi|329138916|tpg|DAA08671.2| TPA: Ura2p [Saccharomyces cerevisiae S288c]
          Length = 2214

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|262402424|ref|ZP_06078985.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sp. RC586]
 gi|262351206|gb|EEZ00339.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sp. RC586]
          Length = 391

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDTDALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SHYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|302346597|ref|YP_003814895.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           melaninogenica ATCC 25845]
 gi|302150684|gb|ADK96945.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           melaninogenica ATCC 25845]
          Length = 393

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 72/267 (26%), Gaps = 18/267 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   KPDL    +     E         +   P   +          +  + + + 
Sbjct: 56  LDAIVDKHKPDLIIPEIEAIRTERLFDYEERGIQVAPSARAVNFTMNRRAIRDLAARDLG 115

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P V+KPL   S  G   +  D+ +      +    
Sbjct: 116 LRT-AKYFYAKTYDEFKAAADEIGFPCVVKPLMSSSGHGQSYVHNDEELEEAFKNAMDGA 174

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            GD   +         +   +   +             +    +          P  I  
Sbjct: 175 RGDVKEVIIEEFIEFESEFTLLTVTQKNGPTLFCPPIGHI---QKGGDYRESWQPYAISE 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM------TPVS 272
           +   + + +A    +A+   GI   +F       +V + E++ +P   GM      T  S
Sbjct: 232 ESLHQAEHIANEVTRALTGYGIWGVEFFLTKK-GEVIFSELSPRPHDTGMVTLAHTTNFS 290

Query: 273 IFPEMAAY-AGYSFRELLLWMVEDASC 298
            F        G     +    +E A C
Sbjct: 291 EFELHFRAVMGLPIPAI---HLEHAGC 314


>gi|194097648|ref|YP_002000686.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           NCCP11945]
 gi|193932938|gb|ACF28762.1| carbamoyl phosphate synthase large subunit [Neisseria gonorrhoeae
           NCCP11945]
          Length = 808

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 97/286 (33%), Gaps = 31/286 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLHGNFGED 65
           AL ++GF+   +         D D S  L    L  +              ++H      
Sbjct: 319 ALRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVHYGGQTP 378

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHL 123
             +   L    +    +   +   + D+ R ++V++  G+   P+ + +           
Sbjct: 379 LKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEALVKAEE 438

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++   +++   + ++   +    +L++ +  + IE+    +
Sbjct: 439 IGYPLVVRPSYVLGGRAMQIVHSAEALQKYMREAVQVSEDSPVLLDFFLNNAIEVDVDCV 498

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +   + P  +  +I  E++R       A+G  G
Sbjct: 499 SDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAYALGVVG 555

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +    F        VF LE+N +   T     P ++   G    ++
Sbjct: 556 LMNVQFAV--QDGVVFVLEVNPRASRT----VPFVSKATGVPLAKV 595



 Score = 36.8 bits (83), Expect = 4.1,   Method: Composition-based stats.
 Identities = 9/51 (17%), Positives = 22/51 (43%), Gaps = 4/51 (7%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           G S   F  +P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 17  GGSNVQFAVNPENGEMIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 63


>gi|190409376|gb|EDV12641.1| protein URA1 [Saccharomyces cerevisiae RM11-1a]
 gi|323354396|gb|EGA86235.1| Ura2p [Saccharomyces cerevisiae VL3]
          Length = 2214

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|151944997|gb|EDN63252.1| aspartate transcarbamylase [Saccharomyces cerevisiae YJM789]
          Length = 2214

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|134095926|ref|YP_001101001.1| acetyl CoA carboxylase, biotin carboxylase subunit [Herminiimonas
           arsenicoxydans]
 gi|133739829|emb|CAL62880.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Herminiimonas arsenicoxydans]
          Length = 456

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 73/213 (34%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEQSGFVFIGPRSESIRMMGDKVTAKQTMIKAGVPCVPGSDGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +  + +   +  P +IK   GG   G+ V+  + ++   +  + +         E Y++
Sbjct: 142 PKEIIQTARKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGSAFGNPEVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP    + +     
Sbjct: 202 KYLENPRHVEIQILADEHKNAIWLGERDCSMQRRHQKVLEEAPAPGIPRKTIERIGDRCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + +G RG    +FL+   + + +++E+N +
Sbjct: 262 EACRKMGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|126735128|ref|ZP_01750874.1| Propionyl-CoA carboxylase alpha subunit [Roseobacter sp. CCS2]
 gi|126715683|gb|EBA12548.1| Propionyl-CoA carboxylase alpha subunit [Roseobacter sp. CCS2]
          Length = 665

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/276 (13%), Positives = 81/276 (29%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ V   +     +      +G   E+      L+   + +      A     DK+ 
Sbjct: 61  IVIDK-VMDAIKQTGAEAVHPG-YGFLSENPKFADALDAAGVTFIGPPKGAIEKMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++     V   P  +      +    IS     P +IK   GG   G+ +   D    
Sbjct: 119 SKKIAQDADVSTVPGYMGLIEDAEEAVKISNQVGYPVMIKASAGGGGKGMRIAWNDDEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 179 EGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDGHGNAVYLHERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     +    QA+G       +F+ D   R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQSVALAQAVGYTSAGTVEFIVDG-DRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  A+  +
Sbjct: 293 -----LQVEHPVTELITGV---DLVEQMIRVAAGEK 320


>gi|91772880|ref|YP_565572.1| carbamoyl phosphate synthase large subunit [Methanococcoides
           burtonii DSM 6242]
 gi|91711895|gb|ABE51822.1| Carbamoyl-phosphate synthase large chain [Methanococcoides burtonii
           DSM 6242]
          Length = 1075

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 95/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G+KV  ++ +                     + +  ++   +PD    
Sbjct: 29  SGTQACRSLKEEGYKVVLVNSNPATIMTDPEMADAVYIEPLEAKIIAKIIEKERPDAIIA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +         + E   +    + + A   + D+   K  +      VP   +
Sbjct: 89  GIGGQTGLNLTSELAEMGVFEKFNVELLGTSLEAIKNTEDRELFKNKMEDIGEKVPRSVA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +        +  P +I+P       G  +    + +     +    +  +Q+LIE+
Sbjct: 149 VSTLKEAEAIIDELGLPLIIRPAYTLGGAGGGIAYTKEQLLEISERGLRRSRINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S D   +     +     +                ++ ++ ++  
Sbjct: 209 SVLGWKEFEYEVMRDSNDTCIVICNMENLDPMGVHTGESIVVTPSQTLNDIE-HQMLRTA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     F       +   +E+N  P ++  S     +   GY    +  
Sbjct: 268 AIKIIRALGIEGGCNIQF--AAKDGEYRIVEVN--PRISRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323



 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/298 (10%), Positives = 91/298 (30%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           A+ + G +   ++ +                       V  ++   KP        G   
Sbjct: 578 AIREDGIEAHIVNNNPETVSTDYDTSDKLFFEPLTLEDVMNIIEREKPYGVLVQFGGQTS 637

Query: 64  EDGLVQAILELLEIPY-----THSGILASALSMDKMRSKQVVSSCGVPVCP--SILVNRF 116
            +  +    EL            +      ++ ++ +   ++S  GV             
Sbjct: 638 VNLALPLQKELARRTDLDTIIMGTSPEDIDMAENREKFNLMMSKLGVAQPEAGYATSQED 697

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-I 175
            ++    I  P +++P        + ++ +   +   + ++   +    +LI+ +++  +
Sbjct: 698 AIEIATRIGYPVLVRPSYVLGGRAMEIVYEQNDLERYMREAVRVSPEQPVLIDDFLEAAV 757

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+    + D    +    +   +       +S  ++  + P  +  +    V+       
Sbjct: 758 EIDVDAVCDGKDVLIGAIMEHIEEAG---VHSGDSACVIPPRYLSEETLNTVRDYTRKIA 814

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            ++   G+            KV+ LE N +   T     P ++   G    ++   ++
Sbjct: 815 LSLNVIGLINIQM--AEQDGKVYVLEANPRSSRT----IPFVSKAVGLPLAKIAAQVI 866


>gi|173146|gb|AAA68280.1| carbamyl phosphate synthetase [Saccharomyces cerevisiae]
          Length = 2214

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|854566|emb|CAA60825.1| carbamyl phosphate synthetase [Saccharomyces cerevisiae]
          Length = 2040

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 286 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 345

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 346 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 405

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 406 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 463

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 464 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 522

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 523 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 572



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 884  VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 943

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 944  MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1003

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1004 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1061

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1062 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1115


>gi|1172782|sp|P07259|PYR1_YEAST RecName: Full=Protein URA1; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate synthase;
           Includes: RecName: Full=Aspartate carbamoyltransferase
 gi|1008332|emb|CAA89425.1| URA2 [Saccharomyces cerevisiae]
          Length = 2214

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 460 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFVPVTAEFVRKVILHERPDAIYV 519

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +    E   +     G     +   + R     +   +    +      
Sbjct: 520 TFGGQTALSVGIAMKDEFEALGVKVLGTPIDTIITTEDRELFSNAIDEINEKCAKSQAAN 579

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           ++D        I  P +++       LG      ++ +    L + +++   Q+L+E+ +
Sbjct: 580 SVDEALAAVKEIGFPVIVRAAYALGGLGSGFANNEKELVD--LCNVAFSSSPQVLVEKSM 637

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 638 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 696

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P+S+    +E+N +  ++  S     +   GY   
Sbjct: 697 NVIRHLGVVGECNIQYALNPVSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 746



 Score = 39.1 bits (89), Expect = 0.88,   Method: Composition-based stats.
 Identities = 29/240 (12%), Positives = 73/240 (30%), Gaps = 8/240 (3%)

Query: 54   AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                + G    +  +    E ++I  T   ++ SA +  K            P    +  
Sbjct: 1058 VVVSMGGQTSNNIAMTLHRENVKILGTSPDMIDSAENRYKFSRMLDQIGVDQPAWKELTS 1117

Query: 114  NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                      +  P +++P    S   +  +     +   L Q+   +    ++I +Y++
Sbjct: 1118 MDEAESFAEKVGYPVLVRPSYVLSGAAMNTVYSKNDLESYLNQAVEVSRDYPVVITKYIE 1177

Query: 174  GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +         + ++    V +    +      +       P  +  +    +      
Sbjct: 1178 NAKEIEMDAVARNGELVMHVVSEHVENAGVHSGDATLIVP--PQDLAPETVDRIVVATAK 1235

Query: 234  AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              +A+   G     F+      ++  +E NV+      S FP ++   G +  EL    +
Sbjct: 1236 IGKALKITGPYNIQFI--AKDNEIKVIECNVR---ASRS-FPFISKVVGVNLIELATKAI 1289


>gi|283954910|ref|ZP_06372426.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793750|gb|EFC32503.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 443

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 87/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICTKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V+++++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVEQEKELEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 203 YIQNPRHIEVQVIGDSFGNVIHMGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|34398193|gb|AAQ67186.1| CAD [Neurigona quadrifasciata]
          Length = 1292

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSTGLADKVYFLPLTPDYVEQVIRAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     I +   +    + I A   + D+     +       V    +
Sbjct: 428 TFGGQTALNCGVELERSGIFKKYNVKIMGTPIQAIIETEDRKLFSERIAEIGEKVAPSQA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R   D+  ++  P + +       LG       + +    L   ++ H +QL+I++
Sbjct: 488 VDSIRAACDAAEILGYPVMARAAFSLGGLGSGFANNKEELLE--LGHQAFGHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGIVGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|77462742|ref|YP_352246.1| propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|77387160|gb|ABA78345.1| Propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 695

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 21/186 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   +  +      S +           +++        
Sbjct: 178 NEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDRIFIEKFVTQPRH 237

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     A    +A+G 
Sbjct: 238 IEIQVLADKHGNCVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQACALAKAVGY 297

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 298 ASAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIR 343

Query: 295 DASCLR 300
            A+  +
Sbjct: 344 VAAGEK 349


>gi|29349274|ref|NP_812777.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           thetaiotaomicron VPI-5482]
 gi|29341182|gb|AAO78971.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides
           thetaiotaomicron VPI-5482]
          Length = 1073

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVTTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEINMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VESMEDAIAAARKIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELKL-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SAKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|294140051|ref|YP_003556029.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella violacea
           DSS12]
 gi|293326520|dbj|BAJ01251.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Shewanella
           violacea DSS12]
          Length = 705

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P +IK   GG   G+ +++    +  ++  +       + +   L+        
Sbjct: 153 ANKMGFPLLIKATYGGGGKGMRIVESSAEVLENIHSARREASSSFGNDKLLMERYLRQPR 212

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   ++           +             +  ++  E+   A  A 
Sbjct: 213 HVEVQVFADNYGNCIYLSDRDCSIQ----RRHQKVVEEAPAPGLSDELRAEMGEAAVAAA 268

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI  RG    +FL D      +++E+N +
Sbjct: 269 KAIDYRGAGTIEFLLDT-DNSFYFMEMNTR 297


>gi|304410410|ref|ZP_07392028.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella baltica
           OS183]
 gi|307304502|ref|ZP_07584252.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella baltica
           BA175]
 gi|304350894|gb|EFM15294.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella baltica
           OS183]
 gi|306911904|gb|EFN42328.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella baltica
           BA175]
          Length = 391

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 81/269 (30%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                   +D S +  V+   +P L    +
Sbjct: 22  GKEVAIELQRLGVEVIGVDRYPNAPAMQVAHRSHVINMLDASALRAVIELERPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  IP   +  L       +  + + +                  
Sbjct: 82  EAIATQTLVDMEAEGVNIIPTARATKLTMDREGIRRLAAETLGLPT-SPYFFCDTETEFN 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P V+KP+   S  G  VI+           +      G   +I +     + 
Sbjct: 141 QAISKIGVPCVVKPVMSSSGKGQSVIRDIALSHKAWQYAQEGGRAGGGRVIVEGFIPFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++  ++++      P                    P  +  ++  + Q +A    +A
Sbjct: 201 EITLLTISAVNGIHFCAPIGHRQE-----DGDYRESWQPQAMSDEVLAKSQAIASKVVEA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        +V++ E++ +P
Sbjct: 256 LGGYGLFGVELFV--KGNEVYFSEVSPRP 282


>gi|218526210|gb|ACK86512.1| carbamoyl-phosphate synthase [Nallachius americanus]
          Length = 724

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       +  V+   +P     
Sbjct: 127 SGSQAIKALREEGIQTILINPNIATVQTSKGLADKVYYLPLLPEYIEQVIKSERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G       + +        + I +   + D+    + +   +  V    +
Sbjct: 187 TFGGQTALNCGVQLEKANVFKKYGCRILGTPIESIIETEDRKMFAEKISEINERVAPSEA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG         + L  L + +  H  Q++I++
Sbjct: 247 VYSIEEALNAADKIGYPVMTRAAFSLGGLGSGFANNSDELRL--LAAQALAHSSQVIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNLLRST 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     + F+P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 364 AIKVIRHFGIVGECNIQYAFNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|221638604|ref|YP_002524866.1| Propionyl-CoA carboxylase subunit alpha [Rhodobacter sphaeroides
           KD131]
 gi|221159385|gb|ACM00365.1| Propionyl-CoA carboxylase alpha subunit [Rhodobacter sphaeroides
           KD131]
          Length = 667

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 21/186 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   +  +      S +           +++        
Sbjct: 150 NEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDRIFIEKFVTQPRH 209

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     A    +A+G 
Sbjct: 210 IEIQVLADKHGNCVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQACALAKAVGY 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 270 ASAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIR 315

Query: 295 DASCLR 300
            A+  +
Sbjct: 316 VAAGEK 321


>gi|167626490|ref|YP_001676990.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|241668926|ref|ZP_04756504.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25015]
 gi|254877458|ref|ZP_05250168.1| acetyl-CoA carboxylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|167596491|gb|ABZ86489.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|254843479|gb|EET21893.1| acetyl-CoA carboxylase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
          Length = 451

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 78/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +       L+   L  +                          
Sbjct: 14  ALRILRACRELGIKTVAVYSTADANLMHVKLADEAVCIGPAAPNLSYLNIQAIIAAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ + + +   GVP  P 
Sbjct: 74  SADAIHPGYGFLSENAKFAKAVEESGFIFIGPRAENIEVMGDKVEAIKYMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  ++    I  P +IK   GG   G+ +++K + +   +  + S      
Sbjct: 134 SGGPLGSDEKKNLEIAEQIGYPVIIKAAGGGGGRGMSIVRKKEDLISAISLTKSEARIAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +        +             +          PA     +  
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVFGDGQGNAVYLFERDCSTQRRHQKVIEEAPAIGLTDEER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + +  RG    +FL+   + + +++E+N +
Sbjct: 254 KRIGEQCVNACKILKYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|86450089|gb|ABC96233.1| carbamoylphosphate synthetase [Ceratomerus sp. JKM-2006]
          Length = 1298

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLDYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 427 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 487 VYSVAEALDAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S++ + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVVGECNIQYALNPESQEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|332557627|ref|ZP_08411949.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter sphaeroides
           WS8N]
 gi|332275339|gb|EGJ20654.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter sphaeroides
           WS8N]
          Length = 666

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 54/186 (29%), Gaps = 21/186 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   +  +      S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWSEAEVKEGFESSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     A    +A+G 
Sbjct: 209 IEIQVLADKHGNCVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQACALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIR 314

Query: 295 DASCLR 300
            A+  +
Sbjct: 315 VAAGEK 320


>gi|307708251|ref|ZP_07644718.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           NCTC 12261]
 gi|307615697|gb|EFN94903.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           NCTC 12261]
          Length = 455

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 79/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHNSEEALTVAEKIGYPVMLKASAGGGGKGIRKVEKPEDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD   +V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGNVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S K +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEASGKFYFMEMNTR 293


>gi|300814449|ref|ZP_07094711.1| pyruvate carboxylase [Peptoniphilus sp. oral taxon 836 str. F0141]
 gi|300511419|gb|EFK38657.1| pyruvate carboxylase [Peptoniphilus sp. oral taxon 836 str. F0141]
          Length = 1141

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 88/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 AL + G +   I                   + +    + A+L  D        
Sbjct: 16  AIRVFRALRELGIRSVAIYSKEDQLSLFRTKADESYLIGKDKSPLGAYLDIDEIIKLAKA 75

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+    A  E   I +      A     DK++SK V ++  VP  P
Sbjct: 76  KAVDAIHPGYGFLAENAEFAAKCEKEGITFIGPSSSAMEALGDKIKSKIVANNAKVPTIP 135

Query: 110 SILVNRFTMDSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
            I       +           P +IK   GG   G+ V+  ++ +   L         ++
Sbjct: 136 GIQKPIENDEQAKDFAKEAGYPVIIKASFGGGGRGMRVVNNEKELIEKLHSAKSEAKQAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +       +   ++GD   ++  +            K         LP    
Sbjct: 196 GNDAIFIEKYLEKPKHIEVQILGDKFGNIVHLFERDCSIQRRHQKVIEFTPAFSLP---- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + + + A     +IG       +FL D      +++E+N +
Sbjct: 252 KNVRESICQDALKIANSIGYINAGTVEFLVDKNLNH-YFIEVNPR 295


>gi|113477178|ref|YP_723239.1| acetyl-CoA carboxylase biotin carboxylase subunit [Trichodesmium
           erythraeum IMS101]
 gi|110168226|gb|ABG52766.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Trichodesmium erythraeum IMS101]
          Length = 451

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++    +      +             Y++       
Sbjct: 149 AEKIGFPLIIKATAGGGGRGMRLVRHPNDLSKLFQAAQGEAEAAFGNPGVYMEKFIERPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+      + +++   A  A ++I 
Sbjct: 209 HIEFQILADSYGNVIHLGERDCSIQRRHQKLLEEAPSPALDPKLRQKMGEAAVKAAKSIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S K +++E+N +
Sbjct: 269 YLGAGTVEFLLD-QSGKFYFMEMNTR 293


>gi|306835392|ref|ZP_07468412.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49726]
 gi|304568720|gb|EFM44265.1| pyruvate carboxylase [Corynebacterium accolens ATCC 49726]
          Length = 1159

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 70/234 (29%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +       + D  +   +G   E   +    E   I +         L+ DK  
Sbjct: 85  LDI-EEIIRAAKKSEADAIYPG-YGFLSERADLARACEDNGIKFIGPTPSTLDLTGDKSA 142

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P                     S P  +K + GG   G+  ++ +  +  
Sbjct: 143 AVNAAKEAGLPTLQDSQPTTDIDKLVADAGDFSFPVFVKAVSGGGGRGMRYVESESELRE 202

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  ++  V         ++       
Sbjct: 203 RAAEASREAEAAFGDGSVYLETAVINPQHIEVQVLADSQGNVIHLFERDCSVQRRHQKVV 262

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA      +   + + A    + I   G    +FL D     V ++E+N +
Sbjct: 263 EIAPAPSLDSQLRDRICQDAVNFCEHINYEGAGTVEFLVDERGNHV-FIEMNPR 315


>gi|157427568|gb|ABP02014.1| acetyl-CoA carboxylase [Jatropha curcas]
          Length = 2271

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 62/186 (33%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  +     V     +      + S  ++  P +IK   GG   G
Sbjct: 189 PTLPWSGSHVKIPPESCLIAIPDEVYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 248

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 249 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQHGNVAALHSRDCSV 308

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    +++   G +  ++L+   + + ++
Sbjct: 309 QRRHQKIIEEGPITVAPL----ETVKKLEQAARRLAKSVNYVGAATVEYLYSMETGEYYF 364

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 365 LELNPR 370


>gi|256378297|ref|YP_003101957.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
 gi|255922600|gb|ACU38111.1| D-alanine--D-alanine ligase [Actinosynnema mirum DSM 43827]
          Length = 339

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 42/190 (22%), Positives = 69/190 (36%), Gaps = 15/190 (7%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCG 180
             + PP+V+KP+   +S G+ ++         L  + + +   + L+E+Y   G E+ CG
Sbjct: 148 CPLPPPFVVKPVDADNSDGLTLVHDRADYHAALDAAFACSPRRRALVERYVPPGREVRCG 207

Query: 181 V--MGDASLDVTEIAVPKSDFYSYELKYSSLN-----------STHVLPAKIPLDIYKEV 227
           V         +     P            + +                       +   V
Sbjct: 208 VLVRSGVPTPLPLEEYPLPSGVRPRADKLADDGGGSLSLVAKADGRSWIVDHDDPVTAAV 267

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           Q  A   H+A+GCR  S  DF  DP   + ++LE  +     P S+   MA  AG    E
Sbjct: 268 QEQALRCHEALGCRDYSLFDFRIDPE-GRPWFLEAGLYCSFAPTSVITTMAGAAGIGLAE 326

Query: 288 LLLWMVEDAS 297
           L    V  A+
Sbjct: 327 LFAEAVTTAA 336


>gi|256371529|ref|YP_003109353.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256008113|gb|ACU53680.1| Carbamoyl-phosphate synthase L chain ATP- binding [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 588

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 68/232 (29%), Gaps = 8/232 (3%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
              +  ++     +      +G F E+      +    + +      A  +  DK+ S++
Sbjct: 63  TTKLLEIIERSGAEAVHPG-YGFFSENADFARAITQAGVTFVGPPPDAIEVMGDKISSRR 121

Query: 99  VVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
              + GV   P +       +           P  IK   GG   G+ V+ +       L
Sbjct: 122 AAEAAGVAGVPGLTHPVDDPEEVVAFGDEHGWPVAIKAAYGGGGRGMRVVTRPDEAAEAL 181

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             +           E Y++        +    +     +V          +         
Sbjct: 182 ASARREARSAFGRDECYLERYLAWPRHIEMQVIADDHGSVLWLSERDCSAQRRHQKLIEE 241

Query: 215 LP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            P    P +  + +   A    +A G R     +FL+       ++LE+N +
Sbjct: 242 TPAPHFPDETRRAMGEAACAVARACGYRNAGTVEFLY--QDGAFYFLEMNTR 291


>gi|153008453|ref|YP_001369668.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
 gi|151560341|gb|ABS13839.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1169

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  ++ ++       +   +  L +      
Sbjct: 173 AAEIGYPLMLKASWGGGGRGMRAIRAEADLAREVTEAKREAKAAFGKDEVYLEKLIERAR 232

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +   +            K         L      ++     ++A    
Sbjct: 233 HVEVQILGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLDDAQRQELAGYGLKIAHAT- 291

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G    +FL D  S K +++E+N +
Sbjct: 292 ---DYIGAGTVEFLMDADSGKFYFIEVNPR 318


>gi|158428180|pdb|2DZD|A Chain A, Crystal Structure Of The Biotin Carboxylase Domain Of
           Pyruvate Carboxylase
 gi|158428181|pdb|2DZD|B Chain B, Crystal Structure Of The Biotin Carboxylase Domain Of
           Pyruvate Carboxylase
 gi|116174143|emb|CAL59718.1| pyruvate carboxylase [Geobacillus thermodenitrificans]
          Length = 461

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 31/286 (10%), Positives = 83/286 (29%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL---------------------------VLAHLKP 51
                 A  + G +   I     VG                            ++   K 
Sbjct: 18  AIRVFRACTELGIRTVAIYSKEDVGSYHRYKADEAYLVGEGKKPIEAYLDIEGIIEIAKA 77

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + +H   G   E+           I +         +  DK++++    + G+PV 
Sbjct: 78  HDV-DAIHPGYGFLSENIQFAKRCREEGIIFIGPNENHLDMFGDKVKARHAAVNAGIPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P     +      +        P +IK   GG   G+ +++    +     ++ S     
Sbjct: 137 PGSDGPVDGLEDVVAFAEAHGYPIIIKAALGGGGRGMRIVRSKSEVKEAFERAKSEAKAA 196

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +   +  + +   +   +   ++GD   ++  +            +             +
Sbjct: 197 FGSDEVYVEKLIENPKHIEVQILGDYEGNIVHLYERDCSVQ----RRHQKVVEVAPSVSL 252

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ + +   A    +++G       +FL      + +++E+N +
Sbjct: 253 SDELRQRICEAAVQLMRSVGYVNAGTVEFLV--SGDEFYFIEVNPR 296


>gi|20089560|ref|NP_615635.1| pyruvate carboxylase subunit A [Methanosarcina acetivorans C2A]
 gi|19914474|gb|AAM04115.1| pyruvate carboxylase subunit A [Methanosarcina acetivorans C2A]
          Length = 493

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG  +G+ V+   + +   L  +             +++       
Sbjct: 148 AEKIGYPVLIKASAGGGGIGMKVVHSIEELSTSLSSTQQMAGSAFGDSSVFIEKYVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   +  ++ K++   A    +AIG
Sbjct: 208 HIEIQILADASGNTVYLSDRECSIQRRHQKLIEEAPSPIMTPELRKQMGEAAVKVAKAIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL+       ++LE+N +
Sbjct: 268 YINAGTVEFLY--SKGNFYFLEVNTR 291


>gi|70726390|ref|YP_253304.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           haemolyticus JCSC1435]
 gi|68447114|dbj|BAE04698.1| acetyl-CoA carboxylase [Staphylococcus haemolyticus JCSC1435]
          Length = 451

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  + +  VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDIAKAEMIAANVPVVPGSDGLVTTI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 SDAKQIAKEIGYPVIIKATAGGGGKGIRVARTEKELENGYRMTQQEAETAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +      V         ++          P+ I  D  +E     A  
Sbjct: 201 FIENFRHIEIQIIGDQHGNVIHLGERDCTIQRRMQKLVEESPSPILSDEQREEMGNAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    + +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLNDNQFYFMEMNTR 292


>gi|322824043|gb|EFZ29584.1| acetyl-CoA carboxylase, putative [Trypanosoma cruzi]
          Length = 2199

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/162 (16%), Positives = 56/162 (34%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V     I       +    I  P +IK  +GG   GI    + + +    +  S    G 
Sbjct: 190 VYEMAYITSVEECEEVCARIGFPVMIKASEGGGGKGIRRCLRMEDVSDMFVAVSEEVKGC 249

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + + + ++    L   ++ D   D   +            +             +   I
Sbjct: 250 HIFVMRMLENVRHLEVQLLADDYGDCIAVHTRDCSVQ----RRHQKLIEEGPVFGVDPSI 305

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++  A    +A+G RG+   ++++D  +   F+LE+N +
Sbjct: 306 IASMEAAAIRLAKAVGYRGLGTVEYMYDKATDNFFFLELNPR 347


>gi|307290490|ref|ZP_07570403.1| pyruvate carboxylase [Enterococcus faecalis TX0411]
 gi|306498437|gb|EFM67941.1| pyruvate carboxylase [Enterococcus faecalis TX0411]
 gi|315030165|gb|EFT42097.1| pyruvate carboxylase [Enterococcus faecalis TX4000]
          Length = 1152

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +               P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGIASIPGSDGPVATVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|256853816|ref|ZP_05559181.1| pyruvate carboxylase [Enterococcus faecalis T8]
 gi|256710759|gb|EEU25802.1| pyruvate carboxylase [Enterococcus faecalis T8]
          Length = 1142

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 67/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 61  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +               P +IK   GG   G+ V    +   
Sbjct: 119 AKEAAVAAGIASIPGSDGPVATVEEVAAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 179 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 239 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 291


>gi|229174615|ref|ZP_04302143.1| Pyruvate carboxylase [Bacillus cereus MM3]
 gi|228608817|gb|EEK66111.1| Pyruvate carboxylase [Bacillus cereus MM3]
          Length = 1148

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSVEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRS 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|262203897|ref|YP_003275105.1| phosphoribosylglycinamide formyltransferase 2 [Gordonia bronchialis
           DSM 43247]
 gi|262087244|gb|ACY23212.1| phosphoribosylglycinamide formyltransferase 2 [Gordonia bronchialis
           DSM 43247]
          Length = 604

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 29/275 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    A +  G +V  +D                +D     +V  V+   +P      +
Sbjct: 77  GKEVVIAFQRLGVEVIAVDRYDNAPGQQVAHHAEVIDMTDPDAVLAVIDKYQPAYVVPEI 136

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +  A   L E+  T S ++A+       R                       
Sbjct: 137 EAIATEALVSAAERGLTEVIPTASAVMATMNREGIRRLADEELGLPTSPYLFADSLAELR 196

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K    +        S      +++++E +V+   
Sbjct: 197 VAAEQIGYPCVVKPVMSSSGKGQSVVKSPDDLESAWQTAASGGRVRSERVIVEGFVEFDY 256

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T              + +        P ++  D       +A     
Sbjct: 257 EITLLTVRCVDPRTGRMTTVFCAPIGHQQVNGDYVESWQPHEMSSDAMAAATSIAARIAT 316

Query: 237 -----AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 +G RG+   +         V++ E++ +P
Sbjct: 317 GLGDGKLGGRGVFGVELFV--KGDDVYFSEVSPRP 349


>gi|87200095|ref|YP_497352.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87135776|gb|ABD26518.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Novosphingobium aromaticivorans DSM 12444]
          Length = 448

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V      +   + Q+ S           Y++       
Sbjct: 149 ADAIGYPVIIKAASGGGGRGMKVCNSADQLETLMQQAGSEAKAAFGDATVYIEKYLGNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P   I  D    +  +   A   +G
Sbjct: 209 HIEFQIFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVISADERARMGGIVAKAMADMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTIEFLW--ENGEFYFIEMNTR 292


>gi|15891359|ref|NP_357031.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           tumefaciens str. C58]
 gi|15159746|gb|AAK89816.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           tumefaciens str. C58]
          Length = 667

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 83/276 (30%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      LE   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILEAIQKTGADAVHPG-YGFLSENAAFAQALEKAGVVFIGPPVGAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   +    
Sbjct: 119 SKKLAAKAGVSTVPGHMGLIEDADEAVKIASQIGYPVMIKASAGGGGKGMRIAFNEAEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      +         ++  +   
Sbjct: 179 EGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDKHGTILYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  +      A    +A+G       +F+ D      ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRHAMGEQAVALARAVGYHSAGTVEFIVDGERN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELVTGI---DLVEQMIRVASGEK 320


>gi|221202425|ref|ZP_03575457.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2M]
 gi|221208115|ref|ZP_03581120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2]
 gi|221172018|gb|EEE04460.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2]
 gi|221177702|gb|EEE10117.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD2M]
          Length = 455

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L                ++          P   IP  +   +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIDRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 257 GDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|47212098|emb|CAF93918.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2178

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  VL + +PD    
Sbjct: 206 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPITPDYVAQVLKNERPDGILL 265

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   Q +LE  ++    + + +  ++ D+     K    +  V    +
Sbjct: 266 TFGGQTALNCGVELTKQGVLEKYKVKVLGTPVASIEMTEDRKIFVEKMEEINEHVAPSEA 325

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            L     + +   +  P +++       LG       + +   +  + +     Q+L+++
Sbjct: 326 ALSVEQAVAAAERLGYPVLVRSAFALGGLGSGFANNREELVSLVTSAFAHT--SQVLVDK 383

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 + Y  ++  
Sbjct: 384 SLKGWKEIEYEVVRDAYDNCVTVCNMENIDPLGIHTGESIVVAPSQTLNDHE-YNMLRST 442

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 443 AIKVIRHLGIVGECNIQYALNPESHQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 498

Query: 291 WM 292
            +
Sbjct: 499 KL 500


>gi|313683493|ref|YP_004061231.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Sulfuricurvum kujiense DSM 16994]
 gi|313156353|gb|ADR35031.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Sulfuricurvum kujiense DSM 16994]
          Length = 446

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 46/250 (18%), Positives = 86/250 (34%), Gaps = 14/250 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I     I +         +  DK ++K V+ + GVPV P  
Sbjct: 78  DAVFPG-YGFLSENQHFVEICTHHGIKFIGPTPEVMVMMSDKSKAKDVMIAAGVPVVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I            +  P ++K   GG   G+ V++ +  I    L + +   G    
Sbjct: 137 DGAIKDIAEAKVRAKEVGYPVILKAAAGGGGRGMRVVEDESYIENAFLAAEAEAIGAFGD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    +  +   V         ++          PA     +I  E
Sbjct: 197 GTIYMEKFIKNPRHIEVQVIADSHGNVLHIGERDCSMQRRHQKLIEESPAVALTPEIRAE 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  A + I   G    ++L D   +K +++E+N +  +       EM   +G    
Sbjct: 257 LHASAVRATKYIKYEGAGTFEYLLDA-DKKFYFMEMNTR--LQVEHCVSEM--VSGL--- 308

Query: 287 ELLLWMVEDA 296
           +L+  M+  A
Sbjct: 309 DLIEMMIRVA 318


>gi|301115336|ref|XP_002905397.1| methylcrotonoyl-CoA carboxylase subunit alpha, putative
           [Phytophthora infestans T30-4]
 gi|262110186|gb|EEY68238.1| methylcrotonoyl-CoA carboxylase subunit alpha, putative
           [Phytophthora infestans T30-4]
          Length = 682

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++ +++     L                 ++       
Sbjct: 173 AEKIGYPVLIKAVLGGGGKGMRIVDEEKDFQDALDACVREGQASFGDGRVLIEKYLRKPR 232

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++          PA    + + K++   A  A +A+G
Sbjct: 233 HVELQIFGDKHGNVIHLFERDCSVQRRHQKVLEEAPAPNMSEALRKKMGDAAVAAAKAVG 292

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 293 YVGAGTVEFLLDE-DESFYFMEMNTR 317


>gi|255545642|ref|XP_002513881.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis]
 gi|223546967|gb|EEF48464.1| Homomeric Acetyl-CoA Carboxylase (Hom-ACCase) [Ricinus communis]
          Length = 2259

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 25/186 (13%), Positives = 57/186 (30%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  +     +     +      + S  ++  P +IK   GG   G
Sbjct: 178 PTLPWSGSHVKIPPESCLITIPDEMYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 237

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 238 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 297

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    + +   G +  ++L+   + + ++
Sbjct: 298 QRRHQKIIEEGPVTVAPLVTVKKLEQ----AARRLAKCVNYVGAATVEYLYSMDTGEYYF 353

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 354 LELNPR 359


>gi|169831178|ref|YP_001717160.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169638022|gb|ACA59528.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 446

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V      +   L  + S         + Y++       
Sbjct: 147 AEEIGYPVLIKASAGGGGRGMRVAHNKSDLSRALQAAQSEAQNAFGSGDVYLEKYIEEPR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           +         ++  +       P+     ++ +++   A  A Q++G
Sbjct: 207 HIEIQVFGDRHGNILSLGERDCSIQRRNQKLLEEAPSTALTPELRRQMGDAAVRAAQSVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    + +++E+N +
Sbjct: 267 YYNSGTVEFLLDRE-NRFYFIEMNTR 291


>gi|86450115|gb|ABC96246.1| carbamoylphosphate synthetase [Gloma fuscipennis]
          Length = 1275

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFSDRVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 488 VYSVAEALAAAENLGYPVMARAAFSLGGLGSGFANNQEELKN--LAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPKSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|66820060|ref|XP_643676.1| propionyl-CoA carboxylase [Dictyostelium discoideum AX4]
 gi|60471788|gb|EAL69743.1| propionyl-CoA carboxylase [Dictyostelium discoideum AX4]
          Length = 714

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 49/310 (15%), Positives = 99/310 (31%), Gaps = 46/310 (14%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLV---------------LAHLKPDLAFNVL------ 58
                +  G K   I  DVD++   V                ++L  D     +      
Sbjct: 47  VMETCKKMGIKTVAIHSDVDKNAKHVNMADEAICVGPAPTSESYLNIDAIVEAIKMTGAQ 106

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                +G   E+      LE + + +   G  A     DK+ SK++    GV V P  + 
Sbjct: 107 AVHPGYGFLSENSRFVKELENIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGYIG 166

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               MD      + I  P ++K   GG   G+ V + D+ + +    S            
Sbjct: 167 EVDGMDHVIKIANEIGYPVMVKASAGGGGKGMRVCRNDEDVKIGFRLSKQEAKSSFGDDR 226

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             ++        +    L   E A+   +      + +           +  +   ++ +
Sbjct: 227 MLIEKYIEHGRHIEIQVLSDGENALYFPERDCSIQRRNQKVIEEAPSPFMDEETRTKMGK 286

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---AGYSFR 286
            A    +A+G +     +FL D   +  ++LE+N +              +      + +
Sbjct: 287 EAAALCKAVGYKSAGTVEFLVD-HDKSFYFLEMNTR----------LQVEHPITEEITKQ 335

Query: 287 ELLLWMVEDA 296
           +L+  M+  A
Sbjct: 336 DLVEHMIRIA 345


>gi|218931753|gb|ACL12515.1| CAD [Apiochaeta excepta]
          Length = 1274

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 366 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKCYFLPLTPNYVEQVIKAERPNGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      ++     V    +
Sbjct: 426 TFGGQTALNCGVELERAGIFAKYNVKILGTPIESIIETEDRKIFADRINEIGECVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P + +       LG      ++ +    L + +  H  QL+I++
Sbjct: 486 VYSVPEALAAANRLGYPVMARAAFSLGGLGSGFANNEKEL--ATLANQALAHSSQLIIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNREYNMLRTT 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 603 ALKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|254362943|ref|ZP_04979009.1| biotin carboxylase [Mannheimia haemolytica PHL213]
 gi|153094591|gb|EDN75405.1| biotin carboxylase [Mannheimia haemolytica PHL213]
          Length = 447

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +       L    L  +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVKLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENANFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +   +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPKKNKEIAKRIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L  T             ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAQGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 QFIGERCANACREIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|149920385|ref|ZP_01908855.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
 gi|149818827|gb|EDM78269.1| D-alanine--D-alanine ligase [Plesiocystis pacifica SIR-1]
          Length = 285

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           G +  D +  P   +V  LE+   P +   S+   +A   G S+ EL   
Sbjct: 218 GPTCVDLILSPRDNEV-ILEVEPLPPVHRDSLVARVARAEGLSYPELFAR 266


>gi|73669860|ref|YP_305875.1| carbamoyl phosphate synthase large subunit [Methanosarcina barkeri
           str. Fusaro]
 gi|121697017|sp|Q469Z7|CARB_METBF RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|72397022|gb|AAZ71295.1| carbamoyl-phosphate synthase large subunit [Methanosarcina barkeri
           str. Fusaro]
          Length = 1071

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 38/298 (12%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGL------------VLAHLKPDLAFNVLHGNFG 63
           AL + G +   I         D D S  L            V+   KPD       G   
Sbjct: 575 ALREEGIETHIINNNPETVSTDFDTSDKLFFEPLTLEYVMNVIEREKPDGVLVQFGGQTS 634

Query: 64  EDGLVQAILELLEIPYTH-------SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            +  +    EL      +          +  A   +K            P       ++ 
Sbjct: 635 VNLAIPLKQELKRRTDLNTVILGTDPDDMDLAEDREKFYILMKELGVPQPEGGYATSHKE 694

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI- 175
            ++    I  P +++P        + ++  +  +   + ++   +H   +LI+ +++   
Sbjct: 695 AIEVAKRIGFPVLVRPSYVLGGRAMEIVYDEIDLERYMKEAVRVSHEHPILIDDFLEAAS 754

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           E+    + D    +    +   +       +S  ++  + P  +  ++  +V+       
Sbjct: 755 EIDVDAVCDQKDVIIGAIMEHIEEAG---VHSGDSACVIPPQSLSPEVLDQVRDYTRKIA 811

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            A+  +G+            KV+ LE N +   T     P ++   G    ++   ++
Sbjct: 812 LALKVKGLINIQM--AEKCGKVYVLEANPRSSRT----IPFVSKSVGIPLAKIAAKVI 863



 Score = 40.6 bits (93), Expect = 0.24,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 98/302 (32%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     +L++ G KV  ++ +                     + V  ++   +PD    
Sbjct: 29  SGSQACRSLKEEGIKVVLVNSNPATIMTDPEMADSVYIEPLDAKIVEKIIEKERPDGIIA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
            + G  G +       + + E   +    + + A   + D+   K+ +      VP+  +
Sbjct: 89  GIGGQTGLNITSELAEKGVFEKYGVEILGTPVEAIKNTEDRELFKETMLRIGEKVPLSRA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   D    +  P +++P       G  + +  + +     +    +  +Q+LIE+
Sbjct: 149 VNSLKEAEDVVDELGLPLIVRPAYTLGGAGGGIARTKEELLEITERGLRRSRINQVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G             + T I +   +       ++  ++       +    ++ ++  
Sbjct: 209 SVLGW-AEIEYEVMRDENDTCIVICNMENIDPMGVHTGESAVVAPSQTLSDAEHQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +A+   G     +           +E+N  P ++  S     +   GY    +  
Sbjct: 268 SIKIIRALKIEGGCNIQYAL--KEGDYRVVEVN--PRVSRSS--ALASKATGYPIARVTA 321

Query: 291 WM 292
            +
Sbjct: 322 KI 323


>gi|254253298|ref|ZP_04946616.1| Biotin carboxylase [Burkholderia dolosa AUO158]
 gi|124895907|gb|EAY69787.1| Biotin carboxylase [Burkholderia dolosa AUO158]
          Length = 455

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L                ++          P   IP  +   +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIDRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 257 GDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|124268391|ref|YP_001022395.1| putative biotin carboxylase protein [Methylibium petroleiphilum
           PM1]
 gi|124261166|gb|ABM96160.1| putative biotin carboxylase protein [Methylibium petroleiphilum
           PM1]
          Length = 449

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G +   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVRAVIVYSEADRDAKYVKLADEAVCIGPPASAQSYLNMPAIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      ++     +      +  +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVQQSGFTFIGPTPESIRVMGDKVAAKQAMIKSGVPTVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 AEGALPDDPKEIIRQARAIGYPVIIKAAGGGGGRGMRVVHTEAALIHAVQTTRAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L  T             ++          P   IP  + 
Sbjct: 194 GNPTVYMEKFLENPRHIEIQVLADTHRNAVWLGERDCSMQRRHQKIIEEAPAPGIPRRVI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 ERIGERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|229031577|ref|ZP_04187577.1| Pyruvate carboxylase [Bacillus cereus AH1271]
 gi|228729866|gb|EEL80846.1| Pyruvate carboxylase [Bacillus cereus AH1271]
          Length = 1148

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSIEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|224004864|ref|XP_002296083.1| acetyl-coa carboxylase [Thalassiosira pseudonana CCMP1335]
 gi|209586115|gb|ACI64800.1| acetyl-coa carboxylase [Thalassiosira pseudonana CCMP1335]
          Length = 2088

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 26/173 (15%), Positives = 64/173 (36%), Gaps = 18/173 (10%)

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTCGVMGDAS 186
            +IK  +GG   GI  +  +  +    +Q S+   G  +  ++   +   +   ++GD  
Sbjct: 289 IMIKASEGGGGKGIRFVDNEADLRNAYVQVSNEVIGSPIFLMQLCKNARHIEVQIVGDQH 348

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            +          P  +P + + E++  A    Q IG +G    
Sbjct: 349 GNAVALNGRDCSTQ----RRFQKIFEEGPPVIVPPETFHEMELAAQRLTQNIGYQGAGTV 404

Query: 247 DFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---AGYSFRELLLWMVEDA 296
           ++L++  + + ++LE+N +              +    G ++  L    ++ A
Sbjct: 405 EYLYNAATNEYYFLELNPR----------LQVEHPVTEGITYANLPATQLQVA 447


>gi|167586070|ref|ZP_02378458.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ubonensis Bu]
          Length = 455

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           + Y++        +    L                ++          PA  IP  +   +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNALWLGERDCSMQRRHQKVIEEAPAPGIPRRLIDRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 257 GDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|149203602|ref|ZP_01880571.1| acetyl-CoA carboxylase [Roseovarius sp. TM1035]
 gi|149142719|gb|EDM30761.1| acetyl-CoA carboxylase [Roseovarius sp. TM1035]
          Length = 449

 Score = 50.3 bits (118), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRIMGDKITAKDTMKALGVPCVPGSEG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               +     +      P ++K   GG   G+ V +    +    L + S     + + +
Sbjct: 137 GVANLKQAQALCAEIGFPVIVKATAGGGGRGMKVAQSAAELEKAFLTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGGAVHLGERDCSLQ----RRHQKVLEEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I  RG    +FL+     + F++E+N +
Sbjct: 253 ARIGKICADACANIQYRGAGTIEFLY--EKGEFFFIEMNTR 291


>gi|258620235|ref|ZP_05715274.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM573]
 gi|258587593|gb|EEW12303.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM573]
          Length = 391

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SHYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAIDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|261819608|ref|YP_003257714.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           wasabiae WPP163]
 gi|261603621|gb|ACX86107.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium wasabiae
           WPP163]
          Length = 447

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GSVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITDELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|300771045|ref|ZP_07080922.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|300762318|gb|EFK59137.1| carbamoyl-phosphate synthase, large subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 938

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/288 (11%), Positives = 87/288 (30%), Gaps = 29/288 (10%)

Query: 25  ALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNVLHGNFG 63
           A ++AG++   ++ +                       V  ++   KP+     L G   
Sbjct: 585 AAKEAGYEAIMVNCNPETVSTDFNMADKLYFEPVFWEHVREIIELEKPEGVIVQLGGQTA 644

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A    +            P           +   + 
Sbjct: 645 LKMAEKLEAIGVRIIGTSFQDMDLAEDRGRFSDLLKSLDIPYPKYGVAESAEEAIVVANQ 704

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P +++P       G+ ++  D+ +   ++       G+++LI+ ++D          
Sbjct: 705 VGYPVLVRPSYVLGGQGMSIVINDEDLEKAVVNLLKNLPGNRVLIDHFLD-RAEEAESDS 763

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
               +   I             +S  +S  + P  +  ++  +++  +    +A+  +G+
Sbjct: 764 ICDGEDVHIIGMMEHIEP-AGIHSGDSSAVLPPFSLSQNVQDKMEEYSKKLAKALNVKGL 822

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               F        VF +E N +   T     P +A      +  +   
Sbjct: 823 LNIQFAV--KDENVFVIEANPRASRT----VPFIAKAYDVPYINIATK 864



 Score = 42.6 bits (98), Expect = 0.071,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 80/262 (30%), Gaps = 27/262 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  VL     D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVVADNVYLLPLTCESIEEVLQKHNIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  +    + I E  +I      + A   + ++   +Q++   GV V  S  
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYDIKVIGVDVAAIEKTENREAFRQLMVDIGVGVAKSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P    +  G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLAGTGGGFVHKKEEFDAALNRGLHASPTHEVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +                 + 
Sbjct: 209 AVLGWKEFELELLRDANDNVIIICTIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDP 252
             +        G     F  +P
Sbjct: 269 IKMMRSIGNFAGGCNVQFSVNP 290


>gi|218885521|ref|YP_002434842.1| pyruvate carboxylase [Desulfovibrio vulgaris str. 'Miyazaki F']
 gi|218756475|gb|ACL07374.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio vulgaris str. 'Miyazaki F']
          Length = 1234

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/254 (14%), Positives = 89/254 (35%), Gaps = 10/254 (3%)

Query: 19  GKACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + A  L   G      +D+D    + LA  +  +A +   G   ED    A  +   +
Sbjct: 55  AASAAQELLLLGSDPRAYLDIDH--IIALAKQRGIVAIHPGWGFASEDERFPAKCKAAGL 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLK 134
            +  S   A  L  +K++ +++     +PV P     +           I  P ++K   
Sbjct: 113 TFIGSTAEAMNLLGNKVQVRKLAKKLDIPVVPGSEGAVDIPTARTIIDEIGLPVMLKAEG 172

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   GI  I + + +    +++S+           YV+    +   +    +      V
Sbjct: 173 GGGGRGIFAIHRAEELSDAFMKASTMAQASFGNPRLYVEKYLPSVRHIEIQVIADMYGNV 232

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D     ++ +      + P+       ++ + ++  + +  + +G   +   +FL  
Sbjct: 233 FAFDERDCTVQRNHQKLIEITPSPWSGITPELRERLKEYSRMLVREVGYHSLCTVEFLVT 292

Query: 252 PLSRKVFWLEINVQ 265
                 + +E+N +
Sbjct: 293 A-DGTPYLIEVNTR 305


>gi|70726839|ref|YP_253753.1| pyruvate carboxylase [Staphylococcus haemolyticus JCSC1435]
 gi|68447563|dbj|BAE05147.1| pyruvate carboxylase [Staphylococcus haemolyticus JCSC1435]
          Length = 1149

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+       +   I +    I    +  DK++++  
Sbjct: 67  ERIIDVAKRAGVDAIHPG-YGFLSENKQFAQRCDEEGIKFIGPHIEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +  +PV P         +           P +IK   GG   G+ +++++  +     
Sbjct: 126 AINAKLPVIPGTDGPIENFEAAKAFAQEAGFPLMIKATSGGGGKGMRIVREEGELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQIIGDEYGNIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     ++ + +   A      I        +FL      + F++E+N +
Sbjct: 246 PSVGLSKELRERICDAALQLMNNIRYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|254495507|ref|ZP_05108431.1| carbamoyl-phosphate synthase, large subunit [Polaribacter sp.
           MED152]
 gi|85819863|gb|EAQ41020.1| carbamoyl-phosphate synthase, large subunit [Polaribacter sp.
           MED152]
          Length = 951

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/254 (12%), Positives = 80/254 (31%), Gaps = 10/254 (3%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLTKYGIKIIGTSFEALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +  S    ++   P           +     +  P +++P       G+ ++  
Sbjct: 680 IAEDRGRFSSMLKENNIPYPQFGIAETADEALTLADELDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +   ++        ++LL++ Y+DG  +          D     +   +       +
Sbjct: 740 KEELVEHVVDLLGKMPNNKLLLDHYLDG-AIEAEADAICDADGNVYIIGIMEHIEPCGIH 798

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  +    +   + ++++       +A+   G+    F        V+ +E N + 
Sbjct: 799 SGDSNATLPAFNLGEFVMQQIKDHTHTIARALKTVGLINIQFAI--KDDTVYIIEANPRA 856

Query: 267 GMTPVSIFPEMAAY 280
             T     P +A  
Sbjct: 857 SRT----VPFIAKA 866



 Score = 40.2 bits (92), Expect = 0.37,   Method: Composition-based stats.
 Identities = 29/264 (10%), Positives = 71/264 (26%), Gaps = 28/264 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGSQSLRSLREDGIETILINSNPATIMTDPSMADHVYLLPLTTKSIIQILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A          +      I A  ++ D+ + ++++ + GV +    
Sbjct: 89  PTMGGQTALNLCIEADDKGIWSDFNVKMIGVDINAINVTEDREQFRELMGNIGVAMAPQE 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++   +     L +    +   +++I+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRSSYTLGGAGASIVYNPEDFDELLSRGLEASPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             K    
Sbjct: 209 KAMMGWKEYELELLRDKNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDKTYQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPL 253
              +        G     F   P 
Sbjct: 269 AIHMMRSIGDFEGGCNVQFAVSPD 292


>gi|291482595|dbj|BAI83670.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. natto BEST195]
          Length = 384

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 10/237 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + V  +D    +  ++   KPDL    +     ++ L         IP   +  L     
Sbjct: 49  YVVDMLDP-EQIRTIIEKEKPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDRE 107

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             +  + + +                 + +   I  P V+KPL   S  G  + + +  +
Sbjct: 108 GIRRLAAETLGLAT-AGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSICRSEADL 166

Query: 151 PLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +          +I +     E    ++   +++ T    P         +    
Sbjct: 167 ESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHV-----QKDGD 221

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P  +     +E + +A      +G  G+   +        +V++ E++ +P
Sbjct: 222 YIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFL--AKDRVYFSEVSPRP 276


>gi|218526194|gb|ACK86504.1| carbamoyl-phosphate synthase [Megalithone tillyardi]
          Length = 721

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P   F 
Sbjct: 130 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVFL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + +S     V    +
Sbjct: 190 TFGGQTALNCGVELEKAGVFAKYGCNILGTPIQSIIETEDRKIFAEKISEIGEKVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 250 VYSVEEALDAAEKIGYPVMARAAFSHGGLGSGFAHNKEQLKS--LATQALAHSNQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AINVIRHFRVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WM 292
            +
Sbjct: 423 KL 424


>gi|144899547|emb|CAM76411.1| Propionyl-CoA carboxylase alpha subunit [Magnetospirillum
           gryphiswaldense MSR-1]
          Length = 662

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 78/252 (30%), Gaps = 22/252 (8%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E    Q  L    I +      A     DK+ SK++    GV   P  +      
Sbjct: 82  YGFLSEKREFQEALAKAGITFIGPDSHAIFCMGDKIESKKLARQAGVNTVPGHMDVIRDA 141

Query: 119 DSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           D        I  P +IK   GG   G+ +   +       + +++           +++ 
Sbjct: 142 DHAVDIAGQIGYPVMIKASAGGGGKGMRLAWNEAEAREGFVSATNEAKSSFADDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +    L  +             ++          P+     ++ K +   A  
Sbjct: 202 FIEQPRHIEIQVLADSFGNTIYLGERECSIQRRHQKVIEEAPSPFLSPEMRKAMGEQACA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFREL 288
             +++  +     +F+    + + ++LE+N       P         EM    G    +L
Sbjct: 262 LAKSVQYKSAGTVEFIVGGATGEFYFLEMNTRLQVEHP-------VTEM--VTGL---DL 309

Query: 289 LLWMVEDASCLR 300
           +  M++ A+  +
Sbjct: 310 VELMIKVAAGEK 321


>gi|291400263|ref|XP_002716391.1| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Oryctolagus cuniculus]
          Length = 733

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +++  +     L  +              ++    T 
Sbjct: 194 HAARIGYPVMIKAVRGGGGKGMRIVQSAEEFQEQLESARREAKKSFNDDAVLIEKFVDTP 253

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  ++ K++   A  A +A+
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPAPGIKPEVRKKLGEAAVRAAKAV 313

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F+ D      +++E+N +
Sbjct: 314 NYVGAGTVEFIMDSKQN-FYFMEMNTR 339


>gi|261492753|ref|ZP_05989301.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. BOVINE]
 gi|261495633|ref|ZP_05992079.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261308740|gb|EEY09997.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. OVINE]
 gi|261311606|gb|EEY12761.1| biotin carboxylase [Mannheimia haemolytica serotype A2 str. BOVINE]
          Length = 447

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +       L    L  +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVKLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENANFAEQVEKSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +   +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPKKNKEIAKRIGYPVIIKASGGGGGRGMRVVHHEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + IG RG    +FL+   + + +++E+N +
Sbjct: 254 QFIGERCANACREIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319442478|ref|ZP_07991634.1| pyruvate carboxylase [Corynebacterium variabile DSM 44702]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/234 (13%), Positives = 73/234 (31%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E+  +        I +         L+ DK  
Sbjct: 69  LDIDE-IIRAAKQTGADAVYPG-YGFLSENAELARKCAANGITFIGPSPETLDLTGDKSA 126

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +     G+P+      +    +        + P  +K + GG   G+  +     +  
Sbjct: 127 AVEAARKAGLPILDDSAPSEDIDELVSFAEGRTYPLFVKAVAGGGGRGMRFVASPDELAE 186

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y++   +    +    L  T+  +         L+       
Sbjct: 187 KAAEASREAAAAFGDGRVYIERAVINPQHIEVQILGDTQGNIIHLFERDCSLQRRHQKVV 246

Query: 213 HVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P   I  ++   +   A    ++I   G    +FL D     V ++E+N +
Sbjct: 247 EIAPAQHISAELRDRICADAVKFCESINYYGAGTVEFLVDENENHV-FIEMNPR 299


>gi|195953154|ref|YP_002121444.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
 gi|195932766|gb|ACG57466.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobaculum sp.
           Y04AAS1]
          Length = 475

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/317 (12%), Positives = 96/317 (30%), Gaps = 59/317 (18%)

Query: 22  CASALEDAGFKVSQID---------VDRSVGLVLAHLKP-------DLAFN--------V 57
              A ++   K   I          + ++    L  + P       +   N         
Sbjct: 17  IIRACKELDIKTVAIYSEADINSLHIKKADEAYLIPMDPIKAYLDYNKIINIAKQSGADA 76

Query: 58  LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           +H   G   E+             +            DK+++K+V+ + G+PV P     
Sbjct: 77  IHPGYGFLSENHEFAQACIDAGFIFIGPTPEQIETFGDKVKAKKVMKNLGIPVVPGSDEP 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQ 165
           I       D    I  P ++K   GG   G+ V+ K + +  +   +       +  GD 
Sbjct: 137 ITKLEDAYDIAECIGYPIILKAAYGGGGRGMRVVYKKEDLKQNFESAQKESLAFFGKGDI 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +       +   ++ D   +V  +            +            K+  ++  
Sbjct: 197 FIEKYIQRPKHIEVQILADKYGNVVHLGERDCSIQ----RRHQKIIEITPSPKLDKNVRN 252

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
           ++  ++  A    G       +F+ D  + + +++E+N +              +     
Sbjct: 253 KMLGMSVRAMMKYGYESAGTIEFILDQTTNEFYFIEMNTR----------LQVEHTITEM 302

Query: 281 -AGYSFRELLLWMVEDA 296
             G    +++  M+  A
Sbjct: 303 ITGI---DIVEQMIRIA 316


>gi|154685905|ref|YP_001421066.1| pyruvate carboxylase [Bacillus amyloliquefaciens FZB42]
 gi|154351756|gb|ABS73835.1| PycA [Bacillus amyloliquefaciens FZB42]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 80/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 66  LDI-EGIIEIAKRNGVDAIHPG-YGFLSENIQFARRCEEEGIVFIGPTSAHLDMFGDKVK 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P         +       +   P++IK   GG   G+ +++ +  + 
Sbjct: 124 AREQAEKAGIPVIPGSDGPAETLKDVEQFAKVHGFPFIIKASLGGGGRGMRIVRSESELK 183

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD   +V  +            + 
Sbjct: 184 ESFERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKEGNVVHLYERDCSVQ----RR 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  E+   A    + +G       +FL      + +++E+N +
Sbjct: 240 HQKVIEVAPSVSLQPELRDEICEAAVALAKNVGYINAGTVEFLV--AGGEFYFIEVNPR 296


>gi|157377222|ref|YP_001475822.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shewanella
           sediminis HAW-EB3]
 gi|157319596|gb|ABV38694.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shewanella
           sediminis HAW-EB3]
          Length = 456

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/158 (14%), Positives = 52/158 (32%), Gaps = 11/158 (6%)

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLL 167
            ++        I  P +IK   GG   G+ VIK +  +   +  + +     + +    +
Sbjct: 148 NHQHNKKLAEQIGYPVIIKATAGGGGRGMRVIKGEAELIQAIELTRAEALAAFANDSLYM 207

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +       +   V+ D   +   +            +             I       +
Sbjct: 208 EKYLETPRHIEIQVLSDGQGNAIHLGERDCSMQ----RKHQKVIEEAPALGIDEQTRHTI 263

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             L   A   IG RG+   +FL++    + +++E+N +
Sbjct: 264 GELCAKACIEIGYRGVGTFEFLYEA--NRFYFIEMNTR 299


>gi|123965304|ref|YP_001010385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9515]
 gi|123199670|gb|ABM71278.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9515]
          Length = 449

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/153 (13%), Positives = 51/153 (33%), Gaps = 10/153 (6%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYV 172
                 I  P +IK   GG   G+ +++   ++      +       + +    + +   
Sbjct: 145 YQMAKEIGYPVIIKATAGGGGRGMRLVENKANLEKMFKAAQGEAEAAFGNDGLYMEKFIK 204

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               +   ++ D S +V  +            +             I   + +++   A 
Sbjct: 205 KPRHVEIQILADRSGNVVHLGERDCSVQ----RRHQKLLEESPSPAINRSLREKMGNAAI 260

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A ++I   G    +FL D  +   +++E+N +
Sbjct: 261 AAAKSISYEGAGTVEFLVDDENN-FYFMEMNTR 292


>gi|71987519|ref|NP_501777.2| hypothetical protein F32B6.2 [Caenorhabditis elegans]
 gi|34555862|emb|CAB03038.2| C. elegans protein F32B6.2, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 671

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 48/148 (32%), Gaps = 10/148 (6%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
            I  P ++K + GG   G+ +   +      L  + +     + + + L+ +       +
Sbjct: 167 EIGYPVMLKAVYGGGGKGMRIAWNEAEFEEKLASARNEAKKSFGNDEMLVEKFVEKPRHV 226

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V GD   +   +            K         +     + + +   R A      
Sbjct: 227 EVQVFGDHHGNYVHLWERDCSVQRRHQKIIEEAPAPNMEHDTRVKLGESAVRAAAAVG-- 284

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               G    +F+ DP   + +++E+N +
Sbjct: 285 --YVGAGTVEFIMDPR-GEFYFMEMNTR 309


>gi|222097395|ref|YP_002531452.1| pyruvate carboxylase [Bacillus cereus Q1]
 gi|229198063|ref|ZP_04324775.1| Pyruvate carboxylase [Bacillus cereus m1293]
 gi|221241453|gb|ACM14163.1| pyruvate carboxylase [Bacillus cereus Q1]
 gi|228585421|gb|EEK43527.1| Pyruvate carboxylase [Bacillus cereus m1293]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|86450133|gb|ABC96255.1| carbamoylphosphate synthetase [Hilara lugubris]
          Length = 1296

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 427 TFGGQTALNCGVELDRVGVFAKYNVQIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +L     +++  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 487 VLSVAEALEAAEILGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|161525949|ref|YP_001580961.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189349332|ref|YP_001944960.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|221213231|ref|ZP_03586206.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD1]
 gi|160343378|gb|ABX16464.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans ATCC 17616]
 gi|189333354|dbj|BAG42424.1| acetyl-CoA carboxylase [Burkholderia multivorans ATCC 17616]
 gi|221166683|gb|EED99154.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           multivorans CGD1]
          Length = 455

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 137 ALPEDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L                ++          P   IP  +   +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIDRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 257 GDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317967968|ref|ZP_07969358.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CB0205]
          Length = 450

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AESMGYPVMIKATAGGGGRGMRLVPSADQLDNLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             I  ++ + +   A  A + 
Sbjct: 209 HVEVQVLADRHG--NVVHVGERDCSIQRRHQKLLEEAPSVAINAELRRRMGDAAVAAART 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D  +   +++E+N +
Sbjct: 267 IGYEGAGTVEFLVD-RTGNFYFMEMNTR 293


>gi|319780977|ref|YP_004140453.1| pyruvate carboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
 gi|317166865|gb|ADV10403.1| pyruvate carboxylase [Mesorhizobium ciceri biovar biserrulae
           WSM1271]
          Length = 1152

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 46/150 (30%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  I+ +  +  ++ +        +   +  L +      
Sbjct: 156 AKEIGYPVMLKASWGGGGRGMRAIRAEADLAREVTEGKREAKAAFGKDEVYLEKLIERAR 215

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD   +   +            K         L      ++            
Sbjct: 216 HVEVQVLGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLEISQREELCGHAL----KIA 271

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     G    +FL D  + K +++E+N +
Sbjct: 272 RETSYIGAGTVEFLQDADTGKFYFIEVNPR 301


>gi|293571947|ref|ZP_06682961.1| pyruvate carboxylase [Enterococcus faecium E980]
 gi|291607965|gb|EFF37273.1| pyruvate carboxylase [Enterococcus faecium E980]
          Length = 1142

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAERFGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|257898727|ref|ZP_05678380.1| pyruvate carboxylase [Enterococcus faecium Com15]
 gi|257836639|gb|EEV61713.1| pyruvate carboxylase [Enterococcus faecium Com15]
          Length = 1142

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAERFGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|257896091|ref|ZP_05675744.1| pyruvate carboxylase [Enterococcus faecium Com12]
 gi|257832656|gb|EEV59077.1| pyruvate carboxylase [Enterococcus faecium Com12]
          Length = 1142

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAERFGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|257887595|ref|ZP_05667248.1| pyruvate carboxylase [Enterococcus faecium 1,141,733]
 gi|257823649|gb|EEV50581.1| pyruvate carboxylase [Enterococcus faecium 1,141,733]
          Length = 1142

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAERFGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|227551287|ref|ZP_03981336.1| pyruvate carboxylase [Enterococcus faecium TX1330]
 gi|293377508|ref|ZP_06623704.1| pyruvate carboxylase [Enterococcus faecium PC4.1]
 gi|227179567|gb|EEI60539.1| pyruvate carboxylase [Enterococcus faecium TX1330]
 gi|292643877|gb|EFF61991.1| pyruvate carboxylase [Enterococcus faecium PC4.1]
          Length = 1142

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAERFGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKHV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|157960699|ref|YP_001500733.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella pealeana
           ATCC 700345]
 gi|157845699|gb|ABV86198.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella pealeana
           ATCC 700345]
          Length = 391

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 80/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VDR----SVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                ++     S+  ++   KPDL    L
Sbjct: 22  GKEVAIELQRYGIEVIGVDRYPNAPAMQVSHRSHVINMLDALSLKAIIDLEKPDLVIPEL 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P   +  L       +  + + +                  
Sbjct: 82  EAIATQTLVEMEAKGVNIVPTAKATQLTMDREGIRRLAAETLDIPT-SPYFFCDTEAEFN 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P V+KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 DAVATIGLPCVVKPVMSSSGKGQSVIRTQEQIESA--WQYAQEGGRAGKGRVIVEGFIPF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++               +            P  +   +  + Q +     +A+
Sbjct: 199 DYEITLLTISAVNGIHFCDAIGHRQEDG--DYRESWQPQAMSEVVLAKSQAIGKKVVEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V++ E++ +P   GM
Sbjct: 257 GGYGLFGVELFI--KGDDVYFSEVSPRPHDTGM 287


>gi|78184000|ref|YP_376435.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9902]
 gi|78168294|gb|ABB25391.1| biotin carboxylase [Synechococcus sp. CC9902]
          Length = 448

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/219 (14%), Positives = 65/219 (29%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     + +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENDKFAEMCNEHGLTFVGPSPHAIRSMGDKSTAKTTMQKVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQL 166
            +   +        +  P +IK   GG   G+ ++     +          +    G+  
Sbjct: 138 LLSNPQEAAQLAAEMGYPVMIKATAGGGGRGMRLVPSPDQLESLYKAAQGEAEAAFGNPG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           L  +          V   A        V   +      +             +  ++ ++
Sbjct: 198 LYMEKFIDRPRHVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPELRRK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A ++I   G    +FL D      +++E+N +
Sbjct: 256 MGEAAIAAARSINYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|73662537|ref|YP_301318.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           saprophyticus subsp. saprophyticus ATCC 15305]
 gi|72495052|dbj|BAE18373.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus saprophyticus subsp. saprophyticus ATCC
           15305]
          Length = 452

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/212 (14%), Positives = 69/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K+ +    VPV P     +   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYESIQKMGIKDVAKEEMKRAEVPVVPGSEGLVQDI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + ++ +      +             Y++ 
Sbjct: 141 NEAKKIATEIGYPVIIKATAGGGGKGIRVARDEKELETGFKMTQQEAETAFGNNGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +  +   V         ++          P+ I  +  ++     A  
Sbjct: 201 FIENFRHIEIQIMGDSFGNVVHLGERDCTIQRRMQKLVEEAPSPILTEEKRQEMGNAAVR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D  +   +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLDTNDFYFMEMNTR 292


>gi|311351422|gb|ADP92896.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V      +V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNEDLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|221140053|ref|ZP_03564546.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus str. JKD6009]
 gi|304380885|ref|ZP_07363545.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|269941017|emb|CBI49401.1| biotin carboxylase subunit of acetyl-CoAcarboxylase [Staphylococcus
           aureus subsp. aureus TW20]
 gi|302751358|gb|ADL65535.1| acetyl-CoA carboxylase accC (biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340612|gb|EFM06546.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|329314204|gb|AEB88617.1| Acetyl-CoA carboxylase accC (Biotin carboxylase subunit)
           [Staphylococcus aureus subsp. aureus T0131]
          Length = 451

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +      +             Y++       
Sbjct: 147 AKKIGYPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGNGGLYMEKFIENFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +      V         ++          P+ I  D  +      A  A +A+ 
Sbjct: 207 HIEIQIVGDNYGNVIHLGERDCTIQRRMQKLVEEAPSPILDDETRREMGNAAVRAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F++D    K +++E+N +
Sbjct: 267 YENAGTIEFIYDLNDNKFYFMEMNTR 292


>gi|110799124|ref|YP_695776.1| biotin carboxylase [Clostridium perfringens ATCC 13124]
 gi|168210766|ref|ZP_02636391.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           B str. ATCC 3626]
 gi|110673771|gb|ABG82758.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           perfringens ATCC 13124]
 gi|170711212|gb|EDT23394.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           B str. ATCC 3626]
          Length = 450

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K++    +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIEFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSDEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|56697387|ref|YP_167755.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3]
 gi|56679124|gb|AAV95790.1| carbamoyl-phosphate synthase, putative [Ruegeria pomeroyi DSS-3]
          Length = 456

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG  +G+  +     +     ++ S           +++        +   
Sbjct: 153 FPLLVKATAGGGGIGMQRVDDPAKLRKIAERTQSAAARSFGDGSVFLERFIARARHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
                +            L+          PA      I   +  +A     A+   G  
Sbjct: 213 VFGFGDGRAVHLHERDCSLQRRFQKVVEESPAPGLDRAIVARMGEVACALASAVNYSGAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +F+ D  + + F+LE+N +
Sbjct: 273 TVEFVMDADTGEFFFLEMNTR 293


>gi|297672603|ref|XP_002814381.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Pongo abelii]
          Length = 722

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HAGRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKPEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 310 ARAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|86450123|gb|ABC96250.1| carbamoylphosphate synthetase [Hyperperacera sp. JKM-2006]
          Length = 1297

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V+     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGVFKKYNVKIMGTPIQSIIETEDRKIFSERVAEIGEQVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALEAAETLGYPVMARAAFSLGGLGSGFANNIEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNILRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|84686582|ref|ZP_01014475.1| acetyl-CoA carboxylase [Maritimibacter alkaliphilus HTCC2654]
 gi|84665495|gb|EAQ11972.1| acetyl-CoA carboxylase [Rhodobacterales bacterium HTCC2654]
          Length = 448

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E  ++ +         +  DK+ +K+     G+PV P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHDLTFIGPSAAHIRMMGDKITAKETAEKLGIPVVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            +  P +IK   GG   G+ V + +  +      + S     + + +
Sbjct: 137 GVPDIETARKVAAEMGYPVIIKATAGGGGRGMKVAEAEAKLEHAFRTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYMEKYLQKPRHIEVQVFGDGKGGGVHLGERDCSLQ----RRHQKVFEEAPGPAISPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +   A   +G  G    +FL+     + +++E+N +
Sbjct: 253 ARIGGICADAIAEMGYAGAGTIEFLY--EDGEFYFIEMNTR 291


>gi|290975841|ref|XP_002670650.1| predicted protein [Naegleria gruberi]
 gi|284084211|gb|EFC37906.1| predicted protein [Naegleria gruberi]
          Length = 1818

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/308 (13%), Positives = 89/308 (28%), Gaps = 40/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+     D    
Sbjct: 653 SGSQAIKALKEEGIYTILVNPNIATVQTCKELADRVYFGAVTPDFVEKVIKKENADGLLL 712

Query: 57  VLHGNFGEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  VQ             +  T    +      D    K    S  +    +
Sbjct: 713 SFGGQTALNCGVQLHKSGVLEELNCRVLGTPVQSIIDTEDRDIFNQKMREISQPIADSKA 772

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG      ++ +    L + + +   Q+L+E+
Sbjct: 773 CDNVEEAILAASHIGYPVIIRAAFALGGLGSGFANDERELRE--LATQALSSSPQILVEK 830

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G             +   I V   + +     ++  +        +  D Y  ++  
Sbjct: 831 SVKGW-KEVEYEVVRDCNDNCITVCNMENFDPVGIHTGESIVVAPSQTLNNDEYHMLRTA 889

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYAGY 283
           A    + +G  G     +  +P S++   +E+N +  ++  S        +P     A  
Sbjct: 890 AIKVIRHLGIVGECNIQYALNPYSKEYVIIEVNAR--LSRSSALASKATGYPLAFVAAKL 947

Query: 284 SFR-ELLL 290
           S   EL+ 
Sbjct: 948 SLGMELID 955


>gi|206561758|ref|YP_002232523.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia J2315]
 gi|198037800|emb|CAR53744.1| biotin carboxylase [Burkholderia cenocepacia J2315]
          Length = 455

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +       + + 
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +   +   +   V+ DA  +   +            K         +P +    +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR----L 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 253 IDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|194245500|gb|ACF35359.1| carbamoylphosphate synthetase [Dineutes sublineatus]
          Length = 671

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +PD    
Sbjct: 71  SGSQAIKAMREENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIKAERPDGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     + E   +    + I A   + D+    + ++     V    +
Sbjct: 131 TFGGQTALNCGVDLQRAGVFEKYSVEILGTPIEAIIDTEDRKIFSERIAKIGEKVAPSCA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 191 VYSVQEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKS--LALQALAHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 ALNVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|158451327|gb|ABW39024.1| putative CAD trifunctional protein [Trichoplusia ni]
          Length = 488

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQAVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   Q I E   +    + I +   + D+    + V++    V    +
Sbjct: 191 TFGGQTALNCGVELEKQKIFEKYNVSVLGTPIQSIVNTEDRKIFAEKVNAIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L     +H DQL+I++
Sbjct: 251 VTTIDEALIAARQIGYPVMARSAFSLGGLGSGFANNEDELRT--LAHHGLSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAFNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIQHFGIVGEXNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|42783042|ref|NP_980289.1| pyruvate carboxylase [Bacillus cereus ATCC 10987]
 gi|42738969|gb|AAS42897.1| pyruvate carboxylase [Bacillus cereus ATCC 10987]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|107021681|ref|YP_620008.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116688627|ref|YP_834250.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia HI2424]
 gi|170731926|ref|YP_001763873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           cenocepacia MC0-3]
 gi|105891870|gb|ABF75035.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia AU 1054]
 gi|116646716|gb|ABK07357.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia HI2424]
 gi|169815168|gb|ACA89751.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           cenocepacia MC0-3]
          Length = 455

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +       + + 
Sbjct: 137 ALPDDPKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +   +   +   V+ DA  +   +            K         +P +    +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR----L 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 253 IDRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|282165548|ref|YP_003357933.1| phosphoribosylglycinamide formyltransferase 2 [Methanocella
           paludicola SANAE]
 gi|282157862|dbj|BAI62950.1| phosphoribosylglycinamide formyltransferase 2 [Methanocella
           paludicola SANAE]
          Length = 426

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 84/262 (32%), Gaps = 12/262 (4%)

Query: 31  FKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   I++   R++  ++A  +PD     +     +             P   +   A  
Sbjct: 58  HRSYPINMKSERALMAIVARERPDAIIPEIEAINIDTLFKLEKEGYFVAPCAKAVWTAMH 117

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
              +++R     +                  +   I  P V KP++  S  G  ++K  +
Sbjct: 118 --RERLREAIASTGARTSKYEYATDLESFRKACDKIGFPCVSKPIQSSSGKGSYLLKSKK 175

Query: 149 SIPLDLLQSSSWNHGD-----QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++            +  I+  V+  EL+   + +   D ++   P   +    
Sbjct: 176 DVEKAFKEAEKARGSAAKIIVEEFIDFDVEITELSVKYVNEKGRDESKFVRPLGHYQIEG 235

Query: 204 LKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +SS +        K+   I K++   +      +G  G+   +   D  + KV+  E 
Sbjct: 236 DYHSSWHPWIEDGDEKMVKKIEKQIYDYSQRIMDNLGGYGLYAHEMFIDLKNGKVYANET 295

Query: 263 NVQPGMTPVSIFPEMAAYAGYS 284
             +P      +    +   GYS
Sbjct: 296 ACRP--HDTGLVTMASMPLGYS 315


>gi|224495957|ref|NP_001139085.1| hypothetical protein LOC792190 [Danio rerio]
 gi|213627520|gb|AAI71500.1| LOC792190 protein [Danio rerio]
          Length = 711

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK ++GG   G+ + + +      L         S+N    L+ +   +  
Sbjct: 182 AARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDVMLIEKFVENPR 241

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   D   +            +             I  ++ +++   A  A 
Sbjct: 242 HVEVQVFGDQYGDAVYLFERDCSVQ----RRHQKIIEEAPGPGISPEVRRKLGEAAVRAA 297

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+   G    +F+ D      +++E+N       P         EM      +  +L+ 
Sbjct: 298 KAVNYVGAGTVEFIMDAQHN-FYFMEMNTRLQVEHP-------VSEM-----ITGTDLVE 344

Query: 291 WMVEDASCLR 300
           W +  A+  +
Sbjct: 345 WQLRVAAGEK 354


>gi|118150458|ref|NP_001071208.1| hypothetical protein LOC777632 [Danio rerio]
 gi|116487525|gb|AAI25959.1| Zgc:154106 [Danio rerio]
          Length = 711

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK ++GG   G+ + + +      L         S+N    L+ +   +  
Sbjct: 182 AARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDVMLIEKFVENPR 241

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   D   +            +             I  ++ +++   A  A 
Sbjct: 242 HVEVQVFGDQYGDAVYLFERDCSVQ----RRHQKIIEEAPGPGISPEVRRKLGEAAVRAA 297

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+   G    +F+ D      +++E+N       P         EM      +  +L+ 
Sbjct: 298 KAVNYVGAGTVEFIMDAQHN-FYFMEMNTRLQVEHP-------VSEM-----ITGTDLVE 344

Query: 291 WMVEDASCLR 300
           W +  A+  +
Sbjct: 345 WQLRVAAGEK 354


>gi|57529595|ref|NP_001006551.1| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           [Gallus gallus]
 gi|53132373|emb|CAG31898.1| hypothetical protein RCJMB04_13e11 [Gallus gallus]
          Length = 713

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +   ++     L  +              ++      
Sbjct: 185 HAMRIGYPVMIKAVRGGGGKGMRIAHSEKEFLDQLESARREAKKSFNDDAMLIEKFVDNP 244

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
           G +                     ++          P   I  ++ K +   A  A +A+
Sbjct: 245 GHVEVQVFGDQHGNAVYLFERDCSVQRRHQKIIEEAPGPGINPEVRKRLGEAAVKAAKAV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 305 NYVGAGTVEFIMDSQHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 351

Query: 294 EDASCLR 300
             A+  +
Sbjct: 352 RVAAGEK 358


>gi|113678532|ref|NP_001038380.1| hypothetical protein LOC559969 [Danio rerio]
 gi|94732265|emb|CAK11001.1| novel protein similar to vertebrate methylcrotonoyl-Coenzyme A
           carboxylase 1 (alpha) (MCCC1) [Danio rerio]
          Length = 711

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/190 (15%), Positives = 63/190 (33%), Gaps = 27/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK ++GG   G+ + + +      L         S+N    L+ +   +  
Sbjct: 182 AARIGYPVMIKAVRGGGGKGMRIAQSEAEFHEQLESARREARKSFNDDVMLIEKFVENPR 241

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   D   +            +             I  ++ +++   A  A 
Sbjct: 242 HVEVQVFGDQYGDAVYLFERDCSVQ----RRHQKIIEEAPGPGISPEVRRKLGEAAVRAA 297

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
           +A+   G    +F+ D      +++E+N       P         EM      +  +L+ 
Sbjct: 298 KAVNYVGAGTVEFIMDAQHN-FYFMEMNTRLQVEHP-------VSEM-----ITGTDLVE 344

Query: 291 WMVEDASCLR 300
           W +  A+  +
Sbjct: 345 WQLRVAAGEK 354


>gi|115524266|ref|YP_781177.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodopseudomonas
           palustris BisA53]
 gi|115518213|gb|ABJ06197.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Rhodopseudomonas palustris BisA53]
          Length = 671

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++ +  + P  L  + S   G        ++   +   
Sbjct: 157 AGRIGFPVMIKAVAGGGGRGMRLVNEAAAFPDALRSARSEAQGAFGDPTVILERAIVEPR 216

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          P+    + + +++  +A  A +AIG
Sbjct: 217 HIEIQVFGDRYGHAIHLGERDCSVQRRHQKLIEEAPSPAVSEALREKMGTVAVNAVKAIG 276

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + +++E+N +
Sbjct: 277 YEGAGTLEFLLDAQ-GEFYFMEMNTR 301


>gi|303233391|ref|ZP_07320060.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
 gi|302480520|gb|EFL43611.1| conserved hypothetical protein [Atopobium vaginae PB189-T1-4]
          Length = 474

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/170 (12%), Positives = 53/170 (31%), Gaps = 11/170 (6%)

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQS 157
                   +         +  P + KP                I  ++  Q +   + + 
Sbjct: 180 HTWRISCADPAPHIPFDELHFPVIAKPANSAEYHYAEFEGKKKIFEVQTPQELQTIVTRL 239

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           ++  + ++LL++ ++ G +     +   + + +   +                     P 
Sbjct: 240 AASTYTNELLVQDFIPGDDDGLCSVTLFADEHSVCTLSCMAR---VALQDHDPVAIGNPV 296

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
            +     ++V   A    Q +G  G +  D  +DP      + EIN +PG
Sbjct: 297 CMVQHRVEDVISNAKQFLQRVGYVGYANFDVKYDPRDGSYRFFEINTRPG 346


>gi|331268241|ref|YP_004394733.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
 gi|329124791|gb|AEB74736.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
          Length = 450

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 102/314 (32%), Gaps = 51/314 (16%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLV--------LAHLKPDLAFN--------------- 56
              A  + G +   +  D+D++   V        +   KP  ++                
Sbjct: 20  IIRACRELGIETVAVYSDIDKNALHVQMADEAVCIGPAKPSESYLNMENIISATVLTGAQ 79

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +    I       +K ++++++    VP+ P    
Sbjct: 80  AIHPGFGFLSENSKFAEMCNDCNIVFIGPDIDTMNNMGNKSKAREIMLKAQVPIVPGTEG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +  +     I  P +IK   GG   GI +++ ++ +      +            
Sbjct: 140 DVDTVKDALKEAERIGYPVMIKAAAGGGGRGIRIVRTNEDLGKMFETAKREAEVAFGDGS 199

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++  +       P   +  ++ +++ 
Sbjct: 200 MYMEKFVENPRHVEFQILGDNYGNVVHLGERDCSIQRRNQKVLEETPCPIMTEELREKMG 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
            +A  A +A+  +G    +FL D      +++E+N       P +T +          G 
Sbjct: 260 SVAVRAAKAVKYKGAGTIEFLLD-NKGDFYFMEMNTRIQVEHP-ITEM--------VTGI 309

Query: 284 SFRELLLWMVEDAS 297
              +L+   ++ AS
Sbjct: 310 ---DLIKEQIKVAS 320


>gi|260575572|ref|ZP_05843570.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter sp. SW2]
 gi|259022215|gb|EEW25513.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodobacter sp. SW2]
          Length = 457

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 71/216 (32%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+      LE  E+ +         +  DK+ +K+ + + GVP  P     +   
Sbjct: 91  YGFLSENAAFAQALEDHELVFIGPTAEHIRIMGDKITAKETMRALGVPCVPGSDGGVPDY 150

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
              +     I  P +IK   GG   G+ V    + + +          S++ + +  + +
Sbjct: 151 ESAIGVAAGIGFPVIIKATAGGGGRGMKVANNPEELEIAFRTARAEAKSAFGNDEVYIEK 210

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V GD       +            +             I   +   + +
Sbjct: 211 YLQKPRHIEVQVFGDGKGRAVHLGERDCSLQ----RRHQKVLEEAPGPVITPALRARIGK 266

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  AI   G    +FL+     + F++E+N +
Sbjct: 267 VCAEAVAAINYIGAGTIEFLY--EDGEFFFIEMNTR 300


>gi|46138797|ref|XP_391089.1| hypothetical protein FG10913.1 [Gibberella zeae PH-1]
          Length = 1834

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 87/247 (35%), Gaps = 7/247 (2%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLA-HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           AL+  G  VS   ++    L LA H   D      +G   E+    A +E   + +    
Sbjct: 689 ALKLRGASVSDTYLNMDQILELAVHSSVDAIIPG-YGFLSENADFAAAVEDRGMTWVGPT 747

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSL 139
               A    K R++ +    GVPV P   +   ++       + I  P ++K   GG  +
Sbjct: 748 PQQMAELGLKHRARSIAVKVGVPVIPGCEMLLESLKEAILESNKIGFPLMLKSTAGGGGI 807

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+   K  + +             +      +++        +    L      V  +  
Sbjct: 808 GLSYCKDVEGLSATFEVVQRQAVANFGDGGVFLERYIERARHVEIQILGDGTGRVVSAGE 867

Query: 200 YSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               L+          PA +    +  E++  A     ++  R +   +F++D  +++ +
Sbjct: 868 RDCSLQRRHQKIVEESPAGMIPKSVRTEMKEAALRLASSVRYRNVGTVEFIYDLDTKEYY 927

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 928 FLEVNTR 934


>gi|331091784|ref|ZP_08340616.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402683|gb|EGG82250.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 421

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/247 (14%), Positives = 78/247 (31%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN-----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   +   A        +H   G   E+     + E   I +    
Sbjct: 47  EAICIGPAPSRESYLNMERIISATITSGADAIHTGFGFLSENSKFAELCEKCHIIFIGPK 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   +K +++  +   G+PV P     IL      +    +  P +IK + GG   
Sbjct: 107 SEVIRKMGNKSQARNTMIEAGIPVIPGSSEIILDMERGKEVAVKVGYPVIIKAVLGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V   ++        +             Y++        +    L      V     
Sbjct: 167 GMRVAYTEEEFSKSFQMAQEEAKASFGDNSMYIEHFVENPRHVEFQILADKYGNVVHLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++ +        P  I   ++ +++  +A  A +A+    +   +FL    + + +
Sbjct: 227 RDCSIQENHQKLIEESPCTILSEELRRKMGEVAVKAAKAVQYENVGTIEFLL-ENNNQFY 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FMEMNTR 292


>gi|313677288|ref|YP_004055284.1| acetyl-CoA carboxylase, biotin carboxylase [Marivirga tractuosa DSM
           4126]
 gi|312943986|gb|ADR23176.1| acetyl-CoA carboxylase, biotin carboxylase [Marivirga tractuosa DSM
           4126]
          Length = 451

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 16/146 (10%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ ++  ++        +             Y++       
Sbjct: 148 AKDMGYPVILKATAGGGGKGMRIVNNEEEFKKAWDSARQEAGASFGNEGLYLEKFVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          P   +  ++   + + A    +A+G
Sbjct: 208 HVEIQIVGDKNGRACHLSERDCSIQRRHQKLIEETPCPVMTDELRDAMGKAAIAGAEAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  +   +++E+N +
Sbjct: 268 YEGAGTIEFLLDKHNN-FYFMEMNTR 292


>gi|323525315|ref|YP_004227468.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1001]
 gi|323382317|gb|ADX54408.1| phosphoribosylglycinamide formyltransferase 2 [Burkholderia sp.
           CCGE1001]
          Length = 407

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/270 (12%), Positives = 75/270 (27%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       +P L    +
Sbjct: 27  GKEVIIALQRLGVEVIAVDRYPNAPGHQVAHRSHVIDMTDRAALRALVEQERPHLIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  T      +       R                       
Sbjct: 87  EAIATDALAAIESDGIAEVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDELR 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++ +  +      +      +  ++++E ++D   
Sbjct: 147 AGIAQVGYPCVVKPVMSSSGKGQSVLRSEADVEPAWQYAMAGGRVNHGRVIVEGFIDFEY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A                  ++ +        P  +     +  + +A     
Sbjct: 207 EITQLTVRAVAPSNGEVATYFCDPIGHVQVAGDYVESWQPQPMSPLALERSREVAHKVTA 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           A+G RG+   +         V++ E++ +P
Sbjct: 267 ALGGRGLFGVELFV--RGDDVWFSEVSPRP 294


>gi|254721549|ref|ZP_05183338.1| pyruvate carboxylase [Bacillus anthracis str. A1055]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|302345600|ref|YP_003813953.1| carbamoyl-phosphate synthase, large subunit [Prevotella
           melaninogenica ATCC 25845]
 gi|302149857|gb|ADK96119.1| carbamoyl-phosphate synthase, large subunit [Prevotella
           melaninogenica ATCC 25845]
          Length = 1074

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELDKTGVLKKYNVKVLGTPVKAIMDTEDRELFVERLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      +  +    L   +++   Q+L+E+
Sbjct: 148 CEDIQQARVAAKNLGYPVIVRAAYALGGLGSGFADNEDELNT--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|228916584|ref|ZP_04080150.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
 gi|228843163|gb|EEM88245.1| Pyruvate carboxylase [Bacillus thuringiensis serovar pulsiensis
           BGSC 4CC1]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228935262|ref|ZP_04098088.1| Pyruvate carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
 gi|228824427|gb|EEM70233.1| Pyruvate carboxylase [Bacillus thuringiensis serovar andalousiensis
           BGSC 4AW1]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228947666|ref|ZP_04109956.1| Pyruvate carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
 gi|228812186|gb|EEM58517.1| Pyruvate carboxylase [Bacillus thuringiensis serovar monterrey BGSC
           4AJ1]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229123468|ref|ZP_04252667.1| Pyruvate carboxylase [Bacillus cereus 95/8201]
 gi|228659955|gb|EEL15596.1| Pyruvate carboxylase [Bacillus cereus 95/8201]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229186187|ref|ZP_04313356.1| Pyruvate carboxylase [Bacillus cereus BGSC 6E1]
 gi|228597363|gb|EEK55014.1| Pyruvate carboxylase [Bacillus cereus BGSC 6E1]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|225865929|ref|YP_002751307.1| pyruvate carboxylase [Bacillus cereus 03BB102]
 gi|225786784|gb|ACO27001.1| pyruvate carboxylase [Bacillus cereus 03BB102]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|196045771|ref|ZP_03113000.1| pyruvate carboxylase [Bacillus cereus 03BB108]
 gi|196023211|gb|EDX61889.1| pyruvate carboxylase [Bacillus cereus 03BB108]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|196038856|ref|ZP_03106164.1| pyruvate carboxylase [Bacillus cereus NVH0597-99]
 gi|301055438|ref|YP_003793649.1| pyruvate carboxylase [Bacillus anthracis CI]
 gi|196030579|gb|EDX69178.1| pyruvate carboxylase [Bacillus cereus NVH0597-99]
 gi|300377607|gb|ADK06511.1| pyruvate carboxylase [Bacillus cereus biovar anthracis str. CI]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|196035904|ref|ZP_03103306.1| pyruvate carboxylase [Bacillus cereus W]
 gi|195991553|gb|EDX55519.1| pyruvate carboxylase [Bacillus cereus W]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|167633772|ref|ZP_02392096.1| pyruvate carboxylase [Bacillus anthracis str. A0442]
 gi|170688779|ref|ZP_02879983.1| pyruvate carboxylase [Bacillus anthracis str. A0465]
 gi|254683714|ref|ZP_05147574.1| pyruvate carboxylase [Bacillus anthracis str. CNEVA-9066]
 gi|254743950|ref|ZP_05201633.1| pyruvate carboxylase [Bacillus anthracis str. Kruger B]
 gi|167531178|gb|EDR93865.1| pyruvate carboxylase [Bacillus anthracis str. A0442]
 gi|170667295|gb|EDT18054.1| pyruvate carboxylase [Bacillus anthracis str. A0465]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|218905078|ref|YP_002452912.1| pyruvate carboxylase [Bacillus cereus AH820]
 gi|218537792|gb|ACK90190.1| pyruvate carboxylase [Bacillus cereus AH820]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|118479164|ref|YP_896315.1| pyruvate carboxylase [Bacillus thuringiensis str. Al Hakam]
 gi|229092996|ref|ZP_04224127.1| Pyruvate carboxylase [Bacillus cereus Rock3-42]
 gi|118418389|gb|ABK86808.1| pyruvate carboxylase [Bacillus thuringiensis str. Al Hakam]
 gi|228690367|gb|EEL44153.1| Pyruvate carboxylase [Bacillus cereus Rock3-42]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|7245|emb|CAA39077.1| glutamine-dependent carbamyl phosphate synthetase [Dictyostelium
           discoideum]
          Length = 1042

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                      SV  V+ +  PD    
Sbjct: 21  SGSQAIKALKEEGIKTILINPNIATVQTSPGLADKVYFLPVNASSVQKVIENENPDGILV 80

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPS 110
              G      G +     ILE        + I     + D+    +     +  +    +
Sbjct: 81  TFGGQTALNCGIELYKSGILEKYNCKVLGTPIETIIATEDRGIFAEKLSEINERIAPSMA 140

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P +++       LG       + +   + ++ +     Q+L+E+
Sbjct: 141 CNSLEESLIEAEKIGYPVIVRAAYCLGGLGSGFADNKEQLTALVTEAMAT--SSQVLVEK 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 199 SLKGW-KEIEYEVLRDSKDNCITVCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRET 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P S +   +E+N +  ++  S     +   GY   
Sbjct: 258 AIKTVRHLGVIGECNIQYSLNPYSEEYCIIEVNAR--LSRSS--ALASKATGYPLA 309



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 106/316 (33%), Gaps = 45/316 (14%)

Query: 7   GISSERE---VSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA 54
           G S E +   VS      C   L   G K   I         D D    L    L  +  
Sbjct: 555 GSSVEFDWCAVS------CIRTLRSLGLKSIMINFNPETVSTDYDECDYLYFEELSLERV 608

Query: 55  FNV---------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++               + G    +  +      +++  TH  ++ SA +  K      
Sbjct: 609 LDIYERGGPNSNHGVILSVGGQIPNNLAIPLSRCNVKVLGTHPDMIDSAENRYKFSRLLD 668

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P+   +     T D    +  P +++P    S   + V+   Q +   L ++++
Sbjct: 669 TIGIDQPLWKELTSVSDTKDFCESVGFPCLVRPSYVLSGAAMNVVHSSQDLETFLTEAAA 728

Query: 160 WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    ++I ++  +  E+    + D    V        +         S ++T V PA+
Sbjct: 729 VSRDHPVVISKFIQEAKEIEIDAVADNGRIVLFAISEHVEN----AGVHSGDATIVCPAQ 784

Query: 219 IPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              D    +V+  A    +A+   G     F+    + ++  +E N++      S FP +
Sbjct: 785 DLDDATILKVEETARKIAEALNVSGPFNIQFI--AKNNEIKVIECNLR---CSRS-FPFV 838

Query: 278 AAYAGYSFRELLLWMV 293
           +     +F EL   ++
Sbjct: 839 SKTLNINFIELATKII 854


>gi|49478462|ref|YP_038009.1| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
 gi|49330018|gb|AAT60664.1| pyruvate carboxylase [Bacillus thuringiensis serovar konkukian str.
           97-27]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|18310056|ref|NP_561990.1| biotin carboxylase [Clostridium perfringens str. 13]
 gi|18144735|dbj|BAB80780.1| acetyl-CoA carboxylase [Clostridium perfringens str. 13]
          Length = 450

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K+     +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEDDFISNYNTAKSEAQANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSDEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|30264018|ref|NP_846395.1| pyruvate carboxylase [Bacillus anthracis str. Ames]
 gi|47529455|ref|YP_020804.1| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186857|ref|YP_030109.1| pyruvate carboxylase [Bacillus anthracis str. Sterne]
 gi|65321343|ref|ZP_00394302.1| COG1038: Pyruvate carboxylase [Bacillus anthracis str. A2012]
 gi|165872192|ref|ZP_02216831.1| pyruvate carboxylase [Bacillus anthracis str. A0488]
 gi|167641016|ref|ZP_02399273.1| pyruvate carboxylase [Bacillus anthracis str. A0193]
 gi|170705876|ref|ZP_02896339.1| pyruvate carboxylase [Bacillus anthracis str. A0389]
 gi|177654299|ref|ZP_02936228.1| pyruvate carboxylase [Bacillus anthracis str. A0174]
 gi|190566122|ref|ZP_03019041.1| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I]
 gi|227816721|ref|YP_002816730.1| pyruvate carboxylase [Bacillus anthracis str. CDC 684]
 gi|229601337|ref|YP_002868247.1| pyruvate carboxylase [Bacillus anthracis str. A0248]
 gi|254736059|ref|ZP_05193765.1| pyruvate carboxylase [Bacillus anthracis str. Western North America
           USA6153]
 gi|254754271|ref|ZP_05206306.1| pyruvate carboxylase [Bacillus anthracis str. Vollum]
 gi|254758038|ref|ZP_05210065.1| pyruvate carboxylase [Bacillus anthracis str. Australia 94]
 gi|30258663|gb|AAP27881.1| pyruvate carboxylase [Bacillus anthracis str. Ames]
 gi|47504603|gb|AAT33279.1| pyruvate carboxylase [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180784|gb|AAT56160.1| pyruvate carboxylase [Bacillus anthracis str. Sterne]
 gi|164712139|gb|EDR17677.1| pyruvate carboxylase [Bacillus anthracis str. A0488]
 gi|167511066|gb|EDR86455.1| pyruvate carboxylase [Bacillus anthracis str. A0193]
 gi|170129416|gb|EDS98280.1| pyruvate carboxylase [Bacillus anthracis str. A0389]
 gi|172080789|gb|EDT65870.1| pyruvate carboxylase [Bacillus anthracis str. A0174]
 gi|190563041|gb|EDV17007.1| pyruvate carboxylase [Bacillus anthracis Tsiankovskii-I]
 gi|227004854|gb|ACP14597.1| pyruvate carboxylase [Bacillus anthracis str. CDC 684]
 gi|229265745|gb|ACQ47382.1| pyruvate carboxylase [Bacillus anthracis str. A0248]
          Length = 1148

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|66819073|ref|XP_643196.1| hypothetical protein DDB_G0276335 [Dictyostelium discoideum AX4]
 gi|166208504|sp|P20054|PYR1_DICDI RecName: Full=Protein PYR1-3; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate synthase;
           Includes: RecName: Full=Aspartate carbamoyltransferase;
           Includes: RecName: Full=Dihydroorotase
 gi|60471286|gb|EAL69248.1| hypothetical protein DDB_G0276335 [Dictyostelium discoideum AX4]
          Length = 2225

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 89/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                      SV  V+ +  PD    
Sbjct: 426 SGSQAIKALKEEGIKTILINPNIATVQTSPGLADKVYFLPVNASSVQKVIENENPDGILV 485

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPS 110
              G      G +     ILE        + I     + D+    +     +  +    +
Sbjct: 486 TFGGQTALNCGIELYKSGILEKYNCKVLGTPIETIIATEDRGIFAEKLSEINERIAPSMA 545

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 ++     I  P +++       LG       + +   + ++ +     Q+L+E+
Sbjct: 546 CNSLEESLIEAEKIGYPVIVRAAYCLGGLGSGFADNKEQLTALVTEAMAT--SSQVLVEK 603

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 604 SLKGW-KEIEYEVLRDSKDNCITVCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRET 662

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  +P S +   +E+N +  ++  S     +   GY   
Sbjct: 663 AIKTVRHLGVIGECNIQYSLNPYSEEYCIIEVNAR--LSRSS--ALASKATGYPLA 714



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 52/316 (16%), Positives = 106/316 (33%), Gaps = 45/316 (14%)

Query: 7    GISSERE---VSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA 54
            G S E +   VS      C   L   G K   I         D D    L    L  +  
Sbjct: 960  GSSVEFDWCAVS------CIRTLRSLGLKSIMINFNPETVSTDYDECDYLYFEELSLERV 1013

Query: 55   FNV---------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             ++               + G    +  +      +++  TH  ++ SA +  K      
Sbjct: 1014 LDIYERGGPNSNHGVILSVGGQIPNNLAIPLSRCNVKVLGTHPDMIDSAENRYKFSRLLD 1073

Query: 100  VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                  P+   +     T D    +  P +++P    S   + V+   Q +   L ++++
Sbjct: 1074 TIGIDQPLWKELTSVSDTKDFCESVGFPCLVRPSYVLSGAAMNVVHSSQDLETFLTEAAA 1133

Query: 160  WNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
             +    ++I ++  +  E+    + D    V        +         S ++T V PA+
Sbjct: 1134 VSRDHPVVISKFIQEAKEIEIDAVADNGRIVLFAISEHVEN----AGVHSGDATIVCPAQ 1189

Query: 219  IPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               D    +V+  A    +A+   G     F+    + ++  +E N++      S FP +
Sbjct: 1190 DLDDATILKVEETARKIAEALNVSGPFNIQFI--AKNNEIKVIECNLR---CSRS-FPFV 1243

Query: 278  AAYAGYSFRELLLWMV 293
            +     +F EL   ++
Sbjct: 1244 SKTLNINFIELATKII 1259


>gi|209885107|ref|YP_002288964.1| acetyl-CoA carboxylase [Oligotropha carboxidovorans OM5]
 gi|209873303|gb|ACI93099.1| acetyl-CoA carboxylase [Oligotropha carboxidovorans OM5]
          Length = 451

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 71/219 (32%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP-- 109
           D      +G   E+     IL    + +            DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILTEHGVDFIGPKAEHIRTMGDKIEAKKTAKRLGIPVVPGS 134

Query: 110 --SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             S+  N   M     I  P ++K   GG   G+ V   +  + + L  +S+        
Sbjct: 135 DGSVTPNDEAMAIAKKIGFPVLVKAAAGGGGRGMKVAHTEADLMMALTTASNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-E 226
              Y++        +    L                L+          P+ I     +  
Sbjct: 195 GSVYLEKYLAKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQKVWEESPSPIISKQARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A + +   G+   +FL+     + +++E+N +
Sbjct: 255 IGEICAKAMREMKYVGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|165977309|ref|YP_001652902.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 3 str. JL03]
 gi|303249705|ref|ZP_07335910.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|307251138|ref|ZP_07533060.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|307253556|ref|ZP_07535424.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|307257972|ref|ZP_07539725.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
 gi|165877410|gb|ABY70458.1| biotin carboxylase [Actinobacillus pleuropneumoniae serovar 3 str.
           JL03]
 gi|302651517|gb|EFL81668.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae serovar 6 str. Femo]
 gi|306856804|gb|EFM88938.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 4 str.
           M62]
 gi|306858936|gb|EFM90981.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 6 str.
           Femo]
 gi|306863519|gb|EFM95449.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 10 str.
           D13039]
          Length = 447

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|149926551|ref|ZP_01914812.1| phosphoribosylglycinamide formyltransferase 2 [Limnobacter sp.
           MED105]
 gi|149824914|gb|EDM84128.1| phosphoribosylglycinamide formyltransferase 2 [Limnobacter sp.
           MED105]
          Length = 413

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 91/291 (31%), Gaps = 39/291 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    A +  G +V  +D                +D     ++  ++A  +P +    +
Sbjct: 31  GKEVIIAFQRLGVEVIAVDRYPNAPGHQVAHRFHVIDMTNANALKALIAQERPHIVVPEI 90

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
                        LE   +        A+ L+M++   +++ +      C          
Sbjct: 91  E---AIATPALKELEAEGVVRVVPTANAAWLTMNREGIRRLAAEELNLSCSHYAFADDFE 147

Query: 118 ---------MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQL 166
                    +DS+  +  P +IKP+   S  G   +     +        S+   +  ++
Sbjct: 148 TLKRAVEKGIDSKKPVGYPCIIKPVMSSSGKGQSKVDDASELEAAWDYAGSAGRVNSGRV 207

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + E  ++       +   +    +             ++ S        P  + +    E
Sbjct: 208 IAESLIEFEYEITLLTVRSRNPKSGAIETSYCEPVGHVQVSGDYIESWQPQAMSVKALDE 267

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +++A L   A+G  G+   +        +V++ E++ +P      +   +
Sbjct: 268 ARKMADLVTTALGGTGLFGVEMFV--KGDQVWFSEVSPRP--HDTGMVTMI 314


>gi|189345747|ref|YP_001942276.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium limicola DSM
           245]
 gi|189339894|gb|ACD89297.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium limicola DSM
           245]
          Length = 447

 Score = 50.3 bits (118), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ +D  +   L  + +           Y++       
Sbjct: 148 AEKTGYPVIIKPTAGGGGKGMRVVHEDSQLDKALKTARNEAEQAFGNSGVYIEKYLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+    D + K +   A  A +AI 
Sbjct: 208 HVEIQILSDQHGNTIHLGERDCTVQRRHQKLIEETPSPAVDDALRKRMGDAAVAAARAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDRHRN-FYFMEMNTR 292


>gi|319900043|ref|YP_004159771.1| carbamoyl-phosphate synthase large subunit [Bacteroides helcogenes
           P 36-108]
 gi|319415074|gb|ADV42185.1| carbamoyl-phosphate synthase large subunit [Bacteroides helcogenes
           P 36-108]
          Length = 1075

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDR-SVGLVLAHLKPDLAFN 56
           SG     AL + G                     KV  + V    V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIGSVLVNPNIATIQTSEGIADKVYFLPVTPYFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +L    +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYRNGVLRKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG  +   ++S     L  SS+    Q+L+E+
Sbjct: 147 VESMEDALEAAREIGYPVMVRSAYALGGLGSGICPDEESFIK--LAESSFTFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|311351424|gb|ADP92897.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351430|gb|ADP92900.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351592|gb|ADP92981.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 90/191 (47%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V     ++V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWVMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  K+  +++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVKLNENLHKEVEKMALETYKLLKCDVYARVDMLV--K 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|309364826|emb|CAP24358.2| hypothetical protein CBG_03464 [Caenorhabditis briggsae AF16]
          Length = 686

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP---------------DLAFN----- 56
                +     G +   +  D DR+   V    K                D   N     
Sbjct: 31  AIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLASESYLNMDKIINTALRS 90

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+           + +      A      K  SKQ++    VPV   
Sbjct: 91  GAQAIHPGYGFLSENAGFAERCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKG 150

Query: 111 ILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
                            I  P ++K + GG   G+ +   ++     L  + +     + 
Sbjct: 151 FHGEDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEEEFDEKLASARNEAKKSFG 210

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + + L+ +       +   V GD   +   +            +             +  
Sbjct: 211 NDEMLVEKFVERPRHVEVQVFGDHHGNYVHLWERDCSVQ----RRHQKIIEEAPAPNMTH 266

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++   A  A  A+G  G    +F+ DP   + +++E+N +
Sbjct: 267 ENRLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFYFMEMNTR 309


>gi|227111593|ref|ZP_03825249.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 392

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 31/282 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D      L    +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGDALKALVEAERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVTLEKQGHHVVPCAEATRLTMNREGIRRLAAETLGVPT-STYRFADSEENFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  +I+  + +             G   +I + +   + 
Sbjct: 143 QAVETIGYPCIVKPVMSSSGKGQSLIRSAEQLDQAWHYAQQGGRAGGGRVIVEGLVNFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P ++     +  Q++A    +A
Sbjct: 203 EITLLTIHAVDGIHFCAPIGHRQE-----DGDYRESWQPQQMSALAQERAQKMASDVVKA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 258 LGGYGLFGVELFVC--GDEVIFSEVSPRP--HDTGMVTMISQ 295


>gi|228902453|ref|ZP_04066607.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 4222]
 gi|228857197|gb|EEN01703.1| Pyruvate carboxylase [Bacillus thuringiensis IBL 4222]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/240 (13%), Positives = 75/240 (31%), Gaps = 11/240 (4%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVEKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +     ++ S         E YV+        +    L   E  V         ++ 
Sbjct: 180 SEELGESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVAHLYERDCSVQR 239

Query: 207 SSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  + P+     D+ + +   A    + +        +FL      + +++E+N +
Sbjct: 240 RHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDEFYFIEVNPR 297


>gi|241948777|ref|XP_002417111.1| urea amidolyase (including urea carboxylase and allophanate
           hydrolase), putative [Candida dubliniensis CD36]
 gi|223640449|emb|CAX44701.1| urea amidolyase (including urea carboxylase and allophanate
           hydrolase), putative [Candida dubliniensis CD36]
          Length = 1813

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/318 (12%), Positives = 87/318 (27%), Gaps = 59/318 (18%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
               L+  G K   I  D D+     L     D+A   LHG    +  +     +     
Sbjct: 630 IIKTLKKLGVKSIAIYSDPDKYAQHSLLA---DVAIP-LHGTTAAETYINIEKVIKAAKD 685

Query: 80  THSGIL---ASALSMDKMRSKQVVSSCGVPVCPS-------------------------- 110
           + +  +      LS +   S +      V V PS                          
Sbjct: 686 SGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVP 745

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +   +   +    +  P ++K   GG  +G+  +  ++ I                
Sbjct: 746 GSGLVKDAKEAREIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKSYFG 805

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +++        +    L                L+  +       PA    +  + 
Sbjct: 806 DSGVFLERFVENARHVEIQMLGDGNGNAIAVGERDCSLQRRNQKIIEETPAPNLPEETRS 865

Query: 227 VQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
             R A       +  +     ++++DP   + ++LE+N +              +     
Sbjct: 866 KMRKAAESLGSTMKYKCAGTVEYIYDPKRDEFYFLEVNAR----------LQVEHPITEM 915

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+ WM+  A+
Sbjct: 916 VTGL---DLVEWMLLIAA 930


>gi|168215278|ref|ZP_02640903.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           CPE str. F4969]
 gi|170713325|gb|EDT25507.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           CPE str. F4969]
          Length = 450

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 76/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K+     +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEDDFISNYNTAKSEAKANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSDEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|149372088|ref|ZP_01891358.1| carbamoyl-phosphate synthase large subunit [unidentified
           eubacterium SCB49]
 gi|149354855|gb|EDM43417.1| carbamoyl-phosphate synthase large subunit [unidentified
           eubacterium SCB49]
          Length = 950

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/262 (13%), Positives = 84/262 (32%), Gaps = 17/262 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G       +   LE   +    +   A
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQ--TALKLAEKLERYGVKILGTSFKA 677

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+     ++    +P     +             +  P +I+P       G+ ++
Sbjct: 678 LDLAEDRGSFSTILKDLEIPYPKFGVAETTDEALALSDQLDFPLLIRPSYVLGGQGMKIV 737

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              Q +   ++        ++LL++ Y+DG IE     + D         +   +     
Sbjct: 738 INKQELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIH 797

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                 ++  + P  +   + ++++        A+   G+    F        V+ +E N
Sbjct: 798 SG---DSNATLPPFNLGEFVMQQIKDHTKKIALALNTVGLINIQFAV--KDDVVYIIEAN 852

Query: 264 VQPGMTPVSIFPEMAAYAGYSF 285
            +   T     P +A   G  +
Sbjct: 853 PRASRT----VPFIAKAYGEPY 870



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L    + D   
Sbjct: 29  SGSQSLRSLREDGIETILINSNPATIMTDPSMADHIYLKPLTTKSIIEILKEHPQIDAVL 88

Query: 56  NVLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +       + I +   +      I A  ++ D+ + + ++   GVP+    
Sbjct: 89  PTMGGQTALNLAIEADEKGIWKDFNVELIGVDIAAINITEDREQFRNLMLDIGVPMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G   + K++     L      +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLVIRASYTLGGAGAAFVYKEEDFDQLLTHGLEVSPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   I     +     +      +             +    
Sbjct: 209 KALIGWKEYELELLRDANDNVVIICAIENMDPMGIHTGDSITVAPAMTLSDKTYQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIHMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328


>gi|86450109|gb|ABC96243.1| carbamoylphosphate synthetase [Oreogeton scopifer]
          Length = 1276

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVVEALEAAETLGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|148926279|ref|ZP_01809964.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845450|gb|EDK22543.1| biotin carboxylase [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 455

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/243 (18%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 95  YGFLSENQNFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 154

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 155 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 214

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +  +   V         ++          PA +  +     +   A  
Sbjct: 215 YIQNPRHIEVQVIGDSFGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAVK 274

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 275 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 326

Query: 294 EDA 296
           + A
Sbjct: 327 KVA 329


>gi|2243024|dbj|BAA21087.1| carbamyl phosphate synthase [Leishmania mexicana]
          Length = 1520

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++ ++      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMVLSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDNLGVPQPEWISATSVEQVHEFCDRVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEDATEYDV--DIVAHHGRVLCYGICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL       +  +E NV+         P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GHLRVIEANVR----KFRSVP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 95/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  +++    +   +  +       Q+L+E
Sbjct: 513 AVTSVEEAVVASKDIGFPMMVRAAYCLGGQGSGIVENMAELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGVHTGESIVVAPSQTLSNDEFHHLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|105892556|gb|ABF75721.1| carbamoyl-phosphate synthase large subunit [Burkholderia
           cenocepacia AU 1054]
 gi|116647403|gb|ABK08044.1| carbamoyl-phosphate synthase large subunit [Burkholderia
           cenocepacia HI2424]
          Length = 1048

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/300 (11%), Positives = 82/300 (27%), Gaps = 38/300 (12%)

Query: 27  EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF--G 63
            + G+KV  +         D +              V  ++   +PD     + G     
Sbjct: 2   REEGYKVVLVNSNPATIMTDPNTADVTYIEPITWEVVARIIEKERPDAILPTMGGQTALN 61

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
               +     L +      G    A+   + R K   +   + +  +      +M+    
Sbjct: 62  CALDLHHHGVLEKFGVELIGASPEAIDKAEDRQKFKEAMTKIGLGSAKSGIAHSMEEATK 121

Query: 124 IS-----------PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +             P VI+P       G  +    +       +    +   +LLIE+ +
Sbjct: 122 VHAEIMAETGGSGYPVVIRPSFTLGGSGGGIAYNREEFEEICKRGLDLSPTRELLIEESL 181

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +     D   I     +     +      +          +          
Sbjct: 182 LGWKEYEMEVVRDRADNCIIVCSIENLDPMGVHTGDSITVAPAQTLTDKEYQILRNASLA 241

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 242 VLREIGVDTGGSNVQFSINPRDGRMVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 297



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 91/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 548 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 607

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 608 GGQTPLKLALDLEAHGVPIVGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARAEDEAL 667

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
                I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 668 ALADEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 727

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 728 DVDCICDGEAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVAELKRQTGAMAKA 784

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 785 LNVVGLMNVQFAIQQVPQADGSKQDIIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 840

Query: 291 W 291
            
Sbjct: 841 R 841


>gi|303256680|ref|ZP_07342694.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderiales
           bacterium 1_1_47]
 gi|302860171|gb|EFL83248.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderiales
           bacterium 1_1_47]
          Length = 452

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVESSGFVFIGPRPETIRLMGDKVSAKQAMIDAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                    +     +  P +IK   GG   G+ V+  + ++   +  +       + + 
Sbjct: 137 ALPDDPSEIIKIARSVGYPVIIKASGGGGGRGMKVVHTEAALINAVNTTKQEAKAAFGND 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L +   +   +   V+ D   +   +            K    +    +P +    I
Sbjct: 197 TVYLEKFLENPRHIEIQVLADNFRNAIWLGERDCSMQRRNQKVIEESPAIGIPRRAIEKI 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +          + IG RG    +FL+   + + +++E+N +
Sbjct: 257 GE----RCAEGCRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|270159117|ref|ZP_06187773.1| acetyl-CoA carboxylase [Legionella longbeachae D-4968]
 gi|289166048|ref|YP_003456186.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella longbeachae NSW150]
 gi|269987456|gb|EEZ93711.1| acetyl-CoA carboxylase [Legionella longbeachae D-4968]
 gi|288859221|emb|CBJ13155.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella longbeachae NSW150]
          Length = 446

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 95/321 (29%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGL------------------------VLAHLKP- 51
                 A ++ G +   +  DVD+ +                          +++  +  
Sbjct: 14  ALRILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+     I+E     +         L  DK+ +   + + GVP  
Sbjct: 74  DAV--AIHPGYGFLSENADFADIVEKSGFHFIGPRGETIRLMGDKVSAINAMRAAGVPCV 131

Query: 109 PSILVNRFTMDSQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         D ++      +  P +IK   GG   G+ V+  +  +   +  + S    
Sbjct: 132 PGSDGPLTDDDHKNLEIGRKVGYPVIIKAAGGGGGRGMRVVHSESHLLNAIALTRSEAKA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 AFNNPVVYMEKFLENPRHVEFQVLGDGKGNAIHLGERDCSMQRRHQKVVEEAPAPGISPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           +  ++      A Q +  RG    +FL+       +++E+N +              +  
Sbjct: 252 LRDKIGASVVKACQDLKYRGAGTFEFLY--QDGCFYFIEMNTR----------IQVEHPV 299

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   ++ AS
Sbjct: 300 TEMITGI---DLIKEQIKIAS 317


>gi|198411711|ref|XP_002126667.1| PREDICTED: similar to LOC100125119 protein, partial [Ciona
           intestinalis]
          Length = 628

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   ++  I+ +                       V  V++   PD    
Sbjct: 176 SGTQAIKALKEENIRIILINPNIATVQTSAGFADKVYFLPITPEYVEQVISSEHPDGILL 235

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G     + + +   +    + I +  ++ D+     K +     V    +
Sbjct: 236 SFGGQTALNCGIALNKKGVFDAYNVKVLGTPITSIEMTEDRKAFALKMMEIGEAVAPSDA 295

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +   D    +  P +++       LG       Q +   +  +    H  Q+ I++
Sbjct: 296 AYDMQQAEDIAERLGYPVLVRAAYALGGLGSGFANNQQQLVKLVTTAF--AHSTQVFIDK 353

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 354 SLKGW-KEVEYEVMRDAYGNCITVCNMENIDPLGIHTGESIVVAPSQTLTNHDYNRLRST 412

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 413 AISCIQHLGVVGECNIQYAINPESDEKYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 468

Query: 291 WM 292
            +
Sbjct: 469 KL 470


>gi|197111776|gb|ACH43043.1| D-alanine:D-lactate ligase VanB2 [Enterococcus faecium]
          Length = 202

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 2/136 (1%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D+AF VLHG  GEDG +Q +  L  IPY    I +SA  MDK  +  +  + G+ 
Sbjct: 21  ETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAACMDKSLAYILTKNAGIA 80

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           V    ++++        ++ P  +KP + GSS G+  +   + +   +   ++  +  ++
Sbjct: 81  VPEFQIIDKGDKPEAGALTYPVFVKPARSGSSFGVTKVNGTEELNAAI--EAAGQYDGKI 138

Query: 167 LIEQYVDGIELTCGVM 182
           LIEQ + G E+ C VM
Sbjct: 139 LIEQAISGCEVGCAVM 154


>gi|197287430|ref|YP_002153302.1| biotin carboxylase [Proteus mirabilis HI4320]
 gi|227358308|ref|ZP_03842649.1| biotin carboxylase [Proteus mirabilis ATCC 29906]
 gi|194684917|emb|CAR47087.1| biotin carboxylase [Proteus mirabilis HI4320]
 gi|227161644|gb|EEI46681.1| biotin carboxylase [Proteus mirabilis ATCC 29906]
          Length = 449

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKAVAVHSTADRDLKHVLLADETICIGPAASAKSYLNIPAIIAAAEIS 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  GAQAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                       ++    I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLGNDTAKNIEIAKRIGYPVIIKASGGGGGRGMRVVRSEKDLAQAISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   VM D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVMADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 PEIRKNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|50309273|ref|XP_454643.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49643778|emb|CAG99730.1| KLLA0E15357p [Kluyveromyces lactis]
          Length = 2228

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 458 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVILHERPDAIYV 517

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 518 TFGGQTALSVGIEMKDEFETLGVKVLGTPIDTVITTEDRELFANAMDEINEKCAKSAAAA 577

Query: 117 TMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T+         I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 578 TVAEALEAVKDIGFPVIVRAAYALGGLGSGFASNEKELVD--LCNVAFASSPQVLVERSM 635

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 636 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVIAPSQTLSDEDYNMLRTTAV 694

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 695 NVIRHLGVVGECNIQYALNPTSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 744


>gi|50552654|ref|XP_503737.1| YALI0E09493p [Yarrowia lipolytica]
 gi|49649606|emb|CAG79327.1| YALI0E09493p [Yarrowia lipolytica]
          Length = 2186

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 434 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKYERPDAIYV 493

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   E   +     G     +   + R     S   +    +      
Sbjct: 494 TFGGQTALNVGIEMKDEFEGLGVKVLGTPIDTVITTEDRELFARSMEEIGEKCAKSATAS 553

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           + +        I  P +++       LG      +  +    L + ++    Q+L+E+ +
Sbjct: 554 SKEEALAVVEEIGYPVIVRAAYALGGLGSGFADNEAELIE--LCNKAFAGSPQILVERSM 611

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 612 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 670

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 671 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 720


>gi|268537276|ref|XP_002633774.1| Hypothetical protein CBG03464 [Caenorhabditis briggsae]
          Length = 671

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 81/284 (28%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP---------------DLAFN----- 56
                +     G +   +  D DR+   V    K                D   N     
Sbjct: 31  AIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAYHIGPPLASESYLNMDKIINTALRS 90

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+           + +      A      K  SKQ++    VPV   
Sbjct: 91  GAQAIHPGYGFLSENAGFAERCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKG 150

Query: 111 ILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
                            I  P ++K + GG   G+ +   ++     L  + +     + 
Sbjct: 151 FHGEDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEEEFDEKLASARNEAKKSFG 210

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + + L+ +       +   V GD   +   +            +             +  
Sbjct: 211 NDEMLVEKFVERPRHVEVQVFGDHHGNYVHLWERDCSVQ----RRHQKIIEEAPAPNMTH 266

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++   A  A  A+G  G    +F+ DP   + +++E+N +
Sbjct: 267 ENRLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFYFMEMNTR 309


>gi|148359375|ref|YP_001250582.1| acyl CoA carboxylase subunit alpha [Legionella pneumophila str.
           Corby]
 gi|296107421|ref|YP_003619121.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           2300/99 Alcoy]
 gi|148281148|gb|ABQ55236.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           str. Corby]
 gi|295649322|gb|ADG25169.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           2300/99 Alcoy]
          Length = 654

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +  ++     L  +   +          ++ + L   
Sbjct: 148 AKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDTMIIERLVLNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          PA      + + +   A    ++I 
Sbjct: 208 HVEVQIMADNHGNVVHLFERDCSIQRRHQKIIEEAPAPNLSPMLRQRLAEAACEVARSIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D    K +++E+N +
Sbjct: 268 YRGAGTVEFLVDGED-KFYFMEMNTR 292


>gi|119505028|ref|ZP_01627104.1| probable biotin carboxylase/biotin carboxyl carrier protein [marine
           gamma proteobacterium HTCC2080]
 gi|119459010|gb|EAW40109.1| probable biotin carboxylase/biotin carboxyl carrier protein [marine
           gamma proteobacterium HTCC2080]
          Length = 662

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A  E   I +      A  +  DK R+K+ +   GVP  P        M
Sbjct: 84  YGFLSENSNFAAACEQANIVFIGPPNKAIEVMGDKARAKRAMLEAGVPCIPGYQDEAQDM 143

Query: 119 ----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               ++   I  P +IK   GG   G+ ++ +   +   +  + S         E  ++ 
Sbjct: 144 ETLLNAAENIGLPVMIKAAAGGGGRGMRLVTESPQLEDAIGLAQSEAQNAFGSSELIIER 203

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFL 233
             L    +           V         ++          P   +  ++ + +   A  
Sbjct: 204 AVLRPRHVEVQVFADQLGHVIHLGERDCSIQRRHQKVIEESPCPVMTPELRRAMGEAAVN 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +A+   G    +FL D    + ++LE+N +
Sbjct: 264 VARAVDYVGAGTVEFLVDE-DGRFYFLEMNTR 294


>gi|83859091|ref|ZP_00952612.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
 gi|83852538|gb|EAP90391.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Oceanicaulis
           alexandrii HTCC2633]
          Length = 661

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK + GG   G+ +++        L  +              ++       
Sbjct: 152 ADKVGYPLLIKAVAGGGGRGMRIVRSAGEFDEALASARREAKSAFGDDAVLIEKFVERGR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +        E             +          P+  +  ++ + +   A  A +A+G
Sbjct: 212 HVEIQVFADVEGNTIHLGERDCSAQRRRQKVIEEAPSPAVNPELRETMGADAVAAAKAVG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S   ++LE+N +
Sbjct: 272 YVGAGTVEFLLDE-SGDYYFLEMNTR 296


>gi|85074727|ref|XP_965731.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor [Neurospora crassa OR74A]
 gi|28927544|gb|EAA36495.1| methylcrotonoyl-CoA carboxylase alpha chain, mitochondrial
           precursor [Neurospora crassa OR74A]
 gi|38567316|emb|CAE76604.1| probable methylcrotonoyl-CoA carboxylase biotin carboxylase chain
           [Neurospora crassa]
          Length = 743

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 75/219 (34%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 125 ALHPGYGFLSENPAFAKACEEAGIVFVGPPAKAMTDMGDKARSKEIMNASGVPCVPGYHG 184

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +  +++        I  P ++K +KGG   G+ +++        L  + +          
Sbjct: 185 SEQSVEQLKAKAADIKYPVLLKSVKGGGGKGMRIVRNADEFEAQLKSARAEARASFGEGG 244

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + +   +              +              ++          PA +  D+ ++ 
Sbjct: 245 EVMLVEKYIVRPRHVEVQIFADRHGNCVALGERDCSVQRRHQKILEESPAPLLDDVTRKD 304

Query: 228 -QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A  A  A+   G    +F+ D  + + +++E+N +
Sbjct: 305 LWDKARKAALAVDYVGAGTVEFILDKDTNEFYFMEMNTR 343


>gi|317141542|ref|XP_003189380.1| hypothetical protein AOR_1_202164 [Aspergillus oryzae RIB40]
          Length = 348

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 81/296 (27%), Gaps = 31/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
           SG   A  L+  G  ++  D    V                H  +      + I+    +
Sbjct: 60  SGADIAYTLQSKGINITTPDPSPQVFK--------------HEGWCFSDTEEGIVSA--V 103

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
               + + A+ +  D    +Q            ++     +            K    G 
Sbjct: 104 NNGATHLWANTILFDSHPLQQSQKLTPYASDLYVVGQPPGLVENCDDKAFLNDKLRALGG 163

Query: 138 SL--GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAV 194
                  ++    ++   +    S+    + +  +   G             ++      
Sbjct: 164 YTLPRSWLVTDSHNLDEFVGSMKSFPVVGKPVRGRGSHGVKLCHSPAQLKQHIEALLGES 223

Query: 195 PKSDFYSYEL-KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
           P      Y   + +++      P +     Y +V        + IG     R D      
Sbjct: 224 PLIMVEEYLSGEEATITVMPPSPERSEHWTYGKVMEECQGVAKLIGATAPIRIDVRRFRE 283

Query: 254 SRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
             +    +IN++P MT           S+    AA  G+ +  LL  ++  AS  R
Sbjct: 284 GSEFALFDINMKPNMTGPGRPGREDQASLTAMAAAAIGWDYGTLLQKIL--ASAQR 337


>gi|168217456|ref|ZP_02643081.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           NCTC 8239]
 gi|182626216|ref|ZP_02953974.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           D str. JGS1721]
 gi|177908480|gb|EDT71013.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           D str. JGS1721]
 gi|182380418|gb|EDT77897.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           NCTC 8239]
          Length = 450

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K++    +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSDEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|332530693|ref|ZP_08406624.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
 gi|332039861|gb|EGI76256.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
          Length = 449

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKAVMVYSEADREAKYVKLAEEAVCIGPAPSRDSYLSMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRIMGDKVSAKQAMIKAGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             +  P +IK   GG   G+ V+  + ++   +  + +      
Sbjct: 134 SEGELPDDPVQMKRIAKSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAAAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L                ++          PA  IP  + 
Sbjct: 194 NNPAVYMEKFLENPRHVEIQILADKHKNAVYLGERDCSMQRRHQKIIEEAPAPGIPRKLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++V      A + IG RG    +FL+     + +++E+N +
Sbjct: 254 EKVGASCVNACKKIGYRGAGTFEFLY--QDGEFYFIEMNTR 292


>gi|324327847|gb|ADY23107.1| pyruvate carboxylase [Bacillus thuringiensis serovar finitimus
           YBT-020]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVGKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|312795108|ref|YP_004028030.1| biotin carboxylase [Burkholderia rhizoxinica HKI 454]
 gi|312166883|emb|CBW73886.1| Biotin carboxylase (EC 6.3.4.14) [Burkholderia rhizoxinica HKI 454]
          Length = 457

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 79  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRLMGDKVSAKQTMIKTGVPCVPGSDG 138

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     +  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 139 ALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 198

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L  +  +          ++          P   I   +   +
Sbjct: 199 QVYMEKFLENPRHIEIQVLADSFKSAVWLGERDCSMQRRHQKVIEEAPAPHIARRLIDRI 258

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 259 GDRCAEACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 294


>gi|308808958|ref|XP_003081789.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 1979

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 5/143 (3%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVM 182
           I  P +IK  +GG   GI  +   + +     Q  +   G  + I++  VD   L   ++
Sbjct: 125 IGFPVMIKASEGGGGKGIRKVNSMEDLRAGFAQVQAEVPGSPIFIQKLSVDSRHLEVQMV 184

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D       +            K        + P  +  ++ +     A    + +G  G
Sbjct: 185 ADKHGQAIALYGRDCSVQRRHQKIIEEGPITIAPRALCEELER----GAVRLAKKVGYCG 240

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++L++  + +  +LE+N +
Sbjct: 241 VGTVEYLYNIKTGEYSFLEVNPR 263


>gi|217961432|ref|YP_002340000.1| pyruvate carboxylase [Bacillus cereus AH187]
 gi|229140675|ref|ZP_04269223.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST26]
 gi|217065736|gb|ACJ79986.1| pyruvate carboxylase [Bacillus cereus AH187]
 gi|228642747|gb|EEK99030.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST26]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 75/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +               P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVGKFAEKYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|281354869|ref|ZP_06241363.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
 gi|281317749|gb|EFB01769.1| carbamoyl-phosphate synthase, large subunit [Victivallis vadensis
           ATCC BAA-548]
          Length = 1088

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 90/299 (30%), Gaps = 32/299 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L+  GF+V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGVQACKVLKREGFEVVLVNSNPATIMTDPEFADRTYIEPLTSDILHEIIRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
            L G    +  ++   + +   Y    I A+A ++ K   +Q+       +   +  +  
Sbjct: 89  TLGGQTALNLAMELEEKGILHRYQVELIGATADAISKAEDRQLFKQTMQGIGLDLPRSGS 148

Query: 117 TMDSQHLI-------SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                  +       S P +I+P       G  +    +     + +  + +   ++LIE
Sbjct: 149 AHSMAEALAVADAIGSWPLIIRPGFTLGGTGGGIAHTPEEFDAIVTRGLAASLNSEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +         I     +     +      +   +      +       
Sbjct: 209 ESLLGWKEFEMEVMRDKKGNAVIVCSIENLDPMGVHTGDSITVAPIQTLTDAEYQAMRDD 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G S   +  +P + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 SLKVMQSIGVETGGSNVQWAVNPENGRRIIIEMN--PRVSRSS--ALASKATGFPIAKI 323



 Score = 44.5 bits (103), Expect = 0.022,   Method: Composition-based stats.
 Identities = 42/289 (14%), Positives = 98/289 (33%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA----- 70
           AL  AG++V  +         D D S  L    L  +    V         +VQ      
Sbjct: 594 ALRKAGYEVVMVNSNPETVSTDYDSSDKLYFEPLTLEDVIAVYEREQCAGVIVQFGGQTP 653

Query: 71  -----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHL 123
                 LE        +       + D+   K++    G+    S         ++    
Sbjct: 654 LNLARQLEAAGANVIGTSPDDIDAAEDRDFFKRLSEKIGIRQPESGIAHNVAEAVEIADR 713

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P +++P       G++++ K+  +   +  +++   G  +LI+++++  +EL    +
Sbjct: 714 IGYPLLVRPSFVLGGRGMVIVYKEAYLRKYVEAAAAVAEGKPILIDRFLENAVELDVDCI 773

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +           +++ + P  +  +I ++V+  A    + +   G
Sbjct: 774 SDGRRTVIGAILEHVEPAGIHSG---DSASVIPPMTLSAEIQEKVRAYAREFARELHVCG 830

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +            +++ +E+N +   T     P ++   G     L   
Sbjct: 831 LMNMQLAV--KDGEIYMIEVNPRASRT----VPFVSKAIGVPLAGLAAR 873


>gi|116060255|emb|CAL56314.1| acetyl-CoA carboxylase (ISS) [Ostreococcus tauri]
          Length = 1983

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/143 (16%), Positives = 53/143 (37%), Gaps = 5/143 (3%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVM 182
           I  P +IK  +GG   GI  +   + +     Q  +   G  + I++  VD   L   ++
Sbjct: 125 IGFPVMIKASEGGGGKGIRKVNSMEDLRAGFAQVQAEVPGSPIFIQKLSVDSRHLEVQMV 184

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D       +            K        + P  +  ++ +     A    + +G  G
Sbjct: 185 ADKHGQAIALYGRDCSVQRRHQKIIEEGPITIAPRALCEELER----GAVRLAKKVGYCG 240

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++L++  + +  +LE+N +
Sbjct: 241 VGTVEYLYNIKTGEYSFLEVNPR 263


>gi|328776586|ref|XP_393888.3| PREDICTED: CAD protein isoform 1 [Apis mellifera]
          Length = 2256

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +PD    
Sbjct: 427 SGSQAIKALREECVQTLLINPNIATVQTSKGMADKVYFLPIIPEYVEQVIQSERPDGVLL 486

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     I +   +    + I +   + D+    + +      V    +
Sbjct: 487 TFGGQTALNCGVELEKNGIFKKYNVKILGTPIQSIIETEDRKIFAERIAEIDEKVAPSAA 546

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   ++ H +QL+I++
Sbjct: 547 VYSIQEALEAAEKLGYPVMARAAFSLGGLGSGFANSVKELRN--LAQQAFAHSNQLIIDK 604

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 605 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 663

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 664 AINVIRHFGIVGECNIQYALNPNTEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 719

Query: 291 WM 292
            +
Sbjct: 720 KL 721


>gi|289622025|emb|CBI51203.1| unnamed protein product [Sordaria macrospora]
          Length = 743

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 10/219 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+       E   I +      A     DK RSK+++++ GVP  P    
Sbjct: 125 ALHPGYGFLSENPAFAKACEDAGIVFVGPPPKAMHDMGDKARSKEIMNAAGVPCVPGYHG 184

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +++        I  P ++K +KGG   G+ +++        L  + +          
Sbjct: 185 PEQSVEQLKAKAAEIKYPVLLKSVKGGGGKGMRIVRTADEFEAQLKSARAEARASFGEGG 244

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSD--FYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           + +                  +              ++          PA +  D+ ++ 
Sbjct: 245 EVMLVERYVVRPRHVEVQVFADKHGNCVALGERDCSIQRRHQKILEESPAPLLDDVTRKD 304

Query: 228 -QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A  A  A+   G    +F+ D  + + +++E+N +
Sbjct: 305 LWDKARKAALAVDYVGAGTVEFILDKDTNEFYFMEMNTR 343


>gi|281357541|ref|ZP_06244029.1| acetyl-CoA carboxylase, biotin carboxylase [Victivallis vadensis
           ATCC BAA-548]
 gi|281316144|gb|EFB00170.1| acetyl-CoA carboxylase, biotin carboxylase [Victivallis vadensis
           ATCC BAA-548]
          Length = 455

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 42/287 (14%), Positives = 86/287 (29%), Gaps = 31/287 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLA-----FNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +S    L   +          + +H   G   E+           I +    
Sbjct: 47  EAVCIGPAQSSASYLLIDRILSVAAICDVDAIHPGYGFLSENAYFAEACRKHGITFIGPT 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A     DK  +++ +   GVP  P     +      +   H +  P +IK + GG   
Sbjct: 107 PEAMRALGDKAVARETMKKAGVPTTPGSDGIVGSEAEALKIAHELKYPVIIKAVAGGGGR 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +   D S+      + +           Y++   +    +    L      V     
Sbjct: 167 GMRIAHNDASLVQGYHAAKTEAENAFGNGALYMEKFLVNPRHIEVQILADNYGNVIHLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+      + + +   A  A +A G       +FLF       +
Sbjct: 227 RDCSVQRRNQKLIEESPSPALSPRLRERIGAAAVKAAKAAGYTSAGTIEFLFTE-DGNFY 285

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           ++E+N       P         EM      +  +L+   ++ A+  R
Sbjct: 286 FMEMNTRIQVEHP-------VTEM-----VTRVDLIREQIKVAAGER 320


>gi|228992683|ref|ZP_04152609.1| Pyruvate carboxylase [Bacillus pseudomycoides DSM 12442]
 gi|228767015|gb|EEM15652.1| Pyruvate carboxylase [Bacillus pseudomycoides DSM 12442]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 74/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     I       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLANIPVIPGSDGPINSLEEVEEFAKKYDYPIIIKASLGGGGRGMRIVRS 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 GDELKESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+   +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRHRICEAAVQLTKNVNYLNAGTVEFLV--KGDDFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|228998727|ref|ZP_04158314.1| Pyruvate carboxylase [Bacillus mycoides Rock3-17]
 gi|229006229|ref|ZP_04163915.1| Pyruvate carboxylase [Bacillus mycoides Rock1-4]
 gi|228755070|gb|EEM04429.1| Pyruvate carboxylase [Bacillus mycoides Rock1-4]
 gi|228761195|gb|EEM10154.1| Pyruvate carboxylase [Bacillus mycoides Rock3-17]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 74/244 (30%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFARRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     I       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLANIPVIPGSDGPINSLEEVEEFAKKYDYPIIIKASLGGGGRGMRIVRS 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
              +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 GDELKESYDRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+   +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRHRICEAAVQLTKNVNYLNAGTVEFLV--KGDDFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|224060759|ref|XP_002192539.1| PREDICTED: methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Taeniopygia guttata]
          Length = 903

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 19/187 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +   ++     L  +              ++      
Sbjct: 375 HAKRIGYPVMIKAVRGGGGKGMRIAYSEKEFLDQLESARREAKKSFNDDAMLIEKFVDNP 434

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  ++ + +   A  A +A+
Sbjct: 435 RHVEVQVFGDQHGNAVYLFERDCSVQRRHQKIIEEAPGPGISPEVRRRLGEAAVRAAKAV 494

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
              G    +F+ D      +++E+N       P         EM      +  +L+ W +
Sbjct: 495 NYVGAGTVEFIMDSQHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLVEWQL 541

Query: 294 EDASCLR 300
             A+  +
Sbjct: 542 RVAAGEK 548


>gi|218439974|ref|YP_002378303.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 7424]
 gi|218172702|gb|ACK71435.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7424]
          Length = 448

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +    VP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQITFIGPSPEAILAMGDKSTAKKTMQRANVPTVPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I   +        I  P +IK   GG   G+ +++ +  +P  L  +            
Sbjct: 138 LIDSEKQAKAIAADIGYPVLIKATAGGGGRGMRLVRNESELPSLLQAAQGEAGAAFGNSG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++          P+      + +++ 
Sbjct: 198 VYLEKFIECPRHIEFQILADQYGNVIHLGERDCSIQRRHQKLLEEAPSPFLTPQLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A ++I   G    +FL D      +++E+N +
Sbjct: 258 QAAIKAAKSINYVGAGTVEFLVDIHGN-FYFMEMNTR 293


>gi|86450105|gb|ABC96241.1| carbamoylphosphate synthetase [Deuteragonista sp. JKM-2006]
          Length = 1275

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + ++     V    +
Sbjct: 427 TFGGQTALNCGVELDRVGVFAKYNVKIMGTPIQSIIETEDRKIFSERIAEIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +   +L   +  H  QL+I++
Sbjct: 487 VFSVAEALAAAEILGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSSQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVVGECNIQYALNPDSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|152978365|ref|YP_001343994.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           succinogenes 130Z]
 gi|150840088|gb|ABR74059.1| phosphoribosylglycinamide formyltransferase 2 [Actinobacillus
           succinogenes 130Z]
          Length = 393

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/308 (14%), Positives = 87/308 (28%), Gaps = 38/308 (12%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A  L   G +V  +D                   +D S +  ++   +PD     +
Sbjct: 24  GKEVAIELMRFGVEVIAVDRYEQAPAQQVAHRAYTISMLDGSALRALVEKERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   + +L       +  + + ++         +       
Sbjct: 84  EAIATDTLVELEQEGFTVVPTAKATMLTMNREGIRRLAAEELALPT-SPYQFVDNFTDFQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK             +   G        V+G    
Sbjct: 143 SAVEKIGVPCVVKPIMSSSGHGQSVIKSLADAERA--WHYAQEGGRAGGGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++                 +          P  +     K+ + +A     A+
Sbjct: 201 DYEITLLTVRHI--GGTSFLAPIGHRQEDGDYRESWQPQAMSEAALKKARNVAEKITTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFRELL 289
           G RGI   +         V + E++ +P   GM       +S F   A    G     + 
Sbjct: 259 GGRGIFGVEMFVCGDD--VIFNEVSPRPHDTGMVTLISQELSEFALHARAILGLPIPTI- 315

Query: 290 LWMVEDAS 297
             ++  A+
Sbjct: 316 -NLISPAA 322


>gi|110635657|ref|YP_675865.1| pyruvate carboxylase [Mesorhizobium sp. BNC1]
 gi|110286641|gb|ABG64700.1| pyruvate carboxylase [Chelativorans sp. BNC1]
          Length = 1158

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 49/151 (32%), Gaps = 9/151 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P ++K   GG   G+ VI+ +  +  +++++       +   +  L +     
Sbjct: 155 MAAEIGFPVMLKASWGGGGRGMRVIRSEADLKREVMEAKREAKAAFGKDEVYLEKLVERA 214

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V+GD   +   +            K         L      ++           
Sbjct: 215 RHVEVQVLGDTHGNAVHLFERDCSIQRRNQKVVERAPAPYLDNAKRGELCGYAL----KI 270

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A    G    +FL D  +   +++E+N +
Sbjct: 271 AEATKYIGAGTVEFLMDADTSAFYFIEVNPR 301


>gi|294786515|ref|ZP_06751769.1| acetyl-CoA carboxylase alpha chain [Parascardovia denticolens
           F0305]
 gi|315226092|ref|ZP_07867880.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Parascardovia denticolens DSM 10105]
 gi|294485348|gb|EFG32982.1| acetyl-CoA carboxylase alpha chain [Parascardovia denticolens
           F0305]
 gi|315120224|gb|EFT83356.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Parascardovia denticolens DSM 10105]
          Length = 620

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P ++K   GG   GI + + +  +      +     G  L        +    
Sbjct: 146 FATEHGYPVMMKRTDGGGGRGITICRTEDEL-RAFYGAHDSLQGGDLSKYFIEKFVPHAR 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V      D        S       + +           +   +   ++  +     ++G
Sbjct: 205 HVETQCGRDKLGSFTVYSTRDCSVQRRNQKLIEEAPAPFLNDKVISRLETYSRRLFDSVG 264

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   +F+  P S  V++LE+N +
Sbjct: 265 YEGLGTCEFMVTPTSD-VYFLEVNPR 289


>gi|282165147|ref|YP_003357532.1| phosphoribosylglycinamide formyltransferase 2 [Methanocella
           paludicola SANAE]
 gi|282157461|dbj|BAI62549.1| phosphoribosylglycinamide formyltransferase 2 [Methanocella
           paludicola SANAE]
          Length = 427

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/262 (14%), Positives = 84/262 (32%), Gaps = 12/262 (4%)

Query: 31  FKVSQIDVD--RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   I++   R++  ++A  +PD     +     +             P   +   A  
Sbjct: 58  HRSYPINMKSERALMAIVARERPDAIIPEIEAINIDTLFKLEKEGYFVAPCAKAVWTAMH 117

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
              +++R     +                  +   I  P V KP++  S  G  ++K  +
Sbjct: 118 --RERLREAIASTGARTSKYEYATDLESFRKACDKIGFPCVSKPIQSSSGKGSYLLKSKK 175

Query: 149 SIPLDLLQSSSWNHGD-----QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +     ++            +  I+  V+  EL+   + +   D ++   P   +    
Sbjct: 176 DVEKAFKEAEKARGSAAKIIVEEFIDFDVEITELSVKYVNEKGRDESKFVRPLGHYQIEG 235

Query: 204 LKYSSLNSTHVL-PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             +SS +        K+   I K++   +      +G  G+   +   D  + KV+  E 
Sbjct: 236 DYHSSWHPWIEDGDEKMVKKIEKQIYDYSQRIMDNLGGYGLYAHEMFIDLKNGKVYANET 295

Query: 263 NVQPGMTPVSIFPEMAAYAGYS 284
             +P      +    +   GYS
Sbjct: 296 ACRP--HDTGLVTMASMPLGYS 315


>gi|33864872|ref|NP_896431.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. WH 8102]
 gi|33632395|emb|CAE06851.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Synechococcus
           sp. WH 8102]
          Length = 448

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +++    +          +    G+  L  +       
Sbjct: 149 AEQMGYPVMIKATAGGGGRGMRLVQSPDQLNNLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  D+ + +   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPDLRRRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|228476268|ref|ZP_04060970.1| pyruvate carboxylase [Staphylococcus hominis SK119]
 gi|228269671|gb|EEK11173.1| pyruvate carboxylase [Staphylococcus hominis SK119]
          Length = 1149

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIEVAKRANVDAIHPG-YGFLSENEEFARRCNEEGITFIGPHLDHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P         D           P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKANLPVIPGTDGPIENFDAAKAFAKEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAQKSFGNSEVYIERYIDNPKHIEVQVIGDEYGNIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+   P ++ + + + A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLPDELRERICQSALQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|51473797|ref|YP_067554.1| PCCase. [Rickettsia typhi str. Wilmington]
 gi|51460109|gb|AAU04072.1| PCCase [Rickettsia typhi str. Wilmington]
          Length = 665

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 26/205 (12%), Positives = 67/205 (32%), Gaps = 29/205 (14%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD-----LLQSSSWN 161
              +I   +  +D    I  P ++K   GG   G+ V+     +        L  ++S++
Sbjct: 138 YMGTIKDVKQAIDIAKEIGFPVIVKATAGGGGRGMRVVNNPAEMANAFESAKLEAANSFS 197

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
                + +       +   ++ D   +   +   +        ++          + I  
Sbjct: 198 DDRLFIEKLIQTPRHIEIQLIADQYGNSVCLGERECSIQ----RHHQKVIEEAPSSFITE 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           +I +E+ R      Q +G       +F+ D      ++LE+N +              + 
Sbjct: 254 NIRQEMYRQVISLSQKVGYYSAGTVEFIVDSNKN-FYFLEMNTR----------LQVEHP 302

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +++  M++ A+  +
Sbjct: 303 VTELITGI---DIVEEMIKIAAGEK 324


>gi|330999320|ref|ZP_08323037.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Parasutterella
           excrementihominis YIT 11859]
 gi|329575178|gb|EGG56729.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Parasutterella
           excrementihominis YIT 11859]
          Length = 452

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 73/222 (32%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVESSGFVFIGPRPETIRLMGDKVSAKQAMIDAGVPCVPGSGG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                    +     +  P +IK   GG   G+ V+  + ++   +  +       + + 
Sbjct: 137 ALPDDPSEIIKIARSVGYPVIIKASGGGGGRGMKVVHTEAALINAVNTTKQEAKAAFGND 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L +   +   +   V+ D   +   +            K    +    +P +    I
Sbjct: 197 TVYLEKFLENPRHIEIQVLADNFRNAIWLGERDCSMQRRNQKVIEESPAIGIPRRAIEKI 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +          + IG RG    +FL+   + + +++E+N +
Sbjct: 257 GE----RCAEGCRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319787245|ref|YP_004146720.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudoxanthomonas suwonensis 11-1]
 gi|317465757|gb|ADV27489.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudoxanthomonas suwonensis 11-1]
          Length = 674

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 42/146 (28%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P ++K   GG   G+ V+   +     L                 ++    +  
Sbjct: 153 ARRTGFPLMVKAAHGGGGKGMRVVHAPEDFAAALESCQREARNAFGRDRVLLERYVRSPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       +   V   +      +          P+      +   +   A  A +AIG
Sbjct: 213 HIEIQVFADSHGQVIHLNERECSAQRRYQKVLEEAPSPFLTPQLRAAMGEAAVAAARAIG 272

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ DP     +++EIN +
Sbjct: 273 YVNAGTVEFIVDP-DGNFYFMEINTR 297


>gi|322513756|ref|ZP_08066844.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus ureae
           ATCC 25976]
 gi|322120429|gb|EFX92352.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus ureae
           ATCC 25976]
          Length = 447

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNNMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|321313892|ref|YP_004206179.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           BSn5]
 gi|320020166|gb|ADV95152.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           BSn5]
          Length = 384

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 72/237 (30%), Gaps = 10/237 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + V  +D    +  ++   KPDL    +     ++ L         IP   +  L     
Sbjct: 49  YVVDMLDP-EQIRTIIEKEKPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDRE 107

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             +  + + +                 + +   I  P V+KPL   S  G  + + +  +
Sbjct: 108 GIRRLAAETLGLAT-AGYEFANTYAEFIQAAAQIGFPCVVKPLMSSSGKGQSICRSEADL 166

Query: 151 PLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +          +I +     E    ++   +++ T    P         +    
Sbjct: 167 ESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHV-----QKDGD 221

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P  +     +E + +A      +G  G+   +        +V++ E++ +P
Sbjct: 222 YIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFL--AKDRVYFSEVSPRP 276


>gi|291541504|emb|CBL14614.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ruminococcus bromii L2-63]
          Length = 452

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 5/211 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    ++ E   I +         L  DK  +++ + + GVPV P   +     
Sbjct: 82  YGLLSENAKFVSLCEQCNINFIGPSSEMIKLLGDKDNARKTMRAAGVPVTPGCDIVENVE 141

Query: 119 D---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P +IK   GG   GI  +   +      L +SS           Y++  
Sbjct: 142 QAKEEAEKIGFPLLIKARSGGGGKGIRRVDSIEQFEEAFLSASSEAQSAFGDGACYIEKF 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLA 234
                 +    L      +         ++  +       P+    +  ++     A  A
Sbjct: 202 IHPVKHIEMQLLCDKYGNIVCLGERECSVQRKNQKMIEESPSPALDEKTRKEMMIAAVKA 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A+        +FL D +    +++E+N +
Sbjct: 262 AKAVNYVNAGTVEFLLD-MDNNFYFMEMNTR 291


>gi|261417317|ref|YP_003251000.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|261373773|gb|ACX76518.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
 gi|302326908|gb|ADL26109.1| carbamoyl-phosphate synthase, large subunit [Fibrobacter
           succinogenes subsp. succinogenes S85]
          Length = 1087

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 31/299 (10%), Positives = 92/299 (30%), Gaps = 32/299 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   G++V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGVQACKVLRREGYEVVLVNSNPATIMTDPEMADRTYIEPLSVDILHEIIRRERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  ++      L+  ++    +   +   + D+   K+ +   G+ +  S  
Sbjct: 89  TLGGQTALNLAMELNERGILDRYQVELIGAKAESIQRAEDRHLFKEAMLKIGLDLPRSGS 148

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  +  +    +    P +I+P       G  +   ++     + +    +  +++LIE
Sbjct: 149 AHSMSEATAIAHTIGSWPLIIRPGFTLGGTGGGIAHNEEEFETIVNRGLDASLNNEVLIE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +         I     +     +      +   + +            
Sbjct: 209 ESLLGWKEFEMEVMRDKKGNAVIVCSIENLDPMGVHTGDSITVAPIQSLDDRAYQAMRDD 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G S   +  +P + +   +E+N  P ++  S     +   G+   ++
Sbjct: 269 SLKVMEAIGVETGGSNVQWAIEPKTGRRIIIEMN--PRVSRSS--ALASKATGFPIAKI 323



 Score = 38.3 bits (87), Expect = 1.4,   Method: Composition-based stats.
 Identities = 48/317 (15%), Positives = 107/317 (33%), Gaps = 47/317 (14%)

Query: 1   MAVLMGGISSEREVSLSSGKAC-------ASA--LEDAGFKVSQI---------DVDRSV 42
           + VL GG +         G+          +A  L   GF+V  +         D D S 
Sbjct: 571 IMVLGGGPN-------RIGQGIEFDYCCCHAAFTLRKHGFEVIMVNSNPETVSTDYDTSD 623

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQ----------AILELLEIPYTHSGILASALSMD 92
            L    L  +    +         +VQ            L+        +      L+ D
Sbjct: 624 KLYFEPLTLEDVMGIYEREKCAGVIVQFGGQTPLNLAMRLKKAGANVIGTSPEDIDLAED 683

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           +   KQ+V+  G+    S + +           I  P +++P       G++++ K++ +
Sbjct: 684 RDFFKQLVTKIGIKQAESGIAHNVEEALAIVDKIGYPVLVRPSFVLGGRGMVIVYKEKYL 743

Query: 151 PLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              + ++++   G  +LI+++  D  EL    + D    V    +   +           
Sbjct: 744 RKFVEEAAAIGEGKPILIDRFLEDATELDVDCISDGKHTVIGAIMEHVEPAGIHSG---D 800

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           +++ + P  +  +I  +V+  A    + +   G+            +++ +E+N +   T
Sbjct: 801 SASVIPPMTLSKEIQDKVREFAKEFAKELHVVGLMNMQLAV--KDGELYMIEVNPRASRT 858

Query: 270 PVSIFPEMAAYAGYSFR 286
                P ++   G    
Sbjct: 859 ----VPFVSKSIGVPLA 871


>gi|238837063|gb|ACR61637.1| heteromeric acetyl-CoA biotin carboxylase [Jatropha curcas]
          Length = 536

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 78/220 (35%), Gaps = 14/220 (6%)

Query: 55  FNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS---- 110
           F+  +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P     
Sbjct: 149 FHPGYGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGL 208

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQ 165
           +      +   H I  P +IK   GG   G+ + K+       L Q+ S     + +   
Sbjct: 209 LQNTEEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGV 268

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L +   +   +   V+ D   +V               + +           +  ++ K
Sbjct: 269 YLEKYIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRK 324

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 325 AMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|218931764|gb|ACL12520.1| CAD [Phytomyza sp. OL-2008]
          Length = 1276

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     +     +    + I +   + D+      ++     V    +
Sbjct: 428 TFGGQTALNCGVDLERAGVFSKYNVKILGTPISSIIETEDRKIFANRINEIGEHVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P + +       LG         + L+ L   +  H  QL+I++
Sbjct: 488 VYSVEEALQAANRLGYPVMARAAFSLGGLGSGFANN--ELELNALARQALAHSSQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVIGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|327313619|ref|YP_004329056.1| carbamoyl-phosphate synthase large subunit [Prevotella denticola
           F0289]
 gi|326945649|gb|AEA21534.1| carbamoyl-phosphate synthase, large subunit [Prevotella denticola
           F0289]
          Length = 1074

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +   + +L    +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELDKKGVLRKYNVKVLGTPVRAIMDTEDRELFVERLDEIDVRTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CEDIQQARLAAKTLGYPVIVRAAYALGGLGSGFADNEEELNT--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|325854315|ref|ZP_08171514.1| carbamoyl-phosphate synthase, large subunit [Prevotella denticola
           CRIS 18C-A]
 gi|325484109|gb|EGC87043.1| carbamoyl-phosphate synthase, large subunit [Prevotella denticola
           CRIS 18C-A]
          Length = 1074

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +   + +L    +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELDKKGVLRKYNVKVLGTPVRAIMDTEDRELFVERLDEIDVRTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CEDIQQARLAAKTLGYPVIVRAAYALGGLGSGFADNEEELNT--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|307262366|ref|ZP_07544012.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
 gi|306867914|gb|EFM99744.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 12 str.
           1096]
          Length = 447

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|306836603|ref|ZP_07469570.1| acetyl-CoA carboxylase subunit A [Corynebacterium accolens ATCC
           49726]
 gi|304567525|gb|EFM43123.1| acetyl-CoA carboxylase subunit A [Corynebacterium accolens ATCC
           49726]
          Length = 458

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 32/279 (11%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNV---- 57
                 A ++ G K           S+ + LA                 P+L  +     
Sbjct: 17  ALRIIRACKELGIKSILTYSEGDKDSLPVKLADQAVCIGPANVSKSYNSPELVISAAMAY 76

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E      ++E  EI +         L  DK+ +K++  S GVP  P 
Sbjct: 77  KADAIHPGYGFLSEKPDFVRMVEEEEIGFVGPSAEHIGLMGDKIAAKRIAKSAGVPTVPG 136

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      ++  H    P +IK   GG   G+ V++ + ++  DL +  +       
Sbjct: 137 SDGVVTEFDEALEVAHNTGFPLLIKAAAGGGGRGMRVVESEDTLEKDLNEIMNEAESAFN 196

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    L   E AV   +      + +           +  ++ +E
Sbjct: 197 DPSVYIERFLTDIRHIEIQVLADGENAVALGERDCTSQRRNQKLIEEGPSPVLTDELRQE 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +Q  A    + +  +     +F+FD    K +++E+N +
Sbjct: 257 MQEAAINLCKEVKYKNAGTIEFVFDNTEDKFYFIEMNTR 295


>gi|227503156|ref|ZP_03933205.1| acetyl-CoA carboxylase [Corynebacterium accolens ATCC 49725]
 gi|227076217|gb|EEI14180.1| acetyl-CoA carboxylase [Corynebacterium accolens ATCC 49725]
          Length = 458

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 47/279 (16%), Positives = 94/279 (33%), Gaps = 32/279 (11%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNV---- 57
                 A ++ G K           S+ + LA                 P+L  +     
Sbjct: 17  ALRIIRACKELGIKSILTYSEGDKDSLPVKLADQAVCIGPANVSKSYNSPELVISAAMAY 76

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E      ++E  EI +         L  DK+ +K++  S GVP  P 
Sbjct: 77  KADAIHPGYGFLSEKPDFVRMVEEEEIGFVGPSAEHIGLMGDKIAAKRIAKSAGVPTVPG 136

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      ++  H    P +IK   GG   G+ V++ + ++  DL +  +       
Sbjct: 137 SDGVVTEFDEALEVAHNTGFPLLIKAAAGGGGRGMRVVESEDTLEKDLNEIMNEAESAFN 196

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    L   E AV   +      + +           +  ++ +E
Sbjct: 197 DPSVYIERFLTDIRHIEIQVLADGENAVALGERDCTSQRRNQKLIEEGPSPVLTDELRQE 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +Q  A    + +  +     +F+FD    K +++E+N +
Sbjct: 257 MQEAAINLCKEVKYKNAGTIEFVFDNTEDKFYFIEMNTR 295


>gi|209551410|ref|YP_002283327.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209537166|gb|ACI57101.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1154

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 155 MAKEIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQVLGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYVGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|209551980|ref|YP_002283896.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
 gi|209539573|gb|ACI59504.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM2304]
          Length = 1165

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 165 MAKEIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERA 224

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 225 RHVESQVLGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 284

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 285 NYVGAGTVEYLMDADTGKFYFIEVNPR 311


>gi|193204318|ref|NP_495838.2| PYRimidine biosynthesis family member (pyr-1) [Caenorhabditis
           elegans]
 gi|161352981|emb|CAA91059.2| C. elegans protein D2085.1, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 2198

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +P     
Sbjct: 412 SGAQALKALREEGIRTVLINPNIATVQTSKGFADFTYFLPITKEYVTDVIKKERPTGILC 471

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G        D     I E  ++    + I     + D+     +       V    +
Sbjct: 472 TFGGQTALNCAIDLYKDGIFEQYDVQVLGTQINTIMKTEDRDLFNQEISAIGEKVAPSKA 531

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P +++       LG       + +     Q+    H +Q+L+++
Sbjct: 532 ATTMEGAIEAAEELGYPVLVRAAYALGGLGSGFADNREELIAIAQQAL--AHSNQVLVDK 589

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 590 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESVVVAPSQTLSDREYNALRTC 648

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  DP S   + +E+N +  ++  S     +   GY    +  
Sbjct: 649 AIKVIRHLGIIGECNIQYALDPYSLTYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 704

Query: 291 WM 292
            +
Sbjct: 705 KL 706


>gi|119946462|ref|YP_944142.1| carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
 gi|119865066|gb|ABM04543.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Psychromonas
            ingrahamii 37]
          Length = 1520

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 41/234 (17%), Positives = 88/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V A+ + D     + G   E      +     I +    + +     +K  + +  
Sbjct: 1012 SVLKVAAYEEVDALHPGI-GFLSESPHFADLCVGHNINFVGPSMNSMLTMGNKSNAIKTA 1070

Query: 101  SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               GVPV P            +D  + +  P ++K + GG   GI+VI+K + +     Q
Sbjct: 1071 QDNGVPVVPGSHGILTGAEQALDIANAMGYPVLLKAVNGGGGKGILVIEKAEDMFAGFSQ 1130

Query: 157  -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  S++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1131 VSAEARSAFGNGDLYLEKYITSLRHIEVQLLRDKHCNTKVLGIRDCSVQRNNQKVVEESE 1190

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LPA + +++ K           A+   G    +F++D     ++++E+N +
Sbjct: 1191 STMLPAHLEVEVLKH----TAALADAVDYMGAGTVEFIYDLDQDSIYFMEMNTR 1240


>gi|86137320|ref|ZP_01055897.1| acetyl-CoA carboxylase [Roseobacter sp. MED193]
 gi|85825655|gb|EAQ45853.1| acetyl-CoA carboxylase [Roseobacter sp. MED193]
          Length = 449

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 48/150 (32%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V      I +    + S     + + +  + +      
Sbjct: 148 AADMGYPVIIKATAGGGGRGMKVATSAADIDVAFSTARSEAKAAFGNDEVYMEKYLQKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +A           +             I  +    + ++   A 
Sbjct: 208 HIEVQVFGDGKGNGVHLAERDCSLQ----RRHQKVFEEAPGPCITPEERARIGKICADAV 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A+   G    +FL+     + +++E+N +
Sbjct: 264 GAMSYSGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|229075704|ref|ZP_04208686.1| Pyruvate carboxylase [Bacillus cereus Rock4-18]
 gi|228707480|gb|EEL59671.1| Pyruvate carboxylase [Bacillus cereus Rock4-18]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     I       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLFERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229098417|ref|ZP_04229362.1| Pyruvate carboxylase [Bacillus cereus Rock3-29]
 gi|229117443|ref|ZP_04246819.1| Pyruvate carboxylase [Bacillus cereus Rock1-3]
 gi|228666053|gb|EEL21519.1| Pyruvate carboxylase [Bacillus cereus Rock1-3]
 gi|228685034|gb|EEL38967.1| Pyruvate carboxylase [Bacillus cereus Rock3-29]
          Length = 1148

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     I       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLFERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|218931755|gb|ACL12516.1| CAD [Apiochaeta aterrima]
          Length = 1264

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 356 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKCYFLPLTPNYVEQVIKAERPNGVLL 415

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +           +    + I +   + D+      ++     V    +
Sbjct: 416 TFGGQTALNCGVELERAGTFAKYNVKILGTPIESIIETEDRKIFADRINEIGECVAPSEA 475

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG      ++ +    L + +  H  QL+I++
Sbjct: 476 VYSVPEALAAATRLGYPVMARAAFSLGGLGSGFANNEKEL--ATLANQALAHSSQLIIDK 533

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 534 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNREYNMLRTT 592

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 593 ALKVIRHFGVIGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 648

Query: 291 WM 292
            +
Sbjct: 649 KL 650


>gi|116071382|ref|ZP_01468651.1| acetyl-CoA carboxylase [Synechococcus sp. BL107]
 gi|116066787|gb|EAU72544.1| acetyl-CoA carboxylase [Synechococcus sp. BL107]
          Length = 448

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AAEMGYPVMIKATAGGGGRGMRLVPSPDQLESLYKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  ++ +++   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPELRRKMGEAAIAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRTGG-FYFMEMNTR 293


>gi|29347325|ref|NP_810828.1| pyruvate carboxylase subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253570427|ref|ZP_04847835.1| pyruvate carboxylase subunit A [Bacteroides sp. 1_1_6]
 gi|298385179|ref|ZP_06994738.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
 gi|29339224|gb|AAO77022.1| pyruvate carboxylase subunit A [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251839376|gb|EES67459.1| pyruvate carboxylase subunit A [Bacteroides sp. 1_1_6]
 gi|298262323|gb|EFI05188.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           1_1_14]
          Length = 503

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 47  EAYCVGPAASKESYLNIEKIIEVAKECHADAIHPGYGFLSENATFARRCQEENIIFIGPD 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 107 PETMEAMGDKISARIKMIEAGVPVVPGTQENLKSVEEAVELCNKIGYPVMLKASMGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 167 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 226

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +  ++ K++   A  A +A+   G    +FL D      +
Sbjct: 227 RECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|15669414|ref|NP_248224.1| pyruvate carboxylase subunit A [Methanocaldococcus jannaschii DSM
           2661]
 gi|2493313|sp|Q58626|PYCA_METJA RecName: Full=Pyruvate carboxylase subunit A; AltName: Full=Pyruvic
           carboxylase A
 gi|1591860|gb|AAB99232.1| biotin carboxylase (accC) [Methanocaldococcus jannaschii DSM 2661]
          Length = 501

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 35/318 (11%), Positives = 80/318 (25%), Gaps = 54/318 (16%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNVLHGN 61
                 A  + G K   +      RS+   LA                  D   NV    
Sbjct: 14  AIRIIRACWELGIKTVAVYSEADKRSLHATLADEAYCIGPAPAAKSYLNIDAILNVAEKA 73

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------------ 109
             +              +  +   A    +             +                
Sbjct: 74  KVDAIHPGYGFLAENAEFARAVKKAGFEFIGPNPDAIEAMGSKINAKKIMKKAGVPLIPG 133

Query: 110 ---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              +I      ++    I  P V+K   GG  +G+ V    + +   +  + +       
Sbjct: 134 SEGAIEDIDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKEVIESARNIAKSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      +         ++          P   +  ++ +
Sbjct: 194 DPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
            +   A  A +AI        +FL+   +   ++LE+N +              +     
Sbjct: 254 RMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNTR----------IQVEHTVTEQ 301

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+  M++ A+
Sbjct: 302 VTGI---DLVKAMIKIAA 316


>gi|333028367|ref|ZP_08456431.1| putative carbamoyl phosphate synthase large subunit [Streptomyces
           sp. Tu6071]
 gi|332748219|gb|EGJ78660.1| putative carbamoyl phosphate synthase large subunit [Streptomyces
           sp. Tu6071]
          Length = 1061

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 34/272 (12%), Positives = 80/272 (29%), Gaps = 17/272 (6%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASA 88
           V  I     V  ++A  +PD+    L G    +  +       LE   +    + + A  
Sbjct: 23  VEPITP-EYVEKIIAKERPDVLLPTLGGQTALNTAISLHDAGTLEKYGVELIGANVEAIN 81

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI--------SPPYVIKPLKGGSSLG 140
              D+   K VV      +            S   +          P V++P       G
Sbjct: 82  KGEDRDLFKGVVEEVRKKIGHGESARSVICHSMDDVLAGVDTLGGYPVVVRPSFTMGGAG 141

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
                 ++ +     Q  + +   ++L+E+ + G +     +     D   +     +F 
Sbjct: 142 SGFAHDEEELRRIAGQGLTLSPTTEVLLEESILGWKEYELELMRDRNDNVVVVCSIENFD 201

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
              +      +          +  +       +  +     G     F  +P   ++  +
Sbjct: 202 PMGVHTGDSITVAPAMTLTDREYQRLRDIGIAIIREVGVDTGGCNIQFAVNPEDGRIIVI 261

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           E+N  P ++  S     +   G+   ++   +
Sbjct: 262 EMN--PRVSRSS--ALASKATGFPIAKIAAKL 289


>gi|298480184|ref|ZP_06998382.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D22]
 gi|298273465|gb|EFI15028.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D22]
          Length = 1073

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELAL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSETDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|312195548|ref|YP_004015609.1| carbamoyl-phosphate synthase, large subunit [Frankia sp. EuI1c]
 gi|311226884|gb|ADP79739.1| carbamoyl-phosphate synthase, large subunit [Frankia sp. EuI1c]
          Length = 1107

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L   G +V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGTQACRVLRAEGLRVVLVNSNPATIMTDPELADATYVEPITPEIVTKIIEKERPDALLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +  V       L+   +    + I A     D+   K++V++ G     S +
Sbjct: 89  TMGGQTALNTAVALYDAGVLDRFGVRLIGANIDAIRRGEDRQLFKEIVATVGGETARSAI 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                         S P V++P       G         +        + +   Q+L+E+
Sbjct: 149 CVTVEECLAAGEEFSYPVVVRPSYTLGGAGSGFAHDPDELARMASDGLAASPSTQVLVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +  K     
Sbjct: 209 SVLGWKEFELELMRDRADNVVVVCSIENVDPMGVHTGDSITVAPALTLTDREYQKLRDLA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVMREVGVDAGGCNIQFAVDPRTGRIVVIEMN--PRVSRSS--ALASKATGFPIAKISA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|190151224|ref|YP_001969749.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|303252750|ref|ZP_07338911.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|307248940|ref|ZP_07530950.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|307264573|ref|ZP_07546156.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
 gi|189916355|gb|ACE62607.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
 gi|302648400|gb|EFL78595.1| biotin carboxylase subunit of acetyl CoA carboxylase
           [Actinobacillus pleuropneumoniae serovar 2 str. 4226]
 gi|306854551|gb|EFM86744.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 2 str.
           S1536]
 gi|306870102|gb|EFN01863.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 13 str.
           N273]
          Length = 447

 Score = 49.9 bits (117), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L  T             ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|330959137|gb|EGH59397.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. maculicola str. ES4326]
          Length = 393

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVVNMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RTVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K +  +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSNDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPA 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALVESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|328770277|gb|EGF80319.1| hypothetical protein BATDEDRAFT_29998 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 2141

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 92/294 (31%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H KPD  + 
Sbjct: 400 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTPEFVRKVIKHEKPDGIYC 459

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G    +  V+   E   +     G     + M + R     +   +        S  
Sbjct: 460 TFGGQTALNIGVKLKDEFASLGVQVLGTPIQTIEMTEDRELFGNALAEIGEKCAQSSSAT 519

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +I+       LG    +  + +    L   ++    Q+L+E+ +
Sbjct: 520 TVEEAIAAANSIGYPLIIRAAYALGGLGSGFAENQEQLQE--LCIKAFATSPQILVEKSM 577

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 + V   + +     ++  +        +  + Y  ++R A 
Sbjct: 578 KGW-KEIEYEVVRDAYDNCVTVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYMMLRRTAV 636

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +PLS++   +E+N +  ++  S     +   GY   
Sbjct: 637 NVIRHLGVIGECNIQYALNPLSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 686


>gi|307246800|ref|ZP_07528866.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|307255783|ref|ZP_07537585.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|307260235|ref|ZP_07541943.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
 gi|306852271|gb|EFM84510.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 1 str.
           4074]
 gi|306861246|gb|EFM93238.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 9 str.
           CVJ13261]
 gi|306865682|gb|EFM97562.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 11 str.
           56153]
          Length = 447

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPVKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|218526234|gb|ACK86524.1| carbamoyl-phosphate synthase [Apochrysa lutea]
          Length = 717

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       +  V+   +P     
Sbjct: 126 SGSQAIKALREENIQTILINPNIATVQTSKGLADKVYYLPLLPEYIEQVIKSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G      G       + +        + I +   + D+    + +S     V    +
Sbjct: 186 TFGGQTALNCGVQLEKANVFKKYGCRILGTPIESIIETEDRKMFAEKISQINERVAPSEA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  +I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 246 VYSIEEALNAADIIGYPVMARAAFSLGGLGSGFAHNKEQLRS--LATQALAHSNQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|224535699|ref|ZP_03676238.1| hypothetical protein BACCELL_00563 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522679|gb|EEF91784.1| hypothetical protein BACCELL_00563 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 503

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++       + D      +G   E+       +   I +            DK+ +++ 
Sbjct: 64  ENIIRAARQHEADAIHPG-YGFLSENADFARRCKEEGIIFIGPSAETMEAMGDKISARKH 122

Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + + GVPV P            +   + I  P ++K   GG   G+ +I  +  +     
Sbjct: 123 MIAAGVPVVPGTEQPLQSAGEAVMICNKIGYPVMLKASMGGGGKGMRLIHSEDEVVEAYN 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S +         Y++        +    L      V         ++  +       
Sbjct: 183 TARSESMSAFGDDTVYLEKFVEEPHHIEFQVLGDNHGNVIHLFDRECSVQRRNQKIVEES 242

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     ++ +E+   A  A +A+   G    +FL D   R  ++LE+N +
Sbjct: 243 PSPFLTPELRREMGEKAVAAAKAVNYSGAGTIEFLVDKH-RHFYFLEMNTR 292


>gi|84514463|ref|ZP_01001827.1| carbamoyl-phosphate synthase large subunit [Loktanella
           vestfoldensis SKA53]
 gi|84511514|gb|EAQ07967.1| carbamoyl-phosphate synthase large subunit [Loktanella
           vestfoldensis SKA53]
          Length = 1110

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 95/315 (30%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ + +                     V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEIVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTSLALADMGVLEKFGVEMIGAKREAIEMAEDRKLFREAMDRLGIENPKATI 148

Query: 113 VN---------------RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                +  +D+   +  P +I+P       G  V    +         
Sbjct: 149 ITAPKGENGKRDIKAGLQLAIDAIEYVGLPAIIRPAFTLGGTGGGVAYNREQYEHFCRTG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MEASPVGQILVDESLLGWKEFEMEVVRDKADNAIIVCAIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 104/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDQGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 630 RLYFEPLTFEHVMEILRVEQENGVLHGVIVQFGGQTPLKLANALHEAGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+V   G+    +     +    +    I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQQLVQKLGLKQPVNGIAHSDAEAFEIAKTIGFPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   + ++   +    +L++ Y+ G +E+    + D         +   +       
Sbjct: 750 QAQLERYISEAVVVSGDSPVLLDSYLSGAVEVDVDCLSDGENTHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   +  E++       +A+   G+    F     + +V+ +E+N +
Sbjct: 807 HSGDSACSLPPYSLSAAMIAEIRSQTEKLARALHVVGLMNIQFAV--KNEEVYLIEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|330834160|ref|YP_004408888.1| carbamoyl phosphate synthase large subunit [Metallosphaera cuprina
           Ar-4]
 gi|329566299|gb|AEB94404.1| carbamoyl phosphate synthase large subunit [Metallosphaera cuprina
           Ar-4]
          Length = 1046

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 104/319 (32%), Gaps = 42/319 (13%)

Query: 18  SGKACASALEDAGFKVSQID------------VDR---------SVGLVLAHLKPDLAFN 56
           SG     A  + G +   ++             D+         +V  V+   +PD    
Sbjct: 26  SGSQSLKAYREEGIETVLVNSNVATVQTSYKMTDKLYMVPVTWWAVEKVIEQERPDAIAI 85

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +               +++  T    +  ALS +K R   +     VP   S
Sbjct: 86  GFGGQTALNVGVDLFKRGILQRYDIKVLGTPIEGIERALSREKFRETMIDVKIPVPPSFS 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
              +   +     I  P +++        G  V    +S+   + ++ S ++  ++L+E+
Sbjct: 146 ARSSDEAIKKAEEIGYPVMVRVSFNLGGRGSTVAWDRESLRKSIDRALSQSYIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++                    +   +       ++  +        +    ++E++ L
Sbjct: 206 YLNHW-KELEYEVMRDSKGNSAVIACIENLDPMGVHTGESIVITPCQTLDNKEFQEMRSL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEM---AAY 280
           +    ++I   G     F  DP S   + +E N  P M+  S        +P     A  
Sbjct: 265 SMKVAESINLVGECNVQFALDPYSYTNYVIETN--PRMSRSSALASKATGYPLAYVSAKL 322

Query: 281 A-GYSFRELLLWMVEDASC 298
           + GY+  E+L   V  A+C
Sbjct: 323 SLGYTLEEILNK-VSGATC 340



 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 90/273 (32%), Gaps = 17/273 (6%)

Query: 24  SALEDAGFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
             +    F     ++ +  +  ++             G  G +   +   E +++  +  
Sbjct: 604 DTIRKLYFD----EITKERILDIIKKENYTYVATFAGGQIGNNLAKRLEEEGIKLLGSSG 659

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGII 142
             +  A   +K  +         P   S    +        I  P +++P    S   + 
Sbjct: 660 RSVDLAEDREKFSALLDRLGVKQPAWISAKDPQEVRKFISEIGFPVLVRPSYVLSGSSMA 719

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
           +++ +Q +   + ++        ++ +   D  E     + D       I          
Sbjct: 720 IVRNEQELDSIIQKAKLSTKYPVVISKFLEDSYEAEVDGVSDGKGVFGVIIEHVE----- 774

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           E    S +ST  +P +    + ++++ +A    + I  +G     F+        + +E+
Sbjct: 775 EAGVHSGDSTMSIPTREITHVSQDLKNIALSLAREINVKGPFNLQFVI--KDNVPYVIEM 832

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFREL-LLWMVE 294
           N++      S+ P  +   G +  E+ +  ++E
Sbjct: 833 NLR---ASRSM-PFSSKAKGTNLMEMAMKAIIE 861


>gi|294056567|ref|YP_003550225.1| phosphoribosylglycinamide formyltransferase 2 [Coraliomargarita
           akajimensis DSM 45221]
 gi|293615900|gb|ADE56055.1| phosphoribosylglycinamide formyltransferase 2 [Coraliomargarita
           akajimensis DSM 45221]
          Length = 394

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 86/305 (28%), Gaps = 39/305 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--------------------DRS 41
            +L G  S E    L  GK     L+  G +V  +D                       +
Sbjct: 15  VLLCG--SGE----L--GKEVVIELQRYGAEVIAVDAYANAPAMQVADRSHVISMLDGEA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   +P L    +     +         +  I  T      +       R      
Sbjct: 67  LRKVIETERPHLVVPEVEAIATDVLAQLEAEGVTTIVPTARATQLTMNREGIRRLAAEEL 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P V+KP+   S  G  ++K +  I        +  
Sbjct: 127 GLATSTYKFADNLDDFKAAIGEIGLPCVVKPIMSSSGKGQSLVKSEADIQYA--WDYAQE 184

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G     +  V+G       +   ++   +            ++          P  +  
Sbjct: 185 GGRAGKGKVIVEGFVDFDYEITQLTVRHIDG--TSFCEPIGHVQVDGDYRQSWQPQPMSA 242

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVS-IFPE 276
              +  Q +A     A+G  GI   +        +V + E++ +P   GM T +S   P+
Sbjct: 243 KARQSAQDMAEAITTALGGYGIFGVELFV--KGDEVIFSEVSPRPHDTGMVTMISQDLPQ 300

Query: 277 MAAYA 281
            A +A
Sbjct: 301 FALHA 305


>gi|229013152|ref|ZP_04170296.1| Pyruvate carboxylase [Bacillus mycoides DSM 2048]
 gi|228748102|gb|EEL97963.1| Pyruvate carboxylase [Bacillus mycoides DSM 2048]
          Length = 1148

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +P+ P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|229134755|ref|ZP_04263564.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST196]
 gi|228648801|gb|EEL04827.1| Pyruvate carboxylase [Bacillus cereus BDRD-ST196]
          Length = 1148

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +P+ P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|222087762|ref|YP_002546299.1| pyruvate carboxylase protein [Agrobacterium radiobacter K84]
 gi|221725210|gb|ACM28366.1| pyruvate carboxylase protein [Agrobacterium radiobacter K84]
          Length = 1166

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 168 MAEEIGYPVMLKASWGGGGRGMRAIRDPKDLAKEVTEAKREAMAAFGKDEVYLEKLVERA 227

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    D   +E+   +     A 
Sbjct: 228 RHVESQVLGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLTDAQRQELAAYSLKIAGAT 287

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    ++L D  + K +++E+N +
Sbjct: 288 GYVGAGTVEYLMDADTGKFYFIEVNPR 314


>gi|110802163|ref|YP_698464.1| biotin carboxylase [Clostridium perfringens SM101]
 gi|110682664|gb|ABG86034.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           perfringens SM101]
          Length = 450

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K++    +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSGEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|83646656|ref|YP_435091.1| acetyl/propionyl-CoA carboxylase subunit alpha [Hahella chejuensis
           KCTC 2396]
 gi|83634699|gb|ABC30666.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Hahella chejuensis
           KCTC 2396]
          Length = 664

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 86/279 (30%), Gaps = 27/279 (9%)

Query: 30  GFKVSQIDVDRS-VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           G   ++  +++  +  V    + D      +G   E+    A+     + +      A  
Sbjct: 53  GVTATETYLNQDKIIAVAKKCRADAIHPG-YGFLSENATFAALCAKESLIFIGPPAKAID 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVI 144
              DK R+K ++    VP+ P       ++D       ++  P ++K   GG   G+  +
Sbjct: 112 AMGDKARAKHLMEQANVPLIPGYHREDQSVDALRAQAEVVGYPVLLKASAGGGGKGMRAV 171

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +        L  +              ++ +      +                     +
Sbjct: 172 RSPSEFDEQLASAQREAKNAFGDQTMLIEKLIEQPRHVEVQIFFDAHGEGVYLFDRDCSI 231

Query: 205 KYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +          PA     +  +++   A    +AIG  G    +FL D  +   +++E+N
Sbjct: 232 QRRHQKIIEEAPAPNLADETRRKMGETAVACGKAIGYVGAGTVEFLVD-KNENFYFMEMN 290

Query: 264 VQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
            +              +       G    +L+ W ++ A
Sbjct: 291 TR----------LQVEHPVTEMITGL---DLVEWQIKVA 316


>gi|7544108|dbj|BAA94293.1| Carbamoyl-phosphate Synthetase [Leishmania amazonensis]
          Length = 1613

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 91/314 (28%), Gaps = 36/314 (11%)

Query: 2    AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
            AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 925  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGNKVILINYNPETVSTDYDECDRLYFD 981

Query: 40   ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                 +V  +L   +       L G   ++ ++      L I  T    +  A   +K  
Sbjct: 982  EVSEETVLDILTKERVRGVVISLGGQIVQNMVLSLKKSGLPILGTDPANIDMAEDRNKFS 1041

Query: 96   SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                      P   S        +    +  P +++P    S   + VI   + +   L 
Sbjct: 1042 KMCDNLGVPQPEWISATSVEQVHEFCDRVGYPALVRPSYVLSGSAMAVIANKEDVTRYLK 1101

Query: 156  QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            ++S  +    +++ +Y +            +     +     +       +S   +  + 
Sbjct: 1102 EASFVSGEHPVVVSKYYEDATEYDV--DIVAHHGRVLCYGICEHVENAGVHSGDATMFLP 1159

Query: 216  PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
            P     D  K +        + +   G     FL       +  +E NV+         P
Sbjct: 1160 PQNTDKDTMKRIYDSVNRIAEKLDVVGPMNVQFLLTAE-GHLRVIEANVR----KFRSVP 1214

Query: 276  EMAAYAGYSFRELL 289
             ++   G SF  ++
Sbjct: 1215 FVSKTLGISFPSVM 1228



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 95/303 (31%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  +L + G +   I+ +                      +V  V+   +PD    
Sbjct: 394 SGSQCLKSLREEGMETVLINPNIATVQTDDEMADHIYFVPLTVEAVERVIEKERPDGIL- 452

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------- 109
           +  G          + EL  +   +  +L + +S+  +   + +    +           
Sbjct: 453 LGWGGQTALNCGVKLDELGVLKKYNVQVLGTPVSVIAVTEDRELFRDTLLQINEQVAKSA 512

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + +   I  P +++        G  +++    +   +  +       Q+L+E
Sbjct: 513 AVTSVEEAVVASKDIGFPMMVRAAYCLGGQGSGIVENMAELRHKVEVAL--AASPQVLLE 570

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + V G            +    I V   + +     ++  +        +  D +  ++ 
Sbjct: 571 ESVAGW-KEIEYEVVRDIYDNCITVCNMENFDPMGVHTGESIVVAPSQTLSNDEFHHLRS 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            +    + +G  G     +  DP S +   +E+N +  ++  S     +   GY    + 
Sbjct: 630 ASIKIIRHLGIVGECNIQYGLDPFSHRYVVIEVNAR--LSRSS--ALASKATGYPLAHVA 685

Query: 290 LWM 292
             +
Sbjct: 686 TKI 688


>gi|163941686|ref|YP_001646570.1| pyruvate carboxylase [Bacillus weihenstephanensis KBAB4]
 gi|163863883|gb|ABY44942.1| pyruvate carboxylase [Bacillus weihenstephanensis KBAB4]
          Length = 1148

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +P+ P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|116490364|ref|YP_809908.1| carbamoyl-phosphate synthase large subunit [Oenococcus oeni PSU-1]
 gi|122277447|sp|Q04H29|CARB_OENOB RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|116091089|gb|ABJ56243.1| carbamoyl-phosphate synthase large subunit [Oenococcus oeni PSU-1]
          Length = 1064

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/292 (12%), Positives = 91/292 (31%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+K   I+ +                       V  V+   KP        G
Sbjct: 577 CVKAIQKAGYKAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPIGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     +++  T    +  +   +             P   +       +  
Sbjct: 637 QTAINLAGRLENNGVKLLGTSLKDINRSEDREDFNQVIKKLDLSQPFGKTATTVTQALSV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P        + ++   Q +   + ++   +    +LI+ Y+ G E    
Sbjct: 697 AEEVGYPLLIRPSYVLGGRAMEIVTNRQDLSDYMKRAVKVSLKHPVLIDSYLTGREAEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           ++ D    +     P    +       S +S  V P++    ++ +++   AF   + + 
Sbjct: 757 LLSDGQTIIV----PGIMEHIERAGVHSGDSMSVYPSQYLDQNVQEQMLDAAFKLAKELH 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      + + +E+N +   T     P ++        +L   
Sbjct: 813 TIGLMNVQFVIHEQ--QAYVIEVNPRASRT----LPFISKATDLPLAQLATR 858



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG   + +L + G+ V  ++ + +                     +  +L   +PD    
Sbjct: 29  SGTQASLSLREEGYSVVLVNSNPATIMTDTEIADQVYIEPLTLPFIKRILRKERPDALLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +               +E+  T    + +A   +K +         VP    
Sbjct: 89  TIGGQTALNLAKELAEDGILEELKIELLGTKLKAIEAAEDREKFKQLMEALKEPVPESRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +++P       G  +++  + +          +   Q+LIE+
Sbjct: 149 ARTLEQAVHFADQIGYPIIVRPAYTLGGTGGEIVENSEQLTEVAKNGLELSPVTQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDGNDNALIVASMENFDPVGIHTVDSIVVSPVQTLSDREYQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQLALDPDSLRYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|302811795|ref|XP_002987586.1| hypothetical protein SELMODRAFT_447020 [Selaginella moellendorffii]
 gi|300144740|gb|EFJ11422.1| hypothetical protein SELMODRAFT_447020 [Selaginella moellendorffii]
          Length = 2192

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              S +      +     +      +     I  P +IK   GG   GI  +  D+ +  
Sbjct: 174 PFESCRDGIPEELYKQACVFSAEEALAMCQKIGYPAMIKASWGGGGKGIRKVHNDEEVKA 233

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 234 LFKQVQGEVPGSPIFIMKVASQCRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 293

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P     +  + +++ A    Q +   G +  ++L+   + +  +LE+N +
Sbjct: 294 ITIAPP----ETVRLLEQGARRLAQCVSYVGAATVEYLYSMETGEFHFLELNPR 343


>gi|302811970|ref|XP_002987673.1| hypothetical protein SELMODRAFT_183371 [Selaginella moellendorffii]
 gi|300144565|gb|EFJ11248.1| hypothetical protein SELMODRAFT_183371 [Selaginella moellendorffii]
          Length = 2192

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/174 (14%), Positives = 55/174 (31%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
              S +      +     +      +     I  P +IK   GG   GI  +  D+ +  
Sbjct: 174 PFESCRDGIPEELYKQACVFSAEEALAMCQKIGYPAMIKASWGGGGKGIRKVHNDEEVKA 233

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 234 LFKQVQGEVPGSPIFIMKVASQCRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 293

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P     +  + +++ A    Q +   G +  ++L+   + +  +LE+N +
Sbjct: 294 ITIAPP----ETVRLLEQGARRLAQCVSYVGAATVEYLYSMETGEFHFLELNPR 343


>gi|226293572|gb|EEH48992.1| bifunctional pyrimidine biosynthesis protein (PyrABCN)
           [Paracoccidioides brasiliensis Pb18]
          Length = 2295

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+ + +PD  + 
Sbjct: 531 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKYERPDAIYV 590

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  ++     G     +   + R     S   +    +   +  
Sbjct: 591 TFGGQTALQVGIQLKDEFEQLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 650

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +    +    L   ++    Q+LIE+ +
Sbjct: 651 TLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAEDPDQLRD--LCMKAFAASPQVLIERSM 708

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 709 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 767

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 768 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 817


>gi|145220406|ref|YP_001131115.1| acetyl-CoA carboxylase, biotin carboxylase [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206570|gb|ABP37613.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           phaeovibrioides DSM 265]
          Length = 446

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ ++  I   L  + S           Y++       
Sbjct: 148 AKKTGYPVIIKPTAGGGGKGMRVVHEESQIEKALNTARSEAEQAFGNSGVYIEKFLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +                ++          P+    D + K++   A  A  AI 
Sbjct: 208 HVEIQIMSDQHGNTIHLGERDCTVQRRHQKLIEETPSPAVNDALRKKMGDAAVAAASAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDRHQN-FYFMEMNTR 292


>gi|46143750|ref|ZP_00134474.2| COG0439: Biotin carboxylase [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|126209327|ref|YP_001054552.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           pleuropneumoniae L20]
 gi|126098119|gb|ABN74947.1| Biotin carboxylase [Actinobacillus pleuropneumoniae serovar 5b str.
           L20]
          Length = 447

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 85/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------PDL--------------AF 55
                 A ++ G K   +    DR +  VL   +       P +                
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSVKSYLNIPMIIAAAEVT 73

Query: 56  NV--LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
           N   +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NADAIHPGYGFLSENADFAEQVENSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+  ++ +   +  + +      
Sbjct: 134 SDGPVGNDPAKNKEIAKRIGYPVIIKASGGGGGRGMRVVYNEKDLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 254 KFIGERCANACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|332995645|gb|AEF05700.1| acetyl-CoA carboxylase [Alteromonas sp. SN2]
          Length = 447

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    D+++  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADKNLKHVLLADESICIGKASATESYLNIPRIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NSIAIHPGYGFLAENADFAEAVEKSGFIFIGPTADTINLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   N         I  P ++K   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLTGDNDKNKTIAKRIGYPIIVKAAGGGGGRGMRVVRSEAELISAIETTQAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    ++ +
Sbjct: 194 GNATVYMEKFLENPRHVEIQILADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISELMR 253

Query: 226 EVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 NKIGDRCRRACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|282855665|ref|ZP_06264976.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter
           piscolens W5455]
 gi|282586513|gb|EFB91770.1| carbamoyl-phosphate synthase, large subunit [Pyramidobacter
           piscolens W5455]
          Length = 1364

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 95/301 (31%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQI-----------DVDRS----------VGLVLAHLKPDLAFNV 57
           G     AL   G +V  +           D+             +  ++   +PD   + 
Sbjct: 30  GTQACRALRALGIEVILVNSNPATIMTDSDIADKVYIEPLTVEILKRLVEKERPDGLLST 89

Query: 58  LHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
           + G  G    +Q      LE   +    + +     + D+   K ++   G PV PS + 
Sbjct: 90  IGGQNGLTLSMQLARDGWLESKGVRLLGASLDTIERAEDRQLFKDMLEKIGEPVIPSAIA 149

Query: 113 -VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M+    I  P +I+P       G  +      +     +    +   Q+L+E+ 
Sbjct: 150 TRVDEAMNFGAKIGYPVIIRPSFTLGGTGGGIAHNAAEMEQLARRGLEVSPVGQILVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V G +     M     D         +       ++  +        +    Y+ ++  A
Sbjct: 210 VAGWKEIEFEMMRDGDDNCIAICSMENLDP-VGVHTGDSIVVAPALTLADKEYQLLRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               + +  +G     F  +P + +   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LRIVRELEVQGGCNVQFALNPDNFEYAVIEVN--PRVSRSS--ALASKATGYPIAKVSAQ 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/289 (14%), Positives = 95/289 (32%), Gaps = 32/289 (11%)

Query: 22  CASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHG 60
           C  AL+  G+ V  I         D D              V  ++   +P        G
Sbjct: 583 CVWALKRLGYTVVMINNNPETVSTDFDTADRLYFEPLTPEDVMDIIRLERPLGVVVAFGG 642

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                         + I  T +  + +A   ++  +         P    +      +D+
Sbjct: 643 QTAIKLTKSLSENGVAILGTSADAIDAAEDRERFDAILNRCGIARPRGHGVETLEQALDA 702

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        +I+   D+S+   + +  +      +LI++Y++G E+   
Sbjct: 703 ARDIGYPVLVRPSYVLGGQNMIIAYDDESVSNYMRRLLAIGTDGPVLIDKYLEGTEVEVD 762

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D +  +     P    +       S +S    PA      + +++          +G
Sbjct: 763 AVCDGTDVLI----PGIMEHIERAGVHSGDSIAAYPAWNLSGPVTEKLVESTARIALELG 818

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
            +G+    ++    + +V+ +E N +   T     P ++   G    ++
Sbjct: 819 VKGLVNIQYVI--YNNQVYVIESNPRASRT----IPYISKVTGLPLVDI 861


>gi|78187802|ref|YP_375845.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium luteolum DSM
           273]
 gi|78167704|gb|ABB24802.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium luteolum DSM
           273]
          Length = 453

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ ++  +   L  + S           Y++       
Sbjct: 154 AKKTGYPVIIKPTAGGGGKGMRVVHEESQLEKALNTARSEAEQAFGNSGVYIEKFLENPR 213

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+ +  + + K +   A  A +AI 
Sbjct: 214 HVEIQILSDQHGNTLHLGERDCTVQRRHQKLIEETPSPVVDEALRKRMGDAAVAAAKAIN 273

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 274 YEGAGTIEFLLDRHKD-FYFMEMNTR 298


>gi|72383259|ref|YP_292614.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL2A]
 gi|72003109|gb|AAZ58911.1| acetyl-CoA carboxylase, biotin carboxylase [Prochlorococcus marinus
           str. NATL2A]
          Length = 447

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 ASEMGYPVMIKATAGGGGRGMRLVNHSDELENLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +   +   +   A  A ++
Sbjct: 209 HVEVQILADRFG--NVVHLGERDCSIQRRHQKLLEESPSPALDDHLRIRMGEAAVAAAKS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D  +   +++E+N +
Sbjct: 267 INYEGAGTVEFLLD-RNGSFYFMEMNTR 293


>gi|328945004|gb|EGG39161.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1087]
          Length = 455

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVIHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|328543662|ref|YP_004303771.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [polymorphum gilvum
           SL003B-26A1]
 gi|326413406|gb|ADZ70469.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Polymorphum gilvum
           SL003B-26A1]
          Length = 448

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 87/285 (30%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKVSQI----DVDR----------------------SVGLVLAHLKP- 51
                 A ++ G     +    D D                       ++  +LA  +  
Sbjct: 14  ALRVLRACKELGISTVAVHSTADADAMHVRLADESVCIGPPPARDSYLNIPQLLAACEIT 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     ILE   I +         +  DK+ +KQ     G+PV P
Sbjct: 74  GADAVHPG-YGFLSENARFAEILEAHGITFIGPTSEHIRIMGDKIEAKQTAKRLGIPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +            I  P ++K   GG   G+ V   +  +   L  + S     +
Sbjct: 133 GSDGAVTPKDDAHAIAREIGYPVLVKAAAGGGGRGMKVAMTEAHLDNALSTARSEAKAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 + +       +   V+GD   +   +            K      +  L A   
Sbjct: 193 GDDALYMEKYLARPRHIEIQVLGDGQGNAIHLGERDCSLQRRHQKVLEEAPSPALNASQR 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++I + V      A + +  RG    +FL+     + +++E+N +
Sbjct: 253 MEIGEIVA----DAMRKLKYRGAGTVEFLY--EDGEFYFIEMNTR 291


>gi|226425255|gb|ACO53627.1| acetyl-CoA carboxylase 4 [Arachis hypogaea]
          Length = 2260

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P        K +++ A    +++   G +  ++LF   + + ++
Sbjct: 297 QRRHQKIIEEGPITVAPP----QTVKLLEQAARRLAKSVNYVGAATVEYLFSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|262341277|ref|YP_003284132.1| biotin carboxylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
 gi|262272614|gb|ACY40522.1| biotin carboxylase [Blattabacterium sp. (Blattella germanica) str.
           Bge]
          Length = 453

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 71/213 (33%), Gaps = 7/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV-----CPSILV 113
           +G   E+    ++     I +  +         +K+ +K+ +   G+       C S   
Sbjct: 82  YGFLSENAYFSSMCHKHGIKFIGAKPNHMIQMGNKISAKKTMKKAGISCLPGSDCFSEFS 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        I  P +IK + GG   GI  +   +S+     ++           + Y++
Sbjct: 142 YKEIEYFADKIGYPVIIKAVSGGGGKGIRSVFDKKSLKNSWEEAQKEAWSCFRKKDMYIE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + L    +    L                ++  +       P+      + K++   A 
Sbjct: 202 KLILDPRHIEIQILGDKYGKACHLSERDCSIQRRNQKLVEEAPSPFLTSSLRKKMGNEAV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + I   G+   +FL D      +++E+N +
Sbjct: 262 KAAEFIHYEGVGTMEFLVDQNKN-FYFMEMNPR 293


>gi|163736134|ref|ZP_02143553.1| acetyl-CoA carboxylase, biotin carboxylase [Phaeobacter
           gallaeciensis BS107]
 gi|161390004|gb|EDQ14354.1| acetyl-CoA carboxylase, biotin carboxylase [Phaeobacter
           gallaeciensis BS107]
          Length = 450

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRVMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               +++   I      P +IK   GG   G+ V K    +    + + +     + + +
Sbjct: 137 GVPDLETAKKIGEDIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +    A   I   G    +FL+     + +++E+N +
Sbjct: 253 ARIGKTCAEAVAKINYIGAGTIEFLY--EKGEFYFIEMNTR 291


>gi|297846664|ref|XP_002891213.1| acetyl-CoA carboxylase 2 [Arabidopsis lyrata subsp. lyrata]
 gi|297337055|gb|EFH67472.1| acetyl-CoA carboxylase 2 [Arabidopsis lyrata subsp. lyrata]
          Length = 2364

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 58/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 304 IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVKCLFKQVQGEVPGS 363

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D + +V  +            K        V P     + 
Sbjct: 364 PIFIMKVASQSRHLEVQLLCDQNGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 419

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 420 VKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 461


>gi|259485297|tpe|CBF82202.1| TPA: conserved hypothetical protein [Aspergillus nidulans FGSC A4]
          Length = 795

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +I++   +  +L ++ S         +  ++    +  
Sbjct: 187 AAQIGFPVMLKASAGGGGKGMRIIREAGQLQAELERAQSEALRSFGSADCILEMYVESSK 246

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIG 239
            +    L  +   V         ++          P     +  ++     A    + +G
Sbjct: 247 HVEIQLLGDSYGEVVSFFERDCSVQRRHQKVIEETPCTFLTEKTRQEMSATAVRIAKLLG 306

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
                  +F+ D ++ K ++LE+N
Sbjct: 307 YENAGTVEFVVDAVTGKFYFLEVN 330


>gi|251793594|ref|YP_003008323.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           aphrophilus NJ8700]
 gi|247534990|gb|ACS98236.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           aphrophilus NJ8700]
          Length = 393

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/282 (12%), Positives = 76/282 (26%), Gaps = 29/282 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGEALRALVEQERPDYIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         IP   +  L       +  + + +          +       
Sbjct: 84  EAITTDTLVALEQEGFTVIPTAKATKLTMNREGIRRLAAEELGLPT-SPYQFVDNFADFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VI+    I        +   G        V+G    
Sbjct: 143 SAVEKIGVPCVVKPIMSSSGHGQSVIRSLDQIQRA--WDYAQQGGRAGAGRVIVEGFVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++         +     +            P  +     ++ Q +A     A+
Sbjct: 201 DYEITLLTVRHINGTSFLAPVGHIQEDG--DYRESWQPQAMSEVALQKAQNIAEKITGAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           G RGI   +         V + E++ +P      +   ++  
Sbjct: 259 GGRGIFGVEMFI--RGDDVIFNEVSPRP--HDTGMVTMISQE 296


>gi|237714331|ref|ZP_04544812.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           D1]
 gi|262408165|ref|ZP_06084712.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_22]
 gi|294645110|ref|ZP_06722835.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CC 2a]
 gi|294809738|ref|ZP_06768425.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|229445495|gb|EEO51286.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           D1]
 gi|262353717|gb|EEZ02810.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_22]
 gi|292639534|gb|EFF57827.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CC 2a]
 gi|294443072|gb|EFG11852.1| carbamoyl-phosphate synthase, large subunit [Bacteroides
           xylanisolvens SD CC 1b]
 gi|295088077|emb|CBK69600.1| carbamoyl-phosphate synthase large subunit [Bacteroides
           xylanisolvens XB1A]
          Length = 1073

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q +L+   +    + + A   + D+    + +    +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGVLDKYGVKVLGTSVEAIMYTEDRDLFVKKLDEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICANEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELAL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSETDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|218458182|ref|ZP_03498273.1| pyruvate carboxylase [Rhizobium etli Kim 5]
          Length = 370

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 34  MAEEIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERA 93

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 94  RHVESQVLGDTHSNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 153

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 154 NYIGAGTVEYLMDADTGKFYFIEVNPR 180


>gi|217978744|ref|YP_002362891.1| urea carboxylase [Methylocella silvestris BL2]
 gi|217504120|gb|ACK51529.1| urea carboxylase [Methylocella silvestris BL2]
          Length = 1172

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +      +             +      Y++       
Sbjct: 147 AERIGYPVMLKSTAGGGGIGMQLCFGPDELAARFESVRRLGANNFGDNRVYLEKFVARAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D  +   +  A    QA+ 
Sbjct: 207 HVEVQIFGDGKGGVVALGERDCSLQRRNQKVIEETPAPGLTDESRAALREAAIALGQAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA------GYSFRELLLWMV 293
                  +F++D   +K ++LE+N +              +       G    +L+ WMV
Sbjct: 267 YESAGTVEFVYDADQQKFYFLEVNTR----------LQVEHCVTEMVFGV---DLVEWMV 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RQAA 317


>gi|163741336|ref|ZP_02148728.1| acetyl-CoA carboxylase [Phaeobacter gallaeciensis 2.10]
 gi|161385689|gb|EDQ10066.1| acetyl-CoA carboxylase [Phaeobacter gallaeciensis 2.10]
          Length = 450

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 69/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   + +         +  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRVMGDKITAKDTMKDLGVPCVPGSDG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               +++   I      P +IK   GG   G+ V K    +    + + +     + + +
Sbjct: 137 GVPDLETAKKIGEDIGYPVIIKATAGGGGRGMKVAKTAADMEQAFMTARAEGKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGKAVHLGERDCSLQ----RRHQKVFEEAPGPCITPEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +    A   I   G    +FL+     + +++E+N +
Sbjct: 253 ARIGKTCAEAVAKINYIGAGTIEFLY--EKGEFYFIEMNTR 291


>gi|34495473|ref|NP_899688.1| biotin carboxylase [Chromobacterium violaceum ATCC 12472]
 gi|34101329|gb|AAQ57698.1| probable biotin carboxylase [Chromobacterium violaceum ATCC 12472]
          Length = 654

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 26/144 (18%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++KP  GG   G+ V+  +  +   +  +              V+        +
Sbjct: 150 EIGYPVILKPSAGGGGKGMQVVWSEAELREAVDAAVRIGRSSFGDGRLLVERYVSQPRHL 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
                     A          L+          PA   P D  + +   A    QAIG R
Sbjct: 210 EVQIFGDGRGAAVHLFERECSLQRRHQKIVEEAPACGLPADTREALLAAAVRGAQAIGYR 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                +F+  P   + ++LE+N +
Sbjct: 270 NAGTFEFILAP-DGRFYFLEVNTR 292


>gi|314936697|ref|ZP_07844044.1| pyruvate carboxylase [Staphylococcus hominis subsp. hominis C80]
 gi|313655316|gb|EFS19061.1| pyruvate carboxylase [Staphylococcus hominis subsp. hominis C80]
          Length = 1149

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/231 (12%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIEVAKRANVDAIHPG-YGFLSENEEFARRCNEEGITFIGPHLDHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P         D           P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKANLPVIPGTDGPIENFDAAKAFAKEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAQKSFGNSEVYIERYIDNPKHIEVQVIGDEYGDIVHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+   P ++ + + + A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLPDELRERICQSALQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|295677718|ref|YP_003606242.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1002]
 gi|295437561|gb|ADG16731.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1002]
          Length = 454

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDDPKEIVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|145351740|ref|XP_001420225.1| predicted protein [Ostreococcus lucimarinus CCE9901]
 gi|144580458|gb|ABO98518.1| predicted protein [Ostreococcus lucimarinus CCE9901]
          Length = 1994

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 67/215 (31%), Gaps = 8/215 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF    G                I      +     S   +          V    ++
Sbjct: 119 DIAFL---GPPASAMDAVGDKICANILAQSCDVNVIPWSGSGLTVPGTSIPEDVLKQATL 175

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ- 170
                 +     I  P +IK  +GG   GI  +   + +     Q  +   G  + I++ 
Sbjct: 176 TDVADAVQRVGKIGFPVMIKASEGGGGKGIRKVNSIEELKTGFAQVQAEVPGSPIFIQKL 235

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            VD   L   ++ DA      +            K        V P  +  ++ +     
Sbjct: 236 SVDSRHLEVQMVADAHGQAIALYGRDCSVQRRHQKIIEEGPITVAPRALCEELER----G 291

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A    + +G  G+   ++L++  + +  +LE+N +
Sbjct: 292 AVRLAKKVGYCGVGTVEYLYNIKTGEYSFLEVNPR 326


>gi|150400093|ref|YP_001323860.1| pyruvate carboxylase subunit A [Methanococcus vannielii SB]
 gi|150012796|gb|ABR55248.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus vannielii
           SB]
          Length = 506

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 79/278 (28%), Gaps = 37/278 (13%)

Query: 22  CASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPD 52
              A  + G K   +  D                               +  V      D
Sbjct: 17  VIRACTELGIKTVAVYSDADEHSLYRSLADECYPIGEAPALKSYLNIERILKVAEKAGVD 76

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                 +G   E+           I +      A  +   K+ +K+ +   GVPV P   
Sbjct: 77  AIHPG-YGFLSENVKFAEACAKKGIEFIGPPTNAIDVMGSKINAKKAMKDAGVPVLPGRE 135

Query: 113 VNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +        I  P +IK   GG  +G+ V+   + +   +  + S         
Sbjct: 136 EPIENEEDAILVAEEIGYPVIIKASAGGGGIGMNVVYNKEELVDTINSTKSIAQSAFGDS 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             +++        +    +      +         ++          P   +  ++  ++
Sbjct: 196 TVFIEKYLEKPRHIEIQVVADKFGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRAKM 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +AI    +   +FL+   + + ++LE+N +
Sbjct: 256 GEAAIKAAKAIDYHSVGTVEFLY--SNGEFYFLEMNTR 291


>gi|305667330|ref|YP_003863617.1| carbamoyl-phosphate synthase large subunit [Maribacter sp.
           HTCC2170]
 gi|88709378|gb|EAR01611.1| carbamoyl-phosphate synthase, large subunit [Maribacter sp.
           HTCC2170]
          Length = 950

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/304 (11%), Positives = 89/304 (29%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L +   +   I         D              +S+  +L    + D   
Sbjct: 29  SGSQALRSLREDNIETILINSNPATIMTDPTMADHVYLKPLTTKSIIDILKEHPQIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E  ++      I A  ++ D+ + ++++   G+ +    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFDVEIIGVDIDAINITEDREQFRELMLKIGIGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++ K +     L +    +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLVIRASYTLGGAGASIVYKPEDFDELLSRGLEISPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             K    
Sbjct: 209 KALMGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ASKL 328



 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/255 (12%), Positives = 81/255 (31%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLSKYGIKIIGTSFESLD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    ++   P           ++    +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSTLLEENNIPFPQFGVAETADEALELADKLDFPLLVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   ++        ++LL++ Y+DG IE     + D +       +   +       
Sbjct: 740 KEELEQHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGTDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F        V+ +E N +
Sbjct: 800 ---DSNATLPPFNLGEFVMQQIKDHTKKIALALNTVGLINIQFAV--KDDMVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|110633374|ref|YP_673582.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mesorhizobium
           sp. BNC1]
 gi|110284358|gb|ABG62417.1| biotin carboxyl carrier protein / biotin carboxylase [Chelativorans
           sp. BNC1]
          Length = 670

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 52/187 (27%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   D        +S S           +++       
Sbjct: 148 AAEIGYPVMIKASAGGGGKGMRIAWNDAEAREGFERSRSEAASSFGDNRIFIEKFVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                ++  +       P+         E+   A    +A+ 
Sbjct: 208 HIEIQVLGDGFGNCIHLGERECSIQRRNQKVVEEAPSPFLDAKTRAEMGAQAIALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDSERN-FYFLEMNTR----------LQVEHPVTELVTGI---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  R
Sbjct: 314 RIAAGER 320


>gi|67538202|ref|XP_662875.1| hypothetical protein AN5271.2 [Aspergillus nidulans FGSC A4]
 gi|40743241|gb|EAA62431.1| hypothetical protein AN5271.2 [Aspergillus nidulans FGSC A4]
          Length = 1355

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 50/144 (34%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +I++   +  +L ++ S         +  ++    +  
Sbjct: 747 AAQIGFPVMLKASAGGGGKGMRIIREAGQLQAELERAQSEALRSFGSADCILEMYVESSK 806

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIG 239
            +    L  +   V         ++          P     +  ++     A    + +G
Sbjct: 807 HVEIQLLGDSYGEVVSFFERDCSVQRRHQKVIEETPCTFLTEKTRQEMSATAVRIAKLLG 866

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
                  +F+ D ++ K ++LE+N
Sbjct: 867 YENAGTVEFVVDAVTGKFYFLEVN 890


>gi|226425237|gb|ACO53618.1| biotin carboxylase 3 [Arachis hypogaea]
          Length = 540

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIWVMGDKSTARDTMKNAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|239907446|ref|YP_002954187.1| putative pyruvate carboxylase [Desulfovibrio magneticus RS-1]
 gi|239797312|dbj|BAH76301.1| putative pyruvate carboxylase [Desulfovibrio magneticus RS-1]
          Length = 1223

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/248 (10%), Positives = 75/248 (30%), Gaps = 15/248 (6%)

Query: 31  FKVSQIDVDR----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL------EIPYT 80
            ++  +  D      +  ++   K       +H  +G                   I  +
Sbjct: 52  HELITLGPDPRAYLDIDGIIKKAKARGVV-AIHPGWGFASEDCEFPRKCAEAGIIFIGSS 110

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
              + +    ++  R    +    VP     +      +    I  P ++K   GG   G
Sbjct: 111 ADAMKSLGNKVEVRRLAMSLGIPVVPGSEGSVTIPEAREIAKKIGFPIMLKAEGGGGGRG 170

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I  I  +  +     ++S+           +V+ +  +   +           V   D  
Sbjct: 171 IYEIYSEAQLESAFSKASAMAQASFGNPHLFVEKLLTSVRHIEIQVAGDRFGNVFAFDER 230

Query: 201 SYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
              ++ +      + P+       ++ + ++       +  G   ++  +FL D  + + 
Sbjct: 231 DCSVQRNHQKLVEITPSPWRGMTDELRQRLKDYGERLVRETGYYSLATVEFLVDA-NGEP 289

Query: 258 FWLEINVQ 265
           + +E+N +
Sbjct: 290 YLIEVNTR 297


>gi|134298929|ref|YP_001112425.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           reducens MI-1]
 gi|134051629|gb|ABO49600.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Desulfotomaculum reducens MI-1]
          Length = 448

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I E   I +      A     +K  ++  +    VPV P    
Sbjct: 77  AIHPGYGFLAENANFAEICEDCGIAFIGPSRHAIEFMGNKALARNTMIKANVPVVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P +IK   GG   G+ V   ++ +   +  + +         +
Sbjct: 137 AVSDEEEVIRIAKEIGYPVLIKASAGGGGRGMRVAHSEEDLLKAINTAKNEAQAAFGNGD 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L   E  +         ++  +       P+     ++ + + 
Sbjct: 197 VYLEKYVEQPRHIEFQILGDKEGNIVYLGERDCSVQRRNQKVIEEAPSVALTPELRRVMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A QA+        +FL D  +   +++E+N +
Sbjct: 257 DTAVKAAQAVNYYNAGTVEFLLD-KNNNFYFIEMNTR 292


>gi|325285080|ref|YP_004260870.1| carbamoyl-phosphate synthase large subunit [Cellulophaga lytica DSM
           7489]
 gi|324320534|gb|ADY27999.1| carbamoyl-phosphate synthase, large subunit [Cellulophaga lytica
           DSM 7489]
          Length = 950

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 81/255 (31%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIQHEKPEGVIVQLGGQTALKLAEKLSKYGIKIIGTSFESLD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A          + ++   P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGNFSKMLLENNIPFPKYGIAETADEALTLADELDFPLLVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            Q +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KQELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCG---V 796

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   + ++++        A+   G+    F        V+ +E N +
Sbjct: 797 HSGDSNATLPPFNLGEFVMQQIKDHTKKIALALNTVGLINIQFAI--KDDMVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865



 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/304 (12%), Positives = 88/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  +L      D   
Sbjct: 29  SGSQALRSLREDGIETILINSNPATIMTDPTMADHIYLKPLNTKSIIEILKKHPNIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E   +      I A  ++ D+ + ++++   GV +    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFNVEIIGVDIDAINITEDREKFRELMLKIGVGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++ K +     L +    +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLVIRASYTLGGAGASIVYKPEDFDELLSRGLEISPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVVIICTIENMDPMGIHTGDSITVAPAMTLSDSTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ASKL 328


>gi|307107221|gb|EFN55464.1| hypothetical protein CHLNCDRAFT_133810 [Chlorella variabilis]
          Length = 1250

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 73/229 (31%), Gaps = 5/229 (2%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D  F   +G   E+    A+ E   I +         +   K  ++++ 
Sbjct: 67  KLIEVAKSTGCDAVFPG-YGFLSENTEFAAMCEDNGIAFIGPTADTMRMFAQKHTARELA 125

Query: 101 SSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               VP+      +      ++    +  P ++K   GG  +GI + + +  +  +   +
Sbjct: 126 ERAEVPILAGSPLLSSGEEALEYAKKVGLPVLLKATGGGGGIGIHICRSEDEVVNNYASA 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP- 216
           S            +V+        +        + A+         ++          P 
Sbjct: 186 SRQGAAAFGDAGVFVEKYVQRARHIEVQIFGDGKGAIVAFPERECSIQRRHQKVLEETPS 245

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  ++   +Q  A    Q    R     +F+ D  + + ++LE+N +
Sbjct: 246 PFVTPELRAALQGAAVRLGQLAKYRSAGTVEFIVDDETGEFYFLEVNTR 294


>gi|300123093|emb|CBK24100.2| Biotin carboxylase [Blastocystis hominis]
          Length = 338

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/250 (16%), Positives = 87/250 (34%), Gaps = 20/250 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
             +D+D+ +  +  + K D      +G   E+       +   I +         L   K
Sbjct: 59  VFLDIDK-IIEIAKNNKVDAIHPG-YGFLSENPEFPKRCKENGIKFVGPSYETMRLLSSK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             +K++   CG+P  P    +  +     +  + I  P ++K   GG   G+ ++    S
Sbjct: 117 KDAKELAQRCGIPTIPGYSGSDQSTARLLEEINKIGYPVLLKASMGGGGRGMRILSDSNS 176

Query: 150 IPLDLLQSSSWNHGDQLLIEQY-------VDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
             L  + SS  N  ++   + +            +   V GD+  DV ++   +      
Sbjct: 177 NQLAEIISSCRNEAEKHFGDGHLLLEKFLPRTRHIEIQVFGDSHGDVVQLGERECSLQRR 236

Query: 203 ELKYSSLNSTH-------VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
             K    +           L   +  +    +   A    Q     G +  +FL D  +R
Sbjct: 237 YQKLIEESPCVSPFLLFSHLQFYLSDEERSRLYSWALTLTQQSHYEGAATVEFLCDAATR 296

Query: 256 KVFWLEINVQ 265
           + +++E+N +
Sbjct: 297 RFYFMEVNTR 306


>gi|291532573|emb|CBL05686.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Megamonas hypermegale ART12/1]
          Length = 474

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/312 (12%), Positives = 89/312 (28%), Gaps = 53/312 (16%)

Query: 22  CASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHLKPD 52
              A ++ G +   +  D                               +       + D
Sbjct: 17  IIRACQEMGIETVAVYSDEDADAMHVRLADYSYNIGPADASESYLNIDALMEAAERTEAD 76

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
                 +G   ED     ++    + +            DK  ++  +   G+P+     
Sbjct: 77  AVHPG-YGFLSEDADFAEMVTKAGMTWIGPWADTIRKVGDKDEARAAMIPSGIPMSKGST 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++    +  P ++KP+ GG   G+++   +  +   L               
Sbjct: 136 PLTSVEDAVEQAKDVGYPIILKPVAGGGGKGMLIANSEDDLRNILTIIDINKV-KYYFEH 194

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   ++ D    V  +   +        K    + +  L      ++      
Sbjct: 195 YIEHSRHIEVQIVADNYGHVIHLGERECSLQRRNQKLLEESPSIALTPDRRAEVGA---- 250

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSF 285
           LA  A +++    I   +FL D  + +  ++EIN +     G+T         A  G   
Sbjct: 251 LAIKAAKSVHYNNIGTVEFLLDLKTNQFNFMEINPRIQVEHGVTE--------AVTGI-- 300

Query: 286 RELLLWMVEDAS 297
            +L+   +  A+
Sbjct: 301 -DLVRTQIRIAA 311


>gi|239504121|ref|ZP_04663431.1| putative Acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Includes: biotin carboxylase; biotin carboxyl carrier
           [Acinetobacter baumannii AB900]
          Length = 646

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/224 (16%), Positives = 70/224 (31%), Gaps = 7/224 (3%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                D      +G   E+          +I +      A  L   K  SK  +   GVP
Sbjct: 72  KKTGVDAVHPG-YGFLSENTDFAQACIDNQITFIGPTASAIELMGSKRLSKIAMIEAGVP 130

Query: 107 VCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P    +R            I  P ++K   GG   G+ ++++   +   L  + S   
Sbjct: 131 CVPGYEGDRQDLEYLTTQAEQIGFPIMVKASSGGGGRGMRLVQQTSELFEALQTARSEAE 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPL 221
                 E  ++   +    +       T             ++          P   +  
Sbjct: 191 NAFGSGELILEKAVIAPRHVEIQVFGDTHGNYVYLFERDCSIQRRHQKVVEEAPCPVMTP 250

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ +++   A  A +A    G    +FL D  S + ++LE+N +
Sbjct: 251 ELRQKMGEAAVAAAKACAYVGAGTVEFLLDA-SGEFYFLEMNTR 293


>gi|253701259|ref|YP_003022448.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M21]
 gi|251776109|gb|ACT18690.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacter sp. M21]
          Length = 446

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 73/212 (34%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CPSILVN 114
           +G   E+ +   I E   I +      +  +  DK+ ++Q V   GVP+       +   
Sbjct: 82  YGFLSENPVFAEICEKCGITFIGPSAESMRIMGDKISARQAVIKVGVPILPGTKEGVHDV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ ++    ++P     + +         E Y++ 
Sbjct: 142 AEAIKVAKEIGFPVIIKATAGGGGRGMKIVHSPAALPNAFATARAEAQSGFGNPEVYIER 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
              +   +    L      V         ++          P      ++ K +   A  
Sbjct: 202 YCESPRHVEIQILADKHGNVVHLGERDCSIQRRHQKVIEEAPSTVTTPELRKAMGEAAVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+    +   +FL D  +   F++E+N +
Sbjct: 262 AAKAVNYCSVGTMEFLVD-KNNNFFFMEMNTR 292


>gi|86450075|gb|ABC96226.1| carbamoylphosphate synthetase [Brachystoma robertsonii]
          Length = 1276

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTAFNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEQVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSIAEALEAAEKLGYPVMARAAFSLGGLGSGFASNIEEL--KILAKQALAHSNQLVIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLA 656


>gi|86450103|gb|ABC96240.1| carbamoylphosphate synthetase [Drapetis sp. JKM-2006]
          Length = 1298

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPTGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELEKSGIFKKYNVRIMGTPIRSIIETEDRKVFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG         +  D+L + +  H +QL+I++
Sbjct: 488 VYSVSEALQAAEKLGYPVMARAAFSLGGLGSGFANNKDEL--DVLATQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|119896979|ref|YP_932192.1| propionyl-CoA carboxylase subunit alpha [Azoarcus sp. BH72]
 gi|119669392|emb|CAL93305.1| probable propionyl-CoA carboxylase alpha chain [Azoarcus sp. BH72]
          Length = 668

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/187 (11%), Positives = 54/187 (28%), Gaps = 20/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D+          +           +++   L   
Sbjct: 148 AKKIGYPVMIKASAGGGGKGLRVAYNDEQAFEGFSSCVNEARNSFGDDRVFIEKYVLEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +       +     ++          P+       ++     A    +A+ 
Sbjct: 208 HIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIEEAPSPFVDAEMRKAMGEQAVALARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+    +++ ++LE+N +              +       G    +L+  M+
Sbjct: 268 YESAGTVEFVVSGATKEFYFLEMNTR----------LQVEHPVTELITGL---DLVEQMI 314

Query: 294 EDASCLR 300
             A+  +
Sbjct: 315 RVAAGEK 321


>gi|146305738|ref|YP_001186203.1| urea amidolyase related protein [Pseudomonas mendocina ymp]
 gi|145573939|gb|ABP83471.1| urea amidolyase related protein [Pseudomonas mendocina ymp]
          Length = 1209

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 52/185 (28%), Gaps = 18/185 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+       ++                    +++       
Sbjct: 147 ADSIGYPVMLKTTAGGGGIGLTRCSDAAALASAYDSVKRMGEQFFSDAGVFLERFVDQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA   P    + +   A    +++ 
Sbjct: 207 HVEVQIFGDGTGRVAALGERDCSLQRRNQKVVEETPAPNLPQATRERLHAAAVQLGESVQ 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F++D      ++LE+N       P         EM    G    +L+  M+ 
Sbjct: 267 YRSAGTVEFIYDAARDDFYFLEVNTRLQVEHP-------VTEM--VTGL---DLIECMLR 314

Query: 295 DASCL 299
            A+  
Sbjct: 315 VAAGD 319


>gi|34398203|gb|AAQ67191.1| CAD [Platypalpus sp. NCSU-99071984]
          Length = 1293

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPTGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + V+     V    +
Sbjct: 428 TFGGQTALNCGVELERTGIFKKYNVRIMGTPIRSIIETEDRKVFAERVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG         +  D+L   +  H +QL+I++
Sbjct: 488 VYSVSEALEAAEKLGYPVMARAAFSLGGLGSGFANNKDEL--DVLARQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|85707168|ref|ZP_01038255.1| acetyl-CoA carboxylase [Roseovarius sp. 217]
 gi|85668327|gb|EAQ23201.1| acetyl-CoA carboxylase [Roseovarius sp. 217]
          Length = 449

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 70/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPSAEHIRIMGDKITAKDTMKALGVPCVPGSEG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
              T+     +      P ++K   GG   G+ V +    +    L + S     + + +
Sbjct: 137 GIATLKQAQALCADIGFPIIVKATAGGGGRGMKVAQNAAELEKAFLTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGRAVHLGERDCSLQ----RRHQKVLEEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A   I  RG    +FL+       F++E+N +
Sbjct: 253 ARIGKICADACANIQYRGAGTIEFLY--EKGDFFFIEMNTR 291


>gi|332716371|ref|YP_004443837.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           sp. H13-3]
 gi|325063056|gb|ADY66746.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Agrobacterium
           sp. H13-3]
          Length = 667

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/276 (14%), Positives = 84/276 (30%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   + +   D      +G   E+      LE   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIENTGADAVHPG-YGFLSENAAFAEALEKAGVIFIGPPVGAIQAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +         +     I  P +IK   GG   G+ +   D    
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIGDADEAVRIASEIGYPVMIKASAGGGGKGMRIAFNDAEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      +         ++  +   
Sbjct: 179 EGFQSSKNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNILYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D      ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALSRAVGYHSAGTVEFIVDGERN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELVTGI---DLVEQMIRVASGEK 320


>gi|126179586|ref|YP_001047551.1| pyruvate carboxylase subunit A [Methanoculleus marisnigri JR1]
 gi|125862380|gb|ABN57569.1| pyruvate carboxylase subunit A [Methanoculleus marisnigri JR1]
          Length = 491

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/280 (11%), Positives = 77/280 (27%), Gaps = 35/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL--------------------VLAHLKP-DLA--- 54
                 A  + G     I  +                          L   +  D+A   
Sbjct: 16  AIRVMRACRELGIDTVAIYSEPDSNALHVKYADEAFCVGEAHPSKSYLNKERICDVARKT 75

Query: 55  -FNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
               +H   G   E+     ++E   + +             K+ SK+++   GVP    
Sbjct: 76  GAEAIHPGYGFLAENAGFAKLVEEEGLTFIGPSWKTIEALGSKIGSKKMMREAGVPVLPG 135

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +            I  P ++K   GG  +G+ + + +  +   L            
Sbjct: 136 TPEGVTSVEEAKKVAAEIGYPVIVKASAGGGGIGMHIAENEGELEEALDAGMRIAQSAFG 195

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYK 225
               +V+        +    L   +            ++          P   +   + +
Sbjct: 196 DPTIFVEKYLTKPRHIEIQVLADAKGHTVHLYDRECSIQRRHQKLLEEAPCPIMTPALRE 255

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A  A +A   +     +FL+   +   +++E+N +
Sbjct: 256 QMTVSAIAAAKAANYKNAGTVEFLY--ANGNYYFMEVNTR 293


>gi|332971694|gb|EGK10642.1| carbamoyl-phosphate synthase, large subunit [Desmospora sp. 8437]
          Length = 1070

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 90/298 (30%), Gaps = 32/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  ++ +                      S+  ++   +P     
Sbjct: 28  SGTQACLALKEEGIRVILVNNNPATIMTDPETADVVYAEPLTVDSLARIIERERPQGLLA 87

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G  G +       Q IL+   +    + + A     D+   +         VP   +
Sbjct: 88  TVGGQTGLNLAVQLQEQGILDKFGVKLLGTPVEAIRRGEDRQAFKEMMEGIGEPVPEGKT 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     I  P +I+P       G    + +  +     +  + +   Q+L+E+
Sbjct: 148 VSTTEEALQFAESIGYPVIIRPAYTLGGFGGGTARDEAELAQVARRGLAASPIGQILVEE 207

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T IAV   +       ++  +        +     + +  +
Sbjct: 208 SILGW-KEIEYEMMRDSADTCIAVCNMENIDPVGVHTGDSIVTAPTQTLTYGQCRLLHTV 266

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           A    + +   G     F   P +     +E+N  P ++  S     +   GY    L
Sbjct: 267 ACKVIRELQVIGGCNIQFAVHPDTGDYRIIEVN--PRVSRSS--ALASKATGYPIARL 320



 Score = 38.7 bits (88), Expect = 1.2,   Method: Composition-based stats.
 Identities = 34/267 (12%), Positives = 84/267 (31%), Gaps = 17/267 (6%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  V    +         G      +     E L I  T + I+ 
Sbjct: 609 DRLYFEPLTV---EDVLRVAEKEQVTGVLVQYGGQTAVRLVRGLEEEDLTILGTSADIID 665

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
                 +                +    +  + +   +  P +++P       G+ V+ +
Sbjct: 666 RVEDRHRFYDLLRELEIPHIPGKTANSLQEALQAADHLGYPLLLRPSYVIGGQGMQVVWE 725

Query: 147 DQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
            + +   + +           +L++++V+G+E+    + D    V    V   +      
Sbjct: 726 KEQLEAAMSRYLRTLPDQAYPILLDRFVEGMEVEVDAVTDGKDLVIPTLVQHVERAG--- 782

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  + + +    +  +  + V        +A+   G+    F+       V+ LE+N 
Sbjct: 783 VHSGDSLSILAAPDLSEEQRETVVDFTGRIARALSHAGLINIQFVV--EGETVYVLEVNP 840

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +   T     P ++   G     L+ W
Sbjct: 841 RASRT----IPVISKVTGLP---LVEW 860


>gi|86450083|gb|ABC96230.1| carbamoylphosphate synthetase [Euthyneura sp. JKM-2006]
          Length = 1296

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTREYVEQVIKSERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + V+     V    +
Sbjct: 427 TFGGQTALNCGVELERAGIFKKYNVRIMGTPIQSIIETEDRKIFAERVAEIGEQVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L  ++  +  QL+I++
Sbjct: 487 VTSVNEALDAADKLGYPVMARAAFSLGGLGSGFANCKEEL--KVLAHNALAYSHQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVIGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|116196260|ref|XP_001223942.1| hypothetical protein CHGG_04728 [Chaetomium globosum CBS 148.51]
 gi|88180641|gb|EAQ88109.1| hypothetical protein CHGG_04728 [Chaetomium globosum CBS 148.51]
          Length = 1032

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + KPD  + 
Sbjct: 469 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVILYEKPDAIYC 528

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 529 TFGGQTALSVGIQLKDEFEALGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAN 588

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      D  +    L + ++    Q+LIE+ +
Sbjct: 589 NVEEAMRVVKDIGFPVIVRAAYALGGLGSGFANNDAELLD--LCNKAFAASPQVLIERSM 646

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 647 KGW-KEIEYEVVRDCQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 705

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 706 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 755


>gi|300309729|ref|YP_003773821.1| biotin carboxylase [Herbaspirillum seropedicae SmR1]
 gi|300072514|gb|ADJ61913.1| biotin carboxylase protein [Herbaspirillum seropedicae SmR1]
          Length = 459

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFVFIGPRAENIRMMGDKVSAKQAMIRAGVPCVPGSDGALPDN 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
            +  +     I  P +IK   GG   G+ V+  + ++   +  + +     + + +  + 
Sbjct: 142 PKEIVQIARKIGYPVIIKAAGGGGGRGMRVVHTEAALINAVTMTKTEAGAAFGNPEVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++ D       +            K         +P      I +++ 
Sbjct: 202 KYLENPRHVEIQILADEHKQAIWLGERDCSMQRRHQKVIEEAPAPGIPR----KIIEKIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + +  RG    +FL+   + + +++E+N +
Sbjct: 258 ERCAEACRKMNYRGAGTFEFLY--ENEEFYFIEMNTR 292


>gi|261211048|ref|ZP_05925338.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sp. RC341]
 gi|260840023|gb|EEX66623.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sp. RC341]
          Length = 391

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 84/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SPYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 TAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F       AG    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFAGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|257869261|ref|ZP_05648914.1| carbamoyl-phosphate synthase subunit L [Enterococcus gallinarum
           EG2]
 gi|257803425|gb|EEV32247.1| carbamoyl-phosphate synthase subunit L [Enterococcus gallinarum
           EG2]
          Length = 515

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 69/235 (29%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +         +      +G   E+       E   + +         +  DK++
Sbjct: 67  LDI-EDIIRTAKKAGAEAIHPG-YGFLSENLAFAQRCEEEGLIFIGPSTHHLDIFGDKIK 124

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K      G+   P     +      +        P +IK   GG   G+ V   ++   
Sbjct: 125 AKTAAIEAGIQSIPGSDGPVNTIDDVLLFAETHGYPIMIKAALGGGGRGMRVAHDEKEAR 184

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L  +   V         ++      
Sbjct: 185 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDSHGNVVHLFERDCSVQRRHQKV 244

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   +     +++ + A    + +G       +FL        +++E+N +
Sbjct: 245 VEVAPCVSMNAAQREKICQAAVQLMKHVGYINAGTVEFLV--EGDNFYFIEVNPR 297


>gi|225631205|ref|ZP_03787902.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
 gi|225591096|gb|EEH12281.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Muscidifurax uniraptor]
          Length = 691

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 70/212 (33%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +         ++ +K+ +K+     GV V P  +     +
Sbjct: 86  YGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMGKISDV 145

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 146 AHAAQVAKEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEK 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++   +    
Sbjct: 206 YIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVS 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +G       +F+ D   +  ++LE+N +
Sbjct: 266 LAKQVGYFSAGTVEFVVD-KDQNFYFLEVNTR 296


>gi|192290820|ref|YP_001991425.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
 gi|192284569|gb|ACF00950.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris TIE-1]
          Length = 655

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++K   ++P  L  + S            ++   
Sbjct: 149 MVREAERIGFPIMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQSAFGDPTVILERAI 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           L    +          A          ++          P+    + + +++  +A  A 
Sbjct: 209 LQPRHIEIQVFGDRYGAAIHLGERDCSVQRRHQKLIEEAPSPAVSEALREQMGTVAVNAV 268

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG  G    +FL D      +++E+N +
Sbjct: 269 KAIGYEGAGTLEFLLDAEGN-FYFMEMNTR 297


>gi|94969224|ref|YP_591272.1| carbamoyl-phosphate synthase large subunit [Candidatus Koribacter
           versatilis Ellin345]
 gi|166991300|sp|Q1IPK2|CARB_ACIBL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|94551274|gb|ABF41198.1| carbamoyl-phosphate synthase large subunit [Candidatus Koribacter
           versatilis Ellin345]
          Length = 1102

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 101/321 (31%), Gaps = 42/321 (13%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQ---------IDVDRSVGLVLAHLKPDLA--- 54
           G S+E +    SG     AL+  G++V            D + +    +  L P+     
Sbjct: 21  GQSAEFD---YSGAQACKALKAEGYEVVLANSNPATIMTDPEMADRTYIEPLTPEFLEEI 77

Query: 55  -----------------FNVLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDK 93
                               + G    +  V      +L+   +    + + A   + D+
Sbjct: 78  IRIEAAMMPAGAGKFALLPTVGGQTALNLAVDLADSGVLDKYSVILIGAQLGAIKKAEDR 137

Query: 94  MRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +  K  ++  G+ V  S  I   +  ++    I  P V++P       G  +    + + 
Sbjct: 138 LLFKDAMAKIGLDVPRSALINNLKDGLEFSGKIGFPLVLRPSFTLGGSGGGIAYNREELM 197

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L +    +   ++L+E+ V G +     +     D   +     +F    +      +
Sbjct: 198 DLLGKGLDLSPVHEVLLEESVLGWKEYELELMRDLADNVIVICSIENFDPMGVHTGDSIT 257

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                     +          +  +     G S   F  +P + ++  +E+N  P ++  
Sbjct: 258 VAPAQTLSDREYQIMRDAAIKVIREIGVETGGSNIQFATNPENGRMIVIEMN--PRVSRS 315

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
           S     +   G+   ++   +
Sbjct: 316 S--ALASKATGFPIAKIAARL 334



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 68/175 (38%), Gaps = 12/175 (6%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
           + + I  P +++P        +++  + + +   + Q+  ++    +LI+ +  +  E+ 
Sbjct: 713 NANKIGYPVLVRPSYVLGGRAMMICYEQEEVERYMRQAVEYSQERPVLIDHFLEEATEVD 772

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAFLAHQA 237
              + D    V    +   +    E    S +S+ VLP+    +   K ++   F   +A
Sbjct: 773 VDCLSDGEDCVIGGIMQHIE----EAGIHSGDSSCVLPSVDLSEQVLKTIREYTFKLARA 828

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    +       KV+ +E+N +   T     P ++   G    ++   +
Sbjct: 829 LKVIGLMNVQYAIQRE--KVYVIEVNPRASRT----VPYVSKATGVPMAKIAARL 877


>gi|51892342|ref|YP_075033.1| carbamoyl-phosphate synthase large subunit [Symbiobacterium
           thermophilum IAM 14863]
 gi|81826164|sp|Q67Q54|CARB_SYMTH RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|51856031|dbj|BAD40189.1| carbamoyl-phosphate synthase large subunit [Symbiobacterium
           thermophilum IAM 14863]
          Length = 1084

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/301 (12%), Positives = 88/301 (29%), Gaps = 32/301 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     AL + G +V  I+ +                       V  V+A  +P      
Sbjct: 30  GTQACQALREEGLRVVLINSNPATIMTDRHVADRVYIEPITPEFVERVIARERPQGLLPT 89

Query: 58  LHGNFGEDGLVQAIL------ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           L G  G +  +Q           + +  T    +  A    + R+        VP    +
Sbjct: 90  LGGQVGLNMAMQLEEAGVLARYGVRLLGTPLTAIRRAEDRAEFRALMKEIGEPVPESAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 +     +  P +++P       G  +    + +   + +    +   Q L+E+ 
Sbjct: 150 TTPEEALAFGEEVGYPLIVRPAYTLGGTGGGIAHDREEMRDIVTRGLKLSPVTQCLVERS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G +     +               +     +                 + ++ ++  A
Sbjct: 210 LLGWKEIEYEVMRDGAGNAITICSMENIDPVGVHTGDSIVVAPSQTLTDRE-HQILRSAA 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
                A+G  G     F  +P +R+   +E+N  P ++  S     +   GY   ++   
Sbjct: 269 LKIIDALGIEGGCNVQFALNPHAREYMVIEVN--PRVSRSS--ALASKATGYPIAKVAAK 324

Query: 292 M 292
           +
Sbjct: 325 I 325



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 85/297 (28%), Gaps = 33/297 (11%)

Query: 21  ACASA--LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGL 67
           A  +A  L+  G +   I         D D S  L    L  +   NV+   G+      
Sbjct: 574 AVHAAWELKAEGIQSIVINNNPETVSTDFDTSDRLYFEPLTLEDVLNVVEQEGDIEGVIC 633

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----------ILVNRF 116
                  + +    S      L  D  +  +           S                 
Sbjct: 634 QFGGQTAINLAVPLSRAGVRVLGTDIDQMDRAEDRRRFDQLLSDLSIPRPPGGTATSVEE 693

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +++P        + ++  +  +   + ++ + +    +L+++Y  G E
Sbjct: 694 AVAVARRIGYPVLVRPSFVLGGRAMEIVHDEAELRAYMREAIAVSSDRPVLVDRYFLGKE 753

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +        S      V       +          LA  
Sbjct: 754 VEVDCVSDGEQVIIAGIMEHLERAGVHSGDSIAVYPTVTLTHRQRETIVAYSTRLALA-- 811

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +  +G+    ++      +++ +E+N +   T     P +    G    ++   ++
Sbjct: 812 -LQVKGLVNIQYVI--HGGEIYVIEVNPRSSRT----VPFLTKVTGLELAKVATQVI 861


>gi|299148157|ref|ZP_07041219.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_23]
 gi|298512918|gb|EFI36805.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_23]
          Length = 1073

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICADEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELTL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|294784769|ref|ZP_06750057.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
 gi|294486483|gb|EFG33845.1| conserved hypothetical protein [Fusobacterium sp. 3_1_27]
          Length = 312

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/286 (15%), Positives = 96/286 (33%), Gaps = 39/286 (13%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQI---------DV-DRSVGLVLAHLK 50
           +AV+ G           SG+     L+  G+K   I         ++ D+S+ + L   +
Sbjct: 7   IAVIAG----------ISGEVIVKELKKLGYKAFVISGRKEDSGMNISDKSLVVDLREKE 56

Query: 51  ---PDLAFNVLH----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
               +L  N +     G               +         +S ++ DK   K+ +   
Sbjct: 57  LIYNELVKNEIDKVILGTGHVLAFKLIDFLAGKGIKVSVNPKSSLIAKDKFAYKEELVKN 116

Query: 104 GVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           G+     I+++     +       I  P V+K      +         + +   +     
Sbjct: 117 GILTPKYIVIDLDDKYNIQEILDKIGCPCVVKSTID--TTYPKKANTKEELEKHIDTIRK 174

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                 +++EQ+++GI+ T  V  +       +    S   + +L+    +       K+
Sbjct: 175 T--NSSIVVEQFIEGIDTTVPVYSNPKETKAILVSYYSKADACKLEGFGNDLIK---EKL 229

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ + + R +    +     G++R D + D    K + LE N  
Sbjct: 230 SKEVEERLLRFSEDVIRKTNIIGMARLDIIVD-KDEKFYVLECNSV 274


>gi|293369511|ref|ZP_06616090.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CMC 3f]
 gi|292635396|gb|EFF53909.1| carbamoyl-phosphate synthase, large subunit [Bacteroides ovatus SD
           CMC 3f]
          Length = 1073

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICADEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELTL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|260171993|ref|ZP_05758405.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           D2]
 gi|315920305|ref|ZP_07916545.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313694180|gb|EFS31015.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1073

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICADEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELTL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|160882404|ref|ZP_02063407.1| hypothetical protein BACOVA_00353 [Bacteroides ovatus ATCC 8483]
 gi|237719075|ref|ZP_04549556.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           2_2_4]
 gi|156112217|gb|EDO13962.1| hypothetical protein BACOVA_00353 [Bacteroides ovatus ATCC 8483]
 gi|229451454|gb|EEO57245.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           2_2_4]
          Length = 1073

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALKEEGISSVLVNPNIATIQTSEGIADKVYFLPVNTYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   Q IL+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGAELYTQGILDKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEMKTPVSQA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   ++      L  SS+    Q+L+E+
Sbjct: 147 VENMEDAIAAARRIGYPVMVRSAYALGGLGSGICADEEEFLK--LAESSFAFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +    ++   ++ L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLDDKELTL-LKEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY   
Sbjct: 264 STKCIRHLGIVGECNIQYAFNSDTDDYRVIEVNAR--LSRSS--ALASKATGYPLA 315


>gi|296332183|ref|ZP_06874646.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305672923|ref|YP_003864594.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. spizizenii str. W23]
 gi|296150675|gb|EFG91561.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. spizizenii ATCC 6633]
 gi|305411166|gb|ADM36284.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. spizizenii str. W23]
          Length = 384

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/269 (13%), Positives = 77/269 (28%), Gaps = 26/269 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDV--DRSVGLVLAHLKPDLAFNVL 58
           +AV     S E           A            +D+     +  ++   KPDL    +
Sbjct: 31  VAV----DSYEHAP----AMQVA-------HNSYVVDMLDREQIRTIIEKEKPDLIVPEV 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ L         IP   +  L       +  + + +                 +
Sbjct: 76  EAIATDELLKLEEEGFHVIPNARAAKLTMDREGIRRLAAETLGLAT-AGYEFANTYDEFV 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIEL 177
            +   I  P V+KPL   S  G  V + +  +      +          +I +     E 
Sbjct: 135 QAAAQIGFPCVVKPLMSSSGKGQSVCRSEADLESCWETAMEGGRVKNGRVIVEEFIPFES 194

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   +++ T    P         +          P  +     +E + +A      
Sbjct: 195 EITLLTVRAVNGTTFCEPIGHV-----QKDGDYIESWQPHDMTEQQMEEAKHIAKAITDE 249

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +        KV++ E++ +P
Sbjct: 250 LGGYGLFGVELFL--AKDKVYFSEVSPRP 276


>gi|323527387|ref|YP_004229540.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1001]
 gi|323384389|gb|ADX56480.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1001]
          Length = 455

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDDPKEVVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSFKNAIWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|284041067|ref|YP_003390997.1| carbamoyl-phosphate synthase, large subunit [Spirosoma linguale DSM
           74]
 gi|283820360|gb|ADB42198.1| carbamoyl-phosphate synthase, large subunit [Spirosoma linguale DSM
           74]
          Length = 958

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/306 (13%), Positives = 87/306 (28%), Gaps = 36/306 (11%)

Query: 19  GKACASALEDAGFKVSQI---------DV------------DRSVGLVLAH-----LKPD 52
           G   A ++ D G +VS I         D              +S+  +L          D
Sbjct: 30  GSQAARSIRDEGIEVSLINSNPATIMTDPINADYVYLLPLEKKSIVEILKKHQEMGKPID 89

Query: 53  LAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVP 106
                + G    +  +        +  ++      I A   + D+ + + ++     GV 
Sbjct: 90  AVLPTMGGQTALNLAIDCDKAGIWKKYDVQIIGVDIKAIETTEDREKFRLLMLQLGAGVC 149

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              +        +    I  P VI+P       G   + + +     L      +   ++
Sbjct: 150 KGRTARSFLEGKEIAQEIGFPLVIRPSFTLGGTGGGFVNRPEDFDKALTAGLHASPVHEV 209

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           L+EQ V G +     +   +     I     +F    +      +             K 
Sbjct: 210 LVEQSVMGWKEYELELLRDNNGNFVIICSIENFDPMGIHTGDSITVAPAMTLPDTLYQKM 269

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                 +        G     F  +P +  +  +E+N  P ++  S     +   GY   
Sbjct: 270 RDLAITVMGGIGQFAGGCNIQFSVNPQTDDIIVIEVN--PRVSRSS--ALASKATGYPIA 325

Query: 287 ELLLWM 292
           ++   M
Sbjct: 326 KIAAKM 331



 Score = 42.9 bits (99), Expect = 0.049,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 100/309 (32%), Gaps = 43/309 (13%)

Query: 1   MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQI---------DVD------- 39
           + VL  G    G   E + S        +A ++AG++   I         D D       
Sbjct: 579 IVVLGSGPNRIGQGIEFDYSCV--HGVLAA-KEAGYETIMINCNPETVSTDPDIADKLYF 635

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  V  ++ H +P+     L G       +   L    I    +   A  L+ D+ 
Sbjct: 636 EPVFWEHVHAIIMHEQPEGVIVQLGGQ--TALKMAEKLTRYGIKIIGTSWEALDLAEDRG 693

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +   ++    +P      V       +    +  P +++P        + ++  +  +  
Sbjct: 694 QFSSLLRDLEIPYPKFGTVRESEGALELSRELGFPLLVRPSYVLGGQNMKIVINENELEQ 753

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +++       + +L++ +++          DA  D  ++ +     +       S +S 
Sbjct: 754 HVMKILQDIPDNNILLDHFLEN---AIEAEADAICDGEDVYIIGIMEHIEPAGIHSGDSY 810

Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
            +LP     + + ++++        A+   G+    F     +  V+ +E N +   T  
Sbjct: 811 ALLPTFDLSENVIRQIEEHTKKIAVALKTVGLINIQFAI--KNEVVYIIEANPRASRT-- 866

Query: 272 SIFPEMAAY 280
              P +   
Sbjct: 867 --VPFICKA 873


>gi|229104509|ref|ZP_04235176.1| Pyruvate carboxylase [Bacillus cereus Rock3-28]
 gi|228678951|gb|EEL33161.1| Pyruvate carboxylase [Bacillus cereus Rock3-28]
          Length = 1148

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSEHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     I       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPIDSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLFERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRRRICEAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|192358837|ref|YP_001983200.1| acetyl-CoA carboxylase, biotin carboxylase [Cellvibrio japonicus
           Ueda107]
 gi|190685002|gb|ACE82680.1| acetyl-CoA carboxylase, biotin carboxylase [Cellvibrio japonicus
           Ueda107]
          Length = 446

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLK--------PDLAFN----------- 56
                 A ++ G K   +   +DR +  V LA           P    N           
Sbjct: 14  ALRVLRACKELGIKTVAVHSQIDRDLKHVRLADESVCIGPNPSPKSYLNIPAIIAAMEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      ++     +         +  DK+ + + +   GVP  P 
Sbjct: 74  DSQAVHPGYGFLAENADFAERVQKSGFTFIGPDPDVIRMMGDKVEAIKAMKKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                       +     I  P +IK   GG   G+ V+  + ++   +  +       +
Sbjct: 134 SDGPLPEDPEECLKIAKRIGYPVIIKAAAGGGGRGMRVVHTEAALINSIHVTQGEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             G   + +   +   +   V+ D   +   +            K         +P    
Sbjct: 194 GDGTVYMEKFLQNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVLEEAPAPGIPQ--- 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ +        A   IG +G    +FL+     + +++E+N +
Sbjct: 251 -EVREATYASCVKACIDIGYKGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|85373447|ref|YP_457509.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter
           litoralis HTCC2594]
 gi|84786530|gb|ABC62712.1| AccC, acetyl-CoA carboxylase, biotin carboxylase [Erythrobacter
           litoralis HTCC2594]
          Length = 449

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 67/212 (31%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I+E  +I +            DK+ +KQ     G+P+ P     +   
Sbjct: 83  YGFLSENAKFAEIVEAHDIKWIGPKPEHIRTMGDKVAAKQTAGELGLPLVPGSEGAVSDY 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   G+ V    + +   + Q+ S           Y++ 
Sbjct: 143 DEARKIAAEIGYPVIIKAASGGGGRGMKVCDSAEKLEGLMKQAGSEAKAAFGDATVYIEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +          +          L+          P+ +        +  +   
Sbjct: 203 YLGNPRHIEFQVFGDGNGSAIHLGERDCSLQRRHQKVLEEAPSPVLDSAERHRMGEICAD 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +  RG    +FL+     + +++E+N +
Sbjct: 263 AMRKMAYRGAGTIEFLW--EGGEFYFIEMNTR 292


>gi|533532|gb|AAA74996.1| carbamoyl phosphate synthetase (glutamine) large subunit [Neisseria
           gonorrhoeae]
          Length = 1079

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/266 (15%), Positives = 77/266 (28%), Gaps = 27/266 (10%)

Query: 18  SGKACASALEDAGFKVSQI--------------DVD-------RSVGLVLAHLKPDLAFN 56
           SG     AL + G+KV  +              DV        ++V  ++A  +PD    
Sbjct: 29  SGAQACKALREEGYKVILVNSNPATIMTDPEMADVTYIEPIMWQTVEKIIAKERPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G        D     +L   ++    +   A   + D  R K+ +   G+    S+ 
Sbjct: 89  TMGGTDRLNCALDLAGNGVLAKYDVELIGATEDAIDKAEDPGRFKEAMEKIGLSCPKSLF 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+P       G  +            +    +   +LLIEQ
Sbjct: 149 CHTMNEALAAQEQVGFPTLIRPSFTMGGSGGGIAYNKDEFLAICERGFDASPTHELLIEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   I     +F    +      +          +        
Sbjct: 209 SVLGWKEYEMEVVRDKADNCIIICSIENFDPMGVHTGDSITVAPAETLTDKEYQIMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK 256
             +  +     G S   F  +P  R+
Sbjct: 269 LAVLREIGVDTGGSNVQFAVNPEKRR 294



 Score = 43.3 bits (100), Expect = 0.041,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 95/286 (33%), Gaps = 33/286 (11%)

Query: 21  ACASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAF----------NVLH 59
           +  +AL   ++GF+   +         D D S  L    L  +              ++H
Sbjct: 579 SVHAALPLRESGFETIMVNCNPETVSTDFDTSDRLYFEPLTLEDVLEIVRTENPWGVIVH 638

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM- 118
                   +   L    +    +   +   + D+ R ++V++  G+   P+ + +     
Sbjct: 639 YGGQTPLKLANALVENGVNIIGTSADSIDAAEDRERFQKVLNDLGLRQPPNRIAHNEEEA 698

Query: 119 -DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
                 I  P V++P        + ++   +++   + +    +    +L++ +  + IE
Sbjct: 699 LVKAEEIGYPLVVRPSYVLGGPAMQIVHSAEALQKYMREPVQVSEDSPVLLDFFLNNAIE 758

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    V    +   +           +   + P  +  +I  E++R       
Sbjct: 759 VDVDCVSDGKDVVIGGIMQHVEQAGIHSG---DSGCSLPPYSLSEEIQDEIRRQTKAMAY 815

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           A+G  G+    F        VF LE+N +         P ++   G
Sbjct: 816 ALGLVGLMNVQFAV--QDAVVFVLEVNPR----ATRTVPFVSKATG 855


>gi|71405133|ref|XP_805210.1| glutamine dependent carbamoyl-phosphate synthase [Trypanosoma cruzi
           strain CL Brener]
 gi|70868530|gb|EAN83359.1| glutamine dependent carbamoyl-phosphate synthase, putative
           [Trypanosoma cruzi]
          Length = 1253

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 97/314 (30%), Gaps = 36/314 (11%)

Query: 2   AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
           AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 346 AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGKKVILINYNPETVSTDYDECDRLYFE 402

Query: 40  ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                +V  +L   +       L G   ++  ++     L I  T    +  A +  K  
Sbjct: 403 EVSEETVLDILLKERIQGVVISLGGQIVQNMALRLKQHGLPILGTDPVNVDKAENRHKFS 462

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                     P            +    +  P +++P    S   + VI     I   L 
Sbjct: 463 KMCDELGVLQPEWILSTSVEQVHEFCKQVGFPTLVRPSYVLSGSAMAVIASAADINRYLE 522

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           +++  +    +++ +Y +G           +     +     +       +S   +  + 
Sbjct: 523 EAALVSGEHPVVVSKYYEGAMEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 580

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P     ++ K +     L  + +   G     FLF    +++  +E N++   +  S  P
Sbjct: 581 PQNTEKEVMKRIYNTTALIAEELDVVGPMNIQFLFT-KDKQLRVIEANIR---SSRS-VP 635

Query: 276 EMAAYAGYSFRELL 289
            ++   G SF  ++
Sbjct: 636 FVSKTLGISFPAVM 649


>gi|57505848|ref|ZP_00371773.1| biotin carboxylase Cj1290c [Campylobacter upsaliensis RM3195]
 gi|57015878|gb|EAL52667.1| biotin carboxylase Cj1290c [Campylobacter upsaliensis RM3195]
          Length = 443

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     + +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNLKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V+  ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKKIGYPVILKAAAGGGGRGMRVVDNEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFL 233
                  +    +  +   V         ++          PA +  +  +  +   A  
Sbjct: 203 YIQNPRHIEVQVVGDSFGNVIHIGERDCSMQRRHQKLIEESPAILLDEKTRARLHETAVK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIELMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|313885063|ref|ZP_07818815.1| pyruvate carboxylase [Eremococcus coleocola ACS-139-V-Col8]
 gi|312619754|gb|EFR31191.1| pyruvate carboxylase [Eremococcus coleocola ACS-139-V-Col8]
          Length = 1164

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/285 (11%), Positives = 83/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   +   +G + A+L  +   N    
Sbjct: 16  ATRIIRASHELGIETIAIYSKEDVGALHRQKADYSYLIGEDLGPIEAYLDIEGIINLAKE 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +    +    +  +K ++++   +  +PV P
Sbjct: 76  KGVDAIHPGYGFLSENQEFAQRCAEEGIIFVGPQVKHLQMFGNKTQARETALAADLPVIP 135

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
                +               P +IK + GG   G+ ++++   +     +      +S+
Sbjct: 136 GSQGGVASLSEVKSFVQEHGYPIMIKAVNGGGGKGMRIVRQADELEQAYDRAKSEAKTSF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
                 +     +   +   ++GD   ++  +            K   +  +  L   + 
Sbjct: 196 GDDSIYVERYVENPKHIEVQIIGDQHGNLVHLFERDCSIQRRHQKVVEIAPSFNLSPSMR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +     A      IG       +FL        +++E+N +
Sbjct: 256 DKLTR----AALQLMNHIGYENAGTVEFLV--AGDDYYFIEVNPR 294


>gi|308446210|ref|XP_003087122.1| hypothetical protein CRE_06282 [Caenorhabditis remanei]
 gi|308261317|gb|EFP05270.1| hypothetical protein CRE_06282 [Caenorhabditis remanei]
          Length = 371

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 81/268 (30%), Gaps = 29/268 (10%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 77  VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPITLEDVLEIVRTEKPKGIIVQY 136

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G                I  T    +  A   ++ +      +   P    +      M
Sbjct: 137 GGQTPLKLARALEEAGAPIIGTSPDAIDRAEDRERFQQMIQRLNLRQPSNSIVKSAEEGM 196

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIEL 177
                +  P V++P        + ++  D  +   L  +   ++   +L++ ++D   E+
Sbjct: 197 AEASKVGYPLVVRPSYVLGGRAMEIVYNDDELKRYLRDAVQASNEAPVLLDHFLDDATEV 256

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D    V    +   +           ++  + P  +  +I+ E++R      + 
Sbjct: 257 DVDCVSDGKDVVIGGIMQHIEQAGIHSG---DSACSIPPYSLSTEIHDEMRRQTVAMAKE 313

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G  G+    F        V+ LE+N +
Sbjct: 314 LGVIGLMNVQFAV--KGNDVYILEVNPR 339


>gi|269958656|ref|YP_003328443.1| propionyl-CoA carboxylase alpha chain [Anaplasma centrale str.
           Israel]
 gi|269848485|gb|ACZ49129.1| propionyl-CoA carboxylase alpha chain [Anaplasma centrale str.
           Israel]
          Length = 659

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/275 (13%), Positives = 86/275 (31%), Gaps = 25/275 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ + +  V      D      +G   E+      L    I +      +  +  DK+ 
Sbjct: 61  LDIGK-ICTVAEETGVDAVHPG-YGFLSENAEFPDRLSECGIGFIGPAPSSMRMMSDKVV 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK+V    GV V P  +    +      I+     P +IK   GG   G+ V+K  + + 
Sbjct: 119 SKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGKGMRVVKSAKEME 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              + +++           +++        +    +      V         ++ ++   
Sbjct: 179 QAFVSATNEASKSFSDGRIFIEKYIEFPRHIEVQIVADKHGNVVCLGERECSIQRNNQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----Q 265
               P+       ++          + +    +   +F+ D      ++LE+N       
Sbjct: 239 IEETPSPFLDKKTRQSMYAQCVNLVKRVNYFSVGTVEFVVDAEKN-FYFLEMNTRLQVEH 297

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P      +   +         +L+  M++ A   R
Sbjct: 298 P---VTELVTRI---------DLVEEMIKIADGER 320


>gi|260590746|ref|ZP_05856204.1| carbamoyl-phosphate synthase, large subunit [Prevotella veroralis
           F0319]
 gi|260537232|gb|EEX19849.1| carbamoyl-phosphate synthase, large subunit [Prevotella veroralis
           F0319]
          Length = 1074

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELERTGVLKKYNVRVLGTPVAAIMNTEDRELFVERLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      ++ +    L   +++   Q+L+E+
Sbjct: 148 CEDIVQARKAAKTLGYPVIVRAAYALGGLGSGFADNEEELNT--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDQYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIIGECNVQYAFDPQSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|169342362|ref|ZP_02863428.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           C str. JGS1495]
 gi|169299482|gb|EDS81546.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium perfringens
           C str. JGS1495]
          Length = 450

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 77/217 (35%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      A  L  +K  +++++    VPV P    
Sbjct: 77  AIHPGFGFLSENPRFAKMCEECNIEFIGPNWRAIELMGNKAMAREIMKKADVPVVPGYEG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P ++K   GG   GI ++ K++    +   + S    +    +
Sbjct: 137 EIESPEFALKIAKKIGFPVIVKASSGGGGKGIRIVYKEEDFISNYNTAKSEAQANFGDDK 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L                 +  +       P+ I   +   ++ 
Sbjct: 197 IYIERFVENPKHIEVQLLCDKHGNALHLFERDCSAQRKNQKVLEEAPSSILSGEQRDKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A +A+    +   +FL D  + + +++E+N +
Sbjct: 257 KIAVKAAKAVNYSNVGTIEFLLD-KNGEFYFMEMNTR 292


>gi|330504644|ref|YP_004381513.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           mendocina NK-01]
 gi|328918930|gb|AEB59761.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           mendocina NK-01]
          Length = 393

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 37/309 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                +D     ++  V+   +P      +
Sbjct: 24  GKEVVIELQRLGCEVIGVDRYANAPAMQVAHRSHVIDMLDGAALRAVIEKERPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELEAEGFNVVPTARAAQLTMNREGIRRLAAEELGLPT-SPYHFSDTFEDYT 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V+K D  +        +   G        V+G    
Sbjct: 143 AAVKSVGYPCVVKPIMSSSGKGQSVLKSDADLQRA--WDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V   A           + +        P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHAAGTSFCAPIGHRQENGDYQESWQPQPMSPKALAESERVALAVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYSFRELL 289
           G RG+   +        +V++ E++ +P  T         +S F   A    G     ++
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRPHDTGLVTLISQELSEFALHARAILGLPIP-VI 315

Query: 290 LWMVEDASC 298
             M   AS 
Sbjct: 316 RQMGPSASA 324


>gi|328876428|gb|EGG24791.1| propionyl-CoA carboxylase [Dictyostelium fasciculatum]
          Length = 699

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 48/319 (15%), Positives = 98/319 (30%), Gaps = 56/319 (17%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNVL------ 58
                ++ G K   I  D D+    VL                 L  D     +      
Sbjct: 48  VFKTCKEMGIKTVAIHSDADKHARHVLEADEAVCVGPAPTSQSYLNIDNILEAIKSTGAQ 107

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                +G   E+      LE + + +      A     DK+ SK++  + GV V P  + 
Sbjct: 108 AVHPGYGFLSENSRFVKELEKIGVTFIGPNSYAMHALGDKIESKKIAKAAGVSVIPGFIG 167

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
               ++      + I  P ++K   GG   G+ +   D+ + +    S       +    
Sbjct: 168 EVDGIEQVIKIANEIGYPVMVKASAGGGGKGMRIAWNDEDVKIGYRLSKQEAKSSFGDDR 227

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            L+ +    G  +   V+ D    +       S       + +           +  +  
Sbjct: 228 MLIEKYIDRGRHIEIQVLSDGETALYFPERECSIQ-----RRNQKVVEEAPSPFLDDETR 282

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---A 281
             + + A    +A+G +     +FL D      ++LE+N +              +    
Sbjct: 283 TAMGKQAVALCKAVGYKSAGTVEFLVDEKKN-FYFLEMNTR----------LQVEHPITE 331

Query: 282 GYSFRELLLWMVEDASCLR 300
             + ++L+  M+  A   R
Sbjct: 332 EITGQDLVAHMIRIAYGER 350


>gi|315053309|ref|XP_003176028.1| protein kinase subdomain-containing protein [Arthroderma gypseum
           CBS 118893]
 gi|311337874|gb|EFQ97076.1| protein kinase subdomain-containing protein [Arthroderma gypseum
           CBS 118893]
          Length = 2267

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD  + 
Sbjct: 510 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKRERPDAIYV 569

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 570 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEAIGEKCAKSASAS 629

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 630 NLEEAMEAVKGIGFPVIVRAAYALGGLGSGFAENDDQLRD--LCTKAFAASPQVLIERSM 687

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 688 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 746

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 747 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 796


>gi|330927116|ref|XP_003301749.1| hypothetical protein PTT_13325 [Pyrenophora teres f. teres 0-1]
 gi|311323299|gb|EFQ90155.1| hypothetical protein PTT_13325 [Pyrenophora teres f. teres 0-1]
          Length = 657

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 78/234 (33%), Gaps = 9/234 (3%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D+D  +  ++   + D                + + E         G    + + DK+++
Sbjct: 64  DID-QLIKIIKQHQIDAVHPGYGFLSESAVFSKRVWEEARAIVVGPGWSILSSTGDKLKA 122

Query: 97  KQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +Q+   C +P+ P++      +         +  P ++K + GG   GI ++     +  
Sbjct: 123 RQLAEECNIPLTPALPHPTTNLPTIAAFATRVGYPIMLKAVDGGGGRGIRLVHSLTQLAS 182

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            L +    +   Q+  E+   G       +    +      V         ++       
Sbjct: 183 SLHRVIEESPSKQIFAEKAAVG---GFRHIEVQIIGDGTGNVTHLWERECSIQRRYQKVI 239

Query: 213 HVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            V P+ +    +   V   A      I    +   +FL +P +   F+LE+N +
Sbjct: 240 EVAPSGVVDRGLVARVVGDAVRMAGHISYFSLGTFEFLVNPSTGAYFFLEVNPR 293


>gi|270295724|ref|ZP_06201924.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D20]
 gi|270273128|gb|EFA18990.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. D20]
          Length = 1075

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDR-SVGLVLAHLKPDLAFN 56
           SG     AL + G                     +V  + V    V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIGSVLVNPNIATIQTSEGIADQVYFLPVTPYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     IL+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYQNGILQKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEDALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFTFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|160890588|ref|ZP_02071591.1| hypothetical protein BACUNI_03031 [Bacteroides uniformis ATCC 8492]
 gi|317479873|ref|ZP_07938990.1| carbamoyl-phosphate synthase [Bacteroides sp. 4_1_36]
 gi|156859587|gb|EDO53018.1| hypothetical protein BACUNI_03031 [Bacteroides uniformis ATCC 8492]
 gi|316903947|gb|EFV25784.1| carbamoyl-phosphate synthase [Bacteroides sp. 4_1_36]
          Length = 1075

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDR-SVGLVLAHLKPDLAFN 56
           SG     AL + G                     +V  + V    V  ++   +PD    
Sbjct: 27  SGSQALKALREEGIGSVLVNPNIATIQTSEGIADQVYFLPVTPYFVEEIIKKERPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     IL+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYQNGILQKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEDALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFIK--LAESSFTFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|331270157|ref|YP_004396649.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
 gi|329126707|gb|AEB76652.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           BKT015925]
          Length = 449

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 87/278 (31%), Gaps = 36/278 (12%)

Query: 22  CASALEDAGFKVSQI--DVDRS------------------------VGLVLAHLKPDLAF 55
              A  + G +   I  D+D+                         +  ++   K     
Sbjct: 17  IIRACRELGIRTVAIYSDIDKDSMHVKFADETVCIGKASAKESYLNIQNIIMAAKLKGV- 75

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
             +H   G   E+     I    +I +            +K ++++++ + GVPV P   
Sbjct: 76  EAIHPGYGFLSENSDFARICNEYDIKFIGPSADTIDSLGNKSKAREIMINAGVPVIPGSN 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +      +    +I  P ++K   GG   GI +   +  +      + +         
Sbjct: 136 GAVQDEEDALKQAEMIGYPVMVKASAGGGGRGIRIANSNDELINVFNMAKTEAKNAFGDD 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L      V         ++          P+ I  +  ++  
Sbjct: 196 TMYIEKFIENPRHIEFQILGDNYGNVIHLGERECSIQRRHQKVIEESPSVIMDEETRKKM 255

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +A  A +A+  +     +FL D  + K +++E+N +
Sbjct: 256 GEVAIRAAKAVNYKNAGTIEFLLD-KNGKFYFMEMNTR 292


>gi|302898963|ref|XP_003047952.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
 gi|256728884|gb|EEU42239.1| hypothetical protein NECHADRAFT_79968 [Nectria haematococca mpVI
           77-13-4]
          Length = 1841

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/149 (15%), Positives = 58/149 (38%), Gaps = 9/149 (6%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIE 176
             I  P ++K   GG  +G+   K  +S+           ++++ +G   L         
Sbjct: 791 QKIGFPLMLKSTAGGGGIGLSHCKDVESLATTFESVRRQATANFGNGGVFLERFVQRARH 850

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   ++GD +  V               K    +   ++P     ++ ++++  A     
Sbjct: 851 VEVQILGDGTGKVIAAGERDCSLQRRHQKVVEESPAIMVPV----EVREKMKAAAASLAS 906

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  R +   +F++D  + + F+LE+N +
Sbjct: 907 SVKYRNVGTVEFIYDIDTEEFFFLEVNTR 935


>gi|238879069|gb|EEQ42707.1| urea amidolyase [Candida albicans WO-1]
          Length = 1813

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 87/318 (27%), Gaps = 59/318 (18%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
               L+  G K   +  D D+     L     D+A   LHG    +  +     +     
Sbjct: 630 IIKTLKKLGVKSIAVYSDPDKYAQHSLMA---DVAIP-LHGTTAAETYINIEKVIKAAKE 685

Query: 80  THSGIL---ASALSMDKMRSKQVVSSCGVPVCPS-------------------------- 110
           + +  +      LS +   S +      V V PS                          
Sbjct: 686 SGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVP 745

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +   +        +  P ++K   GG  +G+  +  ++ I                
Sbjct: 746 GSGLVKDAKEARAIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKSYFG 805

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +++        +    L                L+  +       PA    +  + 
Sbjct: 806 DSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQKIIEETPAPNLPEETRN 865

Query: 227 VQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
             R A      ++  +     ++++DP   + ++LE+N +              +     
Sbjct: 866 KMRKAAESLGSSMKYKCAGTVEYIYDPKRDEFYFLEVNAR----------LQVEHPITEM 915

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+ WM+  A+
Sbjct: 916 VTGL---DLVEWMLLIAA 930


>gi|229493008|ref|ZP_04386803.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus
           erythropolis SK121]
 gi|229320038|gb|EEN85864.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus
           erythropolis SK121]
          Length = 411

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 72/269 (26%), Gaps = 23/269 (8%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D   D                   ++  V+   KP      +
Sbjct: 37  GKEVVIALQRLGVEVIAVDRYPDAPGHQVAHRAHTVDMTDPEALLAVIELEKPHFVVPEI 96

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +   +        +  T      +       R                       
Sbjct: 97  EAIATDALALVEERGGAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLAEVQ 156

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   I  P VIKP+   S  G   ++  + +      + +        +I +     + 
Sbjct: 157 AATDRIGFPCVIKPVMSSSGKGQSTVRSAEDLDAAWDYAMAGGRVNHGRVIVEGFVDFDY 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +   ++  +             L+ +        P ++        + +A     A
Sbjct: 217 EITQLTVRAVGESGQVETSFCEPIGHLQEAGDYIESWQPQQMSAVALASARDVAEKVTTA 276

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G RGI   +         VF+ E++ +P
Sbjct: 277 LGGRGIFGVELFV--KGDDVFFSEVSPRP 303


>gi|227823796|ref|YP_002827769.1| pyruvate carboxylase [Sinorhizobium fredii NGR234]
 gi|227342798|gb|ACP27016.1| pyruvate carboxylase [Sinorhizobium fredii NGR234]
          Length = 1151

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +     
Sbjct: 156 AEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERAR 215

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++  +       PA    +    E+   +    +A  
Sbjct: 216 HVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRAELADYSLKIAEATN 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L D  + K +++E+N +
Sbjct: 276 YIGAGTVEYLMDSDTGKFYFIEVNPR 301


>gi|227537657|ref|ZP_03967706.1| carbamoyl-phosphate synthase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|227242488|gb|EEI92503.1| carbamoyl-phosphate synthase [Sphingobacterium spiritivorum ATCC
           33300]
          Length = 938

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/265 (12%), Positives = 81/265 (30%), Gaps = 11/265 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         V  ++   KP+     L G        +     ++I  T    + 
Sbjct: 611 DKLYFEPVFW---EHVREIIELEKPEGVIVQLGGQTALKMAEKLEAIGVKIIGTSFQDMD 667

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A    +            P           +   + +  P +++P       G+ ++  
Sbjct: 668 LAEDRGRFSDLLKSLDIPYPKYGVAESAEEAIVVANQVGYPVLVRPSYVLGGQGMSIVIN 727

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           D+ +   ++       G+++LI+ ++D              +   I             +
Sbjct: 728 DEDLEKAVVNLLKNLPGNRVLIDHFLD-RAEEAESDSICDGEEVHIIGMMEHIEP-AGIH 785

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  +S  + P  +  ++  +++  +    +A+  +G+    F        VF +E N + 
Sbjct: 786 SGDSSAVLPPFSLSQNVQDKMEEYSKKLAKALNVKGLLNIQFAV--KDENVFVIEANPRA 843

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLW 291
             T     P +A      +  +   
Sbjct: 844 SRT----VPFIAKAYDVPYINIATK 864



 Score = 42.2 bits (97), Expect = 0.10,   Method: Composition-based stats.
 Identities = 41/262 (15%), Positives = 80/262 (30%), Gaps = 27/262 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG   A +L++ G +VS I+ +                      S+  VL     D    
Sbjct: 29  SGSQAALSLKEEGIEVSIINSNPATIMTDKVVADNVYLLPLTCESIEEVLQKHNIDAVLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
            + G    +  +    + I E  +I      + A   + ++   +Q++   GV V  S  
Sbjct: 89  TMGGQTALNLCIEASERGIWEKYDIKVIGVDVAAIEKTENREAFRQLMVDIGVGVATSKI 148

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                   ++   I  P VI+P    +  G   + K +     L +    +   ++L+EQ
Sbjct: 149 ANSFLEGKEAAQEIGYPLVIRPSYTLAGTGGGFVHKKEDFDAALNRGLHASPTHEVLVEQ 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D   I     +F    +      +                 + 
Sbjct: 209 AVLGWKEFELELLRDANDNVIIICTIENFDPMGIHTGDSITVAPAMTLSDRCYQDMRNQA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDP 252
             +        G     F  +P
Sbjct: 269 IKMMRSIGNFAGGCNVQFSVNP 290


>gi|83645016|ref|YP_433451.1| phosphoribosylglycinamide formyltransferase 2 [Hahella chejuensis
           KCTC 2396]
 gi|123739969|sp|Q2SJZ8|PURT_HAHCH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|83633059|gb|ABC29026.1| phosphoribosylglycinamide formyltransferase 2 [Hahella chejuensis
           KCTC 2396]
          Length = 400

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 75/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                +D    + +  ++   +PD     +
Sbjct: 24  GKEVAIELQRFGVEVIAVDRYSNAPAMQVAHRAHVIDMLDPKQLRALIELERPDFIIPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 + L         +P   +  L       +  + + +                  
Sbjct: 84  EAIATAELLELERSGFNVVPSARAANLTMNREGIRRLAAEELGLST-SPYAFAADFESFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P V+KP+   S  G  VI  D  +        +   G     +  V+G    
Sbjct: 143 DAVSSIGVPCVVKPIMSSSGKGQSVIHSDGDVERA--WRYAQEGGRAGQGKVIVEG--FV 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L +              L+          P  +        Q +A     A+
Sbjct: 199 DFDYEVTLLTLRHAGGTSFCDPIGHLQVDGDYRVSWQPHPMSAIALGAAQDIAEKVTVAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  GI   +        +V++ E++ +P
Sbjct: 259 GGCGIFGVELFV--KGDEVYFSEVSPRP 284


>gi|34497217|ref|NP_901432.1| acyl-CoA carboxylase subunit [Chromobacterium violaceum ATCC 12472]
 gi|34103073|gb|AAQ59436.1| probable acyl-coA carboxylase subunit [Chromobacterium violaceum
           ATCC 12472]
          Length = 651

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 22/153 (14%), Positives = 42/153 (27%), Gaps = 9/153 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYV 172
                 I  P +IK   GG   G+ ++++       L                L+ +   
Sbjct: 145 QQQADAIGYPVLIKASAGGGGKGMRIVEQAGDFSAALASCQREARASFGDDKVLVEKYLT 204

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
               +   V  D       +            K         LP      + +     A 
Sbjct: 205 RPRHVEIQVFADKLGGCVYLFERDCSVQRRHQKVLEEAPAPHLPQATREAMGQAAVAAAR 264

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 G  G    +F+ D  + K +++E+N +
Sbjct: 265 AV----GYVGAGTVEFIMDVDTGKFYFMEMNTR 293


>gi|4185560|gb|AAD09129.1| PyrABCN [Emericella nidulans]
          Length = 2275

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 502 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 561

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 562 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAS 621

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        I  P +++       LG         +    L + ++    Q+LIE+ +
Sbjct: 622 SLEEALQVVESIGFPVIVRAAYALGGLGSGFADNLDELKD--LCAKAFAASPQVLIERSM 679

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 680 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 738

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 739 NVIRHLGVVGECNIQYALNPYSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 788


>gi|68484977|ref|XP_713627.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|68485048|ref|XP_713590.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|46435095|gb|EAK94485.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
 gi|46435133|gb|EAK94522.1| likely multifunctional urea amidolyase [Candida albicans SC5314]
          Length = 1813

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/318 (12%), Positives = 87/318 (27%), Gaps = 59/318 (18%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
               L+  G K   +  D D+     L     D+A   LHG    +  +     +     
Sbjct: 630 IIKTLKKLGVKSIAVYSDPDKYAQHSLMA---DVAIP-LHGTTAAETYINIEKVIKAAKE 685

Query: 80  THSGIL---ASALSMDKMRSKQVVSSCGVPVCPS-------------------------- 110
           + +  +      LS +   S +      V V PS                          
Sbjct: 686 SGAEAIIPGYGFLSENADFSDRCGKEGIVFVGPSGDAIRKLGLKHSAREIAEKAGVPLVP 745

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +   +        +  P ++K   GG  +G+  +  ++ I                
Sbjct: 746 GSGLVKDAKEARAIAAKLEYPIMVKSTAGGGGIGLQKVDSEKDIERVFETVQHQGKSYFG 805

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               +++        +    L                L+  +       PA    +  + 
Sbjct: 806 DSGVFLERFVENARHVEIQMLGDGYGNAIAVGERDCSLQRRNQKIIEETPAPNLPEETRN 865

Query: 227 VQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
             R A      ++  +     ++++DP   + ++LE+N +              +     
Sbjct: 866 KMRKAAESLGSSMKYKCAGTVEYIYDPKRDEFYFLEVNAR----------LQVEHPITEM 915

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+ WM+  A+
Sbjct: 916 VTGL---DLVEWMLLIAA 930


>gi|67516567|ref|XP_658169.1| hypothetical protein AN0565.2 [Aspergillus nidulans FGSC A4]
 gi|238054311|sp|O93937|PYR1_EMENI RecName: Full=Protein pyrABCN; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate; Includes:
           RecName: Full=Aspartate carbamoyltransferase
 gi|40747508|gb|EAA66664.1| hypothetical protein AN0565.2 [Aspergillus nidulans FGSC A4]
 gi|259489171|tpe|CBF89223.1| TPA: Protein pyrABCN [Includes Glutamine-dependent
           carbamoyl-phosphate(EC 6.3.5.5);Aspartate
           carbamoyltransferase(EC 2.1.3.2)]
           [Source:UniProtKB/Swiss-Prot;Acc:O93937] [Aspergillus
           nidulans FGSC A4]
          Length = 2275

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 502 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 561

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 562 TFGGQTALQVGIQLKDEFESLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAS 621

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        I  P +++       LG         +    L + ++    Q+LIE+ +
Sbjct: 622 SLEEALQVVESIGFPVIVRAAYALGGLGSGFADNLDELKD--LCAKAFAASPQVLIERSM 679

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 680 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 738

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 739 NVIRHLGVVGECNIQYALNPYSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 788


>gi|229061611|ref|ZP_04198953.1| Pyruvate carboxylase [Bacillus cereus AH603]
 gi|228717702|gb|EEL69355.1| Pyruvate carboxylase [Bacillus cereus AH603]
          Length = 936

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 27/244 (11%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +P+ P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPIIPGSDGPVNSIEEVGEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|113954487|ref|YP_731653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9311]
 gi|113881838|gb|ABI46796.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           CC9311]
          Length = 447

 Score = 49.9 bits (117), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 65/219 (29%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +      A     DK  +K  + + GVP  P    
Sbjct: 78  AIHPGYGFLAENDRFAEMCRDHGITFIGPSPHAIRSMGDKSTAKSTMQAVGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQL 166
            +       +    +  P +IK   GG   G+ ++     +          +    G+  
Sbjct: 138 LLPNPEAAAELAAAMGYPVMIKATAGGGGRGMRLVPSPDQLVKLYKAAQGEADAAFGNPG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           L  +          V   A        V   +      +             +  ++ + 
Sbjct: 198 LYMEKFIDRPRHVEVQILADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPELRRR 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A ++I   G    +FL D      +++E+N +
Sbjct: 256 MGEAAVAAARSINYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|283470325|emb|CAQ49536.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ST398]
          Length = 1150

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     D+ + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSDLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|241761246|ref|ZP_04759334.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|260752778|ref|YP_003225671.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
 gi|241374153|gb|EER63650.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ATCC 10988]
 gi|258552141|gb|ACV75087.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis NCIMB 11163]
          Length = 452

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 11/233 (4%)

Query: 41  SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           ++  ++A  +    D      +G   E+     I+E  E+ +         +  DK+ +K
Sbjct: 63  NIPNIIAAAEISGADAVHPG-YGFLSENARFAEIVESHELIWIGPKPEHIRIMGDKVEAK 121

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +     G+P+ P     +   R        I  P +IK   GG   G+ V++ +  +   
Sbjct: 122 RTAGKLGLPLVPGSDGPLHEIREAKAVAAEIGYPVLIKAASGGGGRGMKVVQSEDELESL 181

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + Q+ S           Y++        +        E            L+        
Sbjct: 182 MAQAKSEAKAAFGDDTIYMEKYLAAPRHIEFQIFGDGEGQAIHLGERDCSLQRRHQKVLE 241

Query: 214 VLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P   I  +  +E+  +   A   +  RG    +FL+   + + +++E+N +
Sbjct: 242 EAPSPVISAEQREEMGGIVAKAMSDMQYRGAGTIEFLY--ENGQFYFIEMNTR 292


>gi|229586965|ref|YP_002845466.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia africae
           ESF-5]
 gi|228022015|gb|ACP53723.1| Acetyl-CoA carboxylase, biotin carboxylase [Rickettsia africae
           ESF-5]
          Length = 665

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/297 (14%), Positives = 94/297 (31%), Gaps = 46/297 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 GTIKKMGDKIEAKKIAIEAGVSTVPGYMGTINDVKQAID------IAKEIGFPVIVKATA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   ++
Sbjct: 166 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLIADQYGNI 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  DI +E+ R      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSSFITEDIRQEMYRQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
            D      ++LE+N +              +       G    +++  M++ A+  +
Sbjct: 282 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVKEMIQIAAGEK 324


>gi|158430175|pdb|2QF7|A Chain A, Crystal Structure Of A Complete Multifunctional Pyruvate
           Carboxylase From Rhizobium Etli
 gi|158430176|pdb|2QF7|B Chain B, Crystal Structure Of A Complete Multifunctional Pyruvate
           Carboxylase From Rhizobium Etli
          Length = 1165

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 166 MAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA 225

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 226 RHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGAT 285

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 286 NYIGAGTVEYLMDADTGKFYFIEVNPR 312


>gi|86359581|ref|YP_471473.1| pyruvate carboxylase [Rhizobium etli CFN 42]
 gi|1256798|gb|AAC44388.1| pyruvate carboxylase [Rhizobium etli]
 gi|86283683|gb|ABC92746.1| pyruvate carboxylase protein [Rhizobium etli CFN 42]
          Length = 1154

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 155 MAAAIGYPVMLKASWGGGGRGMRVIRSEADLAKEVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQILGDTHGNVVHLFERDCSVQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAGAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|56551631|ref|YP_162470.1| acetyl-CoA carboxylase biotin carboxylase [Zymomonas mobilis subsp.
           mobilis ZM4]
 gi|56543205|gb|AAV89359.1| acetyl-CoA carboxylase, biotin carboxylase [Zymomonas mobilis
           subsp. mobilis ZM4]
          Length = 428

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 80/233 (34%), Gaps = 11/233 (4%)

Query: 41  SVGLVLAHLKP---DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           ++  ++A  +    D      +G   E+     I+E  E+ +         +  DK+ +K
Sbjct: 39  NIPNIIAAAEISGADAVHPG-YGFLSENARFAEIVESHELIWIGPKPEHIRIMGDKVEAK 97

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           +     G+P+ P     +   R        I  P +IK   GG   G+ V++ +  +   
Sbjct: 98  RTAGKLGLPLVPGSDGPLHEIREAKAVAAEIGYPVLIKAASGGGGRGMKVVQSEDELESL 157

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + Q+ S           Y++        +        E            L+        
Sbjct: 158 MAQAKSEAKAAFGDDTIYMEKYLAAPRHIEFQIFGDGEGQAIHLGERDCSLQRRHQKVLE 217

Query: 214 VLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P   I  +  +E+  +   A   +  RG    +FL+   + + +++E+N +
Sbjct: 218 EAPSPVISAEQREEMGGIVAKAMSDMQYRGAGTIEFLY--ENGQFYFIEMNTR 268


>gi|261821394|ref|YP_003259500.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           wasabiae WPP163]
 gi|261605407|gb|ACX87893.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           wasabiae WPP163]
          Length = 392

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/282 (10%), Positives = 79/282 (28%), Gaps = 31/282 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQIAHRSHVINMLDGDALKALIEAERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVALEKQGHHVVPCAEATRLTMNREGIRRLAAETLGVPT-STYRFADSEERFY 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  +I+  + +             G   +I + +   + 
Sbjct: 143 QAVEAIGYPCIVKPVMSSSGKGQSLIRSAEQLEQAWSYAQQGGRAGGGRVIVEGLVNFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P ++        Q++A    +A
Sbjct: 203 EITLLTIHAVDGIHFCAPIGHRQE-----DGDYRESWQPQQMSELALDRAQKMASDVVKA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 258 LGGYGLFGVELFVC--GDEVIFSEVSPRP--HDTGMVTMISQ 295


>gi|269836967|ref|YP_003319195.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
 gi|269786230|gb|ACZ38373.1| carbamoyl-phosphate synthase, large subunit [Sphaerobacter
           thermophilus DSM 20745]
          Length = 1080

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQID-------VDRSVGLV--------------LAHLKPDLAFNV 57
           G     AL + G +   ++        D  V  V              +   +PD     
Sbjct: 30  GTQALRALREEGIQSVLVNSNPATIMTDEDVADVVYIEPLTLDVLRRVIIREQPDGLLPT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-------GVPVCPS 110
           L G  G +     + E   +      +L + L   +    + +           V     
Sbjct: 90  LGGQTGLNL-AVELAEAGILDRYGVRLLGTPLDAIRKAEDRELFKQLLLDIGEPVIESTI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +    +  P +I+P       G  +    + +   ++   + +  +Q+L+E+
Sbjct: 149 VHSLTEAREFAREVPLPLIIRPAYTLGGTGGGIATTPEELDRIVVAGLAASPINQVLLER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 + Y+ ++  
Sbjct: 209 SLLGWKEIEYEVMRDASDTCITICNMENMDPMGVHTGDSIVVAPSQTLTDRE-YQMLRNA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     F  DP S + + +E+N  P ++  S     +   GY    +  
Sbjct: 268 ALKIIRALGIEGGCNVQFALDPNSEQYYVIEVN--PRVSRSS--ALASKATGYPIARVSA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 29/178 (16%), Positives = 63/178 (35%), Gaps = 18/178 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + V+   + +   L  S +++ G  +LI++Y+ G E+   
Sbjct: 705 AERIGYPVLVRPSYVLGGRAMEVVHSREYLARYLETSVTFDTGHPVLIDKYLQGKEVEVD 764

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  V P          ++         A+G
Sbjct: 765 AICDGKEVLI----PGIMEHIERAGVHSGDSFAVYPGLNLYPREVDKIVEHTTQIALALG 820

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             G+    ++      +++ LE+N +   T     P ++   G         M+  A+
Sbjct: 821 AVGLINIQYVIHA--GRIYVLEVNPRASRT----VPFLSKATGVP-------MIRLAT 865


>gi|170041953|ref|XP_001848709.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus]
 gi|167865521|gb|EDS28904.1| carbamoyl-phosphate synthase large chain [Culex quinquefasciatus]
          Length = 2213

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 416 SGSQAIKALKEEKIQTVLINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPGGILL 475

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+      V+     V    +
Sbjct: 476 TFGGQTALNCGIELEKAGIFQKYGVKIMGTPITSIIETEDRKIFADRVAEIGEKVAPSAA 535

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++ + I  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 536 VYSVQEAIEAANKIGYPVMARAAFSLGGLGSGFASNQEEL--KVLAQHALAHSNQLIIDK 593

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            +    I V   +       ++  +        +    Y  ++  
Sbjct: 594 SLKGW-KEVEYEVVRDVYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRST 652

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 653 AIKVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 708

Query: 291 WM 292
            +
Sbjct: 709 KL 710


>gi|326406157|gb|ADZ63228.1| pyruvate carboxylase subunit A [Lactococcus lactis subsp. lactis
           CV56]
          Length = 1137

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V + D  +     ++ S   G     E YV+      
Sbjct: 146 FAKTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIGAFGSGEIYVEKYIENP 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAI 238
             +    L  +   +         ++  +     + PA     D   E+   A    + +
Sbjct: 206 KHIEVQILGDSHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSLDFRNEICEAAVKLCKNV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL      K +++E+N +
Sbjct: 266 GYVNAGTVEFLV--KDDKFYFIEVNPR 290


>gi|322704234|gb|EFY95831.1| pyruvate carboxylase, putative [Metarhizium anisopliae ARSEF 23]
          Length = 647

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 1/140 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K + GG   GI +++ D  +   +  +++ +    +  E+          +    
Sbjct: 156 YPVMVKAVDGGGGRGIRLVRNDGELENSVRAATNESPSKSVFAEKAATDGFHHVEIQVIG 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                 +        S   +                 +  E+   A    +AI  R +  
Sbjct: 216 DGANAAVCHLWERDCS-VQRRFQKIVEVAPALFSNRSLIDELAGAAVRMARAIRYRSLGT 274

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            +FL +      ++LEIN +
Sbjct: 275 VEFLVNEKEDVFYFLEINPR 294


>gi|301168427|emb|CBW28017.1| putative biotin carboxylase [Bacteriovorax marinus SJ]
          Length = 482

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 47/321 (14%), Positives = 99/321 (30%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQIDVD-----------------------------RSVGLVLAHL 49
               A A  + G     I  D                              ++  V+   
Sbjct: 21  ASRIAKACRELGHTAIGIWTDNEVHATHLQFCDEWVHLKGSTNAETYLNIDNLVKVIKEN 80

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E   I +    +    +  DK  SKQ+ +  GVP  P
Sbjct: 81  NVDAVHPG-YGFLSENADFAKRMESEGIVFIGPNVECIKVMGDKATSKQLANQVGVPTVP 139

Query: 110 SILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                  +++        I  P ++K + GG   G+     ++ +  +           +
Sbjct: 140 GTDKAVESVEEAVEISAKIGYPVLLKAVAGGGGRGMRACANEEEVRANFEAVGRESLAAF 199

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+GD L+ +  V+   +   ++ D   +V      +        K      +  +     
Sbjct: 200 NNGDLLVEKLIVNPRHIEVQILADKKGNVYHFFERECSIQRRHQKIIEEAPSPFI--GDD 257

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFP 275
            ++ + V   A    +A+        +F+     +  ++LE+N       P +T      
Sbjct: 258 EELRQNVCETAVKLAKAVNYDSAGTVEFIM-GEDKSFYFLEMNTRIQVEHP-ITE----- 310

Query: 276 EMAAYAGYSFRELLLWMVEDA 296
                 G    +L++ M++ A
Sbjct: 311 ---EITGI---DLIVCMIQSA 325


>gi|281491131|ref|YP_003353111.1| pyruvate carboxylase [Lactococcus lactis subsp. lactis KF147]
 gi|281374881|gb|ADA64400.1| Pyruvate carboxylase [Lactococcus lactis subsp. lactis KF147]
          Length = 1137

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V + D  +     ++ S   G     E YV+      
Sbjct: 146 FAKTYGYPVMIKAALGGGGRGMRVARNDAEMHDGYARAKSEAIGAFGSGEIYVEKYIENP 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAI 238
             +    L  +   +         ++  +     + PA     D   E+   A    + +
Sbjct: 206 KHIEVQILGDSHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSLDFRNEICEAAVKLCKNV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL      K +++E+N +
Sbjct: 266 GYVNAGTVEFLV--KDDKFYFIEVNPR 290


>gi|209522374|ref|ZP_03270989.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. H160]
 gi|209497192|gb|EDZ97432.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. H160]
          Length = 454

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDDPKEIVKIARQIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|188585473|ref|YP_001917018.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ,
           biotin carboxylase [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179350160|gb|ACB84430.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha ,
           biotin carboxylase [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 445

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 84/260 (32%), Gaps = 32/260 (12%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +            +K  +++++++  VPV P    
Sbjct: 76  AIHPGFGFLSENSRFADVCRKCNITFIGPRPEVIENMGNKSNARKLMANADVPVVPGSKK 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS---WNHGDQL 166
            +   +  +     +  P +IK   GG   GI +I+    +   L  +        GD  
Sbjct: 136 PLTDEQDAVQMADELGYPVMIKASAGGGGRGIRIIRSQAELLNALGTAKQEAATFFGDDT 195

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +          +   A        +   +      + +           +  ++ ++
Sbjct: 196 MYMEKYLEKPRHVEIQILADKYG--NVLHLGERDCSIQRRNQKVLEEAPCPVMTEELREK 253

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280
           + + A  A + +G +     +FL D  +   +++E+N +              +      
Sbjct: 254 MGQAAVRAAKYVGYQNAGTIEFLLDKHNN-FYFMEMNTR----------IQVEHPVTEQI 302

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G    +L+   ++ A+  R
Sbjct: 303 VGL---DLIKEQIKIAAGQR 319


>gi|154149224|ref|YP_001406712.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
 gi|153805233|gb|ABS52240.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter hominis ATCC BAA-381]
          Length = 337

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 29/185 (15%), Positives = 72/185 (38%), Gaps = 16/185 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P ++K   GG   G+ ++ K + +  +   + S     + +G   + +   +  
Sbjct: 41  ANEMGYPVILKAAAGGGGRGMRLVTKGEDLEKNFWAAESEALSAFGNGSMYIEKYITNPR 100

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +V  +            +             +     +++   A  A 
Sbjct: 101 HVEVQILGDEHGNVIHVGERDCSMQ----RRHQKLIEETPATILDEKTREKLHETAIAAT 156

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +AIG  G    +FL+D  S++ +++E+N +  +       EM   +G    +++ WM+  
Sbjct: 157 KAIGYYGAGTFEFLYDQDSKEFYFIEMNTR--LQVEHCVSEM--VSGL---DMVKWMIRI 209

Query: 296 ASCLR 300
           A   +
Sbjct: 210 AQGEK 214


>gi|160900684|ref|YP_001566266.1| phosphoribosylglycinamide formyltransferase 2 [Delftia acidovorans
           SPH-1]
 gi|254788767|sp|A9BNI6|PURT_DELAS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|160366268|gb|ABX37881.1| phosphoribosylglycinamide formyltransferase 2 [Delftia acidovorans
           SPH-1]
          Length = 405

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/291 (12%), Positives = 80/291 (27%), Gaps = 35/291 (12%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++   KPDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEAEKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ---------VVSSCGVPVCP 109
                    +   LE   +        A+ L+MD+   ++                    
Sbjct: 84  E---AIATPMLEELEAAGVVTVIPTARAARLTMDREGIRRLAAETLGLATSPYRFCDSQQ 140

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLI 168
            +       D Q  I  P V+KP+   S  G   +     +      + +        +I
Sbjct: 141 ELQAAIDGTDGQPAIGFPCVVKPVMSSSGKGQSKLDGPDDVAKAWDYAMAGGRVSHGRVI 200

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            +     +     +   +                 ++ S        P  +     ++ +
Sbjct: 201 VEGFIDFDYEITQLTVRAKGADGQVQTHFCDPIGHIQQSGDYVESWQPHPMHPAALQKSR 260

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
            +A      +G  G+   +        +V++ E++ +P  T +        
Sbjct: 261 DIAKAVTDDLGGLGLFGVELFV--KGEQVWFSEVSPRPHDTGLVTLATQWQ 309


>gi|120435429|ref|YP_861115.1| carbamoyl-phosphate synthase large subunit [Gramella forsetii
           KT0803]
 gi|117577579|emb|CAL66048.1| carbamoyl-phosphate synthase large subunit [Gramella forsetii
           KT0803]
          Length = 950

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/255 (13%), Positives = 76/255 (29%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRYGIKIMGTSYESLD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            +    P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSKLLQENDIPYPDFGVAENADEALALADELDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KDELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   + P  +   + ++++        A+   G+    F       KVF +E N +
Sbjct: 800 ---DSHALLPPFNLGDLVMEQIRDHTKKIALALNTVGLINIQFAI--KDDKVFIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/304 (12%), Positives = 86/304 (28%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G K   I         D              +S+  +L    + D   
Sbjct: 29  SGTQSLRSLREDGIKTILINSNPATIMTDPSMADHVYLKPLTTKSIVGILKEHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCP 109
             + G    +  ++A          +      I A  +  D+ + KQ++    VP     
Sbjct: 89  PTMGGQTALNLCIEADEKGIWNDFNVKLIGVDIDAINICEDREKFKQLMGRINVPVAPAK 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++       +       P VI+        G   + + +     L +    +   ++LI+
Sbjct: 149 TVTSYLQGKEVAQEFGFPLVIRASFTLGGGGAGFVHRAEDFDEMLTRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDRNDNVVIICAIENMDPMGIHTGDSITVAPAMTLSDKTYQRMRDL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIVAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328


>gi|50408490|ref|XP_456785.1| DEHA2A10384p [Debaryomyces hansenii CBS767]
 gi|49652449|emb|CAG84751.1| DEHA2A10384p [Debaryomyces hansenii]
          Length = 2211

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 454 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVTADFVRKVIKHERPDGIYC 513

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----L 112
              G       ++   E   +     G     +   + R     +   +    +      
Sbjct: 514 TFGGQTALGVGIKLKDEFEGLGVKVLGTPIDTVITTEDRELFSQAMDEINEKCAKSAAAN 573

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +D+ + I  P +I+       LG      +Q +    L + ++    Q+L+E+ +
Sbjct: 574 NVSEAIDAANSIGYPLIIRAAYALGGLGSGFADNEQELVA--LCNKAFATSPQVLVERSM 631

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 632 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 690

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 691 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 740


>gi|85058130|ref|YP_453832.1| acetyl-CoA carboxylase biotin carboxylase subunit [Sodalis
           glossinidius str. 'morsitans']
 gi|84778650|dbj|BAE73427.1| biotin carboxylase [Sodalis glossinidius str. 'morsitans']
          Length = 449

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPPPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +    VP  P 
Sbjct: 74  GSVAIHPGYGFLSENADFAEQVERSGFIFIGPHAETIRLMGDKVSAINAMKKADVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                           + I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPVGEDMDKNRAIANRIGYPVIIKASGGGGGRGMRVVRSNKELEASIRMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNALYLAERDCSMQRRHQKVVEEAPAPTITEELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A   IG RG    +FL+   + + F++E+N +
Sbjct: 254 HFIGERCAKACVEIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|330875234|gb|EGH09383.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. glycinea str. race 4]
          Length = 1027

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 541 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 600

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 601 LKLARALEAAGVPIIGTSPDAIDRAEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAK 660

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 661 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 720

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 721 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 777

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 778 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 815



 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 80/269 (29%), Gaps = 12/269 (4%)

Query: 32  KVSQIDVDR--SVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGIL 85
             + I+  +  +V  ++   +PD     + G        D   + +LE   +    +   
Sbjct: 16  DATYIEPIKWQTVAKIIEKERPDALLPTMGGQTALNCALDLEREGVLEKFGVEMIGANAD 75

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
               + D+ R  + + S G+    S               +  P +I+P       G  +
Sbjct: 76  TIDKAEDRSRFDKAMKSIGLACPRSGIAHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGI 135

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               +       +    +   +LLI++ + G +     +     D   I     +F    
Sbjct: 136 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMG 195

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +          +          +  +     G S   F   P + ++  +E+N
Sbjct: 196 VHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMN 255

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             P ++  S     +   G+    +   +
Sbjct: 256 --PRVSRSS--ALASKATGFPIARVAAKL 280


>gi|315150105|gb|EFT94121.1| pyruvate carboxylase [Enterococcus faecalis TX0012]
          Length = 1152

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 68/235 (28%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+       E   I +         +  DK++
Sbjct: 71  LDI-ENIIQIAKKSGADAIHPG-YGFLSENLRFAERCEEEGIIFVGPKTHHLDIFGDKIK 128

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + GV   P     +      +        P +IK   GG   G+ V    +   
Sbjct: 129 AKEAAVAAGVASIPGSDGPVATVEEVVAFGETHGFPIMIKAALGGGGRGMRVAHDAKEAR 188

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++      
Sbjct: 189 EGYERAKSEAKAAFGSDEVYVEKYISNPKHIEVQILGDHHGNVLHLFERDCSVQRRHQKV 248

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  +     A       +G       +FL      + +++E+N +
Sbjct: 249 VEVAPCVSMNEEQRAAICSAAVQLMAHVGYVNAGTVEFLV--EGDQFYFIEVNPR 301


>gi|288802207|ref|ZP_06407647.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           melaninogenica D18]
 gi|288335174|gb|EFC73609.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           melaninogenica D18]
          Length = 393

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/267 (13%), Positives = 73/267 (27%), Gaps = 18/267 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   KPDL    +     E         +   P   +          +  + + + 
Sbjct: 56  LDAIVDKHKPDLIIPEIEAIRTERLFDYEERGIQVAPSARAVNFTMNRRAIRDLAARDLG 115

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P V+KPL   S  G   +  D+ +      +    
Sbjct: 116 LRT-AKYFYAKTYDEFKAAADEIGFPCVVKPLMSSSGHGQSYVHNDEELEEAFKNAMDGA 174

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            GD   +         +   +   +             +    +          P  I  
Sbjct: 175 RGDVKEVIIEEFIEFESEFTLLTVTQKNGPTLFCPPIGHI---QKGGDYRESWQPYAISK 231

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM------TPVS 272
           +  ++ + +A    +A+   GI   +F       +V + E++ +P   GM      T  S
Sbjct: 232 ESLRQAEHIANEVTRALTGYGIWGVEFFLTKK-GEVIFSELSPRPHDTGMVTLAHTTNFS 290

Query: 273 IFPEMAAY-AGYSFRELLLWMVEDASC 298
            F        G     +    +E A C
Sbjct: 291 EFELHFRAVMGLPIPAI---HLEHAGC 314


>gi|228928994|ref|ZP_04092026.1| Pyruvate carboxylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228830801|gb|EEM76406.1| Pyruvate carboxylase [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 1148

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/244 (11%), Positives = 76/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVDSLEEVKEFAENYDYPIIIKASLGGGGRGMRIVRT 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL        +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICEAAVKLTKNVNYLNAGTVEFLV--KDDNFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|242803474|ref|XP_002484181.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Talaromyces stipitatus ATCC 10500]
 gi|218717526|gb|EED16947.1| bifunctional pyrimidine biosynthesis protein (PyrABCN), putative
           [Talaromyces stipitatus ATCC 10500]
          Length = 2266

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G     I+ +                       V  V+ H +PD  + 
Sbjct: 512 SGSQAIKALKQEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 571

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 572 TFGGQTALQVGIQLKDEFEALGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 631

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG    +  + +    L + ++    Q+LIE+ +
Sbjct: 632 NIEEAMRVVEDIGFPVIVRAAYALGGLGSGFAEDPKQLRE--LCTKAFAASPQVLIERSM 689

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 690 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 748

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 749 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 798


>gi|163749092|ref|ZP_02156342.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Shewanella benthica KT99]
 gi|161331162|gb|EDQ02051.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            [Shewanella benthica KT99]
          Length = 1519

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1007 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1065

Query: 101  SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
               GVPV P         +      + I  P ++K ++GG   GI V+++   +      
Sbjct: 1066 QDNGVPVVPGSHGILSNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERQGDMISLFQQ 1125

Query: 153  -DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1126 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVVEESG 1185

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++  +V +       A    G    +F+++  + +V+++E+N +
Sbjct: 1186 STMLPP----ELKDKVLQYTLDLGNATDYMGAGTVEFIYNLDTNEVYFMEMNTR 1235


>gi|118590072|ref|ZP_01547476.1| acetyl-CoA carboxylase [Stappia aggregata IAM 12614]
 gi|118437569|gb|EAV44206.1| acetyl-CoA carboxylase [Stappia aggregata IAM 12614]
          Length = 448

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/221 (17%), Positives = 74/221 (33%), Gaps = 12/221 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE   I +         +  DK+++KQ     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILEAHGIEFIGPTAEHIRIMGDKIQAKQTAKDLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGD 164
              +            I  P ++K   GG   G+ V + +  +   L  + S      GD
Sbjct: 135 DGAVTAGDDAHAIAREIGYPVLVKAAAGGGGRGMKVARSEAELDTALSTARSEAKAAFGD 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L  +   G      +           AV   +      +             +     
Sbjct: 195 DALYMEKYLGKPRHIEIQVLGDGKG--NAVHLGERDCSLQRRHQKVLEEAPSPSLNASQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           KE+  +   A + +  RG+   +FL+   + + +++E+N +
Sbjct: 253 KEIGEIVAAAMRKLKYRGVGTVEFLY--ENGEFYFIEMNTR 291


>gi|121611488|ref|YP_999295.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
 gi|121556128|gb|ABM60277.1| Carbamoyl-phosphate synthase L chain, ATP-binding
           [Verminephrobacter eiseniae EF01-2]
          Length = 453

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 48/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI +      +  +L ++ +           Y++       
Sbjct: 151 AGDIGYPVLIKASAGGGGRGIHIAGDASELRQELGRAQAQAKAAFGDAAVYLERFIRQAR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   +  V   +      +           A I     + +   A    +A+  
Sbjct: 211 HIEVQILGDGKRVVHCFERECSLQRRRQKIWEEAPCAAIDAATRQALCDSALALARAVDY 270

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    ++L+D  +R  F++E+N +
Sbjct: 271 SGAGTLEYLYDEDTRAFFFIEMNTR 295


>gi|82524025|emb|CAI78703.1| carbamoylphosphate synthase large subunit [uncultured
           Flavobacteriaceae bacterium]
          Length = 374

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 78/229 (34%), Gaps = 12/229 (5%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D   ++ + L     DL   +           + ++           I   +++++K   
Sbjct: 66  DWVNNINIELEKFDIDLVMPIFEDGIQALTKYKNLIYKGRY-CVLPSIEDFSIALNKDLL 124

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + +S+  +    SI++          I+ P++IKP         IV   ++    +   
Sbjct: 125 TKHMSNNQIQASKSIVIKPGETFKNESINSPFLIKPTSNSGGGVGIVAFSNEKDIENYFI 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            + +      L+E+Y++G ++ C V+ D    +                 S         
Sbjct: 185 ENKFKI--NYLVEEYIEGYDICCNVLCDKGKILAYTIHKGIMKGGKIYGPSVELLFLYD- 241

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    ++ +      +++   G++  D  +D  +++   +EIN +
Sbjct: 242 --------DQLYKKIVKLMESLNWYGVANIDIRYDERAKEFKVIEINPR 282


>gi|254933973|gb|ACT87595.1| carbamoylphosphate synthetase [Discophlebia sp. JCR-2009]
          Length = 976

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALQEEKIQTLLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVSVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   +L     +H DQL+I++
Sbjct: 496 VTSIEEALAAAQQIGYPVMARSAFSLGGLGSGFANNEDEL--KILAHHGLSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIKHFGIIGECNIQYALNPSSEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|254495894|ref|ZP_05108803.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           drancourtii LLAP12]
 gi|254354876|gb|EET13502.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           drancourtii LLAP12]
          Length = 446

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 96/321 (29%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGL------------------------VLAHLKP- 51
                 A ++ G +   +  DVD+ +                          +++  +  
Sbjct: 14  ALRILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+     I+E     +         L  DK+ +   + + GVP  
Sbjct: 74  DAV--AIHPGYGFLSENADFADIVEQSGFKFIGPRGDTIRLMGDKVSAIHAMKAAGVPCV 131

Query: 109 PSILVNRFTMDSQ-----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         D++       I  P +IK   GG   G+ V+  + ++   +  + S    
Sbjct: 132 PGSDGPLTEDDNRSLEIGRKIGYPVIIKAAGGGGGRGMRVVHSESNLLSAIALTRSEAKA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
                  Y++        +    L   +            ++          P   I  +
Sbjct: 192 AFNNATVYMEKFLENPRHVEFQVLGDGQGKAIHLGERDCSMQRRHQKVVEEAPAPGISAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           + KE+      A Q +  RG    +FL+       +++E+N +              +  
Sbjct: 252 LRKEIGASVVKACQDLKYRGAGTFEFLY--QDGCFYFIEMNTR----------IQVEHPV 299

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   ++ AS
Sbjct: 300 TEMITGI---DLIKEQIKIAS 317


>gi|261349379|ref|ZP_05974796.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
 gi|288861743|gb|EFC94041.1| ATP-grasp domain protein [Methanobrevibacter smithii DSM 2374]
          Length = 367

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 36/178 (20%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L+ DK+++K+  +  GVP     ++ +   +S+  I  P V+K  +G     I V +   
Sbjct: 103 LTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKIEFPVVLKQGQGQGGKDIKVAESLD 162

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +     +       D  L E++++G      +             P     +       
Sbjct: 163 DVKEYFEEF------DHALCEKFIEG--SEISIEVLGYNGEYVPLSPIYKGETTLEGIHP 214

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           LN     P  +       VQR A+   + +G  GI   DF+F    ++++ +E+N +P
Sbjct: 215 LNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQQLYAIEVNTRP 272


>gi|1154952|emb|CAA57433.1| carbamoyl-phosphate synthase (glutamine-hydrolysing)
           [Schizosaccharomyces pombe]
          Length = 2223

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 475 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSIYV 534

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   E  ++     G     +   + R     +   +    +   +  
Sbjct: 535 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIITTEDRELFARAMDEINEKCAKSASAS 594

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        IS P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 595 SIEEAIKVSKDISFPVIVRAAYALGGLGSGFADNEAELID--LCTLAFATSPQVLIERSM 652

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 653 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLTDEDYNMLRTTAV 711

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P +++   +E+N +  ++  S     +   GY   
Sbjct: 712 NVIRHLGVVGECNIQYALNPFTKEYCIIEVNAR--LSRSS--ALASKATGYPLA 761


>gi|24215399|ref|NP_712880.1| D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45657184|ref|YP_001270.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24196516|gb|AAN49898.1|AE011436_13 D-alanine--D-alanine ligase [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45600422|gb|AAS69907.1| d-alanine--d-alanine ligase [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 374

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 68/331 (20%), Positives = 121/331 (36%), Gaps = 50/331 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLA-------HLKPDLAFNVLHGNFGEDGL 67
           S  S  A    L + G  +  +     +   L          +P + F+++ G    +  
Sbjct: 31  SKKSVDAILELLNEVGESIELVVTPNELLEKLKCYCDLDFSKRP-VIFHLMEGFCSRNRE 89

Query: 68  --VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS 125
             + A+ EL   P+T S   +  +S+DK  ++    S GVPV     +    +  + L+ 
Sbjct: 90  SLIPAVAELFGFPHTGSDSYSQNVSLDKNLTRIFAQSIGVPVASGFWIRSKDVLFKELLQ 149

Query: 126 -------------------------PPYVIKPLKGGSS---LGIIVIKKDQSIPLDLLQS 157
                                     P  IKP   GSS       +I   + +   L ++
Sbjct: 150 LECNSEIKKRFSFSKGNELNLKNFSFPAFIKPAGEGSSLGIGEKNIIYSFEELNTLLSEA 209

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDV--------TEIAVPKSDFYSYELKYSSL 209
                    L+E+Y+ G E T  V+G A+                 K +    E   S  
Sbjct: 210 PEIFF--PYLLEEYLTGNEYTISVIGSATFGYKVSSAGRLILREDLKVEDVYGEKTKSKS 267

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
                L    P D+   +Q+ + L  +++G  G +R D+  D L    F+LE+N+ PG++
Sbjct: 268 IMPETLVFDCPKDLEVIIQQQSVLFCESLGTSGPARLDWKLDSLGN-PFFLEMNLTPGLS 326

Query: 270 P-VSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           P  S FP    ++    + L   +++ A   
Sbjct: 327 PFYSTFPICYRHSLGDEKNLFQEILKIARLD 357


>gi|19113967|ref|NP_593055.1| carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate
           carbamoyltransferase Ura1 [Schizosaccharomyces pombe
           972h-]
 gi|1172781|sp|Q09794|PYR1_SCHPO RecName: Full=Protein ura1; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate synthase;
           Includes: RecName: Full=Aspartate carbamoyltransferase
 gi|1009456|emb|CAA91130.1| carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate
           carbamoyltransferase Ura1 [Schizosaccharomyces pombe]
          Length = 2244

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 496 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKQERPDSIYV 555

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   E  ++     G     +   + R     +   +    +   +  
Sbjct: 556 TFGGQTALNVGIELKDEFEQLGVKVLGTPIDTIITTEDRELFARAMDEINEKCAKSASAS 615

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        IS P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 616 SIEEAIKVSKDISFPVIVRAAYALGGLGSGFADNEAELID--LCTLAFATSPQVLIERSM 673

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 674 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLTDEDYNMLRTTAV 732

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P +++   +E+N +  ++  S     +   GY   
Sbjct: 733 NVIRHLGVVGECNIQYALNPFTKEYCIIEVNAR--LSRSS--ALASKATGYPLA 782


>gi|58696837|ref|ZP_00372360.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58698351|ref|ZP_00373266.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58535141|gb|EAL59225.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58536957|gb|EAL60121.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 664

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +         ++ +K+ +K+     GV V P  +      
Sbjct: 59  YGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMGKISDA 118

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 119 AHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEK 178

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++   +    
Sbjct: 179 YIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVS 238

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +G       +F+ D   +  ++LE+N +
Sbjct: 239 LAKQVGYFSAGTVEFVVD-KDQNFYFLEVNTR 269


>gi|325673904|ref|ZP_08153594.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus equi
           ATCC 33707]
 gi|325555169|gb|EGD24841.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus equi
           ATCC 33707]
          Length = 404

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 69/273 (25%), Gaps = 36/273 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                VD      +  ++   +P      +
Sbjct: 33  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHTVDMGDREQLLRLVEDERPHFVVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         L  +  T      +       R                       
Sbjct: 93  EAIATEALAEVEERGLAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDEVR 152

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  V +    +               L   +   G  + 
Sbjct: 153 AATERIGFPCVIKPVMSSSGKGQSVARSVDDLENSWEY--------ALSGGRVNKGRVI- 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                D   ++T + V   D   +                  P  +        + +A  
Sbjct: 204 VEGFVDFDYEITLLTVRAVDGTHFCEPIGHLQDSGDYIESWQPQAMSPAALAAARDVAEK 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              A+G RGI   +         V++ E++ +P
Sbjct: 264 VTTALGGRGIFGVELFV--KGDDVYFSEVSPRP 294


>gi|282162870|ref|YP_003355255.1| carbamoyl-phosphate synthase large chain [Methanocella paludicola
           SANAE]
 gi|282155184|dbj|BAI60272.1| carbamoyl-phosphate synthase large chain [Methanocella paludicola
           SANAE]
          Length = 1084

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 34/299 (11%), Positives = 83/299 (27%), Gaps = 38/299 (12%)

Query: 24  SALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVLHGNF 62
            AL ++G +   I           DV   +            ++   +P        G  
Sbjct: 573 KALRESGIEAHIINNNPETVSTDFDVSDKLFFEPITLEHVMNIIEKERPYGVMVQFGGQT 632

Query: 63  GEDGLVQAILELLEIPY-------THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
             +  +   +EL            T    +  A   D             P         
Sbjct: 633 SVNMAIPLQMELNRRKDLNTVIIGTSPDDMNIAEDRDLWGRMMKEMGILQPEHGIAYSTD 692

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDG 174
                   I  P +++P        + ++  +  +   + ++   +    +LI+ +  D 
Sbjct: 693 EAKVEAARIGYPILVRPSYVLGGRAMEIVYDEADLERYMTEAVKVSRKHPVLIDDFLEDA 752

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E+    + D    +    +   +           ++  + P  +  ++  +V+ +    
Sbjct: 753 TEIDVDAISDGKDVLIGAIMEHIEEAGIHSG---DSACVIPPQSLSKEVQDQVRDITRKI 809

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             A+   G       +     KV+ LE N +   T     P ++   G    ++    +
Sbjct: 810 ALALNVIGCVNIQMAY--KDGKVYVLEANPRSSRT----IPFVSKATGLPLAKIAAKAI 862



 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQID--------------------VDRS-VGLVLAHLKPDLAFN 56
           SG     +L + G +V  ++                    +    V  ++   +PD    
Sbjct: 29  SGSQACRSLREEGIEVVLVNSNPATIMTDPEMADAVYIEPITPDVVAQIIERERPDGILA 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +         +LE   +    + + A   + D+ R K  + S G  V  S  
Sbjct: 89  GLGGQTGLNITSELAEMGVLEKYGVKILGTPLKAIYDTEDRDRFKHAMESIGEKVPRSFA 148

Query: 113 VNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P +I+        G  V    Q +        + +   Q+L+E+
Sbjct: 149 CHTVDEAVAVIDRLGLPLIIRSAFTLGGTGSGVAHTVQDVRHIAEIGLNKSRIHQILVEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   + D         +       ++  +        +    ++ ++  
Sbjct: 209 SVLGWKEFEYEVMRDASDTCITICNMENIDPMG-IHTGESIVVTPSQTLSDADHQTLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +A+G  G     F ++        +E+N  P ++  S     +   GY   
Sbjct: 268 AIKIIRALGIEGGCNIQFAWN--DGDYRIVEVN--PRVSRSS--ALASKATGYPIA 317


>gi|242072484|ref|XP_002446178.1| hypothetical protein SORBIDRAFT_06g003090 [Sorghum bicolor]
 gi|241937361|gb|EES10506.1| hypothetical protein SORBIDRAFT_06g003090 [Sorghum bicolor]
          Length = 2326

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 28/174 (16%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  +I  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVIGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLAAQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|146308425|ref|YP_001188890.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           mendocina ymp]
 gi|145576626|gb|ABP86158.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Pseudomonas mendocina ymp]
          Length = 393

 Score = 49.5 bits (116), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 86/309 (27%), Gaps = 37/309 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                +D     ++  V+   +P      +
Sbjct: 24  GKEVVIELQRLGCEVIGVDRYANAPAMQVAHRSHVIDMLDGAALRAVIEQEQPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELEAEGFNVVPTARAAQLTMNREGIRRLAAETLGLPT-SPYHFSDTFEDYA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V+K D  +        +   G        V+G    
Sbjct: 143 AAVKSVGYPCVVKPIMSSSGKGQSVLKSDADLQRA--WDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               + +        P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHAGGTSFCAPIGHRQENGDYQESWQPQPMSAKALAESERVALTVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIFPEMAAYA-GYSFRELL 289
           G RG+   +        +V++ E++ +P  T         +S F   A    G     L+
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRPHDTGLVTLISQELSEFALHARAILGLPIP-LI 315

Query: 290 LWMVEDASC 298
             M   AS 
Sbjct: 316 RQMGPSASA 324


>gi|328766745|gb|EGF76798.1| hypothetical protein BATDEDRAFT_92361 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 740

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/251 (14%), Positives = 77/251 (30%), Gaps = 21/251 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLA----FNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K  D+A       +H   G   E+      +    + +    
Sbjct: 101 EAYCIGPAASSESYLRTDKILDIAKRSQSLAIHPGYGFLSENAGFADAVASSGLSFIGPP 160

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK ++    VPV P                  +  P +IK +KGG   
Sbjct: 161 AQAIIDMGSKSASKYIMQDAKVPVVPGYHGENQDPAYLKSEADKMGYPVLIKAVKGGGGK 220

Query: 140 GIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+ +++        L  S       ++    L+ +       +   V  D   +   +  
Sbjct: 221 GMRIVQSADEFYEMLESSKREGLKSFSDDKVLVEKYITRPRHVEVQVFADKYGNAVYLFE 280

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                     +             +  ++ + +   A  A +A+   G    +F+ D  +
Sbjct: 281 RDCSVQ----RRHQKILEEAPAPGLSSELRESLGTKAVAAAKAVNYVGAGTVEFILDTDT 336

Query: 255 RKVFWLEINVQ 265
            + +++E+N +
Sbjct: 337 NEFYFMEMNTR 347


>gi|299756496|ref|XP_002912209.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase subunit L
           [Coprinopsis cinerea okayama7#130]
 gi|298411703|gb|EFI28715.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase subunit L
           [Coprinopsis cinerea okayama7#130]
          Length = 1097

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 96/323 (29%), Gaps = 62/323 (19%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHL--------------KPDLAFNVLH----- 59
                   G K   +  DVD+  + + LA                + D    V H     
Sbjct: 387 VIRTARKLGIKTVAVYSDVDKDSLHVKLADEAYNIGPAPSAESYLRMDKIIQVCHQSGAQ 446

Query: 60  ------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
                 G   E+      L    I +      A      K  SK ++SS GVP  P    
Sbjct: 447 AVHPGYGFLSENAKFAEQLAAEGIVFIGPPASAIISMGSKSESKNIMSSAGVPCVPGYHG 506

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS-------IPLDLLQSSSWNH 162
                 F       I  P +IK + GG   G+  + +          +        S+ +
Sbjct: 507 DKQDPDFLFQEAQKIGFPVLIKAIHGGGGKGMRTVLEPTREAFEEGLLSAKRESLKSFGN 566

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
              L+ +       +   V  D   +V  +            + +           +  +
Sbjct: 567 DTVLVEKYIQRPRHVEVQVFADTLGNVVSLWERDCSVQ----RRNQKIIEEAPAPGLSPE 622

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           +  ++   A  A +A+   G    +F+FD  ++  +++E+N +              +  
Sbjct: 623 LRADLSAKAIAAARAVNYVGAGTVEFIFDNDTQDFYFMEMNTR----------LQVEHPV 672

Query: 281 ----AGYSFRELLLWMVEDASCL 299
                G    +L+ W +E A+  
Sbjct: 673 TEMITGL---DLVEWQLEVAAGN 692


>gi|224823998|ref|ZP_03697106.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
 gi|224603417|gb|EEG09592.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
          Length = 1145

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 50/149 (33%), Gaps = 1/149 (0%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 +  P ++K   GG   G+ V++ +  +   +  +           E Y++ +  
Sbjct: 148 QRMAAAVGYPLMLKASWGGGGRGMRVVENEGELAGAMEVARREAKSAFGNDEVYLEKLVR 207

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQ 236
               +    L  T   +         ++  +       PA    +    ++   A    +
Sbjct: 208 RAHHVEVQILGDTHGNLVHLFERDCSVQRRNQKVVERAPAPYLNESQRADLCEAALKLAR 267

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A+G       +FL D  +   +++E+N +
Sbjct: 268 AVGYTHAGTVEFLMDADTGAFYFIEVNPR 296


>gi|34398157|gb|AAQ67168.1| CAD [Acarteroptera recta]
          Length = 1296

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 82/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLEYVVQVIKAERPHGILL 427

Query: 57  VLHGNF------GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G          D         ++I  T    +           +       V    +
Sbjct: 428 TFGGQTALNCGVELDKAGIFSTYHIKILGTPIKSIIETEDRKIFAERIGEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG      +  +   +L   +  H +QL+I++
Sbjct: 488 VCSVAEALEAAERLKYPVMARAAFSLGGLGSGFANNNAELT--VLAQQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFRIVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|332143315|ref|YP_004429053.1| acetyl-CoA carboxylase [Alteromonas macleodii str. 'Deep ecotype']
 gi|327553337|gb|AEB00056.1| acetyl-CoA carboxylase [Alteromonas macleodii str. 'Deep ecotype']
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    D+++  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADKNLKHVLLADESICIGKASATESYLNIPRIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  NSIAIHPGYGFLAENADFAEAVEKSGFIFIGPKAETINLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLTDDAERNRAIAKRIGYPIIVKAAGGGGGRGMRVVRSESELVKAIETTQAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 GNATVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEQMR 253

Query: 226 EVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 AKIGDRCRRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|159902609|ref|YP_001549953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9211]
 gi|159887785|gb|ABX07999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9211]
          Length = 448

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +       + +       +    G+  L  +       
Sbjct: 149 ASEMGYPVMIKATAGGGGRGMRLVNGPDSIEDLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +   +  ++   A  A ++
Sbjct: 209 HVEVQILADRHG--NVVHLGERDCSIQRRHQKLLEESPSPALDSQLRIKMGEAAVSAAKS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 IKYEGAGTVEFLLDRQGN-FYFMEMNTR 293


>gi|312141263|ref|YP_004008599.1| phosphoribosylglycinamide formyltransferase purt [Rhodococcus equi
           103S]
 gi|311890602|emb|CBH49920.1| phosphoribosylglycinamide formyltransferase PurT [Rhodococcus equi
           103S]
          Length = 404

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 69/273 (25%), Gaps = 36/273 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                VD      +  ++   +P      +
Sbjct: 33  GKEVIIALQRLGVEVIAVDRYADAPAHQVAHRAHTVDMGDREQLLRLVEDERPHFVVPEI 92

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         L  +  T      +       R                       
Sbjct: 93  EAIATEALAEVEERGLAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYAFADSLDEVR 152

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  V +    +               L   +   G  + 
Sbjct: 153 AATERIGFPCVIKPVMSSSGKGQSVARSADDLEKSWEY--------ALSGGRVNKGRVI- 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSS-----LNSTHVLPAKIPLDIYKEVQRLAFL 233
                D   ++T + V   D   +                  P  +        + +A  
Sbjct: 204 VEGFVDFDYEITLLTVRAVDGTHFCEPIGHLQDSGDYIESWQPQAMSPAALAAARDVAEK 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              A+G RGI   +         V++ E++ +P
Sbjct: 264 VTTALGGRGIFGVELFV--KGDDVYFSEVSPRP 294


>gi|304392629|ref|ZP_07374569.1| pyruvate carboxylase [Ahrensia sp. R2A130]
 gi|303295259|gb|EFL89619.1| pyruvate carboxylase [Ahrensia sp. R2A130]
          Length = 1158

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 49/147 (33%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   G+  I+ +  +  ++L++           E Y++ +    
Sbjct: 160 MADEVGYPIMLKASWGGGGRGMRTIRSEDELENEVLEARREAAAAFGKDEVYLERLVERA 219

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L   +            ++  +       PA     +   E+   A       
Sbjct: 220 RHVEVQVLGDGQGTAVHLFERDCSVQRRNQKVVERAPAPYLSQEKRDELCGYALQIANET 279

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +FL D  S + F++E+N +
Sbjct: 280 NYLGAGTIEFLMDIDSEEFFFIEVNPR 306


>gi|293552870|ref|ZP_06673528.1| pyruvate carboxylase [Enterococcus faecium E1039]
 gi|291603004|gb|EFF33198.1| pyruvate carboxylase [Enterococcus faecium E1039]
          Length = 1142

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|294623496|ref|ZP_06702344.1| pyruvate carboxylase [Enterococcus faecium U0317]
 gi|291597090|gb|EFF28293.1| pyruvate carboxylase [Enterococcus faecium U0317]
          Length = 1058

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 63  FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 122

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 123 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 182

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 183 GYVNAGTVEFLV--EGDDFYFIEVNPR 207


>gi|294617450|ref|ZP_06697083.1| pyruvate carboxylase [Enterococcus faecium E1679]
 gi|291596304|gb|EFF27564.1| pyruvate carboxylase [Enterococcus faecium E1679]
          Length = 1142

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|289675152|ref|ZP_06496042.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. syringae FF5]
          Length = 393

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATSTLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKTVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|258616384|ref|ZP_05714154.1| pyruvate carboxylase [Enterococcus faecium DO]
          Length = 585

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|254294401|ref|YP_003060424.1| carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
 gi|254042932|gb|ACT59727.1| Carbamoyl-phosphate synthase L chain ATP-binding [Hirschia baltica
           ATCC 49814]
          Length = 666

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 77/277 (27%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
                +  G K   +  +   G +   L  +  F                          
Sbjct: 17  VIKTCKRLGVKTVVVYSEADAGSLAVELADETVFIGGSASSESYLVQDKIIAAVKETGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+      LE  +I +     +A     DK+ SK+  +  GV   P  + 
Sbjct: 77  AVHPGFGFLSENAEFARRLEKEKITFIGPNPIAIEAMGDKITSKKFAAEAGVSTVPGHMG 136

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +    IS     P +IK   GG   G+ +   D         S +   G      
Sbjct: 137 LIEDAEEAVKISQKVGYPVMIKASAGGGGKGMRIAWNDDEAREGFRDSKAEAKGSFGDDR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            +++        +    L          +     ++  +       P+       +    
Sbjct: 197 IFIEKFITEPRHIEIQVLGDKHGHCIHLNERECSIQRRNQKVVEEAPSPFIDAKTRAAMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +    +A+        +F+ D      ++LE+N +
Sbjct: 257 KQSIALAKAVNYDSAGTVEFIVDKDKN-FYFLEMNTR 292


>gi|256809978|ref|YP_003127347.1| MGS domain protein [Methanocaldococcus fervens AG86]
 gi|256793178|gb|ACV23847.1| MGS domain protein [Methanocaldococcus fervens AG86]
          Length = 618

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 98/313 (31%), Gaps = 45/313 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A   AL++ G +   I         D D S  L    +  +   N+           
Sbjct: 107 SVHAVL-ALKEMGIEAIIINNNPETVSTDYDTSDKLYFEPITFEDVLNIAEREKENGELL 165

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G    +  ++     + I  T    +  A   ++        +       +  
Sbjct: 166 GVIVQFGGQTAINLAMKLKKAGVNILGTTPEDINVAEDREEFSKLLKKLNIPQAEGGTAF 225

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY- 171
                ++    I  P +++P        + ++  +  +   + ++   +    +LI+++ 
Sbjct: 226 TKEEALEIAKRIGYPVLVRPSYVLGGRAMQIVYSEDELIEYMEEAVKVSEEHPVLIDKFL 285

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            D IEL    + D    +    +   +       +S  ++T + P  +P +I   V    
Sbjct: 286 EDAIELDVDAVCDGESVLIGAIMEHIEEAG---VHSGDSATVIPPQTLPKEIIDTVIDYT 342

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL--- 288
               +A+   G+    +        V+ LE N +   T     P ++   G    +L   
Sbjct: 343 AKLARALNIVGLLNVQYAV--KDGVVYVLEANPRASRT----VPYVSKSVGIPLAKLATK 396

Query: 289 ------LLWMVED 295
                 L  +++D
Sbjct: 397 VMLGKKLEELIKD 409


>gi|138519856|gb|AAI35129.1| LOC100125119 protein [Xenopus (Silurana) tropicalis]
          Length = 2232

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 419 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPITPEYVTQVIKNERPDGILL 478

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   Q +LE   +    + + +  ++ D+     K       V    +
Sbjct: 479 TFGGQTALNCGVELTKQGVLEKYNVRVLGTPVKSIEMTEDRKVFVEKMEEIGEHVAPSEA 538

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   + Q+ +     Q+L+++
Sbjct: 539 AFSLEQAQAAAERLGYPVLVRSAYALGGLGSGFASTKEELTALVCQAFAHT--TQVLVDK 596

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +     +                 + Y  ++  
Sbjct: 597 SLKGWKEIEYEVVRDAYNNCVTVCNMENVDPLGIHTGESIVVAPSQTLNDRE-YNMLRNT 655

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 656 AIKVIQHLGIVGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 711

Query: 291 WM 292
            +
Sbjct: 712 KL 713


>gi|148657309|ref|YP_001277514.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus sp. RS-1]
 gi|148569419|gb|ABQ91564.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Roseiflexus sp. RS-1]
          Length = 454

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    ++ +      A  +  DK   ++ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENPYFAEICAEYKLTFIGPDAHAIRMMGDKALGRKTMRDAGVPTVPGSRG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++  H I  P ++KP  GG   G+ V + +Q +      S +          
Sbjct: 137 ELRTLEEAVEVAHQIGYPVLLKPSGGGGGRGMRVAQNEQELIKAYPTSKAEAEAAFGNGA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             ++        +    L                 +          P+  +  ++ + + 
Sbjct: 197 LLMEKYLPQVRHVEIQVLADRYGHAIHLGERDCSSQRRHQKIVEEAPSPAVTPELRERMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    +AI        +FL DP     +++E+N +
Sbjct: 257 EAALKGVRAINYVNAGTMEFLLDP-DGNFYFIEMNTR 292


>gi|54293455|ref|YP_125870.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Lens]
 gi|54296497|ref|YP_122866.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Paris]
 gi|296106013|ref|YP_003617713.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|53750282|emb|CAH11676.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Paris]
 gi|53753287|emb|CAH14734.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Legionella pneumophila str. Lens]
 gi|295647914|gb|ADG23761.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila 2300/99 Alcoy]
 gi|307609270|emb|CBW98738.1| biotin carboxylase [Legionella pneumophila 130b]
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 98/321 (30%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGL------------------------VLAHLKP- 51
                 A ++ G +   +  DVD+ +                          +++  +  
Sbjct: 14  ALRILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+     I+E     +      +  L  DK+ +   + + GVP  
Sbjct: 74  DAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKAAGVPCV 131

Query: 109 PS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         +   ++    I  P +IK   GG   G+ V+  + ++   +  + S    
Sbjct: 132 PGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALTRSEAKA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 AFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQKVVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           + +E+      A + +  RG    +FLF       +++E+N +              +  
Sbjct: 252 LREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNTR----------IQVEHPV 299

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   ++ AS
Sbjct: 300 TEMITGI---DLIKEQIKIAS 317


>gi|69247252|ref|ZP_00604270.1| Pyruvate carboxylase [Enterococcus faecium DO]
 gi|257878115|ref|ZP_05657768.1| pyruvate carboxylase [Enterococcus faecium 1,230,933]
 gi|257881099|ref|ZP_05660752.1| pyruvate carboxylase [Enterococcus faecium 1,231,502]
 gi|257889686|ref|ZP_05669339.1| pyruvate carboxylase [Enterococcus faecium 1,231,410]
 gi|257892377|ref|ZP_05672030.1| pyruvate carboxylase [Enterococcus faecium 1,231,408]
 gi|260559164|ref|ZP_05831350.1| pyruvate carboxylase [Enterococcus faecium C68]
 gi|261207699|ref|ZP_05922384.1| pyruvate carboxylase [Enterococcus faecium TC 6]
 gi|289566275|ref|ZP_06446706.1| pyruvate carboxylase [Enterococcus faecium D344SRF]
 gi|293563703|ref|ZP_06678143.1| pyruvate carboxylase [Enterococcus faecium E1162]
 gi|293569397|ref|ZP_06680694.1| pyruvate carboxylase [Enterococcus faecium E1071]
 gi|294615873|ref|ZP_06695715.1| pyruvate carboxylase [Enterococcus faecium E1636]
 gi|314938771|ref|ZP_07846045.1| pyruvate carboxylase [Enterococcus faecium TX0133a04]
 gi|314941129|ref|ZP_07848026.1| pyruvate carboxylase [Enterococcus faecium TX0133C]
 gi|314947920|ref|ZP_07851325.1| pyruvate carboxylase [Enterococcus faecium TX0082]
 gi|314953025|ref|ZP_07855985.1| pyruvate carboxylase [Enterococcus faecium TX0133A]
 gi|314993346|ref|ZP_07858716.1| pyruvate carboxylase [Enterococcus faecium TX0133B]
 gi|314997593|ref|ZP_07862524.1| pyruvate carboxylase [Enterococcus faecium TX0133a01]
 gi|68194925|gb|EAN09394.1| Pyruvate carboxylase [Enterococcus faecium DO]
 gi|257812343|gb|EEV41101.1| pyruvate carboxylase [Enterococcus faecium 1,230,933]
 gi|257816757|gb|EEV44085.1| pyruvate carboxylase [Enterococcus faecium 1,231,502]
 gi|257826046|gb|EEV52672.1| pyruvate carboxylase [Enterococcus faecium 1,231,410]
 gi|257828756|gb|EEV55363.1| pyruvate carboxylase [Enterococcus faecium 1,231,408]
 gi|260074921|gb|EEW63237.1| pyruvate carboxylase [Enterococcus faecium C68]
 gi|260078082|gb|EEW65788.1| pyruvate carboxylase [Enterococcus faecium TC 6]
 gi|289161915|gb|EFD09784.1| pyruvate carboxylase [Enterococcus faecium D344SRF]
 gi|291587923|gb|EFF19774.1| pyruvate carboxylase [Enterococcus faecium E1071]
 gi|291591259|gb|EFF22926.1| pyruvate carboxylase [Enterococcus faecium E1636]
 gi|291604281|gb|EFF33775.1| pyruvate carboxylase [Enterococcus faecium E1162]
 gi|313588310|gb|EFR67155.1| pyruvate carboxylase [Enterococcus faecium TX0133a01]
 gi|313592173|gb|EFR71018.1| pyruvate carboxylase [Enterococcus faecium TX0133B]
 gi|313594900|gb|EFR73745.1| pyruvate carboxylase [Enterococcus faecium TX0133A]
 gi|313599989|gb|EFR78832.1| pyruvate carboxylase [Enterococcus faecium TX0133C]
 gi|313641909|gb|EFS06489.1| pyruvate carboxylase [Enterococcus faecium TX0133a04]
 gi|313645689|gb|EFS10269.1| pyruvate carboxylase [Enterococcus faecium TX0082]
          Length = 1142

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 44/147 (29%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   ++S      ++ S         E YV+      
Sbjct: 147 FAKQYGYPIMIKAALGGGGRGMRVAHDEKSAREGYERAKSEAKAAFGSDEVYVEKYIANP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L  T   V         ++        V P     +  ++    A     + +
Sbjct: 207 KHIEVQILGDTHGNVIHLFERDCSVQRRHQKVVEVAPCVSMNEQQRQKICQAAVQLMKYV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL        +++E+N +
Sbjct: 267 GYVNAGTVEFLV--EGDDFYFIEVNPR 291


>gi|328767721|gb|EGF77770.1| hypothetical protein BATDEDRAFT_35961 [Batrachochytrium
           dendrobatidis JAM81]
          Length = 715

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/253 (15%), Positives = 75/253 (29%), Gaps = 25/253 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+ +   +      A A   DK++SK +     V   P        +
Sbjct: 119 YGFLSENSQFVHALDEIGAVFIGPNERAMAAMGDKIQSKIIAKEAKVTTIPGFNGVVENV 178

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           D      + I  P +IK   GG   G+ +   D+        SSS            V+ 
Sbjct: 179 DHAVKIANEIGYPVMIKASAGGGGKGMRIAWNDKEAREAFKISSSEALSSFGDSRLLVEK 238

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +    +                ++  +       P   I +   K +   A  
Sbjct: 239 FIEDPRHIEIQLIGDQHGNTIYLPERECSIQRRNQKVIEEAPSVHIDIATRKAMGEQAVA 298

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             + +G       +FL DP     ++LE+N +              +       G    +
Sbjct: 299 LAKNVGYYSAGTCEFLVDPKRN-FYFLEMNTR----------LQVEHPITEYITGL---D 344

Query: 288 LLLWMVEDASCLR 300
           L+  M+  A+  +
Sbjct: 345 LVEQMIRVAAKQK 357


>gi|322386780|ref|ZP_08060404.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus cristatus
           ATCC 51100]
 gi|321269062|gb|EFX51998.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus cristatus
           ATCC 51100]
          Length = 455

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAKKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A +++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAESVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|313889670|ref|ZP_07823313.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           pseudoporcinus SPIN 20026]
 gi|313121967|gb|EFR45063.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           pseudoporcinus SPIN 20026]
          Length = 457

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 74/217 (34%), Gaps = 8/217 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +     +      DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPAAIIMDKMGDKINARSEMKKAGVPVIPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +   +    +  P ++K   GG   GI  +     +      +S           
Sbjct: 137 EVFSAQEAQEVADKVGYPVMLKASAGGGGKGIRKVTTASELREAFESASQEALSAFGNGA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            YV+ +      +    L  +   V         L+ ++       P+    +  ++   
Sbjct: 197 MYVEKVIYPARHIEMQILADSYGHVIHLGERDCSLQRNNQKVLEESPSIAIGETLRKEMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A QA+G       +FL D  S + +++E+N +
Sbjct: 257 DAAVKAAQAVGYENAGTIEFLLDEKSGQFYFMEMNTR 293


>gi|308488051|ref|XP_003106220.1| CRE-POD-2 protein [Caenorhabditis remanei]
 gi|308254210|gb|EFO98162.1| CRE-POD-2 protein [Caenorhabditis remanei]
          Length = 2220

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 51/145 (35%), Gaps = 5/145 (3%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
           H I  P +IK  +GG   GI    K +      ++ +       + + + V+    +   
Sbjct: 328 HNIGFPLMIKASEGGGGKGIRKCSKVEDFKSMFVEVTLEVPNSPVFLMKCVENARHIEVQ 387

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +V  +            K        V P     +  K +Q  A    + +G 
Sbjct: 388 LIADRYENVISVFTRDCSIQRRCQKIIEEAPASVAPM----ETRKRMQEDAVRIAKYVGY 443

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+ P     F+LE+N +
Sbjct: 444 ESAGTVEYLYLPEDDTYFFLELNPR 468


>gi|148360921|ref|YP_001252128.1| acetyl CoA carboxylase biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
 gi|148282694|gb|ABQ56782.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila str. Corby]
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 97/321 (30%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGL------------------------VLAHLKP- 51
                 A ++ G +   +  DVD+ +                          +++  +  
Sbjct: 14  ALRILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+     I+E     +      +  L  DK+ +   + + GVP  
Sbjct: 74  DAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKAAGVPCV 131

Query: 109 PS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         +   ++    I  P +IK   GG   G+ V+  + ++   +  + S    
Sbjct: 132 PGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALTRSEAKA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
                  Y++        +    L   +            ++          P   I  +
Sbjct: 192 AFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQKVVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           + +E+      A + +  RG    +FLF       +++E+N +              +  
Sbjct: 252 LREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNTR----------IQVEHPV 299

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   ++ AS
Sbjct: 300 TEMITGI---DLIKEQIKIAS 317


>gi|318040501|ref|ZP_07972457.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CB0101]
          Length = 450

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AESMGYPVMIKATAGGGGRGMRLVPSPDQLDNLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             I  D+ K++   A  A + 
Sbjct: 209 HVEVQVLADRHG--NVVHVGERDCSIQRRHQKLLEEAPSVAINADLRKQMGDAAVAAART 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D  +   +++E+N +
Sbjct: 267 IGYEGAGTVEFLVD-RTGHFYFMEMNTR 293


>gi|317492163|ref|ZP_07950593.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacteriaceae
           bacterium 9_2_54FAA]
 gi|316919868|gb|EFV41197.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacteriaceae
           bacterium 9_2_54FAA]
          Length = 392

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                  +++  V+   +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMQVAHRSHVVNMLDAQALKAVIERERPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATSMLVELERDGQKVVPCARATQLTMNREGIRRLAAETLQLPT-SRYRFADTENEFN 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P +IKP+   S  G  +I+   ++        + + G     +  V+G    
Sbjct: 143 EAAQEIGFPCIIKPVMSSSGKGQSLIRSADNMAQA--WQYAQSGGRSGEGKVIVEGSVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   +++  +     +       +          P  +      +   +A     A+
Sbjct: 201 DFEITLLTINACDGLHFCAPIGH--RQQDGDYRESWQPQAMSDIALAKAHDIAGKVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|315443092|ref|YP_004075971.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Mycobacterium sp. Spyr1]
 gi|315261395|gb|ADT98136.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Mycobacterium sp. Spyr1]
          Length = 400

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/275 (12%), Positives = 80/275 (29%), Gaps = 27/275 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+    AL+  G +   +D                        +  ++   +PDL    +
Sbjct: 24  GREVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMTDPEQLRALIEAERPDLVVPEI 83

Query: 59  HGNFGEDGLV-QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                      +A      IP   +  L       +  + + +     P      +    
Sbjct: 84  EAIATPALEALEAEGVATVIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLEELR 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 +  P V+KP+   S  G   I   + +      + S +   +  +I +     +
Sbjct: 144 TAIDGTVGYPCVVKPVMSSSGKGQSKIDGPEDVAPAWEYAMSGSRVSNTRIIVEGFVDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +   +     +        + S        P  +P       +++A    +
Sbjct: 204 YEITLLTVRARGASGEVQTQFCEPIGHRQVSGDYVESWQPHPMPSTALDRSRQIAKAVTE 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +G +GI   +         V++ E++ +P   GM
Sbjct: 264 NLGGQGIFGVELFV--KGDDVWFSEVSPRPHDTGM 296


>gi|311351600|gb|ADP92985.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351602|gb|ADP92986.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351610|gb|ADP92990.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351612|gb|ADP92991.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351622|gb|ADP92996.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351640|gb|ADP93005.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351642|gb|ADP93006.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351644|gb|ADP93007.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351646|gb|ADP93008.1| D-alanine-D-alanine ligase [Clostridium perfringens]
 gi|311351648|gb|ADP93009.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 196

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/191 (23%), Positives = 89/191 (46%), Gaps = 9/191 (4%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV---NRFTMDSQHLISPPYVIKPL 133
           IP++  G L+SA+ MDK  +K++++   V      +V   +    +    +  P  IKP 
Sbjct: 12  IPFSGCGPLSSAICMDKDMTKRILAFGNVRTARWEMVSSVDEIDYEKIENLGYPVFIKPN 71

Query: 134 KGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GGSS+   +++  +++   +L++    +  +++IE+Y+ G E+TC ++    L V  I 
Sbjct: 72  NGGSSVATTLVESKEAVKDAVLEAL--KYDTEVMIEEYIKGDEITCPIIDGKMLPVLAIK 129

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                F                  ++  D++KEV+++A   ++ + C   +R D L    
Sbjct: 130 PKGKFFD--IASKYEDGGADEFIVELNEDLHKEVEKMALETYKLLKCDVYARVDMLV--R 185

Query: 254 SRKVFWLEINV 264
               + LE+N 
Sbjct: 186 DNIPYVLEVNT 196


>gi|218526270|gb|ACK86542.1| carbamoyl-phosphate synthase [Strangalia bicolor]
          Length = 723

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I          + I A   + D+    + ++     V    +
Sbjct: 191 TFGGQTGLNCGVELETMGIFNKYNCKILGTPIKAIIDTEDRKVFSERITEIGEKVAPSMA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 251 AHSVHEALEAAEQLGYPVMARAAFSLGGLGSGFANNKEELKA--LALQALAHSCQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNKEYNMLRTT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|254569906|ref|XP_002492063.1| Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate
           transcarbamylase (ATCase) [Pichia pastoris GS115]
 gi|238031860|emb|CAY69783.1| Bifunctional carbamoylphosphate synthetase (CPSase)-aspartate
           transcarbamylase (ATCase) [Pichia pastoris GS115]
 gi|328351447|emb|CCA37846.1| carbamoyl-phosphate synthase (glutamine hydrolyzing), aspartate
           carbamoyltransferase Ura1 (EC:2.1.3.2 2.4.2.-3.5.2.3
           6.3.5.5) [Pichia pastoris CBS 7435]
          Length = 2215

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+ H +PD  + 
Sbjct: 456 SGSQAIKALNEEGIYTILINPNIATIQTSKGLADKVYFLPVTADFVRKVIKHERPDAIYC 515

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     +   +    +   +  
Sbjct: 516 TFGGQTALSVGIQLKDEFESLGVKVLGTQIDTVITTEDRELFARAMDEINEKCAKSRSAS 575

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +    +    I  P +++       LG      D  +    L + ++    Q+LIE+ +
Sbjct: 576 NLAEAKVAVKAIGYPVIVRAAYALGGLGSGFANNDDELIA--LCNKAFATSPQVLIERSM 633

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 634 KGW-KEIEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 692

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 693 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 742


>gi|306921325|dbj|BAJ17742.1| methylcrotonoyl-Coenzyme A carboxylase 1 [synthetic construct]
          Length = 725

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESAWREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|259015997|gb|ACV89281.1| putative CAD trifunctional protein [Strangalia bicolor]
          Length = 669

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 81  SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I          + I A   + D+    + ++     V    +
Sbjct: 141 TFGGQTGLNCGVELETMGIFNKYNCKILGTPIKAIIDTEDRKVFSERITEIGEKVAPSMA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 201 AHSVHEALEAAEQLGYPVMARAAFSLGGLGSGFANNKEELKA--LALQALAHSCQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNKEYNMLRTT 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 AIKVIRHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|167628414|ref|YP_001678913.1| acetyl-CoA carboxylase, biotin carboxylase [Heliobacterium
           modesticaldum Ice1]
 gi|167591154|gb|ABZ82902.1| acetyl-CoA carboxylase, biotin carboxylase [Heliobacterium
           modesticaldum Ice1]
          Length = 454

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/141 (13%), Positives = 47/141 (33%), Gaps = 2/141 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   ++ +   L  + +           Y++        +   
Sbjct: 159 YPVMIKASAGGGGRGMRIAHSEKDLFNALQTAQAEAEAAFGNKAVYIEKFIEEPRHIEFQ 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
            +                ++  +       P+     ++ KE+   A LA +++      
Sbjct: 219 IMADQFGNTVYLGERDCSIQRRNQKLLEEAPSPALSPELRKEMGEQAVLAAKSVNYVNAG 278

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL D      +++E+N +
Sbjct: 279 TVEFLLDKH-GHYYFIEMNTR 298


>gi|62089054|dbj|BAD92974.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) variant [Homo
           sapiens]
          Length = 741

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 210 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESAWREAKKSFNDDAMLIEKFVDTP 269

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 270 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 325

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 326 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 372

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 373 EWQLRIAAGEK 383


>gi|225878037|emb|CAX65073.1| C. elegans protein T28F3.5b, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1593

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
           P +IK  +GG   GI   +          +         + + + +DG   +   ++GD 
Sbjct: 215 PMMIKASEGGGGKGIRKCENMDDFKRLFKEVELEFPNSPIFLMKCMDGARHVEIQILGDK 274

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             DV  ++           K        ++P     ++ +++++ A      +G      
Sbjct: 275 HGDVIALSSRDCTIQRRCQKVIEEAPASIVPG----EVMQKMKKDAIAFANFVGYYSAGT 330

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            + LF P + + F+LE+N +
Sbjct: 331 VELLFIPTTNEYFFLELNPR 350


>gi|53803709|ref|YP_114441.1| phosphoribosylglycinamide formyltransferase 2 [Methylococcus
           capsulatus str. Bath]
 gi|81823623|sp|Q606K7|PURT_METCA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|53757470|gb|AAU91761.1| phosphoribosylglycinamide formyltransferase 2 [Methylococcus
           capsulatus str. Bath]
          Length = 400

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/285 (11%), Positives = 75/285 (26%), Gaps = 29/285 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLAH-LKPDLAFNVL 58
           GK  A +L+  G +V  +D                    D      L    +P      +
Sbjct: 23  GKEVAISLQRYGVEVIAVDRYAGAPAQQVAHRSHVVDMTDPGAIHRLVEFERPHFVVPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L E+      +  +       R                       
Sbjct: 83  EAIATDALVEIERAGLAEVVPNARAVQLTMNREGIRRLAAEKLGLPTSPYAFADSCAALA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI--- 175
           ++   I  P  +KP+   S  G  +++    +        +   G        V+G    
Sbjct: 143 EAAAKIGFPCFVKPVMSSSGKGQSLLESPSDVQAA--WDHARQGGRVGASRVIVEGRIDF 200

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +    ++   +      A           + +        P  +     +  + +A    
Sbjct: 201 DFEITLLTVRAPVSGGDAGIAFCEPVGHRQQAGDYVESWQPQSLNPKARERAEAIARTVV 260

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            A+G RG+   +        +V++ E++ +P      +   ++  
Sbjct: 261 DALGGRGLFGVELFV--RGDEVWFSEVSPRP--HDTGMVTMVSQA 301


>gi|294142452|ref|YP_003558430.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella violacea DSS12]
 gi|293328921|dbj|BAJ03652.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella violacea DSS12]
          Length = 1518

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL---- 152
               GVPV P         +      + I  P ++K ++GG   GI V+++   +      
Sbjct: 1065 QDNGVPVVPGSHGILSNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERQGDMISLFQQ 1124

Query: 153  -DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V +       A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPP----ELKEKVLQYTLDLGNATDYMGAGTVEFIYNLDTNEVYFMEMNTR 1234


>gi|225630129|ref|YP_002726920.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia sp. wRi]
 gi|225592110|gb|ACN95129.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia sp. wRi]
          Length = 691

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/212 (11%), Positives = 69/212 (32%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +         ++ +K+ +K+     GV V P  +      
Sbjct: 86  YGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAAKKAGVNVVPGYMGKISDA 145

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 146 AHAAQVAEEIGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEK 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++   +    
Sbjct: 206 YIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVS 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +G       +F+ D   +  ++LE+N +
Sbjct: 266 LAKQVGYFSAGTVEFVVD-KDQNFYFLEVNTR 296


>gi|188583117|ref|YP_001926562.1| urea carboxylase [Methylobacterium populi BJ001]
 gi|179346615|gb|ACB82027.1| urea carboxylase [Methylobacterium populi BJ001]
          Length = 1179

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    + +                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCHSAEELAERFAAVERTARASFGDARVYLERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    + +   +   A    +++ 
Sbjct: 207 HVEVQIFGDGRGRVVALGERDCSLQRRNQKVIEETPAPGLSEPVRARLHAAAVALGESVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP      +LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPQREDFSFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|8886469|gb|AAF80469.1|AF163150_1 acetyl-CoA carboxylase [Glycine max]
          Length = 539

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 84/252 (33%), Gaps = 31/252 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+   +   L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAELVKFLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A  A  +IG  G+   +FL D      +++E+N       P         EM      S
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHP-------VTEM-----IS 374

Query: 285 FRELLLWMVEDA 296
             +L+   +  A
Sbjct: 375 STDLIEEQIRVA 386


>gi|78065163|ref|YP_367932.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia sp.
           383]
 gi|77965908|gb|ABB07288.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. 383]
          Length = 455

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 74/222 (33%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +       + + 
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +   +   +   V+ DA  +   +            K         +P +    +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAYKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRR----L 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 253 IDRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|332800374|ref|YP_004461873.1| carbamoyl-phosphate synthase, large subunit [Tepidanaerobacter sp.
           Re1]
 gi|332698109|gb|AEE92566.1| carbamoyl-phosphate synthase, large subunit [Tepidanaerobacter sp.
           Re1]
          Length = 1063

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 89/296 (30%), Gaps = 32/296 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           S  A  +A ++AG++   I+ +                       V  ++   KP     
Sbjct: 574 SVHAVWAA-KEAGYRTVIINNNPETVSTDFNTADCLYFEPLYIEDVLSIIDREKPLGVIV 632

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +         + I  T    +  A   +K            P   +      
Sbjct: 633 QFGGQTAINLAATLESYGVRILGTDVKSIDLAEDREKFDDLLSELGIPRPKATAARSVEE 692

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +++P        + ++   + +   +  +   +    +LI++Y+ G E
Sbjct: 693 ALAKAGEIGFPMLVRPSYVLGGRAMEIVYNMKELKNYMENAVEASSEKPVLIDRYIGGTE 752

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D    +    +   +        S     H   +   ++   +      L   
Sbjct: 753 VEVDAVCDGKEVLIPGIMEHIERAGIHSGDSIAVYPHQTLSPTAVEKIVDYTTRIAL--- 809

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYAGYSFRE 287
            +  +G+    F+    + KV+ +E+N       P M+ ++  P +      +  E
Sbjct: 810 RLSVKGLINIQFVV--ENDKVYIIEVNPRSSRTVPYMSKITQIPMVNIATKIALGE 863



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  I+ +                          V+   KPD     
Sbjct: 30  GTQACLSLREEGLEVVLINSNPATIMTDSHIADKVYIEPLTPEFAAKVIRREKPDGLLAT 89

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC-------GVPVCPS 110
           L G  G +     + E   +      +L + L+  K    + +           VP    
Sbjct: 90  LGGQVGLNL-AVELAEKGILDREGVKLLGTPLTSIKKAEDRELFKKLMEDIGEPVPDSRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       +       P +++P       G  V   ++ +          +   Q+L+E+
Sbjct: 149 VHSLEEARNFAKEAGLPLIVRPAYTLGGTGGGVANTEEELMEITYNGLRLSRIHQVLLEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I +   +       ++  +        +    Y +++  
Sbjct: 209 SLLG-MKEIEFEVIRDGKDQCICICDMENIDPVGIHTGDSVVVAPSQTLTDAEYNKLKAA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +F   +A+G  G     +  D  +   + +E+N  P ++  S     +  +GY   ++  
Sbjct: 268 SFKIIRALGIEGGCNVQYALDSTTGNYYVIEVN--PRVSRSS--ALASKASGYPIAKITA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325


>gi|289642536|ref|ZP_06474679.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
 gi|289507624|gb|EFD28580.1| Carbamoyl-phosphate synthase L chain ATP-binding [Frankia symbiont
           of Datisca glomerata]
          Length = 662

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              ++ P ++K   GG   G+ ++++   +   +  +             +++       
Sbjct: 151 AADLAFPLLVKAAYGGGGRGMRIVRQVDELAEAVAGAQREAASAFGNATVFLEHYVERPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +                     ++          P+  +  ++ + +   A  A  AIG
Sbjct: 211 HIEVQIFADQHGNAVHLFERECSIQRRYQKIIEEAPSVAVDDELRERLGSAAVAAANAIG 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+ D    + F+LE+N +
Sbjct: 271 YVGAGTVEFVLDQQ-GQFFFLEVNTR 295


>gi|262171744|ref|ZP_06039422.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           MB-451]
 gi|261892820|gb|EEY38806.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           MB-451]
          Length = 391

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SHYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|257453350|ref|ZP_05618649.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp.
           3_1_5R]
 gi|317059881|ref|ZP_07924366.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           3_1_5R]
 gi|313685557|gb|EFS22392.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           3_1_5R]
          Length = 176

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/173 (16%), Positives = 69/173 (39%), Gaps = 11/173 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL   
Sbjct: 5   ANEVGYPVLVRPSYVLGGQGMEICHDEVNLVKYLEASFSRDASSPVLIDKYLNGIELEVD 64

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +       +E+  +     +A+ 
Sbjct: 65  AICDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYKGTEEEILDITRKIARALE 120

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            +G+    F+      +++ +E+N +   T     P ++  +G    E+   M
Sbjct: 121 VKGMMNIQFI--AYQNELYVIEVNPRSSRT----VPYISKISGLPVIEIASRM 167


>gi|222102905|ref|YP_002539944.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221739506|gb|ACM40239.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 457

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 56/157 (35%), Gaps = 11/157 (7%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                +    I  P +IK   GG   G+ +++   ++   +  +       + + +  + 
Sbjct: 149 MADIAEIAAKIGYPVIIKAAGGGGGRGMRIVRDAAALADAVSITREEARRAFGNPELYME 208

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +       +   V+ D   +   +            K      +  +PA    D+   V 
Sbjct: 209 KFLEKPRHVEIQVLCDNFGNAVWLGHRDCSMQRRHQKVVEEAPSPGIPA----DVAATVG 264

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A Q IG RG+   +FL+   + + +++E+N +
Sbjct: 265 ARCVAACQRIGYRGVGTFEFLY--ENGEFYFIEMNTR 299


>gi|219853735|ref|YP_002470857.1| hypothetical protein CKR_0392 [Clostridium kluyveri NBRC 12016]
 gi|219567459|dbj|BAH05443.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
          Length = 1149

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + + L   K D      +G   E+  +    E   I +         +  DK++
Sbjct: 68  LDIDEIINIALKK-KVDAIHPG-YGFLAENPELARKCEQAGIEFIGPTSSMMEMLGDKIK 125

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V     VP  P I     T +     +     P ++K   GG   G+ ++++++ + 
Sbjct: 126 SKIVAKKADVPTIPGIQEPIKTEEQALEFARYCGYPVMVKAAAGGGGRGMRIVREEKDLL 185

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +       + +++    +   +    L      V         ++      
Sbjct: 186 ESYNSAKSESMKAFGSEDIFIEKYIESPKHIEVQILGDKHGNVVHLYERDCSIQRRHQKV 245

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +   E+   A    +++G R     +FL D      +++E+N +
Sbjct: 246 IEFTPSIALSDEKRNEICEDALKIARSVGYRSAGTLEFLVDKHGNH-YFIEMNTR 299


>gi|182413493|ref|YP_001818559.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutus terrae PB90-1]
 gi|177840707|gb|ACB74959.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutus terrae PB90-1]
          Length = 454

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 83/282 (29%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGF--------------------KVSQIDVDRSVGLVLAHLKP------- 51
                 A  + G                     +   I  ++S    L   +        
Sbjct: 14  ALRIVRACRELGIKTLAVYSEADVQSLHVQLADEAICIGGNKSADSYLRADRIISAAEIA 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D+  + +H   G   E+       E   I +      +  +  DK  +K+ V   GVP+ 
Sbjct: 74  DV--DAIHPGYGFLSENPKFAEQCESCNIKFIGPKSKSIRMMGDKSIAKETVRKAGVPIV 131

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           P     +            I  P +IK + GG   G+ +   D S   +   + S     
Sbjct: 132 PGSDGPVGSEADATKIARKIGYPVIIKAVAGGGGRGMRIAHNDVSFAKEYHTARSEAEKA 191

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
                 YV+        +    L  +   V         ++          P+     D+
Sbjct: 192 FGNGAVYVEKYIEKPRHIEFQILADSHGKVIHLGERDCSVQRRHQKLIEESPSPFLSADL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++ + A  A +A         +FL D      +++E+N +
Sbjct: 252 RKKMGKAAVRAAEAAEYENAGTIEFLVDAKGN-YYFIEMNTR 292


>gi|168183675|ref|ZP_02618339.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Bf]
 gi|237797054|ref|YP_002864606.1| biotin carboxylase [Clostridium botulinum Ba4 str. 657]
 gi|182673266|gb|EDT85227.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Bf]
 gi|229263687|gb|ACQ54720.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum Ba4 str. 657]
          Length = 448

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPFSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKMGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIADEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIVHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+G +     +FL D      +++E+N +
Sbjct: 257 DVATKAAKAVGYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|153953084|ref|YP_001393849.1| pyruvate carboxylase [Clostridium kluyveri DSM 555]
 gi|146345965|gb|EDK32501.1| Pyc [Clostridium kluyveri DSM 555]
          Length = 1146

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 82/235 (34%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  + + L   K D      +G   E+  +    E   I +         +  DK++
Sbjct: 65  LDIDEIINIALKK-KVDAIHPG-YGFLAENPELARKCEQAGIEFIGPTSSMMEMLGDKIK 122

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK V     VP  P I     T +     +     P ++K   GG   G+ ++++++ + 
Sbjct: 123 SKIVAKKADVPTIPGIQEPIKTEEQALEFARYCGYPVMVKAAAGGGGRGMRIVREEKDLL 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + S +       + +++    +   +    L      V         ++      
Sbjct: 183 ESYNSAKSESMKAFGSEDIFIEKYIESPKHIEVQILGDKHGNVVHLYERDCSIQRRHQKV 242

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +   E+   A    +++G R     +FL D      +++E+N +
Sbjct: 243 IEFTPSIALSDEKRNEICEDALKIARSVGYRSAGTLEFLVDKHGNH-YFIEMNTR 296


>gi|39935213|ref|NP_947489.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhodopseudomonas
           palustris CGA009]
 gi|39649064|emb|CAE27585.1| possible biotin carboxylase [Rhodopseudomonas palustris CGA009]
          Length = 660

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 53/150 (35%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++K   ++P  L  + S            ++   
Sbjct: 154 MVREAERIGFPIMIKAVAGGGGRGMRLVKDAAALPDALRSARSEAQSAFGDPTVILERAI 213

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           L    +          A          ++          P+    + + +++  +A  A 
Sbjct: 214 LQPRHIEIQVFGDRYGAGIHLGERDCSVQRRHQKLIEEAPSPAVSEALREQMGAVAVNAV 273

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG  G    +FL D      +++E+N +
Sbjct: 274 KAIGYEGAGTLEFLLDAEGN-FYFMEMNTR 302


>gi|327350488|gb|EGE79345.1| hypothetical protein BDDG_02284 [Ajellomyces dermatitidis ATCC
           18188]
          Length = 2625

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKDEFEELGVRVLGTPIDTIITTEDRELFARSMEALGEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +  + +    L + ++    Q+LIE+ +
Sbjct: 663 TLEEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPEQLRE--LCTKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAI 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|294676752|ref|YP_003577367.1| pyruvate carboxylase [Rhodobacter capsulatus SB 1003]
 gi|294475572|gb|ADE84960.1| pyruvate carboxylase [Rhodobacter capsulatus SB 1003]
          Length = 1144

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I     +   + +            E Y++ + L   
Sbjct: 149 AAEIGYPLMLKASWGGGGRGMRPILGPDELVEKVREGRREAEAAFGNGEGYLEKMILRAR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  +   +         ++  +       PA    +    EV  LA     A+G
Sbjct: 209 HVEVQLLGDSHGGLYHLYERDCTVQRRNQKVVERAPAPYLTEAQRAEVCALALKIGNAVG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +     +FL D  + K +++E+N +
Sbjct: 269 YQNAGTVEFLMDMDTSKFYFIEVNPR 294


>gi|260434771|ref|ZP_05788741.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. WH
           8109]
 gi|260412645|gb|EEX05941.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. WH
           8109]
          Length = 448

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AEEMGYPVMIKATAGGGGRGMRLVPDASQLESLYKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  D+ + +   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPDLRRRMGDAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|239612543|gb|EEQ89530.1| bifunctional pyrimidine biosynthesis protein pyrABCN [Ajellomyces
           dermatitidis ER-3]
          Length = 2681

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKDEFEELGVRVLGTPIDTIITTEDRELFARSMEALGEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +  + +    L + ++    Q+LIE+ +
Sbjct: 663 TLEEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPEQLRE--LCTKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAI 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|261203024|ref|XP_002628726.1| bifunctional pyrimidine biosynthesis protein pyrABCN [Ajellomyces
           dermatitidis SLH14081]
 gi|239590823|gb|EEQ73404.1| bifunctional pyrimidine biosynthesis protein pyrABCN [Ajellomyces
           dermatitidis SLH14081]
          Length = 2544

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 91/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 543 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 602

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 603 TFGGQTALQVGIQLKDEFEELGVRVLGTPIDTIITTEDRELFARSMEALGEKCAKSASAS 662

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG    +  + +    L + ++    Q+LIE+ +
Sbjct: 663 TLEEAMEVVKDIGFPVIVRAAYALGGLGSGFAEDPEQLRE--LCTKAFAASPQVLIERSM 720

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 721 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAI 779

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 780 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 829


>gi|238061489|ref|ZP_04606198.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
 gi|237883300|gb|EEP72128.1| carbamoyl-phosphate synthase subunit L, ATP-binding [Micromonospora
           sp. ATCC 39149]
          Length = 690

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/156 (14%), Positives = 53/156 (33%), Gaps = 1/156 (0%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            + +     D+  + + P ++K   GG   G+ ++     +   +  +            
Sbjct: 156 GVPMLPTWTDTAEITAFPVLVKASTGGGGRGMRIVSDPAGLAEAVASARREAAAAFGDGT 215

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +V+        +       +   V         ++          PA +P  + + +  
Sbjct: 216 VFVERYVERGRHVEVQVFGDSHGTVLALGERDCSIQRRHQKIVEEAPAVLPDGVRQRLHA 275

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A +A+G  G    +FL  P   + F+LE+N +
Sbjct: 276 AAVAAARAVGYVGAGTVEFLLAP-DGEFFFLEMNTR 310


>gi|294495299|ref|YP_003541792.1| pyruvate carboxylase subunit A [Methanohalophilus mahii DSM 5219]
 gi|292666298|gb|ADE36147.1| pyruvate carboxylase subunit A [Methanohalophilus mahii DSM 5219]
          Length = 498

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 48/143 (33%), Gaps = 3/143 (2%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+ V+   + +   L    +           +++        + 
Sbjct: 151 IGYPLMVKASAGGGGIGMKVVYTPEELTRALSSIRNVAASTFGDSTVFIEKYLEEPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
              L  ++            ++          P   +  ++ +++   A  A + IG   
Sbjct: 211 IQILADSQGNCLYLGDRECSIQRRHQKLIEEAPSPIMTPELRRDMGEAAVKAAKKIGYVN 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL+       ++LE+N +
Sbjct: 271 AGTVEFLY--SKGDYYFLEVNTR 291


>gi|260173908|ref|ZP_05760320.1| pyruvate carboxylase subunit A [Bacteroides sp. D2]
          Length = 504

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 47  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 107 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 167 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 226

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +   + K++   A  A +A+   G    +FL D      +
Sbjct: 227 RECSVQRRNQKIVEETPSVFVTPALRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 285

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 286 FLEMNTR 292


>gi|189218381|ref|YP_001939022.1| Biotin carboxylase [Methylacidiphilum infernorum V4]
 gi|189185239|gb|ACD82424.1| Biotin carboxylase [Methylacidiphilum infernorum V4]
          Length = 458

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/278 (13%), Positives = 85/278 (30%), Gaps = 34/278 (12%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A  D G K   +  D   +S+ + LA                + D   +     
Sbjct: 18  ALRIIRACRDLGVKTLAVYSDVDEKSLHVQLADEAICIGKGPATESYLRMDRIISAAEIG 77

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+     I     I +            +K+ ++      GVPV P 
Sbjct: 78  DVDAIHPGYGFLAENPHFAEICANCNIKFIGPKAATLKKMGNKVMARFHARKAGVPVVPG 137

Query: 111 ILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                 +        H I  P +IK + GG   G+ +   D S+    + +         
Sbjct: 138 SEGVVESEKEALKISHQIGYPVIIKAVAGGGGRGMRIAHNDVSLVQGFVAARLEAEKSFG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++ +      +    +  T+  +         ++  +       P+ +   I ++
Sbjct: 198 DGSIYIEKLIEDPRHVEFQIIADTKGKIFHVGERDCSVQRRNQKLVEESPSPVVDPILRK 257

Query: 227 VQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              +++    +++   G+   ++L D      +++E+N
Sbjct: 258 KMGKISVRLAESVDYEGVGTIEYLVDKFGN-FYFIEMN 294


>gi|225163428|ref|ZP_03725745.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutaceae bacterium
           TAV2]
 gi|224801970|gb|EEG20249.1| acetyl-CoA carboxylase, biotin carboxylase [Opitutaceae bacterium
           TAV2]
          Length = 454

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 92/316 (29%), Gaps = 51/316 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---VGLVLAHL--------------KPDLAF------ 55
                 A  + G K   +  +     + + LA                + D         
Sbjct: 14  ALRIVRACRELGIKTLAVYSEADVQSLHVQLADEAICIGGPRGADSYLRADRIIAAAEIA 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             + +H   G   E+       E   I +      +  +  DK  +K  V    VP+ P 
Sbjct: 74  NVDAIHPGYGFLSENAKFAEQCESCNIKFIGPKSKSIQMMGDKAVAKDTVRKAKVPIVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               I      +     I  P +IK + GG   G+ +   D S+  +   + S       
Sbjct: 134 SDGPIESEAEAIKLARKIGYPVIIKAVAGGGGRGMRIAHNDVSLGKEFNVARSEAEKAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYK 225
               YV+        +    L  +   V         ++          P+      + K
Sbjct: 194 NGSVYVEKYIEKPRHIEFQILADSHGKVVHLGERDCSVQRRHQKLIEESPSPFLTPSLRK 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAY 280
           E+ R A  A +A         +FL D    K +++E+N       P +T           
Sbjct: 254 EMGRHAVRAAEAASYENAGTIEFLVDAK-GKYYFIEMNTRIQVEHP-VTE--------EV 303

Query: 281 AGYSFRELLLWMVEDA 296
            G    +L+   ++ A
Sbjct: 304 TGI---DLIKEQIKVA 316


>gi|624702|gb|AAA60991.1| ligase [Enterococcus casseliflavus]
          Length = 197

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 33/179 (18%), Positives = 67/179 (37%), Gaps = 1/179 (0%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            +   L      +  V S+  + +                   P   KP + GSS GI  
Sbjct: 20  CMNKWLLHQAAAAIGVQSAPTILLTNHANQQEQIEAFIQTHGFPVFFKPNEAGSSKGITK 79

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +   + I   L ++ ++     L        I          ++   +       F+ +E
Sbjct: 80  VTCVEEIASALKEAFTYCSAVLLQKNIAGVEIGCGILGNDSLTVGACDAISLVDGFFDFE 139

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
            KY  +++   +PA +P  I  +V+  A L ++++G +G++R DF       +++  EI
Sbjct: 140 EKYQLISAKITVPAPLPETIETKVKEQAQLLYRSLGLKGLARIDFFVTDQ-GELYLNEI 197


>gi|77359233|ref|YP_338808.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Pseudoalteromonas haloplanktis TAC125]
 gi|76874144|emb|CAI85365.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Pseudoalteromonas haloplanktis TAC125]
          Length = 446

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/283 (15%), Positives = 81/283 (28%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP------------------- 51
                 A ++ G K   +    DR +  VL         KP                   
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGKPAATESYLDIPRIIAAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+      +E     +         L  DK+ +   +   GVP  
Sbjct: 74  DAV--AIHPGYGFLAENADFADQVEQSGFVFIGPTGDTIRLMGDKVSAIAAMRKAGVPCV 131

Query: 109 PSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P             M     I  P +IK   GG   G+ V++ +  +   +  +      
Sbjct: 132 PGSDGPVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELIDSIALTQQEAKQ 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 FFGNGMVYMEKYLENPRHIEVQILADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|326533420|dbj|BAK05241.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 1840

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 84/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  ++   +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKIIQKERPDGIYV 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 524 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAN 583

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 584 NVEEAMRVVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQILIERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 642 KGW-KEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDTDYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|213407396|ref|XP_002174469.1| acetyl-CoA carboxylase [Schizosaccharomyces japonicus yFS275]
 gi|212002516|gb|EEB08176.1| acetyl-CoA carboxylase [Schizosaccharomyces japonicus yFS275]
          Length = 2289

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 76/235 (32%), Gaps = 15/235 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +  +LA  K  + F    G  G             I    + +     S + + +  
Sbjct: 184 NPRLPEMLAASKQKIVFI---GPPGNAMRSLGDKISSTIVAQSARVPCMPWSGNGIDTVH 240

Query: 99  VVSSCGV-------PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           V    G+            +      +     +  P +IK  +GG   GI  +++ +   
Sbjct: 241 VDDDTGIVTVDEDTYSKACVTSPEQGLQVAKEVGFPIMIKASEGGGGKGIRKVEEPEKFA 300

Query: 152 LDLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               Q  +   G  + I +       L   ++ D   +   +            K     
Sbjct: 301 QCYEQVMAEVPGSPVFIMKLAGHARHLEVQLLADQYGNNISLFGRDCSVQRRHQKIIEEA 360

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + PA    + + +++R A    + +G       ++L++P   K ++LE+N +
Sbjct: 361 PVSIAPA----ETFHQMERCAVRLGELVGYVSAGTVEYLYEPEENKFYFLELNPR 411


>gi|190346302|gb|EDK38354.2| hypothetical protein PGUG_02452 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 720

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 41/144 (28%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 422 AAKLEYPIMVKSTAGGGGIGLQKVDSEADIERVFQTVQHQGKSYFGDSGVFLERFVEDAR 481

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     L+  +       PA    +     +++ A      + 
Sbjct: 482 HVEIQMFGDGYGKAIALGERDCSLQRRNQKIIEETPAPNLPEATRARMRKAAESLGATMN 541

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
            +     +F++D    + ++LE+N
Sbjct: 542 YKCAGTVEFIYDQRRDEFYFLEVN 565


>gi|146417509|ref|XP_001484723.1| hypothetical protein PGUG_02452 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 720

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 15/144 (10%), Positives = 41/144 (28%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 422 AAKLEYPIMVKSTAGGGGIGLQKVDSEADIERVFQTVQHQGKSYFGDSGVFLERFVEDAR 481

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     L+  +       PA    +     +++ A      + 
Sbjct: 482 HVEIQMFGDGYGKAIALGERDCSLQRRNQKIIEETPAPNLPEATRARMRKAAESLGATMN 541

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
            +     +F++D    + ++LE+N
Sbjct: 542 YKCAGTVEFIYDQRRDEFYFLEVN 565


>gi|326405142|ref|YP_004285224.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
 gi|325052004|dbj|BAJ82342.1| pyruvate carboxylase [Acidiphilium multivorum AIU301]
          Length = 1147

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 14/235 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V    K D      +G   E+           I +            +K+ ++Q+
Sbjct: 67  EEVLRVAEEAKADAIHPG-YGFLSENPEFAEACAARGIAFIGPAPRTMRTLGNKVAARQL 125

Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             S GVPV P+                 I  P ++K   GG   G+  I+  + +   + 
Sbjct: 126 AESVGVPVMPASAPLPRDAAEIGRIAAEIGYPVMLKASWGGGGRGMRPIEGAEGLAEQVE 185

Query: 156 QSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            +       + + +    +       +   ++GD+  ++  +            +     
Sbjct: 186 TARREALAAFGNDEVYFEKLVRRARHVEVQILGDSHGNLVHLFERDCTIQ----RRHQKV 241

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +     + +   A    +A   R     +FL D  + + +++E+N +
Sbjct: 242 IERAPAPYLDAATREGLCAAALAIGRATDYRNAGTVEFLLDRETGRFYFIEVNPR 296


>gi|294676088|ref|YP_003576703.1| carbamoyl-phosphate synthase large subunit [Rhodobacter capsulatus
           SB 1003]
 gi|294474908|gb|ADE84296.1| carbamoyl-phosphate synthase, large subunit [Rhodobacter capsulatus
           SB 1003]
          Length = 1110

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 82/315 (26%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV-------------------QAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +  +                   +  +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTSLALADMGVLEKFGVELIGANREAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                            R  +     I  P +I+P       G  V          +   
Sbjct: 149 ISAPKLENGKYDISAGVRQALIDLEHIGLPAIIRPAFTLGGTGGGVAYNRDDYEAIVRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +     D   I     +     +      +      
Sbjct: 209 LDASPVAQVLIDESLLGWKEYEMEVVRDKADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPKDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 49/316 (15%), Positives = 105/316 (33%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTKAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   LE   IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRVEQDNGTLHGVIVQFGGQTPLKLANALEAEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q+++   +    + + +      +    +  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQQLLNDLELKQPVNGIASTEAQAFEIAGRVGYPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   +  + + +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 TEHLKRYITTAVTVSGDSPVLLDSYLSGAIEVDVDALSDGKTVHVAGIMQHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++        A+G  G+    F        ++ LE+N +
Sbjct: 807 HSGDSACSLPPYSLSRETVAELKAQTEKMALALGVVGLMNVQFAI--KDGVIYVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|163760009|ref|ZP_02167093.1| probable pyruvate carboxylase protein [Hoeflea phototrophica
           DFL-43]
 gi|162282967|gb|EDQ33254.1| probable pyruvate carboxylase protein [Hoeflea phototrophica
           DFL-43]
          Length = 1152

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 21/153 (13%), Positives = 50/153 (32%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I+  + +  ++ ++           E Y++
Sbjct: 149 MDEVARMAEEIGYPIMLKASWGGGGRGMRAIRDPKDLVREVTEAKREAMAAFGKDEVYLE 208

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
            +      +    L  T             ++  +       PA    +   +E+   + 
Sbjct: 209 KLVERARHVESQILGDTHGNAVHLFERDCSVQRRNQKVVERAPAPYLTEAQRQELAAYSL 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A G  G    ++L D  +   +++E+N +
Sbjct: 269 KIANATGYVGAGTVEYLMDIDTGAFYFIEVNPR 301


>gi|148261652|ref|YP_001235779.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
 gi|146403333|gb|ABQ31860.1| pyruvate carboxylase [Acidiphilium cryptum JF-5]
          Length = 1164

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 73/235 (31%), Gaps = 14/235 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  V    K D      +G   E+           I +            +K+ ++Q+
Sbjct: 84  EEVLRVAEEAKADAIHPG-YGFLSENPEFAEACAARGIAFIGPAPRTMRTLGNKVAARQL 142

Query: 100 VSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             S GVPV P+                 I  P ++K   GG   G+  I+  + +   + 
Sbjct: 143 AESVGVPVMPASAPLPRDAAEIGRIAAEIGYPVMLKASWGGGGRGMRPIEGAEGLAEQVE 202

Query: 156 QSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
            +       + + +    +       +   ++GD+  ++  +            +     
Sbjct: 203 TARREALAAFGNDEVYFEKLVRRARHVEVQILGDSHGNLVHLFERDCTIQ----RRHQKV 258

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +     + +   A    +A   R     +FL D  + + +++E+N +
Sbjct: 259 IERAPAPYLDAATREGLCAAALAIGRATDYRNAGTVEFLLDRETGRFYFIEVNPR 313


>gi|126739202|ref|ZP_01754896.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126719819|gb|EBA16527.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 682

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 53/182 (29%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L          +     ++  +       P+    +  ++     +    +A+G 
Sbjct: 209 IEIQVLCDAHGNGIYLNERECSIQRRNQKVVEEAPSPFLDEETRKAMGEQSVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 TSAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|330936922|gb|EGH41045.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. pisi str. 1704B]
          Length = 393

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATSTLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEDLKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|325688704|gb|EGD30713.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK115]
          Length = 455

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     I    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAIYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|307594352|ref|YP_003900669.1| carbamoyl-phosphate synthase large subunit [Vulcanisaeta distributa
           DSM 14429]
 gi|307549553|gb|ADN49618.1| carbamoyl-phosphate synthase, large subunit [Vulcanisaeta
           distributa DSM 14429]
          Length = 1030

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/312 (13%), Positives = 89/312 (28%), Gaps = 41/312 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A ++ G     ++ +                       + +V+   +PD    
Sbjct: 25  SGIQALKAYKEEGLTTVLVNPNVATVQTTRVFADRVYLVPIKPEFLEMVIERERPDAIAC 84

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       +            +++  T    + SALS    +         V    +
Sbjct: 85  GFGGQTALSACINLNDLGILSKYGIKVLGTPIEGIRSALSRQLFKDLMNKHGIPVLPSKT 144

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P + +        G  V   D  +     ++ + +   ++LIE+
Sbjct: 145 TYSLNEALSAARELGYPVLARVSFNLGGAGAFVAHDDDELISKYHKALAMSEIKEVLIEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G +     +       +   V   +     +              +  D Y+  + +
Sbjct: 205 YIGGWKEIEFEVMRDQYGESVAVVCMENVDPMGVHTGDSVVVAPC-LTLTNDEYQRARLI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-------TPVSIFPEMAAYA-- 281
           +     AI   G        +P   +++ +E N  P M       +  S +P     A  
Sbjct: 264 SIGVANAINLVGECNVQVAINPRGPEMYVIETN--PRMSRSSALASKASGYPLAYIAAKL 321

Query: 282 --GYSFRELLLW 291
             GY   EL+  
Sbjct: 322 TLGYRLSELINR 333


>gi|254934029|gb|ACT87623.1| carbamoylphosphate synthetase [Meganola phylla]
          Length = 975

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALQEEKIQTLLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + V++    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKVFERYNVTVLGTPIQSIVDTEDRKIFAEKVNAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   +L     +H DQL+I++
Sbjct: 496 VTSIEEALVAARQIGYPVMARSAFSLGGLGSGFANNEDEL--KILAHHGLSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIQHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|254934001|gb|ACT87609.1| carbamoylphosphate synthetase [Hemerophila felis]
          Length = 977

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 377 SGSQAVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 436

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + +   +    + I +   + D+     K  +    V    +
Sbjct: 437 TFGGQTALNCGVELEKSKVFKKYNVNILGTPIQSIIDTEDRKIFAEKVNLIGQKVAPSAA 496

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 497 VSSIDQAVLAAKQIGYPVMARAAFSLGGLGSGFANNEEELKT--LAHQAFSHSDQLIIDK 554

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 555 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYYMLRNT 613

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 614 AIKVIRHFGIIGECNIQYALNPCSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 669

Query: 291 WM 292
            +
Sbjct: 670 KL 671


>gi|254563034|ref|YP_003070129.1| ATP-dependent urea carboxylase [Methylobacterium extorquens DM4]
 gi|254270312|emb|CAX26308.1| ATP-dependent urea carboxylase [Methylobacterium extorquens DM4]
          Length = 1176

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    Q +                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCHSGQELAERFAAVERTARASFGDARVYLERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    D +   +   A    +++ 
Sbjct: 207 HVEVQIFGDGRGRVIALGERDCSLQRRNQKVIEETPAPGLSDAVRARLHAAAVALGESVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP      +LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPDREDFSFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|222446081|ref|ZP_03608596.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
 gi|222435646|gb|EEE42811.1| hypothetical protein METSMIALI_01730 [Methanobrevibacter smithii
           DSM 2375]
          Length = 367

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G     I V +   
Sbjct: 103 LTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQGQGGKDIKVAESLD 162

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +     +       D  L E++++G      +             P     +       
Sbjct: 163 DVKEYFEEF------DHALCEKFIEG--SEISIEVLGYNGEYVPLSPIYKGETTLEGIHP 214

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           LN     P  +       VQR A+   + +G  GI   DF+F    ++++ +E+N +P
Sbjct: 215 LNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQQLYAIEVNTRP 272


>gi|152992645|ref|YP_001358366.1| hypothetical protein SUN_1052 [Sulfurovum sp. NBC37-1]
 gi|151424506|dbj|BAF72009.1| conserved hypothetical protein [Sulfurovum sp. NBC37-1]
          Length = 299

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/291 (14%), Positives = 89/291 (30%), Gaps = 32/291 (10%)

Query: 20  KACASALEDAGFKVSQIDVD---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQA 70
           K     L++   +    D++           +   L   + DL F+   G   +  +   
Sbjct: 20  KKIVKQLKERDIETIT-DINLRHAVAKNGHILHDKLRVEELDLFFSYNAGEQTQYQVFLY 78

Query: 71  ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI---SPP 127
                 IP  ++    + L+ DK ++  ++   GV      L +R        I      
Sbjct: 79  QALNRVIPMINTYDAFA-LTEDKFQTSFLLRQHGVATPSFKLCHRDDGHELKKIIKKWDK 137

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASL 187
            V KP  G   +G+  I+ + ++   L   +          +     +E           
Sbjct: 138 MVYKPTDGWGGVGLTKIESEATLDTLLPFLNQM--------DLRFFYVEKFVNYDNTDFR 189

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                      +           +     +    +   ++  LA  A +  G   I+  D
Sbjct: 190 VDIVDGEFVGCYGRKASGTDWRTNVTSGGSVFMREPNDDIINLAKKAAKVCGT-DIAGVD 248

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR----ELLLWMVE 294
            ++D    +   LE+N  P        PE     G +F     +L++ +++
Sbjct: 249 IIYDLEREEYVVLEVNGIPAFAT----PEQ-EKMGLNFNDKKIDLIVNLID 294


>gi|148642421|ref|YP_001272934.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
 gi|148551438|gb|ABQ86566.1| carbamoyl-phosphate synthase, large subunit, CarB
           [Methanobrevibacter smithii ATCC 35061]
          Length = 367

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/178 (19%), Positives = 70/178 (39%), Gaps = 8/178 (4%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L+ DK+++K+  +  GVP     ++ +   +S+  +  P V+K  +G     I V +   
Sbjct: 103 LTSDKIKTKEFYNEIGVPTPQYQILAKDDFESKLKMEFPVVLKQGQGQGGKDIKVAESLD 162

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +     +       D  L E++++G      +             P     +       
Sbjct: 163 DVKEYFEEF------DHALCEKFIEG--SEISIEVLGYNGEYVPLSPIYKGETTLEGIHP 214

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           LN     P  +       VQR A+   + +G  GI   DF+F    ++++ +E+N +P
Sbjct: 215 LNKIKTAPCLVEGLDNNLVQRTAYKVAKNLGSDGIFEMDFMFSKDEQQLYAIEVNTRP 272


>gi|124022033|ref|YP_001016340.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9303]
 gi|123962319|gb|ABM77075.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9303]
          Length = 448

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AKGMGYPVMIKATAGGGGRGMRLVTTPDQLENLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   +        +   +      +             +  ++   +   A  A ++
Sbjct: 209 HVEVQILSDRHG--NVIHLGERDCSIQRRHQKLLEESPSPALTPELRLRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRK-GDFYFMEMNTR 293


>gi|133931226|ref|NP_503072.2| hypothetical protein T28F3.5 [Caenorhabditis elegans]
 gi|115530286|emb|CAB05298.2| C. elegans protein T28F3.5a, partially confirmed by transcript
           evidence [Caenorhabditis elegans]
          Length = 1679

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/140 (17%), Positives = 53/140 (37%), Gaps = 5/140 (3%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDA 185
           P +IK  +GG   GI   +          +         + + + +DG   +   ++GD 
Sbjct: 215 PMMIKASEGGGGKGIRKCENMDDFKRLFKEVELEFPNSPIFLMKCMDGARHVEIQILGDK 274

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             DV  ++           K        ++P     ++ +++++ A      +G      
Sbjct: 275 HGDVIALSSRDCTIQRRCQKVIEEAPASIVPG----EVMQKMKKDAIAFANFVGYYSAGT 330

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            + LF P + + F+LE+N +
Sbjct: 331 VELLFIPTTNEYFFLELNPR 350


>gi|33863855|ref|NP_895415.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9313]
 gi|33635438|emb|CAE21763.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. MIT 9313]
          Length = 448

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 43/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AKGMGYPVMIKATAGGGGRGMRLVTTPDQLENLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   +        +   +      +             +  ++   +   A  A ++
Sbjct: 209 HVEVQILSDRHG--NVIHLGERDCSIQRRHQKLLEESPSPALTPELRLRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRK-GDFYFMEMNTR 293


>gi|327473606|gb|EGF19026.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK408]
          Length = 455

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQRHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|315453076|ref|YP_004073346.1| biotin carboxylase [Helicobacter felis ATCC 49179]
 gi|315132128|emb|CBY82756.1| biotin carboxylase [Helicobacter felis ATCC 49179]
          Length = 449

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/253 (18%), Positives = 83/253 (32%), Gaps = 13/253 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     I +        AL  DK ++K V+   GVPV 
Sbjct: 80  FEADAIFPG-YGFLSENQNFVEICSHHGIEFIGPDAKVMALMGDKSKAKAVMREAGVPVI 138

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +      +     I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 139 EGSEGVLRGYEEALKVAERIGFPIIIKAANGGGGRGMRVVEDPSLLKNLYLAAETEALSA 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
                 Y++        +    L      V          +          PA +    +
Sbjct: 199 FGDGSVYIEKFIKDPKHIEVQILADKHGNVLHIGERDCSTQRRQQKLIEETPAMVLDPCV 258

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
              +   A  A + IG  G    +FL D   +  +++E+N +  +       EM   +G 
Sbjct: 259 RARLLETATKAAKHIGYVGAGTFEFLLDGNGQDFYFMEMNTR--LQVEHTVSEM--VSGL 314

Query: 284 SFRELLLWMVEDA 296
           +F   + WM+  A
Sbjct: 315 NF---IEWMIRIA 324


>gi|262193582|ref|YP_003264791.1| acetyl-CoA carboxylase, biotin carboxylase [Haliangium ochraceum
           DSM 14365]
 gi|262076929|gb|ACY12898.1| acetyl-CoA carboxylase, biotin carboxylase [Haliangium ochraceum
           DSM 14365]
          Length = 444

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 48/323 (14%), Positives = 97/323 (30%), Gaps = 58/323 (17%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 AL + G +   +  +     +      +                          
Sbjct: 14  ALRIIRALRELGIRSVAVHSEADASALHVKFADEKVCIGPAPSARSYLAVPSIISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   ED     + E  +I +      +  L  DK+R+++ ++  GVPV P 
Sbjct: 74  RADAIHPGYGFLAEDPEFAEVCEKCDIQWIGPRPDSMRLMGDKIRAREAMAKAGVPVLPG 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGD 164
              I        +   I  P ++K   GG   G+ ++++   +  D       +    G+
Sbjct: 134 SGAINTEAELHQAVEQIGFPLILKAAAGGGGRGMKIVREPGRLVADWSLARTEAQAAFGN 193

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
             +  +          +   A    T             ++          PA     DI
Sbjct: 194 PDMYAERYCERPRHIEIQVVADHHGTAA---HLGERECSVQRRHQKVVEEAPAASLDSDI 250

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
             ++   A  A +AIG R +   +FL D    + +++E+N +              +   
Sbjct: 251 RDQMTDAALKAVRAIGYRNLGTLEFLLDE-DGQFYFMEMNTR----------LQVEHPVT 299

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
               G    +L+   +  A+  R
Sbjct: 300 ELITGV---DLVREQIRIAAGER 319


>gi|46562190|ref|YP_009102.1| hypothetical protein DVUA0062 [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447727|gb|AAS94393.1| conserved domain protein [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311235442|gb|ADP88295.1| protein of unknown function DUF201 [Desulfovibrio vulgaris RCH1]
          Length = 431

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 82/298 (27%), Gaps = 47/298 (15%)

Query: 19  GKACASALEDAGFKV-------SQI--------------DVDRSVGLVLAHLK------- 50
            +  + +L  AGF V         I              D        +  ++       
Sbjct: 14  ARVVSRSLHRAGFTVLAASSTPWPICAYSRYVRRTFTHADPKHDESRFIDDIRRICETQG 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+   +L             L    +          A   DK R+ +V    G+ V   
Sbjct: 74  VDVLLPIL--RECAVIARHRHLFGPGVRMLLGDAATLADFGDKYRTYEVARDAGLAVPEY 131

Query: 111 ILVNRFTMDSQHLISPPYVI--KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   D   L + P     KP+ G    G+      Q +   +   +     D   +
Sbjct: 132 RRAADLAADPAALAAFPCPCLAKPVWGWGGYGMHECASPQEVAARITAMTDRQRED-YFM 190

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Q + G  +   ++ +A              Y      S+L  +                
Sbjct: 191 QQRMPGDVVCVAMLCEAGQMHACDTFRIVSSYPRRHGQSTLRESVRA---------DAAV 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                    +G  G  ++DF+ DP++   + ++IN +      S+    +   G  F 
Sbjct: 242 DALRTLLAHVGWTGPCQADFIIDPVTGTPYLIDINAR---YWNSLI--QSTARGVDFP 294


>gi|73667251|ref|YP_303267.1| carbamoyl phosphate synthase large subunit [Ehrlichia canis str.
           Jake]
 gi|72394392|gb|AAZ68669.1| carbamoyl-phosphate synthase large subunit [Ehrlichia canis str.
           Jake]
          Length = 1076

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 39/303 (12%), Positives = 94/303 (31%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L+  G+++  I         D + +    +               KP     
Sbjct: 29  SGTQACKVLKQEGYRIILINSNPATIMTDPEIANSTYIEPITPSIIEKIIIKEKPSAILP 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G    +       Q ILE   +    +   A   + D+   +Q +   GV    SI+
Sbjct: 89  TVGGQTALNVAIKLCEQGILEKHNVKLIGATKEAIQKAEDRNLFRQAMDKIGVKYPKSII 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P      +G  +    +    +++   S +   ++ +++
Sbjct: 149 IKSVDEIKHALEYIGLPAIIRPSFTLGGIGGGISYNKEEFQKNVMYGLSISPISEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D   +     +     +      +          +  K     
Sbjct: 209 SIIGWKEFEMEVMRDNKDNCIVVCSIENLDPMGVHTGDSITVAPALTLRDTEYQKMRDIS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G S   F  +P + + +  +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 FSILREIGVDTGGSNVQFAVNPKNDEDLLVIEMN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 AKL 327



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 10/180 (5%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VD 173
               +    ++ P + +P        + +I+   ++   L    +      LL++Q+  +
Sbjct: 705 NEVYECVQSLAFPILARPSYVLGGQSMSIIRDSNALSNYLTIHKNIFDNGSLLLDQFLTN 764

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            +E+    + D         +   +        S+ +           D   E  +   L
Sbjct: 765 AVEVDVDAICDGESVYITGIMEHIEEAGIHSGDSACSLPAYTLTSEITDTIAEYTKKIAL 824

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A Q IG       +  +     +++ LE+N +   T     P +A   G    ++   ++
Sbjct: 825 ALQVIGF-----INIQYAIQDGEIYILEVNPRASRT----VPFIAKATGIPIAKIATKIL 875


>gi|149639224|ref|XP_001505307.1| PREDICTED: similar to 3-methylcrotonyl-CoA carboxylase
           biotin-containing subunit [Ornithorhynchus anatinus]
          Length = 696

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
           +   I  P +IK ++GG   G+ + K ++     L  +       ++    L+ +     
Sbjct: 167 NAGRIGYPVMIKAVRGGGGKGMRIAKSEKEFQEQLESARREAKKSFDDDSMLIEKFVDTP 226

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K +   A  A
Sbjct: 227 RHIEVQVFGDQYGNAVYLFERDCSVQ----RRHQKIIEEAPGPGIEPEVRKRLGEAAVKA 282

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 283 AKAVNYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 329

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 330 EWQLRIAAGEK 340


>gi|327403248|ref|YP_004344086.1| acetyl-CoA carboxylase, biotin carboxylase [Fluviicola taffensis
           DSM 16823]
 gi|327318756|gb|AEA43248.1| acetyl-CoA carboxylase, biotin carboxylase [Fluviicola taffensis
           DSM 16823]
          Length = 444

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 80/216 (37%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   I +  +     A   DK  +K  + + GVP  P     +   
Sbjct: 82  YGFLSENEKFSRVCQEHNIKFIGALPEQIAGMGDKATAKATMIAAGVPCIPGSEGLLADV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                +  ++  P ++K   GG   G+ ++ K++ +      +       + +    + +
Sbjct: 142 EDARKTALVVRYPVILKATAGGGGKGMRIVWKEEDLEAAWDSARQEAGAAFGNDGIYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   + GD   +V  ++           +             +  ++ +++ +
Sbjct: 202 YIEEPRHIEIQIAGDQYGNVCHLSERDCSIQ----RRHQKLVEETPSPFMTDELREKMGQ 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A +A+   G+   +FL D  +R  +++E+N +
Sbjct: 258 AAIKAAKAVNYEGVGTVEFLVD-KNRDFYFMEMNTR 292


>gi|315922173|ref|ZP_07918413.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313696048|gb|EFS32883.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 511

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 75/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K        H        G   E+       +   I +    
Sbjct: 54  EAYCVGPAASKESYLNIEKIIEVAKAAHADAIHPGYGFLSENATFARRCQEEGIIFIGPN 113

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
                   DK+ ++  +   GVPV P    N  +++    +      P ++K   GG   
Sbjct: 114 PETMEAMGDKIAARIKMIEAGVPVVPGTQDNLKSVEEAIELCNKIGYPVMLKASMGGGGK 173

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +I   + +      + S +         Y++        +    L      V     
Sbjct: 174 GMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLCE 233

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   +   + K++   A  A +A+   G    +FL D      +
Sbjct: 234 RECSVQRRNQKIVEETPSVFVTPALRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-YY 292

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 293 FLEMNTR 299


>gi|262275628|ref|ZP_06053437.1| phosphoribosylglycinamide formyltransferase 2 [Grimontia hollisae
           CIP 101886]
 gi|262219436|gb|EEY70752.1| phosphoribosylglycinamide formyltransferase 2 [Grimontia hollisae
           CIP 101886]
          Length = 391

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D   D                   ++  ++A  +PD     +
Sbjct: 22  GKEVAIECQRLGIEVIACDRYPDAPAMQVAHRSHVVDMLDGDALANIIAQEQPDYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P   +  L       +  + + +                  
Sbjct: 82  EAIATDRLVALEKTGVNVVPTARATQLTMNREGIRRLAAEELGLPT-SPYAFADTQEDFE 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V++    I        +   G     +  V+G    
Sbjct: 141 RAIENVGFPCVVKPVMSSSGKGQSVVRSLADIQSA--WEYAQEGGRAGRGKVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     K  + +A     A+
Sbjct: 199 DYEITLLTVSAIDGIHFCAPIGHRQEDG--DYRESWQPQAMSEKARKAAEDIARKVVTAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 257 GGYGLFGVELFV--KGDEVMFSEVSPRPHDTGM 287


>gi|110669189|ref|YP_659000.1| carbamoyl phosphate synthase large subunit [Haloquadratum walsbyi
           DSM 16790]
 gi|109626936|emb|CAJ53408.1| carbamoyl-phosphate synthase, large subunit (glutamine-hydrolyzing)
           [Haloquadratum walsbyi DSM 16790]
          Length = 1088

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 93/325 (28%), Gaps = 53/325 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + V+ GG        +  G+             AL + G     I+ +            
Sbjct: 591 VVVVGGGP-------IRIGQGVEFDYCSVHAVRALRELGIDAHVINNNPETVSTDYDTSD 643

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL------LEIPYTHSGI 84
                      V  V      D       G    +       EL       +I  T    
Sbjct: 644 GLFFEPITAEEVADVAEATNADGVMVQFGGQTSVNIGHPLETELDRRGLDCDILGTSVDA 703

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +  A   D+            PV  S       +   + +  P +++P        + V+
Sbjct: 704 MDLAEDRDRFNRLMSSLDIKQPVGGSATSEPEALTLANDLGYPVLVRPSYVLGGRAMDVV 763

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +   + ++   +    +LI+Q+  D IEL    + D    +    +   +     
Sbjct: 764 HSDVELQEYIEEAVRVSPDKPILIDQFLADAIELDVDAVADGERTIIGGVMEHVESAG-- 821

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  +    V+ +      A+   G+            +V+ LE N
Sbjct: 822 -VHSGDSACMIPPRSLSAETMARVRTVTEDIATALDTVGLLNVQLAI--KDDEVYVLEAN 878

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
            +   T     P ++   G    +L
Sbjct: 879 PRSSRT----VPFVSKATGVPIAKL 899


>gi|253686649|ref|YP_003015839.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|251753227|gb|ACT11303.1| acetyl-CoA carboxylase, biotin carboxylase [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITDELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|328542689|ref|YP_004302798.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [polymorphum
           gilvum SL003B-26A1]
 gi|326412435|gb|ADZ69498.1| putative Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha)
           [Polymorphum gilvum SL003B-26A1]
          Length = 664

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 52/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVDGI 175
              I  P +IK   GG   G+ ++++ Q     L  + +           LL     +  
Sbjct: 157 AERIGYPVLIKASAGGGGRGMRLVERPQDFAAALETARTEARSAFGDDSVLLERYIANPR 216

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            L   ++GD+  ++  +            K         LP      +   +   A    
Sbjct: 217 HLEVQLVGDSHGNLVHLFERDCSVQRNNQKVLEEAPAPNLPG----AVRARLHDTALKLG 272

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG R     +F+ +    + ++LE+N +
Sbjct: 273 RAIGYRSAGTVEFIMEAGGSEPYFLEMNTR 302


>gi|320102161|ref|YP_004177752.1| pyruvate carboxylase [Isosphaera pallida ATCC 43644]
 gi|319749443|gb|ADV61203.1| pyruvate carboxylase [Isosphaera pallida ATCC 43644]
          Length = 1157

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 18/151 (11%), Positives = 50/151 (33%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    +  P ++K   GG   G+ V++    +   +  ++          E +++  
Sbjct: 155 DAHELAKQLGYPVIVKASMGGGGRGMRVVETPDQLDHAIESAAREAGSAFGNPEVFLERY 214

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234
                 +    L      +         ++        + PA     D+ +++ + A   
Sbjct: 215 IQRARHIEVQLLGDCHGTLVHLHERDCSVQRRHQKIIEMAPALGLTPDLRRQIHQAALAI 274

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +G       +FL D  +   +++E+N +
Sbjct: 275 GHKVGYTNAGTVEFLLDVDTNTFYFIEVNPR 305


>gi|259417012|ref|ZP_05740932.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
 gi|259348451|gb|EEW60228.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter sp.
           TrichCH4B]
          Length = 676

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 21/183 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  +      +    +A+G 
Sbjct: 209 IEIQVLCDAHGNGVYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQSVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGNKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|257055589|ref|YP_003133421.1| carbamoyl-phosphate synthase large subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256585461|gb|ACU96594.1| carbamoyl-phosphate synthase large subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 1111

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/307 (13%), Positives = 88/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG      L   G +VS +         D + +    +  + PD                
Sbjct: 29  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEFADSTYIEPVTPDFVEKVIVAEREQGRPI 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 L G            + +LE   I    + I A     D+ + K +V + G  V
Sbjct: 89  DSLLATLGGQTALNCAVALHERGVLEKYGIELIGADIDAIQRGEDRQKFKDIVRAVGGGV 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P VI+P      LG  +    + +          +   +
Sbjct: 149 PRSAVCHSMEEVRETVAELGLPVVIRPSFTMGGLGSGMAHTPEELERMASIGLEESPVTE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ V G +     +     D   +     +     +      +          +   
Sbjct: 209 VLIEESVLGWKEYELELMRDRNDNVVVVCSIENIDPMGVHTGDSVTVAPAMTLTDREYQH 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDVGIAVLREVGVDTGGCNIQFAVNPEDGRMVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKIAAKL 331


>gi|227114023|ref|ZP_03827679.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           carotovorum subsp. brasiliensis PBR1692]
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTDDMDANRVHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITDELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|222612694|gb|EEE50826.1| hypothetical protein OsJ_31236 [Oryza sativa Japonica Group]
          Length = 2214

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +IK   GG   GI  +  D  +     Q      G  + I +       L   ++ D
Sbjct: 221 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 280

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +V  +            K        V P++   ++ +     A    + +   G +
Sbjct: 281 KHGNVAALHSRDCSVQRRHQKIIEEGPITVAPSETVKELEQ----AARRLAKCVHYVGAA 336

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+   + + ++LE+N +
Sbjct: 337 TVEYLYSMETGEYYFLELNPR 357


>gi|218184383|gb|EEC66810.1| hypothetical protein OsI_33225 [Oryza sativa Indica Group]
          Length = 1768

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +IK   GG   GI  +  D  +     Q      G  + I +       L   ++ D
Sbjct: 221 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 280

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +V  +            K        V P++   ++ +     A    + +   G +
Sbjct: 281 KHGNVAALHSRDCSVQRRHQKIIEEGPITVAPSETVKELEQ----AARRLAKCVHYVGAA 336

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+   + + ++LE+N +
Sbjct: 337 TVEYLYSMETGEYYFLELNPR 357


>gi|169335857|ref|ZP_02863050.1| hypothetical protein ANASTE_02283 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258595|gb|EDS72561.1| hypothetical protein ANASTE_02283 [Anaerofustis stercorihominis DSM
           17244]
          Length = 1141

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 5/229 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  +      D      +G   E+ +  A  E   I +         L  +K+ +K+ 
Sbjct: 67  EAIIELAKAKNIDAIHPG-YGFLSENPIFAAECEKAGIKFIGPSSDVIELLGNKVNAKEA 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
               GV V   + V       +    I  P +IK   GG   G+ V +++  +      +
Sbjct: 126 AIEAGVSVLDGVKVETVEEAKEISSKIGYPVIIKASAGGGGRGMRVCEREDDLRNQFESA 185

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                      E +++        +    L      +         ++          P+
Sbjct: 186 VREAKKAFNNGEVFIEKYVRAPRHVEAQILADEYGHIVHLFERDCSIQRRHQKIIEFSPS 245

Query: 218 KIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   +  ++          + +G       +FL D  + K +++E+N +
Sbjct: 246 QSISEETRKAICEESVNLAKHVGYTNAGTVEFLVDE-NEKHYFMEVNPR 293


>gi|110288964|gb|AAP53321.2| acetyl-coenzyme A carboxylase ACC1A, putative, expressed [Oryza
           sativa Japonica Group]
          Length = 2229

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +IK   GG   GI  +  D  +     Q      G  + I +       L   ++ D
Sbjct: 221 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 280

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +V  +            K        V P++   ++ +     A    + +   G +
Sbjct: 281 KHGNVAALHSRDCSVQRRHQKIIEEGPITVAPSETVKELEQ----AARRLAKCVHYVGAA 336

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+   + + ++LE+N +
Sbjct: 337 TVEYLYSMETGEYYFLELNPR 357


>gi|20279448|gb|AAM18728.1|AC092548_6 putative acetyl-CoA carboxylase [Oryza sativa Japonica Group]
          Length = 2267

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 5/141 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P +IK   GG   GI  +  D  +     Q      G  + I +       L   ++ D
Sbjct: 221 YPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCD 280

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +V  +            K        V P++   ++ +     A    + +   G +
Sbjct: 281 KHGNVAALHSRDCSVQRRHQKIIEEGPITVAPSETVKELEQ----AARRLAKCVHYVGAA 336

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+   + + ++LE+N +
Sbjct: 337 TVEYLYSMETGEYYFLELNPR 357


>gi|331082328|ref|ZP_08331454.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330400814|gb|EGG80415.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 447

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +  +     + A L  +                             
Sbjct: 17  IIRACRELGIRTVAVYSEADKDALHAQLADEAVCIGPASSKDSYLNMERILSATIATKAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   + +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSRFAQMCEKCHVAFIGPSPEIIQKMGNKSEARKTMMQAGVPVIPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P +IK   GG   G+ V +K +    + L +   +        
Sbjct: 137 AVYTVEEGLSEAERIGFPVMIKASSGGGGKGMRVSEKKEDFTENFLMAQQESKNSFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L      V +       ++          P     + I +++ 
Sbjct: 197 MYIERYVRNPRHIEVQILGDKFGNVVQLGERDCSIQRRHQKLIEESPCCAISEKIREKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A QA+G       +FL D  S + F++E+N +
Sbjct: 257 ETARKAAQAVGYESAGTIEFLLDE-SGEFFFMEMNTR 292


>gi|305664129|ref|YP_003860417.1| carbamoyl-phosphate synthase large subunit [Ignisphaera aggregans
           DSM 17230]
 gi|304378698|gb|ADM28537.1| carbamoyl-phosphate synthase large subunit [Ignisphaera aggregans
           DSM 17230]
          Length = 1074

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 40/303 (13%), Positives = 92/303 (30%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++ G +   I+ +                       +  V+   +PD    
Sbjct: 27  SGNQALKAVKEEGIETILINPNIATIMTSYKFADKVYLLPLKPEFIAKVIEIERPDGIMI 86

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V+           +++  T    +  ALS    R   +  +  VP   +
Sbjct: 87  GFGGQTALSLGVKLHDDGILAKYGVKVLGTPIEGIRRALSRSLFRKTMIEHNIPVPPSEA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +     +  P +++        G  +   ++ +   L  + + +   ++LIE+
Sbjct: 147 VTSIDDAIRVAKEMGFPVMVRVSFNLGGAGSFIAWNEEQLYKRLRSAFAQSEIGEVLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+   +     +   + D         +     +                 + Y+  + L
Sbjct: 207 YLHHWKEIEFEVVRDAYDNVAAIACLENLDPMGVHTGESIVVAPCQTLTDYE-YQLSRNL 265

Query: 231 AFLAHQAIGCRGISRSDFLFDP-LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +    +AI   G        +P  S +V+ +E N  P M+  S     +   GY    + 
Sbjct: 266 SIAVGRAIMLIGEGNVQTAQNPWNSDEVYVIETN--PRMSRSS--ALASKATGYPLAYIA 321

Query: 290 LWM 292
             +
Sbjct: 322 AKL 324



 Score = 44.1 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 41/290 (14%), Positives = 92/290 (31%), Gaps = 37/290 (12%)

Query: 2   AVLMG------GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVL 46
            +++G      G+S E + S+ S    A      GF+V  I         D D +  L  
Sbjct: 561 VIILGAGGFRIGVSVEFDWSIMS---FADEARKQGFEVIVINYNPETVSTDWDMNEKLYF 617

Query: 47  AHLKPDLAFNV------------LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
             +  +   +V            L G    +   +     + +  T    +  A +    
Sbjct: 618 DEITVERVLDVYELEKPIGVVAFLGGQISNNIAWELEKRNVVLLGTAGYSVHRAENRALF 677

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                      P   +       +     I  P +I+P    S   + +      +   +
Sbjct: 678 SELLDKLRIKQPPWIAATNINEVIKFAEDIGYPVLIRPSYVLSGSAMKIAWNRNELIEYI 737

Query: 155 LQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             ++  +    +++ +++D  IE     +GD    +  +         +    +      
Sbjct: 738 KLATKISPKYPVVVSKFIDNAIEFEIDAVGDGETAIGTVIEHIEPAGVHSGDATMSIPIR 797

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            LP     DI ++   +A   ++ +  +G     FL+D     ++ +E+N
Sbjct: 798 YLPI----DIVRKAVDVAMKINRVLEIKGPYNLQFLYD--GNDIYVIELN 841


>gi|116254876|ref|YP_770712.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115259524|emb|CAK10662.1| putative biotin carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 461

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ K   +   +  +             Y++       
Sbjct: 160 ALEIGYPVIVKASGGGGGRGMRVVPKADLLHEAIALTREEARKAFGSPSLYMEKFLEHPR 219

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          PA  I  DI + V      A   IG
Sbjct: 220 HIEIQVICDDHGNAVWLGHRDCSMQRRHQKVVEEAPAAGIAPDIIQPVGMACVQACLQIG 279

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+       +++E+N +
Sbjct: 280 YRGVGTFEFLY--EDGAFYFIEMNTR 303


>gi|52840707|ref|YP_094506.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
 gi|52627818|gb|AAU26559.1| acetyl CoA carboxylase, biotin carboxylase subunit [Legionella
           pneumophila subsp. pneumophila str. Philadelphia 1]
          Length = 449

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 98/321 (30%), Gaps = 59/321 (18%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGL------------------------VLAHLKP- 51
                 A ++ G +   +  DVD+ +                          +++  +  
Sbjct: 16  ALRILRACKELGIQTVAVHSDVDKDLLHVRLADETVCIGPAPAQKSYLNIPAIISAAEIT 75

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+     I+E     +      +  L  DK+ +   + + GVP  
Sbjct: 76  DAV--AIHPGYGFLSENADFADIVEQSGFRFIGPRGDSIRLMGDKVSAIAAMKAAGVPCV 133

Query: 109 PS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         +   ++    I  P +IK   GG   G+ V+  + ++   +  + S    
Sbjct: 134 PGSDGPLGDDDNKNLELARKIGYPIIIKAAGGGGGRGMRVVHSESNLLSAIALTRSEAKA 193

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 194 AFNNPIVYMEKFLENPRHVEFQVLGDGKGHAIHLGERDCSMQRRHQKVVEEAPAPGITPE 253

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
           + +E+      A + +  RG    +FLF       +++E+N +              +  
Sbjct: 254 LREEIGASVIKACKELQYRGAGTFEFLF--QDGCFYFIEMNTR----------IQVEHPV 301

Query: 281 ----AGYSFRELLLWMVEDAS 297
                G    +L+   ++ AS
Sbjct: 302 TEMITGI---DLIKEQIKIAS 319


>gi|290973087|ref|XP_002669281.1| predicted protein [Naegleria gruberi]
 gi|284082826|gb|EFC36537.1| predicted protein [Naegleria gruberi]
          Length = 2218

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 72/222 (32%), Gaps = 11/222 (4%)

Query: 45  VLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
            +A + PD             G   +   L +         + +     +    +     
Sbjct: 143 QIAFIGPDSV------PMEALGDKISSTILAQAAGVPCIPWSGSEVHYDITKSGLPIPED 196

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           + +   I      +   + I  P +IK  +GG   GI  +  D  + L   Q  +   G 
Sbjct: 197 IYLKCCITSESEALKCANKIGYPIMIKASEGGGGKGIRKVANDIELKLGFSQVKNEVPGS 256

Query: 165 QLL-IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            +  ++   +   L   V+ D   +   +            K        V P      +
Sbjct: 257 PIFLMKLSSESRHLEVQVVADKHGNALALYSRDCSVQRRHQKIIEEGPVTVAPKH----V 312

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +++  A    +++   G    ++L++P +  V++LE+N +
Sbjct: 313 IDKMEAAAVTLARSVNYSGAGTVEYLYEPATEHVYFLELNPR 354


>gi|240140544|ref|YP_002965024.1| ATP-dependent urea carboxylase [Methylobacterium extorquens AM1]
 gi|240010521|gb|ACS41747.1| ATP-dependent urea carboxylase [Methylobacterium extorquens AM1]
          Length = 1175

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    Q +                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCHSGQELAERFAAVERTARASFGDARVYLERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    D +   +   A    +++ 
Sbjct: 207 HVEVQIFGDGRGRVVALGERDCSLQRRNQKVIEETPAPGLSDAVRARLHAAAVALGESVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP      +LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPDREDFSFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|159043275|ref|YP_001532069.1| carbamoyl-phosphate synthase L chain ATP-binding [Dinoroseobacter
           shibae DFL 12]
 gi|157911035|gb|ABV92468.1| carbamoyl-phosphate synthase L chain ATP-binding [Dinoroseobacter
           shibae DFL 12]
          Length = 681

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 42/276 (15%), Positives = 83/276 (30%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ V   +     +      +G   E+ L    LE   + +      A     DK+ 
Sbjct: 61  IVIDK-VMDAIRQTGAEAVHPG-YGFLSENKLFAEALEKEGVAFIGPPANAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++     V   P  +      D    IS     P +IK   GG   G+ +   D    
Sbjct: 119 SKKIAQEANVSTVPGYMGLIADADEAVKISGEIGYPVMIKASAGGGGKGMRIAWNDAEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L  T             ++  +   
Sbjct: 179 EGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLADTHGNCIYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     +    QA+G       +F+ D   R  ++LE+N +     
Sbjct: 239 VEEAPSPFLDEATRKAMGEQSCALAQAVGYASAGTVEFIVDG-DRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  A+  +
Sbjct: 293 -----LQVEHPVTELITGV---DLVEQMIRVAAGEK 320


>gi|218531929|ref|YP_002422745.1| urea carboxylase [Methylobacterium chloromethanicum CM4]
 gi|218524232|gb|ACK84817.1| urea carboxylase [Methylobacterium chloromethanicum CM4]
          Length = 1176

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    Q +                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCHSAQELAERFAAVERTARASFGDARVYLERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    D +   +   A    +++ 
Sbjct: 207 HVEVQIFGDGRGRVVALGERDCSLQRRNQKVIEETPAPGLSDAVRARLHAAAVALGESVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP      +LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPDREDFSFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|163853124|ref|YP_001641167.1| urea carboxylase [Methylobacterium extorquens PA1]
 gi|163664729|gb|ABY32096.1| urea carboxylase [Methylobacterium extorquens PA1]
          Length = 1176

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 54/183 (29%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    Q +                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCHSAQELAERFAAVERTARASFGDARVYLERFVAQAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA    D +   +   A    +++ 
Sbjct: 207 HVEVQIFGDGRGRVVALGERDCSLQRRNQKVIEETPAPGLSDAVRARLHAAAVALGESVA 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DP      +LE+N       P +T         A  G    +L+ WMV 
Sbjct: 267 YASAGTVEFIYDPDREDFSFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMVR 314

Query: 295 DAS 297
            A+
Sbjct: 315 QAA 317


>gi|145910320|gb|ABP98813.1| chloroplast biotin carboxylase [Gossypium hirsutum]
          Length = 535

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 149 YGFLSENAVFVEMCRDHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQST 208

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   H I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 209 EEAIKLAHEIGFPVMIKATAGGGGRGMRLSKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 268

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +    + D   +V               + +           +  ++ K +  
Sbjct: 269 YIQNPRHIEFQALADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 324

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 325 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 359


>gi|15615188|ref|NP_243491.1| pyruvate carboxylase [Bacillus halodurans C-125]
 gi|10175246|dbj|BAB06344.1| pyruvate carboxylase [Bacillus halodurans C-125]
          Length = 1150

 Score = 49.5 bits (116), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 73/235 (31%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +    +    +  DK++
Sbjct: 67  LDI-EGIIEIAKRHGVDAIHPG-YGFLSENIEFAKRCHEEGIIFIGPELEHLVMFGDKVQ 124

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++      +PV P     +               P++IK   GG   G+ +++ +  + 
Sbjct: 125 AREQAIKANLPVIPGSDGPVSSLEDVKAFADKHGYPFIIKAALGGGGRGMRIVRSENDVQ 184

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L                ++      
Sbjct: 185 ESYERAKSEAKAAFGNDEVYVEKFIENPKHIEVQILADKHGNTLHLYERDCSVQRRHQKV 244

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P+    + + + + + A    + +        +FL D      +++E+N +
Sbjct: 245 VEVAPSVSLSEDVRERICQAAVQLAENVNYVNAGTVEFLVDREGN-FYFIEVNPR 298


>gi|322378740|ref|ZP_08053169.1| biotin carboxylase [Helicobacter suis HS1]
 gi|322380588|ref|ZP_08054740.1| biotin carboxylase [Helicobacter suis HS5]
 gi|321146910|gb|EFX41658.1| biotin carboxylase [Helicobacter suis HS5]
 gi|321148770|gb|EFX43241.1| biotin carboxylase [Helicobacter suis HS1]
          Length = 447

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 46/257 (17%), Positives = 84/257 (32%), Gaps = 13/257 (5%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K  +   GVPV 
Sbjct: 75  FEADAIFPG-YGFLSENQNFVEICSHHGLEFIGPSAQVMALMGDKSKAKTCMQEVGVPVV 133

Query: 109 PSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                   + D        I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 134 EGSEGILKSYDQALEVAKRIGFPIIIKAANGGGGRGMRVVSDPALLKNLYLAAETEALSA 193

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
                 Y++        +    L      V          +          PA     ++
Sbjct: 194 FGDGSVYIEKFIQNPKHIEVQILADKHGNVVHVGERDCSTQRRQQKLIEETPALALKEEV 253

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
            +++   A  A + IG  G    +FL D      +++E+N +  +       EM   +G 
Sbjct: 254 REKLLATAIKAAKHIGYVGAGTFEFLLDANGVDFYFMEMNTR--LQVEHTVSEM--VSGL 309

Query: 284 SFRELLLWMVEDASCLR 300
              +L+ WM++ A   +
Sbjct: 310 ---DLVEWMIKIAQGEK 323


>gi|260575906|ref|ZP_05843901.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodobacter sp.
           SW2]
 gi|259021832|gb|EEW25133.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhodobacter sp.
           SW2]
          Length = 667

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 21/183 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ +   D         S +           +++       
Sbjct: 148 ATKVGYPVMIKASAGGGGKGMRIAWNDAEAREGFQSSKNEAAASFGDDRIFIEKFVTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++  +       P+        K +   A    +A+G
Sbjct: 208 HIEIQVLADSHGNCVYLHERECSIQRRNQKVIEEAPSSFLDPATRKAMGEQACALARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YTSAGTVEFIVDDKRN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMI 313

Query: 294 EDA 296
             A
Sbjct: 314 RVA 316


>gi|260576546|ref|ZP_05844535.1| carbamoyl-phosphate synthase, large subunit [Rhodobacter sp. SW2]
 gi|259021269|gb|EEW24576.1| carbamoyl-phosphate synthase, large subunit [Rhodobacter sp. SW2]
          Length = 1109

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/315 (10%), Positives = 84/315 (26%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDG-------------------LVQAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +                      +A +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTALALADMGVLDKFGVELIGAKRAAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                               M++   +  P +I+P       G  V          +   
Sbjct: 149 IACPKLPSGKYDINAGIAAAMEAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAIVRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+LI++ + G +     +   + D   I     +     +      +      
Sbjct: 209 LEASPMAQVLIDESLLGWKEFEMEVVRDTADNAIIICAIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKVAAKL 339



 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/316 (15%), Positives = 101/316 (31%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   +         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACYALTAAGYETIMVNCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRVEQENGTLHGVIVQFGGQTPLKLAQALANEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCP--SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R + ++ S G+      +             +  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQGLLQSLGLKQPHNGTARSRDEAFAVAADVGYPLVIRPSFVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   +  +   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 DAQLERYIRTAVQVSGDSPVLLDSYLSGAIEVDVDALCDGHAVHVAGIMEHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   +++R      +A+   G+    F        ++ LE+N +
Sbjct: 807 HSGDSACCLPPHSLSPETIADLKRQTVQMARALHVVGLMNVQFAI--KDGVIYVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|254586403|ref|XP_002498769.1| ZYRO0G18128p [Zygosaccharomyces rouxii]
 gi|238941663|emb|CAR29836.1| ZYRO0G18128p [Zygosaccharomyces rouxii]
          Length = 1115

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++A  +   I+ +                       +  ++   +PD    
Sbjct: 50  SGSQAIKALKEAKKQTILINPNIATNQTSHSLADKIYYLPVTPEYISYIIERERPDAILL 109

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G       +LE   I    + I    ++ D+    Q +    VP+  S  
Sbjct: 110 TFGGQTALNCGVALEKMGVLEKYNIKVLGTPIKTLEMTEDRDMFAQALQEINVPIATSFA 169

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                 T+ +   +  P +I+       LG         +    L S S +   Q+L+E+
Sbjct: 170 CETLDETLKAAEEVKYPVIIRSAYALGGLGSGFANNPTELRD--LASQSLSLSPQILVEK 227

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 228 SLKGW-KEVEYEVVRDRVGNCITVCNMENFDPLGIHTGDSIVFAPSQTLSDEEYHMLRTA 286

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 287 AIKIIRHLGVVGECNVQYALQPDGLDFRVIEVNAR--LSRSS--ALASKATGYPLA 338


>gi|86132357|ref|ZP_01050952.1| carbamoyl-phosphate synthase, large subunit [Dokdonia donghaensis
           MED134]
 gi|85817276|gb|EAQ38459.1| carbamoyl-phosphate synthase, large subunit [Dokdonia donghaensis
           MED134]
          Length = 950

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRYGIKILGTSYQALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +         P   +       +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSTLLKNLDIPYPEFDTAETADEALAVAQKLDYPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 DDELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   I ++++        A+   G+    F       KV+ +E N +
Sbjct: 800 ---DSNATLPPFNLGDLILEQIKDHTRKIALALDTVGLINIQFAV--KDDKVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|330975473|gb|EGH75539.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 393

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATSTLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|330895924|gb|EGH28208.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. japonica str. M301072PT]
          Length = 393

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATSTLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|304310711|ref|YP_003810309.1| Putative biotin carboxylase protein [gamma proteobacterium HdN1]
 gi|301796444|emb|CBL44652.1| Putative biotin carboxylase protein [gamma proteobacterium HdN1]
          Length = 674

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 45/252 (17%), Positives = 80/252 (31%), Gaps = 23/252 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A  +  +I +    I A  L   K  SK  + +  VP  P    +    
Sbjct: 89  YGFLSENATFAARCDAEDICFIGPPIGAIELMGSKRESKIAMLAANVPCIPGYEGDHQDE 148

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   G+  + + + I   L ++ S         E  ++ 
Sbjct: 149 SFLLKEAQRICLPLMIKASAGGGGRGMRRVDRTEDIQESLQRARSEAENAFGSGELILER 208

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFL 233
              +   +       T             ++          P+  +  +I + +   A  
Sbjct: 209 AVDSARHVEIQVFGDTHGNYVFLGERDCSMQRRHQKVVEEAPSPAVTPEIRRAMGAAAVK 268

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFREL 288
           A QA    G    +FL D    + ++LE+N       P         EM      +  +L
Sbjct: 269 AAQACKYVGAGTVEFLLD-QKGEFYFLEMNTRLQVEHP-------VTEM-----ITGEDL 315

Query: 289 LLWMVEDASCLR 300
           + W +  A   R
Sbjct: 316 VEWQIRVARGER 327


>gi|94495479|ref|ZP_01302059.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. SKA58]
 gi|94424867|gb|EAT09888.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. SKA58]
          Length = 450

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IK   GG   G+ V     S+   + Q+ S           Y++       
Sbjct: 149 AEKAGYPVIIKAASGGGGRGMKVCTSPDSLETLMQQAGSEAKAAFGDATVYIEKYLGNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P+ +      + +  +   A   +G
Sbjct: 209 HIEIQVFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVLSQAERERIGGVCAKAMADMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTIEFLW--ENGEFYFIEMNTR 292


>gi|85000093|ref|XP_954765.1| carbamoyl phosphate synthase II [Theileria annulata strain Ankara]
 gi|65302911|emb|CAI75289.1| carbamoyl phosphate synthase II, putative [Theileria annulata]
          Length = 1700

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 99/322 (30%), Gaps = 37/322 (11%)

Query: 1    MAVL-MG----GISSEREVSLSSGKACASALEDAGF---------KVSQIDVDRSVGLVL 46
            + VL  G    G S E +    S   C   L   GF         +    D D S  L  
Sbjct: 1140 IIVLGCGPYRIGSSIEFD---WSAVGCIKTLRRLGFFSIIVNCNPETVSTDFDVSDRLYF 1196

Query: 47   AHLKPDLA-------FN-----VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
              L  ++        F       + G    +  ++     L I  T    +      +K 
Sbjct: 1197 EELSLEIVDEIYRFEFPQGIILSVGGQTANNLAIKLDELGLNILGTPVSSIDKCECRNKF 1256

Query: 95   RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +     P               + +  P + +P    S   + VI   + +   L
Sbjct: 1257 GDICDMLGIDQPSWEEFTCVDAAKKFSNKVGFPVLARPSYVLSGASMKVISSHKELESFL 1316

Query: 155  LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              S+  N    ++I ++++       +   A   V       S+       +S   +  +
Sbjct: 1317 QTSAIVNRSHPVVITKFIEN-AKEVEMDCVAKDGVIVN-YAISEHVENAGTHSGDATLII 1374

Query: 215  LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                I +D ++ V+++     + +   G     F+    + K+  +E N    +     F
Sbjct: 1375 PAQNIFVDTHRRVKKITQKLSKYLNITGPFNVQFMC--KNNKIKVIECN----LRASRTF 1428

Query: 275  PEMAAYAGYSFRELLLWMVEDA 296
            P +      +F EL   ++ +A
Sbjct: 1429 PLITNTLNINFIELATRVMVNA 1450



 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/307 (11%), Positives = 85/307 (27%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+++  K+  ++ +                       V  ++   KPD    
Sbjct: 526 SGSQAIKALKESDAKIILVNPNIATVQTSKGMAHVTYFLPITFEYVKQIIEKEKPDGIMC 585

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G  G +         +L         + I     + D+    + ++  G    PS  
Sbjct: 586 AFGGQTGLNVGIELYESGVLRDNNCEILGTSIKTIIDTEDRYLFNKKMTEIGERCAPSKE 645

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+        G      +  +   + +    N     L + 
Sbjct: 646 CTSVNECVMVAKNLGYPVLIRGNFELGGFGSGFANNEAELLEIVNRLFHSNRCKTSLKDT 705

Query: 171 YVDGIE-----LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            V   +                +   +     + +     ++  +        +      
Sbjct: 706 CVHIDKSLKGWKEIEFEVLRDNNDNCVCAASMENFDPLGVHTGDSIVVAPAQTLSASECS 765

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
            ++++AF   + +   G     F  +P   + F +E+N +  ++  S     +   GY  
Sbjct: 766 HLRQVAFNVVRHLDLVGECNIQFAVNPYKFEYFIVELNAR--LSRSS--ALASKATGYPL 821

Query: 286 RELLLWM 292
             +   +
Sbjct: 822 AYMAAKI 828


>gi|71026847|ref|XP_763067.1| glutamine-dependent carbamoyl phosphate synthase [Theileria parva
            strain Muguga]
 gi|68350020|gb|EAN30784.1| glutamine-dependent carbamoyl phosphate synthase, putative [Theileria
            parva]
          Length = 1680

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 47/322 (14%), Positives = 96/322 (29%), Gaps = 37/322 (11%)

Query: 1    MAVL-MG----GISSEREVSLSSGKACASALEDAGF-------KVSQIDVDRSVGLVLAH 48
            + VL  G    G S E +    S   C   L   GF           +  D  V   L  
Sbjct: 1120 IIVLGCGPYRIGSSIEFD---WSAVGCIKTLRRLGFFSIIVNCNPETVSTDFDVSDRLYF 1176

Query: 49   LK--------------PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
             +              P      + G    +  ++     L I  T    +      +K 
Sbjct: 1177 EELSLEIVDEIYRFECPQGIILSVGGQTANNLAIKLGELGLNILGTPVSSIDKCECRNKF 1236

Query: 95   RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +     P               + +  P + +P    S   + VI   + +   L
Sbjct: 1237 SDICDMLGIDQPSWEEFTCVDAAKKFSNKVGFPVLARPSYVLSGASMKVISSHKELESFL 1296

Query: 155  LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              S+  N    ++I ++++       +   +   V       S+       +S   +  +
Sbjct: 1297 QTSAIVNRSHPVVITKFIEN-AKEVEMDCVSKDGVIVN-YAISEHVENAGTHSGDATLII 1354

Query: 215  LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                I +D ++ V+++     + +   G     F+    + K+  +E N    +     F
Sbjct: 1355 PAQNIHVDTHRRVKKITQKLSKYLNITGPFNVQFMC--KNNKIKVIECN----LRASRTF 1408

Query: 275  PEMAAYAGYSFRELLLWMVEDA 296
            P +      +F EL   ++ +A
Sbjct: 1409 PLITNTLNINFIELATRVMVNA 1430



 Score = 44.1 bits (102), Expect = 0.023,   Method: Composition-based stats.
 Identities = 38/314 (12%), Positives = 86/314 (27%), Gaps = 43/314 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+++  K+  ++ +                       V  ++   KPD    
Sbjct: 520 SGSQAIKALKESDAKIILVNPNIATVQTSKGMAHVTYFLPITFEYVKQIIEKEKPDGIMC 579

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G  G +  ++      L         + I     + D+    + ++  G    PS  
Sbjct: 580 AFGGQTGLNVGIELYQKNVLIDNNCEILGTSIKTIIDTEDRYLFNKKMTEIGERCAPSKE 639

Query: 113 V--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+        G      +  +   + +    N G   L   
Sbjct: 640 CTSIEECVTVAKDLGYPVLIRGNFELGGFGSGFANNESELLEIVTRLFHSNRGKTSLKVL 699

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI------- 223
                +    +                D     +  +S+ +   L       I       
Sbjct: 700 LNIFTDTCVHIDKSLKGWKEIEFEVLRDNNDNCVCAASMENFDPLGVHTGDSIVVAPAQT 759

Query: 224 -----YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
                   ++++AF   + +   G     F  +P   + F +E+N +  ++  S     +
Sbjct: 760 LSASECSHLRQVAFNVVRHLDLVGECNIQFAVNPFKFEYFIVELNAR--LSRSS--ALAS 815

Query: 279 AYAGYSFRELLLWM 292
              GY    +   +
Sbjct: 816 KATGYPLAYMAAKI 829


>gi|86450079|gb|ABC96228.1| carbamoylphosphate synthetase [Hilarigona sp. JKM-2006]
          Length = 1294

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G D     +     +    + I +   + D+    + V+  G    PS  
Sbjct: 427 TFGGQTALNCGVDLDRAGVFAKYNVQIMGTPIQSIIETEDRKIFAERVAEIGEKGAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 487 VFSVAEALDAAETLGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|86450135|gb|ABC96256.1| carbamoylphosphate synthetase [Meghyperus occidens]
          Length = 1299

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V      V    +
Sbjct: 428 TFGGQTALNCGVELDKAGIFAKYNVDILGTPIQSIIETEDRKIFAERVGEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG         +   LL   +  H +QL+I++
Sbjct: 488 VYSVAEALEAAERLGYPVMARAAFSLGGLGSGFANNTTELT--LLAHQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S   + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVVGECNIQYALNPESEVYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|301165503|emb|CBW25074.1| biotin carboxylase [Bacteriovorax marinus SJ]
          Length = 447

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/217 (11%), Positives = 70/217 (32%), Gaps = 8/217 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+     +     + +    +       DK+ SK++  + GVP+   I  
Sbjct: 78  AIHPGFGFLSENKEFAQMCAKWGVEFIGPNVECIEKMGDKIISKEIAEAAGVPILKPIAV 137

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               ++  +     +  P ++K   GG   G+  I+    + + + +  +          
Sbjct: 138 NGREDKDILADVEEMGLPVLVKASAGGGGRGMKKIEDISDLLVTITRLKTEAKAGFGDDT 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +++        +    +      V         ++          P  +  +  +    
Sbjct: 198 LFIEKFVTNPRHVEVQIMADRHGNVLHLGERDCTVQRRFQKVVEESPCPVLSEEKRAEIC 257

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +     + +    +   ++L+D    K +++E+N +
Sbjct: 258 ESAVALAKHVNYDSVGTVEYLYDQDEDKFYFMEMNTR 294


>gi|229019149|ref|ZP_04175983.1| Pyruvate carboxylase [Bacillus cereus AH1273]
 gi|229025392|ref|ZP_04181810.1| Pyruvate carboxylase [Bacillus cereus AH1272]
 gi|228735977|gb|EEL86554.1| Pyruvate carboxylase [Bacillus cereus AH1272]
 gi|228742165|gb|EEL92331.1| Pyruvate carboxylase [Bacillus cereus AH1273]
          Length = 1148

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 29/244 (11%), Positives = 78/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E  EI +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEEIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +PV P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPVIPGSDGPVNSLEEVAEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     + + +  + +       +   ++ D   +V  +         
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLFERDCSVQ- 238

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +  D+ + +   A    + +        +FL      + +++E
Sbjct: 239 ---RRHQKVVEIAPSVSLSDDLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIE 293

Query: 262 INVQ 265
           +N +
Sbjct: 294 VNPR 297


>gi|268529976|ref|XP_002630114.1| C. briggsae CBR-PYR-1 protein [Caenorhabditis briggsae]
          Length = 2198

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +P     
Sbjct: 412 SGAQALKALREEGIRTVLINPNIATVQTSKGFADFTYFLPITKEYVTDVIKKERPTGILC 471

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G        D     I E  ++    + I     + D+     +       V    +
Sbjct: 472 GFGGQTALNCAIDLYKDGIFEQYDVQVLGTQITTIMKTEDRDLFNQEISAVGEKVAPSKA 531

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P +++       LG       + +     Q+    H +Q+L+++
Sbjct: 532 ATTMEGAIEAAEELGYPVLVRAAYALGGLGSGFADNREELIAIAQQAL--AHSNQVLVDK 589

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 590 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESVVVAPSQTLSDKEYNALRTC 648

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  DP S   + +E+N +  ++  S     +   GY    +  
Sbjct: 649 AIKVIRHLGIIGECNIQYALDPNSLTYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 704

Query: 291 WM 292
            +
Sbjct: 705 KL 706


>gi|332532757|ref|ZP_08408631.1| biotin carboxylase of acetyl-CoA carboxylase [Pseudoalteromonas
           haloplanktis ANT/505]
 gi|332037784|gb|EGI74234.1| biotin carboxylase of acetyl-CoA carboxylase [Pseudoalteromonas
           haloplanktis ANT/505]
          Length = 446

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 81/283 (28%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP------------------- 51
                 A ++ G K   +    DR +  VL         +P                   
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGRPSATESYLDIPRIIAAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+      +E     +         L  DK+ +   +   GVP  
Sbjct: 74  DAV--AIHPGYGFLAENADFADQVEQSGFVFIGPKGDTIRLMGDKVSAISAMRKAGVPCV 131

Query: 109 PSILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P             M     I  P +IK   GG   G+ V++ +  +   +  +      
Sbjct: 132 PGSDGPVSDDKERNMQIAKRIGYPVIIKAAGGGGGRGMRVVRSESELIDSIALTQQEAKQ 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 FFGNSMVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 TRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|323702767|ref|ZP_08114427.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           nigrificans DSM 574]
 gi|323532284|gb|EGB22163.1| acetyl-CoA carboxylase, biotin carboxylase [Desulfotomaculum
           nigrificans DSM 574]
          Length = 449

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   ++ +   +  + +         + Y++       
Sbjct: 148 AQEIGYPVLIKASAGGGGRGMRVAHSEEDLLKAINTAQAEAQAAFGNGDVYLEKYVEQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L   E  +         ++  +       P+      + +++  +A  A +A+G
Sbjct: 208 HIEFQILGDKEGNIVYLGERDCSIQRRNQKVIEEAPSTALTPSLRRKMGEMAVKAAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    K +++E+N +
Sbjct: 268 YYNAGTVEFLLDKH-NKFYFIEMNTR 292


>gi|300313399|ref|YP_003777491.1| acyl-CoA carboxylase biotin subunit [Herbaspirillum seropedicae
           SmR1]
 gi|300076184|gb|ADJ65583.1| acyl-CoA carboxylase biotin subunit protein [Herbaspirillum
           seropedicae SmR1]
          Length = 462

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 47/146 (32%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI + +    +  +   + +           Y++      
Sbjct: 150 CADEIGYPLLIKASAGGGGRGIRMARDATELAREFPLAQAEAQAAFGSAAVYLERFIRRA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +             +     + +   A    + + 
Sbjct: 210 RHIEVQILGDGERAVHLFERECSLQRRRQKVLEEAPSPALTPAQRQALCDSAVRLAERLH 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    ++LFD  S + F++E+N +
Sbjct: 270 YRGAGTLEYLFDDESGEFFFIEMNTR 295


>gi|238026175|ref|YP_002910406.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           glumae BGR1]
 gi|237875369|gb|ACR27702.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia glumae
           BGR1]
          Length = 455

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRLMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDDPKEIVKIARAIGYPVIIKASGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
              + Y++        +    L                ++          PA  I   + 
Sbjct: 194 GNPQVYMEKYLENPRHIEIQVLADAHKNALWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|119509012|ref|ZP_01628163.1| acetyl-CoA carboxylase [Nodularia spumigena CCY9414]
 gi|119466178|gb|EAW47064.1| acetyl-CoA carboxylase [Nodularia spumigena CCY9414]
          Length = 447

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/259 (15%), Positives = 81/259 (31%), Gaps = 30/259 (11%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I     I +      A  L  DK  +K+ +    VP  P    
Sbjct: 78  AIHPGYGFLSENARFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKALVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQL 166
            +   +  +     +  P +IK   GG   G+ +++ +     + L     +    G+  
Sbjct: 138 LVESEQEGLLIAKDMDYPVMIKATAGGGGRGMRLVRSESEFVKLFLAAQGEAGAAFGNSG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +              A        +   +      + +           +  ++  +
Sbjct: 198 VYVEKFIERPRHIEFQILADNYG--NVIHLGERDCSIQRRNQKLLEEAPSPALDPELRDK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
           + + A  A Q I   G    +FL D +S K +++E+N       P         EM    
Sbjct: 256 MGQAAVRAAQFINFTGAGTVEFLLD-MSGKFYFMEMNTRIQVEHP-------VTEM--VT 305

Query: 282 GYSFRELLLWMVEDASCLR 300
           G    +L+   +  A   R
Sbjct: 306 GI---DLVAEQIRIAQGER 321


>gi|33772564|gb|AAQ54681.1| carbamoylphosphate synthetase [Mythicomyia sp. NCSU-0300011]
          Length = 475

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 134 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 193

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     +    +  V    +
Sbjct: 194 TFGGQTALNCGVELEKAGIFEKYNVKILGTPIESIIETEDRKLFAERVAEINEKVAPSEA 253

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   +  P + +       LG         +    L   +  + +QL+I++
Sbjct: 254 VYSVQEALSAAERLGYPVMARAAFSLGGLGSGFANNADELSA--LAQQALAYSNQLIIDK 311

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 312 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRST 370

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 371 AIKVIRHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 426

Query: 291 WM 292
            +
Sbjct: 427 KL 428


>gi|115350560|ref|YP_772399.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ambifaria AMMD]
 gi|170699983|ref|ZP_02891010.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           IOP40-10]
 gi|172059591|ref|YP_001807243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           ambifaria MC40-6]
 gi|115280548|gb|ABI86065.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           AMMD]
 gi|170135131|gb|EDT03432.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           IOP40-10]
 gi|171992108|gb|ACB63027.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MC40-6]
          Length = 455

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +         +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +  +     I  P +IK   GG   G+ V+  + ++   +  +           + Y++
Sbjct: 142 PKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNPQVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP  + + +     
Sbjct: 202 KFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + +G  G    +FL+   + + +++E+N +
Sbjct: 262 DACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|307566892|gb|ADN52612.1| acetyl-CoA carboxylase BC subunit [Jatropha curcas]
          Length = 536

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQNT 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   H I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 213 EEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 272

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 273 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 329 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|229662029|gb|ACQ84447.1| vancomycin resistance protein B [Enterococcus faecalis]
          Length = 160

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 31/108 (28%), Positives = 54/108 (50%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              + D+AF VLHG  GEDG +Q +  L  IPY    I +SA+ MDK  +  +  + G+ 
Sbjct: 33  ETRRIDVAFPVLHGKCGEDGAIQGLFVLSGIPYVGCDIQSSAVCMDKSLAYILTKNAGIA 92

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           V    ++++        ++ P  +KP + GSS G+  +   + +   +
Sbjct: 93  VPEFQMIDKGDKPEAGALTYPVFVKPARLGSSFGVTKVNGTEELNAAI 140


>gi|207347553|gb|EDZ73685.1| YBR208Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 873

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 10/66 (15%), Positives = 25/66 (37%), Gaps = 19/66 (28%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLW 291
           +  +     +F++D    + ++LE+N +              +       G    +L+ W
Sbjct: 33  LNYKCAGTVEFIYDEKKDEFYFLEVNTR----------LQVEHPITEMVTGL---DLVEW 79

Query: 292 MVEDAS 297
           M+  A+
Sbjct: 80  MIRIAA 85


>gi|134294691|ref|YP_001118426.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           vietnamiensis G4]
 gi|134137848|gb|ABO53591.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           vietnamiensis G4]
          Length = 455

 Score = 49.5 bits (116), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 69/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRLMGDKVTAKQTMIKTGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 137 ALPDDPKEIVKIARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L                ++          P   IP  +   +
Sbjct: 197 QVYMEKFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIDRI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 257 GDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|289550702|ref|YP_003471606.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           lugdunensis HKU09-01]
 gi|289180234|gb|ADC87479.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           lugdunensis HKU09-01]
          Length = 451

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                 + I  P +IK   GG   GI V + DQ +      +             Y++  
Sbjct: 142 DAKQIANHIGYPVIIKATAGGGGKGIRVARNDQELEKGYKMTQQEAETAFGNGGLYLEKF 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
                 +    +      V         ++          P+ I  +  +E     A  A
Sbjct: 202 IENFRHIEIQIIGDQFGHVVHLGERDCTIQRRMQKLVEESPSPILTEAKREEMGAAAVRA 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            QA+        +F++D    + +++E+N +
Sbjct: 262 AQAVNYENAGTVEFIYDLDDDQFYFMEMNTR 292


>gi|254572936|ref|XP_002493577.1| Urea amidolyase, contains both urea carboxylase and allophanate
           hydrolase activities [Pichia pastoris GS115]
 gi|238033376|emb|CAY71398.1| Urea amidolyase, contains both urea carboxylase and allophanate
           hydrolase activities [Pichia pastoris GS115]
 gi|328354595|emb|CCA40992.1| urea carboxylase [Pichia pastoris CBS 7435]
          Length = 1832

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 16/144 (11%), Positives = 42/144 (29%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  +  I                    +++       
Sbjct: 772 AAKLEYPVMVKSTAGGGGIGLQKVDSEADIERVFETVQHQGKSYFGDSGVFLERFVENAR 831

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     L+  +       PA    +    ++++ A     A+ 
Sbjct: 832 HVEIQMFGDGYGKAIALGERDCSLQRRNQKIIEETPAPNLPEATRLKMRKAAEQLGSAMN 891

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
            +     +F++D      ++LE+N
Sbjct: 892 YKCAGTVEFIYDEKRDAFYFLEVN 915


>gi|319787725|ref|YP_004147200.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317466237|gb|ADV27969.1| phosphoribosylglycinamide formyltransferase 2 [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 395

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 73/268 (27%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V   D                       ++  ++A  KPDL    +
Sbjct: 24  GKEVAIELQRLGAEVIAADRYADAPAMQVAHRSHVLDMLDTFALRELIAKEKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +        ++  T      +       R               +       
Sbjct: 84  EAIHTETLVQLETEHGQKVVPTARAARLTMDREGIRRLAAETLGLPTSPYRFVDTLEEYR 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++  ++  P V+KP+   S  G   ++++  +        +   G        V+G    
Sbjct: 144 EAIAVVGLPCVVKPVMSSSGKGQSTVREESQVEAA--WEYAQTGGRAGAGRCIVEG--FI 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V              L+          P  +     +  + +A      +
Sbjct: 200 DFDYEITLLTVRHAGGTDFCEPVGHLQRDGDYRESWQPQPMSPRALERAREIARTITDDL 259

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +        +V++ E++ +P
Sbjct: 260 GGWGVFGVELFV--KGDEVWFSEVSPRP 285


>gi|169628284|ref|YP_001701933.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           abscessus ATCC 19977]
 gi|254788773|sp|B1MKI7|PURT_MYCA9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|169240251|emb|CAM61279.1| Probable phosphoribosylglycinamide formyltransferase 2 (PurT)
           [Mycobacterium abscessus]
          Length = 402

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/284 (9%), Positives = 75/284 (26%), Gaps = 29/284 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+    AL+  G +   +D                        +  ++   KPDL    +
Sbjct: 24  GREVLIALQRLGVETIAVDRYENAPGHQIAHHARVISMTDPEQLRALIEAEKPDLVVPEI 83

Query: 59  H----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
                           +  +         +    +      +  + +S          + 
Sbjct: 84  EAIATATLEALETEGVVRVIPTARAARLTMDREGIRRLAAETLGLPTSPYQFCGSLDELQ 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVD 173
                    +  P V+KPL   S  G   +     +      + + +   +  +I +   
Sbjct: 144 AAIDPESGGVGYPCVVKPLMSSSGKGQSKLDGPADVEKAWDYAMAGSRVTNNRVIVEGFV 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             +    ++   +L                 + +        P  +     +  Q +A  
Sbjct: 204 DFDYEITLLTVRALGDDGEVETSFCAPIGHRQANGDYVESWQPHPMTEAALRSAQHIARS 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             + +G +GI   +        +V++ E++ +P      +   +
Sbjct: 264 VTENLGGQGIFGVELFI--KGDQVYFSEVSPRP--HDTGMVTMI 303


>gi|56695998|ref|YP_166352.1| propionyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi DSS-3]
 gi|304445935|pdb|3N6R|A Chain A, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445937|pdb|3N6R|C Chain C, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445939|pdb|3N6R|E Chain E, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445941|pdb|3N6R|G Chain G, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445943|pdb|3N6R|I Chain I, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|304445945|pdb|3N6R|K Chain K, Crystal Structure Of The Holoenzyme Of Propionyl-Coa
           Carboxylase (Pcc)
 gi|56677735|gb|AAV94401.1| propionyl-CoA carboxylase, alpha subunit [Ruegeria pomeroyi DSS-3]
          Length = 681

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 21/183 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   DQ        S +           +++        
Sbjct: 149 NQIGYPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L  +             ++  +       P+    +  +      A    +A+G 
Sbjct: 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGQKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|329295750|ref|ZP_08253086.1| acetyl-CoA carboxylase biotin carboxylase subunit [Plautia stali
           symbiont]
          Length = 449

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINTMKKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SHGSLTDDMEKNCAIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L   +            ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGERCSNACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|237800079|ref|ZP_04588540.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|237806408|ref|ZP_04593112.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331022934|gb|EGI02991.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. oryzae str. 1_6]
 gi|331027521|gb|EGI07576.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. oryzae str. 1_6]
          Length = 393

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 79/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                           ++   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSNAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  +            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHVGGTTFCAPVGHRQEKGDYQESWQPQVMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|171318513|ref|ZP_02907665.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MEX-5]
 gi|171096299|gb|EDT41205.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia ambifaria
           MEX-5]
          Length = 455

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/213 (15%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +         +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPGSEGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +  +     I  P +IK   GG   G+ V+  + ++   +  +           + Y++
Sbjct: 142 PKEIVKIARTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNPQVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP  + + +     
Sbjct: 202 KFLENPRHIEIQVLSDAHKNAIWLGERDCSMQRRHQKVIEEAPAPGIPRRLIERIGDRCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + +G  G    +FL+   + + +++E+N +
Sbjct: 262 DACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|283852371|ref|ZP_06369641.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio sp.
           FW1012B]
 gi|283572219|gb|EFC20209.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio sp.
           FW1012B]
          Length = 1231

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 28/248 (11%), Positives = 74/248 (29%), Gaps = 15/248 (6%)

Query: 31  FKVSQIDVDR----SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELL------EIPYT 80
            ++  +  D      +  ++   K       +H  +G                   I  +
Sbjct: 60  HELITLGADSRAYLDIDGIIKKAKAHGVV-AIHPGWGFASEDAEFPRKCAEAGIIFIGSS 118

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
              + +    +D  R    +    VP     +           I  P ++K   GG   G
Sbjct: 119 AEAMQSLGNKVDVRRLAMGLGIPVVPGSEGSVTIPEARAIAAKIGFPIMLKAEGGGGGRG 178

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I  I  +  +     ++S+           +V+ +  +   +           V   D  
Sbjct: 179 IYEIYSEAQLESAFSKASAMAQASFGNPRLFVEKLLTSVRHIEIQVAADMHGNVFAFDER 238

Query: 201 SYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
              ++ +      + P+       ++ + ++  +    +  G   ++  +FL D    + 
Sbjct: 239 DCSVQRNHQKLVEITPSPWRGMTDELRQRLKDYSERLVRETGYYSLATVEFLVDA-DGEP 297

Query: 258 FWLEINVQ 265
           + +E+N +
Sbjct: 298 YLIEVNTR 305


>gi|218526214|gb|ACK86514.1| carbamoyl-phosphate synthase [Nallachius sp. SLW-2008]
          Length = 725

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       +  V+   +P     
Sbjct: 127 SGSQAIKALREDGIQTILINPNIATVQTSKGLADKVYYLPLLPEYIEQVIKSERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G       + +        + I +   + D+    + +   +  V    +
Sbjct: 187 TFGGQTALNCGVQLEKANVFKKYGCRILGTPIESIIETEDRKMFAEKISEINERVAPSEA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG         +    L + +  H  Q++I++
Sbjct: 247 VYSIEEALNAADKIGYPVMTRAAFSLGGLGSGFANNSDELRS--LAAQALAHSSQVIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRST 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 364 AIKVIRHFGIVGECNIQYALNPHSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|145222627|ref|YP_001133305.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium gilvum
           PYR-GCK]
 gi|254788774|sp|A4T9D5|PURT_MYCGI RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|145215113|gb|ABP44517.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Mycobacterium gilvum PYR-GCK]
          Length = 400

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 84/278 (30%), Gaps = 33/278 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+    AL+  G +   +D                        +  ++   +PDL    +
Sbjct: 24  GREVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMTDPEQLRALIEAERPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                        LE   +        A+ L+MD+   +++ +                 
Sbjct: 84  E---AIATPALEALEAEGVVTVIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLE 140

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVD 173
           + +  I      P V+KP+   S  G   I   + +      + S +   +  +I +   
Sbjct: 141 ELRAAIDGTVGYPCVVKPVMSSSGKGQSKIDGPEDVAPAWEYAMSGSRVSNTRIIVEGFV 200

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
             +    ++   +   +     +        + S        P  +P       +++A  
Sbjct: 201 DFDYEITLLTVRARGASGEVQTQFCEPIGHRQVSGDYVESWQPHPMPSTALDRSRQIAKA 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             + +G +GI   +         V++ E++ +P   GM
Sbjct: 261 VTENLGGQGIFGVELFV--KGDDVWFSEVSPRPHDTGM 296


>gi|91975936|ref|YP_568595.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas
           palustris BisB5]
 gi|91682392|gb|ABE38694.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas
           palustris BisB5]
          Length = 1109

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL+  G+++  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKALKQEGYRIVLVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERYAIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLETFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          +      +   +
Sbjct: 149 PSSRQVKNLPDALRALDEIGFPALIRPSFTMGGTGGGIAYTKAEFIEIVESGIDASPTSE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKKDNCIIVCSIENLDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPDDGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 41.8 bits (96), Expect = 0.12,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +   +  E++R        +   G+    +       +++ LE+N +   T  
Sbjct: 830 CSLPPHSLDAAMIAELERQTRELALGLDVVGLMNVQYAI--KDGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    +L   +
Sbjct: 886 --VPFVAKVIGMPVAKLAARI 904


>gi|315658198|ref|ZP_07911070.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
 gi|315496527|gb|EFU84850.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus
           lugdunensis M23590]
          Length = 452

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/151 (15%), Positives = 48/151 (31%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                 + I  P +IK   GG   GI V + DQ +      +             Y++  
Sbjct: 143 DAKQIANHIGYPVIIKATAGGGGKGIRVARNDQELEKGYKMTQQEAETAFGNGGLYLEKF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
                 +    +      V         ++          P+ I  +  +E     A  A
Sbjct: 203 IENFRHIEIQIIGDQFGHVVHLGERDCTIQRRMQKLVEESPSPILTEAKREEMGAAAVRA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            QA+        +F++D    + +++E+N +
Sbjct: 263 AQAVNYENAGTVEFIYDLDDDQFYFMEMNTR 293


>gi|313889229|ref|ZP_07822883.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
 gi|312844783|gb|EFR32190.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptoniphilus harei ACS-146-V-Sch2b]
          Length = 459

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 17/145 (11%), Positives = 48/145 (33%), Gaps = 1/145 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  +   +++   +  S +           +++       
Sbjct: 148 CDKIGYPIILKARSGGGGKGMRRVDSPENLFHYIDLSKAEAKASFGDERIFIEKFIENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L     ++   +      + +           I  ++ +++ + +    +A G 
Sbjct: 208 HIEVQVLSDGNKSLHLYERECSLQRNNQKILEEAPCNFISYELKEKLYKASLDCVRATGY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +FL D      ++ E+N +
Sbjct: 268 LGAGTVEFLVD-KDENFYFCEMNTR 291


>gi|325678689|ref|ZP_08158299.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ruminococcus
           albus 8]
 gi|324109739|gb|EGC03945.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Ruminococcus
           albus 8]
          Length = 456

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 40/281 (14%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G K   +        + A L  +                             
Sbjct: 17  VIRACRELGIKTVAVYSTADKNALHAMLADEAVCIGGPQSKDSYLNVRAIISACEITGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +      +  +  DK ++K+ +   GVPV      
Sbjct: 77  AIHPGFGFLSENPAFARMCEKCGIVFIGPRATSIEMLGDKAQAKETMKENGVPVIMGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            I            +  P ++K   GG   GI +++ ++ +   +  +       + + +
Sbjct: 137 AISNIHAAKTLARDLGYPVLVKASAGGGGRGIRIVESEEELEPMMKAARQEALACFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +   D   +   ++ D   DV  +            K      +      +  ++ 
Sbjct: 197 VYIEKFIKDPKHIEIQILADDYGDVIYLGERDCSMQRRRQKVLEEAPSPAS--FMTEELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ R A  A +  G R     +FL D  +   +++E+N +
Sbjct: 255 AKMGRAAVTAARVCGYRNAGTIEFLVD-SNGDFYFMEMNTR 294


>gi|167837953|ref|ZP_02464812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis MSMB43]
          Length = 455

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SDGALPDDPKEIVKIARSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|221067806|ref|ZP_03543911.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
 gi|220712829|gb|EED68197.1| Carbamoyl-phosphate synthase L chain ATP-binding [Comamonas
           testosteroni KF-1]
          Length = 657

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P ++K + GG   G+ +++  Q +   L  + S         +  V+   +   
Sbjct: 147 AAMIGYPVMVKAVAGGGGRGMRLVESAQQLHAALNSARSEALAGFGNGDLLVERAVMHPR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           V         ++          P+     +  + +   A    +A G
Sbjct: 207 HVEVQVFADGHGHVIHLGERDCSVQRRHQKIIEEAPSPAVNAEQREHMGNCAVALAKAAG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL     R+ + +E+N +
Sbjct: 267 YVGAGTVEFLV--EGRQFYLMEMNTR 290


>gi|157803516|ref|YP_001492065.1| acylglycerophosphoethanolamine acyltransferase [Rickettsia
           canadensis str. McKiel]
 gi|157784779|gb|ABV73280.1| acylglycerophosphoethanolamine acyltransferase [Rickettsia
           canadensis str. McKiel]
          Length = 665

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 92/294 (31%), Gaps = 46/294 (15%)

Query: 15  SLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL 74
           S  S K   SA+ ++G   S +              P+ A N+L      +G+V      
Sbjct: 63  SYLSIKNIISAIRESG--ASAVHPGYGFL----SENPNFA-NIL----KREGVVLIGPSA 111

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
             I      I A  ++++   S        +      +           I  P ++K   
Sbjct: 112 TTIKKMGDKIEAKKIAIEAGVSTVPGYMGTIKDVKQAVD------IAKEIGFPIIVKAAA 165

Query: 135 GGSSLGIIVIKKDQSIPLD-----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDV 189
           GG   G+ V+     +        L  ++S++     + +       +   ++ D   + 
Sbjct: 166 GGGGRGMRVVNNPAEMANAFESAKLEAANSFSDDRLFIEKLIQTPRHIEIQLLADQYGNS 225

Query: 190 TEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
             +   +        ++          + I  D+ +E+ +      Q +G       +F+
Sbjct: 226 VCLGERECSIQ----RHHQKVIEEAPSSFITEDVRQEMYKQVISLSQKVGYYSAGTVEFI 281

Query: 250 FDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
            D      ++LE+N +              +       G    +++  M++ A+
Sbjct: 282 VDSNKN-FYFLEMNTR----------LQVEHPVTELITGI---DIVEEMIKIAA 321


>gi|84686286|ref|ZP_01014181.1| propionyl-CoA carboxylase, alpha subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665813|gb|EAQ12288.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2654]
          Length = 681

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/272 (13%), Positives = 78/272 (28%), Gaps = 27/272 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ V   +     +      +G   E+      LE   + +      A     DK+ 
Sbjct: 61  IVIDK-VMDAIKQSGAEAVHPG-YGFLSENAKFAEALEAAGVAFIGPPKGAIEAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++     V   P  +      +      + I  P +IK   GG   G+ +   D    
Sbjct: 119 SKKIAQDANVSTVPGYMGLIEDAEEAVKISNEIGYPVMIKASAGGGGKGMRIAWNDTEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 179 EGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQVLCDAHGNGIYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+ D      ++LE+N +     
Sbjct: 239 VEEAPSPFLDEETRKAMGEQAVALAKAVGYASAGTVEFIVDGEKN-FYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDA 296
                    +       G    +L+  M+  A
Sbjct: 293 -----LQVEHPVTELITGV---DLVEQMIRVA 316


>gi|324991694|gb|EGC23626.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK353]
          Length = 455

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGDAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|307308817|ref|ZP_07588505.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
 gi|306900622|gb|EFN31234.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti BL225C]
          Length = 670

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 26/271 (9%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +               I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              S +           +++        +    L      +         ++  +     
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQKVIE 243

Query: 214 VLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             P+    +  +      A    +A+G       +F+ D   R  ++LE+N +       
Sbjct: 244 EAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNTR------- 295

Query: 273 IFPEMAAY------AGYSFRELLLWMVEDAS 297
                  +       G    +L+  M+  A+
Sbjct: 296 ---LQVEHPVTELVTGL---DLVEQMIRVAA 320


>gi|307320354|ref|ZP_07599772.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
 gi|306894076|gb|EFN24844.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           meliloti AK83]
          Length = 670

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 26/271 (9%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +               I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              S +           +++        +    L      +         ++  +     
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQKVIE 243

Query: 214 VLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             P+    +  +      A    +A+G       +F+ D   R  ++LE+N +       
Sbjct: 244 EAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNTR------- 295

Query: 273 IFPEMAAY------AGYSFRELLLWMVEDAS 297
                  +       G    +L+  M+  A+
Sbjct: 296 ---LQVEHPVTELVTGL---DLVEQMIRVAA 320


>gi|299537756|ref|ZP_07051045.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
 gi|298726735|gb|EFI67321.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           fusiformis ZC1]
          Length = 455

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI V + ++ +   +  +             Y++      
Sbjct: 145 WAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIEITQKEAAAAFGNPGVYLEKFIEYF 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
                  L      V         ++          P+     +   E+   A  A QA 
Sbjct: 205 RHCEIQVLADGYGNVVHLGERDCTVQRRMQKLVEEAPSPALSSERRAEMGAAAVKAAQAC 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F++D    K +++E+N +
Sbjct: 265 NYEGAGTIEFIYDYQEDKFYFMEMNTR 291


>gi|149181705|ref|ZP_01860197.1| pyruvate carboxylase [Bacillus sp. SG-1]
 gi|148850553|gb|EDL64711.1| pyruvate carboxylase [Bacillus sp. SG-1]
          Length = 1146

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 25/239 (10%), Positives = 73/239 (30%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 64  LDI-EGIIEIAKKADVDAIHPG-YGFLSENINFARRCEEEGITFIGPHSGHLDMFGDKVK 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     +      +        P +IK   GG   G+ +++    + 
Sbjct: 122 ARHQAQLANIPVIPGSDGPVSGLDEVVQFGKTHGYPIIIKASLGGGGRGMRIVRGPDQVK 181

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  +     +   +   ++GD   ++  +            + 
Sbjct: 182 ESYERAKSEAKAAFGNDEVYVERFVENPKHIEVQILGDQQGNIIHLFERDCSVQ----RR 237

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +   +  ++   A    + +        +FL      + +++E+N +
Sbjct: 238 HQKVVEVAPCVSLDEKLRDDICNAAVQLMKNVDYVNAGTVEFLV--ADNRFYFIEVNPR 294


>gi|111019238|ref|YP_702210.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus jostii
           RHA1]
 gi|122955866|sp|Q0SEI4|PURT_RHOSR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|110818768|gb|ABG94052.1| phosphoribosylglycinamide formyltransferase 2 [Rhodococcus jostii
           RHA1]
          Length = 403

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 69/274 (25%), Gaps = 33/274 (12%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D S    L       +P      +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYDNAPGHQVAHRAHTIDMSDPEALLRLVEEERPHFVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +  T      +       R                       
Sbjct: 89  EAIATDALATVEERGTAVVIPTARATQLTMNREGIRRLAAEELGLPTSPYEFAESLEEVR 148

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKD------QSIPLDLLQSSSWNHGDQLLIEQYV 172
            +   I  P VIKP+   S  G   ++            L   + +      +  ++   
Sbjct: 149 AATERIGFPCVIKPVMSSSGKGQSTVRDTGGVETAWEYALAGGRINYGRVIVEGFVDFDY 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +  +LT   +G      T    P           S        P  +        + +A 
Sbjct: 209 EITQLTVRAIGADGEVGTFFCEPIGHLQD-----SGDYVESWQPQPMSDAALARSREVAE 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RGI   +         V++ E++ +P
Sbjct: 264 KVTAALGGRGIFGVELFV--KGDDVYFSEVSPRP 295


>gi|66044525|ref|YP_234366.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. syringae B728a]
 gi|81308460|sp|Q4ZWZ4|PURT_PSEU2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|63255232|gb|AAY36328.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. syringae B728a]
 gi|330969032|gb|EGH69098.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. aceris str. M302273PT]
          Length = 393

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSTDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIVEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPV 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|16265196|ref|NP_437988.1| putative propionyl-CoA carboxylase alpha chain protein
           [Sinorhizobium meliloti 1021]
 gi|15141336|emb|CAC49848.1| putative propionyl-CoA carboxylase alpha chain protein
           [Sinorhizobium meliloti 1021]
          Length = 670

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 37/271 (13%), Positives = 80/271 (29%), Gaps = 26/271 (9%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++   +     D      +G   E+      LE   + +    + A     DK+ SK
Sbjct: 65  VIENILAAIRRTGADAVHPG-YGFLSENAAFAEALEKDGVTFIGPPVRAIEAMGDKITSK 123

Query: 98  QVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++ +  GV   P  +               I  P +IK   GG   G+ +   ++     
Sbjct: 124 KLAAEAGVFTVPGHMGLIEDADEAARIAAEIGFPVMIKASAGGGGKGMRIAWNEREAREG 183

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              S +           +++        +    L      +         ++  +     
Sbjct: 184 FQSSRNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNILYLGERECSIQRRNQKVIE 243

Query: 214 VLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
             P+    +  +      A    +A+G       +F+ D   R  ++LE+N +       
Sbjct: 244 EAPSPFLDEKTRRAMGEQAVALAKAVGYHSAGTVEFIVDA-GRNFYFLEMNTR------- 295

Query: 273 IFPEMAAY------AGYSFRELLLWMVEDAS 297
                  +       G    +L+  M+  A+
Sbjct: 296 ---LQVEHPVTELVTGL---DLVEQMIRVAA 320


>gi|320164656|gb|EFW41555.1| carbamoyl-phosphate synthase large subunit [Capsaspora owczarzaki
           ATCC 30864]
          Length = 1656

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL++ G +   ++ +                       V  VL   KPD    
Sbjct: 560 SGSQCIKALKEEGVQTILLNPNIATIQTGSDLADAVYFLPVNVEYVDHVLRKEKPDSILL 619

Query: 57  VLHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  V+     +   +      T    L ++   D         +  V V  +
Sbjct: 620 TFGGQTALNTGVECEKAGVFTKHGVRVLGTPITTLITSEDRDLFAKALGQINEPVAVSQA 679

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +I+       LG       + +     +S S     Q+L+E+
Sbjct: 680 VSTVDDALAAAASIGYPVIIRSAFALGGLGSGFADTPEQLSEMATRSLSLAP--QILVER 737

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +    Y  ++  
Sbjct: 738 SMKGW-KEVEYEVVRDAENNCITVCNMENFDPLGIHTGDSIVVAPSQTLTDKEYHSLRAA 796

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P + +   +E+N +  ++  S     +   GY    +  
Sbjct: 797 AIRIIRHLGVVGECNVQYALNPKTSEYCVIEVNAR--LSRSS--ALASKATGYPLAFVAA 852

Query: 291 WM 292
            +
Sbjct: 853 KI 854


>gi|315633349|ref|ZP_07888640.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           segnis ATCC 33393]
 gi|315477849|gb|EFU68590.1| phosphoribosylglycinamide formyltransferase 2 [Aggregatibacter
           segnis ATCC 33393]
          Length = 393

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 76/282 (26%), Gaps = 29/282 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D   +                    +  V+   +PD     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAQQVAHRAYTISMLDGAALRAVVEKERPDFIVPEV 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L         IP   +  L       +  + + +          I       
Sbjct: 84  EAIATDTLLELEQEGFTVIPTAKATKLTMNREGIRRLASEELGLPT-SPYEFIDNFDDFK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VI+    I        +   G        V+G    
Sbjct: 143 SAVEKIGVPCVVKPIMSSSGHGQSVIRTLDQIQSA--WDYAQEGGRAGAGRVIVEGFIKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++         +       +          P  +     K+ Q +A     A+
Sbjct: 201 DYEITQLTVRHVNGTSFLAPIGHI--QVDGDYRESWQPQAMSETALKKAQEIAEKITGAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           G RGI   +         V + E++ +P      +   ++  
Sbjct: 259 GGRGIFGVEMFV--RGDDVIFNEVSPRP--HDTGMVTMISQE 296


>gi|312867837|ref|ZP_07728042.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parasanguinis F0405]
 gi|311096592|gb|EFQ54831.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parasanguinis F0405]
          Length = 454

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDLMGDKINARKQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVLEESPSIAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +++G       +FL+D    + +++E+N +
Sbjct: 253 NQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNTR 293


>gi|222630995|gb|EEE63127.1| hypothetical protein OsJ_17935 [Oryza sativa Japonica Group]
          Length = 2314

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 285 PLECCLDSIPDEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRT 344

Query: 153 DLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 345 LFKQVQGEVPGSPIFIMRLAAQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 404

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P +   ++ +     A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 405 VTVAPRETVKELEQ----AARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 454


>gi|125551692|gb|EAY97401.1| hypothetical protein OsI_19330 [Oryza sativa Indica Group]
          Length = 2327

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 285 PLECCLDSIPDEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRT 344

Query: 153 DLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 345 LFKQVQGEVPGSPIFIMRLAAQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 404

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P +   ++ +     A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 405 VTVAPRETVKELEQ----AARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 454


>gi|91976903|ref|YP_569562.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris BisB5]
 gi|91683359|gb|ABE39661.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Rhodopseudomonas palustris
           BisB5]
          Length = 451

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHNLQFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M     I  P ++K   GG   G+ V    + + + +  + +        
Sbjct: 135 DGAVGPDDDAMSIAKEIGFPVLVKAAAGGGGRGMKVAHTAEDLSMAISTAGNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I  +    
Sbjct: 195 ASVYLEKYLQKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQKVWEESPSPVISAEARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGGICAKAMQDMNYVGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|322391065|ref|ZP_08064568.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           parasanguinis ATCC 903]
 gi|321142226|gb|EFX37701.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           parasanguinis ATCC 903]
          Length = 462

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ +++ +   GVPV P    
Sbjct: 85  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDLMGDKINARKQMIKAGVPVIPGSDG 144

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 145 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 204

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 205 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVLEESPSIAI----GKTLR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +++G       +FL+D    + +++E+N +
Sbjct: 261 NQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNTR 301


>gi|163790323|ref|ZP_02184755.1| pyruvate carboxylase [Carnobacterium sp. AT7]
 gi|159874394|gb|EDP68466.1| pyruvate carboxylase [Carnobacterium sp. AT7]
          Length = 1143

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 73/235 (31%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +    +    +  DK++
Sbjct: 61  LDI-EDLIRIAKDSGADAIHPG-YGFLSENIDFARRCEEEGIIFIGPKLHHLDIFGDKIK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +               P +IK   GG   G+ V K +  + 
Sbjct: 119 AKEAAIAAGIQSIPGSDGPVADLEGVKAFGKQYGYPIIIKAALGGGGRGMRVAKTEADVK 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L  T   +         ++      
Sbjct: 179 DSFERAQSEAKAAFGSGEIYVERYIQDPKHIEVQILGDTHGNIVHLYERDCSVQRRHQKV 238

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   I  ++  ++   A    + +G       +FL        +++E+N +
Sbjct: 239 VEVAPCVSISDELRMKMCESAVQLMEHVGYVNAGTVEFLL--EGENFYFIEVNPR 291


>gi|149247164|ref|XP_001528007.1| acetyl-CoA carboxylase [Lodderomyces elongisporus NRRL YB-4239]
 gi|146447961|gb|EDK42349.1| acetyl-CoA carboxylase [Lodderomyces elongisporus NRRL YB-4239]
          Length = 2302

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 50/162 (30%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            ++    I  P +IK  +GG   GI  +++ +       Q  +   G 
Sbjct: 297 IYSKGCCTGPEDGLEKAQKIGFPVMIKASEGGGGKGIRKVERAEDFKHAYDQVENEIPGS 356

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I Q   D   L   ++ D       +            +                + 
Sbjct: 357 PIFIMQLAGDARHLEVQLLSDQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTVAKKET 412

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  ++  A    + +G       ++L+     K ++LE+N +
Sbjct: 413 FTAMENAAIRLGKLVGYVSAGTVEYLYSHKDDKFYFLELNPR 454


>gi|90408131|ref|ZP_01216300.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
 gi|90310743|gb|EAS38859.1| acetyl-CoA carboxylase multifunctional enzyme accADC,
            carboxyltransferase subunit alpha/carboxyl transferase
            subunit [Psychromonas sp. CNPT3]
          Length = 1520

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 85/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  +  + + D     + G   E      +     I +    + +     +K  + +  
Sbjct: 1012 SVLKIAEYEEVDALHPGI-GFLSESPQFADLCVGHGINFIGPSMDSMLTMGNKSNAIKTA 1070

Query: 101  SSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               GVPV P            +D  + I  P ++K + GG   GI+VI+K + +     Q
Sbjct: 1071 QDHGVPVVPGSHGILTGAEQALDIANGIGYPVLLKAVNGGGGKGILVIEKAEDMFTGFAQ 1130

Query: 157  -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  S++ +GD  L +       +   ++ D   +   + +          K    ++
Sbjct: 1131 VSAEARSAFGNGDLYLEKYITSLRHIEVQLLRDKQGNTRVLGIRDCSVQRNNQKVVEESA 1190

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP      + +          +A+   G    +F++D     ++++E+N +
Sbjct: 1191 STMLPK----KLEELAMTYTESLAEAVDYMGAGTVEFIYDLDEDAIYFMEMNTR 1240


>gi|33239526|ref|NP_874468.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|33237051|gb|AAP99120.1| Biotin carboxylase [Prochlorococcus marinus subsp. marinus str.
           CCMP1375]
          Length = 449

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 44/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQ---SIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++   +    +       S    G+  L  +       
Sbjct: 149 AKDMGYPVMIKATAGGGGRGMRLVNDQESIEELFKAAQGESEAAFGNAGLYMEKFIDKPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +   +   +   A  A ++
Sbjct: 209 HVEVQILADSLG--NVVHLGERDCSIQRRHQKLLEESPSPALDEQLRMRMGEAAVSAAKS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D  S   +++E+N +
Sbjct: 267 INYEGAGTVEFLLD-RSGNFYFMEMNTR 293


>gi|87121005|ref|ZP_01076897.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121]
 gi|86163843|gb|EAQ65116.1| carbamoyl-phosphate synthase, putative [Marinomonas sp. MED121]
          Length = 452

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 14/248 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   ++    L   K      + H        G   E+     +LE   I +    
Sbjct: 46  EAFHIGPAKASESYLQAHKILEVCQLAHVDAVHPGYGFLSENTEFARLLEQNGIIWIGPS 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS-----QHLISPPYVIKPLKGGSS 138
             +     DK R++ +    GV V P          +       ++  P ++K   GG  
Sbjct: 106 AKSILDMGDKERARSLAVYAGVNVLPGSRRFTLDDHNGLLEAAEVVGFPLLVKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           +G+ +++  Q++   +  +             +++        +                
Sbjct: 166 IGMRLVESAQNLAQTVESTQQMAARSFGDGTIFMERYVAKARHIEIQVFGFGNGRAIHLY 225

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          PA  IP  I  ++   A    Q     G    +F+ D  + + 
Sbjct: 226 ERECSIQRRFQKIIEEAPAPGIPTAIRDDMAAAAVRLTQEQNYLGAGTVEFILDADTFEY 285

Query: 258 FWLEINVQ 265
           F+LE+N +
Sbjct: 286 FFLEMNTR 293


>gi|110632501|ref|YP_672709.1| hypothetical protein Meso_0139 [Mesorhizobium sp. BNC1]
 gi|110283485|gb|ABG61544.1| protein of unknown function DUF201 [Chelativorans sp. BNC1]
          Length = 410

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 38/220 (17%), Positives = 67/220 (30%), Gaps = 13/220 (5%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
                          +K    +  +  GV   P+   +     SQ  I  P V+KP  GG
Sbjct: 118 YRVILPDWERLKWVCEKPLLYRRAAELGVDFPPTYGFSSLEEASQADIRFPVVLKPNMGG 177

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
                   K  ++   +L  ++     +Q+  E  V    +  G     S          
Sbjct: 178 GHDEFSRAKVIRADDRELFLTAYRTAAEQIGFENVVVQELIPGGGESQFSYAALWNEGRP 237

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
              ++                 + +     V   A     +IG  G+   +F +D    +
Sbjct: 238 VAEFAARRLRQFPVDFGYTSTFVKVVEEPRVIEAARRILSSIGHCGLVEVEFKYDARDDR 297

Query: 257 VFWLEINVQP----GMTPVSIFPEMAAYAGYSFRELLLWM 292
           +  L++N +P    G+T         A AG  F  +L  M
Sbjct: 298 MRVLDVNPRPWSWFGLT---------AAAGADFGAMLWSM 328


>gi|221632246|ref|YP_002521467.1| carbamoyl-phosphate synthase large subunit [Thermomicrobium roseum
           DSM 5159]
 gi|254813666|sp|B9KXM5|CARB_THERP RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|221156776|gb|ACM05903.1| carbamoyl-phosphate synthase, large subunit [Thermomicrobium roseum
           DSM 5159]
          Length = 1078

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 98/302 (32%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQID-------VDRS--------------VGLVLAHLKPDLAFN 56
           SG     AL + G +   ++        D                +  ++A  +P+    
Sbjct: 29  SGSQALRALREEGIRTIIVNSNPATIMTDEDMADAVYIEPLTVEVLERIIARERPEGLLA 88

Query: 57  VLHGNFGEDGLVQ----AILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
            L G  G +  V      +L+   +    + + A   + D+   K+++      V    +
Sbjct: 89  TLGGQTGLNLAVALAEAGVLDRYGVRLLGTPLEAIRRAEDRQLFKELLLEIGEPVLESLT 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     + PP +++P       G  +   +  +   + +  + +   Q+L+E+
Sbjct: 149 AYSVEDALRFAEEVPPPLIVRPAFTLGGTGGGIAFSEDELVTLVQRGIAASPIGQVLVER 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 D Y+ ++  
Sbjct: 209 SLLGWKEIEYEVMRDANDTCITICNIENLDPMGVHTGDSIVVAPSQTLSDRD-YQMLRSA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+G  G     F  DP S + + +E+N  P ++  S     +   GY    +  
Sbjct: 268 ALKIIRALGIVGGCNIQFALDPRSDQYYVIEVN--PRVSRSS--ALASKATGYPIARIAA 323

Query: 291 WM 292
            +
Sbjct: 324 KL 325



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/174 (19%), Positives = 67/174 (38%), Gaps = 11/174 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +++P        + V+ + + +   L  S ++  G  +LI++Y+DGIEL   
Sbjct: 703 AERIGYPVLVRPSYVLGGRAMEVVYRREHLEQYLATSGAFASGRPVLIDKYLDGIELEVD 762

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            + D    +     P    +       S +S  V PA     ++ +   R       A+ 
Sbjct: 763 ALCDGHEVLV----PGIMQHIERAGVHSGDSFAVYPAVELPSVHVDTLVRYTTEIALALA 818

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            RG+    F+       V+ LE+N +   T     P ++   G    ++   ++
Sbjct: 819 ARGLINIQFVLHQ--GVVYVLEVNPRASRT----VPFLSKVTGVPMVDVATQIL 866


>gi|212637172|ref|YP_002313697.1| ATP-binding:carbamoyl-phosphate synthetase large subunit [Shewanella
            piezotolerans WP3]
 gi|212558656|gb|ACJ31110.1| Carbamoyl-phosphate synthase L chain, ATP-binding:Carbamoyl-phosphate
            synthetase large chain, Biotin carboxylase [Shewanella
            piezotolerans WP3]
          Length = 1517

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
                VPV P            ++    I  P ++K ++GG   GI V+++ + +     +
Sbjct: 1065 QDQDVPVVPGSHGILTNAEQAVNVATEIGYPVLLKAVQGGGGKGIQVVERPEDMIELFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKQKVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|253688221|ref|YP_003017411.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
 gi|259547245|sp|C6DFT2|PURT_PECCP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|251754799|gb|ACT12875.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           carotovorum subsp. carotovorum PC1]
          Length = 392

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 31/282 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D      L    +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQIAHRSHVINMLDGDALKALVEAERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVTLEKQGHHVVPCAEATRLTMNREGIRRLAAETLGVPT-STYRFADSEESFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  +I+  + +             G   +I + +   + 
Sbjct: 143 QAVEAIGYPCIVKPVMSSSGKGQSLIRSAEQLDKAWNYAQQGGRAGGGRVIVEGLVNFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P ++     +  Q++A    +A
Sbjct: 203 EITLLTVHAVDGIHFCAPIGHRQE-----DGDYRESWQPQQMSALAQERAQKMASDVVKA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 258 LGGYGLFGVELFVC--GDEVIFSEVSPRP--HDTGMVTMISQ 295


>gi|256810529|ref|YP_003127898.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           fervens AG86]
 gi|256793729|gb|ACV24398.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           fervens AG86]
          Length = 501

 Score = 49.1 bits (115), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/318 (10%), Positives = 81/318 (25%), Gaps = 54/318 (16%)

Query: 19  GKACASALEDAGFKVSQID---VDRSVGLVLAHL--------------KPDLAFNVLHGN 61
                 A  + G K   +      RS+ + LA                  D   NV    
Sbjct: 14  AIRIIRACWELGIKTVAVYSEADKRSLHVTLADEAYCIGPSPAAKSYLNIDAILNVAEKA 73

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP------------ 109
             +              +  +   A    +             +                
Sbjct: 74  KVDAIHPGYGFLAENAEFARAVKKAGFEFIGPNPKAIEAMGSKINAKKIMKKAGVPLIPG 133

Query: 110 ---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              ++      ++    I  P V+K   GG  +G+ V    + +   +  + +       
Sbjct: 134 SDGAVEDVDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELKDVIESAKNIAKSAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
               +++        +    L      +         ++          P   +  ++ +
Sbjct: 194 DPTVFIEKYLENPRHIEIQLLGDKHGNIIHLGDRECSIQRRHQKLIEEAPSPIMTEELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY----- 280
            +   A  A +AI        +FL+   +   ++LE+N +              +     
Sbjct: 254 RMGEAAIKAGKAINYDSAGTVEFLY--ENGNFYFLEMNTR----------IQVEHTVTEQ 301

Query: 281 -AGYSFRELLLWMVEDAS 297
             G    +L+  M++ A+
Sbjct: 302 VTGI---DLVKAMIKIAA 316


>gi|331695454|ref|YP_004331693.1| methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
 gi|326950143|gb|AEA23840.1| Methylcrotonoyl-CoA carboxylase [Pseudonocardia dioxanivorans
           CB1190]
          Length = 664

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++    S+   +  +             +++   +   
Sbjct: 151 ADRIGFPVLVKAAFGGGGRGMRIVHDADSLREAVDGARREAASAFGDGTVFLERYVVDPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++          P+    D +  E+   A  A +AIG
Sbjct: 211 HVEVQILGDTHGDVVHLFERECSIQRRYQKIVEESPSPAVDDALRAELGAAAVAAGKAIG 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+ D    + F+LE+N +
Sbjct: 271 YTGAGTVEFVLD-QDGRFFFLEVNTR 295


>gi|319441762|ref|ZP_07990918.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Corynebacterium variabile DSM 44702]
          Length = 649

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/238 (13%), Positives = 70/238 (29%), Gaps = 13/238 (5%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + +DV++ +  +      D      +G   E       +    + +        +   DK
Sbjct: 59  TYLDVNK-IIDIAKRSGADAVHPG-YGFLSEVPEAAQAIADAGLTWLGPAADTISQLGDK 116

Query: 94  MRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
           + +++V  + GV   P     +               P V+K   GG   GI V++ +Q 
Sbjct: 117 ISARRVAIAAGVEPVPGTVDPVSDMAEVDAFIAEHGFPIVLKRSDGGGGRGIEVMRDEQD 176

Query: 150 IPLDLLQSSSWNHG--DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +       +          + +    G  +    M D   +   +            K  
Sbjct: 177 VKNFAAGHAMAGGDLGKFFIEKFITSGRHIETQCMRDVHGNFAVVTTRDCSVQRRNQKVI 236

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +P      + +     +       G  G+   +F+       + +LE+N +
Sbjct: 237 EEAPAPFMPEGAVETLTQW----SKALFDHTGYVGLGTCEFMLTDEGN-LHFLEVNPR 289


>gi|315638017|ref|ZP_07893202.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
 gi|315481865|gb|EFU72484.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
          Length = 443

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 87/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     + +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQNFVEICAKHNLKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFL 233
                  +    +  +   V         ++          PA +  +  +  +   A  
Sbjct: 203 YIQNPRHIEVQVVGDSFGNVIHIGERDCSMQRRHQKLIEESPAILLDEKTRARLHETAVK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AIG  G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAIGYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIELMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|308481313|ref|XP_003102862.1| hypothetical protein CRE_29875 [Caenorhabditis remanei]
 gi|308260948|gb|EFP04901.1| hypothetical protein CRE_29875 [Caenorhabditis remanei]
          Length = 687

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP---------------DLAFN----- 56
                +     G +   +  D DR+   V    K                D   N     
Sbjct: 31  AIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAFHIGPPLAAESYLNMDKIINTAIRS 90

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+           + +      A      K  SKQ++    VPV   
Sbjct: 91  GAQAIHPGYGFLSENAGFADRCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKG 150

Query: 111 ILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
                            I  P ++K + GG   G+ +   +      L  + +     + 
Sbjct: 151 FHGEDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEAEFDEKLASARNEAKKSFG 210

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + + L+ +       +   V GD   +   +            +             +  
Sbjct: 211 NDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWERDCSVQ----RRHQKIIEEAPAPNMAH 266

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++   A  A  A+G  G    +F+ DP   + F++E+N +
Sbjct: 267 ETRLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFFFMEMNTR 309


>gi|308453676|ref|XP_003089535.1| hypothetical protein CRE_22213 [Caenorhabditis remanei]
 gi|308239882|gb|EFO83834.1| hypothetical protein CRE_22213 [Caenorhabditis remanei]
          Length = 769

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 80/284 (28%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVLAHLKP---------------DLAFN----- 56
                +     G +   +  D DR+   V    K                D   N     
Sbjct: 113 AIRVQNTARKMGIETVAVFSDADRNSLFVKKADKAFHIGPPLAAESYLNMDKIINTAIRS 172

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+           + +      A      K  SKQ++    VPV   
Sbjct: 173 GAQAIHPGYGFLSENAGFADKCAQAGLVFIGPPAQAIRDMGAKNVSKQIMEDAKVPVVKG 232

Query: 111 ILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
                            I  P ++K + GG   G+ +   +      L  + +     + 
Sbjct: 233 FHGEDQSDANLKKKSQEIGYPVMLKAVYGGGGKGMRIAWNEAEFDEKLASARNEAKKSFG 292

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           + + L+ +       +   V GD   +   +            +             +  
Sbjct: 293 NDEMLVEKFVEKPRHVEVQVFGDHHGNYVHLWERDCSVQ----RRHQKIIEEAPAPNMAH 348

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++   A  A  A+G  G    +F+ DP   + F++E+N +
Sbjct: 349 ETRLKLGESAVRAAAAVGYVGAGTVEFIMDPR-GEFFFMEMNTR 391


>gi|114778757|ref|ZP_01453567.1| acetyl-CoA carboxylase [Mariprofundus ferrooxydans PV-1]
 gi|114551008|gb|EAU53571.1| acetyl-CoA carboxylase [Mariprofundus ferrooxydans PV-1]
          Length = 449

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 80/253 (31%), Gaps = 31/253 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I+    + +      +  +  DK+ +KQ +    VP+ P     +   
Sbjct: 82  YGFLAENASFAEIVSESGLVWIGPTPESMRIMGDKVAAKQKMDEANVPLVPGSDGAVTTV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                       P ++K   GG   G+ V+  + S+P       S     +      + +
Sbjct: 142 DEAKAIAKAAGFPVIVKASAGGGGRGMKVVHSEASLPNAFSMCQSEAGAAFGDDTVFIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+GD   ++  +   +        K      +  +  +    I      
Sbjct: 202 YLEEPRHIEVQVLGDKHGNIVHLFERECSMQRNNQKVLEEAPSPFVDDETRAKICAAGVA 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A          G    +FL +P  +  +++E+N       P +T              +
Sbjct: 262 AARAV----DYVGAGTIEFLMNP-DKSFYFIEMNTRIQVEHP-VTEW-----------IT 304

Query: 285 FRELLLWMVEDAS 297
             +L+ W +  AS
Sbjct: 305 GVDLIEWQIRVAS 317


>gi|3219361|gb|AAC23573.1| biotin carboxylase precursor [Glycine max]
          Length = 539

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 83/252 (32%), Gaps = 31/252 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPAEFVKFLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A  A  +IG  G+   +FL D      +++E+N       P         EM      S
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTRIQVEHP-------VTEM-----IS 374

Query: 285 FRELLLWMVEDA 296
             +L+   +  A
Sbjct: 375 STDLIEEQIRVA 386


>gi|227328634|ref|ZP_03832658.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 392

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 31/282 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D      L    +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGDALKALVEAERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVTLEKQGHHVVPCAEATRLTMNREGIRRLAAETLGVPT-STYRFADSEENFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  +I+  + +             G   +I + +   + 
Sbjct: 143 QAVDAIGYPCIVKPVMSSSGKGQSLIRSAEQLDQAWSYAQQGGRAGGGRVIVEGLVNFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P ++     +  Q++A    +A
Sbjct: 203 EITLLTIHAVDGIHFCAPIGHRQE-----DGDYRESWQPQQMSALAQERAQKMASDVVKA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 258 LGGYGLFGVELFVC--GDEVIFSEVSPRP--HDTGMVTMISQ 295


>gi|156405052|ref|XP_001640546.1| predicted protein [Nematostella vectensis]
 gi|156227681|gb|EDO48483.1| predicted protein [Nematostella vectensis]
          Length = 1140

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/228 (14%), Positives = 68/228 (29%), Gaps = 7/228 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +    + D      +G   E            I +         +  DK+ +++V 
Sbjct: 61  EIIRIAKDKECDAIHPG-YGFLSERADFARACTKSGIIFIGPSPQVVHMMGDKLEARKVA 119

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVPV P     I               P + K   GG   G+ VI     +      
Sbjct: 120 VEAGVPVVPGTAEPIRNAEDARAFCQEHGLPVITKAAYGGGGRGMRVIWNLDDVEKYFTL 179

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +S+  +        +++        +    +      V         ++        + P
Sbjct: 180 ASNEAYAAFGDGSMFIEKFIEKPRHIEVQVMGDNYGDVVHLFERDCSVQRRHQKVIEIAP 239

Query: 217 AKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A +  + I + +   A    +A+G       +FL D      +++E+N
Sbjct: 240 APLLDENIRQTLTEDAVRLCKAVGYSNAGTVEFLLDQEGNH-YFIEVN 286


>gi|301632306|ref|XP_002945230.1| PREDICTED: hypothetical protein LOC100498143 [Xenopus (Silurana)
           tropicalis]
          Length = 1123

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 AKAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKTEAGVAFGNPAVYMEKYLQNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          PA  I   + + +      A + IG
Sbjct: 209 HIEIQVMADKFKNAVYLGERDCSMQRRHQKVIEEAPAPGIARKLIERIGERCVAACKKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|218526224|gb|ACK86519.1| carbamoyl-phosphate synthase [Norfolius howensis]
          Length = 711

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 126 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPKYVEQVIRSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G       + E        + I +   + D+    + ++     V    +
Sbjct: 186 TFGGQTALNCGVQLEKAGVFEKYGCKILGTPIQSIIETEDRKMFAEKINEIGENVAPSAA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 246 VYSVEEALDAAEKIDYPVMARAAFSLGGLGSGFAHNKEQLRC--LATQALAHSNQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AINVIRHFGVIGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|257051158|ref|YP_003128991.1| carbamoyl phosphate synthase large subunit [Halorhabdus utahensis
           DSM 12940]
 gi|256689921|gb|ACV10258.1| carbamoyl-phosphate synthase, large subunit [Halorhabdus utahensis
           DSM 12940]
          Length = 1073

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/303 (13%), Positives = 95/303 (31%), Gaps = 42/303 (13%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  +         D               ++  ++   +PD    
Sbjct: 28  SGAQACRALQEEGARVVLVNSNPATIMTDPEMADEVYLEPINTEAIAEIIRKEEPDGVIA 87

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +       + +LE  ++    + +     + D+ + ++ +   G PV  S  
Sbjct: 88  GLGGQTGLNVTAELAEEGVLEEHDVDVMGTPLDTIYATEDREQFRKRMEKIGEPVPASTT 147

Query: 113 VNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +         +      P +++        G  VI     +     +    +  D+++I 
Sbjct: 148 IKSMDEVEAAVEEVGGLPVIMRTTYTLGGAGSGVIGDMDELKEATRKGLRLSRDDRVMIT 207

Query: 170 QYVDGI---ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           + +DG    E       D S  +            +  +   +  + V+P +   +    
Sbjct: 208 ESIDGWIELEYEVMRDADDSCIIICNMENLDPMGIHTGESMVVTPSQVIPDEGHQE---- 263

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWLEINVQPGMTPVSIFPEMAAYAGY 283
           ++  A    + +   G     F +        +   +E+N  P ++  S     +   GY
Sbjct: 264 MRDTALKVIRELEIHGGCNIQFAWRDDGSPGGEYRVVEVN--PRVSRSS--ALASKATGY 319

Query: 284 SFR 286
              
Sbjct: 320 PIA 322



 Score = 43.7 bits (101), Expect = 0.036,   Method: Composition-based stats.
 Identities = 41/332 (12%), Positives = 93/332 (28%), Gaps = 50/332 (15%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + V+ GG        +  G+             ALE+ G     ++ +            
Sbjct: 588 VVVVGGGP-------IRIGQGVEFDYCSVHAVRALEEIGIDAHVVNNNPETVSTDYDTSD 640

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLE----IPYTHSGILA 86
                      V  V+     D       G    D       EL           + + A
Sbjct: 641 GLFFEPITAEEVADVVEETGADGVMVQFGGQTSVDIGHPLEAELDRRGLDCEVMGTSVDA 700

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+ R  +++   G+               +    I  P +++P        + V+
Sbjct: 701 MDLAEDRDRFNRLMDDLGIAQAEGGTATSEAEALELARDIGYPVLVRPSYVLGGRAMEVV 760

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             D  +   + ++   +    +L++ ++    +   V   A  D   I        +  +
Sbjct: 761 YNDDDLKTYIEEAVRVSPDKPILVDDFL-ADAIELDVDAVADGDDILIGGVMEHVETAGV 819

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                       +    ++   ++ +      A+   G+            +V+ LE N 
Sbjct: 820 HSGDSACMIPPRSDEIENVMPRIREVTEQIAGALETVGLMNVQLAV--RDGEVYVLEANP 877

Query: 265 QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +   T     P ++   G    +L   ++  A
Sbjct: 878 RSSRT----VPFVSKATGVPIAKLAAKVMAGA 905


>gi|307152494|ref|YP_003887878.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7822]
 gi|306982722|gb|ADN14603.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7822]
          Length = 448

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKITFIGPSPEAILAMGDKSTAKKTMQRAGVPTIPGSGG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I   +   +    I  P +IK   GG   G+ +++ +  +P  L  +            
Sbjct: 138 LIDSEKQAKEIAAQIGYPVLIKATAGGGGRGMRLVRSESELPALLQAAQGEAGAAFGNSG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +           V         ++          P+      + +++ 
Sbjct: 198 VYLEKFIECPRHIEFQIFADQFGNVVHLGERDCSIQRRHQKLLEEAPSPFLTPKLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A Q+I   G    +FL D      +++E+N +
Sbjct: 258 QAAVKAAQSIKYVGAGTVEFLVDKHGN-FYFMEMNTR 293


>gi|118445079|ref|YP_879125.1| pyruvate carboxylase [Clostridium novyi NT]
 gi|118135535|gb|ABK62579.1| pyruvate carboxylase [Clostridium novyi NT]
          Length = 1145

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   + ++ G + A+L  D   +    
Sbjct: 17  AIRIFRACNELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNQGPIEAYLNIDEIISLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK++SK V  S  VP  P
Sbjct: 77  KGVDAIHPGYGFLSENAEFARKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVNVPTIP 136

Query: 110 SILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +          +        P ++K   GG   G+ +++    +      + +     +
Sbjct: 137 GVEKPVTSEEEAIKFAEYCGYPIMLKAAAGGGGRGMRIVRNKDELIPSFKSAKNEAKKAF 196

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   V+GD   ++  +            K         LP +  
Sbjct: 197 GIDDIFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKEKR 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    +++G R     +FL D      +++E+N +
Sbjct: 257 EEICN----DALKIARSVGYRSAGTLEFLVDMHGNH-YFIEMNPR 296


>gi|150398333|ref|YP_001328800.1| pyruvate carboxylase [Sinorhizobium medicae WSM419]
 gi|150029848|gb|ABR61965.1| pyruvate carboxylase [Sinorhizobium medicae WSM419]
          Length = 1184

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +     
Sbjct: 188 AEEIGYPVMLKASWGGGGRGMRAIRDPKDLIREVTEAKREAKAAFGKDEVYLEKLVERAR 247

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++  +       PA    +   +E+   +    +A  
Sbjct: 248 HVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLTEAQRQELADYSLKIARATS 307

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L D  + + +++E+N +
Sbjct: 308 YIGAGTVEYLMDADTGRFYFIEVNPR 333


>gi|15672651|ref|NP_266825.1| pyruvate carboxylase [Lactococcus lactis subsp. lactis Il1403]
 gi|12723576|gb|AAK04767.1|AE006300_2 pyruvate carboxylase [Lactococcus lactis subsp. lactis Il1403]
          Length = 1137

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V   D  +     ++ S   G     E YV+      
Sbjct: 146 FAKTYGYPVMIKAALGGGGRGMRVASNDAEMHDGYARAKSEAIGAFGSGEIYVEKYIENP 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAI 238
             +    L  +   +         ++  +     + PA     D   E+   A    + +
Sbjct: 206 KHIEVQILGDSHGNIIHLHERDCSVQRRNQKVIEIAPAVGLSLDFRNEICEAAVKLCKNV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL      K +++E+N +
Sbjct: 266 GYVNAGTVEFLV--KDDKFYFIEVNPR 290


>gi|327467144|gb|EGF12654.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK330]
          Length = 455

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|325266645|ref|ZP_08133322.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella denitrificans
           ATCC 33394]
 gi|324982088|gb|EGC17723.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella denitrificans
           ATCC 33394]
          Length = 456

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEKSGFIFIGPKADTIRLMGDKVSAKHAMIEAGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    + +   +  P +IK   GG   G+ V++K + +   +  + +         
Sbjct: 137 ALSDDPAEILKTADKVGFPVIIKASGGGGGRGMRVVEKKEDLIKAVEMTKAEAEAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L                ++          P   I  +   ++
Sbjct: 197 MVYMERFLQRPRHVEIQVLADEHGNAIYLGERDCSMQRRHQKIIEEAPAPFITPEERAKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +    A + IG RG    +FL+     + F++E+N +
Sbjct: 257 GQSCADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|300726773|ref|ZP_07060203.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bryantii
           B14]
 gi|299775886|gb|EFI72466.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bryantii
           B14]
          Length = 393

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 75/238 (31%), Gaps = 12/238 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V+   +PD+    +      + L     + +++  +   +  +            
Sbjct: 54  DALTAVVNKHQPDIIVPEIE-AIRTERLFDFEKQGVQVVPSARAVNYTMNRRAIRDLASQ 112

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                               +   I  P V+KPL   S  G   +  D  +      +  
Sbjct: 113 ELGLRTAKYFYAKTFDEFKKAADEIGFPCVVKPLMSSSGHGQSYVHNDDELKEAFKDAME 172

Query: 160 WNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              GD  +++IE+++D       +        T    P         +         +P 
Sbjct: 173 EGRGDVKEVIIEEFIDFDSEFTLLTVTQKNLPTLFCPPIGHI-----QKGGDYRESWMPY 227

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMTPVS 272
           +I  +  K  + +A    +A+   GI   +F       +V + E++ +P   GM  +S
Sbjct: 228 QISEEALKTAEHMADEVTKALTGYGIWGVEFFLTKQ-GEVIFSELSPRPHDTGMVTLS 284


>gi|312114891|ref|YP_004012487.1| carbamoyl-phosphate synthase, large subunit [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311220020|gb|ADP71388.1| carbamoyl-phosphate synthase, large subunit [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 1109

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 86/308 (27%), Gaps = 37/308 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG     AL   G+++  +         D D +    +  + PD+               
Sbjct: 29  SGTQACKALRQEGYRIILVNSNPATIMTDPDLAHATYIEPITPDMVTKVIERERREHPDE 88

Query: 55  ----FNVLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                  + G    +         +L+   I    +   A   + D+   ++ +   G+ 
Sbjct: 89  RMALLPTMGGQTALNTALKLARDGVLDRFGIELIGANADAIDKAEDRQLFREAMKKIGLA 148

Query: 107 VCPSILVNRFTMDSQHLISPPY--VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
              S L          L   P   +I+P       G  +    +       +    +   
Sbjct: 149 TPKSRLAQTLQEAIDALEHVPLPAIIRPSFTLGGTGGGIAYNREEYLHICERGLEASPTT 208

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           Q+L+E+ V G +     +     D   I     +     +      +          +  
Sbjct: 209 QILVEESVLGWKEYEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDREYQ 268

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G S   F  +P   K+  +E+N  P ++  S     +   G+ 
Sbjct: 269 IMRNASIAVLREIGVETGGSNVQFAVNPADGKLVVIEMN--PRVSRSS--ALASKATGFP 324

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 325 IAKVAAKL 332



 Score = 38.7 bits (88), Expect = 0.96,   Method: Composition-based stats.
 Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 6/73 (8%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +     +E++R      +A+   G+    +        V+ LE+N +   T  
Sbjct: 831 CSLPPHSLCEKTLRELERQTADIARALNVVGLMNIQYAV--KDGDVYVLEVNPRASRT-- 886

Query: 272 SIFPEMAAYAGYS 284
              P +A   GY 
Sbjct: 887 --VPFVAKVIGYP 897


>gi|295675037|ref|XP_002798064.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
 gi|226280714|gb|EEH36280.1| biotin carboxylase [Paracoccidioides brasiliensis Pb01]
          Length = 666

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGADELQSAVDRATGESPSKKVFVEKAAVGSFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
            V     +      V         ++          P       +  +V   A    + I
Sbjct: 212 EVQ---VIGDGTGEVRHLWERDCSVQRRFQKIVECTPAMMKDRKLVSKVIESALKMAKKI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + F+LE+N +
Sbjct: 269 KYLSLGTFEFLVSETLSEFFFLEVNPR 295


>gi|74316199|ref|YP_313939.1| acetyl-CoA carboxylase biotin carboxylase subunit [Thiobacillus
           denitrificans ATCC 25259]
 gi|74055694|gb|AAZ96134.1| acetyl-CoA carboxylase, biotin carboxylase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 449

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +         L  DK+ +KQ +    VP  P         
Sbjct: 82  YGFLSENADFAERVESSGFTFIGPRPDNIRLMGDKVAAKQAMIDAKVPCVPGSDGALADD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +  + +   I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PQEILKTARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKTEAGAAFGNPMVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
               T   +    L                ++          PA      +  ++     
Sbjct: 202 KFLETPRHIEIQILADEHGNAVHLGERDCSMQRRHQKVLEEAPAPGLDPKLRDKIGERCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 EACRKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|325695142|gb|EGD37043.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK150]
          Length = 455

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAEVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|324995086|gb|EGC26998.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK678]
 gi|327461876|gb|EGF08207.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1]
          Length = 455

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|322710501|gb|EFZ02075.1| hypothetical protein MAA_01657 [Metarhizium anisopliae ARSEF 23]
          Length = 779

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++++   +  +L  + S         +  ++       
Sbjct: 176 ADEIGYPVMLKASAGGGGKGMRIVRERGQLRAELETARSEAARYFGSSDCILEKYIEQGK 235

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +      V         ++          P+    D  ++    +A    + + 
Sbjct: 236 HIEIQIMGDGYGNVLSLGERDCSVQRRHQKVIEEAPSPWLDDAKRKEMSNVAVTIGRLLN 295

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+FD  +   ++LE+N +
Sbjct: 296 YENAGTVEFVFDVATGNFYFLEVNTR 321


>gi|183585292|gb|ACC63960.1| D-alanine-D-alanine ligase [Clostridium perfringens]
          Length = 131

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 4/109 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           D++KEV+++A   ++ + C   +R D L          LE+N  PGMT 
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPNVLEVNTLPGMTK 131


>gi|125718724|ref|YP_001035857.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sanguinis SK36]
 gi|125498641|gb|ABN45307.1| Biotin carboxylase, putative [Streptococcus sanguinis SK36]
 gi|324993602|gb|EGC25522.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK405]
 gi|327462374|gb|EGF08699.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1057]
          Length = 455

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|121606459|ref|YP_983788.1| phosphoribosylglycinamide formyltransferase 2 [Polaromonas
           naphthalenivorans CJ2]
 gi|171769299|sp|A1VT89|PURT_POLNA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|120595428|gb|ABM38867.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Polaromonas naphthalenivorans CJ2]
          Length = 401

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/277 (13%), Positives = 78/277 (28%), Gaps = 31/277 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++   KPDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEQEKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                           +  IP   +  L       +  + + ++    P      +    
Sbjct: 84  EAIATGMLEELEAAGTVRVIPTARAARLTMDREGIRRLAAETLALPTSPYVFCDSLEELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--- 174
                 I  P V+KP+   S  G   I   + +        +   G        V+G   
Sbjct: 144 TAIDSKIGYPCVVKPVMSSSGKGQSKIALPKDVAPA--WDHAMAGGRVSRGRVIVEGFVD 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            E    ++   +L                L+ S        P  +     ++   +A   
Sbjct: 202 FEYEITLLTVRALGADGQVETHFCEPIGHLQVSGDYVESWQPHPMRPAALEKSHEIARAV 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
              +  +G+   +        +V++ E++ +P   GM
Sbjct: 262 TDNLSGQGVFGVELFV--KGDEVWFSEVSPRPHDTGM 296


>gi|332971468|gb|EGK10421.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           1501(2011)]
          Length = 449

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+      +E   I +         L  +K   + + +      VP     +   
Sbjct: 82  YGFLAENAEFAENIEEAGITFVGPHPDHIRLMGNKVSAINAMKQAGVPTVPGSVGTVTLH 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQ 170
              +    I  P +IK   GG   G+ ++ +   +   +  +       +      +   
Sbjct: 142 NAEEQAKNIGFPLLIKAAAGGGGRGMRIVDRFDQLNEQVQAAKQEAELWFGDDSVYMERY 201

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +   +   ++GD + +   +            K         +P     DI + + + 
Sbjct: 202 LQNPRHIEVQILGDGNGNAIHLYDRDCSLQRRHQKVLEEAPAPDIPD----DIREPILQA 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A + IG RG    +FLF     + F++E+N +
Sbjct: 258 CVKACEDIGYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|327488990|gb|EGF20786.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1058]
          Length = 455

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|282898689|ref|ZP_06306677.1| Acetyl-CoA carboxylase, biotin carboxylase [Cylindrospermopsis
           raciborskii CS-505]
 gi|281196557|gb|EFA71466.1| Acetyl-CoA carboxylase, biotin carboxylase [Cylindrospermopsis
           raciborskii CS-505]
          Length = 448

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +   H I  P +IK   GG   G+ +++ +         +            
Sbjct: 138 LVETETQGLAIAHQIGYPVMIKATAGGGGRGMRLVRSEDEFIKLFHAAQGEAGAAFGNAG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L      V         ++  +       P+    + + +++ 
Sbjct: 198 VYIEKFIERPRHIEFQILADNYGNVIHLGERDCSIQRRNQKLLEEAPSPALDEDLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A Q I   G    +FL D  S   +++E+N +
Sbjct: 258 HAAVKAAQFINYTGAGTIEFLLD-KSGHFYFMEMNTR 293


>gi|218526258|gb|ACK86536.1| carbamoyl-phosphate synthase [Rapisma cryptunum]
          Length = 596

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 85/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 8   SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLIPEYVEQVIRSERPGGVLL 67

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 68  TFGGQTALNCGVELEKAGVFEKYGCKILGTPIQSIINTEDRKIFAEKINEIGEKVAPSAA 127

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 128 VYSVEEALTAAEKIGYPVMARAAFSLGGLGSGFAHNQEQLKS--LAVQALAHSNQLIIDK 185

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 186 SLKGW-KEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTLSNHEYNMLRTT 244

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 245 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 296


>gi|149378451|ref|ZP_01896142.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Marinobacter
           algicola DG893]
 gi|149357263|gb|EDM45794.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Marinobacter
           algicola DG893]
          Length = 667

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ ++++   +  +L +       ++   + +L +  ++  
Sbjct: 151 AENIGYPLMIKASAGGGGRGMRLVEEADELADNLQRARSEAKQAFGDDELILEKAVIEPR 210

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            +             +  ++ + +   A  A 
Sbjct: 211 HIEIQVFADQHGNAVYLGERDCSVQ----RRHQKVVEEAPSPFVTPELREAMGEAAVKAA 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A G  G    +FL D   R  ++LE+N +
Sbjct: 267 LACGYEGAGTVEFLVD-KDRNFYFLEMNTR 295


>gi|148240464|ref|YP_001225851.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. WH 7803]
 gi|147849003|emb|CAK24554.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Synechococcus sp. WH 7803]
          Length = 447

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +++    +          +    G+  L  +       
Sbjct: 149 ALAMGYPVMIKATAGGGGRGMRLVQSADQLETLYKAAQGEAEAAFGNPGLYMEKFIDKPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  D+   +   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDKDLRMRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|54297741|ref|YP_124110.1| hypothetical protein lpp1792 [Legionella pneumophila str. Paris]
 gi|53751526|emb|CAH12944.1| hypothetical protein lpp1792 [Legionella pneumophila str. Paris]
          Length = 654

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +  ++     L  +   +          ++ + L   
Sbjct: 148 AKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDTMIIERLVLNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          PA      + + +   A    ++I 
Sbjct: 208 HVEVQIMADNHGNVVHLFERDCSIQRRHQKIIEEAPAPNLSPVLRQRLAEAACEVARSIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D    K +++E+N +
Sbjct: 268 YRGAGTVEFLVDGED-KFYFMEMNTR 292


>gi|296136808|ref|YP_003644050.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomonas intermedia
           K12]
 gi|294340977|emb|CAZ89372.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Thiomonas sp. 3As]
 gi|295796930|gb|ADG31720.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomonas intermedia
           K12]
          Length = 450

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/213 (18%), Positives = 73/213 (34%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +      +  L  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFAFIGPRPDSIRLMGDKVSAKQAMIRSGVPCVPGSEGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            R        I  P +IK   GG   G+ V+  + ++   +  + S           Y++
Sbjct: 142 PREITRIARSIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTRSEAGAAFGNPAVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
              L    +    L  T             ++          PA  IP  + + +     
Sbjct: 202 KFLLQPRHIEIQVLADTHGNALWLGERDCSMQRRHQKILEEAPAPGIPRRLIERIGARCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 DACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|57790304|gb|AAW56079.1| vancomycin resistance protein A [Enterococcus faecium]
          Length = 205

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 2/128 (1%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF+ LHG  GEDG +Q + EL  IP+    I +SA+ MDK  +  V  + G+      
Sbjct: 14  DVAFSALHGKSGEDGSIQGLFELSGIPFVGCDIQSSAICMDKSLTYIVAKNAGIATPAFW 73

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           ++N+         + P  +KP + GSS G+  +     +   +   S+  +  ++LIEQ 
Sbjct: 74  VINKDDRPVAATFTYPVFVKPARSGSSFGVKKVNSADELDYAI--ESARQYDSKILIEQA 131

Query: 172 VDGIELTC 179
           V G E+ C
Sbjct: 132 VSGCEVGC 139


>gi|328869226|gb|EGG17604.1| methylcrotonyl-CoA carboxylase [Dictyostelium fasciculatum]
          Length = 692

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 62/182 (34%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++++++ +   +  S   +          V+   +   
Sbjct: 177 AAKIGYPVLIKAVLGGGGKGMRIVEREEDLADGIDSSKRESQASFGDSRVLVEKYLVHPR 236

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ +++   A  A +A+G
Sbjct: 237 HVEIQVFADAHGNCVHLFERDCSVQRRHQKIIEEAPAPHLSEELRQKMGSAAVAAAKAVG 296

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+        F++E+N       P +T +            + ++L+ W ++
Sbjct: 297 YVGAGTVEFILS-QDGSFFFMEMNTRLQVEHP-ITEM-----------ITRQDLVEWQLK 343

Query: 295 DA 296
            A
Sbjct: 344 VA 345


>gi|260430982|ref|ZP_05784953.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260414810|gb|EEX08069.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 681

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 52/183 (28%), Gaps = 21/183 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 QQIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L  T             ++  +       P+    +  +      A    +A+G 
Sbjct: 209 IEIQVLCDTHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRRAMGEQAVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|291300639|ref|YP_003511917.1| carbamoyl-phosphate synthase large subunit [Stackebrandtia
           nassauensis DSM 44728]
 gi|290569859|gb|ADD42824.1| carbamoyl-phosphate synthase, large subunit [Stackebrandtia
           nassauensis DSM 44728]
          Length = 1105

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 96/302 (31%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L++ G +VS ++ + +                     V  V+A  +PD    
Sbjct: 29  SGTQACRVLKEEGLRVSLVNSNPATIMTDPEFADATYVEPITPQFVEQVIAAERPDAVLA 88

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +         +LE   +    + + A     D+   K+VV+  G  V  S +
Sbjct: 89  TLGGQTALNTAIALHENGVLERYGVELIGADVGAIQRGEDRQLFKEVVARAGGEVPASAV 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      +    +  P V++P      LG  +      +        + +   ++LIE+
Sbjct: 149 CHTMDEVHKTVAEVGLPVVVRPSFTMGGLGSGMAYTLDDVNRMASAGLAESPTSEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +         ++  +     
Sbjct: 209 SVLGWKEYELELMRDRNDNVVVVCSIENIDPMGVHTGDSVTVAPSMTLTDVEFQRLRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F  +P + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLREVGVDTGGCNIQFAVNPANGRIVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 RL 326



 Score = 36.8 bits (83), Expect = 3.8,   Method: Composition-based stats.
 Identities = 12/61 (19%), Positives = 22/61 (36%), Gaps = 6/61 (9%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           IG RG+    +        ++ LE N +   T     P ++   G    +    ++  AS
Sbjct: 827 IGVRGLLNVQYAL--KDDVLYVLEANPRASRT----VPFVSKATGIPLAKAATRIMMGAS 880

Query: 298 C 298
            
Sbjct: 881 I 881


>gi|254477211|ref|ZP_05090597.1| RimK-like ATP-grasp domain family protein [Ruegeria sp. R11]
 gi|214031454|gb|EEB72289.1| RimK-like ATP-grasp domain family protein [Ruegeria sp. R11]
          Length = 681

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 50/182 (27%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D         S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  +      +    +A+G 
Sbjct: 209 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQSVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGEKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|88608549|ref|YP_506117.1| carbamoyl-phosphate synthase, large subunit [Neorickettsia sennetsu
           str. Miyayama]
 gi|88600718|gb|ABD46186.1| carbamoyl-phosphate synthase, large subunit [Neorickettsia sennetsu
           str. Miyayama]
          Length = 1073

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/303 (13%), Positives = 94/303 (31%), Gaps = 33/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
           SG      L   G+KV  I         D D +  + +               +PD    
Sbjct: 27  SGTQACRILRKCGYKVVLINPNPATIMTDPDTADVVYIEPINIGIIERIIAIERPDKLLP 86

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +  ++           +E+      ++ +A                VP    
Sbjct: 87  TVGGQTALNIAIELFDRGILSRYGVELIGASKRVIENAEKRSVFNRLMGEIGLQVPKNTM 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P +I+P      LG  V          +     ++   ++ +++
Sbjct: 147 VTHVNEIEKAFEFIGVPAIIRPSFTLGGLGGGVATTKFDFFTIINNGLKFSPVSEVQVDE 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +   S+  + I     +     +      +   +   +  + Y+E++  
Sbjct: 207 SVLGWQEFELEVVRDSVGNSIIVCSIENTDPMGVHTGDSVTVSPI-LTLRDEEYQEMRDA 265

Query: 231 AFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           AF     IG   G +   F  +P + ++  +E+N  P ++  S     +   GY   ++ 
Sbjct: 266 AFKVLDCIGVTTGGANVQFALNPENGELRVIEMN--PRVSRSS--ALASKATGYPIAKVA 321

Query: 290 LWM 292
             +
Sbjct: 322 AQL 324



 Score = 43.7 bits (101), Expect = 0.037,   Method: Composition-based stats.
 Identities = 43/299 (14%), Positives = 91/299 (30%), Gaps = 44/299 (14%)

Query: 12  REVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--- 59
             +S         A+++ G++   +         D D S  L  + +  +   +++    
Sbjct: 581 HAIS---------AIKELGYEAIMVNCNPETVSTDYDISDKLYFSPMNVESVLDIVEKES 631

Query: 60  -------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
                        G              + I  T    + +A       S         P
Sbjct: 632 ERGELLGVVLQCGGQTPLKLARAMHENNVRIIGTGFASINTAEDRKSFNSLVAELEMLQP 691

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +L       +   I  P +++P        + +I  D  +   L + +    G  L
Sbjct: 692 ENAIVLAREEIAKNVKKIGFPLIVRPSYVLGGESMQIIYDDAMLEDYLERHTQLFSGSSL 751

Query: 167 LIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L++++ V+ +EL    + D         +   +       +S  ++    P K+  +I +
Sbjct: 752 LLDKFLVNALELDVDAISDGEDVYIAGIMEHIEEAG---VHSGDSAFVFPPQKLSEEILE 808

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
            ++        A+   G     F  D     V+ LE+N +   T     P +A   G  
Sbjct: 809 RIKSCTKKVAIALNVVGFLNIQFAIDGRD--VYVLEVNPRSSRT----IPFVAKALGIP 861


>gi|18204091|gb|AAH21382.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Mus musculus]
          Length = 717

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ ++     L  +       +N    L+ +     
Sbjct: 190 HAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTP 249

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 250 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGINPEVRRKLGEAAVRA 305

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 306 AKAVKYVGAGTVEFIMDSKHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 352

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 353 EWQLRIAAGEK 363


>gi|16331500|ref|NP_442228.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechocystis
           sp. PCC 6803]
 gi|1001156|dbj|BAA10298.1| biotin carboxylase [Synechocystis sp. PCC 6803]
          Length = 448

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQITFIGPSPEAITAMGDKSTAKKTMQKSGVPCVPGSPG 137

Query: 114 NRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              +          I  P +IK   GG   G+ ++++++        +            
Sbjct: 138 LIESEATALKIAAEIGYPVIIKATAGGGGRGMRLVQEEKDFLKLFHAAQGEAGAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++          P+      + K++ 
Sbjct: 198 VYLEKFIEKPRHIEFQILADSHGNVVHLGERDCSIQRRHQKLLEEAPSPFLTPHLRKKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A ++I   G    +FL D  +   +++E+N +
Sbjct: 258 EAAVKAAKSINYVGAGTVEFLVDG-NGNFYFMEMNTR 293


>gi|255011923|ref|ZP_05284049.1| putative biotin carboxylase 2 [Bacteroides fragilis 3_1_12]
          Length = 504

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 84/279 (30%), Gaps = 29/279 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV      SE +    + K    A      +   I    S    L   K          
Sbjct: 29  IAVF-----SEAD---RTAKHVLYA-----DEAYCIGPAASKESYLNIEKIIEVAKSCRA 75

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+           I +            DK+ ++  +    VPV P  
Sbjct: 76  DAIHPG-YGFLSENATFARRCREEGIIFIGPDPETMEAMGDKISARIKMIEASVPVVPGT 134

Query: 112 LVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             N  +++    +      P ++K   GG   G+ +I +   +      + S +      
Sbjct: 135 QENLKSLEEAVELCNQIGYPVMLKASMGGGGKGMRLIHRADEVEEAYTTAKSESLSSFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L      V         ++  +       P   +  ++ ++
Sbjct: 195 DTVYLEKFVEEPHHIEFQILGDKYGNVIHLCERECSVQRRNQKIVEESPSVFVTPELRRD 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +A+   G    +FL D      ++LE+N +
Sbjct: 255 MGEKAVAAAKAVNYVGAGTIEFLVDKHRN-YYFLEMNTR 292


>gi|258572868|ref|XP_002545196.1| pyrABCN protein [Uncinocarpus reesii 1704]
 gi|237905466|gb|EEP79867.1| pyrABCN protein [Uncinocarpus reesii 1704]
          Length = 2282

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 523 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 582

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 583 TFGGQTALQVGIQLKDEFESLGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 642

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 643 TLEEALEVVKDIGFPVIVRAAYALGGLGSGFADNTEQLRD--LCAKAFAASPQVLIEKSM 700

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 701 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 759

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 760 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 809


>gi|224824059|ref|ZP_03697167.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
 gi|224603478|gb|EEG09653.1| pyruvate carboxylase [Lutiella nitroferrum 2002]
          Length = 1145

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 31/235 (13%), Positives = 75/235 (31%), Gaps = 7/235 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +      D      +G   E+           I +            +K+ 
Sbjct: 64  LDID-DIIRIAREANVDAIHPG-YGFLSENPEFAEACATAGIAFIGPRPEVMRQLGNKVS 121

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++++  + GVPV P+                 +  P ++K   GG   G+ V++ +  + 
Sbjct: 122 ARELAQAAGVPVVPATGALPYDLADAQRMAAEVGYPLMLKASWGGGGRGMRVVEHEGELA 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  +           E Y++ +      +    L  +             ++  +   
Sbjct: 182 DAMEVARREAKAAFGNDEVYLEKLVRRARHVEVQILGDSHGNRVHLFERDCSVQRRNQKV 241

Query: 212 THVLPAKIPLDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               PA    +  + E+   A     A+        +FL D  +   +++E+N +
Sbjct: 242 VERAPAPYLSEQQRAELCAAALKLADAVDYTHAGTVEFLMDADTGAFYFIEVNPR 296


>gi|120586901|ref|YP_961246.1| hypothetical protein Dvul_3047 [Desulfovibrio vulgaris subsp.
           vulgaris DP4]
 gi|120564315|gb|ABM30058.1| protein of unknown function DUF201 [Desulfovibrio vulgaris DP4]
          Length = 439

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/298 (14%), Positives = 82/298 (27%), Gaps = 47/298 (15%)

Query: 19  GKACASALEDAGFKV-------SQI--------------DVDRSVGLVLAHLK------- 50
            +  + +L  AGF V         I              D        +  ++       
Sbjct: 14  ARVVSRSLHRAGFTVLAASSTPWPICAYSRYVRRTFTHADPKHDESRFIDDIRRICETQG 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D+   +L             L    +          A   DK R+ +V    G+ V   
Sbjct: 74  VDVLLPIL--RECAVIARHRHLFGPGVRMLLGDAATLADFGDKYRTYEVARDAGLAVPEY 131

Query: 111 ILVNRFTMDSQHLISPPYVI--KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   D   L + P     KP+ G    G+      Q +   +   +     D   +
Sbjct: 132 RRAADLAADPAALAAFPCPCLAKPVWGWGGYGMYECASPQEVAARITAMTDRQRED-YFM 190

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +Q + G  +   ++ +A              Y      S+L  +                
Sbjct: 191 QQRMPGDVVCVAMLCEAGQMHACDTFRIVASYPRRHGQSTLRESVRA---------DAAV 241

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
                    +G  G  ++DF+ DP++   + ++IN +      S+    +   G  F 
Sbjct: 242 DALRTLLAHVGWTGPCQADFIIDPVTGTPYLIDINAR---YWNSLI--QSTARGVDFP 294


>gi|71909549|ref|YP_287136.1| acetyl-CoA carboxylase biotin carboxylase subunit [Dechloromonas
           aromatica RCB]
 gi|71849170|gb|AAZ48666.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Dechloromonas aromatica RCB]
          Length = 452

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + ++   +  +             Y++       
Sbjct: 149 ARAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKQEAGSFFGNPAVYMEKYLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L     +          ++          P   I   +   +      A + IG
Sbjct: 209 HVEIQVLADQHGSAIYLGERDCSMQRRHQKVIEEAPAPHIAPRLINRIGERCAEACRKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|253580794|ref|ZP_04858057.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847864|gb|EES75831.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 449

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 79/277 (28%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHLKP--------------DLAF--------N 56
              A  + G +   +      +S+ + LA  +               D           +
Sbjct: 17  IIRACRNLGIRSVAVYSKEDAKSLHVQLADQRICIGEGPARNSYLNMDRIIAAAENMGAD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+       +   I +            +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSEFVRKCKENGITFIGPDADVIDKMGNKSHARKTMMDAGVPVVPGTKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P +IK   GG   G+ V   +         +   +        
Sbjct: 137 PVYDAETGKKLAEEIGYPVMIKASSGGGGKGMRVAANEDEFEFQFNMAQRESANAFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            Y++        +    +  +   V         ++ +        P+    +  +    
Sbjct: 197 MYIERFVENPRHVEIQIMADSHGNVVALGERDCSVQRNHQKLIEESPSPAIDEETRRKMN 256

Query: 230 -LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A LA + +G       +F+ DP     +++E+N +
Sbjct: 257 EYAVLAAKTVGYTNAGTIEFIVDPKGN-FYFMEMNTR 292


>gi|225684834|gb|EEH23118.1| biotin carboxylase [Paracoccidioides brasiliensis Pb03]
          Length = 665

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGADELQSAVDRATGESPSTKVFVEKAAVGSFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
            V     +      V         ++          P       +  +V   A    + I
Sbjct: 212 EVQ---VIGDGTGEVRHLWERDCSVQRRFQKIVEYSPAMMKDRKLVSKVIESALKMAKMI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + F+LE+N +
Sbjct: 269 KYLSLGTFEFLVSETLSEFFFLEVNPR 295


>gi|224007551|ref|XP_002292735.1| hypothetical protein THAPSDRAFT_24248 [Thalassiosira pseudonana
           CCMP1335]
 gi|220971597|gb|EED89931.1| hypothetical protein THAPSDRAFT_24248 [Thalassiosira pseudonana
           CCMP1335]
          Length = 1535

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 100/308 (32%), Gaps = 40/308 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------------RSVGLVLAHLK 50
           SG  C  AL++ G +V  I+ +                             V  ++   K
Sbjct: 423 SGSQCIKALKEEGIEVILINPNIATVQTSTEKNEVTPGADKVYFLPIRPNVVMDIIHKDK 482

Query: 51  PDLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSC--G 104
           PD     + G    +  V+      L+   +    + I A   + D+    Q +      
Sbjct: 483 PDGIIVSMGGQTALNVGVELWNAGLLQKAGVKVLGTQISAIEATEDREIFSQKLQEIGES 542

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           + +  S       + + + I  P +++       LG      D+ +    L + +++  +
Sbjct: 543 IALSFSANNVEEALVAANKIGYPVLVRAAFALGGLGSGFADNDKELKD--LAAKAFSASN 600

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           Q+LI+Q + G +     +   S D         +F    +                 + Y
Sbjct: 601 QILIDQDLRGWKELEYEVVRDSSDNCITVCNMENFDPLGVHTGDSIVVAPSQTLTNRE-Y 659

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
             +++ A    + +G  G     +  +P S K   +E+N +  ++  S     +   GY 
Sbjct: 660 FMLRKTALKVVRHLGIVGECNIQYALNPKSEKYCIIEVNAR--LSRSS--ALASKATGYP 715

Query: 285 FRELLLWM 292
              +   +
Sbjct: 716 LAYVATKL 723


>gi|241206851|ref|YP_002977947.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
 gi|240860741|gb|ACS58408.1| pyruvate carboxylase [Rhizobium leguminosarum bv. trifolii WSM1325]
          Length = 1154

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 155 MAEGIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQVLGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYVGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|319401564|gb|EFV89774.1| pyruvate carboxylase [Staphylococcus epidermidis FRI909]
          Length = 1149

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 260 DAAIQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|317057780|ref|YP_004106247.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus albus 7]
 gi|315450049|gb|ADU23613.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus albus 7]
          Length = 456

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 45/321 (14%), Positives = 100/321 (31%), Gaps = 57/321 (17%)

Query: 22  CASALEDAGFKVSQIDVDRS---VGLVLAHLKP--------DLAFN-------------- 56
              A  + G K   +        +  ++A            D   N              
Sbjct: 17  VIRAARELGIKTVAVYSTADKNALHAMIADEAICIGGAQSKDSYLNVRAIISACEITGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   I +      +  +  DK ++K+ +   GVPV      
Sbjct: 77  AIHPGFGFLSENPAFARMCEKCGIVFIGPRATSIEMLGDKAQAKETMKENGVPVIMGSDG 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
               + +       +  P ++K   GG   GI +++ +  +   +  +       + + +
Sbjct: 137 AISNIHAAKTLSRDLGYPVLVKASAGGGGRGIRIVRSEDELESQMKAAKQEALACFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +   +   +   ++ D   DV  +            K      +      +  ++ 
Sbjct: 197 VYIEKFIENPKHIEIQILADDYGDVIYLGERDCSMQRRNQKVLEEAPSPAP--FMTQELR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
           + + + A  A +  G R     +FL D  +   +++E+N       P +T         A
Sbjct: 255 ERMGKAAVTAARVCGYRNAGTIEFLVD-KNGDFYFMEMNTRIQVEHP-ITE--------A 304

Query: 280 YAGYSFRELLLWMVEDASCLR 300
             G    +L+   +  AS  R
Sbjct: 305 VTGI---DLVKQQLLIASGER 322


>gi|302392493|ref|YP_003828313.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Acetohalobium arabaticum DSM 5501]
 gi|302204570|gb|ADL13248.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Acetohalobium arabaticum DSM 5501]
          Length = 450

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 21/184 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+   + +  +   +  +SS         E Y++       
Sbjct: 148 ADEIGYPVIVKAAFGGGGRGMRTAQNEDDLKQAIQTASSEAEAAFGNAEVYLEKYIEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          P+    +D+ +E+ + A  A +A+ 
Sbjct: 208 HIEFQIIADEHGNVVHLGERDCSIQRRHQKVIEEAPSPALDVDLREEMGQAAVKAAEAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +FL D  +   +++E+N +              +       G    +L+   +
Sbjct: 268 YANAGTVEFLLDKHNN-YYFIEMNTR----------IQVEHPVTELVTGI---DLIKEQI 313

Query: 294 EDAS 297
             AS
Sbjct: 314 RIAS 317


>gi|218526248|gb|ACK86531.1| carbamoyl-phosphate synthase [Polystoechotes punctatus]
          Length = 718

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 188 TFGGQTALNCGVELEKAGVFEKYGCKILGTPIQSIIETEDRKMFAEKINEIGEKVAPSAA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 248 VYSVEEALNAAEKIGYPVMARAAFSLGGLGSGFAHNQEQLKS--LAIQALAHSNQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 365 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 416


>gi|229515605|ref|ZP_04405064.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae TMA
           21]
 gi|229347374|gb|EEO12334.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae TMA
           21]
          Length = 393

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 81/302 (26%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L      D  R                       
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLT-MNREDIRRLAAEELGLPTSAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|95929431|ref|ZP_01312174.1| pyruvate carboxylase [Desulfuromonas acetoxidans DSM 684]
 gi|95134547|gb|EAT16203.1| pyruvate carboxylase [Desulfuromonas acetoxidans DSM 684]
          Length = 1160

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 45/147 (30%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P ++K   GG   G+ V +    +   L  ++S           +++      
Sbjct: 164 FAKGCGYPIMVKAASGGGGRGMRVARNKDELLEGLKSAASEAQAAFGDGTVFLEKFIENP 223

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    +  +   +         ++        + P+     +  +EV   A      +
Sbjct: 224 KHIEVQIMGDSHGNIVHYFERDCSIQRRHQKVIELAPSPSLSQEKREEVCSHAMKIANEV 283

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D    K +++E N +
Sbjct: 284 GYLNAGTVEFLMDNE-GKFYFIETNPR 309


>gi|322508781|gb|ADX04235.1| accC [Acinetobacter baumannii 1656-2]
          Length = 456

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +       L    +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILQACVHACQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|190894441|ref|YP_001984734.1| putative urea amidolyase [Rhizobium etli CIAT 652]
 gi|190700102|gb|ACE94184.1| putative urea amidolyase protein [Rhizobium etli CIAT 652]
          Length = 1179

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 56/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ +    +S+                    Y++       
Sbjct: 147 AEAIGYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARVYIERFVADAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA          + + A     ++ 
Sbjct: 207 HVEVQIFGDGRGNVIALGERDCSLQRRNQKVVEETPAPGLSAATRGRLHKAAVDLGASVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DPL  + ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPLREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            ++
Sbjct: 315 QSA 317


>gi|109899235|ref|YP_662490.1| carbamoyl-phosphate synthase L chain, ATP-binding
           [Pseudoalteromonas atlantica T6c]
 gi|109701516|gb|ABG41436.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudoalteromonas
           atlantica T6c]
          Length = 675

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 84/286 (29%), Gaps = 35/286 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LH---GNFGEDGLVQAILELLEIPYT 80
           +   I    S    L   K D             +H   G   E+           I + 
Sbjct: 47  EAIHIGPSPSNQSYL---KVDKVLAAAKATGADAIHPGYGFLSENAEFAKACADNNIIFV 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGG 136
              + A      K  +K ++    VP+ P    +             +  P ++K   GG
Sbjct: 104 GPPVEAIDAMGSKSAAKHIMQQANVPLVPGYHGDDQSPALIKKHADDMGYPVLLKAAAGG 163

Query: 137 SSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              G+  +  +      L        SS+N    L+ +       +   V  D   +   
Sbjct: 164 GGKGMRQVWSEDEFDDALAAAKREAMSSFNDDIMLVEKYLTQPRHVEVQVFCDHHGNGVH 223

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           I            K         +P     ++   +   A  A QAI   G    +FL D
Sbjct: 224 IFERDCSVQRRHQKVVEEAPAFKMPP----ELRVAMGDAALKAAQAINYVGAGTVEFLLD 279

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
                 +++E+N +  +       EM      S ++L+ W +  A+
Sbjct: 280 T-DGSFYFMEMNTR--LQVEHPVSEM-----ISGQDLVEWQLRVAA 317


>gi|186685989|ref|YP_001869185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc
           punctiforme PCC 73102]
 gi|186468441|gb|ACC84242.1| acetyl-CoA carboxylase, biotin carboxylase [Nostoc punctiforme PCC
           73102]
          Length = 447

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 82/259 (31%), Gaps = 30/259 (11%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHHIAFIGPTPEAIKLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQL 166
            +      +     I  P +IK   GG   G+ +++ +     + L     +    G+  
Sbjct: 138 LVESEEEGLKFAKEIGYPVMIKATAGGGGRGMRLVRSEDEFVKLFLAAQGEAGAAFGNSG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +              A        +   +      + +           +  D+ ++
Sbjct: 198 VYIEKFIERPRHIEFQILADNYG--NVIHLGERDCSIQRRNQKLLEESPSPALDEDLREK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
           + + A  A Q I   G    +FL D  S K +++E+N       P         EM    
Sbjct: 256 MGQAAVKAAQFINYSGAGTIEFLLD-RSGKFYFMEMNTRIQVEHP-------VTEM--VT 305

Query: 282 GYSFRELLLWMVEDASCLR 300
           G    +L++  +  A   R
Sbjct: 306 GI---DLVVEQIRIAQGER 321


>gi|323449254|gb|EGB05144.1| hypothetical protein AURANDRAFT_38679 [Aureococcus anophagefferens]
          Length = 1514

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 39/305 (12%), Positives = 85/305 (27%), Gaps = 34/305 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD----------------------RSVGLVLAHL-KPDLA 54
           SG     AL + G +V  I+ +                       +V ++L      D  
Sbjct: 444 SGSQAIKALREEGIEVVLINPNIATSKVANVACADRVYLLPVTAANVRMILDKESDIDGI 503

Query: 55  FNVLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              + G    +  ++             +  T+   + S    +    K    +  + + 
Sbjct: 504 IVSMGGQTALNVGIELWANEDLQKRDIRVLGTNIDAIISTEDREIFSGKLREINETLALS 563

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +++ H I  P +++       LG    + D  +      +          I
Sbjct: 564 YPACTVDEALEAAHKIGYPVLVRAAFTLGGLGSGFAENDAELIDLAKNALEGATSTTKQI 623

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
               D                       +      L   + +S  V P++      Y ++
Sbjct: 624 LIDQDLRGWKEVEYEVVRDVRDNCITVCNMENFDPLGVHTGDSIVVAPSQTLSNREYFKL 683

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +  A    + IG  G     +  DP + K   +E+N +  ++  S     +   GY    
Sbjct: 684 RSTAIKVIRHIGIVGECNIQYALDPHTEKYCIIEVNAR--LSRSS--ALASKATGYPLAY 739

Query: 288 LLLWM 292
           +   +
Sbjct: 740 VATKL 744


>gi|302123161|gb|ADK93168.1| CAD [Physocephala marginata]
          Length = 927

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 345 SGSQAIKALKEEQIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKSERPNGVLL 404

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 405 TFGGQTALNCGVELERAGVFSKYNVEILGTPIRSIIETEDRKIFAERVNEIGEKVAPSEA 464

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + +   +  P + +       LG      +  +    L   + ++ +QL+I++
Sbjct: 465 VCSVKEALKAAERLGYPVMARAAFSLGGLGSGFASNESELET--LAHQALSYSNQLIIDK 522

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 523 SLKGW-KEVEYEVVRDAHDNCITVCNMENVDPLGIHTGESIVIAPSQTLSNKEYNMLRTT 581

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 582 AIKMIRHFGVVGECNIQYALSPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 637

Query: 291 WM 292
            +
Sbjct: 638 KL 639


>gi|157374112|ref|YP_001472712.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella sediminis
           HAW-EB3]
 gi|157316486|gb|ABV35584.1| Phosphoribosylaminoimidazole carboxylase [Shewanella sediminis
           HAW-EB3]
          Length = 391

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 77/268 (28%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  ++   +P L    +
Sbjct: 22  GKEVAIELQRMGVEVIGVDRYPNAPAMQVAHRFHVINMLDGDALSNIIEQEQPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P   +  L       +  + + +                  
Sbjct: 82  EAIATQTLVEMEAEGVNIVPTAKATKLTMDREGIRRLAAETLGLPT-SPYFFCDTQTEFE 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  VIK+   +      + +   G        V+G    
Sbjct: 141 LAIENIGMPCVVKPVMSSSGKGQSVIKEAGQVLSA--WNYAQEGGRAGGGRVIVEGFVSF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++               +       S    P  +   +  + Q +     +A+
Sbjct: 199 DYEITLLTISAVNGIHFCDPIGHRQEDGDYRESWQ--PQAMSPQVLAKSQEIGRKVVEAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +        +V++ E++ +P
Sbjct: 257 GGYGLFGVELFI--KGDEVYFSEVSPRP 282


>gi|86450099|gb|ABC96238.1| carbamoylphosphate synthetase [Trichoclinocera sp. JKM-2006]
          Length = 1290

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLDYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      ++     V    +
Sbjct: 429 TFGGQTALNCGVELDRAGIFSKYNVKIMGTPIQSIIETEDRKIFADRIAEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 489 VYSVAEALQAAEVLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 547 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 606 ALKVIRHFGVIGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|50121402|ref|YP_050569.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           atrosepticum SCRI1043]
 gi|81827101|sp|Q6D4B6|PURT_ERWCT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|49611928|emb|CAG75377.1| phosphoribosylglycinamide formyltransferase 2 [Pectobacterium
           atrosepticum SCRI1043]
          Length = 392

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 32/282 (11%), Positives = 79/282 (28%), Gaps = 31/282 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D      L    +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGDALKALVEAERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVTLENQGHHVVPCAEATRLTMNREGIRRLAAETLGVPT-STYRFADSEERFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-LQSSSWNHGDQLLIEQYVDGIEL 177
            +   I  P ++KP+   S  G  +I+  + +             G   +I + +   + 
Sbjct: 143 QAVEAIGYPCIVKPVMSSSGKGQSLIRSAEQLAQAWVYAQQGGRAGGGRVIVEGLVNFDF 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   ++D      P                    P ++     +  Q++A    +A
Sbjct: 203 EITLLTIHAVDGIHFCAPIGHRQE-----DGDYRESWQPQRMSALAQERAQKMASDVVKA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           +G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 258 LGGYGLFGVELFVC--GDEVIFSEVSPRP--HDTGMVTMISQ 295


>gi|226425239|gb|ACO53619.1| biotin carboxylase 4 [Arachis hypogaea]
          Length = 540

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLHST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|310790816|gb|EFQ26349.1| carbamoyl-phosphate synthase [Glomerella graminicola M1.001]
          Length = 1167

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 42/309 (13%), Positives = 92/309 (29%), Gaps = 43/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G K   I+ +                       V  V+   KPD  F 
Sbjct: 113 SGSQALKALKEEGVKSVLINPNIATIQTNHSLADEVYYLPVTPEYVTYVIEKEKPDGIFL 172

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D            +    +
Sbjct: 173 SFGGQTALNLGVQMQRMGLFEKYGVKVLGTSVKTLETSEDRDLFARALDEIDIPIAKSIA 232

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P +++       LG       + +    + + S     Q+L+E+
Sbjct: 233 VGTVEEALDAAEKVGYPIIVRAAYALGGLGSGFANNQEELRN--MAARSLTLSPQILVEK 290

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +F      ++  +        +  + Y  ++  
Sbjct: 291 SLKGWKELEYEVVRDANNNCITVCNMENFDP-LGIHTGDSIVVAPSQTLSDEEYHMLRSA 349

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    + +G  G     +   P       +E+N +  ++  S        +P     A  
Sbjct: 350 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSSALASKATGYPLAYTAAKI 407

Query: 282 --GYSFREL 288
             GYS  EL
Sbjct: 408 GLGYSLPEL 416


>gi|298291314|ref|YP_003693253.1| acetyl-CoA carboxylase, biotin carboxylase [Starkeya novella DSM
           506]
 gi|296927825|gb|ADH88634.1| acetyl-CoA carboxylase, biotin carboxylase [Starkeya novella DSM
           506]
          Length = 450

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 34/212 (16%), Positives = 69/212 (32%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     IL    + +         +  DK+ +K+     G+P  P     +  +
Sbjct: 82  YGFLAENARFAEILIDHGVQFIGPKPEHIRIMGDKIEAKKTAKRLGIPCVPGSDGGVSSD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   G+ V + +Q +   L  + S           Y++ 
Sbjct: 142 EEAAKVAREIGFPVLIKAAAGGGGRGMKVARSEQELSSALSTARSEARAAFGDDAVYIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
              T   +    L   +            L+          P   I  +  K +      
Sbjct: 202 YLGTPRHIEIQVLGDGKGNAIHLGERDCSLQRRHQKVWEEAPSPIITPEQRKRIGGTVAQ 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +   G    +FL+   + + +++E+N +
Sbjct: 262 AMRDLKYLGAGTIEFLY--ENGEFYFIEMNTR 291


>gi|257453351|ref|ZP_05618650.1| carbamoyl phosphate synthase large subunit [Fusobacterium sp.
           3_1_5R]
 gi|317059882|ref|ZP_07924367.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           3_1_5R]
 gi|313685558|gb|EFS22393.1| carbamoyl-phosphate synthase subunit large [Fusobacterium sp.
           3_1_5R]
          Length = 176

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 26/161 (16%), Positives = 65/161 (40%), Gaps = 12/161 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +++P       G+ +   + ++   L  S S +    +LI++Y++GIEL   
Sbjct: 5   ANEVGYPVLVRPSYVLGGQGMEICHDEINLVKYLEASFSRDASSPVLIDKYLNGIELEVD 64

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            + D    +     P    +       S +S  + P +       +++  +     +A+ 
Sbjct: 65  AICDGEDVLI----PGVMEHLERAGVHSGDSITIYPQQNLYAGTEEQILEITTKIARALK 120

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFP 275
            +G+    F+      +++ +E+N       P ++ +S  P
Sbjct: 121 VKGMMNIQFI--AYQNELYVIEVNPRSSRTVPYISKISGLP 159


>gi|218526236|gb|ACK86525.1| carbamoyl-phosphate synthase [Osmylops armatus]
          Length = 717

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 132 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPKYVEQVIRSERPGGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G       + E        + I +   + D+    + ++     V    +
Sbjct: 192 TFGGQTALNCGVQLEKAGVFEKYGCKILGTPIQSIIETEDRKMFAEKINQIGENVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 252 VYSVEEALDAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLRS--LATQALAHSNQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AINVIRHFGVIGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|21672998|ref|NP_661063.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium tepidum TLS]
 gi|21646061|gb|AAM71405.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium tepidum TLS]
          Length = 447

 Score = 49.1 bits (115), Expect = 8e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ V+ ++  +  +L  + S           Y++       
Sbjct: 148 AKKIGYPVIIKPTAGGGGKGMRVVHEESQLEKNLKTAQSEAGMAFGNSGVYIEKFLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P+ +  + +  ++   A  A +AI 
Sbjct: 208 HIEIQILADQHGNVVHLGERDCTVQRRHQKLIEETPSPVVDEALRTKMGEAAVAAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDKHKN-FYFMEMNTR 292


>gi|319892512|ref|YP_004149387.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|317162208|gb|ADV05751.1| Biotin carboxylase of acetyl-CoA carboxylase [Staphylococcus
           pseudintermedius HKU10-03]
 gi|323464386|gb|ADX76539.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           pseudintermedius ED99]
          Length = 451

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 1/156 (0%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +IK   GG   GI + + ++ +      +             
Sbjct: 137 VHTIEDAIQTANSIGYPVIIKATAGGGGKGIRIARNEEELINGYKMTQQEAETAFGNGGL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-R 229
           Y++        +    L      V         ++          P+ I  +  ++    
Sbjct: 197 YLEKFIENFRHIEIQILGDEHGNVIHLGERDCTIQRRMQKLVEESPSPILTEEKRKEMGD 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A +A+        +F++D    + +++E+N +
Sbjct: 257 AAVRAAKAVNYFNAGTIEFIYDLDEDQFYFMEMNTR 292


>gi|212550854|ref|YP_002309171.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549092|dbj|BAG83760.1| carbamoyl-phosphate synthase [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 1449

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   KP+    
Sbjct: 404 SGSQALKALKEEGIYTVLINPNIATVQTSEGVADKIYFLPVTPFFVEKVIEKEKPEGILL 463

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +         I E   +    + + +   + D+    + ++   V    SI 
Sbjct: 464 SFGGQTALNCGVFLHQSGIFEKYNVNVLGTTVQSIIDTEDRELFVKKLNQINVKSIKSIA 523

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +    +   +  P +++       LG       + +    L   ++N+ +QLLIE+
Sbjct: 524 VGTIKDARRAAEELGYPIIVRAAYALGGLGSGFCNNQEQLQS--LAERAFNYSNQLLIEK 581

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 582 SLKGW-KEIEYEVVRDQYDNCITVCNMENFDPLGIHTGESIVVAPSQTLTNQEYHKLREL 640

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FD  S     +E+N +  ++  S     +   GY   
Sbjct: 641 SIRIVRHIGIIGECNVQYAFDTNSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 692


>gi|169633745|ref|YP_001707481.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii SDF]
 gi|169795643|ref|YP_001713436.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii AYE]
 gi|184158457|ref|YP_001846796.1| biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|213158412|ref|YP_002319710.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB0057]
 gi|215483132|ref|YP_002325339.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB307-0294]
 gi|239501582|ref|ZP_04660892.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB900]
 gi|260554704|ref|ZP_05826925.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|301512237|ref|ZP_07237474.1| biotin carboxylase [Acinetobacter baumannii AB058]
 gi|301597292|ref|ZP_07242300.1| biotin carboxylase [Acinetobacter baumannii AB059]
 gi|332852459|ref|ZP_08434198.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013150]
 gi|332871339|ref|ZP_08439888.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013113]
 gi|332873950|ref|ZP_08441890.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6014059]
 gi|169148570|emb|CAM86436.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii AYE]
 gi|169152537|emb|CAP01515.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii]
 gi|183210051|gb|ACC57449.1| Biotin carboxylase [Acinetobacter baumannii ACICU]
 gi|193077596|gb|ABO12438.2| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii ATCC 17978]
 gi|213057572|gb|ACJ42474.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB0057]
 gi|213987535|gb|ACJ57834.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           AB307-0294]
 gi|260411246|gb|EEX04543.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter baumannii
           ATCC 19606]
 gi|323518384|gb|ADX92765.1| biotin carboxylase [Acinetobacter baumannii TCDC-AB0715]
 gi|332729161|gb|EGJ60504.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013150]
 gi|332731623|gb|EGJ62909.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6013113]
 gi|332737936|gb|EGJ68823.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Acinetobacter
           baumannii 6014059]
          Length = 456

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +       L    +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILQACVHACQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|17402669|gb|AAL38923.1| acetyl-CoA carboxylase [Lolium multiflorum]
 gi|17402675|gb|AAL38926.1| acetyl-CoA carboxylase [Lolium multiflorum]
          Length = 280

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 136 CQMIGYPAMIKASWGGGGKGIRKVNNDDEVKALFKQVQGEVPGSPIFIMRLASQSRHLEV 195

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++       A    +A+G
Sbjct: 196 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELRA----SARRLAKAVG 251

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 252 YVGAATVEYLYSMETGEYYFLELNPR 277


>gi|33598529|ref|NP_886172.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella
           parapertussis 12822]
 gi|81836486|sp|Q7W3K5|PURT_BORPA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33574658|emb|CAE39310.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella
           parapertussis]
          Length = 406

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 77/284 (27%), Gaps = 32/284 (11%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D   +  V+   +P +    +
Sbjct: 29  GKEVVIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
                +  +       + +  T      +       R               +   +   
Sbjct: 89  EAIATDLLVALEDEGAVRVTPTARAAHLTMNREGIHRLAAETLGLPTSPYRFVDTEQALR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--- 174
                 I  P VIKP+   S  G  +I+    I        +   G        V+G   
Sbjct: 149 EAIDGGIGYPCVIKPVMSSSGKGQSIIRSADDIAAA--WRYAQEGGRVGAGRVIVEGFIE 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   +       V +        +          P  +     +  + +A   
Sbjct: 207 FDYEITLLTVRARGADGQIVTQFCEPIGHRQVDGDYVESWQPHPMSPAALQRSREIALAV 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSIF 274
              +G  GI   +        +V++ E++ +P   GM T +S  
Sbjct: 267 TGDLGGLGIFGVELFV--AGDQVWFSEVSPRPHDTGMVTLISQV 308


>gi|326330385|ref|ZP_08196695.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325951922|gb|EGD43952.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 580

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 53/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +++    +   +  +             +++ + +   
Sbjct: 65  AGDIGFPLLVKAAYGGGGRGMRIVESADELESTVAAARREAVSAFGNGAVFLERLVIRPR 124

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +       ++  V         ++          P   +  ++  E+   A  A +AIG
Sbjct: 125 HIEVQVFADSQGQVVHLFERECSIQRRYQKIIEEAPSPVVDEELRSELGAAAVAAAKAIG 184

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+ DP S + ++LE+N +
Sbjct: 185 YVGAGTVEFVMDP-SGEFYFLEVNTR 209


>gi|309362726|emb|CAP27456.2| hypothetical protein CBG_07699 [Caenorhabditis briggsae AF16]
          Length = 2257

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
           H I  P +IK  +GG   GI    K +       +         + + + V+    +   
Sbjct: 341 HNIGFPLMIKASEGGGGKGIRKCTKLEDFKSMFEEVGLEVSNSPIFLMKCVENARHIEVQ 400

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +V  +            K        V P+    +  K +Q  A    + +G 
Sbjct: 401 LIADRYENVISVFTRDCSIQRRCQKIIEEAPACVAPS----ETRKRMQEDAVRIARYVGY 456

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+ P     F+LE+N +
Sbjct: 457 ESAGTVEYLYLPEDDTYFFLELNPR 481


>gi|303249227|ref|ZP_07335463.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           fructosovorans JJ]
 gi|302489367|gb|EFL49319.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           fructosovorans JJ]
          Length = 1231

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 28/283 (9%), Positives = 81/283 (28%), Gaps = 36/283 (12%)

Query: 17  SSGKACASALEDAGF-----KVSQIDVDR--------------------SVGLVLAHLKP 51
            S +    ++ +         V+ +D+                       +  ++   K 
Sbjct: 25  ISARRVLRSIRERLHAIPVLTVTDVDMTSPATAGAHELITLGADPRAYLDIDAIIKKAKA 84

Query: 52  DLAFNVLHGNFGEDGLVQAILELL------EIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                 +H  +G     +             I  +   +      ++  +    +    V
Sbjct: 85  HGVV-AIHPGWGFASEDEEFPRKCAEAGIIFIGSSAEAMKKLGNKVEVRKIAMDLGVPVV 143

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
           P     +      +    I  P ++K   GG   GI  I  +  +     ++S+      
Sbjct: 144 PGSEGSVSIPEAREIAAKIGFPIMLKAEGGGGGRGIYEIYSEAQLESAFSKASAMAQASF 203

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LD 222
                +V+ +  +   +           +   D     ++ +      + P+       +
Sbjct: 204 GNPRLFVEKLLTSVRHIEIQVAADKHGNIFAFDERDCSVQRNHQKLVEITPSPWRGMTDE 263

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + + ++  A    +  G   ++  +FL D    + + +E+N +
Sbjct: 264 LRQRLKDYAERLVRETGYYSLATVEFLVDA-DGEPYLIEVNTR 305


>gi|307731029|ref|YP_003908253.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1003]
 gi|307585564|gb|ADN58962.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp.
           CCGE1003]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSFKNAIWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|227327934|ref|ZP_03831958.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           carotovorum subsp. carotovorum WPP14]
          Length = 447

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLDGDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQILADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITDELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGDRCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|170695333|ref|ZP_02886479.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia graminis
           C4D1M]
 gi|170139733|gb|EDT07915.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia graminis
           C4D1M]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|171463027|ref|YP_001797140.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
 gi|171192565|gb|ACB43526.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. necessarius STIR1]
          Length = 454

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +            L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSTADKEAKYVRLADEAVCIGPAPSSLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +K+ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFAFIGPTAASIHLMGDKVSAKRAMIKAGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  + +   +  P +IK   GG   G+ V+  +  +   +  +        
Sbjct: 134 SEGAPPDNPKEIIAAAKKVGYPVIIKAAGGGGGRGMRVVHTEAHLINAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
              E Y++        +    L  T             ++          PA  I   + 
Sbjct: 194 GNPEVYMEKFLEKPRHVEIQVLADTHGNAIWLGERDCSMQRRHQKVIEEAPAPGIDRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++      A + IG RG    +FL+   + + F++E+N +
Sbjct: 254 AKIGERCAEACRKIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|268581901|ref|XP_002645934.1| Hypothetical protein CBG07699 [Caenorhabditis briggsae]
          Length = 2047

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/145 (17%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCG 180
           H I  P +IK  +GG   GI    K +       +         + + + V+    +   
Sbjct: 233 HNIGFPLMIKASEGGGGKGIRKCTKLEDFKSMFEEVGLEVSNSPIFLMKCVENARHIEVQ 292

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +V  +            K        V P+    +  K +Q  A    + +G 
Sbjct: 293 LIADRYENVISVFTRDCSIQRRCQKIIEEAPACVAPS----ETRKRMQEDAVRIARYVGY 348

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+ P     F+LE+N +
Sbjct: 349 ESAGTVEYLYLPEDDTYFFLELNPR 373


>gi|329957329|ref|ZP_08297849.1| carbamoyl-phosphate synthase, large subunit [Bacteroides clarus YIT
           12056]
 gi|328523042|gb|EGF50145.1| carbamoyl-phosphate synthase, large subunit [Bacteroides clarus YIT
           12056]
          Length = 1086

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDR-SVGLVLAHLKPDLAFN 56
           SG     AL + G                     KV  + V    V  ++   +PD    
Sbjct: 38  SGSQALKALREEGVGSVLVNPNIATIQTSEGIADKVYFLPVTPYFVEEIIKKEQPDGILL 97

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 98  AFGGQTALNCGTELYLNGTLQKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 157

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 158 VESMEDALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFVK--LAESSFTFSKQILVEE 215

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 216 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 274

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 275 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 330

Query: 291 WM 292
            +
Sbjct: 331 KI 332


>gi|321249824|ref|XP_003191587.1| aspartate carbamoyltransferase [Cryptococcus gattii WM276]
 gi|317458054|gb|ADV19800.1| Aspartate carbamoyltransferase, putative [Cryptococcus gattii
           WM276]
          Length = 2333

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G     ++ +                       V  ++ H KPD  + 
Sbjct: 579 SGSQAIKALKQEGIYTILVNPNIATIQTSKGLADKVYFLPVTPEFVLKIIKHEKPDGIYC 638

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G    +  ++   E  ++     G     +   + R     +   +        + +
Sbjct: 639 TFGGQTALNVGIKLKDEFSKLGVKVLGTPIETIITTEDREMFARAMEEIGEKCAESATAV 698

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                +++   I  P +++       LG    K  + +    L   ++    Q+L+E+ +
Sbjct: 699 NLTEAIEAAERIGFPVIVRAAYALGGLGSGFAKDVEQLTE--LCGKAFATSPQVLVEKSM 756

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 757 KGW-KEIEYEVVRDCRNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDADYNMLRTTAV 815

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 816 NVIRHLGVVGECNIQYALNPYSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 865


>gi|285016970|ref|YP_003374681.1| acetyl-CoA carboxylase subunit A [Xanthomonas albilineans GPE PC73]
 gi|283472188|emb|CBA14695.1| probable biotin carboxylase, acetyl-coa carboxylase subunit a
           protein [Xanthomonas albilineans]
          Length = 669

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 62/217 (28%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+           I +      A     +K  +K ++ +  VP+ P    
Sbjct: 84  AIHPGYGFLSENATFAEHCARRGIVFIGPPPAAIRAMGNKSAAKALMQAAAVPLTPGYHG 143

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                 F       I  P +IK   GG   G+  +  +      L+              
Sbjct: 144 ERQEMEFLRTQADAIGYPVLIKASAGGGGKGMRRVDHNADFATALVACQREAQAAFGNAH 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
             V+   L    +                     ++          PA    +  +    
Sbjct: 204 VLVEKYVLRPRHIEIQVFGDQHGEFVYLFERDCSVQRRHQKVLEEAPAPGMREEQRAAMG 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A +A+G  G    +F+  P     +++E+N +
Sbjct: 264 QAAVEAARAVGYVGAGTVEFIVAP-DGAFYFMEMNTR 299


>gi|282897930|ref|ZP_06305925.1| Acetyl-CoA carboxylase, biotin carboxylase [Raphidiopsis brookii
           D9]
 gi|281197074|gb|EFA71975.1| Acetyl-CoA carboxylase, biotin carboxylase [Raphidiopsis brookii
           D9]
          Length = 335

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P +IK   GG   G+ +++ +         +             Y++       
Sbjct: 36  AHQIGYPVMIKATAGGGGRGMRLVRSEDEFIKLFHAAQGEAGAAFGNAGVYIEKFIERPR 95

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+    + + +++   A  A Q I 
Sbjct: 96  HIEFQILGDNYGNVIHLGERDCSIQRRNQKLLEEAPSPALDEDLREKMGHAAVKAAQFIN 155

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S   +++E+N +
Sbjct: 156 YTGAGTVEFLLD-KSGHFYFMEMNTR 180


>gi|261855705|ref|YP_003262988.1| urea carboxylase [Halothiobacillus neapolitanus c2]
 gi|261836174|gb|ACX95941.1| urea carboxylase [Halothiobacillus neapolitanus c2]
          Length = 1208

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/185 (13%), Positives = 55/185 (29%), Gaps = 18/185 (9%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P ++K   GG  +G+     + ++       +            +V+     
Sbjct: 158 HEAERIGYPIMLKSTAGGGGIGLKRCADEPALIDAFEAVAGMGARFFGDGGVFVERFIDH 217

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQA 237
              +        +  V         L+  +       PA       +      A    ++
Sbjct: 218 ARHVEVQIFGDGKGRVVALGERDCSLQRRNQKVIEETPAPNLPAKTRAAMLASAERLGES 277

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           I  +     ++++D    + ++LE+N       P +T            G    +L+ WM
Sbjct: 278 IAYQSAGTVEYIYDAPRDEFYFLEVNTRLQVEHP-ITE--------EVTGV---DLIEWM 325

Query: 293 VEDAS 297
           V  A+
Sbjct: 326 VSLAA 330


>gi|167765424|ref|ZP_02437537.1| hypothetical protein BACSTE_03814 [Bacteroides stercoris ATCC
           43183]
 gi|167697052|gb|EDS13631.1| hypothetical protein BACSTE_03814 [Bacteroides stercoris ATCC
           43183]
          Length = 1075

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDR-SVGLVLAHLKPDLAFN 56
           SG     AL + G                     KV  + V    V  ++   +PD    
Sbjct: 27  SGSQALKALREEGVGSVLVNPNIATIQTSEGIADKVYFLPVTPYFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +   L+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGTLQKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   +++     L  SS+    Q+L+E+
Sbjct: 147 VESMEDALKAAREIGYPVMVRSAYALGGLGSGICPDEEAFVK--LAESSFTFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +  K +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDEQVKMLQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|116254364|ref|YP_770202.1| pyruvate carboxylase [Rhizobium leguminosarum bv. viciae 3841]
 gi|115259012|emb|CAK10121.1| putative pyruvate carboxylase [Rhizobium leguminosarum bv. viciae
           3841]
          Length = 1154

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+  + +  ++ ++           E Y++ +    
Sbjct: 155 MADGIGYPVMLKASWGGGGRGMRAIRDPKDLAREVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQVLGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|228477869|ref|ZP_04062483.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           salivarius SK126]
 gi|228250359|gb|EEK09599.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           salivarius SK126]
          Length = 456

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 90/281 (32%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I       S+  +LA            D   N              
Sbjct: 17  IIRAARELGIQTVAIYSEADKDSLHTMLADEAICIGPAKSTDSYLNMNRVLSAAIVTEAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEVMDKMGDKINARAEMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++  + +  P ++K   GG   GI  +  ++ +      +S      + +G 
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTEEELAPAFESASQEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+        +FL D  + + +++E+N +
Sbjct: 257 S----AAVRAAKAVNYENAGTIEFLLDEKTGQFYFMEMNTR 293


>gi|199600902|emb|CAL63611.1| acetyl-coenzyme A carboxylase [Alopecurus myosuroides]
          Length = 2320

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 313 CQMIGYPAMIKASWGGGGKGIRKVNNDDEVKALFKQVQGEVPGSPIFIMRLASQSRHLEV 372

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 373 QLLCDEYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 428

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 429 YVGAATVEYLYSMETGEYYFLELNPR 454


>gi|199600900|emb|CAL63610.1| acetyl-coenzyme A carboxylase [Alopecurus myosuroides]
          Length = 2320

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 313 CQMIGYPAMIKASWGGGGKGIRKVNNDDEVKALFKQVQGEVPGSPIFIMRLASQSRHLEV 372

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 373 QLLCDEYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 428

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 429 YVGAATVEYLYSMETGEYYFLELNPR 454


>gi|104783238|ref|YP_609736.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           entomophila L48]
 gi|122402140|sp|Q1I5Y3|PURT_PSEE4 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|95112225|emb|CAK16952.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           entomophila L48]
          Length = 393

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 72/268 (26%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFNVVPTARATQLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYS 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++    +        +   G        ++G    
Sbjct: 143 KAVADLGYPCVVKPVMSSSGKGQSLLRSADDLQKA--WDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFEYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMSPKALAESQRVAQAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|20975574|emb|CAC84161.1| acetyl-coenzyme A carboxylase [Alopecurus myosuroides]
          Length = 2320

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 313 CQMIGYPAMIKASWGGGGKGIRKVNNDDEVKALFKQVQGEVPGSPIFIMRLASQSRHLEV 372

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 373 QLLCDEYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 428

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 429 YVGAATVEYLYSMETGEYYFLELNPR 454


>gi|332366438|gb|EGJ44189.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK355]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 86/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +   +   I 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAIGKTLRQKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     A  A Q++G       +FL D    + +++E+N +
Sbjct: 257 E----AAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|332365751|gb|EGJ43509.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1059]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|325686994|gb|EGD29018.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK72]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|323350383|ref|ZP_08086047.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           VMC66]
 gi|322123456|gb|EFX95132.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           VMC66]
 gi|332359173|gb|EGJ36994.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK49]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|293394172|ref|ZP_06638472.1| acetyl-CoA carboxylase [Serratia odorifera DSM 4582]
 gi|291423150|gb|EFE96379.1| acetyl-CoA carboxylase [Serratia odorifera DSM 4582]
          Length = 449

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSAADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 NEMRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|330981079|gb|EGH79182.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. aptata str. DSM 50252]
          Length = 490

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 36/284 (12%), Positives = 89/284 (31%), Gaps = 31/284 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 4   ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPKGVIVQYGGQTP 63

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + I  T    +  A   ++ +      +   P   ++      + +   
Sbjct: 64  LKLARALEAAGVPIIGTSPDAIDRAEDRERFQHMVERLNLRQPPNATVRSEDEAIRAAAK 123

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVM 182
           I  P V++P        + ++ ++  +   L ++   ++   +L++ +    IE+    +
Sbjct: 124 IGYPLVVRPSYVLGGRAMEIVYQEDELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAV 183

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D +  V    +   +       +S  ++  + P  +P  I  E++         +G  G
Sbjct: 184 CDGTDVVIGAIMQHIEQAG---VHSGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVG 240

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +             ++ +E+N +   T     P ++   G S  
Sbjct: 241 LMNVQLALQGED--IYVIEVNPRASRT----VPFVSKCIGVSLA 278


>gi|325696883|gb|EGD38770.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK160]
          Length = 455

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|304310200|ref|YP_003809798.1| hypothetical protein HDN1F_05510 [gamma proteobacterium HdN1]
 gi|301795933|emb|CBL44134.1| conserved hypothetical protein [gamma proteobacterium HdN1]
          Length = 402

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/280 (7%), Positives = 60/280 (21%), Gaps = 38/280 (13%)

Query: 17  SSGKACASALEDAGFKVS-------------------QIDVD------RSVGLV---LAH 48
            S  A   AL     +V                    ++  D        +      +  
Sbjct: 28  RSALAVTRALGQQNLRVVTADCVSPTLAGSSKYSLANRVYPDPYETPLEFLDWFQSEVEQ 87

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + F +           +     + +P+     + +     ++  +       +P  
Sbjct: 88  NSVRMVFPMTEVTTDLVMRHRHRWPNVTLPFADITTIDALADKIRLHQRASELGIAIPPT 147

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +            +  P V+K           +   D+ +   +      +   + + 
Sbjct: 148 HYLDSPEAAQALLPSLQFPVVLK------PYRSRIWLSDRWLATAVQIVHDESEYRRWIA 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
            +                         +     +                +  +      
Sbjct: 202 VEPFKTHPYMVQGFIQGEGQGVFALYNQGQPQFFFAHRRLRERPPSGGVSVWSESALPNP 261

Query: 229 RLAFLAHQAI---GCRGISRSDFLFDPLSRKVFWLEINVQ 265
            L   A   +      G++  +F   P     + +EIN +
Sbjct: 262 ALQHAAETLLTDAKWHGVAMVEFKVAP-DGTPYLMEINTR 300


>gi|288803618|ref|ZP_06409048.1| carbamoyl-phosphate synthase, large subunit [Prevotella
           melaninogenica D18]
 gi|288333858|gb|EFC72303.1| carbamoyl-phosphate synthase, large subunit [Prevotella
           melaninogenica D18]
          Length = 1074

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGVSTVLINPNIATVQTSEGVADQIYFLPVQPYFVERVIEKERPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +L+   +    + + A   + D+    + +    V    S  
Sbjct: 88  SFGGQTALNCGVELDKTGVLKKYNVKVLGTPVKAIMDTEDRELFVERLDEIDVKTIKSEA 147

Query: 113 VNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG      +  +    L   +++   Q+L+E+
Sbjct: 148 CEDIQQARVAAKNLGYPVIVRAAYALGGLGSGFAGNEDELNT--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|254465488|ref|ZP_05078899.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium Y4I]
 gi|206686396|gb|EDZ46878.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium Y4I]
          Length = 681

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 53/182 (29%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L  T             ++  +       P+    +  ++     A    +A+G 
Sbjct: 209 IEIQVLCDTHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEETRKAMGEQAVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|198274201|ref|ZP_03206733.1| hypothetical protein BACPLE_00341 [Bacteroides plebeius DSM 17135]
 gi|198272876|gb|EDY97145.1| hypothetical protein BACPLE_00341 [Bacteroides plebeius DSM 17135]
          Length = 1074

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  ++    PD    
Sbjct: 27  SGSQALKALREEGIRSVLINPNIATIQTSEGIADQVYFLPVTPYFVTEIIKKEHPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G +   + IL+   +    + + A   + D+    + ++   +    S  
Sbjct: 87  AFGGQTALNCGTELYQKGILKEYGVEVLGTSVDAIMYTEDRDLFVKKLNEKSLKTPVSRA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P +I+       LG  +   ++      L  S++    Q+L+E+
Sbjct: 147 VENMKDALEAARTIGYPVMIRSAYALGGLGSGICPDEEKFIE--LAESAFTFSPQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +     V   + +     ++  +        +  +    +Q L
Sbjct: 205 SLKGW-KEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLSEEQVTMLQDL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +   G     + F+  +     +E+N +  ++  S     +   GY    +  
Sbjct: 264 SKQCIRHLNIVGECNIQYAFNAETNDYRIIEVNAR--LSRSS--ALASKATGYPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|170104188|ref|XP_001883308.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
 gi|164641761|gb|EDR06020.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
          Length = 2171

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/316 (12%), Positives = 94/316 (29%), Gaps = 40/316 (12%)

Query: 1   MAVL-MGGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------- 39
           + +L  GG+S     E +    SG     AL++ G     ++ +                
Sbjct: 440 VIILGSGGLSIGQAGEFD---YSGSQAIKALKEEGIYTIMVNPNIATIATSKGLADKVYF 496

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
                  V  ++   KPD  +    G    +  ++   E  E+     G     +   + 
Sbjct: 497 LPVTPEFVRKIIKFEKPDGIYVTFGGQTALNVGIKLKDEFAELGVQVLGTPIETIITTED 556

Query: 95  RSKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           R     +   +    +           + +   I  P +++       LG    + +  +
Sbjct: 557 RQLFASAMEEIGEKCAESCTATNSDDAVAAAKAIGFPVIVRAAYALGGLGSGFAQDEDQL 616

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L   +       L+ +      E+   V+ D   +   +   ++          S+ 
Sbjct: 617 -RALCTKAFATSPQVLVEKSMKGWKEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIV 675

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                   +    Y  ++  A    + +G  G     +  +P S++   +E+N +  ++ 
Sbjct: 676 VAPSQ--TLSDSDYNMLRTTAINVIRHLGVVGECNIQYALNPTSQEYCIIEVNAR--LSR 731

Query: 271 VSIFPEMAAYAGYSFR 286
            S     +   GY   
Sbjct: 732 SS--ALASKATGYPLA 745


>gi|161510967|ref|YP_088980.2| acetyl-CoA carboxylase biotin carboxylase subunit [Mannheimia
           succiniciproducens MBEL55E]
          Length = 448

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 84/282 (29%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNVPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E+    +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVEVSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                            + I  P +IK   GG   G+ V++ D+S+   +  + +     
Sbjct: 133 GSDGPLGTDMVKNKQIANRIGYPVIIKASGGGGGRGMRVVRNDESLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDI 223
                 Y++        +    +  T             ++          P   I  +I
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQKVLEEAPAPGITEEI 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +++ +    A   IG RG    +FL+     K +++E+N +
Sbjct: 253 RRDIGQRCANACIEIGYRGAGTFEFLY--EDGKFYFIEMNTR 292


>gi|161619144|ref|YP_001593031.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella canis
           ATCC 23365]
 gi|161335955|gb|ABX62260.1| propionyl-coenzyme A carboxylase, alpha polypeptide [Brucella canis
           ATCC 23365]
          Length = 667

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/276 (14%), Positives = 86/276 (31%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 61  IVIDK-ILAAIKETGADAVHPG-YGFLSENPRFAEALKAANVTFIGPPVNAIDAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      D    I+     P +IK   GG   G+ +   D+   
Sbjct: 119 SKKLAAEAGVSTVPGHMGLIEDADEAVRIAGSIGYPVMIKASAGGGGKGMRIAWNDEEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 179 EGFQLSRNEAKSSFGDDRIFIEKFVTQPRHIEIQVLGDQHGNVVYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    +A+G       +F+    +R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVALAKAVGYYSAGTVEFIV-YGNRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  AS  +
Sbjct: 293 -----LQVEHPVTELITGI---DLVEEMIRVASGEK 320


>gi|145529862|ref|XP_001450714.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|124418336|emb|CAK83317.1| unnamed protein product [Paramecium tetraurelia]
          Length = 645

 Score = 49.1 bits (115), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 39/246 (15%), Positives = 77/246 (31%), Gaps = 24/246 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +++   L   K  D+A +     +H   G   E+       +  ++ +    
Sbjct: 49  EAYNIGPPQALQSYLRSDKIIDVALSTKSQAIHPGFGFLSENAQFSEDCQKNDLIFVGPS 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK +++   VPV P         +        I  P +IK + GG   
Sbjct: 109 ADAIRKMGSKSESKIIMTDAKVPVVPGYHGETQDPNFLLQEAEKIGFPVLIKAVMGGGGK 168

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++++       L  +           E      +    V                  
Sbjct: 169 GMRIVRQKSEFLEALEGAKR---------EALKSFKDERVLVEKYIEKPRHIEVQIFGIA 219

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K          P+ +   I  ++   A  A +A+        +F+FD  S K ++
Sbjct: 220 QY---KEDIKRVIEEAPSALDEKIRYDIGEKAKAAARAVKYSNAGTVEFIFDLDSSKFYF 276

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 277 MEMNTR 282


>gi|332193730|gb|AEE31851.1| acetyl-CoA carboxylase 2 [Arabidopsis thaliana]
          Length = 2355

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 301 IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 360

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D   +V  +            K        V P     + 
Sbjct: 361 PIFIMKVASQSRHLEAQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 416

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 417 IKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 458


>gi|320031731|gb|EFW13690.1| pyrABCN [Coccidioides posadasii str. Silveira]
          Length = 2284

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G     I+ +                       V  V+ H +PD  + 
Sbjct: 524 SGSQAIKALKQEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 583

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 584 TFGGQTALQVGIQLKDEFEELGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 643

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 644 TLEEAMEVVKGIGFPVIVRAAYALGGLGSGFADNAEQLRD--LCAKAFAASPQVLIEKSM 701

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 702 KGW-KEIEYEVVRDAQNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 760

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 761 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 810


>gi|313118902|gb|ADR32359.1| acetyl-CoA carboxylase [Echinochloa crus-galli]
          Length = 2316

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|313118900|gb|ADR32358.1| acetyl-CoA carboxylase [Echinochloa crus-galli]
          Length = 2316

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|313149758|ref|ZP_07811951.1| pyruvate carboxylase subunit A [Bacteroides fragilis 3_1_12]
 gi|313138525|gb|EFR55885.1| pyruvate carboxylase subunit A [Bacteroides fragilis 3_1_12]
          Length = 506

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/279 (15%), Positives = 84/279 (30%), Gaps = 29/279 (10%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKP--------- 51
           +AV      SE +    + K    A      +   I    S    L   K          
Sbjct: 31  IAVF-----SEAD---RTAKHVLYA-----DEAYCIGPAASKESYLNIEKIIEVAKSCRA 77

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+           I +            DK+ ++  +    VPV P  
Sbjct: 78  DAIHPG-YGFLSENATFARRCREEGIIFIGPDPETMEAMGDKISARIKMIEASVPVVPGT 136

Query: 112 LVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             N  +++    +      P ++K   GG   G+ +I +   +      + S +      
Sbjct: 137 QENLKSLEEAVELCNQIGYPVMLKASMGGGGKGMRLIHRADEVEEAYTTAKSESLSSFGD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L      V         ++  +       P   +  ++ ++
Sbjct: 197 DTVYLEKFVEEPHHIEFQILGDKYGNVIHLCERECSVQRRNQKIVEESPSVFVTPELRRD 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +A+   G    +FL D      ++LE+N +
Sbjct: 257 MGEKAVAAAKAVNYVGAGTIEFLVDKHRN-YYFLEMNTR 294


>gi|307610530|emb|CBX00116.1| hypothetical protein LPW_18611 [Legionella pneumophila 130b]
          Length = 654

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +  ++     L  +   +          ++ + L   
Sbjct: 148 AKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDTMIIERLVLNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          PA      + + +   A    ++I 
Sbjct: 208 HVEVQIMADNHGNVVHLFERDCSIQRRHQKIIEEAPAPNLSPVLRQRLAEAACEVARSIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D    K +++E+N +
Sbjct: 268 YRGAGTVEFLVDGED-KFYFMEMNTR 292


>gi|299533490|ref|ZP_07046870.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
 gi|298718547|gb|EFI59524.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni S44]
          Length = 657

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P ++K + GG   G+ +++  Q +   L  + S         +  V+   +   
Sbjct: 147 AAMIGYPVMVKAVAGGGGRGMRLVESAQQLHAALNSARSEALAGFGNGDLLVERAVMHPR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +           V         ++          P+  + +++ +++   A    +A G
Sbjct: 207 HVEVQVFADGHGHVIHLGERDCSVQRRHQKIIEESPSPAVNVELREQMGNCAVALAKAAG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL     R+ + +E+N +
Sbjct: 267 YVGAGTVEFLV--EGRQFYLMEMNTR 290


>gi|303318191|ref|XP_003069095.1| URA1 protein , putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240108781|gb|EER26950.1| URA1 protein , putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 2303

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G     I+ +                       V  V+ H +PD  + 
Sbjct: 524 SGSQAIKALKQEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 583

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 584 TFGGQTALQVGIQLKDEFEELGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 643

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 644 TLEEAMEVVKGIGFPVIVRAAYALGGLGSGFADNAEQLRD--LCAKAFAASPQVLIEKSM 701

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 702 KGW-KEIEYEVVRDAQNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 760

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 761 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 810


>gi|199600898|emb|CAL63609.1| acetyl-coenzyme A carboxylase [Setaria viridis]
          Length = 2321

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|186488598|ref|NP_174850.3| ACC2 (ACETYL-COA CARBOXYLASE 2); acetyl-CoA carboxylase
           [Arabidopsis thaliana]
          Length = 2356

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 301 IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 360

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D   +V  +            K        V P     + 
Sbjct: 361 PIFIMKVASQSRHLEAQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 416

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 417 IKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 458


>gi|163843454|ref|YP_001627858.1| propionyl-CoA carboxylase, alpha subunit [Brucella suis ATCC 23445]
 gi|163674177|gb|ABY38288.1| Propionyl-CoA carboxylase, alpha subunit [Brucella suis ATCC 23445]
          Length = 667

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   D+        S +           +++       
Sbjct: 148 AGSIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQLSRNEAKSSFGDDRIFIEKFVTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++  +       P+    +  ++     A    +A+G
Sbjct: 208 HIEIQVLGDQHGNVVYLGERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQAVALAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+ D  +R  ++LE+N +              +       G    +L+  M+
Sbjct: 268 YYSAGTVEFIVDG-NRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEEMI 313

Query: 294 EDASCLR 300
             AS  +
Sbjct: 314 RVASGEK 320


>gi|14388188|gb|AAK60339.1| biotin carboxylase [Brassica napus]
          Length = 535

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 152 YGFHSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLKST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L  + S     + +    L +
Sbjct: 212 EEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 272 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|15558947|gb|AAL02056.1|AF294805_1 acetyl-coenzyme A carboxylase [Setaria italica]
          Length = 2321

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|12322479|gb|AAG51252.1|AC025781_4 acetyl-CoA carboxylase, putative; 9984-22276 [Arabidopsis thaliana]
          Length = 2359

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 301 IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 360

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D   +V  +            K        V P     + 
Sbjct: 361 PIFIMKVASQSRHLEAQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 416

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 417 IKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 458


>gi|11869928|gb|AAG40564.1|AF062308_2 acetyl-CoA carboxylase 2 [Arabidopsis thaliana]
          Length = 2375

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 321 IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 380

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D   +V  +            K        V P     + 
Sbjct: 381 PIFIMKVASQSRHLEAQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 436

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 437 IKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 478


>gi|29123370|gb|AAO62903.1| acetyl-coenzyme A carboxylase [Setaria italica]
          Length = 2321

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|29123376|gb|AAO62902.1| acetyl-coenzyme A carboxylase [Setaria italica]
          Length = 2321

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 27/174 (15%), Positives = 58/174 (33%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + I +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFIMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   + + ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGEYYFLELNPR 451


>gi|78188337|ref|YP_378675.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           chlorochromatii CaD3]
 gi|78170536|gb|ABB27632.1| Acetyl-CoA carboxylase, biotin carboxylase [Chlorobium
           chlorochromatii CaD3]
          Length = 447

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ V+ +D  +   L  + S           Y++       
Sbjct: 148 AKKIGYPIIIKPTAGGGGKGMRVVTEDSQLEKALSTARSEAEQAFGNSGVYIEKYLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+    + + +++   A  A +AI 
Sbjct: 208 HVEIQILSDQHGNTIHLGERDCTVQRRHQKLIEETPSPAVDEALREKMGTAAVAAARAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDKHRN-FYFMEMNTR 292


>gi|55736467|gb|AAV60109.1| biotin carboxylase subunit [Streptococcus thermophilus LMG 18311]
 gi|55738352|gb|AAV61993.1| biotin carboxylase subunit [Streptococcus thermophilus CNRZ1066]
 gi|312277792|gb|ADQ62449.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Streptococcus thermophilus
           ND03]
          Length = 461

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I       S+  +LA            D   N              
Sbjct: 22  IIRAARELGIQTVAIYSEADKDSLHTMLADEAICIGPAKSTDSYLNMNRVLSAAIVTEAQ 81

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 82  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++  + +  P ++K   GG   GI  +   + +      +S      + +G 
Sbjct: 142 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 201

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 202 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRHEIG 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+        +FL D  S + +++E+N +
Sbjct: 262 S----AAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNTR 298


>gi|1800112|dbj|BAA07014.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
          Length = 231

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 25/162 (15%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      + S  ++  P +IK   GG   GI  +  D  +     Q      G 
Sbjct: 47  IYKKACVYTTEEAIASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQVQGEVPGS 106

Query: 165 QLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D   +V  +            K        V P     + 
Sbjct: 107 PIFIMKVASQSRHLEAQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPITVAPQ----ET 162

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K++++ A    +++   G +  ++L+   + + ++LE+N +
Sbjct: 163 IKKLEQAARRLAKSVNYVGAATVEYLYSMDTGEYYFLELNPR 204


>gi|121606280|ref|YP_983609.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
 gi|120595249|gb|ABM38688.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas
           naphthalenivorans CJ2]
          Length = 449

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 82/285 (28%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKAVMVYSEADREAKYIKLADEAVCIGPAPSSLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFKFIGPSPESIRLMGDKVSAKQTMLKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                     F       I  P +IK   GG   G+ V+  + ++   +  + +     +
Sbjct: 134 SEGALPADPAFIKRIAKQIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTKAEAGAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +   +   +   ++ D   +   +            K         +P    
Sbjct: 194 GNPEVYMEKFLQNPRHIEIQILADQFKNAVWLGERDCSMQRRHQKVIEEGPAPGIPR--- 250

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + + +      A +  G RG    +FL+     + +++E+N +
Sbjct: 251 -KLIERIGARCVTAVKKFGYRGAGTFEFLY--EDGEFYFIEMNTR 292


>gi|83952245|ref|ZP_00960977.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius nubinhibens
           ISM]
 gi|83837251|gb|EAP76548.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius nubinhibens
           ISM]
          Length = 681

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 23/185 (12%), Positives = 52/185 (28%), Gaps = 21/185 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +   D+        S +           +++        +
Sbjct: 150 EIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCR 241
               L  +             ++  +       P+    +  +      A     A+G  
Sbjct: 210 EIQVLCDSHGNGIYLGERECSIQRRNQKVIEEAPSPFLDEATRRAMGEQAVALAHAVGYA 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D      ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRV 315

Query: 296 ASCLR 300
           A+  +
Sbjct: 316 AAGEK 320


>gi|99081710|ref|YP_613864.1| carbamoyl-phosphate synthase L chain, ATP-binding [Ruegeria sp.
           TM1040]
 gi|99037990|gb|ABF64602.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ruegeria sp.
           TM1040]
          Length = 676

 Score = 48.7 bits (114), Expect = 9e-04,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 21/183 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWTDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  +      +    +A+G 
Sbjct: 209 IEIQVLCDAHGNGVYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQSVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|302671895|ref|YP_003831855.1| hypothetical protein bpr_I2540 [Butyrivibrio proteoclasticus B316]
 gi|302396368|gb|ADL35273.1| hypothetical protein bpr_I2540 [Butyrivibrio proteoclasticus B316]
          Length = 329

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/261 (14%), Positives = 87/261 (33%), Gaps = 25/261 (9%)

Query: 35  QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
              +D+ +G +    K +  F+++                + +    S       S+DK 
Sbjct: 57  PFYIDQILG-ICKKEKINGVFSLIDPELSLLAENMDRFTEIGVTPIVSSYELCETSLDKY 115

Query: 95  RSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  +++   G+P       + +     S   +S P  +KP +G +S+ I  ++  + +  
Sbjct: 116 QMYEMLVKLGIPTAKCYLSIEDFENAMSAGEVSYPVFVKPRRGSASININAVESKEMLIA 175

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                      D L+I++Y+ G E    V  D                        +   
Sbjct: 176 LFHDY------DDLIIQEYMQGQEYGADVYIDMISGKCTSIF----------LKEKIKMR 219

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                K      + +        + +G RG+   D  +D  +   +  E+N + G     
Sbjct: 220 AGETDKSVSVKDERLFEQIVSFVETVGYRGMIDIDLFYDNATDTWYLSEVNPRFG----G 275

Query: 273 IFPEMAAYAGYSFR-ELLLWM 292
            +P  A   G +F  +++  +
Sbjct: 276 GYPH-AYACGVNFPRQIINNL 295


>gi|256848119|ref|ZP_05553563.1| pyruvate carboxylase [Lactobacillus coleohominis 101-4-CHN]
 gi|256715179|gb|EEU30156.1| pyruvate carboxylase [Lactobacillus coleohominis 101-4-CHN]
          Length = 1146

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/235 (15%), Positives = 75/235 (31%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  V      D      +G   E+           I +    +    +  DK+ 
Sbjct: 61  LDMD-DIIRVAKQTGADAIHPG-YGFLAENEEFAEKCAQNGITFIGPTVEQLKIFGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V    G+   P I       +   D  H    P +IK   GG   G+ ++K D+ + 
Sbjct: 119 AKEVAEKNGLQTIPGINEPVKSMQEMADFAHTHGYPIMIKAAMGGGGRGMRIVKDDEDLK 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L      V         ++  +   
Sbjct: 179 TAYNRARSEAKASFGDDELYVEKYLENPKHIEVQILADEHGHVMHLFERDCSVQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+       ++    A     + +  +     +FL    +   +++E+N +
Sbjct: 239 IEFAPSLALDSQRRKEICDAAVRLMKGVHYQNAGTVEFLVTKDN--FYFIEVNPR 291


>gi|226329364|ref|ZP_03804882.1| hypothetical protein PROPEN_03269 [Proteus penneri ATCC 35198]
 gi|225202550|gb|EEG84904.1| hypothetical protein PROPEN_03269 [Proteus penneri ATCC 35198]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKAVAVHSTADRDLKHVLLADETICIGPAASAKSYLNIPAIIAAAEIS 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  GAQAIHPGYGFLSENADFAEQVERSGFIFVGPKAETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                       ++    I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLGNDTAKNIEIAKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSITMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   VM D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVMADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 PEIRKNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|222056576|ref|YP_002538938.1| pyruvate carboxylase [Geobacter sp. FRC-32]
 gi|221565865|gb|ACM21837.1| pyruvate carboxylase [Geobacter sp. FRC-32]
          Length = 1148

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 74/235 (31%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +D  + L L     D      +G   E+       E   I +            DK+ 
Sbjct: 66  LGIDEIIALALKR-DVDAIHPG-YGFLSENAEFAEKCEAAGITFIGPTAEMQRRLGDKVA 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++V    GVPV P     +      +        P +IK   GG   G+ V    + + 
Sbjct: 124 ARKVAMEAGVPVVPGTEEPVEHEEDALIFAKNYGYPIIIKAAAGGGGRGMRVANNRKELI 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L  + S           +++        +    L  +   +         ++      
Sbjct: 184 EGLAAARSEAQASFGNPAVFLERYLENPKHIEVQVLGDSHGNLVHFFERDCSIQRRHQKV 243

Query: 212 THVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+  I  ++ +E+   A      +G R     +FL D      +++E+N +
Sbjct: 244 VEFAPSLCITPEMREELCSAALKIAGHVGYRNAGTVEFLLDQEGN-FYFIEMNPR 297


>gi|161611296|ref|YP_138924.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus LMG 18311]
 gi|161936379|ref|YP_140808.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus CNRZ1066]
          Length = 456

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I       S+  +LA            D   N              
Sbjct: 17  IIRAARELGIQTVAIYSEADKDSLHTMLADEAICIGPAKSTDSYLNMNRVLSAAIVTEAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++  + +  P ++K   GG   GI  +   + +      +S      + +G 
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+        +FL D  S + +++E+N +
Sbjct: 257 S----AAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNTR 293


>gi|91689202|gb|ABE32402.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia xenovorans
           LB400]
          Length = 461

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 20  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 79

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 80  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 139

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 140 SEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 199

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 200 GNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 260 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 298


>gi|119775939|ref|YP_928679.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           amazonensis SB2B]
 gi|171704601|sp|A1S9F3|PURT_SHEAM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|119768439|gb|ABM01010.1| phosphoribosylglycinamide formyltransferase 2 [Shewanella
           amazonensis SB2B]
          Length = 392

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/274 (13%), Positives = 82/274 (29%), Gaps = 32/274 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                       ++  ++A  KP L    +
Sbjct: 22  GKEVAIELQRLGVEVIAVDRYPNAPAMQVAHRSHVINMLDGEALKALIASEKPHLVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + ++                 
Sbjct: 82  EAIATQTLVELEAEGLKVVPTARATRLTMDREGIRRLAAETLALPT-SPYVFCDSLTELQ 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +  +   P V+KP+   S  G  VI+    +      + S    G+  +I +     + 
Sbjct: 141 AALKVTGIPCVVKPVMSSSGKGQSVIRSPGDVQKAWDYAQSGGRAGEGRIIVEGFIDFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++  +++D      P                    P  +        Q +A    Q 
Sbjct: 201 EITLLTISAVDGIHFCAPIGHRQE-----DGDYRESWQPQAMSSLALDRAQHIAREVVQN 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +G  G+   +        +V++ E++ +P   GM
Sbjct: 256 LGGFGLFGVELFI--KGDEVYFSEVSPRPHDTGM 287


>gi|256370683|ref|YP_003108508.1| carbamyl phosphate synthase large subunit [Candidatus Sulcia
           muelleri SMDSEM]
 gi|256009475|gb|ACU52835.1| carbamyl phosphate synthase large subunit [Candidatus Sulcia
           muelleri SMDSEM]
          Length = 1071

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       ++ +                       V  ++   KP   F 
Sbjct: 25  SGTQALKALKEEKIFTILVNPNIATVQTSEKIADKIYSLPITPFFVEKIIEKEKPQGIFI 84

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G +     +L+   +    + I     S D+   +Q++   G+ +  SI 
Sbjct: 85  SFGGQTALNCGIELFKNGVLKKNNVKVLGTPISYIIKSEDRDIFRQMLIKRGINIAKSIA 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++ + I  P +I+       LG    K    +    L S + ++  Q+LIE+
Sbjct: 145 VNSIDEAINASNEIGFPLIIRSAYALGGLGSGFAKNVYELKK--LSSVALSYSSQILIEE 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D         +     +                L+ Y +++ +
Sbjct: 203 SLKGWKEIEYEVVRDSYDNCITVCNMENIDPIGIHTGDSIVVAPSQTLNNLE-YNKLRSI 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    +     G     F     S K   +EIN +  ++  S     +   GY   
Sbjct: 262 SRKIARYFNIIGECNVQFALSNNSEKYNVIEINAR--LSRSS--ALASKATGYPLA 313


>gi|206890940|ref|YP_002248245.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
 gi|206742878|gb|ACI21935.1| acetyl-CoA carboxylase, biotin carboxylase [Thermodesulfovibrio
           yellowstonii DSM 11347]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 86/281 (30%), Gaps = 42/281 (14%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G K   +  +     +   L  +                             
Sbjct: 19  IIRACRELGIKTVAVYSEADRDALHVKLADEAICIGPANPGQSYLNITAILSAADVTDAE 78

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +         +  DK +++Q++   G+PV P    
Sbjct: 79  AIHPGYGFLSENAQFAEACVNSGIVFIGPAPENIKIGGDKAKARQILKRKGIPVVPGSDG 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +  +   +     I  P + K   GG   G+ ++ +++ I      +       + +G+
Sbjct: 139 PVNTDEACIKIVKKIGLPIIFKASAGGGGRGMRIVNEEKDIEQAFFMAQREALAAFGNGE 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + + +     +   ++ D   ++  +            +             +   + 
Sbjct: 199 LYIEKYFPKVRHIEVQILADKQGNIIHLGERDCTIQ----RRHQKLIEEAPSPVLNEKLR 254

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++   A  A +A+  R I   +F+ D      +++EIN +
Sbjct: 255 KKIGEYAVKAAKALKFRNIGTFEFIVDDELN-PYFIEINTR 294


>gi|332187516|ref|ZP_08389253.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. S17]
 gi|332012445|gb|EGI54513.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas sp. S17]
          Length = 450

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  +  +   + Q+ S           Y++       
Sbjct: 150 AAEIGYPVLIKAASGGGGRGMKVVPSEDQLETLMQQAGSEAKAAFGDATVYMEKYLGNPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P   I  +    +  +   A   +G
Sbjct: 210 HIEFQVFGDGNGQAIHLGERDCSLQRRHQKVLEEAPSPIITAEERARMGGVVAKAMADMG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 270 YRGAGTIEFLW--ENGEFYFIEMNTR 293


>gi|328792966|ref|XP_396680.4| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Apis mellifera]
          Length = 688

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/246 (13%), Positives = 70/246 (28%), Gaps = 34/246 (13%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLA-----FNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L   K            +H   G   E+       +   I +    
Sbjct: 77  EAYYIGPAPPSQSYLRQDKIISIAKKSKCQAIHPGYGFLSENAEFAEFCQKENIIFIGPP 136

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSL 139
             A      K  SK +++  G+PV         + +        I  P +IK + GG   
Sbjct: 137 ANAIKNMGIKSTSKNIMTKAGIPVIAGYHGKDQSNEILLLKAKKIGFPLMIKAICGGGGK 196

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++ K+      L  +              ++                      +   
Sbjct: 197 GMRIVLKESEFIEALECAKIECENAFNDSAILLE----------------------QYIN 234

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
               ++       H     I  ++  ++  +A    + +G  G    +F+ D  +   ++
Sbjct: 235 NPRHIEIQVFADKHGNIPGISANLRSDLGTIAIKVAKTVGYIGAGTVEFIMDCNTNNFYF 294

Query: 260 LEINVQ 265
           +E+N +
Sbjct: 295 MEMNTR 300


>gi|307130902|ref|YP_003882918.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya dadantii
           3937]
 gi|306528431|gb|ADM98361.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya dadantii
           3937]
          Length = 392

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++A  +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGEALKQLVAQERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVALEQQGQRVVPCAEATRLTMNREGIRRLAAETLGLPT-SSYRFAADEAAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H +  P ++KP+   S  G  +I+  + +        +   G     +  V+G+   
Sbjct: 143 QAAHELDFPCIVKPVMSSSGKGQSLIRSPEQLDHA--WRYAQEGGRAGGGKVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P ++        + +A    +A+
Sbjct: 201 DFEITLLTIHAVDGLHFCEPIGHRQEDG--DYRESWQPQQMSELALTRAKEIAGNVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFIC--GEEVIFSEVSPRPHDTGM 289


>gi|242373336|ref|ZP_04818910.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W1]
 gi|242348699|gb|EES40301.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W1]
          Length = 1153

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 71  ERIIEVAKRAGVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 129

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     I               P +IK   GG   G+ +++++  +     
Sbjct: 130 AIRANLPVIPGTDGPIESFEAAQQFALEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 189

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +   +  +         ++        V 
Sbjct: 190 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEQGNIIHLYERDCSVQRRHQKVVEVA 249

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+    + + + +   A    + I        +FL      + F++E+N +
Sbjct: 250 PSVGLSESLRERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|161621312|ref|YP_560454.2| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           xenovorans LB400]
 gi|296160498|ref|ZP_06843314.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. Ch1-1]
 gi|295889247|gb|EFG69049.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia sp. Ch1-1]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|251789843|ref|YP_003004564.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya zeae
           Ech1591]
 gi|247538464|gb|ACT07085.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya zeae
           Ech1591]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAH----LKPDLAFNVL 58
           GK  A   +  G +V  +D                ++   G  L       +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDGDALKQLVALERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVALEQQGQRVVPCAEATRLTMNREGIRRLAAETLGLPT-SSYRFAADETAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H +  P ++KP+   S  G  +I+  + +        +   G     +  V+G+   
Sbjct: 143 QAAHELGFPCIVKPVMSSSGKGQSLIRSPEQLDRA--WRYAQEGGRAGGGKVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P ++        + +A    +A+
Sbjct: 201 DFEITLLTIHAIDGLHFCEPIGHRQEDG--DYRESWQPQQMSELALTRAKEIAGNVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFIC--GDEVIFSEVSPRPHDTGM 289


>gi|218526230|gb|ACK86522.1| carbamoyl-phosphate synthase [Nymphes myrmeleonoides]
          Length = 681

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 90  SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPKYVEQVIRSERPGGVLL 149

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G       + E        + I +   + D+    + ++     V    +
Sbjct: 150 TFGGQTALNCGVQLEKAGVFEKYGCKILGTPIQSIIETEDRKMFAEKINEIGENVAPSAA 209

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 210 VYSVEEALDAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLRS--LATQALAHSNQLIIDK 267

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 268 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 326

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 327 AINVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 382

Query: 291 WM 292
            +
Sbjct: 383 KL 384


>gi|218931760|gb|ACL12518.1| CAD [Sobarocephala setipes]
          Length = 1274

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 366 SGSQAIKALKEEKVQTVLINPNIATVQTSKGLADKCYFLPLTPNYVEQVIKAERPTGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     I     +    + I +   + D+     +    +  V    +
Sbjct: 426 TFGGQTALNCGVELERAGIFAKYNVKILGTPIQSIIETEDRKLFAERVNEINEQVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +   ++   +  P + +       LG      +  +    L + +  H  QL+I++
Sbjct: 486 VYSVQEAREAAKRLGYPVMARAAFSLGGLGSGFADNETELAA--LANQALAHSSQLIIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLNNREYNMLRTT 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 603 ALKVIRHFGVIGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|158451115|gb|ABW38918.1| putative CAD trifunctional protein [Axia margarita]
 gi|254933943|gb|ACT87580.1| carbamoylphosphate synthetase [Axia margarita]
          Length = 976

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  A+ +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQCIKAMREEKIQTVLINPNIATVQTSKGLADKIYFLPITPEYVEQVIKAERPTGIML 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I +   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGIELQKSGIFDKYNVTVLGTPIQSIVDTEDRKIFASKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + ++ DQL+I++
Sbjct: 496 VTSMEEALTAALQIGYPVMARSAFSLGGLGSGFANNEDEL--KALTHLALSYSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|187925399|ref|YP_001897041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           phytofirmans PsJN]
 gi|187716593|gb|ACD17817.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           phytofirmans PsJN]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPETIRMMGDKVTAKQTMIKTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEIVKIARQVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLADSFKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|168185796|ref|ZP_02620431.1| pyruvate carboxylase [Clostridium botulinum C str. Eklund]
 gi|169295974|gb|EDS78107.1| pyruvate carboxylase [Clostridium botulinum C str. Eklund]
          Length = 1145

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   + ++ G + A+L  D   +    
Sbjct: 17  AIRIFRACNELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNQGPIEAYLNIDEIISLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK++SK V  S  VP  P
Sbjct: 77  KGVDAIHPGYGFLSENAEFVRKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVNVPTIP 136

Query: 110 SILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +          +        P ++K   GG   G+ +++    +      + +     +
Sbjct: 137 GVEKPVTSEEEAIKFADYCGYPIMLKAAAGGGGRGMRIVRNKDELIPSFKSAKNEAKKAF 196

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   V+GD   ++  +            K         LP +  
Sbjct: 197 GIDDIFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKEKR 256

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    +++G R     +FL D      +++E+N +
Sbjct: 257 EEICS----DALKIARSVGYRSAGTLEFLVDMHGNH-YFIEMNPR 296


>gi|327191470|gb|EGE58491.1| pyruvate carboxylase protein [Rhizobium etli CNPAF512]
          Length = 1154

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 155 MAAAIGYPVMLKASWGGGGRGMRVIRAEADLAREVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSESQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|330798847|ref|XP_003287461.1| methylcrotonyl-CoA carboxylase [Dictyostelium purpureum]
 gi|325082544|gb|EGC36023.1| methylcrotonyl-CoA carboxylase [Dictyostelium purpureum]
          Length = 689

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++++++ +   +  S              V+   +   
Sbjct: 174 ALKIGYPVLIKAVMGGGGKGMRIVEREEDLEDGVNSSKREAQASFGDSRVLVEKYLVHPR 233

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + + +++   A  A +A+G
Sbjct: 234 HVEIQVFADKHGNCVHLFERDCSVQRRHQKIIEEAPAPHLSEDLRQKMGSAAVAAAKAVG 293

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+        F++E+N       P +T +            + ++L+ W ++
Sbjct: 294 YVGAGTVEFILS-QDGSFFFMEMNTRLQVEHP-ITEM-----------ITKQDLVEWQLK 340

Query: 295 DA 296
            A
Sbjct: 341 VA 342


>gi|218514062|ref|ZP_03510902.1| D-alanine-D-alanine ligase protein [Rhizobium etli 8C-3]
          Length = 41

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 10/39 (25%), Positives = 21/39 (53%), Gaps = 2/39 (5%)

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVED--ASCLR 300
             PG T ++++ +  A +G S+ E++  +V+   A   R
Sbjct: 1   TIPGFTDITMYSKAMAASGVSYAEVIDRLVDHGMARAGR 39


>gi|190893854|ref|YP_001980396.1| pyruvate carboxylase [Rhizobium etli CIAT 652]
 gi|190699133|gb|ACE93218.1| pyruvate carboxylase protein [Rhizobium etli CIAT 652]
          Length = 1154

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ VI+ +  +  ++ ++           E Y++ +    
Sbjct: 155 MAAAIGYPVMLKASWGGGGRGMRVIRAEADLAREVTEAKREAMAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|76802886|ref|YP_330981.1| carbamoyl phosphate synthase large subunit [Natronomonas pharaonis
           DSM 2160]
 gi|76558751|emb|CAI50344.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing), large subunit
           [Natronomonas pharaonis DSM 2160]
          Length = 1077

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/325 (13%), Positives = 96/325 (29%), Gaps = 53/325 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + V+ GG        +  G+             AL + G     ++ +            
Sbjct: 582 VVVVGGGP-------IRIGQGVEFDYCAVHAVRALREEGIDAHVVNNNPETVSTDYDTSD 634

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL------LEIPYTHSGI 84
                      V  ++     D       G    +       EL       +I  T    
Sbjct: 635 GLFFEPITAEEVADIIEETDADGVMVQFGGQTSVNVGEPLEDELERRGLDCDIMGTSVEA 694

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +  A   D+  +         P   +       +D  H I  P +++P        + V+
Sbjct: 695 MDLAEDRDRFNALMDELGISQPEGGTATSKAEALDLAHDIGYPVLVRPSYVLGGRAMDVV 754

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +   + ++   +    +L++ +  D +EL    + D    +    +   +     
Sbjct: 755 YSDAELEEYIEEAVRVSPDKPILVDDFLADAVELDVDAVSDGEDVIIGGIMEHVEAAG-- 812

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +S  ++  + P  +  D+ + V+ +     + +   G+            +VF LE N
Sbjct: 813 -VHSGDSACMIPPRSLSQDVLERVREVTLDIARGLDTVGLLNVQLAV--RDGEVFVLEAN 869

Query: 264 VQPGMTPVSIFPEMAAYAGYSFREL 288
            +   T     P ++   G    +L
Sbjct: 870 PRSSRT----VPFVSKATGVPIAKL 890



 Score = 43.3 bits (100), Expect = 0.038,   Method: Composition-based stats.
 Identities = 39/300 (13%), Positives = 95/300 (31%), Gaps = 36/300 (12%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++ G +V  +         D               ++  V+    PD    
Sbjct: 27  SGAQACRALQEEGARVVLVNSNPATIMTDPEMADKVYVEPITTDAIAEVIRKEDPDGVIA 86

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G  G +       + +L+   +    + +     + D+   ++ +   G PVC S  
Sbjct: 87  GLGGQTGLNVTAELAEEGVLDEHGVEIMGTPLDTIYATEDRDLFRERMKDIGEPVCRSET 146

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              ++      + +   P + +        G  V+   + +     +    +   ++ I 
Sbjct: 147 ISSMDEVEDAVESVGGLPVIARTAYTLGGSGSGVVDDMEELREIARKGFQLSRNHEVQIT 206

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G  +          D + I +   +       ++  ++       IP + ++E++ 
Sbjct: 207 ESIAGW-VELEYEVMRDADDSCIIICNMENIDPMGIHTGESTVVTPSQVIPDEAHQEMRN 265

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A    + +G  G       +        +   +E+N  P ++  S     +   GY   
Sbjct: 266 SALKVIRELGIEGGCNIQHAWRDDGTPSGEYRVVEVN--PRVSRSS--ALASKATGYPIA 321


>gi|56475599|ref|YP_157188.1| biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme
           [Aromatoleum aromaticum EbN1]
 gi|56311642|emb|CAI06287.1| biotin carboxylase subunit of acetyl-CoA carboxylase-like enzyme
           [Aromatoleum aromaticum EbN1]
          Length = 460

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 45/143 (31%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IK + GG   G+ ++ +   +   +  + +  H        Y++    +  
Sbjct: 147 AEKTGWPILIKAVSGGGGRGMKLVHEPDQLAATIELAMAEAHASFGDPRVYLERYVASGR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E  +          +             +   +  ++   A    + +  
Sbjct: 207 HVEVQVLGDGENVIHLGTRDCSIQRRYQKLVEEAPAPNLRDGLRADMHCAAITFAKHLEY 266

Query: 241 RGISRSDFLFDPLSRKVFWLEIN 263
           RG+   + L D      ++LE+N
Sbjct: 267 RGLGTVELLVDCERDTFYFLEMN 289


>gi|54294716|ref|YP_127131.1| hypothetical protein lpl1793 [Legionella pneumophila str. Lens]
 gi|53754548|emb|CAH16032.1| hypothetical protein lpl1793 [Legionella pneumophila str. Lens]
          Length = 654

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+  +  ++     L        +S+     ++    ++  
Sbjct: 148 AKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMTSFADDTMIIERLVLNPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   +M D   +V  +            +             +   + + +   A    
Sbjct: 208 HVEVQIMADNHGNVVHLFERDCSIQ----RRHQKIIEEAPAPNLSPVLRQRLAEAACEVA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++I  RG    +FL D    K +++E+N +
Sbjct: 264 RSINYRGAGTVEFLLDGED-KFYFMEMNTR 292


>gi|127514146|ref|YP_001095343.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella loihica
            PV-4]
 gi|126639441|gb|ABO25084.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella loihica
            PV-4]
          Length = 1516

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 89/234 (38%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             S  VPV P            ++  + I  P ++K ++GG   GI V+++ + +     +
Sbjct: 1065 QSQNVPVVPGSHGILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVQRPEDMISLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGLRDCSVQRNNQKVIEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ELKQQVMEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|322387211|ref|ZP_08060821.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           ATCC 700779]
 gi|321141740|gb|EFX37235.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           ATCC 700779]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  + K +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEATGKFYFMEMNTR 293


>gi|296877090|ref|ZP_06901131.1| acetyl-CoA carboxylase subunit A [Streptococcus parasanguinis ATCC
           15912]
 gi|296431951|gb|EFH17757.1| acetyl-CoA carboxylase subunit A [Streptococcus parasanguinis ATCC
           15912]
          Length = 462

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ +++ +   GVPV P    
Sbjct: 85  AIHPGFGFLSENSKFATMCEEVGIKFIGPSAKVMDMMGDKINARKQMIKAGVPVIPGSDG 144

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 145 EVYTAEEALEIAERIGYPVMLKASAGGGGKGIRKVEKPEDLVAAFESASSEAQAAFGNGA 204

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 205 MYMERVIYPARHIEVQILADQHGHVIHLGERDCSLQRNNQKVLEESPSIAI----GKTLR 260

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A  A +++G       +FL+D    + +++E+N +
Sbjct: 261 NRIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNTR 301


>gi|288553333|ref|YP_003425268.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
 gi|288544493|gb|ADC48376.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           pseudofirmus OF4]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 76/248 (30%), Gaps = 15/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I    ++ +   
Sbjct: 47  EAYCIGPTPSNKSYLNFTNIMSIATLTETDAIHPG-YGFLAENADFAEICAACKVTFVGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              A      K  +++ ++  GVP+ P     +      M     I  P +IK   GG  
Sbjct: 106 SPQAINKMGTKDVARETMAQAGVPIVPGSDGIVEDAEAGMKVAEEIGFPVIIKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            GI V +  + +   +  +             Y++        +    L      V    
Sbjct: 166 KGIRVARTPEELKKGMNITQQEAATAFGNPGVYIEKYIEDFRHVEIQVLADNHGNVVHLG 225

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+  I  +   E+   A  A +A+   G    +F+FD  + + 
Sbjct: 226 ERDCSIQRRLQKLLEETPSPAITPEKRAEMGAAAVAAAKAVNYSGAGTVEFIFDHNTGEF 285

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 286 YFMEMNTR 293


>gi|242242420|ref|ZP_04796865.1| pyruvate carboxylase [Staphylococcus epidermidis W23144]
 gi|242234127|gb|EES36439.1| pyruvate carboxylase [Staphylococcus epidermidis W23144]
          Length = 1153

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCADEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 264 DAAIQLMKNIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|188038100|gb|ACD46685.1| plastid acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|188038096|gb|ACD46683.1| plastid acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|188038094|gb|ACD46682.1| plastid acetyl-CoA carboxylase [Triticum turgidum subsp. durum]
 gi|188038098|gb|ACD46684.1| plastid acetyl-CoA carboxylase [Triticum aestivum]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|188038092|gb|ACD46681.1| plastid acetyl-CoA carboxylase [Triticum turgidum subsp. durum]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|188038089|gb|ACD46679.1| plastid acetyl-CoA carboxylase [Aegilops tauschii]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|188038086|gb|ACD46677.1| plastid acetyl-CoA carboxylase [Triticum urartu]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|2827150|gb|AAC39330.1| acetyl-coenzyme A carboxylase [Triticum aestivum]
          Length = 2311

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|2827154|gb|AAC39332.1| acetyl-coenzyme A carboxylase [Triticum aestivum]
          Length = 619

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|2827152|gb|AAC39331.1| acetyl-coenzyme A carboxylase [Triticum aestivum]
          Length = 619

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
             +I  P +IK   GG   GI  +  D  +     Q      G  + I +       L  
Sbjct: 310 CQMIGYPAMIKASWGGGGKGIRKVNNDDDVRALFKQVQGEVPGSPIFIMRLASQSRHLEV 369

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K        V P +   ++ +     A    +A+G
Sbjct: 370 QLLCDQYGNVAALHSRDCSVQRRHQKIIEEGPVTVAPRETVKELEQ----AARRLAKAVG 425

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+   + + ++LE+N +
Sbjct: 426 YVGAATVEYLYSMETGEYYFLELNPR 451


>gi|322827620|gb|EFZ31725.1| glutamine dependent carbamoyl-phosphate synthase, putative
           [Trypanosoma cruzi]
          Length = 851

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/314 (14%), Positives = 96/314 (30%), Gaps = 36/314 (11%)

Query: 2   AVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQIDVD----------------- 39
           AVL  G    G S E +     G   A  L   G KV  I+ +                 
Sbjct: 91  AVLGCGVYRIGNSVEFD---YGGVLVARELRRLGKKVILINYNPETVSTDYDECDRLYFE 147

Query: 40  ----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
                +V  +L   +       L G   ++  ++     L I  T    +  A +  K  
Sbjct: 148 EVSEETVLDILLKERIQGVVISLGGQIVQNMALRLKQHGLPILGTDPVNVDKAENRHKFS 207

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                     P            +    +  P +++P    S   + VI     I   L 
Sbjct: 208 KMCDELGVLQPEWILSTSVEQVHEFCKQVGFPTLVRPSYVLSGSAMAVIASAADINRYLE 267

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           +++  +    +++ +Y +G           +     +     +       +S   +  + 
Sbjct: 268 EAALVSGEHPVVVSKYYEGAMEYDV--DIVAHHGRVLCYAICEHVENAGVHSGDATMFLP 325

Query: 216 PAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
           P     ++ K +     L  + +   G     FL     +++  +E N++   +  S  P
Sbjct: 326 PQNTEKEVMKRIYNTTALIAEELDVVGPMNIQFLLT-KDKQLRVIEANIR---SSRS-VP 380

Query: 276 EMAAYAGYSFRELL 289
            ++   G SF  ++
Sbjct: 381 FVSKTLGISFPAVM 394


>gi|302332723|gb|ADL22916.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           JKD6159]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|298694347|gb|ADI97569.1| Pyruvate carboxyl transferase [Staphylococcus aureus subsp. aureus
           ED133]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|282916364|ref|ZP_06324126.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus D139]
 gi|282319804|gb|EFB50152.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus D139]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|258444985|ref|ZP_05693302.1| pyruvate carboxylase [Staphylococcus aureus A6300]
 gi|257856107|gb|EEV79025.1| pyruvate carboxylase [Staphylococcus aureus A6300]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|258436137|ref|ZP_05689120.1| pyruvate carboxylase [Staphylococcus aureus A9299]
 gi|257848826|gb|EEV72811.1| pyruvate carboxylase [Staphylococcus aureus A9299]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +   ++      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQAIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|258423614|ref|ZP_05686504.1| pyruvate carboxylase [Staphylococcus aureus A9635]
 gi|283770175|ref|ZP_06343067.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus H19]
 gi|257846315|gb|EEV70339.1| pyruvate carboxylase [Staphylococcus aureus A9635]
 gi|283460322|gb|EFC07412.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus H19]
 gi|323440663|gb|EGA98373.1| pyruvate carboxylase [Staphylococcus aureus O11]
 gi|323442394|gb|EGB00024.1| pyruvate carboxylase [Staphylococcus aureus O46]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|253733651|ref|ZP_04867816.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728351|gb|EES97080.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|242556622|pdb|3HBL|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556623|pdb|3HBL|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556624|pdb|3HBL|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
 gi|242556625|pdb|3HBL|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase T908a
           Mutant
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|242556615|pdb|3HB9|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556616|pdb|3HB9|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556617|pdb|3HB9|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
 gi|242556618|pdb|3HB9|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase A610t
           Mutant
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|218526212|gb|ACK86513.1| carbamoyl-phosphate synthase [Nallachius pulchellus]
          Length = 732

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       +  V+   +P     
Sbjct: 133 SGSQAIKALREENIQTILINPNIATVQTSKGLADKVYYLPLLPEYIEQVIKSERPGGVLL 192

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG--VPVCPS 110
              G      G       + +        + I +   + D+    + +S     V    +
Sbjct: 193 TFGGQTALNCGVQLEKANVFKKYGCRILGTPIESIIETEDRKMFAEKISQINERVAPSEA 252

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG         +    L + +  H  Q++I++
Sbjct: 253 VYSIEEALNAAEKIGYPVMTRAAFSLGGLGSGFANNKDELRQ--LAAQALAHSSQVIIDK 310

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 311 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRST 369

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 370 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 425

Query: 291 WM 292
            +
Sbjct: 426 KL 427


>gi|168988872|pdb|3BG5|A Chain A, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988873|pdb|3BG5|B Chain B, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988874|pdb|3BG5|C Chain C, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
 gi|168988875|pdb|3BG5|D Chain D, Crystal Structure Of Staphylococcus Aureus Pyruvate
           Carboxylase
          Length = 1173

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 90  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 148

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 149 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 208

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 209 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 268

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 269 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 317


>gi|56207582|emb|CAI20956.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Danio rerio]
          Length = 2154

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+ + +PD    
Sbjct: 417 SGSQAIKAMKEENIQTILINPNIATVQTSKGLADKVYFLPITPEYVTQVIKNERPDGVLL 476

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   Q +LE  ++    + + +  ++ D+     K    +  V    +
Sbjct: 477 TFGGQTALNCGVELKKQGVLEKYKVRVLGTPVASIEMTEDRKIFVEKMEEINEHVAPSEA 536

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +  P +++       LG         +   + Q+ +     Q+L+++
Sbjct: 537 AMSVEQAVAAAERLGYPVLVRSAFALGGLGSGFANNRDEMITLVTQAFAHT--SQVLVDK 594

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 + Y  ++  
Sbjct: 595 SLKGWKEIEYEVVRDAYDNCVTVCNMENIDPLGIHTGESIVVAPSQTLNDYE-YNMLRNT 653

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 654 AIKVIRHLGVVGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 709

Query: 291 WM 292
            +
Sbjct: 710 KL 711


>gi|57770415|ref|NP_001009884.1| CAD protein [Danio rerio]
 gi|53854121|gb|AAU95538.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Danio rerio]
          Length = 2230

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+ + +PD    
Sbjct: 417 SGSQAIKAMKEENIQTILINPNIATVQTSKGLADKVYFLPITPEYVTQVIKNERPDGVLL 476

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   Q +LE  ++    + + +  ++ D+     K    +  V    +
Sbjct: 477 TFGGQTALNCGVELKKQGVLEKYKVRVLGTPVASIEMTEDRKIFVEKMEEINEHVAPSEA 536

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +  P +++       LG         +   + Q+ +     Q+L+++
Sbjct: 537 AMSVEQAVAAAERLGYPVLVRSAFALGGLGSGFANNRDEMITLVTQAFAHT--SQVLVDK 594

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 + Y  ++  
Sbjct: 595 SLKGWKEIEYEVVRDAYDNCVTVCNMENIDPLGIHTGESIVVAPSQTLNDYE-YNMLRNT 653

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 654 AIKVIRHLGVVGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 709

Query: 291 WM 292
            +
Sbjct: 710 KL 711


>gi|15924104|ref|NP_371638.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15926699|ref|NP_374232.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315]
 gi|148267607|ref|YP_001246550.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH9]
 gi|150393662|ref|YP_001316337.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156979437|ref|YP_001441696.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|253316745|ref|ZP_04839958.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           CF-Marseille]
 gi|255005901|ref|ZP_05144502.2| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           Mu50-omega]
 gi|257795155|ref|ZP_05644134.1| pyruvate carboxylase [Staphylococcus aureus A9781]
 gi|258407136|ref|ZP_05680285.1| pyruvate carboxylase [Staphylococcus aureus A9763]
 gi|258421772|ref|ZP_05684693.1| pyruvate carboxylase [Staphylococcus aureus A9719]
 gi|258443374|ref|ZP_05691717.1| pyruvate carboxylase [Staphylococcus aureus A8115]
 gi|258449840|ref|ZP_05697938.1| pyruvate carboxylase [Staphylococcus aureus A6224]
 gi|258454939|ref|ZP_05702902.1| pyruvate carboxylase [Staphylococcus aureus A5937]
 gi|269202726|ref|YP_003281995.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282894141|ref|ZP_06302372.1| pyruvate carboxylase [Staphylococcus aureus A8117]
 gi|282928636|ref|ZP_06336233.1| pyruvate carboxylase [Staphylococcus aureus A10102]
 gi|295405918|ref|ZP_06815727.1| pyruvate carboxylase [Staphylococcus aureus A8819]
 gi|296276065|ref|ZP_06858572.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MR1]
 gi|297246388|ref|ZP_06930232.1| pyruvate carboxylase [Staphylococcus aureus A8796]
 gi|242556707|pdb|3HO8|A Chain A, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556708|pdb|3HO8|D Chain D, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556709|pdb|3HO8|C Chain C, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|242556710|pdb|3HO8|B Chain B, Crystal Structure Of S. Aureus Pyruvate Carboxylase In
           Complex With Coenzyme A
 gi|13700915|dbj|BAB42211.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus N315]
 gi|14246884|dbj|BAB57276.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|147740676|gb|ABQ48974.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH9]
 gi|149946114|gb|ABR52050.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus JH1]
 gi|156721572|dbj|BAF77989.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|257789127|gb|EEV27467.1| pyruvate carboxylase [Staphylococcus aureus A9781]
 gi|257841291|gb|EEV65736.1| pyruvate carboxylase [Staphylococcus aureus A9763]
 gi|257842105|gb|EEV66533.1| pyruvate carboxylase [Staphylococcus aureus A9719]
 gi|257851464|gb|EEV75403.1| pyruvate carboxylase [Staphylococcus aureus A8115]
 gi|257856760|gb|EEV79663.1| pyruvate carboxylase [Staphylococcus aureus A6224]
 gi|257862819|gb|EEV85584.1| pyruvate carboxylase [Staphylococcus aureus A5937]
 gi|262075016|gb|ACY10989.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ED98]
 gi|282589675|gb|EFB94761.1| pyruvate carboxylase [Staphylococcus aureus A10102]
 gi|282763627|gb|EFC03756.1| pyruvate carboxylase [Staphylococcus aureus A8117]
 gi|285816795|gb|ADC37282.1| Pyruvate carboxyl transferase [Staphylococcus aureus 04-02981]
 gi|294969353|gb|EFG45373.1| pyruvate carboxylase [Staphylococcus aureus A8819]
 gi|297176754|gb|EFH36014.1| pyruvate carboxylase [Staphylococcus aureus A8796]
 gi|312829508|emb|CBX34350.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315130300|gb|EFT86287.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|329725206|gb|EGG61695.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21172]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|327441192|dbj|BAK17557.1| pyruvate carboxylase [Solibacillus silvestris StLB046]
          Length = 1144

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 76/235 (32%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 64  LDI-EGIIKIAKEANVDAIHPG-YGFLSENVDFARRCEEEGIQFIGPTSKHLDMFGDKVK 121

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++   S  +PV P     +   +           P +IK   GG   G+ ++   + + 
Sbjct: 122 AREQAVSAQIPVIPGTDGPVANLQEVEQFSDSYGFPIMIKAALGGGGRGMRLVNSKEELQ 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+   +    +    +  T   +         ++      
Sbjct: 182 SAYERAKSEAKAAFGSDEVYVEKAIIKPKHIEVQIIGDTHGNIVHLYERDCSIQRRHQKV 241

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P+    + +  ++   A    + +G       +FL      + +++E+N +
Sbjct: 242 VEIAPSNSISEQLRNDICDAAVKLMKNVGYINAGTVEFLV--ADNQFYFIEVNPR 294


>gi|300087163|ref|YP_003757685.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
 gi|299526896|gb|ADJ25364.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Dehalogenimonas lykanthroporepellens BL-DC-9]
          Length = 469

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 86/275 (31%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQID--VDRSVGL---------------VLAHLKPDLAFN-------- 56
              A  + G     +    D+                    L++L  D            
Sbjct: 17  VMRACRELGINTVAVYSEADKDAFFAFYADEAYLLGPAPATLSYLNIDKIIEIAKTSGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+       E   I +         L+ +K+ +++     GVP+ P    
Sbjct: 77  AIHPGYGFLSENPTFAQACEKAGIAFIGPPARVLELTGNKITAREEAVKAGVPIIPGTGE 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                 +       I  P ++KP  GG  +G+++ + D  +   L  S    +    +  
Sbjct: 137 CPADFSALQDELGDIGYPLIVKPAGGGGGIGMVIARNDGDLQRALSSSPEMANKYFGIST 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  T+  V         ++          P+     +I +++ 
Sbjct: 197 IYIEKYIEKPRHIEFQILADTKGNVIHLGERECSIQRFHSKVIEEAPSTALTPEIREKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           + A    + IG  G    +F++       ++LE+N
Sbjct: 257 QAAVDLARGIGYVGAGTIEFIYSE--GNYYFLEVN 289


>gi|119176099|ref|XP_001240175.1| hypothetical protein CIMG_09796 [Coccidioides immitis RS]
          Length = 2284

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+  G     I+ +                       V  V+ H +PD  + 
Sbjct: 524 SGSQAIKALKQEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIKHERPDAIYV 583

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 584 TFGGQTALQVGIQLKDEFEELGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAS 643

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           T++        I  P +++       LG       + +    L + ++    Q+LIE+ +
Sbjct: 644 TLEEAMEVVKGIGFPVIVRAAYALGGLGSGFADNAEQLRD--LCAKAFAASPQVLIEKSM 701

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 702 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 760

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 761 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 810


>gi|58615305|gb|AAW80263.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Danio rerio]
          Length = 2226

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+ + +PD    
Sbjct: 413 SGSQAIKAMKEENIQTILINPNIATVQTSKGLADKVYFLPITPEYVTQVIKNERPDGVLL 472

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   Q +LE  ++    + + +  ++ D+     K    +  V    +
Sbjct: 473 TFGGQTALNCGVELTKQGVLEKYKVRVLGTPVASIEMTEDRKIFVEKMEEINEHVAPSEA 532

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     + +   +  P +++       LG         +   + Q+ +     Q+L+++
Sbjct: 533 AMSVEQAVAAAERLGYPVLVRSAFALGGLGSGFANNRDEMITLVTQAFAHT--SQVLVDK 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +     +                 + Y  ++  
Sbjct: 591 SLKGWKEIEYEVVRDAYDNCVTVCNMENIDPLGIHTGESIVVAPSQTLNDYE-YNMLRNT 649

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 650 AIKVIRHLGVVGECNIQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 705

Query: 291 WM 292
            +
Sbjct: 706 KL 707


>gi|52307895|gb|AAU38395.1| AccC protein [Mannheimia succiniciproducens MBEL55E]
          Length = 467

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/282 (15%), Positives = 85/282 (30%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 33  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNVPAIIAAAEVT 92

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E+    +         L  DK+ +   +   GVP  P
Sbjct: 93  GADAIHPG-YGFLSENADFAEQVEVSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 151

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                            + I  P +IK   GG   G+ V++ D+S+   +  + +     
Sbjct: 152 GSDGPLGTDMVKNKQIANRIGYPVIIKASGGGGGRGMRVVRNDESLEESIAMTKAEAKAA 211

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
                 Y++        +    +  T             ++          PA  I  +I
Sbjct: 212 FNNDMVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQKVLEEAPAPGITEEI 271

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +++ +    A   IG RG    +FL+     K +++E+N +
Sbjct: 272 RRDIGQRCANACIEIGYRGAGTFEFLY--EDGKFYFIEMNTR 311


>gi|296133222|ref|YP_003640469.1| acetyl-CoA carboxylase, biotin carboxylase [Thermincola sp. JR]
 gi|296031800|gb|ADG82568.1| acetyl-CoA carboxylase, biotin carboxylase [Thermincola potens JR]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/248 (15%), Positives = 75/248 (30%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I E   I +   
Sbjct: 47  EAFCIGPAPSGKSYLNKANIIAAAEVSGADAIHPG-YGFLAENAEFAEICESCGIKFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            I A      K  +++ +   GVPV P     I      +     I  P +IK   GG  
Sbjct: 106 SISALENMGAKAVARETMIKAGVPVVPGTEGVITDKEEAVRIAQEIGYPVIIKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ + +    +   +  + +         E Y++        +    L           
Sbjct: 166 KGMRIAQSKNDLIKAIQTAQAEAEAAFGNAEVYIEKYVEEPRHIEFQILADNYGNTVYLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P+     ++ K++  +A  A +A+        +FL D      
Sbjct: 226 ERDCSIQRRNQKLLEEAPSSALTPELRKKMGEMAVRAAKAVNYSNAGTVEFLLD-KDNNF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFIEMNTR 292


>gi|294672957|ref|YP_003573573.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           ruminicola 23]
 gi|294473544|gb|ADE82933.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella
           ruminicola 23]
          Length = 401

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 26/265 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V+   KPD+    +      + L +   + +++  +   +  +            
Sbjct: 54  DALEAVVNKHKPDIIVPEIE-AIRTERLFKFEEQGIQVVPSARAVNFTMNRRAIRDLASK 112

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                               +   I  P V+KPL   S  G   +  D  +     ++  
Sbjct: 113 ELGLRTAKYFYAKTFDEFKAAADEIGFPCVVKPLMSSSGHGQSYVHNDDELEQAFKEAME 172

Query: 160 WNHGD------QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            + GD      +  I+   +   LT                       Y           
Sbjct: 173 GSRGDVKEVIIEEFIDFDSEFTLLTVTQKNGRPTLFCPPIGHVQKAGDYRES-------- 224

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-- 268
             P KI  +  K+ Q +A    +A+   GI   +F       +V + E++ +P   GM  
Sbjct: 225 WQPYKISDEALKQAQIMADKVTKALTGAGIWGVEFFLTKQ-GEVIFSELSPRPHDTGMVT 283

Query: 269 ----TPVSIFPEMAAY-AGYSFREL 288
               T +S F        G     +
Sbjct: 284 LGHTTNLSEFELHFRAVMGMPIPAI 308


>gi|212211769|ref|YP_002302705.1| biotin carboxylase [Coxiella burnetii CbuG_Q212]
 gi|212010179|gb|ACJ17560.1| biotin carboxylase [Coxiella burnetii CbuG_Q212]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +      A  L  +K+ + + +   G+P  P         
Sbjct: 82  YGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDGALGKD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+ ++  +   +  + +         E Y++
Sbjct: 142 GDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTDEVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L   +            ++          PA  I       +     
Sbjct: 202 KFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQKVIEEAPAPGITPKQRATIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A+  RG    +FL+   + + +++E+N +
Sbjct: 262 QACIAMNYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|34398201|gb|AAQ67190.1| CAD [Phora sp. JS299]
          Length = 1297

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 365 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTKEYVEQVIKAERPNGVLL 424

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + ++     V    +
Sbjct: 425 TFGGQTALNCGIELEKAGVFSTYGVKILGTPITSIINTEDRKIFSEKITEIGEKVAPSEA 484

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 485 VFSVSEALEAAERLGYPVMARAAFSLGGLGSGFADNAEELSN--LAQQALAHSSQLVIDK 542

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 543 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 601

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 602 AIKVIRHFGVVGECNIQYALCPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 657

Query: 291 WM 292
            +
Sbjct: 658 KL 659


>gi|85859418|ref|YP_461620.1| pyruvate carboxylase biotin carboxylase subunit [Syntrophus
           aciditrophicus SB]
 gi|85722509|gb|ABC77452.1| pyruvate carboxylase biotin carboxylase subunit [Syntrophus
           aciditrophicus SB]
          Length = 486

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/237 (14%), Positives = 74/237 (31%), Gaps = 9/237 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D+ +         D      +G   E     A      I +            +K+ 
Sbjct: 66  LDIDK-IIWAARKSGADAIHPG-YGFLSEIPEFSAECARAGIVFIGPPPDVIRNLGNKVV 123

Query: 96  SKQVVSSCGVPVCPSILVNR-------FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           ++ ++    +P  P               +        P ++K   GG   GI  +  + 
Sbjct: 124 ARDIIEKANLPFIPGTKDLFRGDAGLREAIAFGRRYGYPVMLKASSGGGGRGIRKVINEA 183

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            + + L Q+ +           YV+        +    L  +   V         ++   
Sbjct: 184 DLEIQLPQARAEALSAFGDENVYVEKCIEAPRHVEIQILADSYGNVIHLGSRDCSIQRRH 243

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                + PA +P D+   +   A  A +  G       +FL D  + + +++E+N +
Sbjct: 244 QKLLEIAPADLPPDVLNAMYGAAIEAARVAGYVNAGTVEFLVDSRTNEFWFMEMNTR 300


>gi|225851023|ref|YP_002731257.1| phosphoribosylglycinamide formyltransferase 2 [Persephonella marina
           EX-H1]
 gi|225646608|gb|ACO04794.1| phosphoribosylglycinamide formyltransferase 2 [Persephonella marina
           EX-H1]
          Length = 392

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/272 (14%), Positives = 78/272 (28%), Gaps = 34/272 (12%)

Query: 22  CASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVLHGN 61
              AL   G +V  +D                +D      +       KPD     +   
Sbjct: 27  VIEALR-LGIEVIAVDSYQFAPAQQVAQKYYVIDMKNPDQIRNIVYREKPDFIVPEIE-A 84

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
              D L++   E   +  +   +  +   +   R                        + 
Sbjct: 85  IDTDVLLELEKEGFTVVPSAKAVKYTMNRIGIRRLAAEEVGLKTSAYRFASDIDTYRKAI 144

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIELTC 179
             I  P V+KP+   S  G  ++++   I      +     G   +++IE+++D      
Sbjct: 145 QEIGLPAVVKPVMSSSGKGQSIVREKDQIDKAWYYAQENARGKGGEVIIEEFIDFDFEIT 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +        T    P         +          P  +     +  + +A     A+G
Sbjct: 205 LLTVRTKNQGTLFCEPIGHI-----QVEGDYHESWQPQPMSETALERAKEIATKITDALG 259

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             GI   +        +V++ EI+ +P   GM
Sbjct: 260 GYGIFGCELFV--KGDQVWFNEISPRPHDTGM 289


>gi|171060656|ref|YP_001793005.1| acetyl-CoA carboxylase, biotin carboxylase [Leptothrix cholodnii
           SP-6]
 gi|170778101|gb|ACB36240.1| acetyl-CoA carboxylase, biotin carboxylase [Leptothrix cholodnii
           SP-6]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 75/218 (34%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +      +  L  DK+ +K  +   GVP  P +  
Sbjct: 77  AIHPGYGFLSENANFAERVEKSGFAFIGPTPESIRLMGDKVSAKDAMVKAGVPTVPGVPG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                ++  +     +  P +IK   GG   G+ V+  + ++   +  + +         
Sbjct: 137 ALPEDSKEVIRIAREVGYPVIIKASGGGGGRGMRVVHTEAALLTAVQTTRAEAGAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L  T             ++          P   IP  + ++V
Sbjct: 197 AVYLEKFLENPRHIEIQVLADTHGNAVWLGERDCSMQRRHQKIIEEAPAPGIPRKVIEKV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + IG RG    +FLF   + + +++E+N +
Sbjct: 257 GERCAAACKKIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|163756434|ref|ZP_02163547.1| carbamoyl-phosphate synthase large subunit [Kordia algicida OT-1]
 gi|161323542|gb|EDP94878.1| carbamoyl-phosphate synthase large subunit [Kordia algicida OT-1]
          Length = 951

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/255 (12%), Positives = 79/255 (30%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 624 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRHGIKIIGTTYQSLD 680

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    ++   P           +     +  P +++P       G+ ++  
Sbjct: 681 LAEDRGSFSTLLKENNIPYPEFGVAENADEALALADELDFPILVRPSYVLGGQGMKIVIN 740

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            Q +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 741 KQELEETVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG 800

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F        V+ +E N +
Sbjct: 801 ---DSNATLPPFNLGEFVMQQIKDHTKKIALALNTVGLINIQFAI--KDDMVYIIEANPR 855

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 856 ASRT----VPFIAKA 866



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 70/264 (26%), Gaps = 28/264 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-KPDLAF 55
           SG     +L + G +   I         D              +S+  VL      D   
Sbjct: 29  SGSQALRSLREDGIETILINSNPATIMTDPSMADHVYLKPLTTKSIIEVLKKHPNIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV--CP 109
             + G    +  ++A      E   +      I A  ++ D+ + ++++   GV +    
Sbjct: 89  PTMGGQTALNLCIEADEKGIWEDFGVKLIGVDIEAINITEDREKFRELMGQIGVGMAPQA 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +        +       P VI+        G  ++   +     L +    +   +++I+
Sbjct: 149 TATSFLKGKEIAQEFGFPLVIRASYTLGGAGASIVYDPEDFDELLRRGLEASPIHEVMID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             K    
Sbjct: 209 KAMMGWKEYELELLRDKNDNVVIICSIENMDPMGIHTGDSITVAPAMTLSDRTYQKMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPL 253
              +        G     F   P 
Sbjct: 269 AIKMMRSIGDFEGGCNVQFAVSPD 292


>gi|149915710|ref|ZP_01904235.1| acetyl-CoA carboxylase [Roseobacter sp. AzwK-3b]
 gi|149810292|gb|EDM70137.1| acetyl-CoA carboxylase [Roseobacter sp. AzwK-3b]
          Length = 471

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ ++++  +     LQ+S            Y++        +   
Sbjct: 170 FPMLLKAKSGGGGRGMRIVRELDAFRAQFLQASREAEAAFGDGGVYIERFFDAVRHIEIQ 229

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +          D     ++          P+  +  D+   ++  A    Q I   G  
Sbjct: 230 VMGDGRGGAVAFDERDCSVQRRHQKLIEESPSPAVGPDLRARLKEAALKLTQGISYEGAG 289

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +F+ D  + + F++E+N +
Sbjct: 290 TIEFILDVKTGEFFFIEMNTR 310


>gi|154706577|ref|YP_001423699.1| biotin carboxylase [Coxiella burnetii Dugway 5J108-111]
 gi|154355863|gb|ABS77325.1| biotin carboxylase [Coxiella burnetii Dugway 5J108-111]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +      A  L  +K+ + + +   G+P  P         
Sbjct: 82  YGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDGALGKD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+ ++  +   +  + +         E Y++
Sbjct: 142 GDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTDEVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L   +            ++          PA  I       +     
Sbjct: 202 KFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQKVIEEAPAPGITPKQRATIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A+  RG    +FL+   + + +++E+N +
Sbjct: 262 QACIAMNYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|15902429|ref|NP_357979.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae R6]
 gi|116515928|ref|YP_815898.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae D39]
 gi|149012176|ref|ZP_01833285.1| biotin carboxylase subunit [Streptococcus pneumoniae SP19-BS75]
 gi|225853999|ref|YP_002735511.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae JJA]
 gi|15457946|gb|AAK99189.1| Biotin carboxylase (a subunit of acetyl-CoA carboxylase (ACC)
           [Streptococcus pneumoniae R6]
 gi|116076504|gb|ABJ54224.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae D39]
 gi|147763778|gb|EDK70712.1| biotin carboxylase subunit [Streptococcus pneumoniae SP19-BS75]
 gi|225723885|gb|ACO19738.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae JJA]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 76/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K   +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A + +G       +FL D  SR  +++E+N +
Sbjct: 257 A----AAVRAAEFVGYENAGTIEFLLDEASRNFYFMEMNTR 293


>gi|88860981|ref|ZP_01135616.1| acetyl-CoA carboxylase [Pseudoalteromonas tunicata D2]
 gi|88816909|gb|EAR26729.1| acetyl-CoA carboxylase [Pseudoalteromonas tunicata D2]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 83/283 (29%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP------------------- 51
                 A ++ G K   +    DR +  VL         KP                   
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGKPAASESYLDIPRIIAAAEVT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D     +H   G   E+      +E     +         +  DK+ + + +   GVP  
Sbjct: 74  DAV--AIHPGYGFLSENADFADQVEKSGFIFIGPRGDTIRIMGDKVAAIEAMRKAGVPCV 131

Query: 109 PS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         N         I  P +IK   GG   G+ V++ +  +   +  +      
Sbjct: 132 PGSDGPLTADNERNKQIAKRIGFPVIIKAAGGGGGRGMRVVRSESELIDSIALTQQEAKQ 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLD 222
                  Y++        +    L   +            ++          PA  I  +
Sbjct: 192 FFGNGMVYMEKFLENPRHIEVQVLADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITAE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 MRKFIGERCTRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|71020597|ref|XP_760529.1| hypothetical protein UM04382.1 [Ustilago maydis 521]
 gi|46100424|gb|EAK85657.1| hypothetical protein UM04382.1 [Ustilago maydis 521]
          Length = 756

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK +KGG   G+ +          L  +              ++       
Sbjct: 206 ADKIGYPVLIKAVKGGGGKGMKIACTRDEFADALSSAQREALKSFGDATVLIEKYLTAPR 265

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA      +  E+   A  A +A+G
Sbjct: 266 HVEVQVFADTHGNAVYISERDCSVQRRHQKIIEEAPAPHLDARLRTELGEKAVAAAKAVG 325

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G    +F+ D    ++ +++E+N       P         EM   +G    +L+ W +
Sbjct: 326 YVGAGTVEFILDAQRPQEFYFMEMNTRLQVEHP-------VTEM--VSGL---DLVEWQL 373

Query: 294 EDASCLR 300
           E A+  R
Sbjct: 374 EVAAGNR 380


>gi|317054177|ref|YP_004118202.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
 gi|316952172|gb|ADU71646.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   VM D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVMADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRSFIGDRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|294142553|ref|YP_003558531.1| biotin carboxylase [Shewanella violacea DSS12]
 gi|293329022|dbj|BAJ03753.1| biotin carboxylase [Shewanella violacea DSS12]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 75/226 (33%), Gaps = 17/226 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D      +G   E+      +E     +         L  DK+ +   + + GVP  P
Sbjct: 76  KVDAIHPG-YGFLAENADFAEQVEACGFSFIGPTAAVIRLMGDKVSAISAMKATGVPTIP 134

Query: 110 SIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
                    ++      + I  P +IK   GG   G+ +++ +  +   +  + +     
Sbjct: 135 GSDAILSTDSQLNKRIANKIGYPVIIKATAGGGGRGMRLVRDESELIQTIELTQAEAKAA 194

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           + +GD  + +       +   V+ D   +   +            K         + A  
Sbjct: 195 FANGDVYMEKYLQTPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQKVIEEAPALGIDADT 254

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +I     +        IG RG    +FL++    + +++E+N +
Sbjct: 255 RREIGALCVKACVD----IGYRGAGTFEFLYEA--GRFYFIEMNTR 294


>gi|213969051|ref|ZP_03397190.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato T1]
 gi|301384054|ref|ZP_07232472.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato Max13]
 gi|302058760|ref|ZP_07250301.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato K40]
 gi|302131721|ref|ZP_07257711.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato NCPPB 1108]
 gi|213926049|gb|EEB59605.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato T1]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIELEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSVDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        ++G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIIEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPA 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +++G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTESLGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|153208242|ref|ZP_01946652.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165923953|ref|ZP_02219785.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           334]
 gi|212217948|ref|YP_002304735.1| biotin carboxylase [Coxiella burnetii CbuK_Q154]
 gi|120576147|gb|EAX32771.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii 'MSU
           Goat Q177']
 gi|165916609|gb|EDR35213.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           334]
 gi|212012210|gb|ACJ19590.1| biotin carboxylase [Coxiella burnetii CbuK_Q154]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +      A  L  +K+ + + +   G+P  P         
Sbjct: 82  YGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDGALGKD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+ ++  +   +  + +         E Y++
Sbjct: 142 GDANLLIAERIGYPVLIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTDEVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L   +            ++          PA  I       +     
Sbjct: 202 KFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQKVIEEAPAPGITPKQRATIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A+  RG    +FL+   + + +++E+N +
Sbjct: 262 QACIAMNYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|82750722|ref|YP_416463.1| pyruvate carboxylase [Staphylococcus aureus RF122]
 gi|82656253|emb|CAI80667.1| pyruvate carboxylase [Staphylococcus aureus RF122]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     I       +       P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTEGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|317049789|ref|YP_004117437.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
 gi|316951406|gb|ADU70881.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. At-9b]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/285 (15%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   VM D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVMADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRSFIGDRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|218289640|ref|ZP_03493860.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius LAA1]
 gi|218240290|gb|EED07473.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius LAA1]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/256 (16%), Positives = 78/256 (30%), Gaps = 24/256 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+       E   I +      A  L  DK  +K  +   GVP  P  
Sbjct: 76  DAVHPG-YGFLSENSDFAEACEACGITFIGPSPRAIELMGDKSTAKMTMRRAGVPTVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      +   + I  P +IK   GG   GI V++ +  +      +          
Sbjct: 135 EGLVESLEEALAIANAIGYPLIIKATAGGGGRGIRVVRDEPELRKAYDAARREAEASFGN 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L      V         ++          P  +  +  ++ 
Sbjct: 195 PGIYIEKYIERMRHVEIQILADRHGNVIHLGERDCSVQRRLQKLVEESPCPVMTEEKRQE 254

Query: 228 Q-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
               A  A +A+   G    +F++ P     +++E+N       P +T            
Sbjct: 255 MGEAAVRAARAVDYVGAGTVEFIYTP-DGDFYFMEMNTRIQVEHP-VTEW--------VT 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 305 GV---DLVREMILAAA 317


>gi|33240634|ref|NP_875576.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus subsp. marinus str. CCMP1375]
 gi|81664342|sp|Q7VBB3|PURT_PROMA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33238162|gb|AAQ00229.1| Formate-dependent phosphoribosylglycinamide formyltransferase
           [Prochlorococcus marinus subsp. marinus str. CCMP1375]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 72/268 (26%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G KV   D                       S+   +   KPD+    +
Sbjct: 17  GKEVAIAGKRLGCKVIACDRYEEAPAMQVADLAIVLDMNNHNSLQKTIRDYKPDVVIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  IP   +  +       +  + + ++                 
Sbjct: 77  EALAVEALKDIEKEGINVIPNARATAITMNRDQIRNLAAEKLAIKT-ANYGYASNIEELK 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    +  P ++KP+   S  G  +IK    +      +     GD   +        + 
Sbjct: 136 EVSKKVGFPLLVKPVMSSSGKGQSLIKDKNDLEKAWDLAIKEARGDSKQVIIEE---YIN 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +                       +          P K+  D  KE + +A      +
Sbjct: 193 FDLEITLLTIKQSNHQTIFCPPIGHEQKGGDYQCSWQPQKLSFDQLKEAKSIAKKVTNEL 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +F       +V + E++ +P
Sbjct: 253 GGIGLFGVEFFI--RGEEVIFSELSPRP 278


>gi|326485419|gb|EGE09429.1| protein kinase subdomain-containing protein [Trichophyton equinum
           CBS 127.97]
          Length = 2261

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 504 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKRERPDAIYV 563

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 564 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEVIGEKCAKSASAS 623

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 624 NLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAENDNQLRE--LCTKAFAASPQVLIERSM 681

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 682 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 740

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 741 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 790


>gi|317503677|ref|ZP_07961694.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella salivae
           DSM 15606]
 gi|315665198|gb|EFV04848.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella salivae
           DSM 15606]
          Length = 387

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 71/234 (30%), Gaps = 12/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++   +    PD+    +      + L       +++  +   +  +            
Sbjct: 55  DALAAAVEKHCPDIIVPEIE-AIRTERLFDFEQRGIQVVPSAKAVNFTMNRRAIRDLASR 113

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                               +   I  P V+KPL   S  G   +  D  +     ++  
Sbjct: 114 ELGLRTAKYYYAKTFVEFKQAADEIGFPCVVKPLMSSSGHGQSYVHNDNELQAAFHEAME 173

Query: 160 WNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              GD  +++IE+++D       +        T    P         + S        P 
Sbjct: 174 EGRGDVKEVIIEEFIDFDSEFTLLTVTQKNAPTIFCPPIGHV-----QKSGDYRESWQPF 228

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +P +   + Q +A    +A+   GI   +F       +V + E++ +P   GM
Sbjct: 229 CLPDEALSQAQHMANEVTKALEGYGIWGVEFFLTKQ-GEVIFSELSPRPHDTGM 281


>gi|323341488|ref|ZP_08081729.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus ruminis
           ATCC 25644]
 gi|323091099|gb|EFZ33730.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus ruminis
           ATCC 25644]
          Length = 459

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHL-------KP-DLAFN-------------- 56
              +L++ G K   I       S+ + LA         KP D   N              
Sbjct: 17  IIRSLKELGIKSVAIYSTVDRESLHVQLADEAVCVGSAKPQDSYLNMKNILAAAIGTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + E   I +        +L  +K  ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENNRFVEMCESCGITFIGPKSETISLMGNKANARIQMQQSGVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    +  P ++K   GG   GI  +  ++ +     ++            
Sbjct: 137 FIDNVEEAREIAEKVGYPVLLKAAAGGGGKGIRRVNNEEELTNAYEEARREALSAFGDSR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++ I      +                     ++ +        P   +  +  K++ 
Sbjct: 197 MYLEKIMENVKHIEVQVFRDEFGHSVYFPERDCSIQRNKQKMIEESPCSLVTPEQRKQLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A  AI  R     +FL D  + + +++E+N +
Sbjct: 257 EIAVRAVDAIDYRNTGTIEFLMD-KNHRFYFMEMNTR 292


>gi|92117712|ref|YP_577441.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nitrobacter
           hamburgensis X14]
 gi|91800606|gb|ABE62981.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrobacter hamburgensis X14]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHGLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I  +   M     I  P ++K   GG   G+ + K    + + +  + +        
Sbjct: 135 DGGIGPDHDAMAIAKAIGFPVLVKAAAGGGGRGMKIAKTPDDLMMAISTAGNEARAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L                L+          P+ +     +  
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPVLTAAARNK 254

Query: 228 QRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  A + I   G+   +FL+     K +++E+N +
Sbjct: 255 IGETVARAMREIQYLGVGTIEFLY--EDGKFYFIEMNTR 291


>gi|42520307|ref|NP_966222.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410045|gb|AAS14156.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 691

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/212 (11%), Positives = 69/212 (32%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      L+   I +         ++ +K+ +K+     GV V P  +      
Sbjct: 86  YGFLAENPDFPRALQKHNIDFIGPSAETIEVTANKITAKEAARKAGVNVVPGYMGKISNA 145

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    +  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 146 AHAAQVAKEVGFPVMLKAASGGGGKGMRIVNSKKEIELAFTSATNEAEKSFKDGSIFIEK 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++   +    
Sbjct: 206 YIELPRHIEIQIIADKYGNIVCLGERECSIQRNNQKIIEETPSPFISEEVRQKMYVQCVS 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +G       +F+ D   +  ++LE+N +
Sbjct: 266 LAKQVGYFSAGTVEFVVD-QDQNFYFLEVNTR 296


>gi|313886334|ref|ZP_07820059.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           asaccharolytica PR426713P-I]
 gi|312924203|gb|EFR34987.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           asaccharolytica PR426713P-I]
          Length = 1074

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/302 (14%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G K   I+ +                       V  V+   +PD    
Sbjct: 29  SGSQALKAVKAEGIKTVLINPNIATVQTSEGVADAVYFLPVTPYFVERVIERERPDGIML 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   I    + +     + D+    + +    V    S  
Sbjct: 89  AFGGQTALNCGVQLFQSGVLERYGIDVLGTPVETIMATEDRELFVEKLDEIEVKTIQSHA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P +++       LG      D+ +   +L   ++    QLLIE+
Sbjct: 149 VTTMEDALVAANQLGYPVIVRAAYALGGLGSGFCDNDEELR--VLAEKAFAFSPQLLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  D Y +++ +
Sbjct: 207 SLRGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNDEYHKLRTI 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  DP S     +E+N +  ++  S     +   GY    +  
Sbjct: 266 AIKIIRHLGVVGECNVQYALDPYSEDYRVIEVNAR--LSRSS--ALASKATGYPLAHVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KL 323


>gi|254442918|ref|ZP_05056394.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobiae
           bacterium DG1235]
 gi|198257226|gb|EDY81534.1| acetyl-CoA carboxylase, biotin carboxylase [Verrucomicrobiae
           bacterium DG1235]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/284 (16%), Positives = 87/284 (30%), Gaps = 42/284 (14%)

Query: 19  GKACASALEDAGFKVSQIDVD---RSVGLVLAHL--------------KPDLAFNVLH-- 59
                 A  + G K   +  +    S+ + LA                + D   +     
Sbjct: 13  ALRIVRACRELGIKSLAVYSEADIESLHVQLADEAICIGKAPSSESYLRADRIISAAEIA 72

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+       E   I +      +     DK  +K+ V    VPVC  
Sbjct: 73  DVDAIHPGYGFLSENADFAEQCESCNIKFIGPSAESIRKMGDKAVAKETVQKVKVPVCGG 132

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WN 161
               I            +  P +IK + GG   G+ +   D S+  +   + +     + 
Sbjct: 133 SDGVIASEEEASKIAKKVGYPVIIKAVAGGGGKGMRIAHNDVSLRKEFHIARNEADKAFG 192

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +GD  + +   +   +   V+ D+  +V  +            +             +  
Sbjct: 193 NGDVYVEKYIQNPRHIEFQVLADSHGNVVHLGERDCSVQ----RRHQKLIEEAPSPFLSQ 248

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + KE+   A  A +A    G    +FL D    K ++LE+N +
Sbjct: 249 KLRKEMGDAAVRATKAANYEGAGTIEFLVDDK-GKYYFLEMNTR 291


>gi|169828996|ref|YP_001699154.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lysinibacillus
           sphaericus C3-41]
 gi|168993484|gb|ACA41024.1| Biotin carboxylase [Lysinibacillus sphaericus C3-41]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI V + ++ +   +  +             Y++      
Sbjct: 145 WAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIDITQKEAAAAFGNPGVYLEKFIEYF 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
                  L      V         ++          P+     +   E+   A  A QA 
Sbjct: 205 RHCEIQILADGYGNVVHLGERDCTVQRRMQKLVEEAPSPALSSERRAEMGAAAVKAAQAC 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F++D    K +++E+N +
Sbjct: 265 DYEGAGTIEFIYDYQEDKFYFMEMNTR 291


>gi|218526206|gb|ACK86510.1| carbamoyl-phosphate synthase [Mucroberotha vesicaria]
          Length = 725

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 128 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPNGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + +      V    +
Sbjct: 188 TFGGQTALNCGVELEKANVFEKYGCKILGTPIQSIIETEDRKIFAEKIHEIGEKVAPSAA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG       + +    L + ++ + +QL+I++
Sbjct: 248 VHSVQEALEAAENIGYPILCRAAFSLGGLGSGFAHNKEQLVK--LATQAFANSNQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AISVIRHFGVVGECNIQYALSPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|189502115|ref|YP_001957832.1| hypothetical protein Aasi_0716 [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497556|gb|ACE06103.1| hypothetical protein Aasi_0716 [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 454

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/262 (14%), Positives = 85/262 (32%), Gaps = 34/262 (12%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H   G   E+     I +  +I +      + +   DK  +K  +   GVP  P   
Sbjct: 76  NAIHPGYGFLSENSSFSRICQEHDIKFIGPSPESISKMGDKATAKDTMKKAGVPTIPGSD 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
             +      +     I  P ++K   GG   G+ +++   +      ++       + + 
Sbjct: 136 GLLTSLEQGLVLAQEIGFPIILKATAGGGGKGMKIVQHADAFAKAWDEARREAQAAFGND 195

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              L +       +   +M D    V  ++           +             I  ++
Sbjct: 196 GLYLEKLIEAPRHIEIQLMADQHGRVVHLSERDCSIQ----RRHQKLVEETPSPFITEEL 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMA 278
            +++ + A      IG  G+   +FL D      +++E+N       P +T         
Sbjct: 252 REQMGQAAITGAACIGYEGVGTVEFLVDKHRN-FYFMEMNTRIQVEHP-ITE-------- 301

Query: 279 AYAGYSFRELLLWMVEDASCLR 300
              G    +L+   ++ A+  +
Sbjct: 302 EVTGI---DLIKEQIKIAAGEK 320


>gi|168005736|ref|XP_001755566.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162693273|gb|EDQ79626.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 497

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   + +      +  +  DK  +++ +   GVP  P     +   
Sbjct: 125 YGFLAENATFVDMCKDHGLNFIGPNSDSIRVMGDKATARETMKKAGVPTVPGSEGLVQST 184

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   H I  P +IK   GG   G+ +  +       L Q+ S     + +    L  
Sbjct: 185 EEAVRLAHEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQARSEAGAAFGNDGVYLER 244

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 245 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 300

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 301 AAVAAAASIGYIGVGTVEFLLDE-GGNFYFMEMNTR 335


>gi|126653051|ref|ZP_01725186.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
 gi|126590152|gb|EAZ84276.1| acetyl-CoA carboxylase [Bacillus sp. B14905]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI V + ++ +   +  +             Y++      
Sbjct: 145 WAAKIGYPVIIKATAGGGGKGIRVARTEEDLVKGIDITQKEAAAAFGNPGVYLEKFIEYF 204

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
                  L      V         ++          P+     +   E+   A  A QA 
Sbjct: 205 RHCEIQILADGYGNVVHLGERDCTVQRRMQKLVEEAPSPALSSERRAEMGAAAVKAAQAC 264

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +F++D    K +++E+N +
Sbjct: 265 DYEGAGTIEFIYDYQEDKFYFMEMNTR 291


>gi|53720592|ref|YP_109578.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei K96243]
 gi|76811288|ref|YP_334872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1710b]
 gi|126438887|ref|YP_001060477.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126454467|ref|YP_001067741.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1106a]
 gi|134280032|ref|ZP_01766743.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|167721286|ref|ZP_02404522.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei DM98]
 gi|167740255|ref|ZP_02413029.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 14]
 gi|167817473|ref|ZP_02449153.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 91]
 gi|167825879|ref|ZP_02457350.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 9]
 gi|167847362|ref|ZP_02472870.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei B7210]
 gi|167895950|ref|ZP_02483352.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 7894]
 gi|167904336|ref|ZP_02491541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei NCTC 13177]
 gi|167920548|ref|ZP_02507639.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei BCC215]
 gi|217420966|ref|ZP_03452471.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|226196852|ref|ZP_03792431.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237813871|ref|YP_002898322.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242317584|ref|ZP_04816600.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254180593|ref|ZP_04887191.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|254190970|ref|ZP_04897476.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|254199056|ref|ZP_04905471.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
 gi|254262087|ref|ZP_04953141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
 gi|254299320|ref|ZP_04966770.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|52211006|emb|CAH36994.1| biotin carboxylase [Burkholderia pseudomallei K96243]
 gi|76580741|gb|ABA50216.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1710b]
 gi|126218380|gb|ABN81886.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126228109|gb|ABN91649.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1106a]
 gi|134248039|gb|EBA48122.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|157808987|gb|EDO86157.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 406e]
 gi|157938644|gb|EDO94314.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|169656886|gb|EDS88283.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei S13]
 gi|184211132|gb|EDU08175.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|217396378|gb|EEC36395.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|225931112|gb|EEH27120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei Pakistan 9]
 gi|237503919|gb|ACQ96237.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|242140823|gb|EES27225.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1106b]
 gi|254220776|gb|EET10160.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SDGALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|156088169|ref|XP_001611491.1| carbamoyl phosphate synthetase [Babesia bovis]
 gi|154798745|gb|EDO07923.1| carbamoyl phosphate synthetase [Babesia bovis]
          Length = 1632

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/337 (13%), Positives = 97/337 (28%), Gaps = 57/337 (16%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GGIS     E +    SG     AL+++G +V  ++ +                      
Sbjct: 496 GGISIGQAGEFD---YSGSQAIKALKESGAEVILVNPNVATVQTNHGLADVVYFEPITAE 552

Query: 41  SVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            V  ++   +PD       G      G D     IL         + I     + D+   
Sbjct: 553 FVSNIIEKERPDGIMCSFGGQTALNCGIDLYKSGILSKYNCEVLGTPIETIINTEDRALF 612

Query: 97  KQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + ++  G    PS         + +   +  P +++        G  +   +  +   L
Sbjct: 613 NRKLAEIGERCAPSKVGTDVGSCISAAQELGYPVLVRTNYALGGFGSGLASDESELRSIL 672

Query: 155 LQSSSWNHGDQLLIEQYVDG-----IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
               S +   +   +    G           V  D +L   +    +    + +   S  
Sbjct: 673 SNIFSTSSCRKGGSDTTEAGSGSSFPVEDVCVYIDKALKGWKEIEFEIIRDNNDNCISPA 732

Query: 210 NSTHVLPAKIP--------------LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
           +  +  P  I                    + + +AF   + +G  G     F  +P + 
Sbjct: 733 SMENFDPLGIHTGDSIVVAPAQTLTNVELYKYREIAFKIVRHLGIVGECNVQFAVNPDTD 792

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F +E+N +  ++  S     +   GY        +
Sbjct: 793 DYFIVELNAR--LSRSS--ALASKATGYPLAYFAARI 825



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 95/313 (30%), Gaps = 37/313 (11%)

Query: 1    MAVL-MG----GISSEREVSLSSGKACASALEDAGFKVSQI---------DVDRSVGLVL 46
            + VL  G    G S E +    S  +C  AL   G     +         D D S  L  
Sbjct: 1071 IVVLGCGPYRIGSSIEFD---WSAVSCVKALRSLGHAAVIVNCNPETVSTDYDVSDRLYF 1127

Query: 47   AHLKPDLAFNVLH------------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKM 94
              L  ++   + H            G    +   +     L I  T    +    + +K 
Sbjct: 1128 DELTVEIVDAIYHFENPKGIVISVGGQTANNLACKLHSLGLSILGTSVESIDRCENRNKF 1187

Query: 95   RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 V     P                 +S P +++P    S   + VI   + +   L
Sbjct: 1188 SKLCDVLGIDQPAWEEFTSFEGAKQFCTKVSFPVLVRPSYVLSGASMRVIVSFEELEKYL 1247

Query: 155  LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
              S+  N    ++I ++++       V    +     +    S+   +   +S   +  +
Sbjct: 1248 QTSAVVNREHPVVISKFIE-KANEVEVDCV-ASQGIILNYAISEHVEHAGTHSGDATLIL 1305

Query: 215  LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
                I +  ++ V+++     + +   G     +L    + ++  +E N    +      
Sbjct: 1306 PAQNIFVGTHRRVKKITQKLSRYLNISGPFNVQYLC--KNNEIKIIECN----LRASRTL 1359

Query: 275  PEMAAYAGYSFRE 287
            P +      +F +
Sbjct: 1360 PFIYKTLNVNFID 1372


>gi|149370134|ref|ZP_01889985.1| acetyl-CoA carboxylase, biotin carboxylase [unidentified
           eubacterium SCB49]
 gi|149356625|gb|EDM45181.1| acetyl-CoA carboxylase, biotin carboxylase [unidentified
           eubacterium SCB49]
          Length = 491

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/247 (16%), Positives = 85/247 (34%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    S    L   K      D   + +H   G   E+ +   +     I +    
Sbjct: 46  EAVLLGPAPSAESYLVMEKVIQAAKDTGADAIHPGYGFLSENAVFAKMATAAGITFIGPK 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  +K+ +K+ V+S  +P+ P I      +     IS     P +IK   GG   
Sbjct: 106 PQSIEVMGNKLAAKEAVNSYNIPMVPGIEEAITDIKLAEKISKEIGFPILIKASAGGGGK 165

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V++  Q +P  + ++ S           +++    +   +    L  T   +     
Sbjct: 166 GMRVVENLQELPEQMERAISEAKAAFGDGSVFIEKYVGSPRHIEIQVLADTHGNIIHLFE 225

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P+ +   +I + +   A    +A    G    +FL D      +
Sbjct: 226 RECSIQRRHQKVVEEAPSAVLTPEIREAMGDAAIKVAKACDYVGAGTVEFLLDENKN-FY 284

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 285 FLEMNTR 291


>gi|116073803|ref|ZP_01471065.1| acetyl-CoA carboxylase [Synechococcus sp. RS9916]
 gi|116069108|gb|EAU74860.1| acetyl-CoA carboxylase [Synechococcus sp. RS9916]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/148 (13%), Positives = 45/148 (30%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ +     +  ++       +    G+  L  +       
Sbjct: 149 AEEMGYPVMIKATAGGGGRGMRLVPGPDQLHTLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  ++ + +   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPELRRRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 IQYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|1066857|gb|AAA81578.1| acetyl-CoA carboxylase [Glycine max]
          Length = 1978

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 61/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  +     +     +      + S  ++  P +IK    G   G
Sbjct: 177 PTLPWSGSHVKIPPESSLITIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWRGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSI 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P     +  K++++ A    +++   G +  ++LF   + + ++
Sbjct: 297 QRRYQKIIEEGPITVAPI----ETVKQLEQAARRLAKSVNYVGAATVEYLFSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|66807109|ref|XP_637277.1| methylcrotonyl-CoA carboxylase [Dictyostelium discoideum AX4]
 gi|74853044|sp|Q54KE6|MCCA_DICDI RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|60465677|gb|EAL63756.1| methylcrotonyl-CoA carboxylase [Dictyostelium discoideum AX4]
          Length = 699

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/182 (14%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++++++ +   +  S              V+   +   
Sbjct: 176 AAKIGYPVLIKAVMGGGGKGMRIVEREEDLEDGVESSKREATASFGDSRVLVEKYLVHPR 235

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     ++ K++   A  A +A+G
Sbjct: 236 HVEIQVFADRHGNCVHLFERDCSVQRRHQKIIEEAPAPHLSEELRKKMGDAAVAAAKAVG 295

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+        F++E+N       P +T +            + ++L+ W ++
Sbjct: 296 YVGAGTVEFILSA-DNSFFFMEMNTRLQVEHP-ITEM-----------ITKQDLVEWQLK 342

Query: 295 DA 296
            A
Sbjct: 343 VA 344


>gi|67923410|ref|ZP_00516889.1| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii
           WH 8501]
 gi|67854745|gb|EAM50025.1| Acetyl-CoA carboxylase, biotin carboxylase [Crocosphaera watsonii
           WH 8501]
          Length = 452

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+     I    +I +      +     DK  +K+ +   GVP  P    
Sbjct: 79  AIHPGYGFLAENARFAEICADHQIVFIGPSPESIRSMGDKSTAKKTMQKAGVPTVPGSWG 138

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   ++    I  P +IK   GG   G+ +++++         +            
Sbjct: 139 LLQSEEEALNVARDIGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFGNGG 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++          P+ +    + K++ 
Sbjct: 199 VYLEKFIERPRHIEFQILADSHGNVIHLGERDCSIQRRHQKLLEEAPSPVLTPQLRKKMG 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A ++I   G    +FL D    K +++E+N +
Sbjct: 259 EAAVKAAKSIKYVGAGTVEFLVDNQ-GKFYFMEMNTR 294


>gi|289209403|ref|YP_003461469.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
 gi|288945034|gb|ADC72733.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 AREIGYPVIIKAAAGGGGRGMRVVHTEGALLHSISLTRNEAQQGFGNDTLYMEKYLEHPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAIG 239
            +    L  +             ++          PA    D  ++        A Q IG
Sbjct: 209 HVEFQILSDSHGNAICLGERDCSMQRRHQKVIEEAPAPGITDEQRQAMSERLVRACQEIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|156848917|ref|XP_001647339.1| hypothetical protein Kpol_1018p8 [Vanderwaltozyma polyspora DSM
           70294]
 gi|156118025|gb|EDO19481.1| hypothetical protein Kpol_1018p8 [Vanderwaltozyma polyspora DSM
           70294]
          Length = 2231

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 72/232 (31%), Gaps = 9/232 (3%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +   L   K  + F    GN       +    ++        I  S   +DK+    
Sbjct: 156 NPHLPEKLTQSKRKVIFIGPPGNAMRSLGDKISSTIVAQHAKVPCIPWSGTGVDKVHIDD 215

Query: 99  VVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 V           + +        I  P +IK  +GG   GI  +++++      
Sbjct: 216 QTGLVSVDDDIYEKGCCSSPEDGLVKAKKIGFPVMIKASEGGGGKGIRKVEREEDFVSLY 275

Query: 155 LQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            Q+++   G  + I +   +   L   ++ D       +            K        
Sbjct: 276 HQAANEIPGSPIFIMKLAGNARHLEVQLLADQYGTNISLFGRDCSVQRRHQKIIEEAPVT 335

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + P     +    +++ A    + +G       ++L+     K ++LE+N +
Sbjct: 336 IAPNVTFTE----MEKAAVRLGKLVGYVSAGTVEYLYSHEDDKFYFLELNPR 383


>gi|146307716|ref|YP_001188181.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           mendocina ymp]
 gi|145575917|gb|ABP85449.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas mendocina ymp]
          Length = 661

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   +  + S         E  ++   +   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVQESSELLGQIRTARSEAQNAFGSGELILERAVIRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +           +         ++          P   +  ++ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDQHGNILYLGERDCSVQRRHQKVVEEAPCPVMTPELRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S + F+LE+N +
Sbjct: 270 YVGAGTVEFLLDA-SGEFFFLEMNTR 294


>gi|9971929|gb|AAG10491.1|AF279106_53 predicted acetyl-CoA carboxylase, biotin carboxylase [uncultured
           marine gamma proteobacterium EBAC31A08]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/213 (13%), Positives = 64/213 (30%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
           +G   ED     + E     +            DK+ +K +    G+ + P         
Sbjct: 82  YGFLAEDHNFAEMCEKSGFKFIGPTSETIQKMGDKITAKTLAEKSGIQIVPGYKDEIPSD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           N         I  P +IK   GG   G+ V+++++ +      +             Y++
Sbjct: 142 NDEFKKIARDIGYPIMIKATAGGGGRGMRVVEREEDLIGHAEITMQEAKNGFGNETIYLE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAF 232
                   +    +   +            ++          PA  I  +   +      
Sbjct: 202 KFIGNPRHIEVQIVGDGKGKAIHLGTRDCSMQRRHQKIIEEAPALNINQEALNKTLIACV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + I   G+   +FL+     + +++E+N +
Sbjct: 262 NLCEEINYEGVGTIEFLY--EDNQFYFIEMNTR 292


>gi|319778582|ref|YP_004129495.1| Biotin carboxylase of acetyl-CoA carboxylase [Taylorella
           equigenitalis MCE9]
 gi|317108606|gb|ADU91352.1| Biotin carboxylase of acetyl-CoA carboxylase [Taylorella
           equigenitalis MCE9]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +IK   GG   G+ V+  + ++   +  + +         E Y++       
Sbjct: 149 ANRVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTKTEALAAFGNPEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  D+ +++      A + + 
Sbjct: 209 HIEIQVLGDGLGQAVWLWERDCSMQRRHQKVIEEAPAPGIDRDLIEKIGERCVKACKNMK 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGQFYFIEMNTR 292


>gi|258511751|ref|YP_003185185.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
 gi|257478477|gb|ACV58796.1| acetyl-CoA carboxylase, biotin carboxylase [Alicyclobacillus
           acidocaldarius subsp. acidocaldarius DSM 446]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/256 (16%), Positives = 79/256 (30%), Gaps = 24/256 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+       E   I +      A  L  DK  +K  +   GVP  P  
Sbjct: 76  DAVHPG-YGFLSENSDFAEACEACGITFIGPSPRAIELMGDKSTAKMTMRRAGVPTVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      +   + I  P +IK   GG   GI V++ +  +     Q+          
Sbjct: 135 EGLVESLEEALAIANAIGYPLIIKATAGGGGRGIRVVRDEPELRKAYDQARREAEASFGN 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L      V         ++          P  +  +  ++ 
Sbjct: 195 PGIYIEKYIERMRHVEIQILADRHGNVIHLGERDCSVQRRLQKLVEESPCPVMTEEKRQE 254

Query: 228 Q-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
               A  A +A+   G    +F++ P     +++E+N       P +T            
Sbjct: 255 MGDAAVRAARAVDYVGAGTVEFIYTP-DGDFYFMEMNTRIQVEHP-VTEW--------VT 304

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+  M+  A+
Sbjct: 305 GV---DLVREMILAAA 317


>gi|255692931|ref|ZP_05416606.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
 gi|260621242|gb|EEX44113.1| putative carbamoyl-phosphate synthase [Bacteroides finegoldii DSM
           17565]
          Length = 369

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 95/269 (35%), Gaps = 22/269 (8%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + +S +D    + ++    K +       G       +                +   ++
Sbjct: 46  YDISIVD-KEQIAVICQKEKIN-------GIISNALEIAVPTAAYVAELLDLNGIPYEVA 97

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++     Q+                           P ++KP+ G  S G+  + K + +
Sbjct: 98  LNARNKFQMREKVSHQKACQQPTYTLYQSGYLPSFYPVIVKPIDGSCSNGVTKVNKREDL 157

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L ++S  +  + +LIE+Y++G E++   +   S         K    +       + 
Sbjct: 158 TQALNRASQASLANCILIEEYIEGKEVSVESISFHSKHYVLTITDKETTGA----PYFVE 213

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEINVQPG-- 267
           + H  P+ + LDI ++++        AIG   G S ++F  D  +  +F++E+  + G  
Sbjct: 214 TAHHQPSTLSLDIQEKLKYATCNILNAIGINNGASHTEFKID-QNGNIFFIEVGARGGGD 272

Query: 268 MTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
                +        GY +   +  M+E A
Sbjct: 273 FISYDLVKLS---TGYDY---VKGMIEVA 295


>gi|53726118|ref|YP_104048.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei ATCC 23344]
 gi|67643586|ref|ZP_00442331.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|121598446|ref|YP_991773.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei SAVP1]
 gi|124383372|ref|YP_001027266.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126450043|ref|YP_001082798.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|166998584|ref|ZP_02264442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
 gi|254179028|ref|ZP_04885682.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 10399]
 gi|254202767|ref|ZP_04909130.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|254208109|ref|ZP_04914459.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|52429541|gb|AAU50134.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 23344]
 gi|121227256|gb|ABM49774.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           SAVP1]
 gi|124291392|gb|ABN00661.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126242913|gb|ABO06006.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|147747014|gb|EDK54091.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|147752003|gb|EDK59070.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|160694942|gb|EDP84950.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           ATCC 10399]
 gi|238524958|gb|EEP88388.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243065268|gb|EES47454.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SDGALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|330964070|gb|EGH64330.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. actinidiae str. M302091]
          Length = 380

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGVAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIELEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSVDDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        ++G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIIEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPA 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|319791696|ref|YP_004153336.1| acetyL-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
 gi|315594159|gb|ADU35225.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           EPS]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 ARAIGYPVIIKAAGGGGGRGMRVVHTEAALVNAIQMTKAEAGAAFSNPAVYMEKFLQNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  IP  + +++      A + IG
Sbjct: 209 HIEIQILADKHKNAVYLGERDCSMQRRHQKVIEESPAPGIPRKLIEKIGERCAAACKKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|261855969|ref|YP_003263252.1| acetyl-CoA carboxylase, biotin carboxylase [Halothiobacillus
           neapolitanus c2]
 gi|261836438|gb|ACX96205.1| acetyl-CoA carboxylase, biotin carboxylase [Halothiobacillus
           neapolitanus c2]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 73/218 (33%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+      +E     +         +  DK+ +K+ + +  VP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFIFIGPTPENIRMMGDKVTAKETMRAANVPCVPGSDG 136

Query: 114 NRFTMDSQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                  ++      +  P +IK   GG   G+ V+  + ++   +  + S         
Sbjct: 137 ALGDDPDENLRLGREVGYPVIIKAAGGGGGRGMRVVHTEAALLHAIEMTRSEAQAAFNNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEV 227
           + Y++        +    L  T             ++          PA  +  +   E+
Sbjct: 197 QVYMEKFLEHPRHVEIQILADTHGNAIYLGERDCSMQRRHQKIIEEAPAPGVTPEQRAEI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +   A Q +G RG    +FL+   +   +++E+N +
Sbjct: 257 GAVCVAACQRMGYRGAGTFEFLY--ENGNFYFIEMNTR 292


>gi|126728930|ref|ZP_01744745.1| propionyl-CoA carboxylase, alpha subunit [Sagittula stellata E-37]
 gi|126710860|gb|EBA09911.1| propionyl-CoA carboxylase, alpha subunit [Sagittula stellata E-37]
          Length = 666

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D         S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWNDSEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGC 240
           +    L          +     ++  +       P+     +  K +   +    +A+G 
Sbjct: 209 IEIQVLCDAHGNGIYLNERECSIQRRNQKVVEEAPSPFLDAETRKAMGEQSVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 TSAGTVEFIVDGEKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|124028019|ref|YP_001013339.1| pyruvate carboxylase subunit A [Hyperthermus butylicus DSM 5456]
 gi|123978713|gb|ABM80994.1| pyruvate carboxylase subunit A [Hyperthermus butylicus DSM 5456]
          Length = 491

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 79/275 (28%), Gaps = 33/275 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSV-----------GLVLAHLKPDLAFNV--------LH 59
               A A+ + G++   I                  +V ++  PD             LH
Sbjct: 14  AIRIARAVRELGWEPITIYAPDDAHSPHVRAGTFSVMVESYTNPDSVVEAAIKAGADILH 73

Query: 60  ---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP--VCPSILVN 114
              G   ED      +    I +         L  DK R+KQ+    GVP          
Sbjct: 74  PGYGFLSEDPSFARKVLDAGISWAGPKPETMELLGDKHRAKQLAEKVGVPTPPWCEARSA 133

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL------QSSSWNHGDQLLI 168
              +     I  P ++K  K G   G+ V    + +           ++   + G   + 
Sbjct: 134 EEAVRCAERIGYPVMLKASKAGGGRGMRVASNSEEVRRAYRLVSLEARNGFGDAGVVYIE 193

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++GD    V  +   +        K      +     +    +   + 
Sbjct: 194 KYVRNPRHIEVQILGDGQGHVVHLYERECSIQRRRQKIIEEAPSPFA--EKVPQVRSRLV 251

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             A    +    +     +F+ D    + +++E N
Sbjct: 252 DYALRLAEEAEYQSAGTIEFIVDER-GQPYFIEAN 285


>gi|572606|emb|CAA54683.1| acetyl-CoA carboxylase [Brassica napus]
          Length = 2304

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 274 PTLPWSGSHVKIPPGSSLVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 333

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 334 IRKVHDDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 393

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 394 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 449

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 450 LELNPR 455


>gi|74272305|gb|ABA01007.1| acetyl-coenzyme A carboxylase [Brassica rapa var. perviridis]
          Length = 1065

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 12  PTLPWSGSHVKIPPGSSLVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 71

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 72  IRKVHDDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 131

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 132 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 187

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 188 LELNPR 193


>gi|74272303|gb|ABA01006.1| acetyl-coenzyme A carboxylase [Brassica rapa subsp. chinensis]
          Length = 1063

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 10  PTLPWSGSHVKIPPGSSLVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 69

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 70  IRKVHDDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 129

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 130 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 185

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 186 LELNPR 191


>gi|74272301|gb|ABA01005.1| acetyl-coenzyme A carboxylase [Brassica rapa]
          Length = 1065

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 12  PTLPWSGSHVKIPPGSSLVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 71

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 72  IRKVHDDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 131

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 132 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 187

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 188 LELNPR 193


>gi|74272299|gb|ABA01004.1| acetyl-coenzyme A carboxylase [Brassica napus]
          Length = 1064

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 12  PTLPWSGSHVKIPPGSSLVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 71

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 72  IRKVHDDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 131

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 132 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 187

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 188 LELNPR 193


>gi|87120517|ref|ZP_01076411.1| acetyl-CoA carboxylase [Marinomonas sp. MED121]
 gi|86164160|gb|EAQ65431.1| acetyl-CoA carboxylase [Marinomonas sp. MED121]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKPDLAFN------------------- 56
                 A ++ G K   +   +D  +  V LA     +  N                   
Sbjct: 14  ALRILRACKELGIKTVAVHSKIDSDLLHVRLADESICIGPNPSAKSYLNIPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  DSSAIHPGYGFLAENADFAEQVENSGFAFIGPKAETIRLMGDKVSAIVAMRKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V+  + S+   +  + S      
Sbjct: 134 SNGPVPSDENECKRIALEIGYPIIVKAAAGGGGRGMRVVHDEDSLLKSISITQSEAGSYF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
                Y++        +    L   +            L+          PA     +  
Sbjct: 194 GDSTVYMEKFLTNPRHVEVQVLADGQGNAVHLYDRDCSLQRRHQKVLEEAPAPHLDPESR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +    A   I  RG    +FL+     + +++E+N +
Sbjct: 254 AACLQACVDACIEINYRGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|309799750|ref|ZP_07693965.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           SK1302]
 gi|308116639|gb|EFO54100.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus infantis
           SK1302]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  + K +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEATGKFYFMEMNTR 293


>gi|28868675|ref|NP_791294.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|81732019|sp|Q886V7|PURT_PSESM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|28851914|gb|AAO54989.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|331016297|gb|EGH96353.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. lachrymans str. M302278PT]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIELEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        ++G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIIEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPA 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +++G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTESLGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|71275504|ref|ZP_00651790.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Dixon]
 gi|71900752|ref|ZP_00682873.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|170729287|ref|YP_001774720.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa M12]
 gi|71163804|gb|EAO13520.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Dixon]
 gi|71729482|gb|EAO31592.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|167964080|gb|ACA11090.1| biotin carboxylase [Xylella fastidiosa M12]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V+  +  +   +  +           
Sbjct: 137 PLGDDIVANVKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQCEAKAAFGNG 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y++        +    L   +            ++          PA    + +  E+
Sbjct: 197 QVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEALRNEI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A   IG RG    +FLF   + + +++E+N +
Sbjct: 257 GQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|239813957|ref|YP_002942867.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
 gi|239800534|gb|ACS17601.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + +     +++    + +   +  
Sbjct: 149 ARAIGYPVIIKAAGGGGGRGMRVVHTEAALINAIQMTKAEAGAAFSNPAVYMEKFLQNPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D   +   +            K    +    +P      + +++      A 
Sbjct: 209 HVEIQILADKHKNAVYLGERDCSMQRRHQKVIEESPAPGIPR----KLIEKIGERCAAAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG RG    +FL+   + + +++E+N +
Sbjct: 265 KKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|213019546|ref|ZP_03335352.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
 gi|212994968|gb|EEB55610.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus JHB]
          Length = 629

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 80/272 (29%), Gaps = 25/272 (9%)

Query: 14  VSLSS------GKACA-SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN-----VLH-- 59
           +S  S        +      +++      I    +    L   K            +H  
Sbjct: 3   ISCVSVYSDADANSVHVKQADESRH----IGPSPAYLSYLNIEKICEVAVETGAEAVHPG 58

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G   E+      LE   I +         ++ +K+ +K+     GV V P  +      
Sbjct: 59  YGFLAENPDFPRALEKHNIDFIGPSAETIEVTANKITAKEEARKAGVNVVPGYMGKIEDA 118

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 119 AHAAIVAEEIGFPVMLKAASGGGGKGMRIVYSKKEIELAFTSATNEAEKSFKDGSIFIEK 178

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++        
Sbjct: 179 YIELPRHIEIQIIADKYGNIVCLGERECSVQRNNQKIIEETPSPFISEEVRQKMYAQCVS 238

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +        +F+ D  ++  ++LE+N +
Sbjct: 239 LAKQVDYFSAGTVEFVVD-KNQNFYFLEVNTR 269


>gi|150391116|ref|YP_001321165.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
 gi|149950978|gb|ABR49506.1| carbamoyl-phosphate synthase, large subunit [Alkaliphilus
           metalliredigens QYMF]
          Length = 1075

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 100/294 (34%), Gaps = 37/294 (12%)

Query: 26  LEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVL------------HGNFGE 64
           L++ G +   I         D D S  L    L P+   N+              G    
Sbjct: 581 LKEQGIETIIINNNPETVSTDFDTSDKLYFEPLTPEDVINIAKMEDVEGVVVQYGGQTAI 640

Query: 65  DGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI 124
           +         ++I  T    +  A   +K     V  +        +   +   ++  ++
Sbjct: 641 NLTKPLHEAGIKILGTPPSGIDLAEDREKFSKLLVELNIPQSKGVMVSDIKEVEEAAKVL 700

Query: 125 SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGD 184
             P V++P        + +++ ++ +       + +N  + +L++QY+ G E+    + D
Sbjct: 701 GFPLVVRPSYVIGGQSMEIVRDEEELLYYANHLTDFNKYNAILMDQYILGKEVEVDGISD 760

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGI 243
               +     P    +       S +S  V P +   + + K++         A+G  G+
Sbjct: 761 GKEILI----PAIMEHIERAGVHSGDSMSVYPVQSLSEKVVKDIVDYTQKIAMALGVVGL 816

Query: 244 SRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAY----AGYSFREL 288
               ++      +V  +E N       P ++ V+  P +A       G + ++L
Sbjct: 817 INIQYVV--KDEQVMVIEANPRASRTVPIVSKVTRIPMVALATEVMMGKALKDL 868



 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/274 (12%), Positives = 87/274 (31%), Gaps = 28/274 (10%)

Query: 19  GKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNV 57
           G     +L + G +V  ++ +                     R++ L++   +P      
Sbjct: 30  GTQACKSLREEGVEVVLVNSNPATIMTDENIADHVYIEPLNTRAIELIIKAERPQGILPT 89

Query: 58  LHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSI 111
           L G  G +       + IL+   +    + +     + D+   K+ +      VP    +
Sbjct: 90  LGGQTGLNLAVALYEEGILQKYGVELLGTSVDTVKRAEDRQLFKETMEKLGHTVPKSAIV 149

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                 M     +  P +++P       G  +    + +   +++    +  +Q+LIEQ 
Sbjct: 150 AKVEEAMAFGEEVGYPLIVRPAYTLGGTGGGIALNQEELRGIVVRGLRLSMINQVLIEQS 209

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V   +     +     D         +F      ++  +        +  + Y+ ++  +
Sbjct: 210 VANWKEIEYEVMRDRNDNCITICNMENFDP-VGIHTGDSIVVAPSQTLRDEEYQMLRSAS 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               + +   G     F   P S     +E+N +
Sbjct: 269 IDIIRELKVEGGCNIQFALHPESLDYVVIEVNPR 302


>gi|117923700|ref|YP_864317.1| carbamoyl-phosphate synthase L chain, ATP-binding [Magnetococcus
           sp. MC-1]
 gi|117607456|gb|ABK42911.1| biotin carboxylase / biotin carboxyl carrier protein [Magnetococcus
           sp. MC-1]
          Length = 652

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/278 (11%), Positives = 70/278 (25%), Gaps = 38/278 (13%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V+     D      +G   E+      L+ + + +      A     DK+ SK++
Sbjct: 63  DKLLEVIKQCGADGVHPG-YGFLSENSTFCRRLQEMGVIFIGPNPTAIDAMGDKISSKKL 121

Query: 100 VSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
             +  V   P  +         +     I  P ++K   GG   G+ +   D        
Sbjct: 122 AQAANVNTIPGHMGIIENADEAVRIAAEIGYPVMLKASAGGGGKGMRIAHNDAEAAE--- 178

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
               W       +  + DG       + +      ++         Y  +          
Sbjct: 179 ---GWQSATNEGLSYFGDGRVFIEKFIENPRHIEIQVLCDGHGNGVYLNERECSIQRRNQ 235

Query: 216 PAKIPLDIYKEVQRLAFLAHQA-------IGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
                         +     +        +        +F+        ++LE+N +   
Sbjct: 236 KVIEEAPSPFVDADMRRAMGEQALALAQAVDYVSAGTIEFVVGADKG-FYFLEMNTR--- 291

Query: 269 TPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                      +       G    +L+  M+  A   R
Sbjct: 292 -------LQVEHPVTEFITGL---DLVEQMIRVARGER 319


>gi|302697433|ref|XP_003038395.1| hypothetical protein SCHCODRAFT_72682 [Schizophyllum commune H4-8]
 gi|300112092|gb|EFJ03493.1| hypothetical protein SCHCODRAFT_72682 [Schizophyllum commune H4-8]
          Length = 767

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 52/291 (17%), Positives = 91/291 (31%), Gaps = 38/291 (13%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   K  D+        +H   G   E+      LE   I +    
Sbjct: 122 EAYCIGPAPSADSYLRKDKIIDVCKRSSAQAVHPGYGFLSENAQFAEALENEGIVFIGPP 181

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A      K  SK ++S+  VP  P          F       I  P +IK + GG   
Sbjct: 182 ASAIVSMGSKSESKNIMSAASVPCVPGYHGDNQDPEFLFQQAQKIGFPVLIKAIHGGGGK 241

Query: 140 GIIVI-----KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+  +     +          + S    G+  ++ +          V   A      ++ 
Sbjct: 242 GMRTVTIPTAEAFYEALESAKRESQKAFGNDTVLVERYIQRPRHIEVQVFADSPGNAVS- 300

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                    ++  +       PA    D +  ++   A  A +A+  RG    +F+FD  
Sbjct: 301 --LWERDCSVQRRNQKIIEEAPAPGLSDRLRADLSEKAVAAAKAVHYRGAGTVEFIFDND 358

Query: 254 SRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
           +   +++E+N       P         EM    G    +L+ W +E A+  
Sbjct: 359 TEDFYFMEMNTRLQVEHP-------VTEM--VTGL---DLVEWQLEVAAGN 397


>gi|319764333|ref|YP_004128270.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
 gi|330826369|ref|YP_004389672.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans K601]
 gi|317118894|gb|ADV01383.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans BC]
 gi|329311741|gb|AEB86156.1| acetyl-CoA carboxylase, biotin carboxylase [Alicycliphilus
           denitrificans K601]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFQFIGPTPESIRMMGDKVSAKQAMIRAGVPCVPGSDGELPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PVQIRRIAKTIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAAFGNPAVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP  + +++     
Sbjct: 202 KFLQNPRHIEIQVLADKYRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRKLIEKIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 AACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|283954593|ref|ZP_06372112.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
 gi|283793997|gb|EFC32747.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 414]
          Length = 481

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/240 (15%), Positives = 83/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DVDR +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVDR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSLEEIKIFAEKIGYPIILKASGGGGGRGIRVVHKEQEL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|259906963|ref|YP_002647319.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|224962585|emb|CAX54040.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Erwinia
           pyrifoliae Ep1/96]
 gi|283476757|emb|CAY72595.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           pyrifoliae DSM 12163]
 gi|310766178|gb|ADP11128.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia sp.
           Ejp617]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPPPSVKSYLNIPALISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGERCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|89053554|ref|YP_509005.1| carbamoyl phosphate synthase large subunit [Jannaschia sp. CCS1]
 gi|88863103|gb|ABD53980.1| carbamoyl-phosphate synthase large subunit [Jannaschia sp. CCS1]
          Length = 1110

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/315 (9%), Positives = 82/315 (26%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPELADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLVQAI-------------------LELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +  +                      +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTSLALEEAGVLEKFGVEMIGAKRPAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                               +++   +  P +I+P       G  V    +         
Sbjct: 149 ITAPKGDDGKFDIAAGVAEAIEAIEYVGLPAIIRPAFTLGGTGGGVAYNREQYEFFCRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 MEASPMAQILVDESLLGWKEFEMEVVRDRADNAIIVCAIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAMNPEDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 57/162 (35%), Gaps = 10/162 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              +  P VI+P        + +++    +   +  +   +    +L++ Y+DG +E+  
Sbjct: 725 AEALGYPLVIRPSYVLGGRAMEIVRDTAQLDRYIRDAVVVSGDSPVLLDSYLDGAVEVDV 784

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D         +   +       +S  ++  + P  +   +   +        +A+G
Sbjct: 785 DALCDGEAVHVAGIMQHIEEAG---VHSGDSACSLPPHTLSEQVQTRIIAQTEALAKALG 841

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
             G+    F       K++ +E+N +   T     P +A   
Sbjct: 842 VVGLMNIQFAM--KEDKIYLIEVNPRASRT----VPFVAKAT 877


>gi|46199064|ref|YP_004731.1| biotin carboxylase [Thermus thermophilus HB27]
 gi|55981092|ref|YP_144389.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           thermophilus HB8]
 gi|46196688|gb|AAS81104.1| biotin carboxylase [Thermus thermophilus HB27]
 gi|55772505|dbj|BAD70946.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Thermus
           thermophilus HB8]
          Length = 445

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 49/145 (33%), Gaps = 2/145 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+  ++ +   +LQ+             Y++   +   
Sbjct: 146 AQEIGYPVILKASAGGGGRGMRVVHTEEELERAVLQAQEEARAAFGNPAVYLE-KYIEEP 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +  +      V         ++          P+ +P +  + +   A    + +G 
Sbjct: 205 KHIEIQVLGDGERVVHLWERDCSIQRRHQKLLEEAPSLLPEETRRAIAEAARRLAERVGY 264

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 +FL D      +++E+N +
Sbjct: 265 VSAGTMEFLVDKEGN-FYFIEMNTR 288


>gi|311694136|gb|ADP97009.1| phosphoribosylglycinamide formyltransferase 2 [marine bacterium
           HP15]
          Length = 396

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/284 (15%), Positives = 84/284 (29%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----RSV 42
           VL  G S E    L  GK     L+  G +V  +D                +D     S+
Sbjct: 18  VLFCG-SGE----L--GKEVVIELQRYGVEVIAVDRYADAPAMQVAHRSHVIDMLDGASL 70

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KPDL    +      + +         IP   +  L       +  + + +  
Sbjct: 71  RSVIEQEKPDLIVPEIEAIATPELVKLEEEGYRVIPTARAVNLTMNREGIRRLAAEELGL 130

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                          + + + I  P V+KP+   S  G   +K +  I        + + 
Sbjct: 131 PT-SPYRFAGTREEYLAAVNEIGLPLVVKPVMSSSGKGQSTVKTEDDIEAA--WEYAQSG 187

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        V+G       +   ++   +           +       S    P      
Sbjct: 188 GRAGKGRVIVEGFVDFDYEITLLTVKHRDGVSFCEPIGHRQEDGDYRESWQPQPMAPLA- 246

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            Y+    +A    + +G  GI   +      +  V++ E++ +P
Sbjct: 247 -YERSAEVARAVVENLGGYGIYGVELFVKEDN--VWFSEVSPRP 287


>gi|259015979|gb|ACV89272.1| putative CAD trifunctional protein [Platystoechotes sp. BMW-2009]
          Length = 630

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 81  SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 141 TFGGQTALNCGVELEKAGVFEKYGCKILGTPIQSIIDTEDRKMFAEKINEIGEKVAPSAA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  +I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 201 VYSVEEALNAAEIIGYPVMARAAFSLGGLGSGFAHNQEQLKS--LAIQALAHSNQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 318 AINVIRHFGVIGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 369


>gi|218931757|gb|ACL12517.1| CAD [Clusiodes melanostoma complex sp. OL-2008]
          Length = 1272

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 364 SGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 423

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     I     +    + I +   + D+     +       V    +
Sbjct: 424 TFGGQTALNCGVELERAGIFSKYNVKILGTPIESIIETEDRKLFADRVNEIDERVAPSEA 483

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P +++       LG      +  +    L   +  H +QL+I++
Sbjct: 484 VCSVAMALEAATRLGYPVMVRAAFSLGGLGSGFANNEDELKT--LAHQALAHSNQLIIDK 541

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 542 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNKEYNMLRTT 600

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 601 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 656

Query: 291 WM 292
            +
Sbjct: 657 KL 658


>gi|254431447|ref|ZP_05045150.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanobium sp. PCC 7001]
 gi|197625900|gb|EDY38459.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanobium sp. PCC 7001]
          Length = 450

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 46/148 (31%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AASMGYPVMIKATAGGGGRGMRLVPGPDQLEGLFKAAQGEAEAAFGNPGLYMEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             I  D+ +++   A  A + 
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSVAINADLRRQMGDAAVAAART 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D  S   +++E+N +
Sbjct: 267 IGYEGAGTVEFLVD-RSGNFYFMEMNTR 293


>gi|28197980|ref|NP_778294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa Temecula1]
 gi|182680606|ref|YP_001828766.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa M23]
 gi|28056040|gb|AAO27943.1| biotin carboxylase [Xylella fastidiosa Temecula1]
 gi|182630716|gb|ACB91492.1| acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa M23]
 gi|307579062|gb|ADN63031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa subsp. fastidiosa GB514]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V+  +  +   +  +           
Sbjct: 137 PLGDDIVANVKIAREIGYPVIIKASGGGGGRGMRVVHTEAGLEAAIETTQCEAKAAFGNG 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y++        +    L   +            ++          PA    + +  E+
Sbjct: 197 QVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEALRNEI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A   IG RG    +FLF   + + +++E+N +
Sbjct: 257 GQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|328851175|gb|EGG00332.1| hypothetical protein MELLADRAFT_45459 [Melampsora larici-populina
           98AG31]
          Length = 2225

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 87/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 466 SGSQAIKALKEEGVYTILINPNIATIQTSKGLADKVYFLPVTPEFVRKVIQYERPDGIYC 525

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +    E   +     G   S +   + R     +   +        S  
Sbjct: 526 TFGGQTALGVGIAMANEFEGLGVQVLGTPISTIVTTEDREMFASAMLEIGEKCAMSASAT 585

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
               ++ +   I  P +++       LG      ++ +    L   ++    Q+LIE+ +
Sbjct: 586 SVEESIKAASTIGYPVILRAAFALGGLGSGFANNEEELVE--LCGKAFAISTQVLIERSM 643

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 644 KGW-KEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDADYHMLRTTAI 702

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 703 NVIRHLGVVGECNIQYALNPDSKEYAIIEVNAR--LSRSS--ALASKATGYPLA 752


>gi|310816338|ref|YP_003964302.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Ketogulonicigenium vulgare Y25]
 gi|308755073|gb|ADO43002.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Ketogulonicigenium vulgare Y25]
          Length = 451

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +++    +P   + +           + Y++       
Sbjct: 148 ADDIGYPVILKAAGGGGGRGMRIVRTPADLPEAFMLTRQEAQRFFGNPDIYMEKFLQRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          P   I  D+   +      A Q IG
Sbjct: 208 HVEIQVIADHFGNALWLGERDCSMQRRHQKVIEEAPAPHIDRDLIAAIGARCAKACQDIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL+       +++E+N +
Sbjct: 268 YTGAGTFEFLY--EDGAFYFIEMNTR 291


>gi|304391266|ref|ZP_07373210.1| propionyl-CoA carboxylase alpha chain [Ahrensia sp. R2A130]
 gi|303296622|gb|EFL90978.1| propionyl-CoA carboxylase alpha chain [Ahrensia sp. R2A130]
          Length = 667

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 21/185 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +   D         S +           +++        +
Sbjct: 150 QIGYPVMIKASAGGGGKGMRIAWNDDDAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCR 241
               L  +             ++  +       P+    +  ++     A    QA+   
Sbjct: 210 EIQVLADSHGNCIYLGERECSIQRRNQKVIEEAPSPFLDEKTRKAMGEQAVALSQAVDYA 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D   R  ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDG-DRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRV 315

Query: 296 ASCLR 300
           A+  +
Sbjct: 316 AAGEK 320


>gi|212711057|ref|ZP_03319185.1| hypothetical protein PROVALCAL_02126 [Providencia alcalifaciens DSM
           30120]
 gi|212686225|gb|EEB45753.1| hypothetical protein PROVALCAL_02126 [Providencia alcalifaciens DSM
           30120]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAASAKSYLNIPAIIAAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAQAIHPGYGFLSENADFAEQVEQSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLGNDTEKNKAIAKRIGFPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    +   +            ++          PA  I  +I 
Sbjct: 194 NNDMVYMEKFLENPRHVEIQVMADGQGHAIYLAERDCSMQRRHQKVVEEAPAPGITPEIR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 254 RHIGERCANACIEIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|12057067|emb|CAC19875.1| acetyl-CoA carboxylase [Brassica napus]
          Length = 2321

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 274 PTLPWSGSHVKIPPGSSMVTIPEEMYRQACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 333

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V+ +       
Sbjct: 334 IREVHDDDEVRTLFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVSALHSRDCSV 393

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P      + +     A    +++   G +  +FL+   +   F+
Sbjct: 394 QRRHQKIIEEGPITVAPRDTVKKLEQ----AARRLAKSVNYVGAATVEFLYSMDTGDYFF 449

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 450 LELNPR 455


>gi|91774380|ref|YP_544136.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Methylobacillus flagellatus
           KT]
 gi|91708367|gb|ABE48295.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Methylobacillus flagellatus KT]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRAETIRLMGDKVSAKDTMKAAGVPCVPGSEG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                N   +     I  P +IK   GG   G+ V+  + ++   +  + +         
Sbjct: 137 ALGDDNDEILRIAKDIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVSMTKAEAQAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L                ++          P   I   + +++
Sbjct: 197 MVYMEKFLEQPRHIEIQILADQHGNAIYLGERDCSMQRRHQKVLEEAPAFGISPQLREKI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + I  RG    +FL+   + + +++E+N +
Sbjct: 257 GTACAEACKRINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|332559284|ref|ZP_08413606.1| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           WS8N]
 gi|332276996|gb|EGJ22311.1| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           WS8N]
          Length = 1109

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALADMGVLEKFGVQLIGANREAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 113 V---------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                   M +   +  P +I+P       G  V              
Sbjct: 149 IAAPKLENGRYDINAGVAEAMAAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAICRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 LDASPVAQILVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRVEQENGTLHGVIVQFGGQTPLKLAQALAAEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q++    +    + +             I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQQLLHKLDLKQPHNGMARSRDEAFRIAGEIGYPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 DAQLERYIREAVQVSGTSPVLLDSYLSGAIEVDVDALCDGENVHVAGIMEHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++R      +A+   G+    F        +F LE+N +
Sbjct: 807 HSGDSACCLPPHSLSAETIAELKRQTVEMARALHVVGLMNVQFAI--KDGVIFVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|262382685|ref|ZP_06075822.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_33B]
 gi|301308038|ref|ZP_07213992.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. 20_3]
 gi|262295563|gb|EEY83494.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           2_1_33B]
 gi|300833508|gb|EFK64124.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp. 20_3]
          Length = 1072

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGISTVLLNPNIATIQTSEGVADKVYFLPITPYFVEEVIKKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G        L    +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGTQLYTSGTLAKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEVKTPISQA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +I+       +G  + K +  +    L  S++ +  Q+L+E+
Sbjct: 148 VESMDDAVAAAYKIGFPVMIRSAYALGGMGSGICKDEAELRT--LAESAFAYSSQILVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D     V   +     +            +    ++   ++ L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVVSMENVDPLGVHTGESIVVAPTCSLTEKEL-DLLKEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +  +GY   
Sbjct: 265 STKTIRHLGIVGECNIQYAFNSETCDYRVIEVNAR--LSRSS--ALASKASGYPLA 316


>gi|256838819|ref|ZP_05544329.1| carbamoyl-phosphate synthase, large subunit [Parabacteroides sp.
           D13]
 gi|256739738|gb|EEU53062.1| carbamoyl-phosphate synthase, large subunit [Parabacteroides sp.
           D13]
          Length = 1072

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGISTVLLNPNIATIQTSEGVADKVYFLPITPYFVEEVIKKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G        L    +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGTQLYTSGTLAKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEVKTPISQA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +I+       +G  + K +  +    L  S++ +  Q+L+E+
Sbjct: 148 VESMDDAVAAAYKIGFPVMIRSAYALGGMGSGICKDEAELRT--LAESAFAYSSQILVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D     V   +     +            +    ++   ++ L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVVSMENVDPLGVHTGESIVVAPTCSLTEKEL-DLLKEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +  +GY   
Sbjct: 265 STKTIRHLGIVGECNIQYAFNSETCDYRVIEVNAR--LSRSS--ALASKASGYPLA 316


>gi|291287835|ref|YP_003504651.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Denitrovibrio acetiphilus DSM 12809]
 gi|290884995|gb|ADD68695.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Denitrovibrio acetiphilus DSM 12809]
          Length = 508

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K + GG   G+ ++  +         +SS         + Y++   +   
Sbjct: 149 ALEVGYPIMLKAVHGGGGKGMRLVNDESEFDSAYRTASSEAQNAFGNGDMYIEKFIIEPH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P   I  D   ++  +A  A +AIG
Sbjct: 209 HVEIQVLGDSHGNGIHLFERECSIQRRHQKVIEEAPSPFINDDTRAKMYDVAVKAVKAIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+     +  ++LE+N +
Sbjct: 269 YESAGTLEFIV-GADQNFYFLEMNTR 293


>gi|261344926|ref|ZP_05972570.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rustigianii DSM 4541]
 gi|282567067|gb|EFB72602.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rustigianii DSM 4541]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAASAKSYLNVPAIIAAAEIS 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAQAIHPGYGFLSENADFAEQVEQSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V++  + +   +  + +      
Sbjct: 134 SDGPLGNDTEKNKEIAKRIGFPVIIKASGGGGGRGMRVVRNAKDLESSINLTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    +   +            ++          PA  I  +I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVMADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITPEIR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|255557562|ref|XP_002519811.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis]
 gi|223541050|gb|EEF42607.1| Biotin caboxylase subunit (BC) of Het-ACCase [Ricinus communis]
          Length = 541

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 77/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   + +   I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 158 YGFLAENAVFVEMCKEHGINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSEGLLQST 217

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   H I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 218 EEAVKLAHEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEK 277

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 278 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 333

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 334 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 368


>gi|221640281|ref|YP_002526543.1| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           KD131]
 gi|221161062|gb|ACM02042.1| Carbamoyl-phosphate synthase large subunit [Rhodobacter sphaeroides
           KD131]
          Length = 1113

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 33  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 92

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 93  TMGGQTGLNTALALADMGVLEKFGVQLIGANREAIEMAEDRKLFREAMDRIGLENPKATI 152

Query: 113 V---------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                   M +   +  P +I+P       G  V              
Sbjct: 153 IAAPKLENGRYDINAGVAEAMAAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAICRSG 212

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 213 LDASPVAQILVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 272

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 273 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 328

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 329 SKATGFPIAKIAAKL 343



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 634 RLYFEPLTLEHVLEILRVEQENGTLHGVIVQFGGQTPLKLAQALAAEGIPILGTTPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q++    +    + +             I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQQLLHKLDLKQPHNGMARSRDEAFRIAGEIGYPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 754 DAQLERYIREAVQVSGTSPVLLDSYLSGAIEVDVDALCDGENVHVAGIMEHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++R      +A+   G+    F        +F LE+N +
Sbjct: 811 HSGDSACCLPPHSLSAETIAELKRQTVEMARALHVVGLMNVQFAI--KDGVIFVLEVNPR 868

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 869 ASRT----VPFVAKAT 880


>gi|207109449|ref|ZP_03243611.1| D-alanyl-alanine synthetase A [Helicobacter pylori
          HPKX_438_CA4C1]
          Length = 114

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 4/49 (8%)

Query: 2  AVLMGGISSEREVSLSSGKACASALE-DAGFKVSQIDVDRSVGLVLAHL 49
           VL GG S E E+S+ S  A   AL+    +    I +D +    L   
Sbjct: 6  CVLFGGASFEHEISIVSAIALKEALKGRIKY---FIFLDENHHFYLIEE 51


>gi|150010006|ref|YP_001304749.1| glutamine-dependent carbamyl phosphate synthetase [Parabacteroides
           distasonis ATCC 8503]
 gi|255012721|ref|ZP_05284847.1| glutamine-dependent carbamyl phosphate synthetase [Bacteroides sp.
           2_1_7]
 gi|298374367|ref|ZP_06984325.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_19]
 gi|149938430|gb|ABR45127.1| glutamine-dependent carbamyl phosphate synthetase [Parabacteroides
           distasonis ATCC 8503]
 gi|298268735|gb|EFI10390.1| carbamoyl-phosphate synthase, large subunit [Bacteroides sp.
           3_1_19]
          Length = 1072

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGISTVLLNPNIATIQTSEGVADKVYFLPITPYFVEEVIKKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G        L    +    + + A   + D+    + ++   V    S  
Sbjct: 88  AFGGQTALNCGTQLYTSGTLAKYGVKVLGTSVEAIMYTEDRDLFVKKLNEIEVKTPISQA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +I+       +G  + K +  +    L  S++ +  Q+L+E+
Sbjct: 148 VESMDDAVAAAYKIGFPVMIRSAYALGGMGSGICKDEAELRT--LAESAFAYSSQILVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D     V   +     +            +    ++   ++ L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVVSMENVDPLGVHTGESIVVAPTCSLTEKEL-DLLKEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + +G  G     + F+  +     +E+N +  ++  S     +  +GY   
Sbjct: 265 STKTIRHLGIVGECNIQYAFNSETCDYRVIEVNAR--LSRSS--ALASKASGYPLA 316


>gi|148654020|ref|YP_001281113.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           PRwf-1]
 gi|148573104|gb|ABQ95163.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter sp. PRwf-1]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+ K   +   +  + S    +      Y++       
Sbjct: 149 AEKVGYPVIIKAASGGGGRGMRVVDKQSELLKAIAMTKSEAEANFGDSVVYLERYLQKPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T+            ++          PA    +   +++      A + +G
Sbjct: 209 HIEVQVLADTQGHAIHLGERDCSMQRRHQKVIEEAPAPGISESQRQQIGEACVNACKRMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL+   + + F++E+N +
Sbjct: 269 YVGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|33151818|ref|NP_873171.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           ducreyi 35000HP]
 gi|33148039|gb|AAP95560.1| biotin carboxylase [Haemophilus ducreyi 35000HP]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 83/282 (29%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL--------------------------- 49
                 A ++ G K   +    DR +  VL                              
Sbjct: 14  ALRVLRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSVKSYLNIPMIIAAAEIT 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  NADAIHPG-YGFLSENADFAEQVEKSGFTFIGPTADVIRLMGDKVSAIEAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +  + I  P +IK   GG   G+ V+ + + +   +  + +     
Sbjct: 133 GSDGPIGNDPVKNKEIANRIGYPVIIKASGGGGGRGMRVVYQAKDLEASIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDI 223
                 Y++        +    L  T             ++          PA  I  ++
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITPEL 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            K +      A + IG RG    +FLF   + + +++E+N +
Sbjct: 253 RKFIGERCAKACREIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|255985849|ref|YP_353897.3| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           2.4.1]
 gi|77388811|gb|ABA79996.1| carbamoyl-phosphate synthase large subunit [Rhodobacter sphaeroides
           2.4.1]
          Length = 1113

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 33  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 92

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 93  TMGGQTGLNTALALADMGVLEKFGVQLIGANREAIEMAEDRKLFREAMDRIGLENPKATI 152

Query: 113 V---------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                   M +   +  P +I+P       G  V              
Sbjct: 153 IAAPKLENGRYDINAGVAEAMAAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAICRSG 212

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 213 LDASPVAQILVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 272

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 273 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 328

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 329 SKATGFPIAKIAAKL 343



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 581 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 633

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 634 RLYFEPLTLEHVLEILRVEQDNGTLHGVIVQFGGQTPLKLAQALAAEGIPILGTTPDAID 693

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q++    +    + +             I  P VI+P        + +++ 
Sbjct: 694 LAEDRERFQQLLHKLDLKQPHNGMARSRDEAFRIAGEIGYPLVIRPSYVLGGRAMEIVRD 753

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 754 DAQLERYIREAVQVSGTSPVLLDSYLSGAIEVDVDALCDGENVHVAGIMEHIEEAG---V 810

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++R      +A+   G+    F        +F LE+N +
Sbjct: 811 HSGDSACCLPPHSLSAETIAELKRQTVEMARALHVVGLMNVQFAI--KDGVIFVLEVNPR 868

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 869 ASRT----VPFVAKAT 880


>gi|126463235|ref|YP_001044349.1| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           ATCC 17029]
 gi|126104899|gb|ABN77577.1| carbamoyl-phosphate synthase large subunit [Rhodobacter sphaeroides
           ATCC 17029]
          Length = 1109

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/315 (11%), Positives = 91/315 (28%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +  +      +LE   +    +   A  ++ D+   ++ +   G+    + +
Sbjct: 89  TMGGQTGLNTALALADMGVLEKFGVQLIGANREAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 113 V---------------NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +                   M +   +  P +I+P       G  V              
Sbjct: 149 IAAPKLENGRYDINAGVAEAMAAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAICRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 LDASPVAQILVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P   ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPADGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 102/316 (32%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRVEQENGTLHGVIVQFGGQTPLKLAQALAAEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +Q++    +    + +             I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQQLLHKLDLKQPHNGMARSRDEAFRIAGEIGYPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 DAQLERYIREAVQVSGTSPVLLDSYLSGAIEVDVDALCDGENVHVAGIMEHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +   E++R      +A+   G+    F        +F LE+N +
Sbjct: 807 HSGDSACCLPPHSLSAETIAELKRQTVEMARALHVVGLMNVQFAI--KEGVIFVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|330752392|emb|CBL87344.1| acetyl-CoA carboxylase biotin carboxylase subunit [uncultured
           Sphingobacteria bacterium]
 gi|330752520|emb|CBL87468.1| acetyl-CoA carboxylase biotin carboxylase subunit [uncultured
           Sphingobacteria bacterium]
          Length = 455

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ +++ ++    +   +             Y++   +  
Sbjct: 147 MATKIGYPVMIKATAGGGGKGMRIVEAEEDFEKNFESAQQEARASFGNDGIYIEKFIVQP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +        +  V         ++          P+    + + K++  +A  A + I
Sbjct: 207 RHIEIQIAGDQKGNVCHLSERDCSVQRRHQKLIEECPSPFVDEKLRKKMGDVAIKAAKYI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G+   +FL D      +++E+N +
Sbjct: 267 NFEGMGTVEFLVDKDKN-FYFMEMNTR 292


>gi|326471664|gb|EGD95673.1| protein kinase subdomain-containing protein [Trichophyton tonsurans
           CBS 112818]
          Length = 2261

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 504 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKRERPDAIYV 563

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 564 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEVIGEKCAKSASAS 623

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 624 NLEEAMEAVKDIGFPVIVRAAYALGGLGSGFAENDDQLRE--LCTKAFAASPQVLIERSM 681

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 682 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 740

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 741 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 790


>gi|308179681|ref|YP_003923809.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
 gi|308045172|gb|ADN97715.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ST-III]
          Length = 440

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 20/263 (7%)

Query: 21  ACASALED-AGF-----KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDG 66
           A  S  +  AG+     +V  I    + G  L      +A    H        G   E+ 
Sbjct: 30  AVCSTADRHAGYTQLADEVVCIGPAAASGSYLNAEAILMAAINTHADAIHPGYGFLAENA 89

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQH 122
              A+     I +         L  DK R+K       VPV                +  
Sbjct: 90  DFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSLQGLAWPDIKHAAA 149

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V+K   GG   GI V+     +   L  +        L    Y++    T   +
Sbjct: 150 KIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRATRQEAAASFLNDAMYLEQFLTTARHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L          D       +          + +     + +  L+         + 
Sbjct: 210 EVQVLGTGTKLFILGDRDCSLQLHKQKVLEESPASILTETQRRTLYDLSRQLLAGTHYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++LF     + +++E+N +
Sbjct: 270 LGTIEYLF--ADGQFYFMEMNTR 290


>gi|299483087|gb|ADJ19290.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Tomomyza sp. MDT-2010]
          Length = 1293

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 91/309 (29%), Gaps = 42/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +V  I+ +                       V  V+   +P+    
Sbjct: 384 SGSQAIKALKEEKIQVILINPNVATVQTSKGLADKVYFLPLTPEYVEQVIKVERPNGVLL 443

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   + +     +    + I +   + D+    + V+     V    +
Sbjct: 444 TFGGQTALNCGVELDKEGVFSKYNVKILGTPIKSVIETEDRKVFAERVAEIGEKVAPSKA 503

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + S   +  P + +               +      L Q +   H +QL+I++
Sbjct: 504 VCSVDEALVSAEQLGYPVMARXAAFSLGGLGSGFANNSEELRSLAQQAL-AHSNQLIIDK 562

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +P   Y  ++  
Sbjct: 563 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLPNKEYNMLRTT 621

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    +  G  G     +  +P S + + +E+N +  ++  S        +P     A  
Sbjct: 622 AIKVIRHFGVIGECNIQYALNPDSEEYYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 679

Query: 282 --GYSFREL 288
             G S  E+
Sbjct: 680 SLGISLPEI 688


>gi|218526252|gb|ACK86533.1| carbamoyl-phosphate synthase [Priacma serrata]
          Length = 722

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V++    V    +
Sbjct: 191 TFGGQTGLNCGVELQKSGVFDKYGVKVLGTPIQSIIDTEDRKIFGEQVNAIGEKVAPSSA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG         +     Q+    H  QL+I++
Sbjct: 251 VYSVQEALEAAEQLGYPVMARAAFSLGGLGSGFADNKDELKSIAQQAL--AHSSQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
              G             +   I V   +       ++  +        +    Y  ++  
Sbjct: 309 SHKGW-REVEYEVVRDANDNCITVCNMENVDPLGIHTGESIVVAPSQTLNNREYNMLRTT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYAVSPDSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|153826958|ref|ZP_01979625.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MZO-2]
 gi|149739206|gb|EDM53478.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MZO-2]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 84/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +     +L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQDLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|84515326|ref|ZP_01002688.1| propionyl-CoA carboxylase, alpha subunit [Loktanella vestfoldensis
           SKA53]
 gi|84510609|gb|EAQ07064.1| propionyl-CoA carboxylase, alpha subunit [Loktanella vestfoldensis
           SKA53]
          Length = 665

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/179 (13%), Positives = 52/179 (29%), Gaps = 21/179 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   DQ        S +           +++        +   
Sbjct: 153 YPVMIKASAGGGGKGMRIAWNDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L                ++  +       P+    +  ++     +    QA+G     
Sbjct: 213 VLADQHGNAVYLHERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQSVALAQAVGYTSAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
             +F+ D   R  ++LE+N +              +       G    +L+  M+  A+
Sbjct: 273 TVEFIVDG-DRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRVAA 317


>gi|254933941|gb|ACT87579.1| carbamoylphosphate synthetase [Atteva punctella]
          Length = 731

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 191 TFGGQTALNCGVELQKSGVFEKYNVNVLGTPIQSIIDTEDRKIFAEKIHAIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +   +L  ++++H DQL+I++
Sbjct: 251 VYSVEEALSAAIQIGYPVMARAAFSLGGLGSGFANNEEELR--VLAHTAFSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 ALKVIRHFGVVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|253999450|ref|YP_003051513.1| phosphoribosylglycinamide formyltransferase 2 [Methylovorus sp.
           SIP3-4]
 gi|253986129|gb|ACT50986.1| phosphoribosylglycinamide formyltransferase 2 [Methylovorus sp.
           SIP3-4]
          Length = 399

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/283 (14%), Positives = 81/283 (28%), Gaps = 26/283 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAH----LKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       KP L    +
Sbjct: 23  GKEVIIALQRLGVEVIAVDRYANAPGHQVAHRSHVIDMTDADALQALVALEKPHLIVPEI 82

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                E         L   +P   +  L       +  + + +S    P   +       
Sbjct: 83  EALNTEVLARIEEQGLSTVVPTVKAVQLTMNREGIRRLAAETLSLPTSPYAFARSEQELQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIE 176
               + I  P  +KP    S  G   I     +      ++S    +Q ++I +     +
Sbjct: 143 AAIDNGIGYPCFVKPTMSSSGKGQSRITSQDQVAKAWDYAASAGRVNQGVVIVEGQIAFD 202

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + D T              + S        P  +      E Q +A     
Sbjct: 203 FEITLLTLRAKDSTGAIQTYFCEPIGHRQESGDYVESWQPQAMTSQALAEAQHIAKAVTD 262

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++G  G+   +        +V++ E++ +P      +    + 
Sbjct: 263 SLGGLGLFGVELFI--KGDQVWFSEVSPRP--HDTGMVTMASQ 301


>gi|218526200|gb|ACK86507.1| carbamoyl-phosphate synthase [Lomamyia banksi]
          Length = 729

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +PD    
Sbjct: 132 SGSQAIKALKEENIQTILMNPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +  ++    + I +   + D+      V+     V    +
Sbjct: 192 TFGGQTALNCGVELEKAGVFKKYDVRILGTPIKSIIETEDRKIFADRVNEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG         +   +L + +  H  QL+I++
Sbjct: 252 VYSVQEALNAAETIGYPVMARAAFSLGGLGSGFANNSDEL--KILATQALAHSSQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLRGW-KEVEYEIVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|239817903|ref|YP_002946813.1| phosphoribosylglycinamide formyltransferase 2 [Variovorax paradoxus
           S110]
 gi|259547271|sp|C5CP83|PURT_VARPS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|239804480|gb|ACS21547.1| phosphoribosylglycinamide formyltransferase 2 [Variovorax paradoxus
           S110]
          Length = 400

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 78/281 (27%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +       +  ++   KP L    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPEQLKALIEAEKPTLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          ++  IP   +  L       +  + + +     P      +    
Sbjct: 84  EAIATPMLQQLEDAGVVRVIPTARAARLTMDREGIRRLAAETLGVPTSPYKFCDSLAELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P ++KP+   S  G   I     +      + +        +I +     +
Sbjct: 144 AAIDAGIGYPCIVKPVMSSSGKGQSKIDGPADVQKAWDYAMAGGRVSHGRVIVEGFIDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + D       +       ++ S        P  +     ++ Q++A     
Sbjct: 204 YEITLLTVRAKDAAGAVQTRFCEPIGHVQVSGDYVESWQPHPMAPAALQKAQQIAEAVTS 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G +G+   +        +V++ E++ +P      +    
Sbjct: 264 DLGGQGLFGVELFV--KGDEVWFSEVSPRP--HDTGMVTMA 300


>gi|218510726|ref|ZP_03508604.1| putative urea amidolyase protein [Rhizobium etli Brasil 5]
          Length = 638

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I+ P ++K   GG  +G+ +    +S+                    Y++       
Sbjct: 147 AEAIAYPVMLKSTAGGGGIGMQLCADPESLKASFESVQRTARASFGDARVYIERFVADAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +           V         L+  +       PA          + + A     ++ 
Sbjct: 207 HVEVQIFGDGRGNVIALGERDCSLQRRNQKVVEETPAPGLSAATRGRLHKAAVDLGASVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
                  +F++DPL ++ ++LE+N       P +T         A  G    +L+ WM+ 
Sbjct: 267 YESAGTVEFIYDPLRQEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWMIR 314

Query: 295 DAS 297
            ++
Sbjct: 315 QSA 317


>gi|158451195|gb|ABW38958.1| putative CAD trifunctional protein [Holocerina smilax]
          Length = 977

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 377 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 436

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 437 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 496

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       L       ++ +    L   + +H DQL+I++
Sbjct: 497 VTSVEEALVAAVQIGYPVMARSAFSLGGLXSGFANNEEELRA--LAHQALSHSDQLIIDK 554

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 555 SLKGW-KEVEYEVVRDAYDNCITVCNMENIDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 613

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 614 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 669

Query: 291 WM 292
            +
Sbjct: 670 KL 671


>gi|82592710|gb|ABB84526.1| unknown [Myxococcus xanthus]
          Length = 472

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ V +    +     Q +      +      +   +    
Sbjct: 170 AERIGYPVLVKAASGGGGIGMAVARNAAEMEKVYRQCTDRAKAAFGKEGVYVERYFPAPR 229

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD    +      +        K      + +       ++ +++   A  A 
Sbjct: 230 HIEVQILGDQHGHLIHCLERECSIQRRHQKVVEEAPSVLFADGRNPELAQKLFTAAVAAA 289

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
           +A G       +FL+     +V+++E+N +              +       G    +L+
Sbjct: 290 KAFGYANAGTVEFLY--SDGEVYFIEMNAR----------LQVEHPVTELTTGL---DLI 334

Query: 290 LWMVEDASCLR 300
            W +  A+  R
Sbjct: 335 GWQLRIAAGER 345


>gi|160872652|ref|ZP_02062784.1| acetyl-CoA carboxylase, biotin carboxylase [Rickettsiella grylli]
 gi|159121451|gb|EDP46789.1| acetyl-CoA carboxylase, biotin carboxylase [Rickettsiella grylli]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/281 (11%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA-------------FNVL------- 58
                 A ++ G +   +       L    L  +                  +       
Sbjct: 14  ALRILRACKELGIQTVALHSTADDNLKHVKLADETVCIGPPSASQSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      ++     +            DK+ +   +    +P  P 
Sbjct: 74  DAMGIHPGYGFLSENADFAERVQQSGFVFIGPEPETIRRMGDKVSAIAAMRKAKIPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   ++  +     I  P +IK   GG   GI V+  + ++   +  + S    + 
Sbjct: 134 SEGELENDDKKNLKIAQKIGYPVLIKAAGGGGGRGIRVVHSEAALLSAISLTRSEAEANF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++   +    +    L   +            ++          PA    +  +
Sbjct: 194 KNASVYLEKFLINPRHIEIQVLGDGQGHAVHLGERDCSMQRRHQKVIEEAPAVGITEKQR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A + +  RG    +FL+   +   +++E+N +
Sbjct: 254 QQMGELCVKACRDMNYRGAGTFEFLY--ENGHFYFIEMNTR 292


>gi|330872816|gb|EGH06965.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas syringae
           pv. morsprunorum str. M302280PT]
          Length = 393

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/284 (14%), Positives = 78/284 (27%), Gaps = 34/284 (11%)

Query: 3   VLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRS--------------------V 42
           VL  G S E    L  GK     L+  G +V  +D   +                    +
Sbjct: 15  VLFCG-SGE----L--GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHVINMLDGAAL 67

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
             V+   KP      +        +         IP   +  L       +  + + +  
Sbjct: 68  RAVIELEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELKL 127

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                            +   +  P V+KP+   S  G  ++K    +        +   
Sbjct: 128 PT-SPYHFADTFEAYSKAVEDLGFPCVVKPVMSSSGKGQSLLKSADDVQKA--WDYAQEG 184

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G        ++G            L V  I            +          P  +   
Sbjct: 185 GRAGKGRVIIEG--FIDFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPA 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
              E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 243 ALAESERVAKAVTEALGGRGMFGVELFI--KGDQVWFSEVSPRP 284


>gi|320096145|ref|ZP_08027739.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 178 str. F0338]
 gi|319976921|gb|EFW08670.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 178 str. F0338]
          Length = 484

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 50/144 (34%), Gaps = 6/144 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P V+K   GG   GI +++    + L   + +        L   +V+        +
Sbjct: 152 EHGYPVVLKRADGGGGRGITIVRSGADLDLFFARHT----DPADLGAHFVERFVEVARHV 207

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
              S   +             ++  +       PA    D  ++ +   +    + +G  
Sbjct: 208 ETQSARDSHGNFHVISTRDCSVQRRNQKLVEEAPAPFLPDGAHERLVEWSRALFEHVGYV 267

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G+   +FL +P    +++LE+N +
Sbjct: 268 GVGTCEFLLEP-DGSIWFLEVNPR 290


>gi|311109291|ref|YP_003982144.1| phosphoribosylglycinamide formyltransferase II [Achromobacter
           xylosoxidans A8]
 gi|310763980|gb|ADP19429.1| phosphoribosylglycinamide formyltransferase II [Achromobacter
           xylosoxidans A8]
          Length = 405

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 70/281 (24%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D   +  V+   +P +    +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRKVIEQERPHVIVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
                   +      +  +  T      +       R               +       
Sbjct: 89  EAIATNLLVELEEAGVARVTPTARAAQLTMNREGIRRLAAETLGLPTSPYRFVDTEEELR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P VIKP+   S  G  VIK    +      +      G    I +     +
Sbjct: 149 AAIDGGIGYPCVIKPVMSSSGKGQSVIKSADDVESAWRYAQEGGRVGGGRAIVEGFIRFD 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +         +        +          P  +     +  + +A     
Sbjct: 209 YEITLLTVRARGADGQVETRYCEPIGHKQVDGDYVESWQPHPMSPAALQRSREIALAVTS 268

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G  GI   +        +V++ E++ +P      +   +
Sbjct: 269 NLGGLGIFGVELFV--AGDQVWFSEVSPRP--HDTGMVTMI 305


>gi|296109112|ref|YP_003616061.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           infernus ME]
 gi|295433926|gb|ADG13097.1| acetyl-CoA carboxylase, biotin carboxylase [Methanocaldococcus
           infernus ME]
          Length = 506

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/269 (13%), Positives = 83/269 (30%), Gaps = 27/269 (10%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V    K D      +G   E+      ++     +      A      K+ +K++
Sbjct: 64  DAILHVAEKAKVDAIHPG-YGFLAENANFARAVKKAGFEFIGPHPDAIEAMGSKINAKKI 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVP+ P     +      ++    I  P V+K   GG  +G+ V    + +   + 
Sbjct: 123 MKKAGVPLLPGSDGPVEDVDEAIEIAEAIGFPVVVKASAGGGGMGMSVAYSKEELEKVIE 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            +             +++        +    L      +         ++          
Sbjct: 183 STKLIAQNAFGDSTIFIEKYLENPRHIEIQILGDRFGKIIHLGDRECSIQRRHQKLIEEA 242

Query: 216 P-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
           P   +  ++ + +   A  A +AI        +FL+       ++LE+N +         
Sbjct: 243 PSPIMTEELRERMGESAIKAGKAINYDSAGTVEFLY--QDGNFYFLEMNTR--------- 291

Query: 275 PEMAAY------AGYSFRELLLWMVEDAS 297
                +       G    +L+  M++ A+
Sbjct: 292 -IQVEHTVTEMITGV---DLVKEMIKIAA 316


>gi|218885769|ref|YP_002435090.1| hypothetical protein DvMF_0665 [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218756723|gb|ACL07622.1| protein of unknown function DUF201 [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 386

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 77/263 (29%), Gaps = 22/263 (8%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGIL 85
           L++ GF    ID    +  +    +  +   VL            +   + +    +  L
Sbjct: 56  LDEDGF----ID---DLRRICEENRVSVLLPVLGEAAVIARHRHRLGSDVRLLLGDADTL 108

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
           A      +       +   VP   ++        +      P + KP+ G    G+    
Sbjct: 109 AIFADKYRTYGVAREAGVLVPEYRAVADLAGDPAALAAFPCPCLAKPVWGWGGYGMYECA 168

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
             +++   L+        +   +++ + G  +               +       SY  +
Sbjct: 169 DARAL-AALVADMPETTREGYFVQRRMAGDVVCVA--MLCDAGRVHASDTFRIVTSYPGR 225

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        +     ++             + +   G  ++DF+ DP +   + ++IN +
Sbjct: 226 HGQSTVRETVRCDAAVE-------SLRGLLEHVRWSGPCQADFIVDPATGTPYLIDINAR 278

Query: 266 PGMTPVSIFPEMAAYAGYSFREL 288
                 S+    +   G  F  L
Sbjct: 279 ---YWNSLI--QSTARGIDFPSL 296


>gi|169598756|ref|XP_001792801.1| hypothetical protein SNOG_02186 [Phaeosphaeria nodorum SN15]
 gi|160704462|gb|EAT90398.2| hypothetical protein SNOG_02186 [Phaeosphaeria nodorum SN15]
          Length = 1220

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/271 (12%), Positives = 79/271 (29%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             D    L +A  K   A    +G   E+     ++    I +      +      K  +
Sbjct: 61  YTDEDAILHIAKDKGADAIIPGYGFLSENAHFARLVGDAGIAWVGPSPESIEAFGIKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +     VP+ P     +      +     I  P ++K   GG  +G+I   K + +  
Sbjct: 121 RALAEKANVPIVPGTKGLVEDENAAVKEAERIGFPVMLKATGGGGGMGLITCNKIEEVRE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++        +                     ++       
Sbjct: 181 GFRMVQSRGKTLFKNPGVFIEAFYPASHHIEVQVFGNGLGQAIHFGERECSIQRRHQKVI 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+      + + +++   A    ++I        ++L D  S   F+LE+N      
Sbjct: 241 EECPSPFVERNIALREKLGDAAVRLAESIKYGSAGTIEYLVDDKSGDFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M++ A
Sbjct: 296 ------RLQVEHGITELCYNVDLVELMLKQA 320


>gi|68271223|gb|AAY89102.1| pyruvate carboxylase [Bacillus methanolicus MGA3]
          Length = 1147

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 65  LDI-EGIIEIAKSSGADAIHPG-YGFLSENIEFAKRCAEEGIIFIGPEAKHLDMFGDKVK 122

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     +      +        P +IK   GG   G+ +++  + + 
Sbjct: 123 ARTQAQLAEIPVIPGSDGPVKGLEEVIQFGKTYGFPIIIKAALGGGGRGMRIVRSLEEVR 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         + YV+        +    +      +         ++      
Sbjct: 183 EAYERAKSEAKAAFGSDQVYVEKFIEKPKHIEVQIIGDEHGNIVHLYERDCSVQRRHQKV 242

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   I  ++ + +   A    + +        +FL      + +++E+N +
Sbjct: 243 VEVAPCVSISSELRERICEAAVRLMKNVNYVNAGTVEFLL--SGDEFYFIEVNPR 295


>gi|68271225|gb|AAY89103.1| pyruvate carboxylase [Bacillus methanolicus]
          Length = 1147

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/235 (11%), Positives = 71/235 (30%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+           I +         +  DK++
Sbjct: 65  LDI-EGIIEIAKSSGADAIHPG-YGFLSENIEFAKRCAEEGIIFIGPEAKHLDMFGDKVK 122

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     +      +        P +IK   GG   G+ +++  + + 
Sbjct: 123 ARTQAQLAEIPVIPGSDGPVKGLEEVIQFGKTYGFPIIIKAALGGGGRGMRIVRSLEEVR 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         + YV+        +    +      +         ++      
Sbjct: 183 EAYERAKSEAKAAFGSDQVYVEKFIEKPKHIEVQIIGDEHGNIVHLYERDCSVQRRHQKV 242

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   I  ++ + +   A    + +        +FL      + +++E+N +
Sbjct: 243 VEVAPCVSISSELRERICEAAVRLMKNVNYVNAGTVEFLL--SGDEFYFIEVNPR 295


>gi|54308874|ref|YP_129894.1| phosphoribosylglycinamide formyltransferase 2 [Photobacterium
           profundum SS9]
 gi|81828773|sp|Q6LRI4|PURT_PHOPR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|46913304|emb|CAG20092.1| putative phosphoribosylglycinamide formyltransferase 2
           [Photobacterium profundum SS9]
          Length = 391

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIAVDRYDNAPAMQVAHRSHVIDMLDGDALRKLIELEQPHYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P  ++  L       +  + + +                 +
Sbjct: 82  EAIATDTLVSLEAEGVNIVPTANATKLTMNREGIRRLAAEDLQIPT-SPFEFADQYDDFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK    I        +   G        V+G    
Sbjct: 141 AAVERVGTPCVVKPIMSSSGKGQSVIKTPADIEA--SWQYAQEGGRAGTGRVVVEGFIKF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   +    +     +     + +          P ++  +  K  Q +A     A+
Sbjct: 199 DYEITLLTTRAVDGIHFCAPIGHRQEEG--DYRESWQPQQMSDEALKAAQDVAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        +V + E++ +P   GM       +S F        G   ++++
Sbjct: 257 GGYGLFGVELFV--RGNEVLFNEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPIQQII 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|311277781|ref|YP_003940012.1| acetyl-CoA carboxylase, biotin carboxylase [Enterobacter cloacae
           SCF1]
 gi|308746976|gb|ADO46728.1| acetyl-CoA carboxylase, biotin carboxylase [Enterobacter cloacae
           SCF1]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D       +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGHAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCSKACIDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|304313040|ref|YP_003812638.1| Putative acyl-CoA carboxylase alpha chain protein [gamma
           proteobacterium HdN1]
 gi|301798773|emb|CBL47006.1| Putative acyl-CoA carboxylase alpha chain protein [gamma
           proteobacterium HdN1]
          Length = 673

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/185 (14%), Positives = 54/185 (29%), Gaps = 19/185 (10%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
                 I  P +IK   GG   G+ V++  +     L                 ++    
Sbjct: 151 HQQADRIGYPLLIKAAFGGGGKGMRVVEASEHFLEALQSCRREGQASFGNPTVLLEKYLT 210

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +                     ++          PA     +  K +   A  A +
Sbjct: 211 QPRHVEIQVFCDQHGNGVYLHERDCSIQRRHQKIIEEAPAPGLSSETRKAMGEAAVAAAR 270

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           AI   G    +FL+D +  + +++E+N       P +T              + ++L+ W
Sbjct: 271 AIDYEGAGTIEFLYD-VDGRFYFMEMNTRLQVEHP-VTEY-----------ITRQDLVEW 317

Query: 292 MVEDA 296
            +  A
Sbjct: 318 QIRVA 322


>gi|270290262|ref|ZP_06196487.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici 7_4]
 gi|270281043|gb|EFA26876.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici 7_4]
          Length = 819

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 96/282 (34%), Gaps = 13/282 (4%)

Query: 19  GKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELL 75
             +    L+    F V+++ V+ ++  +L   + D+   V+   G       +     L 
Sbjct: 50  ANSVIPQLDVPINFIVTELTVN-NLIQILREHEIDVILPVVGNTGGLQLAEQLNESGILK 108

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
           E+     G+  + +               +         +   +  +     +  P +IK
Sbjct: 109 ELNIRTMGVTTTTIHNINNPELMNKVLRHIKEPIIPTTVVENEKNAVMFAKRVGFPVLIK 168

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P+   +    I    +  +   L  +   +  +Q+ +E+ V G      +      + ++
Sbjct: 169 PIASLTKTNRIKCDNEHQLQEVLETAFKVSTTNQVAVEKSVVG-YKEIEMTVIRDAEGSK 227

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           + +  ++  +    +S  +        +    ++E++  A    + +  +G+    +  D
Sbjct: 228 LLINGAEDLNPIGVHSGDSIIFSPTQTLTDTEFQELRASALKITEVLKIKGVCHVQYALD 287

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P + K F   IN  P     + F   A   GY    ++  ++
Sbjct: 288 PTNGKYFVTRIN--PFFDRTTAF--AARATGYPVATVVAEIL 325


>gi|157372651|ref|YP_001480640.1| acetyl-CoA carboxylase biotin carboxylase subunit [Serratia
           proteamaculans 568]
 gi|157324415|gb|ABV43512.1| acetyl-CoA carboxylase, biotin carboxylase [Serratia proteamaculans
           568]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQIERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|161830399|ref|YP_001597549.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           331]
 gi|161762266|gb|ABX77908.1| acetyl-CoA carboxylase, biotin carboxylase [Coxiella burnetii RSA
           331]
          Length = 448

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 67/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +      A  L  +K+ + + +   G+P  P         
Sbjct: 82  YGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDGALGKD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+ ++  +   +  + +         + Y++
Sbjct: 142 GDANLLIAEQIGYPILIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTDKVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAF 232
                   +    L   +            ++          P   I       +     
Sbjct: 202 KFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQKVIEEAPAPDITPKQRATIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A+  RG    +FL+   + + +++E+N +
Sbjct: 262 QACIAMNYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|870726|gb|AAC41659.1| biotin carboxylase subunit [Nicotiana tabacum]
 gi|1582354|prf||2118337A Ac-CoA carboxylase:SUBUNIT=biotin carboxylase
          Length = 536

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 151 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQST 210

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +     I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 211 EEGVRLAEEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 270

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++   +  
Sbjct: 271 YVQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRNAMGD 326

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 327 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 361


>gi|319951668|ref|YP_004162935.1| carbamoyl-phosphate synthase, large subunit [Cellulophaga algicola
           DSM 14237]
 gi|319420328|gb|ADV47437.1| carbamoyl-phosphate synthase, large subunit [Cellulophaga algicola
           DSM 14237]
          Length = 950

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIILHEKPEGVIVQLGGQTALKLAEKLEKHGIKIIGTSFKALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            ++   P           +     +  P +I+P       G+ ++  
Sbjct: 680 LAEDRGSFSKMLQENNIPFPQFGVAETAEEALALSDELDFPLLIRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            Q +   ++       G++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 RQELEEHVINLLKQIPGNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F        V+ +E N +
Sbjct: 800 ---DSNATLPPFNLGELVMQQIKDHTKNIALALNTVGLINVQFAI--KDEIVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|299483112|gb|ADJ19303.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Apystomyia elinguis]
          Length = 1293

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 33/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 384 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLEYVEQVIKAERPNGVLL 443

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 444 TFGGQTALNCGVELDRAGVFAKFNVKILGTPIQSIIETEDRKIFAERVNEIGEKVAPSEA 503

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +               +Q    +L   +   H +QL+I++
Sbjct: 504 VYSVQEALEAADRLGYPVMARXAAFSLGGLGSGFANNQEELKNLAHQAL-AHSNQLVIDK 562

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 563 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 621

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 622 AIKVIRHFGVIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 677

Query: 291 WM 292
            +
Sbjct: 678 KL 679


>gi|256372464|ref|YP_003110288.1| carbamoyl-phosphate synthase, large subunit [Acidimicrobium
           ferrooxidans DSM 10331]
 gi|256009048|gb|ACU54615.1| carbamoyl-phosphate synthase, large subunit [Acidimicrobium
           ferrooxidans DSM 10331]
          Length = 1100

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 89/303 (29%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQ-------IDVDRSVGL--------------VLAHLKPDLAFN 56
           SG      L + G +V         I  D                   ++   +PD    
Sbjct: 29  SGVQACRVLREEGLRVILANSNPATIMTDPEFADATYIEPLTLEVLERIIEAERPDAVLP 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---VCP 109
            L G    +  ++      LE   +    +   +  L+ ++   +Q++ S          
Sbjct: 89  TLGGQTALNLAMELDASGVLERSGVRMLGARPASIELAENRDAFRQLLMSIDEQLAVRGR 148

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       D    +  P +++P       G  +     S    L      +   ++L+E
Sbjct: 149 LVRSLEEGRDVADELGYPLMLRPSYILGGAGTGIATDPSSFEAMLRAGLIASPVGEVLVE 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   + D   +     +     +      +         L+  +    
Sbjct: 209 ESIAGWKEFELEVMRDANDNCVVVCSIENVDPMGVHTGDSITVAPAQTLTDLEYQRMRSL 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
              +  +     G S   F  +P S ++  +E+N  P ++  S     +   G+   ++ 
Sbjct: 269 SFEILRRVGVETGGSNVQFAVEPTSGRMVVVEMN--PRVSRSS--ALASKATGFPIAKIA 324

Query: 290 LWM 292
             +
Sbjct: 325 TRL 327



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 21/175 (12%), Positives = 57/175 (32%), Gaps = 13/175 (7%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS------WNHGDQLLIEQYVDGIEL 177
           I  P +++P        + ++  +  +     +          +    +LI+++++G  +
Sbjct: 711 IGLPVLVRPSYVLGGRAMEIVYSEDELRSAFSRLVDLAAEGAISQDRPILIDRFLEG-AI 769

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V      +         +       +S  ++  + P  +   +  E++        A
Sbjct: 770 EVDVDAVRDREGACWIGAVMEHVEEAGVHSGDSACTIPPVSLAPALVAEIEAQTRAIADA 829

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    F        VF +E N +   T     P +A   G +  ++   +
Sbjct: 830 LDVVGLINVQFAV--ADGTVFVIEANPRASRT----VPFVAKATGVALVKIATRL 878


>gi|256821480|ref|YP_003145443.1| acetyl-CoA carboxylase, biotin carboxylase [Kangiella koreensis DSM
           16069]
 gi|256795019|gb|ACV25675.1| acetyl-CoA carboxylase, biotin carboxylase [Kangiella koreensis DSM
           16069]
          Length = 449

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV---------------LAHLKPDLAFNVLH-- 59
                 A  + G K   +    D  +  V               L++L      +     
Sbjct: 14  ALRILRACRELGIKTVAVHSTADEDLMHVRLADESVCIGPASAQLSYLNIPAIISAAEIT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  DAVGIHPGYGFLAENADFAEQVEQSGFTFIGPKADTIRLMGDKVSAIASMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V++++  +   +  + +      
Sbjct: 134 SDGPLGNNEKENIAMAKRIGYPVIIKAAGGGGGRGMRVVRQESELIKAIELTKAEAGSAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L  +             ++          PA    +  +
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVLADSHGNAIYLGERDCSMQRRHQKVVEEAPAPGISEQMR 253

Query: 226 -EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + IG RG    +FL+     + F++E+N +
Sbjct: 254 RHIGERCVQACKEIGYRGAGTFEFLY--EKGEFFFIEMNTR 292


>gi|212639697|ref|YP_002316217.1| pyruvate carboxylase [Anoxybacillus flavithermus WK1]
 gi|212561177|gb|ACJ34232.1| Pyruvate carboxylase [Anoxybacillus flavithermus WK1]
          Length = 1146

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/247 (12%), Positives = 81/247 (32%), Gaps = 17/247 (6%)

Query: 29  AGFKVSQIDVDRSVGLVLAHL-KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
            G K  +  +D    + +A +   D      +G   E+       E   I +        
Sbjct: 55  EGKKPIEAYLDIEGIIEIAKMHDVDAIHPG-YGFLSENIEFAKRCEEEGIIFIGPRQEHL 113

Query: 88  ALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            +  DK++++      G+PV P     +      +        P +IK   GG   G+ +
Sbjct: 114 DMFGDKVKARHQAKQAGIPVIPGSDGPVQSLEDVVRFGETYGYPMIIKAALGGGGRGMRI 173

Query: 144 IKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
           ++    +     ++ S     +   D  + +   +   +   ++GDA  ++  +      
Sbjct: 174 VRSQAEVKEAYERAKSEAKAAFGSDDVYVEKLIENPKHIEVQILGDAYGNIVHLYDRDCS 233

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 +             +  ++ +++   A    + +        +FL      + +
Sbjct: 234 VQ----RRHQKVVEVAPSVSLSKELREDICEAAVKLMKNVQYVNAGTVEFLV--SGDEFY 287

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 288 FIEVNPR 294


>gi|117618829|ref|YP_857836.1| acetyl-CoA carboxylase, biotin carboxylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
 gi|117560236|gb|ABK37184.1| acetyl-CoA carboxylase, biotin carboxylase [Aeromonas hydrophila
           subsp. hydrophila ATCC 7966]
          Length = 446

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP---DLAFN----------- 56
                 A ++ G K   +    DR +  VL         KP   D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGKPASTDSYLNVPAIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     ++E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ +  +   +  + S      
Sbjct: 134 SDGPVDSDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELSAAIALTKSEAGQFF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 KNDMVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KFIGERCVRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|108758762|ref|YP_633734.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus DK 1622]
 gi|108462642|gb|ABF87827.1| acetyl-CoA carboxylase, biotin carboxylase [Myxococcus xanthus DK
           1622]
          Length = 450

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/191 (13%), Positives = 61/191 (31%), Gaps = 26/191 (13%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+ V +    +     Q +      +      +   +    
Sbjct: 148 AERIGYPVLVKAASGGGGIGMAVARNAAEMEKVYRQCTDRAKAAFGKEGVYVERYFPAPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD    +      +        K      + +       ++ +++   A  A 
Sbjct: 208 HIEVQILGDQHGHLIHCLERECSIQRRHQKVVEEAPSVLFADGRNPELAQKLFTAAVAAA 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
           +A G       +FL+     +V+++E+N +              +       G    +L+
Sbjct: 268 KAFGYANAGTVEFLY--SDGEVYFIEMNAR----------LQVEHPVTELTTGL---DLI 312

Query: 290 LWMVEDASCLR 300
            W +  A+  R
Sbjct: 313 GWQLRIAAGER 323


>gi|332300279|ref|YP_004442200.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           asaccharolytica DSM 20707]
 gi|332177342|gb|AEE13032.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas
           asaccharolytica DSM 20707]
          Length = 1074

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G K   I+ +                       V  V+   +PD    
Sbjct: 29  SGSQALKAVKAEGIKTVLINPNIATVQTSEGVADAVYFLPVTPYFVERVIERERPDGIML 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +L+   I    + +     + D+    + +    V    S  
Sbjct: 89  AFGGQTALNCGVQLFQSGVLKRYGIDVLGTPVETIMATEDRELFVEKLDEIEVKTIQSHA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P +++       LG      D+ +   +L   ++    QLLIE+
Sbjct: 149 VTTMADALVAANQLGYPVIVRAAYALGGLGSGFCDNDEELR--VLAEKAFAFSPQLLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  D Y +++ +
Sbjct: 207 SLRGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNDEYHKLRTI 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  DP S     +E+N +  ++  S     +   GY    +  
Sbjct: 266 AIKIIRHLGVVGECNVQYALDPYSEDYRVIEVNAR--LSRSS--ALASKATGYPLAHVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KL 323


>gi|329313782|gb|AEB88195.1| Pyruvate carboxylase [Staphylococcus aureus subsp. aureus T0131]
          Length = 1152

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|308179019|ref|YP_003918425.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Arthrobacter arilaitensis Re117]
 gi|307746482|emb|CBT77454.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Arthrobacter
           arilaitensis Re117]
          Length = 686

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/283 (16%), Positives = 90/283 (31%), Gaps = 39/283 (13%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLV-----------------LAHLKPDLAFNVL------ 58
               L   G +   +  D     +                  ++L  D   +        
Sbjct: 22  IIRTLRALGIESVAVYSDADAQALHVTEADYAVRLGPAPANESYLDIDAVISACRQSGAQ 81

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                +G   E+      LE   I +    + +  L  DK+RSK  V +  VPV P I  
Sbjct: 82  AVHPGYGFLSENVDFARALEAAGITFIGPPVNSINLMGDKIRSKNHVVAHQVPVVPGIAE 141

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
              + +        I  P +IKP  GG   G+  ++    +P  L  +       +    
Sbjct: 142 PGLSDEQLLAAAADIGYPLLIKPSAGGGGKGMFAVESADQLPEALASARRTAANAFGDDT 201

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDI 223
             L     +   +   V+ DA  +   +     S    ++       +      +    I
Sbjct: 202 LFLERLVRNPRHIEVQVLADAQGNTVHLGERECSLQRRHQKVIEEAPAPLFENLEHGAAI 261

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQ 265
            + +   A  A Q++G  G    +FL    +  + F++E+N +
Sbjct: 262 RERIGAAAVAAAQSVGYVGAGTVEFLVSDENPDEFFFMEMNTR 304


>gi|300122043|emb|CBK22617.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300122548|emb|CBK23117.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300122873|emb|CBK23880.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300123976|emb|CBK25247.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
 gi|300123981|emb|CBK25252.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
          Length = 667

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 69/248 (27%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   K          D      +G   E+      LE   I +   
Sbjct: 72  EAVYIGPSPSAQSYLVADKIVEACRKTGADAVHPG-YGFLSENWRFAETLEKEGIIWCGP 130

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSS 138
           G  A     DK+ SK +     V   P       +        + I  P +IK   GG  
Sbjct: 131 GKYAIEAMGDKIGSKILAVKAKVNTIPGFNGEINSDEEVLRIANDIGYPVMIKASAGGGG 190

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +   D+        S             +++        +    L           
Sbjct: 191 KGMRIAWNDKEALSGFHLSKQEAKSAFGDDRMFIEKYIEEPRHIEIQVLGDKFGNYCAFP 250

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P+ +  +  +    + A +  +A+        +FL D      
Sbjct: 251 ERECSIQRRNQKVIEESPSVLLDEETRTAMGKQACMMAKAVNYCSAGTVEFLCDKHKN-F 309

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 310 YFLEMNTR 317


>gi|255262145|ref|ZP_05341487.1| methylcrotonoyl-CoA carboxylase subunit alpha [Thalassiobium sp.
           R2A62]
 gi|255104480|gb|EET47154.1| methylcrotonoyl-CoA carboxylase subunit alpha [Thalassiobium sp.
           R2A62]
          Length = 663

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 53/178 (29%), Gaps = 21/178 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   DQ        S +           +++        +   
Sbjct: 153 YPVMIKASAGGGGKGMRIAWSDQEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L  +       +     ++  +       P+    +  ++   + +     A+G     
Sbjct: 213 VLADSHGNTIYLNERECSIQRRNQKVVEEAPSPFLDEETRQAMGKQSCDLAAAVGYTSAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
             +F+ D   R  ++LE+N +              +       G    +L+  M+  A
Sbjct: 273 TVEFIVDG-DRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIRVA 316


>gi|151221191|ref|YP_001332013.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           Newman]
 gi|150373991|dbj|BAF67251.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           Newman]
          Length = 1156

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 73  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 131

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 132 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 191

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 192 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 251

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 252 PSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 300


>gi|87160348|ref|YP_493712.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|161509292|ref|YP_001574951.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221140486|ref|ZP_03564979.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|262048699|ref|ZP_06021581.1| pyruvate carboxylase [Staphylococcus aureus D30]
 gi|262052214|ref|ZP_06024420.1| pyruvate carboxylase [Staphylococcus aureus 930918-3]
 gi|282925298|ref|ZP_06332955.1| pyruvate carboxylase [Staphylococcus aureus A9765]
 gi|284024039|ref|ZP_06378437.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 132]
 gi|294848104|ref|ZP_06788851.1| pyruvate carboxylase [Staphylococcus aureus A9754]
 gi|304381328|ref|ZP_07363981.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|87126322|gb|ABD20836.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_FPR3757]
 gi|160368101|gb|ABX29072.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|259159885|gb|EEW44923.1| pyruvate carboxylase [Staphylococcus aureus 930918-3]
 gi|259163155|gb|EEW47715.1| pyruvate carboxylase [Staphylococcus aureus D30]
 gi|269940609|emb|CBI48988.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282592574|gb|EFB97584.1| pyruvate carboxylase [Staphylococcus aureus A9765]
 gi|294824904|gb|EFG41326.1| pyruvate carboxylase [Staphylococcus aureus A9754]
 gi|302750938|gb|ADL65115.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           str. JKD6008]
 gi|304340311|gb|EFM06252.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           BAA-39]
 gi|315196143|gb|EFU26500.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320141070|gb|EFW32917.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320143127|gb|EFW34917.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA177]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|57651723|ref|YP_185987.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus COL]
 gi|88194813|ref|YP_499610.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|57285909|gb|AAW38003.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus COL]
 gi|87202371|gb|ABD30181.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus NCTC
           8325]
 gi|329728847|gb|EGG65268.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21193]
 gi|329730746|gb|EGG67125.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 21189]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|49483277|ref|YP_040501.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MRSA252]
 gi|257425166|ref|ZP_05601592.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257427829|ref|ZP_05604227.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257430464|ref|ZP_05606846.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257433166|ref|ZP_05609524.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257436065|ref|ZP_05612112.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M876]
 gi|282903663|ref|ZP_06311551.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C160]
 gi|282905432|ref|ZP_06313287.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282908404|ref|ZP_06316235.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282913889|ref|ZP_06321676.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M899]
 gi|282918813|ref|ZP_06326548.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C427]
 gi|282923935|ref|ZP_06331611.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C101]
 gi|283957858|ref|ZP_06375309.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|293500925|ref|ZP_06666776.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293509881|ref|ZP_06668590.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|293526468|ref|ZP_06671153.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M1015]
 gi|295427602|ref|ZP_06820234.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297591444|ref|ZP_06950082.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MN8]
 gi|49241406|emb|CAG40090.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|257272142|gb|EEV04274.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 55/2053]
 gi|257274670|gb|EEV06157.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 65-1322]
 gi|257278592|gb|EEV09211.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 68-397]
 gi|257281259|gb|EEV11396.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus E1410]
 gi|257284347|gb|EEV14467.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M876]
 gi|282313907|gb|EFB44299.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C101]
 gi|282316623|gb|EFB46997.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C427]
 gi|282321957|gb|EFB52281.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M899]
 gi|282328069|gb|EFB58351.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           WW2703/97]
 gi|282330724|gb|EFB60238.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus Btn1260]
 gi|282595281|gb|EFC00245.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus C160]
 gi|283790007|gb|EFC28824.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           A017934/97]
 gi|290920540|gb|EFD97603.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M1015]
 gi|291095930|gb|EFE26191.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291467331|gb|EFF09848.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|295127960|gb|EFG57594.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|297576330|gb|EFH95046.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MN8]
 gi|315193782|gb|EFU24177.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus CGS00]
          Length = 1150

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|87125313|ref|ZP_01081159.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           RS9917]
 gi|86167082|gb|EAQ68343.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           RS9917]
          Length = 447

 Score = 48.7 bits (114), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 47/145 (32%), Gaps = 6/145 (4%)

Query: 124 ISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  P +IK   GG   G+ +     + QS+       +    G+  L  +          
Sbjct: 152 MGYPVMIKATAGGGGRGMRLVPGPNQLQSLFKAAQGEAEAAFGNPGLYMEKFIDRPRHVE 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A        V   +      +             +  ++ + +   A  A ++I  
Sbjct: 212 VQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPELRRRMGEAAVAAARSIQY 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +FL D  +   +++E+N +
Sbjct: 270 EGAGTVEFLLD-RNGGFYFMEMNTR 293


>gi|302883132|ref|XP_003040468.1| hypothetical protein NECHADRAFT_44732 [Nectria haematococca mpVI
           77-13-4]
 gi|256721352|gb|EEU34755.1| hypothetical protein NECHADRAFT_44732 [Nectria haematococca mpVI
           77-13-4]
          Length = 1231

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 57/183 (31%), Gaps = 19/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177
              +  P ++K   GG  +G+ +   +  +        S       +  +  +       
Sbjct: 149 ARRLGFPIMLKATGGGGGMGLQICHTEDEVEKAFAMVESRASTLFKNSGVFLEKYYPRSR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V    + +V      +        +            + P  + +++ + A      
Sbjct: 209 HVEVQVAGNGEVVVAFGERECSLQRRHQKVIEECPSPFVERHPG-LREKMLQAAIDYASQ 267

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           +  + +   +FL D  + K F+LE+N             +    G +   +  +L+  M+
Sbjct: 268 LNYKSVGTVEFLVDDETAKFFFLEMNT-----------RLQVEHGITELCYGVDLVHLML 316

Query: 294 EDA 296
           + A
Sbjct: 317 QQA 319


>gi|255730939|ref|XP_002550394.1| multifunctional urea amidolyase [Candida tropicalis MYA-3404]
 gi|240132351|gb|EER31909.1| multifunctional urea amidolyase [Candida tropicalis MYA-3404]
          Length = 1815

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/184 (10%), Positives = 56/184 (30%), Gaps = 20/184 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+  +  ++ I                    +++       
Sbjct: 762 AAKLEYPVMVKSTAGGGGIGLQKVDSEEDIERVFQTVQHQGKSYFGDSGVFLERFVENAR 821

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L   +            L+  +       PA    +    +++  A     ++ 
Sbjct: 822 HVEVQMLGDGKGHAIAVGERDCSLQRRNQKIIEETPAPNLPEATRTKMREAAESLGASMN 881

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     ++++D    + ++LE+N +              +       G    +L+ WM+
Sbjct: 882 YKCAGTVEYIYDAKRDEFYFLEVNAR----------LQVEHPITEMVTGL---DLVEWML 928

Query: 294 EDAS 297
             A+
Sbjct: 929 LIAA 932


>gi|254483025|ref|ZP_05096260.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
 gi|214036710|gb|EEB77382.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
          Length = 664

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+       E   + +      A  L  +K  +K+ +    VP  P        +
Sbjct: 84  YGFLSENADFACACEAAGLIFIGPSPDAIRLMGNKAEAKRRMLDAKVPCVPGYEGADQSD 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           R  +     IS P ++K   GG   G+ ++     +   +  + +         E  ++ 
Sbjct: 144 RALIAEGEKISAPLMVKAAAGGGGRGMRLVNDMAELVNAIKLARAEAESAFGNGELILEK 203

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +       T+            ++          P  +  D  +      A  
Sbjct: 204 AIVRPRHVEVQVFADTQGNTIHLGERDCSVQRRHQKVVEEAPCPVMTDTLRAEMGAAAVA 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A ++I  RG    +FL D      ++LE+N +
Sbjct: 264 AAKSIHYRGAGTVEFLLDEK-GTFYFLEMNTR 294


>gi|120435330|ref|YP_861016.1| biotin carboxylase [Gramella forsetii KT0803]
 gi|117577480|emb|CAL65949.1| biotin carboxylase [Gramella forsetii KT0803]
          Length = 480

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/231 (18%), Positives = 82/231 (35%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V   L  D      +G   E+      +E   I +   G  A  +   K+ +K  
Sbjct: 63  DKIIEVAKKLNVDGIHPG-YGFLSENASFAESVEKNGITWIGPGSEAIKVMGSKLAAKDA 121

Query: 100 VSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           V +  +P+ P I              + I  P +IK   GG   G+ V++K++ +   + 
Sbjct: 122 VKAYDIPMVPGIDEAITDTEKAKKIANEIGFPILIKASAGGGGKGMRVVEKEKELEDQMK 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S           +++    +   +    L  T             ++          
Sbjct: 182 RAISEAESAFGDGSVFIEKYVSSPRHIEIQVLADTHGNYVHLFERECSIQRRHQKVVEEA 241

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+ +    + KE+   A    +A    G    +FLFD  +RK ++LE+N +
Sbjct: 242 PSVVLDDKLRKEMGEAAVKVAKACDYVGAGTVEFLFDE-NRKFYFLEMNTR 291


>gi|12276064|gb|AAG50244.1|AF310338_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Mus musculus]
          Length = 717

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ ++     L  +       +N    L+ +     
Sbjct: 190 HAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTP 249

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 250 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGINPEVRRKLGEAAVRA 305

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 306 AKAVKYVGAGTVEFIMDSRHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 352

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 353 EWQLRIAAGEK 363


>gi|186700620|ref|NP_076133.3| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial [Mus
           musculus]
 gi|20138697|sp|Q99MR8|MCCA_MOUSE RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|12841549|dbj|BAB25253.1| unnamed protein product [Mus musculus]
 gi|26326991|dbj|BAC27239.1| unnamed protein product [Mus musculus]
 gi|74214446|dbj|BAE40458.1| unnamed protein product [Mus musculus]
          Length = 717

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/191 (14%), Positives = 64/191 (33%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ ++     L  +       +N    L+ +     
Sbjct: 190 HAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTP 249

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 250 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGINPEVRRKLGEAAVRA 305

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D      +++E+N       P         EM      +  +L+
Sbjct: 306 AKAVKYVGAGTVEFIMDSRHN-FYFMEMNTRLQVEHP-------VTEM-----ITGTDLV 352

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 353 EWQLRIAAGEK 363


>gi|89067605|ref|ZP_01155059.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola granulosus
           HTCC2516]
 gi|89046575|gb|EAR52630.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola granulosus
           HTCC2516]
          Length = 666

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 51/187 (27%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ +   D         S +           +++       
Sbjct: 148 AREVGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAAASFGDDRIFIEKFVTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L                ++  +       P+          +   A    QA+G
Sbjct: 208 HIEIQVLADGHGNCVYLHERECSIQRRNQKVIEEAPSPFLDPGTRAAMGAQAVALAQAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  R
Sbjct: 314 RVAAGER 320


>gi|186685649|ref|YP_001868845.1| D-alanine--D-alanine ligase domain-containing protein [Nostoc
           punctiforme PCC 73102]
 gi|186468101|gb|ACC83902.1| D-alanine--D-alanine ligase domain protein [Nostoc punctiforme PCC
           73102]
          Length = 348

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           I ++VQ++A   HQA+GCR  S  DF  DP   + ++LE  +     P S+   MA  AG
Sbjct: 266 ITQKVQQVAKRCHQALGCRHYSLFDFRIDPK-GQPWFLEAGLYCSFAPKSVISSMAKAAG 324

Query: 283 YSFRELLLWMVED 295
               +LL+  + +
Sbjct: 325 IPLNDLLITAINE 337


>gi|71899706|ref|ZP_00681858.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
 gi|71730501|gb|EAO32580.1| Acetyl-CoA carboxylase, biotin carboxylase [Xylella fastidiosa
           Ann-1]
          Length = 455

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/218 (15%), Positives = 71/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V+  +  +   +  +           
Sbjct: 137 PLGDDIVANVKIAREIGYPVIIKAAGGGGGRGMRVVHTEAGLEAAIETTQCEAKAAFGNG 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y++        +    L   +            ++          PA    + +  E+
Sbjct: 197 QVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEALRNEI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A   IG RG    +FLF   + + +++E+N +
Sbjct: 257 GQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|296814210|ref|XP_002847442.1| pyrABCN [Arthroderma otae CBS 113480]
 gi|238840467|gb|EEQ30129.1| pyrABCN [Arthroderma otae CBS 113480]
          Length = 2267

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 89/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 510 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKRERPDAIYV 569

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 570 TFGGQTALQVGIQLKDEFEELGVQVLGTPIDTIITTEDRELFARSMEAIGEKCAKSASAS 629

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + ++ +    L + ++    Q+LIE+ +
Sbjct: 630 NLEEAMEAVKNIGFPVIVRAAYALGGLGSGFAESNEQLRN--LCTKAFAASPQVLIERSM 687

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 688 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 746

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 747 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 796


>gi|259908230|ref|YP_002648586.1| phosphoribosylglycinamide formyltransferase 2 [Erwinia pyrifoliae
           Ep1/96]
 gi|224963852|emb|CAX55354.1| Phosphoribosylglycinamide formyltransferase 2 [Erwinia pyrifoliae
           Ep1/96]
 gi|283478161|emb|CAY74077.1| phosphoribosylglycinamide formyltransferase 2 [Erwinia pyrifoliae
           DSM 12163]
          Length = 392

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D            RS          +  ++A  KPD     +
Sbjct: 24  GKEVALECQRLGVETIAVDRYADAPAMQVAHRSYVINMLDGAALAALIAKEKPDFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVELEKQGQNVVPTARAARLTMNREGIRRLAAEELQLPT-SDYRFADSYDAFC 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G   I+K   +        +   G        V+G+   
Sbjct: 143 SAAQAIGFPCIIKPVMSSSGKGQSFIRKAAQLANA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  +++A     A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSQLALQRARQIAEKVVAAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVVFSEVSPRPHDTGM 289


>gi|1143222|gb|AAA85742.1| acetyl-CoA carboxylase biotin carboxylase subunit [Glycine max]
          Length = 289

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCG 180
            P ++K   GG   G+ V+ ++  +      +      S+ +    + +   +   +   
Sbjct: 147 YPVILKATAGGGGEGMRVVWEESELERAYNTAKAEAAASFKNDGIYMEKFVEEPRHIEIQ 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V GD   +V  ++           +             +  ++ +++   A  A  AI  
Sbjct: 207 VAGDQYGNVCHLSERDCSIQ----RRHQKLVEESPSPFMTDELREKMGAAAIKAASAINY 262

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
             +   +FL D      +++E+N +
Sbjct: 263 ESVGTIEFLVDKHRN-FYFMEMNTR 286


>gi|294790485|ref|ZP_06755643.1| acetyl-CoA carboxylase alpha chain [Scardovia inopinata F0304]
 gi|294458382|gb|EFG26735.1| acetyl-CoA carboxylase alpha chain [Scardovia inopinata F0304]
          Length = 639

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 43/147 (29%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD-QLLIEQYVDGIELT 178
                  P ++K   GG   GI VI+ +  +        S    D      +        
Sbjct: 146 FATDYGYPVMMKRTDGGGGRGITVIRDEDELRAFYSAHDSLQGSDLSKYFIEKFVPRARH 205

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                              D      + +           I   +  +++  +     ++
Sbjct: 206 VETQCGRDSQGNFTVYSTRD--CSVQRRNQKLIEEAPAPFINEKVEAKLKTYSRRLFDSV 263

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G+   +F+  P S  V++LE+N +
Sbjct: 264 GYVGLGTCEFMVTPTSD-VYFLEVNPR 289


>gi|302661590|ref|XP_003022461.1| hypothetical protein TRV_03411 [Trichophyton verrucosum HKI 0517]
 gi|291186407|gb|EFE41843.1| hypothetical protein TRV_03411 [Trichophyton verrucosum HKI 0517]
          Length = 2248

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 476 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKRERPDAIYV 535

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 536 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEVIGEKCAKSASAS 595

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 596 NLEEAMEAVRGIGFPVIVRAAYALGGLGSGFAENDDQLRD--LCTKAFAASPQVLIERSM 653

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 654 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 712

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 713 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 762


>gi|302499935|ref|XP_003011962.1| hypothetical protein ARB_01717 [Arthroderma benhamiae CBS 112371]
 gi|291175517|gb|EFE31322.1| hypothetical protein ARB_01717 [Arthroderma benhamiae CBS 112371]
          Length = 2241

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 476 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKRERPDAIYV 535

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 536 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEVIGEKCAKSASAS 595

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 596 NLEEAMEAVRGIGFPVIVRAAYALGGLGSGFAENDDQLRD--LCTKAFAASPQVLIERSM 653

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 654 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 712

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 713 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 762


>gi|270263295|ref|ZP_06191565.1| hypothetical protein SOD_d03120 [Serratia odorifera 4Rx13]
 gi|270042983|gb|EFA16077.1| hypothetical protein SOD_d03120 [Serratia odorifera 4Rx13]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQIERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSIAMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGERCSKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|255012738|ref|ZP_05284864.1| pyruvate carboxylase subunit A [Bacteroides sp. 2_1_7]
 gi|301308028|ref|ZP_07213982.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
 gi|300833498|gb|EFK64114.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           20_3]
          Length = 503

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +I +   +      + S +         Y++       
Sbjct: 148 CEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYHTARSESLSSFGDDTVYIEKFVEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     D+ KE+   A  A +A+ 
Sbjct: 208 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTADLRKEMGEKAVAAAKAVH 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D   R  ++LE+N +
Sbjct: 268 YSGAGTIEFLVD-KDRHFYFLEMNTR 292


>gi|253991181|ref|YP_003042537.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photorhabdus
           asymbiotica subsp. asymbiotica ATCC 43949]
 gi|253782631|emb|CAQ85795.1| biotin carboxylase [Photorhabdus asymbiotica]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/281 (15%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETICIGPAASAKSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLSDDMEKNKTIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L   +            ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVLADGQGQAIYLAERDCSMQRRHQKVVEEAPAPGITPEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RSIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|257068643|ref|YP_003154898.1| carbamoyl-phosphate synthase large subunit [Brachybacterium faecium
           DSM 4810]
 gi|256559461|gb|ACU85308.1| carbamoyl-phosphate synthase large subunit [Brachybacterium faecium
           DSM 4810]
          Length = 1117

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/301 (12%), Positives = 95/301 (31%), Gaps = 31/301 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ + +                     +  ++   +PD    
Sbjct: 29  SGTQACRVLREEGLRVILVNSNPATIMTDPEIADATYVEPIEPEIIRSIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV----QAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE L +    + + A   + D+   K+VV   G     S +
Sbjct: 89  TLGGQTALNAAIALAENGTLEELGVEMIGASLEAINKAEDRQLFKEVVERVGGESARSRI 148

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +      ++   +  P V++P      LG  +   +  +         ++  +++L+E+
Sbjct: 149 CHSMDELLEAADELGYPMVVRPSFTMGGLGSGMAYDEADLRRIGGDGLHYSPTNEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D   +     +     +      +         +++       
Sbjct: 209 SILGWKEFELELMRDSADNCVVVCSIENVDPVGVHTGDSVTVAPALTLTDVEMQTLRDLG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +  +     G     F   P + +V  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAIIREVGVDTGGCNVQFATHPETGRVVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 W 291
            
Sbjct: 325 R 325


>gi|229168686|ref|ZP_04296408.1| Pyruvate carboxylase [Bacillus cereus AH621]
 gi|228614842|gb|EEK71945.1| Pyruvate carboxylase [Bacillus cereus AH621]
          Length = 1148

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/240 (13%), Positives = 76/240 (31%), Gaps = 11/240 (4%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 61  KPIDAYLDIEGIIEIAKSNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPKSKHLDMF 119

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++       +P+ P     +       +       P +IK   GG   G+ +++ 
Sbjct: 120 GDKVKARTQAQLAQIPIIPGSDGPVNSIEEVEEFAEKYDYPIIIKASLGGGGRGMRIVRA 179

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
            + +     ++ S         E YV+        +    L   E  V         ++ 
Sbjct: 180 SEELRESYNRAKSEAKAAFGNDEVYVEKFVEKPKHIEVQILADEEGNVVHLYERDCSVQR 239

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  + P+    D + + +   A    + +        +FL      + +++E+N +
Sbjct: 240 RHQKVVEIAPSVSLSDGLRQRICDAAVKLTKNVNYLNAGTVEFLV--KGDEFYFIEVNPR 297


>gi|71282292|ref|YP_268342.1| methylcrotonyl-CoA carboxylase subunit alpha [Colwellia
           psychrerythraea 34H]
 gi|71148032|gb|AAZ28505.1| methylcrotonyl-CoA carboxylase, alpha subunit [Colwellia
           psychrerythraea 34H]
          Length = 681

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 54/183 (29%), Gaps = 19/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  +  +      L  +              V+       
Sbjct: 148 ADDMGYPVLLKATAGGGGKGMRQVWSEAEFDEGLAAAKREAMSSFGDDTMLVEKYLTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     ++          P   +  ++  ++   A  + QAIG
Sbjct: 208 HVEIQVFCDNHENAVYLFERDCSVQRRHQKVIEEAPAFSMSEELRAQMGESAIKSAQAIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +G    +FL D      +++E+N       P         EM      S ++L+ W + 
Sbjct: 268 YQGAGTVEFLLDI-DGSFYFMEMNTRLQVEHP-------VTEM-----ISGQDLVEWQLR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|148255593|ref|YP_001240178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
 gi|146407766|gb|ABQ36272.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Bradyrhizobium sp. BTAi1]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  ++  M     I  P ++K   GG   G+ V   +  + L L  +++        
Sbjct: 135 DGAVTPDQDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTEADLQLALTTAANEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L                L+          P+ +     +  
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPVLDAAARAK 254

Query: 228 Q-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGNTVAKAMQELKYIGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|325003226|ref|ZP_08124338.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Pseudonocardia sp. P1]
          Length = 667

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+ +++    +   +  +             +++      
Sbjct: 151 MADGIGYPLLVKAAYGGGGRGMRIVRAADEVVDAVTGARREATSAFGNGTVFLERYVEDP 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +       T   V         ++          P+    D +  ++   A  A  AI
Sbjct: 211 RHVEVQIFGDTHGTVVHLFERECSIQRRYQKIIEEAPSPAVDDALRAQLGDAAVAAGAAI 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +F+  P   + F+LE+N +
Sbjct: 271 GYTGAGTVEFVMAP-DGEFFFLEVNTR 296


>gi|313672530|ref|YP_004050641.1| biotin carboxylase [Calditerrivibrio nitroreducens DSM 19672]
 gi|312939286|gb|ADR18478.1| biotin carboxylase [Calditerrivibrio nitroreducens DSM 19672]
          Length = 505

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K + GG   G+ ++ K++        +SS         + Y++   +   
Sbjct: 149 AREIGYPIMLKAVYGGGGKGMRLVHKEEDFESSFRMASSEALNAFGNGDVYMEKFIVQPH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  +  +++ ++A  A + IG
Sbjct: 209 HVEIQVLGDMHGNAIHLFDRECSIQRRHQKVIEEAPSPFISKETREKMCKVAAEAIRKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+     +  ++LE+N +
Sbjct: 269 YYSAGTLEFIV-GADQNFYFLEMNTR 293


>gi|254291681|ref|ZP_04962468.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           AM-19226]
 gi|150422365|gb|EDN14325.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           AM-19226]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVENIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|229521344|ref|ZP_04410763.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae TM
           11079-80]
 gi|297578824|ref|ZP_06940752.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           RC385]
 gi|229341442|gb|EEO06445.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae TM
           11079-80]
 gi|297536418|gb|EFH75251.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           RC385]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVENIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|120405630|ref|YP_955459.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           vanbaalenii PYR-1]
 gi|171769188|sp|A1TE53|PURT_MYCVP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|119958448|gb|ABM15453.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Mycobacterium vanbaalenii PYR-1]
          Length = 400

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/275 (13%), Positives = 83/275 (30%), Gaps = 27/275 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           G+    AL+  G +   +D                    D   +  ++   +PDL    +
Sbjct: 24  GREVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMTDPDQLRALIEAERPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          +   IP   +  L       +  + + +     P      +   T
Sbjct: 84  EAIATPALEALEAEGVTTVIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLEELT 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
              +  I  P V+KP+   S  G   I   + +      + S +   +  +I +     +
Sbjct: 144 AAIEGGIGYPCVVKPVMSSSGKGQSKIDGPEGVAAAWEYAMSGSRVSNTRIIVEGFVDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +         +        + S        P  +P    +  +++A    +
Sbjct: 204 YEITLLTVRARGADGEIETRFCEPIGHRQVSGDYVESWQPHPMPGTALERARQIAGAVTR 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
            +G +GI   +        +V++ E++ +P   GM
Sbjct: 264 DLGGQGIFGVELFV--KGDQVWFSEVSPRPHDTGM 296


>gi|83721099|ref|YP_441709.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis E264]
 gi|167580523|ref|ZP_02373397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis TXDOH]
 gi|167618632|ref|ZP_02387263.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis Bt4]
 gi|257137878|ref|ZP_05586140.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           thailandensis E264]
 gi|83654924|gb|ABC38987.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           thailandensis E264]
          Length = 455

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SDGALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|21282726|ref|NP_645814.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49485952|ref|YP_043173.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MSSA476]
 gi|297208248|ref|ZP_06924678.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300912325|ref|ZP_07129768.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH70]
 gi|21204164|dbj|BAB94862.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus MW2]
 gi|49244395|emb|CAG42823.1| putative pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|296886987|gb|EFH25890.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus ATCC
           51811]
 gi|300886571|gb|EFK81773.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH70]
          Length = 1150

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 70/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEYGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|86134885|ref|ZP_01053467.1| acetyl-CoA carboxylase, biotin carboxylase [Polaribacter sp.
           MED152]
 gi|85821748|gb|EAQ42895.1| acetyl-CoA carboxylase, biotin carboxylase [Polaribacter sp.
           MED152]
          Length = 446

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/252 (13%), Positives = 76/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     + E   I +  +
Sbjct: 47  EAVCIGPAPSSESYLKMSNIIAAAEITNADAIHPG-YGFLSENAKFSNLCEEHNIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  +K  + + GVP  P     I               P ++K   GG  
Sbjct: 106 TGKMIDQMGDKANAKSTMIAAGVPCVPGSEGVIKDFEDCEKLAVETGYPVMLKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + + D  + +   +   +   ++GD+      ++
Sbjct: 166 KGMRAVWKPEDLKDAWDSARQESKAAFGNDDMYMEKLIEEPRHIEIQIVGDSFGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +  ++  ++   A  A + IG  G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDELRDKMGEAAVKAAEYIGYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|295398040|ref|ZP_06808096.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
 gi|294973798|gb|EFG49569.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +   + I +         L  DK  ++  +++  V   P    
Sbjct: 77  AIHPGFGFLAENSKFAKLCAEMNIEFIGPSPEVIDLMGDKQNARDTMNAAKVQTVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++    +  P ++K   GG   G+ ++ ++        ++S           
Sbjct: 137 ILESPGAGIEIAKKVGYPVLLKATSGGGGKGMRMVHEESHFADAYYEASREAKNAFGDDR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++ +      +    L      V         ++ +        P+    +    +V 
Sbjct: 197 LYMEKVIFPAHHIEVQILGDKFGNVIHLGERECSMQRNHQKVIEETPSPFITEKTRTQVT 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A + +        +FL D   +  +++E+N +
Sbjct: 257 QAAVRAAEQLNYESAGTIEFLVDA-DQNYYFMEMNTR 292


>gi|116253161|ref|YP_768999.1| carbamoyl phosphate synthase large subunit [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115257809|emb|CAK08907.1| putative carbamoyl-phosphate synthase large chain [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 1162

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 88/335 (26%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T   ++ 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARMVATEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G          ++    ++     
Sbjct: 795 EGQLQSYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLSNAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  + +++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRSLSVELLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.9 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++L+E+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLVEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAAKL 379


>gi|293366897|ref|ZP_06613573.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
 gi|291319198|gb|EFE59568.1| pyruvate carboxylase [Staphylococcus epidermidis M23864:W2(grey)]
          Length = 1151

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 264 DAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|282876433|ref|ZP_06285300.1| pyruvate carboxylase [Staphylococcus epidermidis SK135]
 gi|281295458|gb|EFA87985.1| pyruvate carboxylase [Staphylococcus epidermidis SK135]
 gi|329732701|gb|EGG69050.1| pyruvate carboxylase [Staphylococcus epidermidis VCU144]
 gi|329736222|gb|EGG72494.1| pyruvate carboxylase [Staphylococcus epidermidis VCU028]
          Length = 1149

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 260 DAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|302526050|ref|ZP_07278392.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
 gi|302434945|gb|EFL06761.1| acetyl-CoA carboxylase, biotin carboxylase [Streptomyces sp. AA4]
          Length = 452

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 48/278 (17%), Positives = 86/278 (30%), Gaps = 27/278 (9%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL---------AHLKP 51
           +AV+     SE +    S    A AL     +V  I    +    L              
Sbjct: 28  VAVV-----SEAD---RSA---AHALLAD--QVVPIGPAPATKSYLVADAILAAAKETGA 74

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E     A +    + +            DK+R++QV  + GVP  P  
Sbjct: 75  DAVHPG-YGFLSERASFAAAVADAGLTFVGPEASVIEQMGDKVRARQVAQAAGVPTVPGT 133

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      + +   I  P ++K   GG   GI V+  +  + +   Q+S         
Sbjct: 134 PGGVSDVAEAVAAAGEIGYPIMLKAAAGGGGRGIRVVANEAELKVAFPQASGEAASAFGD 193

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L      V   +      +             I   I   +
Sbjct: 194 GRMYLERFVRAARHVEVQVLGDGSETVHVFERECSLQRRRQKVVEEAPSPGIDERIRAGM 253

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A    + +G R     +FL D  + + F++E+N +
Sbjct: 254 TAAAVRLCKEVGYRSAGTCEFLVDDDTGEFFFIEMNTR 291


>gi|251810568|ref|ZP_04825041.1| pyruvate carboxylase [Staphylococcus epidermidis BCM-HMP0060]
 gi|251805728|gb|EES58385.1| pyruvate carboxylase [Staphylococcus epidermidis BCM-HMP0060]
          Length = 1153

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 264 DAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|224823423|ref|ZP_03696532.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
 gi|224603878|gb|EEG10052.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+ ++Q +   +  + S           Y++       
Sbjct: 149 ARRIGYPVIIKAAGGGGGRGMRVVHQEQDLLTSVETTRSEAGAAFGNPTVYMEKFLEQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  +  +++      A + IG
Sbjct: 209 HIEIQVLADQHGHAIYLGERDCSMQRRHQKVIEEAPAPGISAEQRRQIGEACADACRRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FLF   + + +++E+N +
Sbjct: 269 YRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|167564151|ref|ZP_02357067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           oklahomensis EO147]
 gi|167574654|ref|ZP_02367528.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           oklahomensis C6786]
          Length = 455

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SDGALPDDPKEIVKIARSVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 194 GNPQVYMEKFLENPRHIEIQVLADSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|159185349|ref|NP_355659.2| pyruvate carboxylase [Agrobacterium tumefaciens str. C58]
 gi|159140602|gb|AAK88444.2| pyruvate carboxylase [Agrobacterium tumefaciens str. C58]
          Length = 1153

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 52/147 (35%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   G+  I+K + +  ++ ++           E Y++ +    
Sbjct: 155 MAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLVERA 214

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +       PA    +   +E+   +     A 
Sbjct: 215 RHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAAT 274

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    ++L D  + K +++E+N +
Sbjct: 275 NYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|57866651|ref|YP_188287.1| pyruvate carboxylase [Staphylococcus epidermidis RP62A]
 gi|57637309|gb|AAW54097.1| pyruvate carboxylase [Staphylococcus epidermidis RP62A]
 gi|329734434|gb|EGG70747.1| pyruvate carboxylase [Staphylococcus epidermidis VCU045]
          Length = 1147

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 80  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 139

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 140 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 199

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 200 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 259

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 260 DAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|71909613|ref|YP_287200.1| Acetyl-CoA carboxylase, biotin carboxylase [Dechloromonas aromatica
           RCB]
 gi|71849234|gb|AAZ48730.1| Acetyl-CoA carboxylase, biotin carboxylase [Dechloromonas aromatica
           RCB]
          Length = 667

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 53/183 (28%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D           +           +++   L   
Sbjct: 148 AQGIGYPVMIKASAGGGGKGLRVAYNDAEAHEGFSSCVNEARNSFGDDRVFIEKYVLEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L  +       +     ++          P   +  ++ K +   A    +A+ 
Sbjct: 208 HIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIEEAPSPFVDPEMRKAMGEQAVALARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+    +++ ++LE+N +              +       G    +L+  M+
Sbjct: 268 YESAGTVEFVVSGATKEFYFLEMNTR----------LQVEHPVTELITGL---DLVEQMI 314

Query: 294 EDA 296
             A
Sbjct: 315 RVA 317


>gi|27467731|ref|NP_764368.1| pyruvate carboxylase [Staphylococcus epidermidis ATCC 12228]
 gi|27315275|gb|AAO04410.1|AE016746_200 pyruvate carboxylase [Staphylococcus epidermidis ATCC 12228]
          Length = 1153

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +    +    +  DK++++    +  +PV P    
Sbjct: 84  AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAINANLPVIPGTDG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          +    P +IK   GG   G+ ++++   +     ++ S         E
Sbjct: 144 PIESFEAAEQFANEAGYPLMIKATSGGGGKGMRIVRESSELEDAFHRAKSEAEKSFGNSE 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 204 VYIERYIDNPKHIEVQVIGDEFGNIIHLYERDCSVQRRHQKVVEVAPSVGLSNKLRERIC 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A    + I        +FL      + F++E+N +
Sbjct: 264 DAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|22299351|ref|NP_682598.1| acetyl-CoA carboxylase biotin carboxylase subunit
           [Thermosynechococcus elongatus BP-1]
 gi|22295534|dbj|BAC09360.1| biotin carboxylase [Thermosynechococcus elongatus BP-1]
          Length = 453

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKITFIGPSPAAMRAMGDKSTAKATMQRVGVPTIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P +IK   GG   G+ +++ ++ +   L  +            
Sbjct: 138 LVQDEETARAIARQIGYPLMIKATAGGGGRGMRLVRSEEELGRSLSAAQGEAEAAFGNAG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++          P+     ++  ++ 
Sbjct: 198 VYLERFIENPRHIEFQILADSYGNVIHLGERDCSVQRRHQKLLEEAPSPALTPELRAKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +AI   G    +FL D  +   +++E+N +
Sbjct: 258 EAAVTAAKAINYVGAGTIEFLLDGQNN-FYFMEMNTR 293


>gi|28377471|ref|NP_784363.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum WCFS1]
 gi|28270303|emb|CAD63204.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum WCFS1]
          Length = 440

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 20/263 (7%)

Query: 21  ACASALED-AGF-----KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDG 66
           A  S  +  AG+     +V  I    + G  L      +A    H        G   E+ 
Sbjct: 30  AVCSTADRHAGYTQLADEVVCIGPAAASGSYLNAEAILMAAINTHADAIHPGYGFLAENA 89

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQH 122
              A+     I +         L  DK R+K       VPV                +  
Sbjct: 90  DFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSLQGLAWPDIKHAAA 149

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V+K   GG   GI V+     +   L  +        L    Y++    T   +
Sbjct: 150 KIGFPLVLKASYGGGGKGIRVLTNVHELHQQLRAARQEAAASFLNDAMYLEQFLTTARHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L          D       +          + +     + +  L+         + 
Sbjct: 210 EVQVLGTGTKLFILGDRDCSLQLHKQKVLEESSASILTETQRRTLYDLSRQLLAGTHYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++LF     + +++E+N +
Sbjct: 270 LGTIEYLF--ADGQFYFMEMNTR 290


>gi|326335080|ref|ZP_08201279.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692744|gb|EGD34684.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 950

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTVLINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ + + ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAIQITEDREKFRVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TAMSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDRNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 80/255 (31%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+    +    +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFWEY---IYDIIQHEKPEGVIVQLGGQTALKLAEKLDKYGIKIIGTSFQSLD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +    ++   P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSTLLKENNIPYPRFGVAETADEALKLSDELDFPLLVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KEELEAHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F        V+ +E N +
Sbjct: 800 ---DSNATLPPFNLGEFVIQQIKDHTQKIALALNTVGLINVQFAV--KDDVVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P ++  
Sbjct: 855 ASRT----VPFISKA 865


>gi|298374354|ref|ZP_06984312.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
 gi|298268722|gb|EFI10377.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
          Length = 512

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 73/231 (31%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++         D      +G   E+       +   + +            DK+ +++ 
Sbjct: 73  DNLIAAAKRHHADAIHPG-YGFLSENADFARCCKQEGLIFIGPSAETMEAMGDKIAARKR 131

Query: 100 VSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           + +  VPV P            +     I  P ++K   GG   G+ +I +   +     
Sbjct: 132 MIAAEVPVVPGTEQPLQSAEEALRVCEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYH 191

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S +         Y++        +    L      V         ++  +       
Sbjct: 192 TARSESLSSFGDDTVYIEKFVEEPHHIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEES 251

Query: 216 PAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+     D+ KE+   A  A +A+   G    +FL D   R  ++LE+N +
Sbjct: 252 PSPFLTADLRKEMGEKAVAAAKAVHYSGAGTIEFLVD-KDRHFYFLEMNTR 301


>gi|256838806|ref|ZP_05544316.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|256739725|gb|EEU53049.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
          Length = 512

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +I +   +      + S +         Y++       
Sbjct: 157 CEEIGFPVMLKASMGGGGKGMRLIHEKGEVVEAYHTARSESLSSFGDDTVYIEKFVEEPH 216

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+     D+ KE+   A  A +A+ 
Sbjct: 217 HIEFQILGDNHGNVIHLFDRECSVQRRNQKIVEESPSPFLTADLRKEMGEKAVAAAKAVH 276

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D   R  ++LE+N +
Sbjct: 277 YSGAGTIEFLVD-KDRHFYFLEMNTR 301


>gi|226288933|gb|EEH44445.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb18]
          Length = 1244

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K   GG  +G++    ++ +        S           +++    +   +
Sbjct: 152 KLGFPVMLKATAGGGGMGLLTCHSEEEVRESFTTVKSRGEALFKNGGMFIERYYPSSHHI 211

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIG 239
                                ++          P+       ++ +++   A    ++  
Sbjct: 212 EVQVFGNGLGKAIHFGERECSIQRRHQKVVEECPSPFVTKHPELRQKLCDAAVRLAESTK 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L D  +   F+LE+N +
Sbjct: 272 YASAGTIEYLVDDDTGDFFFLEMNTR 297


>gi|224006856|ref|XP_002292388.1| hypothetical protein THAPSDRAFT_263480 [Thalassiosira pseudonana
           CCMP1335]
 gi|220972030|gb|EED90363.1| hypothetical protein THAPSDRAFT_263480 [Thalassiosira pseudonana
           CCMP1335]
          Length = 683

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 64/193 (33%), Gaps = 22/193 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVD 173
              H I  P +IK   GG   G+ +   D  +            S +     L+ +   D
Sbjct: 145 QIAHEIGYPVMIKASSGGGGKGMRICYTDAQVEEGYRLGSAEAKSFFGDDRLLVEKYVED 204

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
              +   V+   +    E+ +         ++  +       P+        +E+ R   
Sbjct: 205 PHHIEIQVLSGKNPKTGELDILCFAERECSIQRRNQKVIEESPSPHLHPSTRREMIRQVK 264

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY---S 284
              + +        +FL D   +  ++LE+N       P         EM +  GY   +
Sbjct: 265 SLVREVNYESAGTVEFLVD-KDQNFYFLEMNTRLQVEHP-------VTEMISGDGYHSGN 316

Query: 285 FRELLLWMVEDAS 297
           + +L+  M+E A+
Sbjct: 317 YVDLVHGMLEVAA 329


>gi|157123307|ref|XP_001660108.1| carbamoyl-phosphate synthase large chain [Aedes aegypti]
 gi|108874420|gb|EAT38645.1| carbamoyl-phosphate synthase large chain [Aedes aegypti]
          Length = 1361

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 419 SGSQAIKALKEERIQTVLINPNIATVQTSKGLADKVYFLPLTPNYVEQVIKAERPGGVLL 478

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + IL+   + D+    + V+     V    +
Sbjct: 479 TFGGQTALNCGIELQRAGIFDRYNVKIMGTPILSIIETEDRKIFAERVAEIGEKVAPSDA 538

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   I  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 539 VYSVQEALDAAEKIGYPVMARAAFALGGLGSGFANNREEL--KVLAQQALAHSNQLIIDK 596

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 597 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 655

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 656 AIKVIRHFGVVGECNIQYALNPFSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 711

Query: 291 WM 292
            +
Sbjct: 712 KL 713


>gi|70728471|ref|YP_258220.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens Pf-5]
 gi|123734895|sp|Q4KHR3|PURT_PSEF5 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|68342770|gb|AAY90376.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens Pf-5]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGAALRAVIEAEKPHFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELEAEGFTVIPTARATSLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYS 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++    +        +   G        ++G    
Sbjct: 143 RAVQDLGFPCVVKPVMSSSGKGQSLLRSVDDVQKA--WDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHVGGTTFCAPVGHRQEKGDYQESWQPQAMSPKALAESERVAKAVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFI--KGDQVWFSEVSPRP 284


>gi|294676468|ref|YP_003577083.1| propionyl-CoA carboxylase subunit alpha [Rhodobacter capsulatus SB
           1003]
 gi|294475288|gb|ADE84676.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacter capsulatus SB
           1003]
          Length = 661

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/273 (15%), Positives = 82/273 (30%), Gaps = 27/273 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     +      +G   E     A LE   + +      A     DK+ 
Sbjct: 55  IVIDK-IMDAIRQTGAEAVHPG-YGFLSERMDFAAALEKEGVIFVGPPSPAIEAMGDKIT 112

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++    GV   P  +      D    IS     P +IK   GG   G+ +    +   
Sbjct: 113 SKKLAQEAGVSTVPGYMGLIADADEAVKISDQIGYPVMIKASAGGGGKGMRIAWNAEEAR 172

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L          +     ++  +   
Sbjct: 173 EGFQSSKNEAAASFGDDRIFIEKFVTQPRHIEIQVLADQHGNCVYLNERECSIQRRNQKV 232

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+        K +   A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 233 IEEAPSPFLDPATRKAMGEQACALAKAVGYTSAGTVEFIVDG-NRNFYFLEMNTR----- 286

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDAS 297
                    +       G    +L+  M+  A+
Sbjct: 287 -----LQVEHPVTELITGI---DLVEMMIRVAA 311


>gi|292492139|ref|YP_003527578.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nitrosococcus halophilus Nc4]
 gi|291580734|gb|ADE15191.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Nitrosococcus halophilus Nc4]
          Length = 472

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV----CP 109
            +H   G   E+  +    E   I +            DK+ ++  + + G+P+      
Sbjct: 76  AIHPGYGFLSENPHLAERCEQYGIRFVGPPAQVIHRLGDKIEARHTMEAAGIPIVPGSHT 135

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           S+      +     I  P ++K   GG   GI        +  +  +  S         +
Sbjct: 136 SLGGVDEALSLAEQIGYPVMLKATAGGGGRGIRRCNSPLELSRNYERVVSEAQKAFGSTK 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            +++   +    +    L   +            ++        + P+    +  +    
Sbjct: 196 VFLEKCVVNPRHIEVQVLADHQGHAIHLFERDCSIQRRHQKLIEIGPSPQLSEKQRATIG 255

Query: 230 L-AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A+G R     +FL D      +++E+N +
Sbjct: 256 KLAVKACRAVGYRNAGTVEFLLDAQGN-FYFMEMNTR 291


>gi|254498604|ref|ZP_05111323.1| carbamoyl-phosphate synthase large subunit [Legionella drancourtii
           LLAP12]
 gi|254352144|gb|EET10960.1| carbamoyl-phosphate synthase large subunit [Legionella drancourtii
           LLAP12]
          Length = 872

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/266 (10%), Positives = 88/266 (33%), Gaps = 13/266 (4%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+   +     V  ++   +PD       G              ++I  T    + 
Sbjct: 416 DRLYFEPVTL---EDVLAIVDVEQPDGVIVHYGGQTPLKLARALEANGVKIIGTSPDAID 472

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   ++ +          P   ++      +   + I  P V++P        + ++ +
Sbjct: 473 MAEDRERFQKLVTELRLHQPDNGTVRSEEEAIALANKIGYPLVVRPSYVLGGRAMEIVYQ 532

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           ++ +   L  + + ++   +L++++  D IE+    + D    +    +   +       
Sbjct: 533 EEDLRHYLSHAVAVSNDSPVLLDRFLNDAIEVDIDAICDGKEVLIGAVMEHIEQAGIHSG 592

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  + + + +++          +G  G+  + F        ++ LE+N +
Sbjct: 593 ---DSACTLPPFSLSVVVQQDLMEQMRQMALKLGVVGLINAQFAIQADD--IYVLEVNPR 647

Query: 266 PGMTPVSIFPEMAAYAGYSFRELLLW 291
              T     P ++   G    ++   
Sbjct: 648 ASRT----VPFVSKATGLPLAKIAAR 669


>gi|206579288|ref|YP_002236329.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella pneumoniae
           342]
 gi|288933317|ref|YP_003437376.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|290511633|ref|ZP_06551002.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella sp. 1_1_55]
 gi|206568346|gb|ACI10122.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella pneumoniae
           342]
 gi|288888046|gb|ADC56364.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella variicola
           At-22]
 gi|289776626|gb|EFD84625.1| acetyl-CoA carboxylase, biotin carboxylase [Klebsiella sp. 1_1_55]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK----------------PDLAF----- 55
                 A ++ G K   +    DR +  VL   +                P +       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAIAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|172056611|ref|YP_001813071.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
 gi|171989132|gb|ACB60054.1| carbamoyl-phosphate synthase, large subunit [Exiguobacterium
           sibiricum 255-15]
          Length = 1010

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 46/330 (13%), Positives = 101/330 (30%), Gaps = 54/330 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           +AVL  G        +  G+             AL+ AG++   I+ +            
Sbjct: 550 VAVLGAGP-------IRIGQGIEFDYCSVHAVRALQKAGYETIMINNNPETVSTDFEVAD 602

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
                      V  VL   +         G        +      ++  T +  +     
Sbjct: 603 RLYVEPLTIEDVVHVLEAEQCRQVLVQFGGQTAITLAAELEELGYQLLGTTADTIDEMED 662

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D+             +   +            +  P +I+P       G+  +     +
Sbjct: 663 RDRFYQFLDRLQIDRILGQEVSNEEELTAIVKELGYPLMIRPSYVIGGKGMHRLTTATDL 722

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              L +         +L++ Y++G E     + D +     + + + +       +S  +
Sbjct: 723 EKLLPEMVF-----PILVDAYIEGHEFEVDCISDKTTTYVPVIMEQIEAAG---VHSGDS 774

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
           +  + P      +  E++++A    Q +  +G     F+     + V+ LEIN +   T 
Sbjct: 775 TMILPPVSALASLQDEIEQIAQTIGQHLDYQGAFNIQFVV--KDQTVYVLEINPRASRT- 831

Query: 271 VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
               P ++   G     LL W V+ A  ++
Sbjct: 832 ---LPIVSKVTGQP---LLEWAVQAAIGMK 855



 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 84/302 (27%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQ-----------------IDVD----RSVGLVLAHLKPDLAFN 56
           SG      L +AG +V                   I ++         ++   +P     
Sbjct: 26  SGTQACQTLREAGCEVMLMNSNPATIMTDPSTADHIYIEAMTLEKATAIIKRERPTHLLA 85

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +               +++  T    +      ++ + + +     +P+  +
Sbjct: 86  TVGGQTALNLALSLEEAGVLDQYQVKLLGTSLETIRDGEDRERFKQRMLELDQPLPISQT 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I               P V++P       G  + +  +            +   Q L+E 
Sbjct: 146 IETLEELEGFMEKAGVPLVVRPAFTLGGTGGGIAQTKEEARKLAANGLQASPISQCLVEA 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               T I V   +       ++  +        I   + + ++  
Sbjct: 206 SIAG-YKEVEYEVMRDAFDTTIIVCNMENIDPVGVHTGDSVVFAPIQSISDKMNQILRTA 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +     A+G  G     F   P  +  + +E+N  P ++  S     +   GY   +L  
Sbjct: 265 SREIVSALGVVGGCNIQFAIHPTEQTYYVIEVN--PRVSRSS--ALASKATGYPIAKLAT 320

Query: 291 WM 292
            +
Sbjct: 321 RL 322


>gi|94967497|ref|YP_589545.1| carbamoyl-phosphate synthase L chain, ATP-binding [Candidatus
           Koribacter versatilis Ellin345]
 gi|94549547|gb|ABF39471.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Candidatus Koribacter versatilis Ellin345]
          Length = 1862

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 71/264 (26%), Gaps = 19/264 (7%)

Query: 7   GISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           G + ER+       +    L  +            +   L   K + A+ V  G   E  
Sbjct: 61  GPAHERD-------SVTKQLRSSYLDYEL------LRNALTESKSEAAW-VGWGFVAEHA 106

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQH 122
               +   + I +            DK+ +K++     +PV       +           
Sbjct: 107 DFADLCRHMGIVFIGPSGEVMRRLGDKISAKKLAEKAKIPVAKWSGGPVETVAEAYAHAE 166

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P  IK   GG   GI  +     +      + +           +++        +
Sbjct: 167 RLGYPVFIKASAGGGGRGIRQVNSPAEMARAFEGARNEAFKAFGDPTVFLERRIDGARHV 226

Query: 183 GDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               + D      P         +             +  +    ++  A    Q     
Sbjct: 227 EVQIIADQFGTIWPLGTRDCTLQRRQQKVMEEAPCPVLTPEQDLALRDAAVRMGQTAAYV 286

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                +FL+   + ++ ++E+N +
Sbjct: 287 NAGTVEFLYLSKTNRMLFMEMNTR 310


>gi|85711851|ref|ZP_01042906.1| acetyl-CoA carboxylase [Idiomarina baltica OS145]
 gi|85694248|gb|EAQ32191.1| acetyl-CoA carboxylase [Idiomarina baltica OS145]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/283 (15%), Positives = 86/283 (30%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKP------------------------- 51
                 A ++ G K   +   VDR++  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTVDRNLKHVLLADEAICIGKAPAAESYLDIPRIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D A   +H   G   E+      +E     +         L  DK+ + + +   GVP  
Sbjct: 74  DAA--AIHPGYGFLAENADFAEQVEKSGFVFVGPTADVIRLMGDKVSAIKAMKKAGVPCV 131

Query: 109 PSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         D         I  P +IK   GG   G+ V++++  +   +  + +    
Sbjct: 132 PGSDGPLDDDDERNIKLAKRIGYPIIIKAAGGGGGRGMRVVRQESELLSAIRMTQNEARA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
                  Y++        +    L   +            ++          P   I  +
Sbjct: 192 AFGNPVVYMEKFLENPRHVEVQVLADGQGNAVHLGERDCSMQRRHQKVVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 252 MRKFIGERCAKACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|218526208|gb|ACK86511.1| carbamoyl-phosphate synthase [Myiodactylus osmyloides]
          Length = 718

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 127 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPKYVEQVIRSERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G       + E        + I +   + D+    + ++     V    +
Sbjct: 187 TFGGQTALNCGVQLEKAGVFEKYGCKILGTPIQSIIETEDRKMFAEKINEIGEKVAPSAA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 247 VYSVEEALEAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLRS--LATQALAHSNQLIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 364 AINVIRHFGVIGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|300718654|ref|YP_003743457.1| acetyl-CoA carboxylase, biotin carboxylase [Erwinia billingiae
           Eb661]
 gi|299064490|emb|CAX61610.1| Acetyl-CoA carboxylase, biotin carboxylase [Erwinia billingiae
           Eb661]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLTEDMDKNRAFGKQIGYPVIIKASGGGGGRGMRVVRHEKDLEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RFIGDRCSKACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|158451241|gb|ABW38981.1| putative CAD trifunctional protein [Oxytenis albilunulata]
          Length = 976

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALAAAIQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRHT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPSSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|153809398|ref|ZP_01962066.1| hypothetical protein BACCAC_03712 [Bacteroides caccae ATCC 43185]
 gi|149127984|gb|EDM19206.1| hypothetical protein BACCAC_03712 [Bacteroides caccae ATCC 43185]
          Length = 503

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   +    S    L   K          D      +G   E+       +   I +   
Sbjct: 47  EAYCVGPAASKESYLNIEKIIEVAKANHADAIHPG-YGFLSENAAFARRCQEEGIIFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSS 138
                    DK+ ++  +   GVPV P    N  +++    +      P ++K   GG  
Sbjct: 106 NPETMEAMGDKISARIKMIEAGVPVVPGTQENLKSVEEAVELCNKIGYPVMLKASMGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +I   + +      + S +         Y++        +    L      V    
Sbjct: 166 KGMRLIHSAEEVEEAYTTAKSESLSSFGDDTVYLEKFVEEPHHIEFQILGDKHGNVIHLC 225

Query: 199 FYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P   +  ++ K++   A  A +A+   G    +FL D      
Sbjct: 226 ERECSVQRRNQKIVEETPSVFVTPELRKDMGEKAVAAAKAVNYIGAGTIEFLVDKHRN-Y 284

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 285 YFLEMNTR 292


>gi|86450077|gb|ABC96227.1| carbamoylphosphate synthetase [Clinococera sp. CA2]
          Length = 1294

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTLDYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKIMGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVAEALQAAEILGYPVMARAAFSLGGLGSGFASNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVVGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|108755239|emb|CAK32559.1| Acetyl/propionyl-CoA carboxylase alpha subunit [uncultured
           organism]
          Length = 672

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 55/186 (29%), Gaps = 19/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ + + + S       + +           +++       
Sbjct: 148 AAQVGYPVMLKASAGGGGKGMRIARDEASAREGFRSARNEARASFGDERIFIEKYIEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      +         ++          P+     +    +   A    +A+ 
Sbjct: 208 HIEIQVLADAHGNMVHLGERECSIQRRHQKIIEEAPSPFLDPETRAAMGDQAIALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            R     +F+ D      ++LE+N       P         EM    G    +L+ WM+ 
Sbjct: 268 YRSAGTVEFIVDKNKN-FYFLEMNTRIQVEHP-------VTEM--VTGL---DLVAWMIR 314

Query: 295 DASCLR 300
            A+  +
Sbjct: 315 IAAGEK 320


>gi|261838417|gb|ACX98183.1| biotin carboxylase [Helicobacter pylori 51]
          Length = 455

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+P+ 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPMI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + I
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESI 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|302880074|ref|YP_003848638.1| acetyl-CoA carboxylase, biotin carboxylase [Gallionella
           capsiferriformans ES-2]
 gi|302582863|gb|ADL56874.1| acetyl-CoA carboxylase, biotin carboxylase [Gallionella
           capsiferriformans ES-2]
          Length = 451

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         L  DK+ +K  +   GVP  P +       
Sbjct: 82  YGFLSENADFSERVEKCGFVFIGPRAETIRLMGDKVSAKIAMKKAGVPCVPGVEGALPEN 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PAEIIKIARSIGYPVIIKASGGGGGRGMRVVHTEAALLGAVTMTRAEAQAAFNNPTVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
                   +    L                ++  +       PA +    +  ++     
Sbjct: 202 KYLENPRHIEFQVLADQHGNAVYLGERDCSMQRRNQKVMEEAPAPLLNPRLRNKIGERCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + F++E+N +
Sbjct: 262 EACRKIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|256820713|ref|YP_003141992.1| carbamoyl phosphate synthase large subunit [Capnocytophaga ochracea
           DSM 7271]
 gi|256582296|gb|ACU93431.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           ochracea DSM 7271]
          Length = 950

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTILINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ + + ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAIQITEDREKFRVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +                  
Sbjct: 209 KALLGWKEYELELLRDKNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQHMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 32/283 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A ++ G++   I         D D              +  ++ H KP+     L
Sbjct: 593 HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYFEPVFWEYIYDIIQHEKPEGVIVQL 651

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A       +    ++   P           +
Sbjct: 652 GGQTALKLAEKLDKYGIKIIGTSFQSLDLAEDRGSFSTLLKENNIPYPRFGVAETADEAL 711

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                +  P +++P       G+ ++   + +   ++        ++LL++ Y+DG IE 
Sbjct: 712 KLSDELDFPLLVRPSYVLGGQGMKIVINKEELEAHVVDLLRKIPNNKLLLDHYLDGAIEA 771

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           ++  + P  +   + ++++        A
Sbjct: 772 EADAICDGENVYIIGIMEHIEPCGIHSG---DSNATLPPFNLGEFVLQQIKDHTHKIALA 828

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +   G+    F        V+ +E N +   T     P ++  
Sbjct: 829 LNTVGLINVQFAV--KDDIVYIIEANPRASRT----VPFISKA 865


>gi|227536113|ref|ZP_03966162.1| acetyl-CoA carboxylase [Sphingobacterium spiritivorum ATCC 33300]
 gi|227244010|gb|EEI94025.1| acetyl-CoA carboxylase [Sphingobacterium spiritivorum ATCC 33300]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P +IK   GG   G+ +I KD+        +       + +    L +   +  
Sbjct: 148 ANEIGYPVIIKATAGGGGRGMRIIWKDEDFEAAWDSARQESAAAFGNDGIYLEKYVEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD    V  ++           +             I  ++ + +   A    
Sbjct: 208 HIEIQVVGDQYGTVCHLSERDCSIQ----RRHQKLLEEAPSPFITPELRQRMGEAAIKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D      +++E+N +
Sbjct: 264 KAVNYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|220936446|ref|YP_002515345.1| Phosphoribosylaminoimidazole carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
 gi|254788789|sp|B8GRA4|PURT_THISH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|219997756|gb|ACL74358.1| Phosphoribosylaminoimidazole carboxylase [Thioalkalivibrio sp.
           HL-EbGR7]
          Length = 399

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 81/283 (28%), Gaps = 24/283 (8%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                       ++  ++   KPDL    +
Sbjct: 24  GKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVIPMTDASALRELVLREKPDLIVPEI 83

Query: 59  HG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                 E   ++A      IP   +  L       +  + + +         +  +   T
Sbjct: 84  EAIATDELARIEAEGIARVIPTARATQLTMNREGIRRLAAEELGLQTSRYAFADSLESLT 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P +IKP+   S  G  ++     +      + S        +I + V   +
Sbjct: 144 AAIDGGIGYPCIIKPVMSSSGKGQSLVADASELTRAWDYARSAGRVDQGRVIVEAVVEFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   S                  +          P  +        + +A     
Sbjct: 204 FEITLLTVRSRGGDGNIRTDFCAPVGHRQVKGDYVESWQPQPMSETALDTAREMAAAVTG 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           A+G +G+   +F       +V++ E++ +P  T +        
Sbjct: 264 ALGGQGLFGVEFFV--RGDEVWFSEVSPRPHDTGLVTLATQWQ 304


>gi|167912595|ref|ZP_02499686.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 112]
          Length = 427

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 69/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P    
Sbjct: 49  AIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVTAKQTMIRTGVPCVPGSDG 108

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     +  P +IK   GG   G+ V+  + ++   +  +           
Sbjct: 109 ALPEDPKEIVKIARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAFGNP 168

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
           + Y++        +    L  +             ++          P   I   +   +
Sbjct: 169 QVYMEKFLENPRHIEIQVLSDSHKNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLIDRI 228

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + +G  G    +FL+   + + +++E+N +
Sbjct: 229 GDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 264


>gi|153212251|ref|ZP_01948039.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           1587]
 gi|254226442|ref|ZP_04920029.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae V51]
 gi|124116629|gb|EAY35449.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           1587]
 gi|125621064|gb|EAZ49411.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae V51]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|229525831|ref|ZP_04415236.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae bv.
           albensis VL426]
 gi|229339412|gb|EEO04429.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae bv.
           albensis VL426]
 gi|327483921|gb|AEA78328.1| Phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           LMA3894-4]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|15641241|ref|NP_230873.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121591556|ref|ZP_01678815.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           2740-80]
 gi|153819192|ref|ZP_01971859.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae NCTC
           8457]
 gi|153823030|ref|ZP_01975697.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae B33]
 gi|227081400|ref|YP_002809951.1| putative phosphoribosylglycinamide formyltransferase [Vibrio
           cholerae M66-2]
 gi|229505182|ref|ZP_04394692.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae BX
           330286]
 gi|229511147|ref|ZP_04400626.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae B33]
 gi|229518265|ref|ZP_04407709.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae RC9]
 gi|229608202|ref|YP_002878850.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MJ-1236]
 gi|254848354|ref|ZP_05237704.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MO10]
 gi|298498677|ref|ZP_07008484.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae MAK
           757]
 gi|254788790|sp|C3LLS4|PURT_VIBCM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|9655709|gb|AAF94387.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae O1
           biovar El Tor str. N16961]
 gi|121546583|gb|EAX56779.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           2740-80]
 gi|126510278|gb|EAZ72872.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae NCTC
           8457]
 gi|126519458|gb|EAZ76681.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae B33]
 gi|227009288|gb|ACP05500.1| putative phosphoribosylglycinamide formyltransferase [Vibrio
           cholerae M66-2]
 gi|229344980|gb|EEO09954.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae RC9]
 gi|229351112|gb|EEO16053.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae B33]
 gi|229357405|gb|EEO22322.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae BX
           330286]
 gi|229370857|gb|ACQ61280.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MJ-1236]
 gi|254844059|gb|EET22473.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MO10]
 gi|297543010|gb|EFH79060.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae MAK
           757]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|255745628|ref|ZP_05419576.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholera CIRS
           101]
 gi|262159096|ref|ZP_06030208.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           INDRE 91/1]
 gi|172044678|sp|Q9KSM8|PURT_VIBCH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|255736703|gb|EET92100.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholera CIRS
           101]
 gi|262029281|gb|EEY47933.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           INDRE 91/1]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|22124129|ref|NP_667552.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           KIM 10]
 gi|45443617|ref|NP_995156.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           biovar Microtus str. 91001]
 gi|51597863|ref|YP_072054.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis IP 32953]
 gi|108809662|ref|YP_653578.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Antiqua]
 gi|108813673|ref|YP_649440.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|145597581|ref|YP_001161657.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Pestoides F]
 gi|153997403|ref|ZP_02022503.1| biotin carboxylase [Yersinia pestis CA88-4125]
 gi|162421903|ref|YP_001605746.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           Angola]
 gi|165927539|ref|ZP_02223371.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165937470|ref|ZP_02226033.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|166011300|ref|ZP_02232198.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166214193|ref|ZP_02240228.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|167402018|ref|ZP_02307501.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167420593|ref|ZP_02312346.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167425426|ref|ZP_02317179.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470303|ref|ZP_02335007.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis FV-1]
 gi|170022709|ref|YP_001719214.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis YPIII]
 gi|186897057|ref|YP_001874169.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis PB1/+]
 gi|218930669|ref|YP_002348544.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia pestis
           CO92]
 gi|229836805|ref|ZP_04456970.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Pestoides A]
 gi|229839296|ref|ZP_04459455.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229899858|ref|ZP_04514999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229904169|ref|ZP_04519280.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|270488612|ref|ZP_06205686.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM D27]
 gi|294505251|ref|YP_003569313.1| acetyl-CoA carboxylase [Yersinia pestis Z176003]
 gi|21956883|gb|AAM83803.1|AE013621_3 acetyl CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM 10]
 gi|45438487|gb|AAS64033.1| biotin carboxylase [Yersinia pestis biovar Microtus str. 91001]
 gi|51591145|emb|CAH22810.1| biotin carboxylase [Yersinia pseudotuberculosis IP 32953]
 gi|108777321|gb|ABG19840.1| biotin carboxylase [Yersinia pestis Nepal516]
 gi|108781575|gb|ABG15633.1| biotin carboxylase [Yersinia pestis Antiqua]
 gi|115349280|emb|CAL22247.1| biotin carboxylase [Yersinia pestis CO92]
 gi|145209277|gb|ABP38684.1| biotin carboxylase [Yersinia pestis Pestoides F]
 gi|149289040|gb|EDM39120.1| biotin carboxylase [Yersinia pestis CA88-4125]
 gi|162354718|gb|ABX88666.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis Angola]
 gi|165914575|gb|EDR33189.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. IP275]
 gi|165920433|gb|EDR37710.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. F1991016]
 gi|165989684|gb|EDR41985.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. E1979001]
 gi|166204680|gb|EDR49160.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. B42003004]
 gi|166961399|gb|EDR57420.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Orientalis str. MG05-1020]
 gi|167048604|gb|EDR60012.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Antiqua str. UG05-0454]
 gi|167055440|gb|EDR65233.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169749243|gb|ACA66761.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis YPIII]
 gi|186700083|gb|ACC90712.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis PB1/+]
 gi|229678287|gb|EEO74392.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Nepal516]
 gi|229687350|gb|EEO79425.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229695662|gb|EEO85709.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229705748|gb|EEO91757.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           Pestoides A]
 gi|262363314|gb|ACY60035.1| acetyl-CoA carboxylase [Yersinia pestis D106004]
 gi|262367308|gb|ACY63865.1| acetyl-CoA carboxylase [Yersinia pestis D182038]
 gi|270337116|gb|EFA47893.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           KIM D27]
 gi|294355710|gb|ADE66051.1| acetyl-CoA carboxylase [Yersinia pestis Z176003]
 gi|320017175|gb|ADW00747.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL---------------AHLKPDLAFNVLH-- 59
                 A ++ G K   +    DR +  VL               ++L      +     
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|226425233|gb|ACO53616.1| biotin carboxylase 1 [Arachis hypogaea]
 gi|226425235|gb|ACO53617.1| biotin carboxylase 2 [Arachis hypogaea]
          Length = 540

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|261879233|ref|ZP_06005660.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bergensis
           DSM 17361]
 gi|270334061|gb|EFA44847.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella bergensis
           DSM 17361]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/238 (14%), Positives = 77/238 (32%), Gaps = 12/238 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V+   +PD+    +     E         +  +P   +          +  + + 
Sbjct: 54  DALTAVVERHQPDIIVPEIEAIRTERLFDFEKAGIQVVPSARAANYTMNRRAIRDLASRE 113

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +                   +   I  P V+KPL   S  G   +  ++ +     ++  
Sbjct: 114 LGLRT-AQYFYAKTFEEFKHAADQIGYPCVVKPLMSSSGHGQCYVHNEEELEEAFREAME 172

Query: 160 WNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              GD  +++IE+++D       +        T    P         +         +P 
Sbjct: 173 EGRGDVKEVIIEEFIDFDSEFTLLTITQQNGTTLFCPPIGHV-----QKGGDYRESWMPF 227

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GMTPVS 272
            IP +  K  + +A    +A+   G+   +F       +V + E++ +P   GM  +S
Sbjct: 228 HIPDEALKTAEHMADEVTKALTGAGLWGVEFFLTKQ-GEVIFSELSPRPHDTGMVTLS 284


>gi|190571025|ref|YP_001975383.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
 gi|190357297|emb|CAQ54725.1| propionyl-CoA carboxylase, alpha subunit [Wolbachia endosymbiont of
           Culex quinquefasciatus Pel]
          Length = 656

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/272 (11%), Positives = 80/272 (29%), Gaps = 25/272 (9%)

Query: 14  VSLSS------GKACA-SALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN-----VLH-- 59
           +S  S        +      +++      I    +    L   K            +H  
Sbjct: 30  ISCVSVYSDADANSVHVKQADESRH----IGPSPAYLSYLNIEKICEVAVETGAEAVHPG 85

Query: 60  -GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G   E+      LE   I +         ++ +K+ +K+     GV V P  +      
Sbjct: 86  YGFLAENPDFPRALEKHNIDFIGPSAETIEVTANKITAKEEARKAGVNVVPGYMGKIEDA 145

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ ++   + I L    +++           +++ 
Sbjct: 146 AHAAIVAEEIGFPVMLKAASGGGGKGMRIVYSKKEIELAFTSATNEAEKSFKDGSIFIEK 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    +      +         ++ ++       P+    +  ++        
Sbjct: 206 YIELPRHIEIQIIADKYGNIVCLGERECSVQRNNQKIIEETPSPFISEEVRQKMYAQCVS 265

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +        +F+ D  ++  ++LE+N +
Sbjct: 266 LAKQVDYFSAGTVEFVVD-KNQNFYFLEVNTR 296


>gi|153011900|ref|YP_001373113.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
 gi|151563788|gb|ABS17284.1| pyruvate carboxylase [Ochrobactrum anthropi ATCC 49188]
          Length = 1157

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/153 (15%), Positives = 52/153 (33%), Gaps = 1/153 (0%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P ++K   GG   G+  I+K + +  ++ ++           E Y++
Sbjct: 149 MAEVERMAEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLE 208

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAF 232
            +      +    L  T   V         ++  +       PA    +   +E+   + 
Sbjct: 209 KLVERARHVESQILGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELASYSL 268

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A    G    ++L D  + K +++E+N +
Sbjct: 269 KIAGATNYIGAGTVEYLMDADTGKFYFIEVNPR 301


>gi|90415069|ref|ZP_01223027.1| 5'-phosphoribosylglycinamide transformylase [Photobacterium
           profundum 3TCK]
 gi|90323804|gb|EAS40417.1| 5'-phosphoribosylglycinamide transformylase [Photobacterium
           profundum 3TCK]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVVAVDRYDNAPAMQVAHRSHVIDMLDGDALRKLIELEQPHYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      +  +P  ++  L       +  + + +                 +
Sbjct: 82  EAIATDTLVSLEAEGVNIVPTANATKLTMNREGIRRLAAEDLQIPT-SPFEFADQYNDFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK    I        +   G        V+G    
Sbjct: 141 AAVEHVGTPCVVKPIMSSSGKGQSVIKTPADIEA--SWQYAQEGGRAGTGRVVVEGFIKF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++  +  K  Q +A     A+
Sbjct: 199 DYEITLLTIRAVDGVHFCAPIGHRQEDG--DYRESWQPQQMSDEALKAAQDVAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        +V + E++ +P   GM       +S F        G   ++++
Sbjct: 257 GGYGLFGVELFV--RGNEVLFNEVSPRPHDTGMVTLISQDLSEFALHVRAFLGLPIQQII 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|293374585|ref|ZP_06620902.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sanguinis PC909]
 gi|292646787|gb|EFF64780.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sanguinis PC909]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 21/184 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI  +         +             Y++       
Sbjct: 148 AKEIGYPVLVKASAGGGGRGMRVINSEDEFEDLFQTAKLEAKMSFGDDSMYMEKFIENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++  +       P+ +  ++ ++    +A LA + +G
Sbjct: 208 HIEFQILADQFGNVVHLYDRDCSVQRRNQKVIEEAPSPVLDELTRQKMGEIAVLAAKTVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +FL D      +++E+N +              +       G    +L+   +
Sbjct: 268 YENAGTIEFLLDKHQN-FYFIEMNTR----------IQVEHPITEMITGI---DLIKEQI 313

Query: 294 EDAS 297
           + AS
Sbjct: 314 KIAS 317


>gi|300768810|ref|ZP_07078705.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
 gi|300493637|gb|EFK28810.1| acetyl-CoA carboxylase subunit A [Lactobacillus plantarum subsp.
           plantarum ATCC 14917]
          Length = 440

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 20/263 (7%)

Query: 21  ACASALED-AGF-----KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDG 66
           A  S  +  AG+     +V  I    + G  L      +A    H        G   E+ 
Sbjct: 30  AVCSTADRHAGYTQLADEVVCIGPAAASGSYLNAEAILMAAINTHADAIHPGYGFLAENA 89

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQH 122
              A+     I +         L  DK R+K       VPV                +  
Sbjct: 90  DFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSLQGLAWPDIKHAAA 149

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V+K   GG   GI V+     +   L  +        L    Y++    T   +
Sbjct: 150 KIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRAARQEAAASFLNDAMYLEQFLTTARHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L          D       +          + +     + +  L+         + 
Sbjct: 210 EVQVLGTGTKLFILGDRDCSLQLHKQKVLEESPASILTETQRRTLYDLSRQLLAGTHYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++LF     + +++E+N +
Sbjct: 270 LGTIEYLF--ADGQFYFMEMNTR 290


>gi|226286590|gb|EEH42103.1| biotin carboxylase [Paracoccidioides brasiliensis Pb18]
          Length = 673

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGADELQSAVDRAAGESPSTKVFVEKAAVGSFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAI 238
            V     +      V         ++          P       +  +V   A    + I
Sbjct: 212 EVQ---VIGDGTGEVRHLWERDCSVQRRFQKIVEYSPAMMKDRKLVSKVIESALKIAKMI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + F+LE+N +
Sbjct: 269 KYLSLGTFEFLVSETLSEFFFLEVNPR 295


>gi|254555701|ref|YP_003062118.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum JDM1]
 gi|7416012|dbj|BAA93643.1| biotin carboxylase [Lactobacillus plantarum]
 gi|254044628|gb|ACT61421.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           plantarum JDM1]
          Length = 440

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/263 (15%), Positives = 75/263 (28%), Gaps = 20/263 (7%)

Query: 21  ACASALED-AGF-----KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDG 66
           A  S  +  AG+     +V  I    + G  L      +A    H        G   E+ 
Sbjct: 30  AVCSTADRHAGYTQLADEVVCIGPAAASGSYLNAEAILMAAINTHADAIHPGYGFLAENA 89

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL----VNRFTMDSQH 122
              A+     I +         L  DK R+K       VPV                +  
Sbjct: 90  DFAAMCAECGIAWIGPQTEQIKLMGDKARAKDFARQQAVPVLAGQSLQGLAWPDIKHAAA 149

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P V+K   GG   GI V+     +   L  +        L    Y++    T   +
Sbjct: 150 KIGFPLVLKASYGGGGKGIRVLTDVHELHQQLRAARQEAAASFLNDAMYLEQFLTTARHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L          D       +          + +     + +  L+         + 
Sbjct: 210 EVQVLGTGTKLFILGDRDCSLQLHKQKVLEESPASILTETQRRTLYDLSRQLLAGTHYQS 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   ++LF     + +++E+N +
Sbjct: 270 LGTIEYLF--ADGQFYFMEMNTR 290


>gi|332664473|ref|YP_004447261.1| acetyl-CoA carboxylase, biotin carboxylase [Haliscomenobacter
           hydrossis DSM 1100]
 gi|332333287|gb|AEE50388.1| acetyl-CoA carboxylase, biotin carboxylase [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 446

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/151 (12%), Positives = 54/151 (35%), Gaps = 10/151 (6%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               +  P ++K   GG   G+ ++ K++        +       +++    + +   + 
Sbjct: 147 QAKEVGYPIILKATAGGGGKGMRIVWKEEDFESAWNTARMEAKASFSNDGIYMEKYIEEP 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   ++GD    V  ++           +             +  ++ +++   A  A
Sbjct: 207 RHIEFQIVGDQYGKVIHLSERDCSIQ----RRHQKLVEECPSPFMTDELREKMGNAAVKA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +AI   G+   +FL D      +++E+N +
Sbjct: 263 GEAIKYEGVGTIEFLVDKYRN-FYFMEMNTR 292


>gi|320590576|gb|EFX03019.1| bifunctional pyrimidine biosynthesis protein [Grosmannia clavigera
           kw1407]
          Length = 2325

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 477 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVFFLPVNAEFVRKVIVYERPDAIYV 536

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E  E+  T  G     +   + R     S   +        S  
Sbjct: 537 TFGGQTALQVGIQLKDEFAELGVTVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAN 596

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      ++ +    L   ++    Q+LIE+ +
Sbjct: 597 SIEEAMQVVQSIGFPVIVRAAYALGGLGSGFANDEEELLA--LCGKAFAASPQVLIERSM 654

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 655 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 713

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 714 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 763


>gi|193213520|ref|YP_001999473.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobaculum parvum
           NCIB 8327]
 gi|193086997|gb|ACF12273.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobaculum parvum
           NCIB 8327]
          Length = 447

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ V+ ++  +  +L  + S           Y++       
Sbjct: 148 AKRIGYPVIIKPTAGGGGKGMRVVHEESQLEKNLKTAQSEAGMAFGNSGVYIEKFLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P+ +  + +  ++   A  A +AI 
Sbjct: 208 HIEIQILADQHGNVLHLGERDCTVQRRHQKLIEETPSPVVDEALRTKMGEAAVAAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDKHKN-FYFMEMNTR 292


>gi|190345912|gb|EDK37882.2| hypothetical protein PGUG_01980 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 2203

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 457 SGSQAIKALKEEGIYTVLINPNIATIQTSRGLADKVYFLPVTPEFVRKVIQHERPDGIYC 516

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
              G    +  ++   E   +     G     +   + R     +   +    +    + 
Sbjct: 517 TFGGQTALNVGIKLKEEFEGLGVKVLGTPIDTVITTEDRELFAQAMEEIGEKCARSEAVE 576

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 577 SVSEAIRAANEIGYPLIVRAAYALGGLGSGFADNEEELVA--LCNKAFATSPQVLVERSM 634

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 635 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 693

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S+    +E+N +  ++  S     +   GY   
Sbjct: 694 NVIRHLGVVGECNIQYALNPFSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 743


>gi|146420710|ref|XP_001486309.1| hypothetical protein PGUG_01980 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 2203

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/294 (12%), Positives = 90/294 (30%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ H +PD  + 
Sbjct: 457 SGSQAIKALKEEGIYTVLINPNIATIQTSRGLADKVYFLPVTPEFVRKVIQHERPDGIYC 516

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----IL 112
              G    +  ++   E   +     G     +   + R     +   +    +    + 
Sbjct: 517 TFGGQTALNVGIKLKEEFEGLGVKVLGTPIDTVITTEDRELFAQAMEEIGEKCARSEAVE 576

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                + + + I  P +++       LG      ++ +    L + ++    Q+L+E+ +
Sbjct: 577 SVSEAIRAANEIGYPLIVRAAYALGGLGSGFADNEEELVA--LCNKAFATSPQVLVERSM 634

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 635 KGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 693

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S+    +E+N +  ++  S     +   GY   
Sbjct: 694 NVIRHLGVVGECNIQYALNPFSKDYCIIEVNAR--LSRSS--ALASKATGYPLA 743


>gi|118473801|ref|YP_889520.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           smegmatis str. MC2 155]
 gi|171472985|sp|A0R2Y2|PURT_MYCS2 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|118175088|gb|ABK75984.1| phosphoribosylglycinamide formyltransferase 2 [Mycobacterium
           smegmatis str. MC2 155]
          Length = 400

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/276 (12%), Positives = 75/276 (27%), Gaps = 29/276 (10%)

Query: 19  GKACASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNV 57
           G+    AL+  G +   +                     D D  +  ++   +PDL    
Sbjct: 24  GREVLIALQRLGVETIAVDRYENAPGHQVAHHARTIAMSDPD-QLRALIEAERPDLVVPE 82

Query: 58  LHGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +               +   IP   +  L       +  + + +     P      +   
Sbjct: 83  IEAIATPVLEALEAEGVTTVIPTARATRLTMDREGIRRLAAETLGVPTSPYRFCDSLAEL 142

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGI 175
                  I  P V+KP+   S  G   I     +      + +        +I +     
Sbjct: 143 QAAIDDEIGYPCVVKPVMSSSGKGQSKINGPDEVAAAWEYAMAGGRVSHTRIIVEGFVDF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +    ++   +         +        +          P  +P    +  Q +A    
Sbjct: 203 DYEITLLTVRARGADGEIATQFCEPIGHRQVGGDYVESWQPHPMPATALERAQEIAGAVT 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             +G +GI   +        +V++ E++ +P   GM
Sbjct: 263 GNLGGQGIFGVELFV--KGDQVWFSEVSPRPHDTGM 296


>gi|226425251|gb|ACO53625.1| acetyl-CoA carboxylase 2 [Arachis hypogaea]
          Length = 2260

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  V     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPDSCLVTIPDEIYREACVYTTEEAIASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                K        V P        K +++ A    +++   G +  ++LF   + + ++
Sbjct: 297 QRRHQKIIEEGPITVAPP----QTVKLLEQAAGRLAKSVNYVGAATVEYLFSMEAGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|148910074|gb|ABR18119.1| unknown [Picea sitchensis]
          Length = 388

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 27/186 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P +IK   GG   G+ +  +       L Q+ S     + +    L +   +  
Sbjct: 67  ANQIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQAKSEAGAAFGNDGVYLEKYIKNPR 126

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D   +                + +           +   +   +   A  A 
Sbjct: 127 HIEFQILADKHGNCIHFGERDCSIQ----RRNQKLLEEAPSPALTPKLRNAMGDAAVAAA 182

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
            +IG  G+   +FL D  S   +++E+N       P +T +            S  +L+ 
Sbjct: 183 LSIGYVGVGTVEFLLDE-SGDFYFMEMNTRIQVEHP-ITEM-----------ISSTDLIE 229

Query: 291 WMVEDA 296
             +  A
Sbjct: 230 EQIRVA 235


>gi|167622646|ref|YP_001672940.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
            halifaxensis HAW-EB4]
 gi|167352668|gb|ABZ75281.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
            halifaxensis HAW-EB4]
          Length = 1517

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +  VPV P            ++    I  P ++K ++GG   GI V+++   +     +
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ + V     L   A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKQRVMEYTRLLGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|157960434|ref|YP_001500468.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella pealeana
            ATCC 700345]
 gi|157845434|gb|ABV85933.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella pealeana
            ATCC 700345]
          Length = 1517

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             +  VPV P            ++    I  P ++K ++GG   GI V+++   +     +
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDQFGNTKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ + V     L   A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKQRVMEYTRLLGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|320166625|gb|EFW43524.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Capsaspora owczarzaki ATCC 30864]
          Length = 711

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK + GG   G+ +++K +     L  S       +   + L+ +  ++  
Sbjct: 186 ADKIGYPVLIKAIMGGGGKGMRIVEKPEDFEAMLESSKRESLKSFGDDNVLVEKYVLNPR 245

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            +             +  ++ + +   A  A 
Sbjct: 246 HVEVQVFADKLGNGVYLFERDCSVQ----RRHQKIIEEAPAPGLSDEVRRNLGETAVRAA 301

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           QA+   G    +F+ DP  ++ +++E+N +
Sbjct: 302 QAVNYVGAGTVEFIMDPK-QQFYFMEMNTR 330


>gi|300114561|ref|YP_003761136.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus watsonii
           C-113]
 gi|299540498|gb|ADJ28815.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosococcus watsonii
           C-113]
          Length = 446

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 87/281 (30%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLVL--------------------------AHLK 50
                 A  + G K   I  +VDR +  VL                          A + 
Sbjct: 14  ALRILRACWELGLKTVAIHSEVDRELKHVLLADETVCIGPAASSQSYLNIPAVISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ + + + + GVP  P 
Sbjct: 74  DAVAIHPGYGFLAENADFAERVEQSGFVFIGPRPETIRLIGDKVSAIKAMKASGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +   +     I  P +IK   GG   G+ V+  +  +P  +  + S      
Sbjct: 134 SEGPLGEDDEENIAIAKEIGYPVMIKASGGGGGRGMRVVHSEAHLPTAISLTRSEASAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L  T             ++          PA  I  +  
Sbjct: 194 GNDMVYMEKYLENPRHVEFQVLADTHGQAIYLGERDCSMQRRHQKVVEEAPAPGITDEQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +  +   A + +  RG    +FL+     + +++E+N +
Sbjct: 254 QRIGEICTEACRKMSYRGAGTFEFLY--QDGEFYFIEMNTR 292


>gi|218526242|gb|ACK86528.1| carbamoyl-phosphate synthase [Platystoechotes lineatus]
          Length = 721

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 191 TFGGQTALNCGVELEKAGVFEKYGCKILGTPIQSIIDTEDRKMFAEKINEIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  +I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 251 VYSVEEALNAAEIIGYPVMARAAFSLGGLGSGFAHNQEQLKS--LAIQALAHSNQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 368 AINVIRHFGVIGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 419


>gi|225572496|ref|ZP_03781360.1| hypothetical protein RUMHYD_00793 [Blautia hydrogenotrophica DSM
           10507]
 gi|225040036|gb|EEG50282.1| hypothetical protein RUMHYD_00793 [Blautia hydrogenotrophica DSM
           10507]
          Length = 587

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/286 (11%), Positives = 83/286 (29%), Gaps = 45/286 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------------VGLVLAHLKP 51
                 A ++ G +   I  +                             +  ++   K 
Sbjct: 16  ALRVIRACKELGIRSVAIYSEEDKNALFRTKADESYQIGKGKSPLEAYLGISQIIELAKA 75

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + +H   G   E+       E   I +        +   DK++SK V    GV   
Sbjct: 76  KSV-DAIHPGYGFLSENRDFAKQCEEAGITFIGPTADMMSRVGDKIQSKLVAHKAGVGTV 134

Query: 109 PSILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-- 162
           P +       +  +        P ++K   GG   G+ ++++++ +  +   + S     
Sbjct: 135 PGVDEAIKSEKDAIAFARSCGYPVMLKASAGGGGRGMRIVREEKDLLAEFNNAQSEARKA 194

Query: 163 ---GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               D  + +   +   +   V+GD   ++  +            +             +
Sbjct: 195 FGIDDIFIEKYIENPKHIEVQVLGDEYGNLVHLYERDCSVQ----RRHQKVIEFTPSQIL 250

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                + +   A    + +  +     +FL D      +++E+N +
Sbjct: 251 TQAQREAICEDALKIAREVNYKSAGTVEFLLD-NDGNHYFIEMNTR 295


>gi|158451243|gb|ABW38982.1| putative CAD trifunctional protein [Oxytenis beprea]
          Length = 686

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 86  SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 145

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 146 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 205

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 206 VTSVDEALAAAIQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 263

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 264 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRHT 322

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 323 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 378

Query: 291 WM 292
            +
Sbjct: 379 KL 380


>gi|160933860|ref|ZP_02081248.1| hypothetical protein CLOLEP_02722 [Clostridium leptum DSM 753]
 gi|156867737|gb|EDO61109.1| hypothetical protein CLOLEP_02722 [Clostridium leptum DSM 753]
          Length = 426

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/253 (17%), Positives = 86/253 (33%), Gaps = 25/253 (9%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+    ++ E   I +        +   DK  +++ + + GVPV P   +
Sbjct: 54  AIHPGYGLLSENAKFVSLCEKCNIAFIGPTSQMISQMGDKDMARKTMRNAGVPVTPGCDI 113

Query: 114 NRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                +       I  P +IK   GG   GI ++    +       +SS           
Sbjct: 114 ITDIKEAAAVAEKIGYPVLIKAKAGGGGRGIRLVSSPDAFENAFYSASSEAQSAFGDGAC 173

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           Y++        +    L      V         ++  +       P+  I  D  + + +
Sbjct: 174 YMEKYLNPVKHIEMQILCDQYGNVVCLGERECSVQRKNQKLIEESPSPAITQDTRQRMIQ 233

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
           +A  A + +G  G    +FL+D  S   +++E+N       P         EM    G  
Sbjct: 234 VAAKAAKTVGYVGAGTIEFLYD-QSGNFYFMEMNTRLQVEHP-------VTEM--VTGI- 282

Query: 285 FRELLLWMVEDAS 297
             +L+ W +  A+
Sbjct: 283 --DLVQWQIRVAA 293


>gi|152984783|ref|YP_001347635.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa PA7]
 gi|150959941|gb|ABR81966.1| probable biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa PA7]
          Length = 661

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++   L   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPDQLLDQLRTARSEALGAFGSAELILEKAVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-AEDGRFYFLEMNTR 294


>gi|83648393|ref|YP_436828.1| acetyl/propionyl-CoA carboxylase subunit alpha [Hahella chejuensis
           KCTC 2396]
 gi|83636436|gb|ABC32403.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Hahella chejuensis
           KCTC 2396]
          Length = 651

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ + + +  +   +  + S         E  ++   L   
Sbjct: 148 AGRIGFPVMIKASAGGGGRGMRLAQGEAELAEQIKTARSEALNAFGSDELILEKALLKPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +       +  +          ++          P+     ++ + +   A  A Q+ G
Sbjct: 208 HIEIQVFADSHGSALYLGERDCSVQRRHQKVVEEAPSPFVDAELRERMGAAAVKAAQSCG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D   ++ ++LE+N +
Sbjct: 268 YVGAGTVEFLVD-QDKQFYFLEMNTR 292


>gi|169783542|ref|XP_001826233.1| carbamoyl-phosphate synthase (glutamine-hydrolysing) large subunit
           [Aspergillus oryzae RIB40]
 gi|238493361|ref|XP_002377917.1| carbamoyl-phosphate synthase, large subunit [Aspergillus flavus
           NRRL3357]
 gi|83774977|dbj|BAE65100.1| unnamed protein product [Aspergillus oryzae]
 gi|220696411|gb|EED52753.1| carbamoyl-phosphate synthase, large subunit [Aspergillus flavus
           NRRL3357]
          Length = 1175

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 121 SGSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPEYVTYVIERERPDAIFL 180

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 181 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIKTLETSEDRDLFAKALNEINIPIAESIA 240

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG       + +     +S +     Q+L+E+
Sbjct: 241 VNTVDEALKAAEEVGYPIIVRSAYALGGLGSGFANNPEELRNLASRSLTLAP--QILVEK 298

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   I V   + +     ++  +        +  + Y  ++  
Sbjct: 299 SLRGW-KEVEYEVVRDADNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 357

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 358 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 409


>gi|322391454|ref|ZP_08064923.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus peroris
           ATCC 700780]
 gi|321145537|gb|EFX40929.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus peroris
           ATCC 700780]
          Length = 455

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSARVMDVMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAIAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVSAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQMGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++        +FL D  + K +++E+N +
Sbjct: 257 S----AAVRAAESVHYENAGTIEFLLDEATGKFYFMEMNTR 293


>gi|311695433|gb|ADP98306.1| methylcrotonoyl-coenzyme A carboxylase 1 (alpha) [marine bacterium
           HP15]
          Length = 656

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++ +  +  ++ +       ++   + +L +  ++  
Sbjct: 148 AKDIGYPLMIKASAGGGGRGMRLVESESELADNIKRARSESKQAFGDDELILEKAVIEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            +             +  ++ + +   A  A 
Sbjct: 208 HVEIQVFADRHGNAVYLGERDCSVQ----RRHQKVVEEAPSPFVTPELRQAMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    G    +FL D      ++LE+N +
Sbjct: 264 LACNYEGAGTVEFLVDKHRN-FYFLEMNTR 292


>gi|158451341|gb|ABW39031.1| putative CAD trifunctional protein [Vegetia ducalis]
          Length = 977

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 377 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 436

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 437 TFGGQTALNCGVELQKSRIFEKYNVXVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 496

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 497 VTSVEEALVAAVQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 554

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 555 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 613

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 614 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 669

Query: 291 WM 292
            +
Sbjct: 670 KL 671


>gi|52842056|ref|YP_095855.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
 gi|52629167|gb|AAU27908.1| acyl CoA carboxylase subunit alpha subunit [Legionella pneumophila
           subsp. pneumophila str. Philadelphia 1]
          Length = 677

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +  ++     L  +   +          ++ + L   
Sbjct: 171 AKKIGFPVLIKAANGGGGKGMRAVHDEKEFHDALAGAKRESMASFADDTMIIERLVLNPR 230

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP-LDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          PA      + + +   A    ++I 
Sbjct: 231 HVEVQIMADNHGNVVNLFERDCSIQRRHQKIIEEAPAPNLLPVLRQRLAEAACEVARSIN 290

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D    K +++E+N +
Sbjct: 291 YRGAGTVEFLVDGED-KFYFMEMNTR 315


>gi|294085341|ref|YP_003552101.1| acetyl CoA carboxylase biotin carboxylase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
 gi|292664916|gb|ADE40017.1| acetyl CoA carboxylase, biotin carboxylase subunit [Candidatus
           Puniceispirillum marinum IMCC1322]
          Length = 471

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 31/184 (16%), Positives = 61/184 (33%), Gaps = 19/184 (10%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   GI + +  +       +++S           YV+ +    
Sbjct: 148 MAEAIGFPVMIKAAAGGGGRGIRIAENAEDFVKIAAEATSEAKAAFGDGRLYVEKLISNA 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   +  V   +      +             +  D+   +   A    QA+G
Sbjct: 208 RHVEVQILGDGQRFVHCFERECSLQRRRQKLWEEAPCLALSDDMRDRLCNSAVKLAQAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +G    +FL+D +SR  +++E+N +              +       G    +L+  M+
Sbjct: 268 YKGAGTIEFLYDDVSRTYYFIEMNTR----------IQVEHPVTEAITGI---DLVAEMI 314

Query: 294 EDAS 297
             AS
Sbjct: 315 RIAS 318


>gi|283782230|ref|YP_003372985.1| acetyl-CoA carboxylase, biotin carboxylase [Pirellula staleyi DSM
           6068]
 gi|283440683|gb|ADB19125.1| acetyl-CoA carboxylase, biotin carboxylase [Pirellula staleyi DSM
           6068]
          Length = 451

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 77/278 (27%), Gaps = 34/278 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-VGLVL----------------AHLKPDLAFNVLH-- 59
                 A ++ G +   +          L                ++LK D   +     
Sbjct: 14  ALRIIRACKELGIETVCVYSTADRGAQYLDLADEAYCIGPPKGMQSYLKIDQIISAAEVG 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+     +    +I +      A     DK R++ +  +  VPV P 
Sbjct: 74  NVEAIHPGYGFLAENSHFNEVCRSCKIDFIGPTPEAMDSLGDKNRARDMARAAKVPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               I      + +   I  P +IK   GG   G+ V   + ++   L Q+ +       
Sbjct: 134 SAGLIEDEEEAVRTAREIGFPVLIKATAGGGGKGMRVAGNELALKTALQQAKAEAQAAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    +      V          +          PA       +E
Sbjct: 194 NGGVYLEKFIERPRHVEVQMIADHHGNVVHLYERECSTQRRHQKLIEESPAPRLPAERRE 253

Query: 227 VQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               A     +  G       +F+ D  +   +++E+N
Sbjct: 254 AMCQAAVRLLKQAGYTNAGTVEFIVDQENN-FYFIEVN 290


>gi|264680220|ref|YP_003280130.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           CNB-2]
 gi|299533093|ref|ZP_07046478.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           S44]
 gi|262210736|gb|ACY34834.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           CNB-2]
 gi|298718870|gb|EFI59842.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           S44]
          Length = 452

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + +     + +    + +   +  
Sbjct: 149 AKTIGYPVIIKASGGGGGRGMRVVHTEAALINAVQMTKAEAGAAFGNPAVYMEKYLQNPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            K         +P ++   I +        A 
Sbjct: 209 HVEIQVLADTHKNAVYLGERDCSMQRRHQKVIEEAPAPGIPRRLIEKIGE----RCAAAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG RG    +FL+   + + +++E+N +
Sbjct: 265 KKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|300772083|ref|ZP_07081953.1| acetyl-CoA carboxylase subunit A [Sphingobacterium spiritivorum
           ATCC 33861]
 gi|300760386|gb|EFK57212.1| acetyl-CoA carboxylase subunit A [Sphingobacterium spiritivorum
           ATCC 33861]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P +IK   GG   G+ +I KD+        +       + +    L +   +  
Sbjct: 148 ANEIGYPVIIKATAGGGGRGMRIIWKDEDFEAAWDSARQESAAAFGNDGIYLEKYVEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD    V  ++           +             I  ++ + +   A    
Sbjct: 208 HIEIQVVGDQYGTVCHLSERDCSIQ----RRHQKLLEEAPSPFITPELRQTMGEAAIKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D      +++E+N +
Sbjct: 264 KAVNYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|225445664|ref|XP_002266489.1| PREDICTED: hypothetical protein [Vitis vinifera]
          Length = 525

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 147 YGFLAENATFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSEGLLKST 206

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 207 EEGIKLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 266

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 267 YIQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTSELRKAMGD 322

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 323 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 357


>gi|168001228|ref|XP_001753317.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162695603|gb|EDQ81946.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 510

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   + +      +  +  DK  +++ + S GVP  P     I   
Sbjct: 120 YGFLAENATFVDMCKDHGLNFIGPNSDSIRVMGDKATARETMKSAGVPTVPGSEGLIQTT 179

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   H I  P +IK   GG   G+ +  +       L Q+ S     + +    L  
Sbjct: 180 EEAVRLAHEIGFPVMIKATAGGGGRGMRLANEPGEFVKLLQQARSEAGAAFGNDGVYLER 239

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 240 YIQNPRHIEFQVLADKHGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 295

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 296 AAVAATASIGYIGVGTVEFLLDE-GGNFYFMEMNTR 330


>gi|331015340|gb|EGH95396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 336

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ ++Q +   +  +           E Y++   +   
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNPELYIEKFLVQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          PA      +   V      A + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGVDAALMTRVGERCAQACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|297736021|emb|CBI24059.3| unnamed protein product [Vitis vinifera]
          Length = 587

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 209 YGFLAENATFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSEGLLKST 268

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 269 EEGIKLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 328

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 329 YIQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTSELRKAMGD 384

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 385 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 419


>gi|260551649|ref|ZP_05825723.1| biotin carboxylase [Acinetobacter sp. RUH2624]
 gi|260405392|gb|EEW98886.1| biotin carboxylase [Acinetobacter sp. RUH2624]
          Length = 456

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 86/285 (30%), Gaps = 46/285 (16%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKP-------------DLAFN--------- 56
                 A +  G K   I  D      L HL+              D   N         
Sbjct: 14  ALRITRACKTLGIKTVGIYSDAD--KDLMHLRFVDEAVCIGPGASSDSYLNIPAIITAAE 71

Query: 57  -----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGV 105
                 +H   G   E+     I+E     +         L  +K   + + +      V
Sbjct: 72  ITGADAIHPGYGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTV 131

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
           P C   +     +     I  P ++K   GG   G+ ++++  ++          +  W 
Sbjct: 132 PGCDHAVTIHNALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWF 191

Query: 162 HGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             D + +E++      +   V+GD +     +            K         LP +  
Sbjct: 192 GDDTVYMERFLQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQAR 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI +        A Q +  RG    +FLF     + F++E+N +
Sbjct: 252 ADILQ----ACVNACQLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|261821764|ref|YP_003259870.1| urea carboxylase [Pectobacterium wasabiae WPP163]
 gi|261605777|gb|ACX88263.1| urea carboxylase [Pectobacterium wasabiae WPP163]
          Length = 1204

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+       ++                    +++       
Sbjct: 147 AEEIGYPVMLKSTAGGGGIGLTRCADTAALHAAWESVRRLGEQFFSDSGVFLERCIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D     +   A    + + 
Sbjct: 207 HVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +F++D      F+LE+N +
Sbjct: 267 YRSAGTVEFIYDAERDAFFFLEVNTR 292


>gi|149190022|ref|ZP_01868300.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio shilonii AK1]
 gi|148836188|gb|EDL53147.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio shilonii AK1]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 76/268 (28%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  ++   +PD     +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSYVLDMLDGEALEAIINQEQPDYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATDKLVELESKGLNVVPTANATKLTMNREGIRRLAAEELGLNT-SPYQFADSYEDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK +  I      + +   G        V+G    
Sbjct: 141 AAVENVGVPCVVKPVMSSSGKGQSVIKSESDIEKA--WTYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPVGHRQEDGDYRESWQ--PQAMSANAIKAAEYTAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  GI   +        KV + E++ +P
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP 282


>gi|29655015|ref|NP_820707.1| biotin carboxylase [Coxiella burnetii RSA 493]
 gi|29542284|gb|AAO91221.1| biotin carboxylase [Coxiella burnetii RSA 493]
          Length = 448

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/213 (14%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+      +E     +      A  L  +K+ + + +   G+P  P         
Sbjct: 82  YGFLAENPNFCEQVEKSGFVFIGPSHEAIHLMGNKVSAIKAMKEAGLPCIPGSDGALGKD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+ ++  +   +  + +         + Y++
Sbjct: 142 GDANLLIAEQIGYPILIKAAGGGGGRGMRVVHREAELLNAIAMTRTEAAAAFGTDKVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L   +            ++          PA  I       +     
Sbjct: 202 KFLENPRHIEIQVLGDGQGHAIHLGERDCSMQRRHQKVIEEAPAPGITPKQRATIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A+  RG    +FL+   + + +++E+N +
Sbjct: 262 QACIAMNYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|329962614|ref|ZP_08300562.1| carbamoyl-phosphate synthase, large subunit [Bacteroides fluxus YIT
           12057]
 gi|328529645|gb|EGF56543.1| carbamoyl-phosphate synthase, large subunit [Bacteroides fluxus YIT
           12057]
          Length = 1073

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     ++ +                       V  ++   +PD    
Sbjct: 27  SGSQALKALREEGISSVLVNPNIATIQTSEGIADKVYFLPVTPYFVEEIIKKEQPDGILL 86

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +  +  IL+   +    + + A   + D+     K        P   +
Sbjct: 87  AFGGQTALNCGTELYLNGILQKYGVRVLGTSVEAIMYTEDRDLFVKKLDEIPMKTPKSHA 146

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG  +   + +     L  SS+    Q+L+E+
Sbjct: 147 VESMEEALKAAREIGYPVMVRSAYALGGLGSGICPDEDTFIK--LAESSFTFSKQILVEE 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + D         +F    +            +     +   +Q L
Sbjct: 205 SLKGWKEIEFEVIRDANDHCFTVASMENFDPLGIHTGESIVVAPTCSLTDGQVKM-LQEL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + +G  G     + F+  +     +E+N +  ++  S     +   G+    +  
Sbjct: 264 STKCIRHLGIVGECNIQYAFNAETNDYRVIEVNAR--LSRSS--ALASKATGFPLAFVAA 319

Query: 291 WM 292
            +
Sbjct: 320 KI 321


>gi|322695736|gb|EFY87539.1| aspartate carbamoyltransferase catalytic subunit [Metarhizium
           acridum CQMa 102]
          Length = 2186

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 467 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIHYERPDAIYV 526

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 527 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAS 586

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 587 SVYEAMRVVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQVLIERSM 644

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 645 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 703

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 704 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 753


>gi|254933999|gb|ACT87608.1| carbamoylphosphate synthetase [Gluphisia septentrionis]
          Length = 976

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/273 (13%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALQEEKIQSVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKVFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   LL   + +H DQL+I++
Sbjct: 496 VSSVEEALAAAQQIGYPVMARSAFSLGGLGSGFADNEDEL--KLLAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A    +  G  G     +  +P S + + +E+N
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVN 645


>gi|262201327|ref|YP_003272535.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           bronchialis DSM 43247]
 gi|262084674|gb|ACY20642.1| Carbamoyl-phosphate synthase L chain ATP- binding protein [Gordonia
           bronchialis DSM 43247]
          Length = 680

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+  ++    +P  L+++             +++    T  
Sbjct: 151 APDIGFPVLIKPSAGGGGKGMHRVENADDLPDALVRARREAASAFGDDTLFLEHFVDTPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +  +  +  +   A  A +++G
Sbjct: 211 HIEVQVLADQHGNVIHLGERECSLQRRHQKVIEEAPSVLLDETTRARIGAAACDAARSVG 270

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 271 YTGAGTVEFIVSAHRPDEFFFMEMNTR 297


>gi|332977560|gb|EGK14330.1| acetyl-CoA carboxylase, biotin carboxylase [Desmospora sp. 8437]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+  ++ +   +  +      +      Y++   +   
Sbjct: 149 AREIGYPVIVKATAGGGGKGMRVVHTEEELKRAIQMAQQEAAANFGNPGVYLEKFLVEPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P+      + +++ + A  A QA+ 
Sbjct: 209 HIEIQVLADSHGNTIHLGERDCSIQRRYQKLVEEAPSPALDPSLREKMGQAAVAAAQAVN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 269 YSGAGTVEFLLDKEGN-FYFMEMNTR 293


>gi|329117619|ref|ZP_08246336.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parauberis NCFD 2020]
 gi|326908024|gb|EGE54938.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           parauberis NCFD 2020]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E ++I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMQIKFIGPSASIMDKMGDKINARAEMIKASVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            I            I  P ++K   GG   GI  ++++  +      +S      + +G 
Sbjct: 137 QIHTVEEARKLAASIGFPLMLKASAGGGGKGIRKVEQEVDLVAAFNSASQEAISAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GDA   V  +            K    + +  +       + 
Sbjct: 197 MYMEKVIYPARHIEVQILGDAFGHVIHLGERDCSLQRNNQKVLEESPSIAI----GRSLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+   A  A +A+G       +FL D  S + +++E+N +
Sbjct: 253 QEMGDAAVRAAKAVGYENAGTIEFLLDEASGQFYFMEMNTR 293


>gi|290997572|ref|XP_002681355.1| predicted protein [Naegleria gruberi]
 gi|284094979|gb|EFC48611.1| predicted protein [Naegleria gruberi]
          Length = 740

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 21/184 (11%), Positives = 52/184 (28%), Gaps = 21/184 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   +Q +      S      +    +  ++       
Sbjct: 224 AEKIGYPVMIKASAGGGGKGMRIAYNEQELREGFRLSQDEAIRNFGSDKMLIERFVENPR 283

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +                ++  +       P+ +  +  ++     A    + +G
Sbjct: 284 HIEIQIICDQHGNYLYLPERECSIQRRNQKVIEEAPSSVIDEATRKAMGEQAVALAKEVG 343

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  + L D      ++LE+N +              +       G    +L+  M+
Sbjct: 344 YFSAGTVEMLIDSNKN-FYFLEMNTR----------LQVEHPITEFITGI---DLVEQMI 389

Query: 294 EDAS 297
             A+
Sbjct: 390 RVAA 393


>gi|258451939|ref|ZP_05699955.1| pyruvate carboxylase [Staphylococcus aureus A5948]
 gi|257860154|gb|EEV82986.1| pyruvate carboxylase [Staphylococcus aureus A5948]
          Length = 1150

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 28/229 (12%), Positives = 70/229 (30%), Gaps = 8/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D      +G   E+           I +    +    +  DK++++    
Sbjct: 69  IIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAI 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              +PV P       + +     +     P +IK   GG   G+ +++++  +     ++
Sbjct: 128 KADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRA 187

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            S         E Y++        +    +      +         ++        V P+
Sbjct: 188 KSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPS 247

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 + + +   A    + I        +FL      + F++E+N +
Sbjct: 248 VGLSSTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|158451251|gb|ABW38986.1| putative CAD trifunctional protein [Oxytenis modestia]
          Length = 731

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + ++S    V    +
Sbjct: 191 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 251 VTSVEEALAAAIQIGYPVMARSAFSLGGLGSGFANNEEEL--KALAHQALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRHT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|192291092|ref|YP_001991697.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris TIE-1]
 gi|192284841|gb|ACF01222.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris TIE-1]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M     I  P ++K   GG   G+ V      + L +  + +        
Sbjct: 135 DGGVGPDDDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTADDLALAISTAGNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I  +    
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEESPSPVISPEARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|295703486|ref|YP_003596561.1| pyruvate carboxylase [Bacillus megaterium DSM 319]
 gi|294801145|gb|ADF38211.1| pyruvate carboxylase [Bacillus megaterium DSM 319]
          Length = 1149

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 75/239 (31%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 68  LDI-EGIIDIAKSHDVDAIHPG-YGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFGDKVK 125

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     I       +  +    P +IK   GG   G+ +++   S+ 
Sbjct: 126 ARHQAVQADIPVIPGTDGPIDSIDEAKEFANQHGYPLMIKAALGGGGRGMRIVRDADSLN 185

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   ++GD   +V  +            + 
Sbjct: 186 ESYDRAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDEQGNVVHLYERDCSVQ----RR 241

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       I  D+   +   A    + +        +FL        +++E+N +
Sbjct: 242 HQKVVEVAPSVSIDEDLRLRICEAAVQLMEKVQYINAGTVEFLV--SGNDFYFIEVNPR 298


>gi|258575591|ref|XP_002541977.1| carbamoyl-phosphate synthase, large subunit [Uncinocarpus reesii
           1704]
 gi|237902243|gb|EEP76644.1| carbamoyl-phosphate synthase, large subunit [Uncinocarpus reesii
           1704]
          Length = 1174

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   KPD  F 
Sbjct: 118 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEKEKPDGIFL 177

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  VQ           +++  T    L ++   D         +  +    +
Sbjct: 178 SFGGQTALNLGVQMNRLGIFEKYGVKVLGTSVRTLETSEDRDLFAKALNEINIPIAESIA 237

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 238 VSTVDEALDAADKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 295

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 296 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 354

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 355 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 406


>gi|229589504|ref|YP_002871623.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229361370|emb|CAY48240.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 457

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 83/247 (33%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDR------SVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHS 82
           +V  +   R      +V  +L  LK   A N +H   G   E+      +      +   
Sbjct: 50  EVHLLGPARADKSYLNVEALLGALKATGA-NAVHPGYGFLSENADFAEAVLAAGAIFVGP 108

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  +++     GVPV P     +      + +   +  P +IK   GG  
Sbjct: 109 SPETIRRMGDKAEARRTAQEAGVPVVPGSPGELFDVESALKAAEAVGFPLLIKASAGGGG 168

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            GI + +  + +  +  +S             Y++        +    L   + AV   +
Sbjct: 169 RGIRLAENAEQLAEEFPRSQREAQAAFGNGAVYLERFISRARHIEVQVLGDGQHAVHLFE 228

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 +             +     + +   A    +++G +G    ++L+D ++ + F
Sbjct: 229 RECSLQRRRQKIFEEAPSPALNPQQRETLCTSAVRLTESLGYKGAGTLEYLYDDVTGEFF 288

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 289 FIEMNTR 295


>gi|308235313|ref|ZP_07666050.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis ATCC 14018]
 gi|311115114|ref|YP_003986335.1| biotin carboxylase [Gardnerella vaginalis ATCC 14019]
 gi|310946608|gb|ADP39312.1| biotin carboxylase [Gardnerella vaginalis ATCC 14019]
          Length = 615

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/231 (14%), Positives = 73/231 (31%), Gaps = 9/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  +L     D      +G   E       +      +      A     DK+ +++V
Sbjct: 67  DAIIDILHKSGADAVHPG-YGFLSEVASFAQKVIDAGAVWIGPKPEALIDLGDKITARRV 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            +   VP  P I      +            P ++K   GG   GI V+  D  +    +
Sbjct: 126 ATRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMMKRTDGGGGRGITVVHNDDELRGFYM 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   GD    E +++        +       +             ++  +       
Sbjct: 186 NHDALQGGDLD--EYFIERFIDKARHVETQVGRDSHGNFTIYSTRDCSVQRRNQKLVEEA 243

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA     D   ++ R +    +A+   G+   +++      KV++LE+N +
Sbjct: 244 PAPFLTDDENAQLHRYSRNLFEAVDYVGLGTCEYMVTSQ-HKVYFLEVNPR 293


>gi|146276413|ref|YP_001166572.1| carbamoyl phosphate synthase large subunit [Rhodobacter sphaeroides
           ATCC 17025]
 gi|145554654|gb|ABP69267.1| carbamoyl-phosphate synthase large subunit [Rhodobacter sphaeroides
           ATCC 17025]
          Length = 1109

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 32/315 (10%), Positives = 82/315 (26%), Gaps = 44/315 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPGLADATYIEPITPEVVAKIIEKERPDALLP 88

Query: 57  VLHGNFGEDGLV-------------------QAILELLEIPYTHSGILASALSMDKMRSK 97
            + G  G +  +                   +  +E+ E        +      +   + 
Sbjct: 89  TMGGQTGLNTALALADMGVLETFGVQLIGANREAIEMAEDRKLFREAMDRIGLENPKATI 148

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                               M +   +  P +I+P       G  V              
Sbjct: 149 IAAPKLPNGRYDINAGVAEAMAAIEYVGLPAIIRPAFTLGGTGGGVAYNRDDYEAICRSG 208

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              +   Q+L+++ + G +     +     D   I     +     +      +      
Sbjct: 209 LDASPVAQILVDESLLGWKEYEMEVVRDRADNAIIVCSIENVDPMGVHTGDSITVAPALT 268

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
               +          +  +     G S   +  +P+  ++  +E+N  P ++  S     
Sbjct: 269 LTDKEYQIMRNGSIAVLREIGVETGGSNVQWAINPVDGRMVVIEMN--PRVSRSS--ALA 324

Query: 278 AAYAGYSFRELLLWM 292
           +   G+   ++   +
Sbjct: 325 SKATGFPIAKIAAKL 339



 Score = 44.5 bits (103), Expect = 0.019,   Method: Composition-based stats.
 Identities = 51/316 (16%), Positives = 105/316 (33%), Gaps = 51/316 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL  AG++   I         D D S 
Sbjct: 577 VVILGGGPN-------RIGQGIEFDYCCCHACFALTAAGYETIMINCNPETVSTDYDTSD 629

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L    IP   +   A  
Sbjct: 630 RLYFEPLTLEHVLEILRVEQENGTLHGVIVQFGGQTPLKLAQALAHEGIPILGTTPDAID 689

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL--VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           L+ D+ R +++++  G+    + +             I  P VI+P        + +++ 
Sbjct: 690 LAEDRERFQKLLNDLGLKQPINGMARSRDEAFAIAGRIGYPLVIRPSYVLGGRAMEIVRD 749

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   + ++   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 750 DAQLERYIREAVQVSGTSPVLLDSYLAGAIEVDVDALCDGENVHVAGIMEHIEEAG---V 806

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +  +  +E++R      +A+   G+    F        +F LE+N +
Sbjct: 807 HSGDSACCLPPHSLSAETIEELKRQTVEMARALHVVGLMNVQFAI--KDGVIFVLEVNPR 864

Query: 266 PGMTPVSIFPEMAAYA 281
              T     P +A   
Sbjct: 865 ASRT----VPFVAKAT 876


>gi|319649680|ref|ZP_08003836.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317398842|gb|EFV79524.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 447

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 71/232 (30%), Gaps = 7/232 (3%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
             ++  +      D      +G   E+ +    +    I +         L  DK+ S+ 
Sbjct: 62  TEAILEIAKRENVDGIHPG-YGFLSENAVFARAVINAGIAFIGPDPETIELMGDKIVSRN 120

Query: 99  VVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            +   GVPV P                  +  P ++K   GG  +G++  + +Q++    
Sbjct: 121 TMKEAGVPVVPGSGEGTSTLEEACRLADSMGYPVMLKASGGGGGIGMVRCENEQALAKSF 180

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             + +         E +++        +           +         ++         
Sbjct: 181 DSTKARAKAYFGSDEVFIEKYIENARHVEIQVFGDHHGNIVHLFERDCSIQRRHQKVVEE 240

Query: 215 LPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            P+    +  K+        A +A+  +     +F+ D      ++LE+N +
Sbjct: 241 SPSPFLSEQTKQKMYETALTAAKAVNYKNAGTIEFIVDEQEN-FYFLEMNTR 291


>gi|330919048|ref|XP_003298451.1| hypothetical protein PTT_09186 [Pyrenophora teres f. teres 0-1]
 gi|311328318|gb|EFQ93443.1| hypothetical protein PTT_09186 [Pyrenophora teres f. teres 0-1]
          Length = 1244

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/271 (12%), Positives = 76/271 (28%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
             D    L +A  +   A    +G   E+      +    + +      A      K  +
Sbjct: 65  YTDEDAILKIAKDRNADAIIPGYGFLSENADFARRVGDAGLEWVGPSPEAIEAFGVKHTA 124

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + +     VP+ P     +      +     I  P ++K   GG  +G+I   K   +  
Sbjct: 125 RGLAEKANVPIVPGTKGLVEDEDAAVREAERIGFPVMLKATGGGGGMGLITCSKVGEVRE 184

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++        +                     ++       
Sbjct: 185 GFRMVQSRGKTLFKNPGVFLEAFYPASHHIEVQVFGNGMGQAVHFGERECSIQRRHQKVI 244

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+       ++ +++   A    ++I        ++L D  S   F+LE+N      
Sbjct: 245 EECPSPFVERHPELRQKLGDAAVRLAESIRYGSAGTIEYLVDDASGDFFFLEMNT----- 299

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M+  A
Sbjct: 300 ------RLQVEHGITELCYGVDLVELMLRQA 324


>gi|171911340|ref|ZP_02926810.1| pyruvate carboxylase [Verrucomicrobium spinosum DSM 4136]
          Length = 1176

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 35/237 (14%), Positives = 69/237 (29%), Gaps = 11/237 (4%)

Query: 37  DVDRSVGLVLAHLK-PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
            +D    + LA  K  D      +G   E+    A      I +         +  DK  
Sbjct: 83  YLDIEGIVALAKEKGVDAIHPG-YGFLSENPDFAAACAREGIIFIGPDPKVLNMMGDKTA 141

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ V     VP                     I  P +IK   GG   G+ V++K + + 
Sbjct: 142 ARNVADKLKVPTLQGTHDPIDNRKEALSAAKKIGFPLIIKAAFGGGGRGMRVVQKPEELE 201

Query: 152 LDLLQSS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
             L ++        G+  +  +   G      V   A        +   +      +   
Sbjct: 202 RLLDEAQTEAKRAFGNGAVFLEKFVGRAKHIEVQILADKHG--NVLHLHERDCSVQRRHQ 259

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     I  +I   +   A    + +        ++L D  +   +++E+N +
Sbjct: 260 KVIEQAPSYGIDQNIIDGLCASAVNIAREVNYSHAGTVEYLVDVDTGDWYFIEMNPR 316


>gi|167921411|ref|ZP_02508502.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei BCC215]
          Length = 481

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDTLCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 280 VGYRGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|153941029|ref|YP_001392951.1| biotin carboxylase [Clostridium botulinum F str. Langeland]
 gi|152936925|gb|ABS42423.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum F str. Langeland]
          Length = 448

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETIAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGNFYFMEMNTR 292


>gi|57168907|ref|ZP_00368037.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
 gi|305431942|ref|ZP_07401109.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
 gi|57019743|gb|EAL56429.1| carbamoyl-phosphate synthase, large subunit [Campylobacter coli
           RM2228]
 gi|304445026|gb|EFM37672.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
          Length = 480

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVGR-IIEIAKACGADAIHPG-YGFLSENYDFAKACEEAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K++ +
Sbjct: 120 ARKLMAQNGIPIVPGTEKLNAYSMDEIKVFAEKIGYPVILKASGGGGGRGIRVVHKEEEL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFDSCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|324997705|ref|ZP_08118817.1| phosphoribosylglycinamide formyltransferase 2 [Pseudonocardia sp.
           P1]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 71/268 (26%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VDR----SVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V  +D                +D     ++  ++    PDL    +
Sbjct: 23  GKEVAIAFQRLGVEVVAVDRYPHAPAHQVAHRWHAIDMTDPVTLATLIEQESPDLIIPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                             +P   +  L       +  + + +                  
Sbjct: 83  EAIATTALAAIEAAGTTVVPTARAAQLTMDREGIRRLAAEELGLPT-SPYAFADTLDEVR 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V+K             +   G        V+G    
Sbjct: 142 AAVDRVGLPCVLKPVMSSSGKGQSVLKSADDAEAA--WEYARTSGRVSAPRVIVEGFVEF 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               + +        P  +        + +A    +A+
Sbjct: 200 D--YEITQLTVRHAGGTAFCDPIGHRQENGDYVESWQPQPMSDAALAASRDVAGRITEAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RGI   +        +V + E++ +P
Sbjct: 258 GGRGIFGVELFV--RGDEVLFSEVSPRP 283


>gi|291619125|ref|YP_003521867.1| AccC [Pantoea ananatis LMG 20103]
 gi|291154155|gb|ADD78739.1| AccC [Pantoea ananatis LMG 20103]
 gi|327395455|dbj|BAK12877.1| biotin carboxylase AccC [Pantoea ananatis AJ13355]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFVGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGSLTDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 PELRSFIGERCTRACIDIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|242083634|ref|XP_002442242.1| hypothetical protein SORBIDRAFT_08g016820 [Sorghum bicolor]
 gi|241942935|gb|EES16080.1| hypothetical protein SORBIDRAFT_08g016820 [Sorghum bicolor]
          Length = 2248

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/169 (14%), Positives = 54/169 (31%), Gaps = 5/169 (2%)

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  +     +      + S  ++  P +IK   GG   GI  +  D  +     Q 
Sbjct: 193 CHSIPEEIYKNACVSTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRALFKQV 252

Query: 158 SSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                G  + I +       L   ++ D   +V  +            +           
Sbjct: 253 QGEVPGSPIFIMKVASQSRHLEVQLLCDKHGNVAALHSRDCSVQ----RRHQKIIEEGPI 308

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                D  KE+++ A    + +   G +  ++L+   + + ++LE+N +
Sbjct: 309 TVAAPDTVKELEQAARRLAKCVQYVGAATVEYLYSMETGEYYFLELNPR 357


>gi|84501581|ref|ZP_00999753.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
 gi|84390202|gb|EAQ02761.1| propionyl-CoA carboxylase, alpha subunit [Oceanicola batsensis
           HTCC2597]
          Length = 681

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 23/181 (12%), Positives = 50/181 (27%), Gaps = 21/181 (11%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ +   D         S +           +++        +
Sbjct: 150 EIGYPVMIKASAGGGGKGMRIAWTDDEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCR 241
               L  +             ++  +       P+    +  +      A    +A+G  
Sbjct: 210 EIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEETRRAMGEQAVALAKAVGYA 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVED 295
                +F+ D      ++LE+N +              +       G    +L+  M+  
Sbjct: 270 SAGTVEFIVDGEKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRI 315

Query: 296 A 296
           A
Sbjct: 316 A 316


>gi|319785076|ref|YP_004144552.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317170964|gb|ADV14502.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 454

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 25/165 (15%), Positives = 54/165 (32%), Gaps = 8/165 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   GI +            Q+ +           Y++ +      +   
Sbjct: 153 FPVMIKAAAGGGGRGIRIANSLAEFEQAFPQAEAEALAAFGDGGLYMEKVIGKARHIEVQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L     A+   +      +             +   + +E+   A    +A+   G   
Sbjct: 213 VLADGSDAIHCYERECSLQRRRQKVWEEAPSRALSDRLREELCASAVALAKAVKYSGAGT 272

Query: 246 SDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPEMAAYAG 282
            ++L+D  + + +++E+N       P    +T + +  EM   AG
Sbjct: 273 VEYLYDDEADRFYFIEMNTRIQVEHPVTEAITGIDLVAEMLRIAG 317


>gi|259015989|gb|ACV89277.1| putative CAD trifunctional protein [Panorpa sp. BMW-2009]
          Length = 612

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 41  SGSQAIKALQEEKIQTILINPNIATVQTSKGLADKVYFLPLTLEYVEQVIKAERPNGVLL 100

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G  G +         +     +    + I +   + D+      V+     V    +
Sbjct: 101 TFGGQTGLNVGVELERAKVFSKYNVRILGAPIQSIIDTEDRKIFADKVNEIGEKVAPSAA 160

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG       + +    L + ++ H  QL+I++
Sbjct: 161 VYSVQEALDAAEKLGYPVMARAAFSLGGLGSGFADNIEELKN--LATQAFAHSSQLIIDK 218

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 219 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSDREYNMLRTT 277

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S   + +E+N +  ++  S     +   GY    +  
Sbjct: 278 AIKVIRHFGVVGECNIQYALNPYSEDYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 333

Query: 291 WM 292
            +
Sbjct: 334 KL 335


>gi|295671456|ref|XP_002796275.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb01]
 gi|226284408|gb|EEH39974.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb01]
          Length = 1203

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K   GG  +G++    ++ +        S           +++    +   +
Sbjct: 111 KLGFPVMLKATAGGGGMGLLTCHSEEEVRESFATVKSRGEALFKNGGMFIERYYPSSHHI 170

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIG 239
                                ++          P+       ++ +++   A    ++  
Sbjct: 171 EVQVFGNGLGKAIHFGERECSIQRRHQKVVEECPSPFVTKHPELRQKLCDAAVRLAESTK 230

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L D  +   F+LE+N +
Sbjct: 231 YASAGTIEYLVDDDTGDFFFLEMNTR 256


>gi|225681855|gb|EEH20139.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Paracoccidioides brasiliensis Pb03]
          Length = 1204

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 44/146 (30%), Gaps = 3/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K   GG  +G++    ++ +        S           +++    +   +
Sbjct: 112 KLGFPVMLKATAGGGGMGLLTCHSEEEVRESFATVKSRGEALFKNGGMFIERYYPSSHHI 171

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQAIG 239
                                ++          P+       ++ +++   A    ++  
Sbjct: 172 EVQVFGNGLGKAIHFGERECSIQRRHQKVVEECPSPFVTKHPELRQKLCDAAVRLAESTK 231

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L D  +   F+LE+N +
Sbjct: 232 YASAGTIEYLVDDDTGDFFFLEMNTR 257


>gi|298489651|ref|YP_003719828.1| acetyl-CoA carboxylase biotin carboxylase ['Nostoc azollae' 0708]
 gi|298231569|gb|ADI62705.1| acetyl-CoA carboxylase, biotin carboxylase ['Nostoc azollae' 0708]
          Length = 448

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 73/217 (33%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIVFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  ++        I  P +IK   GG   G+ ++  +       L +            
Sbjct: 138 LVESDQEGKLIAKDIGYPVMIKATAGGGGRGMRLVLSEDEFVKLFLAAQGEAGAAFGNAG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++  +       P+     ++ + + 
Sbjct: 198 VYIEKSIERPRHIEFQILADSYGNVIHLGERDCSIQRRNQKLLEEAPSPALDEELRERMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A + I   G    +FL D  S K +++E+N +
Sbjct: 258 QAAVKAARFINYTGAGTIEFLLD-KSGKFYFMEMNTR 293


>gi|194379850|dbj|BAG58277.1| unnamed protein product [Homo sapiens]
          Length = 474

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 147 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 207 RHIEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 263 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 309

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 310 EWQLRIAAGEK 320


>gi|126458740|ref|YP_001055018.1| carbamoyl phosphate synthase large subunit [Pyrobaculum
           calidifontis JCM 11548]
 gi|126248461|gb|ABO07552.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum
           calidifontis JCM 11548]
          Length = 1025

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A ++ G +   ++ +                       +  VL   +PD    
Sbjct: 26  SGSQALKAFKEEGIETVLVNPNIATIQTSKILADRVYFIPIQRPFLEGVLEKERPDAVAC 85

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V+           + +  T    +  ALS D  +     +    P    
Sbjct: 86  GFGGQTALSACVELDESGALAKYGVRVIGTPVRGIRRALSRDLFQRAMREAGIPTPPSKP 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P V++        G  V K ++++   + ++ + +   ++L+E+
Sbjct: 146 ARSPEEALAVAAEIGYPVVVRVSFNLGGAGAFVAKTEEALRARVYKAFAQSAIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G                  AV   +       ++  +        +  + Y++ + +
Sbjct: 206 YLEGW-KEVEFEVVRDSYDNVAAVVCMENVDPMGVHTGDSIVVAPCLTLTDEEYQKARDI 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    +AI   G        +    + + +E N  P M+  S     +  +GY    +  
Sbjct: 265 SIGVARAIELVGEGNVQVAVNYAGPEQYAIETN--PRMSRSS--ALASKASGYPLAYIAA 320

Query: 291 WM 292
            +
Sbjct: 321 KL 322


>gi|45357686|ref|NP_987243.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis S2]
 gi|74556120|sp|Q6M0Z5|PURT_METMP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|45047246|emb|CAF29679.1| Phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis S2]
          Length = 388

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 73/248 (29%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            K   ID+  +  +  V+   KPDL    +     +            +P  ++  L   
Sbjct: 52  HKYHIIDMKDAGALRAVIEKEKPDLIVPEIEAINTDTLKEMESEGYHVVPTANATKLTMD 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + + +                  ++   I  P +IKP+   S  G   IK + 
Sbjct: 112 REGIRRLAFEKLGLRT-AKYEFAENLEELKEAVTRIGIPCIIKPIMSSSGKGQSTIKSES 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + S   G          G ++          ++T +    ++   +      
Sbjct: 171 DIKTAWNYAKSAARG---------IGTKVIVEEFIKFDYEITLLTARTAEGTRFCEPIGH 221

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 222 IQVDGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|332526555|ref|ZP_08402667.1| putative biotin carboxylase protein [Rubrivivax benzoatilyticus
           JA2]
 gi|332110823|gb|EGJ11000.1| putative biotin carboxylase protein [Rubrivivax benzoatilyticus
           JA2]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/218 (17%), Positives = 71/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +      A  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPTPEAIRMMGDKVSAKQAMLRAGVPCVPGTDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                 +  +     I  P +IK   GG   G+ V+  + ++   +  + +         
Sbjct: 137 ALPEDPKEIIRQARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVQTTRTEAGAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L                ++          P   IP  I   V
Sbjct: 197 AVYMEKFLENPRHVEIQVLADNYRNAVWLGERDCSMQRRHQKVIEEAPAPNIPRRIVDRV 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + IG RG    +FL+   + + F++E+N +
Sbjct: 257 GERCAAACKKIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|331697311|ref|YP_004333550.1| carbamoyl-phosphate synthase large subunit [Pseudonocardia
           dioxanivorans CB1190]
 gi|326952000|gb|AEA25697.1| carbamoyl-phosphate synthase, large subunit [Pseudonocardia
           dioxanivorans CB1190]
          Length = 1099

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 45/302 (14%), Positives = 93/302 (30%), Gaps = 31/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L   G +VS ++ +                       V LV+A  +PD    
Sbjct: 29  SGTQACRVLRSEGLRVSLVNSNPATIMTDPEIADATYVEPITPEFVELVIAAERPDALLA 88

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G    +  +       LE   +    + + A     D+++ K++V S G  V  S +
Sbjct: 89  TLGGQTALNTAIALHDNGVLERYGVELIGADVEAIQRGEDRLKFKEIVQSVGGDVPRSAV 148

Query: 113 VNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +           +  P VI+P      LG  +    + +        + +   ++LIE+
Sbjct: 149 CHSMDEVRAAVAELGLPVVIRPSFTMGGLGSGMAHTPEDLDRLAGAGLAASPVTEVLIEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            V G +     +     D   +     +     +      +          +        
Sbjct: 209 SVLGWKEYELELMRDHADNVVVVCSIENLDPMGVHTGDSITVAPAMTLTDREYQTMRDVG 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
             +        G     F  DP + ++  +E+N  P ++  S     +   G+   ++  
Sbjct: 269 IAVLRAVGVDTGGCNIQFAVDPRTGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAA 324

Query: 291 WM 292
            +
Sbjct: 325 KL 326


>gi|299140852|ref|ZP_07033990.1| carbamoyl-phosphate synthase, large subunit [Prevotella oris C735]
 gi|298577818|gb|EFI49686.1| carbamoyl-phosphate synthase, large subunit [Prevotella oris C735]
          Length = 1074

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+    PD    
Sbjct: 28  SGSQALKALHEEGIETVLINPNIATVQTSEGVADRIYFLPVQPYFVERVIQKEHPDGVLL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +     +    + + A   + D+    + ++   V    S  
Sbjct: 88  SFGGQTALNCGVELEQTGVFAKYGVKVLGTPVAAIMNTEDRELFVEQLNEINVKTIKSEA 147

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      +  +    L   +++   Q+L+E+
Sbjct: 148 CENVEEARKAASSLGYPVIVRAAYALGGLGSGFADDETELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCVTVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|269102602|ref|ZP_06155299.1| phosphoribosylglycinamide formyltransferase 2 [Photobacterium
           damselae subsp. damselae CIP 102761]
 gi|268162500|gb|EEZ40996.1| phosphoribosylglycinamide formyltransferase 2 [Photobacterium
           damselae subsp. damselae CIP 102761]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 80/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++A  KP      +
Sbjct: 22  GKEVAIECQRLGVEVIAVDRYPNAPAMHVAHRSHVIDMLDGEALQQIIATEKPHYIVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +S             +  +
Sbjct: 82  EAIATDTLVELEKQGLNVVPTANATKLTMNREGIRRLAAETLSIPT-SPYRFADTYQDFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P V+KP+   S  G  VIK             +   G        V+G    
Sbjct: 141 DAIEFVGTPCVVKPIMSSSGKGQSVIKS--EADYATAWQYAQEGGRAGQGRVIVEGFVEF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +        Q +A     A+
Sbjct: 199 DYEITLLTIRAVDGIHFCAPIGHRQEDG--DYRESWQPQAMTEQALIAAQDVAAKVVDAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 257 GGYGLFGVELFV--KGDQVLFSEVSPRPHDTGM 287


>gi|218526264|gb|ACK86539.1| carbamoyl-phosphate synthase [Sialis nr. mohri SLW-2008]
          Length = 718

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 127 SGSQAIKALKEENIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIKSERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   + + E        + I +   + D+      ++     V    +
Sbjct: 187 TFGGQTALNCGIELEQENVFEKYNCKILGTPISSIIETEDRKIFADRINEIGEKVAPSAA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 247 VYSVEEALKAAEVLGYPVMARAAFSLGGLGSGFANNKEELIN--LAQQALAHSNQLIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSDREYNMLRTT 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 364 AIKVIKHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|170728448|ref|YP_001762474.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
            ATCC 51908]
 gi|169813795|gb|ACA88379.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
            ATCC 51908]
          Length = 1518

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 44/266 (16%), Positives = 97/266 (36%), Gaps = 23/266 (8%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  +   D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYENVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             + GVPV P            ++  + I  P ++K ++GG   GI V+++   +     Q
Sbjct: 1065 QANGVPVVPGSHGILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVERPGDMISLFQQ 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDQFGNTKVLGIRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP 266
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N       P
Sbjct: 1185 STMLPE----ELKEKVLEYTRALGNATDYMGAGTVEFIYNLDANEVYFMEMNTRLQVEHP 1240

Query: 267  GMTPVSIFPEMAA----YAGYSFREL 288
                 S    ++A     AG S  +L
Sbjct: 1241 VTEATSCIDIVSAGFDIAAGRSIEDL 1266


>gi|156935775|ref|YP_001439691.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cronobacter
           sakazakii ATCC BAA-894]
 gi|156534029|gb|ABU78855.1| hypothetical protein ESA_03645 [Cronobacter sakazakii ATCC BAA-894]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIIAAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVEQSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|146340460|ref|YP_001205508.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. ORS278]
 gi|146193266|emb|CAL77282.1| acetyl CoA carboxylase, biotin carboxylase subunit [Bradyrhizobium
           sp. ORS278]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 72/219 (32%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  ++  M     I  P ++K   GG   G+ V   +  + L L  +++        
Sbjct: 135 DGAVTPDQDAMAIAKAIGFPVLVKAAAGGGGRGMKVAHTEADLQLALTTAANEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L                L+          P+ +  +    +
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPVLDVASRAK 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +      A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGNTVAKAMQELKYIGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|107102440|ref|ZP_01366358.1| hypothetical protein PaerPA_01003502 [Pseudomonas aeruginosa PACS2]
          Length = 661

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++   L   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPDQLLEQLRTARSEALGAFGSAELILEKAVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|33603474|ref|NP_891034.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella
           bronchiseptica RB50]
 gi|81836840|sp|Q7WEY0|PURT_BORBR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33577598|emb|CAE34863.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella
           bronchiseptica RB50]
          Length = 406

 Score = 48.3 bits (113), Expect = 0.001,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 77/284 (27%), Gaps = 32/284 (11%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D   +  V+   +P +    +
Sbjct: 29  GKEVVIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
                +  +       + +  T      +       R               +   +   
Sbjct: 89  EAIATDLLVALEDEGAVRVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--- 174
                 I  P VIKP+   S  G  +I+    I        +   G        V+G   
Sbjct: 149 EAIDGGIGYPCVIKPVMSSSGKGQSIIRSADDIAAA--WRYAQEGGRVGAGRVIVEGFIE 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   +       V +        +          P  +     +  + +A   
Sbjct: 207 FDYEITLLTVRARGADGQIVTQFCEPIGHRQVDGDYVESWQPHPMSPAALQRSREIALAV 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSIF 274
              +G  GI   +        +V++ E++ +P   GM T +S  
Sbjct: 267 TGDLGGLGIFGVELFV--AGDQVWFSEVSPRPHDTGMVTLISQV 308


>gi|325845214|ref|ZP_08168521.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sp. HGF1]
 gi|325488758|gb|EGC91160.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Turicibacter
           sp. HGF1]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/184 (13%), Positives = 56/184 (30%), Gaps = 21/184 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ VI  +         +             Y++       
Sbjct: 148 AKEIGYPVLVKASAGGGGRGMRVINSEDEFEDLFQTAKLEAKMSFGDDSMYMEKFIENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++  +       P+ +  ++ ++    +A LA + +G
Sbjct: 208 HIEFQILADQFGNVVHLYDRDCSVQRRNQKVIEEAPSPVLDELTRQKMGEIAVLAAKTVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +FL D      +++E+N +              +       G    +L+   +
Sbjct: 268 YENAGTIEFLLDKHQN-FYFIEMNTR----------IQVEHPITEMITGI---DLIKEQI 313

Query: 294 EDAS 297
           + AS
Sbjct: 314 KIAS 317


>gi|268527761|gb|ACZ06066.1| biotin carboxylase [Arachis hypogaea]
          Length = 540

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/221 (16%), Positives = 76/221 (34%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
           +LH   G   E+ +   +     I +      +  +  DK  ++  +   GVP  P    
Sbjct: 151 MLHPGCGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKKAGVPTVPGSDG 210

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +   + I  P +IK   GG   G+ + K+       L Q+ S     + +  
Sbjct: 211 LLQTTEEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDG 270

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +   +   +   V+ D   +V               + +           +  ++ 
Sbjct: 271 VYLEKYVQNPRHIEFQVLADKYGNVVHFGGRDCSIQ----RRNQKLLEEAPSPALTPELR 326

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +   A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 327 KAMGDAAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 366


>gi|302799709|ref|XP_002981613.1| hypothetical protein SELMODRAFT_154584 [Selaginella moellendorffii]
 gi|300150779|gb|EFJ17428.1| hypothetical protein SELMODRAFT_154584 [Selaginella moellendorffii]
          Length = 499

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            H I  P +IK   GG   G+ +  + +     L Q+ S     + +    L     +  
Sbjct: 196 AHEIGFPVMIKATAGGGGRGMRLANEPEEFVKLLQQARSEAGAAFGNDGVYLERYIKNPR 255

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            + +           +  ++ K +   A  A 
Sbjct: 256 HIEFQVLADKHGNCIHLGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGDAAVAAA 311

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
            +IG  G+   +FL D  S   +++E+N       P +T +            S  +L+ 
Sbjct: 312 ASIGYVGVGTIEFLLDE-SGSFYFMEMNTRIQVEHP-VTEL-----------ISSTDLIE 358

Query: 291 WMVEDA 296
             +  A
Sbjct: 359 EQIRVA 364


>gi|254934069|gb|ACT87643.1| carbamoylphosphate synthetase [Podosesia syringae]
          Length = 976

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKVQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSGVFEKYNVTVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 496 VCSVEKALAAASQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  +++ 
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYYMLRQT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|264677857|ref|YP_003277763.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
 gi|262208369|gb|ACY32467.1| carbamoyl-phosphate synthase L chain [Comamonas testosteroni CNB-2]
          Length = 657

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
             +I  P ++K + GG   G+ +++  + +   L  + S         +  V+   +   
Sbjct: 147 AAMIGYPVMVKAVAGGGGRGMRLVESAKQLHAALNSARSEALAGFGNGDLLVERAVMHPR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           V         ++          P+     ++ +++   A    +A G
Sbjct: 207 HVEVQVFADGHGHVIHLGERDCSVQRRHQKIIEEAPSPAVNAELREQMGSCAVALAKAAG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL     R+ + +E+N +
Sbjct: 267 YVGAGTVEFLV--EGRQFYLMEMNTR 290


>gi|218526256|gb|ACK86535.1| carbamoyl-phosphate synthase [Quasispermophorella ingwa]
          Length = 726

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +PD    
Sbjct: 132 SGSQAIKALKEENIQTILMNPNIATVQTSKGLADKVYFLPLIPEYVEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V+     V    +
Sbjct: 192 TFGGQTALNCGVELEQAGVFKKYGVQILGTPIKSIIETEDRKIFAERVNEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++  +I  P + +       LG         +   +L S +  H +QL+I++
Sbjct: 252 VYSVQEALNAAEVIGYPVMARAAFSLGGLGSGFANNADEL--KILASQALAHSNQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLRGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|8886467|gb|AAF80468.1|AF163149_1 acetyl-CoA carboxylase [Glycine max]
 gi|2253384|gb|AAC02267.1| biotin carboxylase precursor [Glycine max]
          Length = 539

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/252 (16%), Positives = 83/252 (32%), Gaps = 31/252 (12%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P     +   
Sbjct: 152 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKATARETMKKAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 212 EEAIRLANEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 272 YIQNPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A  A  +IG  G+   +FL D      +++E+N       P         EM      S
Sbjct: 328 AAVAAAASIGYIGVGTIEFLLDER-GSFYFMEMNTRIQVEHP-------VTEM-----IS 374

Query: 285 FRELLLWMVEDA 296
             +L+   +  A
Sbjct: 375 STDLIEEQIRVA 386


>gi|148262385|ref|YP_001229091.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter
           uraniireducens Rf4]
 gi|146395885|gb|ABQ24518.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Geobacter uraniireducens Rf4]
          Length = 392

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 86/318 (27%), Gaps = 49/318 (15%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDR-SVGLVLAHLKPDLAFNVL 58
           GK      +  G +V  +D                   +DR  +  V+   +PD     +
Sbjct: 22  GKEVVIEAQRLGVEVIAVDRYPNAPAMQVAHRSHVVNMLDREELSRVIRLERPDYIVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L         IP   +  L       +  + + +                  
Sbjct: 82  EAINTPYLLELEKEGFAVIPTARATNLTMNREGIRRLAAEELGLPT-AQYLFATSMEEFS 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIEL 177
                I  P V+KP+   S  G  V++    +      +     G    +I +     + 
Sbjct: 141 AGVERIGLPCVVKPIMSSSGKGQSVVRDAADLERAWTYAMEGARGASDKVIIEEFIPFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++     D T    P         +          P  +   +  E +R A     A
Sbjct: 201 EITLLTVRYSDGTRFCPPIGHV-----QIKGDYHESWQPMAMTPQVLAEAERQAKAVTDA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-----------GYSFR 286
           +G  GI   +        +V++ E++ +P      +   ++              G    
Sbjct: 256 LGGFGIFGVELFI--KGDRVWFSEVSPRP--HDTGMVTMVSQNMSEFELHVRAILGLPVP 311

Query: 287 ELLLW-------MVEDAS 297
           E++         ++ DA+
Sbjct: 312 EVVNLAPAASHVILADAT 329


>gi|330888670|gb|EGH21331.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 567

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/269 (12%), Positives = 80/269 (29%), Gaps = 12/269 (4%)

Query: 32  KVSQIDVDR--SVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGIL 85
             + I+  +  +V  ++   +PD     + G        D   + +LE   +    +   
Sbjct: 7   DATYIEPIKWQTVAKIIEKERPDALLPTMGGQTALNCALDLEREGVLEKFGVEMIGANAD 66

Query: 86  ASALSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
               + D+ R  + + S G+    S               +  P +I+P       G  +
Sbjct: 67  TIDKAEDRSRFDKAMKSIGLACPRSGIAHSMEEANAVLEKLGFPCIIRPSFTMGGTGGGI 126

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               +       +    +   +LLI++ + G +     +     D   I     +F    
Sbjct: 127 AYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKKDNCIIVCSIENFDPMG 186

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +      +          +          +  +     G S   F   P + ++  +E+N
Sbjct: 187 VHTGDSITVAPAQTLTDKEYQILRNASLAVLREIGVETGGSNVQFGICPDTGRMVVIEMN 246

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             P ++  S     +   G+    +   +
Sbjct: 247 --PRVSRSS--ALASKATGFPIARVAAKL 271


>gi|302681893|ref|XP_003030628.1| hypothetical protein SCHCODRAFT_77734 [Schizophyllum commune H4-8]
 gi|300104319|gb|EFI95725.1| hypothetical protein SCHCODRAFT_77734 [Schizophyllum commune H4-8]
          Length = 1164

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/296 (14%), Positives = 85/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  VL   +PD    
Sbjct: 103 SGSQALKALSEEGIEAILINPNIATWQTSHQLASQVYFLPITADYVAYVLEKERPDGILL 162

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G          D +       +++  T    L  +   D            V    +
Sbjct: 163 TFGGQSALNVGIALDHMGVLERLGVQVLGTPIRTLEVSEDRDLFVQALKEIDIPVAQSTA 222

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG    +    +    L + S +   Q+LIE+
Sbjct: 223 VSSVNAALQAAETIGYPVILRSAFTLGGLGSGFAENPDELRD--LSAKSLSLSPQVLIER 280

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +P D Y  ++  
Sbjct: 281 SMKGW-KELEYEVVRDGADNTIICCNMENFDPLGTHTGDSIVVAPSQTLPDDEYHMLRSA 339

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P S++   +E+N +  ++  S     +   GY   
Sbjct: 340 AIKTIRHLGVVGECNIQYALHPSSKEYCVIEVNAR--LSRSS--ALASKATGYPLA 391


>gi|254556959|ref|YP_003063376.1| pyruvate carboxylase [Lactobacillus plantarum JDM1]
 gi|254045886|gb|ACT62679.1| pyruvate carboxylase [Lactobacillus plantarum JDM1]
          Length = 1144

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+      +    + +         +  DK+ 
Sbjct: 62  LDI-EDIIRIAKENHVDAIHPG-YGFLSENATFARRIAEEGMTFVGPKPEHLEMFGDKIT 119

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V    GV   PS L         +        P +IK   GG   G+ ++ +   + 
Sbjct: 120 AKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVHEASELQ 179

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +       S+   +  L +   +   +   ++ DA  +V  +            K 
Sbjct: 180 EAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVMHLFERDCSVQRRNQKV 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   LP     ++ +++   A    +++     +  +FL      + +++E+N +
Sbjct: 240 IEFAPAVALPI----ELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYFMEVNPR 292


>gi|300768273|ref|ZP_07078178.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
 gi|300494337|gb|EFK29500.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum ATCC
           14917]
          Length = 1143

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+      +    + +         +  DK+ 
Sbjct: 61  LDI-EDIIRIAKENHVDAIHPG-YGFLSENATFARRIAEEGMTFVGPKPEHLEMFGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V    GV   PS L         +        P +IK   GG   G+ ++ +   + 
Sbjct: 119 AKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVHEASELQ 178

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +       S+   +  L +   +   +   ++ DA  +V  +            K 
Sbjct: 179 EAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVMHLFERDCSVQRRNQKV 238

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   LP     ++ +++   A    +++     +  +FL      + +++E+N +
Sbjct: 239 IEFAPAVALPI----ELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYFMEVNPR 291


>gi|156391945|ref|XP_001635810.1| predicted protein [Nematostella vectensis]
 gi|156222907|gb|EDO43747.1| predicted protein [Nematostella vectensis]
          Length = 1093

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 65/233 (27%), Gaps = 10/233 (4%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +  +L+              +     + + +    +         S L ++      
Sbjct: 114 NPKLPDLLSKNNITFIGPPAEAMWSLGDKIASTIIAQTVGIPTLPWSGSGLVIENHTEVL 173

Query: 99  V-----VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
                      +    S+      +     I  P +IK  +GG   GI     D      
Sbjct: 174 EQGGVLTVPDELYDQASMNEVTDGLKIARSIGYPVMIKASEGGGGKGIRKANNDDEFTNF 233

Query: 154 LLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
             Q         + I +  +    L   ++ D   +   +            +       
Sbjct: 234 FRQVQIEVPSSPIFIMKVAEHSRHLEVQLLVDEYGNAVSLFGRDCSVQ----RRHQKIIE 289

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A    +  ++++  A    + +G       ++L++P   K F+LE+N +
Sbjct: 290 EAPAAVAKPETLRKMEEDAINLAKVVGYVSAGTVEYLYNPDDDKYFFLELNPR 342


>gi|149916372|ref|ZP_01904892.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp.
           AzwK-3b]
 gi|149809826|gb|EDM69678.1| acetyl-CoA carboxylase, biotin carboxylase [Roseobacter sp.
           AzwK-3b]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/221 (14%), Positives = 69/221 (31%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENANFVQIVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +            I  P +IK   GG   G+ V +    +    + + S     + + +
Sbjct: 137 GVPTLAEAKRLGEEIGYPVIIKATAGGGGRGMKVAQTAADMERAFMTARSEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD       +            +             I  +  
Sbjct: 197 VYIEKYLQTPRHIEIQVFGDGKGGAVHLGERDCSLQ----RRHQKVFEEAPGPCITAEER 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +    A  AI   G    +FL+     + +++E+N +
Sbjct: 253 ARIGKTCADAVAAINYAGAGTIEFLY--EHGEFYFIEMNTR 291


>gi|146329352|ref|YP_001209335.1| acetyl-CoA carboxylase, biotin carboxylase [Dichelobacter nodosus
           VCS1703A]
 gi|146232822|gb|ABQ13800.1| acetyl-CoA carboxylase, biotin carboxylase [Dichelobacter nodosus
           VCS1703A]
          Length = 447

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/151 (15%), Positives = 54/151 (35%), Gaps = 11/151 (7%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQYVDG 174
             H I  P +IK   GG   G+ V+ KD  +   +         ++ +    + +     
Sbjct: 148 MAHQIGYPVIIKAAGGGGGRGMRVVHKDAELIDAVKLTKTEAKQAFGNDMVYMEKYLEKP 207

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V+ D+  +   +A           +            +I     + + ++   A
Sbjct: 208 RHVEIQVLADSHGNAIHLAERDCSLQ----RRHQKVMEEAPAPQITAKQREIIGKICTDA 263

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG  G    +FL+   + + +++E+N +
Sbjct: 264 CKRIGYLGAGTFEFLY--ENGQFYFIEMNTR 292


>gi|121728809|ref|ZP_01681821.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae V52]
 gi|147673455|ref|YP_001216796.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           O395]
 gi|121628897|gb|EAX61353.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae V52]
 gi|146315338|gb|ABQ19877.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           O395]
 gi|227013145|gb|ACP09355.1| putative phosphoribosylglycinamide formyltransferase [Vibrio
           cholerae O395]
          Length = 393

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYAEAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQLMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|262169454|ref|ZP_06037146.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           RC27]
 gi|262022267|gb|EEY40976.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           RC27]
          Length = 391

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYAEAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQLMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|28870100|ref|NP_792719.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|28853346|gb|AAO56414.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
          Length = 450

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ ++Q +   +  +           E Y++   +   
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNPELYIEKFLVQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          PA      +   V      A + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGVDAALMTRVGERCAQACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|153947962|ref|YP_001399384.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           pseudotuberculosis IP 31758]
 gi|152959457|gb|ABS46918.1| acetyl-CoA carboxylase, biotin carboxylase [Yersinia
           pseudotuberculosis IP 31758]
          Length = 449

 Score = 48.3 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL---------------AHLKPDLAFNVLH-- 59
                 A ++ G K   +    DR +  VL               ++L      +     
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLSDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|327309486|ref|XP_003239434.1| protein kinase subdomain-containing protein [Trichophyton rubrum
           CBS 118892]
 gi|326459690|gb|EGD85143.1| protein kinase subdomain-containing protein [Trichophyton rubrum
           CBS 118892]
          Length = 2262

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 505 SGSQAIKALNEEGIYTVLINPNIATIQTSKGLADKVYFLPVNADFVRKVIKRERPDAIYV 564

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E  E+     G     +   + R     S   +    +   +  
Sbjct: 565 TFGGQTALQVGIQLKDEFEELGVKVLGTPIDTIITTEDRELFARSMEVIGEKCAKSASAS 624

Query: 117 TMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
            ++        I  P +++       LG    + D  +    L + ++    Q+LIE+ +
Sbjct: 625 NLEEAMEAVKGIGFPVIVRAAYALGGLGSGFAENDDQLRD--LCTKAFAASPQVLIERSM 682

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 683 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 741

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 742 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 791


>gi|86750137|ref|YP_486633.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris HaA2]
 gi|86573165|gb|ABD07722.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Rhodopseudomonas palustris HaA2]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTARRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M     I  P ++K   GG   G+ V    + + + +  + +        
Sbjct: 135 DGAVGPDDDAMSIAREIGFPVLVKAAAGGGGRGMKVAHTAEDLSMAISTAGNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I  +    
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEESPSPVISAEARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGGICAKAMQDMSYVGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|39935501|ref|NP_947777.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodopseudomonas
           palustris CGA009]
 gi|39649353|emb|CAE27876.1| biotin carboxylase [Rhodopseudomonas palustris CGA009]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILSDHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M     I  P ++K   GG   G+ V    + + L +  + +        
Sbjct: 135 DGGVGPDDDAMAIAKEIGFPVLVKAAAGGGGRGMKVAHTAEDLALAISTAGNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I  +    
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEESPSPVISPEARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|28378755|ref|NP_785647.1| pyruvate carboxylase [Lactobacillus plantarum WCFS1]
 gi|308180947|ref|YP_003925075.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
 gi|28271592|emb|CAD64497.1| pyruvate carboxylase [Lactobacillus plantarum WCFS1]
 gi|308046438|gb|ADN98981.1| pyruvate carboxylase [Lactobacillus plantarum subsp. plantarum
           ST-III]
          Length = 1144

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/239 (13%), Positives = 78/239 (32%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+      +    + +         +  DK+ 
Sbjct: 62  LDI-EDIIRIAKENHVDAIHPG-YGFLSENATFARRIAEEGMTFVGPKPEHLEMFGDKIT 119

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V    GV   PS L         +        P +IK   GG   G+ ++ +   + 
Sbjct: 120 AKRVARDAGVQTIPSTLHPVTSLNEALQFTQQYGYPIMIKAAMGGGGRGMRIVHEASELQ 179

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               +       S+   +  L +   +   +   ++ DA  +V  +            K 
Sbjct: 180 EAFDRARSEAMQSFGDDEIYLEKFIANPKHIEVQILADAHGNVMHLFERDCSVQRRNQKV 239

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   LP     ++ +++   A    +++     +  +FL      + +++E+N +
Sbjct: 240 IEFAPAVALPI----ELRQKICNAAVDLMKSVHYLNAATVEFLV--EGDQFYFMEVNPR 292


>gi|322706828|gb|EFY98408.1| aspartate carbamoyltransferase catalytic subunit [Metarhizium
           anisopliae ARSEF 23]
          Length = 1889

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 468 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIHYERPDAIYV 527

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 528 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAS 587

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 588 NVDEAMRVVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQVLIERSM 645

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 646 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 704

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 705 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 754


>gi|259015965|gb|ACV89265.1| putative CAD trifunctional protein [Halictophagidae sp. BMW-2009]
          Length = 669

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 88/303 (29%), Gaps = 35/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD-------RSVGL--------------VLAHLKPDLAFN 56
           SG     AL +   +   I+ +       +S                 V+   KPD    
Sbjct: 81  SGSQAIKALSEEHVETILINPNIATVQTSKSFADKVYFLPLTVDYIESVIKVEKPDGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCP 109
              G      G +     +     +    + I +   + D+      + +     +    
Sbjct: 141 TFGGQTALNCGIELYXANVFHNYGVKVLGTPIESIMRTEDRKLFADAIKNELDEKIVPSI 200

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           ++      + + +++  P + +       LG      D  +     Q+ +    +QL+I+
Sbjct: 201 AVTSVEDALKAANVLQYPVLTRAAFTLGGLGSGFANNDNELREIAKQALANT--NQLIID 258

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D         +     +                 + Y  +++
Sbjct: 259 KSLKGWKEIEYEVVRDKYDNCITICNMENLDPVGIHTGESIVVAPSQTLNNFE-YNMLRQ 317

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    +     G     F  +P S + + +E+N +  ++  S     +   GY    + 
Sbjct: 318 TAIKVIRHFQIVGECNIQFALNPHSFEYYIIEVNAR--LSRSS--ALASKATGYPLAYVA 373

Query: 290 LWM 292
             +
Sbjct: 374 AKL 376


>gi|50119220|ref|YP_048387.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pectobacterium
           atrosepticum SCRI1043]
 gi|49609746|emb|CAG73180.1| biotin carboxylase [Pectobacterium atrosepticum SCRI1043]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 ILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                     ++      I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLDGDMDKNRAFGKRIGYPVIIKASGGGGGRGMRVVRSDKELEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    +   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVMADGQGNAVYLAERDCSMQRRHQKVVEEAPAPGITDELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RNIGERCAKACIDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|314933311|ref|ZP_07840676.1| pyruvate carboxylase [Staphylococcus caprae C87]
 gi|313653461|gb|EFS17218.1| pyruvate carboxylase [Staphylococcus caprae C87]
          Length = 1153

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 71  ERIIDVAKRAGVDAIHPG-YGFLSENEQFARRCAEENIKFIGPHLEHLDMFGDKVKARTT 129

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     I               P +IK   GG   G+ +++++  +     
Sbjct: 130 AIKADLPVIPGTDGPIESFEAAKQFAQEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 189

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 190 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDELGNIIHLYERDCSVQRRHQKVVEVA 249

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 250 PSVGLSNSLRERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 298


>gi|304384924|ref|ZP_07367270.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici DSM 20284]
 gi|304329118|gb|EFL96338.1| carbamoyl-phosphate synthase large subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 819

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 96/282 (34%), Gaps = 13/282 (4%)

Query: 19  GKACASALE-DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELL 75
             +    L+    F V+++ V+ ++  +L   + D+   V+   G       +     L 
Sbjct: 50  ANSVIPQLDVPINFIVTELTVN-NLIQILREHEIDVILPVVGNTGGLQLAEQLNESGILK 108

Query: 76  EIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIK 131
           E+     G+  + +               +         +   +  +     +  P +IK
Sbjct: 109 ELNIRTMGVTTTTIHNINNPELMNKVLRHIKEPIIPTTVVENEKNAVMFAKRVGFPILIK 168

Query: 132 PLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
           P+   +    I    +  +   L  +   +  +Q+ +E+ V G      +      + ++
Sbjct: 169 PIASLTKTNRIKCDNEHQLQEVLETAFKVSTTNQVAVEKSVVG-YKEIEMTVIRDAEGSK 227

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           + +  ++  +    +S  +        +    ++E++  A    + +  +G+    +  D
Sbjct: 228 LLINGAEDLNPIGVHSGDSIIFSPTQTLTDTEFQELRASALKITEVLKIKGVCHVQYALD 287

Query: 252 PLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           P + K F   IN  P     + F   A   GY    ++  ++
Sbjct: 288 PTNGKYFVTRIN--PFFDRTTAF--AARATGYPVATVVAEIL 325


>gi|304385498|ref|ZP_07367843.1| acetyl-CoA carboxylase, biotin carboxylase [Pediococcus
           acidilactici DSM 20284]
 gi|304328705|gb|EFL95926.1| acetyl-CoA carboxylase, biotin carboxylase [Pediococcus
           acidilactici DSM 20284]
          Length = 431

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   ED L   ++    + +            DK RS+++    GV   P    
Sbjct: 77  AIHPGYGFLSEDPLFATMVAECGLTWIGPSPDQIQRYADKERSRELAQKRGVLTIPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I  +R    +   +  P ++K   GG   GI V   +Q +   +      +         
Sbjct: 137 ITDDRQIKPAAEKLGFPVLLKASFGGGGKGIRVAHDEQELAQIIAVVRQESGASFGSSPL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++  +L      +  +      +      +  ++          PA + ++  + + + 
Sbjct: 197 YLE-RDLQNARHIEVQVLGLNEQIIILGDRNCSIQLHRQKVVEESPANLTIEQRERLYQA 255

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   G   +   +FL   +  + ++LE+N +
Sbjct: 256 VHRLLDQSGYESLGTVEFL--QVGEEFYFLEMNTR 288


>gi|300121715|emb|CBK22290.2| Propionyl-CoA carboxylase subunit ? [Blastocystis hominis]
          Length = 688

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 69/248 (27%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   K          D      +G   E+      LE   I +   
Sbjct: 93  EAVYIGPSPSAQSYLVADKIVEACRKTGADAVHPG-YGFLSENWRFAETLEKEGIIWCGP 151

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSS 138
           G  A     DK+ SK +     V   P       +        + I  P +IK   GG  
Sbjct: 152 GKYAIEAMGDKIGSKILAVKAKVNTIPGFNGEINSDEEVLRIANDIGYPVMIKASAGGGG 211

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +   D+        S             +++        +    L           
Sbjct: 212 KGMRIAWNDKEALSGFHLSKQEAKSAFGDDRMFIEKYIEEPRHIEIQVLGDKFGNYCAFP 271

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P+ +  +  +    + A +  +A+        +FL D      
Sbjct: 272 ERECSIQRRNQKVIEESPSVLLDEETRTAMGKQACMMAKAVNYCSAGTVEFLCDKHKN-F 330

Query: 258 FWLEINVQ 265
           ++LE+N +
Sbjct: 331 YFLEMNTR 338


>gi|292486764|ref|YP_003529634.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora CFBP1430]
 gi|292900836|ref|YP_003540205.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Erwinia
           amylovora ATCC 49946]
 gi|291200684|emb|CBJ47816.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Erwinia
           amylovora ATCC 49946]
 gi|291552181|emb|CBA19218.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora CFBP1430]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPPPSVKSYLNIPALISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGDRCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|291279663|ref|YP_003496498.1| pyruvate carboxylase [Deferribacter desulfuricans SSM1]
 gi|290754365|dbj|BAI80742.1| pyruvate carboxylase [Deferribacter desulfuricans SSM1]
          Length = 1144

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 14/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    K +      +G   E        +   I +         +  DK  +K +
Sbjct: 66  DEIVDLCVRKKIEFVHPG-YGFLAESYEFAEKCQKTGIKFIGPSPETIKIFGDKKIAKDL 124

Query: 100 VSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              CGVPV      I            I  P +IK   GG   GI ++  ++ +  +   
Sbjct: 125 AKECGVPVIEGSDIINSLEEAKSLAKSIGYPLMIKATAGGGGRGIRIVHNEKELAENFDS 184

Query: 157 -----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                  ++ + D +L +       +   ++ D   ++  +            K   +  
Sbjct: 185 AKSEAFKAFANDDVILEKYIEKPKHIEVQLLADKYGNIVHLYERDCSIQRRHQKLIEIAP 244

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +P      +  ++   A    +       +  +FL D  +   ++LE+N +
Sbjct: 245 AFTIPE----KVLNQMYEAAIEIGKKSHLVSAATVEFLVD-KNNNFYFLEVNPR 293


>gi|288560297|ref|YP_003423783.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
 gi|288543007|gb|ADC46891.1| D-alanine-D-alanine ligase [Methanobrevibacter ruminantium M1]
          Length = 379

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 101/283 (35%), Gaps = 30/283 (10%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILA 86
            + +    +D+ + + +   K D    ++           + + I +   IP   S   A
Sbjct: 42  KYYIVPRGMDKPMEVAIEE-KVDAIIPLIGIDPPLKDLAIMKEKIEKENNIPVISSNFNA 100

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLI------SPPYVIKPLKGGSSLG 140
             ++ DK+++K+   S G+ V  + ++N+    ++           P V+K  +G     
Sbjct: 101 VDIASDKIKTKEFFKSIGLNVPEAKVLNKDDFSNEGEFLEKLGFQFPIVLKQGEGQGGKD 160

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           I +  + + +             +Q L+E +++G      +            VP     
Sbjct: 161 ICITSQFEDVLQYFESF------NQALVENFIEG--AEVSIEVIGWNGEYLPLVPVYKGD 212

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
           +       +      P        +E ++LA      +G  G    D ++     KV+ +
Sbjct: 213 TSLEGIHPIKRLRYGPCDFEAIDNEEFRQLAKKIAVNLGSEGTIDMDLIYSREENKVYAI 272

Query: 261 EINVQP-----------GMTPVSIFPEMAAYAGYSFRELLLWM 292
           EIN +P           G++P+ +  ++A    +  ++L   +
Sbjct: 273 EINTRPSGTRYLSYATTGLSPLGLLVDIA-AGNFDVKDLENKI 314


>gi|270291211|ref|ZP_06197434.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Pediococcus
           acidilactici 7_4]
 gi|270280607|gb|EFA26442.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Pediococcus
           acidilactici 7_4]
          Length = 431

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 72/215 (33%), Gaps = 9/215 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   ED L   ++    + +            DK RS+++    GV   P    
Sbjct: 77  AIHPGYGFLSEDPLFATMVAECGLTWIGPSPDQIQRYADKERSRELAQKRGVLTIPGSGL 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I  +R    +   +  P ++K   GG   GI V   +Q +   +      +         
Sbjct: 137 ITDDRQIKPAAEKLGFPVLLKASFGGGGKGIRVAHDEQELAQIIAVVRQESGASFGSSPL 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++  +L      +  +      +      +  ++          PA + ++  + + + 
Sbjct: 197 YLE-RDLQNARHIEVQVLGLNEQIIILGDRNCSIQLHRQKVVEESPANLTIEQRERLYQA 255

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   G   +   +FL   +  + ++LE+N +
Sbjct: 256 VHRLLDQSGYESLGTVEFL--QVGEEFYFLEMNTR 288


>gi|271967673|ref|YP_003341869.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Streptosporangium
           roseum DSM 43021]
 gi|270510848|gb|ACZ89126.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Streptosporangium
           roseum DSM 43021]
          Length = 656

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IKP  GG   G+++++    +P  L  +              ++       
Sbjct: 141 AERVGFPALIKPSAGGGGKGMVLVRTAAELPDALESARRTAAAAFGDATLLIERFVENPR 200

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +  T   V         L+          P+ +        +   A  A +++G
Sbjct: 201 HIEIQVMADTHGNVVHLGERECSLQRRHQKIIEEAPSPLLDAATRASMGAAAVEAARSVG 260

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+    +   +++E+N +
Sbjct: 261 YVGAGTVEFIVQGATGDYYFMEMNTR 286


>gi|239623095|ref|ZP_04666126.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239522462|gb|EEQ62328.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/219 (13%), Positives = 65/219 (29%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +        +   +K  +++ +    VPV P    
Sbjct: 77  AIHPGFGFLSENAKFAKLCAECNITFIGPSAEIISKMGNKSEARKTMMEAEVPVVPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK---KDQSIPLDLLQSSSWNHGDQL 166
            +   +  ++    I  P +IK   GG   G+ + +       +       S     D  
Sbjct: 137 PVHTPQDGLEMAKTIGFPVMIKASSGGGGKGMRISRSAEDFTELFNAAQMESVKGFSDDT 196

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +              A        V   +      +             I  ++ + 
Sbjct: 197 MYIEKYIEKPRHVEFQIMADKHG--NVVHLGERDCSIQRRHQKVLEEAPCDVISPELRRR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +A+G       +FL D      +++E+N +
Sbjct: 255 MGDTAVRAAKAVGYENAGTIEFLLDKDKN-FYFMEMNTR 292


>gi|194378454|dbj|BAG57977.1| unnamed protein product [Homo sapiens]
          Length = 426

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 59  HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 118

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 119 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 174

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 175 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 221

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 222 EWQLRIAAGEK 232


>gi|153801908|ref|ZP_01956494.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MZO-3]
 gi|124122553|gb|EAY41296.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           MZO-3]
          Length = 393

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYKFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|126179544|ref|YP_001047509.1| ATP-grasp enzyme-like protein [Methanoculleus marisnigri JR1]
 gi|125862338|gb|ABN57527.1| ATP-grasp enzyme-like protein [Methanoculleus marisnigri JR1]
          Length = 383

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 84/255 (32%), Gaps = 21/255 (8%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE-LLEIPYTHSGILASALSMDKMRSK 97
              V  ++   + D    + +    +  L+Q  LE  +++P      +  A + DK    
Sbjct: 60  SEFVYDLVKREQFDAILPISYAAVDQISLIQERLEPYIKVPLPDRASIDLAGNKDKTMQL 119

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  +P                 +S P V+K  +   ++G       + +     + 
Sbjct: 120 AESIGIAIPKTFYPQSLEDAERIAESLSYPVVVKGARENGNVGYA--NSCEELISQYKKI 177

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           S+++     ++++Y+ G       + +           +   Y      S+L  +   P 
Sbjct: 178 SAFSP----IVQEYITGRGYGFFALYNHGEAKAIFMHRRLREYPVTGGPSALAESIYDPV 233

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +   +             ++   G++  +F  D  + +   +EIN +      S+  E+
Sbjct: 234 LMEQGL---------KLLDSLQWHGVAMVEFKKDERTGRYVLMEINPKF---WGSL--EL 279

Query: 278 AAYAGYSFRELLLWM 292
           A  +G  F  L   M
Sbjct: 280 AIASGVDFPYLTCRM 294


>gi|14573195|gb|AAK67986.1|AF297332_1 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo
           sapiens]
          Length = 725

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|51476873|emb|CAH18403.1| hypothetical protein [Homo sapiens]
          Length = 575

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 44  HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 103

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 104 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 159

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 160 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 206

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 207 EWQLRIAAGEK 217


>gi|33591890|ref|NP_879534.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella pertussis
           Tohama I]
 gi|81836366|sp|Q7W006|PURT_BORPE RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33571534|emb|CAE41012.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella pertussis
           Tohama I]
 gi|332381307|gb|AEE66154.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella pertussis
           CS]
          Length = 404

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/284 (13%), Positives = 77/284 (27%), Gaps = 32/284 (11%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D   +  V+   +P +    +
Sbjct: 29  GKEVVIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPQALRQVIEQERPHVVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
                +  +       + +  T      +       R               +   +   
Sbjct: 89  EAIATDLLVALEDEGAVHVTPTARAAHLTMNREGIRRLAAETLGLPTSPYRFVDTEQALR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--- 174
                 I  P VIKP+   S  G  +I+    I        +   G        V+G   
Sbjct: 149 EAIDGGIGYPCVIKPVMSSSGKGQSIIRSADDIAAA--WRYAQEGGRVGAGRVIVEGFIE 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   +       V +        +          P  +     +  + +A   
Sbjct: 207 FDYEITLLTVRARGADGQIVTQFCEPIGHRQVDGDYVESWQPHPMSPVALQRSREIALAV 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-TPVSIF 274
              +G  GI   +        +V++ E++ +P   GM T +S  
Sbjct: 267 TGDLGGLGIFGVELFV--AGDQVWFSEVSPRPHDTGMVTLISQV 308


>gi|116805327|ref|NP_064551.3| methylcrotonoyl-CoA carboxylase subunit alpha, mitochondrial
           precursor [Homo sapiens]
 gi|108861983|sp|Q96RQ3|MCCA_HUMAN RecName: Full=Methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial; Short=MCCase subunit alpha; AltName:
           Full=3-methylcrotonyl-CoA carboxylase 1; AltName:
           Full=3-methylcrotonyl-CoA carboxylase biotin-containing
           subunit; AltName: Full=3-methylcrotonyl-CoA:carbon
           dioxide ligase subunit alpha; Flags: Precursor
 gi|12382296|gb|AAG53095.1|AF310972_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens]
 gi|9049352|dbj|BAA99407.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit [Homo
           sapiens]
          Length = 725

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|12276066|gb|AAG50245.1|AF310339_1 3-methylcrotonyl-CoA carboxylase alpha subunit [Homo sapiens]
 gi|10434789|dbj|BAB14377.1| unnamed protein product [Homo sapiens]
 gi|13278846|gb|AAH04187.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens]
 gi|13278915|gb|AAH04214.1| Methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Homo sapiens]
 gi|119598746|gb|EAW78340.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), isoform CRA_b
           [Homo sapiens]
          Length = 725

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 194 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 253

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 254 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 309

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 310 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 356

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 357 EWQLRIAAGEK 367


>gi|325922470|ref|ZP_08184236.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas gardneri ATCC 19865]
 gi|325547043|gb|EGD18131.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas gardneri ATCC 19865]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF     + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--EDGRFYFIEMNTR 292


>gi|312864219|ref|ZP_07724453.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           vestibularis F0396]
 gi|322517364|ref|ZP_08070239.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           vestibularis ATCC 49124]
 gi|311100220|gb|EFQ58429.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           vestibularis F0396]
 gi|322124061|gb|EFX95614.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           vestibularis ATCC 49124]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFSTLCEEMNIKFIGPSGKVMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    +  P ++K   GG   GI  +  ++ +      +S      + +G 
Sbjct: 137 EVFTAEEALEVAKRLGYPVMLKASAGGGGKGIRKVNTEEELAPAFESASQEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+        +FL D  S + +++E+N +
Sbjct: 257 S----AAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNTR 293


>gi|292656488|ref|YP_003536385.1| carbamoyl-phosphate synthase large subunit [Haloferax volcanii DS2]
 gi|291370643|gb|ADE02870.1| carbamoyl-phosphate synthase, large subunit [Haloferax volcanii
           DS2]
          Length = 1082

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/328 (14%), Positives = 96/328 (29%), Gaps = 54/328 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + V+ GG        +  G+             AL D G     ++ +            
Sbjct: 582 VVVVGGGP-------IRIGQGVEFDYCSVHAVQALRDMGIDAHVVNNNPETVSTDYDTSD 634

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL------LEIPYTHSGI 84
                      V  V+  +  D       G    +       EL       EI  T    
Sbjct: 635 GLFFEPITAEEVADVIEAIDADGVMLQFGGQTSVNIGHPLESELDRRGVDCEILGTTIDA 694

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +  A   D+            P   S       +D  + +  P +++P        + ++
Sbjct: 695 MDLAEDRDRFNRLMDDLGILQPEGGSATSEEEALDLANDLGYPVLVRPSYVLGGRAMEIV 754

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
             D  +   + ++   +    +LI+++  DG+EL    + D    +    +   +     
Sbjct: 755 HSDADLKEYIEEAVRVSPDKPILIDEFLADGVELDVDAVSDGEDVLIGGVMEHVETAG-- 812

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL---SRKVFWL 260
             +S  ++  + P  +  +    V+ +      A+   G+             S  V+ L
Sbjct: 813 -VHSGDSACMIPPRSLDDETMARVREVTEDIASALDTVGLMNVQLAVKRNEDGSNDVYVL 871

Query: 261 EINVQPGMTPVSIFPEMAAYAGYSFREL 288
           E N +   T     P ++   G    +L
Sbjct: 872 EANPRSSRT----VPFVSKATGVPIAKL 895


>gi|194397759|ref|YP_002037106.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae G54]
 gi|194357426|gb|ACF55874.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae G54]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K   +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A + +G       +FL D  S   +++E+N +
Sbjct: 257 A----AAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNTR 293


>gi|220928369|ref|YP_002505278.1| carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           cellulolyticum H10]
 gi|219998697|gb|ACL75298.1| Carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           cellulolyticum H10]
          Length = 513

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/148 (16%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P +IKP  GG   G+ + K    +     +S S           +++     
Sbjct: 146 QIASSIGYPVMIKPAAGGGGKGMYIAKSKDELKDAFFKSQSMAESIFHNDSVFIERYYTD 205

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQA 237
              +    L      V         ++          P   I  ++  E+   A    + 
Sbjct: 206 VHHIEVQLLADKYGNVVHLGERECSIQRRFQKIVEEAPCLTISQELKNEIFEYAVSIAKE 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   G    +FL+   + +VF+LE+N +
Sbjct: 266 VHYTGAGTVEFLY--SNGEVFFLELNTR 291


>gi|187479583|ref|YP_787608.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella avium
           197N]
 gi|123724903|sp|Q2KUD7|PURT_BORA1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|115424170|emb|CAJ50723.1| phosphoribosylglycinamide formyltransferase 2 [Bordetella avium
           197N]
          Length = 405

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 74/281 (26%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDR-SVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                    D  ++  V+   +P +    +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPAALRAVIEQERPHIIVPEI 88

Query: 59  HG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                     ++        P   +  L       +  + + +     P       +   
Sbjct: 89  EAIATDLLVELEQEGVARVTPTARAARLTMNREGIRRLAAETLGLPTSPYQFVDTQDALQ 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P VIKP+   S  G  VI+    +      +      G    I +     +
Sbjct: 149 QAIDGGIGYPCVIKPVMSSSGKGQSVIRGPGDLDAAWRYAQEGGRVGGGRAIVEGFIDFD 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +  V               +          P  +        + +A     
Sbjct: 209 YEITLLTVRARGVDGQIETHFCDPIGHKQVDGDYVESWQPHPMSPAALARAREIALGVTG 268

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G  GI   +        +V++ E++ +P      +   +
Sbjct: 269 NLGGLGIFGVELFV--AGDQVWFSEVSPRP--HDTGMVTMI 305


>gi|115449579|ref|XP_001218643.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114187592|gb|EAU29292.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1188

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 49/141 (34%), Gaps = 1/141 (0%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG   G+ ++++   +  +L ++ S         +  ++    +   + 
Sbjct: 586 IGFPVMLKASAGGGGKGMRIVREAGQLKEELERAKSEAQRSFGSSDLILEKYLESSKHVE 645

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-LAFLAHQAIGCRG 242
              +  +   V         ++          P     +  ++     A    + IG   
Sbjct: 646 IQIVGDSHGEVLSFGDRDCSVQRRHQKVIEETPCTFLAEQVRQKMAATAVRIAKLIGYEN 705

Query: 243 ISRSDFLFDPLSRKVFWLEIN 263
               +F+ D  + + ++LE+N
Sbjct: 706 AGTVEFIVDVQTGRFYFLEVN 726


>gi|15900344|ref|NP_344948.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TIGR4]
 gi|111657616|ref|ZP_01408351.1| hypothetical protein SpneT_02001197 [Streptococcus pneumoniae
           TIGR4]
 gi|148983822|ref|ZP_01817141.1| biotin carboxylase subunit [Streptococcus pneumoniae SP3-BS71]
 gi|148993967|ref|ZP_01823337.1| biotin carboxylase subunit [Streptococcus pneumoniae SP9-BS68]
 gi|148996828|ref|ZP_01824546.1| biotin carboxylase subunit [Streptococcus pneumoniae SP11-BS70]
 gi|149007985|ref|ZP_01831542.1| biotin carboxylase subunit [Streptococcus pneumoniae SP18-BS74]
 gi|149023712|ref|ZP_01836192.1| biotin carboxylase subunit [Streptococcus pneumoniae SP23-BS72]
 gi|168482661|ref|ZP_02707613.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1873-00]
 gi|168485559|ref|ZP_02710067.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1087-00]
 gi|168488115|ref|ZP_02712314.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae SP195]
 gi|168490663|ref|ZP_02714806.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC0288-04]
 gi|168495032|ref|ZP_02719175.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC3059-06]
 gi|168576856|ref|ZP_02722706.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae MLV-016]
 gi|169834267|ref|YP_001693932.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae Hungary19A-6]
 gi|182683393|ref|YP_001835140.1| acetyl-CoA carboxylase [Streptococcus pneumoniae CGSP14]
 gi|221231290|ref|YP_002510442.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225856153|ref|YP_002737664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae P1031]
 gi|225858278|ref|YP_002739788.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae 70585]
 gi|225860448|ref|YP_002741957.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|237650359|ref|ZP_04524611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae CCRI 1974]
 gi|237822047|ref|ZP_04597892.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae CCRI 1974M2]
 gi|298230878|ref|ZP_06964559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae str. Canada MDR_19F]
 gi|298254612|ref|ZP_06978198.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae str. Canada MDR_19A]
 gi|298502218|ref|YP_003724158.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|303255404|ref|ZP_07341470.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae BS455]
 gi|303259501|ref|ZP_07345478.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP-BS293]
 gi|303262364|ref|ZP_07348307.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP14-BS292]
 gi|303264782|ref|ZP_07350699.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS397]
 gi|303266621|ref|ZP_07352506.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS457]
 gi|303268854|ref|ZP_07354641.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS458]
 gi|307067072|ref|YP_003876038.1| biotin carboxylase [Streptococcus pneumoniae AP200]
 gi|307126639|ref|YP_003878670.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 670-6B]
 gi|9789237|gb|AAF98279.1|AF197933_9 acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae]
 gi|14971895|gb|AAK74588.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae TIGR4]
 gi|147757403|gb|EDK64442.1| biotin carboxylase subunit [Streptococcus pneumoniae SP11-BS70]
 gi|147760497|gb|EDK67473.1| biotin carboxylase subunit [Streptococcus pneumoniae SP18-BS74]
 gi|147923969|gb|EDK75081.1| biotin carboxylase subunit [Streptococcus pneumoniae SP3-BS71]
 gi|147927556|gb|EDK78583.1| biotin carboxylase subunit [Streptococcus pneumoniae SP9-BS68]
 gi|147929649|gb|EDK80641.1| biotin carboxylase subunit [Streptococcus pneumoniae SP23-BS72]
 gi|168996769|gb|ACA37381.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae Hungary19A-6]
 gi|172043636|gb|EDT51682.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1873-00]
 gi|182628727|gb|ACB89675.1| acetyl-CoA carboxylase [Streptococcus pneumoniae CGSP14]
 gi|183571203|gb|EDT91731.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC1087-00]
 gi|183573043|gb|EDT93571.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae SP195]
 gi|183574948|gb|EDT95476.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC0288-04]
 gi|183575094|gb|EDT95622.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae CDC3059-06]
 gi|183577497|gb|EDT98025.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae MLV-016]
 gi|220673750|emb|CAR68249.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae ATCC 700669]
 gi|225721113|gb|ACO16967.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 70585]
 gi|225726037|gb|ACO21889.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae P1031]
 gi|225727372|gb|ACO23223.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae Taiwan19F-14]
 gi|298237813|gb|ADI68944.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae TCH8431/19A]
 gi|301793666|emb|CBW36051.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae INV104]
 gi|301799524|emb|CBW32071.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae OXC141]
 gi|301801336|emb|CBW34019.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pneumoniae INV200]
 gi|302597649|gb|EFL64729.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pneumoniae BS455]
 gi|302636463|gb|EFL66955.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP14-BS292]
 gi|302639435|gb|EFL69893.1| acetyl-CoA carboxylase [Streptococcus pneumoniae SP-BS293]
 gi|302641635|gb|EFL71995.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS458]
 gi|302643865|gb|EFL74127.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS457]
 gi|302645649|gb|EFL75879.1| acetyl-CoA carboxylase [Streptococcus pneumoniae BS397]
 gi|306408609|gb|ADM84036.1| Biotin carboxylase [Streptococcus pneumoniae AP200]
 gi|306483701|gb|ADM90570.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae 670-6B]
 gi|327390834|gb|EGE89174.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA04375]
 gi|332075270|gb|EGI85740.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA17570]
 gi|332076869|gb|EGI87331.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA17545]
 gi|332077708|gb|EGI88169.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA41301]
 gi|332202333|gb|EGJ16402.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA41317]
 gi|332203595|gb|EGJ17662.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA47368]
 gi|332204451|gb|EGJ18516.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           pneumoniae GA47901]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K   +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A + +G       +FL D  S   +++E+N +
Sbjct: 257 A----AAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNTR 293


>gi|295103153|emb|CBL00697.1| Predicted ATP-grasp enzyme [Faecalibacterium prausnitzii SL3/3]
          Length = 383

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/233 (11%), Positives = 61/233 (26%), Gaps = 11/233 (4%)

Query: 37  DVDRSVGLVLAHLK---PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           D+  +   +L  +K    D+       +       +  L        +   +        
Sbjct: 63  DLKGTEEWILKLVKSGEYDVVIPFTEYSATILSHHKKELSTYAHLIVNDQDVFDYAQDKN 122

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
              K  + +                     I  P ++KP  G  S G   I   + +   
Sbjct: 123 NVMKVCMENDLPCPMTIYDAKSVDDILASNIKFPIILKPSHGFGSHGFHKIGTKEELAAC 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + +         +      +G       +  A     +        ++Y           
Sbjct: 183 VEKFDIDVSEMVVQEYIPQEG-------LNVADNLFVDKEGNTKSAFTYASYRFYPIDGG 235

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                  +D  K++  ++    + +G  G    D + D        LE+N++P
Sbjct: 236 SGVLNETID-RKDIHDISTQLVKKMGLHGPVGVDMIIDARDDTPKVLEVNLRP 287


>gi|325981089|ref|YP_004293491.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
 gi|325530608|gb|ADZ25329.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
          Length = 453

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/144 (14%), Positives = 49/144 (34%), Gaps = 3/144 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   G+ V+  + ++   ++ + +           Y +        +
Sbjct: 151 EIGYPVILKAAGGGGGRGMRVVHTEAALSNAVVMTRNEAQSAFGNPTVYAEKFLENPRHI 210

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
               L                L+          PA    + +  ++      A + I  R
Sbjct: 211 EFQLLIDEHGHAVHLGERDCSLQRRHQKILEEAPAPGISEKLRNKIGERCADACRRIKYR 270

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G+   +FLF   + + +++E+N +
Sbjct: 271 GVGTFEFLF--ENNEFYFIEMNTR 292


>gi|238921357|ref|YP_002934872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           ictaluri 93-146]
 gi|238870926|gb|ACR70637.1| acetyl-CoA carboxylase, biotin carboxylase subunit, putative
           [Edwardsiella ictaluri 93-146]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAQSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +L + +     +
Sbjct: 134 SDGPLDDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLAQSILMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|218264965|ref|ZP_03478597.1| hypothetical protein PRABACTJOHN_04307 [Parabacteroides johnsonii
           DSM 18315]
 gi|218221684|gb|EEC94334.1| hypothetical protein PRABACTJOHN_04307 [Parabacteroides johnsonii
           DSM 18315]
          Length = 1072

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 94/307 (30%), Gaps = 39/307 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGISTVLLNPNIATIQTSEGVADKVYFLPITPYFVEEVIKKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G +      L    +    + + A   + D+    + +    V      +
Sbjct: 88  AFGGQTALNCGTELYTSGTLAKYGVKVLGTSVEAIMYTEDRDLFVKKLDEIAVKTPVSHA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +I+       +G  + K +  +    L  S++ +  Q+L+E+
Sbjct: 148 VENLEDAVKAAYEIGFPVMIRSAYALGGMGSGICKDEAELRS--LAESAFAYSPQVLVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D     V   +     +            +    ++   ++ L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVVSMENVDPLGVHTGESIVVAPTCSLTDKEL-DLLKEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA---- 281
           +    + +G  G     + F+  +     +E+N          +  S +P     A    
Sbjct: 265 STKTIRHLGIVGECNIQYAFNSETCDYRVIEVNARLSRSSALASKASGYPLAFVAAKLAL 324

Query: 282 GYSFREL 288
           GYS  E+
Sbjct: 325 GYSLDEI 331


>gi|149181856|ref|ZP_01860345.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
 gi|148850395|gb|EDL64556.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V K +Q +   +  +             Y++       
Sbjct: 148 AEKIGYPVIIKATAGGGGKGIRVAKTEQELIKGVNITQQEAATAFGNPGVYIEKFIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P+     +  +++ + A  A QA+ 
Sbjct: 208 HVEIQVLGDNFGNVIHLGERDCTIQRRLQKLIEETPSPALDGETREQMGQAAVKAAQAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD ++ K +++E+N +
Sbjct: 268 YSGAGTVEFIFDHVNNKFYFMEMNTR 293


>gi|115525955|ref|YP_782866.1| carbamoyl phosphate synthase large subunit [Rhodopseudomonas
           palustris BisA53]
 gi|115519902|gb|ABJ07886.1| carbamoyl-phosphate synthase large subunit [Rhodopseudomonas
           palustris BisA53]
          Length = 1109

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/307 (11%), Positives = 89/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLA-------------- 54
           SG      L+  G+++  +         D + +    +  + P++               
Sbjct: 29  SGTQAVKTLKQEGYRIVLVNSNPATIMTDPELADATYIEPITPEIVAKIIEKERYVIPGG 88

Query: 55  ---FNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                 + G               LE  ++    +   A   + D+ R ++ ++  G+  
Sbjct: 89  FALLPTMGGQTALNCALSLRKLGTLEKFDVEMIGATADAIDKAEDRERFREAMTKIGLET 148

Query: 108 CPSILVNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S  V      + +   I  P +I+P       G  +          +      +   +
Sbjct: 149 PRSRQVKNLSDALRALSEIGFPALIRPSFTMGGTGGGIAYTKPEFIEIVESGIDASPTSE 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +F    +      +          +   
Sbjct: 209 VLIEESILGWKEYEMEVVRDKKDNCIIVCSIENFDPMGVHTGDSITVAPALTLTDKEYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G S   F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDASLAVLREIGVETGGSNVQFAVNPEDGRLVVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKVAAKL 331



 Score = 38.7 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             + P  +   +  E++R        +   G+    F     + +++ LE+N +   T  
Sbjct: 830 CSLPPHSLDAAMITELERQTRELALGLDVVGLMNVQFAI--KNGEIYVLEVNPRASRT-- 885

Query: 272 SIFPEMAAYAGYSFRELLLWM 292
              P +A   G    ++   +
Sbjct: 886 --VPFVAKVVGTPVAKIAARL 904


>gi|291239623|ref|XP_002739722.1| PREDICTED: acetyl-Coenzyme A carboxylase alpha-like [Saccoglossus
           kowalevskii]
          Length = 1307

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 70/235 (29%), Gaps = 19/235 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            +  I         L             G+     +V     +  +P++ S +       
Sbjct: 151 NIVFIGPPEKAMWAL-------------GDKIASSIVAQSAGIPTLPWSGSDLKIKWDEN 197

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           D    + V     +     +      + S   I  P +IK  +GG   GI  ++  +   
Sbjct: 198 DIENKEIVTVPDDLYKKGCVNSIEEGLQSAQQIGFPVMIKASEGGGGKGIRKVENQEDFA 257

Query: 152 LDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               Q  S   G  + I +       L   V+ D   +   +            +     
Sbjct: 258 NAFRQVQSEIPGSPIFIMKLAKSARHLEVQVLADKYGNAVSLFGRDCSIQ----RRHQKI 313

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                      +I++E+++ A    + +G       ++L+       ++LE+N +
Sbjct: 314 MEEAPVTVADAEIFREMEQAAVKLAKMVGYISAGTVEYLYSEAEG-FYFLELNPR 367


>gi|145601444|ref|XP_366100.2| hypothetical protein MGG_10320 [Magnaporthe oryzae 70-15]
 gi|145009511|gb|EDJ94178.1| hypothetical protein MGG_10320 [Magnaporthe oryzae 70-15]
          Length = 739

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/275 (16%), Positives = 87/275 (31%), Gaps = 41/275 (14%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D DR   L    L P +A +  +G   E+     +     + +      A A   DK R
Sbjct: 110 LDGDRISRLAADKLGPGVALHPGYGFLSENAAFARLCADRGVNFVGPPASAMADMGDKAR 169

Query: 96  SKQVVSSCGVPVCPSILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK ++S+ GVP  P          F  +    I  P ++K L+   +        D  I 
Sbjct: 170 SKHIMSAAGVPCVPGYHGEEQSAAFLAEKAAEIEYPVLLKSLRSARAEARASFGPDGEIM 229

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L              + +       +   V  D       +            +      
Sbjct: 230 L--------------VEKYITRPRHVEVQVFADRHGGCVALGERDCSIQ----RRHQKVI 271

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
                  +  ++ +++   A  A  A+G  G    +F+ D  + + +++E+N +      
Sbjct: 272 EESPAPGLSEELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNTR------ 325

Query: 272 SIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                   +       G    +L+ W +  A+  R
Sbjct: 326 ----LQVEHPVSEMVTG---TDLVEWQLRVAAGER 353


>gi|221065163|ref|ZP_03541268.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           KF-1]
 gi|220710186|gb|EED65554.1| acetyl-CoA carboxylase, biotin carboxylase [Comamonas testosteroni
           KF-1]
          Length = 452

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + +     + +    + +   +  
Sbjct: 149 AKTIGYPVIIKASGGGGGRGMRVVHTEAALINAVQMTKAEAGAAFGNPAVYMEKYLQNPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            K         +P ++   I +        A 
Sbjct: 209 HVEIQVLADTHKNAVYLGERDCSMQRRHQKVIEEAPAPGIPRRLIEKIGE----RCAAAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG RG    +FL+   + + +++E+N +
Sbjct: 265 KKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|186477378|ref|YP_001858848.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           phymatum STM815]
 gi|184193837|gb|ACC71802.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia phymatum
           STM815]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 78/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 20  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 79

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 80  DAEAIHPGYGFLSENADFAERVEQSGFVFIGPRPDTIRMMGDKVTAKQTMIKTGVPCVPG 139

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     I  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 140 SEGALPEDPKEIVKIARSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 199

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              + Y++        +    L  +             ++          P   I   + 
Sbjct: 200 GNPQVYMEKYLENPRHIEIQVLADSFKNALWLGERDCSMQRRHQKVIEEAPAPGIARRLI 259

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 260 ERIGDRCADACKKMGYLGAGTFEFLY--ENGEFYFIEMNTR 298


>gi|145588397|ref|YP_001154994.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046803|gb|ABP33430.1| acetyl-CoA carboxylase, biotin carboxylase [Polynucleobacter
           necessarius subsp. asymbioticus QLW-P1DMWA-1]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +            L  +                          
Sbjct: 14  ALRIQRACRELGIKTVVVYSTADKEAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +      +  L  DK+ +K+ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFAFIGPTAASIRLMGDKVSAKRAMIKAGVPCVPG 133

Query: 111 I-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  + +   +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPDNPKEIIATAKKVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVNMTKEEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
              E Y++        +    L  T             ++          P   I   + 
Sbjct: 194 GNPEVYMEKFLEKPRHVEIQILADTHGNAIWLGERDCSMQRRHQKVIEEAPAPGIDRRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++      A + IG RG    +FL+   + + F++E+N +
Sbjct: 254 AKIGERCAEACRKIGYRGAGTFEFLY--ENNEFFFIEMNTR 292


>gi|238794623|ref|ZP_04638229.1| Biotin carboxylase [Yersinia intermedia ATCC 29909]
 gi|238726012|gb|EEQ17560.1| Biotin carboxylase [Yersinia intermedia ATCC 29909]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEVQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SELRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|302422706|ref|XP_003009183.1| pyrABCN [Verticillium albo-atrum VaMs.102]
 gi|261352329|gb|EEY14757.1| pyrABCN [Verticillium albo-atrum VaMs.102]
          Length = 2203

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ +  PD  + 
Sbjct: 442 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIQYEHPDAIYV 501

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 502 TFGGQTALSVGIQLKDEFEALGVKVLGTPIDTIITTEDRELFARSMDSIGEKCAKSASAC 561

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 562 TVDEAMVAVKGIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQVLIERSM 619

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 620 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 678

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 679 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 728


>gi|222112118|ref|YP_002554382.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax ebreus TPSY]
 gi|221731562|gb|ACM34382.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax ebreus TPSY]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFQFIGPTPDSIRMMGDKVSAKQAMIRAGVPCVPGSDGELPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PVQIRRIAKSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAAFGNPAVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP  + +++     
Sbjct: 202 KFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRKLIEKIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 AACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|116627302|ref|YP_819921.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           thermophilus LMD-9]
 gi|116100579|gb|ABJ65725.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Streptococcus thermophilus
           LMD-9]
          Length = 456

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I       S+  +LA            D   N              
Sbjct: 17  IIRAARELGIQTVAIYSEADKDSLHTMLADEAICIGPAKSTDSYLNMNRVLSAAIVTEAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATLCEEMNIKFIGPSGEIMDKMGDKINARAEMIRANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++  + +  P ++K   GG   GI  +   + +      +S      + +G 
Sbjct: 137 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVNTKEELAPAFESASQEAKVSFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRDEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+        +FL D  S + +++E+N +
Sbjct: 257 S----AAVRAAKAVNYENAGTIEFLLDEKSGQFYFMEMNTR 293


>gi|257452284|ref|ZP_05617583.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium sp.
           3_1_5R]
 gi|317058827|ref|ZP_07923312.1| biotin carboxylase [Fusobacterium sp. 3_1_5R]
 gi|313684503|gb|EFS21338.1| biotin carboxylase [Fusobacterium sp. 3_1_5R]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+     I    EI +    I       DK  ++    +  VPV     + +   
Sbjct: 82  YGFLSENAKFAEICMSHEITFIGPRIDCIQNMGDKATARATAIANEVPVSRGTGIVQDVE 141

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                 +  I  P +IK   GG   G+ +   ++ +  +++ +       + +GD  + +
Sbjct: 142 EAVKRVEEEIQYPVMIKATAGGGGKGMRIAFSEEELRENMVAAQQEALAAFGNGDVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+GD   +V  ++           K         +P      I  E+  
Sbjct: 202 YIEEPRHVEVQVLGDNYGNVIHLSTRDCSIQRRHQKMIEEAPAFSVPF----KIQNEMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +AI        +FL D  + + +++E+N +
Sbjct: 258 AAVRLAKAIQYNSAGTLEFLVD-KNNQYYFMEMNTR 292


>gi|224118754|ref|XP_002331438.1| predicted protein [Populus trichocarpa]
 gi|290463113|sp|B9N843|ACCC2_POPTR RecName: Full=Biotin carboxylase 2, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A 2; Short=ACC;
           Flags: Precursor
 gi|222873652|gb|EEF10783.1| predicted protein [Populus trichocarpa]
          Length = 526

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ +    VP  P     +   
Sbjct: 147 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKKANVPTVPGSDGLLQST 206

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +     I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 207 EEAVKLASEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 266

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 267 YVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 322

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 323 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 357


>gi|170760793|ref|YP_001788939.1| biotin carboxylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169407782|gb|ACA56193.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A3 str. Loch Maree]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 88/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPFSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIADEIGYPVVVKASAGGGGRGIRIVYSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIVHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+G +     +FL D      +++E+N +
Sbjct: 257 DVATKAAKAVGYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|218526260|gb|ACK86537.1| carbamoyl-phosphate synthase [Stenobiella muellerorum]
          Length = 722

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +PD    
Sbjct: 132 SGSQAIKALKEENIQTVLMNPNIATVQTSKGLADKVYFLPLIPEYVEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V+     V    +
Sbjct: 192 TFGGQTALNCGVELEQAGVFKKYGVRILGTPIKSIIETEDRKIFAERVNEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++  +I  P + +       LG         +   +L S +  H +QL+I++
Sbjct: 252 VYSVQEALNAADVIGYPVMARAAFSLGGLGSGFANNADEL--KILASQALAHSNQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLRGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AIRVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|158451311|gb|ABW39016.1| putative CAD trifunctional protein [Syngria druidaria]
          Length = 732

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 435 TFGGQTALNCGVELQRAKIFEKYNVSVLGTPIQSIVDTEDRKIFAEKIHAIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P + +       LG      +  +   + Q+   +H DQL+I++
Sbjct: 495 VTSVEEALSAANQIGYPIMARSAFSLGGLGSGFANNEDELRTLVHQAL--SHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|170078726|ref|YP_001735364.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. PCC 7002]
 gi|169886395|gb|ACB00109.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp. PCC
           7002]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 19/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++   + +P     +             Y++       
Sbjct: 149 AQQIGYPVMIKATAGGGGRGMRLVPSAEELPRLYRAAQGEAEAAFGNGGVYIEKFIERPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P+ I    +  ++ + A  A ++I 
Sbjct: 209 HIEFQILADQYGNVIHLGERDCSIQRRHQKLLEEAPSAILTPRLRDKMGKAAVKAAKSID 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +FL D  +   +++E+N       P         EM    G    +L+   ++
Sbjct: 269 YVGAGTVEFLVD-KNGDFYFMEMNTRIQVEHP-------VTEM--VTGL---DLIAEQIK 315

Query: 295 DASCLR 300
            A   R
Sbjct: 316 VAQGDR 321


>gi|62181888|ref|YP_218305.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|62129521|gb|AAX67224.1| acetyl CoA carboxylase, biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str.
           SC-B67]
 gi|322716378|gb|EFZ07949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Choleraesuis str. A50]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGEHCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|121727064|ref|ZP_01680255.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae V52]
 gi|121630575|gb|EAX62965.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae V52]
          Length = 408

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ V++ +  +   +  + +           Y++      
Sbjct: 109 HAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNNDMVYMEKFLENP 168

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAI 238
             +    +   +            ++          PA    +  ++        A   I
Sbjct: 169 RHVEVQVIADGQGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEI 228

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G RG    +FL+   + + +++E+N +
Sbjct: 229 GYRGAGTFEFLY--ENGEFYFIEMNTR 253


>gi|262372702|ref|ZP_06065981.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
 gi|262312727|gb|EEY93812.1| acetyl-CoA carboxylase, biotin carboxylase [Acinetobacter junii
           SH205]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+     I+E     +         L  +K   + + +      VP C   +   
Sbjct: 82  YGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDHAVTIH 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQY 171
             +     I  P ++K   GG   G+ ++++  ++          +  W   D + +E++
Sbjct: 142 NALAEAREIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTVYMERF 201

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                 +   V+GD +     +            K         LP +   DI +     
Sbjct: 202 LQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQARADILE----A 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A + +  RG    +FLF     + F++E+N +
Sbjct: 258 CVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|194245506|gb|ACF35362.1| carbamoylphosphate synthetase [Dynastes granti]
          Length = 671

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIKAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     + E   +    + I A   + D+    + +      V    +
Sbjct: 131 TFGGQTALNCGVELQRSGVFEKYNVKVLGTPIEAIIDTEDRKIFSERIAGIGEKVAPSLA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
               +  +D+   +  P + +       LG       + +   LL + +  H  QL+I++
Sbjct: 191 AYSVQEALDAAEKLGYPVMARAAFSLGGLGSGFADNKEEL--KLLANQALAHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNREYNMLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AIKVIRHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|125624569|ref|YP_001033052.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|124493377|emb|CAL98351.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris MG1363]
 gi|300071362|gb|ADJ60762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris NZ9000]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKADVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGD 164
            +      +     I  P ++K   GG   GI  +   + +      + +       +G 
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD+  +V  +            K    + +  +   +  +I 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVLEESPSVAIGHTLRNEIT 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q +        +FL D  S K +++E+N +
Sbjct: 257 A----AAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNTR 293


>gi|119598745|gb|EAW78339.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha), isoform CRA_a
           [Homo sapiens]
          Length = 434

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 27/191 (14%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ +Q     L  +       +N    L+ +     
Sbjct: 156 HARRIGYPVMIKAVRGGGGKGMRIVRSEQEFQEQLESARREAKKSFNDDAMLIEKFVDTP 215

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ K++   A  A
Sbjct: 216 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGIKSEVRKKLGEAAVRA 271

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELL 289
            +A+   G    +F+ D       ++E+N       P         EM      +  +L+
Sbjct: 272 AKAVNYVGAGTVEFIMDSKHN-FCFMEMNTRLQVEHP-------VTEM-----ITGTDLV 318

Query: 290 LWMVEDASCLR 300
            W +  A+  +
Sbjct: 319 EWQLRIAAGEK 329


>gi|269218793|ref|ZP_06162647.1| acetyl-CoA carboxylase alpha chain [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269211904|gb|EEZ78244.1| acetyl-CoA carboxylase alpha chain [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 603

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 25/181 (13%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V K   GG   GI V++ D  + +          G   +         +      D+
Sbjct: 153 FPIVTKKADGGGGRGITVMESDSDLDVFFTAHGHHAEG-FFVERFIRTARHVETQCARDS 211

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             +   ++           K         LP      + + +   +     A+G  G+  
Sbjct: 212 FGNFAVVSTRDCSVQRRNQKLIEEAPAPALPRG----VEETLVDWSRRLFDAVGYEGLGT 267

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCL 299
            +FL      +V +LE+N +              +       G    +L+   +  A+  
Sbjct: 268 CEFLV-EADGRVNFLEVNPR----------LQVEHTVSEEVTGL---DLVEQQIRIAAGK 313

Query: 300 R 300
           R
Sbjct: 314 R 314


>gi|257465916|ref|ZP_05630227.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|315917072|ref|ZP_07913312.1| biotin carboxylase [Fusobacterium gonidiaformans ATCC 25563]
 gi|313690947|gb|EFS27782.1| biotin carboxylase [Fusobacterium gonidiaformans ATCC 25563]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT- 117
           +G   E+     I    EI +    I       DK  ++    +  VPV     + +   
Sbjct: 82  YGFLSENAKFAEICMSHEITFIGPRIDCIQNMGDKATARATAIANEVPVSRGTGIVQDVE 141

Query: 118 ---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                 +  I  P +IK   GG   G+ +   ++ +  +++ +       + +GD  + +
Sbjct: 142 EAVKRVEEEIQYPVMIKATAGGGGKGMRIAFSEEELRENMVAAQQEALAAFGNGDVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+GD   +V  ++           K         +P      I  E+  
Sbjct: 202 YIEEPRHVEVQVLGDNYGNVIHLSTRDCSIQRRHQKMIEEAPAFSVPF----KIQNEMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +AI        +FL D  + + +++E+N +
Sbjct: 258 AAVRLAKAIQYNSAGTLEFLVD-KNNQYYFMEMNTR 292


>gi|256847297|ref|ZP_05552743.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           coleohominis 101-4-CHN]
 gi|256715961|gb|EEU30936.1| carbamoyl-phosphate synthase large subunit [Lactobacillus
           coleohominis 101-4-CHN]
          Length = 834

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/301 (14%), Positives = 101/301 (33%), Gaps = 35/301 (11%)

Query: 21  ACASALEDAGFKVSQIDVDR----------------------SVGLVLAHLKPDLAFNVL 58
                L+ AGF+   +D +                       S+  V+    P L    L
Sbjct: 30  EVGKTLQKAGFETVLVDDNPFSTSLDTTSAITQRYILPLTAQSIIDVINQRHPQLIVPTL 89

Query: 59  HGNFG----EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPVCPSIL 112
            G       +      IL   +I              + M   Q +           ++ 
Sbjct: 90  GGRRAFEILQTVGESGILTENDIRIAGVPEATVRQVNNPMLLNQTLRRLQAPTKKIATVD 149

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +  ++    +  P V++ +   S     +++  + +   + +    +   Q++++Q +
Sbjct: 150 NYQAALEMARAVGFPVVVRAVFPKSLRMRRIVQDSEELRTAVSRGIQMSRSGQVMVQQSL 209

Query: 173 DG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            G  E+   VM D+S ++  + + +           S+         +     ++++  A
Sbjct: 210 AGLKEIEVMVMRDSSGNMMCLGIAEDIDPIGIHAGDSITVLPAQ--TLLDRNIQDMRNTA 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           F   + +   GI+   F FDP   + + ++ N  P    +S F E+A   GY    ++  
Sbjct: 268 FAITRKLRIVGINHVQFAFDPHQNRYYVIK-N-SPYFDRISTFTEIA--TGYPVSRVVGH 323

Query: 292 M 292
           +
Sbjct: 324 L 324


>gi|154253213|ref|YP_001414037.1| carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
 gi|154157163|gb|ABS64380.1| Carbamoyl-phosphate synthase L chain ATP-binding [Parvibaculum
           lavamentivorans DS-1]
          Length = 671

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 54/183 (29%), Gaps = 21/183 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   G+ +   ++ +      S S           +++       
Sbjct: 148 ANEIGYPVMIKASAGGGGKGMRIAWSEKEVADGFTSSMSEAKSSFGDDRVFIEKFVTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +       P+    +   K +   +    +A+ 
Sbjct: 208 HIEIQVLGDKHGNVIYVMERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQSVALAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+ D   R  ++LE+N +              +       G    +L+  M+
Sbjct: 268 YESAGTVEFIVD-KDRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEQMI 313

Query: 294 EDA 296
             A
Sbjct: 314 RVA 316


>gi|327403182|ref|YP_004344020.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Fluviicola taffensis DSM 16823]
 gi|327318690|gb|AEA43182.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Fluviicola taffensis DSM 16823]
          Length = 388

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/275 (15%), Positives = 85/275 (30%), Gaps = 33/275 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK    AL+  G  V  +D   +                    +  ++A  +PDL    +
Sbjct: 14  GKELVIALQRLGQTVIAVDSYENAPAMQVADSFEVINMLDAVSLDAIVAKHQPDLIVPEI 73

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E       + +  IP   +          +  + + +                  
Sbjct: 74  EAIRTERFYEYEKMGIQVIPSAKAANFTMNRKAIRDLAAKDLGVKT-ANYLYAKTGEEFE 132

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE 176
            +   I  P V+KPL   S  G  VI+  + I      +   + GD  ++++E+++    
Sbjct: 133 KAVLDIGIPCVVKPLMSSSGKGQSVIRSKEEISKAWTYAIEGSRGDLKEVIVEEFIPFDY 192

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +    +   T    P                    P  +  +  KE Q +A    +
Sbjct: 193 EITLLTVTQNNGETLFCAPIGHRQE-----RGDYQESWQPMPMNSEHLKEAQEMAAKVTK 247

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A+G  G+   +F         ++ E++ +P   GM
Sbjct: 248 ALGGSGLWGVEFFITKEG--AYFSELSPRPHDTGM 280


>gi|312170832|emb|CBX79092.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           amylovora ATCC BAA-2158]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPPPSVKSYLNIPALISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSEKDLEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGDRCSKACIDIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|330935443|ref|XP_003304970.1| hypothetical protein PTT_17704 [Pyrenophora teres f. teres 0-1]
 gi|311318160|gb|EFQ86907.1| hypothetical protein PTT_17704 [Pyrenophora teres f. teres 0-1]
          Length = 1840

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 84/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIQKERPDGIYV 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 524 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAN 583

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      D  +    L + ++    Q+LIE+ +
Sbjct: 584 SVEEAMRVVKDIGFPVIVRAAYALGGLGSGFANNDAELLD--LCNKAFAASPQVLIERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 642 KGW-KEIEYEVVRDSRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDADYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|146343635|ref|YP_001208683.1| putative biotin carboxylase [Bradyrhizobium sp. ORS278]
 gi|146196441|emb|CAL80468.1| putative biotin carboxylase [Bradyrhizobium sp. ORS278]
          Length = 651

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++ +  + P  L  + S            ++   
Sbjct: 148 MLREAKRIGFPVMIKAVAGGGGRGMRLVNEAYAFPDLLRSARSEAAAAFGDGTVILEKAI 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
                +       +             ++          P+  +  ++   +  +A  A 
Sbjct: 208 ANPRHIEIQVFGDSHGNAVHLGERDCSVQRRHQKLIEEAPSPAVGPELRARMGAVAVQAV 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +FL D    + +++E+N +
Sbjct: 268 KALGYEGAGTLEFLLDG-DGRFYFMEMNTR 296


>gi|78213772|ref|YP_382551.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           sp. CC9605]
 gi|78198231|gb|ABB35996.1| acetyl-CoA carboxylase, biotin carboxylase [Synechococcus sp.
           CC9605]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ ++     +          +    G+  L  +       
Sbjct: 149 AEEMGYPVMIKATAGGGGRGMRLVPDASQLESLYKAAQGEAEAAFGNPGLYLEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        V   +      +             +  D+ + +   A  A ++
Sbjct: 209 HVEVQVLADRHG--NVVHLGERDCSIQRRHQKLLEEAPSPALDPDLRRRMGEAAVAAARS 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I   G    +FL D      +++E+N +
Sbjct: 267 INYEGAGTVEFLLDRSGG-FYFMEMNTR 293


>gi|194337659|ref|YP_002019453.1| acetyl-CoA carboxylase, biotin carboxylase [Pelodictyon
           phaeoclathratiforme BU-1]
 gi|194310136|gb|ACF44836.1| acetyl-CoA carboxylase, biotin carboxylase [Pelodictyon
           phaeoclathratiforme BU-1]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ ++  +   L  + S           Y++       
Sbjct: 148 AKKTGYPVIIKPTAGGGGKGMRVVTEESQLDKALNTARSEAEQAFGNSGVYIEKYLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+ +  + + K++   A  A +AI 
Sbjct: 208 HVEIQILSDQHGNTIHLGERDCTVQRRHQKLIEETPSPVVDEALRKKMGDAAVAAARAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDRHRD-FYFMEMNTR 292


>gi|302759505|ref|XP_002963175.1| hypothetical protein SELMODRAFT_438375 [Selaginella moellendorffii]
 gi|300168443|gb|EFJ35046.1| hypothetical protein SELMODRAFT_438375 [Selaginella moellendorffii]
          Length = 499

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/186 (16%), Positives = 62/186 (33%), Gaps = 27/186 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            H I  P +IK   GG   G+ +  + +     L Q+ S     + +    L     +  
Sbjct: 196 AHEIGFPVMIKATAGGGGRGMRLANEPEEFVKLLQQARSEAGAAFGNDGVYLERYIKNPR 255

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            + +           +  ++ K +   A  A 
Sbjct: 256 HIEFQVLADKHGNCIHLGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGDAAVAAA 311

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
            +IG  G+   +FL D  S   +++E+N       P +T +            S  +L+ 
Sbjct: 312 ASIGYVGVGTIEFLLDE-SGAFYFMEMNTRIQVEHP-VTEL-----------ISSTDLIE 358

Query: 291 WMVEDA 296
             +  A
Sbjct: 359 EQIRVA 364


>gi|217423125|ref|ZP_03454627.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
 gi|217394033|gb|EEC34053.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 576]
          Length = 484

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 163 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 222

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 223 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 283 VGYRGAGTLEYLFDDARGEFYFIEMNTR 310


>gi|187930964|ref|YP_001890948.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. mediasiatica FSC147]
 gi|187711873|gb|ACD30170.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. mediasiatica FSC147]
          Length = 386

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/249 (15%), Positives = 78/249 (31%), Gaps = 24/249 (9%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGD------QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            I      + + + G       +  I+   +   LT       S       + K   Y +
Sbjct: 166 EIKKAWDYAQNGSRGHAKGVIVEQFIDFDYEIKLLTVRHKDGTSFCDPIGHIQKDGDYRF 225

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                        P  +P     + Q +A     A+G  G+   +        +VF+ E+
Sbjct: 226 S----------WQPHTMPDTALAKSQEIAKEITNALGGYGVFGVELFI--KGDEVFFNEV 273

Query: 263 NVQP---GM 268
           + +P   GM
Sbjct: 274 SPRPHDTGM 282


>gi|121597735|ref|YP_990495.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei SAVP1]
 gi|238561871|ref|ZP_04609785.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|251766809|ref|ZP_02265038.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
 gi|254203419|ref|ZP_04909780.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|254205299|ref|ZP_04911652.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|121225533|gb|ABM49064.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei SAVP1]
 gi|147745658|gb|EDK52737.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           FMH]
 gi|147754885|gb|EDK61949.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           JHU]
 gi|238523683|gb|EEP87120.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei GB8 horse 4]
 gi|243064743|gb|EES46929.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei PRL-20]
          Length = 484

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 163 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 222

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 223 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 283 VGYRGAGTLEYLFDDARGEFYFIEMNTR 310


>gi|16077292|ref|NP_388105.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221308036|ref|ZP_03589883.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|221312359|ref|ZP_03594164.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. NCIB 3610]
 gi|221317292|ref|ZP_03598586.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. JH642]
 gi|221321556|ref|ZP_03602850.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. SMY]
 gi|3915837|sp|P39771|PURT_BACSU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|2632509|emb|CAB12017.1| phosphoribosylglycinamide formyltransferase 2 [Bacillus subtilis
           subsp. subtilis str. 168]
 gi|3599645|dbj|BAA33120.1| PHOSPHORIBOSYLGLYCINAMIDE FORMYLTRANSFERASE 2 [Bacillus subtilis]
          Length = 384

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 71/237 (29%), Gaps = 10/237 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + V  +D    +  ++    PDL    +     ++ L         IP   +  L     
Sbjct: 49  YVVDMLDP-EQIRTIIEKENPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDRE 107

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             +  + + +                 + +   I  P V+KPL   S  G  V + +  +
Sbjct: 108 GIRRLAAETLGLAT-AGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSVCRSEADL 166

Query: 151 PLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +          +I +     E    ++   +++ T    P         +    
Sbjct: 167 ESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHV-----QKDGD 221

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P  +     +E + +A      +G  G+   +        +V++ E++ +P
Sbjct: 222 YIESWQPHDMTEQQIEEAKHIAKTITDELGGYGLFGVELFL--AKDRVYFSEVSPRP 276


>gi|87301340|ref|ZP_01084181.1| acetyl-CoA carboxylase [Synechococcus sp. WH 5701]
 gi|87284308|gb|EAQ76261.1| acetyl-CoA carboxylase [Synechococcus sp. WH 5701]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/288 (14%), Positives = 87/288 (30%), Gaps = 42/288 (14%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID--VDRS-VGLVLAHLK---------------PDLA 54
           E+SL        +  + G     +   VDR+ + + LA                  P++ 
Sbjct: 13  EISLR----ILRSCRELGISTVAVYSTVDRNALHVQLADEAVCVGEAPSSKSYLNIPNII 68

Query: 55  FNVL----------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCG 104
              +          +G   E+     I     + +      A     DK  +K  +   G
Sbjct: 69  AAAISRGADAIHPGYGFLAENDRFAEICAAHGLTFVGPSPEAIRAMGDKSTAKATMQRVG 128

Query: 105 VPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQS 157
           VP  P     +   +        +  P +IK   GG   G+ ++++ + +          
Sbjct: 129 VPTIPGSEGLLEDAQEASVLAARMGFPVMIKATAGGGGRGMRLVQEPEQLEALFKAAQGE 188

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +    G+  L  +          V   A        V   +      +            
Sbjct: 189 AEAAFGNPGLYMEKFIERPRHVEVQILADRHG--NVVHLGERDCSIQRRHQKLLEEAPSP 246

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  ++ + +   A  A ++I   G    +FL D  S   +++E+N +
Sbjct: 247 ALDPELRRRMGEAAVAAARSITYEGAGTVEFLVD-RSGSFYFMEMNTR 293


>gi|53716029|ref|YP_106423.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei ATCC 23344]
 gi|124382540|ref|YP_001024984.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
 gi|126447049|ref|YP_001079330.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|254176253|ref|ZP_04882911.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 10399]
 gi|254356106|ref|ZP_04972383.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           2002721280]
 gi|52421999|gb|AAU45569.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 23344]
 gi|126239903|gb|ABO03015.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10247]
 gi|148025089|gb|EDK83258.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia mallei
           2002721280]
 gi|160697295|gb|EDP87265.1| putative acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           mallei ATCC 10399]
 gi|261826854|gb|ABM99628.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           mallei NCTC 10229]
          Length = 481

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 280 VGYRGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|257463852|ref|ZP_05628239.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium sp. D12]
 gi|317061385|ref|ZP_07925870.1| biotin carboxylase [Fusobacterium sp. D12]
 gi|313687061|gb|EFS23896.1| biotin carboxylase [Fusobacterium sp. D12]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I    +I +    +       DK  ++    +  VPV         V 
Sbjct: 82  YGFLSENAKFAEICMSHDITFIGPRVDCIQNMGDKATARATAIANEVPVSRGTGILQTVE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                 +  I  P +IK   GG   G+ +   ++ +  ++  +       + +GD  + +
Sbjct: 142 EAVKKVEEEIHYPVMIKATAGGGGKGMRIAFSEEELRENMAAAQQEALAAFGNGDVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++GD   +V  ++           K         +P      I  E+  
Sbjct: 202 YIEEPRHVEVQILGDNYGNVIHLSTRDCSIQRRHQKMIEEAPAFSVPF----KIQNEMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +AI        +FL D  + + +++E+N +
Sbjct: 258 AAVRLAKAIQYNSAGTLEFLVD-KNNQYYFMEMNTR 292


>gi|332305775|ref|YP_004433626.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
 gi|332173104|gb|AEE22358.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Glaciecola agarilytica 4H-3-7+YE-5]
          Length = 675

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 73/285 (25%), Gaps = 33/285 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   K          D      +G   E+           I +   
Sbjct: 47  EAIHIGPSPSNQSYLKIEKVLAAAKTTGADAIHPG-YGFLSENAEFAKACADNNIIFVGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRF----TMDSQHLISPPYVIKPLKGGSS 138
            I A      K  +K ++    VP+ P                  +  P ++K   GG  
Sbjct: 106 PIEAIEAMGSKSAAKHIMEQANVPLVPGYHGEDQSGALIKRHADEMGYPVLLKAAAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+  +         L  +              V+        +                
Sbjct: 166 KGMRQVWSADEFDAALAAAKREAMSSFNDDIMLVEKYLTQPRHVEVQVFCDHHGNGVHVF 225

Query: 199 FYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P  K+   +   +   A  A QAI   G    +FL D      
Sbjct: 226 ERDCSVQRRHQKVVEEAPAFKMDPALRAAMGDAALKAAQAINYVGAGTVEFLLD-KDGSF 284

Query: 258 FWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           +++E+N       P         EM      S ++L+ W +  A+
Sbjct: 285 YFMEMNTRLQVEHP-------VSEM-----ISGQDLVEWQLRVAA 317


>gi|331007555|ref|ZP_08330711.1| ATP-grasp enzyme-like protein [gamma proteobacterium IMCC1989]
 gi|330418634|gb|EGG93144.1| ATP-grasp enzyme-like protein [gamma proteobacterium IMCC1989]
          Length = 402

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +               +          Q + +                      +    
Sbjct: 63  DILATAKKFNAKFIIPTVTETQILARFHQELTDAGVHVLLVDENKMFNADNKAWVTHHAK 122

Query: 101 S-SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQ 156
                VP            +    I  P +IK L G    G  ++K  +S+      +L 
Sbjct: 123 KLGVRVPETWFPETINAVAELADTIDYPVIIKALNGKGGEGQAIVKSKKSLVDSYKKILG 182

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S    ++ +I+Q++ G+      + D    V+                  ++      
Sbjct: 183 TVSLKDHERPIIQQFITGVPAGVACLFDNGKLVSHYCFKVLGTLDGVHSVDRIS------ 236

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
                D        +      +   GI+  DFL+D +S K + LEIN +      S+  +
Sbjct: 237 -----DNIPSAIDASINLLSDMRWHGIAEVDFLYDEISGKSYLLEINPRF---WGSV--Q 286

Query: 277 MAAYAGYSFRELLLWMV 293
            A  +G  F    + ++
Sbjct: 287 SAIVSGIDFPAQYMNIL 303


>gi|218526232|gb|ACK86523.1| carbamoyl-phosphate synthase [Oliarces clara]
          Length = 712

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/297 (11%), Positives = 81/297 (27%), Gaps = 37/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 126 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E        + I +   + D+    + ++     V    +
Sbjct: 186 TFGGQTALNCGVELEKAGIFEKYGCKILGTPIQSIIETEDRKMFTEKINEIGEKVAPSAA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-PLDLLQSSSWNHGDQLLIE 169
           +      +++   I  P + +       LG       + +  L +   +  N     + +
Sbjct: 246 VYSVEEALNAAEKIGYPVMARAAFSLGGLGSGFAHNQEQLKCLAIQALAHSNQLIMTITK 305

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            + +          D  + V  +                  S  +         Y  ++ 
Sbjct: 306 GWKEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTL-----SNREYNMLRT 360

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 361 TAINVIRHFGVIGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 413


>gi|24372429|ref|NP_716471.1| acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella oneidensis MR-1]
 gi|24346403|gb|AAN53916.1|AE015528_9 acetyl-CoA carboxylase multifunctional enzyme accADC, carboxyl
            transferase subunit alpha/carboxyl transferase subunit
            beta/biotin carboxylase [Shewanella oneidensis MR-1]
          Length = 1517

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 86/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D       + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGHAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|332016929|gb|EGI57738.1| CAD protein [Acromyrmex echinatior]
          Length = 2231

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/311 (12%), Positives = 92/311 (29%), Gaps = 43/311 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +PD    
Sbjct: 426 SGSQAIKALKEESIQTLLINPNIATVQTSKGMADKVYFLPIIPKYVEQVIRSERPDGVLL 485

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     +     +    + I +   + D+      V   +  V    +
Sbjct: 486 TFGGQTALNCGLELEKNGVFANYNVKILGTPIESIIQTEDRKIFADRVSEINEKVAPSAA 545

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 546 VYSVQEALEAAEKLGYPVMARAAFSLGGLGSGFANTREELRT--LAQQALAHSNQLIIDK 603

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y +++  
Sbjct: 604 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYNKLRTT 662

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    +  G  G     +  +P S + + +E+N +  ++  S        +P     A  
Sbjct: 663 AIKVIKHFGIVGECNIQYALNPFSEEYYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 720

Query: 282 --GYSFRELLL 290
             G    ++  
Sbjct: 721 ALGIPLPDICN 731


>gi|299133767|ref|ZP_07026961.1| acetyl-CoA carboxylase, biotin carboxylase [Afipia sp. 1NLS2]
 gi|298591603|gb|EFI51804.1| acetyl-CoA carboxylase, biotin carboxylase [Afipia sp. 1NLS2]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL   ++ +            DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILAEHDLDFIGPKAEHIRTMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      M     I  P ++K   GG   G+ V + +  + L L  +S+        
Sbjct: 135 DGGVSPGDDAMAIAKKIGFPVLVKAAAGGGGRGMKVAQTEADLMLALSTASNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I       
Sbjct: 195 GSVYLEKYLGKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQKVWEESPSPIISPAARHR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A + +   G+   +FL+     + +++E+N +
Sbjct: 255 IGEICANAMREMKYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|226954124|ref|ZP_03824588.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ATCC 27244]
 gi|294650267|ref|ZP_06727635.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           haemolyticus ATCC 19194]
 gi|226835165|gb|EEH67548.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter sp. ATCC 27244]
 gi|292823797|gb|EFF82632.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acinetobacter
           haemolyticus ATCC 19194]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 73/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+     I+E     +         L  +K   + + +      VP C   +   
Sbjct: 82  YGFLSENAEFAEIVENSGFIFIGPRPEHIRLMGNKVSAIIAMKKAGVPTVPGCDHAVTIH 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQY 171
             +     I  P ++K   GG   G+ ++++  ++          +  W   D + +E++
Sbjct: 142 NALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTVYMERF 201

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                 +   V+GD +     +            K         LP +   DI +     
Sbjct: 202 LQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQARADILE----A 257

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A + +  RG    +FLF     + F++E+N +
Sbjct: 258 CVNACKLMQYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|167722153|ref|ZP_02405389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei DM98]
          Length = 481

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 280 VGYRGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|134280790|ref|ZP_01767500.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
 gi|134247812|gb|EBA47896.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 305]
          Length = 481

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    + +++E+N +
Sbjct: 280 VGYRGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|169847015|ref|XP_001830220.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Coprinopsis cinerea okayama7#130]
 gi|116508696|gb|EAU91591.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Coprinopsis cinerea okayama7#130]
          Length = 1157

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/302 (15%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  VL   +PD    
Sbjct: 101 SGSQALKALNEEGVSAVLINPNIATWQTSHQLASEVYFLPITADYVAYVLEKERPDGILL 160

Query: 57  VLHGN------FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G          D +       +++  T    L  +   D            V    +
Sbjct: 161 TFGGQSALNVGIALDRMGILDRLGVKVLGTPIRTLEVSEDRDLFVQALKEIDIPVATSTA 220

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L + S +   Q+LIE+
Sbjct: 221 VSSVPAALEAAEQIGYPVILRSAFTLGGLGSGFANNPEELSN--LAAKSLSLSPQVLIER 278

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +P D Y  ++  
Sbjct: 279 SMKGW-KELEYEVVRDAADNTIICCNMENFDPLGTHTGDSIVVAPSQTLPDDEYHMLRSA 337

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA----GYSFR 286
           A  A + +G  G     +  +P SR+   +E+N +   +  + +P     A    GY+  
Sbjct: 338 ALKAIRHLGVVGECNIQYALNPTSREYCVIEVNARALASKATGYPLAYTAAKIALGYTLP 397

Query: 287 EL 288
           EL
Sbjct: 398 EL 399


>gi|299530669|ref|ZP_07044084.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni S44]
 gi|298721185|gb|EFI62127.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni S44]
          Length = 405

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 39/280 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++  +KPDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDAAQLKALIEEVKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---------QVVSSCGVPVCP 109
                    +   LE   +        A+ L+MD+   +                     
Sbjct: 84  E---AIATPMLEELEAAGVITCIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLA 140

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       D Q  I  P V+KP+   S  G   I     +        +   G      
Sbjct: 141 ELQAAIDGSDGQPAIGYPCVVKPVMSSSGKGQSKIDGPADVAKA--WDYAMAGGRVAKGR 198

Query: 170 QYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             V+G    +     +   +                 ++ +        P  +     ++
Sbjct: 199 VIVEGFIDFDYEITQLTVRAKGADGQIETHFCDPVGHIQQAGDYVESWQPHPMHPAALEK 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +++A      +G  G+   +        +V++ E++ +P
Sbjct: 259 SRQIAKAVTDDLGGLGLFGVELFV--KGEQVWFSEVSPRP 296


>gi|281491274|ref|YP_003353254.1| acetyl-CoA carboxylase biotin carboxylase [Lactococcus lactis
           subsp. lactis KF147]
 gi|281375015|gb|ADA64533.1| Acetyl-CoA carboxylase, biotin carboxylase [Lactococcus lactis
           subsp. lactis KF147]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGD 164
            +      +     I  P ++K   GG   GI  +   + +      + +       +G 
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD+  +V  +            K    + +  +   +  +I 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVLEESPSVAIGHTLRQEIT 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q +        +FL D  S K +++E+N +
Sbjct: 257 A----AAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNTR 293


>gi|226313683|ref|YP_002773577.1| pyruvate carboxylase [Brevibacillus brevis NBRC 100599]
 gi|226096631|dbj|BAH45073.1| pyruvate carboxylase [Brevibacillus brevis NBRC 100599]
          Length = 1148

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/235 (13%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  S+  +      D      +G   E+       +   I +            DK+ 
Sbjct: 66  LDI-ESIIEIAKRNDIDAIHPG-YGFLAENADFAKRCQEEGIIFIGPSPELIDKFGDKVE 123

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++++    G+PV P       T+            P +IK + GG   G+ +++  + + 
Sbjct: 124 ARRLAIEAGIPVIPGTPEPIETLQEALLFAKEYGYPIIIKGVSGGGGRGMRIVRSQEELQ 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L ++ S         + Y++        +    L      +         ++      
Sbjct: 184 DSLDRARSEARSSFGNAKVYLERYLEQPKHIEVQILGDNHGNIVHLYERDCSVQRRHQKV 243

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P+      + +++ + A    +  G       +FL  P  ++ +++E+N +
Sbjct: 244 VEVAPSLSLDDKLREDICQAALTLMKKAGYSNAGTVEFLLTP-DKRFYFIEVNPR 297


>gi|190348019|gb|EDK40398.2| hypothetical protein PGUG_04496 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 964

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 6/142 (4%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMG 183
           ++K   GG  +G+ V  ++  +     +  S     +N+    L +    G  +   V G
Sbjct: 1   MLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFLEKYVECGRHIEVQVFG 60

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +    V      +        +     +           + K++   A     ++  +  
Sbjct: 61  NGQGYVRAFGERECSIQR-RHQKVIEEAPSPFVENGRTSLRKQLVTCAAHLAASVKYKSA 119

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
              +FL D  +   ++LE+N +
Sbjct: 120 GTVEFLVDDETGSFYFLEMNTR 141


>gi|221068678|ref|ZP_03544783.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni KF-1]
 gi|220713701|gb|EED69069.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni KF-1]
          Length = 405

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/280 (13%), Positives = 79/280 (28%), Gaps = 39/280 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++  +KPDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEEVKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---------QVVSSCGVPVCP 109
                    +   LE   +        A+ L+MD+   +                     
Sbjct: 84  E---AIATPMLEELEAAGVITCIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLA 140

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       D Q  I  P V+KP+   S  G   I     +        +   G      
Sbjct: 141 ELQAAIDGSDGQPAIGYPCVVKPVMSSSGKGQSKIDGPADVAKA--WDYAMAGGRVAKGR 198

Query: 170 QYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             V+G    +     +   +                 ++ +        P  +     ++
Sbjct: 199 VIVEGFIDFDYEITQLTVRAKGADAQIETHFCDPVGHIQQAGDYVESWQPHPMHPAALEK 258

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +++A      +G  G+   +        +V++ E++ +P
Sbjct: 259 SRQIAKAVTDDLGGLGLFGVELFV--KGEQVWFSEVSPRP 296


>gi|332523166|ref|ZP_08399418.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           porcinus str. Jelinkova 176]
 gi|332314430|gb|EGJ27415.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           porcinus str. Jelinkova 176]
          Length = 457

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 8/217 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPAATIMDKMGDKINARAEMQKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +   +    +  P ++K   GG   GI  +     +      +S           
Sbjct: 137 EVFSVQEAQEVADKVGYPIMLKASAGGGGKGIRKVTTASDLKEAFESASQEALSAFGNGA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            YV+ +      +    L  +   V         L+ ++       P+    +  ++   
Sbjct: 197 MYVEKVIYPARHIEVQILGDSYGHVIHLGERDCSLQRNNQKVLEESPSIAIGETLRKEMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A QA+G       +FL D  S + +++E+N +
Sbjct: 257 DAAVKAAQAVGYENAGTIEFLLDEKSGQFYFMEMNTR 293


>gi|329997549|ref|ZP_08302825.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
 gi|328539009|gb|EGF65055.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Klebsiella sp.
           MS 92-3]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVPAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|296271675|ref|YP_003654306.1| acetyl-CoA carboxylase biotin carboxylase [Arcobacter nitrofigilis
           DSM 7299]
 gi|296095850|gb|ADG91800.1| acetyl-CoA carboxylase, biotin carboxylase [Arcobacter nitrofigilis
           DSM 7299]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/260 (16%), Positives = 81/260 (31%), Gaps = 34/260 (13%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I  L  I +    +       DK ++K+ +   GVPV P  
Sbjct: 78  DAIFPG-YGFLSENQDFVEICRLHNIKFIGPSVEVMEKMADKSKAKEEMVRAGVPVVPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGD 164
              +            I  P + K   GG   G+ +I+       +       +    GD
Sbjct: 137 TGAVHNVDEGRKVAREIGYPIMAKASAGGGGRGMRLIESEDKFDQLFTAASSEALAAFGD 196

Query: 165 --QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L     +   +   V+GD+  +   I            +             +  +
Sbjct: 197 GTMYLERFINNPRHIEVQVVGDSHGNAIHIGERDCSLQ----RRHQKVIEESPAIILNDE 252

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY-- 280
              ++  +A  A + +   G    +FL D     ++++E+N +              +  
Sbjct: 253 TRAKLHAVAVKATKYLNYEGAGTFEFLADDKQN-IYFMEMNTR----------LQVEHPV 301

Query: 281 ----AGYSFRELLLWMVEDA 296
               +G    EL   M++ A
Sbjct: 302 SEMVSGIDIVEL---MIKVA 318


>gi|226365562|ref|YP_002783345.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
 gi|226244052|dbj|BAH54400.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
          Length = 669

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 59/188 (31%), Gaps = 21/188 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ ++++  ++   L  +             +++   L   
Sbjct: 150 AGDIGYPVLVKPSAGGGGKGMRLVEEPGALAEALRSARREAASAFGDDTLFLERFVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +  +     +   A    +++ 
Sbjct: 210 HIEVQILADGHGNVVHLGERECSLQRRHQKVIEEAPSPLLDEATRARIGEAACNTARSVD 269

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWM 292
             G    +F+    +  + F++E+N +              +       G    +L+ W 
Sbjct: 270 YSGAGTVEFIVSADTPDEFFFMEMNTR----------LQVEHPVTELVTGL---DLVEWQ 316

Query: 293 VEDASCLR 300
           V  A+  R
Sbjct: 317 VRVAAGER 324


>gi|121595930|ref|YP_987826.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax sp. JS42]
 gi|120608010|gb|ABM43750.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax sp. JS42]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/213 (15%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFQFIGPTPDSIRMMGDKVSAKQAMIRAGVPCVPGSDGELPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PVQIRRIAKSIGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAAFGNPAVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  IP  + +++     
Sbjct: 202 KFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRKLIEKIGERCV 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 AACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|32264940|gb|AAP78896.1| acetyl-coenzyme A carboxylase ACC1A [Zea mays]
          Length = 2324

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + + +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFVMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   +   ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPR 451


>gi|32264942|gb|AAP78897.1| acetyl-coenzyme A carboxylase ACC1B [Zea mays]
          Length = 2325

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + + +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFVMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   +   ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPR 451


>gi|162461024|ref|NP_001105373.1| acetyl-coenzyme A carboxylase [Zea mays]
 gi|854731|gb|AAA80214.1| acetyl-coenzyme A carboxylase [Zea mays]
          Length = 2325

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 57/174 (32%), Gaps = 5/174 (2%)

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            +          +     +      + S  ++  P +IK   GG   GI  +  D  +  
Sbjct: 282 PLECCLDAIPEEMYRKACVTTTEEAVASCQVVGYPAMIKASWGGGGKGIRKVHNDDEVRA 341

Query: 153 DLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
              Q      G  + + +       L   ++ D   +V  +            K      
Sbjct: 342 LFKQVQGEVPGSPIFVMRLASQSRHLEVQLLCDQYGNVAALHSRDCSVQRRHQKIIEEGP 401

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  K +++ A    +A+G  G +  ++L+   +   ++LE+N +
Sbjct: 402 VTVAPR----ETVKALEQAARRLAKAVGYVGAATVEYLYSMETGDYYFLELNPR 451


>gi|322807919|emb|CBZ05494.1| biotin carboxylase of acetyl-CoA carboxylase [Clostridium botulinum
           H04402 065]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNIYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPIVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGNFYFMEMNTR 292


>gi|310767855|gb|ADP12805.1| phosphoribosylglycinamide formyltransferase 2 [Erwinia sp. Ejp617]
          Length = 393

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D            RS          +  ++A  KPD     +
Sbjct: 25  GKEVALECQRLGVETIAVDRYADAPAMQVAHRSYVINMLDGAALATLIAKEKPDFVVPEI 84

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 85  EAIATDMLVELEKQGQNVVPTARAARLTMNREGIRRLAAEELQLPT-SDYRFADSYDAFC 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G   I++   +        +   G        V+G+   
Sbjct: 144 SAAQAIGFPCIIKPVMSSSGKGQSFIREAAQLASA--WEYAQQGGRAGAGRVIVEGVVKF 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  +++A     A+
Sbjct: 202 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSQLALQRARQIAEKVVAAL 259

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 260 GGHGLFGVELFVC--GDEVVFSEVSPRPHDTGM 290


>gi|228476010|ref|ZP_04060718.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis SK119]
 gi|314936351|ref|ZP_07843698.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
 gi|228269833|gb|EEK11313.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis SK119]
 gi|313654970|gb|EFS18715.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           hominis subsp. hominis C80]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 68/212 (32%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+G    + E  ++ +      +      K  +K  + +  VPV P     I   
Sbjct: 81  YGFLAENGDFAELCEACQLKFIGPSYQSIQKMGIKDVAKAEMIAANVPVVPGSDGLIDSI 140

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P +IK   GG   GI V + +  +      +             Y++ 
Sbjct: 141 EDAKKVAKQIGYPVIIKATAGGGGKGIRVARNENDLENGYRMTQQEAQTAFGNGGLYLEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
                  +    +      V         ++          P+ I  D  ++   + A  
Sbjct: 201 FIENFRHIEIQVIGDQFGNVIHLGERDCTIQRRMQKLVEESPSPILTDEKRKEMGKAAIR 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+        +F++D    K +++E+N +
Sbjct: 261 AAKAVNYENAGTIEFIYDLNENKFYFMEMNTR 292


>gi|78779398|ref|YP_397510.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. MIT 9312]
 gi|123554154|sp|Q31AM1|PURT_PROM9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|78712897|gb|ABB50074.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Prochlorococcus marinus str. MIT 9312]
          Length = 391

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/265 (10%), Positives = 67/265 (25%), Gaps = 29/265 (10%)

Query: 27  EDAGFKVSQID-------------------VDRSVGLV-LAHLKPDLAFNVLHGNFGEDG 66
           +  G +V  ID                    D+++    +    PD     +     E  
Sbjct: 28  KRLGLEVIAIDRYEKAPAMQVADYSKVIDMGDKNILKNSIKEFTPDFVVPEIEALSIEAL 87

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
                     +P   +  +       +    + +          I            I  
Sbjct: 88  KELEDEGFKIVPNARTVEITMNRDKIRELVSRDLKIKT-ANYDYIYKFEDLEKKADEIGF 146

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KPL   S  G  ++     +       S      +  ++  +    +         
Sbjct: 147 PLLLKPLMSSSGKGQSLVGSKNDLNQA---WSQAQANSRGQVKGVIIEEFINFDFEFTLL 203

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
                            L+ +        P +I   +  E +++       +   G+   
Sbjct: 204 TVRKNNGENIFCLPIGHLQSNGDYQCSWHPLEINQSLISEAKKMTTKILNNLNGSGLYGV 263

Query: 247 DFLFDPLSRKVFWLEINVQP---GM 268
           +F       +V + E++ +P   GM
Sbjct: 264 EFFV--KENEVIFSELSPRPHDTGM 286


>gi|291278872|ref|YP_003495707.1| acetyl-CoA carboxylase biotin carboxylase subunit [Deferribacter
           desulfuricans SSM1]
 gi|290753574|dbj|BAI79951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Deferribacter
           desulfuricans SSM1]
          Length = 445

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/280 (11%), Positives = 77/280 (27%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH------------------- 59
                 A ++ G +   +        +      +      H                   
Sbjct: 14  ALRIIRACKELGIETVAVYSTADKESLHVAFADEAICIGPHTASDSYLNIKNIIAAAEVA 73

Query: 60  ---------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                    G   E+     I E     +         L  +K ++K+ +   GVPV P 
Sbjct: 74  DVDGIHPGYGFLAENADFAKICEDCGFKFIGPKSEHIELMGNKAKAKETMKKYGVPVVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +      +     I  P +IK   GG   G+ V   + S       + + +     
Sbjct: 134 SEGAVADPDEALKIAKEIGFPVIIKASAGGGGKGMRVAHNEMSFLTQFETAKNESEKAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             + Y++    +   +       ++            ++          P+    +  + 
Sbjct: 194 CGDVYIEKYIESPRHIEIQVFGDSKGNAVHFFERECSIQRRHQKLIEEAPSPFLTERMRY 253

Query: 227 VQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  A + +G       +++ D  S   +++E+N +
Sbjct: 254 KMGEISVNAVKNLGYENAGTIEYIVD-SSGNFYFMEMNTR 292


>gi|256829742|ref|YP_003158470.1| phosphoribosylglycinamide formyltransferase 2 [Desulfomicrobium
           baculatum DSM 4028]
 gi|256578918|gb|ACU90054.1| phosphoribosylglycinamide formyltransferase 2 [Desulfomicrobium
           baculatum DSM 4028]
          Length = 393

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/268 (15%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D                       ++  ++   KP+     +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYENAPAMQVAHRSHTVSMLDGPALRRIIETEKPNFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 D LV+   E   +  T      +       R                      M
Sbjct: 84  E-AIATDTLVELEAEGYTVIPTARAAKLTMNREGIRRLAAEELGLRTSPYRFAATYEEYM 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P V+KP+   S  G  V+K             +   G     +  V+G    
Sbjct: 143 DAIQTVGTPCVVKPIMSSSGKGQSVVKAPADAEN--SWKYAQEGGRTGKGKVIVEG--FV 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  +      E +R+A     A+
Sbjct: 199 DFDYEITLLTVRHTGGTSFCAPIGHFQKDGDYQQSWQPQPMSEAALAEAKRMAEAVTGAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RGI   +F        V++ E++ +P
Sbjct: 259 GGRGIFGVEFFI--KGDTVYFSEVSPRP 284


>gi|119474880|ref|ZP_01615233.1| phosphoribosylglycinamide formyltransferase 2 [marine gamma
           proteobacterium HTCC2143]
 gi|119451083|gb|EAW32316.1| phosphoribosylglycinamide formyltransferase 2 [marine gamma
           proteobacterium HTCC2143]
          Length = 394

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/274 (14%), Positives = 75/274 (27%), Gaps = 39/274 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                      +++  V+   KPDL    +
Sbjct: 25  GKEVAIELQRLGVEVIAVDRYENAPAMQVAHRCHVINMLNGQALREVIELEKPDLIVPEI 84

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            IP   +  L       +  + + +                 +
Sbjct: 85  EAIATDTLAELEGEGFTIIPTAKATQLTMNREGIRRLAAEELGLKT-SPYQFAQTKDEYL 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P VIKP+   S  G  +++ D  I                  E    G    
Sbjct: 144 DAIKQIGLPCVIKPIMSSSGKGQSLLRADSDIETAW----------NYAQEGGRAGKGKV 193

Query: 179 CGVMGDASLDVTE-IAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAF 232
                         + +   D  SY                  P  +     K  Q +A 
Sbjct: 194 IIEGFVDFDFEITLLTIRHRDGTSYCAPIGHRQEGGDYQESWQPQAMTDAALKASQAMAK 253

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G +G+   +      + +V + E++ +P
Sbjct: 254 KVTTALGGKGLFGVELFI--KNDEVIFSEVSPRP 285


>gi|160896942|ref|YP_001562524.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160362526|gb|ABX34139.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 81/285 (28%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGIKAVMVYSEADRDAKYVKLADEAVCIGPAPSPLSYLNMPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +            DK+ +KQ +   GVP  P 
Sbjct: 74  DAEAIHPGYGFLSENADFAERVEKSGFTFIGPTPENIRTMGDKVSAKQAMIKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             +  P +IK   GG   G+ V+  + ++   +  + +     +
Sbjct: 134 SDGELPDDPVQIRRIAKAVGYPVIIKAAGGGGGRGMRVVHTEAALINAVQMTKAEAGAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +   +   +   ++ D   +   +            K         +P ++ 
Sbjct: 194 GNPAVYMEKFLQNPRHVEIQILADNHRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRRLV 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             I +        A + +G RG    +FLF   + + +++E+N +
Sbjct: 254 EKIGE----RCAAACKKLGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|53804795|ref|YP_113521.1| acetyl-CoA carboxylase, biotin carboxylase [Methylococcus
           capsulatus str. Bath]
 gi|53758556|gb|AAU92847.1| acetyl-CoA carboxylase, biotin carboxylase [Methylococcus
           capsulatus str. Bath]
          Length = 448

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQI--DVDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A  + G K   +  + DR +  V LA            D   N           
Sbjct: 14  ALRILRACRELGIKAVAVHSEADRDLKHVRLADESVCIGPAPSRDSYLNVPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +      +         +  DK+ + + +   G+P  P 
Sbjct: 74  DALAIHPGYGFLSENADFAEKVIQSGFIFIGPRPETIRMMGDKVAAIEAMKKAGIPTLPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       +     I  P +IK   GG   G+ V+  + S+   +  + S      
Sbjct: 134 SDGPLGDDEEENLAIARRIGFPIIIKAAGGGGGRGMRVVHSEASLAASIELTRSEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    +  +   V          +          PA  I     
Sbjct: 194 GNDMVYMEKFLENPRHIEFQVIADSHGNVVHLGERDCSTQRRHQKVVEEAPAPGITQAQR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+      A + IG  G    +FL+     + +++E+N +
Sbjct: 254 DEMGMRCVQACREIGYLGAGTFEFLY--QDGQFYFIEMNTR 292


>gi|15598087|ref|NP_251581.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
 gi|9948982|gb|AAG06279.1|AE004715_5 geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa PAO1]
          Length = 661

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++   L   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELILERAVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|47213733|emb|CAF96094.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 733

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK ++GG   G+ +   D      L         S+N    L+ +   D  
Sbjct: 184 AAQIGYPVMIKAVRGGGGKGMRIACSDADFLEQLESARREARKSFNDDVMLVEKFVEDPR 243

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +            +             I  ++ +++   A  A 
Sbjct: 244 HVEVQVFGDMHGNAVYLFERDCSVQ----RRHQKIIEEAPGPGIDAEVRRKLGEAAVRAA 299

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +F+ D      +++E+N +
Sbjct: 300 KAVSYVGAGTVEFIMDAQHN-FYFMEMNTR 328


>gi|116050894|ref|YP_790283.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|115586115|gb|ABJ12130.1| putative biotin carboxylase/biotin carboxyl carrier protein
           [Pseudomonas aeruginosa UCBPP-PA14]
          Length = 661

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++   L   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELILERAVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|16803397|ref|NP_464882.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes EGD-e]
 gi|47095940|ref|ZP_00233543.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|224499937|ref|ZP_03668286.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes Finland 1988]
 gi|224501700|ref|ZP_03670007.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL R2-561]
 gi|254827618|ref|ZP_05232305.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL N3-165]
 gi|254829886|ref|ZP_05234541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 10403S]
 gi|254898478|ref|ZP_05258402.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes J0161]
 gi|254912031|ref|ZP_05262043.1| acetyl-CoA carboxylase [Listeria monocytogenes J2818]
 gi|254936358|ref|ZP_05268055.1| acetyl-CoA carboxylase [Listeria monocytogenes F6900]
 gi|284801742|ref|YP_003413607.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5578]
 gi|284994884|ref|YP_003416652.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5923]
 gi|16410773|emb|CAC99435.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes EGD-e]
 gi|47015686|gb|EAL06616.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 1/2a F6854]
 gi|258599996|gb|EEW13321.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL N3-165]
 gi|258608949|gb|EEW21557.1| acetyl-CoA carboxylase [Listeria monocytogenes F6900]
 gi|284057304|gb|ADB68245.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5578]
 gi|284060351|gb|ADB71290.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 08-5923]
 gi|293589997|gb|EFF98331.1| acetyl-CoA carboxylase [Listeria monocytogenes J2818]
          Length = 454

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIHTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D      +++E+N +
Sbjct: 268 YSGAGTIEFIYDHHENNFYFMEMNTR 293


>gi|332006575|gb|AED93958.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 555

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 154 YGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQST 213

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 214 EEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEK 273

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 274 FVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTAELRKAMGD 329

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 330 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 364


>gi|239607851|gb|EEQ84838.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis ER-3]
 gi|327355792|gb|EGE84649.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Ajellomyces dermatitidis ATCC 18188]
          Length = 1182

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 186

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 187 TFGGQTALNLGVQMNRMGIFDRYGVKVLGTSIRTLEVSEDRDLFSKALNEINIPIAESVA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 247 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|261198318|ref|XP_002625561.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis SLH14081]
 gi|239595524|gb|EEQ78105.1| carbamoyl-phosphate synthase large subunit [Ajellomyces
           dermatitidis SLH14081]
          Length = 1182

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 186

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 187 TFGGQTALNLGVQMNRMGIFDRYGVKVLGTSIRTLEVSEDRDLFSKALNEINIPIAESVA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 247 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|262201758|ref|YP_003272966.1| pyruvate carboxylase [Gordonia bronchialis DSM 43247]
 gi|262085105|gb|ACY21073.1| pyruvate carboxylase [Gordonia bronchialis DSM 43247]
          Length = 1129

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +K + GG   G+  + + + +   +  +S            +++   +   
Sbjct: 148 AEDMRFPVFVKAVAGGGGRGMRQVPRIEDLAEAIGAASREAEAAFGDPTVFLEQAVVNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++        + PA     ++ + +   A    + IG
Sbjct: 208 HIEVQILADTHGDVIHLYERDCSVQRRHQKVIELAPAPNLSPELRERICADAVAFARHIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D     V ++E+N +
Sbjct: 268 YSCAGTVEFLLDEQGNHV-FIEMNPR 292


>gi|218890910|ref|YP_002439776.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
 gi|218771135|emb|CAW26900.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa LESB58]
          Length = 661

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++   L   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPDQLLDQLRTARSEALGAFGSAELILEKAVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|213966872|ref|ZP_03395022.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
 gi|301381554|ref|ZP_07229972.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302131513|ref|ZP_07257503.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|213928194|gb|EEB61739.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ ++Q +   +  +           E Y++       
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNPELYIEKFLGQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          PA      +   V      A + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGVDAALMSRVGERCAQACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|187251588|ref|YP_001876070.1| acetyl-CoA carboxylase, biotin carboxylase [Elusimicrobium minutum
           Pei191]
 gi|186971748|gb|ACC98733.1| Acetyl-CoA carboxylase, biotin carboxylase [Elusimicrobium minutum
           Pei191]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/151 (13%), Positives = 52/151 (34%), Gaps = 2/151 (1%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    I  P +IK   GG   G+  + K++ +   +  + +           Y + +
Sbjct: 145 NYKEIAKKIGFPIMIKATMGGGGKGMRAVMKEEDLDKMMQMAQNEARAAFGDDRVYFEKL 204

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
            L    +           V         ++          P   +  ++ K++ + A   
Sbjct: 205 VLAPRHIEVQVAADAHGNVLSFTERDCSMQRRHQKLVEESPSPFVTPEVRKKLTQAASKM 264

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A    G+   +FL D  ++  +++E+N +
Sbjct: 265 IKACQYTGVGTVEFLMD-QNKDFYFMEVNTR 294


>gi|326384107|ref|ZP_08205790.1| phosphoribosylglycinamide formyltransferase 2 [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197267|gb|EGD54458.1| phosphoribosylglycinamide formyltransferase 2 [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 503

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/290 (13%), Positives = 82/290 (28%), Gaps = 33/290 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D      V  V+   +PD     +
Sbjct: 26  GKEVTIALQRFGVEVIAVDRYADAPAHQVAHHAEVIDMTDPAQVRSVIDKHRPDYVLPEI 85

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + E+  +   + A+       R                       
Sbjct: 86  EAIATDTLETVEAEGVAEVIPSAKAVSATLDRERIRRLADEELGLPTSPYLFAGSLEEMR 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL--QSSSWNHGDQLLIEQYVDGIE 176
            +   I  P V+KP+   S  G  V+K    +       ++ +    D++++E +V+   
Sbjct: 146 AAAGSIGFPCVVKPVMSSSGKGQSVLKGPGDVDAAWEAARTGARVSNDRVIVEGFVEFDY 205

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A    T              +          P  +    Y   + +A     
Sbjct: 206 EITLLTVRAIDPATGRLATYFCDPIGHRQVDGDYVESWQPQPMSQAAYDVARSIAARIAT 265

Query: 237 AIGC-------RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           A+G        RG+   +        +V++ E++ +P      +    + 
Sbjct: 266 AMGSGRSEVSGRGVFGVELFV--KGDEVYFSEVSPRP--HDTGLVTMASQ 311


>gi|323352465|gb|EGA84966.1| Acc1p [Saccharomyces cerevisiae VL3]
          Length = 2110

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|289627065|ref|ZP_06460019.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289646280|ref|ZP_06477623.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298486968|ref|ZP_07005021.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|298158530|gb|EFH99597.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|330866801|gb|EGH01510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330891003|gb|EGH23664.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 53/146 (36%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++Q +   +  +S          E Y++       
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTSEEARRAFGNPELYIEKFLGQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  ++   V     LA + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGIDPELMARVGERCALACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|259148965|emb|CAY82209.1| Acc1p [Saccharomyces cerevisiae EC1118]
          Length = 2233

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|238896763|ref|YP_002921508.1| acetyl-CoA carboxylase biotin carboxylase subunit [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238549090|dbj|BAH65441.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp. pneumoniae
           NTUH-K2044]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|208434980|ref|YP_002266646.1| biotin carboxylase [Helicobacter pylori G27]
 gi|208432909|gb|ACI27780.1| biotin carboxylase [Helicobacter pylori G27]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            + +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|207341583|gb|EDZ69596.1| YNR016Cp-like protein [Saccharomyces cerevisiae AWRI1631]
          Length = 2043

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|189205801|ref|XP_001939235.1| aspartate carbamoyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975328|gb|EDU41954.1| aspartate carbamoyltransferase [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1840

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/294 (13%), Positives = 84/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +PD  + 
Sbjct: 464 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIQKERPDGIYV 523

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 524 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIETIITTEDRELFARSMESIGEKCAKSASAN 583

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 584 SVEEAMRVVKDIGFPVIVRAAYALGGLGSGFANNEAELLD--LCNKAFAASPQVLIERSM 641

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +    Y  ++  A 
Sbjct: 642 KGW-KEIEYEVVRDSRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDADYNMLRTTAV 700

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 701 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 750


>gi|151944544|gb|EDN62822.1| acetyl CoA carboxylase [Saccharomyces cerevisiae YJM789]
 gi|190408985|gb|EDV12250.1| acetyl CoA carboxylase [Saccharomyces cerevisiae RM11-1a]
 gi|256273334|gb|EEU08272.1| Acc1p [Saccharomyces cerevisiae JAY291]
 gi|323331766|gb|EGA73179.1| Acc1p [Saccharomyces cerevisiae AWRI796]
          Length = 2233

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|149194767|ref|ZP_01871862.1| acetyl-CoA carboxylase subunit A [Caminibacter mediatlanticus TB-2]
 gi|149135190|gb|EDM23671.1| acetyl-CoA carboxylase subunit A [Caminibacter mediatlanticus TB-2]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 49/254 (19%), Positives = 85/254 (33%), Gaps = 26/254 (10%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     + +   I +    +    L  DK ++K+V+ S GVPV P  
Sbjct: 78  DAIFPG-YGFLSENQTFVEVCKAHNISFIGPSLEVMELMADKSKAKEVMKSAGVPVIPGS 136

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I            I  P ++K   GG   G+ V++ +  +    L +SS        
Sbjct: 137 EGAIKDIEEAKKVAREIGYPVILKAASGGGGRGMRVVEDESYLENAFLAASSEAESAFGD 196

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    L      V         L+          PA I   +  K+
Sbjct: 197 ATIYMEKYIEKPRHVEVQILGDKHGNVIHLGERDCSLQRRHQKLIEESPATILDEETRKK 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280
           +   A  A +AIG       +FL D      +++E+N +              +      
Sbjct: 257 LHETAVKAAKAIGYYSAGTIEFLVD-KDLNFYFMEMNTR----------LQVEHPVSEMV 305

Query: 281 AGYSFRELLLWMVE 294
            G    +L+ WM+ 
Sbjct: 306 TGL---DLVEWMIR 316


>gi|171504|gb|AAA20073.1| acetyl-CoA carboxylase [Saccharomyces cerevisiae]
          Length = 2237

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|79329027|ref|NP_001031968.1| CAC2; acetyl-CoA carboxylase/ biotin carboxylase [Arabidopsis
           thaliana]
 gi|332006574|gb|AED93957.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 499

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 154 YGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQST 213

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 214 EEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEK 273

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 274 FVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTAELRKAMGD 329

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 330 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 364


>gi|6324343|ref|NP_014413.1| Acc1p [Saccharomyces cerevisiae S288c]
 gi|1705966|sp|Q00955|ACAC_YEAST RecName: Full=Acetyl-CoA carboxylase; Short=ACC; AltName:
           Full=Fatty acid synthetase 3; AltName: Full=mRNA
           transport-defective protein 7; Includes: RecName:
           Full=Biotin carboxylase
 gi|1302498|emb|CAA96294.1| ACC1 [Saccharomyces cerevisiae]
 gi|285814663|tpg|DAA10557.1| TPA: Acc1p [Saccharomyces cerevisiae S288c]
          Length = 2233

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 226 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 285

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 286 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 342

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 343 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 383


>gi|319939770|ref|ZP_08014127.1| acetyl-CoA carboxylase [Streptococcus anginosus 1_2_62CV]
 gi|319811108|gb|EFW07419.1| acetyl-CoA carboxylase [Streptococcus anginosus 1_2_62CV]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         L  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDLMGDKINARAQMIKANVPVIPGSGG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K + +      +S      + +G 
Sbjct: 137 EVHTSDEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASREAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +   +   I 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVLEESPSVAIGKTLRQKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     A  A +++G       +FLFD   R+ +++E+N +
Sbjct: 257 E----AAVRAAKSVGYENAGTIEFLFDEDKREFYFMEMNTR 293


>gi|172044614|sp|Q0KAH8|PURT_RALEH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 401

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 28/282 (9%)

Query: 19  GKACASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNV 57
           GK    AL+  G +   +                     D D  +  ++   KP L    
Sbjct: 24  GKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMSDPD-QLKALIEAEKPHLVVPE 82

Query: 58  LHGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +                +  IP   +  L       +  + + +     P      ++  
Sbjct: 83  IEAIATPMLETLEAAGTVRVIPTARAARLTMDREGIRRLAAESLGLPTSPYKFCDSLDEL 142

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGI 175
                  I  P V+KP+   S  G   I   + +      + +        +I +     
Sbjct: 143 QAAIDGGIGYPCVVKPVMSSSGKGQSKIDGPEGVKAAWDYAMAGGRVSHGRVIVEGFIDF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +    ++   ++  +     +       ++ S        P  +     +  QR+A    
Sbjct: 203 DYEITLLTVRAMGASGQVETQFCAPIGHVQVSGDYVESWQPQPMHPAALETAQRIAQAVT 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             +G  G+   +        +V++ E++ +P      +    
Sbjct: 263 ADLGGMGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMA 300


>gi|157150200|ref|YP_001450966.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gordonii str. Challis substr. CH1]
 gi|157074994|gb|ABV09677.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus gordonii
           str. Challis substr. CH1]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGVKFIGPSGAIMDMMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVFTADEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K      +  +   +   I 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVLEEAPSVAIGKTLRQKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q++G       +FL+D    + +++E+N +
Sbjct: 257 D----AAVRAAQSVGYENAGTIEFLYDENKGEFYFMEMNTR 293


>gi|113867872|ref|YP_726361.1| phosphoribosylglycinamide formyltransferase 2 [Ralstonia eutropha
           H16]
 gi|113526648|emb|CAJ92993.1| phosphoribosylglycinamide formyltransferase 2 [Ralstonia eutropha
           H16]
          Length = 386

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 28/282 (9%)

Query: 19  GKACASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNV 57
           GK    AL+  G +   +                     D D  +  ++   KP L    
Sbjct: 9   GKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMSDPD-QLKALIEAEKPHLVVPE 67

Query: 58  LHGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +                +  IP   +  L       +  + + +     P      ++  
Sbjct: 68  IEAIATPMLETLEAAGTVRVIPTARAARLTMDREGIRRLAAESLGLPTSPYKFCDSLDEL 127

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGI 175
                  I  P V+KP+   S  G   I   + +      + +        +I +     
Sbjct: 128 QAAIDGGIGYPCVVKPVMSSSGKGQSKIDGPEGVKAAWDYAMAGGRVSHGRVIVEGFIDF 187

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +    ++   ++  +     +       ++ S        P  +     +  QR+A    
Sbjct: 188 DYEITLLTVRAMGASGQVETQFCAPIGHVQVSGDYVESWQPQPMHPAALETAQRIAQAVT 247

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             +G  G+   +        +V++ E++ +P      +    
Sbjct: 248 ADLGGMGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMA 285


>gi|60593826|pdb|1W96|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
           Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
           Complex With Soraphen A
 gi|60593827|pdb|1W96|B Chain B, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
           Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
           Complex With Soraphen A
 gi|60593828|pdb|1W96|C Chain C, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
           Coenzyme A Carboxylase From Saccharomyces Cerevisiae In
           Complex With Soraphen A
          Length = 554

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 214 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 273

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 274 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 330

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 331 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 371


>gi|328856393|gb|EGG05514.1| hypothetical protein MELLADRAFT_48710 [Melampsora larici-populina
           98AG31]
          Length = 2268

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/162 (14%), Positives = 55/162 (33%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +     +      +     I  P +IK  +GG   GI  ++  +              G 
Sbjct: 223 IYHQACVTDVEGGLVKAEEIGYPVMIKASEGGGGKGIRKVESAKDFGQAFNAVIGEVPGS 282

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   V+ D   +   +            K        + P+    D 
Sbjct: 283 PVFIMKLAGAARHLEVQVLADQYGNAISLFGRDCSVQRRHQKIIEEAPVTIAPS----DT 338

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++++++ A    + +G      ++FL++  +   ++LE+N +
Sbjct: 339 FEQMEKAAVRLAKLVGYVSAGTTEFLYEASTDNFYFLELNPR 380


>gi|330811486|ref|YP_004355948.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
 gi|327379594|gb|AEA70944.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 393

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 79/285 (27%), Gaps = 35/285 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK     L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   KP      +        +         IP   +  L       +  + + + 
Sbjct: 67  LRAVIEAEKPHFIVPEIEAIATATLVELEAEGFTVIPTARAAQLTMNREGIRRLAAEELG 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   +  P V+KP+   S  G  +++    +        +  
Sbjct: 127 LPT-SPYFFADTVEDYRKAVETLGFPCVVKPVMSSSGKGQSLLRSTDDVQKA--WDYAQE 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        ++G            L V  +            +          P  +  
Sbjct: 184 GGRAGKGRVIIEG--FIDFDYEITLLTVRHVGGTTFCAPVGHRQEKGDYQESWQPQAMSP 241

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 242 VALAESERVAKAVTEALGGRGLFGVELFI--KGDQVWFSEVSPRP 284


>gi|297801062|ref|XP_002868415.1| hypothetical protein ARALYDRAFT_493601 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314251|gb|EFH44674.1| hypothetical protein ARALYDRAFT_493601 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 537

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 154 YGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQST 213

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 214 EEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEK 273

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 274 FVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTAELRKAMGD 329

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 330 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 364


>gi|254519768|ref|ZP_05131824.1| biotin carboxylase [Clostridium sp. 7_2_43FAA]
 gi|226913517|gb|EEH98718.1| biotin carboxylase [Clostridium sp. 7_2_43FAA]
          Length = 447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/218 (18%), Positives = 78/218 (35%), Gaps = 9/218 (4%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H   G   E+    +I E   I +        ++  DK R+++++ +  VPV P   
Sbjct: 76  NAIHPGFGFLSENAEFASICEECNIKFIGPSSKTISIMGDKARAREIMKNADVPVIPGSN 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +            I  P +IK   GG   GI ++ K+  +      + S    +    
Sbjct: 136 GIVKSIEEAYIEAKEIGYPVMIKAALGGGGKGIRIVHKEDELENAYFTAKSEAKVNFGDD 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
             Y++        +    L      +         ++  +       P+ I   D+  E+
Sbjct: 196 TIYIEKFIENPRHIEFQILGDEHGNIIHLGERDCTIQRRNQKVLEEAPSSILSDDLRIEM 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            R A  A +A+        +FL D  S   +++E+N +
Sbjct: 256 GRAAINAAKAVNYFNAGTIEFLVDKYSN-FYFMEMNTR 292


>gi|215488563|ref|YP_002330994.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O127:H6 str. E2348/69]
 gi|215266635|emb|CAS11074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O127:H6 str. E2348/69]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSICMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|172038188|ref|YP_001804689.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           ATCC 51142]
 gi|171699642|gb|ACB52623.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cyanothece sp.
           ATCC 51142]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ +++++         +             Y++       
Sbjct: 150 ARDVGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFANAGVYLEKFIERPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+      + K++   A  A ++I 
Sbjct: 210 HIEFQILADSYGNVIHLGERDCSIQRRHQKLLEEAPSPFLTPQLRKKMGEAAVKAAKSIN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 270 YVGAGTVEFLVDNQGN-FYFMEMNTR 294


>gi|126642056|ref|YP_001085040.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)
           [Acinetobacter baumannii ATCC 17978]
          Length = 417

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/215 (16%), Positives = 72/215 (33%), Gaps = 14/215 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+     I+E     +         L  +K   + + +      VP C   +   
Sbjct: 43  YGFLSENAEFAEIVESSGFTFIGPRPEHIRLMGNKVSAIVAMKKAGVPTVPGCDHAVTIH 102

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQLLIEQY 171
             +     I  P ++K   GG   G+ ++++  ++          +  W   D + +E++
Sbjct: 103 NALAEAKEIGFPLIVKAAAGGGGRGMRIVERVDTLLESVQAAQRDAEMWFGDDTVYMERF 162

Query: 172 -VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                 +   V+GD +     +            K         LP +   DI +     
Sbjct: 163 LQKPRHVEVQVLGDGNGHAIHLYDRDCSLQRRHQKVLEEAPAPNLPEQARADILQACVHA 222

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             L    +  RG    +FLF     + F++E+N +
Sbjct: 223 CQL----MQYRGAGTFEFLF--EDGEFFFIEMNTR 251


>gi|37527922|ref|NP_931267.1| acetyl-CoA carboxylase biotin carboxylase subunit [Photorhabdus
           luminescens subsp. laumondii TTO1]
 gi|36787358|emb|CAE16447.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase) (ACC)
           [Photorhabdus luminescens subsp. laumondii TTO1]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETICIGPAASAKSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLSDDTEKNKAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVLADGQGQAIYLAERDCSMQRRHQKVVEEAPAPGITPEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RSIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319935921|ref|ZP_08010345.1| acetyl-CoA carboxylase [Coprobacillus sp. 29_1]
 gi|319809035|gb|EFW05531.1| acetyl-CoA carboxylase [Coprobacillus sp. 29_1]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 74/221 (33%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++    + +         +  +K  +++++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSQFARLIIQCGLIWVGPSPEIIDMLGNKAEARKLMKEAGVPVIPGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            I       +    +  P +IK   GG   G+ +I+  +        +       +   +
Sbjct: 137 IIDSVEHGQNIAVDLGYPVMIKASNGGGGRGMRIIQNKEEFEKQYQNAKSEAKACFGDDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +   +   +   V+GD    V  +      F     +             +  ++ 
Sbjct: 197 VYLEKYIENPKHIEVQVVGDQYGHVIHLFERDCSFQ----RRHQKMIEEAPCHILKKNVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A   +G   +   +FL D      +++E+N +
Sbjct: 253 EKLFEDALKACHHVGYNSVGTIEFLLDKHGN-YYFMEMNTR 292


>gi|304396989|ref|ZP_07378869.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. aB]
 gi|304355785|gb|EFM20152.1| acetyl-CoA carboxylase, biotin carboxylase [Pantoea sp. aB]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGSLTDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          P     +  +
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQKVVEEAPGPGITEEQR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RFIGNRCAKACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|297620587|ref|YP_003708724.1| carbamoyl-phosphate synthase [Waddlia chondrophila WSU 86-1044]
 gi|297375888|gb|ADI37718.1| carbamoyl-phosphate synthase [Waddlia chondrophila WSU 86-1044]
          Length = 1447

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/300 (12%), Positives = 88/300 (29%), Gaps = 42/300 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                      SV  ++   KPD    
Sbjct: 407 SGSQAIKALKEEGIQTVLVNPNIATVQTDAEMADQVYLQPLNVSSVKKIIEREKPDGILL 466

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G    +  +       L+   I    +   +  L+ D+   K+ + S  V    S  
Sbjct: 467 SVGGQTALNLGLALEDAGILKDNHIQVLGTPTDSIRLTEDRELFKEALKSIDVKTARSLS 526

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKG----GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +      + +   I  P +++        GS +     +  +     L Q       + L
Sbjct: 527 VTSVVDALKAAETIGYPLMMRSAYSLGGLGSGVVATPFQLKKRAQEALSQVPQILIEESL 586

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
              + ++   +        ++   E   P        +  +   +       +  +I   
Sbjct: 587 FGWKEIEYEIVRDSDDNAITVCNMENFDPMGIHTGESIVVAPSQTLSNKEFHLLREI--- 643

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
               A  + + +   G     +  +P +     +E+N +  ++  S     +   GY   
Sbjct: 644 ----AIRSARRMNIIGECNIQYALNPKNGDYRVIEMNAR--LSRSS--ALASKATGYPLA 695


>gi|295398876|ref|ZP_06808860.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
 gi|294972886|gb|EFG48729.1| acetyl-CoA carboxylase subunit A [Aerococcus viridans ATCC 11563]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 71/248 (28%), Gaps = 15/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D      +G   E+       E     +   
Sbjct: 46  EAYCIGPASSSESYLNIERILSAAKISQADAIHPG-YGFLAENETFVQRCEEEGFKFIGP 104

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                 L  +K +++  V   G+P+ P     I      +     I  P V+K + GG  
Sbjct: 105 SGKLIGLMGNKAKARDTVGKNGLPIIPGSEGPIRDANEGLIIAKEIGYPVVVKAVSGGGG 164

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +I+ ++       ++             Y++        +    L   +       
Sbjct: 165 KGMRLIESEKEFKRLFHEARKEAMSSFNDSRVYLERFITDARHIEVQILGDGKGQAVHLF 224

Query: 199 FYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       PA I  D     +  L       +        ++L+    +  
Sbjct: 225 ERDCSIQNHNQKIIEEAPAVILDDSTRTYITELTAKVMANLHYESAGTVEYLYVEKEKAF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|253681005|ref|ZP_04861808.1| pyruvate carboxylase [Clostridium botulinum D str. 1873]
 gi|253562854|gb|EES92300.1| pyruvate carboxylase [Clostridium botulinum D str. 1873]
          Length = 1145

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   + ++ G + A+L  D   +    
Sbjct: 17  AIRIFRACNELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNQGPIEAYLNIDEIISLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK++SK V  S GVP  P
Sbjct: 77  KGVDAIHPGYGFLSENAEFARKCEEAGIEFIGPTAEMMEKLGDKIKSKLVAQSVGVPTIP 136

Query: 110 SILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +          +        P ++K   GG   G+ +++  + +      + +     +
Sbjct: 137 GVEKPVTSEEEAIKFADFCGYPIMLKAAAGGGGRGMRIVRNKEELLPSFRSAKNEAKKAF 196

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   V+GD   ++  +            K         LP    
Sbjct: 197 GIDDIFIEKYLENPKHIEVQVIGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPE--- 253

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +++   A    +++  R     +FL D      +++E+N +
Sbjct: 254 -EKREKICNDALKIAKSVNYRSAGTLEFLVDIHGNH-YFIEMNPR 296


>gi|218526266|gb|ACK86540.1| carbamoyl-phosphate synthase [Sisyra vicaria]
          Length = 722

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +PD    
Sbjct: 128 SGSQAIKALREESVQNILINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPDGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +        + I +   + D+    + +S     V    +
Sbjct: 188 TFGGQTALNCGVELEKAGVFKKYGCEILGTPIQSIIETEDRKIFAERISEIGEKVAPSIA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG      +  +   +L   +  H +QL+I++
Sbjct: 248 VYSVEEALKAAETLGYPVMARAAFSLGGLGSGFADNNDEL--KILAMQALAHSNQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AIKVIRHFGVVGECNIQYALNPQSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|13430734|gb|AAK25989.1|AF360279_1 putative acetyl-CoA carboxylase [Arabidopsis thaliana]
          Length = 537

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 154 YGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQST 213

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 214 EEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEK 273

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 274 FVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTAELRKAMGD 329

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 330 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 364


>gi|15238482|ref|NP_198386.1| CAC2; acetyl-CoA carboxylase/ biotin carboxylase [Arabidopsis
           thaliana]
 gi|75317871|sp|O04983|ACCC_ARATH RecName: Full=Biotin carboxylase, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A; Short=ACC; Flags:
           Precursor
 gi|1905876|gb|AAC09008.1| biotin carboxylase subunit [Arabidopsis thaliana]
 gi|1916300|gb|AAC09009.1| heteromeric acetyl-CoA carboxylase biotin carboxylase subunit
           [Arabidopsis thaliana]
 gi|3047099|gb|AAC13611.1| Arabidopsis thaliana biotin carboxylase subunit (GB:U90879)
 gi|10178099|dbj|BAB11486.1| acetyl-CoA carboxylase, biotin carboxylase [Arabidopsis thaliana]
 gi|21554097|gb|AAM63178.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|23297085|gb|AAN13088.1| acetyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332006573|gb|AED93956.1| biotin carboxylase [Arabidopsis thaliana]
          Length = 537

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 154 YGFLSENALFVEMCRDHGINFIGPNPDSIRVMGDKATARETMKNAGVPTVPGSDGLLQST 213

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 214 EEAVRVANEIGFPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGCYLEK 273

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 274 FVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTAELRKAMGD 329

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 330 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 364


>gi|315223839|ref|ZP_07865687.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           ochracea F0287]
 gi|314946169|gb|EFS98170.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           ochracea F0287]
          Length = 950

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 93/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTILINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ +   ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEASEKGLWKDFGVEIIGVDIDAIEITEDREKFCVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 76/240 (31%), Gaps = 10/240 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++ H KP+     L G        +     ++I  T    L  A       +    +
Sbjct: 635 IYDIIQHEKPEGVIVQLGGQTALKLAEKLDKYGIKIIGTSFQSLDLAEDRGSFSTLLKEN 694

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   P           +     +  P +++P       G+ ++   + +   ++      
Sbjct: 695 NIPYPRFGVAETADEALKLADELDFPLLVRPSYVLGGQGMKIVINKEELEAHVVDLLRKI 754

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++LL++ Y+DG IE     + D         +   +           ++  + P  + 
Sbjct: 755 PNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHMEPCGIHSG---DSNATLPPFNLG 811

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + ++++        A+   G+    F        V+ +E N +   T     P ++  
Sbjct: 812 EFVLQQIKDHTHKIALALNTVGLINVQFAV--KDDVVYIIEANPRASRT----VPFISKA 865


>gi|302061690|ref|ZP_07253231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato K40]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+ ++Q +   +  +           E Y++       
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVHEEQQLLDAIALTGEEARRAFGNPELYIEKFLGQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          PA      +   V      A + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGVDAALMSRVGERCAQACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|238754654|ref|ZP_04616007.1| Biotin carboxylase [Yersinia ruckeri ATCC 29473]
 gi|238707113|gb|EEP99477.1| Biotin carboxylase [Yersinia ruckeri ATCC 29473]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAASAKSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLDDDTTQNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEESINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SDMRRYIGERCAKACMEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|228966968|ref|ZP_04128006.1| Pyruvate carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
 gi|228792702|gb|EEM40266.1| Pyruvate carboxylase [Bacillus thuringiensis serovar sotto str.
           T04001]
          Length = 1058

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/151 (9%), Positives = 48/151 (31%), Gaps = 11/151 (7%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
                  P +IK   GG   G+ +++  + +     ++ S     + + +  + +     
Sbjct: 63  FAEKYDYPIIIKASLGGGGRGMRIVRTSEELGESYNRAKSEAKAAFGNDEVYVEKFVEKP 122

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   ++ D   +V  +            +             +  D+ + +   A   
Sbjct: 123 KHIEVQILADEEGNVVHLYERDCSVQ----RRHQKVVEIAPSVSLSDDLRQRICDAAVKL 178

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +        +FL      + +++E+N +
Sbjct: 179 TKNVNYLNAGTVEFLV--KDDEFYFIEVNPR 207


>gi|198276641|ref|ZP_03209172.1| hypothetical protein BACPLE_02837 [Bacteroides plebeius DSM 17135]
 gi|198270166|gb|EDY94436.1| hypothetical protein BACPLE_02837 [Bacteroides plebeius DSM 17135]
          Length = 389

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/253 (13%), Positives = 76/253 (30%), Gaps = 13/253 (5%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
               A A      +V  +    ++  V+   +PD+    +     E         +  +P
Sbjct: 39  AMQVADAC-----EVFSMLDGEALDRVVEKYRPDIIVPEIEAIRTERLYHLEKEGIQVVP 93

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              +          +  + + +                  ++   I  P VIKPL   S 
Sbjct: 94  SARAVNFTMNRKAIRDLAAKELGLKT-AKYFYASSYEELKEAAGKIGYPCVIKPLMSSSG 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G  V K ++ +            G +  I++ +    +             +       
Sbjct: 153 KGQSVAKSEEDLK---YSWEYGCSGSRGDIKELIVEEFIHFDSEITLLTVTQKDGPTLFC 209

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                ++          PA I  +   E Q++A    +A+   G+   +F     +  V+
Sbjct: 210 PPIGHVQKGGDYRESFQPAHIAPEHLAEAQQMAEKVTRALTGYGLWGVEFFLSHENG-VY 268

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 269 FSELSPRPHDTGM 281


>gi|170766037|ref|ZP_02900848.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia albertii
           TW07627]
 gi|170125183|gb|EDS94114.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia albertii
           TW07627]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMEKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACIDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|153815738|ref|ZP_01968406.1| hypothetical protein RUMTOR_01976 [Ruminococcus torques ATCC 27756]
 gi|145846979|gb|EDK23897.1| hypothetical protein RUMTOR_01976 [Ruminococcus torques ATCC 27756]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/277 (11%), Positives = 76/277 (27%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +  +     +   L  +                             
Sbjct: 17  IIRACREMGIETVAVYSEADKEALHTQLADEAVCIGPAQASESYLNMQNLISAALVSGAD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E  EI +            +K  ++  + + G+PV      
Sbjct: 77  AIHPGFGFLSENAKFAELCEQCEITFIGPDSKVIGKMGNKTEARATMIAAGIPVIRGTNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +L           I  P +IK   GG   G+   + ++      + +            
Sbjct: 137 AVLDLEEGKKEAARIGYPVIIKAALGGGGKGMRTAQSEEEFESCFVTARKEAEKAFGDGT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +  +   +         ++ +        P      ++ K++ 
Sbjct: 197 MYIEHFVEHPRHIEFQIIADSYGNIVHLGERDCSIQRNHQKMIEECPCAALSDELRKKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL        +++E+N +
Sbjct: 257 ETAVKAARAAGYTNAGTVEFLL-EKDGTFYFMEMNTR 292


>gi|60593823|pdb|1W93|A Chain A, Crystal Structure Of Biotin Carboxylase Domain Of Acetyl-
           Coenzyme A Carboxylase From Saccharomyces Cerevisiae
          Length = 553

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/161 (14%), Positives = 53/161 (32%), Gaps = 3/161 (1%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            +     I  P +IK  +GG   GI  +++++       Q+++   G 
Sbjct: 213 IYQKGCCTSPEDGLQKAKRIGFPVMIKASEGGGGKGIRQVEREEDFIALYHQAANEIPGS 272

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
            + I +   G      V   A    T   +          +                + +
Sbjct: 273 PIFIMKLA-GRARHLEVQLLADQYGTN--ISLFGRDCSVQRRHQKIIEEAPVTIAKAETF 329

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 330 HEMEKAAVRLGKLVGYVSAGTVEYLYSHDDGKFYFLELNPR 370


>gi|304312301|ref|YP_003811899.1| Acetyl-CoA carboxylase,biotin carboxylase subunit [gamma
           proteobacterium HdN1]
 gi|301798034|emb|CBL46256.1| Acetyl-CoA carboxylase,biotin carboxylase subunit [gamma
           proteobacterium HdN1]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 78/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV---------------LAHLKPDLAFNVLHGN 61
                 A ++ G K   +    DR +  +                ++L      +     
Sbjct: 14  ALRVLRACKELGIKTVAVYSTADRDLLHIKLADEAVCIGPAPAAESYLNIPAIISAAEVT 73

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI---------- 111
             +              +      +  + +        +    V    ++          
Sbjct: 74  CADAIHPGYGFLAENADFAERVKDSGFIFIGPEAETIRLMGNKVSAIHAMKAAGVPTVPG 133

Query: 112 ------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +  T+ +   +  P +IK   GG   G+ V+  +  +   +  + +      
Sbjct: 134 SDGPLGDDDNETLKTGRRVGYPVIIKAAAGGGGRGMRVVHSEDELLKAVSLTRAEARAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IY 224
                Y++    T   +    L   +            L+          PA    D + 
Sbjct: 194 GDASVYMEKFLTTPRHVEIQVLGDGQGNAVYLGDRDCSLQRRHQKVVEEAPAPGIPDALR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           KEV      A +AI  RG    +FL+   + + +++E+N +
Sbjct: 254 KEVGERCVEACKAINYRGAGTFEFLY--ENEQFYFIEMNTR 292


>gi|254933977|gb|ACT87597.1| carbamoylphosphate synthetase [Doa sp. JCR-2009]
          Length = 976

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKTKIFEKYNVTVLGTPIQSIVDTEDRKIFAEKINAIREKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L     +H DQL+I++
Sbjct: 496 VTTIEEALSAASQIGYPVMSRSAFSLGGLGSGFANNEEEL--KALAHQGLSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNQEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|259015969|gb|ACV89267.1| putative CAD trifunctional protein [Musca domestica]
          Length = 667

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 81  SGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEDVIKAERPNGVLL 140

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + V+     V    +
Sbjct: 141 TFGGQTALNCGVELERSGVFEKYNVKILGTPIKSIIETEDRKIFAERVNEIGEKVAPSEA 200

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +  H  QL+I++
Sbjct: 201 VYSVEEALMAAKRIGYPVMARAAFSLGGLGSGFADNEEELET--LAKHALAHSSQLIIDK 258

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 259 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLNNKEYNMLRST 317

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 318 ALKVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 373

Query: 291 WM 292
            +
Sbjct: 374 KL 375


>gi|34398191|gb|AAQ67185.1| CAD [Musca domestica]
          Length = 1274

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 366 SGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEDVIKAERPNGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + V+     V    +
Sbjct: 426 TFGGQTALNCGVELERSGVFEKYNVKILGTPIKSIIETEDRKIFAERVNEIGEKVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +  H  QL+I++
Sbjct: 486 VYSVEEALMAAKRIGYPVMARAAFSLGGLGSGFADNEEELET--LAKHALAHSSQLIIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLNNKEYNMLRST 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 603 ALKVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|15672760|ref|NP_266934.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. lactis Il1403]
 gi|12723697|gb|AAK04876.1|AE006311_7 biotin carboxylase [Lactococcus lactis subsp. lactis Il1403]
 gi|326406330|gb|ADZ63401.1| acetyl-CoA carboxylase biotin carboxylase [Lactococcus lactis
           subsp. lactis CV56]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGD 164
            +      +     I  P ++K   GG   GI  +   + +      + +       +G 
Sbjct: 137 EVHTTDEAVKIAEEIGYPIMLKASAGGGGKGIRKVNNVEELVPAFEAAQAEAQAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD+  +V  +            K    + +  +   +  +I 
Sbjct: 197 MFIERMIFPARHIEVQILGDSQGNVIHLGERDCSLQRNNQKVLEESPSVAIGHTLRNEIT 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q +        +FL D  S K +++E+N +
Sbjct: 257 A----AAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNTR 293


>gi|27379401|ref|NP_770930.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27352552|dbj|BAC49555.1| biotin carboxylase subunit of acetyl-CoA carboxylasee
           [Bradyrhizobium japonicum USDA 110]
          Length = 452

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 69/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILSEHNLHFIGPKAEHIRLMGDKIEAKKTAKKLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   +     I  P ++K   GG   G+ V   +  + + L  +++        
Sbjct: 135 DGAVGPDDDALGIARKIGFPVLVKAAAGGGGRGMKVAHSEADLLMALSTAANEAKSAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L                L+          P+ +     +  
Sbjct: 195 ASVYLEKYLQKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPVLSAAARAK 254

Query: 228 QRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  A + +   G+   +FLF     + +++E+N +
Sbjct: 255 IGETCAKAMREMKYLGVGTIEFLF--EDGEFYFIEMNTR 291


>gi|116511587|ref|YP_808803.1| acetyl-CoA carboxylase biotin carboxylase subunit [Lactococcus
           lactis subsp. cremoris SK11]
 gi|116107241|gb|ABJ72381.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Lactococcus lactis subsp. cremoris SK11]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEEMNIKFIGPSAKVMDMMGDKINARAEMIKAGVPVTPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN-----HGD 164
            +      +     I  P ++K   GG   GI  +   + +      + +       +G 
Sbjct: 137 EVHTTDEAVKIAEEIGYPIILKASAGGGGKGIRKVNTVEELVPAFEAAQAEAQAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD+  +V  +            K    + +  +   +  +I 
Sbjct: 197 MFIERMIFPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVLEESPSVAIGHTLRNEIT 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q +        +FL D  S K +++E+N +
Sbjct: 257 S----AAVKAAQHVSYENAGTIEFLLDESSGKFYFMEMNTR 293


>gi|327266710|ref|XP_003218147.1| PREDICTED: methylcrotonoyl-CoA carboxylase subunit alpha,
           mitochondrial-like [Anolis carolinensis]
          Length = 711

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 58/182 (31%), Gaps = 9/182 (4%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK ++GG   G+ +   D+     L  +              ++      
Sbjct: 183 QARRIGYPVMIKAVRGGGGKGMRIALSDKEFQEQLESARREAKKSFNDDAMLIEKFVDNP 242

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAI 238
             +                     ++          P   I  D+ +++   A  A +A+
Sbjct: 243 RHVEVQVFGDHHGNAVYLFERDCSVQRRHQKIIEEAPGPGITPDVRRKLGEAAVKAAKAV 302

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
              G    +F+ D      +++E+N +  +       EM      +  +L+ W ++ A+ 
Sbjct: 303 NYVGAGTVEFIMDREHN-FYFMEMNTR--LQVEHPVTEM-----ITGTDLVEWQLKIAAG 354

Query: 299 LR 300
            +
Sbjct: 355 EK 356


>gi|254934063|gb|ACT87640.1| carbamoylphosphate synthetase [Hypena scabra]
          Length = 976

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALHEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I +   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKIFQKYNVSVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSIEEAIAAARQIGFPVMSRSAFSLGGLGSGFANXEXELRT--LAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIQHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|241554145|ref|YP_002979358.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240863451|gb|ACS61113.1| acetyl-CoA carboxylase, biotin carboxylase [Rhizobium leguminosarum
           bv. trifolii WSM1325]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+ K   +   +  +             Y++       
Sbjct: 160 ALEIGYPVIIKAAGGGGGRGMRVVPKADLLHEAIALTREEARKAFGSPSLYIEKFLEHPR 219

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++          PA  I  DI + V      A   IG
Sbjct: 220 HIEIQVICDDHGNAVWLGHRDCSMQRRHQKVVEEAPAPGIAPDIIQPVGLACVKACLQIG 279

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+       +++E+N +
Sbjct: 280 YRGVGTFEFLY--EDGAFYFIEMNTR 303


>gi|189485190|ref|YP_001956131.1| biotin carboxylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
 gi|170287149|dbj|BAG13670.1| biotin carboxylase [uncultured Termite group 1 bacterium phylotype
           Rs-D17]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/320 (13%), Positives = 105/320 (32%), Gaps = 56/320 (17%)

Query: 22  CASALEDAGFKVSQI--DVDR------------------------SVGLVLAHLKPDLAF 55
              A  + G K   I  +VDR                        ++  ++A  +   A 
Sbjct: 17  VIRACRELGIKTIAIHSEVDRESMHVKFADQSICVGDASVSESYLNIPSIIAAAEISGA- 75

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
           + +H   G   E+     + E   + +      +     +K+ + +++   G+PV P   
Sbjct: 76  DAIHPGYGFLAENTYFAEVCEACRLNFIGPSKESIEQMGNKITAIKLMKKSGIPVIPGSD 135

Query: 113 -----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                 +    D+   I  P +IK   GG   G+ ++   +++   ++ + +        
Sbjct: 136 GPVNVDDPKIFDTAQKIGYPVIIKATAGGGGKGMRIVTSKENLKNSIVMAQTEAKAAFGN 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKE 226
            E Y++        +    L                ++          P+ +  D + K+
Sbjct: 196 PEIYMEKYIEEPHHIEFQILGDKYGKTAYLPERDCSIQRRHQKLIEESPSPLISDTLRKK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------ 280
           + R+A  A +A+    +   +FL D      +++E+N +              +      
Sbjct: 256 MGRVARNAAEAVKYVTVGTVEFLVDKK-GYFYFIEMNTR----------IQVEHPVTELV 304

Query: 281 AGYSFRELLLWMVEDASCLR 300
            G    +L+   ++ A+  +
Sbjct: 305 TGI---DLVKEQIKLAAGEK 321


>gi|126657223|ref|ZP_01728389.1| acetyl-CoA carboxylase [Cyanothece sp. CCY0110]
 gi|126621494|gb|EAZ92205.1| acetyl-CoA carboxylase [Cyanothece sp. CCY0110]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++++         +             Y++       
Sbjct: 149 ARDIGYPVMIKATAGGGGRGMRLVREESEFSRLFQAAQGEAEAAFGNAGVYLEKFIERPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++          P+ +    + K++   A  A ++I 
Sbjct: 209 HIEFQILADSYGNVIHLGERDCSIQRRHQKLLEEAPSPVLTPQLRKKMGEAAVKAAKSIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 269 YVGAGTVEFLVDNQGN-FYFMEMNTR 293


>gi|150019768|ref|YP_001312022.1| pyruvate carboxylase [Clostridium beijerinckii NCIMB 8052]
 gi|149906233|gb|ABR37066.1| pyruvate carboxylase [Clostridium beijerinckii NCIMB 8052]
          Length = 1146

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 90/284 (31%), Gaps = 41/284 (14%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   + ++ G V A+L  D   N    
Sbjct: 17  AIRIFRACHELGIRTVAIYTEEDKFALFRTKAHEAYQIGKNKGPVEAYLNIDEIINLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK++SK V    GVPV P
Sbjct: 77  KHVDAIHPGYGFLSENPDFARRCEEAGIEFIGPKSEMMEKLGDKIKSKIVAKEVGVPVIP 136

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWN 161
            +     + +    I+     P +IK   GG   G+ +++ +  +         ++    
Sbjct: 137 GVEKPISSEEEAIEIAKICGFPVMIKAAAGGGGRGMRIVRSENELLPSFRNAKNEAKKAF 196

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
             D + IE+Y++G +     +             +        +             +  
Sbjct: 197 GNDDMFIEKYIEGPKHIEIQVLGDKHGNIVHLYERDCSIQ---RRHQKVIEIAPALSLTQ 253

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +E+   A    +++G R     +FL D      +++E+N +
Sbjct: 254 EKREEICVDALKIAKSVGYRSAGTLEFLVDMHGNH-YFIEMNPR 296


>gi|285017130|ref|YP_003374841.1| acetyl-CoA carboxylase, biotin carboxylase subunit protein
           [Xanthomonas albilineans GPE PC73]
 gi|283472348|emb|CBA14854.1| probable acetyl-coa carboxylase, biotin carboxylase subunit protein
           [Xanthomonas albilineans]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   + + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|110643492|ref|YP_671222.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           536]
 gi|117625538|ref|YP_858861.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           APEC O1]
 gi|162138360|ref|YP_542664.2| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UTI89]
 gi|191173827|ref|ZP_03035348.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli F11]
 gi|218560318|ref|YP_002393231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           S88]
 gi|218691539|ref|YP_002399751.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           ED1a]
 gi|300979728|ref|ZP_07174678.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 200-1]
 gi|306816409|ref|ZP_07450541.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           NC101]
 gi|331649048|ref|ZP_08350136.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M605]
 gi|331659535|ref|ZP_08360477.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA206]
 gi|110345084|gb|ABG71321.1| biotin carboxylase [Escherichia coli 536]
 gi|115514662|gb|ABJ02737.1| acetyl-CoA carboxylase [Escherichia coli APEC O1]
 gi|190905877|gb|EDV65495.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli F11]
 gi|218367087|emb|CAR04858.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli S88]
 gi|218429103|emb|CAR10047.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli ED1a]
 gi|281180290|dbj|BAI56620.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE15]
 gi|294490059|gb|ADE88815.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           IHE3034]
 gi|300307946|gb|EFJ62466.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 200-1]
 gi|305849974|gb|EFM50433.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           NC101]
 gi|307625151|gb|ADN69455.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UM146]
 gi|315289046|gb|EFU48444.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 110-3]
 gi|315300910|gb|EFU60130.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 16-3]
 gi|323951233|gb|EGB47108.1| acetyl-CoA carboxylase [Escherichia coli H252]
 gi|323957604|gb|EGB53318.1| acetyl-CoA carboxylase [Escherichia coli H263]
 gi|324015855|gb|EGB85074.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 60-1]
 gi|330909297|gb|EGH37811.1| biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           AA86]
 gi|331042795|gb|EGI14937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M605]
 gi|331054117|gb|EGI26146.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA206]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|207091935|ref|ZP_03239722.1| biotin carboxylase [Helicobacter pylori HPKX_438_AG0C1]
          Length = 455

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|148653455|ref|YP_001280548.1| acetyl-CoA carboxylase, biotin carboxylase [Psychrobacter sp.
           PRwf-1]
 gi|148572539|gb|ABQ94598.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Psychrobacter sp. PRwf-1]
          Length = 449

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 53/151 (35%), Gaps = 11/151 (7%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDG 174
               I  P +IK   GG   G+ ++++   +   +  +       +      +     + 
Sbjct: 146 QAKNIGFPLLIKAAAGGGGRGMRIVERFDQLNEQVQAAKQEAELWFGDDSVYMERYLQNP 205

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V+GD + +   +            K         +P     DI + + +    A
Sbjct: 206 RHIEVQVLGDGNGNAIHLYDRDCSLQRRHQKVLEEAPAPDIPD----DIREPILQACVKA 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG RG    +FLF     + F++E+N +
Sbjct: 262 CETIGYRGAGTFEFLF--EDGEFFFIEMNTR 290


>gi|237705996|ref|ZP_04536477.1| acetyl CoA carboxylase [Escherichia sp. 3_2_53FAA]
 gi|91074252|gb|ABE09133.1| acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli UTI89]
 gi|226899036|gb|EEH85295.1| acetyl CoA carboxylase [Escherichia sp. 3_2_53FAA]
          Length = 462

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 27  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 86

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 87  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 146

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 147 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTRAEAKAAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 207 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 262

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 263 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 305


>gi|70731891|ref|YP_261633.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68346190|gb|AAY93796.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           fluorescens Pf-5]
          Length = 457

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/140 (14%), Positives = 50/140 (35%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   GI + +    +  +  ++             Y++        +   
Sbjct: 156 FPLLIKASAGGGGRGIRLARDAAQLTEEFPRAQREAQTAFGNGAVYLERFIGRARHIEVQ 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            L   + AV   +      +             +  +  +++   A    +A+G +G   
Sbjct: 216 VLGDGKHAVHLFERECSLQRRRQKIFEEAPSPVLSAEQREQLCSSAVRLTEALGYQGAGT 275

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            ++L+D  + + F++E+N +
Sbjct: 276 LEYLYDDSTGEFFFIEMNTR 295


>gi|324012287|gb|EGB81506.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 60-1]
          Length = 461

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +      + S ++   +L++ ++D       
Sbjct: 93  AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVE 149

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  DA  D   + +     +  +    S +S   LPA     +I   +++        + 
Sbjct: 150 VDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 209

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 210 VRGLMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 255


>gi|313201473|ref|YP_004040131.1| phosphoribosylglycinamide formyltransferase 2 [Methylovorus sp.
           MP688]
 gi|312440789|gb|ADQ84895.1| phosphoribosylglycinamide formyltransferase 2 [Methylovorus sp.
           MP688]
          Length = 399

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 26/283 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAH----LKPDLAFNVL 58
           GK    AL+  G +V  +D                +D +    L       KP L    +
Sbjct: 23  GKEVIIALQRLGVEVIAVDRYANAPGHQVAHRSHVIDMTDADALQALVALEKPHLIVPEI 82

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                E         L   +P   +  L       +  + + +S    P   +       
Sbjct: 83  EALNTEVLARIEEQGLSTVVPTVKAVQLTMNREGIRRLAAETLSLPTSPYAFARSEQELQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIE 176
               + I  P  +KP    S  G   I     +      ++S    +Q ++I +     +
Sbjct: 143 AAIDNGIGYPCFVKPTMSSSGKGQSRITSQDQVAKAWDYAASAGRVNQGVVIVEGQIAFD 202

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + D T              + S        P  +      E QR+A     
Sbjct: 203 FEITLLTLRAKDSTGAIQTYFCEPIGHRQESGDYVESWQPQAMTSQALAEAQRIAKAVTD 262

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           ++G  G+   +        +V++ E++ +P      +    + 
Sbjct: 263 SLGGLGLFGVELFI--KGDQVWFSEVSPRP--HDTGMVTMASQ 301


>gi|301330198|ref|ZP_07222860.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 78-1]
 gi|300843838|gb|EFK71598.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 78-1]
          Length = 464

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +      + S ++   +L++ ++D       
Sbjct: 96  AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVE 152

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  DA  D   + +     +  +    S +S   LPA     +I   +++        + 
Sbjct: 153 VDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 212

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 213 VRGLMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 258


>gi|301019780|ref|ZP_07183926.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 69-1]
 gi|300399117|gb|EFJ82655.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 69-1]
          Length = 463

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +      + S ++   +L++ ++D       
Sbjct: 95  AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVE 151

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  DA  D   + +     +  +    S +S   LPA     +I   +++        + 
Sbjct: 152 VDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 211

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 212 VRGLMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 257


>gi|300900945|ref|ZP_07119080.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 198-1]
 gi|300355608|gb|EFJ71478.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 198-1]
          Length = 439

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +      + S ++   +L++ ++D       
Sbjct: 71  AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVE 127

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  DA  D   + +     +  +    S +S   LPA     +I   +++        + 
Sbjct: 128 VDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 187

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 188 VRGLMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 233


>gi|300984172|ref|ZP_07176900.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 200-1]
 gi|300306702|gb|EFJ61222.1| putative carbamoyl-phosphate synthase, large subunit [Escherichia
           coli MS 200-1]
          Length = 465

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/172 (15%), Positives = 62/172 (36%), Gaps = 10/172 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P V++P        + ++  +  +      + S ++   +L++ ++D       
Sbjct: 97  AKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDD---AVE 153

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           V  DA  D   + +     +  +    S +S   LPA     +I   +++        + 
Sbjct: 154 VDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQ 213

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            RG+    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 214 VRGLMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 259


>gi|119489253|ref|ZP_01622060.1| acetyl-CoA carboxylase [Lyngbya sp. PCC 8106]
 gi|119454727|gb|EAW35872.1| acetyl-CoA carboxylase [Lyngbya sp. PCC 8106]
          Length = 451

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 69/217 (31%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHDIAFIGPTPEAIRSMGDKSTAKETMQKVGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +        I  P +IK   GG   G+ ++++   +      +            
Sbjct: 138 LVTNEKEAAKIALQIGYPVIIKATAGGGGRGMRLVREPSELSKQFSAAQGEAEAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++          P+      + +++ 
Sbjct: 198 VYLEKFIELPRHIEFQILADGHGNVIHLGERDCSIQRRHQKLLEESPSPALSSQLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A Q+I   G    +FL D  +   +++E+N +
Sbjct: 258 EAAVKAAQSINYTGAGTVEFLLD-KTGNFYFMEMNTR 293


>gi|88601434|ref|YP_501612.1| carbamoyl phosphate synthase large subunit [Methanospirillum
           hungatei JF-1]
 gi|121723885|sp|Q2FLD9|CARB_METHJ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|88186896|gb|ABD39893.1| carbamoyl-phosphate synthase large subunit [Methanospirillum
           hungatei JF-1]
          Length = 1056

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/295 (14%), Positives = 89/295 (30%), Gaps = 37/295 (12%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++V  +         D D              V  +L             G   
Sbjct: 566 ALREDGYEVHVVNNNPETVSTDFDTSDRLFFEPMTLEDVSHILQKDDYYGVMVQFGGQNA 625

Query: 64  EDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
            +  V    E         I  T    +  A   D+        S   P   S    +  
Sbjct: 626 VNLAVPLKNEIDRLNLKTRILGTTPDAMDMAEDRDRFSVLLDSLSIPTPPNGSAYSEQEA 685

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
             +   I  P +++P        + ++  D  +   + ++   +    +LI+++  + IE
Sbjct: 686 YATAERIGYPVLVRPSYVLGGRAMEIVHDDTELATYMREAVRVSKSHPVLIDRFLQNAIE 745

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L    + D +  +    +   +       +S  ++  + P  +  +I  +V+        
Sbjct: 746 LDVDAVCDGTDVIIGGIMEHIETAG---VHSGDSACVIPPQSLSPEILADVRDYTRKIAL 802

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
            +G  G+    F        V+ LE N +   T     P +A   G    ++   
Sbjct: 803 GLGVVGLVNIQFAV--QGSTVYVLEANPRASRT----VPFVAKSVGIPLAKIAAR 851



 Score = 42.9 bits (99), Expect = 0.056,   Method: Composition-based stats.
 Identities = 44/300 (14%), Positives = 89/300 (29%), Gaps = 31/300 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLK------------PDLAFN 56
           SG     AL + G  V  +         D D +    +  L+            PD   +
Sbjct: 29  SGSQACRALREEGVSVVLVNSNPATIQTDPDMADVTYVEPLQADIIAKIIKKEKPDGILS 88

Query: 57  VLHGNFGEDGL----VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G  G +          LE ++I  T    +      +K R         VP    + 
Sbjct: 89  GMGGQTGLNLTAELAEMGALEGVKILGTPLKAIYEGEDREKFRDLMNRIGEPVPRSVIVS 148

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                  +  ++  P +I+P       G  +      +   +      +   Q+LIE+ V
Sbjct: 149 SLDQLEHAASVVGFPAIIRPAYTLGGAGGGIAYNLDELRRIVELGLGKSRIHQVLIEESV 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G +     +   + D         +     +          +   +  D +  ++  A 
Sbjct: 209 AGWKEIEFEVMRDANDTCITICGMENVDPMGVHTGESVVVAPI-LTLRDDEFHLLRNAAL 267

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
              +A+  +G     F F     +   +E+N  P ++  S     +   GY    +   +
Sbjct: 268 KIIRALDVQGGCNIQFAF-KGDDEYRVIEVN--PRVSRSS--ALASKATGYPIARVASKI 322


>gi|295397393|ref|ZP_06807482.1| pyruvate carboxylase [Aerococcus viridans ATCC 11563]
 gi|294974357|gb|EFG50095.1| pyruvate carboxylase [Aerococcus viridans ATCC 11563]
          Length = 1142

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/274 (15%), Positives = 95/274 (34%), Gaps = 19/274 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVD-RSVGLVLAHLKPDLAFNVLH 59
           +AV     S E EVS+   KA  S L     K  +  +D  S+  +   +  D      +
Sbjct: 29  VAV----YSQEDEVSVHRFKADESYLLSKDKKAVEAYLDIESIIQIAKDVNADAIHPG-Y 83

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G   E+       E   I +         +  DK+++++      +P+ P       +++
Sbjct: 84  GFLSENTEFARRCEEEGIKFIGPSHEILDMFGDKVKAREAAKKANIPLIPGSDGPVESLE 143

Query: 120 SQHLIS----PPYVIKPLKGGSSLGIIVIKKDQS----IPLDLLQSSSWNHGDQLLIEQY 171
                      P +IK   GG   G+ V++ +        L + +++      +  +E+Y
Sbjct: 144 EVFEFGKTAGYPIIIKAALGGGGRGMRVVRSEDEVAEQYRLAVSEATKAFGSGEAYVEKY 203

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V+G +     +       T     +        +     +  V    + +++   +   A
Sbjct: 204 VEGPKHIEVQIMADEQGNTMHLWERDCSVQRRHQKVVEVAPTVN---MSMELRNRICNSA 260

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                ++        +FL D      +++E+N +
Sbjct: 261 RDFLDSVDYANAGTVEFLLDGDD--FYFIEVNPR 292


>gi|254934027|gb|ACT87622.1| carbamoylphosphate synthetase [Micronoctua karsholti]
          Length = 976

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQAVKALHEEKIQTVLINPNIATVQTSKGLADKVYFLPITPDYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKAKIFEKYNVNVLGTPIKSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALTAARQIGYPVMARSAFSLGGLGSGFANNEDELRS--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIQHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|262283256|ref|ZP_06061023.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sp. 2_1_36FAA]
 gi|262261508|gb|EEY80207.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           sp. 2_1_36FAA]
          Length = 459

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 74/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGVKFIGPSGAIMDMMGDKINARAQMIKANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVFTAEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K      +  +   +   I 
Sbjct: 197 MYMERVIYPARHIEVQILADQHGHVVHLGERDCSLQRNNQKVLEEAPSVAIGKTLRQKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A Q++G       +FL+D    + +++E+N +
Sbjct: 257 D----AAVRAAQSVGYENAGTIEFLYDENKGEFYFMEMNTR 293


>gi|217032598|ref|ZP_03438087.1| hypothetical protein HPB128_159g24 [Helicobacter pylori B128]
 gi|298735914|ref|YP_003728439.1| biotin carboxylase [Helicobacter pylori B8]
 gi|216945734|gb|EEC24359.1| hypothetical protein HPB128_159g24 [Helicobacter pylori B128]
 gi|298355103|emb|CBI65975.1| biotin carboxylase [Helicobacter pylori B8]
          Length = 458

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 146 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 316 EMVSGLN---LIEWMIKIA 331


>gi|239827673|ref|YP_002950297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           WCH70]
 gi|239807966|gb|ACS25031.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. WCH70]
          Length = 450

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/277 (14%), Positives = 88/277 (31%), Gaps = 33/277 (11%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A ++ G +   +  + DR  + + LA            D   N              
Sbjct: 17  IIRACKELGIETVAVFSEADRDALHVQLADEAYCIGPTASKDSYLNFTNIMSVATLTGCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENAAFAELCRECNITFIGPSPEAITKMGIKDVARETMREAGVPIVPGSKG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      +   + I  P +IK   GG   GI V + +Q +   +  +            
Sbjct: 137 IIESVDEAIALANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFGNPG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            Y++        +    L  +   +         ++          P+    +  ++   
Sbjct: 197 VYIEKYIEDFRHVEIQVLADSYGNIIHLGERDCSIQRRLQKLVEEAPSPALDEETRQKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A +A+   G    +F++D   +K +++E+N +
Sbjct: 257 QAAVQAARAVNYTGAGTVEFIYDHNEKKFYFMEMNTR 293


>gi|86450141|gb|ABC96259.1| carbamoylphosphate synthetase [Heleodromia sp. JKM-2006]
          Length = 1293

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 96/318 (30%), Gaps = 41/318 (12%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------R 40
           GG S     E +    SG     AL++   +   I+ +                      
Sbjct: 355 GGFSIGQAGEFD---YSGSQGIKALKEEKIQTILINPNIATVQTSKGLGDKVYFLPFTPE 411

Query: 41  SVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            V  V+   +P+       G      G +     I E   +    + I +   + D+   
Sbjct: 412 YVEQVIKAERPNGVLLTFGGQTAINCGVEFDRAGIFEKYNVRIMGTPIQSIIETEDRKIF 471

Query: 97  KQVVSSC--GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            + V+     V    ++      +++   +  P + +       LG       + +   +
Sbjct: 472 AERVAKIGEKVAPSEAVYSVIEALEAAENLGYPVMARAAFSLGGLGSGFASNQEEL--KI 529

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
           L   +  H +QL+I++ + G                 I V   +       ++  +    
Sbjct: 530 LAKQALAHSNQLIIDKSLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVA 588

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
               +    Y  ++  A    +  G  G     +  +P S + + +E+N +  ++  S  
Sbjct: 589 PSQTLSNREYNILRTTAIKVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS-- 644

Query: 275 PEMAAYAGYSFRELLLWM 292
              +   GY    +   +
Sbjct: 645 ALASKATGYPLAYVAAKI 662


>gi|115918196|ref|XP_789322.2| PREDICTED: similar to carbamoyl-phosphate synthetase III; CPSase
           III [Strongylocentrotus purpuratus]
 gi|115974707|ref|XP_001194632.1| PREDICTED: similar to carbamoyl-phosphate synthetase III; CPSase
           III [Strongylocentrotus purpuratus]
          Length = 1503

 Score = 47.9 bits (112), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/334 (14%), Positives = 107/334 (32%), Gaps = 56/334 (16%)

Query: 3   VLM---GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------- 39
           VLM   GG+S     E +    SG     AL++   K   ++ +                
Sbjct: 425 VLMLGSGGLSIGQAGEFD---YSGSQAIKALKEEKVKTILMNPNIASVQTNEYGEKQADS 481

Query: 40  --------RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILAS 87
                     V  V+   KPD     + G      G +   + IL+   +    + I + 
Sbjct: 482 VYFVPITPEFVTDVIKREKPDGILLSMGGQTALNCGVELYKRGILQEYGVRVLGTPIESI 541

Query: 88  ALSMDKMRSKQ--VVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK 145
             + D+       +  +  +    ++      +D+   I  P +++       LG  V +
Sbjct: 542 MATEDRQTFNDKLMEINEKIAPSAAVETVSDAIDAARKIGYPVMVRAAYALGGLGSGVAE 601

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            ++++     +       +QLLIEQ + G                 + V   + +     
Sbjct: 602 DEEALRAIATRGL--ALSNQLLIEQSLLGW-KEVEYEVVRDASDNCVTVCNMENFDPLGV 658

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++  +        +    Y  ++  A    + +G  G     +  +P S +   +E+N +
Sbjct: 659 HTGDSIVVAPSQTLSNQEYHMLRETAIKCVRHLGIIGECNIQYALNPTSLEYCIIEVNAR 718

Query: 266 PGMTPVS-------IFPEMAAYA----GYSFREL 288
             ++  S        +P     A    G S  ++
Sbjct: 719 --LSRSSALASKATGYPLAFIAAKLALGISLPDI 750


>gi|332880006|ref|ZP_08447690.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332682002|gb|EGJ54915.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 950

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTILINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ + + ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAIQITEDREKFRVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQRMRNM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 76/240 (31%), Gaps = 10/240 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++ H KP+     L G        +     ++I  T    L  A       +    +
Sbjct: 635 IYDIIQHEKPEGVIVQLGGQTALKLAEKLDKYGIKIIGTSFQSLDLAEDRGSFSTLLKEN 694

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   P           +     +  P +++P       G+ ++   + +   ++      
Sbjct: 695 NIPYPRFGVAETADEALKLADELDFPLLVRPSYVLGGQGMKIVINKEELEAHVVDLLRKI 754

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++LL++ Y+DG IE     + D         +   +           ++  + P  + 
Sbjct: 755 PNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG---DSNATLPPFNLG 811

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + ++++        A+   G+    F        V+ +E N +   T     P ++  
Sbjct: 812 EFVLQQIKDHTHKIALALNTVGLINVQFAV--KDDVVYIIEANPRASRT----VPFISKA 865


>gi|297380261|gb|ADI35148.1| acetyl-CoA carboxylase, biotin carboxylase [Helicobacter pylori
           v225d]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|217979955|ref|YP_002364102.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocella silvestris
           BL2]
 gi|217505331|gb|ACK52740.1| acetyl-CoA carboxylase, biotin carboxylase [Methylocella silvestris
           BL2]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 65/217 (29%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH   G   E+     IL    I +         L  DK+ +K+     G+P  P    
Sbjct: 77  ALHPGYGFLSENARFAEILAEHHIVFVGPKPEHIRLMGDKIEAKRTALRLGIPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I        +   +  P ++K   GG   G+ V   ++ I   L  +            
Sbjct: 137 AITDEAEAKAAARELGYPVLVKAAAGGGGRGMKVSFSEEDIASTLETARMEAKSAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            Y++        +    L                L+          P+    +  ++   
Sbjct: 197 VYLEKYLEKPRHIEVQILGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPALNESQRKEIG 256

Query: 230 LAFLA-HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A  + +   G    +FL+     K +++E+N +
Sbjct: 257 EICAAAMRELQYAGAGTIEFLY--EDGKFYFIEMNTR 291


>gi|86144165|ref|ZP_01062502.1| acetyl-CoA carboxylase, biotin carboxylase [Leeuwenhoekiella
           blandensis MED217]
 gi|85829427|gb|EAQ47892.1| acetyl-CoA carboxylase, biotin carboxylase [Leeuwenhoekiella
           blandensis MED217]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/252 (12%), Positives = 76/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I +  ++ +  +
Sbjct: 47  EAVCIGPAPSSESYLKIANIMAAAEITNADAIHPG-YGFLSENARFSKICQEHDVKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                +   DK  +K  + + GVP  P     I               P ++K   GG  
Sbjct: 106 SPDMISKMGDKATAKATMKAAGVPCVPGSDGIIEDFESCERIAEETGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  +     +      +       + +    + +   +   +   V+GD++     ++
Sbjct: 166 KGMRAVWSKDDLRKAWDSARQEAAASFGNDGMYMEKLIEEPRHIEIQVVGDSNGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +  ++ +++   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDELREKMGAAAVRAAEFIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|289548562|ref|YP_003473550.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
 gi|289182179|gb|ADC89423.1| acetyl-CoA carboxylase, biotin carboxylase [Thermocrinis albus DSM
           14484]
          Length = 445

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/144 (16%), Positives = 48/144 (33%), Gaps = 2/144 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P VIK   GG   GI V+  ++ +   L  +             Y++   +   
Sbjct: 148 ANSIGYPVVIKAAGGGGGRGIRVVHNERELREKLPLAMQEAQVAFGDNRVYIEKYLINPK 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QRLAFLAHQAIG 239
            +    L      V         ++          P+    D  +++ +       +A+G
Sbjct: 208 HIEVQVLADRYGNVVCLGERECSIQRRYQKLVEEAPSVSITDQQRKILEEGVTEFCKALG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
             G    +FL D      +++E+N
Sbjct: 268 YVGAGTVEFLMD-QDGNFYFMEMN 290


>gi|302529953|ref|ZP_07282295.1| urea carboxylase [Streptomyces sp. AA4]
 gi|302438848|gb|EFL10664.1| urea carboxylase [Streptomyces sp. AA4]
          Length = 663

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP  GG   G+ ++ ++  +   +  +              ++    T  
Sbjct: 150 AAKVGYPLLLKPSAGGGGKGMRLVHEESELDAAIESARREAKSSFGDDTLLMERFVTTPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +  +    ++   A  A +++G
Sbjct: 210 HIEIQVLADAHGTVLHLGERECSLQRRHQKIIEEAPSVLLDEATRAKMGAAAAEAARSVG 269

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+    +  + F++E+N +
Sbjct: 270 YVGAGTVEFIMSAHNPDEFFFMEMNTR 296


>gi|297192986|ref|ZP_06910384.1| acetyl-CoA carboxylase [Streptomyces pristinaespiralis ATCC 25486]
 gi|197723392|gb|EDY67300.1| acetyl-CoA carboxylase [Streptomyces pristinaespiralis ATCC 25486]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 1/142 (0%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK + GG   GI V+   + +      + +           Y++        +
Sbjct: 150 EIGYPVIIKAVAGGGGRGITVVHDPKDLRDAYTATRASAQAVFKNSAVYMERYLRKTRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCR 241
               +                ++          P+  +  ++   +   A    +A+G R
Sbjct: 210 EVQVVCDDFGGAVHLGERDCSVQRRHQKLIEESPSAMVSPELRHRLGEAAVAGARAVGYR 269

Query: 242 GISRSDFLFDPLSRKVFWLEIN 263
           G    +FL +      +++E+N
Sbjct: 270 GAGTVEFLLEAGDEAFWFMEMN 291


>gi|154151324|ref|YP_001404942.1| pyruvate carboxylase subunit A [Candidatus Methanoregula boonei
           6A8]
 gi|153999876|gb|ABS56299.1| acetyl-CoA carboxylase, biotin carboxylase [Methanoregula boonei
           6A8]
          Length = 493

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 14/146 (9%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ ++  + ++   +  S             +++   +   
Sbjct: 150 AAEIGYPVIVKASAGGGGIGMQIVNDEAALEEAITGSMRIARSAFGDPTVFIEKYLVKPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+  +  ++   +   A    +   
Sbjct: 210 HIEFQVLADEHGHAVHLFDRECSIQRRHQKLVEEAPSAIMTDELRARMSSAALKVAEVSD 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL+   +   +++E+N +
Sbjct: 270 YTNAGSVEFLY--SNGNFYFMEMNTR 293


>gi|313206489|ref|YP_004045666.1| acetyl-CoA carboxylase, biotin carboxylase [Riemerella
           anatipestifer DSM 15868]
 gi|312445805|gb|ADQ82160.1| acetyl-CoA carboxylase, biotin carboxylase [Riemerella
           anatipestifer DSM 15868]
 gi|315023570|gb|EFT36574.1| acetyl-CoA carboxylase, biotin carboxylase [Riemerella
           anatipestifer RA-YM]
 gi|325336065|gb|ADZ12339.1| Biotin carboxylase [Riemerella anatipestifer RA-GD]
          Length = 451

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I +   I +  +         DK  +K  + + G+P  P     I   
Sbjct: 82  YGFLSENANFSRICQKNNIKFIGASPEQIEKMGDKATAKATMKAAGIPCVPGSDGLIGSY 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                    I  P +IK   GG   G+  + K + +      +       + +G   + +
Sbjct: 142 EEAAKIAEKIGYPVMIKATAGGGGKGMRAVWKAEELRNHWDSAVQEAIAAFGNGGMYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V GD       ++           + +   +       +  ++ +++  
Sbjct: 202 LIEEPRHIEIQVAGDQYGKACHLSERDCSIQ----RRNQKLTEETPSPFMTDELREKMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + IG  G+   +FL D      +++E+N +
Sbjct: 258 AAAKAAEYIGYEGVGTIEFLVDKHRN-FYFMEMNTR 292


>gi|297538732|ref|YP_003674501.1| hypothetical protein M301_1544 [Methylotenera sp. 301]
 gi|297258079|gb|ADI29924.1| protein of unknown function DUF201 [Methylotenera sp. 301]
          Length = 348

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/270 (15%), Positives = 93/270 (34%), Gaps = 21/270 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D +      +   + DL + +   + G    +  +    ++ +      ++ +   K  
Sbjct: 75  VDSNFEDNFKIMLTQVDLVWLIAPESNGTLLKLSEMCYEADVIFLGCEFDSTLIGTSKSL 134

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQH--------LISPPYVIKPLKGGSSLGIIVIKKD 147
           + + +    +   P+I  + F  D+           I   +V KP  G    GI V    
Sbjct: 135 AYEALDEAKIFTIPTIAGDDFVQDAAFSVAKSLQVPIHSRWVAKPEDGAGCDGIKVFDDL 194

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           Q +   L Q   +      +I+ Y  GI  +  ++  A           S          
Sbjct: 195 QKLMSWLKQDDRYL---NYIIQPYQQGIAASLSMLCRAG-----KGWLLSCNKQNISLNF 246

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI-GCRGISRSDFLFDPLSRKVFWLEINVQP 266
              +   +        ++  + LA    + +    G    D + D  + K++ +EIN  P
Sbjct: 247 DTFNLGGVMVNGMQAYWQRFETLARKVAKMLPDASGYIGVDVIVDAENDKIYVVEIN--P 304

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +T  S    +    G++  +++L  ++D+
Sbjct: 305 RLT-TSYV-GLREAIGHNPAKIILESIKDS 332


>gi|209964254|ref|YP_002297169.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum centenum
           SW]
 gi|209957720|gb|ACI98356.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum centenum
           SW]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 73/221 (33%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++      +         +  DK+ +K+ V   G+P  P    
Sbjct: 82  AIHPGIGFMAENAQFAEMVIEHGFTWIGPTPEHIRIMGDKVTAKKTVIDLGLPCVPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGD 164
            +            I  P +IK   GG   G+ V      +            +++ +  
Sbjct: 142 PVRDFEDASAVAEQIGYPILIKAAAGGGGKGMKVAWNRDQLREAYQLARGEARAAFGNDQ 201

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +   +   +   ++GD    V               +             + ++  
Sbjct: 202 VYIEKYLANPRHIEIQLLGDNYGTVVHFGERDCSVQ----RRHQKVIEEAPSPALTVEQR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +  LA    Q++G RG+   +FL+   + + +++E+N +
Sbjct: 258 EWIGALAARTAQSLGYRGVGTMEFLY--ENGQFYFIEMNTR 296


>gi|1814254|gb|AAB41857.1| D-Alanine:D-Alanine ligase [Streptococcus sanguinis SK1]
          Length = 197

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 1/147 (0%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +   + +  ++ P   KP   GSS+GI   +  Q+  L     S          ++    
Sbjct: 51  QKIQEIEEKLTYPVFTKPSNMGSSVGISKSETKQNCVLLWTWLSIRRRVLVEQGDRTARE 110

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
           IE+      D    +    V    FY YE KY     T  +PAKIP ++   +++ A  A
Sbjct: 111 IEVGLLGNVDVKSTLPGEVVKDVAFYDYEAKYIDNKITMDIPAKIPEEVVSLMRQNAEAA 170

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLE 261
            +A+G  G+SR DF +     +VF  E
Sbjct: 171 FRALGGLGLSRCDFFY-AEDGQVFLNE 196


>gi|327192708|gb|EGE59645.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) protein, large
           chain [Rhizobium etli CNPAF512]
          Length = 1162

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 87/335 (25%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T   ++ 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARLVAAEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G                ++     
Sbjct: 795 EGQLQTYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLTHAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +P+++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRSLPVELLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.9 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++LIE+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLIEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|298364398|gb|ADI79335.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 536

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQST 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L Q+ S     + +    L +
Sbjct: 213 EEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDGVYLEK 272

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 273 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 329 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|281424408|ref|ZP_06255321.1| carbamoyl-phosphate synthase, large subunit [Prevotella oris F0302]
 gi|281401677|gb|EFB32508.1| carbamoyl-phosphate synthase, large subunit [Prevotella oris F0302]
          Length = 1074

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+    PD    
Sbjct: 28  SGSQALKALHEEGVETVLINPNIATVQTSEGVADRIYFLPVQPYFVERVIQKEHPDGVLL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +     +     +    + + A   + D+    + ++   V    S  
Sbjct: 88  SFGGQTALNCGVELEQTGVFAKYGVKVLGTPVAAIMNTEDRELFVEQLNEINVKTIKSEA 147

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG      +  +    L   +++   Q+L+E+
Sbjct: 148 CENVEEARKAASSLGYPVIVRAAYALGGLGSGFADDETELNK--LCEKAFSFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCVTVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIVRHIGIVGECNVQYAFDPKSEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|255994596|ref|ZP_05427731.1| pyruvate carboxylase [Eubacterium saphenum ATCC 49989]
 gi|255993309|gb|EEU03398.1| pyruvate carboxylase [Eubacterium saphenum ATCC 49989]
          Length = 1144

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/291 (13%), Positives = 85/291 (29%), Gaps = 47/291 (16%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVL------------------AHLKPDLA 54
           E+S+      A A ++ G +   I  +     +                   A+L  D  
Sbjct: 15  EISIR----IARACKELGIRSIAIYSEEDKNSLFRTKADESYLIGEGKTPIGAYLAIDEI 70

Query: 55  F--------NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
                    + +H   G   E+       E   I +            DK++SK V    
Sbjct: 71  IEMAKAKGADAIHPGYGFLSENVEFAKACEDAGIVFIGPDYKMMGQLGDKIQSKLVAQEV 130

Query: 104 GVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--- 156
           GVP  P     I   +   +       P ++K   GG   G+ ++  ++ +         
Sbjct: 131 GVPTIPGVEEAIPSEKAAKEFAEKCGYPVMLKAAAGGGGRGMRIVHSEEELIPSFRSALS 190

Query: 157 --SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
               ++   D  + +       +   ++GD   ++  +            +         
Sbjct: 191 EAKKAFGIDDIFIEKYLESPKHIEVQILGDNYGNLVHLYERDCSIQ----RRHQKVVEFT 246

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +     K +   A    + +  R     +FL D      +++E+N +
Sbjct: 247 PALCLDDAKRKAICEDALKIAKFVNYRSAGTVEFLLDKHGNH-YFIEMNPR 296


>gi|190892717|ref|YP_001979259.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) protein, large
           chain [Rhizobium etli CIAT 652]
 gi|190697996|gb|ACE92081.1| carbamoyl-phosphate synthase (glutamine-hydrolyzing) protein, large
           chain [Rhizobium etli CIAT 652]
          Length = 1162

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 87/335 (25%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T   ++ 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARLVAAEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G                ++     
Sbjct: 795 EGQLQTYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLTHAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +P+++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRSLPVELLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.9 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++LIE+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLIEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|149003523|ref|ZP_01828397.1| biotin carboxylase subunit [Streptococcus pneumoniae SP14-BS69]
 gi|147758459|gb|EDK65458.1| biotin carboxylase subunit [Streptococcus pneumoniae SP14-BS69]
          Length = 412

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 34  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHVMDMMGDKINARAQMIKAGVPVIPGSDG 93

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K   +            +++ +G 
Sbjct: 94  EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPDDLVSAFETASSEAKANYGNGA 153

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 154 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 213

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A + +G       +FL D  S   +++E+N +
Sbjct: 214 A----AAVRAAEFVGYENAGTIEFLLDEASSNFYFMEMNTR 250


>gi|74227655|dbj|BAE35680.1| unnamed protein product [Mus musculus]
          Length = 494

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/186 (14%), Positives = 65/186 (34%), Gaps = 17/186 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDG 174
               I  P +IK ++GG   G+ +++ ++     L  +       +N    L+ +     
Sbjct: 124 HAGKIGYPVMIKAVRGGGGKGMRIVRSEREFQEQLESARREAKKSFNDDAMLIEKFVDTP 183

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V GD   +   +            +             I  ++ +++   A  A
Sbjct: 184 RHVEVQVFGDHHGNAVYLFERDCSVQ----RRHQKIIEEAPAPGINPEVRRKLGEAAVRA 239

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            +A+   G    +F+ D      +++E+N +  +       EM      +  +L+ W + 
Sbjct: 240 AKAVKYVGAGTVEFIMDSRHN-FYFMEMNTR--LQVEHPVTEM-----ITGTDLVEWQLR 291

Query: 295 DASCLR 300
            A+  +
Sbjct: 292 IAAGEK 297


>gi|33592052|ref|NP_879696.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|33571696|emb|CAE41191.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|332381468|gb|AEE66315.1| biotin carboxylase [Bordetella pertussis CS]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ VI+ +  +   L ++S            Y++       
Sbjct: 149 AREVGYPLLVKAAAGGGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        E  +   +      +             +  +  + +   A    +A+  
Sbjct: 209 HVEIQVFGDGEDVIHLGERECSIQRRHQKLLEESPSPVLSDETRQRMGEAACALARAVKY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    +F+ D  S + F++E+N +
Sbjct: 269 RGAGTLEFVMDGKSGEFFFIEMNTR 293


>gi|119717735|ref|YP_924700.1| pyruvate carboxylase [Nocardioides sp. JS614]
 gi|119538396|gb|ABL83013.1| pyruvate carboxylase [Nocardioides sp. JS614]
          Length = 1128

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 77/243 (31%), Gaps = 8/243 (3%)

Query: 28  DAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +D   ++  V      D  +   +G   E+  +        I +       
Sbjct: 53  ERGHPVRAYLDP-EAIVAVAIRAGADAVYPG-YGFLSENPALAEACANAGITFVGPTADV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIV 143
             L+ +K R+    ++ GVP   S+  +       +S   +  P  +K + GG   G+  
Sbjct: 111 LTLTGNKARAIAAATAAGVPTLASVEPSTDVDALVESAGELPYPLFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           +     +   +        G       +++   +    +    L   E  V         
Sbjct: 171 VDAPGQLREAVETCMREAEGAFGDPTVFIEQAVVDPRHIEVQVLADGEGHVMHLFERDCS 230

Query: 204 LKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++        + PA     ++   +   A    + IG R     +FL D       ++E+
Sbjct: 231 VQRRHQKVIEIAPAPNLDPELRDRICADAVRFAKEIGYRNAGTVEFLLDAK-GTYHFIEM 289

Query: 263 NVQ 265
           N +
Sbjct: 290 NPR 292


>gi|307710560|ref|ZP_07646996.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK564]
 gi|307618713|gb|EFN97853.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           SK564]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +      A  +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGHAMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHNSEEALIVAEKIGYPVMLKASAGGGGKGIRKVEKPEELVSAFETASSEAKANYGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++GD    V  +            K    + +  +   +  +I 
Sbjct: 197 MYIERVIYPARHIEVQILGDEHGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S   +++E+N +
Sbjct: 257 S----AAVRAAESVGYENAGTIEFLLDEASSNFYFMEMNTR 293


>gi|298364394|gb|ADI79333.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 535

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 152 YGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L Q+ S     + +    L +
Sbjct: 212 EEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSGAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 272 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|326315608|ref|YP_004233280.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
 gi|323372444|gb|ADX44713.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax avenae
           subsp. avenae ATCC 19860]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 ARTVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAAFGNPAVYMEKFLQNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  IP  + +++      A + IG
Sbjct: 209 HIEIQILADKHRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRKLIEKIGERCVAACKKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|269140487|ref|YP_003297188.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           tarda EIB202]
 gi|267986148|gb|ACY85977.1| acetyl-CoA carboxylase biotin carboxylase subunit [Edwardsiella
           tarda EIB202]
 gi|304560278|gb|ADM42942.1| Biotin carboxylase of acetyl-CoA carboxylase [Edwardsiella tarda
           FL6-60]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAQSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +L + +     +
Sbjct: 134 SDGPLDDDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLAQSILMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|217034475|ref|ZP_03439887.1| hypothetical protein HP9810_890g20 [Helicobacter pylori 98-10]
 gi|216943077|gb|EEC22554.1| hypothetical protein HP9810_890g20 [Helicobacter pylori 98-10]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLDTAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|158451279|gb|ABW39000.1| putative CAD trifunctional protein [Plagodis fervidaria]
          Length = 976

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + V++    V    +
Sbjct: 436 TFGGQTALNCGVELQKAGIFEKYNVSVLGTPIQSIVDTEDRKIFAEKVNAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEAIIAAKQIGYPVMARSAFSLGGLGSGFANNEEELRA--LXHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGVVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|149910107|ref|ZP_01898754.1| putative phosphoribosylglycinamide formyltransferase 2 [Moritella
           sp. PE36]
 gi|149806832|gb|EDM66794.1| putative phosphoribosylglycinamide formyltransferase 2 [Moritella
           sp. PE36]
          Length = 393

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +V  +D                       ++  V+   KPD     +
Sbjct: 22  GKEVTIEFQRLGVEVIAVDRYDNAPAMQVAHRSHTINMLDGDALRRVIELEKPDYVIPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L      +  +P   +  L       ++ + + +                 +
Sbjct: 82  EAIATDTLLELEQEGVNIVPTARATKLTMDREGIRLLAAETLQLPT-STYIFTDNKTEYL 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G  +I++D  I        +   G        ++G    
Sbjct: 141 AAVAEIGIPCVIKPVMSSSGKGQSIIREDDDIDQA--WDYAQEGGRAGAGRIIIEGFVKF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +             +          P  +   +  + Q ++    + +
Sbjct: 199 DFEITMLTISAVDGIHFCDPIGH--RQQDGDYRESWQPQIMCDVVLAKAQEVSAKVVKEL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         VF+ E++ +P   GM
Sbjct: 257 GGYGLFGVELFIRGKD--VFFSEVSPRPHDTGM 287


>gi|118465868|ref|YP_880903.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           avium 104]
 gi|118167155|gb|ABK68052.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           avium 104]
          Length = 671

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 97/318 (30%), Gaps = 51/318 (16%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFN-------- 56
               L   G +   +  D D +   VL                 L  D            
Sbjct: 17  VIRTLRRLGIRSVAVYSDPDAAARHVLEADEAVRLGPAAARDSYLNIDKVVETATRTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+    A  E   + +      A  +  DK+ +K  V+   VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPARAIQVMGDKITAKNAVAEFDVPVVPGVAE 136

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   + +   I  P +IKP  GG   G+ ++++   +   L+ +            
Sbjct: 137 PGLGDDELVAAADEIGYPVLIKPSAGGGGKGMRLVEEPGRLREALVGARREAASSFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++   L    +    L  T   V         L+          P+ +   +    + 
Sbjct: 197 LFLERFVLRPRHIEVQILADTHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPETRARIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAG 282
             A    +++   G    +F+       + F++E+N       P +T         A  G
Sbjct: 257 AAACNTARSVDYVGAGTVEFIVSADRPDEFFFMEMNTRLQVEHP-VTE--------AVTG 307

Query: 283 YSFRELLLWMVEDASCLR 300
               +L+ W +  A+  +
Sbjct: 308 L---DLVEWQLRVAAGEK 322


>gi|34398165|gb|AAQ67172.1| CAD [Chaetopsis sp. NCSU-99072190]
          Length = 1290

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/324 (12%), Positives = 98/324 (30%), Gaps = 42/324 (12%)

Query: 1   MAVL-MGGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------- 39
           + +L  GG+S     E +    SG     A+++   +   I+ +                
Sbjct: 347 VIILGSGGLSIGQAGEFD---YSGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYF 403

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALS 90
                  V  V+   +P+       G      G +     I     +    + I +   +
Sbjct: 404 LPLTPEYVEQVIKAERPNGVLLTFGGQTALNCGIELERNGIFAKYNVTILGTPIKSIIET 463

Query: 91  MDKMRSKQVVSSC--GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            D+    + +S     V    ++      +++   +  P + +       LG      + 
Sbjct: 464 EDRKIFAERISEIGEQVAPSEAVYSVEEAIEAAKRLGYPVMARAAFSLGGLGSGFANNEA 523

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +    L   +  H  QL+I++ + G                 I V   +       ++ 
Sbjct: 524 ELQT--LAHQALAHSSQLIIDKSLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTG 580

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            +        +    Y  ++  A    +  G  G     +  +P+S + + +E+N +  +
Sbjct: 581 ESIVVAPSQTLSNKEYNMLRNTALKVIRHFGVIGECNIQYALNPMSEEYYIIEVNAR--L 638

Query: 269 TPVSIFPEMAAYAGYSFRELLLWM 292
           +  S     +   GY    +   +
Sbjct: 639 SRSS--ALASKATGYPLAYVAAKL 660


>gi|317182337|dbj|BAJ60121.1| biotin carboxylase [Helicobacter pylori F57]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|294501033|ref|YP_003564733.1| biotin carboxylase [Bacillus megaterium QM B1551]
 gi|294350970|gb|ADE71299.1| biotin carboxylase [Bacillus megaterium QM B1551]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    K D      +G   E+             +        ++  DK+ ++  
Sbjct: 63  EELLRISHEEKVDAIHPG-YGFLSENSAFAKRAIDEGFCFIGPSPEIISMMGDKIAARAA 121

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P     +           LI  P ++K   GG  +G++    ++++     
Sbjct: 122 MKEAGVPVVPGSQGDVTSVEEACKVASLIGYPVMLKASGGGGGIGMVRCDNEEAVKQVYA 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + +           +++ +      +           V         ++  +       
Sbjct: 182 STKARAKAYFGQEGMFIEKLITNAKHIEVQVFGDQHGNVVHLFERDCSVQRRNQKVIEEA 241

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA    +   + +Q  A  A +AIG       +F+ D      ++LE+N +
Sbjct: 242 PALSLKESTRQAMQNQAVQAAKAIGYYNAGTVEFIVDE-DENFYFLEMNTR 291


>gi|260596124|ref|YP_003208695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cronobacter
           turicensis z3032]
 gi|260215301|emb|CBA27247.1| Biotin carboxylase [Cronobacter turicensis z3032]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIIAAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|152991385|ref|YP_001357107.1| biotin carboxylase [Nitratiruptor sp. SB155-2]
 gi|151423246|dbj|BAF70750.1| acetyl-CoA carboxylase, biotin carboxylase [Nitratiruptor sp.
           SB155-2]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 48/253 (18%), Positives = 86/253 (33%), Gaps = 25/253 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I  L  I +    I    L  DK ++K+V+ S GVPV P     I   
Sbjct: 84  YGFLSENQQFVEICNLHGIKFIGPSIEVMQLMSDKSKAKEVMKSAGVPVVPGSEGAIKNV 143

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ +  I    L + S           Y++ 
Sbjct: 144 EEAKKIAKEIGYPVILKAASGGGGKGMRVVEDESYIENAFLAAESEAISAFGDGTIYMEK 203

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    L  +   V         L+          PA    +   +++  +A  
Sbjct: 204 FIKKPRHIEVQLLGDSHGNVVHLGERDCSLQRRHQKMLEESPAIFLDEKTRQKLLDVAVK 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
           A +AI        +FL D   +  +++E+N +              +      +G    +
Sbjct: 264 AAKAIRYENAGTIEFLVD-NDQNFYFMEMNTR----------LQVEHPVSEMVSGI---D 309

Query: 288 LLLWMVEDASCLR 300
           ++ WM+  A   R
Sbjct: 310 IVEWMIRIAEGER 322


>gi|153801537|ref|ZP_01956123.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-3]
 gi|124122942|gb|EAY41685.1| acetyl-CoA carboxylase, biotin carboxylase [Vibrio cholerae MZO-3]
          Length = 335

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ V++ +  +   +  + +           Y++      
Sbjct: 36  HAKRIGYPVIIKASGGGGGRGMRVVRNEAELTKSIQMTRAEAKAAFNNDMVYMEKFLENP 95

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAI 238
             +    +   +            ++          PA    +  ++        A   I
Sbjct: 96  RHVEVQVIADGQGNAIHLAERDCSMQRRHQKVVEEAPAPGITEEMRKFIGERCTRACIEI 155

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G RG    +FL+   + + +++E+N +
Sbjct: 156 GYRGAGTFEFLY--ENGEFYFIEMNTR 180


>gi|46449660|gb|AAS96310.1| pyruvate carboxylase, putative [Desulfovibrio vulgaris str.
           Hildenborough]
          Length = 1225

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 95/254 (37%), Gaps = 10/254 (3%)

Query: 19  GKACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + A  L   G      +D+DR   + LA  +  +A +   G   ED    +      +
Sbjct: 46  AASAAQELLLLGADPRAYLDIDR--IISLAKQRGVVAIHPGWGFASEDDRFPSKCHEAGL 103

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLK 134
            +  S   A  L  +K++ +++    GVPV P          ++ LI     P ++K   
Sbjct: 104 TFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPGSEGAVDIPTARKLIDEIGLPIMLKAEG 163

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   GI  I+ +  +     ++S+           +V+    +   +    +       
Sbjct: 164 GGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIADMYGNA 223

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D     ++ +      + P+  P    ++ ++++  + +  + +G   ++  +FL  
Sbjct: 224 FAFDERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGYHSLATVEFLVT 283

Query: 252 PLSRKVFWLEINVQ 265
             S + + +E+N +
Sbjct: 284 A-SGEAYLIEVNTR 296


>gi|317180818|dbj|BAJ58604.1| biotin carboxylase [Helicobacter pylori F32]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 316 EMVSGLN---LIEWMIKIA 331


>gi|315282222|ref|ZP_07870676.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           marthii FSL S4-120]
 gi|313614124|gb|EFR87814.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           marthii FSL S4-120]
          Length = 454

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLVSGIHTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D      +++E+N +
Sbjct: 268 YSGAGTIEFIYDHHENNFYFMEMNTR 293


>gi|313903116|ref|ZP_07836510.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Thermaerobacter subterraneus DSM 13965]
 gi|313466618|gb|EFR62138.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Thermaerobacter subterraneus DSM 13965]
          Length = 451

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/278 (12%), Positives = 79/278 (28%), Gaps = 36/278 (12%)

Query: 22  CASALEDAGFKVSQI--DVDRS---------------------------VGLVLAHLKPD 52
              A  + G +   +  + D                             +    +    D
Sbjct: 17  IIRACRELGIRTVAVFSEPDEDALHVAMADEAYCIGPAPATRSYLHIPSLIEAASKAGVD 76

Query: 53  LAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
                 +G   E+    A+ +   I +      A      K  +++ +   GVPV P   
Sbjct: 77  AIHPG-YGFLSENAHFAAVCKTWGIEFIGPPPEAIETMGLKSLAREAMLRAGVPVVPGSE 135

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +      ++    I  P ++K   GG   GI V + +Q +   +  +           
Sbjct: 136 GTVEDEDEALEIARRIGYPVLVKAAAGGGGRGIRVARNEQELAQAMASARREAESTFGNG 195

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    +                ++          P   +  ++ + +
Sbjct: 196 AVYLEKFLEEPRHIEIQVMADKHGHTLHLGERECSVQRRRQKLIEEAPSPVMTPELRQRM 255

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +A+   G    +FL D      +++E+N +
Sbjct: 256 AEAAVRAAEAVEYVGAGTVEFLVD-RDGNFYFIEMNTR 292


>gi|295706382|ref|YP_003599457.1| biotin carboxylase [Bacillus megaterium DSM 319]
 gi|294804041|gb|ADF41107.1| biotin carboxylase [Bacillus megaterium DSM 319]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/231 (13%), Positives = 73/231 (31%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +    K D      +G   E+             +        ++  DK+ ++  
Sbjct: 63  EELLRISHEEKVDAIHPG-YGFLSENSAFAKRAIDEGFCFIGPSPEIISMMGDKIAARAA 121

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           +   GVPV P     +           LI  P ++K   GG  +G++    ++++     
Sbjct: 122 MKEAGVPVVPGSEGDVTSVEEACKVASLIGYPVMLKASGGGGGIGMVRCDNEEAVKQVYA 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + +           +++ +      +           V         ++  +       
Sbjct: 182 STKARAKAYFGQEGMFIEKLITNAKHIEVQVFGDQHGNVVHLFERDCSVQRRNQKVIEEA 241

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA    +   + +Q  A  A +AIG       +F+ D      ++LE+N +
Sbjct: 242 PALSLKESTRQAMQNQAVQAAKAIGYYNAGTVEFIVDE-DENFYFLEMNTR 291


>gi|224585178|ref|YP_002638977.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi C strain
           RKS4594]
 gi|224469706|gb|ACN47536.1| acetyl-CoA carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi C strain RKS4594]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|117921875|ref|YP_871067.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            ANA-3]
 gi|117614207|gb|ABK49661.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            ANA-3]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             S  VPV P            ++  + I  P ++K ++GG   GI V+K+ + +     +
Sbjct: 1065 QSQNVPVVPGSHGILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ELKKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|120602373|ref|YP_966773.1| pyruvate carboxylase [Desulfovibrio vulgaris DP4]
 gi|120562602|gb|ABM28346.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Desulfovibrio vulgaris DP4]
          Length = 1234

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 95/254 (37%), Gaps = 10/254 (3%)

Query: 19  GKACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + A  L   G      +D+DR   + LA  +  +A +   G   ED    +      +
Sbjct: 55  AASAAQELLLLGADPRAYLDIDR--IISLAKQRGVVAIHPGWGFASEDDRFPSKCHEAGL 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLK 134
            +  S   A  L  +K++ +++    GVPV P          ++ LI     P ++K   
Sbjct: 113 TFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPGSEGAVDIPTARKLIDEIGLPIMLKAEG 172

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   GI  I+ +  +     ++S+           +V+    +   +    +       
Sbjct: 173 GGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIADMYGNA 232

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D     ++ +      + P+  P    ++ ++++  + +  + +G   ++  +FL  
Sbjct: 233 FAFDERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGYHSLATVEFLVT 292

Query: 252 PLSRKVFWLEINVQ 265
             S + + +E+N +
Sbjct: 293 A-SGEAYLIEVNTR 305


>gi|116207076|ref|XP_001229347.1| hypothetical protein CHGG_02831 [Chaetomium globosum CBS 148.51]
 gi|88183428|gb|EAQ90896.1| hypothetical protein CHGG_02831 [Chaetomium globosum CBS 148.51]
          Length = 1170

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 115 SGSQALKALKEAGVASVLINPNIATIQTNHTLADEVYYLPVTPEYVEYVIQKEKPDGIFL 174

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +  VQ       E   +    + +    LS D+    + +    +P+  SI 
Sbjct: 175 SFGGQTALNLGVQMQKLGLFEKYGVRVLGTSVRTLELSEDRDLFAKALDEINIPIAKSIA 234

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++ + I  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 235 VNTVDEALEAANKIGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 292

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + Y  ++  
Sbjct: 293 SLKGW-KEVEYEVVRDANNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 351

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 352 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 403


>gi|114048815|ref|YP_739365.1| carbamoyl-phosphate synthase L chain, ATP-binding protein [Shewanella
            sp. MR-7]
 gi|113890257|gb|ABI44308.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Shewanella
            sp. MR-7]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             S  VPV P            ++  + I  P ++K ++GG   GI V+K+ + +     +
Sbjct: 1065 QSQNVPVVPGSHGILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ELKKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|326384229|ref|ZP_08205911.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
 gi|326197094|gb|EGD54286.1| carbamoyl-phosphate synthase L chain ATP--binding protein [Gordonia
           neofelifaecis NRRL B-59395]
          Length = 660

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/144 (17%), Positives = 49/144 (34%), Gaps = 5/144 (3%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            P +IK   GG   G+ +++    +        + +    GD  +  +          V 
Sbjct: 138 LPLLIKASAGGGGRGMRIVRDLAELSDAVAAARREAESAFGDPTVFCEPYVERGHHIEVQ 197

Query: 183 -GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
                         +        +     +   L  ++  D+ + +   A  A ++IG R
Sbjct: 198 VMADDHGEVWAVGERECSIQRRHQKVVEEAPAPLVERVGGDMRERLFAAARKAVESIGYR 257

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G    +FL D  + K F+LE N +
Sbjct: 258 GAGTVEFLADE-NGKFFFLETNTR 280


>gi|311070461|ref|YP_003975384.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
 gi|310870978|gb|ADP34453.1| hypothetical protein BATR1942_17680 [Bacillus atrophaeus 1942]
          Length = 416

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/214 (18%), Positives = 81/214 (37%), Gaps = 11/214 (5%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           +  +K  ++QV+    +       ++         +  P V+KP+ G SS G++ +    
Sbjct: 109 ICRNKYATRQVLKRHQLNTPFFYEISSAADIDAGGLRYPLVVKPINGFSSQGVVRVNDQD 168

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-----FYSYE 203
            +   + +  + N GD     Q   GI +   + G   +  T     K       +    
Sbjct: 169 QLKEAISKVEAINQGDLGKFIQGNSGIIVEQFIDGPEFVIETMSIQGKVHVLSIGYKGDC 228

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEI 262
                    ++ PA++  +    +      A  A+G   G + ++   D  S K F +E+
Sbjct: 229 KGPFFEEGVYIAPARLEEESRLAITEEVRKAVSALGIDNGAAHTELRLD-QSGKPFVIEV 287

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
             + G + +S F  +    G +F EL   ++ +A
Sbjct: 288 APRIGGSGISHF-IVKESTGVNFMEL---IIRNA 317


>gi|254933933|gb|ACT87575.1| carbamoylphosphate synthetase [Alucita sp. JCR-2009]
          Length = 727

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILV 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +LE   +    + I +   + D+    + +SS    V    +
Sbjct: 191 TFGGQTALNCGVELQKSNVLEKYNVNVLGTPIQSIVDTEDRKIFAEKISSIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 251 VHSVEEAVAAAVQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHHALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|304569711|ref|YP_011051.2| pyruvate carboxylase [Desulfovibrio vulgaris str. Hildenborough]
 gi|311233772|gb|ADP86626.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Desulfovibrio vulgaris RCH1]
          Length = 1234

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 95/254 (37%), Gaps = 10/254 (3%)

Query: 19  GKACASALEDAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
             + A  L   G      +D+DR   + LA  +  +A +   G   ED    +      +
Sbjct: 55  AASAAQELLLLGADPRAYLDIDR--IISLAKQRGVVAIHPGWGFASEDDRFPSKCHEAGL 112

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLK 134
            +  S   A  L  +K++ +++    GVPV P          ++ LI     P ++K   
Sbjct: 113 TFIGSTAEAMNLLGNKVQVRKLARKLGVPVVPGSEGAVDIPTARKLIDEIGLPIMLKAEG 172

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   GI  I+ +  +     ++S+           +V+    +   +    +       
Sbjct: 173 GGGGRGIFAIRDESELDDAFFKASTMAQASFGNPRLFVEKYLESVRHIEIQVIADMYGNA 232

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
              D     ++ +      + P+  P    ++ ++++  + +  + +G   ++  +FL  
Sbjct: 233 FAFDERDCSIQRNHQKLIEITPSPWPGITPELREKLKEYSKMLVREVGYHSLATVEFLVT 292

Query: 252 PLSRKVFWLEINVQ 265
             S + + +E+N +
Sbjct: 293 A-SGEAYLIEVNTR 305


>gi|193290652|gb|ACF17634.1| putative acetyl co-enzyme A carboxylase biotin carboxylase subunit
           [Capsicum annuum]
          Length = 536

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  ++  + + GVP  P     +   
Sbjct: 151 YGFLSENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARDTMKNAGVPTVPGSDGLLQST 210

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +     I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 211 EEGVRLAEEIGYPVMIKATAGGGGRGMRLAKEPGEFVKLLQQAKSEAAAAFGNDGVYLEK 270

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
             ++   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 271 YIINPRHIEFQVLADKYGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 326

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 327 AAVAAAASIGYVGVGTIEFLLDER-GSFYFMEMNTR 361


>gi|193697813|ref|XP_001943635.1| PREDICTED: CAD protein-like [Acyrthosiphon pisum]
          Length = 2235

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +       I+ +                       V  V+   +PD    
Sbjct: 416 SGSQAIKALREENIVTILINPNIATVQTSLGLANKVYFLPLELDFVSQVIQSERPDGILL 475

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     ILE   I    + I     + D+ +    V      V     
Sbjct: 476 TFGGQTALNCGIELKKSGILEKYNIKVLGTPIETIIATEDRKQFSDRVVEIGERVAPSSV 535

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P +++       LG      +  +   +L    + H +Q+++++
Sbjct: 536 VTSYEEALEAVKTLGYPLLVRSAFSLGGLGSGFANNESELN--VLAKQCFTHSNQMILDK 593

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y +++  
Sbjct: 594 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNSEYNKLRTT 652

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +     S + F +E+N +  ++  S     +   GY    +  
Sbjct: 653 AIKVVRHLGVVGECNIQYALSTTSDEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 708

Query: 291 WM 292
            +
Sbjct: 709 KL 710


>gi|160946929|ref|ZP_02094132.1| hypothetical protein PEPMIC_00890 [Parvimonas micra ATCC 33270]
 gi|158447313|gb|EDP24308.1| hypothetical protein PEPMIC_00890 [Parvimonas micra ATCC 33270]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 73/248 (29%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I  D  +   L              D       G   E+     ++E   + +   
Sbjct: 47  EAICIGPDNPLQSYLNMNNIIQAACSSGCDAIHPGF-GFLSENPKFAKLVEECGLIFVGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSS 138
                ++  DK  ++  + + GVPV P        ++        I  P +IK   GG  
Sbjct: 106 NHKLISMLGDKNEARLQMINIGVPVIPGTKNVIENVEEGLLEAEKIGYPVIIKASSGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ ++        +   + S           Y++        +    L      V    
Sbjct: 166 KGMRIVWDSSDFIENFNTAKSEAKVSFNDDRVYIEKYIELPKHIEVQILGDMFGNVIHLY 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P  +    I +++   A    + +        +FL D  S   
Sbjct: 226 ERDCSMQRKNQKILEEAPCHVLDKKIREKLITDAVKICKHLKYYSAGTIEFLVD-KSGNY 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|75906739|ref|YP_321035.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anabaena
           variabilis ATCC 29413]
 gi|75700464|gb|ABA20140.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha [Anabaena
           variabilis ATCC 29413]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +  ++    I  P +IK   GG   G+ +++         L +            
Sbjct: 138 LVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++  +       P+     D+ +++ 
Sbjct: 198 VYIEKFIERPRHIEFQILADSYGNVIHLGERDCSIQRRNQKLLEEAPSPALDSDLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A Q I   G    +FL D  S + +++E+N +
Sbjct: 258 QAAVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNTR 293


>gi|50285917|ref|XP_445387.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49524691|emb|CAG58293.1| unnamed protein product [Candida glabrata]
          Length = 1113

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL+++  +   I+ +                       +  ++   +PD    
Sbjct: 49  SGSQAIKALKESKIETILINPNIATNQTSHSLADKIYYLPVTPEYITYIIEKDRPDAILL 108

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G       IL    +    + I     S D+      +    +P+  SI 
Sbjct: 109 TFGGQTALNCGIHLDETGILAKFNVKVLGTPIKTLITSEDRDLFASALKEIDIPIAESIA 168

Query: 113 VNR--FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG       + +     QS S     Q+L+E+
Sbjct: 169 CENIDDVLSAASTIGYPVIIRSAYALGGLGSGFANNPEELKELASQSLSLAP--QVLVEK 226

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + +  ++  
Sbjct: 227 SLRGW-KEVEYEVVRDRENNCITVCNMENFDPLGVHTGDSIVFAPSQTLSDEEFHMLRSA 285

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P S     +E+N +  ++  S     +   GY   
Sbjct: 286 AIKIIRHLGVVGECNVQYALSPNSLDYRVIEVNAR--LSRSS--ALASKATGYPLA 337



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 40/287 (13%), Positives = 96/287 (33%), Gaps = 28/287 (9%)

Query: 23  ASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV------------LHGN 61
           A AL +  +K   I         D D    L    L  +   ++            + G 
Sbjct: 605 AKALREQNYKTIMINYNPETVSTDFDEVDRLYFEELSYERVLDIYELEQSEGCIVSMGGQ 664

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
             ++  +       +I  T    + +A +  K  S     + G P    +          
Sbjct: 665 LPQNIALSLYEYGCKILGTSPKDIDNAENRHKFSSILDSINVGQPEWKELTSVEEAKTFA 724

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + +S P +I+P    S   + V+  +  +   L  +S  +    +++ +++ G +     
Sbjct: 725 NKVSYPVLIRPSYVLSGAAMSVVNNEHELEDKLTLASDVSPDHPVVMSKFIQGAQEIDV- 783

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
               + +   +    S+       +S   +  + P  +  ++  +++ +A    +A    
Sbjct: 784 -DAVACNGELLVHAISEHVEDAGVHSGDATLILPPQHLSENVKSQLKTIAKKVAKAWNIT 842

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           G      +       +  +E N++      S FP ++   G +F E+
Sbjct: 843 GPFNMQVI-KAGENDLKVIECNIR---ASRS-FPFVSKVLGVNFIEV 884


>gi|71743950|ref|XP_803440.1| hypothetical protein [Trypanosoma brucei TREU927]
 gi|70830770|gb|EAN76275.1| hypothetical protein, conserved [Trypanosoma brucei]
          Length = 382

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +S P +IK + G SS+G+    K      L    +         L+E++V G E T  V 
Sbjct: 31  LSFPLIIKHVSGYSSVGMDKSCKVYDMDSLHSRVTRFIEQYQIALVEEFVVGDEATILVC 90

Query: 183 GDASLDVTEIAVPKSDFY-----SYELKYSSLNSTHVLPAKIPLD----IYKEVQRLAFL 233
            D++        P           ++  +    +   +  ++  +    + + +      
Sbjct: 91  ADSTQPDGIRVFPPVMVQFPEGEDFKHFHLKWETYEGMEWRLMPEDDPALSQVLSTARTS 150

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
               +G  G  R D   D  +  V +LEIN   G+    ++P
Sbjct: 151 FMHMMGGVGYGRVDVRIDRSTHDVVFLEINPNCGV----MYP 188


>gi|330815486|ref|YP_004359191.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia gladioli
           BSR3]
 gi|327367879|gb|AEA59235.1| Acetyl-CoA carboxylase, biotin carboxylase [Burkholderia gladioli
           BSR3]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/281 (12%), Positives = 77/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +  +         L  +                          
Sbjct: 14  ALRIQRACRELGVKTVVVYSEADKEAKYVKLADEAVCIGPAPSNLSYLNMPALISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +KQ +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEQSGFTFIGPRPDTIRMMGDKVSAKQAMIRTGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +  +     +  P +IK   GG   G+ V+  + ++   +  +        
Sbjct: 134 SEGALPEDPKEIVKIARAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVNMTREEAGRAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
              + Y++        +    L                ++          PA  I   + 
Sbjct: 194 GNPQVYMEKYLENPRHIEIQVLADAHKNALWLGERDCSMQRRHQKVIEEAPAPGIARRLI 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +      A + +G  G    +FL+   + + +++E+N +
Sbjct: 254 DRIGDRCADACKKMGYLGAGTFEFLY--ENNEFYFIEMNTR 292


>gi|298364400|gb|ADI79336.1| chloroplast biotin carboxylase [Brassica rapa]
          Length = 536

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLKST 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L  + S     + +    L +
Sbjct: 213 EEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDGVYLEK 272

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 273 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 329 AAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|298364396|gb|ADI79334.1| chloroplast biotin carboxylase [Brassica napus]
          Length = 536

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLKST 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L  + S     + +    L +
Sbjct: 213 EEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDGVYLEK 272

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 273 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 329 AAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|298364390|gb|ADI79331.1| chloroplast biotin carboxylase [Brassica oleracea]
          Length = 535

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 152 YGFLSENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLKST 211

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L  + S     + +    L +
Sbjct: 212 EEGVKLANEIGFPVMIKATAGGGGRGMRLANEPSEFVKLLQAAKSEAAAAFGNDGVYLEK 271

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 272 YVQNPRHIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 327

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 328 AAVAAAASIGYVGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|227115089|ref|ZP_03828745.1| urea amidolyase [Pectobacterium carotovorum subsp. brasiliensis
           PBR1692]
          Length = 1204

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      +++                    +++       
Sbjct: 147 AEDIGYPVMLKSTAGGGGIGLTRCANAEALQAAWESVRRLGEQFFSDAGVFLERCIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D     +   A    + + 
Sbjct: 207 HVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +F++D      F+LE+N +
Sbjct: 267 YRSAGTVEFIYDAERDAFFFLEVNTR 292


>gi|148557591|ref|YP_001265173.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas wittichii
           RW1]
 gi|148502781|gb|ABQ71035.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingomonas wittichii
           RW1]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+ ++  +   + Q+SS           Y++       
Sbjct: 149 AAQIGYPVLIKAASGGGGRGMKVVPEETQLETLMAQASSEAKAAFGDGTVYMEKYLADPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P   I      E+  +   A   +G
Sbjct: 209 HIEFQVFGDGNGNAIHVGERDCSLQRRHQKVLEEAPSPVISHAQRAEMGTIVARAMADMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTIEFLY--ENGEFYFIEMNTR 292


>gi|110597682|ref|ZP_01385967.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium ferrooxidans
           DSM 13031]
 gi|110340802|gb|EAT59279.1| acetyl-CoA carboxylase, biotin carboxylase [Chlorobium ferrooxidans
           DSM 13031]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IKP  GG   G+ V+ ++  +   L  + S           Y++       
Sbjct: 148 AKKTGYPVIIKPTAGGGGKGMRVVTEESQLEKALNTARSEAEQAFGNSGVYIEKYLENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          P+    D + K++   A  A +AI 
Sbjct: 208 HVEIQILSDQHGNTIHLGERDCTVQRRHQKLIEETPSPAVDDALRKKMGDAAVAAARAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTIEFLLDKHRD-FYFMEMNTR 292


>gi|34496440|ref|NP_900655.1| acetyl-CoA carboxylase biotin carboxylase subunit [Chromobacterium
           violaceum ATCC 12472]
 gi|34102293|gb|AAQ58659.1| biotin carboxylase protein [Chromobacterium violaceum ATCC 12472]
          Length = 451

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 68/213 (31%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         +  DK+ +K  +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEQSGFVFIGPRPDTIRMMGDKVSAKHAMIEAGVPCVPGSDGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +     I  P +IK   GG   G+ V+  + ++   +  + +           Y++
Sbjct: 142 PAEIVKIAKKIGFPVIIKAAGGGGGRGMRVVHTEGALINSVQMTRTEAGAAFGNPTVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF- 232
                   +    L                ++          PA    D  ++    A  
Sbjct: 202 KFLELPRHIEIQILADEYGNAIYLGERDCSMQRRHQKIIEEAPAPGITDKQRQKIGEACA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + +++E+N +
Sbjct: 262 EACRRIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|332527823|ref|ZP_08403861.1| phosphoribosylglycinamide formyltransferase 2 [Rubrivivax
           benzoatilyticus JA2]
 gi|332112218|gb|EGJ12194.1| phosphoribosylglycinamide formyltransferase 2 [Rubrivivax
           benzoatilyticus JA2]
          Length = 401

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/282 (12%), Positives = 79/282 (28%), Gaps = 28/282 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +       +  +L   KP L    +
Sbjct: 25  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPEQLRALLEAEKPQLVVPEI 84

Query: 59  HGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                     ++A   +  IP   +  L       +  + + +     P      +    
Sbjct: 85  EAIATPVLEQLEAEGRIRCIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLEELQ 144

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS--SWNHGDQLLIEQYVDGI 175
                 I  P V+KP+   S  G   I     +      +       G ++++E ++D  
Sbjct: 145 AAIDGGIGYPCVVKPVMSSSGKGQSKIDGPDGVKKAWDYAMAGGRVAGGRIIVEGFIDFD 204

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
                +   A     +      D   +  + S        P  +        + +A    
Sbjct: 205 YEITQLTVRALGADGQPQTHFCDPIGHV-QVSGDYVESWQPHPMSPAALAASRDIAKKIT 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             +G  G+   +        +V++ E++ +P      +    
Sbjct: 264 DDLGGLGLFGVELFV--KGDQVWFSEVSPRP--HDTGMVTMA 301


>gi|317123062|ref|YP_004103065.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Thermaerobacter marianensis DSM 12885]
 gi|315593042|gb|ADU52338.1| biotin carboxylase; acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Thermaerobacter marianensis DSM 12885]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/230 (14%), Positives = 72/230 (31%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+    +    D      +G   E+    A+ +   I +      A      K  +++ +
Sbjct: 65  SLIEAASKAGVDAIHPG-YGFLSENAHFAAVCKTWGIEFIGPPPEAIETMGLKSLAREAM 123

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              GVPV P     +      +     I  P ++K   GG   GI V + +Q +   L  
Sbjct: 124 QRAGVPVVPGSEGTVEDEDEALRIAREIGYPVLVKAAAGGGGRGIRVARDEQELVQALAS 183

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +             Y++        +    +                ++          P
Sbjct: 184 ARREAESTFGNGAVYLEKFLEEPRHIEIQVIADKHGHTLHLGERECSVQRRRQKLIEEAP 243

Query: 217 -AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +  ++ + +   A  A +A+   G    +FL D      +++E+N +
Sbjct: 244 SPVMTPELRQRMAEAAVRAAEAVDYVGAGTVEFLVD-RDGNFYFIEMNTR 292


>gi|297243330|ref|ZP_06927264.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis AMD]
 gi|296888737|gb|EFH27475.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis AMD]
          Length = 634

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 9/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  ++     D      +G   E       +    + +      A     DK+ +++V
Sbjct: 67  DAILDIIKRSGTDAVHPG-YGFLSEVASFAKKVNDAGVIWIGPRPEALIDLGDKITARRV 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                VP  P I      +            P ++K   GG   GI V++ D  +    +
Sbjct: 126 AVRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMMKRTDGGGGRGITVVRNDDELRGFYM 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   GD    E +++        +                     ++  +       
Sbjct: 186 NHDALQGGDLD--EYFIERFIDKARHVETQCGRDAHGNFTVYSTRDCSVQRRNQKLVEEA 243

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA     D   ++ R +    +A+   G+   +++      KV++LE+N +
Sbjct: 244 PAPFLTDDEKDQLYRYSRNLFEAVDYVGLGTCEYMVTSQ-HKVYFLEVNPR 293


>gi|283783640|ref|YP_003374394.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis 409-05]
 gi|298252902|ref|ZP_06976696.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis 5-1]
 gi|283441940|gb|ADB14406.1| carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Gardnerella vaginalis 409-05]
 gi|297533266|gb|EFH72150.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Gardnerella
           vaginalis 5-1]
          Length = 637

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/231 (14%), Positives = 73/231 (31%), Gaps = 9/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  ++     D      +G   E       +    + +      A     DK+ +++V
Sbjct: 67  DAILDIIKRSGTDAVHPG-YGFLSEVASFAKKVNDAGVIWIGPRPEALIDLGDKITARRV 125

Query: 100 VSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                VP  P I      +            P ++K   GG   GI V++ D  +    +
Sbjct: 126 AVRAKVPPVPGISEPVKDIRELLTFAQTHGYPVMMKRTDGGGGRGITVVRNDDELRGFYM 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
              +   GD    E +++        +                     ++  +       
Sbjct: 186 NHDALQGGDLD--EYFIERFIDKARHVETQCGRDAHGNFTVYSTRDCSVQRRNQKLVEEA 243

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA     D   ++ R +    +A+   G+   +++      KV++LE+N +
Sbjct: 244 PAPFLTDDEKDQLYRYSRNLFEAVDYVGLGTCEYMVTSQ-HKVYFLEVNPR 293


>gi|154489807|ref|ZP_02030068.1| hypothetical protein PARMER_00035 [Parabacteroides merdae ATCC
           43184]
 gi|154089532|gb|EDN88576.1| hypothetical protein PARMER_00035 [Parabacteroides merdae ATCC
           43184]
          Length = 1072

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 94/307 (30%), Gaps = 39/307 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALKEEGISTVLLNPNIATIQTSEGVADKVYFLPITPYFVEEVIKKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC--PS 110
              G      G +      L    +    + + A   + D+    + +    V      +
Sbjct: 88  AFGGQTALNCGTELYTSGTLAKYGVKVLGTSVEAIMYTEDRDLFVKKLDEIAVKTPVSHA 147

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P +I+       +G  + K +  +    L  S++ +  Q+L+E+
Sbjct: 148 VGNLEDAVKAAYEIGFPVMIRSAYALGGMGSGICKDEAELRT--LAESAFAYSPQVLVEE 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D     V   +     +            +    ++   ++ L
Sbjct: 206 SLKGWKEIEFEVIRDKNDHCFTVVSMENVDPLGVHTGESIVVAPTCSLTDKEL-DLLKEL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA---- 281
           +    + +G  G     + F+  +     +E+N          +  S +P     A    
Sbjct: 265 SIKTIRHLGIVGECNIQYAFNSDTCDYRVIEVNARLSRSSALASKASGYPLAFVAAKLAL 324

Query: 282 GYSFREL 288
           GYS  E+
Sbjct: 325 GYSLDEI 331


>gi|94676519|ref|YP_588530.1| acetyl-CoA carboxylase biotin carboxylase subunit [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
 gi|94219669|gb|ABF13828.1| acetyl-CoA carboxylase, biotin carboxylase [Baumannia
           cicadellinicola str. Hc (Homalodisca coagulata)]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 72/217 (33%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         L  DK+ + + +   G+P  P         
Sbjct: 82  YGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAIKTMKKNGIPCIPGSDGPVSED 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLI 168
                    LI  P +IK   GG   G+ ++  DQ +   +  +       +++    + 
Sbjct: 142 MHKNHAIAKLIGYPVIIKASGGGGGRGMRIVCNDQDLESSIRITRAEAKAVFSNDIVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++ D   +V  +A           +             I  ++ + + 
Sbjct: 202 KYLENPRHIEIQILADNQGNVIYLADRDCSMQ----RRHQKVLEEAPAPGITDELRRYIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A   IG RG    +FL+     + F++E+N +
Sbjct: 258 ERCAKACIEIGYRGAGTFEFLY--EKGEFFFIEMNTR 292


>gi|71735342|ref|YP_274653.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|71555895|gb|AAZ35106.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++Q +   +  +           E Y++       
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTGEEARRAFGNPELYIEKFLGQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  ++   V     LA + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGIDPELMARVGERCALACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|56964233|ref|YP_175964.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus clausii
           KSM-K16]
 gi|56910476|dbj|BAD65003.1| acetyl-CoA carboxylase [Bacillus clausii KSM-K16]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/151 (14%), Positives = 49/151 (32%), Gaps = 1/151 (0%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P +IK   GG   GI V + ++ +   +  +             Y++  
Sbjct: 143 DAKQIARDIGYPVIIKATAGGGGKGIRVARNEKELESGIKVTQQEAETAFGNPGVYLEKY 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLA 234
                 +    L      V         ++          P+    +  ++   R A  A
Sbjct: 203 IEDFRHVEIQVLADNHGNVIHLGERDCSIQRRLQKLLEESPSPAITEEKRQEMGRAAVEA 262

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A+   G    +F++D  +   +++E+N +
Sbjct: 263 ARAVQYSGAGTVEFIYDHNTGDFYFMEMNTR 293


>gi|317012857|gb|ADU83465.1| biotin carboxylase [Helicobacter pylori Lithuania75]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|296104972|ref|YP_003615118.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
 gi|295059431|gb|ADF64169.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter
           cloacae subsp. cloacae ATCC 13047]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|254934021|gb|ACT87619.1| carbamoylphosphate synthetase [Melittia cucurbitae]
          Length = 977

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKGKVFEKYNVTVLGTPIQSIIDTEDRKAFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 496 VSSIDEAVAAALQIGYPVMARAAFSLGGLGSGFANNEEELRS--LAHQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRET 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPSSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|240171582|ref|ZP_04750241.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1
           [Mycobacterium kansasii ATCC 12478]
          Length = 657

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 50/318 (15%), Positives = 94/318 (29%), Gaps = 51/318 (16%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNV------- 57
               L   G +   +  D D     VL                 L  D            
Sbjct: 17  VIRTLRRLGIRSVAVYSDPDAEARHVLEADQAVRLGPAAARESYLDIDKVLEAAARTGSQ 76

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 77  AIHPGYGFLSENADFAAACERAGVVFLGPPTRAIEVMGDKITAKNAVAAFDVPVVPGVAK 136

Query: 114 NRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                D        +  P +IKP  GG   G+ +++    +   L+ +            
Sbjct: 137 PGLNDDDLVAAADEVGYPVLIKPSAGGGGKGMRLVEDPARLRDALVSARREAGSSFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++   L    +    L  T   V         L+          P+ +        + 
Sbjct: 197 LFLERFILRPRHIEVQVLADTHGNVVHLGERECSLQRRHQKVIEEAPSALLDTQTRARIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAG 282
             A    +++   G    +F+       + F++E+N       P +T         A  G
Sbjct: 257 AAACNTARSVDYVGAGTVEFIVSAERADEFFFMEMNTRLQVEHP-VTE--------AVTG 307

Query: 283 YSFRELLLWMVEDASCLR 300
               +L+ W +  A+  +
Sbjct: 308 L---DLVEWQLRVAAGEK 322


>gi|226951049|ref|YP_002806140.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A2 str. Kyoto]
 gi|226844446|gb|ACO87112.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A2 str. Kyoto]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|163796882|ref|ZP_02190839.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [alpha
           proteobacterium BAL199]
 gi|159177871|gb|EDP62420.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [alpha
           proteobacterium BAL199]
          Length = 662

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/286 (16%), Positives = 85/286 (29%), Gaps = 37/286 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVL--------H---GNFGEDGLVQAILELLEIPYT 80
           +  +I    S    L   K D              H   G   E       LE   I + 
Sbjct: 47  EAVRIGPAASAESYL---KIDAIIEACKQTGAQAVHPGFGFLSERAAFCEALEAAGIVFI 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGG 136
             G  A     DK+ SK++    GV   P  L    + +    I+     P +IK   GG
Sbjct: 104 GPGKSAIEAMGDKITSKKIAHEAGVSTVPGFLGVIESPEHAAKIAGEIGYPVMIKASAGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ +   +  +   +  + +           +++        +    +      V  
Sbjct: 164 GGKGMRIANSEADLKDGVRGAMNEARSSFGDDRVFIEKFIEQPRHIEIQVMADGHGNVVH 223

Query: 197 SDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          P   I  +    +   A    + +G R     +F+ D  ++
Sbjct: 224 LGERECSIQRRHQKVIEEAPSPFIDAETRAAMGAQAVALAKQVGYRSAGTVEFIADA-NK 282

Query: 256 KVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           K ++LE+N       P         EM    G    +L+  M+  A
Sbjct: 283 KFYFLEMNTRLQVEHP-------VTEM--VTGL---DLVELMIRVA 316


>gi|152972178|ref|YP_001337324.1| acetyl-CoA carboxylase biotin carboxylase subunit [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150957027|gb|ABR79057.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp. pneumoniae MGH
           78578]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|307544770|ref|YP_003897249.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Halomonas
           elongata DSM 2581]
 gi|307216794|emb|CBV42064.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Halomonas
           elongata DSM 2581]
          Length = 446

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  +  +   +  + +  H        Y++       
Sbjct: 149 ARRIGYPVIIKAAAGGGGRGMRVVHAEGHLLSAVNVTRTEAHSSFGDGTVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIG 239
            +    L   +            L+          PA        ++V +    A   IG
Sbjct: 209 HVEVQVLADGQGNAIHLYDRDCSLQRRHQKVLEEAPAPGLDQQAREQVFKACRDACVKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + F++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|300214444|gb|ADJ78860.1| Pyruvate carboxylase [Lactobacillus salivarius CECT 5713]
          Length = 1141

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/235 (14%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +      D      +G   E+       E   I +    +    +  DK+ 
Sbjct: 61  LDID-DIIRIAKMTNADAIHPG-YGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVE 118

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ V +S G+   P         +           P +IK   GG   G+ ++K+ + + 
Sbjct: 119 ARNVANSAGLHTIPGTNDPVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S  +      E YV+ + +    +    L      V         ++  +   
Sbjct: 179 EAYERARSEANQSFGDDELYVEKMIVNPKHIEVQILADKHGNVMHLFERDCSVQRRNQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +  KE+   A    +++        +FL        +++E+N +
Sbjct: 239 IEFAPSITLSQERRKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNPR 291


>gi|213647014|ref|ZP_03377067.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. J185]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|167044402|gb|ABZ09079.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine crenarchaeote HF4000_APKG6D3]
          Length = 496

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 76/278 (27%), Gaps = 34/278 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKP-DLAFN- 56
                   +  G K   +  D                          L   K  D+  + 
Sbjct: 14  ALRVIKTCKALGIKTVAVYSDEDRNSLHVKNATESYHIGEAAPAKSYLNQEKILDVILSS 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     + E  ++ +      +  L  DK + K  +    VP  P 
Sbjct: 74  GADAVHPGYGFLSENSEFAGLCEKNKVTFIGPSAASMDLCGDKQQCKAAMLKAKVPTVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
               +          + I  P ++K + GG   GI ++  DQ +       +  +     
Sbjct: 134 SPDLVKDADEAEKIANEIGYPVMLKSVYGGGGRGIRIVNTDQELQGAYETVTGESIAAVG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYK 225
                V+        +                     ++  +       P   +  +   
Sbjct: 194 KSAILVEKFLAQTRHIEYQLARDKHGNTVHIFERECSIQRRNQKLIEQTPSPIVDQETRD 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            + +L   A +A+    +   +F     + + ++LEIN
Sbjct: 254 RIGKLVVNAAEAVDYTNLGTVEF-LRADNGEFYFLEIN 290


>gi|16762139|ref|NP_457756.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. CT18]
 gi|16766675|ref|NP_462290.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. LT2]
 gi|29143628|ref|NP_806970.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. Ty2]
 gi|56415307|ref|YP_152382.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str. ATCC
           9150]
 gi|161506066|ref|YP_001573178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. arizonae serovar 62:z4,z23:-- str.
           RSK2980]
 gi|161616402|ref|YP_001590367.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi B str. SPB7]
 gi|167552912|ref|ZP_02346663.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|167993967|ref|ZP_02575060.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168233966|ref|ZP_02659024.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|168239408|ref|ZP_02664466.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|168245217|ref|ZP_02670149.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|168262596|ref|ZP_02684569.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168463383|ref|ZP_02697300.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|168822721|ref|ZP_02834721.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|194444408|ref|YP_002042635.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Newport str. SL254]
 gi|194447902|ref|YP_002047408.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Heidelberg str. SL476]
 gi|194471592|ref|ZP_03077576.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194737082|ref|YP_002116328.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Schwarzengrund str.
           CVM19633]
 gi|197249296|ref|YP_002148304.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Agona str. SL483]
 gi|197263196|ref|ZP_03163270.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197364237|ref|YP_002143874.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Paratyphi A str.
           AKU_12601]
 gi|198243570|ref|YP_002217349.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Dublin str.
           CT_02021853]
 gi|200388475|ref|ZP_03215087.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204931207|ref|ZP_03222001.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205354281|ref|YP_002228082.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 287/91]
 gi|207858628|ref|YP_002245279.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Enteritidis str.
           P125109]
 gi|213051967|ref|ZP_03344845.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E00-7866]
 gi|213419161|ref|ZP_03352227.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E01-6750]
 gi|213428303|ref|ZP_03361053.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E02-1180]
 gi|213584323|ref|ZP_03366149.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-0664]
 gi|213618704|ref|ZP_03372530.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-2068]
 gi|213853019|ref|ZP_03382551.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. M223]
 gi|238913540|ref|ZP_04657377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Tennessee str.
           CDC07-0191]
 gi|289829144|ref|ZP_06546799.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. E98-3139]
 gi|25293952|pir||AI0912 biotin carboxylase [imported] - Salmonella enterica subsp. enterica
           serovar Typhi (strain CT18)
 gi|16421941|gb|AAL22249.1| acetyl CoA carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. LT2]
 gi|16504442|emb|CAD07895.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhi]
 gi|29139263|gb|AAO70830.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhi str. Ty2]
 gi|56129564|gb|AAV79070.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. ATCC 9150]
 gi|160867413|gb|ABX24036.1| hypothetical protein SARI_04253 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161365766|gb|ABX69534.1| hypothetical protein SPAB_04211 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194403071|gb|ACF63293.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|194406206|gb|ACF66425.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|194457956|gb|EDX46795.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|194712584|gb|ACF91805.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|195633274|gb|EDX51688.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|197095714|emb|CAR61283.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Paratyphi A str. AKU_12601]
 gi|197212999|gb|ACH50396.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197241451|gb|EDY24071.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|197287884|gb|EDY27272.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|197938086|gb|ACH75419.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199605573|gb|EDZ04118.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|204319974|gb|EDZ05180.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|205274062|emb|CAR39068.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Gallinarum str. 287/91]
 gi|205322505|gb|EDZ10344.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205328113|gb|EDZ14877.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205332015|gb|EDZ18779.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|205336040|gb|EDZ22804.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|205340891|gb|EDZ27655.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205348440|gb|EDZ35071.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|206710431|emb|CAR34789.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Enteritidis str. P125109]
 gi|261248543|emb|CBG26381.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. D23580]
 gi|267995588|gb|ACY90473.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           14028S]
 gi|312914408|dbj|BAJ38382.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str.
           T000240]
 gi|320087828|emb|CBY97592.1| acetyl-CoA carboxylase, biotin carboxylase [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|321225198|gb|EFX50257.1| Biotin carboxylase of acetyl-CoA carboxylase [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|322614521|gb|EFY11451.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315996572]
 gi|322618257|gb|EFY15148.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-1]
 gi|322625970|gb|EFY22784.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-3]
 gi|322626740|gb|EFY23537.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           495297-4]
 gi|322631308|gb|EFY28068.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-1]
 gi|322635425|gb|EFY32139.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           515920-2]
 gi|322643425|gb|EFY39989.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 531954]
 gi|322647271|gb|EFY43769.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649735|gb|EFY46162.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           OH_2009072675]
 gi|322655591|gb|EFY51897.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322658379|gb|EFY54644.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 19N]
 gi|322664397|gb|EFY60593.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           81038-01]
 gi|322667383|gb|EFY63545.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MD_MDA09249507]
 gi|322674631|gb|EFY70723.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 414877]
 gi|322675738|gb|EFY71811.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 366867]
 gi|322682374|gb|EFY78397.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 413180]
 gi|322684761|gb|EFY80762.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 446600]
 gi|323131742|gb|ADX19172.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. 4/74]
 gi|323196161|gb|EFZ81321.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           609458-1]
 gi|323196727|gb|EFZ81872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           556150-1]
 gi|323204364|gb|EFZ89373.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 609460]
 gi|323207712|gb|EFZ92659.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           507440-20]
 gi|323209998|gb|EFZ94903.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str. 556152]
 gi|323214287|gb|EFZ99040.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB101509-0077]
 gi|323219036|gb|EGA03542.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB102109-0047]
 gi|323225042|gb|EGA09295.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB110209-0055]
 gi|323230394|gb|EGA14513.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           MB111609-0052]
 gi|323233370|gb|EGA17464.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009083312]
 gi|323239407|gb|EGA23457.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           2009085258]
 gi|323242342|gb|EGA26368.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           315731156]
 gi|323247304|gb|EGA31269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2009159199]
 gi|323250394|gb|EGA34278.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008282]
 gi|323256842|gb|EGA40557.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008283]
 gi|323263874|gb|EGA47393.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008284]
 gi|323264105|gb|EGA47613.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008285]
 gi|323271636|gb|EGA55055.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Montevideo str.
           IA_2010008287]
 gi|326625128|gb|EGE31473.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Dublin str. 3246]
 gi|326629404|gb|EGE35747.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Gallinarum str. 9]
 gi|332990238|gb|AEF09221.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhimurium str. UK-1]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|126445266|ref|YP_001061370.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
 gi|126224757|gb|ABN88262.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 668]
          Length = 481

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +   L  +             Y++       
Sbjct: 163 AARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIARAR 222

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E  +   +      +             +   +   +   A    + +G 
Sbjct: 223 HIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQVGY 282

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++LFD    + +++E+N +
Sbjct: 283 RGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|331266961|ref|YP_004326591.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           oralis Uo5]
 gi|326683633|emb|CBZ01251.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           oralis Uo5]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S   +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNTR 293


>gi|297581017|ref|ZP_06942942.1| carbamoyl-phosphate synthase [Vibrio cholerae RC385]
 gi|297534843|gb|EFH73679.1| carbamoyl-phosphate synthase [Vibrio cholerae RC385]
          Length = 699

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 210 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 269

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 270 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 329

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 330 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 389

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 390 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 446

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 447 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 489


>gi|261330804|emb|CBH13789.1| acetyl-CoA carboxylase, putative [Trypanosoma brucei gambiense
           DAL972]
          Length = 2181

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V     I       +    +  P +IK  +GG   GI    + + +       +    G 
Sbjct: 192 VYEKAYISTAEECEELCGRLGFPVMIKASEGGGGKGIRRCLRKEDVRDMFFAVAEEVKGC 251

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + + + ++    L   ++ D   D   +            +             +   I
Sbjct: 252 HIFVMRMLENVRHLEVQLLADDYGDCIAVHTRDCSVQ----RRHQKIIEEGPVFGVDASI 307

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +++  A    +A+  RG+   ++++D  ++K F+LE+N +
Sbjct: 308 INDMEAAAVRLAKAVKYRGLGTVEYMYDKSTQKFFFLELNPR 349


>gi|228473350|ref|ZP_04058104.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228275252|gb|EEK14050.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 950

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTILINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ + + ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAIQITEDREKFRVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 76/240 (31%), Gaps = 10/240 (4%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++ H KP+     L G        +     ++I  T    L  A       +    +
Sbjct: 635 IYDIIQHEKPEGVIVQLGGQTALKLAEKLDKYGIKIIGTSFQSLDLAEDRGSFSTLLKEN 694

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +   P           +     +  P +++P       G+ ++   + +   ++      
Sbjct: 695 NIPYPRFGVAETADEALKLADELDFPLLVRPSYVLGGQGMKIVINKEELEAHVVDLLRKI 754

Query: 162 HGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
             ++LL++ Y+DG IE     + D         +   +           ++  + P  + 
Sbjct: 755 PNNKLLLDHYLDGAIEAEADAICDGENVYIIGIMEHIEPCGIHSG---DSNATLPPFNLG 811

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
             + ++++        A+   G+    F        V+ +E N +   T     P ++  
Sbjct: 812 EFVIQQIKDHTHKIALALNTVGLINVQFAV--KDDVVYIIEANPRASRT----VPFISKA 865


>gi|212638782|ref|YP_002315302.1| acetyl-CoA carboxylase biotin carboxylase subunit [Anoxybacillus
           flavithermus WK1]
 gi|212560262|gb|ACJ33317.1| Biotin carboxylase [Anoxybacillus flavithermus WK1]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 89/277 (32%), Gaps = 33/277 (11%)

Query: 22  CASALEDAGFKVSQI--DVDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A ++ G +   +  + DR  + + LA            D   N              
Sbjct: 17  IIRACKELGIETVAVFSEADREALHVQLADEAYCIGPKTSKDSYLNFTNIMSVATLTQCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     + +      A      K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNVTFVGPSPEAITKMGTKDVARETMRQAGVPIVPGSQG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      +   + I  P +IK   GG   GI V + +Q +   +  +            
Sbjct: 137 IIESMDEAIALANEIGYPVIIKATAGGGGKGIRVARNEQELIKGITITQQEAATAFGNPG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            Y++        +    L  +   V         ++          P+ +  +  ++   
Sbjct: 197 VYIEKYIEDFRHVEIQVLADSYGNVIHLGERDCTIQRRLQKLLEETPSPVLDEDMRQKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A QA+   G    +F++D  +R+ +++E+N +
Sbjct: 257 EAAVKAAQAVQYTGAGTVEFIYDYRNRQFYFMEMNTR 293


>gi|153820045|ref|ZP_01972712.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae NCTC
           8457]
 gi|126509415|gb|EAZ72009.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae NCTC
           8457]
          Length = 859

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 370 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 429

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 430 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 489

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 490 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 549

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 550 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 606

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 607 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 649


>gi|109947094|ref|YP_664322.1| biotin carboxylase [Helicobacter acinonychis str. Sheeba]
 gi|109714315|emb|CAJ99323.1| accC [Helicobacter acinonychis str. Sheeba]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKATKHIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM+  A
Sbjct: 313 EMVSGLN---LIEWMIRIA 328


>gi|108563447|ref|YP_627763.1| biotin carboxylase [Helicobacter pylori HPAG1]
 gi|107837220|gb|ABF85089.1| biotin carboxylase [Helicobacter pylori HPAG1]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 316 EMVSGLN---LIEWMIKIA 331


>gi|72393479|ref|XP_847540.1| acetyl-CoA carboxylase [Trypanosoma brucei TREU927]
 gi|62175102|gb|AAX69251.1| acetyl-CoA carboxylase, putative [Trypanosoma brucei]
 gi|70803570|gb|AAZ13474.1| acetyl-CoA carboxylase, putative [Trypanosoma brucei brucei strain
           927/4 GUTat10.1]
          Length = 2181

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 24/162 (14%), Positives = 57/162 (35%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V     I       +    +  P +IK  +GG   GI    + + +       +    G 
Sbjct: 192 VYEKAYISTAEECEELCGRLGFPVMIKASEGGGGKGIRRCLRKEDVRDMFFAVAEEVKGC 251

Query: 165 QLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + + + ++    L   ++ D   D   +            +             +   I
Sbjct: 252 HIFVMRMLENVRHLEVQLLADDYGDCIAVHTRDCSVQ----RRHQKIIEEGPVFGVDASI 307

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +++  A    +A+  RG+   ++++D  ++K F+LE+N +
Sbjct: 308 INDMEAAAVRLAKAVKYRGLGTVEYMYDKSTQKFFFLELNPR 349


>gi|91786998|ref|YP_547950.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas sp. JS666]
 gi|91696223|gb|ABE43052.1| acetyl-CoA carboxylase, biotin carboxylase [Polaromonas sp. JS666]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/217 (13%), Positives = 74/217 (34%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFKFIGPTPESIRIMGDKVSAKQTMIKAGVPCVPGSEGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                     +  P +IK   GG   G+ V+  + ++   +  + +     + + +  + 
Sbjct: 142 PVVIKRIAKQVGYPVIIKAAGGGGGRGMRVVHTEAALLHAVQTTKAEAGAAFGNPEVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++ D   +   +            K         +P      + +++ 
Sbjct: 202 KFLQNPRHVEIQILADQHRNAVWLGERDCSMQRRHQKVIEEAPAPGIPR----KLIEKIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + I  RG    +FL+   + + +++E+N +
Sbjct: 258 ERCVAAVKKINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|38233253|ref|NP_939020.1| pyruvate carboxylase [Corynebacterium diphtheriae NCTC 13129]
 gi|38199512|emb|CAE49163.1| pyruvate carboxylase [Corynebacterium diphtheriae]
          Length = 1141

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 73/234 (31%), Gaps = 7/234 (2%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +         D  +   +G   E+  +        I +         L+ DK  
Sbjct: 76  LDIDE-IIRAAKQTGADAIYPG-YGFLSENAQLARECAENGITFIGPPPSVLELTGDKAA 133

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHL---ISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +       G+P                L    + P  +K + GG   G+  +   +++  
Sbjct: 134 AVTAAREAGLPTLTETEATDDPKKLAELTKGQTYPLFVKAVAGGGGRGMRFVDAPENLEK 193

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++S            Y +   +    +    L  +   +         L+       
Sbjct: 194 LAAEASREAAAAFGDGRVYAERAVINPQHIEVQILGDSAGNIIHLYERDCSLQRRHQKVV 253

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + PA+     + +++   A    + IG +G    +FL D     V ++E+N +
Sbjct: 254 EIAPAQHLAPGLREKICADAVAFARHIGYQGAGTVEFLVDEEGNHV-FIEMNPR 306


>gi|121999113|ref|YP_001003900.1| acetyl-CoA carboxylase, biotin carboxylase [Halorhodospira
           halophila SL1]
 gi|121590518|gb|ABM63098.1| acetyl-CoA carboxylase, biotin carboxylase [Halorhodospira
           halophila SL1]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V++ + ++   +  +             Y++       
Sbjct: 149 ASEIGYPIMIKAASGGGGRGMRVVRSEAALLNAVSLTRGEAENAFGDGTVYMEKYLEKPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                ++          PA    +  +         A + +G
Sbjct: 209 HIEVQVLADHHGNAIHLGERDCSMQRRHQKVVEEAPAPGITEAQRRDIGERCAEACRQMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|254226144|ref|ZP_04919740.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V51]
 gi|125621312|gb|EAZ49650.1| carbamoyl-phosphate synthase, large subunit [Vibrio cholerae V51]
          Length = 978

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/289 (12%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 489 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLAIVRVEKPKGVIVQYGGQTP 548

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P   ++      ++    
Sbjct: 549 LKLARALEAAGVPVIGTSPDAIDRAEDRERFQQAVQRLGLKQPDNATVTAIEQAIEKSRE 608

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +Q +     ++ S ++   +L+++++D   E+    +
Sbjct: 609 IGFPLVVRPSYVLGGRAMEIVYDEQDLRRYFNEAVSVSNESPVLLDRFLDDATEVDVDAI 668

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    V    +   +       +S  ++  +    +  +I  +++         +G RG
Sbjct: 669 CDGERVVIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDKMREQVEKLAFELGVRG 725

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F       +V+ +E+N +   T     P ++   G    ++   
Sbjct: 726 LMNIQFAV--KDNEVYLIEVNPRAART----VPFVSKATGAPLAKIAAR 768



 Score = 39.9 bits (91), Expect = 0.42,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 51/167 (30%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +    +       +    +  ++LLI++ + G +     +   
Sbjct: 66  FPCIIRPSFTMGGSGGGIAYNREEFEEICTRGLDLSPTNELLIDESLIGWKEYEMEVVRD 125

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +F    +      +          +          +  +     G S 
Sbjct: 126 KNDNCIIVCAIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNASLAVLREIGVETGGSN 185

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 186 VQFGINPKDGRMVIIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 228


>gi|325291118|ref|YP_004267299.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophobotulus
           glycolicus DSM 8271]
 gi|324966519|gb|ADY57298.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophobotulus
           glycolicus DSM 8271]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     + +   I +    +    +  +K R++Q +   GVPV P     +  +
Sbjct: 82  YGFLAENSKFAGMCKECRITFIGPDLETIEMMGNKSRARQTMMKAGVPVVPGSEGLVHDD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
                    I  P ++K   GG   GI ++ +   +             ++      L +
Sbjct: 142 EHAEAEADRIGYPVMLKASAGGGGKGIRIVWEKGDLQKAFATAKTEAMVNFGDDSMYLEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   ++ D   +V  +            + +         A +  D+ K +  
Sbjct: 202 FIEKPRHIEFQILADHHGNVIHLGERDCSIQ----RRNQKVIEEAPSAALTADLRKRMGD 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A +A+G +     +FL D    + +++E+N +
Sbjct: 258 AAVNAAKAVGYKNAGTIEFLLDVH-GQFYFMEMNTR 292


>gi|323488923|ref|ZP_08094160.1| acetyl-CoA carboxylase biotin carboxylase subunit [Planococcus
           donghaensis MPA1U2]
 gi|323397315|gb|EGA90124.1| acetyl-CoA carboxylase biotin carboxylase subunit [Planococcus
           donghaensis MPA1U2]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V +  +     L  +             Y++       
Sbjct: 147 ADEIGFPVIIKATAGGGGKGIRVARTREDFVTGLKMTQKEAAAAFGNPGVYIEKFIEDFR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P+     ++  E+   A  A  A+ 
Sbjct: 207 HIEIQVLADSHGNAIHLGERDCSIQRRMQKLVEEAPSPALSPELRSEMGEAAVKAALAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +F+FD +++K +++E+N +
Sbjct: 267 YRGAGTVEFIFDAVNQKFYFMEMNTR 292


>gi|319427589|gb|ADV55663.1| acetyl-CoA carboxylase multifunctional enzyme, AccADCB [Shewanella
            putrefaciens 200]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|290794219|gb|ADD64431.1| D-alanine:D-alanine ligase [Streptococcus salivarius]
          Length = 160

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/129 (21%), Positives = 54/129 (41%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            ++ P  +KP   GSS+GI   + +  +   +  +  ++    +        IE+     
Sbjct: 32  KLTFPVFVKPANMGSSVGISKAENEAELRAAIDLALKYDSRILIEQGVAAREIEVGILGN 91

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            +         V    FY Y+ KY     T  +PA +P ++  +++  A  A +A+G  G
Sbjct: 92  TNVKTTDPGEVVKDVAFYDYQAKYIDNKITMDIPAHVPAEVMTQMRAYAAKAFRALGGCG 151

Query: 243 ISRSDFLFD 251
           ++R DF   
Sbjct: 152 LARCDFFLT 160


>gi|261344934|ref|ZP_05972578.1| ATP-grasp domain protein [Providencia rustigianii DSM 4541]
 gi|282567075|gb|EFB72610.1| ATP-grasp domain protein [Providencia rustigianii DSM 4541]
          Length = 406

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 71/275 (25%), Gaps = 28/275 (10%)

Query: 17  SSGKAC--ASALEDAGFKVSQIDVDRSVGLVLA-----------HLKPDLAFNVL----- 58
            SG         ++ G+       +     +LA            L  D   ++L     
Sbjct: 11  ISGTGVRAIKIAKERGYHTVLFTKENDFYNLLADNPTLYVDTLVELNTDCIASILSHAME 70

Query: 59  ---HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKM-RSKQVVSSCGVPVCPSILVN 114
              HG    D         +           ++L+  +     +         C   + N
Sbjct: 71  LDTHGIVAFDDYRLINAAAVSHALGLPAPNLTSLATCRYKHQTRQQLHHLDANCRYKVCN 130

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL---QSSSWNHGDQLLIEQY 171
                    +  P V+KP     S  + V    + + L +    +  + + G +L     
Sbjct: 131 INNTLDISKMCFPLVVKPCDDSGSSKVTVCHSMEDLDLAIKELTEFRTNHRGYKLSSTYL 190

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           V+          +A  D T                   +            +  ++ +  
Sbjct: 191 VEEFIEGDEYSAEAYWDTTLACWQILGITKKYTTSGKYSVEIGHDFPYESPLSAKIIQTV 250

Query: 232 FLAHQAIGCRG-ISRSDFLFDPLSRKVFWLEINVQ 265
            L    +     ++  +F     +  +  +EIN +
Sbjct: 251 ILWLTHVNLSHTVAHVEFKL--HNNDIKLIEINPR 283


>gi|148926055|ref|ZP_01809741.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8486]
 gi|145845534|gb|EDK22626.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8486]
          Length = 481

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVAR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDTGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|120597619|ref|YP_962193.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            W3-18-1]
 gi|146294242|ref|YP_001184666.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            putrefaciens CN-32]
 gi|120557712|gb|ABM23639.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            W3-18-1]
 gi|145565932|gb|ABP76867.1| biotin carboxyl carrier protein [Shewanella putrefaciens CN-32]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKKQVLDYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|17228434|ref|NP_484982.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nostoc sp. PCC
           7120]
 gi|728782|sp|Q06862|ACCC_ANASP RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|289133|gb|AAB51770.1| biotin carboxylase [Anabaena sp.]
 gi|17130285|dbj|BAB72896.1| biotin carboxylase [Nostoc sp. PCC 7120]
          Length = 447

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/219 (16%), Positives = 73/219 (33%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I     I +      A  L  DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLSENAKFAEICADHHIAFIGPTPEAIRLMGDKSTAKETMQKAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS---IPLDLLQSSSWNHGDQL 166
            +   +  ++    I  P +IK   GG   G+ +++       + L     +    G+  
Sbjct: 138 LVETEQEGLELAKDIGYPVMIKATAGGGGRGMRLVRSPDEFVKLFLAAQGEAGAAFGNAG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +              A        +   +      + +           +  D+ ++
Sbjct: 198 VYIEKFIERPRHIEFQILADNYG--NVIHLGERDCSIQRRNQKLLEEAPSPALDSDLREK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + + A  A Q I   G    +FL D  S + +++E+N +
Sbjct: 256 MGQAAVKAAQFINYTGAGTIEFLLD-RSGQFYFMEMNTR 293


>gi|223933982|ref|ZP_03625939.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis
           89/1591]
 gi|302024409|ref|ZP_07249620.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 05HAS68]
 gi|330833410|ref|YP_004402235.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis ST3]
 gi|223897344|gb|EEF63748.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis
           89/1591]
 gi|329307633|gb|AEB82049.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis ST3]
          Length = 457

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 50/150 (33%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG   GI  ++K + +            +++ +G   +        
Sbjct: 148 AEKIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASSEAKAAFGNGAMYMERVVYPAR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D    V  +            K      +  +   +   I +     A  A 
Sbjct: 208 HIEVQILADQHGHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRERIGQ----AAVRAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Q++G       +FL D    + +++E+N +
Sbjct: 264 QSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|209550292|ref|YP_002282209.1| carbamoyl phosphate synthase large subunit [Rhizobium leguminosarum
           bv. trifolii WSM2304]
 gi|209536048|gb|ACI55983.1| carbamoyl-phosphate synthase, large subunit [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 1162

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 88/335 (26%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T   ++ 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARLVAAEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G          +     ++     
Sbjct: 795 EGQLQTYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLSHAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +P+++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRSLPVELLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.5 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++L+E+ V G +     +   
Sbjct: 217 LPAIIRPSFTMGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLVEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|167516950|ref|XP_001742816.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163779440|gb|EDQ93054.1| predicted protein [Monosiga brevicollis MX1]
          Length = 1485

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/297 (13%), Positives = 80/297 (26%), Gaps = 36/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD  F 
Sbjct: 425 SGSQAIKALKERNVQSILINPNIATVQTAEGLADQVYLLPVIPEFVQSVIEKERPDGIFL 484

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     IL    +    + + +   + D+      ++     +    +
Sbjct: 485 QFGGQTALNCGIELDKLGILSHYGVRVLGTSVSSIIATEDRDIFAAKLTEIGERIAPSIA 544

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + H I  P +++       LG      D  +        S        +  
Sbjct: 545 ATSTEAAIQAAHEIGYPVIVRAAFSLGGLGSGFAHDDAQLR----TLCSRAFSSCPQVLV 600

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-QR 229
                                     +      L   + +S  V P++   D    + + 
Sbjct: 601 EKSLKGWKEIEYEVVRDQYDNCVTVCNMENFDPLGIHTGDSIVVAPSQTLSDKDYHLLRS 660

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            +    + +G  G     F  DPLSR    +E N  P ++  S     +   GY   
Sbjct: 661 ASIRVARQLGIVGECNVQFALDPLSRDYCIIEAN--PRLSRSS--ALASKATGYPLA 713


>gi|33600557|ref|NP_888117.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|33568156|emb|CAE32069.1| biotin carboxylase [Bordetella bronchiseptica RB50]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ VI+ +  +   L ++S            Y++       
Sbjct: 149 AREVGYPLLVKAAAGGGGRGMRVIQGEAQLREGLERASMEAKSAFGDGSVYIERYISPVR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +        E  +   +      +             +  +  + +   A    +A+  
Sbjct: 209 HVEIQVFGDGEDVIHLGERECSIQRRHQKLLEESPSPVLSEETRQRMGEAACALARAVKY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    +F+ D  S + F++E+N +
Sbjct: 269 RGAGTLEFVMDGKSGEFFFIEMNTR 293


>gi|89068690|ref|ZP_01156076.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
 gi|89045653|gb|EAR51715.1| acetyl-CoA carboxylase [Oceanicola granulosus HTCC2516]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 26/148 (17%), Positives = 50/148 (33%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              +  P +IK   GG   GI VI+ +  +          +    GD  L  +       
Sbjct: 151 AGELGYPVMIKAAAGGGGRGIRVIESEADLAKQMPAAQSEAEAAFGDGGLYMERFVDKAR 210

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V      D    A  +        +           A +  +  + +   A    ++
Sbjct: 211 HVEVQILGDGDRAVHAWERECSLQ---RRRQKVWEEAPAACLSQEEREALCASAVRLAES 267

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD   R+ +++E+N +
Sbjct: 268 VGYRGAGTLEYLFDEARREFYFIEMNTR 295


>gi|328957250|ref|YP_004374636.1| pyruvate carboxylase [Carnobacterium sp. 17-4]
 gi|328673574|gb|AEB29620.1| pyruvate carboxylase [Carnobacterium sp. 17-4]
          Length = 1144

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    + D      +G   E+       E   I +    +    +  DK++
Sbjct: 62  LDI-EDLIRIAKDSEADAIHPG-YGFLSENIDFARRCEEEGIIFIGPKLHHLDIFGDKIK 119

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+   + G+   P     +       +  +L   P +IK   GG   G+ V   +  + 
Sbjct: 120 AKEAAIAAGIQSIPGSDGPVADLEGVKEFGNLYGYPIIIKAALGGGGRGMRVANSEADVK 179

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    L  T   +         ++      
Sbjct: 180 DSFERAQSEARAAFGSDEIYVERYIQDPKHIEVQILGDTHGNIVHLYERDCSVQRRHQKV 239

Query: 212 THVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P   I  ++  E+   A    + +G       +FL        +++E+N +
Sbjct: 240 VEVAPCVSISEELRAEMCLSAVQLMEHVGYVNAGTVEFLL--EGENFYFIEVNPR 292


>gi|312213919|emb|CBX93921.1| hypothetical protein [Leptosphaeria maculans]
          Length = 1396

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/294 (14%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G     I+ +                       V  V+   +PD  + 
Sbjct: 470 SGSQAIKALREEGIYTILINPNIATIQTSKGLADKVYFLPVNADFVRKVIQKERPDGIYV 529

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     S   +        S  
Sbjct: 530 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 589

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M +   I  P +++       LG    + +  +    L + ++    Q+LIE+ +
Sbjct: 590 NVEEAMRAVKDIGFPVIVRAAYALGGLGSGFAEDEAQLLD--LCNKAFAASPQVLIERSM 647

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 648 KGW-KEIEYEVVRDARDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 706

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 707 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 756


>gi|294624097|ref|ZP_06702843.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|294666072|ref|ZP_06731332.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
 gi|292601608|gb|EFF45599.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 11122]
 gi|292604173|gb|EFF47564.1| acetyl-CoA carboxylase [Xanthomonas fuscans subsp. aurantifolii
           str. ICPB 10535]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   + + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|218526198|gb|ACK86506.1| carbamoyl-phosphate synthase [Libelloides rhomboideus rhomboideus]
          Length = 686

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 91  SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 150

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + ++     V    +
Sbjct: 151 TFGGQTALNCGVELEKANVFAKYGWKILGTPIQSIIETEDRKMFAEKINEIGEKVAPSAA 210

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 211 VYSIDEALEAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLRT--LATQALAHSNQLIIDK 268

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            +    I V   +       ++  +        +    Y  ++  
Sbjct: 269 SLKGW-KEVEYEVVRDVFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTT 327

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 328 AIKVIRHFKVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 383

Query: 291 WM 292
            +
Sbjct: 384 KL 385


>gi|213964309|ref|ZP_03392535.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           sputigena Capno]
 gi|213953051|gb|EEB64407.1| carbamoyl-phosphate synthase, large subunit [Capnocytophaga
           sputigena Capno]
          Length = 950

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 94/304 (30%), Gaps = 33/304 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLA-HLKPDLAF 55
           SG     +L + G K   I         D              +S+  +L  H + D   
Sbjct: 29  SGSQSLRSLREDGIKTILINSNPATIMTDPSMADVVYLKPLTTKSLVEILKAHPEIDAVL 88

Query: 56  NVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
             + G    +  ++A      +   +      I A  ++ D+ + + ++   G+P+ PS 
Sbjct: 89  PTMGGQTALNLCIEADEKGIWKDFGVEIIGVDIDAIQITEDREKFRVLLDEIGIPMAPSE 148

Query: 112 LVNRF--TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               F    +       P VI+P       G  ++ K +   + L +    +   ++LI+
Sbjct: 149 TATSFLKGKEIAQRFGFPLVIRPSFTLGGTGASIVYKKEDFDMLLNRGLEASPIHEVLID 208

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +     D   I     +     +      +             +    
Sbjct: 209 KALLGWKEYELELLRDKNDNVAIICTIENMDPMGIHTGDSITVAPAMTLSDRTFQRMRDM 268

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRK-VFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
              +        G     F   P  ++ +  +EIN  P ++  S     +   GY   ++
Sbjct: 269 AIKMMRSIGDFAGGCNVQFAVSPDEKEDIIAIEIN--PRVSRSS--ALASKATGYPIAKI 324

Query: 289 LLWM 292
              +
Sbjct: 325 ATKL 328



 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 86/283 (30%), Gaps = 32/283 (11%)

Query: 20  KACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
               +A ++ G++   I         D D              +  ++ H KP+     L
Sbjct: 593 HGVLAA-KECGYETIMINCNPETVSTDFDTADKLYFEPVFWEYIYDIIQHEKPEGVIVQL 651

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     ++I  T    L  A       +    ++   P           +
Sbjct: 652 GGQTALKLAEKLDKYGIKIIGTSFQSLDLAEDRGSFSTLLKENNIPYPRFGVAETADEAL 711

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IEL 177
                +  P +++P       G+ ++   + +   ++        ++LL++ Y+DG IE 
Sbjct: 712 KLSDELDFPLLVRPSYVLGGQGMKIVINKEELEAHVVDLLRKIPNNKLLLDHYLDGAIEA 771

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +           ++  + P  +   + ++++        A
Sbjct: 772 EADAICDGENVYIIGIMEHIEPCGIHSG---DSNATLPPFNLGEFVLQQIKDHTHKIALA 828

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +   G+    F        V+ +E N +   T     P ++  
Sbjct: 829 LNTVGLINVQFAV--KDDVVYIIEANPRASRT----VPFISKA 865


>gi|212539778|ref|XP_002150044.1| urea amidolyase, putative [Penicillium marneffei ATCC 18224]
 gi|210067343|gb|EEA21435.1| urea amidolyase, putative [Penicillium marneffei ATCC 18224]
          Length = 1243

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/185 (11%), Positives = 56/185 (30%), Gaps = 19/185 (10%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW----NHGDQLLIEQYVDGIELT 178
            +  P ++K   GG  +G++    +  +  +     S          + +E+Y       
Sbjct: 151 RLGYPVMLKATAGGGGMGLLACANEAEVRENFNTVISRASSLFKNAGVFLERYYPDSHHI 210

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +             +        +           ++   D+ +++ + A    + I
Sbjct: 211 EVQVFGNGQGKAISVGERECSIQRRHQKVIEECPSPFVSQRYPDLRQKLTQCAVRLAEDI 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVE 294
                   ++L D  +   F+LE+N             +    G +   +  +L+  M+ 
Sbjct: 271 KYGSAGTVEYLVDDHTGDFFFLEMNT-----------RLQVEHGITEMCYNVDLVELMLR 319

Query: 295 DASCL 299
            A C 
Sbjct: 320 QADCE 324


>gi|150376380|ref|YP_001312976.1| carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           medicae WSM419]
 gi|150030927|gb|ABR63043.1| Carbamoyl-phosphate synthase L chain ATP-binding [Sinorhizobium
           medicae WSM419]
          Length = 670

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 80/276 (28%), Gaps = 27/276 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +DR +   +     D      +G   E+      LE   + +    + A     DK+ 
Sbjct: 64  IVIDR-ILEAIRKTGADAVHPG-YGFLSENSAFAEALEKEGVTFIGPPVRAIEAMGDKIT 121

Query: 96  SKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +               I  P +IK   GG   G+ +   +    
Sbjct: 122 SKKLAAEAGVSTVPGHMGLIGDADEAARIAASIGFPVMIKASAGGGGKGMRIAWTEDEAR 181

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      +         ++  +   
Sbjct: 182 EGFQSSKNEAKSSFGDDRIFIEKFVTEPRHIEIQVLGDKHGNIVYLGERECSIQRRNQKV 241

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  +      A    +A+        +F+ D      ++LE+N +     
Sbjct: 242 IEEAPSPFLDEKTRRAMGEQAVALAKAVAYFSAGTVEFIVDARGN-FYFLEMNTR----- 295

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
                    +       G    +L+  M+  A+  +
Sbjct: 296 -----LQVEHPVTELVTGL---DLVEQMIRVAAGEK 323


>gi|9104817|gb|AAF82862.1|AE003859_3 biotin carboxylase subunit of acetyl CoA carboxylase [Xylella
           fastidiosa 9a5c]
          Length = 469

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 91  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 150

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V+  +  +   +  + S         
Sbjct: 151 PLGDDIVANVKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQSEAKAAFGNG 210

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y++        +    L   +            ++          PA    + +  E+
Sbjct: 211 QVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEALRNEI 270

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A   IG RG    +FLF   + + +++E+N +
Sbjct: 271 GQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNTR 306


>gi|294787841|ref|ZP_06753085.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Simonsiella
           muelleri ATCC 29453]
 gi|294484134|gb|EFG31817.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Simonsiella
           muelleri ATCC 29453]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 AEKVGFPVIVKASGGGGGRGMRVVEKKEDLIQSVEMTKAEAQAAFGNPMVYMERFLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I  +   ++      A + IG
Sbjct: 209 HIEIQILADEHGNAIYLGERDCSMQRRHQKIIEEAPAPFITPEERAKIGMACAEACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|226329195|ref|ZP_03804713.1| hypothetical protein PROPEN_03098 [Proteus penneri ATCC 35198]
 gi|225202381|gb|EEG84735.1| hypothetical protein PROPEN_03098 [Proteus penneri ATCC 35198]
          Length = 333

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/289 (13%), Positives = 94/289 (32%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 23  ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTP 82

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                    E + +  T    +  A   ++ +          P   ++      ++   L
Sbjct: 83  LKLARALEAEGVPVIGTTPDAIDKAEDRERFQKAVDKLGLKQPENATVTALEEAVEKAQL 142

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +      + S ++   +L+++++D       V  
Sbjct: 143 IGYPLVVRPSYVLGGRAMEIVYDEVDLRRYFQTAVSVSNDAPVLLDRFLDD---AIEVDI 199

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
           DA  D  ++ +     +  +    S +S   LPA     +I   +++        +G +G
Sbjct: 200 DAICDGKQVVIGGIMEHIEQAGVHSGDSACSLPAYTLSKEIQDVMRKQVRELAFELGVKG 259

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +  + F        V+ +E+N +   T     P ++   G    ++   
Sbjct: 260 LMNAQFAV--KGDDVYLIEVNPRAART----VPFVSKATGVPLAKVAAR 302


>gi|241205675|ref|YP_002976771.1| carbamoyl phosphate synthase large subunit [Rhizobium leguminosarum
           bv. trifolii WSM1325]
 gi|240859565|gb|ACS57232.1| carbamoyl-phosphate synthase, large subunit [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 1162

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/335 (13%), Positives = 86/335 (25%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T   ++ 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARMVATEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G          +     ++     
Sbjct: 795 EGQLQSYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLSHAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +  ++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRTLSNEMLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDDVVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.9 bits (86), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++L+E+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLVEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKIAAKL 379


>gi|161378180|ref|NP_297342.2| acetyl-CoA carboxylase biotin carboxylase subunit [Xylella
           fastidiosa 9a5c]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/218 (16%), Positives = 72/218 (33%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         L  DK+++   + + GVP  P    
Sbjct: 77  AIHPGYGFLSENASFAERVEQSGFIFIGPRAETIRLMGDKVQAIHAMKAAGVPCVPGSDG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V+  +  +   +  + S         
Sbjct: 137 PLGDDIVANVKIAREIGYPVIIKAAGGGGGRGMRVVHTEVGLKAAIETTQSEAKAAFGNG 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y++        +    L   +            ++          PA    + +  E+
Sbjct: 197 QVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEALRNEI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A   IG RG    +FLF   + + +++E+N +
Sbjct: 257 GQVCVDACIRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|78046119|ref|YP_362294.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. vesicatoria str. 85-10]
 gi|325925569|ref|ZP_08186956.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas perforans 91-118]
 gi|78034549|emb|CAJ22194.1| biotin carboxylase [Xanthomonas campestris pv. vesicatoria str.
           85-10]
 gi|325544021|gb|EGD15417.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas perforans 91-118]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   + + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|152978322|ref|YP_001343951.1| acetyl-CoA carboxylase biotin carboxylase subunit [Actinobacillus
           succinogenes 130Z]
 gi|150840045|gb|ABR74016.1| acetyl-CoA carboxylase, biotin carboxylase [Actinobacillus
           succinogenes 130Z]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSVKSYLNVPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAINAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +  + I  P +IK   GG   G+ V++ + S+   +  + +     
Sbjct: 133 GSDGPLGTDMAKNKEIANRIGFPVIIKASGGGGGRGMRVVRDENSLEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    +  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVIADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|296415638|ref|XP_002837493.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295633365|emb|CAZ81684.1| unnamed protein product [Tuber melanosporum]
          Length = 2194

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 40/294 (13%), Positives = 86/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 430 SGSQAIKALKEEGIYTILINPNIATIQTSKGLADKVYFLPVTAEFVRKVIQYERPDSIYV 489

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP----SIL 112
              G       +Q   E   +     G     +   + R     +   +        S  
Sbjct: 490 TFGGQTALQVGIQLKDEFEGLGVKVLGTPIETIITTEDRELFARAMEEIGEKCAKSASAS 549

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
                M     I  P +++       LG      +  +    L + ++    Q+LIE+ +
Sbjct: 550 SVEEAMTVVKDIGFPVIVRAAYALGGLGSGFAYDEDQLRD--LCNKAFAASPQVLIEKSM 607

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 608 KGW-KEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 666

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 667 NVIRHLGVVGECNIQYALNPFSKEYCIIEVNAR--LSRSS--ALASKATGYPLA 716


>gi|163786846|ref|ZP_02181294.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteriales bacterium ALC-1]
 gi|159878706|gb|EDP72762.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteriales bacterium ALC-1]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 77/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHL---------KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I E   I +  +
Sbjct: 47  EAVCIGPAPSSESYLKIANIIAAAEITNADAIHPG-YGFLSENAKFSKICEEHGIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  +K  + + GVP  P     I               P ++K   GG  
Sbjct: 106 SEEMIDRMGDKANAKSTMIAAGVPCVPGSEGVIETFEDCKKIAKETGYPVMLKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K   +      + +     + + D  + +   +   +   ++GD+S     ++
Sbjct: 166 KGMRAVWKAADLQDAWESARTESKAAFGNDDMYMEKLIEEPRHIEIQIVGDSSGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +  V    +   +  ++ + A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEEVPSPFMTDKLRDKMGKAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|126175717|ref|YP_001051866.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS155]
 gi|304411135|ref|ZP_07392750.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS183]
 gi|307306430|ref|ZP_07586173.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            BA175]
 gi|125998922|gb|ABN62997.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella baltica
            OS155]
 gi|304350328|gb|EFM14731.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS183]
 gi|306910721|gb|EFN41149.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            BA175]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAINVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|332519396|ref|ZP_08395863.1| acetyl-CoA carboxylase, biotin carboxylase [Lacinutrix algicola
           5H-3-7-4]
 gi|332045244|gb|EGI81437.1| acetyl-CoA carboxylase, biotin carboxylase [Lacinutrix algicola
           5H-3-7-4]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 77/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I    +I +  +
Sbjct: 47  EAVCIGPAPSSESYLKMSNIIAAAEITNADAIHPG-YGFLSENAKFSKICAEHDIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  +K  + + GVP  P     I               P ++K   GG  
Sbjct: 106 SPDMIDKMGDKANAKSTMIAAGVPCVPGSEGVIETFEDCKKIAKETGYPVMLKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + + D  + +   +   +   ++GD++     ++
Sbjct: 166 KGMRAVWKPEDLQEAWESARQESKAAFGNDDMYMEKLIEEPRHIEIQIVGDSNGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +  V    +   + K++   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEEVPSPFMTPALRKKMGEAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|325273820|ref|ZP_08140006.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas sp.
           TJI-51]
 gi|324101044|gb|EGB98704.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas sp.
           TJI-51]
          Length = 393

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 72/268 (26%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVNMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFNVVPTARATQLTMNREGIRRLAAEELELPT-SPYHFADTYEDFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P V+KP+   S  G  +++ D  +        +   G        V+G    
Sbjct: 143 KGVADVGYPCVVKPVMSSSGKGQSLLRSDADLQKA--WDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFDYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMSEKALAESQRVAKAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|256070870|ref|XP_002571765.1| acetyl-CoA carboxylase [Schistosoma mansoni]
 gi|238656912|emb|CAZ27995.1| acetyl-CoA carboxylase [Schistosoma mansoni]
          Length = 2576

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 55/178 (30%), Gaps = 5/178 (2%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           L          + S  +     +      +     I  P +IK   GG   GI       
Sbjct: 207 LPQRSSSVYSRLISEDLYRSGCVTDVSSCLKCAEKIGYPVMIKASAGGGGKGIRKALTSA 266

Query: 149 SIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
            I     Q  +   G  + + +       L   ++ D       +            K  
Sbjct: 267 DIERFFPQVQAEVPGSPIFVMKCATSVRHLEVQILCDIYGQAISMFGRDCSVQRRHQKII 326

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 V P     +I +++++ A    + +        ++L+DP S + ++LE+N +
Sbjct: 327 EEAPIIVAPK----EIIEQMEQAAVRLSKLVSYVSAGTVEYLYDPDSNQFYFLELNPR 380


>gi|308063868|gb|ADO05755.1| biotin carboxylase [Helicobacter pylori Sat464]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|288941395|ref|YP_003443635.1| phosphoribosylglycinamide formyltransferase 2 [Allochromatium
           vinosum DSM 180]
 gi|288896767|gb|ADC62603.1| phosphoribosylglycinamide formyltransferase 2 [Allochromatium
           vinosum DSM 180]
          Length = 394

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/268 (14%), Positives = 71/268 (26%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDR----------SVGLVLAHLKPDLAFNVL 58
           GK     L+  G +V   D           DR           +  V+   +PDL    +
Sbjct: 24  GKEVVIELKRLGVEVIACDRYANAPAMQVADRAHCFSMLDGAELRRVIEQERPDLIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         +P   +  L       +    + +             +    
Sbjct: 84  EAIATETLLELEAEGFRVVPTARAVQLTMNREGIRRLVAEELGLPT-SNYRFADTHAEFE 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G  +++    +        +   G        V+G    
Sbjct: 143 QAVAEIGLPCVVKPIMSSSGKGQSLVRHADDLQAA--WDYAQVGGRAGGGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  +     +  Q +A    +A+
Sbjct: 199 DFDYEITLLTVRHRDGTAFCEPIGHRQEEGDYRESWQPQPMTPRALERAQAIAAQVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  GI   +        +V + E++ +P
Sbjct: 259 GGPGIFGVELFV--RGDEVIFSEVSPRP 284


>gi|533707|gb|AAA67356.1| 3-methylcrotonyl-CoA carboxylase precursor [Arabidopsis thaliana]
          Length = 715

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 19/159 (11%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ +++  +      L +         
Sbjct: 171 YHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFG 230

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +    ++        +           V         ++          PA         
Sbjct: 231 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAA-------- 282

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                      +G       +F+ D  S + +++E+N +
Sbjct: 283 -----------VGYYNAGTVEFIVDTESDQFYFMEMNTR 310


>gi|56461386|ref|YP_156667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Idiomarina
           loihiensis L2TR]
 gi|56180396|gb|AAV83118.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Idiomarina
           loihiensis L2TR]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/283 (15%), Positives = 86/283 (30%), Gaps = 40/283 (14%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKP------------------------- 51
                 A ++ G K   +   VDR++  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTVDRNLKHVLLADEAICIGKAPANESYLNIPRIISAAEIT 73

Query: 52  DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
           D A   +H   G   E+      +E     +         L  DK+ + + +   GVP  
Sbjct: 74  DAA--AIHPGYGFLAENADFAEQVEQSGFIFVGPTPDLIRLMGDKVSAIKAMKKTGVPCV 131

Query: 109 PSILVNRFTMDS-----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
           P         D         I  P +IK   GG   G+ V++++  +   +  + +    
Sbjct: 132 PGSDGPLDDDDERNKKLAKRIGYPIIIKAAGGGGGRGMRVVREESELLSSITMTQNEARA 191

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLD 222
                  Y++        +    L   +            ++          P   I  +
Sbjct: 192 AFGNPVVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITPE 251

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + K +      A   +G RG    +FL+   + + +++E+N +
Sbjct: 252 MRKFIGERCAKACVELGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|21241301|ref|NP_640883.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           axonopodis pv. citri str. 306]
 gi|21106623|gb|AAM35419.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   + + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--ENGRFYFIEMNTR 292


>gi|322372313|ref|ZP_08046849.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C150]
 gi|321277355|gb|EFX54424.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C150]
          Length = 461

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 30/221 (13%), Positives = 76/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +    VPV P    
Sbjct: 82  AIHPGFGFLSENSKFSTLCEEMNIKFIGPSGEVMDKMGDKINARAEMIKANVPVIPGSDG 141

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++  + +  P ++K   GG   GI  +  ++ +      +S      + +G 
Sbjct: 142 EVFTAEEALEVANRLGYPVMLKASAGGGGKGIRKVSTEEELAPAFESASQEAKAAFGNGA 201

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  ++  +            K    + +  +   +  +I 
Sbjct: 202 MYIEKVIYPARHIEVQILGDSYGNIVHLGERDCSLQRNNQKVLEESPSVAIGKTLRHEIG 261

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               R A      +        +FL D  + + +++E+N +
Sbjct: 262 SAAARAAKA----VNYENAGTIEFLLDEKTGQFYFMEMNTR 298


>gi|237753279|ref|ZP_04583759.1| biotin carboxylase [Helicobacter winghamensis ATCC BAA-430]
 gi|229375546|gb|EEO25637.1| biotin carboxylase [Helicobacter winghamensis ATCC BAA-430]
          Length = 456

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/269 (16%), Positives = 82/269 (30%), Gaps = 26/269 (9%)

Query: 19  GKACASALEDAGFKV------SQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFG 63
             A  S  +     +        I  D+S    L            K D  F   +G   
Sbjct: 33  AIAVYSTADKEAHYLDLADAKVCIGGDKSSESYLNIPAIISAAELFKVDAIFPG-YGFLS 91

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMD 119
           E+     I     I +         L  DK ++K+V+   GVPV P     +      + 
Sbjct: 92  ENQNFVEICNHHGIEFIGPTPDVMVLMSDKSKAKEVMKKAGVPVVPGSDGAVESKEQAIK 151

Query: 120 SQHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
               I  P ++K   GG   G+ +    +   +  L     +    GD  +  +      
Sbjct: 152 LAKEIGYPVILKAAAGGGGRGMRIVESEENMFNAYLAAESEAISAFGDGTIYMEKFIDKP 211

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               V   A        +   +      +             +     +++ + A  A +
Sbjct: 212 KHIEVQVIADKCG--NVLHIGERDCSLQRRHQKLIEESPAPTLEPKTREKLLQTAITATK 269

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AI   G    +FL D  ++  +++E+N +
Sbjct: 270 AIKYVGAGTYEFLLD-SNQNFYFMEMNTR 297


>gi|218296632|ref|ZP_03497350.1| acetyl-CoA carboxylase, biotin carboxylase [Thermus aquaticus
           Y51MC23]
 gi|218242945|gb|EED09478.1| acetyl-CoA carboxylase, biotin carboxylase [Thermus aquaticus
           Y51MC23]
          Length = 445

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 70/215 (32%), Gaps = 8/215 (3%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +            DK  +++V    GVP  P    
Sbjct: 76  AIHPGYGFLAENATFAEMCREHGITFIGPTPENMRALGDKATARKVAREAGVPTVPGTDE 135

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +        +   I  P ++K   GG   G+ V+  ++ +   +LQ+             
Sbjct: 136 VESVEEAKRAALEIGYPVILKASAGGGGRGMRVVHTEEDLERAVLQAQEEARAAFGNPAV 195

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++   +      +  +      V         ++          P+ +PL+  + +   
Sbjct: 196 YLE-KYIEEPKHIEIQVLGDGERVVHLWERDCSIQRRHQKLLEEAPSILPLETRRAIAEA 254

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A    + +G       +FL D      +++E+N +
Sbjct: 255 ARRLAEHVGYVSAGTLEFLVDKEGN-FYFIEMNTR 288


>gi|149176613|ref|ZP_01855225.1| pyruvate carboxylase [Planctomyces maris DSM 8797]
 gi|148844492|gb|EDL58843.1| pyruvate carboxylase [Planctomyces maris DSM 8797]
          Length = 1150

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/242 (14%), Positives = 82/242 (33%), Gaps = 8/242 (3%)

Query: 30  GFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
           G  V   +D+  ++  +    K D      +G   E+       E   I +    +    
Sbjct: 59  GHPVKSYLDI-EAIIALAKQKKIDAIHPG-YGFLSENADFAQACEDAGIIFIGPRVETLK 116

Query: 89  LSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
              DK+ ++++    GVPV       I+       + + I  P ++K   GG   G+ V+
Sbjct: 117 ALGDKISARKIAQQVGVPVLGGSGEAIVDAASGRKTANEIGFPIILKAAHGGGGRGMRVV 176

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
           +K++        + S +       + +V+        +    L      +         +
Sbjct: 177 QKEEDFEASYELARSESLSAFGSEDVFVEKFISRARHIEVQLLGDKHGGLVHLYERDCSV 236

Query: 205 KYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +        + PA      +   +   A    Q++        +FL D  + + +++E+N
Sbjct: 237 QRRHQKVVEIAPAPNLDPAVRDALCEAALKIGQSVNYELAGTVEFLLDADTNQFYFIEVN 296

Query: 264 VQ 265
            +
Sbjct: 297 PR 298


>gi|19114183|ref|NP_593271.1| acetyl-CoA/biotin carboxylase [Schizosaccharomyces pombe 972h-]
 gi|12644351|sp|P78820|ACAC_SCHPO RecName: Full=Acetyl-CoA carboxylase; Short=ACC; AltName: Full=Cell
           untimely torn protein 6; Includes: RecName: Full=Biotin
           carboxylase
 gi|4038623|emb|CAB16395.1| acetyl-CoA/biotin carboxylase [Schizosaccharomyces pombe]
          Length = 2280

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  +   +       Q      G  + + +       L  
Sbjct: 252 AEKIGYPVMIKASEGGGGKGIRQVTSTEKFAQAFQQVLDELPGSPVFVMKLAGQARHLEV 311

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            K        + PA    +    ++R A    + +G
Sbjct: 312 QILADQYGNNISLFGRDCSVQRRHQKIIEEAPVTIAPAATFHE----MERAAVRLGELVG 367

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L++P + + ++LE+N +
Sbjct: 368 YASAGTIEYLYEPENDRFYFLELNPR 393


>gi|114566110|ref|YP_753264.1| biotin carboxylase [Syntrophomonas wolfei subsp. wolfei str.
           Goettingen]
 gi|114337045|gb|ABI67893.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 100/285 (35%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRS------------------------VGLVLAHLKPD 52
                 A ++ G +   +    D+                         +  ++A  +  
Sbjct: 14  ALRIIRACKELGIETVAVYSVADKDSLHVKQADEAICIGGAPARQSYLNISNIIAAAQNS 73

Query: 53  LAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
            A   +H   G   E+    ++     I +         L  DK++++++V S GVPV P
Sbjct: 74  GA-EAIHPGYGFLAENSHFASLCSSYNIKFIGPPPEVIELMGDKVQARELVKSVGVPVVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                +   +  +     I  P +IK   GG   G+ +   + S+   L  +       +
Sbjct: 133 GSDGAVQSYKEALAVAREIGYPVMIKASAGGGGKGMRLAHNESSLKNALEMARMEAGAAF 192

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  L +   +   +   ++GD   ++  +            + +         + + 
Sbjct: 193 GNDEIYLEKYIEEPRHIEFQILGDQLGNLIHLGERDCSLQ----RRNQKLLEEAPSSLLD 248

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +++ ++A  A +A G       +FL D  ++K +++E+N +
Sbjct: 249 EALRQQMGKVAVDAARAAGYSSAGTVEFLVD-KNKKFYFIEMNTR 292


>gi|332883341|gb|EGK03624.1| hypothetical protein HMPREF9456_01691 [Dysgonomonas mossii DSM
           22836]
          Length = 500

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/229 (13%), Positives = 73/229 (31%), Gaps = 7/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           + L+    K D      +G   E+           I +            DK+ +K + +
Sbjct: 73  LVLLAKRNKIDAIHPG-YGYLSENAEFATRCTEEGIIFIGPSPRIIQNMGDKITAKNIAA 131

Query: 102 SCGVPV----CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
              VP+      S+      ++    I  P +IK   GG   G+ +++K   +    L +
Sbjct: 132 KGNVPMLGGSNGSVSTLDEAIEISKSIGFPVIIKASAGGGGRGMRIVRKQSDLKQMYLSA 191

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           SS           +++        +    +  T   +         ++          P+
Sbjct: 192 SSEALAAFSNPSVFIEKYLENPKHIEIQIVADTHGNIIHLGERECSVQRKHQKLLEEAPS 251

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                ++ K++   A    +      +   +FL D      +++E+N +
Sbjct: 252 PALDDELRKKMTDAAVSLAREAKYISLGTVEFLLDKDKN-FYFMEMNTR 299


>gi|297529077|ref|YP_003670352.1| hypothetical protein GC56T3_0730 [Geobacillus sp. C56-T3]
 gi|297252329|gb|ADI25775.1| protein of unknown function DUF201 [Geobacillus sp. C56-T3]
          Length = 409

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                      +++         IS P VIKP+    S G+ + +  + + L L      
Sbjct: 124 HFREFLQPAFHIIHHPDEIINLEISFPCVIKPVDDSGSNGVTICQNRRDLELSLRHEWQR 183

Query: 161 NHGDQ-------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              ++        LIE++++G E +  ++             K  +  + ++   +    
Sbjct: 184 QRNERGYELARKWLIEEWIEGQEFSAEMLYTVDGWKLISVTKKETYGPHAVECGHVTGPK 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P     +  K++  L  L        G +  +F        ++ +E+N +        
Sbjct: 244 LNPFSDLEERCKKLLDLLGL------NYGAAHIEFFV--RGNNLYLVEVNPR---LAGDC 292

Query: 274 FPEMAA-YAGYSF 285
            PE+    AG   
Sbjct: 293 IPELVEFAAGVDM 305


>gi|241765724|ref|ZP_04763671.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax delafieldii
           2AN]
 gi|241364411|gb|EER59529.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax delafieldii
           2AN]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/217 (14%), Positives = 73/217 (33%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         +  DK+ +KQ +   GVP  P         
Sbjct: 82  YGFLSENADFAERVEKSGFQFIGPTPENIRMMGDKVSAKQAMIRAGVPCVPGSDGELPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                     +  P +IK   GG   G+ V+  + ++   +  + +     + +    + 
Sbjct: 142 PVQIRRIAKAVGYPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAAFGNPAVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   V+ D   +   +            K         +P      + +++ 
Sbjct: 202 KFLQNPRHIEIQVLADKFRNAVYLGERDCSMQRRHQKVIEEAPAPGIPR----KLIEKIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A + IG RG    +FL+   + + +++E+N +
Sbjct: 258 ERCVAACKKIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|327191842|gb|EGE58839.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli
           CNPAF512]
          Length = 397

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 17/264 (6%)

Query: 34  SQIDV-DRSVGLVL-AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             ID  D +V L L  +   D       GN         + E L  P     +  + +  
Sbjct: 51  HFIDYSDPNVLLALVENGDFDFVVPT--GNDVAYMSTTFVAEKLGFP-RFDSMETTTIIH 107

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            K   +       +P   S+ ++  +      +  P ++KP    S  G+  +     + 
Sbjct: 108 TKQAFRNFTEQNDIPAPRSVRLHDDSPVETGALRYPLLVKPSDSFSGRGVTKVFDRTELA 167

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  +   +   +++IE++++G      +   ++    +  V       Y   Y     
Sbjct: 168 DAIADARRNSRAAEIVIEEFIEG-----SLHSHSAFIKNQEIVFDVFVDEYCTVYPYQVD 222

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE-INVQPGMT 269
           +   P+++   +  + + +     + +G + G+  + FL       V+ +E +   PG  
Sbjct: 223 SSNHPSRLSETVRSKTRTIMARVIKLLGLQDGLIHTQFL--SNDDDVWIVECMRRCPGDL 280

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S+        G  + +L++ ++
Sbjct: 281 YGSLVDLSL---GIDYADLVITLL 301


>gi|317011281|gb|ADU85028.1| biotin carboxylase [Helicobacter pylori SouthAfrica7]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKHIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM+  A
Sbjct: 313 EMVSGLN---LIEWMIRIA 328


>gi|315124526|ref|YP_004066530.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
 gi|315018248|gb|ADT66341.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni ICDCCJ07001]
          Length = 482

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVAR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|290889766|ref|ZP_06552854.1| hypothetical protein AWRIB429_0244 [Oenococcus oeni AWRIB429]
 gi|290480590|gb|EFD89226.1| hypothetical protein AWRIB429_0244 [Oenococcus oeni AWRIB429]
          Length = 1064

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
           SG   + +L + G+ V  ++ + +                     +  +L   +PD    
Sbjct: 29  SGTQASLSLREEGYSVVLVNSNPATIMTDTEIADQVYIEPLTLPFIKRILRKERPDALLA 88

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            + G    +               +E+  T    + +A   +K +         VP    
Sbjct: 89  TIGGQTALNLAKELAEDGILEELKIELLGTKLKAIEAAEDREKFKQLMEALKEPVPESRI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     I  P +++P       G  +++  + +          +   Q+LIE+
Sbjct: 149 ARTLEQAVHFADQIGYPIIVRPAYTLGGTGGEIVENSEQLTEVAKNGLELSPVTQVLIEK 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   + V   + +     ++  +        +    Y+ ++  
Sbjct: 209 SIAG-YKEIEFEVMRDGNDNALIVASMENFDPVGIHTVDSIVVSPVQTLSDREYQMLRDA 267

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +A+   G        DP S + + +E+N  P ++  S     +   GY   ++  
Sbjct: 268 ALKIIRALKIEGGVNIQLALDPDSLRYYIIEVN--PRVSRSS--ALASKATGYPIAKMAA 323

Query: 291 WM 292
            +
Sbjct: 324 KI 325



 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/292 (12%), Positives = 90/292 (30%), Gaps = 32/292 (10%)

Query: 22  CASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFNVLHG 60
           C  A++ AG+K   I+ +                       V  V+   KP        G
Sbjct: 577 CVKAIQKAGYKAIVINSNPETVSTDFSVSDKLYFEPLTLEDVLNVIDLEKPIGVVVQFGG 636

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
               +   +     +++  T    +  +   +             P   +       +  
Sbjct: 637 QTAINLAGRLENNGVKLLGTSLKDINRSEDREDFNQVIKKLDLSQPFGKTATTVTQALSV 696

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P        + ++   Q +   + ++   +    +LI+ Y+   E    
Sbjct: 697 AEEVGYPLLIRPSYVLGGRAMEIVTNRQDLSDYMKRAVKVSLKHPVLIDSYLTVREAEID 756

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
           ++ D    +     P    +       S +S  V P++    ++ +++   AF   + + 
Sbjct: 757 LLSDGQTIIV----PGIMEHIERAGVHSGDSMSVYPSQYLDQNVQEQMLDAAFKLAKELH 812

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G+    F+      + + +E+N +   T     P ++        +L   
Sbjct: 813 TIGLMNVQFVIHEQ--QAYVIEVNPRASRT----LPFISKATDLPLAQLATR 858


>gi|283788102|ref|YP_003367967.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Citrobacter
           rodentium ICC168]
 gi|282951556|emb|CBG91255.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Citrobacter
           rodentium ICC168]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|269468557|gb|EEZ80206.1| biotin carboxylase [uncultured SUP05 cluster bacterium]
          Length = 452

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/281 (16%), Positives = 91/281 (32%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A ++ G K   +    D+ +  V LA            D   N           
Sbjct: 18  ALRILRACKELGIKTVAVYSTADKDLKHVRLADEAVCIGPHPSKDSYLNIPALISAAEVT 77

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E       +E     +         +  DK+ + + +    VP  P 
Sbjct: 78  HADAIHPGYGFLSESADFAQRVEESGFIFIGPRAENIRVMGDKVAAIEAMQKSSVPCVPG 137

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                      T++    I  P +IK   GG   G+ V++K++ +   +  +++      
Sbjct: 138 SDGALTDNTIKTIELARNIGFPIIIKASGGGGGRGMRVVEKEEDLLSSVELTTTEALNFF 197

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
              E Y++    T   +    L                ++          PA  I  ++ 
Sbjct: 198 GNPEVYMEKFLTTPRHVEIQILADEHGNAVHLGERDCSMQRRHQKVVEEAPAPGITPELR 257

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++   A +AI  RG    +FLF   + + +++E+N +
Sbjct: 258 NKIGKVCADACKAINYRGAGTFEFLF--ENNEFYFIEMNTR 296


>gi|257057021|ref|YP_003134853.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256586893|gb|ACU98026.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 665

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 28/188 (14%), Positives = 60/188 (31%), Gaps = 21/188 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP  GG   G+ ++     +P  +  +     G        V+       
Sbjct: 149 AERVGYPVLLKPSAGGGGKGMRLVHTPAELPAAVESAQREARGAFGDDRLLVERFVAEPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L  T   V         L+          P+ +   +    + + A  A +++G
Sbjct: 209 HIEIQVLADTHGTVVHLGERECSLQRRHQKIVEEAPSAVLDAETRARMGKAAVEAARSVG 268

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWM 292
             G    +F+    +  + F+LE+N +              +       G    +L+ W 
Sbjct: 269 YVGAGTVEFIVPASAPEEFFFLEMNTR----------LQVEHPVTELVTGL---DLVEWQ 315

Query: 293 VEDASCLR 300
           +  A+  R
Sbjct: 316 LRIAAGER 323


>gi|91215446|ref|ZP_01252417.1| Acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
 gi|91186398|gb|EAS72770.1| Acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 54/157 (34%), Gaps = 10/157 (6%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                 +   I  P ++K   GG   G+  +K +  +      +       + + D  + 
Sbjct: 141 FEDCKKTAKKIGYPVMLKATAGGGGKGMRAVKTEDKLEGAWESARQEAKAGFGNDDMYME 200

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++GD +     ++           +     +  V    +  ++ +++ 
Sbjct: 201 KLIEEPRHIEIQIVGDQTGRACHLSERDCSIQ----RRHQKLTEEVPSPFMTDELREKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A + I   G    +FL D      +++E+N +
Sbjct: 257 TAAVKAAEYIKYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|71065659|ref|YP_264386.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter arcticus 273-4]
 gi|71038644|gb|AAZ18952.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Psychrobacter arcticus 273-4]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K+  +   +  + +    +      Y++       
Sbjct: 149 ASDVGYPVIIKAASGGGGRGMRVVEKETDLLSAISMTQTEAKANFGSAIVYLEKYLQAPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +  T             ++          PA    +  ++    A   A + + 
Sbjct: 209 HIEVQVMSDTHGNAIYLGERDCSMQRRHQKVIEEAPAPGITEEQRQKIGQACVTACEQMQ 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + F++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|316934406|ref|YP_004109388.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris DX-1]
 gi|315602120|gb|ADU44655.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodopseudomonas
           palustris DX-1]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/219 (15%), Positives = 68/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHNLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +  +   M     I  P ++K   GG   G+ V      + L +  + +        
Sbjct: 135 DGAVGPDDDAMAIAQSIGFPVLVKAAAGGGGRGMKVAHTADDLALAISTAGNEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
              Y++        +    L                L+          P   I  +    
Sbjct: 195 ASVYLEKYLQKPRHIEIQILGDGRGGAIHLGERDCSLQRRHQKVWEESPSPVISAEARAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A Q +   G+   +FL+     + +++E+N +
Sbjct: 255 IGGICAKAMQDMQYLGVGTIEFLY--EDGEFYFIEMNTR 291


>gi|296806225|ref|XP_002843922.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Arthroderma otae CBS 113480]
 gi|238845224|gb|EEQ34886.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Arthroderma otae CBS 113480]
          Length = 1166

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 45/316 (14%), Positives = 92/316 (29%), Gaps = 42/316 (13%)

Query: 6   GGIS----SE--REVSLSS--GKACASALEDAGFKVSQIDVD------------------ 39
           GG+S     E    VS+ +  G     AL++AG K   I+ +                  
Sbjct: 89  GGLSIGQAGEFDYSVSMLTSAGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLP 148

Query: 40  ---RSVGLVLAHLKPDLAFNVLHGNFGED------GLVQAILELLEIPYTHSGILASALS 90
                V  V+   +PD  F    G    +       +       + +  T    L ++  
Sbjct: 149 VTPEYVSYVIERERPDGIFLAFGGQTALNLGVQMNRMGAFDRYGVRVLGTSIRTLETSED 208

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
            D            +    ++      +++   I  P +++       LG         +
Sbjct: 209 RDLFAKALKEIDIPIAESIAVSTVDDALEAASKIGYPIIVRSAYALGGLGSGFANGPDEL 268

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               L S S     Q+L+E+ + G                 I V   + +     ++  +
Sbjct: 269 RD--LSSRSLTLAPQILVEKSLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDS 325

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                   +  + Y  ++  A    + +G  G     +   P       +E+N +  ++ 
Sbjct: 326 IVVAPSQTLSDEEYHMLRTAAIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSR 383

Query: 271 VSIFPEMAAYAGYSFR 286
            S     +   GY   
Sbjct: 384 SS--ALASKATGYPLA 397


>gi|224024527|ref|ZP_03642893.1| hypothetical protein BACCOPRO_01252 [Bacteroides coprophilus DSM
           18228]
 gi|224017749|gb|EEF75761.1| hypothetical protein BACCOPRO_01252 [Bacteroides coprophilus DSM
           18228]
          Length = 389

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/254 (14%), Positives = 75/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A A      +V   +D D ++  V+A   PD+    +     E        ++  +
Sbjct: 39  AMQVADAC-----EVFSMLDGD-ALDKVVAKYHPDIIVPEIEAIRTERLYHLEKEDIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P VIKPL   S
Sbjct: 93  PSARAVNYTMNRKAIRDLAAKELGLKT-AKYFYATSFEELKEAAEKIGYPCVIKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  + K  + +          + GD   +        +             +      
Sbjct: 152 GKGQSIAKGPEDLSYSWEYGCMGSRGDIKELIVEE---FVKFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +   E Q +A    +A+   G+   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIAPEHLAEAQHMAAKVTEALTGYGLWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|187777419|ref|ZP_02993892.1| hypothetical protein CLOSPO_00986 [Clostridium sporogenes ATCC
           15579]
 gi|187774347|gb|EDU38149.1| hypothetical protein CLOSPO_00986 [Clostridium sporogenes ATCC
           15579]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|170749112|ref|YP_001755372.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           radiotolerans JCM 2831]
 gi|170655634|gb|ACB24689.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacterium
           radiotolerans JCM 2831]
          Length = 450

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/223 (15%), Positives = 70/223 (31%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +L   +I +            DK+ +K+     G+P  P  
Sbjct: 76  DAVHPG-YGFLSENARFAEVLAHHQIGFIGPKAQHIRTMGDKIEAKRTALKLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +            I  P ++K   GG   G+ V + +  +   +  + S     +  
Sbjct: 135 EGGVEDADTAKRVAAEIGYPVLVKAAAGGGGRGMKVARSEAELEQAIGMAKSEAKAAFGD 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               L +       +   V+GD       +A           K      +  L   +  +
Sbjct: 195 DAVYLEKYLEKPRHIEVQVLGDGRGGAVHLAERDCSLQRRHQKVWEEGGSPALNESMRAE 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I          A + +G  G    +FL+     + +++E+N +
Sbjct: 255 IGGICA----NAMKELGYLGAGTIEFLY--EDGRFYFIEMNTR 291


>gi|187479466|ref|YP_787491.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella avium
           197N]
 gi|115424053|emb|CAJ50606.1| biotin carboxylase [Bordetella avium 197N]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V+  + ++   +  + S     +N+ +  + +   +  
Sbjct: 149 AREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNPEVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            K         +P +    + + +      A 
Sbjct: 209 HVEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIPRR----LIERIGDRCADAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +G RG    +FLF   + + +++E+N +
Sbjct: 265 RKMGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|86130498|ref|ZP_01049098.1| pyruvate carboxylase [Dokdonia donghaensis MED134]
 gi|85819173|gb|EAQ40332.1| pyruvate carboxylase [Dokdonia donghaensis MED134]
          Length = 1150

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 81/234 (34%), Gaps = 6/234 (2%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + LA  K   A +  +G   E+           I +            DK+ +
Sbjct: 62  YLDMDQIIDLAKSKNVDAIHPGYGFLSENSEFARRCAKNGIIFIGPEPEVMDALGDKITA 121

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+V  SCGVP+  S      ++++       I  P ++K   GG   G+ +I+K++ + L
Sbjct: 122 KKVAQSCGVPIIESNKKALDSLETALSEAGKIGYPVMLKAASGGGGRGMRIIRKEEDLQL 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + +           +++        +    +  T   +         ++       
Sbjct: 182 SFDSARNEALNSFGDDTMFLEKYVEDPKHIEVQIVADTHGNIRHLYERDCSVQRRHQKVV 241

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P+      +   + + A      +    I   +FL D     ++++E+N +
Sbjct: 242 EMAPSYNLSQTLRDNLYKYAVAIATEVNYNNIGTVEFLVDADDN-IYFIEVNPR 294


>gi|326329774|ref|ZP_08196094.1| carbamoyl-phosphate synthase, large subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325952360|gb|EGD44380.1| carbamoyl-phosphate synthase, large subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 1111

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 41/298 (13%), Positives = 92/298 (30%), Gaps = 31/298 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG      L + G +V  ++ +                       V  V+A  +PD    
Sbjct: 29  SGTQACRVLREEGIRVVLVNSNPATIMTDPEFADATYVEPITPEFVEKVIAKERPDALLA 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            L G            + ILE  ++    + I A     ++   K++V+  G     S++
Sbjct: 89  TLGGQTALNCAVALDERGILEKYDVELIGATIDAIQRGENREEFKKIVAELGGESAKSVI 148

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            +     +    ++  P VI+P       G      +  +        + +   ++L+E+
Sbjct: 149 CHSIDDLLAGAEVLGYPLVIRPSFTMGGSGSGFAFDEADLRRLGGAGLAASPTTEVLLEE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   S D + I     +     +      +          +  K     
Sbjct: 209 SILGWKEYELEVMRDSKDNSVIVCSIENLDPMGVHTGDSITVAPAMTLTDREYQKLRDLA 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             +        G     +  +P   ++  +E+N  P ++  S     +   GY   ++
Sbjct: 269 IGIIRAVGVDTGGCNIQYAVNPADGRIIVIEMN--PRVSRSS--ALASKATGYPIAKI 322


>gi|217972030|ref|YP_002356781.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS223]
 gi|217497165|gb|ACK45358.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS223]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAINVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|71022335|ref|XP_761397.1| hypothetical protein UM05250.1 [Ustilago maydis 521]
 gi|46101266|gb|EAK86499.1| hypothetical protein UM05250.1 [Ustilago maydis 521]
          Length = 853

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 53/149 (35%), Gaps = 3/149 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ ++++   +  ++ ++ S    +    E   +      
Sbjct: 176 MAGKIGYPLMIKASSGGGGRGMRIVREPNQLASEIARARSEAQRNFGSSELLFERYIEGG 235

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP---AKIPLDIYKEVQRLAFLAHQ 236
             +           V         ++          P    +   ++ K + + A     
Sbjct: 236 KHIEVQIFGDNHGNVYALGERDCSVQRRHQKIIEESPAVDCEADPELRKRIHKSAVTIGS 295

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +G    +++FDP +++ F+LE+N +
Sbjct: 296 LLSYQGAGTVEYIFDPKTKEFFFLEVNTR 324


>gi|323144118|ref|ZP_08078757.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Succinatimonas
           hippei YIT 12066]
 gi|322416095|gb|EFY06790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Succinatimonas
           hippei YIT 12066]
          Length = 460

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 71/213 (33%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILV 113
           +G   E+     ++E     +         L  DK+ +K+ +   GVP  P         
Sbjct: 83  YGFLSENADFAEMVEKSGFIFIGPTADTIRLMGDKVSAKKAMQRAGVPCVPGSEGALGDD 142

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++      + I  P +IK   GG   G+ V++ D  +   +  +             Y++
Sbjct: 143 SKENHRLANEIGYPIIIKAAGGGGGRGMRVVRSDAELDDAIALTRREADMFFNNPAVYME 202

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAF 232
                   +    L  T             ++  +       P   I  +  K +     
Sbjct: 203 KFLENPRHIEFQVLSDTHGNAVYLGERDCSMQRRNQKVLEEAPAPFITAEQRKSIGERCA 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A   IG RG    +FL+   + + +++E+N +
Sbjct: 263 KACVDIGYRGAGTFEFLY--ENGEFYFIEMNTR 293


>gi|298364388|gb|ADI79330.1| chloroplast biotin carboxylase [Brassica oleracea]
          Length = 536

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ L   +     I +      +  +  DK  +++ + + GVP  P     +   
Sbjct: 153 YGFLAENALFVEMCREHRINFIGPNPDSIRVMGDKSTARETMKNAGVPTVPGSDGLLQST 212

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ +  +       L Q+ S     + +    L +
Sbjct: 213 EEGVRLANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDGVYLEK 272

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V               + +           +  ++ K +  
Sbjct: 273 YVQNPRHIEFQILADKFGNVVHFGECDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 328

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 329 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 363


>gi|294084609|ref|YP_003551367.1| acetyl-CoA carboxylase [Candidatus Puniceispirillum marinum
           IMCC1322]
 gi|292664182|gb|ADE39283.1| acetyl-CoA carboxylase [Candidatus Puniceispirillum marinum
           IMCC1322]
          Length = 446

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 19/156 (12%), Positives = 50/156 (32%), Gaps = 3/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +            +  P ++K   GG   G+ V +   ++      + +           
Sbjct: 138 VHTIDDARKVAADVGYPLLVKAASGGGGRGMKVAETADNLAEAFSAARAEAKAAFGDDTV 197

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQR 229
           Y++        +    +      V         ++          P+     D   ++  
Sbjct: 198 YLERYLGLPRHIEVQVIADAHGNVVHLGERECSIQRRHQKLFEEAPSPALTADERHKIGT 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A  A + +G  G+   +FL+   + + F++E+N +
Sbjct: 258 VAAEATRKLGYLGVGTMEFLY--ENGEFFFIEMNTR 291


>gi|255080392|ref|XP_002503776.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
 gi|226519043|gb|ACO65034.1| acetyl-coa carboxylase [Micromonas sp. RCC299]
          Length = 2189

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 57/146 (39%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
              +  P +IK  +GG   GI ++   + +    +Q  +   G  + I+Q   +   L  
Sbjct: 188 AKKVGFPLMIKASEGGGGKGIRMVSNMEELRTGFVQVQAEVPGSPVFIQQLSTNSRHLEV 247

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            V+ D   +   +            K        V P     ++ +E++R A    + + 
Sbjct: 248 QVVADKHGNAISLYGRDCSVQRRHQKIIEEGPVTVAPR----ELCEELERGAVRLAKKVR 303

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   ++L++  + +  +LE+N +
Sbjct: 304 YSGVGTVEYLYNITTGEYSFLEVNPR 329


>gi|237654140|ref|YP_002890454.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
 gi|237625387|gb|ACR02077.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
          Length = 662

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 52/183 (28%), Gaps = 20/183 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D+          +           +++   L   
Sbjct: 148 AKKIGYPVMIKASAGGGGKGLRVAFNDKEAHEGFASCVNEARNAFGDDRVFIEKYVLEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +       +     ++          P+       ++     A    +A+ 
Sbjct: 208 HIEIQVLGDSHGNYVYLNERDCSIQRRHQKVIEEAPSPFVDPAMRKAMGEQAVALARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +F+    +++ ++LE+N +              +       G    +L+  M+
Sbjct: 268 YESAGTVEFVVSGATKEFYFLEMNTR----------LQVEHPVTELITGL---DLVEQMI 314

Query: 294 EDA 296
             A
Sbjct: 315 RVA 317


>gi|223043834|ref|ZP_03613876.1| pyruvate carboxylase [Staphylococcus capitis SK14]
 gi|222442738|gb|EEE48841.1| pyruvate carboxylase [Staphylococcus capitis SK14]
          Length = 1149

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/231 (12%), Positives = 68/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIEVAKRAGVDAIHPG-YGFLSENEQFARRCAEENIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P     I               P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIESFEAAKQFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDELGNIIHLYERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      + F++E+N +
Sbjct: 246 PSVGLSNSLRERICEAAIQLMENIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|254368511|ref|ZP_04984528.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
 gi|157121405|gb|EDO65606.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. holarctica FSC022]
          Length = 386

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAVQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +P     + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDMGM 282


>gi|89255532|ref|YP_512893.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica LVS]
 gi|115314048|ref|YP_762771.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica OSU18]
 gi|156501470|ref|YP_001427535.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica FTNF002-00]
 gi|167010308|ref|ZP_02275239.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica FSC200]
 gi|254366958|ref|ZP_04982995.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|290954295|ref|ZP_06558916.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica URFT1]
 gi|295312274|ref|ZP_06803068.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica URFT1]
 gi|122325890|sp|Q0BP50|PURT_FRATO RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123401651|sp|Q2A5V8|PURT_FRATH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|171769921|sp|A7N9C6|PURT_FRATF RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|89143363|emb|CAJ78533.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica LVS]
 gi|115128947|gb|ABI82134.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. holarctica OSU18]
 gi|134252785|gb|EBA51879.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. holarctica 257]
 gi|156252073|gb|ABU60579.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. holarctica FTNF002-00]
          Length = 386

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAVQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +P     + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|103486924|ref|YP_616485.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingopyxis alaskensis
           RB2256]
 gi|98977001|gb|ABF53152.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingopyxis alaskensis
           RB2256]
          Length = 454

 Score = 47.6 bits (111), Expect = 0.002,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + S+   + Q+SS           Y++       
Sbjct: 149 AREIGYPVLIKAASGGGGRGMKVVPDEDSLESLMGQASSEAAAAFGDPTVYMEKYLGNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +        +            L+          P   I  +    + ++   A   +G
Sbjct: 209 HIEFQVFGDGKGNAIHLGERDCSLQRRHQKVLEEAPSPIISAEERARMGKVCADAMATMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + F++E+N +
Sbjct: 269 YRGAGTIEFLW--ENGEFFFIEMNTR 292


>gi|317009692|gb|ADU80272.1| biotin carboxylase [Helicobacter pylori India7]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLGESV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 316 EMVSGLN---LIEWMIKIA 331


>gi|317133556|ref|YP_004092870.1| acetyl-CoA carboxylase, biotin carboxylase [Ethanoligenens
           harbinense YUAN-3]
 gi|315471535|gb|ADU28139.1| acetyl-CoA carboxylase, biotin carboxylase [Ethanoligenens
           harbinense YUAN-3]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/277 (14%), Positives = 77/277 (27%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +        + A +  +                             
Sbjct: 17  IIRACRELGIRTVAVYSQADKNALHAEIADEAVCIGPAPSRDSYLNMGAILAACELTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   + +      +  L  DK R+++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENARFAYLCKRCNVIFIGPDASSIELMGDKARARETMQKAGVPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I            I  P ++K   GG   GI  +     +   +  +            
Sbjct: 137 LIESLEDARKVADAIGYPVMVKATAGGGGRGIREVHTPDEMEDAIAAARGEAGASFGNEG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            Y++   +    +    L                L+          PA I  D  + V  
Sbjct: 197 VYLEKYIIDPHHVEIQILADQAGNTVYLGERDCSLQRRHQKVLEESPAIILDDKMRRVMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A   +     +FL D  +   +++E+N +
Sbjct: 257 ETAVRAAKACRYQNAGTIEFLVD-KNHNFYFMEMNTR 292


>gi|290476766|ref|YP_003469677.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           bovienii SS-2004]
 gi|289176110|emb|CBJ82915.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           bovienii SS-2004]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAASAKSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   + + GVP  P 
Sbjct: 74  CAQAIHPGYGFLSENADFAEQVERSGFVFIGPKAETIRLMGDKVSAINAMKTAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGSLGNDTEKNKAIAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   +            ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKFLENPRHVEIQVLADGQGHALYLAERDCSMQRRHQKVVEEAPAPGISAELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RTIGERCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|261199396|ref|XP_002626099.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
 gi|239594307|gb|EEQ76888.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis SLH14081]
          Length = 671

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
            V     +      V         ++          PA +    + + V   A      I
Sbjct: 212 EVQI---IGDGTGQVRHLWERDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + ++LEIN +
Sbjct: 269 KYLSLGTFEFLVSGELSEFYFLEINPR 295


>gi|268590770|ref|ZP_06124991.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rettgeri DSM 1131]
 gi|291313546|gb|EFE53999.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Providencia
           rettgeri DSM 1131]
          Length = 448

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    D  +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSTADSDLKHVLLADETICIGPAASAKSYLNIPAIISAAEIS 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAQAIHPGYGFLAENADFAEQVENSGFVFIGPKAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLGNDTEKNKAIAKRIGFPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKSAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    +   +            ++          PA  I  +I 
Sbjct: 194 NNDMVYMEKFLENPRHIEIQVMADGQGHAVYLAERDCSMQRRHQKVVEEAPAPGITPEIR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 254 RNIGERCANACIEIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|326498821|dbj|BAK02396.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 726

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 45/313 (14%), Positives = 91/313 (29%), Gaps = 51/313 (16%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLV------------LAH---LKPDLAFNVL------ 58
                ++ G K   +  DVD +   V            LA    L+ D+  + +      
Sbjct: 72  VIRTCKEMGIKTVAVHSDVDSNSLFVRMADEAVCIGPALAKQSYLREDIILDAVKKTGAE 131

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
                +G   E+      L    + +      +     DK+ SK +     + + P    
Sbjct: 132 AVHPGYGFLSENTKFAKKLADHNVEFIGPSSKSIEAMGDKIHSKIIARKANISMIPGYDG 191

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                   +   + I  P +IK   GG   G+ V   D+    +   S            
Sbjct: 192 EVKDEEECVRVSNDIGYPVMIKASAGGGGKGMRVAWNDKEARENFRLSKGEAASSFGDDR 251

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
             V+        +    L      +   +     ++  +       P+     +  +++ 
Sbjct: 252 MLVEKFIDNPRHIEFQILGDKHGNIVYLNERECSIQRRNQKVIEEAPSVFLDPETRRKMG 311

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A     A+G       +F+ D      ++LE+N       P +T         A  G 
Sbjct: 312 EEAVQLAHAVGYYSAGTVEFMVDSKRN-FYFLEMNTRLQVEHP-ITE--------ATTGI 361

Query: 284 SFRELLLWMVEDA 296
              +++  M+  A
Sbjct: 362 ---DIVHQMIRVA 371


>gi|325955071|ref|YP_004238731.1| acetyl-CoA carboxylase, biotin carboxylase [Weeksella virosa DSM
           16922]
 gi|323437689|gb|ADX68153.1| acetyl-CoA carboxylase, biotin carboxylase [Weeksella virosa DSM
           16922]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+  + K++ +      + +     + +    + +   +  
Sbjct: 148 AREIKFPVMLKATAGGGGKGMRAVWKEEDLLSAWESARTEAAAAFGNDGMYMEKLIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD       ++           + +           +  ++ K +   A  A 
Sbjct: 208 HIEIQVAGDQFGKACHLSERDCSIQ----RRNQKLVEETPSPIMTEELRKRMGEAAIKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG  G+   +FL D      +++E+N +
Sbjct: 264 EFIGYEGVGTIEFLVDKH-GDFYFMEMNTR 292


>gi|298385550|ref|ZP_06995108.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
 gi|298261691|gb|EFI04557.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
          Length = 429

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/236 (12%), Positives = 80/236 (33%), Gaps = 10/236 (4%)

Query: 29  AGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            G+++  +    +       L  +              L        ++      I  S 
Sbjct: 43  NGYQIIDVKDKEACLAYARRLNINGVLT----WGATLSLPTVSYIGEKLGLPCMPIETSN 98

Query: 89  LSMDKMRSKQVVSSCGVPVCPSIL-VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           +SM+K + ++ ++  G+     I  +      ++HL+  P V+KP  G  S G+ ++  +
Sbjct: 99  ISMNKYQIRKRLNEYGLNSGGEIFEIRNKEEINKHLLKIPCVVKPSDGSGSKGVKIVFDN 158

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   +  +   +  +++ +E ++ G E +               +       +     
Sbjct: 159 SELESAIQYAFEESRNNEIYVEPFISGEEFSVEAYVCQREVYIYSIM----KTEFRWHEF 214

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFDPLSRKVFWLEI 262
               +      +  D+   ++     A +A+G   G    D +   L  K + +++
Sbjct: 215 FPEYSQTTYLDVSQDMEFLIEEEIKTAVKALGLNFGPVNFDLIVSSLDGKPYIIDV 270


>gi|237730173|ref|ZP_04560654.1| acetyl CoA carboxylase [Citrobacter sp. 30_2]
 gi|226908779|gb|EEH94697.1| acetyl CoA carboxylase [Citrobacter sp. 30_2]
          Length = 462

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 27  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 86

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 87  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 146

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 147 SDGPLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 207 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 262

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 263 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 305


>gi|303278045|ref|XP_003058316.1| acetyl-coa carboxylase [Micromonas pusilla CCMP1545]
 gi|226460973|gb|EEH58267.1| acetyl-coa carboxylase [Micromonas pusilla CCMP1545]
          Length = 2093

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/215 (14%), Positives = 69/215 (32%), Gaps = 8/215 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D+AF    G   E            +      +     S   +    +     + +  ++
Sbjct: 120 DIAFL---GPSAESMDAVGDKICANLLAQSCDVNVIPWSGSGLTVPDITIPEDILLEATL 176

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ- 170
                   S   I  P ++K  +GG   GI ++     +    +Q  +   G  + I+Q 
Sbjct: 177 ATVEEAEASAMKIGFPLMVKASEGGGGKGIRMVSNMDELRTGFVQVQAEVPGSPIFIQQL 236

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +   L   V+ D   +   +            K        V P     +  +E++  
Sbjct: 237 STNSRHLEVQVVADKHGNAISLYGRDCSVQRRHQKIIEEGPVTVAPR----ETCEELESG 292

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A    + +   G+   ++L++  +    +LE+N +
Sbjct: 293 AVRLAKKVKYSGVGTVEYLYNITTGVYSFLEVNPR 327


>gi|164686578|ref|ZP_02210606.1| hypothetical protein CLOBAR_00170 [Clostridium bartlettii DSM
           16795]
 gi|164604307|gb|EDQ97772.1| hypothetical protein CLOBAR_00170 [Clostridium bartlettii DSM
           16795]
          Length = 1151

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/239 (16%), Positives = 86/239 (35%), Gaps = 14/239 (5%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +D    + LA  K   A +  +G   E+       E   I +            DK+ 
Sbjct: 63  VYLDMDGIIALAKEKNVDAIHPGYGFLAENSEFVRKCEENGIAFIGPSADIMDKMGDKIN 122

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK+V  +  VP  P +     T++    ++     P ++K   GG   G+ V+  ++ + 
Sbjct: 123 SKKVAHAADVPTIPGVDKVIETVEEAKKVADYVGYPVMVKASNGGGGRGMRVVYNEKDLA 182

Query: 152 LDLLQSSSWNHGDQ-----LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
           L+   + S +          + +  VD   +   ++GD   ++  +            K 
Sbjct: 183 LEYETACSESRKAFGKAVIFIEKYIVDPKHIEVQILGDKEGNIVHLYERDCSVQRRHQKI 242

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   LP     ++ + +   A    +++G       +FL D      +++E+N +
Sbjct: 243 IEYAPAFSLPK----EVRENICNDAVKIAKSVGYVNAGTLEFLVDAEGNH-YFIEMNPR 296


>gi|163751164|ref|ZP_02158393.1| acetyl-CoA carboxylase [Shewanella benthica KT99]
 gi|161328993|gb|EDQ00066.1| acetyl-CoA carboxylase [Shewanella benthica KT99]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/226 (15%), Positives = 72/226 (31%), Gaps = 17/226 (7%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K D      +G   E+      +E     +         L  DK+ +   + + GVP  P
Sbjct: 81  KVDAIHPG-YGFLSENADFAEQVEACGFSFIGPTAAVIRLMGDKVSAISAMKAAGVPTVP 139

Query: 110 SILVNRFTM-----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
                            + I  P +IK   GG   G+ V+  +  +   +  + +     
Sbjct: 140 GSDGMLSNDSVLNKRIANKIGYPVIIKATAGGGGRGMRVVHDEAELIPAIGLTQAEAKAA 199

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           + +GD  + +       +   V+ D   +   +            K         + +  
Sbjct: 200 FANGDVYMEKYLQTPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQKVIEEAPALGIDSDT 259

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +I     +        IG RG    +FL++    + +++E+N +
Sbjct: 260 RREIGALCAKACVD----IGYRGAGTFEFLYEA--GQFYFIEMNTR 299


>gi|118603020|ref|YP_904235.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Candidatus Ruthia magnifica str. Cm
           (Calyptogena magnifica)]
 gi|118567959|gb|ABL02764.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Candidatus Ruthia magnifica str. Cm (Calyptogena
           magnifica)]
          Length = 454

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +       L    L  +                          
Sbjct: 19  ALRVLRACKELGIKTVAVYSTADKDLKHVRLSNEAVCIGPHQSKDSYLNIPALIAAAEIT 78

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E       +E     +         +  +K+ + + +   GVP  P 
Sbjct: 79  HADAIHPGYGFLSESADFAQQVEKSGFIFIGPHADNIRVMGNKVAAIKTMQKSGVPCVPG 138

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++K+ ++   +  S        
Sbjct: 139 SNAGLTEDAAQNTKLARNIGFPIIIKASGGGGGRGMRVVEKETNLLDSIELSKIEALNFF 198

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
              E Y++    T   +    L      V         ++          PA  I  ++ 
Sbjct: 199 NNSEVYMEKFLTTPRHIEIQILADEHGNVVHLGERDCSMQRRHQKVVEEAPAPGITSELR 258

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++      A + I  RG    +FLF   + + +++E+N +
Sbjct: 259 QKIGSACTDACKTINYRGAGTFEFLF--ENDEFYFIEMNTR 297


>gi|68535304|ref|YP_250009.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium K411]
 gi|123775764|sp|Q4JXR6|PURT_CORJK RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|68262903|emb|CAI36391.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium K411]
          Length = 411

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 80/281 (28%), Gaps = 32/281 (11%)

Query: 19  GKACASALEDAGFKVSQ------------------IDVDRS--VGLVLAHLKPDLAFNVL 58
           G+  A AL+  G +V                    +D+     +  ++  + P       
Sbjct: 27  GRELAIALQRLGIEVHAADRYAGAPAHLVANKAHVLDIHDEDAIRQLVREVGPHFVIP-- 84

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSILVNR 115
             +      V   +E  E+       LA+ L+M++   +                     
Sbjct: 85  -DSETIPAEVLQEIETNEVASVVPTALANRLTMNREGIRTFAHDKLGLPNSTFRFASTAD 143

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVD 173
               +   I  P V+KP+   S  G   +     +          S  +  ++++EQY+ 
Sbjct: 144 ELARAAEEIGYPCVVKPVMSSSGAGQSYVGGVDELEAAWNAALKHSRTNAQRVMVEQYIP 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  +   +    T              +          PA +  D     + +A  
Sbjct: 204 FDYEVTILAVRSIDPATGREATWFCEPIGHRQDRGDYVESWQPAHMSEDALDTARSIAAR 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIF 274
              A+G RG+   +         V++ E+   P +    + 
Sbjct: 264 IATALGGRGVYGVELFV--KGDDVYFSEV--SPRLHDTGMV 300


>gi|308183189|ref|YP_003927316.1| biotin carboxylase [Helicobacter pylori PeCan4]
 gi|308065374|gb|ADO07266.1| biotin carboxylase [Helicobacter pylori PeCan4]
          Length = 458

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKIVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 316 EMVSGLN---LIEWMIKIA 331


>gi|134301182|ref|YP_001121150.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis WY96-3418]
 gi|172044160|sp|A4IVS8|PURT_FRATW RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|134048959|gb|ABO46030.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis WY96-3418]
          Length = 386

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +P     + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|325110125|ref|YP_004271193.1| pyruvate carboxylase [Planctomyces brasiliensis DSM 5305]
 gi|324970393|gb|ADY61171.1| pyruvate carboxylase [Planctomyces brasiliensis DSM 5305]
          Length = 1184

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 1/147 (0%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K  KGG   G+ V++ +  +      +           + +++      
Sbjct: 187 QAEELGYPVILKAAKGGGGRGMRVVRSEDELVPAFESAQHEAKTAFGSGDVFIEKFIERA 246

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAI 238
             +    L      +         ++        + PA    D   K +   A    + +
Sbjct: 247 RHIEVQILGDQHGNLTHLFERDCSVQRRHQKVVEMAPAPKLSDKARKTLLESALAIGKVV 306

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +FL D  + +V+++E+N +
Sbjct: 307 NYHAAGTVEFLVDAATEEVYFIEVNPR 333


>gi|296278671|gb|ADH04299.1| carbamoylphosphate synthetase [Epicopeia hainesii]
          Length = 976

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYHVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALAAAIQIGYPVMARSAFSLGGMGSGFANNEEEL--KALAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPYSEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|119897153|ref|YP_932366.1| acetyl-CoA carboxylase biotin carboxylase subunit [Azoarcus sp.
           BH72]
 gi|119669566|emb|CAL93479.1| probable biotin carboxylase (a subunit of acetyl-coa carboxylase)
           [Azoarcus sp. BH72]
          Length = 453

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 ARAIGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTTTRAEAGAAFGNPTVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I   +  ++      A + IG
Sbjct: 209 HVEIQVLADQHGNAVYLGERDCSMQRRHQKVIEEAPAPGIDRKLIAKIGERCAEACRKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|91794312|ref|YP_563963.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            denitrificans OS217]
 gi|91716314|gb|ABE56240.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
            denitrificans OS217]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 85/234 (36%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEEVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
                VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QEQNVPVVPGSHGILTNAEQAVNVATEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNTKVLGIRDCSVQRNNQKVIEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP      + ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ALKQQVLEYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|56459985|ref|YP_155266.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina loihiensis
           L2TR]
 gi|56178995|gb|AAV81717.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina loihiensis
           L2TR]
          Length = 656

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+ V++        L  +           +  ++       
Sbjct: 148 AEKVGFPLLLKAAYGGGGKGMRVVENMGEFDDALNSAKREAKSSFGNDKMLMERFIRNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +                     ++          PA    +  +      A  A QAI 
Sbjct: 208 HVEIQVFTDEHGNAVYLAERDCSVQRRHQKVLEEAPAPALTEKTRTEMGEAAIRAAQAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FLFD  S + +++E+N +
Sbjct: 268 YVGAGTVEFLFD-QSGEFYFMEMNTR 292


>gi|83592457|ref|YP_426209.1| pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83575371|gb|ABC21922.1| Pyruvate carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 1153

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 1/148 (0%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG   G+ VI     +   +              E Y++ + L 
Sbjct: 154 PMAEKVGYPLMLKASWGGGGRGMRVINTPDELERQVSAGRREAEAAFGNGEVYLEKLVLR 213

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
              +    L      V         ++  +       PA     +  +EV   A    +A
Sbjct: 214 ARHVEVQLLGDHYGTVVHLFERDCSVQRRNQKVVERAPAPYLTPEKREEVCEAALRLARA 273

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            G      ++FL D  +    ++E+N +
Sbjct: 274 AGYVCAGTAEFLMDADTGDFHFIEVNPR 301


>gi|85716167|ref|ZP_01047142.1| acetyl-CoA carboxylase [Nitrobacter sp. Nb-311A]
 gi|85697000|gb|EAQ34883.1| acetyl-CoA carboxylase [Nitrobacter sp. Nb-311A]
          Length = 451

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 68/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL    + +         L  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILADHRLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I  +   M     I  P ++K   GG   G+ ++K    + + +  + +        
Sbjct: 135 DGGIGPDDDAMAIAKAIGFPVLVKAAAGGGGRGMKIVKTADDLTMAISTAGNEARAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
              Y++        +    L      V         L+          P+       +  
Sbjct: 195 ASVYLEKYLQKPRHIEIQVLGDGRGGVIHLGERDCSLQRRHQKVWEEGPSPALTAAARNK 254

Query: 228 QRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  A   I  RG    +FL+     + +++E+N +
Sbjct: 255 IGEIVAKAMSEIRYRGAGTVEFLY--EDGRFYFIEMNTR 291


>gi|109896421|ref|YP_659676.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoalteromonas
           atlantica T6c]
 gi|109698702|gb|ABG38622.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pseudoalteromonas atlantica T6c]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    D S+  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADESLKHVLLADETICIGKPSATESYLNIPRIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ + + + + GVP  P 
Sbjct: 74  NSVAIHPGYGFLAENADFAEAVERSGFIFIGPKAETINLMGDKVSAIKSMKAAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V++ ++ +   +  +        
Sbjct: 134 SDGPLNDDEARNKKLAQGIGYPIIVKAAGGGGGRGMRVVRSEEELIGAIAATKGEAAAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   + +          ++          PA    +  +
Sbjct: 194 NNDVVYMEKFLENPRHVEIQILADGQGSAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FLF   + + +++E+N +
Sbjct: 254 AKIGARCCQACIDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|327355154|gb|EGE84011.1| Carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ATCC 18188]
          Length = 670

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
            V     +      V         ++          PA +    + + V   A      I
Sbjct: 212 EVQI---IGDGTGEVRHLWERDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + ++LEIN +
Sbjct: 269 KYLSLGTFEFLVSGELSEFYFLEINPR 295


>gi|325091289|gb|EGC44599.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus H88]
          Length = 1215

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 160 SGSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 219

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 220 TFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLFAKALNEINIPIAESVA 279

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 280 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 337

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 338 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 396

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 397 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 448


>gi|317501302|ref|ZP_07959505.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331088334|ref|ZP_08337253.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 3_1_46FAA]
 gi|316897266|gb|EFV19334.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330408578|gb|EGG88044.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/277 (11%), Positives = 76/277 (27%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +  +     +   L  +                             
Sbjct: 17  IIRACREMGIETVAVYSEADKEALHTQLADEAVCIGPAQASESYLNMQNLISAALVSGAD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E  EI +            +K  ++  + + G+PV      
Sbjct: 77  AIHPGFGFLSENAKFAELCEQCEITFIGPDSKVIGKMGNKTEARATMIAAGIPVIRGTNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +L           I  P +IK   GG   G+   + ++      + +            
Sbjct: 137 AVLDLEEGKKEAARIGYPVIIKAALGGGGKGMRTAQSEEEFESCFVTARKEAEKAFGDGT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   +         ++ +        P      ++ K++ 
Sbjct: 197 MYIEHFVEHPRHIEFQILADSYGNIVHLGERDCSIQRNHQKMIEECPCAALSDELRKKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL        +++E+N +
Sbjct: 257 ETAVKAARAAGYTNAGTVEFLL-EKDGTFYFMEMNTR 292


>gi|283836196|ref|ZP_06355937.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Citrobacter
           youngae ATCC 29220]
 gi|291067548|gb|EFE05657.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Citrobacter
           youngae ATCC 29220]
          Length = 449

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|254779638|ref|YP_003057744.1| biotin carboxylase [Helicobacter pylori B38]
 gi|254001550|emb|CAX29568.1| Biotin carboxylase (Acetyl-CoA carboxylase subunit A)(ACC)
           [Helicobacter pylori B38]
          Length = 455

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            + +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|240275452|gb|EER38966.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus H143]
          Length = 1182

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 186

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 187 TFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLFAKALNEINIPIAESVA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 247 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|239615469|gb|EEQ92456.1| carboxylase:pyruvate/acetyl-CoA/propionyl-CoA [Ajellomyces
           dermatitidis ER-3]
          Length = 671

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   GI  +K    +   L +++  +   ++ +E+   G     
Sbjct: 152 FAAEVGYPVMVKAVDGGGGRGIRFVKGPDELQSALDRATGESPSKKVFVEKAAVGGFHHV 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
            V     +      V         ++          PA +    + + V   A      I
Sbjct: 212 EVQI---IGDGTGEVRHLWERDCSVQRRFQKIVECAPAMMKDRGLIRRVIEAALRIASEI 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL      + ++LEIN +
Sbjct: 269 KYLSLGTFEFLVSGELSEFYFLEINPR 295


>gi|225561845|gb|EEH10125.1| carbamoyl-phosphate synthase [Ajellomyces capsulatus G186AR]
          Length = 1182

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 186

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 187 TFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLFAKALNEINIPIAESVA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 247 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|113969040|ref|YP_732833.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            MR-4]
 gi|113883724|gb|ABI37776.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
            MR-4]
          Length = 1517

 Score = 47.6 bits (111), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 89/234 (38%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
             S  VPV P            ++  + I  P ++K ++GG   GI V+K+ + +     +
Sbjct: 1065 QSQNVPVVPGSHGILTNAEQAVNVANEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 157  SSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
            +S+     + +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TSTEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ K+V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPE----ELKKQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|188527865|ref|YP_001910552.1| biotin carboxylase [Helicobacter pylori Shi470]
 gi|188144105|gb|ACD48522.1| biotin carboxylase [Helicobacter pylori Shi470]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|152999354|ref|YP_001365035.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS185]
 gi|151363972|gb|ABS06972.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS185]
          Length = 1517

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|146313328|ref|YP_001178402.1| acetyl-CoA carboxylase biotin carboxylase subunit [Enterobacter sp.
           638]
 gi|145320204|gb|ABP62351.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Enterobacter sp. 638]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLTDDMDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDTDLAQSIAMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|160873969|ref|YP_001553285.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS195]
 gi|160859491|gb|ABX48025.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella baltica
            OS195]
 gi|315266203|gb|ADT93056.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Shewanella
            baltica OS678]
          Length = 1517

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/234 (14%), Positives = 87/234 (37%), Gaps = 14/234 (5%)

Query: 41   SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            SV  V  + + D     + G   E     A+     + +    + +     +K  + +  
Sbjct: 1006 SVLKVAEYEQVDALHPGI-GFLSESPQFAALCVNNGVNFVGPSVHSMTTMGNKSNAIKTS 1064

Query: 101  SSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP----- 151
             +  VPV P            ++    I  P ++K ++GG   GI V+K+ + +      
Sbjct: 1065 QAQNVPVVPGSHGILTNAEQAVNVASEIGYPVLLKAVQGGGGKGIQVVKRPEDMIGLFQK 1124

Query: 152  LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                 ++++ +GD  L +       +   ++ D   +   + +          K    + 
Sbjct: 1125 TATEAAAAFGNGDLYLEKYVTSLRHIEVQLLRDKFGNAKVLGLRDCSVQRNNQKVVEESG 1184

Query: 212  THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + +LP     ++ ++V         A    G    +F+++  + +V+++E+N +
Sbjct: 1185 STMLPD----ELKRQVLAYTRALGDATDYMGAGTVEFIYNLDANEVYFMEMNTR 1234


>gi|18379053|ref|NP_563674.1| MCCA; methylcrotonoyl-CoA carboxylase [Arabidopsis thaliana]
 gi|332189407|gb|AEE27528.1| methylcrotonoyl-CoA carboxylase subunit alpha [Arabidopsis
           thaliana]
          Length = 714

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/159 (11%), Positives = 40/159 (25%), Gaps = 19/159 (11%)

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                            I  P +IKP  GG   G+ +++  +      L +         
Sbjct: 170 YHGHEQDIDHMKSEAEKIGYPIIIKPTHGGGGKGMRIVQSGKDFADSFLGAQREAAASFG 229

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +    ++        +           V         ++          PA         
Sbjct: 230 VNTILLEKYITRPRHIEVQIFGDKHGNVLHLYERDCSVQRRHQKIIEEAPAA-------- 281

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                      +G       +F+ D  S + +++E+N +
Sbjct: 282 -----------VGYYNAGTVEFIVDTESDQFYFMEMNTR 309


>gi|317402640|gb|EFV83199.1| hypothetical protein HMPREF0005_02226 [Achromobacter xylosoxidans
           C54]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + ++   +  + S         E Y++       
Sbjct: 149 AREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNPEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  I   + + +      A + +G
Sbjct: 209 HVEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLIERIGDRCADACRKMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317178612|dbj|BAJ56400.1| biotin carboxylase [Helicobacter pylori F30]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|300717069|ref|YP_003741872.1| phosphoribosylglycinamide formyltransferase 2 [Erwinia billingiae
           Eb661]
 gi|299062905|emb|CAX60025.1| Phosphoribosylglycinamide formyltransferase 2 [Erwinia billingiae
           Eb661]
          Length = 413

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 81/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++A  +PD     +
Sbjct: 45  GKEVALECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGEALKALVALERPDYIVPEI 104

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + ++             +   
Sbjct: 105 EAIATDMLIELEKQGQHVVPTARAARLTMNREGIRRLAAEELALPT-STYRFADSQQAFN 163

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I++   +        +   G        V+G+   
Sbjct: 164 QAADEIGFPCIVKPVMSSSGKGQSFIREASQLDAA--WEYAQQGGRAGAGRVIVEGVVKF 221

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  +++A    +A+
Sbjct: 222 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSALALQRAEQIAEEVVKAL 279

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 280 GGHGLFGVELFVC--GDEVVFSEVSPRPHDTGM 310


>gi|163801035|ref|ZP_02194935.1| 5'-phosphoribosylglycinamide transformylase [Vibrio sp. AND4]
 gi|159175384|gb|EDP60181.1| 5'-phosphoribosylglycinamide transformylase [Vibrio sp. AND4]
          Length = 391

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 79/283 (27%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                +D    +++  ++A  +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSYVIDMLDAQALEEIIAKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +              +   
Sbjct: 82  EAIATDKLVELERQGLNVVPTAKATKLTMNREGIRRLAAEELGLTT-SPYQFADNFKDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK      + +    +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKT--EADIQIAWDYAQQGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +        +  A     A+
Sbjct: 199 DYEITLLTVRAIDGVHFCAPIGHRQEDGDYRESWQ--PQAMSDSAINAAEYAAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|534939|emb|CAA55557.1| 5'-phosphoribosyl-1-glycinamide transformylase T [Bacillus subtilis
           subsp. subtilis str. 168]
          Length = 384

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 70/237 (29%), Gaps = 10/237 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           + V  +D    +  ++    PDL    +     ++ L         IP   +  L     
Sbjct: 49  YVVDMLDP-EQIRTIIEKENPDLIVPEVEAIATDELLKLEEEGFHVIPNARAAKLTMDRE 107

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
             +  + + +                 + +   I  P V+KPL   S  G  V + +  +
Sbjct: 108 GIRRLAAETLGLAT-AGYEFANTYDEFIQAAAQIGFPCVVKPLMSSSGKGQSVCRSEADL 166

Query: 151 PLDLLQSSSWNHGDQ-LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
                 +          +I +     E    ++   +++ T    P         +    
Sbjct: 167 ESCWETAMEGGRVKNGRVIVEEFIPFESEITLLTVRAVNGTAFCEPIGHV-----QKDGD 221

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 P  +     +E   +A      +G  G+   +        +V++ E++ +P
Sbjct: 222 YIESWQPHDMTEQQIEEANDIAKTITDELGGYGLFGVELFL--AKDRVYFSEVSPRP 276


>gi|33593927|ref|NP_881571.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           pertussis Tohama I]
 gi|33598423|ref|NP_886066.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           parapertussis 12822]
 gi|33603363|ref|NP_890923.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           bronchiseptica RB50]
 gi|33564001|emb|CAE43267.1| biotin carboxylase [Bordetella pertussis Tohama I]
 gi|33574552|emb|CAE39199.1| biotin carboxylase [Bordetella parapertussis]
 gi|33577487|emb|CAE34752.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|332383346|gb|AEE68193.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           pertussis CS]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 56/150 (37%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ V+  + ++   +  + S     +N+ +  L +   +  
Sbjct: 149 AREVGYPVIIKASGGGGGRGMRVVYTEAALLNAVNMTRSEAGAAFNNPEVYLEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            K         +P +    + + +      A 
Sbjct: 209 HVEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIPRR----LIERIGDRCADAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +G RG    +FL+   + + +++E+N +
Sbjct: 265 RKMGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|253731725|ref|ZP_04865890.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|253724539|gb|EES93268.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
          Length = 1150

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 71/231 (30%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A    + I        +FL      ++F++E+N +
Sbjct: 246 PSVGLSPTLRQRICDAAIQLMENIKYVNAGTVEFLV--SGDELFFIEVNPR 294


>gi|238024679|ref|YP_002908911.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           glumae BGR1]
 gi|237879344|gb|ACR31676.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Burkholderia
           glumae BGR1]
          Length = 485

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 43/145 (29%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +  +L  +             Y++       
Sbjct: 162 AGRIGYPIMIKAAAGGGGRGIRVAHDAAQLDAELPLAQREAQAAFGDGGVYLERFIACAR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L      V   +      +             +  +    +   A    + +G 
Sbjct: 222 HIEVQVLGDGHDVVHLFERECSLQRRRQKILEEAPSPSLTPEQRDALCTSATRLAREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           R     ++LFD    + +++E+N +
Sbjct: 282 RSAGTLEYLFDDARGEFYFIEMNTR 306


>gi|242310499|ref|ZP_04809654.1| acetyl-CoA carboxylase [Helicobacter pullorum MIT 98-5489]
 gi|239522897|gb|EEQ62763.1| acetyl-CoA carboxylase [Helicobacter pullorum MIT 98-5489]
          Length = 473

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/269 (14%), Positives = 92/269 (34%), Gaps = 20/269 (7%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D  + +  A      A +  +G   E+ L    ++   + +        A   DK  +
Sbjct: 59  YLDPDLIIQAAKATDSEAIHPGYGFLSENALFAKKVKEAGLVWIGPDSEVIAKMGDKNAA 118

Query: 97  KQVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           + ++ + G+PV P                   I  P ++K   GG   GI V+ ++  + 
Sbjct: 119 RNLMIANGIPVVPGTDPLNSLNLYEIQKIARKIGYPIILKASSGGGGRGIRVVWEENELE 178

Query: 152 LDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             L          + + D  + +   +   +   ++ D   ++  +            + 
Sbjct: 179 NALNACKREALTFFKNDDVFMEKYIQNPKHIEFQILADNYGNIIHLLERDCSIQ----RR 234

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ- 265
                       I  D+ + +  +A  A +A         +FL D  +   +++E+N + 
Sbjct: 235 HQKLIEIAPCPTISADLRRRMGVVAVAAARAANYTNAGTIEFLIDDSNN-FYFMEMNTRI 293

Query: 266 ---PGMT-PVSIFPEMAAYAGYSFRELLL 290
               G+T  ++    +A     ++ E+L 
Sbjct: 294 QVEHGVTEEITGLDLIARQIRIAYGEILD 322


>gi|124024837|ref|YP_001013953.1| acetyl-CoA carboxylase biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL1A]
 gi|123959905|gb|ABM74688.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Prochlorococcus
           marinus str. NATL1A]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 42/145 (28%), Gaps = 6/145 (4%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  P +IK   GG   G+ ++     +          +    G+  L  +          
Sbjct: 152 MGYPVMIKATAGGGGRGMRLVTHSDELENLFKAAQGEAEAAFGNPGLYMEKFIDRPRHVE 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V   A        V   +      +             +   +   +   A  A ++I  
Sbjct: 212 VQILADRFG--NVVHLGERDCSIQRRHQKLLEESPSPALDDHLRIRMGEAAVAAAKSINY 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +FL D      +++E+N +
Sbjct: 270 EGAGTVEFLLDRH-GSFYFMEMNTR 293


>gi|56421297|ref|YP_148615.1| hypothetical protein GK2762 [Geobacillus kaustophilus HTA426]
 gi|56381139|dbj|BAD77047.1| hypothetical conserved protein [Geobacillus kaustophilus HTA426]
          Length = 408

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                      +++         IS P VIKP+    S G+ + +  + + L L      
Sbjct: 123 HFREFLQPAFHIIHHPDEIINLEISFPCVIKPVDDSGSNGVTICQNRRDLELSLRHEWQR 182

Query: 161 NHGDQ-------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              ++        LIE++++G E +  ++             K  +  + ++   +    
Sbjct: 183 QRNERGYELARKWLIEEWIEGQEFSAEMLYTVDGWKLISVTKKETYGPHAVECGHVTGPK 242

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P     +  K++  L  L        G +  +F        ++ +E+N +        
Sbjct: 243 LNPFSGLEERCKKLLDLLGL------NYGAAHIEFFV--RGNNLYLVEVNPR---LAGDC 291

Query: 274 FPEMAA-YAGYSF 285
            PE+    AG   
Sbjct: 292 IPELVEFAAGVDM 304


>gi|56478716|ref|YP_160305.1| biotin carboxylase subunit of unknown acetyl-CoA carboxylase-like
           enzyme [Aromatoleum aromaticum EbN1]
 gi|56314759|emb|CAI09404.1| Biotin carboxylase subunit of unknown acetyl-CoA carboxylase-like
           enzyme [Aromatoleum aromaticum EbN1]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 42/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  +  +  +      +SS           +++       
Sbjct: 147 ARKIGFPLLVKAAFGGGGRGMKQVHDEAGLAAAWELASSEASASFGDGTVFIERFVQAAK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L                L++         P      +  + +   A     A+ 
Sbjct: 207 HVEVQILGDAHGHRIHLAERECSLQFRYQKILEEAPCVALSDEARQRLHDYALRIADALD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   +FL D     + +LE+N +
Sbjct: 267 YVSLGTVEFLVDVERGDICFLEVNPR 292


>gi|86150487|ref|ZP_01068712.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|85839082|gb|EAQ56346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni CF93-6]
 gi|284926267|gb|ADC28619.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni IA3902]
          Length = 481

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 84/253 (33%), Gaps = 25/253 (9%)

Query: 24  SALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            A+   G+  V +I        +      D      +G   E+       E   I +   
Sbjct: 56  DAIR--GYLDVVRI------VEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGP 106

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGS 137
                    +K  ++++++  G+P+ P                   I  P ++K   GG 
Sbjct: 107 KSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGG 166

Query: 138 SLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GI V+ K+Q +              +N+ +  + +  V+   +   ++GD   ++  +
Sbjct: 167 GRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHL 226

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                       +             I  ++ K +   A  A +A+G       +FL D 
Sbjct: 227 CERDCSIQ----RRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD 282

Query: 253 LSRKVFWLEINVQ 265
              + +++E+N +
Sbjct: 283 Y-NRFYFMEMNTR 294


>gi|332292841|ref|YP_004431450.1| carbamoyl-phosphate synthase, large subunit [Krokinobacter
           diaphorus 4H-3-7-5]
 gi|332170927|gb|AEE20182.1| carbamoyl-phosphate synthase, large subunit [Krokinobacter
           diaphorus 4H-3-7-5]
          Length = 950

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/255 (13%), Positives = 79/255 (30%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQTALKLAEKLDRYGIKILGTSYKALD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A       +     +   P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSTLLKDLNIPYPEFDVAETADEALAVAAKLDYPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
           D  +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 DNELEEHVVDLLRKIPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCGIHSG 799

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               ++  + P  +   + ++++        A+   G+    F       KVF +E N +
Sbjct: 800 ---DSNATLPPFNLGDLVMEQIKDHTRKIALALDTVGLINIQFAV--KDDKVFIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|22094606|gb|AAM91937.1|AF525420_8 CpsL [Xenorhabdus nematophila]
          Length = 965

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/289 (11%), Positives = 92/289 (31%), Gaps = 31/289 (10%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL + G++   +         D D              V  ++   KP        G   
Sbjct: 479 ALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRVEKPTGVIVQYGGQTP 538

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                +     + I  T    +  A   ++ +          P   ++      ++    
Sbjct: 539 LKLARELKAAGVPIIGTSXDAIDRAEDRERFQQAVNRLGLKQPANVTVTTIEQAVEKGKA 598

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVM 182
           I  P V++P        + ++  +  +      + S ++   +L+++++D  IE+    +
Sbjct: 599 IGYPLVVRPSYVLGGRAMEIVYDETDLRRYFQTAVSVSNDAPVLLDRFLDDAIEVDVDAI 658

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  ++  +    +  +I   +++        +  RG
Sbjct: 659 CDGERVLIGGIMEHIEQAG---VHSGDSACSLPAYTLSQEIQDVMRQQVEKLAFELRVRG 715

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +    F     + +V+ +E+N +   T     P ++   G    ++   
Sbjct: 716 LMNVQFAV--KNNEVYLIEVNPRAART----VPFVSKATGRPLAKVAAR 758



 Score = 43.7 bits (101), Expect = 0.029,   Method: Composition-based stats.
 Identities = 25/183 (13%), Positives = 58/183 (31%), Gaps = 13/183 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +I+P       G  +    +       +    +  ++LLI++ + G +    
Sbjct: 50  AEDVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDESLIGWKEYEM 109

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +     D   I     +F    +      +          +          +  +    
Sbjct: 110 EVVRDKNDNCIIVCSIENFDPMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVE 169

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPEMAA--YAGYSFRELL 289
            G S   F  +P + ++  +E+N  P ++  S            ++AA    GY+  EL+
Sbjct: 170 TGGSNVQFAVNPKNGRLIVIEMN--PRVSRSSALASKATGFPIAKIAAKLAVGYTLDELM 227

Query: 290 LWM 292
             +
Sbjct: 228 NDI 230


>gi|57237923|ref|YP_179171.1| acetyl-CoA carboxylase [Campylobacter jejuni RM1221]
 gi|86153141|ref|ZP_01071346.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|88596421|ref|ZP_01099658.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|121613650|ref|YP_001000716.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni 81-176]
 gi|157415294|ref|YP_001482550.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 81116]
 gi|167005637|ref|ZP_02271395.1| pyruvate carboxylase subunit A [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|218562653|ref|YP_002344432.1| acetyl-CoA carboxylase subunit A [Campylobacter jejuni subsp.
           jejuni NCTC 11168]
 gi|283956433|ref|ZP_06373913.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|57166727|gb|AAW35506.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           RM1221]
 gi|85844026|gb|EAQ61236.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni HB93-13]
 gi|87249292|gb|EAQ72253.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 81-176]
 gi|88191262|gb|EAQ95234.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 84-25]
 gi|112360359|emb|CAL35155.1| pyruvate carboxylase A subunit [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|157386258|gb|ABV52573.1| pyruvate carboxylase subunit A [Campylobacter jejuni subsp. jejuni
           81116]
 gi|283792153|gb|EFC30942.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 1336]
 gi|307747937|gb|ADN91207.1| Acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni M1]
 gi|315058480|gb|ADT72809.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni S3]
 gi|315927956|gb|EFV07278.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni DFVF1099]
 gi|315930370|gb|EFV09447.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 305]
 gi|315932168|gb|EFV11111.1| Acetyl-CoA carboxylase [Campylobacter jejuni subsp. jejuni 327]
          Length = 481

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVAR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|332289528|ref|YP_004420380.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gallibacterium
           anatis UMN179]
 gi|330432424|gb|AEC17483.1| acetyl-CoA carboxylase biotin carboxylase subunit [Gallibacterium
           anatis UMN179]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V++++ ++   +  + +           Y++       
Sbjct: 149 AKRIGYPIIIKASGGGGGRGMRVVRQESALEEAIAMTKAEAKAAFNNDMVYMEKYLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIG 239
            +    L  T             ++          PA    +  +  +      A + IG
Sbjct: 209 HIEIQVLADTHGNAIYLAERDCSMQRRHQKVVEEAPAPGITEEMRRHIGERCANACKEIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|302829048|ref|XP_002946091.1| pyruvate carboxylase [Volvox carteri f. nagariensis]
 gi|300268906|gb|EFJ53086.1| pyruvate carboxylase [Volvox carteri f. nagariensis]
          Length = 1283

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/239 (15%), Positives = 80/239 (33%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D ++  V    + D      +G   E+ +         I +            DK  
Sbjct: 151 LDMD-TIIRVAKEAEVDAIHPG-YGFLSENAVFARKCADAGIVFIGPKPETIEAMGDKTA 208

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++    CGV V P      F+ D           P ++K   GG   G+ V++ +  + 
Sbjct: 209 ARRAALECGVSVVPGTNQPLFSPDEAKEFATKYGYPVILKAAMGGGGRGMRVVRHESEMS 268

Query: 152 LDLLQSSSWNH-----GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +++S+        G   + +   +   +   ++ D   +V  +            K 
Sbjct: 269 DAFIRASNEARSAFGDGRMFVEKYVEEPRHIEIQILADHYGNVVHLYERDCSVQRRHQKV 328

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +     LP        + +   A    + +G R     +F+ D      ++LE+N +
Sbjct: 329 VEIAPAPKLPN----KTRRALYDDAVKLARHVGYRNAGTVEFMVD-KDGNHYFLEVNPR 382


>gi|239759398|gb|ACS14663.1| biotin carboxylase [Camellia oleifera]
          Length = 533

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 76/216 (35%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  + +DK  +++ + + GVP  P     +   
Sbjct: 147 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMVDKATARETMKNAGVPTVPGSEGLLQNT 206

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +     I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 207 EEAVRLSEEIGFPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 266

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 267 YIQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 322

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 323 AAVAAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 357


>gi|225387389|ref|ZP_03757153.1| hypothetical protein CLOSTASPAR_01142 [Clostridium asparagiforme
           DSM 15981]
 gi|225046521|gb|EEG56767.1| hypothetical protein CLOSTASPAR_01142 [Clostridium asparagiforme
           DSM 15981]
          Length = 450

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVL-----H---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   +   A   L     H   G   E+     +     I +    
Sbjct: 47  EAICIGPAPSGQSYLNMERILAATVALKADAIHPGFGFLSENAKFAKLCAECNIAFIGPS 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   +K  +++ +   GVPV P     +      ++    I  P +IK   GG   
Sbjct: 107 AEIINRMGNKSEARRTMMDAGVPVVPGSKEPVHQAAEALEMAKSIGFPVMIKASSGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ + + +     +   +   +         Y++        +    +      V     
Sbjct: 167 GMRISRGEADFTENFNAAQMESVKGFSDDTMYIEKYIEKPRHIEFQIMADKHGNVVHLGE 226

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P   I  D+ + +   A  A +A+G       +FL D  ++  +
Sbjct: 227 RDCSIQRRHQKVLEEAPCDVITQDLRERMGDTAVRAAKAVGYENAGTIEFLLD-KNKDFY 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FMEMNTR 292


>gi|146319453|ref|YP_001199165.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 05ZYH33]
 gi|146321650|ref|YP_001201361.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis 98HAH33]
 gi|253752468|ref|YP_003025609.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis SC84]
 gi|253754294|ref|YP_003027435.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis P1/7]
 gi|253756228|ref|YP_003029368.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis BM407]
 gi|145690259|gb|ABP90765.1| Biotin carboxylase [Streptococcus suis 05ZYH33]
 gi|145692456|gb|ABP92961.1| Biotin carboxylase [Streptococcus suis 98HAH33]
 gi|251816757|emb|CAZ52400.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis SC84]
 gi|251818692|emb|CAZ56528.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis BM407]
 gi|251820540|emb|CAR47296.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           suis P1/7]
 gi|292559074|gb|ADE32075.1| Acetyl-CoA carboxylase, biotin carboxylase [Streptococcus suis GZ1]
 gi|319758874|gb|ADV70816.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           suis JS14]
          Length = 457

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 51/150 (34%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG   GI  ++K + +            +++++G   +        
Sbjct: 148 AEKIGYPVMLKASAGGGGKGIRKVEKAEDLVPAFESASSEAKAAFDNGAMYIERVVYPAR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D    V  +            K      +  +   +   I +     A  A 
Sbjct: 208 HIEVQILADQHGHVIHLGERDCSLQRNNQKVLEEAPSIAIGQTMRERIGQ----AAVRAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           Q++G       +FL D    + +++E+N +
Sbjct: 264 QSVGYENAGTIEFLLDEAKGEFYFMEMNTR 293


>gi|154174589|ref|YP_001407396.1| acetyl-CoA carboxylase subunit A [Campylobacter curvus 525.92]
 gi|112802332|gb|EAT99676.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Campylobacter curvus 525.92]
          Length = 479

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 81/236 (34%), Gaps = 16/236 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++  +      D      +G   E+     ++E   + +            DK  ++ +
Sbjct: 63  KAIVKLAKECGADAIHPG-YGFLSENYEFAKMVEDAGLIFIGPKADVIRKMGDKNIARYL 121

Query: 100 VSSCGVPVCPSILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +   G+P+ P                   I  P ++K   GG   GI  + +++ +    
Sbjct: 122 MKKNGIPIVPGTEKLNDDSMDTIKEHARRIGYPVILKASGGGGGRGIREVWQEEDMENAF 181

Query: 155 LQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSL 209
              +      +N+ +  + +  V+   +   ++GD   ++  +            +    
Sbjct: 182 NSCTREAKAYFNNDEVFMEKLVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----RRHQK 237

Query: 210 NSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    I  ++ K +   A  A +A+G   +   +FL D  +   +++E+N +
Sbjct: 238 IIEIAPCPSISENLRKVMGMTAVAAAKAVGYSNVGTIEFLLDDYNN-FYFMEMNTR 292


>gi|218526262|gb|ACK86538.1| carbamoyl-phosphate synthase [Sialis californica]
          Length = 728

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 132 SGSQAIKALKEENIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIKSERPGGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   + + E        + IL+   + D+    + ++     V    +
Sbjct: 192 TFGGQTALNCGIELEQENVFEKYNCKILGTPILSIIETEDRKIFAERINEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 252 VYSVEEALKAAEMLGYPVMARAAFSLGGLGSGFANTKEELVN--LAHQALAHSSQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSDREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S   + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AIKVIKHFGVVGECNIQYALNPNSEDYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|194245482|gb|ACF35350.1| carbamoylphosphate synthetase [Tenomerga cinerea]
          Length = 857

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +       I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALREENILTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIKAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +  +  + +   +    + I +   + D+   ++ VSS    V    +
Sbjct: 131 TFGGQTGLNCGVELQLSGVFDKYNVKVLGTPIQSIIDTEDRKIFREQVSSIGEKVAPSSA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   R  +D+   +  P + +       LG       + +     Q+    H  QL+I++
Sbjct: 191 VYSVREALDAAEQLGYPVMARAAFSLGGLGSGFADNKEELRSIAQQAL--AHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKG-XXXVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLTNKEYNMLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AINVIRHFGIVGECNIQYAVNPNSDEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|196002371|ref|XP_002111053.1| hypothetical protein TRIADDRAFT_22916 [Trichoplax adhaerens]
 gi|190587004|gb|EDV27057.1| hypothetical protein TRIADDRAFT_22916 [Trichoplax adhaerens]
          Length = 2119

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/225 (13%), Positives = 71/225 (31%), Gaps = 14/225 (6%)

Query: 50  KPDLAF--NVLHGNFGEDGLVQAILELLEIPYTHSGI------LASALSMDKMRSKQVVS 101
           K D+AF     H  +     + + +                      +  D  + K    
Sbjct: 123 KNDIAFIGPPEHAMWALGDKIASSIVAQTAGVPTMPWSGSGTLKIDWVEEDVAKGKVAEV 182

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +  V     +      ++S + I  P +IK  +GG   GI  ++ ++  P    Q  S  
Sbjct: 183 TDEVYKKGCVTTVDEGVNSANKIGYPVMIKASEGGGGKGIRKVESEKDFPTLFRQVQSEV 242

Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G  + I +       L   ++ D       +            +           A   
Sbjct: 243 PGSPIFIMKLAKCARHLEVQILADQYGQAISLYGRDCSVQ----RRHQKIIEEAPAAIAL 298

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++++++++ A    + +        ++L+       ++LE+N +
Sbjct: 299 PEVFRQMEKAAVTLARMVRYVSAGTVEYLYTEEDG-FYFLELNPR 342


>gi|21674410|ref|NP_662475.1| carbamoyl-phosphate synthase, large subunit [Chlorobium tepidum
           TLS]
 gi|21647592|gb|AAM72817.1| carbamoyl-phosphate synthase, large subunit [Chlorobium tepidum
           TLS]
          Length = 618

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 92/295 (31%), Gaps = 32/295 (10%)

Query: 20  KACASALEDAGFKVSQI-----------DVD----------RSVGLVLAHLKPDLAFNVL 58
           +A   AL ++G++   +           D+             V  ++ H +P       
Sbjct: 118 QAVF-ALRESGYETIMVNCNPETVSTDYDIADKLYFEPLTFEDVIRIIEHEQPLGVIVSF 176

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T S  +  A    +  +         P   +        
Sbjct: 177 GGQTPLKLSTKLDKAGVHILGTSSDGIDLAEDRKRFGALLEKLDIPHPEYGTATTFAEAQ 236

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +  + I  P +++P        + +I  D S+   + Q+        LLI+++++     
Sbjct: 237 EITNRIGYPVLVRPSYVLGGRAMKIIYNDDSLKEYVDQALFITEKYPLLIDRFLE---TA 293

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
                DA  D T+  +     +       S +ST +LP           ++       + 
Sbjct: 294 VEFDIDALADSTDCVISGIMQHVEAAGIHSGDSTSILPYYNIDPAAIATMKEYTRKLAEH 353

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           IG  G+    +     + KV+ +E+N +   T     P +         ++   +
Sbjct: 354 IGVIGLMNVQYAV--QNGKVYVIEVNPRASRT----VPFVGKATAIPVVKIATRI 402


>gi|127514293|ref|YP_001095490.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella loihica
           PV-4]
 gi|126639588|gb|ABO25231.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella loihica
           PV-4]
          Length = 450

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V++ +  +   +  +       + +G   L +      
Sbjct: 151 AAQIGYPLIIKATAGGGGKGMRVVEDEAQLLGAIALTRQEAEAAFGNGGVYLEKYLTRPR 210

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             +  +  +++      A 
Sbjct: 211 HIEVQVLCDHQGHCISLGERDCSLQ----RAQQKVIESAPAPGLTPEQRQQISESCIRAC 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           QAIG RG    +FL+     + +++E+N +
Sbjct: 267 QAIGYRGAGTLEFLY--QDGEFYFMEMNTR 294


>gi|325854373|ref|ZP_08171572.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           CRIS 18C-A]
 gi|325484167|gb|EGC87101.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           CRIS 18C-A]
          Length = 393

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 21/203 (10%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--Q 165
                      ++   I  P V+KPL   S  G   +  D  +      +     GD  +
Sbjct: 121 YFYAKTYEEFKEAADEIGFPCVVKPLMSSSGHGQSYVHNDDELQEAFKNAMEGARGDVKE 180

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++IE+++D       +        T    P         +          P  I  +  +
Sbjct: 181 VIIEEFIDFDSEFTLLTVTQKNGPTLFCPPIGHV-----QKGGDYRESWQPYTISDEALQ 235

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM------TPVSIFPE 276
           + + +A    +A+   GI   +F     S +V + E++ +P   GM      T  S F  
Sbjct: 236 QAEHMADEVTRALTGYGIWGVEFFLT-KSGEVIFSELSPRPHDTGMVTLAHTTNFSEFEL 294

Query: 277 MAAY-AGYSFRELLLWMVEDASC 298
                 G     +    +E A C
Sbjct: 295 HFRAVMGLPIPAI---HLEHAGC 314


>gi|229592403|ref|YP_002874522.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens SBW25]
 gi|259547258|sp|C3K1H6|PURT_PSEFS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|229364269|emb|CAY51988.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens SBW25]
          Length = 393

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGAALRAVIEAEKPHFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELEAEGFTVIPTARATSLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYS 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++    +        +   G        ++G    
Sbjct: 143 KAVQDLGFPCVVKPVMSSSGKGQSLLRSTDDVQKA--WDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  I            +          P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPIALAESERVAKAVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFI--KGDQVWFSEVSPRP 284


>gi|157692933|ref|YP_001487395.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus pumilus
           SAFR-032]
 gi|157681691|gb|ABV62835.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacillus
           pumilus SAFR-032]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +      +      Y++       
Sbjct: 148 AASIGYPVIIKATAGGGGKGIRVARNEEELINGVTITQQEAAQNFGNPGVYLEKFIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+     DI +++   A  A +A+ 
Sbjct: 208 HVEIQVLADQHGHTIHLGERDCSIQRRMQKLLEETPSPALNADIREQMGEAAVKAAEAVE 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D    K +++E+N +
Sbjct: 268 YTGAGTVEFIYDYNEEKFYFMEMNTR 293


>gi|86151145|ref|ZP_01069361.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
 gi|85842315|gb|EAQ59561.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. jejuni 260.94]
          Length = 481

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVAR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|325969057|ref|YP_004245249.1| carbamoyl-phosphate synthase, large subunit [Vulcanisaeta
           moutnovskia 768-28]
 gi|323708260|gb|ADY01747.1| carbamoyl-phosphate synthase, large subunit [Vulcanisaeta
           moutnovskia 768-28]
          Length = 1038

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/312 (13%), Positives = 92/312 (29%), Gaps = 41/312 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLA-- 54
           SG     A  + G     ++ +                       +  ++   +PD    
Sbjct: 25  SGIQALKAYREEGLTTVLVNPNIATVQTTRIFADRVYLAPIRPEFLVKIIERERPDGIAC 84

Query: 55  -F---NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            F     L      + +       +++  T    + SALS +  +         V    +
Sbjct: 85  GFGGQTALSACVNLNEIGVFKKYGVKVLGTPIEGIRSALSRELFKELMSRHGISVLPSIT 144

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+ + +  P + +        G  V      +     ++ + +   ++LIE+
Sbjct: 145 TYSPNEALDAANKLGYPVLARVSFNLGGAGAFVAYNSNELASKYHKALAQSEIKEVLIEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y+ G +     +   S   +   V   +     +              +  D Y+  + L
Sbjct: 205 YIGGWKEIEFEVMRDSHGNSVAVVCMENIDPMGIHTGDSAVVAPC-LTLTNDEYQRARLL 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM-------TPVSIFPEMAAYA-- 281
           +     AI   G        +P   +++ +E N  P M       +  S +P     A  
Sbjct: 264 SIGVANAINLIGECNVQVAINPAGPEMYVIETN--PRMSRSSALASKASGYPLAYIAAKL 321

Query: 282 --GYSFRELLLW 291
             GY   EL+  
Sbjct: 322 TLGYRLDELINK 333


>gi|332163154|ref|YP_004299731.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|318603962|emb|CBY25460.1| biotin carboxylase of acetyl-CoA carboxylase [Yersinia
           enterocolitica subsp. palearctica Y11]
 gi|325667384|gb|ADZ44028.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|330862845|emb|CBX72986.1| biotin carboxylase [Yersinia enterocolitica W22703]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLDDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317048502|ref|YP_004116150.1| phosphoribosylglycinamide formyltransferase 2 [Pantoea sp. At-9b]
 gi|316950119|gb|ADU69594.1| phosphoribosylglycinamide formyltransferase 2 [Pantoea sp. At-9b]
          Length = 392

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++A  KPD     +
Sbjct: 24  GKEVALECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALAALIALEKPDFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         +P   +  L       +  + + ++                +
Sbjct: 84  EAIATEKLLELEQQGQKVVPTARAARLTMNREGIRRLAAEELALPT-STYQFADSKENFV 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 AAATAIGFPCIVKPVMSSSGKGQSFIRDASQLDKA--WDYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMSELALQRAQEIAEKVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|282910690|ref|ZP_06318493.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus WBG10049]
 gi|282325295|gb|EFB55604.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus WBG10049]
          Length = 1150

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V      D      +G   E+           I +    +    +  DK++++  
Sbjct: 67  ERIIDVAKQANVDAIHPG-YGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTT 125

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
                +PV P       + +     +     P +IK   GG   G+ +++++  +     
Sbjct: 126 AIKADLPVIPGTDGPIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFH 185

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S         E Y++        +    +      +         ++        V 
Sbjct: 186 RAKSEAEKSFGNSEVYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVA 245

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+      + + +   A      I        +FL      + F++E+N +
Sbjct: 246 PSVGLSSTLRQRICDAAIQLMINIKYVNAGTVEFLV--SGDEFFFIEVNPR 294


>gi|224087339|ref|XP_002308127.1| predicted protein [Populus trichocarpa]
 gi|290463112|sp|B9HBA8|ACCC1_POPTR RecName: Full=Biotin carboxylase 1, chloroplastic; AltName:
           Full=Acetyl-CoA carboxylase subunit A 1; Short=ACC;
           Flags: Precursor
 gi|222854103|gb|EEE91650.1| predicted protein [Populus trichocarpa]
          Length = 528

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+ +   +     I +      +  +  DK  +++ +   GVP  P     +   
Sbjct: 145 YGFLAENAVFVEMCREHGINFIGPNPDSIRVMGDKSTARETMKKAGVPTVPGSDGLLQST 204

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +   + I  P +IK   GG   G+ + K+       L Q+ S     + +    L +
Sbjct: 205 EEGVRLANEIGYPVMIKATAGGGGRGMRLAKEPDEFVKLLQQAKSEAAAAFGNDGVYLEK 264

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +V               + +           +  ++ K +  
Sbjct: 265 YVQNPRHIEFQVLADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGD 320

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A  +IG  G+   +FL D      +++E+N +
Sbjct: 321 AAVSAAASIGYIGVGTVEFLLDER-GSFYFMEMNTR 355


>gi|163854880|ref|YP_001629178.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bordetella
           petrii DSM 12804]
 gi|163258608|emb|CAP40907.1| unnamed protein product [Bordetella petrii]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + ++   +  + S         E Y++       
Sbjct: 149 AREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNPEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I   + + +      A + +G
Sbjct: 209 HVEIQILADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIARRLIERIGDRCADACRKMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|116071816|ref|ZP_01469084.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           BL107]
 gi|116065439|gb|EAU71197.1| 5'-phosphoribosylglycinamide transformylase [Synechococcus sp.
           BL107]
          Length = 398

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/270 (13%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       S+  V+   +PD+    +
Sbjct: 23  GKEVAIAAQRLGCRVIACDRYANAPAMQVADTAEVFPMTDATSLKEVVQRHRPDVVIPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  IP   +          +  +   +                  
Sbjct: 83  EALAVEALAELEQDGITVIPTARATAFTMNRDQIRDLAAGELGLRT-ARFAYASNAEELK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++  + +      + +   G  +Q+++E++++   
Sbjct: 142 KVAAPLGWPVVVKPVMSSSGKGQSVVQTPEQLDQAWNAAMANARGTSNQVIVEEFLEFDL 201

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T    P                    PA++     ++ Q +A     
Sbjct: 202 EITLLTIRQRNGETLFCPPIGHEQE-----RGDYQCSWQPAQMTDAQLQQAQTMARTVTD 256

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +G  G+   +F       +V + E++ +P
Sbjct: 257 NLGGAGLFGVEFFLC--GNEVIFSELSPRP 284


>gi|330980528|gb|EGH78631.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 336

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P ++K   GG   G+ V++++  +   +  +           E Y++ 
Sbjct: 143 HSILQIARDIGYPVIVKAAGGGGGRGMRVVQEESQLLDAIALTREEARHAFGNPELYIEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFL 233
                  +    L                ++          PA  I   +   V      
Sbjct: 203 FLGQPRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGIDAALMARVGERCAQ 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +G +G+   +FLF     + +++E+N +
Sbjct: 263 ACRQMGYQGVGTFEFLF--EKDEFYFIEMNTR 292


>gi|282160085|gb|ADA79476.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis NE061598]
          Length = 378

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 39  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKAAKLTMD 98

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 99  RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 157

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 158 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 208

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +P     + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 209 IQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 266

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 267 PRPHDTGM 274


>gi|282880349|ref|ZP_06289061.1| carbamoyl-phosphate synthase, large subunit [Prevotella timonensis
           CRIS 5C-B1]
 gi|281305781|gb|EFA97829.1| carbamoyl-phosphate synthase, large subunit [Prevotella timonensis
           CRIS 5C-B1]
          Length = 1076

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G +   I+ +                       V  V+   +PD    
Sbjct: 28  SGSQALKALREEGIQTVLINPNIATVQTSDGVADKIYFLPVQPYFVERVIEKEQPDGILL 87

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G      G +   + ILE   +    + + A   + D+    + ++   V    S  
Sbjct: 88  SFGGQTALNCGVELYKKGILEKHHVRVLGTPVQAIIDTEDRELFVEKLNEIDVKTIKSEA 147

Query: 113 VNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +I+       LG      ++ +    L   ++    Q+L+E+
Sbjct: 148 CENIEQARHAAQTLGYPVIIRAAYALGGLGSGFCDNEEELNK--LAEKAFAFSPQVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y +++ L
Sbjct: 206 SLKGW-KEIEYEVVRDRYDNCITVCNMENFDPLGIHTGESIVIAPSQTLTNSEYHKLRAL 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +    + IG  G     + FDP S     +E+N +  ++  S     +   GY   
Sbjct: 265 SIKIIRHIGIIGECNVQYAFDPESEDYRVIEVNAR--LSRSS--ALASKATGYPLA 316


>gi|218526184|gb|ACK86499.1| carbamoyl-phosphate synthase [Ditaxis biseriata]
          Length = 726

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/310 (12%), Positives = 91/310 (29%), Gaps = 34/310 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +P     
Sbjct: 130 SGSQAIKALKEENIQTVLMNPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +        + I +   + D+      ++     V    +
Sbjct: 190 TFGGQTALNCGVELEKNGIFKKYGCKILGTPIESIIETEDRKMFADKINEIGEKVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG       + +    L S +  H +QL+I++
Sbjct: 250 VYSVHEALIAAKKIGYPVMARAAFSLGGLGSGFAYNAEQLTS--LASQALAHSNQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WMVEDASCLR 300
            +   AS L+
Sbjct: 423 KLALGASLLK 432


>gi|238764613|ref|ZP_04625559.1| Biotin carboxylase [Yersinia kristensenii ATCC 33638]
 gi|238697203|gb|EEP89974.1| Biotin carboxylase [Yersinia kristensenii ATCC 33638]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLDDDTAKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|153813434|ref|ZP_01966102.1| hypothetical protein RUMOBE_03854 [Ruminococcus obeum ATCC 29174]
 gi|149830455|gb|EDM85547.1| hypothetical protein RUMOBE_03854 [Ruminococcus obeum ATCC 29174]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +        A   +K  +K  +++ GVP+ P    
Sbjct: 77  AIHPGFGFLSENSRFAELCEQCNITFIGPPSTVIASLGNKQAAKNTMANAGVPIIPGGKN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      M     I  P +IK   GG   G+ V             +            
Sbjct: 137 PIYTVEEGMKEAETIGYPVIIKAALGGGGKGMRVADTPADFEESFRTAQKETQMAFGDST 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            YV+        +    +      V         ++ +        P + I  ++   + 
Sbjct: 197 MYVEHFVRHPRHIEFQIMADKFGNVIHLGERDCSIQRNHQKMIEESPCEVISDELRARMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL D    + +++E+N +
Sbjct: 257 EAAVKAAKAAGYENAGTIEFLLDKE-GRFYFMEMNTR 292


>gi|56708762|ref|YP_170658.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110671234|ref|YP_667791.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis FSC198]
 gi|224457973|ref|ZP_03666446.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis MA00-2987]
 gi|254371374|ref|ZP_04987375.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254875630|ref|ZP_05248340.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
 gi|81596995|sp|Q5NE84|PURT_FRATT RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|122970816|sp|Q14FN7|PURT_FRAT1 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|54112641|gb|AAV28954.1| NT02FT0368 [synthetic construct]
 gi|56605254|emb|CAG46400.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis SCHU S4]
 gi|110321567|emb|CAL09783.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. tularensis FSC198]
 gi|151569613|gb|EDN35267.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. tularensis FSC033]
 gi|254841629|gb|EET20065.1| phosphoribosylglycinamide formyltransferase [Francisella tularensis
           subsp. tularensis MA00-2987]
          Length = 386

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 77/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKAAKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +P     + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMPDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|311103845|ref|YP_003976698.1| biotin carboxylase 1 [Achromobacter xylosoxidans A8]
 gi|310758534|gb|ADP13983.1| biotin carboxylase 1 [Achromobacter xylosoxidans A8]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/152 (13%), Positives = 51/152 (33%), Gaps = 3/152 (1%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +  +     +  P +IK   GG   G+ V+  + ++   +  + S         E Y++ 
Sbjct: 143 QEIIRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNPEVYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +    L                ++          P   +   + + +      
Sbjct: 203 FLENPRHIEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGVARRLIERIGDRCAD 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +G RG    +FL+   + + +++E+N +
Sbjct: 263 ACRKMGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|288904560|ref|YP_003429781.1| acetyl-CoA carboxylase (biotin carboxylase subunit) [Streptococcus
           gallolyticus UCN34]
 gi|306830554|ref|ZP_07463721.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977532|ref|YP_004287248.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
 gi|288731285|emb|CBI12835.1| acetyl-CoA carboxylase (biotin carboxylase subunit) [Streptococcus
           gallolyticus UCN34]
 gi|304427272|gb|EFM30377.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177460|emb|CBZ47504.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           gallolyticus subsp. gallolyticus ATCC BAA-2069]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 91/281 (32%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G     +    D++ +  +LA            D   N              
Sbjct: 17  IIRAARELGINTVAVYSEADKNSLHTILADEAICIGPARSTDSYLNMNAVLSAAIVTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    +  P ++K   GG   GI  ++  + +      +S      + +G 
Sbjct: 137 EVFTAEEALEVADRLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  +V  +            K    + +  +       + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSHDNVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +A+        +FL D  + + +++E+N +
Sbjct: 253 AQIGDAAIRAAKAVHYENAGTIEFLLDEKTSEFYFMEMNTR 293


>gi|259418294|ref|ZP_05742212.1| biotin carboxylase [Silicibacter sp. TrichCH4B]
 gi|259345689|gb|EEW57533.1| biotin carboxylase [Silicibacter sp. TrichCH4B]
          Length = 435

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/170 (20%), Positives = 59/170 (34%), Gaps = 8/170 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V K  + +     Q+ +           YV+   L+  
Sbjct: 149 AEQIGFPVMIKAAAGGGGRGIRVAKTVEELKSLAPQAKAEAEAAFGDGGLYVERAILSPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E AV   +      +             +  +  + +   A    +A+  
Sbjct: 209 HIEVQILGDGETAVHCFERECSLQRRRQKVWEEAGATCLDEETREALCASAVALAKAVNY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPEMAAYAG 282
           RG    ++LFD  + + F++E+N       P    +T V +  EM    G
Sbjct: 269 RGAGTLEYLFDEAANEFFFIEMNTRIQVEHPVTEMLTGVDLVAEMIKVCG 318


>gi|209696240|ref|YP_002264170.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Aliivibrio
           salmonicida LFI1238]
 gi|208010193|emb|CAQ80520.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Aliivibrio
           salmonicida LFI1238]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN----------- 56
                 A ++ G K   +    DR +  VL   +          D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPARSSDSYLNIPRIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         +  DK+ +   +   GVP  P 
Sbjct: 74  GAVAVHPGYGFLAENADFAEQVERSGFIFVGPKAETIRMMGDKVSAISSMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   +         I  P +IK   GG   G+ V++ ++ +   +  + +      
Sbjct: 134 SDGPLDNDEAKNKSFAKRIGYPIIIKASSGGGGRGMRVVRAEKDLIEAIAMTRAEATACF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    +   +            ++          PA    +  +
Sbjct: 194 GDGTVYMEKFLENPRHIEVQIIADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 KYIGERCTRACVDIAYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|308188305|ref|YP_003932436.1| Biotin carboxylase [Pantoea vagans C9-1]
 gi|308058815|gb|ADO10987.1| Biotin carboxylase [Pantoea vagans C9-1]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 79/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL             +K  L    L       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAQSVKSYLNIPALISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAINAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGSLTDDMEKNRAFAKRIGYPVIIKASGGGGGRGMRVVRGDKDLEESINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          P     +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQRRHQKVVEEAPGPGITEEQR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RFIGNRCSQACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|289434638|ref|YP_003464510.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
 gi|289170882|emb|CBH27424.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria seeligeri
           serovar 1/2b str. SLCC3954]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 268 YSGAGTIEFIFDHHENNFYFMEMNTR 293


>gi|257459445|ref|ZP_05624554.1| biotin carboxylase [Campylobacter gracilis RM3268]
 gi|257442870|gb|EEV18004.1| biotin carboxylase [Campylobacter gracilis RM3268]
          Length = 477

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 87/264 (32%), Gaps = 30/264 (11%)

Query: 12  REVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAI 71
            EVS       A AL+  G+    +D  + +  V      D      +G   E+      
Sbjct: 49  YEVS-------ADALK--GY----LDAKK-IVEVAKECGADAIHPG-YGFLSENFDFARE 93

Query: 72  LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISP 126
           +E   I +            +K  ++ ++   G+P+ P                   I  
Sbjct: 94  VEDAGIIFIGPKPDVIRKMGNKNIARYLMRKNGIPIVPGTEKLNHESMDTIKKYAREIGY 153

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGV 181
           P ++K   GG   GI  + +++ +       +      +N+ +  + +  V    +   +
Sbjct: 154 PVILKASGGGGGRGIREVWEEKDMESAYDSCTREAKTFFNNDEIFMEKLVVKPRHIEFQI 213

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +GD   ++  +            +             I   + K +   A  A +A+   
Sbjct: 214 IGDNYGNIIHLCERDCSIQ----RRHQKIIEIAPCPSISEHLRKTMGTTAVAAAKAVNYT 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
            +   +FL D  +   +++E+N +
Sbjct: 270 NVGTVEFLLDDYNN-FYFMEMNTR 292


>gi|77457241|ref|YP_346746.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens Pf0-1]
 gi|123605847|sp|Q3KHJ9|PURT_PSEPF RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|77381244|gb|ABA72757.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Pseudomonas fluorescens Pf0-1]
          Length = 393

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGAALRAVIEAEKPHFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +                  
Sbjct: 84  EAIATATLVALEAEGFTVIPTARAAQLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYS 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++    +        +   G        ++G    
Sbjct: 143 KAVQDLGFPCVVKPVMSSSGKGQSLLRSADDVQKA--WDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHVGGTTFCAPVGHRQEKGDYQESWQPQAMSPVALAESERVAKAVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFI--KGDQVWFSEVSPRP 284


>gi|320040249|gb|EFW22182.1| carbamoyl-phosphate synthase [Coccidioides posadasii str. Silveira]
          Length = 1174

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   KPD  F 
Sbjct: 118 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEKEKPDGIFL 177

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D            +    +
Sbjct: 178 SFGGQTALNLGVQMNRMGIFEKYGVKVLGTSIKTLETSEDRDLFAKALNEIDIPIAESIA 237

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 238 VSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELKN--LSSRSLTLAPQILVEK 295

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 296 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 354

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 355 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 406


>gi|303321562|ref|XP_003070775.1| carbamoyl-phosphate synthase arginine-specific large chain,
           putative [Coccidioides posadasii C735 delta SOWgp]
 gi|240110472|gb|EER28630.1| carbamoyl-phosphate synthase arginine-specific large chain,
           putative [Coccidioides posadasii C735 delta SOWgp]
          Length = 1174

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   KPD  F 
Sbjct: 118 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEKEKPDGIFL 177

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D            +    +
Sbjct: 178 SFGGQTALNLGVQMNRMGIFEKYGVKVLGTSIKTLETSEDRDLFAKALNEIDIPIAESIA 237

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 238 VSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELKN--LSSRSLTLAPQILVEK 295

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 296 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 354

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 355 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 406


>gi|33772578|gb|AAQ54688.1| carbamoylphosphate synthetase [Stenomphrale teutankhameni]
          Length = 514

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P+    
Sbjct: 155 SGSQAIKALREDKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 214

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     I     +    + I +   + D+     +       V    +
Sbjct: 215 TFGGQTALNCGVELEKAGIFSKFNVKILGTPIKSIIETEDRKLFSERISEIGEKVAPSEA 274

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 275 VYSVKEALEAAERLGYPVMARAAFSLGGLGSGFANNQEEL--KILAQQALAHSNQLIIDK 332

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 333 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 391

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    Q  G  G     +  +P S   + +E+N +  ++  S     +   GY    +  
Sbjct: 392 AIKVIQHFGVIGECNIQYALNPFSEGYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 447

Query: 291 WM 292
            +
Sbjct: 448 KL 449


>gi|47093744|ref|ZP_00231494.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 4b H7858]
 gi|47017865|gb|EAL08648.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           str. 4b H7858]
          Length = 342

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 36  AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 95

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 96  HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 155

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 156 YSGAGTIEFIFDHHENNFYFMEMNTR 181


>gi|297529434|ref|YP_003670709.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. C56-T3]
 gi|297252686|gb|ADI26132.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp. C56-T3]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +  +   +  +             Y++       
Sbjct: 148 AEEIGYPVIIKATAGGGGKGIRVARDEGELVKSINITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +             ++          P+    D  +      A  A +A+ 
Sbjct: 208 HVEIQVLADSYGNTIHLGERDCSIQRRLQKLVEEAPSPALDDEMRRKMGEAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D  +++ +++E+N +
Sbjct: 268 YTGAGTVEFIYDHRNKQFYFMEMNTR 293


>gi|218526254|gb|ACK86534.1| carbamoyl-phosphate synthase [Psychopsis margarita]
          Length = 718

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 126 SGSQAIKALREENVQTVLINPNIATVQTSRGLADKVYFLPLIPEYVEQVIRSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + ++     V    +
Sbjct: 186 TFGGQTALNCGVELEKANVFAKYGCKILGTPIQSIIETEDRKIFAEKINEIGEKVAPSAA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 246 VYSVQEALEAAEKIGYPVMARAAFSLGGLGSGFAYNKEQLKS--LAMQALAHSNQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|242797346|ref|XP_002482993.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
 gi|218719581|gb|EED19001.1| conserved hypothetical protein [Talaromyces stipitatus ATCC 10500]
          Length = 389

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/197 (14%), Positives = 59/197 (29%), Gaps = 23/197 (11%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD---------LLQSSSWNHGDQLLIE 169
               +   P V KP++G  S G+ +    + +            L+    +  G++  I 
Sbjct: 184 CISSITKLPVVGKPVRGRGSHGVKLCHNPEELREHVLSLLQESPLVMIEEYLAGEEATIT 243

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                   +  +    SL              Y    +   ++ V+      D+      
Sbjct: 244 VMPP----SSEMPDYWSLPPVTRFNHADGVAPYNGAVAVSANSRVVTESELRDLAYGKVI 299

Query: 230 LAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAA 279
                  + I      R D        +    +IN++P MT           S+    A+
Sbjct: 300 NECVQVARLIRATAPIRIDARRFSEGSEFALFDINMKPNMTGPGRPGREDQASLTAIAAS 359

Query: 280 YAGYSFRELLLWMVEDA 296
             G+ +  LL+ ++  A
Sbjct: 360 ALGWDYGSLLMKILATA 376


>gi|226946002|ref|YP_002801075.1| phosphoribosylglycinamide formyltransferase 2 [Azotobacter
           vinelandii DJ]
 gi|259547215|sp|C1DDZ2|PURT_AZOVD RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|226720929|gb|ACO80100.1| Phosphoribosylglycinamide formyltransferase [Azotobacter vinelandii
           DJ]
          Length = 393

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 79/285 (27%), Gaps = 35/285 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------VDRS---------- 41
            +L G  S E    L  GK     L+  G +V  +D            RS          
Sbjct: 15  VLLCG--SGE----L--GKEVVIELQRFGVEVIAVDRYADAPAMQVAHRSHVINMLDGAA 66

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  ++   +P      +        +         IP   +  L       +  + + + 
Sbjct: 67  LRALIEQERPHYIVPEIEAIATATLVELESEGFTVIPSARAANLTMNREGIRRLAAEELG 126

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   +  P V+KP+   S  G  ++K  + +        +  
Sbjct: 127 LPT-SPYRFADSFEEYRAAAEALGFPCVVKPIMSSSGKGQSLLKGPEQLQAA--WDYAQE 183

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G        V+G            L V               +          P  +  
Sbjct: 184 GGRAGKGRVIVEG--FIDFDYEITLLTVRHAGETTFCAPIGHRQEKGDYQESWQPQAMST 241

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               E +R+A    +A+G RG+   +        +V++ E++ +P
Sbjct: 242 TAQAESERIARTVTEALGGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|332795745|ref|YP_004457245.1| phosphoribosylaminoimidazole carboxylase [Acidianus hospitalis W1]
 gi|332693480|gb|AEE92947.1| Phosphoribosylaminoimidazole carboxylase [Acidianus hospitalis W1]
          Length = 395

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 82/281 (29%), Gaps = 25/281 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++    PD     +
Sbjct: 23  GKEIAIEAQRMGIEVVAVDRYDMAPAMHVAHRKYVIDMMDPSALKSIVKRENPDGIITEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         IP   +  +       +  + + +                  
Sbjct: 83  EAINTDALIDLEDSGYKIIPNAQAVKICMNRIELRRLAAEKLKVPT-TTYAFAESAEEVR 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP    S  G ++I K+  I     +S S   G    +         T
Sbjct: 142 KACRDIGFPCLIKPEMSSSGHGHVLINKEDEIEDAYKESISHARGKSKRVIVEEYVKIDT 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +     +     V K+       + S        PA +  D+ ++ +  A    + +
Sbjct: 202 ELTILTYRYNTGNGIVTKTFPPVEHQRPSYYYVESWQPATVQDDVVEKAKSYAIKVVEEL 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           G  GI   + +      +V + E++ +P      +    + 
Sbjct: 262 GGVGIFGVEII--KSGNRVLFSEVSPRP--HDTGMVTMASQ 298


>gi|254883766|ref|ZP_05256476.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_3_47FAA]
 gi|254836559|gb|EET16868.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           4_3_47FAA]
          Length = 389

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A       F+V   +D D ++  V+A  KPD+    +     E         +  +
Sbjct: 39  AMQVADE-----FEVFSMLDGD-ALDAVVAKHKPDIIVPEIEAIRTERLYHLEQEGIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P V+KPL   S
Sbjct: 93  PSARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSLEELQEAAKEIGFPCVVKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  ++K    +          + GD   +        +             +      
Sbjct: 152 GKGQSLVKSVDELEQAWHYGCEGSRGDIKELIIEE---FIQFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +  KE QR+A     A+   GI   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|146415594|ref|XP_001483767.1| hypothetical protein PGUG_04496 [Meyerozyma guilliermondii ATCC
           6260]
          Length = 964

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 50/142 (35%), Gaps = 6/142 (4%)

Query: 129 VIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMG 183
           ++K   GG  +G+ V  ++  +     +  S     +N+    L +    G  +   V G
Sbjct: 1   MLKSTAGGGGMGLKVCYREDELSDAFKEVVSRGETLFNNSGAFLEKYVECGRHIEVQVFG 60

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           +    V      +        K      +  +     L + K++   A     ++  +  
Sbjct: 61  NGQGYVRAFGERECSIQRRHQKVIEEAPSPFVENGRTL-LRKQLVTCAAHLAASVKYKSA 119

Query: 244 SRSDFLFDPLSRKVFWLEINVQ 265
              +FL D  +   ++LE+N +
Sbjct: 120 GTVEFLVDDETGSFYFLEMNTR 141


>gi|90020458|ref|YP_526285.1| UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
           6-diaminopimelate-D-alanyl-D-alanyl ligase
           [Saccharophagus degradans 2-40]
 gi|89950058|gb|ABD80073.1| acetyl-CoA carboxylase, biotin carboxylase [Saccharophagus
           degradans 2-40]
          Length = 446

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 68/217 (31%), Gaps = 16/217 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-----LV 113
           +G   E+      ++     +         +  DK+ + + +   GVP  P         
Sbjct: 82  YGFLAENADFAEQVQKSGFTFIGPDPDVIRMMGDKVCAIEAMKKAGVPTVPGSGGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
               +   + I  P +IK   GG   G+ V+  + ++   +  + +     +      + 
Sbjct: 142 REECIRIGNRIGFPVIIKAAAGGGGRGMRVVHTESALWNSIQLTKAEAGAAFGDDTVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   VM D   +                K         +   I  ++Y    
Sbjct: 202 KYLQNPRHVEVQVMSDGQGNAVHFFDRDCSLQRRHQKVLEEAPAPGIDMAIREEVYAACV 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        IG RG    +FL+       +++E+N +
Sbjct: 262 KACIE----IGYRGAGTFEFLY--EDGNFYFIEMNTR 292


>gi|18312299|ref|NP_558966.1| carbamoyl phosphate synthase large subunit [Pyrobaculum aerophilum
           str. IM2]
 gi|22095515|sp|Q8ZY48|CARB_PYRAE RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|18159745|gb|AAL63148.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum aerophilum
           str. IM2]
          Length = 1024

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLA-- 54
           SG     A  + G K   ++ +                     + +  V+   +PD    
Sbjct: 25  SGSQALKAFREEGIKTVLVNPNIATIQTSKFLADRVYFIPIQRQFLAEVIEQERPDAIAC 84

Query: 55  -F---NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            F     L      D         + +  T    +  ALS D  +     +   VP    
Sbjct: 85  GFGGQTALSACVDLDEAGVLEKYGVRVVGTPVRGIKRALSRDLFQKAMREAGIPVPPSSP 144

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++        G  V + ++++   + ++ + +   ++L+E+
Sbjct: 145 AKSPEEAIEIARYLGYPVVVRVSFNLGGAGAFVARSEEALKARIYKAFAQSAIGEVLVEK 204

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G +     +   + D     V   +     +              +  + Y+  + +
Sbjct: 205 YLEGWKEIEFEVVRDAYDNVAAVVCMENIDPMGVHTGDSIVVAPC-LTLTDEEYQTARNI 263

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    + I   G        +    + + +E N  P M+  S     +  +GY    +  
Sbjct: 264 SIGVVRTIELIGEGNVQVAINYAGPEQYAIETN--PRMSRSS--ALASKASGYPLAYIAA 319

Query: 291 WM 292
            +
Sbjct: 320 KL 321


>gi|333000151|gb|EGK19734.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-218]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSTDRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + + +    A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGKRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|158424699|ref|YP_001525991.1| acetyl-CoA carboxylase [Azorhizobium caulinodans ORS 571]
 gi|158331588|dbj|BAF89073.1| acetyl-CoA carboxylase [Azorhizobium caulinodans ORS 571]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 25/256 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL   ++ +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLAENARFAEILADHKVHFIGPKPEHIRIMGDKIEAKKTAQKLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I  +         I  P ++K   GG   G+ V      +   L  + +        
Sbjct: 135 DGGINSDEEAHRVAAEIGFPVLVKAAAGGGGRGMKVAMTADDLSQALSTARTEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++   +T   +    L   +            L+          P+        +E
Sbjct: 195 DAVYLEKYLVTPRHIEIQVLGDGKGNAVHLGERDCSLQRRHQKVWEEAPSPALEAAQRQE 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
           +      A + +   G+   +FL+   + + +++E+N       P +T            
Sbjct: 255 IGETVAKAMRELKYLGVGTVEFLY--ENGRFYFIEMNTRIQVEHP-VTE--------EIT 303

Query: 282 GYSFRELLLWMVEDAS 297
           G    +L+   +  A+
Sbjct: 304 GI---DLINEQIRVAA 316


>gi|145250613|ref|XP_001396820.1| pyruvate carboxylase [Aspergillus niger CBS 513.88]
 gi|134082342|emb|CAK42357.1| unnamed protein product [Aspergillus niger]
          Length = 650

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 47/143 (32%), Gaps = 3/143 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            +  P ++K + GG   GI ++  D+ +   +  + + +    + +E+          V 
Sbjct: 154 QVQYPVMVKAVDGGGGRGIRLVYGDEGLEGAVRGAVNESPSGMVFVEKAAVKGFRHVEVQ 213

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                        +        +                 + + V   A    +A   R 
Sbjct: 214 IIGDGVEVRHLWERDCSVQ---RRFQKVVEMAPSLIGDRGLVQRVVDAAVRMGRATRYRS 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
           +   +FL +  S + ++LEIN +
Sbjct: 271 LGTVEFLVNEGSGEFYFLEINPR 293


>gi|119475591|ref|ZP_01615944.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
 gi|119451794|gb|EAW33027.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2143]
          Length = 669

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/237 (15%), Positives = 72/237 (30%), Gaps = 15/237 (6%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  ++    A    D      +G   E+           I +      A  L  +K  +K
Sbjct: 62  VIDNILDAAAKTGADAIHPG-YGFLSENAEFAKACTDAGIIFIGPSPEAIDLMGNKRIAK 120

Query: 98  QVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             +   GVP  P       +     +    I  P ++K   GG   G+        +   
Sbjct: 121 NRMIDAGVPCIPGYQGADQSNAVLLEKAQSIGYPLMVKAAAGGGGRGMRFQMSADGLEDA 180

Query: 154 LLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
           +  + +     +   + +L    ++G  +   V  DAS     +            +   
Sbjct: 181 IKSARTEALNAFGSDELILERAVINGRHIEIQVAADASGQAVYLGERDCSIQ----RRHQ 236

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     +   +   + + A  A  A   +G+   +FL D      F+LE+N +
Sbjct: 237 KVIEEAPSPFVDEKLRHLMGQAAVNAASACHYQGVGTVEFLVDA-DGSFFFLEMNTR 292


>gi|332286766|ref|YP_004418677.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pusillimonas sp.
           T7-7]
 gi|330430719|gb|AEC22053.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pusillimonas sp.
           T7-7]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 33/213 (15%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +      +  +  DK+ +KQ +   GVPV P         
Sbjct: 82  YGFLAENADFAERVEKSGFVFIGPRPESIRIMGDKVCAKQAMIEAGVPVVPGSEGALPED 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     +  P +IK   GG   G+ V+  + ++   +  + +         E Y++
Sbjct: 142 PDEIFRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALQNAVAMTRNEAGAAFNNPEVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAF 232
                   +    L                ++          PA  I   + + +     
Sbjct: 202 KFLENPRHIEIQILADGVRNAIWLGERDCSMQRRHQKVIEEAPAPGIARRLIERIGERCA 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + +  RG    +FL+   + + F++E+N +
Sbjct: 262 DACRKMNYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|311747297|ref|ZP_07721082.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
 gi|126579011|gb|EAZ83175.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Algoriphagus
           sp. PR1]
          Length = 497

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/287 (12%), Positives = 82/287 (28%), Gaps = 40/287 (13%)

Query: 13  EVSLSSGKACASALEDAGFKVSQID-----------------------------VDRSVG 43
           E+SL           + G +   +                              +   + 
Sbjct: 14  EISLR----IMRTAREMGIETVAVYSEADRLSPHVKFADEAICLGPAASSESYLLGEKII 69

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
            V   L  D      +G   E+      +    + +      A  +   K+ +KQ VS  
Sbjct: 70  KVCKQLNVDAIHPG-YGFLSENAAFAKKVTDSGLIFVGPSPEAIEVMGSKLAAKQAVSKY 128

Query: 104 GVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
            +P+ P     I            I  P +IK   GG   G+ +++ ++     + ++ S
Sbjct: 129 DIPLVPGTEEAISDIPEAKKIAKEIGYPILIKASAGGGGKGMRIVENEKEFEEQMERAIS 188

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                      +++    +   +    L   +  +         ++          P+ +
Sbjct: 189 EAVSAFGDGAVFIEKYITSPRHIEIQILGDQQGNIVYLFERECSIQRRHQKVIEEAPSSV 248

Query: 220 PLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                ++     A    +A    G    +F+ D      ++LE+N +
Sbjct: 249 VTAEMRKAMGEAAVGVAKACNYYGAGTVEFIVDEKLN-FYFLEMNTR 294


>gi|153951249|ref|YP_001397881.1| acetyl-CoA carboxylase [Campylobacter jejuni subsp. doylei 269.97]
 gi|152938695|gb|ABS43436.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter jejuni
           subsp. doylei 269.97]
          Length = 481

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 84/253 (33%), Gaps = 25/253 (9%)

Query: 24  SALEDAGF-KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
            A+   G+  V +I        +      D      +G   E+       E   I +   
Sbjct: 56  DAIR--GYLDVVRI------VEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGP 106

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGS 137
                    +K  ++++++  G+P+ P                   I  P ++K   GG 
Sbjct: 107 KSEVIYKMGNKNIARKLMAENGIPIVPGTEKLNSYTLKEIKIFAEKIGYPVILKASGGGG 166

Query: 138 SLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             GI V+ K+Q +              +N+ +  + +  V+   +   ++GD   ++  +
Sbjct: 167 GRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHL 226

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                       +             I  ++ K +   A  A +A+G       +FL D 
Sbjct: 227 CERDCSIQ----RRHQKMIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDD 282

Query: 253 LSRKVFWLEINVQ 265
              + +++E+N +
Sbjct: 283 Y-NRFYFMEMNTR 294


>gi|146298407|ref|YP_001192998.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacterium
           johnsoniae UW101]
 gi|146152825|gb|ABQ03679.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacterium
           johnsoniae UW101]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/252 (14%), Positives = 75/252 (29%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I +   I +  +
Sbjct: 47  EAVCIGPPPSNLSYLKMSNIIAAAEITNADAIHPG-YGFLSENAKFSKICQEHGIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSS 138
                    DK  +K  + + GVP  P       + +        I  P ++K   GG  
Sbjct: 106 APEMIDRMGDKASAKATMKAAGVPCVPGSDGLLESYEHAQKTAAEIGYPVMMKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  I K+  +      +       + +    + +   +   +   V+GD+      ++
Sbjct: 166 KGMRAIWKEDELLKAWESARQEAAAAFGNDGMYMEKLIEEPRHIEIQVVGDSYGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +  D+   +   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDDLRTRMGEAAVKAAEFIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|56750186|ref|YP_170887.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           elongatus PCC 6301]
 gi|81300188|ref|YP_400396.1| acetyl-CoA carboxylase biotin carboxylase subunit [Synechococcus
           elongatus PCC 7942]
 gi|1399818|gb|AAB88214.1| biotin carboxylase [Synechococcus elongatus PCC 7942]
 gi|56685145|dbj|BAD78367.1| biotin carboxylase [Synechococcus elongatus PCC 6301]
 gi|81169069|gb|ABB57409.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Synechococcus elongatus PCC 7942]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/148 (16%), Positives = 48/148 (32%), Gaps = 6/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSI---PLDLLQSSSWNHGDQLLIEQYVDGIEL 177
              I  P +IK   GG   G+ ++++   +    L     +    G+  L  +       
Sbjct: 149 AAEIGYPVMIKATAGGGGRGMRLVREPADLEKLFLAAQGEAEAAFGNPGLYLEKFIDRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                  A        V   +      +             +  D+ +++   A    QA
Sbjct: 209 HVEFQILADAYG--NVVHLGERDCSIQRRHQKLLEEAPSPALSADLRQKMGDAAVKVAQA 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G    +FL D  +   +++E+N +
Sbjct: 267 IGYIGAGTVEFLVDA-TGNFYFMEMNTR 293


>gi|238020659|ref|ZP_04601085.1| hypothetical protein GCWU000324_00548 [Kingella oralis ATCC 51147]
 gi|237867639|gb|EEP68645.1| hypothetical protein GCWU000324_00548 [Kingella oralis ATCC 51147]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGFPVIIKASGGGGGRGMRVVEKKEDLLKAVEMTRAEAEAAFGNPMVYMERFLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I     K++      A + IG
Sbjct: 209 HVEIQVLADEHGNAIYLGERDCSMQRRHQKIIEEAPAPFITPAQRKKIGEACVAACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|190891203|ref|YP_001977745.1| carbamoyl-phosphate-synthetase [Rhizobium etli CIAT 652]
 gi|190696482|gb|ACE90567.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli
           CIAT 652]
          Length = 397

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 93/264 (35%), Gaps = 17/264 (6%)

Query: 34  SQIDV-DRSVGLVL-AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             ID  D +V L L  +   D       GN         + E L  P     +  + +  
Sbjct: 51  HFIDYSDPNVLLALVENGDFDFVVPT--GNDVAYMSTTFVAEKLGFP-RFDSMETTTIIH 107

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            K   +       +P   S+ ++  +      +  P ++KP    S  G+  +     + 
Sbjct: 108 TKQAFRNFTEQNDIPAPRSVRLHGDSPVETGALRYPLLVKPSDSFSGRGVTKVFDRTELA 167

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  +   +   +++IE++++G      +   ++    +  V       Y   Y     
Sbjct: 168 DAIADARRNSRAAEIVIEEFIEG-----SLHSHSAFIKNQEIVFDVFVDEYCTVYPYQVD 222

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE-INVQPGMT 269
           +   P+++   +  + + +     + +G + G+  + FL       V+ +E +   PG  
Sbjct: 223 SSNHPSRLSETVRSKTRTIMARVIKLLGLQDGLIHTQFL--SNDDDVWIVECMRRCPGDL 280

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S+        G  + +L++ ++
Sbjct: 281 YGSLVDLSL---GIDYADLVITLL 301


>gi|156742882|ref|YP_001433011.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
 gi|156234210|gb|ABU58993.1| acetyl-CoA carboxylase, biotin carboxylase [Roseiflexus
           castenholzii DSM 13941]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            H I  P ++KP  GG   G+ V + +  +      S +            ++       
Sbjct: 148 AHQIGYPVLLKPSGGGGGRGMRVAQNEADLIKAYPTSKAEAEAAFGNSALLMEKYLPQVR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                 +          P+  +  D+   +   A    +AI 
Sbjct: 208 HVEIQVLADQYGHAIHLGERDCSSQRRHQKIVEEAPSPAVNPDLRARMGEAALKGVRAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL DP     +++E+N +
Sbjct: 268 YVNAGTMEFLLDP-DGNFYFIEMNTR 292


>gi|114706292|ref|ZP_01439194.1| propionyl-CoA carboxylase alpha chain precursor [Fulvimarina pelagi
           HTCC2506]
 gi|114538153|gb|EAU41275.1| propionyl-CoA carboxylase alpha chain precursor [Fulvimarina pelagi
           HTCC2506]
          Length = 671

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 57/187 (30%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   D+       +S S           +++       
Sbjct: 152 AAEIGYPVMIKASAGGGGKGMRIAWDDEEAKEGFARSKSEAASSFGDDRIFIEKFVEEPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L          +     ++  +       P+    +  ++     A    +A+ 
Sbjct: 212 HIEIQVLADAHGNCIYLNERECSIQRRNQKVIEEAPSPFLDEETRQKMGEQAVALAKAVE 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D  +R  ++LE+N +              +       G    +L+  M+
Sbjct: 272 YQSAGTVEFIVD-KNRNFYFLEMNTR----------LQVEHPVTELITGV---DLVAEMI 317

Query: 294 EDASCLR 300
             A+  +
Sbjct: 318 RVAAGEK 324


>gi|158451239|gb|ABW38980.1| putative CAD trifunctional protein [Nothus sp. JCR-2007]
          Length = 977

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G       I E   +    + I +   + D+    + ++S    V    +
Sbjct: 436 TFGGQTALNCGVQLQKNKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VNSVEEALAAALQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIKHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|16800462|ref|NP_470730.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria innocua
           Clip11262]
 gi|16413867|emb|CAC96625.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria innocua Clip11262]
 gi|313619075|gb|EFR90881.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           innocua FSL S4-378]
 gi|313623881|gb|EFR93996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           innocua FSL J1-023]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 268 YSGAGTIEFIFDHHENNFYFMEMNTR 293


>gi|261403456|ref|YP_003247680.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
 gi|261370449|gb|ACX73198.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Methanocaldococcus vulcanius M7]
          Length = 618

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 89/301 (29%), Gaps = 36/301 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH--------- 59
           S  A   AL++ G +   +         D D S  L    +  +   N+           
Sbjct: 107 SVHAVL-ALKEMGIEAIIVNNNPETVSTDYDTSDKLYFEPITFEDVLNIAEREKERGELL 165

Query: 60  -------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                  G    +  ++     + I  T    + +A   ++        +       +  
Sbjct: 166 GVIVQFGGQTAINLAMKLKKAGVNILGTTPENINAAEDREEFSKLLKKLNIPQAEGGTAF 225

Query: 113 VNRFTMDSQHLISPPYVIKPLK-GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
                +     I  P +++P    G     IV  +++ I               L+ +  
Sbjct: 226 TKEEALKIAKRIGYPVLVRPSYVLGGRAMQIVYSEEELIEYMEEAVRVSEEHPVLIDKFL 285

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            D IEL    + D    +    +   +       +S  ++T + P  +P +I   V    
Sbjct: 286 EDAIELDVDAVCDGESVLIGAIMEHIEEAG---VHSGDSATVIPPQTLPKEIIDTVIDYT 342

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
               +A+   G+    +        V+ LE N +   T     P ++   G    +L   
Sbjct: 343 AKLARALNIVGLLNVQYAV--KDGVVYVLEANPRASRT----VPYVSKSVGIPLAKLATK 396

Query: 292 M 292
           +
Sbjct: 397 I 397


>gi|30064587|ref|NP_838758.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 2a str. 2457T]
 gi|30042846|gb|AAP18569.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2a str. 2457T]
 gi|281602633|gb|ADA75617.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           flexneri 2002017]
 gi|313648502|gb|EFS12944.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri 2a
           str. 2457T]
 gi|332752459|gb|EGJ82848.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-671]
 gi|332754393|gb|EGJ84759.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           2747-71]
 gi|332765255|gb|EGJ95482.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           2930-71]
 gi|333014570|gb|EGK33917.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-304]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSTDRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|72161351|ref|YP_289008.1| acetyl/propionyl CoA carboxylase alpha subunit: biotin carboxylase
           [Thermobifida fusca YX]
 gi|71915083|gb|AAZ54985.1| putative acetyl/propionyl CoA carboxylase alpha subunit: biotin
           carboxylase [Thermobifida fusca YX]
          Length = 696

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ ++     +      +               +       
Sbjct: 155 AAQIGYPLLLKPSAGGGGKGMRLVHSPDELADAAAAARREARAAFGDATLLAERYVARPR 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   +         L+          P+ +   +    + + A  A +A G
Sbjct: 215 HIEVQILADTHGTIVHLGERECSLQRRHQKIVEEAPSPLLTPEQRNAMGQAAVAAARACG 274

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F+LE+N +
Sbjct: 275 YVGAGTVEFIVPGDDTDRFFFLEMNTR 301


>gi|148253925|ref|YP_001238510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
 gi|146406098|gb|ABQ34604.1| acetyl CoA carboxylase, biotin carboxylase subunit [Bradyrhizobium
           sp. BTAi1]
          Length = 460

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/223 (17%), Positives = 76/223 (34%), Gaps = 5/223 (2%)

Query: 47  AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
              K D      +G   E+      +    I +      A  L  DK+ ++QV +  GVP
Sbjct: 72  KSAKVDAVHPG-YGFLAENAEFAEAVTAAGIVFVGPSAEAIRLLGDKVMARQVAALAGVP 130

Query: 107 VCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             P     +      +   + I  P +IK   GG   GI ++   +       Q+SS   
Sbjct: 131 TVPGSDGRVTDLDAAITIANSIGYPVMIKAAAGGGGRGIRIVGDAEEFARQFPQASSEAA 190

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
                   Y++ +      +    L      V   +      +             +P D
Sbjct: 191 AAFGDGGLYIEKVIERARHVEVQILGDGHDVVHCYERECSLQRRRQKVWEEAPAVGLPDD 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + + +   A    +A+G  G    ++L+D  +   +++E+N +
Sbjct: 251 VRQRLCASAVALGRAVGYSGAGTVEYLYDDATSAFYFIEVNTR 293


>gi|320328979|gb|EFW84978.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           glycinea str. race 4]
          Length = 649

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YMGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|320324606|gb|EFW80683.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           glycinea str. B076]
          Length = 649

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YMGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|306832794|ref|ZP_07465929.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus bovis
           ATCC 700338]
 gi|304425029|gb|EFM28160.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus bovis
           ATCC 700338]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/281 (13%), Positives = 91/281 (32%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G     +    D++ +  +LA            D   N              
Sbjct: 17  IIRAARELGINTVAVYSEADKNSLHTILADEAICIGPARSTDSYLNMNAVLSAAIVTGAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    +  P ++K   GG   GI  ++  + +      +S      + +G 
Sbjct: 137 EVFTAEEALEVADRLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  +V  +            K    + +  +       + 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSHDNVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +A+        +FL D  + + +++E+N +
Sbjct: 253 AQIGDAAIRAAKAVRYENAGTIEFLLDEKTSEFYFMEMNTR 293


>gi|254994165|ref|ZP_05276355.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL J2-064]
          Length = 413

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 107 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 166

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 167 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 226

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 227 YSGAGTIEFIFDHHENNFYFMEMNTR 252


>gi|256822280|ref|YP_003146243.1| carbamoyl-phosphate synthase L chain ATP-binding [Kangiella
           koreensis DSM 16069]
 gi|256795819|gb|ACV26475.1| Carbamoyl-phosphate synthase L chain ATP-binding [Kangiella
           koreensis DSM 16069]
          Length = 669

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 57/182 (31%), Gaps = 15/182 (8%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ ++ K+      L      +       +  V+      
Sbjct: 147 QADEIGYPVIIKATAGGGGKGMRIVWKEDDFASSLASCKRESAASFSDDKVLVEKYITKP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAI 238
             +                     ++          PA    +  +    ++A  A QAI
Sbjct: 207 RHVEIQVFADKHGNAVHLFERDCSVQRRHQKVIEEAPAPGLSEETRSKMGQVAIRAAQAI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---AGYSFRELLLWMVED 295
           G  G    +FL+D      +++E+N +              +      + ++L+ W ++ 
Sbjct: 267 GYVGAGTVEFLYDE-DESFYFMEMNTR----------LQVEHPVTEKITGQDLVEWQLKV 315

Query: 296 AS 297
           A+
Sbjct: 316 AA 317


>gi|209963749|ref|YP_002296664.1| propionyl-CoA carboxylase alpha chain [Rhodospirillum centenum SW]
 gi|209957215|gb|ACI97851.1| propionyl-CoA carboxylase alpha chain [Rhodospirillum centenum SW]
          Length = 666

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/184 (13%), Positives = 51/184 (27%), Gaps = 21/184 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D         +++           +++   +   
Sbjct: 148 AREIGYPVMIKASAGGGGKGMRVAWNDAEARDGFRSATNEARSSFADDRVFIEKYIIDPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++          P+       +      A    +A+ 
Sbjct: 208 HIEIQVLADAHGNCVYLGERECSIQRRHQKVIEEAPSPFLDAATRRAMGEQAVALAKAVQ 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            R     +F+ D   R  ++LE+N +              +       G    +L+  M+
Sbjct: 268 YRSAGTVEFIVD-KDRNFYFLEMNTR----------LQVEHPVTEMITGL---DLVELMI 313

Query: 294 EDAS 297
             A+
Sbjct: 314 RVAA 317


>gi|50548503|ref|XP_501721.1| YALI0C11407p [Yarrowia lipolytica]
 gi|49647588|emb|CAG82031.1| YALI0C11407p [Yarrowia lipolytica]
          Length = 2266

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  +++++       Q      G  + I Q   +   L  
Sbjct: 250 AKQIGFPVMIKASEGGGGKGIRKVEREEDFEAAYHQVEGEIPGSPIFIMQLAGNARHLEV 309

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                  +  +++ A    + +G
Sbjct: 310 QLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTVAGQQTFTAMEKAAVRLGKLVG 365

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 366 YVSAGTVEYLYSHEDDKFYFLELNPR 391


>gi|89094594|ref|ZP_01167532.1| biotin carboxylase [Oceanospirillum sp. MED92]
 gi|89081193|gb|EAR60427.1| biotin carboxylase [Oceanospirillum sp. MED92]
          Length = 446

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 3/149 (2%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   G+ V+  + S+   +  + S           Y++    
Sbjct: 146 HEIARRIGYPVIIKAAAGGGGRGMRVVHSEASLISSIHVTQSEAAAAFGDDTVYMEKFLE 205

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQ 236
               +    L   +            ++          PA     D   +V +    A  
Sbjct: 206 NPRHVEVQVLADGQGNAIHLYDRDCSMQRRHQKVVEEAPAPHLDPDARAQVLQACVDACI 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            IG RG    +FL+   +   +++E+N +
Sbjct: 266 EIGYRGAGTFEFLY--ENGGFYFIEMNTR 292


>gi|322412585|gb|EFY03493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. dysgalactiae ATCC 27957]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFTTMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA   +  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRQEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAKAVA----YENAGTIEFLLDEDSGEFYFMEMNTR 293


>gi|308062360|gb|ADO04248.1| biotin carboxylase [Helicobacter pylori Cuz20]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 86/259 (33%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V++    +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSRLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|261330965|emb|CBH13951.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
           DAL972]
          Length = 382

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/162 (19%), Positives = 59/162 (36%), Gaps = 14/162 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +S P +IK + G SS+G+    K      L    +         L+E++V G E T  V 
Sbjct: 31  LSFPLIIKHVSGYSSVGMDKSCKVYDMDSLHSRVTRFIEQYQIALVEEFVVGDEATILVC 90

Query: 183 GDASLDVTEIAVPKSDFY-----SYELKYSSLNSTHVLPAKIPLD----IYKEVQRLAFL 233
            D++        P           ++  +    +   +  ++  +    + + +      
Sbjct: 91  ADSTQPDGIRVFPPVMVQFPEGEDFKHFHLKWETYEGMEWRLMPEDDPALSQVLSTARTS 150

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFP 275
               +G  G  R D   D  +  V +LEIN   G+    ++P
Sbjct: 151 FMHMMGGVGYGRVDVRIDRSTHDVVFLEINPNCGV----MYP 188


>gi|222106691|ref|YP_002547482.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221737870|gb|ACM38766.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 666

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/273 (15%), Positives = 84/273 (30%), Gaps = 27/273 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      L+   + +    + A     DK+ 
Sbjct: 62  IVIDK-ILEAIRQTGADAVHPG-YGFLSENAAFAEALDKAGVAFIGPPVGAIKAMGDKIT 119

Query: 96  SKQVVSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +         +     I  P +IK   GG   G+ +   D    
Sbjct: 120 SKKLAAEAGVSTVPGHMGLIADADEAVKIAAQIGYPVMIKASAGGGGKGMRIAWNDAEAR 179

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L      V         ++  +   
Sbjct: 180 EGFQSSKNEAMNSFGDDRIFIEKFVDQPRHIEIQVLGDKHGNVLYLGERECSIQRRNQKV 239

Query: 212 THVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+     D  K +   A    +A+G       +F+ D  +R  ++LE+N +     
Sbjct: 240 IEEAPSPFLDADTRKAMGEQAVALAKAVGYYSAGTVEFIVDG-NRNFYFLEMNTR----- 293

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDAS 297
                    +       G    +L+  M+  AS
Sbjct: 294 -----LQVEHPVTELITGL---DLVEQMIRVAS 318


>gi|194245480|gb|ACF35349.1| carbamoylphosphate synthetase [Priacma serrata]
          Length = 857

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V++    V    +
Sbjct: 131 TFGGQTGLNCGVELQKSGVFDKYGVKVLGTPIQSIIDTEDRKIFGEQVNAIGEKVAPSSA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG         +     Q+    H  QL+I++
Sbjct: 191 VYSVQEALEAAEQLGYPVMARAAFSLGGLGSGFADNKDELKSIAQQAL--AHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G           + D         +       ++  +        +    Y  ++  
Sbjct: 249 SLKGXXXXXXXXVRDAFDNCITVCNMENVDP-LGIHTGESIVVAPSQTLTNKEYNVLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AIKVIRHFGIVGECNIQYALNPYSDEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|157374594|ref|YP_001473194.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           sediminis HAW-EB3]
 gi|157316968|gb|ABV36066.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           sediminis HAW-EB3]
          Length = 691

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ +++    +   +  +           +  ++       
Sbjct: 148 ADKMGFPLLIKAAFGGGGKGMRIVESSDEVLEAIQSARREAISSFGNDKLLMERYLRQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       T+            ++          PA     ++  ++   A  A +AI 
Sbjct: 208 HVEVQVFADTQGNCIYLSDRDCSIQRRHQKVVEEAPAPGLSDELRVKMGEAAVAAAKAID 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D      +++E+N +
Sbjct: 268 YRGAGTVEFLLDT-DGSFYFMEMNTR 292


>gi|229542903|ref|ZP_04431963.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           coagulans 36D1]
 gi|229327323|gb|EEN92998.1| Carbamoyl-phosphate synthase L chain ATP-binding [Bacillus
           coagulans 36D1]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/187 (11%), Positives = 56/187 (29%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+ V++ ++ +      +             +++       
Sbjct: 148 AEKIGYPAMLKASAGGGGIGMQVVQSEKELRKAFAGNKKRAEMFFGAGAMFIEKYIEEPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P+    +   +++      A  +IG
Sbjct: 208 HVEIQILADQYGNVVPLMERECSIQRRHQKVVEEAPSPFISEATRQKMLDAVVKAATSIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  + + D   +  ++LE+N +              +       G    +++   +
Sbjct: 268 YINAGTIEMIVD-RDQHFYFLEMNTR----------LQVEHPVTEEITGL---DIVEEQL 313

Query: 294 EDASCLR 300
           + AS  R
Sbjct: 314 KVASGER 320


>gi|167646526|ref|YP_001684189.1| acetyl-CoA carboxylase biotin carboxylase subunit [Caulobacter sp.
           K31]
 gi|167348956|gb|ABZ71691.1| acetyl-CoA carboxylase, biotin carboxylase [Caulobacter sp. K31]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 73/217 (33%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+      +         +  DK+ +KQ V   G+PV P    
Sbjct: 77  AIHPGYGFLSENARFAEIVGAHGYTFIGPKPEHIRMMGDKITAKQAVKDAGIPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       ++   I  P +IK   GG   G+ V +  + +   +  + S          
Sbjct: 137 GVSTEEEAFEAAEKIGFPVLIKAASGGGGRGMKVAQTREDLAEAVSTARSEARAAFGDDT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ- 228
            Y++        +    +  +   V         L+          P+       +    
Sbjct: 197 VYMERYLQKPRHIELQVIADSHGNVVHLGERDCSLQRRHQKVLEEAPSPALGAADRAKIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A +AIG  G+   +FL+     + F++E+N +
Sbjct: 257 KIVVDAVKAIGYLGVGTIEFLW--EDGEFFFIEMNTR 291


>gi|93277189|gb|ABF06413.1| carbamoyl-phosphate synthase [Fontecilla graphicus]
 gi|218526186|gb|ACK86500.1| carbamoyl-phosphate synthase [Fontecilla graphicus]
          Length = 713

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 118 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPDYVEQVIRSERPGGVLL 177

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + VS     V    +
Sbjct: 178 TFGGQTALNCGVELEKAGVFEKYGCKILGTPIQSIIETEDRKIFAEKVSEIGEKVAPSAA 237

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  +I  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 238 VYSVEEALNAAEIIGYPVMARAAFSLGGLGSGFAHNQEQLKS--LAIQALAHSNQLIIDK 295

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 296 SLKGW-KEVEYEVVRDAFDNCVTVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 354

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY   
Sbjct: 355 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLA 406


>gi|46907583|ref|YP_013972.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes serotype 4b str. F2365]
 gi|226223958|ref|YP_002758065.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes Clip81459]
 gi|254824584|ref|ZP_05229585.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J1-194]
 gi|254852595|ref|ZP_05241943.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL R2-503]
 gi|254932328|ref|ZP_05265687.1| acetyl-CoA carboxylase [Listeria monocytogenes HPB2262]
 gi|255520787|ref|ZP_05388024.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes FSL J1-175]
 gi|290893534|ref|ZP_06556517.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J2-071]
 gi|300765403|ref|ZP_07075385.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           FSL N1-017]
 gi|46880851|gb|AAT04149.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           serotype 4b str. F2365]
 gi|225876420|emb|CAS05129.1| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Listeria monocytogenes serotype 4b str. CLIP 80459]
 gi|258605908|gb|EEW18516.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL R2-503]
 gi|290556879|gb|EFD90410.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J2-071]
 gi|293583884|gb|EFF95916.1| acetyl-CoA carboxylase [Listeria monocytogenes HPB2262]
 gi|293593822|gb|EFG01583.1| acetyl-CoA carboxylase [Listeria monocytogenes FSL J1-194]
 gi|300513840|gb|EFK40905.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           FSL N1-017]
 gi|313608938|gb|EFR84690.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           monocytogenes FSL F2-208]
 gi|328467495|gb|EGF38564.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 1816]
 gi|328475071|gb|EGF45859.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           monocytogenes 220]
 gi|332311798|gb|EGJ24893.1| Biotin carboxylase 1 [Listeria monocytogenes str. Scott A]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 268 YSGAGTIEFIFDHHENNFYFMEMNTR 293


>gi|88803444|ref|ZP_01118970.1| carbamoyl-phosphate synthase, large subunit [Polaribacter irgensii
           23-P]
 gi|88781010|gb|EAR12189.1| carbamoyl-phosphate synthase, large subunit [Polaribacter irgensii
           23-P]
          Length = 951

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/256 (11%), Positives = 82/256 (32%), Gaps = 14/256 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H KP+     L G       +   L    +    +   A
Sbjct: 623 DKLYFEPVFW---EHIYDIIRHEKPEGVIVQLGGQ--TALKLAEKLTKYGVKIIGTSFEA 677

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVI 144
             L+ D+     ++    +P     +             +  P +++P       G+ ++
Sbjct: 678 LDLAEDRGNFSTLLKDNNIPYPEFGIAESADEALVLADELDFPILVRPSYVLGGQGMKIV 737

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
              + + + ++       G++LL++ Y+DG  +          D     +   +      
Sbjct: 738 INKEELVVHVVDLLGRMPGNKLLLDHYLDG-AIEAEADAICDADGNVYIIGIMEHIEPCG 796

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
            +S  ++  +    +   + ++++       + +   G+    F        V+ +E N 
Sbjct: 797 IHSGDSNAMLPVFNLGDLVMQQIKDHTHTIARELKTVGLINVQFAV--KDELVYIIEANP 854

Query: 265 QPGMTPVSIFPEMAAY 280
           +   T     P +A  
Sbjct: 855 RASRT----VPFIAKA 866


>gi|256085881|ref|XP_002579139.1| acetyl-CoA carboxylase; methylcrotonyl-CoA carboxylase [Schistosoma
           mansoni]
 gi|238664549|emb|CAZ35378.1| acetyl-CoA carboxylase [Schistosoma mansoni]
          Length = 1101

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 71/250 (28%), Gaps = 20/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVL-----------HGNFGEDGLVQAILELLEIPYT 80
           +   +    S    L         N +           +G   E+ L  A LE + + + 
Sbjct: 4   EAVCVGPSPSAQSYL---NISAILNAVKSTSAQAVHPGYGFLSENTLFAAELEKMNVVFL 60

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGG 136
                A     DK+ SK++ +   V   P                  I  P +IK   GG
Sbjct: 61  GPNSRAIKAMGDKIESKRIANQAKVNCIPGYDGEVDGPDEAARIAAEIGYPVMIKASTGG 120

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ +   ++ +      S S            ++        +    L         
Sbjct: 121 GGKGMRIAWDEKEVREGYRLSKSEAKASFGDDRMLIEKFIDNPRHIEIQLLCDRHGNAIY 180

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +     ++  +       P+      + K +   A    +A+        +FL D    
Sbjct: 181 LNERECSIQRRNQKVIEEAPSTFLDSGLRKAMGEQAVSLAKAVNYDSAGTVEFLVDSKRN 240

Query: 256 KVFWLEINVQ 265
             ++LE+N +
Sbjct: 241 -FYFLEMNTR 249


>gi|297584562|ref|YP_003700342.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           selenitireducens MLS10]
 gi|297143019|gb|ADH99776.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus
           selenitireducens MLS10]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +  +   +  +      +      Y++       
Sbjct: 148 AESIGYPVIIKATAGGGGKGIRVARNESELRKGISVTQKEAKANFGNEGVYLEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +      V         ++          P+      + +++ + A  A  A+ 
Sbjct: 208 HVEIQVMADRFGNVIHLGERDCTIQRRLQKLVEETPSPAVSKAVREKMGQAAVKAAAAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD  + + +++E+N +
Sbjct: 268 YTGAGTIEFIFDHNTDEFYFMEMNTR 293


>gi|295098841|emb|CBK87930.1| acetyl-CoA carboxylase, biotin carboxylase [Eubacterium
           cylindroides T2-87]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/319 (13%), Positives = 97/319 (30%), Gaps = 61/319 (19%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHLKP--------DLAFN-------------- 56
              A ++ G +   +       S+ + LA            D   N              
Sbjct: 17  IIRACKELGIETVVVYSTADKESLAVQLADQAVCIGPAPAKDSYLNMGLIVQTACSTGCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
            +H   G   E+     +++  ++ +         +  DK ++++++   GVP       
Sbjct: 77  AVHPGYGFLSENAKFARLVQECDMTFVGPNPKLIQMMGDKTQARKLMKEAGVPVVEGCED 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
           ++       +    I  P +IK   GG   G+ ++ K + +     +        + + +
Sbjct: 137 ALKSVEDAKNMAESIGYPVIIKARLGGGGRGMRIVYKAEDLENAYTEARQEAKVCFENDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +     +   +   ++GD    V  +      F     K         L       + 
Sbjct: 197 VYMERYVENPKHIEVQILGDHYGHVVHLFERDCSFQRKNQKIIEEAPCTALTRDNREKLL 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---- 280
                 A  A ++IG       +FL D      +++E+N +              +    
Sbjct: 257 S----QAVNAARSIGYDSAGTMEFLMDKQGN-FYFMEMNTR----------IQVEHPVTE 301

Query: 281 --AGYSFRELLLWMVEDAS 297
              G    +L+ W ++ AS
Sbjct: 302 AITGV---DLIKWQIKIAS 317


>gi|154283467|ref|XP_001542529.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Ajellomyces capsulatus NAm1]
 gi|150410709|gb|EDN06097.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Ajellomyces capsulatus NAm1]
          Length = 1182

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVESVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 186

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +         + +   +    + I    +S D+    + ++   +P+  S+ 
Sbjct: 187 TFGGQTALNLGVQMNRMGVFDRYGVKVLGTSIRTLEVSEDRDLFAKALNEISIPIAESVA 246

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 247 VNSVDEALEAAEKIGYPIIVRSAYALGGLGSGFANNAEELKN--LSSRSLTLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|150005296|ref|YP_001300040.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           ATCC 8482]
 gi|294777133|ref|ZP_06742590.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           PC510]
 gi|172048830|sp|A6L404|PURT_BACV8 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|149933720|gb|ABR40418.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           ATCC 8482]
 gi|294449002|gb|EFG17545.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides vulgatus
           PC510]
          Length = 389

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A       F+V   +D D ++  V+A  KPD+    +     E         +  +
Sbjct: 39  AMQVADE-----FEVFSMLDGD-ALDAVVAKHKPDIIVPEIEAIRTERLYHLEQEGIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P V+KPL   S
Sbjct: 93  PSARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSLEELQEAAKEIGFPCVVKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  ++K    +          + GD   +        +             +      
Sbjct: 152 GKGQSLVKSADELEQAWHYGCEGSRGDIKELIIEE---FIQFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +  KE QR+A     A+   GI   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|82703865|ref|YP_413431.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosospira
           multiformis ATCC 25196]
 gi|82411930|gb|ABB76039.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosospira
           multiformis ATCC 25196]
          Length = 452

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 67/218 (30%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFVFIGPRPETIRLMGDKVSAKNAMKKAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                          I  P +IK   GG   G+ V+  + ++   ++ + +         
Sbjct: 137 GLPESVDEIKAIARAIGYPIIIKAAAGGGGRGMRVVHTEAALSNAVIITRNEAQAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEV 227
             Y +        +    L                 +          PA  IP  +   +
Sbjct: 197 TVYAEKYLENPRHIEFQVLADEHRNAIYLGERDCSTQRRHQKIIEEAPALGIPPRLRDRM 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + IG RG+   +FLF     + +++E+N +
Sbjct: 257 GTRCVDACKRIGYRGVGTFEFLF--EKNEFYFIEMNTR 292


>gi|324499773|gb|ADY39912.1| Acetyl-CoA carboxylase 2 [Ascaris suum]
          Length = 2203

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/183 (15%), Positives = 64/183 (34%), Gaps = 5/183 (2%)

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
            L      +     +V +   +  C S       +  +  I  P +IK  +GG   GI  
Sbjct: 245 FLPKEECENGRCGIEVSNELRMAACVSDHEEAIRIMKEKNIPYPVMIKASEGGGGKGIRK 304

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSY 202
           I+ +    ++  +  +   G  + +   ++G   +   ++GD    V  +          
Sbjct: 305 IRCEAEFEVNFRRVQAEIPGGHIFLMHCLEGARHIEVQLLGDMYGQVIALRTRDCSVQRR 364

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
             K          P      + + ++  A    + +G       ++LF P + + F+LE+
Sbjct: 365 CQKIIEEAPAIAAPLS----VQRSMEADAVRLAKMVGYVSAGTVEYLFLPSTNEYFFLEL 420

Query: 263 NVQ 265
           N +
Sbjct: 421 NPR 423


>gi|301022195|ref|ZP_07186112.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 69-1]
 gi|300397662|gb|EFJ81200.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 69-1]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACIDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|238758364|ref|ZP_04619542.1| Biotin carboxylase [Yersinia aldovae ATCC 35236]
 gi|238703487|gb|EEP96026.1| Biotin carboxylase [Yersinia aldovae ATCC 35236]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLDDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L   +            ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGKAIYLAERDCSMQRRHQKVVEEAPAPGITSEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGERCAKACVDIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|225025423|ref|ZP_03714615.1| hypothetical protein EIKCOROL_02321 [Eikenella corrodens ATCC
           23834]
 gi|224941707|gb|EEG22916.1| hypothetical protein EIKCOROL_02321 [Eikenella corrodens ATCC
           23834]
          Length = 459

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 AERVGYPVIIKASGGGGGRGMRVVEKREDLIKAVEMTKAEAEAAFGNPMVYMERFLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P   I     +++ +    A + IG
Sbjct: 209 HVEVQVLADEHGNAIYLGERDCSMQRRHQKVIEEAPAPGITAKEREKIGKACVAACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|221122546|ref|XP_002162947.1| PREDICTED: similar to predicted protein, partial [Hydra
           magnipapillata]
          Length = 559

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/228 (12%), Positives = 69/228 (30%), Gaps = 7/228 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  +      D      +G   E            I +         +  DK+++++  
Sbjct: 112 EIVRIAKEHDVDAIHPG-YGFLSERHDFARACIKNGIKFIGPSPEVLYMMGDKIQARKAA 170

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +  +PV P     +               P ++K   GG   G+ V++    +P     
Sbjct: 171 IANNIPVVPGTDSPVKKIDEVAAFCEKYGYPVILKAAYGGGGRGMRVVRNKDELPKMFEL 230

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           ++S           +V+    +   +    +     +V         ++        + P
Sbjct: 231 ATSEATAAFGDGSMFVEKFIESPRHIEVQIIGDHYGSVVHLFERDCSVQRRHQKVIEIAP 290

Query: 217 AKIPLDIYKEV-QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           A +  +  +      A    +A+        +FL D  +   +++E+N
Sbjct: 291 APLLNEKTRRTLTECAVRLCKAVNYGNAGTVEFLLDE-NGNHYFIEVN 337


>gi|217964497|ref|YP_002350175.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           HCC23]
 gi|217333767|gb|ACK39561.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           HCC23]
 gi|307570939|emb|CAR84118.1| acetyl-CoA carboxylase, biotin carboxylase [Listeria monocytogenes
           L99]
          Length = 454

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+FD      +++E+N +
Sbjct: 268 YSGAGTIEFIFDHHENNFYFMEMNTR 293


>gi|126740468|ref|ZP_01756155.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Roseobacter
           sp. SK209-2-6]
 gi|126718269|gb|EBA14984.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Roseobacter
           sp. SK209-2-6]
          Length = 655

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/247 (17%), Positives = 74/247 (29%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I         L   K      D   + +H   G   E+    +      + +    
Sbjct: 49  QAILIGPGPVGASYLDAEKIVQAALDAGVDAVHPGYGFLSENADFASACAAAGLIFIGPR 108

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A AL  +K  +K  +   GVP  P        +         I  P +IK   GG   
Sbjct: 109 PDAIALMGNKAAAKGKMLQAGVPCVPGYEGAEQASEALKTQAARIGYPVMIKAAAGGGGR 168

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ ++  +      L  + S         E  ++        +    L      V     
Sbjct: 169 GMRLVSSEADFTSSLELAKSEALSAFGSDEMILERAVQNPRHVEIQILADVHGHVIHLGE 228

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P+      +   + + A  A +AIG  G    +FL D  S   +
Sbjct: 229 RDCSVQRRHQKVVEEAPSPALDPALRARMGKAAVEAARAIGYLGAGTVEFLLDE-SGDFY 287

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 288 FLEMNTR 294


>gi|251790330|ref|YP_003005051.1| urea carboxylase [Dickeya zeae Ech1591]
 gi|247538951|gb|ACT07572.1| urea carboxylase [Dickeya zeae Ech1591]
          Length = 1204

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 42/144 (29%), Gaps = 1/144 (0%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+     + ++                    +V+        +
Sbjct: 149 RIGYPVMLKSTAGGGGIGLTRCADEPALRQAWDSVRRLGEQFFSDAGVFVERCVDHARHI 208

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
                   +  V         L+  +       PA   P      + R A      +  R
Sbjct: 209 EVQIFGDGKGNVVALGERDCSLQRRNQKVVEESPAPHLPAATRDALLRAAMQLGALVNYR 268

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                +F++D      ++LE+N +
Sbjct: 269 SAGTVEFIYDAGQDAFYFLEVNTR 292


>gi|194245504|gb|ACF35361.1| carbamoylphosphate synthetase [Chauliognathus opacus]
          Length = 671

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALKEENIITVLINPNIATVQTSKGMADKVYFLPLTAEYVLQVIKAERPQGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   + I +   +    + I     + D+    + ++     V    +
Sbjct: 131 TFGGQTALNCGIELDKEGIFQQYGVEILGTPIQTIIDTEDRKIFGEKIAEIGEKVAPSCA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   S  H  QL+I++
Sbjct: 191 VYSVQEALEAAEQLGYPVMARAAFALGGLGSGFADNKEEL--KCLAIQSLAHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G            +    I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEIEYEVVRDVQDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYNMLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AIKVIRHLGVVGECNIQYALNPSSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|168181064|ref|ZP_02615728.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           NCTC 2916]
 gi|182668134|gb|EDT80113.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium botulinum
           NCTC 2916]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGVFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|170084555|ref|XP_001873501.1| 3-methylcrotonyl-CoA carboxylase [Laccaria bicolor S238N-H82]
 gi|164651053|gb|EDR15293.1| 3-methylcrotonyl-CoA carboxylase [Laccaria bicolor S238N-H82]
          Length = 683

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/193 (16%), Positives = 65/193 (33%), Gaps = 26/193 (13%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKK-----DQSIPLDLLQSSSWNHGDQLLIEQYV 172
            +    I  P +IK + GG   G+  +            L   + S    G+  ++ +  
Sbjct: 151 FEQAQQIGFPVLIKAIHGGGGKGMRAVTTPTVSAFNEALLSAQRESLKAFGNDTVLVEKY 210

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLA 231
                   V   A      ++          ++  +       PA     ++  ++   A
Sbjct: 211 IERPRHVEVQVFADSLGGVVS---LWERDCSVQRRNQKIIEEAPAPGLSPELRADLSAKA 267

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFR 286
             A +A+   G    +F+FD  +++ +++E+N       P         EM    G    
Sbjct: 268 IAAARAVNYVGAGTVEFIFDNDTQRFYFMEMNTRLQVEHP-------VTEM--VTGL--- 315

Query: 287 ELLLWMVEDASCL 299
           +L+ W +E AS  
Sbjct: 316 DLVEWQLEVASGN 328


>gi|148380681|ref|YP_001255222.1| putative carbamoyl phosphate synthase large subunit [Clostridium
           botulinum A str. ATCC 3502]
 gi|153931646|ref|YP_001384965.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum A
           str. ATCC 19397]
 gi|153935240|ref|YP_001388435.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum A
           str. Hall]
 gi|226950135|ref|YP_002805226.1| ATP domain protein [Clostridium botulinum A2 str. Kyoto]
 gi|148290165|emb|CAL84284.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
           3502]
 gi|152927690|gb|ABS33190.1| ATP-grasp domain protein [Clostridium botulinum A str. ATCC 19397]
 gi|152931154|gb|ABS36653.1| ATP-grasp domain protein [Clostridium botulinum A str. Hall]
 gi|226841040|gb|ACO83706.1| ATP domain protein [Clostridium botulinum A2 str. Kyoto]
          Length = 342

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 86/278 (30%), Gaps = 20/278 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           K + I+   S+  +    K DL   +    F      +   + L      S     ++  
Sbjct: 47  KCTDINYIDSLLDICKKEKIDLLIPLYEREFNTLCNNREKFKELGTTLLLSHKNLISICN 106

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK  + +      +    S           D+   ++ P+++KPL G  S G+       
Sbjct: 107 DKWNTYKFFIENNINTPISYTKENIENILKDNPEKLNFPFILKPLDGMGSAGVFKANNKT 166

Query: 149 SI-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +      +       +  G +  I+   D       ++    ++V    V KS   +++
Sbjct: 167 QLDFFKDYIKEPIIQEFVEGTEYTIDVLCDLKGEIISIVPRERIEVRSGEVSKSKTVNHK 226

Query: 204 LKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                     +    H+   K+   +  +      L        G      +      ++
Sbjct: 227 EIIKATLNLVNKLKQHIEEYKVYCKVASKNFNTLSLEKDEASVIGPLTIQCIVTKEK-EI 285

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++EIN + G       P      G  + +   +MVE+
Sbjct: 286 KFIEINPRFG----GGVPLSFEA-GVDYGKYFKYMVEE 318


>gi|121700879|ref|XP_001268704.1| urea amidolyase, putative [Aspergillus clavatus NRRL 1]
 gi|119396847|gb|EAW07278.1| urea amidolyase, putative [Aspergillus clavatus NRRL 1]
          Length = 1250

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/183 (10%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G++    +  +        S           +++    +  
Sbjct: 149 AKALGFPVMLKATAGGGGMGLLTCSSEAEVRKAFATVKSRGEALFKNAGLFIERYYPSSH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK---IPLDIYKEVQRLAFLAHQA 237
            +                     ++          P+        + K +   A    ++
Sbjct: 209 HIEVQVFGNGNGKAIYIGERECSIQRRHQKVIEECPSPLVSRNPGLRKALGEAAVRLAES 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           I        ++L D  +   F+LE+N             +    G +   +  +L+  M+
Sbjct: 269 INYGSAGTIEYLVDDETGAFFFLEMNT-----------RLQVEHGITELCYGLDLVELML 317

Query: 294 EDA 296
           + A
Sbjct: 318 KQA 320


>gi|238797916|ref|ZP_04641407.1| Biotin carboxylase [Yersinia mollaretii ATCC 43969]
 gi|238718221|gb|EEQ10046.1| Biotin carboxylase [Yersinia mollaretii ATCC 43969]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLTDDVTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRHIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|320120488|gb|EFE28680.2| hypothetical protein HMPREF0389_00597 [Filifactor alocis ATCC
           35896]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 54/193 (27%), Gaps = 14/193 (7%)

Query: 77  IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
            P    GI    +  DK           +P    +  + F    +  +  P ++KP    
Sbjct: 156 FPMQEKGIYTKLMDKDKFYQFCQEIGAVIPETVLLDEDNFMEKVKQNVGFPCMVKPADSP 215

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
           S                + +       ++ + +     I++    +     D        
Sbjct: 216 SF--------MHEFRQKMFKVCDEKELEEAVAKAKEKNIDVFIQRIIPGFDDHMYTFDAY 267

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF------LAHQAIGCRGISRSDFLF 250
            +       +++       P      +Y   + +           +  G RG +  +F  
Sbjct: 268 INQEGEITHWTTCQKYRQYPINFGASVYTTQKYVKELYDIAAPFLKKTGFRGFAEIEFKK 327

Query: 251 DPLSRKVFWLEIN 263
           D  + + + +E+N
Sbjct: 328 DENTGQFYIIEVN 340


>gi|299116161|emb|CBN76068.1| carboxylase [Ectocarpus siliculosus]
          Length = 745

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 49/150 (32%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK + GG   G+ +++  +     L          +     LL     +  
Sbjct: 179 AKRVGFPVMIKAVMGGGGKGMRLVQTPEGFQSALEACRREAAAGFADDRMLLERYVNEPR 238

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            K         +      ++ +     A  A 
Sbjct: 239 HVEVQVFADTLGNAVHLFERDCSVQRRHQKVLEEAPAPGISDATRAELGE----AAVRAA 294

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+G  G    +FL D  +++ F+ E+N +
Sbjct: 295 KAVGYVGAGTVEFLMDTRTQEFFFCEMNTR 324


>gi|284043915|ref|YP_003394255.1| pyruvate carboxylase [Conexibacter woesei DSM 14684]
 gi|283948136|gb|ADB50880.1| pyruvate carboxylase [Conexibacter woesei DSM 14684]
          Length = 1127

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 1/144 (0%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P  +K   GG   G+ ++     +   + ++ S           Y++   +    +
Sbjct: 150 RIGFPVFVKASHGGGGRGMRLVTDPAKLAAAVQEARSEAEAAFGDGTVYIEQALIRPRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
               L      V         L+        + PA     ++   +   A    + +   
Sbjct: 210 EVQLLGDATGEVVHLYERDCSLQRRHQKVIEITPAPNLAPELRDRICADAVKFARHVSYV 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                +FL DP + +  ++E+N +
Sbjct: 270 NAGTVEFLLDPAAGRYAFIEMNPR 293


>gi|260578481|ref|ZP_05846395.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium ATCC 43734]
 gi|258603503|gb|EEW16766.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           jeikeium ATCC 43734]
          Length = 411

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/278 (14%), Positives = 83/278 (29%), Gaps = 33/278 (11%)

Query: 19  GKACASALEDAGFKVSQ------------------IDVD--RSVGLVLAHLKPDLAFNVL 58
           G+  A AL+  G +V                    +D+    ++  ++  + P       
Sbjct: 27  GRELAIALQRLGVEVHAADRYAGAPAHLVANKAHVLDIHDGDAIRQLVREVGPHFVVP-- 84

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC---GVPVCPSILVNR 115
             +      V   LE  E+       LA+ L+M++   +                     
Sbjct: 85  -DSETIPADVLQELEADEVASVVPTALANRLTMNREGIRTFAHDKLGLPNSAFRFASTAD 143

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVD 173
               +   I  P V+KP+   S  G   +     +          S  +  ++++EQY+ 
Sbjct: 144 ELARAAEEIGYPCVVKPVMSSSGAGQSYVGGVDELEAAWNAALKHSRTNAQRVMVEQYIP 203

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
                  +   +    T              +          PA +  D     + +A  
Sbjct: 204 FDYEVTILAVRSIDPATGREATWFCEPIGHRQDRGDYVESWQPAHMSEDALDTARSIAAR 263

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
              A+G RG+   +         V++ E++ +P   GM
Sbjct: 264 IATALGGRGVYGVELFV--KGDDVYFSEVSPRPHDTGM 299


>gi|120609552|ref|YP_969230.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
 gi|120588016|gb|ABM31456.1| acetyl-CoA carboxylase, biotin carboxylase [Acidovorax citrulli
           AAC00-1]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 50/141 (35%), Gaps = 3/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+  + ++   +  + +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAQAAFGNPAVYMEKFLQNPRHIEIQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            L                ++          PA  IP  + +++      A + IG RG  
Sbjct: 214 VLADKFRNAVYLGERDCSMQRRHQKVIEEAPAPGIPRKLIEKIGERCVAACKKIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL+   + + +++E+N +
Sbjct: 274 TFEFLY--ENGEFYFIEMNTR 292


>gi|84515421|ref|ZP_01002783.1| acetyl-CoA carboxylase [Loktanella vestfoldensis SKA53]
 gi|84510704|gb|EAQ07159.1| acetyl-CoA carboxylase [Loktanella vestfoldensis SKA53]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/221 (14%), Positives = 71/221 (32%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E   + +         +  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLSENAAFVQAVEDHGLTFIGPTAEHIRIMGDKITAKDTMKALGVPCVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +        +  P +IK   GG   G+ V      +      + +     + + +
Sbjct: 137 GVPTLKDAQRVGEEVGYPVIIKATAGGGGRGMKVALTAADMEKAFHGARAEAKAAFGNDE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   V GD   +   +            +             I  ++ 
Sbjct: 197 VYIEKYLTTPRHIEIQVFGDGKGNAVHLGERDCSLQ----RRHQKVFEEAPGPVITPELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + ++   A  AI   G    +FLF   + + +++E+N +
Sbjct: 253 ARIGKVCADAVAAINYIGAGTIEFLF--ENDEFYFIEMNTR 291


>gi|332752418|gb|EGJ82808.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           4343-70]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSTDRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLSDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + + +    A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGKRCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|330880727|gb|EGH14876.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
          Length = 467

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YMGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|328472972|gb|EGF43820.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio
           parahaemolyticus 10329]
          Length = 391

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 77/283 (27%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                      +++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSYVLDMLDGKALEEIINKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +                  
Sbjct: 82  EAIATDKLVELEEKGLNVVPTAKATKLTMNREGIRRLAAEELDLST-SPYRFADNYDDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK +  I        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKTEDDIEKA--WDYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENAIKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|218526164|gb|ACK86489.1| carbamoyl-phosphate synthase [Australysmus lacustris]
          Length = 725

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALREEKIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIRSERPTGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + ++     V    +
Sbjct: 188 TFGGQTALNCGVELERAKVFAKYNCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG     K++ +    L   +  H  QL+I++
Sbjct: 248 VYSVGEALEAAEVLGYPVMARAAFSLGGLGSGFANKNEELKT--LAVQALAHSSQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|170098412|ref|XP_001880425.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
 gi|164644863|gb|EDR09112.1| carbamoyl-phosphate synthase [Laccaria bicolor S238N-H82]
          Length = 1164

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 47/318 (14%), Positives = 92/318 (28%), Gaps = 42/318 (13%)

Query: 1   MAVL-MGGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------- 39
           + V+  GG+S     E +    SG     AL + G     I+ +                
Sbjct: 84  VVVVGSGGLSIGQAGEFD---YSGSQALKALSEEGVSAVLINPNIATWQTSHELASEVYF 140

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGN------FGEDGLVQAILELLEIPYTHSGILASA 88
                  V  VL   +PD       G          D +       +++  T    L  +
Sbjct: 141 LPITADYVAYVLEKERPDGILLTFGGQSALNVGIELDRMGVLERLGVKVLGTPIHTLEVS 200

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
              D            V    ++      +++  +I  P +++       LG        
Sbjct: 201 EDRDLFVQALKEIDIPVAQSTAVSSVNAALEAAEVIGYPVILRSAFTLGGLGSGFANNPD 260

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +    L +   +   Q+LIE+ + G                 I     + +     ++ 
Sbjct: 261 ELRD--LAAKGLSLSPQVLIERSMKGW-KELEYEVVRDAADNTIICCNMENFDPLGTHTG 317

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            +        +P D Y  ++  A    + +G  G     +  +P SR+   +E+N +   
Sbjct: 318 DSIVVAPSQTLPDDEYHMLRSAALKVIRHLGVVGECNIQYALNPTSREYCVIEVNAR--- 374

Query: 269 TPVSIFPEMAAYAGYSFR 286
              S     +   GY   
Sbjct: 375 -YESRSALASKATGYPLA 391


>gi|163737430|ref|ZP_02144847.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
 gi|161388956|gb|EDQ13308.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           BS107]
          Length = 696

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D         S +           +++        
Sbjct: 164 NEIGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 223

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  +      A    +A+G 
Sbjct: 224 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEDTRRAMGEQAVALAKAVGY 283

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 284 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 329

Query: 295 DA 296
            A
Sbjct: 330 IA 331


>gi|56420934|ref|YP_148252.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus
           kaustophilus HTA426]
 gi|56380776|dbj|BAD76684.1| acetyl-CoA carboxylasesubunit (biotin carboxylasesubunit)
           [Geobacillus kaustophilus HTA426]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +  +   +  +             Y++       
Sbjct: 148 AEEIGYPVIIKATAGGGGKGIRVARDEGELVKGINITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +             ++          P+    D  +      A  A +A+ 
Sbjct: 208 HVEIQVLADSYGNTIHLGERDCSIQRRLQKLVEEAPSPALDDEMRRKMGEAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D  +++ +++E+N +
Sbjct: 268 YTGAGTVEFIYDHRNKQFYFMEMNTR 293


>gi|238782963|ref|ZP_04626991.1| Biotin carboxylase [Yersinia bercovieri ATCC 43970]
 gi|238716166|gb|EEQ08150.1| Biotin carboxylase [Yersinia bercovieri ATCC 43970]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 84/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   + +          ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGSAIYLAERDCSMQRRHQKVVEEAPAPGITGEMR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|323173485|gb|EFZ59114.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli LT-68]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|311029912|ref|ZP_07708002.1| biotin carboxylase [Bacillus sp. m3-13]
          Length = 447

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 64/191 (33%), Gaps = 29/191 (15%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+   +  + I     Q+       + + D  + +   +  
Sbjct: 147 AEKIGFPVMLKASGGGGGIGMHRCENREDIENTFEQTKKRAKAYFKNEDMFIEKYVGNAK 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GDA  +V  +            + +           +  +  K++   A LA 
Sbjct: 207 HIEVQIFGDAHGNVVHMFERNCSVQ----RRNQKVIEEAQSPAMSEETRKKICEAAVLAA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
           + +  +     +F+ D      ++LE+N +              +       G    +L+
Sbjct: 263 KEVDYKNAGTVEFIMDEEEN-FYFLEMNTR----------LQVEHPITECITGL---DLV 308

Query: 290 LWMVEDASCLR 300
            W ++ A+  +
Sbjct: 309 EWQLQVAAGEK 319


>gi|294637769|ref|ZP_06716043.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Edwardsiella
           tarda ATCC 23685]
 gi|291089061|gb|EFE21622.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Edwardsiella
           tarda ATCC 23685]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 44/285 (15%), Positives = 89/285 (31%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAQSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +L + +     +
Sbjct: 134 SDGPLDDDMEKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDKELAQSILMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|261417742|ref|YP_003251424.1| acetyl-CoA carboxylase biotin carboxylase subunit [Geobacillus sp.
           Y412MC61]
 gi|319767446|ref|YP_004132947.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC52]
 gi|261374199|gb|ACX76942.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC61]
 gi|317112312|gb|ADU94804.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y412MC52]
          Length = 451

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +  +   +  +             Y++       
Sbjct: 148 AEEIGYPVIIKATAGGGGKGIRVARDEGELVKGINITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +             ++          P+    D  +      A  A +A+ 
Sbjct: 208 HVEIQVLADSYGNTIHLGERDCSIQRRLQKLVEEAPSPALDDEMRRKMGEAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D  +++ +++E+N +
Sbjct: 268 YTGAGTVEFIYDHRNKQFYFMEMNTR 293


>gi|163740889|ref|ZP_02148282.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
 gi|161385880|gb|EDQ10256.1| propionyl-CoA carboxylase, alpha subunit [Phaeobacter gallaeciensis
           2.10]
          Length = 681

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 50/182 (27%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D         S +           +++        
Sbjct: 149 NEIGYPVMIKASAGGGGKGMRIAWSDAEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  +      A    +A+G 
Sbjct: 209 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEDTRRAMGEQAVALAKAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 IA 316


>gi|123443993|ref|YP_001007963.1| acetyl-CoA carboxylase biotin carboxylase subunit [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|122090954|emb|CAL13836.1| biotin carboxylase [Yersinia enterocolitica subsp. enterocolitica
           8081]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLDDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|298364402|gb|ADI79337.1| chloroplast biotin carboxylase [Brassica rapa]
          Length = 535

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P +IK   GG   G+ +  +       L Q+ S     + +    L +   +  
Sbjct: 218 ANEIGYPVMIKATAGGGGRGMRLANEPSEFVKLLQQAKSEAAAAFGNDGVYLEKYVQNPR 277

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D   +V               + +           +  ++ K +   A  A 
Sbjct: 278 HIEFQILADKFGNVVHFGERDCSIQ----RRNQKLLEEAPSPALTPELRKAMGDAAVAAA 333

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +IG  G+   +FL D      +++E+N +
Sbjct: 334 ASIGYIGVGTVEFLLDER-GSFYFMEMNTR 362


>gi|270293313|ref|ZP_06199522.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M143]
 gi|270278162|gb|EFA24010.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. M143]
          Length = 455

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S   +++E+N +
Sbjct: 257 S----AAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNTR 293


>gi|262368119|pdb|3JZF|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazoles Series
 gi|262368120|pdb|3JZF|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazoles Series
 gi|262368121|pdb|3JZI|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazole Series
 gi|262368122|pdb|3JZI|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Benzimidazole Series
          Length = 486

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 35  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 94

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 95  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 154

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 155 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 214

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 215 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 270

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 271 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 313


>gi|229529688|ref|ZP_04419078.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           12129(1)]
 gi|229333462|gb|EEN98948.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio cholerae
           12129(1)]
          Length = 393

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 83/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPYFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 84  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SAYQFADSYESFA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 143 AAVETIGLPCVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 201 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 259 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 316

Query: 290 LW 291
            +
Sbjct: 317 QY 318


>gi|198429082|ref|XP_002125037.1| PREDICTED: similar to carboxylase:pyruvate/acetyl-coa/propionyl-coa
           [Ciona intestinalis]
          Length = 1204

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 81/244 (33%), Gaps = 18/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             +D    +  ++A  K D+  + +H   G   E            I +           
Sbjct: 112 KPVDAYLHIPEIIATAK-DVGVDAIHPGYGFLSERSDFAHACVQAGIKFIGPTPDVVQQM 170

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+ ++++  + GVPV P     +               P + K   GG   G+  + +
Sbjct: 171 GDKVAARKIAIAAGVPVVPGTDEPVTTLDEAKSFVQKYGFPVIFKAAYGGGGRGMRFVNQ 230

Query: 147 DQSI----PLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYS 201
              +       + ++        + IE+Y++G   +   ++GD   ++  +         
Sbjct: 231 MSELEDNFNRAVSEAEKAFGNGSMFIERYLEGPRHIEVQILGDQLGNMVHLYERDCSIQR 290

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              K   L     LP      + + +   A    + +        +FL D    + +++E
Sbjct: 291 RYQKVVELAPAFNLPIG----LRRILADDALKIAKHVNYENAGTVEFLLDAQ-GRHYFIE 345

Query: 262 INVQ 265
           +N +
Sbjct: 346 VNSR 349


>gi|171680141|ref|XP_001905016.1| hypothetical protein [Podospora anserina S mat+]
 gi|170939697|emb|CAP64923.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1169

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 94/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGF--------------------KVSQIDVDRS-VGLVLAHLKPDLAFN 56
           SG     AL++AG                     +V  + +    V  V+   +PD  F 
Sbjct: 114 SGSQALKALKEAGVSSVLMNPNIATIQTNHSLADEVYYLPITPEYVEYVIQKERPDGIFL 173

Query: 57  VLHGNFGEDGLVQA----ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +  VQ     + E   +    + +    LS D+    + +    +P+  SI 
Sbjct: 174 SFGGQTALNLGVQMEKLGMFEKYGVRVLGTSVRTLELSEDRDLFAKALEEINIPIAKSIA 233

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   I  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 234 VNTLDDALEAARNIGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 291

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + Y  ++  
Sbjct: 292 SLKGW-KEVEYEVVRDANNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 350

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 351 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 402


>gi|82751206|ref|YP_416947.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
 gi|82656737|emb|CAI81166.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus RF122]
          Length = 453

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R +   +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSVGTIEFLVT--DNAHYFIEMN 288


>gi|15803790|ref|NP_289824.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 EDL933]
 gi|12517883|gb|AAG58384.1|AE005553_6 acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. EDL933]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNXIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|307244099|ref|ZP_07526217.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
 gi|306492470|gb|EFM64505.1| conserved hypothetical protein [Peptostreptococcus stomatis DSM
           17678]
          Length = 405

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 69/240 (28%), Gaps = 16/240 (6%)

Query: 37  DVDRSVGLVLAHLK--PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM--- 91
           D D+ V ++L   K  P     +L G   E   +    +           + + L     
Sbjct: 59  DPDKFVNILLDEAKKHPADVKLILMGCTDEYAELIIDRKDQLKDAFVLPYIDADLKNRLV 118

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGI--------IV 143
           +K     V    G+    + + N+           P ++K     S             V
Sbjct: 119 EKESFYAVCEEYGLDYPKTYIYNKGDQTRDFGFMYPVIVKASDSISFFQNPFEGMNKAYV 178

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
              ++     +    S  +   ++++ ++ G +    V+   S    ++ +        E
Sbjct: 179 AHSEEEFNQIISDVYSHGYEKSMIVQDFIPGEDDHMRVLTCYSDQNAKVKMMCLGHVLLE 238

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                    H        +   E  +      + IG  G S  D  +D    K    EIN
Sbjct: 239 EHTPKGIGNHAAIITEYEEELMEKYK---TFLEKIGYVGFSNFDIKYDDRDGKFKVFEIN 295


>gi|294498135|ref|YP_003561835.1| pyruvate carboxylase [Bacillus megaterium QM B1551]
 gi|294348072|gb|ADE68401.1| pyruvate carboxylase [Bacillus megaterium QM B1551]
          Length = 1149

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/240 (12%), Positives = 78/240 (32%), Gaps = 19/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 68  LDI-EGIIDIAKSHDVDAIHPG-YGFLSENIQFAKRCEEEGIIFIGPKSKHLDMFGDKVK 125

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     I       +  +    P +IK   GG   G+ +++   S+ 
Sbjct: 126 ARHQAIQADIPVIPGTDGPIDSIDEAKEFANQHGYPLMIKAALGGGGRGMRIVRDADSLN 185

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   ++GD   +V  +           ++ 
Sbjct: 186 ESYDRAKSEAKAAFGNDEVYVEKLVENPKHIEVQILGDEQGNVVHL-----YERDCSVQR 240

Query: 207 SSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  V P+    + +   +   A    + +        +FL        +++E+N +
Sbjct: 241 RHQKVVEVAPSVSIDEGLRLRICEAAVQLMEKVQYINAGTVEFLV--SGNDFYFIEVNPR 298


>gi|213964778|ref|ZP_03392977.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
 gi|213952314|gb|EEB63697.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium amycolatum SK46]
          Length = 695

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+  ++    +P  L  +     G       +++    T  
Sbjct: 161 APSIGFPVLIKPSAGGGGKGMHRVENAADLPAALATARREAAGAFGDDSLFIEHFVDTPR 220

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         L+          P+ +  +  +      A  A +++G
Sbjct: 221 HIEVQILADKHGNVIHLGERECSLQRRHQKVIEEAPSPLLDEETRSAIGEAACDAARSVG 280

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+         F++E+N +
Sbjct: 281 YVGAGTVEFIVPAKDPSSFFFMEMNTR 307


>gi|323456110|gb|EGB11977.1| hypothetical protein AURANDRAFT_20291 [Aureococcus anophagefferens]
          Length = 1231

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 45/148 (30%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +       P +IK   GG   G+ + +    +      +SS           +++    
Sbjct: 208 YEFAKEAGLPLMIKATMGGGGKGMRIARTLDEVRSQFDAASSEALAGFGDGTCFIERYVE 267

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    +   +  V   +      +             +   + K++Q  A    + 
Sbjct: 268 NPRHVEIQIIGDGDDVVHLWERDCSVQRRHQKVIEMAPAWNLDSALRKKLQDDAVKLGKL 327

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    +FL D  + + F++E+N +
Sbjct: 328 AKYENAGTVEFLVDVANNEHFFIEVNPR 355


>gi|311068003|ref|YP_003972926.1| pyruvate carboxylase [Bacillus atrophaeus 1942]
 gi|310868520|gb|ADP31995.1| pyruvate carboxylase [Bacillus atrophaeus 1942]
          Length = 1149

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 30/239 (12%), Positives = 81/239 (33%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    + D      +G   E+       E   I +         +  DK++
Sbjct: 67  LDI-EGIIEIAKRNQVDAIHPG-YGFLSENIQFAKRCEEEGIVFIGPTSEHLNMFGDKVK 124

Query: 96  SKQVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++     G+PV P       T             P++IK   GG   G+ +++ +  + 
Sbjct: 125 AREQAEKAGIPVIPGSDGPAETLEAVEQFGQAHGYPFIIKASLGGGGRGMRIVRSENEVK 184

Query: 152 LDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
               ++ S     + + +  + +   +   +   V+GD + +V  +            + 
Sbjct: 185 EAFERAKSEAKAAFGNDEVYVEKLIENPKHIEVQVIGDKNGNVVHLYERDCSVQ----RR 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  ++  ++   A    + +        +FL    + + F++E+N +
Sbjct: 241 HQKVIEVAPSVSLSNELRDQICEAAVALAKNVQYINAGTVEFLV--ANDEFFFIEVNPR 297


>gi|302383313|ref|YP_003819136.1| acetyl-CoA carboxylase [Brevundimonas subvibrioides ATCC 15264]
 gi|302193941|gb|ADL01513.1| acetyl-CoA carboxylase, biotin carboxylase [Brevundimonas
           subvibrioides ATCC 15264]
          Length = 450

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 68/217 (31%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I+E   + +         +  DK+ +KQ V   G+P  P    
Sbjct: 77  AIHPGYGFLSENARFAEIVEAHGMTFIGPRPEHIRIMGDKITAKQTVLEAGIPCVPGSPG 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              T++        I  P ++K   GG   G+ V      +   +  + S          
Sbjct: 137 EVETVEDAIAASKSIGFPLIVKASAGGGGRGMKVALTADDLVEAVQTAQSEALAAFGNGA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +  +   V         L+          P+          + 
Sbjct: 197 VYMERYLQKPRHIEIQVIADSHGNVVHLGERDCSLQRRHQKVLEEAPSPALSAAERVAIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A   IG  G+   +FL+     + F++E+N +
Sbjct: 257 ETVNKAIAKIGYLGVGTIEFLW--EDGEFFFIEMNTR 291


>gi|261418223|ref|YP_003251905.1| hypothetical protein GYMC61_0754 [Geobacillus sp. Y412MC61]
 gi|319767817|ref|YP_004133318.1| hypothetical protein GYMC52_2798 [Geobacillus sp. Y412MC52]
 gi|261374680|gb|ACX77423.1| protein of unknown function DUF201 [Geobacillus sp. Y412MC61]
 gi|317112683|gb|ADU95175.1| protein of unknown function DUF201 [Geobacillus sp. Y412MC52]
          Length = 409

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 64/193 (33%), Gaps = 19/193 (9%)

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                      +++         IS P VIKP+    S G+ + +  + + L L      
Sbjct: 124 HFREFLQPAFHIIHHPDEIINLEISFPCVIKPVDDSGSNGVTICQNRRDLELPLRHEWQR 183

Query: 161 NHGDQ-------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              ++        LIE++++G E +  ++             K  +  + ++   +    
Sbjct: 184 QRNERGYELARKWLIEEWIEGQEFSAEMLYTVDGWKLISVTKKETYGPHAVECGHVTGPK 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSI 273
           + P     +  K++  L  L        G +  +F        ++ +E+N +        
Sbjct: 244 LNPFSDLEERCKKLLDLLGL------NYGAAHIEFFV--RGNNLYLVEVNPR---LAGDC 292

Query: 274 FPEMAA-YAGYSF 285
            PE+    AG   
Sbjct: 293 IPELVEFAAGVDM 305


>gi|212694840|ref|ZP_03302968.1| hypothetical protein BACDOR_04374 [Bacteroides dorei DSM 17855]
 gi|319643489|ref|ZP_07998112.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_40A]
 gi|212662593|gb|EEB23167.1| hypothetical protein BACDOR_04374 [Bacteroides dorei DSM 17855]
 gi|317384894|gb|EFV65850.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_40A]
          Length = 389

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A       F+V   +D D ++  V+A  KPD+    +     E         +  +
Sbjct: 39  AMQVADE-----FEVFSMLDGD-ALDAVVAKHKPDIIVPEIEAIRTERLYHLEQEGIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P V+KPL   S
Sbjct: 93  PSARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSLEELREAAREIGFPCVVKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  ++K    +          + GD   +        +             +      
Sbjct: 152 GKGQSLVKSADELEQAWHYGCEGSRGDIKELIIEE---FIQFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +  KE QR+A     A+   GI   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|170756739|ref|YP_001783232.1| biotin carboxylase [Clostridium botulinum B1 str. Okra]
 gi|169121951|gb|ACA45787.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum B1 str. Okra]
          Length = 448

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DGSFYFMEMNTR 292


>gi|158335279|ref|YP_001516451.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acaryochloris
           marina MBIC11017]
 gi|158305520|gb|ABW27137.1| acetyl-CoA carboxylase, biotin carboxylase [Acaryochloris marina
           MBIC11017]
          Length = 449

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 73/217 (33%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHKIHFIGPTPEAMRAMGDKSTAKETMQKAGVPTVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            +  P ++K   GG   G+ ++++ +++    L +            
Sbjct: 138 LVPDEATAKKIADDMGYPVMVKATAGGGGRGMRLVREPENLGKLYLAAQGEAEAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +       +   V         ++          P+     ++ +++ 
Sbjct: 198 VYIEKFIENPRHIEFQIFADSYGNVVHLGERDCSIQRRHQKLLEESPSPALSPELREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A Q+IG  G    +FL    + + +++E+N +
Sbjct: 258 SAAVRAAQSIGYVGAGTVEFLLS-STGEFYFMEMNTR 293


>gi|323497422|ref|ZP_08102440.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sinaloensis
           DSM 21326]
 gi|323317505|gb|EGA70498.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio sinaloensis
           DSM 21326]
          Length = 391

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 77/281 (27%), Gaps = 29/281 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  ++   KPD     +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYENAPAMQVAHRSYVLDMLDGEALERIINDEKPDFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P  ++  L       +  + + +              +  +
Sbjct: 82  EAIATDKLVELESQGLNVVPTANATKLTMNREGIRRLAAEELELTT-SPYRFADNYQDFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V KP+   S  G  VIK ++ I        +   G        V+G    
Sbjct: 141 AAIEAVGIPCVCKPVMSSSGKGQSVIKTNEDIEKA--WDYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S       +P       Q  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQP--QAMPPAALAAAQDAAGKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           G  GI   +         V + E++ +P      +   M+ 
Sbjct: 257 GGYGIFGVELFI--KGDTVIFNEVSPRP--HDTGLVTLMSQ 293


>gi|315046162|ref|XP_003172456.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Arthroderma gypseum CBS 118893]
 gi|311342842|gb|EFR02045.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Arthroderma gypseum CBS 118893]
          Length = 1190

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 85/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 133 SGSQALKALKEAGVRSVLINPNIATIQTDHKLADEVYYLPVTPEYVTYVIEREQPDGIFL 192

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 193 AFGGQTALNLGVQMNRMGIFDRYGVRVLGTSIKTLETSEDRDLFAKALNEINIPIAESIA 252

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG         +    L S S     Q+L+E+
Sbjct: 253 VSTVDDALEAAGKIGYPIIVRSAYALGGLGSGFANNPDELRD--LSSRSLTLAPQILVEK 310

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 311 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 369

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 370 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 421


>gi|295704472|ref|YP_003597547.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           DSM 319]
 gi|294802131|gb|ADF39197.1| putative Phosphoribosylglycinamide synthetase [Bacillus megaterium
           DSM 319]
          Length = 420

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/266 (15%), Positives = 90/266 (33%), Gaps = 10/266 (3%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-- 89
               ID+  +       +K +   N   G          I+  L       G+    +  
Sbjct: 50  NFIPIDLFHTPDKAHEIIKAEHHKNPFDGIMTLYEPALEIVSQLTEELNLPGLSPFVISN 109

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
             +K + ++V+    +       V          +  P V+KP  G SS G+      + 
Sbjct: 110 CRNKQKMREVLKDNDLNTPYFKEVENTEELKNLSLPYPVVVKPSNGFSSQGVSRANNKKE 169

Query: 150 IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD-----FYSYEL 204
           +   + +    N  D     +   G+ +   + G      T     +       +     
Sbjct: 170 LIDSIEKVRRVNEEDLSKFTKNKTGMVIEQFIDGPEFAIETFSVEGEVYVLSIGYKGNSK 229

Query: 205 KYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC-RGISRSDFLFDPLSRKVFWLEIN 263
                   ++ PA++  ++++ + + A  A  A+G   G +  +   +P   K + +EI 
Sbjct: 230 GPFFEEGVYIAPAQLEENVWQSIVQEAARAANALGIENGPAHIELRLNPA-GKPYVIEIG 288

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELL 289
            + G + +S +  +    G ++ EL+
Sbjct: 289 ARIGGSGISHY-IVKESTGINYMELV 313


>gi|293406858|ref|ZP_06650784.1| biotin carboxylase [Escherichia coli FVEC1412]
 gi|291426864|gb|EFE99896.1| biotin carboxylase [Escherichia coli FVEC1412]
          Length = 495

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|237784907|ref|YP_002905612.1| pyruvate carboxylase [Corynebacterium kroppenstedtii DSM 44385]
 gi|237757819|gb|ACR17069.1| pyruvate carboxylase [Corynebacterium kroppenstedtii DSM 44385]
          Length = 1133

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
           +  +  P  +K + GG   G+ +I     +      +S+           +++   +   
Sbjct: 154 ESDMPYPLFVKAVAGGGGRGMRLIPSRDKLRELCETASNEAKTAFGDPTVFLEQAVVNPK 213

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L   +  V         ++        + PA     +  + +   A    + I 
Sbjct: 214 HIEVQILADGQGNVVHLFERDCSVQRRHQKVVELAPAPSLTPEQREAICTDAVNFARHIN 273

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D     V ++E+N +
Sbjct: 274 YRGAGTVEFLVDEDGNHV-FIEMNPR 298


>gi|124514371|gb|EAY55884.1| Acetyl-CoA carboxylase, biotin carboxylase [Leptospirillum rubarum]
          Length = 456

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I +   + +      + +L  DK R+K ++    VPV P    
Sbjct: 82  AIHPGYGFLSENAHFAEICQSAGVVFIGPSPESISLMGDKARAKSLMRETRVPVVPGSQG 141

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P +IK   GG   G+ ++ ++      L  + +         E
Sbjct: 142 AISSEEEAITLSREIGYPLIIKASAGGGGRGMRIVHQEGDFDNALHAAQTEAFQAFGSKE 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  TE  V         ++          P+ +    + +E+ 
Sbjct: 202 VYIEKYFQNPRHVEIQILADTEGNVYALGERDCSIQRRHQKLVEESPSPVLSPKLRQEMS 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A         +FL D      F++E+N +
Sbjct: 262 EAAVRAARAANYVNAGTVEFLVDDRRN-FFFIEMNTR 297


>gi|34398167|gb|AAQ67173.1| CAD [Clinocera sp. NCSU-95051149]
          Length = 1282

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKVQTILINPNIATVQTSKGLADKVYFLPLTLDYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 428 TFGGQTALNCGVELDRAGVFAKYNVKILGTPIQSIIETEDRKIFADRVAEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 488 VYSVAKAIQAAEVLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P+S + F +E+N +  ++  S     +   GY    +  
Sbjct: 605 ALKVIRHFGVVGECNIQYALNPVSEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|83954029|ref|ZP_00962749.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
 gi|83841066|gb|EAP80236.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp.
           NAS-14.1]
          Length = 681

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P ++K   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     +    QA+G 
Sbjct: 209 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQSVALAQAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 TSAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|83942859|ref|ZP_00955319.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp. EE-36]
 gi|83845867|gb|EAP83744.1| propionyl-CoA carboxylase, alpha subunit [Sulfitobacter sp. EE-36]
          Length = 681

 Score = 47.2 bits (110), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/182 (12%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P ++K   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     +    QA+G 
Sbjct: 209 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQSVALAQAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 TSAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|251783205|ref|YP_002997510.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. equisimilis GGS_124]
 gi|242391837|dbj|BAH82296.1| acetyl-CoA carboxylase [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 454

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA   +  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRQEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAKAVA----YENAGTIEFLLDEDSGEFYFMEMNTR 293


>gi|163791238|ref|ZP_02185654.1| acetyl-CoA carboxylase [Carnobacterium sp. AT7]
 gi|159873508|gb|EDP67596.1| acetyl-CoA carboxylase [Carnobacterium sp. AT7]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 85/281 (30%), Gaps = 42/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G K   +    DR  + + LA            D   N              
Sbjct: 17  IIRACREMGIKTVAVYSEADRDALHMQLADEAICIGPAKAADSYLNMQSILSAAVVTNAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + + + + +            +K  ++ ++    VPV P    
Sbjct: 77  AIHPGFGFLSENSTFSTMCQEMNVTFIGPDASTIDQMGNKANARALMIEANVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            I            +  P ++K   GG   G+  +   + +      + +     +    
Sbjct: 137 FITDTNEAKQLADQLGYPVMVKAAAGGGGKGMRKVLSSEELVSAFNSAKNEAKAAFGDDQ 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD   +V  +            K    + +  +      +  
Sbjct: 197 MYMEKIIEHARHIEVQLLGDHYGNVIHLGERDCSLQRNNQKVIEESPSVAI----NEEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++   A  A + +G +     +FL D    + +++E+N +
Sbjct: 253 KKLGETAIRAAKYVGYKNAGTIEFLLD-QDGEFYFMEMNTR 292


>gi|325294099|ref|YP_004279963.1| pyruvate carboxylase [Agrobacterium sp. H13-3]
 gi|325061952|gb|ADY65643.1| pyruvate carboxylase [Agrobacterium sp. H13-3]
          Length = 1153

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  I+K + +  ++ ++           E Y++ +     
Sbjct: 156 AEEIGYPVMLKASWGGGGRGMRAIRKKEDLAREVTEAKREAKAAFGKDEVYLEKLLERAR 215

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         ++  +       PA    +   +E+   +     A  
Sbjct: 216 HVESQVLGDTHGNVVHLFERDCSIQRRNQKVVERAPAPYLSEAQRQELAAYSLKIAAATN 275

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    ++L D  + K +++E+N +
Sbjct: 276 YIGAGTVEYLMDVDTGKFYFIEVNPR 301


>gi|302848034|ref|XP_002955550.1| hypothetical protein VOLCADRAFT_106840 [Volvox carteri f.
           nagariensis]
 gi|300259173|gb|EFJ43403.1| hypothetical protein VOLCADRAFT_106840 [Volvox carteri f.
           nagariensis]
          Length = 2461

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTC 179
              +  P ++K   GG   GI  +  D+ +     Q +    G  +   +       L  
Sbjct: 284 CREVGYPVMLKASWGGGGKGIRKVSSDEEVRSVFKQVAGEVPGSPIFAMKLAPASRHLEV 343

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +V  +            K          P  I  D+ +  +       + +G
Sbjct: 344 QLLCDMHGNVVSLFGRDCSVQRRHQKIVEEGPVTAAPEHILRDMERCAR----ALARLVG 399

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G +  ++L+    +K ++LE+N +
Sbjct: 400 YVGAATVEYLYCIDEQKYYFLELNPR 425


>gi|285017701|ref|YP_003375412.1| phosphoribosylglycinamide formyltransferase 2 protein [Xanthomonas
           albilineans GPE PC73]
 gi|283472919|emb|CBA15424.1| probable phosphoribosylglycinamide formyltransferase 2 protein
           [Xanthomonas albilineans]
          Length = 395

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 35/268 (13%), Positives = 69/268 (25%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D                +D     ++  ++A   P L    +
Sbjct: 24  GKEVAIELQRFGVEVIAVDRYADAPAMQVAHRSHVIDMLDPMALQDLIARECPHLIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +         +  T      +       R               +       
Sbjct: 84  EAIHTETLVALERDHGQRVIPTARAARLTMDREGIRRLAAETLHLPTSPYRFVDTPEQYR 143

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G   ++ +  I        +   G        V+G    
Sbjct: 144 AAIAAVGLPCVVKPVMSSSGKGQSTLRSEADIEAA--WEYAQTGGRAGAGRCIVEG--FI 199

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  +     +  Q +A     A+
Sbjct: 200 DFDYEITLLTVRHAGGTAFCDPIGHWQQDGDYRESWQPQPMSALALQRAQEIAHAVTDAL 259

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +         V++ E++ +P
Sbjct: 260 GGWGLFGVELFV--KGDHVWFSEVSPRP 285


>gi|330965194|gb|EGH65454.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 330

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++Q +   +  +S          E Y++       
Sbjct: 149 ARDIGYPVIVKAAGGGGGRGMRVVQEEQQLLDAIALTSEEARRAFGNPELYIEKFLGQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  I   +   V      A + IG
Sbjct: 209 HVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGIDAALMSRVGERCAQACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G+   +FLF   + + +++E+N +
Sbjct: 269 YQGVGTFEFLF--ENDEFYFIEMNTR 292


>gi|326797457|ref|YP_004315276.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobacterium sp.
           21]
 gi|326548221|gb|ADZ76606.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobacterium sp.
           21]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P ++K   GG   G+ V+ KD         +       + +    L +   D  
Sbjct: 148 ANEIGYPVILKATAGGGGRGMRVVWKDSEFEPAWDSARQEAGAAFGNDGIYLEKFVEDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD    V  ++           +             I  ++ +++   A    
Sbjct: 208 HIEIQVIGDQYGTVCHLSERDCSIQ----RRHQKLVEEAPSPFITPELRQKMGDAAIAGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D      +++E+N +
Sbjct: 264 KAVKYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|323127932|gb|ADX25229.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           dysgalactiae subsp. equisimilis ATCC 12394]
          Length = 454

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 76/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARTEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA   +  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGTIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRQEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAKAVA----YENAGTIEFLLDEDSGEFYFMEMNTR 293


>gi|317472051|ref|ZP_07931383.1| acetyl-CoA carboxylase [Anaerostipes sp. 3_2_56FAA]
 gi|316900455|gb|EFV22437.1| acetyl-CoA carboxylase [Anaerostipes sp. 3_2_56FAA]
          Length = 460

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 67/217 (30%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +            DK  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVRMCEKCNISFIGPSAEIIDKMGDKSSARKTMMEAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        +   +  P +IK   GG   G+ + +           +            
Sbjct: 137 AVYEALEGRKTADEMGYPVMIKASAGGGGKGMRICEDSAEFEHIFETAKREAENAFGDGT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++          P+  I  ++ +++ 
Sbjct: 197 MYIEKYIRDPRHIEFQILADKYGNVVHLGERDCSIQRRHQKLIEESPSPAINKELREKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A G       +FL D      +++E+N +
Sbjct: 257 AIAVKAAKAAGYYSAGTIEFLKD-QDGNFYFIEMNTR 292


>gi|310657335|ref|YP_003935056.1| pyruvate carboxylase [Clostridium sticklandii DSM 519]
 gi|308824113|emb|CBH20151.1| pyruvate carboxylase [Clostridium sticklandii]
          Length = 1144

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 87/281 (30%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 A ++ G +   I                   V ++ G V A+L  D        
Sbjct: 16  AIRVFRACKELGIRSVAIYSNEDRTSLFRTKADESYLVGKNKGPVEAYLGIDEIIGLALK 75

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+           I +            DK++SK V  +  VP  P
Sbjct: 76  KGVDAIHPGYGFLSENAEFARKCAEAGIVFIGPTGDMIDNLGDKIKSKIVAKNANVPTIP 135

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +     + +     +     P +IK   GG   G+ ++ K++ +      + S      
Sbjct: 136 GVEKPIKSDEEAKEFAAFCGYPVMIKAAAGGGGRGMRIVTKEEELLEAFHSAQSEAKKAF 195

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            + + +++        +    L  T   +         ++          PA        
Sbjct: 196 GIDDIFIEKYLEKPKHIEVQILGDTHGNIVHLYERDCSIQRRHQKLIEFTPAVSLTQKKR 255

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++ + A    +A+        +FL D  +   +++E+N +
Sbjct: 256 EQICQDALKIAKAVDYCNAGTVEFLVD-KNGNHYFIEMNPR 295


>gi|296388622|ref|ZP_06878097.1| 'geranyl-CoA carboxylase, alpha-subunit (biotin-containing)'
           [Pseudomonas aeruginosa PAb1]
          Length = 661

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++       
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVEEPGQLLEQLRTARSEALGAFGSAELILERAVPRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|171778065|ref|ZP_02919322.1| hypothetical protein STRINF_00157 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283047|gb|EDT48471.1| hypothetical protein STRINF_00157 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 456

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 91/281 (32%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G     +    D++ +  +LA            D   N              
Sbjct: 17  IIRAARELGINTVAVYSEADKNSLHTILADEAICIGPARSTDSYLNMNAVLSAAVVTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    +  P ++K   GG   GI  ++  Q +      +S      + +G 
Sbjct: 137 EVFTAEQALEVAEKLGYPVMLKASAGGGGKGIRKVESAQDLVPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  +V  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVVYPARHIEVQILGDSYGNVVHLGERDCSLQRNNQKVLEESPSIAIGKTLRGKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +A+G       +FL D  + + +++E+N +
Sbjct: 257 D----AAVRAAKAVGYENAGTIEFLLDEKTSQFYFMEMNTR 293


>gi|15833382|ref|NP_312155.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|168752554|ref|ZP_02777576.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4113]
 gi|168758930|ref|ZP_02783937.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4401]
 gi|168769116|ref|ZP_02794123.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4486]
 gi|168783823|ref|ZP_02808830.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4076]
 gi|195939999|ref|ZP_03085381.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. EC4024]
 gi|208809706|ref|ZP_03252043.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208814516|ref|ZP_03255845.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208820087|ref|ZP_03260407.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209396842|ref|YP_002272718.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4115]
 gi|217327855|ref|ZP_03443938.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254795199|ref|YP_003080036.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. TW14359]
 gi|261228261|ref|ZP_05942542.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. FRIK2000]
 gi|261255117|ref|ZP_05947650.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. FRIK966]
 gi|20137346|sp|Q8X9B6|ACCC_ECO57 RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|13363601|dbj|BAB37551.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. Sakai]
 gi|188013628|gb|EDU51750.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4113]
 gi|188998891|gb|EDU67877.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4076]
 gi|189354350|gb|EDU72769.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4401]
 gi|189361749|gb|EDU80168.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4486]
 gi|208729507|gb|EDZ79108.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4206]
 gi|208735793|gb|EDZ84480.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4045]
 gi|208740210|gb|EDZ87892.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4042]
 gi|209158242|gb|ACI35675.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. EC4115]
 gi|209757580|gb|ACI77102.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757582|gb|ACI77103.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757586|gb|ACI77105.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|217320222|gb|EEC28647.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           O157:H7 str. TW14588]
 gi|254594599|gb|ACT73960.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O157:H7 str. TW14359]
 gi|320189603|gb|EFW64262.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. EC1212]
 gi|320640048|gb|EFX09629.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. G5101]
 gi|326337951|gb|EGD61785.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. 1125]
 gi|326347520|gb|EGD71245.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           O157:H7 str. 1044]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNSIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|321260100|ref|XP_003194770.1| acetyl-CoA carboxylase [Cryptococcus gattii WM276]
 gi|317461242|gb|ADV22983.1| Acetyl-CoA carboxylase, putative [Cryptococcus gattii WM276]
          Length = 2237

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 20/157 (12%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++    I  P +IK  +GG   GI  ++  +         +    G  + I 
Sbjct: 222 CVHNWEEGLERAEKIGFPVMIKASEGGGGKGIRKVEDGEKFKNAFQAVAGEVPGSPIFIM 281

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +       L   ++ D   +   +            +                D ++E++
Sbjct: 282 KLAGSARHLEVQLIADQYGNAISLFGRDCSVQ----RRHQKIIEEAPVTIAKPDTFEEME 337

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A    + +G       ++L+       ++LE+N +
Sbjct: 338 KAAVRLAKLVGYVSAGTVEYLYSHSDDSFYFLELNPR 374


>gi|319646136|ref|ZP_08000366.1| PycA protein [Bacillus sp. BT1B_CT2]
 gi|317391886|gb|EFV72683.1| PycA protein [Bacillus sp. BT1B_CT2]
          Length = 1147

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 81/244 (33%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 60  KPIDAYLDIEGIIEIAKRNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPTSEHLDMF 118

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+++++     G+PV P     +               P++IK   GG   G+ +++ 
Sbjct: 119 GDKVKAREQAEKAGIPVIPGSDGPVADIAEVKQFAEKFGYPFIIKASLGGGGRGMRIVRD 178

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  +     ++ S     + + +  + +       +   V+GD   +V  +         
Sbjct: 179 ESELEESYNRAKSEAKAAFGNDEVYVEKLIEKPKHIEVQVIGDKEGNVVHLYDRDCSVQ- 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +   + +++   A    + +        +FL    + + F++E
Sbjct: 238 ---RRHQKVIEVAPSVSLSESLREKICDAAVKLAKNVEYVNAGTVEFLV--ANDEFFFIE 292

Query: 262 INVQ 265
           +N +
Sbjct: 293 VNPR 296


>gi|241204798|ref|YP_002975894.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
 gi|240858688|gb|ACS56355.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM1325]
          Length = 673

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 33/285 (11%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVL--------HGNFGEDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K   A   +        +G   E     A LE   I +    
Sbjct: 47  EAVHIGPAAASESYLVAEKIIAACKAIGAEAVHPGYGFLSERASFCAELEKQGIIFIGPK 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             A     DK+ SK+  ++ GV   P  L          +IS     P +IK   GG   
Sbjct: 107 PKAIMAMGDKIESKKFANAAGVSTVPGHLGIIEDGAHAEVISGGIGYPVMIKASAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +   +  +     ++ S           +++   +    +    L      V     
Sbjct: 167 GMRIAWNEAEVRDGFERARSEAKSSFGDDRVFIEKFVVEPRHIEIQVLADAHGNVVYLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+    +  ++     +    +A+  +     +F+ D   R  +
Sbjct: 227 RECSIQRRNQKVAEEAPSPFLDEATRKAMGEQSVALARAVDYQSAGTVEFIVD-RDRNFY 285

Query: 259 WLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
           +LE+N +              +       G    +L+  M+  A+
Sbjct: 286 FLEMNTR----------LQVEHPVTELITGI---DLVEQMIRVAA 317


>gi|110590389|pdb|2GPW|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590390|pdb|2GPW|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590391|pdb|2GPW|C Chain C, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590392|pdb|2GPW|D Chain D, Crystal Structure Of The Biotin Carboxylase Subunit, F363a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 469

 Score = 46.8 bits (109), Expect = 0.003,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 34  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 93

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 94  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 153

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 154 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 213

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 214 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 269

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 270 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 312


>gi|332998376|gb|EGK17975.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri VA-6]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVQSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|159905216|ref|YP_001548878.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C6]
 gi|159886709|gb|ABX01646.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C6]
          Length = 388

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  V+   KPDL    +     +            +P  ++  L   
Sbjct: 52  HRFHVIDMKDGGALRAVIEREKPDLIVPEIEAINTDTLKELETEGYHVVPTANATKLTMD 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + + +                  ++   I  P VIKP+   S  G   IK + 
Sbjct: 112 REGIRRIAFEKLGLRT-AKYEFAENLEELKEAVQRIGIPCVIKPIMSSSGKGQSTIKSES 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + +   G          G ++          ++T +    ++   +      
Sbjct: 171 DIEKSWDYAKNAARG---------IGTKVIVEEFIKFDYEITLLTARTAEGTRFCEPIGH 221

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 222 IQIDGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|89889699|ref|ZP_01201210.1| acetyl-CoA carboxylase biotin carboxylase [Flavobacteria bacterium
           BBFL7]
 gi|89517972|gb|EAS20628.1| acetyl-CoA carboxylase biotin carboxylase [Flavobacteria bacterium
           BBFL7]
          Length = 448

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 79/252 (31%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I    +I +  +
Sbjct: 47  EAVCIGPAPSNLSYLKVSNIISAAEITNADAIHPG-YGFLSENADFSRICGEHDIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                A   DK  +K+ + + GVP  P     I               P ++K   GG  
Sbjct: 106 SPDMIAKMGDKATAKETMKAAGVPCVPGSDGIIADFDDCKKIALETGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K++ +      +       + + D  + +   +   +   V+GD+      ++
Sbjct: 166 KGMRAVWKEEDLLAAWESARQESKAAFGNDDMYMEKLIEEPRHIEIQVVGDSYGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +  V    +   + KE+   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEEVPSPFMTKKLRKEMGEAAVKAAEFIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|300932556|ref|ZP_07147812.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium resistens DSM
           45100]
          Length = 706

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+  +++   +P  L  +             +++    T  
Sbjct: 149 APDIGFPVLIKPSAGGGGKGMHRVEEIDKLPAALKSARREAASSFGDDTLFMEHFVDTPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +   V         L+          P+ +  +  +    + A  A +A G
Sbjct: 209 HIEVQIVADSHGNVVHLGERECSLQRRHQKVIEEAPSALLDEKTRAEIGQAACDAARACG 268

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       K F++E+N +
Sbjct: 269 YLGAGTVEFIVSAKQPEKFFFMEMNTR 295


>gi|220904820|ref|YP_002480132.1| pyruvate carboxylase [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219869119|gb|ACL49454.1| Carbamoyl-phosphate synthase L chain ATP-binding [Desulfovibrio
           desulfuricans subsp. desulfuricans str. ATCC 27774]
          Length = 1233

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   GI  I  +  +     ++S+           +V+        +
Sbjct: 161 EIGLPIMLKAEGGGGGRGIFAIHNEAELEDAFFKASTMAQASFGNPRLFVEKFLADVRHI 220

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIG 239
               +      V   D     ++ +      + P+  P    ++ + ++  +    +A+G
Sbjct: 221 EIQVIADMYGNVFAFDERDCTVQRNHQKLIEITPSPWPGMTRNLRERLKDYSRRLVRAVG 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++  +FL  P     + +E+N +
Sbjct: 281 YHSLATVEFLVTP-DGTPYLIEVNTR 305


>gi|118498080|ref|YP_899130.1| hypothetical protein FTN_1511 [Francisella tularensis subsp.
           novicida U112]
 gi|194323305|ref|ZP_03057089.1| hypothetical protein FTE_0895 [Francisella tularensis subsp.
           novicida FTE]
 gi|118423986|gb|ABK90376.1| conserved hypothetical protein [Francisella novicida U112]
 gi|194322669|gb|EDX20149.1| hypothetical protein FTE_0895 [Francisella tularensis subsp.
           novicida FTE]
          Length = 407

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/236 (17%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + IDV +     L  L  D           ED +  A   + +I    + I  S    +K
Sbjct: 67  TAIDVTK-----LTQLNIDYVI-----CGYEDSVAIADYLMQQITNYSNDITTSEYRNNK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
               QV+ +  +      ++N   + S H  + P  IKPL G +S+G  ++     +   
Sbjct: 117 YLMHQVLKNNQLNYLKQEIINFKNIKSSH-FNYPCFIKPLNGSASVGAAILNSQAELVDY 175

Query: 154 LLQSSSWNHGDQL---LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           + +      G      +I +Y+ G+E   G                     Y +      
Sbjct: 176 IKKDFYSPVGRNYSEFIISEYIKGVEYAVGTFSKDGEHYVSSVQKYVTKIHYGVPVILSF 235

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQ 265
                      +I  +V   A +    +G R G + ++      +     +E+N +
Sbjct: 236 ELEN-----NKEIIAKVTEYAKIVLTKLGIRNGFAHTEIFLTAENN-PVLIEVNPR 285


>gi|283470883|emb|CAQ50094.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus aureus subsp. aureus ST398]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|260584658|ref|ZP_05852404.1| pyruvate carboxylase [Granulicatella elegans ATCC 700633]
 gi|260157681|gb|EEW92751.1| pyruvate carboxylase [Granulicatella elegans ATCC 700633]
          Length = 1142

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 74/235 (31%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+D  +  +      D      +G   E+       +   + +    +    +  DK++
Sbjct: 61  LDMD-DIIRIAKRSGADAVHPG-YGFLSENIDFARKCQDAGLTFVGPRLEHLDILGDKLK 118

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K      G+   P     +   +   D       P +IK   GG   G+ V+ + + + 
Sbjct: 119 AKNAAHKAGLQSIPGTEGTVSSVQEIYDFGEQFGYPIMIKAALGGGGRGMRVVYRKEDVQ 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++           E YV+        +    L      V         ++      
Sbjct: 179 DSYDRAVGEAIKAFGAGECYVEKYIENPQHIEVQILGDEHGNVVHLFERDCSVQRRHQKV 238

Query: 212 THVLPAKIPLDIYK-EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P     +  + ++   A    + IG       +FL D    + +++E+N +
Sbjct: 239 IEVAPCVSLSEEMRSKICNAAASFMKEIGYVNAGTVEFLLD--GNQFYFIEVNPR 291


>gi|256380220|ref|YP_003103880.1| carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
 gi|255924523|gb|ACU40034.1| Carbamoyl-phosphate synthase L chain ATP- binding [Actinosynnema
           mirum DSM 43827]
          Length = 643

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ ++++   +   +  +              V+       
Sbjct: 150 ATEIGFPVLVKPSAGGGGKGMRLVREAAGLREAVESARREARASFGDDALLVERYVSDPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                L+          P+ +   D  + + R A LA +++G
Sbjct: 210 HIEIQVLADAHGTTVHLGERECSLQRRHQKVIEEAPSPLLDADAREAMGRSAVLAAESVG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+ D  + + F+LE+N +
Sbjct: 270 YVGAGTVEFIVDGTTGEHFFLEMNTR 295


>gi|282906013|ref|ZP_06313868.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283958367|ref|ZP_06375818.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|297590850|ref|ZP_06949488.1| biotin acetyl-CoA carboxylase subunit A [Staphylococcus aureus
           subsp. aureus MN8]
 gi|282331305|gb|EFB60819.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           Btn1260]
 gi|283790516|gb|EFC29333.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus A017934/97]
 gi|297575736|gb|EFH94452.1| biotin acetyl-CoA carboxylase subunit A [Staphylococcus aureus
           subsp. aureus MN8]
 gi|315195506|gb|EFU25893.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus CGS00]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|205355794|ref|ZP_03222563.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8421]
 gi|205346228|gb|EDZ32862.1| putative pyruvate carboxylase A subunit [Campylobacter jejuni
           subsp. jejuni CG8421]
          Length = 465

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/240 (15%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +DV R +  +      D      +G   E+       E   I +            +K  
Sbjct: 62  LDVAR-IVEIAKACGADAIHPG-YGFLSENYEFAKACEDAGIIFIGPKSEVIHKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSI-----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++++++  G+P+ P                   I  P ++K   GG   GI V+ K+Q +
Sbjct: 120 ARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILKASGGGGGRGIRVVHKEQDL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   ++GD   ++  +            +
Sbjct: 180 ENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+G       +FL D    + +++E+N +
Sbjct: 236 RHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|123968626|ref|YP_001009484.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. AS9601]
 gi|171769721|sp|A2BRG6|PURT_PROMS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123198736|gb|ABM70377.1| GAR transformylase 2 [Prochlorococcus marinus str. AS9601]
          Length = 391

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/265 (12%), Positives = 73/265 (27%), Gaps = 29/265 (10%)

Query: 27  EDAGFKVSQID-------------------VDRSVGL-VLAHLKPDLAFNVLHGNFGEDG 66
           +  G +V  ID                    D+++   V+   KPD     +     E  
Sbjct: 28  KRLGLEVIAIDRYEKAPAMQVADYSRVIEMGDKNILKNVIKEFKPDYVVPEIEALSIEAL 87

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISP 126
                     +P   +  +       +  + + +          I            I  
Sbjct: 88  KELEDEGFNIVPNARTVEITMNRDKIRDLASKDLKIKT-AKFDYIFEFDDLEKKADEIGF 146

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P ++KPL   S  G  +++    +     Q+ + + G    +        +         
Sbjct: 147 PLLLKPLMSSSGKGQSLVETKNDLQNAWKQAQANSRGKVKGVIIEE---FINFDFEFTLL 203

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
               E            L+ +        P +I   +  E +R+       +   G+   
Sbjct: 204 TVRKENGENIFCLPIGHLQSNGDYQCSWQPLEIKESLIIEAKRMTSRILNNLNGAGLYGV 263

Query: 247 DFLFDPLSRKVFWLEINVQP---GM 268
           +F       +V + E++ +P   GM
Sbjct: 264 EFFI--KGSEVIFSELSPRPHDTGM 286


>gi|295095554|emb|CBK84644.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter cloacae
           subsp. cloacae NCTC 9394]
          Length = 392

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/273 (13%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  ++A  KPD     +
Sbjct: 24  GKEVAIECQRLGVEVIAVDRYANAPAMHVAHRSHVIDMLDGNALRGLIADEKPDFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  +         +P   +  L       +  + + +                 +
Sbjct: 84  EAIATEMLIALEQEGQRVVPCATAAKLTMNREGIRRLAAEELQLPT-SSYRFAGDKAAFL 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G   I+   ++        +   G        V+G+   
Sbjct: 143 QAVEEIGYPCIIKPVMSSSGKGQSFIRDSSTLDNA--WDYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P ++        Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVYFCDPIGHRQEDG--DYRESWQPQQMSALALARAQEIARKTVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|268680814|ref|YP_003305245.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurospirillum
           deleyianum DSM 6946]
 gi|268618845|gb|ACZ13210.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurospirillum
           deleyianum DSM 6946]
          Length = 443

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/250 (17%), Positives = 85/250 (34%), Gaps = 14/250 (5%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D  F   +G   E+     + +   I +    + +  L  DK ++K+V+   GVPV    
Sbjct: 77  DAIFPG-YGFLSENQTFVEVCQHHNIKFIGPSVDSMVLMSDKSKAKEVMKKAGVPVILGS 135

Query: 112 LVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                 +         I  P ++K   GG   G+ V++K + +    L + S        
Sbjct: 136 DGALKDVAQAKELATQIGLPVIVKASAGGGGRGMRVVEKMEDLEKSYLAAESEAISAFGD 195

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    +  +   V         ++          PA          
Sbjct: 196 GTLYMEKYIKNPRHIEVQVIGDSFGNVVHIGERDCSMQRRHQKLIEESPAIALDDKTRTR 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  +A  A + IG       +FL D      +++E+N +  +       EM   +G    
Sbjct: 256 LHEVAVKATKYIGYENAGTFEFLLDADKN-FYFMEMNTR--LQVEHCVSEM--VSGI--- 307

Query: 287 ELLLWMVEDA 296
           +++ WM+  A
Sbjct: 308 DIIEWMIRVA 317


>gi|326200874|ref|ZP_08190746.1| Carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           papyrosolvens DSM 2782]
 gi|325988442|gb|EGD49266.1| Carbamoyl-phosphate synthase L chain ATP-binding [Clostridium
           papyrosolvens DSM 2782]
          Length = 513

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/233 (14%), Positives = 73/233 (31%), Gaps = 9/233 (3%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D+ +  +    K D      +G   E       ++   + +         L  +K  ++
Sbjct: 63  IDK-IIKIAIEAKVDAIHPG-YGFLSEKEEFAKAVKEAGLIFIGPSAQVIKLLGNKFEAR 120

Query: 98  QVVSSCGVPVCPSILVNRFT----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            V     +P+ P +           D    I  P +IKP  GG   G+ +      +   
Sbjct: 121 TVAERLSIPLVPGVNRAINNVAEAEDIASSIGYPVMIKPAAGGGGKGMYIANSKDELKDT 180

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             +S S           +++        +    L  +   V         ++        
Sbjct: 181 FFKSQSVAESLFHNDSVFIERYYTDVHHVEVQLLADSHGNVVHLGERECSIQRRFQKIVE 240

Query: 214 VLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P   I  ++  ++   A    + +        +FL+   + +VF+LE+N +
Sbjct: 241 EAPCLTISQELKDKIFEYAISIAKEVQYTSAGTVEFLY--SNGEVFFLELNTR 291


>gi|258652381|ref|YP_003201537.1| carbamoyl-phosphate synthase L chain ATP- binding [Nakamurella
           multipartita DSM 44233]
 gi|258555606|gb|ACV78548.1| Carbamoyl-phosphate synthase L chain ATP- binding [Nakamurella
           multipartita DSM 44233]
          Length = 1831

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/233 (17%), Positives = 81/233 (34%), Gaps = 14/233 (6%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   L   K D A+ V  G   ED     + E L + +      A     DK+ +K +  
Sbjct: 73  LRKALIESKADAAW-VGWGFVAEDPTFAELCEELGVTFIGPPPEAMRRLGDKVEAKYMAE 131

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           +  VPV P     +      ++    I  P ++K   GG   GI ++     +   + ++
Sbjct: 132 ATNVPVAPWSGGPVETMEEALEHAKSIGYPMILKARSGGGGRGIRMVFDPAELEEAIERT 191

Query: 158 S---SWNHGDQLLIEQY--VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                    D ++  ++    G  +   V+ D   +     V          + +     
Sbjct: 192 QSEAQKAFNDHVIFMEHLVQGGRHIEVQVIADNYGNAWAPGVRDCSIQ----RRNQKLIE 247

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 +  +   ++   A     A+G RG    +FL+ P  +   +LE+N +
Sbjct: 248 ESFSPALTKEQAADLAARAIDLVLAVGYRGAGTVEFLYQPEKKTFAFLEVNTR 300


>gi|282911243|ref|ZP_06319045.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|282324938|gb|EFB55248.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WBG10049]
 gi|312437926|gb|ADQ76997.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus TCH60]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEAYALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|194245478|gb|ACF35348.1| carbamoylphosphate synthetase [Sialis sp. ALW-2008]
          Length = 670

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 70  SGSQAIKALKEENIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIKSERPGGVLL 129

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +   + + E        + I +   + D+      ++     V    +
Sbjct: 130 TFGGQTALNCGIELEQENVFEKYNCKILGTPISSIIETEDRKIFADRINEIGEKVAPSAA 189

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  ++  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 190 VYSVEEALKAAEMLGYPVMARAAFSLGGLGSGFANTKEELVN--LAHQALAHSNQLIIDK 247

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 248 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSDREYNMLRTT 306

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S   + +E+N +  ++  S     +   GY    +  
Sbjct: 307 AIKVIKHFGVVGECNIQYALNPNSEDYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 362

Query: 291 WM 292
            +
Sbjct: 363 KL 364


>gi|167748413|ref|ZP_02420540.1| hypothetical protein ANACAC_03157 [Anaerostipes caccae DSM 14662]
 gi|167652405|gb|EDR96534.1| hypothetical protein ANACAC_03157 [Anaerostipes caccae DSM 14662]
          Length = 460

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 67/217 (30%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +            DK  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFVRMCEKCNISFIGPSAEIIDKMGDKSSARKTMMEAGVPVVPGTKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +        +   +  P +IK   GG   G+ + +           +            
Sbjct: 137 AVYEALEGRKTADEMGYPVMIKASAGGGGKGMRICEDSAEFEHIFETAKREAENAFGDGT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++          P+  I  ++ +++ 
Sbjct: 197 MYIEKYIRDPRHIEFQILADKYGNVVHLGERDCSIQRRHQKLIEESPSPAINKELREKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A G       +FL D      +++E+N +
Sbjct: 257 AIAVKAAKAAGYYSAGTIEFLKD-QDGNFYFIEMNTR 292


>gi|187251441|ref|YP_001875923.1| carbamoyl-phosphate synthase, large subunit [Elusimicrobium minutum
           Pei191]
 gi|186971601|gb|ACC98586.1| Carbamoyl-phosphate synthase, large subunit [Elusimicrobium minutum
           Pei191]
          Length = 1102

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/297 (14%), Positives = 96/297 (32%), Gaps = 36/297 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     ALE+ G +V  ++ +                       +  ++   +P +A  
Sbjct: 36  SGSQAIKALEEEGLEVIVLNPNIASVQTNPAPNKKIYLYPVTPFWIEKIIKKERP-VALI 94

Query: 57  VLHGN-----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
              G         +     +L+   +    + + +  +S D+    + +   GVP  PS 
Sbjct: 95  AGFGGQTSLNCAIELHNNGVLKKYGVKVLGTPVSSLEMSEDRDLFSKRMHEIGVPTPPSK 154

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      + +   I  P + +       LG  + +  + +    L SS+     Q+LIE
Sbjct: 155 AVETVEEALKTALEIGYPVITRSAYALGGLGSGLAENPEQLEK--LASSALTSSPQILIE 212

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G +     +   +   +       +F    +                 +    ++ 
Sbjct: 213 KSLHGWKEIEYEVMRDACGNSITICNMENFDPMGIHTGDSIVIAPCQTLNNRE-NNMLRD 271

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            A    ++IG  G     F   P + + + +EIN +  ++  S     +   GY   
Sbjct: 272 AALNIVKSIGVVGECNVQFALSPFTLEYYVIEINAR--LSRSS--ALASKATGYPIA 324


>gi|26988190|ref|NP_743615.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           KT2440]
 gi|81586360|sp|Q88MW1|PURT_PSEPK RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|24982927|gb|AAN67079.1|AE016337_2 phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           KT2440]
 gi|313500318|gb|ADR61684.1| PurT [Pseudomonas putida BIRD-1]
          Length = 393

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVNMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFTVVPTARATQLTMNREGIRRLAAEELDLPT-SPYHFADTYEDYA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++ D  +        +   G        V+G    
Sbjct: 143 KAVADLGYPCVVKPVMSSSGKGQSLLRSDADLQK--SWDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFEYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMSPKALAESQRVAKAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|49483851|ref|YP_041075.1| biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|295428183|ref|ZP_06820815.1| biotin carboxylase subunit [Staphylococcus aureus subsp. aureus
           EMRSA16]
 gi|49241980|emb|CAG40677.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus MRSA252]
 gi|295128541|gb|EFG58175.1| biotin carboxylase subunit [Staphylococcus aureus subsp. aureus
           EMRSA16]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANTLDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|70996328|ref|XP_752919.1| urea amidolyase [Aspergillus fumigatus Af293]
 gi|66850554|gb|EAL90881.1| urea amidolyase, putative [Aspergillus fumigatus Af293]
 gi|159131673|gb|EDP56786.1| urea amidolyase, putative [Aspergillus fumigatus A1163]
          Length = 1168

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/193 (11%), Positives = 54/193 (27%), Gaps = 18/193 (9%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      ++    +  P ++K   GG  +G++    D  +        S           
Sbjct: 70  INNEHDAVEVAQKLGYPVMLKATAGGGGMGLLTCNSDAEVRKSFATVKSRGEALFKNAGV 129

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEV 227
           +++        +        +            ++          P+        + K +
Sbjct: 130 FIERYYPASHHIEVQVFGNGDGKAIFIGERECSIQRRHQKVIEECPSPFVSRKPGLRKSL 189

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS--- 284
              A    ++I        ++L D  +   F+LE+N             +    G +   
Sbjct: 190 GEAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT-----------RLQVEHGITELC 238

Query: 285 FR-ELLLWMVEDA 296
           +  +L+  M+  A
Sbjct: 239 YGLDLVELMLNQA 251


>gi|254038419|ref|ZP_04872477.1| acetyl CoA carboxylase [Escherichia sp. 1_1_43]
 gi|226840043|gb|EEH72064.1| acetyl CoA carboxylase [Escherichia sp. 1_1_43]
          Length = 462

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 27  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 86

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 87  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 146

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 147 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 207 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 262

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 263 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 305


>gi|254375109|ref|ZP_04990589.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           GA99-3548]
 gi|151572827|gb|EDN38481.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           GA99-3548]
          Length = 386

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWGYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMSDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|254252706|ref|ZP_04946024.1| Carbamoyl-phosphate synthase [Burkholderia dolosa AUO158]
 gi|124895315|gb|EAY69195.1| Carbamoyl-phosphate synthase [Burkholderia dolosa AUO158]
          Length = 1014

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/301 (11%), Positives = 92/301 (30%), Gaps = 38/301 (12%)

Query: 22  CASAL--EDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVL 58
             +AL   + G++   +         D D              V  ++   KP       
Sbjct: 514 VHAALAMREDGYETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVDKEKPVGVIVQY 573

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +      + I  T   ++ +A   ++ +          P   +       +
Sbjct: 574 GGQTPLKLALDLEAHGVPIIGTSPDMIDAAEDRERFQKLLQDLGLRQPPNRTARNEEEAL 633

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIEL 177
           +    I  P V++P        + ++ + + +   + ++   ++   +L++++  D IE 
Sbjct: 634 ELAAEIGYPLVVRPSYVLGGRAMEIVHEPRDLERYMREAVKVSNDSPVLLDRFLNDAIEC 693

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               + D         +   +       +S  ++  + P  +  +   E++R      +A
Sbjct: 694 DVDCICDGDAVFIGGVMEHIEQAG---VHSGDSACSLPPYSLSKETVGELKRQTAAMAKA 750

Query: 238 IGCRGISRSDFLFDP-------LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +   G+    F               ++ LE+N +   T     P ++        ++  
Sbjct: 751 LNVVGLMNVQFAIQQVPQADGSKQDVIYVLEVNPRASRT----VPYVSKATSLPLAKIAA 806

Query: 291 W 291
            
Sbjct: 807 R 807


>gi|170727565|ref|YP_001761591.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
           ATCC 51908]
 gi|169812912|gb|ACA87496.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella woodyi
           ATCC 51908]
          Length = 709

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+ +++ +  +   +  +       + +   L+        
Sbjct: 163 AKKMGFPLLIKAAFGGGGKGMRIVENETEVLDAIHSARREAISSFGNDKLLMERYLRQPR 222

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   ++           +             +  ++  ++   A  A 
Sbjct: 223 HVEVQVFADNHGNCIYLSDRDCSIQ----RRHQKVVEEAPAPGLSDELRVKMGEAAVAAA 278

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI  +G    +FL D      +++E+N +
Sbjct: 279 KAIDYQGAGTVEFLLDT-DNSFYFMEMNTR 307


>gi|26110266|gb|AAN82452.1|AE016767_212 Biotin carboxylase [Escherichia coli CFT073]
          Length = 462

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 27  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 86

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 87  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 146

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 147 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 207 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 262

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 263 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 305


>gi|319947606|ref|ZP_08021836.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus australis
           ATCC 700641]
 gi|319746294|gb|EFV98557.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus australis
           ATCC 700641]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 89/281 (31%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G +   +    D+     L   +          D   N              
Sbjct: 17  IIRAARELGIETVAVYSTADKEALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGSE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGSVMDMMGDKINARAQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    I  P ++K   GG   GI  +++ + +      +S+     + +G 
Sbjct: 137 EVHTAEEALEVADRIGYPVMLKASAGGGGKGIRKVERAEDLVPAFESASTEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +       I 
Sbjct: 197 MYLERVIYPARHIEVQILADQFGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTIR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   A  A +++G       +FL+D    + +++E+N +
Sbjct: 253 DQIGSAAVRAAESVGYENAGTIEFLYDEGKGEFYFMEMNTR 293


>gi|317140322|ref|XP_001818122.2| urea carboxylase [Aspergillus oryzae RIB40]
          Length = 1237

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 78/271 (28%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + LA      A    +G   E+      +    + +             K  +
Sbjct: 61  YIDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +  
Sbjct: 121 RDLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++    +   +        +            ++       
Sbjct: 181 SFATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQKII 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+        + + +   A    ++I        ++L D  +   F+LE+N      
Sbjct: 241 EECPSPFVTRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M++ A
Sbjct: 296 ------RLQVEHGITELCYGVDLVELMLKQA 320


>gi|255009219|ref|ZP_05281345.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
 gi|313146967|ref|ZP_07809160.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
 gi|313135734|gb|EFR53094.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           3_1_12]
          Length = 388

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/255 (14%), Positives = 77/255 (30%), Gaps = 17/255 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
               A       ++V  +     +  ++   +PD+    +      + L     E +++ 
Sbjct: 38  AMQVADE-----YEVFDMLNGEELERIVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVV 91

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +  +                               ++   I  P V+KPL   S 
Sbjct: 92  PSARAVNYTMNRKAIRDLAAKELGLKTAKYYYAKSLEELKEAAAKIGFPCVVKPLMSSSG 151

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G  ++K    +        S + GD  +L+IE+++        +        T    P 
Sbjct: 152 KGQSLVKSAAELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPI 211

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                      S    H+ PA +           A    +A+   G+   +F     +  
Sbjct: 212 GHVQKGGDYRESFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLSHENG- 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|288941393|ref|YP_003443633.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
 gi|288896765|gb|ADC62601.1| acetyl-CoA carboxylase, biotin carboxylase [Allochromatium vinosum
           DSM 180]
          Length = 472

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   GI       ++  +  +  S         E +++   +  
Sbjct: 146 CAAEIGYPVMLKATSGGGGRGIRRCDDPAALRHNYERVISEATKAFGRAEVFLEKCVVNP 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L                ++  +     + P+    D   + V  LA LA +++
Sbjct: 206 KHIEVQVLADHHGHCIHLFERDCSIQRRNQKLIEIAPSPQLDDAQRQYVGGLAVLAARSV 265

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D    + +++E+N +
Sbjct: 266 GYTNAGTVEFLLD-SDGRFYFMEMNTR 291


>gi|238484153|ref|XP_002373315.1| urea amidolyase, putative [Aspergillus flavus NRRL3357]
 gi|220701365|gb|EED57703.1| urea amidolyase, putative [Aspergillus flavus NRRL3357]
          Length = 684

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 78/271 (28%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + LA      A    +G   E+      +    + +             K  +
Sbjct: 61  YIDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +  
Sbjct: 121 RDLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++    +   +        +            ++       
Sbjct: 181 SFATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQKII 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+        + + +   A    ++I        ++L D  +   F+LE+N      
Sbjct: 241 EECPSPFITRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M++ A
Sbjct: 296 ------RLQVEHGITELCYGVDLVELMLKQA 320


>gi|119494803|ref|XP_001264206.1| urea amidolyase, putative [Neosartorya fischeri NRRL 181]
 gi|119412368|gb|EAW22309.1| urea amidolyase, putative [Neosartorya fischeri NRRL 181]
          Length = 1237

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/271 (11%), Positives = 80/271 (29%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + +A      A    +G   E+      +    + +      +      K  +
Sbjct: 61  YIDGDQIIQIAKQNNANAIIPGYGFLSENADFARAVAAAGLVFVGPSPESIEAFGLKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +++ +  GVP+ P     I      ++    +  P ++K   GG  +G++    +  +  
Sbjct: 121 RELATKAGVPIVPGSPGLIDNEDDAVEVAQKLGYPVMLKATAGGGGMGLLTCNSEAEVRK 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++        +        +            ++       
Sbjct: 181 SFATVKSRGEALFKNAGVFIERYYPASHHIEVQVFGNGDGKAIFIGERECSIQRRHQKVI 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+        + K +   A    ++I        ++L D  +   F+LE+N      
Sbjct: 241 EECPSPFVSRKPGLRKSLGEAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M++ A
Sbjct: 296 ------RLQVEHGITELCYGMDLVELMLDQA 320


>gi|83765977|dbj|BAE56120.1| unnamed protein product [Aspergillus oryzae]
          Length = 684

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/271 (11%), Positives = 78/271 (28%), Gaps = 22/271 (8%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + LA      A    +G   E+      +    + +             K  +
Sbjct: 61  YIDGDQIIKLAKRNHVDAIIPGYGFLSENADFARAIAKAGMVFAGPSPECIEAFGLKHTA 120

Query: 97  KQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           + + +  GVP+ P     +      +     +  P ++K   GG  +G++    +  +  
Sbjct: 121 RDLATKAGVPIVPGSTGLVTSEEDAVKVAKDLGFPVMLKATAGGGGMGLLTCSSEDEVRE 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
                 S           +++    +   +        +            ++       
Sbjct: 181 SFATVRSRGEALFKNAGLFIERYYPSSHHIEVQVFGNGDGKAIAIGERECSIQRRHQKII 240

Query: 213 HVLPAKI---PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
              P+        + + +   A    ++I        ++L D  +   F+LE+N      
Sbjct: 241 EECPSPFVTRNPGLRESLGDAAVRLAESIKYGSAGTIEYLVDDETGAFFFLEMNT----- 295

Query: 270 PVSIFPEMAAYAGYS---FR-ELLLWMVEDA 296
                  +    G +   +  +L+  M++ A
Sbjct: 296 ------RLQVEHGITELCYGVDLVELMLKQA 320


>gi|16131144|ref|NP_417722.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|82545515|ref|YP_409462.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella boydii
           Sb227]
 gi|82778565|ref|YP_404914.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           dysenteriae Sd197]
 gi|89110016|ref|AP_003796.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. W3110]
 gi|157157399|ref|YP_001464729.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           E24377A]
 gi|157162736|ref|YP_001460054.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           HS]
 gi|170018501|ref|YP_001723455.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           ATCC 8739]
 gi|170082784|ref|YP_001732104.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170683611|ref|YP_001745527.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SMS-3-5]
 gi|187733602|ref|YP_001881646.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella boydii
           CDC 3083-94]
 gi|188493388|ref|ZP_03000658.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 53638]
 gi|194435434|ref|ZP_03067613.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1012]
 gi|218702021|ref|YP_002409650.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           IAI39]
 gi|218706870|ref|YP_002414389.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           UMN026]
 gi|227887973|ref|ZP_04005778.1| acetyl-CoA carboxylase [Escherichia coli 83972]
 gi|238902355|ref|YP_002928151.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli BW2952]
 gi|253771914|ref|YP_003034745.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254163191|ref|YP_003046299.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           B str. REL606]
 gi|256024170|ref|ZP_05438035.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia sp.
           4_1_40B]
 gi|260857375|ref|YP_003231266.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|260869999|ref|YP_003236401.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O111:H- str. 11128]
 gi|291284623|ref|YP_003501441.1| acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|293412624|ref|ZP_06655347.1| acetyl-CoA carboxylase [Escherichia coli B354]
 gi|293416680|ref|ZP_06659319.1| acetyl-CoA carboxylase [Escherichia coli B185]
 gi|293449579|ref|ZP_06664000.1| acetyl-CoA carboxylase [Escherichia coli B088]
 gi|298382599|ref|ZP_06992196.1| biotin carboxylase [Escherichia coli FVEC1302]
 gi|300898027|ref|ZP_07116399.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 198-1]
 gi|300904450|ref|ZP_07122296.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 84-1]
 gi|300925999|ref|ZP_07141822.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 182-1]
 gi|300928709|ref|ZP_07144227.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 187-1]
 gi|300937372|ref|ZP_07152208.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 21-1]
 gi|300948340|ref|ZP_07162449.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 116-1]
 gi|300958263|ref|ZP_07170409.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 175-1]
 gi|300991044|ref|ZP_07179465.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 45-1]
 gi|301028286|ref|ZP_07191547.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 196-1]
 gi|301047898|ref|ZP_07194945.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 185-1]
 gi|301304277|ref|ZP_07210391.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 124-1]
 gi|301326304|ref|ZP_07219675.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 78-1]
 gi|301647031|ref|ZP_07246864.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 146-1]
 gi|307139944|ref|ZP_07499300.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           H736]
 gi|309785581|ref|ZP_07680212.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1617]
 gi|309793835|ref|ZP_07688261.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 145-7]
 gi|312968413|ref|ZP_07782622.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           2362-75]
 gi|312972475|ref|ZP_07786649.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           1827-70]
 gi|331643955|ref|ZP_08345086.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H736]
 gi|331654853|ref|ZP_08355853.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M718]
 gi|331664864|ref|ZP_08365769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA143]
 gi|331674773|ref|ZP_08375532.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA280]
 gi|331684896|ref|ZP_08385488.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H299]
 gi|461457|sp|P24182|ACCC_ECOLI RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|1127198|pdb|1BNC|A Chain A, Three-Dimensional Structure Of The Biotin Carboxylase
           Subunit Of Acetyl-Coa Carboxylase
 gi|1127199|pdb|1BNC|B Chain B, Three-Dimensional Structure Of The Biotin Carboxylase
           Subunit Of Acetyl-Coa Carboxylase
 gi|9257123|pdb|1DV1|A Chain A, Structure Of Biotin Carboxylase (Apo)
 gi|9257124|pdb|1DV1|B Chain B, Structure Of Biotin Carboxylase (Apo)
 gi|198443032|pdb|2J9G|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amppnp And Adp
 gi|198443033|pdb|2J9G|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amppnp And Adp
 gi|198443114|pdb|2VR1|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Atp Analog, Adpcf2p.
 gi|198443115|pdb|2VR1|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Atp Analog, Adpcf2p.
 gi|220702200|pdb|2V58|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 1
 gi|220702201|pdb|2V58|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 1
 gi|220702202|pdb|2V59|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 2
 gi|220702203|pdb|2V59|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 2
 gi|220702204|pdb|2V5A|A Chain A, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 3
 gi|220702205|pdb|2V5A|B Chain B, Crystal Structure Of Biotin Carboxylase From E.Coli In
           Complex With Potent Inhibitor 3
 gi|237823461|pdb|2W6M|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823462|pdb|2W6M|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823463|pdb|2W6N|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823464|pdb|2W6N|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With Amino-Oxazole Fragment Series
 gi|237823465|pdb|2W6O|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
           Quinazolinone Fragment
 gi|237823466|pdb|2W6O|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 4-Amino-7,7-Dimethyl-7,8-Dihydro-
           Quinazolinone Fragment
 gi|237823467|pdb|2W6P|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
 gi|237823468|pdb|2W6P|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With 5-Methyl-6-Phenyl-Quinazoline-2,4-Diamine
 gi|237823469|pdb|2W6Q|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Triazine-2,4-Diamine Fragment
 gi|237823470|pdb|2W6Q|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Triazine-2,4-Diamine Fragment
 gi|237823471|pdb|2W6Z|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
           Ylamine Fragment
 gi|237823472|pdb|2W6Z|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The 3-(3-Methyl-But-2-Enyl)-3h-Purin-6-
           Ylamine Fragment
 gi|237823473|pdb|2W70|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Amino-Thiazole-Pyrimidine Fragment
 gi|237823474|pdb|2W70|B Chain B, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Amino-Thiazole-Pyrimidine Fragment
 gi|237823475|pdb|2W71|A Chain A, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Imidazole-Pyrimidine Inhibitor
 gi|237823476|pdb|2W71|C Chain C, Crystal Structure Of Biotin Carboxylase From E. Coli In
           Complex With The Imidazole-Pyrimidine Inhibitor
 gi|145175|gb|AAA23409.1| biotin carboxylase [Escherichia coli]
 gi|145893|gb|AAA23746.1| biotin carboxylase [Escherichia coli]
 gi|606196|gb|AAA58059.1| biotin carboxylase [Escherichia coli str. K-12 substr. MG1655]
 gi|1789654|gb|AAC76288.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. MG1655]
 gi|81242713|gb|ABB63423.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella
           dysenteriae Sd197]
 gi|81246926|gb|ABB67634.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella boydii
           Sb227]
 gi|85676047|dbj|BAE77297.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K12 substr. W3110]
 gi|157068416|gb|ABV07671.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli HS]
 gi|157079429|gb|ABV19137.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           E24377A]
 gi|169753429|gb|ACA76128.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli ATCC
           8739]
 gi|169890619|gb|ACB04326.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli str. K-12 substr. DH10B]
 gi|170521329|gb|ACB19507.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           SMS-3-5]
 gi|187430594|gb|ACD09868.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii CDC
           3083-94]
 gi|188488587|gb|EDU63690.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 53638]
 gi|194416325|gb|EDX32515.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1012]
 gi|209757578|gb|ACI77101.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|209757584|gb|ACI77104.1| acetyl CoA carboxylase biotin carboxylase subunit [Escherichia
           coli]
 gi|218372007|emb|CAR19863.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli IAI39]
 gi|218433967|emb|CAR14884.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli UMN026]
 gi|222034964|emb|CAP77707.1| biotin carboxylase [Escherichia coli LF82]
 gi|227835369|gb|EEJ45835.1| acetyl-CoA carboxylase [Escherichia coli 83972]
 gi|238859911|gb|ACR61909.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli BW2952]
 gi|242378790|emb|CAQ33582.1| accC, subunit of biotin carboxylase and acetyl-CoA carboxylase
           [Escherichia coli BL21(DE3)]
 gi|253322958|gb|ACT27560.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975092|gb|ACT40763.1| acetyl-CoA carboxylase [Escherichia coli B str. REL606]
 gi|253979248|gb|ACT44918.1| acetyl-CoA carboxylase [Escherichia coli BL21(DE3)]
 gi|257756024|dbj|BAI27526.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O26:H11 str. 11368]
 gi|257766355|dbj|BAI37850.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O111:H- str. 11128]
 gi|260447717|gb|ACX38139.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli DH1]
 gi|262176903|gb|ACY27506.1| acetyl-CoA carboxylase [Escherichia coli LW1655F+]
 gi|284923270|emb|CBG36364.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Escherichia
           coli 042]
 gi|290764496|gb|ADD58457.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O55:H7 str. CB9615]
 gi|291322669|gb|EFE62098.1| acetyl-CoA carboxylase [Escherichia coli B088]
 gi|291432036|gb|EFF05019.1| acetyl-CoA carboxylase [Escherichia coli B185]
 gi|291469395|gb|EFF11886.1| acetyl-CoA carboxylase [Escherichia coli B354]
 gi|298277739|gb|EFI19255.1| biotin carboxylase [Escherichia coli FVEC1302]
 gi|299878663|gb|EFI86874.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 196-1]
 gi|300300241|gb|EFJ56626.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 185-1]
 gi|300315050|gb|EFJ64834.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 175-1]
 gi|300358277|gb|EFJ74147.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 198-1]
 gi|300403612|gb|EFJ87150.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 84-1]
 gi|300406965|gb|EFJ90503.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 45-1]
 gi|300417943|gb|EFK01254.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 182-1]
 gi|300452153|gb|EFK15773.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 116-1]
 gi|300457591|gb|EFK21084.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 21-1]
 gi|300463298|gb|EFK26791.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 187-1]
 gi|300840403|gb|EFK68163.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 124-1]
 gi|300846970|gb|EFK74730.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 78-1]
 gi|301074803|gb|EFK89609.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 146-1]
 gi|307555342|gb|ADN48117.1| biotin carboxylase [Escherichia coli ABU 83972]
 gi|308122792|gb|EFO60054.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 145-7]
 gi|308926701|gb|EFP72177.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           1617]
 gi|309703675|emb|CBJ03016.1| biotin carboxylase (acetyl-CoA carboxylase subunit A) [Escherichia
           coli ETEC H10407]
 gi|310334852|gb|EFQ01057.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           1827-70]
 gi|312286631|gb|EFR14542.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           2362-75]
 gi|312947805|gb|ADR28632.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O83:H1 str. NRG 857C]
 gi|315137839|dbj|BAJ44998.1| acetyl CoA carboxylase [Escherichia coli DH1]
 gi|315257182|gb|EFU37150.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 85-1]
 gi|315294798|gb|EFU54141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 153-1]
 gi|315617065|gb|EFU97675.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 3431]
 gi|320175948|gb|EFW51024.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella dysenteriae
           CDC 74-1112]
 gi|320181526|gb|EFW56444.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella boydii ATCC
           9905]
 gi|320184024|gb|EFW58846.1| Biotin carboxylase of acetyl-CoA carboxylase [Shigella flexneri CDC
           796-83]
 gi|320194732|gb|EFW69362.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           WV_060327]
 gi|320202165|gb|EFW76740.1| Biotin carboxylase of acetyl-CoA carboxylase [Escherichia coli
           EC4100B]
 gi|320645618|gb|EFX14627.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H- str. 493-89]
 gi|320650928|gb|EFX19385.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H- str. H 2687]
 gi|320656309|gb|EFX24221.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O55:H7 str. 3256-97 TW 07815]
 gi|320661999|gb|EFX29407.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O55:H7 str. USDA 5905]
 gi|320666833|gb|EFX33812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           O157:H7 str. LSU-61]
 gi|323154466|gb|EFZ40667.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           EPECa14]
 gi|323165217|gb|EFZ51007.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella sonnei 53G]
 gi|323178574|gb|EFZ64150.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 1180]
 gi|323189132|gb|EFZ74416.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           RN587/1]
 gi|323936261|gb|EGB32553.1| acetyl-CoA carboxylase [Escherichia coli E1520]
 gi|323941651|gb|EGB37830.1| acetyl-CoA carboxylase [Escherichia coli E482]
 gi|323946897|gb|EGB42913.1| acetyl-CoA carboxylase [Escherichia coli H120]
 gi|323961096|gb|EGB56710.1| acetyl-CoA carboxylase [Escherichia coli H489]
 gi|324009076|gb|EGB78295.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 57-2]
 gi|331037426|gb|EGI09650.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H736]
 gi|331048235|gb|EGI20312.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli M718]
 gi|331058112|gb|EGI30094.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA143]
 gi|331068212|gb|EGI39608.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA280]
 gi|331078511|gb|EGI49717.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H299]
 gi|332086487|gb|EGI91634.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella dysenteriae
           155-74]
 gi|332087247|gb|EGI92380.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii
           5216-82]
 gi|332090910|gb|EGI96001.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella boydii
           3594-74]
 gi|332345211|gb|AEE58545.1| acetyl-CoA carboxylase, biotin carboxylase AccC [Escherichia coli
           UMNK88]
 gi|332999333|gb|EGK18919.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-272]
 gi|333014702|gb|EGK34048.1| acetyl-CoA carboxylase, biotin carboxylase [Shigella flexneri
           K-227]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|325119242|emb|CBZ54796.1| hypothetical protein NCLIV_052220 [Neospora caninum Liverpool]
          Length = 1643

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++    V  ++                      D  V  V+   +PD    
Sbjct: 466 SGSQAIKALKEQNIYVVVVNPNIATVQTSQHMADRVYFLPVTDEFVTNVIEKERPDGILC 525

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G            Q +LE        S I A   + D+      +      V    +
Sbjct: 526 TFGGQTALNCAVKLHEQGVLEKFGCKILGSPIEAIIATEDRKVFAAKLEEIGEKVAESAA 585

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + + + I  P +I+       LG    +      +  +   ++ H  Q+ +++
Sbjct: 586 ATNTEEAVAAANAIGYPVLIRAAFALGGLGSGFAED--EETVRQICKEAFAHSSQVFVDK 643

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 644 SLKGW-KEVEYEVVRDCKNNCITVCNMENLDPLGIHTGDSIVVAPSQTLSNEDYYRLRDT 702

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  DP S K + +E+N +  ++  S     +   GY    +  
Sbjct: 703 ALKVIRHFGIVGECNIQYALDPASEKYYIVEVNAR--LSRSS--ALASKATGYPLAYIAA 758

Query: 291 WM 292
            +
Sbjct: 759 KL 760


>gi|293364847|ref|ZP_06611564.1| acetyl-CoA carboxylase subunit A [Streptococcus oralis ATCC 35037]
 gi|306825796|ref|ZP_07459135.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|307703096|ref|ZP_07640043.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus oralis
           ATCC 35037]
 gi|315612598|ref|ZP_07887511.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           ATCC 49296]
 gi|291316297|gb|EFE56733.1| acetyl-CoA carboxylase subunit A [Streptococcus oralis ATCC 35037]
 gi|304432157|gb|EFM35134.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sp. oral
           taxon 071 str. 73H25AP]
 gi|307623489|gb|EFO02479.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus oralis
           ATCC 35037]
 gi|315315579|gb|EFU63618.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           ATCC 49296]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVVHLGERDCSLQRNNQKVLEESPSIAIGKTLRHEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S   +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNTR 293


>gi|228470839|ref|ZP_04055686.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas uenonis
           60-3]
 gi|228307406|gb|EEK16416.1| carbamoyl-phosphate synthase, large subunit [Porphyromonas uenonis
           60-3]
          Length = 1074

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/302 (14%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A++  G K   I+ +                       V  V+   +PD    
Sbjct: 29  SGSQALKAVKAEGIKTVLINPNIATVQTSEGVADAVYFLPVTPYFVERVIERERPDGIML 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G      G       +LE   I    + +     + D+    + +    V    S  
Sbjct: 89  AFGGQTALNCGVQLFQSGVLERYGIDVLGTPVETIMATEDRELFVEKLDEIEVKTIQSHA 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + +  P +++       LG      D+ +   +L   ++    QLLIE+
Sbjct: 149 VTTMEDALVAANQLGYPVIVRAAYALGGLGSGFCDNDEELR--VLAEKAFAFSPQLLIEK 206

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  D Y +++ +
Sbjct: 207 SLRGW-KEIEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVIAPSQTLSNDEYHKLRTI 265

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  D  S     +E+N +  ++  S     +   GY    +  
Sbjct: 266 AIKIIRHLGVVGECNVQYALDLYSEDYRVIEVNAR--LSRSS--ALASKATGYPLAHVAA 321

Query: 291 WM 292
            +
Sbjct: 322 KL 323


>gi|212541376|ref|XP_002150843.1| carbamoyl-phosphate synthase, large subunit [Penicillium marneffei
           ATCC 18224]
 gi|210068142|gb|EEA22234.1| carbamoyl-phosphate synthase, large subunit [Penicillium marneffei
           ATCC 18224]
          Length = 1181

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 127 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 186

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +         I E   +    + I     S D+    + ++   +P+  SI 
Sbjct: 187 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLFAKALNEINIPIAESIA 246

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N     +++   I  P +++       LG       + +    L S S +   Q+L+E+
Sbjct: 247 CNTVDEALEAADQIGYPIIVRSAYALGGLGSGFANNREELKN--LSSRSLSLAPQILVEK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAKNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 364 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 415


>gi|161486099|ref|NP_755878.2| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           CFT073]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|126661942|ref|ZP_01732941.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           BAL38]
 gi|126625321|gb|EAZ96010.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           BAL38]
          Length = 482

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 76/231 (32%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V   L  D      +G   E+       E   I +      A  +   K+ +K+ 
Sbjct: 66  DKIIEVCKDLGVDAVHPG-YGFLSENSAFAEACEKNNIIFIGPKSKAIEMMGSKLAAKEA 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           V    +P+ P +      ++        +  P +IK   GG   G+ V+++++     + 
Sbjct: 125 VMKYDIPMVPGVDHAIIDVEEAKKTAKAVGFPILIKASAGGGGKGMRVVEREEDFESQMN 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S           +++        +    +  +   V         ++          
Sbjct: 185 RAISEATSAFGDGSVFIEKYVTKPRHIEIQIMADSHGNVLYVFERECSIQRRHQKVVEEA 244

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+ I   +  KE+   A    +A    G    +FL D      ++LE+N +
Sbjct: 245 PSCILTPEKRKEMGEAAVKVARACDYLGAGTVEFLMDA-DHNFYFLEMNTR 294


>gi|52785463|ref|YP_091292.1| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
 gi|163119415|ref|YP_078880.2| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
 gi|52347965|gb|AAU40599.1| PycA [Bacillus licheniformis ATCC 14580]
 gi|145902921|gb|AAU23242.2| pyruvate carboxylase [Bacillus licheniformis ATCC 14580]
          Length = 1147

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/244 (12%), Positives = 81/244 (33%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++   K +   + +H   G   E+       E   I +         + 
Sbjct: 60  KPIDAYLDIEGIIEIAKRNHV-DAIHPGYGFLSENIQFAKRCEEEGIIFIGPTSEHLDMF 118

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK+++++     G+PV P     +               P++IK   GG   G+ +++ 
Sbjct: 119 GDKVKAREQAEKAGIPVIPGSDGPVADIAEVKQFAEKFGYPFIIKASLGGGGRGMRIVRD 178

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
           +  +     ++ S     + + +  + +       +   V+GD   +V  +         
Sbjct: 179 ESELVESYNRAKSEAKAAFGNDEVYVEKLIEKPKHIEVQVIGDKEGNVVHLYDRDCSVQ- 237

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             +   + +++   A    + +        +FL    + + F++E
Sbjct: 238 ---RRHQKVIEVAPSVSLSESLREKICDAAVKLAKNVEYVNAGTVEFLV--ANDEFFFIE 292

Query: 262 INVQ 265
           +N +
Sbjct: 293 VNPR 296


>gi|85118469|ref|XP_965450.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Neurospora crassa OR74A]
 gi|28927259|gb|EAA36214.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Neurospora crassa OR74A]
 gi|38567193|emb|CAE76486.1| probable carbamoyl-phosphate synthase (glutamine-hydrolyzing)
           arginine-specific large chain [Neurospora crassa]
          Length = 1168

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 113 SGSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVEYVIQREKPDGIFL 172

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +  VQ       E   +    + +    LS D+    + +    +P+  S  
Sbjct: 173 SFGGQTALNLGVQMQKLGLFEKYGVKVLGTSVRTLELSEDRDLFAKALEEINIPIAKSFA 232

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+ + I  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 233 VNTVDEALDAANKIGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 290

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + Y  ++  
Sbjct: 291 SLKGW-KEVEYEVVRDANNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 349

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 350 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 401


>gi|299152250|gb|ADJ18207.1| carbamoylphosphate synthetase [Hydroscapha natans]
          Length = 646

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 46  SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEEVIKAERPGGVLL 105

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+S    V    +
Sbjct: 106 TFGGQTGLNCGVELDRAGVFTKYGVQVLGTPIQSIIDTEDRKIFSEKVNSIGEKVAPSCA 165

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+  ++  P + +       LG         +    L + +  H +QL+I++
Sbjct: 166 VYSVEKALDAAEILGYPVLARAAFALGGLGSGFANNKDELVS--LATQALAHSNQLIIDK 223

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 224 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGVHTGESIVVAPSQTLSNXEYNMMRTT 282

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 283 AINVIRFFGIVGECNIQYAVNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 338

Query: 291 WM 292
            +
Sbjct: 339 KL 340


>gi|149914388|ref|ZP_01902919.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp. AzwK-3b]
 gi|149811907|gb|EDM71740.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter sp. AzwK-3b]
          Length = 666

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/182 (13%), Positives = 51/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 QQIGYPVMIKASAGGGGKGMRIAWTDEEAREGFESSKNEAASSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGC 240
           +    L  T             ++  +       P+    +  ++           A+G 
Sbjct: 209 IEIQVLCDTHGNGVYLGERECSIQRRNQKVIEEAPSPFLDEATRKAMGEQSLKLSHAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D   R  ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDG-DRNFYFLEMNTR----------LQVEHPVTELITGI---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|149910016|ref|ZP_01898664.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Moritella sp. PE36]
 gi|149806884|gb|EDM66845.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase)(ACC)
           [Moritella sp. PE36]
          Length = 452

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHL------KP---DLAFN----------- 56
                 A ++ G K   I    DR +  VL         KP   D   N           
Sbjct: 14  ALRILRACKEMGIKTVAIHSTADRELKHVLLADETVCIGKPAAADSYLNVPAILSAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLAENADFAEQVEQSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SW 160
                        +    I  P +IK   GG   G+ V+ ++  +   +  +       +
Sbjct: 134 SDGPLDTDAQRNKNIAKRIGYPIIIKAAGGGGGRGMRVVHEESKLLDSIALTRNEAGTFF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +   +   +   ++ D   +   +            +             I 
Sbjct: 194 GNDMVYMEKFLENPRHVEVQILADGQGNAIYLGERDCSLQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            DI + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 250 ADIRRHIGERCSRACVDINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|34398179|gb|AAQ67179.1| CAD [Hilarimorpha sp. NCSU-99072184]
          Length = 1294

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEENIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + ++     V    +
Sbjct: 430 TFGGQTALNCGVELEKAEVFKKHNVKILGTPIASIIQTEDRKVFAEKIAEIGEKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 490 VYSVQEALEAAERLGYPVMARAAFSLGGLGSGFANNQEELTN--LAQQALAHSSQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +PLS + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFAVVGECNIQYALNPLSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|194440190|ref|ZP_03072233.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 101-1]
 gi|194420879|gb|EDX36923.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 101-1]
 gi|323970329|gb|EGB65599.1| acetyl-CoA carboxylase [Escherichia coli TA007]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|317494234|ref|ZP_07952650.1| acetyl-CoA carboxylase [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316918007|gb|EFV39350.1| acetyl-CoA carboxylase [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 89/285 (31%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQIERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   ++ + +     +
Sbjct: 134 SDGPLGDDMVKNKAIAKRIGYPVIIKASGGGGGRGMRVVRGDKDLEQSIIMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|313192159|emb|CBX19939.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192163|emb|CBX19941.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  K+  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVKLNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           D++KEV+++A   ++ + C   +R D L        + LE+N  PG
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPG 128


>gi|256085879|ref|XP_002579138.1| acetyl-CoA carboxylase; methylcrotonyl-CoA carboxylase [Schistosoma
           mansoni]
 gi|238664548|emb|CAZ35377.1| acetyl-CoA carboxylase [Schistosoma mansoni]
          Length = 1189

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 71/250 (28%), Gaps = 20/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVL-----------HGNFGEDGLVQAILELLEIPYT 80
           +   +    S    L         N +           +G   E+ L  A LE + + + 
Sbjct: 92  EAVCVGPSPSAQSYL---NISAILNAVKSTSAQAVHPGYGFLSENTLFAAELEKMNVVFL 148

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGG 136
                A     DK+ SK++ +   V   P                  I  P +IK   GG
Sbjct: 149 GPNSRAIKAMGDKIESKRIANQAKVNCIPGYDGEVDGPDEAARIAAEIGYPVMIKASTGG 208

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ +   ++ +      S S            ++        +    L         
Sbjct: 209 GGKGMRIAWDEKEVREGYRLSKSEAKASFGDDRMLIEKFIDNPRHIEIQLLCDRHGNAIY 268

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
            +     ++  +       P+      + K +   A    +A+        +FL D    
Sbjct: 269 LNERECSIQRRNQKVIEEAPSTFLDSGLRKAMGEQAVSLAKAVNYDSAGTVEFLVDSKRN 328

Query: 256 KVFWLEINVQ 265
             ++LE+N +
Sbjct: 329 -FYFLEMNTR 337


>gi|237710889|ref|ZP_04541370.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           9_1_42FAA]
 gi|237727199|ref|ZP_04557680.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D4]
 gi|229434055|gb|EEO44132.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides dorei
           5_1_36/D4]
 gi|229454733|gb|EEO60454.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           9_1_42FAA]
          Length = 389

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A       F+V   +D D ++  V+A  KPD+    +     E         +  +
Sbjct: 39  AMQVADE-----FEVFSMLDGD-ALDAVVAKHKPDIIVPEIEAIRTERLYHLEQEGIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P V+KPL   S
Sbjct: 93  PSARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSLEELKEAAKEIGFPCVVKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  ++K    +          + GD   +        +             +      
Sbjct: 152 GKGQSLVKSADELEQAWHYGCEGSRGDIKELIIEE---FIQFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +  KE QR+A     A+   GI   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|21229990|ref|NP_635907.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66766866|ref|YP_241628.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. 8004]
 gi|21111506|gb|AAM39831.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
 gi|66572198|gb|AAY47608.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           campestris pv. campestris str. 8004]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGISEELRAEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF     + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--EGGRFYFIEMNTR 292


>gi|304391575|ref|ZP_07373517.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ahrensia sp. R2A130]
 gi|303295804|gb|EFL90162.1| methylcrotonoyl-CoA carboxylase subunit alpha [Ahrensia sp. R2A130]
          Length = 643

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/190 (14%), Positives = 65/190 (34%), Gaps = 30/190 (15%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P +IK + GG   G+  ++K       L  +       + + D L+ +   +  
Sbjct: 148 AYEIGYPVLIKAVAGGGGKGMRKVEKPAEFAEALSAAMREAQAAFGNDDVLVEKFIENPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD+  +V  +            +             +  ++   + + A  A 
Sbjct: 208 HIEVQVFGDSQGNVVHLFERDCSLQ----RRHQKVIEEAPAPGMTPELRAAMGQAACRAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRK--VFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
           +A+G +G    +F+      +   +++E+N +              +       G    +
Sbjct: 264 EAVGYQGAGTVEFIVSGDLGEDSFYFMEMNTR----------LQVEHPVTEAITGV---D 310

Query: 288 LLLWMVEDAS 297
           L+ W +  AS
Sbjct: 311 LVEWQLRVAS 320


>gi|296113060|ref|YP_003626998.1| acetyl-CoA carboxylase biotin carboxylase AccC [Moraxella
           catarrhalis RH4]
 gi|295920754|gb|ADG61105.1| acetyl-CoA carboxylase biotin carboxylase AccC [Moraxella
           catarrhalis RH4]
 gi|326560436|gb|EGE10818.1| biotin carboxylase [Moraxella catarrhalis 7169]
 gi|326561640|gb|EGE11977.1| biotin carboxylase [Moraxella catarrhalis 103P14B1]
 gi|326563587|gb|EGE13841.1| biotin carboxylase [Moraxella catarrhalis 12P80B1]
 gi|326565829|gb|EGE15991.1| biotin carboxylase [Moraxella catarrhalis BC1]
 gi|326570484|gb|EGE20524.1| biotin carboxylase [Moraxella catarrhalis BC8]
 gi|326571168|gb|EGE21192.1| biotin carboxylase [Moraxella catarrhalis BC7]
 gi|326573458|gb|EGE23426.1| biotin carboxylase [Moraxella catarrhalis 101P30B1]
 gi|326575644|gb|EGE25567.1| biotin carboxylase [Moraxella catarrhalis CO72]
 gi|326577108|gb|EGE27002.1| biotin carboxylase [Moraxella catarrhalis O35E]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 69/211 (32%), Gaps = 6/211 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+      +E   + +         L  +K   + + +      VP     +   
Sbjct: 82  YGFLSENAEFAERVEEAGLTFVGPHPEHIRLMGNKVSAINAMKEAGVPTVPGSIGAITLG 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    I  P ++K   GG   G+ V+++ + + + +  + +           Y++  
Sbjct: 142 NAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEAQNAFGDDTVYMERF 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
                 +    L                L+          P   IP ++   +      A
Sbjct: 202 LKNPRHVEVQVLGDGNGNALHLFDRDCSLQRRHQKVLEEAPAPDIPDEVRTPILEACVHA 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG RG    +FL+   + + F++E+N +
Sbjct: 262 CKKIGYRGAGTFEFLY--ENGEFFFIEMNTR 290


>gi|296417048|ref|XP_002838177.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634091|emb|CAZ82368.1| unnamed protein product [Tuber melanosporum]
          Length = 1167

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 88/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 117 SGSQAIKALKEAGKKSILINPNIATIQTSHFLADEVYYLPVTPEYVSHVIERERPDGIFL 176

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G  G +       +       +++  T    L ++   D            +    +
Sbjct: 177 TFGGQTGLNVGVQMDKMGIFDRMGVKVLGTPIKTLETSEDRDLFAKALNEIEIPIAESIA 236

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P +++       LG       + +    L + S +   Q+L+E+
Sbjct: 237 VNSVDEALDAAEKIGYPIIVRSAYALGGLGSGFANDREELHD--LSARSLSLSPQILVEK 294

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 295 SLKGW-KEVEYEVVRDGSNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 353

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 354 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 405


>gi|264677127|ref|YP_003277033.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni CNB-2]
 gi|262207639|gb|ACY31737.1| phosphoribosylglycinamide formyltransferase 2 [Comamonas
           testosteroni CNB-2]
          Length = 390

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/280 (12%), Positives = 78/280 (27%), Gaps = 39/280 (13%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++  +KPDL    +
Sbjct: 9   GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEEVKPDLVVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK---------QVVSSCGVPVCP 109
                    +   LE   +        A+ L+MD+   +                     
Sbjct: 69  E---AIATPMLEELEAAGVITCIPTARAARLTMDREGIRRLAAETLGLPTSPYRFCDSLA 125

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       D Q  I  P V+KP+   S  G   I     +        +   G      
Sbjct: 126 ELQAAIDGSDGQPAIGYPCVVKPVMSSSGKGQSKIDGPADVAKA--WDYAMAGGRVAKGR 183

Query: 170 QYVDG---IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             V+G    +     +   +                 ++ +        P  +     ++
Sbjct: 184 VIVEGFIDFDYEITQLTVRAKGADGQIETHFCDPVGHIQQAGDYVESWQPHPMHPAALEK 243

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +++A      +   G+   +        +V++ E++ +P
Sbjct: 244 SRQIAKAVTDDLDGLGLFGVELFV--KGEQVWFSEVSPRP 281


>gi|188989941|ref|YP_001901951.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. campestris str. B100]
 gi|167731701|emb|CAP49879.1| accC [Xanthomonas campestris pv. campestris]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQ----RRHQKVVEEAPAPGISEELRAEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF     + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--EGGRFYFIEMNTR 292


>gi|149369312|ref|ZP_01889164.1| biotin carboxylase, subunit of acetyl CoA carboxylase [unidentified
           eubacterium SCB49]
 gi|149356739|gb|EDM45294.1| biotin carboxylase, subunit of acetyl CoA carboxylase [unidentified
           eubacterium SCB49]
          Length = 451

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 71/216 (32%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E   I +  +         DK  +K  + + GVP  P     I   
Sbjct: 82  YGFLSENAKFSKICEEHNIKFIGASPDMIDKMGDKANAKSTMIAAGVPCVPGSEGVIETF 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +        P ++K   GG   G+  + K++ +      +       + + D  + +
Sbjct: 142 EDCLKIAKETGYPVMLKASAGGGGKGMRAVWKEEDLQDAWESARQESKAAFGNDDMYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++GD+      ++           +     +       +  ++   +  
Sbjct: 202 LIEEPRHIEIQIIGDSKGKACHLSERDCSIQ----RRHQKLTEETPSPFMTDELRAAMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + I   G    +FL D      +++E+N +
Sbjct: 258 AAVKAAEYIKYEGAGTVEFLVDKHRN-FYFMEMNTR 292


>gi|58580179|ref|YP_199195.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84622177|ref|YP_449549.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|166713762|ref|ZP_02244969.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzicola BLS256]
 gi|188578814|ref|YP_001915743.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           oryzae pv. oryzae PXO99A]
 gi|289663897|ref|ZP_06485478.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. vasculorum NCPPB702]
 gi|289669485|ref|ZP_06490560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Xanthomonas
           campestris pv. musacearum NCPPB4381]
 gi|58424773|gb|AAW73810.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           oryzae pv. oryzae KACC10331]
 gi|84366117|dbj|BAE67275.1| biotin carboxylase subunit of acetyl CoA carboxylase [Xanthomonas
           oryzae pv. oryzae MAFF 311018]
 gi|188523266|gb|ACD61211.1| acetyl-CoA carboxylase, biotin carboxylase [Xanthomonas oryzae pv.
           oryzae PXO99A]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  ++ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRNQIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   +   +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--ENGSFYFIEMNTR 292


>gi|23099340|ref|NP_692806.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oceanobacillus
           iheyensis HTE831]
 gi|22777569|dbj|BAC13841.1| acetyl-CoA carboxylase biotin carboxylase subunit [Oceanobacillus
           iheyensis HTE831]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/212 (15%), Positives = 73/212 (34%), Gaps = 5/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +      A      K  +K+ + +  VPV P     +   
Sbjct: 82  YGFLAENADFAEICRACNITFVGPTPKAIQQMGIKDVAKETMKNANVPVVPGSEGIVDTT 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              ++  + I  P +IK   GG   GI V + ++ +   +  +             Y++ 
Sbjct: 142 EDAIEVANSIGYPVIIKATAGGGGKGIRVARSEEELIKGMEITQKEAETAFGNPGVYLEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    L  T   V         ++          P+    + I  ++   +  
Sbjct: 202 FIEDFRHVEIQILADTHGNVIHLGERDCSIQRRLQKLIEESPSPALNESIRAKMGEASVK 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +++FD  + + +++E+N +
Sbjct: 262 AAKAVEYVGAGTIEYIFDRKTNEFYFMEMNTR 293


>gi|329962782|ref|ZP_08300683.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
 gi|328529437|gb|EGF56345.1| ATP-grasp domain protein [Bacteroides fluxus YIT 12057]
          Length = 403

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/298 (13%), Positives = 91/298 (30%), Gaps = 32/298 (10%)

Query: 22  CASALEDAGFKVSQID-------------------VDRSVGLVLA-HLKPDLAFN-VLHG 60
              A    G+ V   D                   +D+   L LA  L+ D   +  +  
Sbjct: 18  VIEAAHKLGYHVITCDYIPDNIAHKYSDEYHNVSIIDKEAVLALARRLQIDGIMSFAVDP 77

Query: 61  NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS 120
                  VQ  + L          +    + D+ R+        VP           +  
Sbjct: 78  GVVTAAYVQEQMGLPAF--GPYESVCILQNKDRFRNFLTQHGFNVPKAKGFSSIEEALSE 135

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            +    P ++KP     S G+  +   + +   L  +   +   ++++E++++    +  
Sbjct: 136 TYWYPWPVIVKPTDAAGSKGVTRVDCLRELKPALEYAFEHSMSKRVIVEEFIEKQGCSSD 195

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
               +     +     +  +  +       S +  P+    +   E+        + +G 
Sbjct: 196 TDSFSVDGELKFVSYSAQRFDADAANPYTPSAYSWPSTFTAEQEAELTSELQRLLKLLGM 255

Query: 241 R-GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           R  I   +     L+ K + +E++ + G    +   EM     G    +L+   V  A
Sbjct: 256 RTSIYNVETRI-GLNGKPYIMEVSPRGG---GNRLAEMLRFATGV---DLITNAVRAA 306


>gi|299483078|gb|ADJ19284.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Tongamya sp. MDT-2010]
          Length = 1293

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 33/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +PD    
Sbjct: 384 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTREYVEQVIKAERPDGVLL 443

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + VS     V    +
Sbjct: 444 TFGGQTGLNCGVELERVGIFKKYNVRILGTPIQSIIETEDRKIFAERVSEIGEKVAPSEA 503

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +               +Q    +L Q +   H +QL+I++
Sbjct: 504 VYSVQEALEAAERLGYPVMARXAAFSLGGLGSGFANNQEELTNLAQQAL-AHSNQLIIDK 562

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 563 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 621

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 622 AIKVIRHFNVIGECNIQYALNPFSLEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 677

Query: 291 WM 292
            +
Sbjct: 678 KL 679


>gi|206602747|gb|EDZ39228.1| Acetyl-CoA carboxylase, biotin carboxylase [Leptospirillum sp.
           Group II '5-way CG']
          Length = 456

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/217 (17%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     I +   + +      + +L  DK R+K ++    VPV P    
Sbjct: 82  AIHPGYGFLSENAHFAEICQSAGVVFIGPSPESISLMGDKARAKSLMRETRVPVVPGSQG 141

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +        I  P +IK   GG   G+ ++ ++      L  + +         E
Sbjct: 142 AISSEEEAITLSREIGYPLIIKASAGGGGRGMRIVHQEGDFDNALHAAQTEAFQAFGSKE 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L   E  V         ++          P+ +    + +E+ 
Sbjct: 202 VYIEKYFQNPRHVEIQILADAEGNVYSLGERDCSIQRRHQKLVEESPSPVLSAKLRQEMS 261

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL D      F++E+N +
Sbjct: 262 EAAVRAARAAGYVNAGTVEFLVDDRRN-FFFIEMNTR 297


>gi|161613566|ref|YP_001587531.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi B str. SPB7]
 gi|254788782|sp|A9MUY8|PURT_SALPB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|161362930|gb|ABX66698.1| hypothetical protein SPAB_01286 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
          Length = 392

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 76/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I   + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIHSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|289620596|emb|CBI52957.1| unnamed protein product [Sordaria macrospora]
          Length = 1147

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 45/296 (15%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 92  SGSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVEYVIQREKPDGIFL 151

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +  VQ       E   +    + +    LS D+    + +    +P+  SI 
Sbjct: 152 SFGGQTALNLGVQMQKLGLFEKYGVKVLGTSVRTLELSEDRDLFAKALEEINIPIAKSIA 211

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+ + I  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 212 VNTVDEALDAANKIGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 269

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + Y  ++  
Sbjct: 270 SLKGW-KEVEYEVVRDANNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 328

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 329 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 380


>gi|170759827|ref|YP_001788039.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum A3
           str. Loch Maree]
 gi|169406816|gb|ACA55227.1| ATP-grasp domain protein [Clostridium botulinum A3 str. Loch Maree]
          Length = 342

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 87/278 (31%), Gaps = 20/278 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           K + I+   S+  +    K DL   +    F      +   + L      S     ++  
Sbjct: 47  KCTDINYIDSLLDICKKEKIDLLIPLYEREFNTLCNDREKFKELGTTLLLSHKNLISICN 106

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK  + +      +    S           D+   ++ P+++KPL G  S G+       
Sbjct: 107 DKWNTYKFFIENNINTPISYTKENIENILKDNPEELNFPFILKPLDGMGSAGVFKANNKT 166

Query: 149 SI-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +      +       +  G +  I+   D       ++    ++V    V KS   +++
Sbjct: 167 QLEFFKDYIKEPIIQEFVEGTEYTIDVLCDLKGEIISIVPRERIEVRSGEVSKSKTVNHK 226

Query: 204 LKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                     +    H+   K+   + ++      L        G      +      ++
Sbjct: 227 EIIKATLNLVNKLKQHIEEYKVYCKVARKNFNTPPLEKDEASVIGPLTIQCIVTKEE-EI 285

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++EIN + G       P      G  + +   +MVE+
Sbjct: 286 KFIEINPRFG----GGVPLSFKA-GVDYGKYFRYMVEE 318


>gi|110807116|ref|YP_690636.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella
           flexneri 5 str. 8401]
 gi|110616664|gb|ABF05331.1| acetyl CoA carboxylase [Shigella flexneri 5 str. 8401]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSTDRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENASFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|85067519|gb|ABC69245.1| putative geranyl-CoA carboxylase alpha subunit [Pseudomonas
           citronellolis]
          Length = 662

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++    +   L  + S         E  ++   +   
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVQAADELAAQLRTARSEALNAFGSDELILEKAVIRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       +   +         ++          P  +   ++ + +   A  A   + 
Sbjct: 210 HVEIQVFGDSHGNLVYLGERDCSVQRRHQKVIEEAPCPVLSAELRQAMGEAAVKAAARVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S   ++LE+N +
Sbjct: 270 YIGAGTVEFLLDA-SGAFYFLEMNTR 294


>gi|56750944|ref|YP_171645.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus
           elongatus PCC 6301]
 gi|81299399|ref|YP_399607.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus
           elongatus PCC 7942]
 gi|81596267|sp|Q5N3J5|PURT_SYNP6 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123741832|sp|Q31QP9|PURT_SYNE7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|56685903|dbj|BAD79125.1| glycinamide ribonucleotide transformylase [Synechococcus elongatus
           PCC 6301]
 gi|81168280|gb|ABB56620.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus
           elongatus PCC 7942]
          Length = 391

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/233 (17%), Positives = 76/233 (32%), Gaps = 11/233 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V+   +PDL    +     E         L  IP   +          +  + Q 
Sbjct: 61  EALEAVVQEFQPDLIIPEIEAIRTEKLQEFEDRGLTVIPTARATHFTMNRDRIRDLAAQQ 120

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +                       I  P VIKP+   S  G  +I++   +      + +
Sbjct: 121 LGLRT-ARYAYASCFEELQTVAAAIGYPNVIKPVMSSSGKGQSIIQQPDQLQAAWDYAIA 179

Query: 160 WNHGD-QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            + GD Q +I +     EL   ++         +  P         +          PA 
Sbjct: 180 GSRGDSQKVILEEFIPFELEITLLTIRQWQGPTLFCPPIGHR----QERGDYQESWQPAP 235

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +  D+  + Q +A    +A+G  G+   +F   P   +V + E++ +P   GM
Sbjct: 236 LRPDLLAQAQAIAAQVTEALGGAGLFGVEFFVTP--DEVIFSELSPRPHDTGM 286


>gi|27376098|ref|NP_767627.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Bradyrhizobium
           japonicum USDA 110]
 gi|27349237|dbj|BAC46252.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Bradyrhizobium
           japonicum USDA 110]
          Length = 658

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++    S P  L  + S            ++       
Sbjct: 157 ARKIGFPVMIKAVAGGGGRGMRLVTDAASFPDALRSARSEAKAAFGDATVILERAIQNPR 216

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +                     ++          P+  +  ++   +  +A  A +A+ 
Sbjct: 217 HIEIQVFGDNHGNAIHLGERDCSVQRRHQKLIEEAPSPAVTPELRARMGEVAVAAVKALR 276

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D  S + +++E+N +
Sbjct: 277 YEGAGTLEFLLDA-SGEFYFMEMNTR 301


>gi|254934015|gb|ACT87616.1| carbamoylphosphate synthetase [Lyssa zampa]
          Length = 730

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 130 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 190 TFGGQTALNCGVELEKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 250 VTSVEEALLAAKRIGYPVMARSAFSLGGLGSGFANNEDELKT--LAHQALSHSDQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WM 292
            +
Sbjct: 423 KL 424


>gi|218526246|gb|ACK86530.1| carbamoyl-phosphate synthase [Podallea madegassica]
          Length = 722

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +PD    
Sbjct: 132 SGSQAIKALKEEHIQTILMNPNIATVQTSKGLADKVYFLPLMPEYVEQVIRSERPDGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+      V+     V    +
Sbjct: 192 TFGGQTALNCGVELEQAGIFKKYGVQILGTPIKSIIETEDRKIFADRVNEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG         +   +L + +  H  QL+I++
Sbjct: 252 VYSVEEALKAAETIGYPVMARAAFSLGGLGSGFANNSDEL--KILATQALAHSSQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLRGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AIKVIRHFGVVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|242771524|ref|XP_002477860.1| urea amidolyase, putative [Talaromyces stipitatus ATCC 10500]
 gi|218721479|gb|EED20897.1| urea amidolyase, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1245

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+++      +   L Q  S           +++       
Sbjct: 149 ADELGYPVMLKATGGGGGMGLVICNSPSEVRDALAQVRSRGAALFKNAGVFLERYYAKSH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQA 237
            +                     ++          P+       D+ + +   A    ++
Sbjct: 209 HIEVQVFGNGLGNAIHFGERECSIQRRHQKVVEECPSPFVDKNPDLRRRLTSAAVALAES 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           +        ++L D +S   F+LE+N             +    G +   +  +L+  M+
Sbjct: 269 VKYASAGTVEYLVDDVSGDFFFLEMNT-----------RLQVEHGITELCYGVDLVKLML 317

Query: 294 EDA 296
           E A
Sbjct: 318 EQA 320


>gi|254371969|ref|ZP_04987462.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. novicida GA99-3549]
 gi|151569700|gb|EDN35354.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           GA99-3549]
          Length = 386

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNSDALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVKHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMSDTALAKSQEIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|115397487|ref|XP_001214335.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114192526|gb|EAU34226.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 389

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/317 (18%), Positives = 98/317 (30%), Gaps = 41/317 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPD--------------------LAFNV 57
           SG   A  L   G  V   +V  S         PD                    + FN 
Sbjct: 63  SGADIAYNLRAKGVTVVTPEVHPSDRDHEGWCFPDTAEGIQRAVQKGATHLWANTILFN- 121

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
            H     D L      L  +      +          R    +    +P    I  +   
Sbjct: 122 SHPLQASDTLNAFASSLYVVGQPPGLVENFDDKAYLNRKLGQMGGFTLPRSWIITSSDDV 181

Query: 118 MDSQHLI-SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                 I   P V KP++G  S G+ V      +   L           +++E+++ G E
Sbjct: 182 DSVIRSIGQYPVVGKPIRGRGSHGVKVCHSATDLRQHLEALF--RESPTVMVEEFLSGEE 239

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN--------STHVLPAKIPLDIYKEVQ 228
            T  VM  +       ++P    +++    +  N        S  V P ++    + E+ 
Sbjct: 240 ATVTVMPPSPDRPEYWSMPPVVRFNHADGIAPYNGVVAVTANSRTVSPVEMGDASFTELM 299

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAA 279
           R +    + IG     R D        +    +IN++P MT           S+    AA
Sbjct: 300 RQSARVAEVIGATAPIRVDARRFEPGSRFALFDINMKPNMTGPGRPGREDQASLTALAAA 359

Query: 280 YAGYSFRELLLWMVEDA 296
             G+ +  LL  +++ A
Sbjct: 360 AIGWDYPTLLQRILQCA 376


>gi|74313785|ref|YP_312204.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella sonnei
           Ss046]
 gi|73857262|gb|AAZ89969.1| acetyl CoA carboxylase, biotin carboxylase subunit [Shigella sonnei
           Ss046]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGRGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|319401608|gb|EFV89818.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis FRI909]
          Length = 375

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 28/264 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNFGEDGLVQAI 71
           GK  A + +  G+KV  +D +       V     H   D   A N L  N          
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDDEQALNQLGKNSDVVTYEFEN 80

Query: 72  L------ELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL 123
           +      +L ++ +   G  A  L  D++  KQ    ++  +     I  N+  + +   
Sbjct: 81  ISSEQLKKLTQLYHIPQGYQAIELLQDRLTEKQTLLEANTQIVPFVQIQTNQDLLKAIEK 140

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +  P+++K   GG      + ++ D  +              +  ++   +         
Sbjct: 141 LGFPFIVKTRFGGYDGKGQILVRNDSELDEAYQLVEKQECVAEQYLDIKKEVSLTVTIGN 200

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +           +   ++                  D   E ++      +AI   G
Sbjct: 201 EQQTTYFPLQENEHQNQILFKTVV-----------PARTDKEYEARKEVEKITRAIHFVG 249

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               +F  D     ++  EI  +P
Sbjct: 250 TFTVEFFIDKEDN-LYVNEIAPRP 272


>gi|313192171|emb|CBX19945.1| D alanine-D alanine ligase [Clostridium perfringens]
 gi|313192173|emb|CBX19946.1| D alanine-D alanine ligase [Clostridium perfringens]
          Length = 128

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/106 (23%), Positives = 47/106 (44%), Gaps = 4/106 (3%)

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           +  +++IE+Y+ G E+TC ++    L V  I      F                  ++  
Sbjct: 27  YDTEVMIEEYIKGDEITCPIIDGKMLPVLAIKPKGKFFD--IASKYEDGGADEFIVELNE 84

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
           D++KEV+++A   ++ + C   +R D L        + LE+N  PG
Sbjct: 85  DLHKEVEKMALETYKLLKCDVYARVDMLV--KDNIPYVLEVNTLPG 128


>gi|313108040|ref|ZP_07794206.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa 39016]
 gi|310880708|gb|EFQ39302.1| geranyl-CoA carboxylase, alpha-subunit (biotin-containing)
           [Pseudomonas aeruginosa 39016]
          Length = 661

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +   L  + S   G     E  ++       
Sbjct: 150 AERIGYPLMIKASAGGGGRGMRLVQEPGQLLEQLRTARSEALGAFGSAELILERAVPRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +           +         ++          P  +   D+ + +   A  A  ++ 
Sbjct: 210 HVEIQVFGDRHGNLLYLGERDCSVQRRHQKVIEEAPCPVLDADLRRAMGEAAVKAAASVN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL      + ++LE+N +
Sbjct: 270 YVGAGTVEFLL-GEDGRFYFLEMNTR 294


>gi|300934144|ref|ZP_07149400.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium resistens DSM
           45100]
          Length = 595

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/158 (15%), Positives = 46/158 (29%), Gaps = 2/158 (1%)

Query: 109 PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             I   +   +       P  IK   GG   G+ V+++ + I    + +           
Sbjct: 143 HPIHDWQEAREFAEEHGMPIAIKAAFGGGGRGLKVVERKEDIEDAFVSAGREAKEAFGRP 202

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEV 227
           E YV+   +    +    L      V          +          PA     +    +
Sbjct: 203 ECYVEKFLMRPRHVEAQVLADDHGNVAVIGTRDCSTQRRFQKLIEEAPAPFLTDEQRTSI 262

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +    +  G RG    +F+       V +LE+N +
Sbjct: 263 VEGSRQICRTAGYRGAGTVEFIVSE-DGTVSFLEVNTR 299


>gi|266620894|ref|ZP_06113829.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           hathewayi DSM 13479]
 gi|288867474|gb|EFC99772.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           hathewayi DSM 13479]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 72/248 (29%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D       G   E+     + E   I +   
Sbjct: 47  EAICIGPAPSTQSYLNMERILTATVAMKADAIHPGF-GFLSENARFAELCEKCNITFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    +K  +++ +   GVPV P     +            I  P +IK   GG  
Sbjct: 106 SAEIINKMGNKSEARKTMMEAGVPVVPGGKEAVHEVEEARLVAEKIGYPVMIKASSGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ + +  +    +   +   +         Y++        +    +      V    
Sbjct: 166 KGMRISRGPEDFDANFQNAQMESVKGFSDDTMYIEKYIEKPRHIEFQIMADKYGNVVHLG 225

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+  I  ++ K +   A  A +A+G       +FL D      
Sbjct: 226 ERDCSIQRRHQKVLEESPSAAISEELRKRMGDTAVRAAKAVGYENAGTIEFLLDKHKN-F 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|157148834|ref|YP_001456153.1| acetyl-CoA carboxylase biotin carboxylase subunit [Citrobacter
           koseri ATCC BAA-895]
 gi|157086039|gb|ABV15717.1| hypothetical protein CKO_04667 [Citrobacter koseri ATCC BAA-895]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAISAMKQAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|154496258|ref|ZP_02034954.1| hypothetical protein BACCAP_00543 [Bacteroides capillosus ATCC
           29799]
 gi|150274341|gb|EDN01418.1| hypothetical protein BACCAP_00543 [Bacteroides capillosus ATCC
           29799]
          Length = 1147

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 39/253 (15%), Positives = 77/253 (30%), Gaps = 25/253 (9%)

Query: 32  KVSQIDVDRS----------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   I  ++S          +  +    K D      +G   E+       E   I +  
Sbjct: 54  EAYLIGHNKSPLGAYLDIPAIIDLAKRRKVDAIHPG-YGFLSENPDFARACEEAGIKFIG 112

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGS 137
                 A   DK+ +K    +CGVP  P         D           P ++K   GG 
Sbjct: 113 PSSEVLARMGDKLAAKATAIACGVPTIPGSDRPLKDADEALEKAISYGFPIILKAAAGGG 172

Query: 138 SLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             G+    K + +        +     +   D  + +  V+   +   ++GD   +V  +
Sbjct: 173 GRGMRRCDKPEEVAPAFELVRNEARKAFGSEDIFIEKYLVEPKHIEVQILGDQYGNVMHL 232

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                       K         +P     +I  ++   A    + +G       +FL D 
Sbjct: 233 GERDCSLQRRYQKVVEYAPAWSVPQ----EIRDKLHADAVKVAKHVGYVNAGTVEFLVD- 287

Query: 253 LSRKVFWLEINVQ 265
                +++E+N +
Sbjct: 288 KDGNHYFIEMNPR 300


>gi|84501841|ref|ZP_00999999.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
 gi|84389836|gb|EAQ02470.1| acetyl/propionyl CoA carboxylase alpha subunit [Oceanicola
           batsensis HTCC2597]
          Length = 673

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 26/140 (18%), Positives = 53/140 (37%), Gaps = 1/140 (0%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P+++K   GG   G+ ++      P  +  + +   G       +++        +    
Sbjct: 159 PFLVKASAGGGGRGMRLVTDLGEAPEAIASARAEAQGAFGDPAVFLERYAPRARHVEVQV 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISR 245
           L  T   V         L+ +        PA    + +  +++  A    QAIG R    
Sbjct: 219 LGDTHGTVLHLGDRDCSLQRNHQKLIEEAPAADLPEAVRDDMRAAAVRLAQAIGYRSAGT 278

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            ++L+DP   + F+LE+N +
Sbjct: 279 VEYLYDPARGEYFFLEMNTR 298


>gi|148549470|ref|YP_001269572.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           F1]
 gi|148513528|gb|ABQ80388.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           F1]
          Length = 393

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVNMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFTVVPTARATQLTMNREGIRRLAAEELDLPT-SPYHFADTYEDYA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++ D  +        +   G        V+G    
Sbjct: 143 KAVADLGYPCVVKPVMSSSGKGQSLLRSDADLQA--SWDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFEYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMSPKALAESQRVAKAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|327313557|ref|YP_004328994.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           F0289]
 gi|326944331|gb|AEA20216.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella denticola
           F0289]
          Length = 393

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/203 (17%), Positives = 65/203 (32%), Gaps = 21/203 (10%)

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--Q 165
                      ++   I  P V+KPL   S  G   +  D  +      +     GD  +
Sbjct: 121 YFYAKTYEEFKEAADEIGFPCVVKPLMSSSGHGQSYVHNDDELQEAFKNAMEGARGDVKE 180

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++IE+++D       +        T    P         +          P  I  +  +
Sbjct: 181 VIIEEFIDFDSEFTLLTVTQKNGPTLFCPPIGHV-----QKGGDYRESWQPYTISDEALQ 235

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM------TPVSIFPE 276
           + + +A    +A+   GI   +F     S +V + E++ +P   GM      T  S F  
Sbjct: 236 QAEHMADEVTRALTGYGIWGVEFFLT-RSGEVIFSELSPRPHDTGMVTLAHTTNFSEFEL 294

Query: 277 MAAY-AGYSFRELLLWMVEDASC 298
                 G     +    +E A C
Sbjct: 295 HFRAVMGLPIPAI---HLEHAGC 314


>gi|326335386|ref|ZP_08201574.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
 gi|325692451|gb|EGD34402.1| acetyl-CoA carboxylase, biotin carboxylase [Capnocytophaga sp. oral
           taxon 338 str. F0234]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P ++K   GG   G+  + K++ +      ++      + +    + +   +  
Sbjct: 148 AKKMGYPVMLKATAGGGGKGMRAVWKEEDLEKAFESATQEAAAAFGNDGMYMEKLIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +     +       +  ++ K++   A  A 
Sbjct: 208 HIEIQIVGDQFGKACHLSERDCSIQ----RRHQKLTEETPSPFMTEELRKKMGDAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++I   G+   +FL D      +++E+N +
Sbjct: 264 ESIKYEGVGTVEFLVDKHRN-FYFMEMNTR 292


>gi|261342708|ref|ZP_05970566.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterobacter
           cancerogenus ATCC 35316]
 gi|288315360|gb|EFC54298.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterobacter
           cancerogenus ATCC 35316]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDVNRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSIAMTKAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCSKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|224510928|pdb|3G8D|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
 gi|224510929|pdb|3G8D|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E296a
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 444

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|218680540|ref|ZP_03528437.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Rhizobium
           etli CIAT 894]
          Length = 474

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/250 (15%), Positives = 79/250 (31%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERAAFCAELEKQGIVFIGPKPRAIMAMGDKIESKKFANAAGVSTVPGHLGVIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +IS     P +IK   GG   G+ +   +  +     ++ S           +++ 
Sbjct: 142 AHAEVISGGIGYPVMIKASAGGGGKGMRIAWNEAEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FIVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDEKTRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LAKAVDYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRVAA 317


>gi|145896|gb|AAA23748.1| biotin carboxylase [Escherichia coli]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|295107772|emb|CBL21725.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus obeum
           A2-162]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 67/217 (30%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +        A   +K  +K  +++ GVP+ P    
Sbjct: 77  AIHPGFGFLSENSRFAELCEQCNITFIGPPANVIASLGNKQAAKNTMANAGVPIIPGGKN 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I            I  P +IK   GG   G+ V             +            
Sbjct: 137 PIYTVEEGQKEAETIGYPVIIKAALGGGGKGMRVADTPADFEESFRTAQKETQMAFGDST 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            YV+        +    +      V         ++ +        P + I  ++ + + 
Sbjct: 197 MYVEHFVRHPRHIEFQIMADKFGNVIHLGERDCSIQRNHQKMIEESPCEVITEELRERMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL D    + +++E+N +
Sbjct: 257 GAAVKAAKAAGYENAGTIEFLLD-KDGRFYFMEMNTR 292


>gi|224510926|pdb|3G8C|A Chain A, Crystal Stucture Of Biotin Carboxylase In Complex With
           Biotin, Bicarbonate, Adp And Mg Ion
 gi|224510927|pdb|3G8C|B Chain B, Crystal Stucture Of Biotin Carboxylase In Complex With
           Biotin, Bicarbonate, Adp And Mg Ion
          Length = 444

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|194245496|gb|ACF35357.1| carbamoylphosphate synthetase [Amphizoa lecontei]
          Length = 669

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 69  SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 128

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     + E   +    + I A   + D+    + +      V    +
Sbjct: 129 TFGGQTALNCGVELQRAKVFEKYGVRILGTPIEAIIDTEDRKIFSENIALIGEKVAPSCA 188

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 189 VCNVAEALEAAEILGYPVMARAAFSLGGLGSGFADNKEELKT--LAQQALAHSSQLIIDK 246

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 247 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 305

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 306 AINVIRHFGVVGECNIQYALNPYSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 361

Query: 291 WM 292
            +
Sbjct: 362 KL 363


>gi|119952469|ref|YP_949947.1| pyruvate carboxylase [Arthrobacter aurescens TC1]
 gi|119951599|gb|ABM10509.1| Pyruvate carboxylase [Arthrobacter aurescens TC1]
          Length = 1126

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P  +K + GG   G+  +     +   L        G       +++   +T  
Sbjct: 148 ARDLRYPLFVKAVAGGGGRGMRRVDNPDDLRDALETCMREAEGAFGDPTVFIEQAVVTPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L   E  V         ++        + PA      +   +   A    + IG
Sbjct: 208 HIEVQILADGEGNVVHLYDRDCSVQRRHQKVVEIAPAPNLDSALRDRMCADAVRFAREIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL DP      ++E+N +
Sbjct: 268 YVNAGTVEFLLDPEGN-YVFIEMNPR 292


>gi|109114631|ref|XP_001111746.1| PREDICTED: acetyl-CoA carboxylase 1-like isoform 4 [Macaca mulatta]
 gi|109114633|ref|XP_001111786.1| PREDICTED: acetyl-CoA carboxylase 1-like isoform 5 [Macaca mulatta]
          Length = 2346

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRMDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|66806001|ref|XP_636722.1| acetyl-CoA carboxylase [Dictyostelium discoideum AX4]
 gi|74852642|sp|Q54J08|ACAC_DICDI RecName: Full=Acetyl-CoA carboxylase; AltName: Full=ACC-alpha;
           Includes: RecName: Full=Biotin carboxylase
 gi|60465120|gb|EAL63219.1| acetyl-CoA carboxylase [Dictyostelium discoideum AX4]
          Length = 2282

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/171 (12%), Positives = 48/171 (28%), Gaps = 5/171 (2%)

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
            S+       +     I       +    +  P +IK  +GG   GI  +   + +    
Sbjct: 170 YSECNGVPSEIYGRACINSVEEARECAQRVGFPAMIKASEGGGGKGIRKVTSMEDLESSF 229

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            Q  +   G  +   + V         +             +        +        +
Sbjct: 230 RQVQNEVPGSPIFFMKLVSNARHLEVQIVADRHGEAISLNGRDCSVQRRHQKIIEEGPAI 289

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            P     +  +     A    + +G  G    ++LF     + ++LE+N +
Sbjct: 290 APTPQVWEEMERA---AVRLVKEVGYVGAGTVEYLFAE--GEYYFLELNPR 335


>gi|332521192|ref|ZP_08397650.1| pyruvate carboxylase [Lacinutrix algicola 5H-3-7-4]
 gi|332043285|gb|EGI79482.1| pyruvate carboxylase [Lacinutrix algicola 5H-3-7-4]
          Length = 1150

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 79/235 (33%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  ++  +      D      +G   E+           I +            DK+ 
Sbjct: 63  LDI-EAIIDLAKSKNVDAIHPG-YGFLSENSEFARQCAANGIIFIGPDPKVMDALGDKIT 120

Query: 96  SKQVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+V   C VP+  S      ++         I  P ++K   GG   G+ +I+K + + 
Sbjct: 121 AKKVAVKCNVPIIESNKKKLTSLKVALSQAETIGYPIMLKAASGGGGRGMRIIRKAEDLE 180

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
           L+   + +           +++        +    +      +         ++      
Sbjct: 181 LNFDSARNEALNAFGDDTMFLEKYVEDPKHIEVQIVADNHGNIRHLHERDCSVQRRHQKV 240

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P+    + + +++ + A    + +    I   +FL D     ++++E+N +
Sbjct: 241 VEIAPSHNVSENVKQQLYKYAVSIAKEVNYNNIGTVEFLVDREDN-IYFIEVNPR 294


>gi|323344538|ref|ZP_08084763.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oralis
           ATCC 33269]
 gi|323094665|gb|EFZ37241.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella oralis
           ATCC 33269]
          Length = 403

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/232 (12%), Positives = 72/232 (31%), Gaps = 12/232 (5%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +   +PD+    +      + L     + +++  +   +  +              
Sbjct: 73  LDAAVRKHRPDIIVPEIE-AIRTERLFDFERQGIQVVPSARAVNFTMNRKAIRDLAAKEL 131

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                             +   I  P V+KPL   S  G  +++ +  +      +   +
Sbjct: 132 GLRTAKYFYARTFDEFKSAALKIGFPCVVKPLMSSSGHGQSIVRAEDELHKAFDNAMQGS 191

Query: 162 HGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            GD  +L+IE+++        +        T    P         +          P +I
Sbjct: 192 RGDVKELIIEEFIRFKSEFTLLTVTQMNGPTLFCPPIGHV-----QKGGDYRESWQPYRI 246

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
                +  + +A+   +A+   GI   +F       +V + E++ +P   GM
Sbjct: 247 DSTALRHAEDMAYKVTRALTGAGIWGVEFFLTEE-NEVIFSELSPRPHDTGM 297


>gi|260772969|ref|ZP_05881885.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio metschnikovii
           CIP 69.14]
 gi|260612108|gb|EEX37311.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio metschnikovii
           CIP 69.14]
          Length = 391

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 79/281 (28%), Gaps = 29/281 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                   +D   +  V+   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYANAPATQVAHRYHVFDMLDPQALQQVIEQEQPHYIVPEV 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L         IP   +  L       +  + + +S                +
Sbjct: 82  EAIATDKLLELETQGFSVIPTAKATQLTMNREGIRRLAAEQLSLPT-SNYQFADSYEQFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V KP+   S  G  V+K  + I        +   G        V+G    
Sbjct: 141 LAVEQIGLPCVCKPIMSSSGKGQSVLKSPEDIEQA--WHYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     + +     S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAIDGVHFCAPIGHRQEEGDYRESWQ--PQAMSENALKAAEYVAEEIVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
           G  G+   +        +V + E++ +P      +   ++ 
Sbjct: 257 GGYGLFGVELFV--KGDQVIFNEVSPRP--HDTGMVTMISQ 293


>gi|161486839|ref|NP_782770.2| pyruvate carboxylase [Clostridium tetani E88]
          Length = 1145

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/281 (13%), Positives = 80/281 (28%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A E+ G +   I                   + ++ G V A+L  D   +    
Sbjct: 17  AIRIFRACEELGIRTVAIYSNEDKFSLFRTKADESYLIGKNKGPVEAYLNIDEIISLAIK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GV   P
Sbjct: 77  KGVDAIHPGYGFLSENSEFANKCRDAGIEFIGPTGDIIEKLGDKIQSKIVAKEAGVETIP 136

Query: 110 SILV----NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +           +       P ++K   GG   G+ ++K+++ +      +        
Sbjct: 137 GVERAITSEEEAFEIARECGYPVMVKAAAGGGGRGMRIVKEEKDLISTFNNAKEEARKAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            +   +++        +    L      +         ++          PA    +  +
Sbjct: 197 GIDSLFIEKYLEGPKHIEVQILGDKHGNIVHMYERDCSIQRRHQKVVEFAPALSITEEKR 256

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +          +A+G       +FL D      +++E+N +
Sbjct: 257 QEICNDALKIARAVGYVNAGTVEFLVDKYGNH-YFIEVNPR 296


>gi|238789812|ref|ZP_04633594.1| Biotin carboxylase [Yersinia frederiksenii ATCC 33641]
 gi|238722171|gb|EEQ13829.1| Biotin carboxylase [Yersinia frederiksenii ATCC 33641]
          Length = 449

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SEMRRYIGDRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|315604590|ref|ZP_07879653.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 180 str. F0310]
 gi|315313602|gb|EFU61656.1| acetyl-coA carboxylase carboxyl transferase subunit alpha
           [Actinomyces sp. oral taxon 180 str. F0310]
          Length = 595

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 47/141 (33%), Gaps = 6/141 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V+K   GG   GI V++    + L   +          L   +V+        +   
Sbjct: 155 YPVVLKRADGGGGRGITVVRSTSDLDLFFARH----GDSADLGAHFVERFVEVARHVETQ 210

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
                             ++  +       PA    D  ++ +   +    + +G  G+ 
Sbjct: 211 CARDALGNFHVISTRDCSVQRRNQKLVEEAPAPFLPDGAHEHLVGASRALFEQVGYVGVG 270

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL +P    +++LE+N +
Sbjct: 271 TVEFLLEP-DGSIWFLEVNPR 290


>gi|296119119|ref|ZP_06837691.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Corynebacterium
           ammoniagenes DSM 20306]
 gi|295967954|gb|EFG81207.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Corynebacterium
           ammoniagenes DSM 20306]
          Length = 576

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/156 (16%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +   +       P  IK   GG   G+ V+     I      +           E 
Sbjct: 139 IDDWQQAREFAEEHGLPIAIKAAYGGGGRGLKVVHNIDDIESAFNSAGREAMEAFGRAEC 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           YV+        +    L  T   V          +          PA    D     +  
Sbjct: 199 YVEKFLTHPRHVEAQVLADTHGTVAVLGTRDCSTQRRFQKLIEEAPAPSLSDAQRDGIIE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +F+       + +LE+N +
Sbjct: 259 GARSICSKVGYTGAGTVEFIVSE-DGTISFLEVNTR 293


>gi|229490729|ref|ZP_04384567.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rhodococcus
           erythropolis SK121]
 gi|229322549|gb|EEN88332.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Rhodococcus
           erythropolis SK121]
          Length = 679

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ +++   ++   L  +             +++   L   
Sbjct: 153 AEDIGYPVLVKPSAGGGGKGMRLVEDPANLAEALRSARREAASSFGDDTLFLERFVLRPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +   +    +   A    +++ 
Sbjct: 213 HIEVQVLADQHGNVVHLGERECSLQRRHQKVIEEAPSPLLDQVTRDRIGAAACNTARSVD 272

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G    +F+       + F++E+N       P         EM    G    +L+ W V
Sbjct: 273 YTGAGTVEFIVSADKPDEFFFMEMNTRLQVEHP-------VTEM--VTGL---DLVEWQV 320

Query: 294 EDASCLR 300
             A+  +
Sbjct: 321 RVAAGEK 327


>gi|226305320|ref|YP_002765278.1| acyl-CoA carboxylase alpha chain [Rhodococcus erythropolis PR4]
 gi|226184435|dbj|BAH32539.1| probable acyl-CoA carboxylase alpha chain [Rhodococcus erythropolis
           PR4]
          Length = 679

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ +++   ++   L  +             +++   L   
Sbjct: 153 AEDIGYPVLVKPSAGGGGKGMRLVEDPANLAEALRSARREAASSFGDDTLFLERFVLRPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI-YKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +   +    +   A    +++ 
Sbjct: 213 HIEVQVLADQHGNVVHLGERECSLQRRHQKVIEEAPSPLLDQVTRDRIGAAACNTARSVD 272

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G    +F+       + F++E+N       P         EM    G    +L+ W V
Sbjct: 273 YTGAGTVEFIVSADKPDEFFFMEMNTRLQVEHP-------VTEM--VTGL---DLVEWQV 320

Query: 294 EDASCLR 300
             A+  +
Sbjct: 321 RVAAGEK 327


>gi|218132926|ref|ZP_03461730.1| hypothetical protein BACPEC_00787 [Bacteroides pectinophilus ATCC
           43243]
 gi|217991799|gb|EEC57803.1| hypothetical protein BACPEC_00787 [Bacteroides pectinophilus ATCC
           43243]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 75/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN-----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   ++    L   K   A        +H   G   E+     + E   I +    
Sbjct: 47  EAVCIGPAQAADSYLDMEKIISATIITKAEAIHPGFGFLSENSRFATLCEKCNIKFIGPD 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   +K  +K  + + GVPV P     +   +  +        P ++K   GG   
Sbjct: 107 AALIESLGNKSEAKNTMQAAGVPVIPGTKKPVYDWQEGLKFADEAGYPVIVKAALGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V+        + L +   +         Y++   +    +    L      V     
Sbjct: 167 GMRVVSSHDEFEHEFLTAQRESESAFGDGTMYIEKYIVNPRHIEFQILADEHGNVIHLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P+      + K +   A  A + +G +     +FL D      +
Sbjct: 227 RDCSIQRRHQKLIEESPSVAVDAGLRKRMGETAVRAAKTVGYKNAGTIEFLLD-KDNNFY 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FMEMNTR 292


>gi|57168200|ref|ZP_00367339.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           RM2228]
 gi|305431655|ref|ZP_07400824.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
 gi|57020574|gb|EAL57243.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           RM2228]
 gi|304445250|gb|EFM37894.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter coli
           JV20]
          Length = 443

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/243 (17%), Positives = 86/243 (35%), Gaps = 13/243 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I     I +    + A  L  DK ++KQV+   GVPV P     +   
Sbjct: 83  YGFLSENQTFVEICAKHNIKFIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGA 142

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                    I  P ++K   GG   G+ V++ ++ +      + S           Y++ 
Sbjct: 143 EAAKKLAKEIGYPVILKAAAGGGGRGMRVVEHEKDLEKAYWSAESEAMTAFGDGTMYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFL 233
                  +    +  +   V         ++          PA +  +  +  +   A  
Sbjct: 203 YIQNPRHIEVQIIGDSFGNVIHIGERDCSMQRRHQKLIEESPAILLDEKTRARLHETAVK 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
           A +AI   G    +FL D  +   +++E+N +  +       EM   +G    +++  M+
Sbjct: 263 AAKAISYEGAGTFEFLVD-KNLDFYFIEMNTR--LQVEHCVSEM--VSGI---DIIEQMI 314

Query: 294 EDA 296
           + A
Sbjct: 315 KVA 317


>gi|224540871|ref|ZP_03681410.1| hypothetical protein CATMIT_00014 [Catenibacterium mitsuokai DSM
           15897]
 gi|224526206|gb|EEF95311.1| hypothetical protein CATMIT_00014 [Catenibacterium mitsuokai DSM
           15897]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 24/186 (12%), Positives = 59/186 (31%), Gaps = 27/186 (14%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIE 176
           + I  P +IK   GG   G+     +  +    + +       +   D  + +  ++   
Sbjct: 149 NEIGYPVLIKASAGGGGRGMRKAFSEDELENAFMTAKAEAKACFGDDDMYVEKLVLNPKH 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +   ++ D   +V  +            + +           +   +  ++   A  A Q
Sbjct: 209 IEFQILADEHGNVIHLGERDCSIQ----RRNQKMIEEAPCKVLDASLRLKMGESAVKAAQ 264

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
             G       +F+ D  +   +++E+N       P +T +          G    +L+  
Sbjct: 265 GAGYTNAGTVEFVLDEHNN-YYFIEMNTRIQVEHP-ITEM--------VTGI---DLIKQ 311

Query: 292 MVEDAS 297
            +  AS
Sbjct: 312 QIRIAS 317


>gi|162453191|ref|YP_001615558.1| Urea amidolyase-related protein [Sorangium cellulosum 'So ce 56']
 gi|161163773|emb|CAN95078.1| Urea amidolyase-related protein [Sorangium cellulosum 'So ce 56']
          Length = 1218

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 16/181 (8%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG  +G+        +P    +       +    E +++        + 
Sbjct: 156 IGYPVLLKASAGGGGIGMARCDGPAELPAAFERVQRLARSNFGSGEVFLERFLAAPRHVE 215

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
                    +V         ++  +       PA   P  +   +   A      +  R 
Sbjct: 216 VQIAGDGRGSVLVLGDRDCSVQRRNQKVLEEAPAPDLPPRLRSALAESARALAAKVAYRN 275

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDASC 298
           +   +FL DP   + ++LE+N +     G+T +          G    +L+ WM+  A+ 
Sbjct: 276 VGTVEFLVDPARAEHYFLEVNTRLQVEHGVTEL--------CTGV---DLVEWMLRIAAG 324

Query: 299 L 299
            
Sbjct: 325 D 325


>gi|300022364|ref|YP_003754975.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomicrobium
           denitrificans ATCC 51888]
 gi|299524185|gb|ADJ22654.1| acetyl-CoA carboxylase, biotin carboxylase [Hyphomicrobium
           denitrificans ATCC 51888]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/223 (17%), Positives = 72/223 (32%), Gaps = 16/223 (7%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     ILE  +I +         +  DK+ +K+     G+PV P  
Sbjct: 76  DAVHPG-YGFLSENARFAEILEEHKITFIGPTSEHIRIMGDKIEAKETAKRLGIPVVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNH 162
              +      M     +  P +IK   GG   G+ V      +   L  + S     +N 
Sbjct: 135 NGAVTSETEAMKVAKDMGFPVLIKAAAGGGGRGMKVATSAADLGTALATARSEAKAAFND 194

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
               + +       +   V GD   +   +            K    + +  L A     
Sbjct: 195 DAVYIEKYLQKPRHIEIQVFGDGKGNAVHLGERDCSLQRRHQKVLEESPSPALNAAQRQK 254

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I          A + +  RG    +FLF     + +++E+N +
Sbjct: 255 IGN----TVADAMRKLKYRGAGTVEFLF--EDGEFYFIEMNTR 291


>gi|58584712|ref|YP_198285.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
 gi|58419028|gb|AAW71043.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Wolbachia
           endosymbiont strain TRS of Brugia malayi]
          Length = 659

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/252 (11%), Positives = 73/252 (28%), Gaps = 18/252 (7%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLA-----FNVLH---GNFGEDGLVQAILELLEIP 78
           +++ +    I    S    L   K            +H   G   E+      L+   I 
Sbjct: 50  DESKY----IGPSPSCLSYLNIEKICEVAVETGVQAVHPGYGFLAENPDFPYALQKYNID 105

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLK 134
           +         ++ +K+ +K+     GV + P  +               I  P ++K   
Sbjct: 106 FIGPSAETIEVTANKITAKKAARKAGVNIVPGYMGKINDAAHAAQVAEEIGFPVMLKAAS 165

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           GG   G+ ++   + I L    + +           +++        +    +      V
Sbjct: 166 GGGGKGMRIVNSKKEIELAFTSAKNEAEKSFKDGSIFIEKYIELPRHIEIQIIADKYGNV 225

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPL 253
                    ++ ++       P+    +  ++          +  G       +F     
Sbjct: 226 VCLGERECSVQRNNQKIIEETPSPFISEKVRQEMYAQCVSLAKQAGYFSAGTIEF-VADK 284

Query: 254 SRKVFWLEINVQ 265
            +  ++LE+N +
Sbjct: 285 DQNFYFLEVNTR 296


>gi|228936409|ref|ZP_04099207.1| hypothetical protein bthur0009_48460 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
 gi|228823241|gb|EEM69075.1| hypothetical protein bthur0009_48460 [Bacillus thuringiensis
           serovar andalousiensis BGSC 4AW1]
          Length = 417

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/230 (14%), Positives = 82/230 (35%), Gaps = 22/230 (9%)

Query: 75  LEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
                T +  L    ++ +   K+ ++          ++N  T  +   IS P V+KP+ 
Sbjct: 99  QRTYDTEALNLVRYKNLTRQHFKENITKLNFKQPGYAIINPSTNLNSKDISFPCVLKPVD 158

Query: 135 GGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-------LLIEQYVDGIELTCGVMGDASL 187
              S G+ +    + + L L         ++        L+E+Y++G E +  ++  +  
Sbjct: 159 DSGSNGVSICSNKEDLELALNHEMGREKNERGYILEKKWLVEEYIEGQEYSAEMLFTSEG 218

Query: 188 DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
                   K  +  + ++   + S  + P +   +    +  +  L        G +  +
Sbjct: 219 WKLISVTKKDIYGKHAVECGHVTSNELSPVENLEEYCINLLTIFKL------NYGAAHIE 272

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
           F+       ++ +EIN +         P++     G    +++  +V  A
Sbjct: 273 FI--SKDDGLYLVEINPR---LAGDCIPDLVKIATGV---DMIENIVFQA 314


>gi|172041440|ref|YP_001801154.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           urealyticum DSM 7109]
 gi|171852744|emb|CAQ05720.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           urealyticum DSM 7109]
          Length = 437

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/275 (11%), Positives = 75/275 (27%), Gaps = 27/275 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+    AL+  G +V  +D                       ++  ++  ++P +    +
Sbjct: 27  GRELTIALQRFGVEVHAVDRYRGAPAHNVANHSHVLDLMDGDALRELITEVRPHIVVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +          + I  T      +                   V           
Sbjct: 87  EALAVDVLAELEEEGTVTIAPTARAAQLTMDREKIRTMVSEELGIPTGVHRFASTPEELT 146

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ--SSSWNHGDQLLIEQYVDGIE 176
                +  P V+KP+   +  G   +     +        S      +++++E++V    
Sbjct: 147 AVAEEVGFPCVVKPVVSSAGRGQSYVASADELDAAWDFALSDVRVTCEKVIVEKFVPFDY 206

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   +   V+  +           +          PA +        + +A     
Sbjct: 207 EITLLTVRSIDPVSGQSATWFCEPIGHRQDLGKYVESWQPATMGDSALDNARSVAARVTN 266

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A+G RG+   +         V++ E++ +P   GM
Sbjct: 267 ALGGRGVFGVELFI--KGDDVYFSEVSPRPHDTGM 299


>gi|118498301|ref|YP_899351.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. novicida U112]
 gi|194323885|ref|ZP_03057660.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. novicida FTE]
 gi|171472967|sp|A0Q8N2|PURT_FRATN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|118424207|gb|ABK90597.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           U112]
 gi|194321782|gb|EDX19265.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           tularensis subsp. novicida FTE]
          Length = 386

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNADALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQQLNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMSDTALAKSQGIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|116333567|ref|YP_795094.1| biotin carboxylase [Lactobacillus brevis ATCC 367]
 gi|116098914|gb|ABJ64063.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Lactobacillus brevis ATCC 367]
          Length = 473

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/217 (14%), Positives = 65/217 (29%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +  +I +         L  DK  ++  + +  VPV P    
Sbjct: 84  AIHPGYGFLSENATFARLCQQCQITFIGPNADLIDLMGDKAHARAAMQANQVPVIPGSDG 143

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P ++K   GG   GI  ++    +P    Q             
Sbjct: 144 VLDSADQAVQIAQKIGYPVLLKSAAGGGGKGIREVQTAAELPAAFEQVQQEAKLSYGDAA 203

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
            Y++        +    +      V         L+          P   I     + + 
Sbjct: 204 VYLEKCIGQAKHIEMQVIADNFGEVVYLPERDCSLQRHHQKVIEESPCGMIDAKQRQWLG 263

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +    A + +G       +FL D      +++E+N +
Sbjct: 264 QTVARATRKLGYTNTGTFEFLMD-QDHHFYFIEMNTR 299


>gi|119195703|ref|XP_001248455.1| carbamoyl-phosphate synthase, arginine-specific, large chain
           [Coccidioides immitis RS]
          Length = 1174

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   KPD  F 
Sbjct: 118 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEKEKPDGIFL 177

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  VQ           +++  T    L ++   D            +    +
Sbjct: 178 SFGGQTALNLGVQMNRLGIFEKYGVKVLGTSIKTLETSEDRDLFAKALNEIDIPIAESIA 237

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 238 VSTVDEALEAADKIGYPIIVRSAYALGGLGSGFAANAEELKN--LSSRSLTLAPQILVEK 295

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 296 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 354

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 355 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 406


>gi|86357841|ref|YP_469733.1| propionyl-CoA carboxylase alpha chain protein [Rhizobium etli CFN
           42]
 gi|86281943|gb|ABC91006.1| propionyl-CoA carboxylase alpha chain protein [Rhizobium etli CFN
           42]
          Length = 669

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 78/250 (31%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVFTVPGHLGVIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                I+     P +IK   GG   G+ +   +  +     ++ S           +++ 
Sbjct: 142 AHAETIAGGIGYPVMIKASAGGGGKGMRIAWNEAEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDEKTRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LAKAVDYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRIAA 317


>gi|85711997|ref|ZP_01043051.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina baltica
           OS145]
 gi|85694183|gb|EAQ32127.1| 3-methylcrotonyl-CoA carboxylase alpha chain [Idiomarina baltica
           OS145]
          Length = 667

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 75/250 (30%), Gaps = 20/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFN--------VLH---GNFGEDGLVQAILELLEIPYT 80
           +   I    S    L   K D   N         +H   G   E+     + +  +I + 
Sbjct: 57  EAYYIGPAPSNESYL---KADTIINVAKSAGADAIHPGYGFLSENESFAELCQQNDIIFV 113

Query: 81  HSGILASALSMDKMRSKQVVSSCGVP----VCPSILVNRFTMDSQHLISPPYVIKPLKGG 136
              + A A    K  +K ++   GVP       S             +  P ++K   GG
Sbjct: 114 GPPVSAIAAMGSKSAAKAIMEEAGVPLVPGYHGSEQDEDTLFAKAKEVGFPLLLKAAYGG 173

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ V++ +Q     L  +           +   +        +              
Sbjct: 174 GGKGMRVVESEQDFKSALSSAKREAKSSFGNDKVLFERFIRNPRHVEIQVFCDQHGNAVY 233

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          PA    +  ++     A  A +AI   G    +FL+D  S 
Sbjct: 234 LAERDCSVQRRHQKVIEEAPAPALSETTRQAMGEAAVKAAKAIDYVGAGTVEFLYDA-SG 292

Query: 256 KVFWLEINVQ 265
           + F++E+N +
Sbjct: 293 EFFFMEMNTR 302


>gi|326562603|gb|EGE12914.1| biotin carboxylase [Moraxella catarrhalis 46P47B1]
          Length = 447

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 30/211 (14%), Positives = 70/211 (33%), Gaps = 6/211 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDK---MRSKQVVSSCGVPVCPSILVNR 115
           +G   E+      +E   + +         L  +K   + + +      VP     +   
Sbjct: 82  YGFLSENAEFAERVEEAGLTFVGPHPEHIRLMGNKVSAINAMKEAGVPTVPGSIGAITLG 141

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
              +    I  P ++K   GG   G+ V+++ + + + +  + +           Y++  
Sbjct: 142 NAEEQAREIGFPLIVKAAAGGGGRGMRVVERFEELLIQVQAAKTEAQNAFGDDTVYMERF 201

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLA 234
                 +    L   +            L+          P   IP ++   +      A
Sbjct: 202 LKNPRHVEVQVLGDGDGNALHLFDRDCSLQRRHQKVLEEAPAPDIPDEVRTPILEACVHA 261

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG RG    +FL+   + + F++E+N +
Sbjct: 262 CKKIGYRGAGTFEFLY--ENGEFFFIEMNTR 290


>gi|321477841|gb|EFX88799.1| hypothetical protein DAPPUDRAFT_187192 [Daphnia pulex]
          Length = 716

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 27/192 (14%), Positives = 55/192 (28%), Gaps = 29/192 (15%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQ 170
             +     I  P +IK   GG   G+ +   D         S       +     L+ + 
Sbjct: 190 HCIQIARDIGYPVMIKASAGGGGKGMRIAWNDAEAREGFRLSKQEAASSFGDDRMLVEKF 249

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
             +   +   ++GD   +V  +   +        + +           I       + + 
Sbjct: 250 VDNPRHIEIQILGDKQGNVIYLNERECSIQ----RRNQKVIEEAPSTFIDPATRMAMGQQ 305

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYS 284
           A    + IG       +FL D      ++LE+N +              +       G  
Sbjct: 306 AVTLAKKIGYCSAGTVEFLVDSKKN-FYFLEMNTR----------LQVEHPITEMITGV- 353

Query: 285 FRELLLWMVEDA 296
             +L+  M+  A
Sbjct: 354 --DLVHQMIRVA 363


>gi|188589531|ref|YP_001921278.1| pyruvate carboxylase [Clostridium botulinum E3 str. Alaska E43]
 gi|188499812|gb|ACD52948.1| pyruvate carboxylase [Clostridium botulinum E3 str. Alaska E43]
          Length = 1146

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 A  + G +   I                   + ++ G V A+L  D        
Sbjct: 17  AIRIFRACHELGIRTVAIYSEEDKRALFRTKAHEAYQIGKNKGPVEAYLNIDEIIKLALK 76

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+       E + I +            DK++SK V  + GVPV P
Sbjct: 77  KNVDAIHPGYGFLSENPEFARRCEEVGIEFIGPKSEMMDQLGDKIKSKIVAKNVGVPVIP 136

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +            I+     P +IK   GG   G+ +++ +  +    L + +      
Sbjct: 137 GVEKPINCEKEAMEIAGMCGYPVMIKAAAGGGGRGMRIVRNENELVDAFLSAKNEAKKAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            + + +++        +    L      V         ++        + PA     +  
Sbjct: 197 GIDDMFIEKYIEGPKHIEIQILGDKYGNVVHLYERDCSIQRRHQKVIEISPALSLTQEKR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+   A    +A+  R     +FL D      +++E+N +
Sbjct: 257 EEICADALKIAKAVDYRNAGTLEFLVDMHGNH-YFIEMNPR 296


>gi|169351371|ref|ZP_02868309.1| hypothetical protein CLOSPI_02151 [Clostridium spiroforme DSM 1552]
 gi|169291593|gb|EDS73726.1| hypothetical protein CLOSPI_02151 [Clostridium spiroforme DSM 1552]
          Length = 450

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 73/235 (31%), Gaps = 15/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++      L  D       G   E+     ++E   + +         +  +K  ++Q 
Sbjct: 64  KNILSAATALGCDAIHPGF-GFLSENSTFARLVEECGMTFIGPSGDIIDMMGNKSMARQK 122

Query: 100 VSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           +    VPV P    S+            I  P +IK   GG   G+     +        
Sbjct: 123 MIEANVPVVPGSDGSVNTLEDARKVAKEIGFPVLIKASAGGGGRGMRKAFSEDEFDDAYL 182

Query: 155 ----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  + +   D  + +  ++   +   ++ D   +V  +            + +   
Sbjct: 183 TAKAEAKACFGDDDMYIEKLILNPKHIEFQILADNYGNVIHLGERDCSIQ----RRNQKM 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +   + +++   A  A +  G R     +++ D      +++E+N +
Sbjct: 239 IEEAPSKALTPLLRQKMGEDAIKAAKGAGYRNAGTIEYVLD-QDGNYYFIEMNTR 292


>gi|209549468|ref|YP_002281385.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209535224|gb|ACI55159.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 669

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 79/250 (31%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLGVIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +I+     P +IK   GG   G+ +   +  +     ++ S           +++ 
Sbjct: 142 AHAEVIAGGIGYPVMIKASAGGGGKGMRIAWNEVEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FIVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDEKTRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LAKAVDYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRVAA 317


>gi|13471012|ref|NP_102581.1| propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti
           MAFF303099]
 gi|14021756|dbj|BAB48367.1| propionyl-CoA carboxylase alpha chain precursor [Mesorhizobium loti
           MAFF303099]
          Length = 670

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +      +     ++ S           +++   +   
Sbjct: 148 AGEIGYPVMIKASAGGGGKGMRIAWNQSEVRDGFDRARSEAKSSFGDDRVFIEKFVVDPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++  +       P+       ++     +    +A+ 
Sbjct: 208 HIEIQVLADAHGNALYLGERECSIQRRNQKVAEEAPSPFLDAKTRKAMGEQSVALARAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDKDKN-FYFLEMNTR----------LQVEHPVTELVTGI---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|271500719|ref|YP_003333744.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya dadantii
           Ech586]
 gi|270344274|gb|ACZ77039.1| phosphoribosylglycinamide formyltransferase 2 [Dickeya dadantii
           Ech586]
          Length = 392

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVLA-HLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D      L    +PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMQVAHRSHVINMLDSDALKQLVLQERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVALEQQGQRVVPCAEATRLTMNREGIRRLAAETLGLPT-SSYRFAADEAAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP+   S  G  +I+  + +        +   G     +  V+G+   
Sbjct: 143 QAAQELGFPCIVKPVMSSSGKGQSLIRSPEQLDHA--WRYAQEGGRAGGGKVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P  +        + +A    +A+
Sbjct: 201 DFEITLLTIHAADGLHFCDPIGHRQEDG--DYRESWQPQHMSDLALARAKEIAGNVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFICGDD--VIFSEVSPRPHDTGM 289


>gi|163754510|ref|ZP_02161632.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Kordia
           algicida OT-1]
 gi|161325451|gb|EDP96778.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Kordia
           algicida OT-1]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 76/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I     I +  +
Sbjct: 47  EAVCIGPAPSSESYLKMANIIAAAEITNADAIHPG-YGFLSENAKFSKICGEHNIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                +   DK  +K  + + GVP  P     I               P ++K   GG  
Sbjct: 106 SEEMISKMGDKATAKATMKAAGVPCVPGSEGIIESFEECEKLAVETGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + + D  + +   +   +   V+GD+S     ++
Sbjct: 166 KGMRAVWKPEDLRDAWDSARQESKAAFGNDDMYMEKLIEEPRHIEIQVVGDSSGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +  V    +  D+   +   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEEVPSPFMTDDLRARMGEAAVKAAEFIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|254511818|ref|ZP_05123885.1| RimK-like ATP-grasp domain family protein [Rhodobacteraceae
           bacterium KLH11]
 gi|221535529|gb|EEE38517.1| RimK-like ATP-grasp domain family protein [Rhodobacteraceae
           bacterium KLH11]
          Length = 681

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 52/183 (28%), Gaps = 21/183 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D         S +           +++        
Sbjct: 149 NQIGYPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGC 240
           +    L  +             ++  +       P+    +   K +   A    +A+  
Sbjct: 209 IEIQVLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDVATRKAMGEQAVALAKAVDY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DAS 297
            A+
Sbjct: 315 VAA 317


>gi|260807671|ref|XP_002598632.1| hypothetical protein BRAFLDRAFT_67029 [Branchiostoma floridae]
 gi|229283905|gb|EEN54644.1| hypothetical protein BRAFLDRAFT_67029 [Branchiostoma floridae]
          Length = 1470

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/276 (13%), Positives = 90/276 (32%), Gaps = 16/276 (5%)

Query: 18  SGKACASALEDAGFKVSQIDVDRSVG-LVLAHLKPDLAFNVLHGN----FGEDGLVQAIL 72
           SG     AL+     V  + +       V+   KPD     + G      G +   Q IL
Sbjct: 452 SGSQAIKALKAD--HVYFLPITPEFVTDVIKREKPDGILLSMGGQTALNCGVELFKQGIL 509

Query: 73  ELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPSILVNRFTMDSQHLISPPYVI 130
           +   +    + I +   + D+      +   +  +    ++   +  +++   I  P ++
Sbjct: 510 QENGVQVLGTPIESVMATEDRQIFSDKLTEINEKIAPSFAVESVKEALEAAAEIGYPVMV 569

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           +       LG  + +    +     ++ +    +Q+LIE+ + G                
Sbjct: 570 RAAYALGGLGSGLAEDRHKLKDIATKAFAM--SNQILIEKSLLGW-KEVEYEVVRDSADN 626

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
            + V   + +     ++  +        +    Y  ++  A    + +G  G     +  
Sbjct: 627 CVTVCNMENFDPLGVHTGDSIVVAPSQTLSNYEYHMLRETAIKVVRHLGIVGECNIQYAL 686

Query: 251 DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            P S +   +E+N +  ++  S     +   GY   
Sbjct: 687 HPQSLEYCIIEVNAR--LSRSS--ALASKATGYPLA 718


>gi|86358568|ref|YP_470460.1| carbamoyl phosphate synthase large subunit [Rhizobium etli CFN 42]
 gi|86282670|gb|ABC91733.1| carbamoyl-phosphate synthase large chain (ammonia chain) protein
           [Rhizobium etli CFN 42]
          Length = 1162

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/335 (14%), Positives = 86/335 (25%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T    + 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQEKGEVVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDAID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + ++  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARLVAAEIGFPLVVRPSYVLGGRAMQILHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G                ++     
Sbjct: 795 EGQLQTYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLTHAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +P+++  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRSLPVELLDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.9 bits (91), Expect = 0.53,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.9 bits (86), Expect = 1.9,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++LIE+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLIEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|33603708|ref|NP_891268.1| biotin carboxylase [Bordetella bronchiseptica RB50]
 gi|33577833|emb|CAE35098.1| biotin carboxylase [Bordetella bronchiseptica RB50]
          Length = 454

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/149 (16%), Positives = 53/149 (35%), Gaps = 7/149 (4%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIE 176
               I  P ++K   GG   G+ V++ + ++   +  + +      G+  L  +      
Sbjct: 148 QARAIGFPLIVKAAGGGGGRGMRVVEHEAALHGAVQTTRAEALAAFGNPDLYMERFLQRP 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +   A               S + ++  +      P   P  +    QR A    +
Sbjct: 208 RHIEIQVLADHH-GNAVWLGERDCSMQRRHQKILEESPAPGLDPAAVEAIGQRCAHAC-R 265

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           AIG RG    +FL+     + +++E+N +
Sbjct: 266 AIGYRGAGTFEFLY--EDGQFYFIEMNTR 292


>gi|319950964|ref|ZP_08024836.1| acyl-CoA carboxylase alpha chain [Dietzia cinnamea P4]
 gi|319435386|gb|EFV90634.1| acyl-CoA carboxylase alpha chain [Dietzia cinnamea P4]
          Length = 695

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/147 (15%), Positives = 53/147 (36%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP  GG   G+  +     +P  L  +   + G       +++    T  
Sbjct: 155 AEEVGYPVLVKPSAGGGGKGMRRVADPAELPAALESARRESAGAFGDDTLFLERFVDTPR 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T   V         L+          P+ +  +   + + + A  A +++G
Sbjct: 215 HIEVQVLADTHGNVIHLGERECSLQRRHQKVIEEAPSALLDEATRERIGQAACDAARSVG 274

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+    +  + F++E+N +
Sbjct: 275 YVGAGTVEFIVSAHAPDEFFFMEMNTR 301


>gi|265750481|ref|ZP_06086544.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_33FAA]
 gi|263237377|gb|EEZ22827.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_33FAA]
          Length = 389

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 40/254 (15%), Positives = 76/254 (29%), Gaps = 15/254 (5%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A       F+V   +D D ++  V+A  KPD+    +     E         +  +
Sbjct: 39  AMQVADE-----FEVFSMLDGD-ALDAVVAKHKPDIIVPEIEAIRTERLYHLEQEGIQVV 92

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
           P   +          +  + + +                  ++   I  P V+KPL   S
Sbjct: 93  PSARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSLEELKEAAKEIGFPCVVKPLMSSS 151

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G  ++K    +          + GD   +        +             +      
Sbjct: 152 GKGQSLVKSADELEQAWHYGCEGSRGDIKELIIEE---FIKFDSEITLLTVTQKNGPTLF 208

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                 ++          PA I  +  KE QR+A     A+   GI   +F     +  V
Sbjct: 209 CPPIGHVQKGGDYRESFQPAHIDPEHLKEAQRMADKVTAALTGAGIWGVEFFLSHENG-V 267

Query: 258 FWLEINVQP---GM 268
           ++ E++ +P   GM
Sbjct: 268 YFSELSPRPHDTGM 281


>gi|167757325|ref|ZP_02429452.1| hypothetical protein CLORAM_02875 [Clostridium ramosum DSM 1402]
 gi|237735597|ref|ZP_04566078.1| acetyl-CoA carboxylase [Mollicutes bacterium D7]
 gi|167703500|gb|EDS18079.1| hypothetical protein CLORAM_02875 [Clostridium ramosum DSM 1402]
 gi|229381342|gb|EEO31433.1| acetyl-CoA carboxylase [Coprobacillus sp. D7]
          Length = 450

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 79/235 (33%), Gaps = 15/235 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           +++  V   L  D       G   E+     ++E   I +         +  +K  ++Q 
Sbjct: 64  KNILSVATALGCDAIHPGF-GFLSENSTFARLVEECGITFIGPSGDVIDMMGNKSMARQK 122

Query: 100 VSSCGVPVCP----SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL- 154
           +   GVPV P    S+   +   +  + I  P +IK   GG   G+     ++       
Sbjct: 123 MIEAGVPVVPGSDGSVNTLQEAKEVANQIGYPVLIKASAGGGGRGMRKAFSEEEFDDAYL 182

Query: 155 ----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                  + +   D  L +  ++   +   ++ D   +V  +            + +   
Sbjct: 183 TAKAEAKACFGDDDMYLEKLILNPKHIEFQILADNYGNVIHLGERDCSIQ----RRNQKM 238

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                   +   + +++   A  A +  G R     +++ D      +++E+N +
Sbjct: 239 IEEAPSKALTPLLRQKMGEDAVKAAKGAGYRNAGTIEYVLD-QDGNYYFIEMNTR 292


>gi|288819214|ref|YP_003433562.1| biotin carboxylase [Hydrogenobacter thermophilus TK-6]
 gi|116235002|dbj|BAF34940.1| biotin carboxylase [Hydrogenobacter thermophilus]
 gi|288788614|dbj|BAI70361.1| biotin carboxylase [Hydrogenobacter thermophilus TK-6]
 gi|308752796|gb|ADO46279.1| acetyl-CoA carboxylase, biotin carboxylase [Hydrogenobacter
           thermophilus TK-6]
          Length = 444

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/232 (18%), Positives = 81/232 (34%), Gaps = 7/232 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ R +   +     D      +G   E+     I+      +         L  DK+ 
Sbjct: 61  LDIPR-IMSAIEVSDADAVHPG-YGFLAENPRFAEIVSASNKIFIGPPSHVLELIGDKIM 118

Query: 96  SKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           SK+V    G+P+ P           +D+ + I  P VIK   GG   GI V++ ++ +  
Sbjct: 119 SKEVAKKVGIPLVPGSDGCVDIKEAIDTANRIGYPVVIKASAGGGGRGIRVVRNEKELRE 178

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            L  +             Y++   +    +    L      V         ++  +    
Sbjct: 179 KLPLAIEEAKVAFGDGRVYIEKYLINPKHIEVQVLADKYGHVISLGERECSIQRRNQKLI 238

Query: 213 HVLPAKIPLDIYKEVQRLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              P+    ++ ++    A     +AIG  G    +FL D    K +++E+N
Sbjct: 239 EEAPSISIDEVQRKQIEEAAVEFCKAIGYEGAGTVEFLMD-QDGKFYFMEMN 289


>gi|116252304|ref|YP_768142.1| propionyl-CoA carboxylase alpha subunit [Rhizobium leguminosarum
           bv. viciae 3841]
 gi|115256952|emb|CAK08046.1| putative propionyl-CoA carboxylase alpha subunit [Rhizobium
           leguminosarum bv. viciae 3841]
          Length = 673

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E       LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERASFCTELEKQGIIFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLGIIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               +IS     P +IK   GG   G+ +      +     ++ S           +++ 
Sbjct: 142 AHAEVISAGIGYPVMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDEATRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LAKAVDYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRVAA 317


>gi|110590387|pdb|2GPS|A Chain A, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli.
 gi|110590388|pdb|2GPS|B Chain B, Crystal Structure Of The Biotin Carboxylase Subunit, E23r
           Mutant, Of Acetyl-Coa Carboxylase From Escherichia Coli
          Length = 469

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A +  G K   +    DR +  VL                          A + 
Sbjct: 34  ALRILRACKRLGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 93

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 94  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKAETIRLMGDKVSAIAAMKKAGVPCVPG 153

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 154 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 213

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 214 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 269

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 270 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 312


>gi|28209905|ref|NP_780849.1| biotin carboxylase [Clostridium tetani E88]
 gi|28202340|gb|AAO34786.1| biotin carboxylase [Clostridium tetani E88]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI ++K+++ +   +  +             Y++       
Sbjct: 148 AEKIGYPVIIKASAGGGGRGIRIVKENEELIEAIDTAKKEALSAFGDDSMYMEKYIECPK 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L      +         ++  +       P   I  ++ +++   A  A + +G
Sbjct: 208 HVEIQILGDNYGNIVYLGERDCSIQRRNQKILEEAPCTVITQELREKMGDAAVRAAKYVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            +     +FL D  +   +++E+N +
Sbjct: 268 YKNAGTIEFLLDKSNN-FYFMEMNTR 292


>gi|49475886|ref|YP_033927.1| carbamoyl phosphate synthase large subunit [Bartonella henselae
           str. Houston-1]
 gi|49238694|emb|CAF27945.1| Carbamoyl-phosphate synthase large chain [Bartonella henselae str.
           Houston-1]
          Length = 1161

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 99/345 (28%), Gaps = 66/345 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           +A+L GG +         G+           A AL DAGF+   I         D D S 
Sbjct: 621 IAILGGGPN-------RIGQGIEFDYCCCHAAFALRDAGFEAIMINCNPETVSTDYDTSD 673

Query: 43  GLVLAHLKPDLAFNVLH----------------GNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T    + 
Sbjct: 674 RLYFESLTTEDVIAILETEQQKGELLGVIVQFGGQTPLKLAKALEQHNIPILGTSPDAID 733

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +      +   P               H +  P V++P        + +I+ 
Sbjct: 734 LAEDRDRFQKLLFKLNLTQPKNGIAHSVEQAHFIAHELGFPLVVRPSYVLGGRAMEIIRD 793

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIE---------LTCGVMGDASLD 188
           ++S+   L             +    D++     + G               V  D   D
Sbjct: 794 ERSLQNYLLESVPELVPENIKARYPNDKISQLNTLLGKNPLLFDTYLTEAIEVDIDCLCD 853

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E  V     +  E    S +S   LP      +I  E++R      QA+  RG+    
Sbjct: 854 GKETLVVGIMEHIEEAGIHSGDSACSLPVHTLSSEIVAELERQTKALAQALHVRGLMNVQ 913

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +        ++ LE+N +   T     P +A   G    ++   +
Sbjct: 914 YAI--KDGTIYVLEVNPRASRT----VPFVAKTIGRPIAKMATRI 952



 Score = 40.6 bits (93), Expect = 0.26,   Method: Composition-based stats.
 Identities = 34/308 (11%), Positives = 82/308 (26%), Gaps = 30/308 (9%)

Query: 2   AVL--MGGISSEREVSLSSGKACASALEDAG----FKVSQIDVDRS----------VGLV 45
           A+L  MGG ++     L++  +    L+  G    + V  I  +                
Sbjct: 85  ALLPTMGGQTA-----LNTALS----LKRMGILDRYHVEMIGANADAIDKAEDRALFRKA 135

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
           +A +  +   ++L          +                       +        +   
Sbjct: 136 MAKIGLETPRSMLANATELKEENRQKYAKKRNELKTQLFGDDLDKALEKLEHDWRHTEAD 195

Query: 106 PVCPSILVNRFTMDSQ-HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                I            +I  P +I+P       G  +          + +    +   
Sbjct: 196 RKQHYIAHATAKAVQALDIIGLPAIIRPSFTLGGTGGGIAYNRSEFYEIIERGLEASPTT 255

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           ++LIE+ V G +     +     D   I     +     +      +          +  
Sbjct: 256 EVLIEESVLGWKEYEMEVVRDKNDNCIIVCSIENIDPMGIHTGDSITVAPALTLTDKEYQ 315

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS 284
                   +  +     G S   F  +P + ++  +E+N  P ++  S     +   G+ 
Sbjct: 316 CMRNASIAVLREIGVETGGSNVQFAVNPENGRLIVIEMN--PRVSRSS--ALASKATGFP 371

Query: 285 FRELLLWM 292
             ++   +
Sbjct: 372 IAKVAAKL 379



 Score = 37.9 bits (86), Expect = 2.0,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFN 56
          SG     AL++ G+++  ++ + +                     V  ++AH +PD    
Sbjct: 29 SGTQACKALKEEGYRIILVNSNPATIMTDPELADATYIEPITPEIVAQIIAHERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93


>gi|325918552|ref|ZP_08180665.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas vesicatoria ATCC 35937]
 gi|325535237|gb|EGD07120.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Xanthomonas vesicatoria ATCC 35937]
          Length = 455

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V+  + ++   +  + S     +++    + +   +  
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHSEAALKAAIETTKSEAKAAFSNDQVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            +             I  ++  E+ ++   A 
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQ----RRHQKVVEEAPAPGITEELRAEIGKVCVDAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF     + +++E+N +
Sbjct: 265 IRIGYRGAGTFEFLF--EGGRFYFIEMNTR 292


>gi|310826343|ref|YP_003958700.1| pyruvate carboxylase [Eubacterium limosum KIST612]
 gi|308738077|gb|ADO35737.1| pyruvate carboxylase [Eubacterium limosum KIST612]
          Length = 1142

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/282 (12%), Positives = 76/282 (26%), Gaps = 37/282 (13%)

Query: 19  GKACASALEDAGFKVSQIDVDRS------------------------------VGLVLAH 48
                 A ++ G +   I                                   +  +   
Sbjct: 16  AIRIIRACQELGIQTVAIYAQEDKMSLFRSKADEAYLITGTTGPVEAYLNMDKIISLAKK 75

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D      +G   E+       E   I +            DK++SK V  S  VP  
Sbjct: 76  KEVDAIHPG-YGFLSENPEFARRCEEEGIAFIGPTHTMMEQMGDKIQSKIVAKSVNVPTI 134

Query: 109 PSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           P +     +       +     P ++K   GG   G+ +++ ++ +  +   + S     
Sbjct: 135 PGVEKPITSDREAAEFAKVAGYPIMLKAAAGGGGRGMRIVRDEKDLLKEYHSAMSEATKA 194

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 +V+        +    L      V         ++          P+    +  
Sbjct: 195 FGDGTIFVEKYLEEPKHIEVQILGDAYGNVVHLFERDCSIQRRHQKIIEFTPSLSISEEQ 254

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++          +A+  R     +FL D      +++E+N +
Sbjct: 255 RQAICADALKLAKAVNYRNAGTIEFLVDKKGDH-YFIEMNPR 295


>gi|254455284|ref|ZP_05068713.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Pelagibacter
           sp. HTCC7211]
 gi|207082286|gb|EDZ59712.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Pelagibacter
           sp. HTCC7211]
          Length = 445

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ ++ +++                + + +  + + + +  
Sbjct: 148 CKKIGFPVLIKASGGGGGKGMKIVHREEEFENLFSTAKSEAQKYFGNDEVYIEKFFQNPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++   +  V       S       +             +  +I K++        
Sbjct: 208 HIEVQILAGKNNVVHLHERDCSVQ-----RRHQKLIEETPSPVLNDEIRKDLFDRTVQMV 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG  G    +F++     K ++LE+N +
Sbjct: 263 SKIGYMGAGTVEFIY--EDGKFYFLEMNTR 290


>gi|254412405|ref|ZP_05026179.1| acetyl-CoA carboxylase, biotin carboxylase [Microcoleus
           chthonoplastes PCC 7420]
 gi|196180715|gb|EDX75705.1| acetyl-CoA carboxylase, biotin carboxylase [Microcoleus
           chthonoplastes PCC 7420]
          Length = 451

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 69/219 (31%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K+ +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQISFIGPSPEAMRAMGDKSTAKETMQRAGVPTVPGSEG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK---DQSIPLDLLQSSSWNHGDQL 166
            +   R  +     I  P +IK   GG   G+ ++        +       +    G+  
Sbjct: 138 LLSSEREAITLAKDIGYPVMIKATAGGGGRGMRLVPDESAMSRLFQAAQGEADAAFGNPG 197

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           L  +              A        +   +      +             +  ++ ++
Sbjct: 198 LYLEKFIVRPRHIEFQILADSYG--NVIHLGERDCSIQRRHQKLLEEAPSPALTPELREK 255

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A +A ++I   G    +FL D +    +++E+N +
Sbjct: 256 MGTAAVMAAKSINYVGAGTVEFLLDAMGN-FYFMEMNTR 293


>gi|158451299|gb|ABW39010.1| putative CAD trifunctional protein [Quentalia sp. JCR-2007]
          Length = 975

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     ILE   +    + I +   + D+     K       V    +
Sbjct: 435 TFGGQTALNCGVELQKAKILEKYNVSVLGTPIHSIVNTEDRKIFAEKINAIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 495 VTSVEEAVIAAKQIGYPVMARSAFSLGGLGSGFANNEEELRS--LAHQALSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENIDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 ALKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|119480925|ref|XP_001260491.1| carbamoyl-phosphate synthase, large subunit [Neosartorya fischeri
           NRRL 181]
 gi|119408645|gb|EAW18594.1| carbamoyl-phosphate synthase, large subunit [Neosartorya fischeri
           NRRL 181]
          Length = 1175

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 121 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 180

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 181 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIKTLETSEDRDLFAQALKEINIPIAESIA 240

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG    +  + +     +S +     Q+L+E+
Sbjct: 241 VNTVDEALKAAETVGYPIIVRSAYALGGLGSGFAENPEELKNLASRSLTLAP--QILVEK 298

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 299 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 357

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 358 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 409


>gi|332993528|gb|AEF03583.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas sp. SN2]
          Length = 696

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 46/143 (32%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P ++K   GG   G+  + K+      L  +   +          V+        + 
Sbjct: 151 MGYPVLLKAAAGGGGKGMRQVWKESEFSAALSAAKRESMASFGDEHMLVEKYLTRPRHVE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRG 242
                 T             ++          P    P +I +++   A  A +AI   G
Sbjct: 211 IQVFCDTHGNGVYLFERDCSVQRRHQKVIEEAPAPNFPANIRQQMGEAALQAAKAINYVG 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL+D      +++E+N +
Sbjct: 271 AGTVEFLYDE-DGSFYFMEMNTR 292


>gi|288957916|ref|YP_003448257.1| biotin carboxylase [Azospirillum sp. B510]
 gi|288910224|dbj|BAI71713.1| biotin carboxylase [Azospirillum sp. B510]
          Length = 446

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 36/217 (16%), Positives = 70/217 (32%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++E     +         +  DK+ +K+ V   G+PV P    
Sbjct: 77  AIHPGIGFLSENAQFAEMVEEHGFTFIGPTPEHIRIMGDKVTAKKTVMEQGLPVVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +          H    P +IK   GG   G+ V +    +      + +         E
Sbjct: 137 PVSTLEEAEKVAHETGYPVLIKAAAGGGGKGMKVARNPDQLKEAYQFARAEARAAFGNDE 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  T             ++          P+     +    + 
Sbjct: 197 VYLEKYLGRPRHIEIQLLGDTHGTCVHFGERDCSVQRRHQKVIEEAPSPALNTEQRAYIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            LA     AIG RG+   +FL+     + +++E+N +
Sbjct: 257 ELAAKTAAAIGYRGVGTMEFLY--EDGQFYFIEMNTR 291


>gi|109114629|ref|XP_001111823.1| PREDICTED: acetyl-CoA carboxylase 1-like isoform 6 [Macaca mulatta]
          Length = 2383

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 302 LRMDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 361

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 362 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 418

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 419 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 476

Query: 264 VQ 265
            +
Sbjct: 477 PR 478


>gi|34398189|gb|AAQ67184.1| CAD [Meghyperus sudeticus]
          Length = 1299

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 368 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPDYVEQVIKAERPNGVLL 427

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + V      V    +
Sbjct: 428 TFGGQTALNCGVELDKAGVFKKYNVKILGTPIQSIIETEDRKVFAEKVGEIGEKVAPSEA 487

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG         +   +L   +  + +QL+I++
Sbjct: 488 VYSVGEALEAAERLGYPVMARAAFSLGGLGSGFANNTTELT--VLAQQALAYSNQLIIDK 545

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 546 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 604

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 605 AIKVIRHFGVIGECNIQYALNPKSEEYYIVEVNAR--LSRSS--ALASKATGYPLAYVAA 660

Query: 291 WM 292
            +
Sbjct: 661 KL 662


>gi|257425730|ref|ZP_05602154.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257428391|ref|ZP_05604789.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257431029|ref|ZP_05607408.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257433715|ref|ZP_05610073.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257436630|ref|ZP_05612674.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282914411|ref|ZP_06322197.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|282924706|ref|ZP_06332374.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|293503486|ref|ZP_06667333.1| biotin carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|293510503|ref|ZP_06669209.1| biotin carboxylase [Staphylococcus aureus subsp. aureus M809]
 gi|293531043|ref|ZP_06671725.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|257271424|gb|EEV03570.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           55/2053]
 gi|257275232|gb|EEV06719.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           65-1322]
 gi|257278232|gb|EEV08874.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           68-397]
 gi|257281808|gb|EEV11945.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257283981|gb|EEV14104.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           M876]
 gi|282313541|gb|EFB43936.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C101]
 gi|282321592|gb|EFB51917.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M899]
 gi|290920311|gb|EFD97377.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus M1015]
 gi|291095152|gb|EFE25417.1| biotin carboxylase [Staphylococcus aureus subsp. aureus 58-424]
 gi|291466867|gb|EFF09387.1| biotin carboxylase [Staphylococcus aureus subsp. aureus M809]
          Length = 453

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E   +   +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKIAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|189423505|ref|YP_001950682.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter lovleyi
           SZ]
 gi|189419764|gb|ACD94162.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter lovleyi
           SZ]
          Length = 394

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/295 (13%), Positives = 77/295 (26%), Gaps = 32/295 (10%)

Query: 20  KACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVLH 59
           K  A   +  G +V  +D                   +DR  +  V+   +PDL    + 
Sbjct: 24  KEVALEAQRLGVEVIAVDRYADAPAMQVAHRSHVISMLDREALRRVIEQERPDLIVPEIE 83

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
                  L         IP   +  L       +  + + +                   
Sbjct: 84  AIDTVFLLELEQAGQRVIPTARAANLTMNREGIRRLAAEELGLPT-APYAFASSAAELRA 142

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   I  P V+KP+   S  G  V+K    +         +           V       
Sbjct: 143 AADSIGFPCVVKPIMSSSGKGQSVVKTAAEVDTA----WQYAMDGARGASDTVIIEGFID 198

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
                  L V              ++          P  +      E +R A +   A+G
Sbjct: 199 FDYEITQLTVRHAGGTSFCPPIGHVQIKGDYHESWQPMAMSPAALAEARRQAEMVTTALG 258

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL-LLWMV 293
             GI   +         V + E++ +P      +   ++     S  EL +  ++
Sbjct: 259 GYGIFGVELFI--KGDTVLFSEVSPRP--HDTGMVTMISQ--NLSQFELHVRAIL 307


>gi|34398163|gb|AAQ67171.1| CAD [Bombylius major]
          Length = 1278

 Score = 46.8 bits (109), Expect = 0.004,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   + + ++ +                       V  V+   +P+    
Sbjct: 370 SGSQAIKALKEEKIQTNLVNPNIATVQTSKGLADKVYFLPLTSEYVEQVIKAERPNGVLL 429

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + +      V    +
Sbjct: 430 TFGGQTALNCGLELEKAGVFSKYNVKILGTPITSIIETEDRKIFAERIGEIGEKVAPSEA 489

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      ++S   +  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 490 VYSIAEALNSAERLGYPVMARAGFSLGGLGSGFANNREEL--KALAQQALAHSNQLIIDK 547

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 548 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 606

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 607 AIKVIRHFGVVGECNIQYALCPHTEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 662

Query: 291 WM 292
            +
Sbjct: 663 KL 664


>gi|321265065|ref|XP_003197249.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Cryptococcus gattii WM276]
 gi|317463728|gb|ADV25462.1| Carbamoyl-phosphate synthase arginine-specific large chain,
           putative [Cryptococcus gattii WM276]
          Length = 1154

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL ++  +   I+ +                       V  VL   +PD    
Sbjct: 95  SGSQAIKALRESNIETILINPNIATIQTSHHLASEIYFLPVTADYVAYVLEKERPDGILL 154

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G    +         +LE L +    + I    +S D+    Q ++   +P   S  
Sbjct: 155 TFGGQSALNVGIQLDKMGVLERLGVKVLGTPIRTLEVSEDRDLFVQALNEIEIPAAQSTA 214

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   I  P +++       LG      ++ +    L + S +   Q+LIE+
Sbjct: 215 VSTIQAALDAAKEIGYPIILRSAFSLGGLGSGFAHDEEELRN--LAAKSLSLSPQVLIEK 272

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +  D Y  ++  
Sbjct: 273 SLKGW-KEVEYEVVRDAADNTIICCNMENFDPLGTHTGDSIVVAPSQTLTDDEYHMLRSA 331

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  DP+SR    +E+N +  ++  S     +   GY   
Sbjct: 332 AIKIVRHVGVVGECNVQYALDPVSRDYRVIEMNAR--LSRSS--ALASKATGYPLA 383


>gi|294055394|ref|YP_003549052.1| acetyl-CoA carboxylase, biotin carboxylase [Coraliomargarita
           akajimensis DSM 45221]
 gi|293614727|gb|ADE54882.1| acetyl-CoA carboxylase, biotin carboxylase [Coraliomargarita
           akajimensis DSM 45221]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLA-----FNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L   +   A      + +H   G   E+       E   I +    
Sbjct: 47  EAICIGPPASNQSYLKGDRIIAAAEIADVDAIHPGYGFLAENADFAEQCEKCNIKFVGPS 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A     DK +++++     VPV P     +      +     I  P +IK + GG   
Sbjct: 107 SYAIINFGDKAKAREMAVKAKVPVIPGSEGTVDNETDALKCAESIGFPVIIKAVAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+       S   +   + S           Y++        +    L      V     
Sbjct: 167 GMRTAHNSASFKKEYNSARSEAEAAFGNGAVYIEKFLEAPRHIEIQVLGDQHGNVIHLGE 226

Query: 200 YSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++          P   I  D  +++ + A    +++   G    +FL D  ++  +
Sbjct: 227 RDCSVQRRHQKVVEEAPSPFISDDTRQKMGKDAVKLAKSVNYEGAGTIEFLMDE-NQNYY 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FIEMNTR 292


>gi|109114635|ref|XP_001111553.1| PREDICTED: acetyl-CoA carboxylase 1-like isoform 1 [Macaca mulatta]
          Length = 2288

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 207 LRMDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 266

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 267 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 323

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 324 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 381

Query: 264 VQ 265
            +
Sbjct: 382 PR 383


>gi|58262038|ref|XP_568429.1| hypothetical protein CNM01170 [Cryptococcus neoformans var.
           neoformans JEC21]
 gi|134118341|ref|XP_772184.1| hypothetical protein CNBM1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50254792|gb|EAL17537.1| hypothetical protein CNBM1030 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|57230602|gb|AAW46912.1| conserved hypothetical protein [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 1155

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 47/296 (15%), Positives = 95/296 (32%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL ++  +   I+ +                       V  VL   +PD    
Sbjct: 96  SGSQAIKALRESNIETILINPNIATIQTSHHLASEIYFLPVTADYVAYVLEKERPDGILL 155

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G    +         +LE L +    + I    +S D+    Q ++   +P   S  
Sbjct: 156 TFGGQSALNVGIQLDKMGVLERLGVKVLGTPIRTLEVSEDRDLFVQALNEIEIPAAQSTA 215

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   I  P +++       LG      ++ +    L + S +   Q+LIE+
Sbjct: 216 VSTIQAALDAAKEIGYPIILRSAFSLGGLGSGFAHDEEELRN--LAAKSLSLSPQVLIEK 273

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I     + +     ++  +        +  D Y  ++  
Sbjct: 274 SLKGW-KEVEYEVVRDAADNTIICCNMENFDPLGTHTGDSIVVAPSQTLTDDEYHMLRSA 332

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  DP+SR    +E+N +  ++  S     +   GY   
Sbjct: 333 AIKIVRHVGVVGECNVQYALDPVSRDYRVIEMNAR--LSRSS--ALASKATGYPLA 384


>gi|319944590|ref|ZP_08018858.1| acetyl-CoA carboxylase, biotin carboxylase [Lautropia mirabilis
           ATCC 51599]
 gi|319742127|gb|EFV94546.1| acetyl-CoA carboxylase, biotin carboxylase [Lautropia mirabilis
           ATCC 51599]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + S+   +  + S           Y++       
Sbjct: 149 ARKVGYPVIIKAAGGGGGRGMRVVHDEASLLGSVATTRSEAQAAFNNGSVYMERYLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  +  ++  ++      A ++IG
Sbjct: 209 HIEIQVLADEHGNAIYLGERDCSMQRRHQKVIEEAPAPGVSRELIHKIGMRCVEACKSIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + F++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|238751409|ref|ZP_04612902.1| Biotin carboxylase [Yersinia rohdei ATCC 43380]
 gi|238710467|gb|EEQ02692.1| Biotin carboxylase [Yersinia rohdei ATCC 43380]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSVADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRAETIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D+ +   +  + +     +
Sbjct: 134 SDGPLSDDTTKNKAFAKRIGYPVIIKASGGGGGRGMRVVRHDKDLEQSINMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   ++ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHIEIQILADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  + +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 SETRRYIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|158451117|gb|ABW38919.1| putative CAD trifunctional protein [Biston betularia]
          Length = 976

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + V++    V    +
Sbjct: 436 TFGGQTALNCGVELQKARIFEKYNVAVLGTPIQSIVDTEDRKIFAEKVNAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEAIVAAKQIGYPVMARSAFSLGGMGSGFANNEEELKS--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAHDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIKHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|172046631|sp|Q3AUF2|PURT_SYNS9 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 392

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       ++  V+   +PD+    +
Sbjct: 17  GKEVAIAAQRLGCRVIACDRYANAPAMQVADTAEVFQMTDATALKEVVQRHRPDVVIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  IP   +          +  +   +                  
Sbjct: 77  EALAVEALAELEQDGITVIPTARATAFTMNRDQIRDLASGELGLHT-ARFAYASNAAELK 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++  + +      + +   G  +Q+++E++++   
Sbjct: 136 KVAAPLGWPVVVKPVMSSSGKGQSVVQTPEQLDQAWEAAMANARGTSNQVIVEEFLEFDL 195

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T    P                    PA++     ++ Q +A     
Sbjct: 196 EITLLTIRQRNGETLFCPPIGHEQE-----RGDYQCSWQPAQMSDAQLQQAQTMARTVTD 250

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +G  G+   +F       +V + E++ +P
Sbjct: 251 NLGGAGLFGVEFFLC--GNEVIFSELSPRP 278


>gi|159480080|ref|XP_001698114.1| methylcrotonoyl-CoA carboxylase alpha subunit [Chlamydomonas
           reinhardtii]
 gi|158273913|gb|EDO99699.1| methylcrotonoyl-CoA carboxylase alpha subunit [Chlamydomonas
           reinhardtii]
          Length = 764

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 45/147 (30%), Gaps = 11/147 (7%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCG 180
            P ++K + GG   G+ +      +   +  +       ++    LL         +   
Sbjct: 215 YPLLVKAVSGGGGKGMKLATGPHDLWEAITSARREALASFSDDRLLLERYIQRPRHVEVQ 274

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V  D       +            K         LP +    I +   R A       G 
Sbjct: 275 VFADGHGGAVYLFDRDCSVQRRHQKIIEEAPAPGLPEEFHRHIGEAAVRAARAV----GY 330

Query: 241 RGISRSDFLFDPLS--RKVFWLEINVQ 265
           R     +F+ D  S  ++ +++E+N +
Sbjct: 331 RNAGTVEFIVDTDSAEQQFYFMEMNTR 357


>gi|91217905|ref|ZP_01254859.1| acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
 gi|91183998|gb|EAS70387.1| acetyl-CoA carboxylase, biotin carboxylase [Psychroflexus torquis
           ATCC 700755]
          Length = 400

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 37/231 (16%), Positives = 83/231 (35%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +   L  D      +G   E+      +E  EI +      A  +  DK+ +K+ 
Sbjct: 63  DKIIEIAKSLSVDGIHPG-YGFLSENADFAEKVEQNEIAFIGPKSHAIRIMGDKLSAKET 121

Query: 100 VSSCGVPVCPSIL----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           V +  +P+ P I          ++  + I  P +IK   GG   G+ V++++  +   + 
Sbjct: 122 VKNYDIPMVPGIDEAVTNTAKAIEIANEIGYPILIKASAGGGGKGMRVVEEEAKLEEQMK 181

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
           ++ S           +++    +   +    L  T   V         ++          
Sbjct: 182 RAISEAESAFGNGAVFIEKYVSSPRHIEIQILADTHGNVLHLFERECSVQRRHQKVVEEA 241

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+ I    + +++ + A    ++    G    +FL D      ++LE+N +
Sbjct: 242 PSTILTPQLREKMGQAAIDVAKSCDYVGAGTVEFLMDEKKN-FYFLEMNTR 291


>gi|78185881|ref|YP_378315.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9902]
 gi|78170175|gb|ABB27272.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9902]
          Length = 398

 Score = 46.4 bits (108), Expect = 0.004,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 79/270 (29%), Gaps = 30/270 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       ++  V+   +PD+    +
Sbjct: 23  GKEVAIAAQRLGCRVIACDRYANAPAMQVADTAEVFQMTDATALKEVVQRHRPDVVIPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  IP   +          +  +   +                  
Sbjct: 83  EALAVEALAELEQDGITVIPTARATAFTMNRDQIRDLASGELGLHT-ARFAYASNAAELK 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG--DQLLIEQYVDGIE 176
                +  P V+KP+   S  G  V++  + +      + +   G  +Q+++E++++   
Sbjct: 142 KVAAPLGWPVVVKPVMSSSGKGQSVVQTPEQLDQAWEAAMANARGTSNQVIVEEFLEFDL 201

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T    P                    PA++     ++ Q +A     
Sbjct: 202 EITLLTIRQRNGETLFCPPIGHEQE-----RGDYQCSWQPAQMSDAQLQQAQTMARTVTD 256

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +G  G+   +F       +V + E++ +P
Sbjct: 257 NLGGAGLFGVEFFLC--GNEVIFSELSPRP 284


>gi|330821638|ref|YP_004350500.1| urea amidolyase urea carboxylase subunit [Burkholderia gladioli
           BSR3]
 gi|327373633|gb|AEA64988.1| urea amidolyase urea carboxylase subunit [Burkholderia gladioli
           BSR3]
          Length = 1206

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 56/178 (31%), Gaps = 14/178 (7%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG  +G+ + +    +       +     +      +V+        +
Sbjct: 150 RIGYPVMLKSTAGGGGIGMSLCRDAGQLAAAFETVARLGAANFANAGVFVEKYVEAARHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCR 241
                      V         ++  +       PA    D     +   A    +A+   
Sbjct: 210 EVQIFGDGRGEVIALGERDCSVQRRNQKVIEETPAPGLTDAERAGLHAGAVRLAKAVDYA 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA---GYSFRELLLWMVEDA 296
                +++FD  +R+ ++LE+N +              +      +  +L+ WM+ +A
Sbjct: 270 SAGTVEYVFDAEARRFYFLEVNTR----------LQVEHCVTEEVTGTDLVEWMILEA 317


>gi|294013307|ref|YP_003546767.1| biotin carboxylase [Sphingobium japonicum UT26S]
 gi|292676637|dbj|BAI98155.1| biotin carboxylase [Sphingobium japonicum UT26S]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 70/217 (32%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I+E   I +         +  DK+ +K+   + G+P+ P    
Sbjct: 78  AIHPGYGFLSENAQFAEIVEAHNIAFVGPKPEHIRIMGDKVEAKRTAGALGLPLVPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +    I  P +IK   GG   G+ V+  +  +   + Q+ S          
Sbjct: 138 AISDIAEAKEIAARIGYPVLIKAASGGGGRGMKVVPSEDLLETSMKQAGSEAKAAFGDDT 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +                     L+          P+ +        + 
Sbjct: 198 VYMEKYLGNPRHIEFQVFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVLSAAERDRMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +   A   +G RG    +FL+     + +++E+N +
Sbjct: 258 EVVRKAMADMGYRGAGTIEFLW--EDGEFYFIEMNTR 292


>gi|259502494|ref|ZP_05745396.1| pyruvate carboxylase [Lactobacillus antri DSM 16041]
 gi|259169520|gb|EEW54015.1| pyruvate carboxylase [Lactobacillus antri DSM 16041]
          Length = 1143

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGL------------------VLAHLKPDLAF----- 55
                 A  + G K   +                          + A+L  D        
Sbjct: 14  ATRVVRACHELGVKAVAVYPKEDEYSAHRFAADEAYLIGQGEKPIDAYLDIDEIIRVAKE 73

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+  +        + +         +  +K+ +K+V    G+   P
Sbjct: 74  SGAEAVHPGYGFLAENADLAQACADNGLKFIGPKSEHLRMFGNKLEAKRVAVEAGLKPIP 133

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                I       D  H    P ++K   GG   G+ +I  DQ +  +  Q+        
Sbjct: 134 GLSGDIKDVEQVRDFAHQYGYPIMVKAANGGGGRGMRIINDDQELTDEFDQARDEALKSF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
              E YV+        +    +      V         ++          P+ +   +  
Sbjct: 194 GSSEMYVEKDVQEPKHIEVQVIADEHGHVMHLFERDCSVQRRHQKVIEFAPSVVLSPERR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            EV  +A    +++  +  +  +FL  P   + +++E+N +
Sbjct: 254 AEVCNMAVKLMKSVHYQNAATIEFLETP--DQFYFIEVNPR 292


>gi|237736356|ref|ZP_04566837.1| biotin carboxylase [Fusobacterium mortiferum ATCC 9817]
 gi|229421398|gb|EEO36445.1| biotin carboxylase [Fusobacterium mortiferum ATCC 9817]
          Length = 448

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/221 (16%), Positives = 82/221 (37%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+    +I E   I +            DK  ++    +  VP+     +
Sbjct: 77  AIHPGYGFLSENAKFASICEEHNITFIGPRPECITKMGDKATARATAIANNVPLTNGTGI 136

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            R   +++      I+ P +IK   GG   G+ + + D+ + ++++ + +     + + D
Sbjct: 137 VRSISEAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELEMNIVAAQTEAGAAFGNPD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +   +   +   ++GD   +V  +            K      +  LP     ++ 
Sbjct: 197 VYIEKFVENPRHIEIQILGDKYGNVIYLGERDCSIQRRHQKLIEEAPSFSLPY----EVR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +   A    +AI        +FL D    K +++E+N +
Sbjct: 253 KAMGEAAVTLAKAINYDSAGTLEFLVD-KDNKFYFMEMNTR 292


>gi|41408411|ref|NP_961247.1| AccA1 [Mycobacterium avium subsp. paratuberculosis K-10]
 gi|41396767|gb|AAS04630.1| AccA1 [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 671

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/187 (14%), Positives = 60/187 (32%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IKP  GG   G+ ++++   +   L+ +             +++   L   
Sbjct: 148 ADEIGYPVLIKPSAGGGGKGMRLVEEPGRLREALVGARREAASSFGDDTLFLERFMLRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +   +    +   A    +++ 
Sbjct: 208 HIEVQILADAHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPETRARIGAAACNTARSVD 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G    +F+       + F++E+N       P +T         A  G    +L+ W +
Sbjct: 268 YVGAGTVEFIVSADRPDEFFFMEMNTRLQVEHP-VTE--------AVTGL---DLVEWQL 315

Query: 294 EDASCLR 300
             A+  +
Sbjct: 316 RVAAGEK 322


>gi|34557652|ref|NP_907467.1| acetyl-CoA carboxylase subunit A [Wolinella succinogenes DSM 1740]
 gi|34483369|emb|CAE10367.1| PUTATIVE PYRUVATE CARBOXYLASE A SUBUNIT [Wolinella succinogenes]
          Length = 473

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/253 (15%), Positives = 84/253 (33%), Gaps = 30/253 (11%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
           +G   E+ L    +    + +        A   DK  +++++   G+PV P         
Sbjct: 81  YGFLSENALFAKKVAEAGLVWIGPNSEVIAKMGDKNAAREIMQRHGIPVVPGTEPLNKES 140

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLI 168
                     I  P ++K   GG   GI V++K++ +              + + D  + 
Sbjct: 141 MESIKRHARRIGYPVILKASSGGGGRGIRVVQKEEELEDSFNACKREAMAFFKNDDVFME 200

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   ++ D   +V  +            +             +  D+ + + 
Sbjct: 201 KYVQNPKHIEFQILADNYGNVIHLMERDCSIQ----RRHQKLVEIAPSPTMSEDLRRRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYS 284
            +A  A +A G       +FL D  +   +++E+N +     G+T            G  
Sbjct: 257 AVAVAAAKATGYSNAGTVEFLVDDYNN-FYFMEMNTRIQVEHGVTE--------EITGL- 306

Query: 285 FRELLLWMVEDAS 297
             +L+   +  AS
Sbjct: 307 --DLIGRQIRIAS 317


>gi|307243666|ref|ZP_07525806.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus stomatis DSM 17678]
 gi|306492875|gb|EFM64888.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Peptostreptococcus stomatis DSM 17678]
          Length = 474

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/221 (13%), Positives = 70/221 (31%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E+  I +        A+  DK  SK+++   GVPV      
Sbjct: 100 AIHPGFGFLSENPGFARMCEVYNIKFIGPTSRVMAMMGDKEVSKKMMKEAGVPVVEGSDG 159

Query: 114 NRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-----D 164
               ++        +  P +IK   GG   G+ +++    +      +            
Sbjct: 160 VVENLEEAKEVLERLGLPVIIKARSGGGGKGMRLVEDMDDLKRQFDSARKEAQNAFGDSG 219

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   +M D   ++  +                       P  +   I 
Sbjct: 220 VYIEKFIKSPRHIEVQLMADEHGNIIHLGARDCSLQ----MNHQKVIEEAPPEGVDHAIL 275

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++   +  A +++    +   ++L D      +++E+N +
Sbjct: 276 NQLYETSIRAAKSVSYTSVGTIEYLLD-QDGSYYFMEMNTR 315


>gi|225076140|ref|ZP_03719339.1| hypothetical protein NEIFLAOT_01172 [Neisseria flavescens
           NRL30031/H210]
 gi|224952483|gb|EEG33692.1| hypothetical protein NEIFLAOT_01172 [Neisseria flavescens
           NRL30031/H210]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEEERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|86131471|ref|ZP_01050069.1| Biotin carboxylase [Dokdonia donghaensis MED134]
 gi|85817916|gb|EAQ39084.1| Biotin carboxylase [Dokdonia donghaensis MED134]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/216 (13%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E  +I +  +     +   DK  +K+ + + GVP  P     I   
Sbjct: 82  YGFLSENAKFSKICEEHDIKFIGASAEMISKMGDKATAKETMKAAGVPCVPGSDGIIKDF 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                       P ++K   GG   G+  + K++ +      +       + +    + +
Sbjct: 142 EECQKLAIETGYPVMLKATAGGGGKGMRAVWKEEDLLKAWEGARQESAAAFGNDGMYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++GD++     ++           +     +       +  ++ + +  
Sbjct: 202 LIEEPRHIEIQIVGDSTGKACHLSERDCSVQ----RRHQKLTEETPSPFMTDELRERMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + I   G    +FL D      +++E+N +
Sbjct: 258 AAVKAAEFINYEGAGTVEFLVDKHRN-FYFMEMNTR 292


>gi|329925226|ref|ZP_08280169.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
 gi|328940059|gb|EGG36392.1| ATP-grasp domain protein [Paenibacillus sp. HGF5]
          Length = 391

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 16/212 (7%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           LS +K + KQ     GV       +   +    +  ++SPP + K + GG+S GI+ +  
Sbjct: 99  LSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPVIFKAVDGGASKGIVKVAD 158

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +             D  ++E++++G E         +    +  +P  DF  Y    
Sbjct: 159 MAHVEYAFETVRKDTKLDFFIVEEFIEGTEFGAQAFVYDN--QIQFIMPHGDFVFYGDTG 216

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLSRKVFWLEINVQ 265
             +   H +P ++P ++ +++      + +A+     +  +DF+       V+ LEI  +
Sbjct: 217 --VPIGHYVPYELPEEVQQDLFSQLKQSIEALELNHCAINADFIL--KDGHVYVLEIGGR 272

Query: 266 PGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
            G T     PE+ + + G+ + E    +++ A
Sbjct: 273 AGAT---CLPELVSTFYGFDYYE---QIIKAA 298


>gi|319639464|ref|ZP_07994213.1| acetyl-CoA carboxylase [Neisseria mucosa C102]
 gi|317399230|gb|EFV79902.1| acetyl-CoA carboxylase [Neisseria mucosa C102]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEEERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|295695397|ref|YP_003588635.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus tusciae DSM
           2912]
 gi|295410999|gb|ADG05491.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus tusciae DSM
           2912]
          Length = 446

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 72/248 (29%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     +     I +   
Sbjct: 47  EAYCIGPTPSKQSYLHIASIMSLATKTGVDAIHPG-YGFLAENSDFAEVCNACNITFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              A     DK  +K+ +   GVP  P     I      +     I  P +IK   GG  
Sbjct: 106 PPSAIEQMGDKSVAKETMKRAGVPTVPGTDGLIASTEEALRVAEQIGYPVIIKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+      + +   +  + +           Y++ +      +    +           
Sbjct: 166 KGMRTAGTPEELAKGIEMARTEAETAFGNPGVYLEKLVQEPRHVEIQIMADRHGNAVYLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P  +   ++ +E+   A  A  A+G  G    +FL D    K 
Sbjct: 226 ERDCSIQRRHQKLIEEAPCPVLTPELRREMGEAAVRAALAVGYVGAGTVEFLLD-KDGKF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|90417344|ref|ZP_01225270.1| acetyl-CoA carboxylase, biotin carboxylase, putative [marine gamma
           proteobacterium HTCC2207]
 gi|90330929|gb|EAS46192.1| acetyl-CoA carboxylase, biotin carboxylase, putative [marine gamma
           proteobacterium HTCC2207]
          Length = 671

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 49/144 (34%), Gaps = 2/144 (1%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   G+ ++     +   +  + +         E  ++   +    +
Sbjct: 152 KIPLPLMVKAAAGGGGRGMRLVYDQADLANAIKLARAEAESAFGSGELILEQAIIQPRHV 211

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCR 241
                  +             ++          P   +  ++ +++ R A  A +++  R
Sbjct: 212 EIQVFADSFGNTVHLGERDCSVQRRHQKVIEEAPCPIMTSELREQMGRSAIDAAKSVHYR 271

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G    +FL    S   ++LE+N +
Sbjct: 272 GAGTVEFLL-ESSGAFYFLEMNTR 294


>gi|218526238|gb|ACK86526.1| carbamoyl-phosphate synthase [Palpares libelloides]
          Length = 723

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 133 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 192

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + ++     V    +
Sbjct: 193 TFGGQTALNCGVELEKANVFAKYGCKILGTPIQSIIETEDRKMFAEKINEIGEKVAPSAA 252

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L S +  H +QL+I++
Sbjct: 253 VYSVEEALDAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLRS--LASQALAHSNQLIIDK 310

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 311 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTA 369

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 370 AIKVIRHFKVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 425

Query: 291 WM 292
            +
Sbjct: 426 KL 427


>gi|124485282|ref|YP_001029898.1| hypothetical protein Mlab_0457 [Methanocorpusculum labreanum Z]
 gi|124362823|gb|ABN06631.1| protein of unknown function DUF201 [Methanocorpusculum labreanum Z]
          Length = 357

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 70/248 (28%), Gaps = 13/248 (5%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLH--GNFGEDGLVQAILELLEI 77
           +  A++   AG+ V  +D       ++ + K  LAF+ L       E+ +    ++ +  
Sbjct: 12  RHVAASASRAGYDVYAVD-HFCDQDLIWYTKDHLAFDELDELPFAVEEMMETHDIDHVVT 70

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
                 +  S          +     G        +             P ++K L G  
Sbjct: 71  TSGAELLEISNRLGTPAHIAERFMDKGKTQDFFEDLGAPVPKRLGPGEYPAMMKTLSGAG 130

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
                 +  D            +      + ++ +DG   +       + D         
Sbjct: 131 GWRNACVHSDAEREA----WEEFADYAPCMAQEPIDGQPASVS--CLGTGDAALALCANE 184

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                    +   S  + P K PL           +A    GC G    DF+      + 
Sbjct: 185 QILRGGDSCAYAFSGSLTPCKHPLAERMMELAEQIIAES--GCVGSVGVDFVLT--DDEA 240

Query: 258 FWLEINVQ 265
           + +EIN +
Sbjct: 241 YAIEINPR 248


>gi|90419572|ref|ZP_01227482.1| acetyl/propionyl-CoA carboxylase alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90336509|gb|EAS50250.1| acetyl/propionyl-CoA carboxylase alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 671

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/286 (13%), Positives = 79/286 (27%), Gaps = 35/286 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   +    +    L   K          +      +G   E      +LE   I +   
Sbjct: 47  EAVHVGPSPAGESYLVAEKILEACRATGAEAVHPG-YGFLSERASFCELLEENGIVFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM----DSQHLISPPYVIKPLKGGSS 138
              A     DK+ SK      GV + P  +               I  P +IK   GG  
Sbjct: 106 KPKAIRAMGDKIESKLFAEKAGVNIVPGHMGIIEDPAEAVRIAGEIGYPVMIKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ +   D        ++ S           +++   +    +    L  +        
Sbjct: 166 KGMRIAWNDAECRDGFDRARSEASSSFGDDRVFIEKFIVDPRHIEIQVLADSHGNAIHLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++  +       P+     +  + +   A    QA+  +     +F+ D      
Sbjct: 226 ERECSIQRRNQKVVEEAPSPYLDAETRRAMGEQAVALAQAVDYQSAGTVEFIVDAERN-F 284

Query: 258 FWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDAS 297
           ++LE+N +              +       G    +L+  M+  A+
Sbjct: 285 YFLEMNTR----------LQVEHPVTELVTGI---DLVEQMIRVAA 317


>gi|89902121|ref|YP_524592.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodoferax
           ferrireducens T118]
 gi|89346858|gb|ABD71061.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodoferax
           ferrireducens T118]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +      +  +  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFQFIGPTPESIRMMGDKVSAKQAMIKAGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                          +  P +IK   GG   G+ V+  + ++   +  + +         
Sbjct: 137 ELPDDPVQVRRIAKAVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTMTKAEAGAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L                ++          P   I   + + +
Sbjct: 197 AVYLEKFLQNPRHIEIQILADKYRNAVYLGERDCSMQRRHQKVLEEAPAPGIARKLIERL 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + IG RG    +FL+     + +++E+N +
Sbjct: 257 GDRCVSACKKIGYRGAGTFEFLY--EDGEFYFIEMNTR 292


>gi|198468417|ref|XP_001354698.2| GA14996 [Drosophila pseudoobscura pseudoobscura]
 gi|198146404|gb|EAL31753.2| GA14996 [Drosophila pseudoobscura pseudoobscura]
          Length = 2238

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ ++G +   I+ +                       V  V+   +P+    
Sbjct: 419 SGSQAIKAMRESGIQTVLINPNIATVQTSKGMADKCYFLPLTPHYVEEVIKSERPNGVLL 478

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    Q V+     V    +
Sbjct: 479 TFGGQTALNCGVELDRAGVFEKYNVRILGTPIQSIIETEDRKLFAQRVNDIGEQVAPSEA 538

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG      +Q +    L   +  H  QL++++
Sbjct: 539 VYSVAEALEAAGRLGYPVMARAAFSLGGLGSGFANNEQELEN--LAEQALAHSSQLIVDK 596

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y+ ++  
Sbjct: 597 SLKGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGESIVVAPSQTLSDREYQMLRNT 655

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 656 ALKVIRHLGVVGECNIQYALCPHSEQFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 711

Query: 291 WM 292
            +
Sbjct: 712 KL 713


>gi|194245486|gb|ACF35352.1| carbamoylphosphate synthetase [Metrius contractus]
          Length = 857

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 72  SGSQAIKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 131

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I A   + D+      +S     V    +
Sbjct: 132 TFGGQTGLNCGVELQRAGVFEKYGVRILGTPIDAIIDTEDRKIFSDRISEIGEKVAPSCA 191

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 192 VYSVQEAIDAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 249

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 250 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYNLLRTT 308

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 309 AINVIKHFGVVGECNIQYAVNPYAEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 364

Query: 291 WM 292
            +
Sbjct: 365 KL 366


>gi|325135640|gb|EGC58257.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M0579]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 177 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 236

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 237 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 296

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 297 YRGAGTFEFLY--EDGEFFFIEMNTR 320


>gi|319796248|ref|YP_004157888.1| phosphoribosylglycinamide formyltransferase 2 [Variovorax paradoxus
           EPS]
 gi|315598711|gb|ADU39777.1| phosphoribosylglycinamide formyltransferase 2 [Variovorax paradoxus
           EPS]
          Length = 399

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 79/281 (28%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S    +  ++   KP L    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYENAPGQQVAHHARTITMSDPAQLKALIEAEKPMLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          ++  IP   +  L       +  + + +     P      +    
Sbjct: 84  EAIATPMLQQLEDAGVVRVIPTARAARLTMDREGIRRLAAETLGVPTSPYKFCDSLAELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P ++KP+   S  G   I     +      + +        +I +     +
Sbjct: 144 AAIDEGIGYPCIVKPVMSSSGKGQSKIDGPADVQKAWDYAMAGGRVSHGRVIVEGFIDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + D       K       ++ S        P  +     ++ Q++A     
Sbjct: 204 YEITLLTVRAKDAVGAVETKFCDPIGHVQVSGDYVESWQPHPMAPAALQKAQQIAQAVTA 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G +G+   +        +V++ E++ +P      +    
Sbjct: 264 DLGGQGLFGVELFV--KGDEVWFSEVSPRP--HDTGMVTMA 300


>gi|313144021|ref|ZP_07806214.1| carbamoyl-phosphate synthase [Helicobacter cinaedi CCUG 18818]
 gi|313129052|gb|EFR46669.1| carbamoyl-phosphate synthase [Helicobacter cinaedi CCUG 18818]
          Length = 1126

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/262 (12%), Positives = 88/262 (33%), Gaps = 15/262 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              ID +R V  V+   KPD    ++H        +   L  +      +       + D
Sbjct: 646 FEPIDFER-VRAVIEREKPDGI--IVHFGGQTPLKLANSLTKINAKIIGTSAKVIDTAED 702

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDS--QHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           + +    V++ G+    + +           + I  P +++P        + ++  D  +
Sbjct: 703 REKFASFVNNLGLKQPQNGIAYEKEQAYSVANKIGFPVLVRPSYVLGGRAMRIVYDDDEL 762

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
              + +  + +    +LI+++++       +  D   D   + +     +  E    S +
Sbjct: 763 KQYMDEVIAVSDSSPVLIDKFLE---YAIELDVDCISDGESVYIGGIMEHIEEAGIHSGD 819

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT 269
           S   LP     +   +    +       +G  G+    +     + +++ +E+N +   T
Sbjct: 820 SASSLPTINIRESMLKEIEQSTAKIALKLGVVGLMNVQYAI--YNNELYLIEVNPRASRT 877

Query: 270 PVSIFPEMAAYAGYSFRELLLW 291
                P ++   G    ++   
Sbjct: 878 ----VPFVSKATGLPLAKIATR 895



 Score = 39.9 bits (91), Expect = 0.43,   Method: Composition-based stats.
 Identities = 22/190 (11%), Positives = 56/190 (29%), Gaps = 4/190 (2%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +P           +++   I  P +I+     +  G  V                 + 
Sbjct: 33  MDLPKSRYAYTEEEALEAAKEIGFPLIIRASFTLAGGGSGVAYNIDEFKAVAKNGLETSP 92

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
            +++LIE+ + G +     +     D   I     +     +      +          +
Sbjct: 93  INEILIEESLLGWKEYEMEVIRDKFDNCIIVCSIENLDPMGVHTGDSITIAPALTLTDKE 152

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
             +       +  +     G S   F  +P + ++  +E+N  P ++  S     +   G
Sbjct: 153 YQRMRDASFKILREIGVDTGGSNVQFAINPKNGRMTVIEMN--PRVSRSS--ALASKATG 208

Query: 283 YSFRELLLWM 292
           Y   ++   +
Sbjct: 209 YPIAKVATML 218


>gi|302682408|ref|XP_003030885.1| hypothetical protein SCHCODRAFT_82438 [Schizophyllum commune H4-8]
 gi|300104577|gb|EFI95982.1| hypothetical protein SCHCODRAFT_82438 [Schizophyllum commune H4-8]
          Length = 2211

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/294 (11%), Positives = 85/294 (28%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     ++ +                       V  ++ + +PD  + 
Sbjct: 471 SGSQAIKALKEEGIYTIMVNPNIATIATSKGLADKVYFLPVTPEFVRKIIKYEQPDGIYV 530

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G    +  ++   E  E+     G     + M + R     +   +    +      
Sbjct: 531 TFGGQTALNVGIKLKDEFEELGVQVLGTPIDTIIMTEDRQLFADAMAEIGEKCAESCTAQ 590

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
             +        I  P +++       LG    +    +   L   +       L+ +   
Sbjct: 591 NQEEALAAAKSIGFPVIVRAAYALGGLGSGFAQDAAQL-SALCAKAFATSPQVLIEKSMK 649

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
              E+   V+ D   +   +   ++          S+         +    Y  ++  A 
Sbjct: 650 GWKEIEYEVVRDCRDNCITVCNMENFDPLGIHTGDSIVVAPSQ--TLSDSDYNMLRTTAI 707

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P S++   +E+N +  ++  S     +   GY   
Sbjct: 708 NVIRHLGVVGECNIQYALNPNSQEYCIIEVNAR--LSRSS--ALASKATGYPLA 757


>gi|262042813|ref|ZP_06015966.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
 gi|259039880|gb|EEW40998.1| acetyl-CoA carboxylase [Klebsiella pneumoniae subsp.
           rhinoscleromatis ATCC 13884]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/157 (15%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                     I  P +IK   GG   G+ V++ D  +   +  + +     +N+    + 
Sbjct: 142 MDANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFNNDMVYME 201

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   V+ D   +   +A           +             I  ++ + + 
Sbjct: 202 KYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGITPELRRYIG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A   IG RG    +FLF   + + +++E+N +
Sbjct: 258 ERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|218526274|gb|ACK86544.1| carbamoyl-phosphate synthase [Stilbopteryx costalis]
          Length = 717

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 126 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + ++     V    +
Sbjct: 186 TFGGQTALNCGVELEKANVFAKYGCKILGTPIQSVIETEDRKMFAEKINEIGEKVAPSAA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + + +H +QL+I++
Sbjct: 246 VYSVDEALDAAERIGYPVMARAAFSLGGLGSGFAHNKEQLQN--LATQALSHSNQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AIKVIRHFRVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|218550540|ref|YP_002384331.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia
           fergusonii ATCC 35469]
 gi|218358081|emb|CAQ90727.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           fergusonii ATCC 35469]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLTDETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|188997642|ref|YP_001931893.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurihydrogenibium
           sp. YO3AOP1]
 gi|188932709|gb|ACD67339.1| acetyl-CoA carboxylase, biotin carboxylase [Sulfurihydrogenibium
           sp. YO3AOP1]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 71/216 (32%), Gaps = 6/216 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    AI E   I +         L+ DK ++++V    GVP+    
Sbjct: 79  DAVYPG-YGFLAENPTFAAICERSNIKFIGPSSETIKLTGDKAQAREVAKKAGVPIIHGS 137

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +   +  ++    I  P +IK   GG   G+ V   +Q +   L  +           
Sbjct: 138 PPVEELKEALEISSEIGYPVLIKAAAGGGGRGMRVAHNEQELARLLPLAQREAESSFGDR 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L      V         ++          P+    +  ++  
Sbjct: 198 RVYIEKFIENPKHIEIQILADEFGNVIHLGERECSVQRRHQKLIEESPSPFIDEKIRKEM 257

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              A    +A+   G    +F+ D      +++E+N
Sbjct: 258 GEAAVKFAKAVNFTGAGTVEFIVDKNKN-FYFIEMN 292


>gi|329296297|ref|ZP_08253633.1| phosphoribosylglycinamide formyltransferase 2 [Plautia stali
           symbiont]
          Length = 392

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++A  +P      +
Sbjct: 24  GKEVALECQRLGVEVIAVDRYADAPAMHVAHRSHVINMLDGDALAALIAQEQPHFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         +P   +  L       +  + + ++                +
Sbjct: 84  EAIATEKLLELEAQGQKVVPTARAARLTMNREGIRRLAAEELALPT-STYQFADSKERFV 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            + H I  P ++KP+   S  G   I++   +        +   G        V+G+   
Sbjct: 143 AAAHEIGFPCIVKPVMSSSGKGQSFIREASQLDHA--WDYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     +  Q +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQHMSELALQRAQDIAANVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVVFSEVSPRPHDTGM 289


>gi|327481930|gb|AEA85240.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri DSM 4166]
          Length = 636

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 151 AEKIGYPVLLKATAGGGGKGMKVVEREADLAEALASAQREAQSSFGDSRMLVEKYVLKPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A + IG
Sbjct: 211 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVKAAKTIG 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 271 YVGAGTVEFLLDAR-GEFFFMEMNTR 295


>gi|307129035|ref|YP_003881051.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Dickeya
           dadantii 3937]
 gi|306526564|gb|ADM96494.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Dickeya
           dadantii 3937]
          Length = 447

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 88/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK---------PDLAFN----------- 56
                 A ++ G K   +    DR +  VL   +         P    N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSPKSYLNIPAIISAAEIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 ILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                     ++      I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   I  RG    +FLF   + + +++E+N +
Sbjct: 250 ADLRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|254671002|emb|CBA07763.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           alpha153]
 gi|308389960|gb|ADO32280.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis alpha710]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|261381307|ref|ZP_05985880.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           subflava NJ9703]
 gi|284795794|gb|EFC51141.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           subflava NJ9703]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEEERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|260642518|ref|ZP_05416178.2| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           finegoldii DSM 17565]
 gi|260621779|gb|EEX44650.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           finegoldii DSM 17565]
          Length = 389

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 75/244 (30%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  V+   +PD+    +      + L     E +++  +   +  +  
Sbjct: 45  EFEIFDMLNGEELERVVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNFTMN 103

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                        ++   I  P V+KPL   S  G  ++K    
Sbjct: 104 RKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSLVKSADE 163

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        S + GD  +L+IE+++        +        T    P            
Sbjct: 164 LEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 223

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F     +  V++ E++ +P 
Sbjct: 224 SFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLSHENG-VYFSELSPRPH 277

Query: 267 --GM 268
             GM
Sbjct: 278 DTGM 281


>gi|212636206|ref|YP_002312731.1| biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [Shewanella piezotolerans WP3]
 gi|212557690|gb|ACJ30144.1| Biotin/lipoyl attachment:Carbamoyl-phosphate synthase L chain,
           ATP-binding:Carbamoyl-phosphate synthetase large chain
           [Shewanella piezotolerans WP3]
          Length = 685

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +IK   GG   G+ +++    +   +  +           +  ++       
Sbjct: 148 ANEMGFPLLIKAAYGGGGKGMRIVESKDEVLEAIQSARREAISSFGNDKLLMERYLRQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       +             ++          PA    D +   +   A  A +AI 
Sbjct: 208 HVEVQVFADSFGNCIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRVNMGEAAVAAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTVEFLLDT-DGSFYFMEMNTR 292


>gi|33112885|gb|AAP94122.1| acetyl-CoA carboxylase 1 [Homo sapiens]
          Length = 2346

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILVDQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|53805224|ref|YP_113053.1| hypothetical protein MCA0534 [Methylococcus capsulatus str. Bath]
 gi|53758985|gb|AAU93276.1| hypothetical protein MCA0534 [Methylococcus capsulatus str. Bath]
          Length = 380

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 61/182 (33%), Gaps = 19/182 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   G S  G  V K      L  +          LLI+Q++DG   +  
Sbjct: 144 ARAMGYPVMLKRSHGCSGSG--VRKVAGEAELGAVFELLNEGNGTLLIQQFLDGRVGSSD 201

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D  + V   +                 +           +++E+  +        G 
Sbjct: 202 VLFDRGVPVCWQSW---------YSRQCWPTPLASSCVREAMVHREIGPMLAGVGALSGF 252

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV---EDAS 297
            G +  D++ D    +++ +E N +P  TP      +   +G  F +    ++     A 
Sbjct: 253 HGFAGVDWVHDTERDRIYLIEFNPRP--TPTYHLDVL---SGVRFADSFHAILAGTRSAG 307

Query: 298 CL 299
           C 
Sbjct: 308 CR 309


>gi|193066798|ref|ZP_03047809.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli E22]
 gi|209920728|ref|YP_002294812.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE11]
 gi|218555820|ref|YP_002388733.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           IAI1]
 gi|218696955|ref|YP_002404622.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           55989]
 gi|256018830|ref|ZP_05432695.1| acetyl-CoA carboxylase biotin carboxylase subunit [Shigella sp. D9]
 gi|300817489|ref|ZP_07097705.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 107-1]
 gi|300824968|ref|ZP_07105067.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 119-7]
 gi|307314987|ref|ZP_07594575.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli W]
 gi|331670079|ref|ZP_08370924.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA271]
 gi|331679329|ref|ZP_08380001.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H591]
 gi|192925557|gb|EDV80240.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli E22]
 gi|209913987|dbj|BAG79061.1| acetyl-CoA carboxylase biotin carboxylase subunit [Escherichia coli
           SE11]
 gi|218353687|emb|CAU99939.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli 55989]
 gi|218362588|emb|CAR00213.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli IAI1]
 gi|300522534|gb|EFK43603.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 119-7]
 gi|300529787|gb|EFK50849.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 107-1]
 gi|306905570|gb|EFN36102.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli W]
 gi|315062555|gb|ADT76882.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli W]
 gi|323162941|gb|EFZ48776.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           E128010]
 gi|323183015|gb|EFZ68414.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli 1357]
 gi|323376858|gb|ADX49126.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli KO11]
 gi|323966434|gb|EGB61868.1| acetyl-CoA carboxylase [Escherichia coli M863]
 gi|323979033|gb|EGB74111.1| acetyl-CoA carboxylase [Escherichia coli TW10509]
 gi|324020769|gb|EGB89988.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 117-3]
 gi|324115140|gb|EGC09104.1| acetyl-CoA carboxylase [Escherichia fergusonii B253]
 gi|324119436|gb|EGC13319.1| acetyl-CoA carboxylase [Escherichia coli E1167]
 gi|325498835|gb|EGC96694.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia fergusonii
           ECD227]
 gi|327251349|gb|EGE63038.1| acetyl-CoA carboxylase, biotin carboxylase [Escherichia coli
           STEC_7v]
 gi|331062992|gb|EGI34906.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli TA271]
 gi|331073394|gb|EGI44717.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli H591]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|307637750|gb|ADN80200.1| Biotin carboxylase of acetyl-CoA carboxylase [Helicobacter pylori
           908]
 gi|325997939|gb|ADZ50147.1| Biotin carboxylase [Helicobacter pylori 2017]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALST 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHVEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
              +G +   L+ WM++ A   +
Sbjct: 313 EMVSGLN---LIEWMIKIAQGEK 332


>gi|294791069|ref|ZP_06756227.1| conserved hypothetical protein [Scardovia inopinata F0304]
 gi|294458966|gb|EFG27319.1| conserved hypothetical protein [Scardovia inopinata F0304]
          Length = 424

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 81/273 (29%), Gaps = 27/273 (9%)

Query: 41  SVGLVLAHLKPDLAFNVLHGN-FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           S+G  L    P     ++    +    L +   +L          L +   ++   S + 
Sbjct: 61  SLGQQLKQEDPSRILILMANTEWRIQVLARNRQKLETWYQIPIPSLETIEKLNDKESFEN 120

Query: 100 VSS---------CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGG--------SSLGII 142
           ++                 S   +         ++ P V KP +              + 
Sbjct: 121 LAHQVGIDTPLSFYQDFSASDQPDWKPQPLPQELAFPLVAKPAQSAEYEQLMFEGRKKVY 180

Query: 143 VIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSY 202
            I   + +              + + +Q ++G +     +         ++   S     
Sbjct: 181 RISSQEELEHLWSTLRKAGFRGKFIAQQLIEGDDTQMYSITAYVNKKGSVSFMASARVL- 239

Query: 203 ELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
                   +T   P  +       + + A    +++   G +  D   DP S + ++LE+
Sbjct: 240 --LEEHHPATLGNPCAMITTPISHILQPAKRLLESVDYHGFANFDVKQDPHSGRFYFLEV 297

Query: 263 NVQPGMTPVSIFPEMAAYAGYS-FRELLLWMVE 294
           N + G    S +   A   G +  +E+   +++
Sbjct: 298 NPRIG--RNSFYCLGA---GINPMKEMTDDLLQ 325


>gi|260846061|ref|YP_003223839.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O103:H2 str. 12009]
 gi|257761208|dbj|BAI32705.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli O103:H2 str. 12009]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|632808|gb|AAB31500.1| pyruvate carboxylase [Homo sapiens]
          Length = 1178

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEAWPAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|301159929|emb|CBW19448.1| biotin carboxylase [Salmonella enterica subsp. enterica serovar
           Typhimurium str. SL1344]
          Length = 419

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/157 (14%), Positives = 54/157 (34%), Gaps = 11/157 (7%)

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLI 168
                     I  P +IK   GG   G+ V++ D  +   +  + +     +++    + 
Sbjct: 112 MNANRAHAKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSNDMVYME 171

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +   +   +   V+ D   +   +A           +             I  ++ + + 
Sbjct: 172 KYLENPRHIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGITPELRRYIG 227

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                A   IG RG    +FLF   + + +++E+N +
Sbjct: 228 ERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 262


>gi|302037782|ref|YP_003798104.1| acetyl-Coa carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
 gi|300605846|emb|CBK42179.1| Acetyl-CoA carboxylase, biotin carboxylase [Candidatus Nitrospira
           defluvii]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/221 (18%), Positives = 85/221 (38%), Gaps = 17/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +        AL  DK ++++VV+  G+PV P    
Sbjct: 77  AIHPGYGFLSENAHFAEVCESIGVKFIGPTSENIALMGDKSKAREVVAKKGLPVTPGSPG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGD 164
            +   +   ++   I  P +IK   GG   G+ V+ K + +      +      ++ H  
Sbjct: 137 ELRSEQDAQEAAKTIGFPVIIKASAGGGGRGMRVVNKPEELARAFQAAQAEAKSTFGHDG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L   +++   +   ++ D    V  +            +             I  ++ 
Sbjct: 197 VYLERYFLEPRHIEVQIVADNRGHVVHLGERDCSIQ----RRHQKLVEETPSPAIDEELR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+ R+A  A +AI    +   +FL D   R  F++E+N +
Sbjct: 253 REIGRVAVQAVKAIRYCNVGTVEFLLD-KDRNFFFMEVNTR 292


>gi|315586974|gb|ADU41355.1| acetyl-CoA carboxylase subunit A [Helicobacter pylori 35A]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 45/263 (17%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + I
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGI 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
              +G +   L+ WM++ A   +
Sbjct: 313 EMVSGLN---LIEWMIKIAQGEK 332


>gi|284161164|ref|YP_003399787.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus profundus
           DSM 5631]
 gi|284011161|gb|ADB57114.1| acetyl-CoA carboxylase, biotin carboxylase [Archaeoglobus profundus
           DSM 5631]
          Length = 504

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/234 (15%), Positives = 76/234 (32%), Gaps = 8/234 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +++DR +  V      D      +G   E+       E   I +        A    K+ 
Sbjct: 61  LNIDR-IIEVAKKADVDAIHPG-YGFLAENPEFAKRCEEEGIVFIGPSSDVIAKMGSKVM 118

Query: 96  SKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +++++   G+PV P    +            I  P  IK   GG  +GI ++  +  +  
Sbjct: 119 ARKLMQEAGLPVVPGSPALEDVDSAFKWAEKIGYPVAIKASGGGGGIGITIVNSEDELEQ 178

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              +S             Y++        +    L      V         ++       
Sbjct: 179 AFYKSKKLGEKYFGDATVYIEKYLPKPRHIEFQVLADEHGNVIHLGERECSIQRRHQKLI 238

Query: 213 HVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              P+  +  +  +E+ +L     + IG       +FL+     K ++LE+N +
Sbjct: 239 EECPSPAVDDETREEMGKLVVKGTKYIGYTNAGTMEFLY--QDGKFYFLEMNTR 290


>gi|261749211|ref|YP_003256896.1| acetyl-CoA carboxylase, biotin carboxylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
 gi|261497303|gb|ACX83753.1| acetyl-CoA carboxylase, biotin carboxylase [Blattabacterium sp.
           (Periplaneta americana) str. BPLAN]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/213 (13%), Positives = 73/213 (34%), Gaps = 7/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV----- 113
           +G   E+    ++ +   I +            +K+ +K+ +   G+   P         
Sbjct: 82  YGFLSENAYFSSMCKKHGIKFIGPLPNHIIQMGNKISAKKTMKKAGISCLPGSDFFLESS 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
            +        I  P +IK + GG   GI  +   + +     ++   +       + Y++
Sbjct: 142 YKEIEKMAEKIGYPLIIKAVSGGGGKGIRSVLDKEGLKRSWEEAKKESFAFFGKKDMYIE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
            + L    +    +                ++  +       P+      + K++  +A 
Sbjct: 202 KLILNPRHIEIQIISDQYGKACHLSERDCSIQRRNQKLLEEAPSPFLTPSLRKKMGEVAI 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + I   G+   +FL D  +R  +++E+N +
Sbjct: 262 KAAEFIRYEGVGTIEFLVD-QNRNFYFMEMNTR 293


>gi|268316242|ref|YP_003289961.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodothermus marinus
           DSM 4252]
 gi|262333776|gb|ACY47573.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodothermus marinus
           DSM 4252]
          Length = 452

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D      +G   E+    AI     + +   
Sbjct: 47  EAVCIGPSPSSESYLRIDRIIAAAEVTGADAVHPG-YGFLSENADFSAICADHGLKFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              A  L  DK  +K+ +   GVPV P     I   +  +     I  P +IK   GG  
Sbjct: 106 SPEAIRLMGDKSLAKETMRKAGVPVVPGSDGVIENVKEGLRVAAEIGYPVMIKAAAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V+++++        +           + Y++   +    +    L   +  V    
Sbjct: 166 RGMRVVQREEDFERQFNAARREAEAAFGRPDVYLEKFIVQPRHVEIQVLGDGKGNVIHLG 225

Query: 199 FYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P   +  D+ + +   A    QA+   G    +FL D   R  
Sbjct: 226 ERECSIQRRHQKLLEEAPSPIMDEDLRRRMGEAAVRGAQAVNYEGAGTIEFLVDA-DRNF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|225027953|ref|ZP_03717145.1| hypothetical protein EUBHAL_02213 [Eubacterium hallii DSM 3353]
 gi|224954667|gb|EEG35876.1| hypothetical protein EUBHAL_02213 [Eubacterium hallii DSM 3353]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/280 (12%), Positives = 84/280 (30%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G +   +  +     +   L  +                          
Sbjct: 14  AIRIIRACREMGIETVAVYSEADREALHTQLADEAVCIGPAAAKDSYLNMEQIISATMIT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP---- 106
               +H   G   E+     + E   I +        A   +K  ++Q +   GVP    
Sbjct: 74  GADAIHPGFGFLSENSQFAKLCEACHITFIGPDSDIIARLGNKAVARQTMVDAGVPVIPG 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              ++   +  ++    I  P ++K + GG   G+ V   +       L +   +     
Sbjct: 134 CQKALTDVKEALEIAKGIGFPVIVKAVLGGGGKGMRVAYNEDEFENAFLMAQKESGLAFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYK 225
               Y++        +    L      V         ++ +        P+  +  ++ +
Sbjct: 194 DESMYLEHFVENPRHIEFQILADNYGNVIHLGERDCSVQRNHQKVIEESPSAVVDEELRE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ + A LA +A G +     +FL     +  +++E+N +
Sbjct: 254 KMGQAAVLAAKAAGYKNAGTIEFLL-EKDKSFYFMEMNTR 292


>gi|158451197|gb|ABW38959.1| putative CAD trifunctional protein [Hemaris thysbe]
          Length = 1171

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + + S    V    +
Sbjct: 435 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKICSIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 495 VMSVDEALAAAAQIGYPVMARSAFSLGGMGSGFANNEEELKS--LAHQALSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|194289696|ref|YP_002005603.1| phosphoribosylglycinamide formyltransferase 2 [Cupriavidus
           taiwanensis LMG 19424]
 gi|254788766|sp|B3R259|PURT_CUPTR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|193223531|emb|CAQ69536.1| phosphoribosylglycinamide formyltransferase 2 [Cupriavidus
           taiwanensis LMG 19424]
          Length = 401

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/282 (11%), Positives = 76/282 (26%), Gaps = 28/282 (9%)

Query: 19  GKACASALEDAGFKVSQI---------------------DVDRSVGLVLAHLKPDLAFNV 57
           GK    AL+  G +   +                     D D  +  ++   KP L    
Sbjct: 24  GKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMSDPD-QLKALIEAEKPHLVVPE 82

Query: 58  LHGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           +                +  IP   +  L       +  + + +     P      +   
Sbjct: 83  IEAIATPMLETLEAAGTVRVIPTARAARLTMDREGIRRLAAESLGLPTSPYKFCDSLEEL 142

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGI 175
                  I  P V+KP+   S  G   I   + +      + +        +I +     
Sbjct: 143 QAAIDGGIGYPCVVKPVMSSSGKGQSKIDGPEGVKAAWDYAMAGGRVSHGRVIVEGFIDF 202

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +    ++   ++  +     +       ++ S        P  +        QR+A    
Sbjct: 203 DYEITLLTVRAIGASGQVETRFCAPIGHVQVSGDYVESWQPQPMHPAALASAQRIAQAVT 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             +G  G+   +        +V++ E++ +P      +    
Sbjct: 263 ADLGGMGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMA 300


>gi|34398187|gb|AAQ67183.1| CAD [Lonchoptera furcata]
          Length = 1291

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 366 SGSQAIKAMKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+      VS     V    +
Sbjct: 426 TFGGQTALNCGVELERAGIFAKYNVRILGTPIQSIIETEDRKIFADRVSEIGEKVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 486 VYSVEQALEAAERLGYPVMARAAFSLGGLGSGFADSKEELRN--LAQQALAHSSQLVIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 603 AIKVIRHFGVIGECNIQYALNPESEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|312143545|ref|YP_003994991.1| pyruvate carboxylase [Halanaerobium sp. 'sapolanicus']
 gi|311904196|gb|ADQ14637.1| pyruvate carboxylase [Halanaerobium sp. 'sapolanicus']
          Length = 1143

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/282 (13%), Positives = 79/282 (28%), Gaps = 37/282 (13%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAF----------------------- 55
                 A ++ G +   I         L   K D A+                       
Sbjct: 17  AIRVIRACQELGIRTVAIY-SEEDKTALFKTKADEAYQIGGNKGPIGAYLSINEIIDLAI 75

Query: 56  ----NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
               + +H   G   E+       +  +I +            DK++SK + +  GVP  
Sbjct: 76  KKDVDAIHPGYGFLAENPDFVRKCKEADIKFIGPDAEIMDKLGDKIKSKILANKLGVPTI 135

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           P     I   +   D     + P ++K   GG   G+ +++ D  +      +       
Sbjct: 136 PGLERPIKKEQEIKDFAEKNNYPLMLKAAAGGGGRGMRIVRSDDELLESFRDAREEARKA 195

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + + +V+        +    L      +         ++          PA    D  
Sbjct: 196 FGVEDIFVEKYLENPKHIEVQILGDEHGNIVHLYERDCSIQRRHQKIIEFTPAISLSDKK 255

Query: 225 KEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +      A    +    +     +FL D      +++E+N +
Sbjct: 256 RNEILEDALKLCKGANYKNAGTVEFLVDKYDNH-YFIEVNPR 296


>gi|294933077|ref|XP_002780586.1| acetyl-coa carboxylase, putative [Perkinsus marinus ATCC 50983]
 gi|239890520|gb|EER12381.1| acetyl-coa carboxylase, putative [Perkinsus marinus ATCC 50983]
          Length = 2033

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 18/231 (7%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
             + D+ +    G+  E+  +    E   I +         L  DK  S      CGVP 
Sbjct: 115 ENECDMIWPG-WGHASENPELPKAFEDTGIEFIGPSAECMRLLGDKAESTITAKKCGVPC 173

Query: 108 CPSILVNRF------------TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
            P                     +    I  P +IK   GG   GI ++   + +     
Sbjct: 174 IPWSGDYPDLATEGFVADSEAAAECCDRIGYPCMIKAAMGGGGKGIRMVSCREEVADKFE 233

Query: 156 -QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
                   G  +++            ++ D   +V  ++           +         
Sbjct: 234 LVRGEIPIGGIMIMRCVTRARHFEVQILADKYNNVVALSTRDCSLQ----RRQQKMVEEG 289

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +   E+Q  A      +G       +FL+D  + + ++LE+N +
Sbjct: 290 PVVHTSHERVLEMQDAAARLCAEVGYVSAGTVEFLYDLDTDEYYFLEVNTR 340


>gi|116872788|ref|YP_849569.1| acetyl-CoA carboxylase biotin carboxylase subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
 gi|116741666|emb|CAK20790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Listeria
           welshimeri serovar 6b str. SLCC5334]
          Length = 454

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAETEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D      +++E+N +
Sbjct: 268 YSGAGTIEFIYDHHENNFYFMEMNTR 293


>gi|89073329|ref|ZP_01159853.1| hypothetical protein SKA34_20307 [Photobacterium sp. SKA34]
 gi|89050816|gb|EAR56290.1| hypothetical protein SKA34_20307 [Photobacterium sp. SKA34]
          Length = 324

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 94/298 (31%), Gaps = 46/298 (15%)

Query: 11  EREVSLSS----GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           ERE+S+ +    G A A               D+ +G +      DL F+   G      
Sbjct: 28  EREISVVTNLDLGNAVA-------HDGGIFCNDQDMGSL------DLFFSYNAGQQTPYQ 74

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQH 122
                     IP   +   A  L+ DK ++ Q++   G+     ++ N+  +D      +
Sbjct: 75  TYLYQTLSTIIPT-INNYEAFELTEDKFKTAQLLKRHGINTPDYVVCNKRNIDNLKKHFN 133

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
                 + KP+ G    GII ++ ++ + L      +       L        E      
Sbjct: 134 FWQGQAICKPINGWGGNGIIKLESERDLDLIYPYIVNQASPQLYL--------ERIIEND 185

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                         + +     + S   +       I  +   EV  LA  A +  G   
Sbjct: 186 FTDYRVDIVDDQFIACYGRKAAEGSWKTNITSGGNVIQREAPPEVIELALKAARITGLE- 244

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGM-TPVSIFPEMAAYAGYSFR--------ELLLW 291
           I+  D ++D   +K   LE+N  P   TP           G +F         +L+  
Sbjct: 245 IAGVDIIYDIKHQKYVVLEVNGIPAFATP------AQEKMGINFNAKKIQCIVDLIDR 296


>gi|254182780|ref|ZP_04889373.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
 gi|184213314|gb|EDU10357.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1655]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDALCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G RG    ++LFD    +++++E+N +
Sbjct: 280 VGYRGAGTLEYLFDDARGELYFIEMNTR 307


>gi|85104807|ref|XP_961813.1| protein pyrABCN [Neurospora crassa OR74A]
 gi|28923389|gb|EAA32577.1| protein pyrABCN [Neurospora crassa OR74A]
          Length = 1832

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/294 (13%), Positives = 88/294 (29%), Gaps = 32/294 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+ + +PD  + 
Sbjct: 462 SGSQAIKALKEEGIYTVLINPNIATIQTSKGLADKVYFLPVNAEFVRKVIKYEQPDAIYC 521

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
              G       +Q   E   +     G     +   + R     S   +    +   +  
Sbjct: 522 TFGGQTALSVGIQLKDEFEALGVKVLGTPIDTIITTEDRELFARSMESIGEKCAKSASAS 581

Query: 117 TMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV 172
           +++        I  P +++       LG      +  +    L + +     Q+L+E+ +
Sbjct: 582 SVEEALNAVKDIGYPVIVRAAYALGGLGSGFANNEAELVD--LCNKALAASPQVLVERSM 639

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
            G                 I V   + +     ++  +        +  + Y  ++  A 
Sbjct: 640 KGW-KEIEYEVVRDAQDNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEDYNMLRTTAV 698

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
              + +G  G     +  +P SR+   +E+N +  ++  S     +   GY   
Sbjct: 699 NVIRHLGVVGECNIQYALNPFSREYCIIEVNAR--LSRSS--ALASKATGYPLA 748


>gi|325298460|ref|YP_004258377.1| Phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           salanitronis DSM 18170]
 gi|324318013|gb|ADY35904.1| Phosphoribosylglycinamide formyltransferase 2 [Bacteroides
           salanitronis DSM 18170]
          Length = 389

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/253 (14%), Positives = 72/253 (28%), Gaps = 13/253 (5%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
               A A      +V  +    ++  V+    PD+    +     E         +  +P
Sbjct: 39  AMQVADAC-----EVFNMLDGDALDRVVEKYHPDIIVPEIEAIRTERLYHLEKEGIQVVP 93

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              +          +  + + +                  ++   I  P VIKPL   S 
Sbjct: 94  SARAVNFTMNRKAIRDLAAKELGLKT-AKYFYAKSFDELKEAAEKIGFPCVIKPLMSSSG 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G  V K  + +          + GD   +        +             +       
Sbjct: 153 KGQSVAKGPEDLEHAWHYGCEGSRGDIKELIIEE---FIQFDSEITLLTVTQKNGPTLFC 209

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                ++          PA I  +   E QR+A    +A+   GI   +F     +  V+
Sbjct: 210 PPIGHVQKGGDYRESFQPAHIAPEHLAEAQRMAAKVTEALTGYGIWGVEFFLSHENG-VY 268

Query: 259 WLEINVQP---GM 268
           + E++ +P   GM
Sbjct: 269 FSELSPRPHDTGM 281


>gi|322692970|gb|EFY84850.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Metarhizium
           acridum CQMa 102]
          Length = 1238

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 83/273 (30%), Gaps = 27/273 (9%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  +      D  F   +G   E+      +   +I +      +      K  ++ +
Sbjct: 73  EAILEICKKTGVDAVFPG-YGFLSENADFANAVSSADIIFVGPSSASIKAMGLKHEARAI 131

Query: 100 VSSCGVPVCPSIL---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-- 154
             +  VPV P           + +   +  P ++K   GG  +G+     +  +      
Sbjct: 132 AEAANVPVVPGTQLLSSAVEVVKAARNLGFPVMLKATGGGGGMGLQACNTELEVEKAFAV 191

Query: 155 ---LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S  + +    L + Y     +   V+G+  + V       S    Y+       S
Sbjct: 192 VESRASKLFQNSGVYLEKYYPRSRHIEVQVVGNGEIVVAFGERECSLQRRYQKVIEECPS 251

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPV 271
             V       +    +   A      +  + +   +FL D  +   F+LE+N        
Sbjct: 252 PFVERHPGLRE---RMLEAATNYAAQLKYKSVGTVEFLVDDETANFFFLEMNT------- 301

Query: 272 SIFPEMAAYAGYS---FR-ELLLWMVEDASCLR 300
                +    G +   +  +L+  M+  A   R
Sbjct: 302 ----RLQVEHGITELCYEVDLVHLMLLQADFER 330


>gi|301299587|ref|ZP_07205849.1| pyruvate carboxylase [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300852806|gb|EFK80428.1| pyruvate carboxylase [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 1141

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D++  +  +      D      +G   E+       E   I +    +    +  DK+ 
Sbjct: 61  LDIN-DIIRIAKMTNADAIHPG-YGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVE 118

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ V +S G+   P         +           P +IK   GG   G+ ++K+ + + 
Sbjct: 119 ARNVANSAGLHTIPGTNDPVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S  +      E YV+ + +    +    L      V         ++  +   
Sbjct: 179 EAYERARSEANQSFGDDELYVEKMIVNPKHIEVQILADKHGNVMHLFERDCSVQRRNQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +  KE+   A    +++        +FL        +++E+N +
Sbjct: 239 IEFAPSITLSQERRKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNPR 291


>gi|159129416|gb|EDP54530.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           A1163]
          Length = 1175

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 121 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 180

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 181 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLFAQALKEINIPIAESIA 240

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG    +  + +     +S +     Q+L+E+
Sbjct: 241 VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENPEELKNLASRSLTLAP--QILVEK 298

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 299 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 357

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 358 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 409


>gi|170723323|ref|YP_001751011.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           W619]
 gi|254788778|sp|B1JDF0|PURT_PSEPW RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|169761326|gb|ACA74642.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           W619]
          Length = 393

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVNMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFNVVPTARATQLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++ D  +        +   G        ++G    
Sbjct: 143 KAVADVGYPCVVKPVMSSSGKGQSLLRSDADLQK--SWDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFDYEITLLTVRHVGGTTYLEPVGHRQEKGDYQESWQPQAMSPKALAESQRVAKAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|332279913|ref|ZP_08392326.1| biotin carboxylase [Shigella sp. D9]
 gi|332102265|gb|EGJ05611.1| biotin carboxylase [Shigella sp. D9]
          Length = 462

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 27  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 86

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 87  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPG 146

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 147 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 206

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 207 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 262

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 263 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 305


>gi|90961635|ref|YP_535551.1| pyruvate carboxylase [Lactobacillus salivarius UCC118]
 gi|227890723|ref|ZP_04008528.1| pyruvate carboxylase [Lactobacillus salivarius ATCC 11741]
 gi|90820829|gb|ABD99468.1| Pyruvate carboxylase [Lactobacillus salivarius UCC118]
 gi|227867661|gb|EEJ75082.1| pyruvate carboxylase [Lactobacillus salivarius ATCC 11741]
          Length = 1141

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/235 (14%), Positives = 78/235 (33%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D++  +  +      D      +G   E+       E   I +    +    +  DK+ 
Sbjct: 61  LDIN-DIIRIAKMTNADAIHPG-YGFLAENEEFAQKCEENGITFIGPSVEHLRIFGDKVE 118

Query: 96  SKQVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++ V +S G+   P         +           P +IK   GG   G+ ++K+ + + 
Sbjct: 119 ARNVANSAGLHTIPGTNDPVKSLKDVEKFADKHGYPIMIKAAMGGGGRGMRIVKRKEELR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S  +      E YV+ + +    +    L      V         ++  +   
Sbjct: 179 EAYERARSEANQSFGDDELYVEKMIVNPKHIEVQILADKHGNVMHLFERDCSVQRRNQKV 238

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+     +  KE+   A    +++        +FL        +++E+N +
Sbjct: 239 IEFAPSITLSQERRKEICEAAVNLAKSVNYYNAGTVEFLVTEDD--FYFVEVNPR 291


>gi|71001318|ref|XP_755340.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           Af293]
 gi|66852978|gb|EAL93302.1| carbamoyl-phosphate synthase, large subunit [Aspergillus fumigatus
           Af293]
          Length = 1175

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 121 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 180

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 181 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLFAQALKEINIPIAESIA 240

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG    +  + +     +S +     Q+L+E+
Sbjct: 241 VNTVDEALKAAESVGYPIIVRSAYALGGLGSGFAENPEELKNLASRSLTLAP--QILVEK 298

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 299 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 357

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 358 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 409


>gi|332293463|ref|YP_004432072.1| pyruvate carboxylase [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171549|gb|AEE20804.1| pyruvate carboxylase [Krokinobacter diaphorus 4H-3-7-5]
          Length = 1150

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/234 (15%), Positives = 78/234 (33%), Gaps = 6/234 (2%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
            +D    + LA  K   A +  +G   E+           I +            DK+ +
Sbjct: 62  YLDMDQIIDLAKSKHVDAIHPGYGFLSENSTFARKCAENGIIFIGPKPEVMDALGDKITA 121

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K+V   CGVP+  S      T+D        I  P ++K   GG   G+ +I+K + + L
Sbjct: 122 KKVAQQCGVPIIESNKTALDTLDIALSEATKIGYPLMLKAASGGGGRGMRIIRKVEDLQL 181

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
               + +           +++        +    +  +   +         ++       
Sbjct: 182 SFDSARNEALNSFGDDTMFLEKYVEDPKHIEVQIVADSHGNIRHLYERDCSVQRRHQKVV 241

Query: 213 HVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P+      +   + + A      +    I   +FL D     ++++E+N +
Sbjct: 242 EMAPSYGLSQTLRDNLYKYAVAIATEVNYNNIGTVEFLVDADDN-IYFIEVNPR 294


>gi|254934067|gb|ACT87642.1| carbamoylphosphate synthetase [Pryeria sinica]
          Length = 976

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAINEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELERSKVFEKYNVHVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L S +++H DQL+I++
Sbjct: 496 VSTVEEAIAAASQIGYPVMARAAFSLGGLGSGFANNEDELRS--LASQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENIDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGVVGECNIQYALNPHTEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|260463914|ref|ZP_05812110.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
 gi|259030289|gb|EEW31569.1| Carbamoyl-phosphate synthase L chain ATP-binding [Mesorhizobium
           opportunistum WSM2075]
          Length = 670

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 53/187 (28%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +      +     ++ S           +++   +   
Sbjct: 148 AGEIGYPVMIKASAGGGGKGMRIAWDRSEVRDGFDRARSEAKSSFGDDRVFIEKFVVDPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++  +       P+       ++     +    +A+ 
Sbjct: 208 HIEIQVLADAHGNALYLGERECSIQRRNQKVAEEAPSPFLDATTRKAMGEQSVALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDKDKN-FYFLEMNTR----------LQVEHPVTELVTGI---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|242798922|ref|XP_002483268.1| carbamoyl-phosphate synthase, large subunit [Talaromyces stipitatus
           ATCC 10500]
 gi|218716613|gb|EED16034.1| carbamoyl-phosphate synthase, large subunit [Talaromyces stipitatus
           ATCC 10500]
          Length = 1180

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 46/296 (15%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 185

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +         I E   +    + I     S D+    + ++   +P+  SI 
Sbjct: 186 SFGGQTALNLGVQMNRMGIFERYGVRVLGTSIRTLETSEDRDLFAKALNEINIPIAESIA 245

Query: 113 VN--RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
            N     +++   I  P +++       LG       + +    L S S +   Q+L+E+
Sbjct: 246 CNTVDEALEAADKIGYPIIVRSAYALGGLGSGFASNREELKN--LSSRSLSLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAKNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|75675945|ref|YP_318366.1| acetyl-CoA carboxylase biotin carboxylase subunit [Nitrobacter
           winogradskyi Nb-255]
 gi|74420815|gb|ABA05014.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrobacter winogradskyi Nb-255]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     IL    + +         L  DK+ +K+     G+PV P     I  +
Sbjct: 82  YGFLSENARFAEILADHRLHFIGPKAEHIRLMGDKIEAKKTAKRLGIPVVPGSDGGIGPD 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M     I  P ++K   GG   G+ ++K    + + +  + +           Y++ 
Sbjct: 142 DNAMAIAKAIGFPVLVKAAAGGGGRGMKIVKTPDDLMMAISAAGNEARAAFGDASVYLEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-L 233
                  +    L                L+          P+       +         
Sbjct: 202 YLQKPRHIEIQVLGDGRGGAIHLGERDCSLQRRHQKVWEEGPSPALTAAARNKIGETVAK 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A   I   G+   +FL+     + +++E+N +
Sbjct: 262 AMSEIKYLGVGTVEFLY--EDGRFYFIEMNTR 291


>gi|295665210|ref|XP_002793156.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb01]
 gi|226278070|gb|EEH33636.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb01]
          Length = 1181

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 185

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +         + E   +    + I    +S D+    + ++   +P+  S+ 
Sbjct: 186 TFGGQTALNLGVQMNRMGVFERHGVKVLGTSIRTLEVSEDRDLFSKALNEINIPIAESVA 245

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 246 VNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELKN--LSSRSLTLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|115397665|ref|XP_001214424.1| hypothetical protein ATEG_05246 [Aspergillus terreus NIH2624]
 gi|114192615|gb|EAU34315.1| hypothetical protein ATEG_05246 [Aspergillus terreus NIH2624]
          Length = 1126

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/183 (10%), Positives = 52/183 (28%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G++    ++ +        S           +++    +  
Sbjct: 107 ARDLGFPVMLKATAGGGGMGLLTCNSEEDVRESFSTVQSRGDALFKNAGVFIERYYPSSH 166

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD---IYKEVQRLAFLAHQA 237
            +                     ++          P+        +   +   A    ++
Sbjct: 167 HIEVQVFGNGNGKAISIGERECSIQRRHQKVIEECPSPFVTKNPGLRASLGSAAVRLAES 226

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           I        ++L D  +   F+LE+N             +    G +   +  +L+  M+
Sbjct: 227 INYGSAGTIEYLVDDETGSFFFLEMNT-----------RLQVEHGITELCYGIDLVELML 275

Query: 294 EDA 296
           + A
Sbjct: 276 KQA 278


>gi|992917|gb|AAA75528.1| acetyl CoA carboxylase [Glycine max]
          Length = 2261

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/186 (12%), Positives = 60/186 (32%), Gaps = 5/186 (2%)

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
            +   + +       S  +     +     +      + S  ++  P +IK   GG   G
Sbjct: 177 PTLPWSGSHVKIPPESSLITIPDEIYREACVYTTEEAVASCQVVGYPAMIKASWGGGGKG 236

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSDF 199
           I  +  D  +     Q      G  + I +       L   ++ D   +V  +       
Sbjct: 237 IRKVHNDDEVRALFKQVQGEVPGSPIFIMKVASQSRHLEVQLLCDQYGNVAALHSRDCSV 296

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFW 259
                +               ++  K++++ A     ++   G +  ++L+   + + ++
Sbjct: 297 Q----RRHQKIIEEGPITVATIETVKKLEQAARRLAISVNYVGAATVEYLYSMETGEYYF 352

Query: 260 LEINVQ 265
           LE+N +
Sbjct: 353 LELNPR 358


>gi|253997736|ref|YP_003049799.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
 gi|253984415|gb|ACT49272.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 AKEIGYPVIIKAAGGGGGRGMRVVHTEAALLNSVSMTKAEAGAAFGNPTVYMEKFLEQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                ++          PA       +E        A + I 
Sbjct: 209 HIEIQVLSDEHGNAVYLGERDCSMQRRHQKVLEEAPAPGITQKMREKIGERCADACRRIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|228473656|ref|ZP_04058406.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           gingivalis ATCC 33624]
 gi|228274870|gb|EEK13685.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Capnocytophaga
           gingivalis ATCC 33624]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 17/150 (11%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P ++K   GG   G+  + K++ +      ++      + +    + +   +  
Sbjct: 148 AKKMGYPVMLKATAGGGGKGMRAVWKEEDLEKAFESATQEAAAAFGNDGMYMEKLIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD       ++           +     +       +  ++  ++   A  A 
Sbjct: 208 HIEIQIVGDQYGKACHLSERDCSVQ----RRHQKLTEETPSPFMTDELRAKMGEAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++I   G    +FL D      +++E+N +
Sbjct: 264 ESIKYEGAGTVEFLVDKHRN-FYFMEMNTR 292


>gi|167032075|ref|YP_001667306.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           GB-1]
 gi|254788777|sp|B0KRH6|PURT_PSEPG RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|166858563|gb|ABY96970.1| phosphoribosylglycinamide formyltransferase 2 [Pseudomonas putida
           GB-1]
          Length = 393

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVVNMLDGVALRAVIEAEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELENEGFNVVPTARATQLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYA 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++ D  +        +   G        V+G    
Sbjct: 143 KAVADVGYPCVVKPVMSSSGKGQSLLRSDADLQK--SWDYAQEGGRAGKGRVIVEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  +            +          P  +      E QR+A     A+
Sbjct: 199 DFEYEITLLTVRHVGGTTFLEPVGHRQEKGDYQESWQPQAMSPKALAESQRVAKAVTDAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFV--KGDQVWFSEVSPRP 284


>gi|324503941|gb|ADY41700.1| Propionyl-CoA carboxylase alpha chain [Ascaris suum]
          Length = 743

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/247 (14%), Positives = 73/247 (29%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   +    +    L   +      D     +H   G   E+    A LE     +    
Sbjct: 106 EAVCVGPAPTSESYLRADRILQAVKDTGAQAVHPGYGFLSENTTFAAQLEEAGAKFVGPN 165

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSL 139
             A     DK+ SK++ +   V + P            +   + I  P +IK   GG   
Sbjct: 166 SKAILAMGDKIHSKRIATEARVNMIPGYDGEINDEEECVKVANDIGYPVMIKASAGGGGK 225

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +   D+        S              V+        +    L          + 
Sbjct: 226 GMRIAWNDKEARDGYRLSKQEAKSSFGDDRMLVEKFIDNPRHIEMQVLCDKHGNAIWLNE 285

Query: 200 YSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P+  +  ++ K++   A     A+G       +FL D      +
Sbjct: 286 RECSIQRRNQKVIEEAPSSFVDPEMRKKMGAQATQLALAVGYDSAGTVEFLVDSKKN-FY 344

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 345 FLEMNTR 351


>gi|317014468|gb|ADU81904.1| biotin carboxylase [Helicobacter pylori Gambia94/24]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKIVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
              +G +   L+ WM++ A   +
Sbjct: 313 EMVSGLN---LIEWMIKIAQGEK 332


>gi|301107684|ref|XP_002902924.1| propionyl coenzyme A carboxylase (Pi-PCC1) [Phytophthora infestans
           T30-4]
 gi|262098042|gb|EEY56094.1| propionyl coenzyme A carboxylase (Pi-PCC1) [Phytophthora infestans
           T30-4]
          Length = 764

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/249 (17%), Positives = 83/249 (33%), Gaps = 23/249 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      LE + + +   G  A     DK+ SKQ+    GV   P  L    T 
Sbjct: 114 YGFLSENKDFCEALEAIGVAFIGPGHEAIQAMGDKIESKQLAMDAGVNTIPGFLGEIDTP 173

Query: 119 DSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           D      H I  P +IK   GG   G+ V   D+ + +    S             +++ 
Sbjct: 174 DEAVKVAHEIGYPVMIKASAGGGGKGMRVAYNDEEVRMGYRLSKEEAASSFGDDRMFLEK 233

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +    +  +   V         ++  +       P+ +   +    + + A +
Sbjct: 234 FIEDPRHIEIQLIADSHGNVVALPERECSIQRRNQKVVEEAPSVLLDPETRLAMGKQAAM 293

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFREL 288
             + +G       +FL D      ++LE+N       P +T +            S  +L
Sbjct: 294 LARKVGYVSAGTVEFLCDKHKN-FYFLEMNTRLQVEHP-VTEL-----------ISKVDL 340

Query: 289 LLWMVEDAS 297
           +  M+  A+
Sbjct: 341 VEQMIRVAA 349


>gi|242241082|ref|YP_002989263.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech703]
 gi|242133139|gb|ACS87441.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech703]
          Length = 447

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 83/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSTKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVEQSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLGDDMDKNRSIAKRIGYPVIIKASGGGGGRGMRVVRNDKDLEQSIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    L   + +          ++          P   I  ++ 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGSAIYLAERDCSMQRRHQKVVEEAPAPGITPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FLF   + + +++E+N +
Sbjct: 254 RYIGERCAKACVDISYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|163733458|ref|ZP_02140901.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter litoralis Och
           149]
 gi|161393246|gb|EDQ17572.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter litoralis Och
           149]
          Length = 681

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 21/178 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   D         S +           +++        +   
Sbjct: 153 YPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L  T             ++  +       P+    +  ++     A    QA+G     
Sbjct: 213 VLCDTHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQAVALAQAVGYASAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
             +F+ D      ++LE+N +              +       G    +L+  M+  A
Sbjct: 273 TVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRVA 316


>gi|161833727|ref|YP_001597923.1| carbamyl phosphate synthase large subunit [Candidatus Sulcia
           muelleri GWSS]
 gi|152206217|gb|ABS30527.1| carbamyl phosphate synthase large subunit [Candidatus Sulcia
           muelleri GWSS]
          Length = 1062

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       ++ +                       V  ++   KP   F 
Sbjct: 25  SGTQALKALKEENIFTILVNPNIATVQTSEKIADKIYSLPITPFFVEKIIKKEKPQGIFI 84

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G +     + +   +    + I     S D+   +Q++ + G+ +  SI 
Sbjct: 85  SFGGQTALNCGIELYNSGVFKKNNVKVLGTPISYIIKSEDRDIFRQMLINRGINIAKSIA 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+ + I  P +I+       LG  + K    +    + S + ++  Q+LIE+
Sbjct: 145 VNSVSEAIDASNEIVFPLIIRSAYALGGLGSGLAKNVYELKK--ISSVALSYSSQILIEE 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D         +     +                ++ Y +++ +
Sbjct: 203 SLKGWKEIEYEVVRDIYDNCITVCNMENIDPIGIHTGDSIVVAPSQTLNNIE-YNKLRFI 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +     G     F     S K   +EIN +  ++  S     +   GY   
Sbjct: 262 AIKIARYFNIIGECNVQFALSNNSYKYNVIEINAR--LSRSS--ALASKATGYPLA 313



 Score = 40.6 bits (93), Expect = 0.29,   Method: Composition-based stats.
 Identities = 44/321 (13%), Positives = 107/321 (33%), Gaps = 44/321 (13%)

Query: 3   VLMG------GISSERE---VSLSSGKACASALEDAGFKVSQIDVDRS------------ 41
           V++G      G S E +   VS          L+  G++   I+ +              
Sbjct: 562 VILGSGVYRIGSSVEFDWCCVS------VLDFLKKEGYRSVIINYNPETVSTDFDVCDRL 615

Query: 42  ---------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    V  ++    P+     + G    +  +    + ++I  T    +       
Sbjct: 616 YFEELSLERVLDIIELENPEGTVISMGGQITNNLSLNLYKKKVKILGTSPINIDEVEDRY 675

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P    +       +   L+  P +I+P    S   + ++    ++ L
Sbjct: 676 KFSKFLDKLDILQPKWKELSNISDVYNFIKLVGFPIIIRPSYVLSGAAMNIVFDKSNLDL 735

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            L Q+ + +H   ++I ++++  +         +  +   A+   +   Y   +S   + 
Sbjct: 736 CLKQAKTISHKYPIVITKFIENAKEIELDAVANNGKIIYDAIS--EHIEYAGVHSGDATL 793

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
              P  I L+  K+++ ++    +     G     FL+     K+  +E N    +    
Sbjct: 794 VYPPQNISLNTIKKIKNISKKISKRFNISGPFNIQFLYKKK--KIQVIECN----LRASR 847

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
            FP ++  + ++  EL + ++
Sbjct: 848 SFPFISKVSHFNMVELAMKVL 868


>gi|1168773|sp|P46056|CARB_TRICU RecName: Full=Carbamoyl-phosphate synthase arginine-specific large
           chain; AltName: Full=Arginine-specific
           carbamoyl-phosphate synthetase, ammonia chain
 gi|531114|gb|AAA21443.1| carbamoyl phosphate synthetase large subunit [Trichosporon
           cutaneum]
          Length = 1176

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/296 (14%), Positives = 89/296 (30%), Gaps = 36/296 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL ++  +   I+ +                       V  VL   +PD    
Sbjct: 97  SGSQAIKALRESNIETILINPNIATIQTSHHLASEIYFLPVTADYVAYVLEKERPDGILL 156

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
              G    +         +LE L +    + I    +S D+    Q ++   +P   S  
Sbjct: 157 TFGGQSALNVGIQLEKMGVLERLGVQVLGTPIRTLEISEDRDLFVQALNEIDIPAAQSTA 216

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   I  P +++       LG     +      +L   ++ +      +  
Sbjct: 217 VSTIQDALDAAKTIGYPIILRSAFSLGGLGSFPHDE-----EELRNLAAKSLSLSPQVLI 271

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                                  +  +      L   + +S  V P++   D Y  ++  
Sbjct: 272 EKSLKGWKEVEYEVVRDAADNTIICCNMENFDPLGTHTGDSIVVAPSQTLTDEYHMLRSA 331

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +  DP SR    +E+N +  ++  S     +   GY   
Sbjct: 332 AIKIVRHVGVVGECNVQYALDPNSRDYRVIEMNAR--LSRSS--ALASKATGYPLA 383


>gi|329894588|ref|ZP_08270394.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC3088]
 gi|328922942|gb|EGG30270.1| Biotin carboxylase of acetyl-CoA carboxylase [gamma proteobacterium
           IMCC3088]
          Length = 448

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 50/150 (33%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ V+  + ++   +  + S     +      + +      
Sbjct: 151 ARRIGYPVIVKAAAGGGGRGMRVVHNEAALLSSVQVTQSEAAAAFGSDVVYIEKYLQRPR 210

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D    V  +            K         +P     ++ + V      A 
Sbjct: 211 HVEIQVLADGQGGVVHLGDRDCSLQRRHQKVIEEAPAPGIPD----ELRQAVGESCVNAC 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG RG    +FL+       +++E+N +
Sbjct: 267 KTIGYRGAGTFEFLY--EDGGFYFIEMNTR 294


>gi|110679314|ref|YP_682321.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter denitrificans
           OCh 114]
 gi|109455430|gb|ABG31635.1| propionyl-CoA carboxylase, alpha subunit [Roseobacter denitrificans
           OCh 114]
          Length = 681

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 24/178 (13%), Positives = 50/178 (28%), Gaps = 21/178 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   D         S +           +++        +   
Sbjct: 153 YPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L  T             ++  +       P+    +  ++     A    QA+G     
Sbjct: 213 VLCDTHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQAVALAQAVGYASAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
             +F+ D      ++LE+N +              +       G    +L+  M+  A
Sbjct: 273 TVEFIVDGDKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRVA 316


>gi|331008554|gb|EGH88610.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 649

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|332716280|ref|YP_004443746.1| 3-methylcrotonyl-CoA carboxylase subunit alpha [Agrobacterium sp.
           H13-3]
 gi|325062965|gb|ADY66655.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium sp.
           H13-3]
          Length = 661

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 26/150 (17%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ ++++ +    +L  +       + +   L+ +      
Sbjct: 148 AEAIGYPVLLKASAGGGGKGMRIVREKREFAAELAGAKREALAAFGNDRMLIEKYLERPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            K         LP      + + +   A  A 
Sbjct: 208 HVEVQVFADGHGNCLSLFERDCSIQRRHQKVIEEAPAPGLPDT----LRQRMYDAAVAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI  RG    +FL DP S + +++E+N +
Sbjct: 264 RAIDYRGAGTVEFLLDP-SGEFYFMEMNTR 292


>gi|223999327|ref|XP_002289336.1| CPSase [Thalassiosira pseudonana CCMP1335]
 gi|220974544|gb|EED92873.1| CPSase [Thalassiosira pseudonana CCMP1335]
          Length = 1485

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/318 (11%), Positives = 91/318 (28%), Gaps = 47/318 (14%)

Query: 6   GGIS----SEREVSLSSGKACASALEDAGFKVSQIDVD---------------------- 39
           GG S     E +    SG     AL++ G +V  ++ +                      
Sbjct: 406 GGTSIGQAGEFD---YSGGQAIKALKEEGKEVVLMNPNIASVQTNMDDKSSHNKADHTYF 462

Query: 40  -----RSVGLVLAHLKPDLAFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALS 90
                  V  ++   KP+     + G        +     I +   +    + I +   +
Sbjct: 463 LPVTPDFVEEIIKKEKPEGIVVSMGGQTALNCAVELYKAGIFDKYNVQVLGTPIESVINT 522

Query: 91  MDKMRSKQVVS--SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
            D+      +   +  +    +       + +      P +I+       LG  +     
Sbjct: 523 EDRQLFSDRLHEINEKIAESYTAENIEDAVIAAGKTGYPLMIRSAFALGGLGSGICVD-- 580

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
              L      +     Q+L+E+ + G            +    + V   + +     ++ 
Sbjct: 581 EAHLRENAKKALATSPQILVEKSMLGW-KEVEYEVVRDIYDNCVTVCNMENFDPLGIHTG 639

Query: 209 LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM 268
            +        +  + Y  ++  A    + +G  G     +   P S +   +E+N +  +
Sbjct: 640 DSIVMAPSQTLSDEEYHMLRETAIRVVKHLGIVGECNIQYALHPTSLEYCIIEVNAR--L 697

Query: 269 TPVSIFPEMAAYAGYSFR 286
           +  S     +   GY   
Sbjct: 698 SRSS--ALASKATGYPLA 713


>gi|91223952|ref|ZP_01259216.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio alginolyticus
           12G01]
 gi|91191444|gb|EAS77709.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio alginolyticus
           12G01]
          Length = 391

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 78/283 (27%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                +D     ++  V+A  +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYANAPAMQVAHRSYVIDMLDGNALEEVIAKEQPTYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P   +  L       +  + + +                  
Sbjct: 82  EAIATGKLVELEEKGLNVVPTAKATRLTMNREGIRRLAAEELELTT-SPYRFADNFEDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK +  +        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKTEDDVTKA--WDYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTIRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENAVKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|38679967|ref|NP_942133.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapiens]
 gi|38679977|ref|NP_942136.1| acetyl-CoA carboxylase 1 isoform 2 [Homo sapiens]
 gi|118601083|sp|Q13085|ACACA_HUMAN RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; AltName:
           Full=ACC-alpha; Includes: RecName: Full=Biotin
           carboxylase
 gi|37930492|gb|AAP69841.1| acetyl-CoA carboxylase alpha [Homo sapiens]
 gi|119577981|gb|EAW57577.1| hCG30204, isoform CRA_b [Homo sapiens]
 gi|119577982|gb|EAW57578.1| hCG30204, isoform CRA_b [Homo sapiens]
 gi|119577985|gb|EAW57581.1| hCG30204, isoform CRA_b [Homo sapiens]
 gi|119577986|gb|EAW57582.1| hCG30204, isoform CRA_b [Homo sapiens]
 gi|190192204|dbj|BAG48316.1| acetyl-Coenzyme A carboxylase alpha [Homo sapiens]
          Length = 2346

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|27378749|ref|NP_770278.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bradyrhizobium
           japonicum USDA 110]
 gi|27351898|dbj|BAC48903.1| unnamed protein product [Bradyrhizobium japonicum USDA 110]
          Length = 451

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 3/151 (1%)

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
                   I  P +IK   GG   G+ +++ + ++   L  + +           Y++  
Sbjct: 144 EVHAIARDIGYPVIIKAAGGGGGRGMRIVRSEGALDDALALTRAEASKAFKNAAVYIEKF 203

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLA 234
                 +    L                L+  +       PA  I   + + V      A
Sbjct: 204 LEKPRHIEIQVLCDQHDNHLWLGDRDCSLQRRNQKVVEEAPAPGIDRALIERVGASCVEA 263

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + IG RG    +FL+   + + F++E+N +
Sbjct: 264 CRRIGYRGAGTFEFLY--ENGQFFFIEMNTR 292


>gi|332679037|gb|AEE88166.1| Phosphoribosylglycinamide formyltransferase 2 [Francisella cf.
           novicida Fx1]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNADALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQELNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMSDTALAKSQGIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|301632712|ref|XP_002945425.1| PREDICTED: biotin carboxylase-like, partial [Xenopus (Silurana)
           tropicalis]
          Length = 446

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 56/179 (31%), Gaps = 17/179 (9%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   GI V   + S+  ++  + +           Y++        +
Sbjct: 145 RIGYPVMIKAAAGGGGRGIRVASDEASLRREMATAQAEASAAFGNGAVYLERCIARARHI 204

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
               L   +  V   +      +             I       +   A    +A+   G
Sbjct: 205 EVQILGDGQEVVHCFERECSLQRRRQKIWEEAPSPAIDAATRTRLCESAVRLARAVRYSG 264

Query: 243 ISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
               ++L D  + + F++E+N       P +T +          G    +L+  M+  A
Sbjct: 265 AGTLEYLLDEATGEFFFIEMNTRIQVEHP-ITEM--------VTGI---DLVREMLRIA 311


>gi|288961680|ref|YP_003451990.1| phosphoribosylglycinamide formyltransferase 2 [Azospirillum sp.
           B510]
 gi|288913960|dbj|BAI75446.1| phosphoribosylglycinamide formyltransferase 2 [Azospirillum sp.
           B510]
          Length = 389

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 37/303 (12%), Positives = 79/303 (26%), Gaps = 38/303 (12%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    A +  G +V   D                       ++   +A  +PD     +
Sbjct: 15  GKEFVIAAKRLGCEVIACDSYANAPAMQVADRAEVFSMLDADALRAAIAKHRPDYIVPEV 74

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E          + +P   +  +       +  +   +                  
Sbjct: 75  EAIRTEVLHEFEDAGTIVVPSARAATMTMNRDRIREVAATELGLRT-SRYRYAESLEEVR 133

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-SSSWNHGDQLLIEQYVDGIEL 177
                   P VIKP+   S  G   ++    +        ++     + +I +     + 
Sbjct: 134 AGADHTGFPCVIKPVMSSSGKGQSTVRDAAGLEAAWDYAVANMRGDRRKVIVEEFVPFDY 193

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   + D      P                    P  +P  +  + + +A      
Sbjct: 194 EITLLTVRTRDGILYCEPIGHRQE-----RGDYQESWQPVAMPQAMLDDAKAMAARVVDN 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAYA-GYSFREL 288
           +G  GI   +F       +V + E++ +P   GM       +S F   A    G     +
Sbjct: 249 LGGYGIFGVEFFVTA--DEVVFSELSPRPHDTGMVTLLSQNLSEFELHARAILGLPIPNI 306

Query: 289 LLW 291
           +  
Sbjct: 307 VCR 309


>gi|299823001|ref|ZP_07054887.1| acetyl-CoA carboxylase subunit A [Listeria grayi DSM 20601]
 gi|299816530|gb|EFI83768.1| acetyl-CoA carboxylase subunit A [Listeria grayi DSM 20601]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AKKIGYPVIIKATAGGGGKGIRVAEDEEKLVSGIQMTQQEAEAAFGDPGVYIEKYIQDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADNHGNVIHLGERDCSVQRRLQKLIEESPSPAIDEKMRQKMGKAAVKAAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D    K +++E+N +
Sbjct: 268 YSGAGTIEFIYDHHEHKFYFMEMNTR 293


>gi|219125606|ref|XP_002183067.1| acetyl-coa carboxylase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217405342|gb|EEC45285.1| acetyl-coa carboxylase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 2092

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 29/139 (20%), Positives = 55/139 (39%), Gaps = 5/139 (3%)

Query: 128 YVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDAS 186
            +IK  +GG   GI  +  ++ +    +Q  S   G  + I Q   +   L   ++GD  
Sbjct: 283 LMIKASEGGGGKGIRFVDNEEDLRNAFIQVQSEVIGSPIFIMQLCKNARHLEVQIVGDEH 342

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRS 246
            +   +            +          P    +D + E+Q+ A    Q IG  G    
Sbjct: 343 GNAVALNGRDCSTQ----RRFQKIFEEGPPTIAKVDTFDEMQKAAQRLTQTIGYVGAGTV 398

Query: 247 DFLFDPLSRKVFWLEINVQ 265
           ++L++  + K F+LE+N +
Sbjct: 399 EYLYNAATDKYFFLELNPR 417


>gi|208780136|ref|ZP_03247479.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           FTG]
 gi|208744140|gb|EDZ90441.1| phosphoribosylglycinamide formyltransferase 2 [Francisella novicida
           FTG]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 76/248 (30%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++    P      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNADALEQLILAKNPTYIVPEIEAINTDSLVKLEAHNFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + Q ++             +  +D    I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRALAAQELNLQT-SKFAFANSEQEYLDVIQSIGLPFVIKPVMSSSGKGQSIVKEHN 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + + + G             +      D   ++T + V   D  S+      
Sbjct: 166 EIKKAWDYAQNGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGTSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHTMSDTALAKSQGIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|88811325|ref|ZP_01126580.1| acetyl-CoA carboxylase [Nitrococcus mobilis Nb-231]
 gi|88791214|gb|EAR22326.1| acetyl-CoA carboxylase [Nitrococcus mobilis Nb-231]
          Length = 447

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+      +E     +         L  DK+ + + +   G+P  P    
Sbjct: 77  AIHPGYGFLAENAGFVERVESSGFVFIGPRAETIQLMGDKVSAIRAMQDAGIPCVPGSDG 136

Query: 114 NRFTMDSQH-----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                   +      I  P +IK   GG   G+ V+  + S+   +  + +         
Sbjct: 137 PVGDDAEANLRLAAEIGYPVIIKAAAGGGGRGMRVVHSEASLLHAIAVTRAEARAAFGSD 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y++        +    L                ++          P   I  +  + +
Sbjct: 197 TVYMEKFLERPRHIEIQVLADQYGNAIHLGERDCSMQRRHQKVAEESPAPGITAEQRQAI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +    A Q IG  G    +FL+       F++E+N +
Sbjct: 257 GQRCADACQEIGYCGAGTFEFLY--QDGNFFFIEMNTR 292


>gi|296314312|ref|ZP_06864253.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           polysaccharea ATCC 43768]
 gi|296838973|gb|EFH22911.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           polysaccharea ATCC 43768]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEKERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|294495838|ref|YP_003542331.1| hypothetical protein Mmah_1181 [Methanohalophilus mahii DSM 5219]
 gi|292666837|gb|ADE36686.1| protein of unknown function DUF201 [Methanohalophilus mahii DSM
           5219]
          Length = 379

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 31/263 (11%), Positives = 84/263 (31%), Gaps = 21/263 (7%)

Query: 18  SGKACASALEDAGFKVSQIDV--DRSV-----------GLVLAHLKPDLAFNVLHGN--F 62
           S +  A +   AG+ V  ID   DR +              +  ++ +    ++      
Sbjct: 10  SSRNIACSASKAGYNVYAIDAFCDRDLEYNTCKCHALMEEDIHEVEREEIVRIMDNFEKD 69

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
            +  ++ +  E ++       +L +++   +  S +   +  +              +  
Sbjct: 70  FDGVVLGSGFEKIDREIFDCPVLNNSVRQMETVSDKKRFAEELQKIGIPHPQTHAATNPP 129

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDGIELTCG 180
            I  P ++KP  GG  +   ++     +   +           ++L+++++V G   +  
Sbjct: 130 QIDTPMILKPAIGGGGVFNKIVTSADELEYQIDDICKAGNFKPEELILQEFVHGTGASVS 189

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           +  +        A  +     +          ++ P + P +       +     +    
Sbjct: 190 MTSNGKQATAIAANEQLIGIPWLTNMPFAYCGNITPMQTPHENEMIEICVK--LCKHFEL 247

Query: 241 RGISRSDFLFDPLSRKVFWLEIN 263
           +G +  DF+          LEIN
Sbjct: 248 KGSNGMDFIITEKG--PMVLEIN 268


>gi|312116104|ref|YP_004013700.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodomicrobium
           vannielii ATCC 17100]
 gi|311221233|gb|ADP72601.1| acetyl-CoA carboxylase, biotin carboxylase [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 446

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 47/250 (18%), Positives = 87/250 (34%), Gaps = 21/250 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH   G   E+     ILE   + +         L  DK+R+K+     G+PV P    
Sbjct: 77  ALHPGYGFLSENARFAEILEEHGVTFIGPTPEHMRLMGDKIRAKETAKELGIPVVPGSGG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  N   +     I  P ++K   GG   G+ V + +  +P+ L  + + +        
Sbjct: 137 AVTTNEEAIAIAREIGFPVLVKAAAGGGGRGMKVARTEAELPIALSTARAESKAAFGDDA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    +   +            L+          P+    +   KE+ 
Sbjct: 197 LYLERYLSKPRHIEIQVIGDGKGNAVYLGERDCSLQRRHQKILEETPSPALNEAQRKEIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QP---GMTPVSIFPEM--- 277
                A + +  R     +FL+     + F++E+N       P    +T + +  E    
Sbjct: 257 ETVARAMRKLKYRNAGTVEFLY--EDGEFFFIEMNTRLQVEHPVTEMVTGIDLVIEQIQI 314

Query: 278 AAYAGYSFRE 287
           AA AG SF +
Sbjct: 315 AAGAGLSFTQ 324


>gi|134046581|ref|YP_001098066.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C5]
 gi|172044145|sp|A4G068|PURT_METM5 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|132664206|gb|ABO35852.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Methanococcus maripaludis C5]
          Length = 388

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/248 (14%), Positives = 73/248 (29%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+  +  +  V+   KPDL    +     +            +P  ++  L   
Sbjct: 52  HRFHVIDMKDAGALREVIEREKPDLIVPEIEAINTDTLKEMETEGYHVVPTANATKLTMD 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + + +                  ++   I  P +IKP+   S  G   IK + 
Sbjct: 112 REGIRRLAFEKLGLRT-AKYEFAENLEELKEAVQRIGIPCIIKPIMSSSGKGQSTIKSEG 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + S   G          G ++          ++T +    ++   +      
Sbjct: 171 DIEKSWDYAKSAARG---------IGTKVIVEEFIKFDYEITLLTARTAEGTRFCEPIGH 221

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 222 IQIDGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|313680545|ref|YP_004058284.1| acetyl-CoA carboxylase, biotin carboxylase [Oceanithermus profundus
           DSM 14977]
 gi|313153260|gb|ADR37111.1| acetyl-CoA carboxylase, biotin carboxylase [Oceanithermus profundus
           DSM 14977]
          Length = 446

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 50/145 (34%), Gaps = 2/145 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+   + +   +LQ+           E Y++   +   
Sbjct: 147 ASEIGYPVILKASAGGGGRGMRVVHNPEDLENAVLQAQEEARAAFGNPEIYLE-KYVEEP 205

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
              +  +      V         ++          P+ +P ++ + +   A    + IG 
Sbjct: 206 KHVEVQVLGDGERVVHLWERDCSIQRRHQKLLEEAPSILPDEVREGLVSAAVKLAEHIGY 265

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 +FL D      +++E+N +
Sbjct: 266 TSAGTLEFLVDRE-GHYYFIEMNTR 289


>gi|300917423|ref|ZP_07134088.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 115-1]
 gi|300415333|gb|EFJ98643.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Escherichia
           coli MS 115-1]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAPSVKSYLNIPAIISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENANFAEQVERSGFIFIGPKADTIRLMGDKVSAIAAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                             I  P +IK   GG   G+ V++ D  +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIAKRIGYPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           ++    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 SNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ + +      A   IG RG    +FLF   + + +++E+N +
Sbjct: 250 PELRRYIGERCAKACVDIGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|298487192|ref|ZP_07005241.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
 gi|298158216|gb|EFH99287.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
          Length = 649

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|226290917|gb|EEH46345.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb18]
          Length = 1181

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 185

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 186 TFGGQTALNLGVQLNRMGVFERHGVKVLGTSIRTLEVSEDRDLFSKALNEINIPIAESVA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 246 VNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELKN--LSSRSLTLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|225679204|gb|EEH17488.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Paracoccidioides brasiliensis Pb03]
          Length = 1181

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 40/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG K   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVKSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIEREQPDGIFL 185

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L  +   D         +  +    +
Sbjct: 186 TFGGQTALNLGVQLNRMGVFERHGVKVLGTSIRTLEVSEDRDLFSKALNEINIPIAESVA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG       + +    L S S     Q+L+E+
Sbjct: 246 VNSVDEALEAADKIGYPIIVRSAYALGGLGSGFASNAEELKN--LSSRSLTLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAANNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|197116673|ref|YP_002137100.1| pyruvate carboxylase [Geobacter bemidjiensis Bem]
 gi|197086033|gb|ACH37304.1| pyruvate carboxylase [Geobacter bemidjiensis Bem]
          Length = 1148

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +D  +  +    + D      +G   E+       E   I +            DK+ 
Sbjct: 66  LGIDE-IIALAKKREVDAIHPG-YGFLAENAEFAEKCEANGIAFIGPTAEMQRALGDKVA 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++V  + GV   P     I      +        P +IK   GG   G+ V    + + 
Sbjct: 124 ARKVAKAAGVTTVPGTEEPITHEEDALIFAKNHGYPIIIKAAAGGGGRGMRVATDKKELL 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L  +SS           +++        +    L      +         ++      
Sbjct: 184 EGLQSASSEAKAAFGDPSVFLERYLKNPKHIEVQVLGDAYGNLVHFYERDCSIQRRHQKV 243

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+   P      +   A      +G R     +FL D    K +++E+N +
Sbjct: 244 VEFAPSLALPGATRLALCTDALKIANQVGYRNAGTVEFLLDE-DGKYYFIEMNPR 297


>gi|295399122|ref|ZP_06809104.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
 gi|294978588|gb|EFG54184.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus
           thermoglucosidasius C56-YS93]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 20/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   GI V + +Q +   +  +             Y++       
Sbjct: 148 ANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +   V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADSYGNVIHLGERDCSIQRRLQKLVEEAPSPALDEETRQKMGQAAVQAARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
             G    +F+FD  ++K +++E+N +              +       G    +L+   +
Sbjct: 268 YTGAGTVEFIFDYRAKKFYFMEMNTR----------IQVEHPVTELITGI---DLIKEQI 314

Query: 294 EDASCLR 300
             AS  +
Sbjct: 315 RIASGEK 321


>gi|222086079|ref|YP_002544611.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
 gi|221723527|gb|ACM26683.1| acetyl-CoA carboxylase, biotin carboxylase [Agrobacterium
           radiobacter K84]
          Length = 674

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/250 (14%), Positives = 76/250 (30%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E       LE   I +      A     DK+ SK+  ++  V   P  L      
Sbjct: 87  YGFLSERASFCEALEKEGIIFIGPKPKAIKAMGDKIESKKFANAAKVSTVPGYLGVIDDA 146

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           D    I+     P +IK   GG   G+ +      +     ++ S           +++ 
Sbjct: 147 DHAEKIAGEIGYPVMIKASAGGGGKGMRIAWSKDEVRDGFDRARSEAKSSFGDDRVFIEK 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 207 FVVDPRHIEIQVLADGHGNVVYLGERECSIQRRNQKVAEEAPSPFLDEATRKAMGEQSVA 266

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 267 LAKAVDYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELITGI---D 312

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 313 LVEQMIRVAA 322


>gi|74317573|ref|YP_315313.1| pyruvate carboxylase subunit A [Thiobacillus denitrificans ATCC
           25259]
 gi|74057068|gb|AAZ97508.1| acetyl-CoA carboxylase, biotin carboxylase [Thiobacillus
           denitrificans ATCC 25259]
          Length = 472

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 54/146 (36%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   GI     +  +  +  +  S         E +V+   +   
Sbjct: 147 ANQIGYPVMLKATNGGGGRGIRRCDSEDELLKNYDRVVSEASKAFGKPEVFVEKCVVHPK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T+  +         ++  +     + P+    +   + + +LA  A +A+G
Sbjct: 207 HIEVQILGDTQGNIIHLFERDCSIQRRNQKLIEIAPSPQLTEAQRQYIGKLAVRAAKAVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D    + +++E+N +
Sbjct: 267 YVNAGTVEFLLD-QDNQFYFMEMNTR 291


>gi|15644998|ref|NP_207168.1| biotin carboxylase [Helicobacter pylori 26695]
 gi|2313468|gb|AAD07434.1| biotin carboxylase (accC) [Helicobacter pylori 26695]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 43/263 (16%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 146 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 205

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 265

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            + +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 266 RERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 315

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
              +G +   L+ WM++ A   +
Sbjct: 316 EMVSGLN---LIEWMIKIAQGEK 335


>gi|849083|gb|AAC50139.1| acetyl-CoA carboxylase [Homo sapiens]
 gi|1096587|prf||2111499A Ac-CoA carboxylase
          Length = 2346

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLKAAEKVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|260174634|ref|ZP_05761046.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp. D2]
 gi|293369731|ref|ZP_06616307.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CMC 3f]
 gi|315922898|ref|ZP_07919138.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|292635153|gb|EFF53669.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides ovatus
           SD CMC 3f]
 gi|313696773|gb|EFS33608.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 389

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 17/255 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
               A       F+V  +     +  V+   +PD+    +      + L     E +++ 
Sbjct: 39  AMQVADE-----FEVFDMLNGEELERVVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVV 92

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +  +                               ++   I  P V+KPL   S 
Sbjct: 93  PSARAVNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSG 152

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G  ++K    +        S + GD  +L+IE+++        +        T    P 
Sbjct: 153 KGQSLVKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPI 212

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                      S    H+ PA +           A    +A+   G+   +F        
Sbjct: 213 GHVQKGGDYRESFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLS-HDNG 266

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 267 VYFSELSPRPHDTGM 281


>gi|237718131|ref|ZP_04548612.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_2_4]
 gi|229452552|gb|EEO58343.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_2_4]
          Length = 388

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 38/255 (14%), Positives = 76/255 (29%), Gaps = 17/255 (6%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
               A       F+V  +     +  V+   +PD+    +      + L     E +++ 
Sbjct: 38  AMQVADE-----FEVFDMLNGEELERVVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVV 91

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
            +   +  +                               ++   I  P V+KPL   S 
Sbjct: 92  PSARAVNFTMNRKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSG 151

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
            G  ++K    +        S + GD  +L+IE+++        +        T    P 
Sbjct: 152 KGQSLVKSADELEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPI 211

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                      S    H+ PA +           A    +A+   G+   +F        
Sbjct: 212 GHVQKGGDYRESFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLS-HDNG 265

Query: 257 VFWLEINVQP---GM 268
           V++ E++ +P   GM
Sbjct: 266 VYFSELSPRPHDTGM 280


>gi|261364175|ref|ZP_05977058.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           mucosa ATCC 25996]
 gi|288567780|gb|EFC89340.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           mucosa ATCC 25996]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 36/218 (16%), Positives = 71/218 (32%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEQSGFIFIGPKAETIRLMGDKVSAKHAMIEAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    + +   +  P +IK   GG   G+ V++K + +   +  + +         
Sbjct: 137 ALSDDPAEILKTADKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L                ++          PA    +  +E  
Sbjct: 197 MVYMERYLQRPRHVEIQVLADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFIDEKAREKI 256

Query: 229 RLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A   A + IG RG    +FL+   + + F++E+N +
Sbjct: 257 GKACTDACKRIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|224418475|ref|ZP_03656481.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253827789|ref|ZP_04870674.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313142006|ref|ZP_07804199.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253511195|gb|EES89854.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313131037|gb|EFR48654.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
          Length = 473

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/156 (12%), Positives = 51/156 (32%), Gaps = 10/156 (6%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIE 169
                    I  P ++K   GG   GI V++++  +              + + D  + +
Sbjct: 142 YEIQKIARKIGYPVILKASSGGGGRGIRVVQEESELENAFNACKREALTFFKNDDVFMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +V  +            +             +  D+ + +  
Sbjct: 202 YIQNPKHIEFQILADNYGNVIHLLERDCSIQ----RRHQKLIEIAPCPTMSADLRRRMGV 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A  A +A         +FL D  +   +++E+N +
Sbjct: 258 VAVAAAKAANYTNAGTIEFLIDDSNN-FYFMEMNTR 292


>gi|326477123|gb|EGE01133.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Trichophyton equinum CBS 127.97]
          Length = 1185

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 84/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVRSVLINPNIATIQTDHKLADEVYYLPVTPEYVSYVIEREQPDGIFL 185

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 186 AFGGQTALNLGVQMNRMGIFDRYGVRVLGTSIKTLETSEDRDLFARALNEINIPIAESIA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG         +    L S S     Q+L+E+
Sbjct: 246 VSSVDDALAAADKIGYPIIVRSAYALGGLGSGFASNPDELRD--LSSRSLTLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|326472012|gb|EGD96021.1| carbamoyl-phosphate synthase [Trichophyton tonsurans CBS 112818]
          Length = 1185

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 84/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 126 SGSQALKALKEAGVRSVLINPNIATIQTDHKLADEVYYLPVTPEYVSYVIEREQPDGIFL 185

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 186 AFGGQTALNLGVQMNRMGIFDRYGVRVLGTSIKTLETSEDRDLFARALNEINIPIAESIA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG         +    L S S     Q+L+E+
Sbjct: 246 VSSVDDALAAADKIGYPIIVRSAYALGGLGSGFASNPDELRD--LSSRSLTLAPQILVEK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 363 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 414


>gi|313199800|ref|YP_004038458.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
 gi|312439116|gb|ADQ83222.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 46/146 (31%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 AKEIGYPVIIKAAGGGGGRGMRVVHTEAALLNSVSMTKAEAGAAFGNPTVYMEKFLEQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                ++          PA       +E        A + I 
Sbjct: 209 HIEIQVLSDEHGNAVYLGERDCSMQRRHQKVLEEAPAPGITQKMREKIGERCADACRRIN 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|261407507|ref|YP_003243748.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus sp.
           Y412MC10]
 gi|261283970|gb|ACX65941.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus sp.
           Y412MC10]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 34/268 (12%), Positives = 74/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                +D      +  ++   KPDL    +
Sbjct: 16  GKEVVIEAQRLGVQTVAVDRYADAPAMHVADHSHVIDMLDGEKLRAIIELEKPDLIVPEI 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 + +         IP   +  L       +  + + +                  
Sbjct: 76  EALATAELVKLEDEGFRVIPTARAAKLTMDREGIRRLASEELGLPT-AEYRFADTYEEFK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            S   +  P VIKPL   S  G  V + +  I       +    G ++   + +    ++
Sbjct: 135 QSVLDMGFPCVIKPLMSSSGKGQSVCRSEGDIES---CWNIAMEGGRVQNGRVIIEEFIS 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                      +           +  + S        P  +     +E + +A      +
Sbjct: 192 FQSEITLLTVRSVNGTSFCAPIGHI-QESGDYIESWQPHDMSEAQIEEAKYIARKITDEL 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +        KV++ E++ +P
Sbjct: 251 GGYGLFGVELFLAE--DKVYFSEVSPRP 276


>gi|261839817|gb|ACX99582.1| biotin carboxylase [Helicobacter pylori 52]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|312110276|ref|YP_003988592.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
 gi|311215377|gb|ADP73981.1| acetyl-CoA carboxylase, biotin carboxylase [Geobacillus sp.
           Y4.1MC1]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 62/187 (33%), Gaps = 20/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   GI V + +Q +   +  +             Y++       
Sbjct: 148 ANEIGYPVIIKATAGGGGKGIRVARNEQELVKGINITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L  +   V         ++          P+    +  ++   + A  A +A+ 
Sbjct: 208 HVEIQVLADSYGNVIHLGERDCSIQRRLQKLVEEAPSPALDEETRQKMGQAAVQAARAVN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
             G    +F+FD  ++K +++E+N +              +       G    +L+   +
Sbjct: 268 YTGAGTVEFIFDYRAKKFYFMEMNTR----------IQVEHPVTELITGI---DLIKEQI 314

Query: 294 EDASCLR 300
             AS  +
Sbjct: 315 RIASGEK 321


>gi|226293828|gb|EEH49248.1| acetyl-CoA carboxylase [Paracoccidioides brasiliensis Pb18]
          Length = 2285

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +         +  ++   +I  P ++K  +GG   GI  + +++        ++S   G
Sbjct: 207 HIYDKGCTHSPQEGLEKARIIGFPVMVKASEGGGGKGIRKVDREEDFINLYNAAASEIPG 266

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +   +   L   ++ D   +   +            +                +
Sbjct: 267 SPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKPE 322

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 323 TFRAMERAAVRLGKLVGYVSAGTVEYLYSHADDKFYFLELNPR 365


>gi|295657509|ref|XP_002789322.1| acetyl-CoA carboxylase [Paracoccidioides brasiliensis Pb01]
 gi|226283896|gb|EEH39462.1| acetyl-CoA carboxylase [Paracoccidioides brasiliensis Pb01]
          Length = 2272

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +         +  ++   +I  P ++K  +GG   GI  + +++        ++S   G
Sbjct: 220 HIYDKGCTHSPQEGLEKARIIGFPVMVKASEGGGGKGIRKVDREEDFINLYNAAASEIPG 279

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +   +   L   ++ D   +   +            +                +
Sbjct: 280 SPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKPE 335

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 336 TFRAMERAAVRLGKLVGYVSAGTVEYLYSHADDKFYFLELNPR 378


>gi|225684207|gb|EEH22491.1| acetyl-CoA carboxylase [Paracoccidioides brasiliensis Pb03]
          Length = 2298

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +         +  ++   +I  P ++K  +GG   GI  + +++        ++S   G
Sbjct: 220 HIYDKGCTHSPQEGLEKARIIGFPVMVKASEGGGGKGIRKVDREEDFINLYNAAASEIPG 279

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +   +   L   ++ D   +   +            +                +
Sbjct: 280 SPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKPE 335

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 336 TFRAMERAAVRLGKLVGYVSAGTVEYLYSHADDKFYFLELNPR 378


>gi|163757959|ref|ZP_02165048.1| putative propionyl-CoA carboxylase alpha subunit [Hoeflea
           phototrophica DFL-43]
 gi|162285461|gb|EDQ35743.1| putative propionyl-CoA carboxylase alpha subunit [Hoeflea
           phototrophica DFL-43]
          Length = 668

 Score = 46.4 bits (108), Expect = 0.005,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 56/187 (29%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   D        +S S           +++       
Sbjct: 148 AAEIGYPVMIKASAGGGGKGMRIAWNDAEAREGFSRSKSEAASSFGDDRIFIEKFVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    +  +             ++  +       P+    +  ++     +    +A+ 
Sbjct: 208 HIEIQLIADSHGNAIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQSVALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D   RK ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDKH-RKFYFLEMNTR----------LQVEHPVTELITGV---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|312962859|ref|ZP_07777346.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens WH6]
 gi|311282886|gb|EFQ61480.1| Phosphoribosylglycinamide formyltransferase 2 [Pseudomonas
           fluorescens WH6]
          Length = 393

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/268 (13%), Positives = 73/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK     L+  G +V  +D            RS          +  V+   KP      +
Sbjct: 24  GKEVVIELQRLGVEVIAVDRYANAPAMQVAHRSHVINMLDGAALRAVIEAEKPHFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         IP   +  L       +  + + +                  
Sbjct: 84  EAIATATLVELEAEGFTVIPTARATSLTMNREGIRRLAAEELDLPT-SPYHFADTFEDYS 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  +++    +        +   G        ++G    
Sbjct: 143 KAVQDLGFPCVVKPVMSSSGKGQSLLRGTDDVQKA--WDYAQEGGRAGKGRVIIEG--FI 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V  I            +          P  +      E +R+A    +A+
Sbjct: 199 DFDYEITLLTVRHIGGTTFCAPVGHRQEKGDYQESWQPQAMSPVALAESERVAKAVTEAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G RG+   +        +V++ E++ +P
Sbjct: 259 GGRGLFGVELFI--KGDQVWFSEVSPRP 284


>gi|310658199|ref|YP_003935920.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           sticklandii DSM 519]
 gi|308824977|emb|CBH21015.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           sticklandii]
          Length = 448

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/247 (14%), Positives = 80/247 (32%), Gaps = 14/247 (5%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-DLAFN----VLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I   +S    L  +     A       +H   G   E+     + E   + +    
Sbjct: 47  EAVCIGPAKSKDSYLNSMNILSAALTTGAQAIHPGFGFLSENAKFAKMCEECNLTFIGPS 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   DK R+K+++ +  +PV P     +          + I  P +IK   GG   
Sbjct: 107 WQTINKMGDKSRAKEMMKAQKIPVIPGSDGIVKEISEGHKIANDIGYPVMIKAAAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ +   ++        +++           Y++ + +    +    L      V     
Sbjct: 167 GMRMATSEKDFENAFKNAATEAKNAFGDDGLYIEKVIVNPKHVEVQLLADKFGNVIHLGE 226

Query: 200 YSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++  +       P   I  ++ + +   A  A +A+G       +FL D      +
Sbjct: 227 RDCSVQRKNQKMVEEAPCIVISDELREAIGNDAVAAAKAVGYENAGTIEFLLD-KDGNYY 285

Query: 259 WLEINVQ 265
           ++E+N +
Sbjct: 286 FMEMNTR 292


>gi|311279250|ref|YP_003941481.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter cloacae
           SCF1]
 gi|308748445|gb|ADO48197.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter cloacae
           SCF1]
          Length = 392

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 80/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  ++A  KPD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALKALVAQEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +   +     +P   +  L       +  + + +                  
Sbjct: 84  EAIATDALMELELAGQHVVPCARATKLTMNREGIRRLAAEELQLPT-SSYRFADSEAAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   I  P ++KP+   S  G   I+ ++ +        +   G        V+G+   
Sbjct: 143 DAVAAIGLPCIVKPVMSSSGKGQSFIRHEEQLADA--WRYAQQGGRAGAGRVIVEGVVTF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++        Q++A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDTALARAQQIAREVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|307944742|ref|ZP_07660080.1| biotin carboxylase [Roseibium sp. TrichSKD4]
 gi|307771956|gb|EFO31179.1| biotin carboxylase [Roseibium sp. TrichSKD4]
          Length = 456

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/145 (13%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   GI +   +  +      + +           Y++    +  
Sbjct: 149 AQAVGYPVMIKASAGGGGRGIRIASNEVELRELAPMAQAEAKAAFGDGGLYLERAVASPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +     AV   +      +             +      ++ + A    +A+  
Sbjct: 209 HIEVQIVGDGNQAVHFYERECSLQRRRQKVWEEAGADCLDEATRDKLCQTAVALAEAVNY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++L+DP + + +++E+N +
Sbjct: 269 RGAGTLEYLYDPGANEFYFIEMNTR 293


>gi|254482851|ref|ZP_05096088.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
 gi|214036932|gb|EEB77602.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [marine gamma proteobacterium HTCC2148]
          Length = 674

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 10/147 (6%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELT 178
           +  P ++K + GG   G+  +   +     L        + + + D L+ +       + 
Sbjct: 155 MGYPVLLKAVAGGGGKGMRQVWSPEEFDEALAAARREAMNGFGNDDMLVEKYLTQPRHVE 214

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             V  D+  +   +            +             +  ++   +   A  A QAI
Sbjct: 215 VQVFCDSHGNAVYLFERDCSVQ----RRHQKVIEEAPAPGMTAELRATMGDAAIRAAQAI 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +FL D      +++E+N +
Sbjct: 271 DYEGAGTVEFLLD-SDGSFYFMEMNTR 296


>gi|261405317|ref|YP_003241558.1| phosphoribosylglycinamide synthetase, ATP-grasp (A)
           domain-containing protein [Paenibacillus sp. Y412MC10]
 gi|261281780|gb|ACX63751.1| Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain protein
           [Paenibacillus sp. Y412MC10]
          Length = 391

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/212 (19%), Positives = 88/212 (41%), Gaps = 16/212 (7%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPS--ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
           LS +K + KQ     GV       +   +    +  ++SPP + K + GG+S GI+ +  
Sbjct: 99  LSSNKWKMKQAFMKHGVRTARFLKVQTLQEAYSAFEVLSPPLIFKAVDGGASKGIVKVAD 158

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +             D  ++E++++G E         +    +  +P  DF  Y    
Sbjct: 159 MAHVEYAFETVRKDTKLDFFIVEEFIEGTEFGAQAFVYDN--QIQFIMPHGDFVFYGDTG 216

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS-RSDFLFDPLSRKVFWLEINVQ 265
             +   H +P ++P ++ +++      + +A+     +  +DF+       V+ LEI  +
Sbjct: 217 --VPIGHYVPYELPEEVQQDLFSQLKQSIEALELNHCAINADFIL--KDGHVYVLEIGGR 272

Query: 266 PGMTPVSIFPEMAA-YAGYSFRELLLWMVEDA 296
            G T     PE+ + + G+ + E    +++ A
Sbjct: 273 AGAT---CLPELVSTFYGFDYYE---QIIKAA 298


>gi|313669082|ref|YP_004049366.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           lactamica ST-640]
 gi|309379476|emb|CBX21842.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria lactamica
           Y92-1009]
 gi|313006544|emb|CBN88008.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria lactamica 020-06]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/220 (15%), Positives = 70/220 (31%), Gaps = 9/220 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+      +E     +         L  DK+ +K  + + GVP  P  
Sbjct: 76  DAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGS 134

Query: 112 L-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  +   +     +  P +IK   GG   G+ V++K + +   +  + +       
Sbjct: 135 DGALPDNDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFG 194

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    +                ++          PA    +  + 
Sbjct: 195 NPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERDCSMQRRHQKVIEEAPAPFITEKERA 254

Query: 227 VQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A   A + IG RG    +FL+     + F++E+N +
Sbjct: 255 KIGKACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|300721810|ref|YP_003711088.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           nematophila ATCC 19061]
 gi|297628305|emb|CBJ88866.1| acetyl CoA carboxylase, biotin carboxylase subunit [Xenorhabdus
           nematophila ATCC 19061]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL-----------AHLKPDLAFNVL------- 58
                 A ++ G K   +    DR +  VL           A  K  L    +       
Sbjct: 14  ALRILRACKELGIKTVAVHSSADRDLKHVLLADETVCIGPAASTKSYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ +   +    VP  P 
Sbjct: 74  CAQAIHPGYGFLSENADFAEQVERSGFVFIGPKADTIRLMGDKVSAISAMKKACVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                           + I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLGDDTEKNKTIANRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSIAMTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIY 224
                Y++        +    L   +            ++          PA  I  ++ 
Sbjct: 194 NNDMVYMEKFLENPRHVEIQVLADGQGNALYLAERDCSMQRRHQKVVEEAPAPGISPELR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RSIGERCAKACIEINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|295136440|ref|YP_003587116.1| biotin carboxylase [Zunongwangia profunda SM-A87]
 gi|294984455|gb|ADF54920.1| biotin carboxylase [Zunongwangia profunda SM-A87]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 83/252 (32%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I   +S    L              D      +G   E+     I E  +I +  +
Sbjct: 47  EAVCIGPPQSNLSYLKIANIISAAEITNADAIHPG-YGFLSENAKFSKICEEHDIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                +   DK  +K  + + GVP  P     +      +     I  P ++K   GG  
Sbjct: 106 SAEMISKMGDKATAKATMKAAGVPCVPGSEGILKDYDECLKLAKEIGFPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K++++      +       + +    + +   +   +   ++GD +     ++
Sbjct: 166 KGMRAVWKEENLQSAWDSARQEAGAAFGNDGMYMEKLIEEPRHIEIQIIGDQTGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +   + K++   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTPKLRKQMGEAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
            RK +++E+N +
Sbjct: 282 -RKFYFMEMNTR 292


>gi|220918312|ref|YP_002493616.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-1]
 gi|219956166|gb|ACL66550.1| pyruvate carboxylase [Anaeromyxobacter dehalogenans 2CP-1]
          Length = 1148

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V +  + +   L+ + S           +++      
Sbjct: 151 FAKQHGYPIIIKASAGGGGRGMRVARSQKELLEGLVSARSEARAAFGNAAVFLERYIERP 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L      +         ++          P+    +   + +   A    +++
Sbjct: 211 KHIEVQVLGDHHGELVHLFERDCSIQRRHQKVVEFAPSLALTEAQREAICGDALKIARSV 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
             R     +FL DP   + +++E+N +
Sbjct: 271 RYRNAGTVEFLVDPQ-GRHYFIEVNPR 296


>gi|153836503|ref|ZP_01989170.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio
           parahaemolyticus AQ3810]
 gi|149750101|gb|EDM60846.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio
           parahaemolyticus AQ3810]
          Length = 391

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                      +++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSYVLDMLDGKALEEIINKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +                  
Sbjct: 82  EAIATDKLVDLEEKGLNVVPTAKATKLTMNREGIRRLAAEELDLST-SPYRFADNYDDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK D  I        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKTDDDIEKA--WDYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENAIKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|25028285|ref|NP_738339.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           efficiens YS-314]
 gi|259507343|ref|ZP_05750243.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           efficiens YS-314]
 gi|81846929|sp|Q8FT42|CARB_COREF RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|23493569|dbj|BAC18539.1| putative carbamoyl-phosphate synthase large chain [Corynebacterium
           efficiens YS-314]
 gi|259165054|gb|EEW49608.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           efficiens YS-314]
          Length = 1113

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 91/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI-------------------------DVDRSVGLVLAHLKP- 51
           SG      L++ G +V+ I                          +++     +    P 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEMADHTYVEPIEPEYIEKIFQKEIEQGHPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  +Q      LE   +    + I A     D+ + K +V++ G   
Sbjct: 89  DTVLATLGGQTALNAAIQLDRLGILEKYNVELIGADIDAIERGEDRQKFKDIVATIGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +           +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSAVCHNMDEVYATVEELGLPVVVRPSFTMGGLGSGLAYTMEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDGDDNVVVICSIENVDALGVHTGDSVTVAPAMTLTDREYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAIIREVGVDTGGCNIQFAVNPEDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331


>gi|299483098|gb|ADJ19296.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Scenopinus
           fenestralis]
          Length = 978

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/303 (11%), Positives = 90/303 (29%), Gaps = 35/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 384 SGSQAIKALKEDKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 443

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + ++     V    +
Sbjct: 444 TFGGQTALNCGVELEKAGIFKKNNVKILGTPIQSIIETEDRKIFAEKIAEIGEEVAPSRA 503

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGG-SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +      + +  ++  P + +        LG         +   +L   +  H +QL+I+
Sbjct: 504 VYSVAEALKAAEILGYPVMARXAAFSLGGLGSGFANNKNELM--ILAEQALAHSNQLIID 561

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G                 I V   +       ++  +        +    Y  ++ 
Sbjct: 562 KSLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVIAPSQTLSNREYNMLRT 620

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    + 
Sbjct: 621 TAIKVIRHFGIIGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVA 676

Query: 290 LWM 292
             +
Sbjct: 677 AKL 679


>gi|302922225|ref|XP_003053421.1| predicted protein [Nectria haematococca mpVI 77-13-4]
 gi|256734362|gb|EEU47708.1| predicted protein [Nectria haematococca mpVI 77-13-4]
          Length = 1174

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 114 SGSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVTYVIEKEKPDGIFL 173

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V+       E   +    + +    LS D+    + +    +P+  SI 
Sbjct: 174 SFGGQTALNLGVEMQRLGLFEKYGVKVLGTSVRTLELSEDRDLFAKALEEIEIPIAKSIA 233

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+   +  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 234 VGTIEEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 291

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             +   I V   + +     ++  +        +  + Y  ++  
Sbjct: 292 SLKGW-KEVEYEVVRDANNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 350

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 351 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 402


>gi|218526226|gb|ACK86520.1| carbamoyl-phosphate synthase [Nothochrysa californica]
          Length = 681

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     + +  E     + I +   + D+     K       V    +
Sbjct: 188 TFGGQTALNCGVELEKAGVFKKYECKILGTPIQSIIQTEDRKLFAEKIGEIGEKVAPSAA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++ ++I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 248 VYSVDEALEAANVIGYPVMARAAFSLGGLGSGFAYNTEQLQS--LATQALAHSNQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|261378478|ref|ZP_05983051.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           cinerea ATCC 14685]
 gi|269145273|gb|EEZ71691.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           cinerea ATCC 14685]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFITEKERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|254440826|ref|ZP_05054319.1| carbamoyl-phosphate synthase, large subunit [Octadecabacter
           antarcticus 307]
 gi|198250904|gb|EDY75219.1| carbamoyl-phosphate synthase, large subunit [Octadecabacter
           antarcticus 307]
          Length = 1150

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 103/319 (32%), Gaps = 52/319 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 612 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDQGYETIMINCNPETVSTDYDTSD 664

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L+   IP   +   +  
Sbjct: 665 RLYFEPLTFEHVMEILRVEQSNGTLHGVIVQFGGQTPLKIAQALQDEGIPILGTSPDSID 724

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            + D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 725 WAEDRERFQALVNDLGLKQPHNGIASTDEQALEIADDIGFPLVIRPSYVLGGRAMEIVRD 784

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 785 MGQLKRYITSAVVVSGDSPVLLDSYLSGAIEVDVDCLSDGENTHVAGIMQHIEEAG---V 841

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS---RKVFWLEI 262
           +S  ++  + P  +  +I  E+ R       A+   G+    F          +VF +E+
Sbjct: 842 HSGDSACSLPPHTLSDEIIAEITRQTNALALALKVIGLMNVQFAVKANDQGVEEVFLIEV 901

Query: 263 NVQPGMTPVSIFPEMAAYA 281
           N +   T     P +A   
Sbjct: 902 NPRASRT----VPFVAKAT 916



 Score = 39.1 bits (89), Expect = 0.72,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQI---------DVDRSVGLVLA------------HLKPDLAFN 56
          SG     AL + G++V  +         D D +    +               +PD    
Sbjct: 29 SGAQACKALREEGYRVVLVNSNPATIMTDPDMADATYIEPITPAVVAKIMLKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93


>gi|146283541|ref|YP_001173694.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri A1501]
 gi|145571746|gb|ABP80852.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           stutzeri A1501]
          Length = 636

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 151 AEKIGYPVLLKATAGGGGKGMKVVEREADLAEALASAQREAQSSFGDSRMLVEKYVLKPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A +AIG
Sbjct: 211 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVKAAKAIG 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 271 YVGAGTVEFLLDAR-GEFFFMEMNTR 295


>gi|15612076|ref|NP_223728.1| biotin carboxylase [Helicobacter pylori J99]
 gi|4155591|gb|AAD06583.1| BIOTIN CARBOXYLASE [Helicobacter pylori J99]
          Length = 455

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKIVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|114331874|ref|YP_748096.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas eutropha
           C91]
 gi|114308888|gb|ABI60131.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Nitrosomonas eutropha C91]
          Length = 452

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/218 (14%), Positives = 68/218 (31%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI-- 111
            +H   G   E+      +E     +         L  DK+ +K  +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEKSGFFFIGPRPDTIRLMGDKVSAKHAMLQAGVPCVPGSEG 136

Query: 112 ---LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                          I  P +IK   GG   G+ V+  + ++   ++ + +         
Sbjct: 137 ALPDSLDEVRKIIKEIGYPVIIKAAGGGGGRGMRVVYTEAALSNAVITTRNEAQAAFGNP 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEV 227
             Y +        +    L                ++          P   I + +  ++
Sbjct: 197 VVYAEKYLENPRHIEFQILADEYGNTVHLGERDCSMQRRHQKIIEEAPARGISIKLRNQI 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + I  RG+   +FL+   + + +++E+N +
Sbjct: 257 GERCVEACKRINYRGVGTFEFLY--ENNEFYFIEMNTR 292


>gi|329930889|ref|ZP_08284282.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus sp.
           HGF5]
 gi|328934506|gb|EGG31014.1| phosphoribosylglycinamide formyltransferase 2 [Paenibacillus sp.
           HGF5]
          Length = 386

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 74/268 (27%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK      +  G +   +D                +D      +  ++   KPDL    +
Sbjct: 16  GKEVVIEAQRLGVQTVAVDRYANAPAMHVADHSHVIDMLDGEKLRAIIELEKPDLIVPEI 75

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                 + +         IP   +  L       +  + + +                  
Sbjct: 76  EALATSELVKLEDEGYRVIPTARAAKLTMDREGIRRLASEELGLPT-ADYRFADTYEEFK 134

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P VIKPL   S  G  V + +  I       +    G ++   + +    ++
Sbjct: 135 QAVLDMGFPCVIKPLMSSSGKGQSVCRSEGDIES---CWNIAMEGGRVQNGRVIIEEFIS 191

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                      +           +  + S        P  +     +E + +A      +
Sbjct: 192 FQSEITLLTVRSVNGTSFCAPIGHI-QESGDYIESWQPHDMSEAQIEEAKYIARKITDEL 250

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +        KV++ E++ +P
Sbjct: 251 GGYGLFGVELFLAE--DKVYFSEVSPRP 276


>gi|330801748|ref|XP_003288886.1| propionyl-CoA carboxylase [Dictyostelium purpureum]
 gi|325081079|gb|EGC34609.1| propionyl-CoA carboxylase [Dictyostelium purpureum]
          Length = 702

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 87/250 (34%), Gaps = 28/250 (11%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      LE + + +   G  A     DK+ SK++    GV V P  +     +
Sbjct: 112 YGFLSENAKFVKELEKIGVTFIGPGSYAMHALGDKIESKRIAKEAGVSVVPGFIGEVDGI 171

Query: 119 DS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
           D      + I  P ++K   GG   G+ + + D+ + +    S       +     L+ +
Sbjct: 172 DHVIKIANDIGYPVMVKASAGGGGKGMRICRNDEDVKIGFRLSKQEAKSSFGDDRMLIEK 231

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
               G  +   ++ D    +       S     +       S+ + P     ++ + + +
Sbjct: 232 YIEHGRHIEIQILSDGDNALYFPERECSIQRRNQKVIEEAPSSFITP-----EVRERMGK 286

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---AGYSFR 286
            A      +G +     +FL D      ++LE+N +              +      + +
Sbjct: 287 EAAALANKVGYKSAGTVEFLVDSERNH-YFLEMNTR----------LQVEHPITEEITKQ 335

Query: 287 ELLLWMVEDA 296
           +L+  M+  A
Sbjct: 336 DLVEHMIRVA 345


>gi|167624819|ref|YP_001675113.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           halifaxensis HAW-EB4]
 gi|167354841|gb|ABZ77454.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           halifaxensis HAW-EB4]
          Length = 702

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +IK   GG   G+ +++ +  +   +  +           +  ++       
Sbjct: 148 ANKMGFPLLIKAAFGGGGKGMRIVESNNEVLDAIHSARREAISSFGNDKLLMERYLRQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       +             ++          PA    D +  ++   A  A +AI 
Sbjct: 208 HVEVQVFADSHGNCIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRVKMGEAAVAAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTVEFLLDT-DDSFYFMEMNTR 292


>gi|254189518|ref|ZP_04896028.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
 gi|157937196|gb|EDO92866.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei Pasteur 52237]
          Length = 484

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 163 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 222

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 223 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDTLCASATRLARQ 282

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  RG    ++LFD    + +++E+N +
Sbjct: 283 VSYRGAGTLEYLFDDARGEFYFIEMNTR 310


>gi|76818864|ref|YP_336878.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           pseudomallei 1710b]
 gi|254264403|ref|ZP_04955268.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
 gi|76583337|gb|ABA52811.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           pseudomallei 1710b]
 gi|254215405|gb|EET04790.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei 1710a]
          Length = 481

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/148 (14%), Positives = 44/148 (29%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
            +    I  P +IK   GG   GI V      +   L  +             Y++    
Sbjct: 160 HEVAARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIA 219

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
               +    L   E  +   +      +             +   +   +   A    + 
Sbjct: 220 RARHIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDTLCASATRLARQ 279

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  RG    ++LFD    + +++E+N +
Sbjct: 280 VSYRGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|299483130|gb|ADJ19315.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Machimus sp. MDT-2010]
          Length = 963

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 33/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 54  SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLQRDYVEQVIRAERPNGVLL 113

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I     + D+      ++     V    +
Sbjct: 114 TFGGQTAXNCGVELQKAGIFSKYNVKILGTPIQTIIETEDRKIFSDRIAEIGEKVAPSEA 173

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +               ++    +L   +   H +QL+I++
Sbjct: 174 VYSVQDALDAADRLGYPVMARXAAFSLGGLGSGFANNKEELTNLAHQAL-AHSNQLIIDK 232

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 233 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNREYNMLRST 291

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 292 AIKVIRHFGVIGECNIQYALNPFSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 347

Query: 291 WM 292
            +
Sbjct: 348 KL 349


>gi|282904187|ref|ZP_06312075.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
 gi|282595805|gb|EFC00769.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Staphylococcus
           aureus subsp. aureus C160]
          Length = 453

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 75/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDHIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|269214482|ref|ZP_05986663.2| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           lactamica ATCC 23970]
 gi|269209605|gb|EEZ76060.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           lactamica ATCC 23970]
          Length = 482

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 178 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 237

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                ++          PA    +  ++    A   A + IG
Sbjct: 238 HVEIQVLADEHGNAVYLAERDCSMQRRHQKVIEEAPAPFIDEEARKKIGKACADACKRIG 297

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 298 YRGAGTFEFLY--EDGEFFFIEMNTR 321


>gi|218931762|gb|ACL12519.1| CAD [Clusia lateralis]
          Length = 1274

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 366 SGSQAIKAMKEEKIQTILINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 426 TFGGQTALNCGVELEGAGVFAKYNVKILGTPIESIIETEDRKLFADRVNEIGEQVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  + + + +  P + +       LG         +    L   + ++  QL+I++
Sbjct: 486 VYSVQEALAAANRLGYPVMARAAFSLGGLGSGFANNAVEL--ATLAHQALSYSSQLVIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNILRTT 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 603 ALKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|253698912|ref|YP_003020101.1| pyruvate carboxylase [Geobacter sp. M21]
 gi|251773762|gb|ACT16343.1| pyruvate carboxylase [Geobacter sp. M21]
          Length = 1148

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 70/235 (29%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           + +D  +  +    + D      +G   E+       E   I +            DK+ 
Sbjct: 66  LGIDE-IIALAKKREVDAIHPG-YGFLAENAEFAEKCEANGIAFIGPTAEMQRALGDKVA 123

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +++V  + GV   P     I      +        P +IK   GG   G+ V    + + 
Sbjct: 124 ARKVAKAAGVTTVPGTEEPITHEEDALIFAKNHGYPIIIKAAAGGGGRGMRVATDKKELL 183

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L  +SS           +++        +    L      +         ++      
Sbjct: 184 EGLQSASSEAKAAFGDPAVFLERYLKNPKHIEVQVLGDAYGNLVHFYERDCSIQRRHQKV 243

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+   P      +   A      +G R     +FL D    K +++E+N +
Sbjct: 244 VEFAPSLALPGATRLALCTDALKIANQVGYRNAGTVEFLLDE-DGKYYFIEMNPR 297


>gi|148544212|ref|YP_001271582.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus reuteri
           DSM 20016]
 gi|184153575|ref|YP_001841916.1| biotin/pyruvate carboxylase [Lactobacillus reuteri JCM 1112]
 gi|227364643|ref|ZP_03848701.1| acetyl-CoA carboxylase [Lactobacillus reuteri MM2-3]
 gi|325682242|ref|ZP_08161759.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus reuteri
           MM4-1A]
 gi|148531246|gb|ABQ83245.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus reuteri
           DSM 20016]
 gi|183224919|dbj|BAG25436.1| biotin/pyruvate carboxylase [Lactobacillus reuteri JCM 1112]
 gi|227070314|gb|EEI08679.1| acetyl-CoA carboxylase [Lactobacillus reuteri MM2-3]
 gi|324978081|gb|EGC15031.1| acetyl-CoA carboxylase, biotin carboxylase [Lactobacillus reuteri
           MM4-1A]
          Length = 456

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/277 (14%), Positives = 80/277 (28%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHLKP--------DLAFNV------------- 57
              +L + G K   I       S+ + LA            D   N              
Sbjct: 17  IIRSLRELGIKTVAIYSTADRESLHVQLADEAVCVGTARAQDSYLNAKNILEAALGTGAQ 76

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + E   I +         L  +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAEFATMCEECGITFIGPQASVIDLMGNKEHAREQMKKSGVPVIPGSDD 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++  + I  P ++K   GG   GI  I     +     ++ +          
Sbjct: 137 YITNVNDAVEVANKIGYPILLKAAAGGGGKGIRRINDHNQMRQIFSEAQNEARLSFNDDR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-Q 228
            Y++ I      +                     ++ +        P  +  +  ++   
Sbjct: 197 MYLEKIMENVKHIEVQVFRDNFGNAVFFPERDCSIQRNKQKLIEESPCVLVNEQERKTLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A   I        +FL D      +++E+N +
Sbjct: 257 QITMRAINVINYHNTGTIEFLMD-KDHHFYFMEMNTR 292


>gi|254243588|ref|ZP_04936910.1| hypothetical protein PA2G_04411 [Pseudomonas aeruginosa 2192]
 gi|126196966|gb|EAZ61029.1| hypothetical protein PA2G_04411 [Pseudomonas aeruginosa 2192]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI +      +  +   +             Y++      
Sbjct: 150 CAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAVYLERFIRQA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +           A +     + +   A    Q++G
Sbjct: 210 RHIEVQILGDGERAVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++LFD  S + F++E+N       P         EM    G    +L+  M+ 
Sbjct: 270 YRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHP-------VSEM--VTGI---DLVQAMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|145220187|ref|YP_001130896.1| carbamoyl-phosphate synthase large subunit [Prosthecochloris
           vibrioformis DSM 265]
 gi|145206351|gb|ABP37394.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeovibrioides DSM 265]
          Length = 619

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/295 (14%), Positives = 94/295 (31%), Gaps = 32/295 (10%)

Query: 20  KACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVL 58
           +A   AL +AG++   +           D+   +            ++ H KP       
Sbjct: 118 QAVF-ALREAGYETIMVNCNPETVSTDYDIADKLYFEPLTFEDTIRIIEHEKPLGVIVSF 176

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T S  +  A    K  +     +   P   + +      
Sbjct: 177 GGQTPLKLSGRLHEAGVTILGTSSEGIDLAEDRKKFGALLDRLNIPHPDYGTAVSLEEAR 236

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D    I  P +++P        + +I  D S+   + Q+        LLI+++++     
Sbjct: 237 DITTRIGYPVLVRPSYVLGGRAMKIIYSDDSLKEYVDQALFITEKYPLLIDRFLE---TA 293

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
                DA  D T+  +     +       S +ST +LP      ++   ++    +  + 
Sbjct: 294 VEFDIDALADTTDCVISGIMQHVEAAGIHSGDSTSILPYHNISPEVIATMKEYTRIMAEN 353

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +   G+    +     +  V+ +E+N +   T     P +         ++   +
Sbjct: 354 LKVVGLMNVQYAV--QNNSVYVIEVNPRASRT----VPFVGKATAIPVVKIATRI 402


>gi|116054223|ref|YP_788667.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa UCBPP-PA14]
 gi|296386994|ref|ZP_06876493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAb1]
 gi|313111876|ref|ZP_07797667.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           39016]
 gi|115589444|gb|ABJ15459.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|310884169|gb|EFQ42763.1| putative acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           39016]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI +      +  +   +             Y++      
Sbjct: 150 CAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAVYLERFIRQA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +           A +     + +   A    Q++G
Sbjct: 210 RHIEVQILGDGERAVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++LFD  S + F++E+N       P         EM    G    +L+  M+ 
Sbjct: 270 YRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHP-------VSEM--VTGI---DLVQAMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|307721669|ref|YP_003892809.1| RimK domain-containing protein ATP-grasp [Sulfurimonas autotrophica
           DSM 16294]
 gi|306979762|gb|ADN09797.1| RimK domain protein ATP-grasp [Sulfurimonas autotrophica DSM 16294]
          Length = 304

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/252 (17%), Positives = 80/252 (31%), Gaps = 22/252 (8%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K DL F+   G      +         IP  ++   + AL+ DK  +  V+ + G+    
Sbjct: 64  KLDLFFSYNAGEQTLYQMYLYQALNRIIPMINTYD-SFALTEDKFHTSFVLRNNGIKTAD 122

Query: 110 SILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             L +R        I       V KP  G   +G+  I+      LD+L         + 
Sbjct: 123 YKLCHRDDGHELKKIIKKWDKMVYKPTDGWGGVGLTKIES--EANLDMLMPFLNQMDLRY 180

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
                   +E                    + +           +     +    +   E
Sbjct: 181 FY------VEKFINYDNTDFRVDIVDGKFVACYGRKASGTDWRTNVTSGGSVFIREANDE 234

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           V  +A  A +A G   I   D ++D  + +   LE+N  P        PE     G +F 
Sbjct: 235 VVNIAKKACKATGV-DIGGVDIIYDRDTEEYIVLEVNGIPAFAT----PEQ-EKMGLNFN 288

Query: 287 ----ELLLWMVE 294
               +L++ +++
Sbjct: 289 NKKIDLIVDLID 300


>gi|307295123|ref|ZP_07574965.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobium
           chlorophenolicum L-1]
 gi|306879597|gb|EFN10815.1| acetyl-CoA carboxylase, biotin carboxylase [Sphingobium
           chlorophenolicum L-1]
          Length = 450

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  +  +   + Q+ S           Y++       
Sbjct: 149 AAKIGYPVLIKAASGGGGRGMKVVPSEDLLETSMKQAGSEAKAAFGDDTVYMEKYLGNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     L+          P+ +        +  +   A   +G
Sbjct: 209 HIEFQVFGDGNGNAIHLGERDCSLQRRHQKVLEEAPSPVLSAAERDRMGEVVRKAMADMG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + +++E+N +
Sbjct: 269 YRGAGTIEFLW--EDGEFYFIEMNTR 292


>gi|218889234|ref|YP_002438098.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa LESB58]
 gi|218769457|emb|CAW25217.1| probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa
           LESB58]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI +      +  +   +             Y++      
Sbjct: 150 CAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAVYLERFIRQA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +           A +     + +   A    Q++G
Sbjct: 210 RHIEVQILGDGERAVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++LFD  S + F++E+N       P         EM    G    +L+  M+ 
Sbjct: 270 YRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHP-------VSEM--VTGI---DLVQAMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|149211275|ref|XP_001523012.1| hypothetical protein MG10320.4 [Magnaporthe oryzae 70-15]
          Length = 722

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 19/85 (22%)

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           ++ +++   A  A  A+G  G    +F+ D  + + +++E+N +              + 
Sbjct: 265 ELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNTR----------LQVEHP 314

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +L+ W +  A+  R
Sbjct: 315 VSEMVTG---TDLVEWQLRVAAGER 336


>gi|150403045|ref|YP_001330339.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C7]
 gi|171472895|sp|A6VIB2|PURT_METM7 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|150034075|gb|ABR66188.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           maripaludis C7]
          Length = 388

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 74/248 (29%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDR--SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  V+   KPDL    +     +            +P  ++  L   
Sbjct: 52  HRFHVIDMKDGGALRAVIEREKPDLIVPEIEAINTDTLKELETEGYHVVPTANATKLTMD 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + + +                  ++   I  P VIKP+   S  G   IK ++
Sbjct: 112 REGIRRLAFEKLGLRT-AKYEFAESLEELKEAVQRIGIPCVIKPIMSSSGKGQSTIKSER 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + S   G          G ++          ++T +    S+   +      
Sbjct: 171 DIEKSWDYAKSAARG---------IGTKVIVEEFIKFDYEITLLTARTSEGTKFCEPIGH 221

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     L  +V + E++
Sbjct: 222 IQIDGDYHESWQPHPMCAPTKAKAQEMAKKITDELGGYGIFGVELFV--LDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|78044886|ref|YP_360817.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
 gi|77997001|gb|ABB15900.1| acetyl-CoA carboxylase, biotin carboxylase [Carboxydothermus
           hydrogenoformans Z-2901]
          Length = 449

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ + + D  +    + + +         + Y++       
Sbjct: 148 AREIGYPVMLKASAGGGGKGMRIAQNDDDLAKAFITARTEAQNAFGNPDVYLEKYVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                ++          P+     I +E    A   A +A+ 
Sbjct: 208 HIEIQVLGDKHGNYVYLFERDCSIQRRHQKLIEEAPSPFVDPILREKMGEAALKACRAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      +++E+N +
Sbjct: 268 YYSAGTVEFLVDRNKN-FYFMEMNTR 292


>gi|86197052|gb|EAQ71690.1| hypothetical protein MGCH7_ch7g1097 [Magnaporthe oryzae 70-15]
          Length = 729

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 19/85 (22%)

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           ++ +++   A  A  A+G  G    +F+ D  + + +++E+N +              + 
Sbjct: 272 ELRQDLWAKARTAALAVGYVGAGTVEFILDRDTDRFYFMEMNTR----------LQVEHP 321

Query: 281 -----AGYSFRELLLWMVEDASCLR 300
                 G    +L+ W +  A+  R
Sbjct: 322 VSEMVTG---TDLVEWQLRVAAGER 343


>gi|15595691|ref|NP_249185.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PAO1]
 gi|107099480|ref|ZP_01363398.1| hypothetical protein PaerPA_01000492 [Pseudomonas aeruginosa PACS2]
 gi|254237281|ref|ZP_04930604.1| hypothetical protein PACG_03345 [Pseudomonas aeruginosa C3719]
 gi|9946357|gb|AAG03883.1|AE004486_12 probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PAO1]
 gi|126169212|gb|EAZ54723.1| hypothetical protein PACG_03345 [Pseudomonas aeruginosa C3719]
          Length = 458

 Score = 46.4 bits (108), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI +      +  +   +             Y++      
Sbjct: 150 CAEEVGYPLLVKASAGGGGRGIRIAHDADELRREFPIAQREAQAAFGSPAVYLERFIRQA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E AV   +      +           A +     + +   A    Q++G
Sbjct: 210 RHIEVQILGDGERAVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++LFD  S + F++E+N       P         EM    G    +L+  M+ 
Sbjct: 270 YRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHP-------VSEM--VTGI---DLVQAMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|297700660|ref|XP_002827360.1| PREDICTED: LOW QUALITY PROTEIN: acetyl-CoA carboxylase 1-like,
           partial [Pongo abelii]
          Length = 1865

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 187 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 246

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 247 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 303

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 304 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 361

Query: 264 VQ 265
            +
Sbjct: 362 PR 363


>gi|254933997|gb|ACT87607.1| carbamoylphosphate synthetase [Gauna aegusalis]
          Length = 976

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAIQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + + S    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKVFEKYNVNVLGTPIQSIVDTEDRKIFAEQIHSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEAVAAALQIGYPVMARSAFSLGGLGSGFANNEEELRT--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|221133545|ref|ZP_03559850.1| acetyl-CoA carboxylase [Glaciecola sp. HTCC2999]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ V++ +  +   +  + S     +N+    + +   +  
Sbjct: 149 AKRIGYPIIVKAAGGGGGRGMRVVRSEAELNEAIAMTKSEAGAAFNNDVVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D       +            K         +  ++   I +  ++      
Sbjct: 209 HVEIQVLADGQGGAIHLGERDCSMQRRHQKVVEEAPAPGVSDQMREKIGERCRKACIE-- 266

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FL+   + + +++E+N +
Sbjct: 267 --IGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|332847945|ref|XP_511428.3| PREDICTED: acetyl-CoA carboxylase 1 [Pan troglodytes]
          Length = 2383

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 302 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 361

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 362 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 418

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 419 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 476

Query: 264 VQ 265
            +
Sbjct: 477 PR 478


>gi|317177835|dbj|BAJ55624.1| biotin carboxylase [Helicobacter pylori F16]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/263 (16%), Positives = 86/263 (32%), Gaps = 25/263 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDASCLR 300
              +G +   L+ WM++ A   +
Sbjct: 313 EMVSGLN---LIEWMIKIAQGEK 332


>gi|311696825|gb|ADP99698.1| acetyl-CoA carboxylase biotin carboxylase subunit [marine bacterium
           HP15]
          Length = 473

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K   GG   GI     ++ +  +  +  S         E +++   +  
Sbjct: 147 QAADIGYPVMLKATSGGGGRGIRRCDNEKELRQNFERVISEATKAFGSAEVFLEKCIIEP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L  T   V         ++  +     + P+    +   + +  LA    +  
Sbjct: 207 RHIEVQILADTHGNVVHLYERDCSIQRRNQKLIELAPSPQLEESQREYIGDLAKRVAKQC 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D      +++E+N +
Sbjct: 267 GYVNAGTVEFLLD-HDGSFYFMEMNTR 292


>gi|254934051|gb|ACT87634.1| carbamoylphosphate synthetase [Psychostrophia melanargia]
          Length = 976

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + V++    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVTVLGTPIQSIVDTEDRKIFAEKVNAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSIEEALAAAIQIGYPVMARSAFSLGGLGSGFANNEEELKS--LAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|312889964|ref|ZP_07749508.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
 gi|311297496|gb|EFQ74621.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
          Length = 457

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/150 (16%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P ++K   GG   G+ V+ +D         + +     + +    L +  VD  
Sbjct: 158 ANKVGYPVILKATAGGGGRGMRVVWQDSEFEAAWDSARAESGAAFGNDGLYLEKYVVDPR 217

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD    V  ++           +             +   + K++   A    
Sbjct: 218 HIEIQVVGDQYGKVCHLSERDCSIQ----RRHQKLVEESPSPFMTEKLRKKMGEAAIKGA 273

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D   R  +++E+N +
Sbjct: 274 KAVRYEGAGTVEFLVD-KDRNFYFMEMNTR 302


>gi|218526174|gb|ACK86494.1| carbamoyl-phosphate synthase [Ululodes quadripunctatus]
          Length = 719

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +          + I +   + D+     K       V    +
Sbjct: 188 TFGGQTALNCGVELEKANVFARYGCKILGTPIQSIIETEDRKMFAEKINEIDEKVAPSAA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG      ++ +    L + +  H +QL+I++
Sbjct: 248 VYSVEEALEAAKKIGYPVMTRAAFSLGGLGSGFAHNEEQLRS--LATQALAHSNQLVIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTA 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AIKVIRHFKVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|126303078|ref|XP_001371124.1| PREDICTED: similar to carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase [Monodelphis domestica]
          Length = 2220

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 412 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 471

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 472 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 531

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 532 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASSREELSSLVAPAFAHT----SQVLV 587

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 588 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 647

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 648 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 705

Query: 282 ---GYSFREL 288
              G S  +L
Sbjct: 706 LALGISLPDL 715



 Score = 37.5 bits (85), Expect = 2.7,   Method: Composition-based stats.
 Identities = 39/297 (13%), Positives = 87/297 (29%), Gaps = 31/297 (10%)

Query: 19   GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
               C   L   G+K   ++ +                       V  +     P+     
Sbjct: 952  AVGCIRQLRKMGYKTIMVNYNPETVSTDYDMCDRLYFDEISFEVVMDIYELENPEGVILS 1011

Query: 58   LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
            + G    +  +    +   +  T    + SA +  K            P    +      
Sbjct: 1012 MGGQLPNNMAMALHRQQCRVLGTSPEAIDSAENRFKFSRLLDTIGISQPQWRELSDLESA 1071

Query: 118  MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIE 176
                H +  P V++P    S   + V   D  +   L  +++ +    ++I ++  +  E
Sbjct: 1072 RQFCHTVGYPCVVRPSYVLSGAAMNVAYTDGDLERFLSSAAAVSKEHPVVISKFIQEAKE 1131

Query: 177  LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
            +        + D   +AV  S+       +S   +    P  I     + ++ +     Q
Sbjct: 1132 IDVDA---VACDGMVVAVAISEHVENAGVHSGDATLVTPPQDITPKTLERIKAIVHAVGQ 1188

Query: 237  AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             +   G      +      ++  +E NV+      S FP ++   G     L   ++
Sbjct: 1189 ELQVTGPFNLQLI--AKDDQLKVIECNVR---VSRS-FPFVSKTLGVDLVALATRII 1239


>gi|332664347|ref|YP_004447135.1| D-alanine--D-alanine ligase domain-containing protein
           [Haliscomenobacter hydrossis DSM 1100]
 gi|332333161|gb|AEE50262.1| D-alanine--D-alanine ligase domain protein [Haliscomenobacter
           hydrossis DSM 1100]
          Length = 1212

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/282 (15%), Positives = 87/282 (30%), Gaps = 39/282 (13%)

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
            D AF  L G  GEDG +Q  LE+ +IPY  SG   S ++++K+++  V    G      
Sbjct: 579 IDQAFIALQGRPGEDGQLQHELEVRKIPYNGSGPKTSQIAVNKVQTLDVWRRNGFIGPNQ 638

Query: 111 I---------LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
           +                  +  +S P+V KP+     + + +I+    +   L      +
Sbjct: 639 LLVSKRAFELSAEEAYQKIESRLSYPFVAKPIDQNGGIAVKIIRNRTDLDAYLRMMFRPH 698

Query: 162 HGDQLLIEQYVDGIELTCGV-----------------MGDASLDVTEIAVPKSDFYSYE- 203
             D     + +     +                               +        Y+ 
Sbjct: 699 GADGAEYRKILKLKPKSEFPFAEEALLESMIGPDGARHFLEISATIMASPTVEGSLKYQI 758

Query: 204 ---LKYSSLNSTHVLP------AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
               +        V+P       +    +  +++     A + +   G++  D       
Sbjct: 759 FDLAECIPGQVHPVIPARFSKNPQEQHFLSSQIKADFEKAARILNIFGLATIDGFVRIYE 818

Query: 255 R---KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
               +V  LE N  P +       + +   G +   LL  ++
Sbjct: 819 NTNPEVILLEANTLPPLHYGRGVMQQSGLMGVTPFALLDQVL 860


>gi|330884113|gb|EGH18262.1| urea amidolyase-like protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 84

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 2   RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 50

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 51  MVQLAAGD 58


>gi|330883375|gb|EGH17524.1| urea amidolyase-like protein [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 194

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 68  RAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 116

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 117 MVQLAAGD 124


>gi|306828954|ref|ZP_07462146.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           ATCC 6249]
 gi|322374858|ref|ZP_08049372.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C300]
 gi|304429132|gb|EFM32220.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus mitis
           ATCC 6249]
 gi|321280358|gb|EFX57397.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Streptococcus
           sp. C300]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/221 (15%), Positives = 75/221 (33%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + + + I +            DK+ +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCDEVGIKFIGPSGAVMDTMGDKINAREQMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +      +     I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTAEEALAVAEKIGYPVMLKASAGGGGKGIRKVEKAEDLVAAFETASSEAKANFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L         +   ++ D    V  +            K    + +  +   +  +I 
Sbjct: 197 MYLERVIYPARHIEVQILADQEGHVVHLGERDCSLQRNNQKVLEESPSIAIGKTLRNEIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A  A +++G       +FL D  S   +++E+N +
Sbjct: 257 A----AAVRAAESVGYENAGTIEFLLDEASGNFYFMEMNTR 293


>gi|38679960|ref|NP_942131.1| acetyl-CoA carboxylase 1 isoform 1 [Homo sapiens]
 gi|187951649|gb|AAI37288.1| Acetyl-Coenzyme A carboxylase alpha [Homo sapiens]
          Length = 2383

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 302 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 361

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 362 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 418

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 419 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 476

Query: 264 VQ 265
            +
Sbjct: 477 PR 478


>gi|298370002|ref|ZP_06981318.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sp.
           oral taxon 014 str. F0314]
 gi|298281462|gb|EFI22951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sp.
           oral taxon 014 str. F0314]
          Length = 456

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/215 (14%), Positives = 74/215 (34%), Gaps = 12/215 (5%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         L  DK+ +K  +   GVP  P         
Sbjct: 82  YGFLAENANFAEQVEQSGFTFIGPRAETIRLMGDKVSAKHAMIEAGVPCVPGSDGALPDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQ 170
               + +   +  P +IK   GG   G+ V+++ + +   +  + +      G+ ++  +
Sbjct: 142 PAEILKTADKVGYPVIIKASGGGGGRGMRVVERKEDLIKSVEMTKTEAGAAFGNPMVYME 201

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
                     +   A       A+  ++      +             I  +  +++ + 
Sbjct: 202 RYLQRPRHVEIQVLADEHG--NAIYLAERDCSLQRRHQKVIEEAPAPFITAEQREKIGQA 259

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A + IG RG    +FL+     + F++E+N +
Sbjct: 260 CADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|255066138|ref|ZP_05317993.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sicca
           ATCC 29256]
 gi|255049683|gb|EET45147.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria sicca
           ATCC 29256]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/213 (16%), Positives = 70/213 (32%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   E+      +E     +         L  DK+ +K  +   GVP  P         
Sbjct: 82  YGFLAENANFAEQVEQSGFIFIGPKAETIRLMGDKVSAKHAMIEAGVPCVPGSDGALSDD 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               + +   +  P +IK   GG   G+ V++K + +   +  + +           Y++
Sbjct: 142 PAEILKTADKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNPMVYME 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF- 232
                   +    L                ++          PA    +  +E    A  
Sbjct: 202 RYLQRPRHVEIQVLADEHGNAIYLAERDCSMQRRHQKVIEEAPAPFIDEKAREKIGKACT 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A + IG RG    +FL+   + + F++E+N +
Sbjct: 262 DACKRIGYRGAGTFEFLY--ENGEFFFIEMNTR 292


>gi|77919553|ref|YP_357368.1| pyruvate carboxylase [Pelobacter carbinolicus DSM 2380]
 gi|77545636|gb|ABA89198.1| pyruvate carboxylase [Pelobacter carbinolicus DSM 2380]
          Length = 1148

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 44/147 (29%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ + +  Q +   L  +SS           +++      
Sbjct: 152 FAAKCGYPIMIKAAAGGGGRGMRIARNRQELAEGLRSASSEAKAAFGNPSVFLEKYLENP 211

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    +      V         ++        + P+        +E+   A      +
Sbjct: 212 KHVEVQIMGDKYGNVVHFYDRDCSIQRRHQKVIEIAPSPNLSAAKRQELCDYALRIANHV 271

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D      +++E+N +
Sbjct: 272 GYVNAGTVEFLMDA-DGNFYFIEVNTR 297


>gi|332969172|gb|EGK08204.1| acetyl-CoA carboxylase, biotin carboxylase [Kingella kingae ATCC
           23330]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 15/220 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         L  DK+ +K  + + GVP  P    
Sbjct: 77  AIHPGYGFLAENANFAEQVEKSGFIFIGPKADTIRLMGDKVSAKHAMIAAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQ 165
                    +     +  P +IK   GG   G+ V++K + +   +  + +      G+ 
Sbjct: 137 ALPDNPDEILKIADKVGFPVIIKASGGGGGRGMRVVEKKEDLLKSVEMTKAEAEAAFGNP 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           ++  +          +   A               S + ++  +      P   P +  +
Sbjct: 197 MVYMERFLQRPRHVEIQVLADEH-GNAIYLGERDCSMQRRHQKIIEEAPAPFITPTE-RE 254

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++      A + IG RG    +FL+     + F++E+N +
Sbjct: 255 KIGTACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|241759155|ref|ZP_04757263.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           flavescens SK114]
 gi|241320574|gb|EER56851.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Neisseria
           flavescens SK114]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                ++          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEYGNAIYLAERDCSMQRRHQKVIEEAPAPFITEEERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|159486553|ref|XP_001701303.1| hypothetical protein CHLREDRAFT_122441 [Chlamydomonas reinhardtii]
 gi|158271786|gb|EDO97598.1| predicted protein [Chlamydomonas reinhardtii]
          Length = 297

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 51/141 (36%), Gaps = 4/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGD 184
            P ++K   GG   GI  +  D+ +     Q +    G  L   +       L   ++ D
Sbjct: 3   YPVMLKASWGGGGKGIRKVSSDEEVRSVFKQVAGEVPGSPLFAMKLAPQSRHLEVQLLAD 62

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
             +     +                +S        P  + ++++R A    + +G  G +
Sbjct: 63  MHVSARACSC---MQPPCPSHEPLPSSPSSPLPPSPQHVLRDMERCARALARLVGYVGAA 119

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+    ++ ++LE+N +
Sbjct: 120 TVEYLYLLEEQRYYFLELNPR 140


>gi|118594642|ref|ZP_01551989.1| phosphoribosylglycinamide formyltransferase 2 [Methylophilales
           bacterium HTCC2181]
 gi|118440420|gb|EAV47047.1| phosphoribosylglycinamide formyltransferase 2 [Methylophilales
           bacterium HTCC2181]
          Length = 399

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/281 (11%), Positives = 79/281 (28%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK    +L+  G +V  +D                +D      +  ++   +P      +
Sbjct: 23  GKEVIISLQKLGVEVVAVDRYANAPGHQVAHRSHVIDMTDAGKLKAIIQLEQPHYIIPEI 82

Query: 59  HGNFGEDGLVQAIL-ELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                            + IP   +  L       +  + + +S        +  ++   
Sbjct: 83  EAINTAVLEEIENAGSAIIIPSVKAVQLTMDREGIRKLASESLSLPTSSYGFARSLDELR 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 +  P  IKP    S  G   I  +Q I      ++S       ++I + +   +
Sbjct: 143 EIILSKVGFPCFIKPTMSSSGKGQSKIYSEQEIAKAWDYAASGGRVDQGVVIAEGMVDFD 202

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + +     +          + +        P  +      + + +A     
Sbjct: 203 YEITLLTVRAKNSQGFIITHYCEPIGHKQENGDYVESWQPQPMSEKALLKSKEMAKKVTD 262

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           A+G  GI   +         V++ E + +P      +   M
Sbjct: 263 ALGGLGIFGVELFI--KGDDVWFSEASPRP--HDTGMVTMM 299


>gi|293607856|ref|ZP_06690167.1| acetyl-CoA carboxylase subunit A [Achromobacter piechaudii ATCC
           43553]
 gi|292813745|gb|EFF72915.1| acetyl-CoA carboxylase subunit A [Achromobacter piechaudii ATCC
           43553]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 50/152 (32%), Gaps = 3/152 (1%)

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           +  +     +  P +IK   GG   G+ V+  + ++   +  + S         E Y++ 
Sbjct: 143 QEIIRIAREVGYPVIIKAAGGGGGRGMRVVYTEAALLNAVTMTRSEAGAAFNNPEVYMEK 202

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
                  +    L                ++          P   I     + +      
Sbjct: 203 FLENPRHVEIQVLADGGRNAVWLGERDCSMQRRHQKVIEEAPAPGIARRAIERIGDRCAD 262

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A + +G RG    +FLF   + + +++E+N +
Sbjct: 263 ACRKMGYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|224826230|ref|ZP_03699332.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
 gi|224601331|gb|EEG07512.1| acetyl-CoA carboxylase, biotin carboxylase [Lutiella nitroferrum
           2002]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 48/147 (32%), Gaps = 3/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ V+  + ++   +  + +           Y++      
Sbjct: 148 MAKKIGFPVIIKASGGGGGRGMRVVHTEAALINSVNMTRTEAAAAFGNPTVYMEKFLEQP 207

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAI 238
             +    L                ++          PA    D  ++    A   A + I
Sbjct: 208 RHIEIQVLSDEYGNAIYLGERDCSMQRRHQKIIEEAPAPGITDAQRKKIGEACADACRRI 267

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
             RG    +FL+   + + +++E+N +
Sbjct: 268 SYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|38679974|ref|NP_942135.1| acetyl-CoA carboxylase 1 isoform 4 [Homo sapiens]
 gi|119577980|gb|EAW57576.1| hCG30204, isoform CRA_a [Homo sapiens]
 gi|119577983|gb|EAW57579.1| hCG30204, isoform CRA_a [Homo sapiens]
 gi|119577987|gb|EAW57583.1| hCG30204, isoform CRA_a [Homo sapiens]
          Length = 2268

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 187 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 246

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 247 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 303

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 304 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 361

Query: 264 VQ 265
            +
Sbjct: 362 PR 363


>gi|50293649|ref|XP_449236.1| hypothetical protein [Candida glabrata CBS 138]
 gi|49528549|emb|CAG62210.1| unnamed protein product [Candida glabrata]
          Length = 2233

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 53/162 (32%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            ++    I  P +IK  +GG   GI  + +++       Q+++   G 
Sbjct: 226 IYQKGCCSSPEDGLEKAKKIGFPVMIKASEGGGGKGIRQVTREEDFINLYHQAANEIPGS 285

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +       L   ++ D       +            +                + 
Sbjct: 286 PIFIMKLAGKARHLEVQLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIAGPET 341

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 342 FGEMEKAAVRLGKLVGYVSAGTVEYLYSHDDNKFYFLELNPR 383


>gi|30249750|ref|NP_841820.1| hypothetical protein NE1792 [Nitrosomonas europaea ATCC 19718]
 gi|30180787|emb|CAD85703.1| hypothetical protein NE1792 [Nitrosomonas europaea ATCC 19718]
          Length = 357

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 86/250 (34%), Gaps = 27/250 (10%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +   +     D+      G+       +     L   +  S  +      +K    Q  +
Sbjct: 66  LRERVQGENFDIILPSDMGSAAFLAATKKAYPDLPC-FPCSDQVILDTLHNKWSFAQTCA 124

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
              +P+ P+IL+          +     P ++KPL+  SS G++ +   Q++   + Q S
Sbjct: 125 KYRLPIPPTILLTSSDQLDTSTLDPVGFPLIVKPLEAESSHGVVRLDNLQALRTYIEQDS 184

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +     L+++ Y+ G ++   ++      +        +                    
Sbjct: 185 HYAQ-LPLIVQSYIPGRDIDISILAANDRILCNTVQSWLEDGV----------------- 226

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMA 278
           +    + E+  +A    QA    G++  D   D    K++ +E N +   T +S    M 
Sbjct: 227 LEFTQHPEMHAIATRLVQAFHYEGLAHFDMRIDARDGKLYVIECNPRAWYT-IS--ASMW 283

Query: 279 AYAGYSFREL 288
              G +F E+
Sbjct: 284 Q--GLNFIEM 291


>gi|326382160|ref|ZP_08203852.1| carbamoyl phosphate synthase large subunit [Gordonia neofelifaecis
           NRRL B-59395]
 gi|326198890|gb|EGD56072.1| carbamoyl phosphate synthase large subunit [Gordonia neofelifaecis
           NRRL B-59395]
          Length = 1116

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 86/307 (28%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKP----------------- 51
           SG      L+  G +VS +         D + +    +  + P                 
Sbjct: 29  SGTQACRVLKAEGLRVSLVNSNPATIMTDPEFADATYVEPITPQYIEKVIQTEAAAGHPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  V       L   +I    +   A     D+   K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAVGLHDQGILAKYDIELIGADFDAIQRGEDRQMFKDIVTKVGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +           +  P V++P      LG  +   +  +        + +    
Sbjct: 149 ARSRVCHTMDEVHATVAELGYPVVVRPSFTMGGLGSGMAYDEADLDRIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   + D   +     +     +      +          +   
Sbjct: 209 VLIEESILGWKEFELELMRDNKDNVVVICSIENVDPVGVHTGDSITVAPAMTLTDREYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  DP   ++  +E+N  P ++  S     +   GY  
Sbjct: 269 MRDLSIAILREVGVDTGGCNIQFAQDPRDGRLVVIEMN--PRVSRSS--ALASKATGYPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKMAAKL 331



 Score = 41.8 bits (96), Expect = 0.13,   Method: Composition-based stats.
 Identities = 43/304 (14%), Positives = 97/304 (31%), Gaps = 42/304 (13%)

Query: 22  CASAL--EDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNVLH----------- 59
             +AL   +AG++   +         D D +  L    L  +    V H           
Sbjct: 598 VHAALTLSEAGYETVMVNCNPETVSTDYDTADRLYFEPLTFEDVLEVYHAESESGTVAGV 657

Query: 60  -----GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN 114
                G        +     + I  T    +  A    +     V +    P   +    
Sbjct: 658 IVQLGGQTPLGLAARLEAAGVPIVGTSPAAIDLAEDRGEFGEVLVKADLPAPQFGTATTF 717

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
               D    I  P +++P       G+ ++  +Q +   +  ++  +    +L++++++G
Sbjct: 718 EGARDIASSIGYPVLVRPSYVLGGRGMQIVYDEQGLADYIANATEISDDRPVLVDRFLEG 777

Query: 175 -IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
            +E+    + D         +   +           ++  + P  +  D+ + V+     
Sbjct: 778 AVEIDVDALCDGDEVYIGGIMEHIEEAGIHSG---DSACALPPITLGPDVIERVRVSTTA 834

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPGMTPVSIFPEMAAYA----GYS 284
             + +G RG+    +     +  ++ LE N       P ++  +  P   A A    G S
Sbjct: 835 LAKGLGVRGLMNVQYAL--ANDVLYVLEANPRASRTVPFVSKATSVPLAKACARVMLGMS 892

Query: 285 FREL 288
             EL
Sbjct: 893 IAEL 896


>gi|317401287|gb|EFV81927.1| phosphoribosylglycinamide formyltransferase 2 [Achromobacter
           xylosoxidans C54]
          Length = 405

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 31/284 (10%), Positives = 70/284 (24%), Gaps = 26/284 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                       ++  V+   +P +    +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDPEALEKVIRQEQPHVIVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF-T 117
                   +      +  +  T      +       R               +       
Sbjct: 89  EAIATNLLVQLESAGVARVTPTARAAQLTMNREGIRRLAAETLGLPTSPYAFVDTEDELR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P VIKP+   S  G  +IK  + +      +      G    I +     +
Sbjct: 149 QAIDGGIGYPCVIKPVMSSSGKGQSLIKAPEEVASAWRYAQEGGRVGGGRAIVEGFIRFD 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +         +        +          P  +        + +A     
Sbjct: 209 YEITLLTVRARGADGQVETRYCEPIGHKQVDGDYVESWQPHPMSPAALARAREIASAVTA 268

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
            +G  GI   +        +V++ E++ +P      +   +   
Sbjct: 269 ELGGLGIFGVELFV--AGDQVWFSEVSPRP--HDTGMVTMITQA 308


>gi|119719037|ref|YP_919532.1| carbamoyl-phosphate synthase L chain, ATP-binding [Thermofilum
           pendens Hrk 5]
 gi|119524157|gb|ABL77529.1| pyruvate carboxylase subunit A [Thermofilum pendens Hrk 5]
          Length = 492

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/230 (16%), Positives = 77/230 (33%), Gaps = 5/230 (2%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   ++     ++    + +         L  DK+ +++ 
Sbjct: 66  ERIVKIAVSAGADAVHPG-YGFLSQNPSFARMVIEEGLIWVGPKPETMKLVGDKLGARKF 124

Query: 100 VSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            SS G+PV P                 I  P ++KP  GG  +G+ V    + +  +L +
Sbjct: 125 FSSKGIPVVPGAFEAVDFNSALSIAEEIGFPVIVKPAGGGGGIGMFVAHTPEDLEKNLEK 184

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +           E YV+        +    L      V         ++          P
Sbjct: 185 ARQLAGSAFARTEVYVEKYFPRAKHIEVQILGDKRGRVVHLFERECSVQRRYQKVVEEAP 244

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +     +  +++   A  A +A G       +FLFD  SR  ++LE+N +
Sbjct: 245 SPSLTQEEREKLLSAAVKAAEACGYENAGTFEFLFDVESRNFYFLEVNSR 294


>gi|332258742|ref|XP_003278454.1| PREDICTED: acetyl-CoA carboxylase 1 [Nomascus leucogenys]
          Length = 2358

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 302 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 361

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 362 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 418

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 419 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 476

Query: 264 VQ 265
            +
Sbjct: 477 PR 478


>gi|303244496|ref|ZP_07330831.1| acetyl-CoA carboxylase, biotin carboxylase [Methanothermococcus
           okinawensis IH1]
 gi|302485194|gb|EFL48123.1| acetyl-CoA carboxylase, biotin carboxylase [Methanothermococcus
           okinawensis IH1]
          Length = 507

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG  +G+ V    Q +   +  + S           +++       
Sbjct: 148 AEEIGYPVIIKASAGGGGMGMGVAYNKQELIETIESTKSIAQSAFGDSTVFIEKYLEKPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L      V         ++          P   +  ++  ++   A  A +AI 
Sbjct: 208 HIEIQILADKYGNVVHLGDRECSIQRRHQKLIEEAPAPIMTEELRVKMGEAAVKAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL++  + + ++LE+N +
Sbjct: 268 YHSAGTVEFLYN--NGEFYFLEMNTR 291


>gi|260205816|ref|ZP_05773307.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
 gi|289575206|ref|ZP_06455433.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
 gi|289539637|gb|EFD44215.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis K85]
          Length = 654

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IKP  GG   G+ +++    +P  L+ +             +++   L   
Sbjct: 148 AAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDTLFLERFVLRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +      + +   A    + + 
Sbjct: 208 HIEVQVLADAHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPQTRERIGVAACNTARCVD 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 268 YVGAGTVEFIVSAQRPDEFFFMEMNTR 294


>gi|258424032|ref|ZP_05686914.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus A9635]
 gi|257845653|gb|EEV69685.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus A9635]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDHIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E      I+E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQIVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSND 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL        +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 288


>gi|227504412|ref|ZP_03934461.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           striatum ATCC 6940]
 gi|227199060|gb|EEI79108.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           striatum ATCC 6940]
          Length = 1113

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 94/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQID-------------------------VDRSVGLVLAH-LKP 51
           SG      L++ G +V+ ++                         +++ +   L    K 
Sbjct: 29  SGTQACRILKEEGLRVTLVNSNPATIMTDPEFADHTYVEPIDPVFIEKIIVKELEEGHKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +         IL+   I    + I A     D+ + K +V+S G   
Sbjct: 89  DAVLATLGGQTALNAAVQLDRAGILDKYGIELIGADIDAIERGEDRQKFKDIVASIGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSRVCHNMDEVHETVAELGLPVVVRPSFTMGGLGSGLAYNQEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +  K
Sbjct: 209 VLIEESILGWKEFELELMRDGDDNVVVIASIENVDALGVHTGDSVTVAPALTLTDREYQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  +P+  ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDLGIAIIREVGVDTGGCNIQFAVNPVDGRIIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331


>gi|215431447|ref|ZP_03429366.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
 gi|289754610|ref|ZP_06513988.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
 gi|289695197|gb|EFD62626.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis EAS054]
          Length = 654

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IKP  GG   G+ +++    +P  L+ +             +++   L   
Sbjct: 148 AAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDTLFLERFVLRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +      + +   A    + + 
Sbjct: 208 HIEVQVLADAHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPQTRERIGVAACNTARCVD 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 268 YVGAGTVEFIVSAQRPDEFFFMEMNTR 294


>gi|205352411|ref|YP_002226212.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|205272192|emb|CAR37050.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 287/91]
 gi|326627463|gb|EGE33806.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Gallinarum str. 9]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEDEGLNVVPCARTTQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|220906900|ref|YP_002482211.1| acetyl-CoA carboxylase biotin carboxylase subunit [Cyanothece sp.
           PCC 7425]
 gi|219863511|gb|ACL43850.1| acetyl-CoA carboxylase, biotin carboxylase [Cyanothece sp. PCC
           7425]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/217 (15%), Positives = 74/217 (34%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     I    +I +      A     DK  +K  +   GVP  P    
Sbjct: 78  AIHPGYGFLAENARFAEICADHQIVFIGPTPAAIRAMGDKSTAKATMQQAGVPTIPGSDG 137

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            ++  +      + I  P +IK   GG   G+ ++++ + +    L +            
Sbjct: 138 LVMDEQLAQTIANQIGYPLMIKATAGGGGRGMRLVREAEELSRLFLAAQGEAEAAFGNPG 197

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L  +   V         ++          P+      + +++ 
Sbjct: 198 LYLEKFIDQPRHIEFQILADSYGNVIHLGERDCSIQRRHQKLLEEAPSPALTSQLREKMG 257

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A +A ++I   G    +FL D      +++E+N +
Sbjct: 258 QAAVMAAKSINYVGAGTVEFLLDSA-GHFYFMEMNTR 293


>gi|164420137|gb|ABY55008.1| carbamoylphosphate synthetase [Pterostichus stygicus]
          Length = 683

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 127 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 187 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 247 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 364 AINVIRHFGVVGECNIQYAVNPYTEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|194245508|gb|ACF35363.1| carbamoylphosphate synthetase [Tribolium castaneum]
          Length = 882

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 84/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 96  SGSQAIKALREENIQTVLINPNIATVQTSKGLADKVYFLPLVPDYVEQVIRVERPGGVLL 155

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     I +   I    + I A   + D+    + +      V    +
Sbjct: 156 TFGGQTGLNCGVELQKAGIFDKYNIQILGTPIQAIIDTEDRKIFTERIAAIGEKVAPSMA 215

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P + +       LG         +    L   +  H  QL+I++
Sbjct: 216 AHSVEEALEAAEQLGYPVMARAAFSLGGLGSGFANSKDELKT--LAVQALAHSSQLIIDK 273

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 274 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 332

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 333 AIKVIRHFGVIGECNIQYAVNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 388

Query: 291 WM 292
            +
Sbjct: 389 KL 390


>gi|194245498|gb|ACF35358.1| carbamoylphosphate synthetase [Pterostichus melanarius]
          Length = 671

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 131 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 191 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AINVIRHFGVVGECNIQYAVNPYTEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|169599981|ref|XP_001793413.1| hypothetical protein SNOG_02819 [Phaeosphaeria nodorum SN15]
 gi|160705357|gb|EAT89550.2| hypothetical protein SNOG_02819 [Phaeosphaeria nodorum SN15]
          Length = 2246

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/163 (14%), Positives = 55/163 (33%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +            + +   I  P ++K  +GG   GI  +++++        ++S   G
Sbjct: 222 HIYEQGCTKSWEEGLAAAKKIGFPVMVKASEGGGGKGIRKVEREEDFQQLYAAAASEIPG 281

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +       L   ++ D   +   +            K        V P K   +
Sbjct: 282 SPIFIMKLAGSARHLEVQLVADQYGNNISLFGRDCSVQRRHQKIIEEAPVTVAPNKTFQE 341

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +++ A    + +G       ++L+     K ++LE+N +
Sbjct: 342 ----MEKAAVSLGRLVGYVSAGTVEYLYSHAEDKFYFLELNPR 380


>gi|159897278|ref|YP_001543525.1| acetyl-CoA carboxylase, biotin carboxylase [Herpetosiphon
           aurantiacus ATCC 23779]
 gi|159890317|gb|ABX03397.1| acetyl-CoA carboxylase, biotin carboxylase [Herpetosiphon
           aurantiacus ATCC 23779]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 56/187 (29%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K + GG   G+ V+ +   +      + +         + Y++       
Sbjct: 148 ADGIGYPVLLKAVAGGGGRGMRVVNQPDELARAFNTARAEAEAAFGRGDLYMEKYLPVVR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L                L+          P+     ++ +++   A    + IG
Sbjct: 208 HVEIQILADQHGHAIHLGERDCSLQRRHQKVVEEGPSPALTPELRQKMGEAALHGVREIG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
                  +FL D      +++E+N +              +       G    +L+ W +
Sbjct: 268 YYNAGTMEFLLDHQGN-FYFMEMNTR----------LQVEHPVTEWLTGL---DLVKWQI 313

Query: 294 EDASCLR 300
             AS  R
Sbjct: 314 RIASGER 320


>gi|91090153|ref|XP_972190.1| PREDICTED: similar to carbamoyl-phosphate synthase large chain
           [Tribolium castaneum]
 gi|270013749|gb|EFA10197.1| hypothetical protein TcasGA2_TC012392 [Tribolium castaneum]
          Length = 2198

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 84/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 415 SGSQAIKALREENIQTVLINPNIATVQTSKGLADKVYFLPLVPDYVEQVIRVERPGGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     I +   I    + I A   + D+    + +      V    +
Sbjct: 475 TFGGQTGLNCGVELQKAGIFDKYNIQILGTPIQAIIDTEDRKIFTERIAAIGEKVAPSMA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P + +       LG         +    L   +  H  QL+I++
Sbjct: 535 AHSVEEALEAAEQLGYPVMARAAFSLGGLGSGFANSKDELKT--LAVQALAHSSQLIIDK 592

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 593 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 651

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 652 AIKVIRHFGVIGECNIQYAVNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 707

Query: 291 WM 292
            +
Sbjct: 708 KL 709


>gi|218767558|ref|YP_002342070.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis Z2491]
 gi|121051566|emb|CAM07864.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis Z2491]
 gi|319409822|emb|CBY90130.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Neisseria meningitidis WUE 2594]
          Length = 453

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKIGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGKACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|15609638|ref|NP_217017.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Rv]
 gi|15842029|ref|NP_337066.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31793681|ref|NP_856174.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium bovis AF2122/97]
 gi|121638383|ref|YP_978607.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha accA1 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|148662337|ref|YP_001283860.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis H37Ra]
 gi|148823698|ref|YP_001288452.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis F11]
 gi|215404438|ref|ZP_03416619.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 02_1987]
 gi|215412267|ref|ZP_03421027.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis 94_M4241A]
 gi|215427884|ref|ZP_03425803.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T92]
 gi|215446751|ref|ZP_03433503.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T85]
 gi|218754234|ref|ZP_03533030.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis GM 1503]
 gi|219558501|ref|ZP_03537577.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Mycobacterium tuberculosis T17]
 gi|224990877|ref|YP_002645564.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253798419|ref|YP_003031420.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 1435]
 gi|254232630|ref|ZP_04925957.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA1 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|254551548|ref|ZP_05141995.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis '98-R604 INH-RIF-EM']
 gi|260187508|ref|ZP_05764982.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|260201626|ref|ZP_05769117.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289444032|ref|ZP_06433776.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289448146|ref|ZP_06437890.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289553707|ref|ZP_06442917.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 605]
 gi|289570661|ref|ZP_06450888.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T17]
 gi|289746283|ref|ZP_06505661.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           02_1987]
 gi|289751110|ref|ZP_06510488.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T92]
 gi|289758633|ref|ZP_06518011.1| acetyl/propionyl-CoA carboxylase [Mycobacterium tuberculosis T85]
 gi|289762669|ref|ZP_06522047.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|294994391|ref|ZP_06800082.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis 210]
 gi|297635109|ref|ZP_06952889.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 4207]
 gi|297732100|ref|ZP_06961218.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN R506]
 gi|298525973|ref|ZP_07013382.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|306776774|ref|ZP_07415111.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu001]
 gi|306780540|ref|ZP_07418877.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu002]
 gi|306785302|ref|ZP_07423624.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu003]
 gi|306789655|ref|ZP_07427977.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu004]
 gi|306793982|ref|ZP_07432284.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu005]
 gi|306798377|ref|ZP_07436679.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu006]
 gi|306804257|ref|ZP_07440925.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu008]
 gi|306807702|ref|ZP_07444370.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu007]
 gi|306968654|ref|ZP_07481315.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu009]
 gi|306972885|ref|ZP_07485546.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu010]
 gi|307080599|ref|ZP_07489769.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu011]
 gi|307085185|ref|ZP_07494298.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu012]
 gi|313659434|ref|ZP_07816314.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN V2475]
 gi|61219642|sp|P0A508|BCCA_MYCTU RecName: Full=Acetyl-/propionyl-coenzyme A carboxylase alpha chain;
           Includes: RecName: Full=Biotin carboxylase; Includes:
           RecName: Full=Biotin carboxyl carrier protein;
           Short=BCCP
 gi|61219643|sp|P0A509|BCCA_MYCBO RecName: Full=Acetyl-/propionyl-coenzyme A carboxylase alpha chain;
           Includes: RecName: Full=Biotin carboxylase; Includes:
           RecName: Full=Biotin carboxyl carrier protein;
           Short=BCCP
 gi|44570|emb|CAA79609.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis]
 gi|2113934|emb|CAB08919.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium
           tuberculosis H37Rv]
 gi|13882307|gb|AAK46880.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Mycobacterium
           tuberculosis CDC1551]
 gi|31619274|emb|CAD97390.1| PROBABLE ACETYL-/PROPIONYL-COENZYME A CARBOXYLASE ALPHA CHAIN
           (ALPHA SUBUNIT) ACCA1: BIOTIN CARBOXYLASE + BIOTIN
           CARBOXYL CARRIER PROTEIN (BCCP) [Mycobacterium bovis
           AF2122/97]
 gi|121494031|emb|CAL72509.1| Probable acetyl-/propionyl-coenzyme A carboxylase alpha chain
           (alpha subunit) accA1 [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|124601689|gb|EAY60699.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain (alpha
           subunit) accA1 : biotin carboxylase + biotin carboxyl
           carrier protein [Mycobacterium tuberculosis C]
 gi|148506489|gb|ABQ74298.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain AccA1 : biotin
           carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis H37Ra]
 gi|148722225|gb|ABR06850.1| acetyl-/propionyl-coenzyme A carboxylase alpha subunit accA1 :
           biotin carboxylase + biotin carboxyl carrier protein
           [Mycobacterium tuberculosis F11]
 gi|224773990|dbj|BAH26796.1| putative acetyl-/propionyl-coenzyme A carboxylase alpha chain
           subunit alpha [Mycobacterium bovis BCG str. Tokyo 172]
 gi|253319922|gb|ACT24525.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 1435]
 gi|289416951|gb|EFD14191.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T46]
 gi|289421104|gb|EFD18305.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CPHL_A]
 gi|289438339|gb|EFD20832.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 605]
 gi|289544415|gb|EFD48063.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T17]
 gi|289686811|gb|EFD54299.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           02_1987]
 gi|289691697|gb|EFD59126.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis T92]
 gi|289710175|gb|EFD74191.1| biotin carboxylase [Mycobacterium tuberculosis GM 1503]
 gi|289714197|gb|EFD78209.1| acetyl/propionyl-CoA carboxylase [Mycobacterium tuberculosis T85]
 gi|298495767|gb|EFI31061.1| biotin carboxyl carrier protein [Mycobacterium tuberculosis
           94_M4241A]
 gi|308214835|gb|EFO74234.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu001]
 gi|308326606|gb|EFP15457.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu002]
 gi|308330029|gb|EFP18880.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu003]
 gi|308333872|gb|EFP22723.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu004]
 gi|308337672|gb|EFP26523.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu005]
 gi|308341353|gb|EFP30204.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu006]
 gi|308345890|gb|EFP34741.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu007]
 gi|308349145|gb|EFP37996.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu008]
 gi|308353769|gb|EFP42620.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu009]
 gi|308357712|gb|EFP46563.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu010]
 gi|308361653|gb|EFP50504.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu011]
 gi|308365265|gb|EFP54116.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis SUMu012]
 gi|323718909|gb|EGB28063.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis CDC1551A]
 gi|326904115|gb|EGE51048.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis W-148]
 gi|328458187|gb|AEB03610.1| acetyl-/propionyl-CoA carboxylase alpha subunit accA1
           [Mycobacterium tuberculosis KZN 4207]
          Length = 654

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IKP  GG   G+ +++    +P  L+ +             +++   L   
Sbjct: 148 AAEVGYPVLIKPSAGGGGKGMRLVQDPARLPEALVSARREAMSSFGDDTLFLERFVLRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +      + +   A    + + 
Sbjct: 208 HIEVQVLADAHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPQTRERIGVAACNTARCVD 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 268 YVGAGTVEFIVSAQRPDEFFFMEMNTR 294


>gi|330860714|emb|CBX71006.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           enterocolitica W22703]
          Length = 393

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 80/273 (29%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVELENMGQKVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTESAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ +  +        +   G     +  V+G+   
Sbjct: 143 QAVSEIGYPCIVKPVMSSSGKGQSLIRNEPQLQAA--WDYAQQGGRAGGGKVIVEGLIHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   +++  +     +     +            P  +        + +A    +A+
Sbjct: 201 DFEITLLTINAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDVAVARAKEIASQVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|329765427|ref|ZP_08257006.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329138068|gb|EGG42325.1| carbamoyl-phosphate synthase, large subunit [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 993

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 26/259 (10%), Positives = 79/259 (30%), Gaps = 15/259 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +     P      + G    +  +      + I  T +  +  A +  K  ++  
Sbjct: 535 ERILDIAEFENPKGIVTCVGGQTANNLTLGLAKNGVNIIGTSANDVDRAENRSKFSAELD 594

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                 P   +             +  P +++P    S   + V+     +   + +++ 
Sbjct: 595 KLHIQQPRWQAFANIVEAKSFAQDVGFPVIVRPSYVLSGAAMKVVWSQDELKKYVKEATD 654

Query: 160 WNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
            +    ++I +++ + +E+    + + +  +    V   +       +S      + P +
Sbjct: 655 VSPDHPVVISKFMLNSLEVDVDGVCNGTDVIIGAIVEHIESAG---VHSGDAMMCIPPWR 711

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN-----VQPG---MTP 270
           +     + +   +    +    +G     FL       V+ +E+N       P    +  
Sbjct: 712 LNNKTIETITEYSTKIAKTFNVKGPFNLQFLI--HDDHVYVIELNIRASRSMPFVSKLVK 769

Query: 271 VSIFPEMAAYA-GYSFREL 288
            ++    A    G    +L
Sbjct: 770 TNLIALAAKAVLGMPLPKL 788



 Score = 42.2 bits (97), Expect = 0.093,   Method: Composition-based stats.
 Identities = 31/210 (14%), Positives = 66/210 (31%), Gaps = 14/210 (6%)

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
            +      +  V    ++       +    +  P +I+        G  V   +  +   
Sbjct: 46  FKDSMNQCNVPVLKSRTVKNFSDAKEIAEELGYPVIIRVAYTLGGKGGGVAYNEIELHEI 105

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + +    +   Q+L+E+Y+ G                 + V   +       ++  N   
Sbjct: 106 VERGLRASLVGQVLVEEYI-GHWKQIEYEVMQDYGGNNVIVCNMENVLSMKVHTGDNIVV 164

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS- 272
                I    Y  ++  A  A + +G  G     +  D +S +   +EIN  P ++  S 
Sbjct: 165 APSQTIDNHEYHMLRTAALRATKHVGIVGECNIQYALDSVSDRYVAIEIN--PRLSRSSA 222

Query: 273 ------IFPEMAAYA----GYSFRELLLWM 292
                  +P     A    GY+  EL+  +
Sbjct: 223 LASKATGYPLAYMSAKIGLGYTLPELVNRI 252


>gi|299483121|gb|ADJ19309.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Pantophthalmus sp.
           MDT-2010]
          Length = 428

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 33/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 72  SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGVLL 131

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V     
Sbjct: 132 TFGGQTALNCGVELDKAGIFSRYNVRILGTPIRSIIETEDRKIFAERVNEIGEKVAPSEP 191

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +               ++     L   +  +H +QL+I++
Sbjct: 192 VFSVQEALDAAERLGYPVMARXAAFSLGGLGSGFANNKDELSSLAHQAL-SHSNQLIIDK 250

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 251 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 309

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 310 AMKVIKHFGVVGECNIQYALNPFSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 365

Query: 291 WM 292
            +
Sbjct: 366 KL 367


>gi|291405643|ref|XP_002719123.1| PREDICTED: acetyl-Coenzyme A carboxylase alpha-like [Oryctolagus
           cuniculus]
          Length = 2505

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 424 LRVNWQENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 483

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 484 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 540

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 541 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 598

Query: 264 VQ 265
            +
Sbjct: 599 PR 600


>gi|239821004|ref|YP_002948189.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
 gi|239805857|gb|ACS22923.1| acetyl-CoA carboxylase, biotin carboxylase [Variovorax paradoxus
           S110]
          Length = 450

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++ + ++   +  +           E Y++   L   
Sbjct: 149 AREIGYPVIVKAAGGGGGRGMRVVQGEPALLDAMALTREEARQAFGNPEVYIEKFLLHPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  +             L+          PA    + +  EV      A + IG
Sbjct: 209 HVEIQVLADSHGHAVWLGSRDCSLQRRHQKVIEEAPAPGIDEALMAEVGERCAAACRQIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G+   +FL+       +++E+N +
Sbjct: 269 YCGVGTFEFLY--EKGAFYFIEMNTR 292


>gi|204930994|ref|ZP_03221820.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
 gi|204320038|gb|EDZ05243.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Javiana str. GA_MM04042433]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADNEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|197123513|ref|YP_002135464.1| pyruvate carboxylase [Anaeromyxobacter sp. K]
 gi|196173362|gb|ACG74335.1| pyruvate carboxylase [Anaeromyxobacter sp. K]
          Length = 1148

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P +IK   GG   G+ V +  + +   L+ + S           +++      
Sbjct: 151 FAKQHGYPIIIKASAGGGGRGMRVARSQKELLEGLVSARSEARAAFGNPAVFLERYIERP 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L      +         ++          P+    +   + +   A    +++
Sbjct: 211 KHIEVQVLGDHHGELVHLFERDCSIQRRHQKVVEFAPSLALTEAQREAICGDALKIARSV 270

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
             R     +FL DP   + +++E+N +
Sbjct: 271 SYRNAGTVEFLVDPQ-GRHYFIEVNPR 296


>gi|159488652|ref|XP_001702319.1| biotin carboxylase, acetyl-CoA carboxylase component [Chlamydomonas
           reinhardtii]
 gi|158271224|gb|EDO97049.1| biotin carboxylase, acetyl-CoA carboxylase component [Chlamydomonas
           reinhardtii]
          Length = 483

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 35/212 (16%), Positives = 71/212 (33%), Gaps = 7/212 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E      I     + +         L  DK  ++  +   GVP  P     I  +
Sbjct: 101 YGFLSERAEFVEICTDHGLEFIGPKPQQIRLMGDKSTARDTMKKAGVPTVPGSEGLIQDD 160

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              + +   I  P +IK   GG   G+ +  K++ +     Q+             Y++ 
Sbjct: 161 ADAIANAQRIGFPVMIKATAGGGGRGMRLCTKEEDLMPLFKQAQQEAEAAFGNGAVYMER 220

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +    L      V         ++  +       P+     ++ K +   A  
Sbjct: 221 FVQDPRHIEFQVLADKYGNVVHLGERDCSVQRRNQKLVEEAPSPALTPEVRKAMGDAAVA 280

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +AIG  G+   +FL++      +++E+N +
Sbjct: 281 AAKAIGYVGVGTIEFLWEKKG--FYFMEMNTR 310


>gi|220928371|ref|YP_002505280.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulolyticum H10]
 gi|219998699|gb|ACL75300.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium
           cellulolyticum H10]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 71/216 (32%), Gaps = 8/216 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASAL------SMDKMRSKQVVSSCGVPVCPS 110
            +H  +G        + L E         ++ +        +  R  Q  S   +P    
Sbjct: 77  AIHPGYGLLSENAKFVSLCEKCNIVFIGPSADIISKMGDKDNARRMMQNASVPVIPGSDI 136

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +  +   + I  P +IK   GG   GI ++ K+       L +SS           
Sbjct: 137 IENPKDAIKIANDIGYPLLIKARAGGGGKGIRLVNKEDEFESAYLTASSEAKSAFGDGAC 196

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQR 229
           Y++        +    L      V         L+          P+  I  ++ K++  
Sbjct: 197 YIEKYLSPVKHVEMQILCDNYGKVICLGERECSLQRKHQKLVEESPSTAIDTELRKKMME 256

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++    +A    G+   +FL D  S   +++E+N +
Sbjct: 257 VSVKVAKATNYTGVGTVEFLLDKDSN-FYFMEMNTR 291


>gi|157371045|ref|YP_001479034.1| phosphoribosylglycinamide formyltransferase 2 [Serratia
           proteamaculans 568]
 gi|157322809|gb|ABV41906.1| phosphoribosylglycinamide formyltransferase 2 [Serratia
           proteamaculans 568]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D + +  V+   +PD     +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGNALKAVIEQERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATSMLVELEQQGHRVVPCAEATRLTMNREGIRRLAAETLGLPT-SSYRFADGETAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G  +I+    +        +   G        V+G+   
Sbjct: 143 QAVDEIGYPCIIKPVMSSSGKGQSLIRTPDQLKTA--WDYAQQGGRAGGGRVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++        Q +A    +A+
Sbjct: 201 DFEITLLTISAVDGVHFCAPIGHRQEDG--DYRESWQPQQMSDLALSRAQAIAENVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|38679971|ref|NP_942134.1| acetyl-CoA carboxylase 1 isoform 3 [Homo sapiens]
 gi|119577984|gb|EAW57580.1| hCG30204, isoform CRA_c [Homo sapiens]
          Length = 2288

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 54/182 (29%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 207 LRVDWQENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 266

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 267 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 323

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +                 +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 324 -RRHQKIIEEAPATIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 381

Query: 264 VQ 265
            +
Sbjct: 382 PR 383


>gi|332673885|gb|AEE70702.1| acetyl-CoA carboxylase subunit A [Helicobacter pylori 83]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 44/259 (16%), Positives = 85/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEEGV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            K +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RKRLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM++ A
Sbjct: 313 EMVSGLN---LIEWMIKIA 328


>gi|254497546|ref|ZP_05110338.1| acyl CoA carboxylase subunit alpha subunit [Legionella drancourtii
           LLAP12]
 gi|254353263|gb|EET12006.1| acyl CoA carboxylase subunit alpha subunit [Legionella drancourtii
           LLAP12]
          Length = 654

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +  +      L  +   +          ++ + L   
Sbjct: 148 AKKIGFPVLIKAANGGGGKGMRTVHSESEFSSALAGAKRESMTSFADDTMIIEKLVLHPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      V         ++          PA      + +++   A    ++I 
Sbjct: 208 HVELQIMADNHGNVVHLFERDCSIQRRHQKIIEEAPAPNLSPALRQKLADAACDVARSIK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YSGAGTVEFLVDG-DEHFYFMEMNTR 292


>gi|218526192|gb|ACK86503.1| carbamoyl-phosphate synthase [Ithone fulva]
          Length = 717

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 126 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 185

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I          + I +   + D+    + +S     V    +
Sbjct: 186 TFGGQTALNCGVELEKAGIFAKYGCNILGTPIQSIIETEDRKIFAEKISEIGEKVAPSAA 245

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 246 VYSVEEALDAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLKS--LATQALAHSNQLIIDK 303

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 304 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 362

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 363 AINVIRHFRVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 418

Query: 291 WM 292
            +
Sbjct: 419 KL 420


>gi|254462392|ref|ZP_05075808.1| RimK-like ATP-grasp domain family [Rhodobacterales bacterium
           HTCC2083]
 gi|206678981|gb|EDZ43468.1| RimK-like ATP-grasp domain family [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 676

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 49/178 (27%), Gaps = 21/178 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ +   D         S +           +++        +   
Sbjct: 153 YPVMIKASAGGGGKGMRIAWNDDEAREGFQSSKNEAANSFGDDRIFIEKFITQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L  +             ++          P+    +  ++     A    QA+G     
Sbjct: 213 VLCDSHGNGIYLGERECSIQRRQQKVVEEAPSPFLDEATRKAMGEQAVALAQAVGYASAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
             +F+ D      ++LE+N +              +       G    +L+  M+  A
Sbjct: 273 TVEFIVDGAKN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRVA 316


>gi|188532434|ref|YP_001906231.1| acetyl-CoA carboxylase biotin carboxylase subunit [Erwinia
           tasmaniensis Et1/99]
 gi|188027476|emb|CAO95323.1| Acetyl CoA carboxylase, biotin carboxylase subunit [Erwinia
           tasmaniensis Et1/99]
          Length = 449

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPPPSVKSYLNIPALISAAEIT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPKADTIRLMGDKVSAITAMKKAGVPTVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P +IK   GG   G+ V++ D+ +   +  + +      
Sbjct: 134 SDGPLTEDMDKNRAFAKRIGYPVIIKASGGGGGRGMRVVRSDKDLEQSINMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   I  RG    +FL+   + + +++E+N +
Sbjct: 254 RYIGERCSKACIDISYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|147677525|ref|YP_001211740.1| biotin carboxylase [Pelotomaculum thermopropionicum SI]
 gi|146273622|dbj|BAF59371.1| biotin carboxylase [Pelotomaculum thermopropionicum SI]
          Length = 462

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 36/279 (12%), Positives = 74/279 (26%), Gaps = 42/279 (15%)

Query: 22  CASALEDAGFKVSQIDVDRS-VGLVLAH----------------LKPDLAFNVL------ 58
              A  + G K   +  D       L                  L  D   N L      
Sbjct: 18  VMRACRELGIKTVAVYSDADRGMSYLNEADEAYNIGPANPLKSYLNIDAIINALKASGAD 77

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP----VCP 109
                +G   E+ L    +      +             K   +++ +  GVP       
Sbjct: 78  AVHPGYGFLSENALFAETVSASGATWVGPPPPVLKAIDSKCFCRKIATDAGVPVVPGTIN 137

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS-----SSWNHGD 164
           +I               P V+K  KGG   GI ++K++  +     +       ++ H +
Sbjct: 138 TINEVNEVYQFAARYGYPIVLKLDKGGGGKGIELVKEESQVKGAFERLSRIGLMAFGHPE 197

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + ++      +    + D   +   +   +        +             +  +  
Sbjct: 198 CYIEKEVNSPRHIEIQFLADKYGNCICLGERECSVQ----RRYQKIIEESPSPVVNENER 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K +         A+G  G    +F         +++EIN
Sbjct: 254 KRLFDYTRQLALAMGYEGAGTMEF-LRSADGHFYFMEIN 291


>gi|293366947|ref|ZP_06613622.1| phosphoribosylaminoimidazole carboxylase [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|291318922|gb|EFE59293.1| phosphoribosylaminoimidazole carboxylase [Staphylococcus
           epidermidis M23864:W2(grey)]
          Length = 375

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 28/264 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNFGEDGLVQAI 71
           GK  A + +  G+KV  +D +       V     H   D   A N L  N          
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDDEQALNQLGENSDVVTYEFEN 80

Query: 72  L------ELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL 123
           +      +L ++ +   G  A  L  D++  KQ    ++  +     I  N+  + +   
Sbjct: 81  ISSEQLKKLTQLYHIPQGYQAIELLQDRLTEKQTLLEANTQIVPFVQIQTNQDLLKAIEK 140

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +  P+++K   GG      + ++ D  +              +  ++   +         
Sbjct: 141 LGFPFIVKTRFGGYDGKGQILVRNDSELDEAYQLVDKQECVAEQYLDIQKEVSLTVTIGN 200

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +           +   ++                  D   E ++      +AI   G
Sbjct: 201 EQQTTYFPLQENEHQNQILFKTVV-----------PARSDKENEARKEVEKITRAIHFVG 249

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               +F  D  +  ++  EI  +P
Sbjct: 250 TFTVEFFIDKENN-LYVNEIAPRP 272


>gi|224476637|ref|YP_002634243.1| acetyl-CoA carboxylase biotin carboxylase subunit [Staphylococcus
           carnosus subsp. carnosus TM300]
 gi|222421244|emb|CAL28058.1| biotin carboxylase (subunit of acetyl-CoA carboxylase)
           [Staphylococcus carnosus subsp. carnosus TM300]
          Length = 450

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 32/248 (12%), Positives = 76/248 (30%), Gaps = 15/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   +   +S    L              D      +G   E+G    + E  ++ +   
Sbjct: 46  EAYCVGPTQSKDSYLNIANILSIATSTGCDAVHPG-YGFLSENGDFAELCEACQLKFIGP 104

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
              +      K  +K+ +    VPV P     +        +   I  P +IK   GG  
Sbjct: 105 NYESIQKMGIKDVAKEEMIRANVPVVPGSEGLVESIEDAKKTAEEIGYPVIIKATAGGGG 164

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            GI V + ++ +      +             Y++        +    +      V +  
Sbjct: 165 KGIRVARDEKELENGYKMTQQEAETAFGNGGLYLEKFIENFRHIEFQIMGDQFGNVIQLG 224

Query: 199 FYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+ I   +   E+   +  A +A+        ++++D  +   
Sbjct: 225 ERDCTIQRRMQKLVEEAPSPILTAEKRAEMGAASIRAAKAVNYENAGTIEYIYDLDTDDF 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|221136030|ref|XP_002156927.1| PREDICTED: similar to methylcrotonyl-CoA carboxylase, partial
           [Hydra magnipapillata]
          Length = 297

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +      + ++ S           +++    +  
Sbjct: 147 AGEIGFPILIKASAGGGGKGMRIVENEAEFESQMDRAISEATNAFGDGSVFIEKYVGSPR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +  +   +         ++          P+ +   +I K +   A    Q+  
Sbjct: 207 HIEIQIMADSHGNILYLFERECSIQRRHQKVVEEAPSSVLTPEIRKAMGEAAVKVAQSCD 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      ++LE+N +
Sbjct: 267 YLGAGTVEFLLDENKN-FYFLEMNTR 291


>gi|124008606|ref|ZP_01693297.1| pyruvate carboxylase [Microscilla marina ATCC 23134]
 gi|123985850|gb|EAY25714.1| pyruvate carboxylase [Microscilla marina ATCC 23134]
          Length = 1156

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+K D  +     ++ S           +++       
Sbjct: 155 AQHIGYPIMVKASAGGGGRGMRVVKNDAELTKAYKEARSEALKAFGDDTVFLEKYVENPK 214

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    +      +         ++        + P          ++ + A    Q++ 
Sbjct: 215 HIEVQIMADNHGNMVHLFERDCSVQRRFQKVVEIAPCITLSQAAKDKLYQYALSICQSVN 274

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   +FL D     ++++E+N +
Sbjct: 275 YNNVGTVEFLVD-SDENIYFIEVNPR 299


>gi|78484788|ref|YP_390713.1| acetyl-CoA carboxylase, biotin carboxylase [Thiomicrospira
           crunogena XCL-2]
 gi|78363074|gb|ABB41039.1| acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha /
           biotin carboxylase [Thiomicrospira crunogena XCL-2]
          Length = 449

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + S         E Y++    T  
Sbjct: 149 AKEIGYPIIIKASGGGGGRGMRVVHTESNLIKSIQLTKSEAGSFFGNPEVYMEKFLETPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          PA  I  +    + +    A   IG
Sbjct: 209 HIEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITEEQRNRIGQACVNACLEIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|88799445|ref|ZP_01115022.1| acetyl-CoA carboxylase [Reinekea sp. MED297]
 gi|88777755|gb|EAR08953.1| acetyl-CoA carboxylase [Reinekea sp. MED297]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 75/281 (26%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A ++ G K   +       L    L  +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVKLADEAVCIGPASSTESYLNIPAIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E       +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  DADAIHPGYGFLAERADFAEQIEKSGFKFIGPTADVIRLMGDKVSAIEAMKKAGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V+ +++ +   +  + S      
Sbjct: 134 SDGPVPKDPTRCKEIAQRIGYPVIIKAAAGGGGRGMRVVHEEKDLIGSIEVTQSEAASAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                Y++        +    +   +            L+          P   I  D  
Sbjct: 194 GDGTVYMEKFLTNPRHVEIQVIADGQGNAIHLGDRDCSLQRRHQKVLEEAPAPHIDPDAR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +VQ     A   I  RG    +FL+       +++E+N +
Sbjct: 254 AKVQEACVNACINIHYRGAGTFEFLY--EDGHFYFIEMNTR 292


>gi|325121811|gb|ADY81334.1| probable biotin carboxylase subunit of acetyl-CoA carboxylase
           [Acinetobacter calcoaceticus PHEA-2]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|293608455|ref|ZP_06690758.1| conserved hypothetical protein [Acinetobacter sp. SH024]
 gi|292829028|gb|EFF87390.1| conserved hypothetical protein [Acinetobacter sp. SH024]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|302878920|ref|YP_003847484.1| phosphoribosylglycinamide formyltransferase 2 [Gallionella
           capsiferriformans ES-2]
 gi|302581709|gb|ADL55720.1| phosphoribosylglycinamide formyltransferase 2 [Gallionella
           capsiferriformans ES-2]
          Length = 403

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/283 (11%), Positives = 77/283 (27%), Gaps = 25/283 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLAH----LKPDLAFNVL 58
           G+    AL+  G +   +D                +D + G  L       KPDL    +
Sbjct: 28  GREVIIALQRLGIETIAVDRYPDAPGHQLAHRAHVIDMTDGAALRALVELEKPDLIVPEI 87

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +   +     L  +  T      +       R                       
Sbjct: 88  EAIATDMLALIENDGLARVIPTARATRLTMNREGIRRLAAETLGLPTSPYRFADSLAQMR 147

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIEL 177
            +   I  P +IKP+   S  G   +     +      ++S +  +Q  +I + +   + 
Sbjct: 148 AAIEEIGYPCIIKPVMSSSGKGQSKVDTPDEVDAAWEYAASGSRVNQGRVIVEGMICFDY 207

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   +L  +             ++          P  +     +  + +A      
Sbjct: 208 EITLLTVRALGASGHTETHYCEPIGHVQVQGDYVESWQPQVMSPLALQRARDIAGKVTGD 267

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +G  G+   +        +V++ E++ +P      +       
Sbjct: 268 LGGLGLFGVELFV--KGDEVWFSEVSPRP--HDTGMVTMCTQA 306


>gi|224076684|ref|XP_002199465.1| PREDICTED: acetyl-Coenzyme A carboxylase alpha [Taeniopygia
           guttata]
          Length = 2332

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      + ++ + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 263 LRVDWQENDLQKRILSVPPELYEKGYVRDADDGLRAAEEVGYPVMIKASEGGGGKGIRKV 322

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 323 NNADDFPNLFRQVQTEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 379

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           +     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 380 -RRHQKIIEEAPASIATSTVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 437

Query: 264 VQ 265
            +
Sbjct: 438 PR 439


>gi|242776582|ref|XP_002478864.1| acetyl-CoA carboxylase, putative [Talaromyces stipitatus ATCC
           10500]
 gi|218722483|gb|EED21901.1| acetyl-CoA carboxylase, putative [Talaromyces stipitatus ATCC
           10500]
          Length = 2285

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V            +++   I  P ++K  +GG   GI  +++++        ++S   G
Sbjct: 213 FVYDMGCTHSWEEGLEAAKKIGFPVMVKASEGGGGKGIRKVEREEDFATLYNAAASEIPG 272

Query: 164 DQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +   +   L   ++ D   +   +            +                +
Sbjct: 273 SPIFIMKLASNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIANNN 328

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 329 TFQAMERAAVSLGKLVGYVSAGTVEYLYSHQDDKFYFLELNPR 371


>gi|189206806|ref|XP_001939737.1| pyruvate carboxylase subunit A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
 gi|187975830|gb|EDU42456.1| pyruvate carboxylase subunit A [Pyrenophora tritici-repentis
           Pt-1C-BFP]
          Length = 1220

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/183 (12%), Positives = 55/183 (30%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+I  +K + +        S           +++       
Sbjct: 129 AERIGFPVMLKATGGGGGMGLITCEKVEEVREGFRMVQSRGATLFKNPGVFLEAFYPASH 188

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI---PLDIYKEVQRLAFLAHQA 237
            +                     ++          P+       ++ +++   A    ++
Sbjct: 189 HVEVQVFGNGTGQAVHFGERECSIQRRHQKVIEECPSPFVERHPELRQKLGDAAVRLAES 248

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           I        ++L D  +   F+LE+N             +    G +   +  +L+  M+
Sbjct: 249 IQYGSAGTIEYLVDDKTGDFFFLEMNT-----------RLQVEHGITELCYGIDLVELML 297

Query: 294 EDA 296
           + A
Sbjct: 298 KQA 300


>gi|126641419|ref|YP_001084403.1| putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii ATCC 17978]
 gi|126387303|gb|ABO11801.1| putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii ATCC 17978]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|94501296|ref|ZP_01307817.1| phosphoribosylglycinamide formyltransferase 2 [Oceanobacter sp.
           RED65]
 gi|94426567|gb|EAT11554.1| phosphoribosylglycinamide formyltransferase 2 [Oceanobacter sp.
           RED65]
          Length = 394

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/285 (15%), Positives = 84/285 (29%), Gaps = 35/285 (12%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----RS 41
            +L G  S E    L  GK  A  L+  G +V  +D                VD    R+
Sbjct: 16  VLLCG--SGE----L--GKEVAIELQRLGCEVIAVDRYADAPAMQVAHRHHTVDMLNGRA 67

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V+   +P L    +     +            +P   +  L       +  + + +S
Sbjct: 68  LRRVIELEQPHLIVPEIEAIATDTLAELESEGFNVVPTAKATQLTMNREGIRRLAAEELS 127

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
                            ++   I  P V+KP+   S  G  ++K++  I        +  
Sbjct: 128 IKT-SPYEFAATFDEYQNAIKNIGLPCVVKPIMSSSGKGQSLVKRESDIQKA--WDYAQE 184

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            G     +  ++G            L V               + +        P  +  
Sbjct: 185 GGRAGKGKVIIEG--FVDFDFEITLLTVRHRDGTSFCAPIGHRQENGDYQESWQPQAMSE 242

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
                 Q +A     A+G +G+   +        +V + E++ +P
Sbjct: 243 TALNSAQDIAEKVTSALGGKGLFGVELFV--KGDEVIFSEVSPRP 285


>gi|307322696|ref|ZP_07602022.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
 gi|306891653|gb|EFN22513.1| ATP-dependent carboxylate-amine ligase domain protein ATP-grasp
           [Sinorhizobium meliloti AK83]
          Length = 442

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 58/278 (20%), Positives = 101/278 (36%), Gaps = 33/278 (11%)

Query: 26  LEDAGFKVSQIDVD-----RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           L   G +  Q+D +     +SV   L  L  D+A   L G  G D  V   +  L   + 
Sbjct: 43  LAAEGVEAVQVDTNDLDAMKSVYSRL-KLTHDIA--GLTGFSGLDESVYVTVGKLCRHFG 99

Query: 81  HSGILASAL--SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGG 136
             G   +++    DK   +Q++   GVP+    +    T        I  P VIKP+ G 
Sbjct: 100 LPGPDPASIKQCHDKFIQRQLLEHAGVPIPDYRVATNATEVESAVAEIGLPVVIKPVVGS 159

Query: 137 SSLGIIVIKKDQSIPLD----LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
            S G+ + +    +       L  +  W    ++L+E++  G   T  +MG   + +   
Sbjct: 160 GSSGVQMCRTVDEVAEHTRHLLGGTHMWQSSPRILVEEFAQGQYFTVDMMGGRVVGIGAG 219

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG-CRGISRSDFLFD 251
                  + Y          +  PA +  D    +   +    +A+G   G +  +F + 
Sbjct: 220 DFGPPPHFVYRE--------YSYPALLSNDESARIADDSLSCLRALGLGWGPANIEFRWT 271

Query: 252 PLSRKVFWLEINV-QPGMTPVSIFPEMAA-YAGYSFRE 287
                   +E+N   PG TP    PE+     G    +
Sbjct: 272 KRG--PVVIEVNPRLPG-TPD---PELIQLAYGVDLVD 303


>gi|239503650|ref|ZP_04662960.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii AB900]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|184157728|ref|YP_001846067.1| acetyl/propionyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii ACICU]
 gi|332876411|ref|ZP_08444180.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
 gi|183209322|gb|ACC56720.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii ACICU]
 gi|322508035|gb|ADX03489.1| Putative acyl-CoA carboxylase alpha chain protein [Acinetobacter
           baumannii 1656-2]
 gi|323517621|gb|ADX92002.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter
           baumannii TCDC-AB0715]
 gi|332735421|gb|EGJ66479.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6014059]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|91775864|ref|YP_545620.1| acetyl-CoA carboxylase [Methylobacillus flagellatus KT]
 gi|91709851|gb|ABE49779.1| acetyl-CoA carboxylase, biotin carboxylase [Methylobacillus
           flagellatus KT]
          Length = 472

 Score = 46.0 bits (107), Expect = 0.006,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 84/277 (30%), Gaps = 35/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G K   I  D      L   K D A+N                         
Sbjct: 17  IVRACSEMGIKSVAIYSDAD-RHALHVKKADEAYNIGSDPVLGYLNAHNIVNLAVASGCD 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            LH   G   E+  +  I     I +            DK++++  +   G+P  P    
Sbjct: 76  ALHPGYGFLSENPELAEICARRGIKFIGPDAKVIRQMGDKIQARTAMIKAGIPCVPGSEG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P ++K   GG   GI     ++ +  +  +  S         E
Sbjct: 136 NLENLEEARKLAAKIGYPVMLKATNGGGGRGIRRCNDEKELLSNYDRVISEASKAFGKPE 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            +++   +    +    L  +   V         ++  +     + P+        + + 
Sbjct: 196 VFLEKCVVNPRHIEVQVLADSHGNVIHLFERDCSIQRRNQKLIEIAPSPQLSKAQREYIG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            LA  A +A+G +     +FL D      +++E+N +
Sbjct: 256 NLAVKAAKAVGYKNAGTVEFLLD-SDNNFYFMEMNTR 291


>gi|260555406|ref|ZP_05827627.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
 gi|260411948|gb|EEX05245.1| urea carboxylase [Acinetobacter baumannii ATCC 19606]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|218526204|gb|ACK86509.1| carbamoyl-phosphate synthase [Zeugomantispa minuta]
          Length = 720

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 90/307 (29%), Gaps = 34/307 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   ++ +                       V  V+   +P     
Sbjct: 130 SGSQAIKALKEENIQTVLMNPNIATVQTSKGLADKVYFLPLTPEYVEQVIRSERPSGVLL 189

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +        + I +   + D+    + V+     V    +
Sbjct: 190 TFGGQTALNCGVELEKAGIFKKYGCKILGTPIQSIIETEDRKIFAEKVNEIGEQVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 250 VYSVIDALIAAEQIGYPVMARAAFSLGGLGSGFANNAEQLKK--LATQALAHSNQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRST 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AIKVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WMVEDAS 297
            +   AS
Sbjct: 423 KLALGAS 429


>gi|254282306|ref|ZP_04957274.1| methylcrotonyl-CoA carboxylase, alpha subunit [gamma
           proteobacterium NOR51-B]
 gi|219678509|gb|EED34858.1| methylcrotonyl-CoA carboxylase, alpha subunit [gamma
           proteobacterium NOR51-B]
          Length = 674

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 41/146 (28%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K + GG   G+  +         L  +           +  V+       
Sbjct: 152 ADDIGYPVLLKAVAGGGGKGMRQVWSSGEFDEALAAARREAMNGFGNDDMLVEKYLTQPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                     ++          PA    + +   +   A  A +AI 
Sbjct: 212 HVEIQVFFDGHDNGVYLFERDCSVQRRHQKVIEEAPAPGMTEALRAAMGEAALRAARAIN 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 272 YEGAGTVEFLLD-NDGSFYFMEMNTR 296


>gi|254488270|ref|ZP_05101475.1| RimK-like ATP-grasp domain family protein [Roseobacter sp. GAI101]
 gi|214045139|gb|EEB85777.1| RimK-like ATP-grasp domain family protein [Roseobacter sp. GAI101]
          Length = 681

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/178 (12%), Positives = 52/178 (29%), Gaps = 21/178 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ +   D+        S +           +++        +   
Sbjct: 153 YPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            L  +             ++  +       P+    +  ++     A    QA+G     
Sbjct: 213 VLCDSHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQAVALAQAVGYTSAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
             +F+ D   R  ++LE+N +              +       G    +L+  M+  A
Sbjct: 273 TVEFIVDG-DRNFYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIRVA 316


>gi|183597987|ref|ZP_02959480.1| hypothetical protein PROSTU_01338 [Providencia stuartii ATCC 25827]
 gi|188022761|gb|EDU60801.1| hypothetical protein PROSTU_01338 [Providencia stuartii ATCC 25827]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 55/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V++ ++ +   +  + +     +N+    + +   +  
Sbjct: 149 AQRIGYPVIIKASGGGGGRGMRVVRNEKDLESSINLTRAEAKAAFNNDMVYMEKYLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   VM D   +   +A           +             I  ++ + +      A 
Sbjct: 209 HVEIQVMADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGITPEVRRNIGERCANAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FL+   + + +++E+N +
Sbjct: 265 IEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|169796337|ref|YP_001714130.1| putative biotin carboxylase [Acinetobacter baumannii AYE]
 gi|213156927|ref|YP_002318972.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii AB0057]
 gi|215483798|ref|YP_002326023.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB307-0294]
 gi|301511206|ref|ZP_07236443.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB058]
 gi|301595042|ref|ZP_07240050.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB059]
 gi|332852007|ref|ZP_08433874.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332871760|ref|ZP_08440200.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
 gi|169149264|emb|CAM87147.1| conserved hypothetical protein; putative Biotin carboxylase
           [Acinetobacter baumannii AYE]
 gi|213056087|gb|ACJ40989.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           baumannii AB0057]
 gi|213987062|gb|ACJ57361.1| methylcrotonoyl-Coenzyme A carboxylase 1 (alpha) [Acinetobacter
           baumannii AB307-0294]
 gi|332729584|gb|EGJ60922.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013150]
 gi|332731230|gb|EGJ62528.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Acinetobacter baumannii 6013113]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|156303227|ref|XP_001617488.1| hypothetical protein NEMVEDRAFT_v1g69081 [Nematostella vectensis]
 gi|156194143|gb|EDO25388.1| predicted protein [Nematostella vectensis]
          Length = 356

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 74/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E   I +  +         DK  +K  + + GVP  P     I   
Sbjct: 50  YGFLSENAKFSKICEEHGIKFIGASPEMIDRMGDKANAKSTMIAAGVPCVPGSEGVIETF 109

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                       P ++K   GG   G+  + K +++      +       + + D  + +
Sbjct: 110 EECEKIAKATGYPVMLKASAGGGGKGMRGVFKPENLKDAWDSARQESKAAFGNDDMYMEK 169

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++GD++     ++           +     +       +  ++ +++ +
Sbjct: 170 LIEEPRHIEIQIVGDSTGRACHLSERDCSIQ----RRHQKLTEETPSPFMTDELREKMGK 225

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + I   G    +FL D      +++E+N +
Sbjct: 226 AAVKAAEYIKYEGAGTIEFLVDKHRN-FYFMEMNTR 260


>gi|298207058|ref|YP_003715237.1| acetyl-CoA carboxylase, biotin carboxylase [Croceibacter atlanticus
           HTCC2559]
 gi|83849692|gb|EAP87560.1| acetyl-CoA carboxylase, biotin carboxylase [Croceibacter atlanticus
           HTCC2559]
          Length = 458

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 77/252 (30%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I E  +I +  +
Sbjct: 58  EAVCIGPAPSNLSYLKIPNIIAAAEITNADAIHPG-YGFLAENSKFSKICEEHDIKFIGA 116

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  ++  + + GVP  P     +            +  P ++K   GG  
Sbjct: 117 SPDMIDKMGDKASARATMQAAGVPCIPGSDGLLKDFAECKKVAKDMGYPVMLKATAGGGG 176

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + +    + +   +   +   V+GD++     ++
Sbjct: 177 KGMRAVWKPEDLEDAWDSARQEAGAAFGNDGMYMEKLIEEPRHIEIQVVGDSTGKACHLS 236

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +   + K++   A  A + I   G    +FL D  
Sbjct: 237 ERDCSVQ----RRHQKLTEETPSPFMTTALRKKMGEAAVKAAEYIKYEGAGTVEFLVDKH 292

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 293 RN-FYFMEMNTR 303


>gi|224372128|ref|YP_002606500.1| biotin carboxylase [Nautilia profundicola AmH]
 gi|223589513|gb|ACM93249.1| acetyl-CoA carboxylase, biotin carboxylase [Nautilia profundicola
           AmH]
          Length = 444

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 51/282 (18%), Positives = 90/282 (31%), Gaps = 35/282 (12%)

Query: 33  VSQIDVDRSVGLVL---------AHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
              +  +RS    L            + D  F   +G   E+     + +   I +    
Sbjct: 47  AVCVGPERSNESYLNIPAIITAAEMTQCDAIFPG-YGFLSENQTFVEVCKAHNIAFIGPS 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
           +       DK ++K+V+   GVPV P     I            I  P ++K   GG   
Sbjct: 106 LEVMETMADKSKAKEVMKKAGVPVIPGSEGAINSVEEAKKVAKEIGYPVILKAASGGGGR 165

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V++ +  I    L +SS           Y++        +    L      V     
Sbjct: 166 GMRVVEDESYIENAFLAASSEAESAFGDPTIYMEKYIEKPRHVEVQILGDKHGNVIHLGE 225

Query: 200 YSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
               L+          PA I   +  K++   A  A +AIG       +FL D  +   +
Sbjct: 226 RDCSLQRRHQKLIEESPANILDDETRKKLHETAVKAAKAIGYYSAGTIEFLVD-KNLNFY 284

Query: 259 WLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
           ++E+N +              +       G    +L+ WM+ 
Sbjct: 285 FMEMNTR----------LQVEHPVSEMVTGI---DLVEWMLR 313


>gi|223934938|ref|ZP_03626857.1| Carbamoyl-phosphate synthase L chain ATP-binding [bacterium
           Ellin514]
 gi|223896391|gb|EEF62833.1| Carbamoyl-phosphate synthase L chain ATP-binding [bacterium
           Ellin514]
          Length = 604

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/291 (11%), Positives = 95/291 (32%), Gaps = 33/291 (11%)

Query: 25  ALEDAGFKVSQI---------DVDRSVGLVLAHLKPDLAFNV-----LHGNFGEDG---- 66
           AL++ GF+   +         D D S  L    L  +   ++       G   + G    
Sbjct: 105 ALKEDGFETLMVNSNPETVSTDYDTSDKLFFEPLTLEDVLHIYEREKCWGAIAQFGGQTP 164

Query: 67  -LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ--HL 123
             +   L+   +    +   +  ++ D+     +++   +P  P+ L        +    
Sbjct: 165 LNLALALQKNGVNIIGTSPQSIEIAEDRKLFAAMLNKLNIPQPPNGLATNEAEALEASRR 224

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE------L 177
           +  P +++P        + ++  D  +   +  +   +    +L++++++         +
Sbjct: 225 LGYPVLVRPSFVLGGRAMQIVYSDSELTHYMRFAVEASPERPVLVDKFLEDAAEVDVDCI 284

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
           T           T +     +   Y   +S   +  + P  +   + + ++       + 
Sbjct: 285 TDVGHFSDPKQGTIVIGGMLEHIEYAGVHSGDAAMVLPPHSLSQKVIQTIREYTHAMARE 344

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
           +   G+    +        V+ LE+N +   T     P ++   G    +L
Sbjct: 345 LKVIGLMNVQYAV--KGDTVYVLEVNPRASRT----VPFVSKAIGVPLAKL 389


>gi|332291304|ref|YP_004429913.1| acetyl-CoA carboxylase, biotin carboxylase [Krokinobacter diaphorus
           4H-3-7-5]
 gi|332169390|gb|AEE18645.1| acetyl-CoA carboxylase, biotin carboxylase [Krokinobacter diaphorus
           4H-3-7-5]
          Length = 450

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 73/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I E  +I +  +     +   DK  +K+ + + GVP  P     I   
Sbjct: 82  YGFLSENAKFSKICEEHDIKFIGASAEMISKMGDKATAKKTMKAAGVPCVPGSDGIIKDF 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
                       P ++K   GG   G+  + K + +      +       + +    + +
Sbjct: 142 EECQKLAKETGYPVMLKATAGGGGKGMRAVWKKEDLLKAWEGARQESAAAFGNDGMYMEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++GD++     ++           +     +       +  D+ + +  
Sbjct: 202 LIEEPRHIEIQIVGDSNGKACHLSERDCSVQ----RRHQKLTEETPSPFMTDDLRERMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + I   G    +FL D      +++E+N +
Sbjct: 258 AAVKAAEYIKYEGAGTVEFLVDKHRN-FYFMEMNTR 292


>gi|313675113|ref|YP_004053109.1| pyruvate carboxylase [Marivirga tractuosa DSM 4126]
 gi|312941811|gb|ADR21001.1| pyruvate carboxylase [Marivirga tractuosa DSM 4126]
          Length = 1149

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +  H   D      +G   E+  +        I +            DK+R
Sbjct: 68  LDI-EEIIKLAKHKGVDAIHPG-YGFLSENVKLARRCREEGIIFVGPEPEVMNALGDKVR 125

Query: 96  SKQVVSSCGVPVC----PSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K +     VP+       ++     +     I  P ++K   GG   G+ V++    + 
Sbjct: 126 AKDIAIKANVPIIEDSKIDLVDTETALQEAERIGYPIMVKAAAGGGGRGMRVVQNKDQLK 185

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S S           +++        +    +      +         ++      
Sbjct: 186 TAFADSKSEAGNAFGDDTIFLEKYIDHPKHIEVQIMGDNYGNIVHLFERDCSVQRRFQKV 245

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P+     +   ++   A    + +    +   +FL D     ++++E+N +
Sbjct: 246 VEVAPSANLSQETRDKLYEYALAITREVNYNNVGTVEFLVDKEEN-IYFIEVNPR 299


>gi|260578794|ref|ZP_05846701.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           jeikeium ATCC 43734]
 gi|258603092|gb|EEW16362.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           jeikeium ATCC 43734]
          Length = 1121

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 93/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKP----------------- 51
           SG      L++ G +V+ I         D + +    +  + P                 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEFADNTYIEPISPKYIEKIFQEQQEAGHKV 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  +Q      LE   +    + I A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDRLGILEKYGVELIGADIDAIERGEDRQKFKDIVARIGGDS 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +   ++ +        + +    
Sbjct: 149 ARSRVCHNMEEVHETVAELGLPVVVRPSFTMGGLGSGLAFNEKDLERIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +   
Sbjct: 209 VLIEESILGWKEFELELMRDGKDNVVVVCSIENVDALGVHTGDSMTVAPSMTLTDREYQV 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAILREVGVDTGGCNIQFAVNPKDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331



 Score = 39.5 bits (90), Expect = 0.58,   Method: Composition-based stats.
 Identities = 25/188 (13%), Positives = 66/188 (35%), Gaps = 23/188 (12%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIE 176
            D    I  P +++P       G+ ++  D+S+   + +++   +   +L+++++D  IE
Sbjct: 718 HDVAARIGFPVLVRPSYVLGGRGMEIVYDDESLSNYIQRATEITNDHPVLVDRFLDSAIE 777

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D         +   +           ++  + P  +  +   +V++       
Sbjct: 778 IDVDALCDGEHVYLAGVMEHIEEAGIHSG---DSACAIPPMTLGAEDIDKVRKATAKLAH 834

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY------------- 283
            IG +G+    F        ++ +E N +   T     P ++   G              
Sbjct: 835 GIGVKGLMNVQFAL--KDDILYVIEANPRASRT----VPFVSKATGVQLSKAAARIMLGT 888

Query: 284 SFRELLLW 291
           S  +L+  
Sbjct: 889 SIPDLIEE 896


>gi|229591456|ref|YP_002873575.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229363322|emb|CAY50444.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 450

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++ +  +   +  +           E Y++       
Sbjct: 149 AAEIGYPVIVKAAGGGGGRGMRVVQAEADLLAAIGLTREEARLAFGNPELYIEKFLGHPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                L+          PA  I   +  +V      A + IG
Sbjct: 209 HVEIQVLCDAHGHAIWLGCRDCSLQRRHQKVLEEAPAPGIDPALIAKVGERCAEACRRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG+   +FL+     + F++E+N +
Sbjct: 269 YRGVGTFEFLY--EDGEFFFIEMNTR 292


>gi|226366342|ref|YP_002784125.1| carbamoyl phosphate synthase large subunit [Rhodococcus opacus B4]
 gi|226244832|dbj|BAH55180.1| carbamoyl-phosphate synthase large chain [Rhodococcus opacus B4]
          Length = 1122

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 96/318 (30%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L + G +VS ++ +                       V  V+A       + 
Sbjct: 29  SGTQACRVLREEGLRVSLVNSNPATIMTDPEFADATYVEPITAEFVEKVIALEAEKGHRI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q ILE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNTAVALHEQGILEKYDVELIGADFDAIQRGEDRQKFKDIVAKVGGES 148

Query: 108 CPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +        D+   +  P V++P      LG  +   D+ +        + +    
Sbjct: 149 ARSRVCYTMDEVRDTVAELGFPVVVRPSFTMGGLGSGMAYDDEDLTRIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDGRDNVVIVCSIENVDPVGVHTGDSITVAPAMTLTDREYQA 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  +  +     G     F  DP   ++  +E+N  P ++  S            +
Sbjct: 269 MRDLSIDILREVGVDTGGCNIQFAMDPADGRLVVIEMN--PRVSRSSALASKATGFPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY+  E++  +
Sbjct: 327 IAAKLAIGYTLDEIVNDI 344


>gi|158451255|gb|ABW38988.1| putative CAD trifunctional protein [Olceclostera seraphica]
          Length = 976

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALREEKIQSVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKIFEKYNVTVLGTPIQSIVDTEDRKXFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALIAAKQIGYPVMARSAFSLGGLGSGFANNEDEL--KALAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|153005851|ref|YP_001380176.1| pyruvate carboxylase [Anaeromyxobacter sp. Fw109-5]
 gi|152029424|gb|ABS27192.1| pyruvate carboxylase [Anaeromyxobacter sp. Fw109-5]
          Length = 1149

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 31/231 (13%), Positives = 70/231 (30%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +   L+ D      +G   E+       +   I +            DK+  ++ 
Sbjct: 68  EEIVALAKRLEVDAIHPG-YGFLSENPEFAEACDRAGIVFVGPTPEMQRRLGDKVAGRKA 126

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVPV P     I  +   +        P +IK   GG   G+ V +  + +   L+
Sbjct: 127 AQGAGVPVVPGTAEPIKHDEEALLFAREHGYPIIIKASAGGGGRGMRVARNQRELVEGLV 186

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++        +    L      +         ++          
Sbjct: 187 SARSEAGAAFGNPAVFLERYIERPKHIEVQVLGDHHGNLVHLFERDCSIQRRHQKVVEFA 246

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+    +     +   A    +++  R     +FL D    + +++E+N +
Sbjct: 247 PSLALSEAQRAAICEDALKIARSVSYRNAGTVEFLVDRE-GRHYFIEVNPR 296


>gi|929988|gb|AAA96256.1| pyruvate carboxylase [Rattus norvegicus]
          Length = 1178

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           +             +V+        +    L      +         ++        + P
Sbjct: 220 AYPEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|331012555|gb|EGH92611.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
          Length = 400

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 107 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 166

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 167 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 226

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 227 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 272

Query: 300 R 300
           +
Sbjct: 273 K 273


>gi|172045874|sp|Q470L8|PURT_RALEJ RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 401

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                        +  ++   KP L    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMSDPEQLKALIEAEKPQLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          ++  IP   +  L       +  + + +     P      +    
Sbjct: 84  EAIATPMLESLEAAGVVRVIPTARAARLTMDREGIRRLAAETLGLPTSPYKFCDSLEELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P V+KP+   S  G   I   + +      + +        +I +     +
Sbjct: 144 TAIDGGIGYPCVVKPVMSSSGKGQSKIDGPEGVKAAWDYAMAGGRVSHGRVIVEGFIDFD 203

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +L        +       ++ S        P  +     +  Q +A     
Sbjct: 204 YEITLLTVRALGADGKVETQFCTPIGHVQVSGDYVESWQPHPMHPAALQTAQHIARAVTS 263

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G +G+   +        +V++ E++ +P      +    
Sbjct: 264 DLGGQGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMA 300


>gi|120437667|ref|YP_863353.1| biotin carboxylase [Gramella forsetii KT0803]
 gi|117579817|emb|CAL68286.1| biotin carboxylase [Gramella forsetii KT0803]
          Length = 451

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/252 (15%), Positives = 80/252 (31%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I E  EI +  +
Sbjct: 47  EAVCIGPAPSNLSYLKISNIIAAAEITNADAIHPG-YGFLSENAKFSKICEEHEIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                A   DK  +K  + + GVP  P     I   +        +  P ++K   GG  
Sbjct: 106 SPDMIAKMGDKATAKATMRAAGVPCVPGSEGIIKDFKECQKLAKEVGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K++ +      +       + +    + +   +   +   ++GD+S     ++
Sbjct: 166 KGMRAVWKEEELEPAWESARKEADASFGNDGMYMEKLIEEPRHIEIQIVGDSSGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +   + K++   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDTLRKKMGDAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|73541489|ref|YP_296009.1| phosphoribosylglycinamide formyltransferase 2 [Ralstonia eutropha
           JMP134]
 gi|72118902|gb|AAZ61165.1| phosphoribosylglycinamide formyltransferase 2 [Ralstonia eutropha
           JMP134]
          Length = 413

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 32/281 (11%), Positives = 76/281 (27%), Gaps = 26/281 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D                        +  ++   KP L    +
Sbjct: 36  GKEVLIALQRLGVETIAVDRYDNAPGQQVAHHARTIAMSDPEQLKALIEAEKPQLVVPEI 95

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                          ++  IP   +  L       +  + + +     P      +    
Sbjct: 96  EAIATPMLESLEAAGVVRVIPTARAARLTMDREGIRRLAAETLGLPTSPYKFCDSLEELQ 155

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIE 176
                 I  P V+KP+   S  G   I   + +      + +        +I +     +
Sbjct: 156 TAIDGGIGYPCVVKPVMSSSGKGQSKIDGPEGVKAAWDYAMAGGRVSHGRVIVEGFIDFD 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   +L        +       ++ S        P  +     +  Q +A     
Sbjct: 216 YEITLLTVRALGADGKVETQFCTPIGHVQVSGDYVESWQPHPMHPAALQTAQHIARAVTS 275

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
            +G +G+   +        +V++ E++ +P      +    
Sbjct: 276 DLGGQGLFGVELFV--KGEQVWFSEVSPRP--HDTGMVTMA 312


>gi|325962779|ref|YP_004240685.1| acetyl/propionyl-CoA carboxylase, subunit alpha [Arthrobacter
           phenanthrenivorans Sphe3]
 gi|323468866|gb|ADX72551.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Arthrobacter
           phenanthrenivorans Sphe3]
          Length = 745

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 48/257 (18%), Positives = 86/257 (33%), Gaps = 32/257 (12%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPY 79
           +A   A   AG +                          +G   E+      L+   I +
Sbjct: 79  EAIIDACRKAGVEAVHPG---------------------YGFLSENADFARALDQAGITF 117

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKG 135
              GI A  +  DK+RSK  V+  GVPV P +     T +        +  P +IKP  G
Sbjct: 118 IGPGIDALDVMGDKIRSKNHVAGYGVPVVPGVAEPGMTDEQLVAAAAAVGFPLLIKPSAG 177

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           G   G+ V+++   +P  L  +       +      L         +   V+ D   +V 
Sbjct: 178 GGGKGMHVVERAADLPATLATARRVAASAFGDDTLFLERLVSTPRHIEVQVLADHHGNVI 237

Query: 191 EIAVP-KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +     S    ++       S  +        I   +   A  A +++   G    +FL
Sbjct: 238 HLGERECSLQRRHQKVIEEAPSPLLESHPEGAAIRARIGEAACNAARSVNYSGAGTVEFL 297

Query: 250 F-DPLSRKVFWLEINVQ 265
             D    + +++E+N +
Sbjct: 298 VSDDSPDEFYFMEMNTR 314


>gi|270262253|ref|ZP_06190525.1| phosphoribosylglycinamide formyltransferase 2 [Serratia odorifera
           4Rx13]
 gi|270044129|gb|EFA17221.1| phosphoribosylglycinamide formyltransferase 2 [Serratia odorifera
           4Rx13]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D + +  ++   +PD     +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGNALKALIEQERPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATSMLVELEQQGHRVVPCAEATRLTMNREGIRRLAAETLGLPT-SSYRFADGEEAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G  +I+  + +        +   G        V+G+   
Sbjct: 143 QAVAEIGYPCIIKPVMSSSGKGQSLIRSPEQLKTA--WDYAQQGGRAGGGRVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++        Q +A    QA+
Sbjct: 201 DFEITLLTISAIDGVHFCAPIGHRQEDG--DYRESWQPQRMSELALNRAQEIAQNVVQAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|148683788|gb|EDL15735.1| acetyl-Coenzyme A carboxylase alpha [Mus musculus]
          Length = 2379

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 264 LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 323

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 324 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 380

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 381 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 438

Query: 264 VQ 265
            +
Sbjct: 439 PR 440


>gi|125656173|ref|NP_579938.2| acetyl-CoA carboxylase 1 [Mus musculus]
 gi|81862571|sp|Q5SWU9|ACACA_MOUSE RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; AltName:
           Full=ACC-alpha; AltName: Full=Acetyl-CoA carboxylase
           265; Includes: RecName: Full=Biotin carboxylase
 gi|56205556|emb|CAI24019.1| acetyl-Coenzyme A carboxylase alpha [Mus musculus]
 gi|56205878|emb|CAI25271.1| acetyl-Coenzyme A carboxylase alpha [Mus musculus]
 gi|225356498|gb|AAI56145.1| Acetyl-Coenzyme A carboxylase alpha [synthetic construct]
 gi|225356500|gb|AAI56983.1| Acetyl-Coenzyme A carboxylase alpha [synthetic construct]
          Length = 2345

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 264 LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 323

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 324 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 380

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 381 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 438

Query: 264 VQ 265
            +
Sbjct: 439 PR 440


>gi|42405896|gb|AAS13685.1| acetyl-CoA carboxylase 1 [Mus musculus]
          Length = 2345

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 264 LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 323

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 324 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 380

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 381 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 438

Query: 264 VQ 265
            +
Sbjct: 439 PR 440


>gi|118579814|ref|YP_901064.1| phosphoribosylglycinamide formyltransferase 2 [Pelobacter
           propionicus DSM 2379]
 gi|171704479|sp|A1ANT6|PURT_PELPD RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|118502524|gb|ABK99006.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Pelobacter propionicus DSM 2379]
          Length = 394

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 77/307 (25%), Gaps = 40/307 (13%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                        +  V+   +PDL    +
Sbjct: 23  GKEVAIEAQRLGVEVIAVDRYADAPAMQVAHRSHVISMQDREELKRVIGLERPDLIVPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E  L         IP   +  L       +  + + +                  
Sbjct: 83  EAIDTEFLLELEQGGQRVIPTARATNLTMNREGIRRLAAEELGLPT-ARYAFAASLEEMR 141

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P VIKP+   S  G  V++    +      +     G    +          
Sbjct: 142 GHVAQIGCPCVIKPIMSSSGKGQSVLRDPSQVDEAWRYAMEGARGASDTVIIEEFIQFDY 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +            P         +          P  +      E +R A     A+
Sbjct: 202 EITLLTVRHCNGTSFCPPIGHV----QIKGDYHESWQPMAMSPAALAEARRQAEAVTTAL 257

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL---------L 289
           G  G+   +      + +V + E++ +P      +   ++     S  EL         +
Sbjct: 258 GGYGLFGVELFI--SNDRVLFSEVSPRP--HDTGMVTMISQ--NLSQFELHVRAILGLPV 311

Query: 290 LWMVEDA 296
             +V  A
Sbjct: 312 GEIVNLA 318


>gi|258544515|ref|ZP_05704749.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cardiobacterium
           hominis ATCC 15826]
 gi|258520250|gb|EEV89109.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Cardiobacterium
           hominis ATCC 15826]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/222 (12%), Positives = 69/222 (31%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +         +  DK+ + + + + G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFTFIGPRAETIRMMGDKVEAIKAMKAAGIPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHG 163
                      +   I  P +IK   GG   G+ V++    +   +         ++ + 
Sbjct: 137 PLSTDPDEIRATAERIGYPVIIKAAGGGGGRGMRVVRSADEVVDAVRLTKTEARQAFGND 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +       +   V+ D   +   +            +             I  + 
Sbjct: 197 MVYMEKFLETPRHIEIQVLSDKHGNAIHLGERDCSLQ----RRHQKVMEEAPAPGISEEQ 252

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +  +   A + IG  G    +FL+   + + +++E+N +
Sbjct: 253 RNAIGAVCVEACKRIGYHGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|187234507|gb|ACD01492.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Hemaris diffinis]
          Length = 975

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + + S    V    +
Sbjct: 435 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKICSIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 495 VMSVDEALXAAAQIGYPVMARSAFSLGGMGSGFANNEEELKS--LAHQALSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|126436212|ref|YP_001071903.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. JLS]
 gi|126236012|gb|ABN99412.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. JLS]
          Length = 662

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP  GG   G+ V+     +P  L+ +             +++   L    +   
Sbjct: 154 FPVLVKPSAGGGGKGMRVVHDPAELPAALVSARREAAAAFGDDTLFLERFVLNPRHIEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
            L      V         L+          P+ +  +     +   A    +++   G  
Sbjct: 214 VLADGFGNVIHLGERECSLQRRHQKVIEEAPSPLLDEATRARIGAAACDTARSVDYAGAG 273

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+       + F++E+N +
Sbjct: 274 TVEFIVSADRPDEFFFMEMNTR 295


>gi|108800596|ref|YP_640793.1| carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119869735|ref|YP_939687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Mycobacterium
           sp. KMS]
 gi|108771015|gb|ABG09737.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. MCS]
 gi|119695824|gb|ABL92897.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium sp. KMS]
          Length = 662

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/142 (14%), Positives = 46/142 (32%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP  GG   G+ V+     +P  L+ +             +++   L    +   
Sbjct: 154 FPVLVKPSAGGGGKGMRVVHDPAELPAALVSARREAAAAFGDDTLFLERFVLNPRHIEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
            L      V         L+          P+ +  +     +   A    +++   G  
Sbjct: 214 VLADGFGNVIHLGERECSLQRRHQKVIEEAPSPLLDEATRARIGAAACDTARSVDYAGAG 273

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+       + F++E+N +
Sbjct: 274 TVEFIVSADRPDEFFFMEMNTR 295


>gi|11559962|ref|NP_071529.1| acetyl-CoA carboxylase 1 [Rattus norvegicus]
 gi|116670|sp|P11497|ACACA_RAT RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; AltName:
           Full=ACC-alpha; Includes: RecName: Full=Biotin
           carboxylase
 gi|202645|gb|AAA40653.1| acetyl-coenzyme A carboxylase (EC 6.4.1.2) [Rattus norvegicus]
 gi|119351059|gb|ABL63425.1| acetyl-coenzyme A carboxylase alpha [Rattus norvegicus]
 gi|119351061|gb|ABL63426.1| acetyl-coenzyme A carboxylase alpha [Rattus norvegicus]
          Length = 2345

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 264 LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 323

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 324 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 380

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 381 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 438

Query: 264 VQ 265
            +
Sbjct: 439 PR 440


>gi|253565447|ref|ZP_04842902.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_2_5]
 gi|251945726|gb|EES86133.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_2_5]
          Length = 388

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  ++   +PD+    +      + L     E +++  +   +  +  
Sbjct: 44  ECEVFDMLNGEELERIVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNYTMN 102

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                        ++   I  P V+KPL   S  G  ++K    
Sbjct: 103 RKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEKIGFPCVVKPLMSSSGKGQSLVKSAAE 162

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        + + GD  +L+IE+++        +        T    P            
Sbjct: 163 LEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 222

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F     +  V++ E++ +P 
Sbjct: 223 SFQPAHIDPAHLKEAEDM-----AEKVTRALTGAGLWGVEFFLSHENG-VYFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|238912058|ref|ZP_04655895.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Tennessee str. CDC07-0191]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEDEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|207856596|ref|YP_002243247.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
 gi|206708399|emb|CAR32703.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Enteritidis str. P125109]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEDEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|71736401|ref|YP_276560.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. phaseolicola 1448A]
 gi|257483336|ref|ZP_05637377.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tabaci ATCC 11528]
 gi|289625302|ref|ZP_06458256.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. NCPPB3681]
 gi|289647827|ref|ZP_06479170.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 2250]
 gi|298488949|ref|ZP_07006972.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|71556954|gb|AAZ36165.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. phaseolicola 1448A]
 gi|298156447|gb|EFH97544.1| Biotin carboxylase of acetyl-CoA carboxylase [Pseudomonas
           savastanoi pv. savastanoi NCPPB 3335]
 gi|320322740|gb|EFW78833.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. B076]
 gi|320330475|gb|EFW86454.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330867136|gb|EGH01845.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330871024|gb|EGH05733.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
 gi|330873872|gb|EGH08021.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. glycinea str. race 4]
 gi|330960005|gb|EGH60265.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
 gi|330989166|gb|EGH87269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M301315]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|62180458|ref|YP_216875.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224583614|ref|YP_002637412.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|81309671|sp|Q57NB7|PURT_SALCH RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788783|sp|C0Q2G8|PURT_SALPC RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|62128091|gb|AAX65794.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. SC-B67]
 gi|224468141|gb|ACN45971.1| 5'-phosphoribosylglycinamide transformylase [Salmonella enterica
           subsp. enterica serovar Paratyphi C strain RKS4594]
 gi|322714933|gb|EFZ06504.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Choleraesuis str. A50]
          Length = 392

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEDEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|60681705|ref|YP_211849.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           NCTC 9343]
 gi|265763726|ref|ZP_06092294.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_16]
 gi|81315230|sp|Q5LD90|PURT_BACFN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|60493139|emb|CAH07920.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           NCTC 9343]
 gi|263256334|gb|EEZ27680.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           2_1_16]
 gi|301163248|emb|CBW22798.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           638R]
          Length = 388

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 75/244 (30%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  ++   +PD+    +      + L     E +++  +   +  +  
Sbjct: 44  ECEVFDMLNGEELERIVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNYTMN 102

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                        ++   I  P V+KPL   S  G  ++K    
Sbjct: 103 RKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEKIGFPCVVKPLMSSSGKGQSLVKSAAE 162

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        + + GD  +L+IE+++        +        T    P            
Sbjct: 163 LEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 222

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F     +  V++ E++ +P 
Sbjct: 223 SFQPAHIDPAHLKEAEDM-----AEKVTRALTGAGLWGVEFFLSHENG-VYFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|27467681|ref|NP_764318.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis ATCC 12228]
 gi|251810518|ref|ZP_04824991.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|282876577|ref|ZP_06285442.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis SK135]
 gi|81842942|sp|Q8CPP2|PURK_STAES RecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase;
           Short=N5-CAIR synthase; AltName:
           Full=5-(carboxyamino)imidazole ribonucleotide synthetase
 gi|27315225|gb|AAO04360.1|AE016746_150 phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis ATCC 12228]
 gi|251805929|gb|EES58586.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis BCM-HMP0060]
 gi|281294665|gb|EFA87194.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis SK135]
 gi|329732839|gb|EGG69185.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis VCU144]
 gi|329734201|gb|EGG70517.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis VCU028]
 gi|329735536|gb|EGG71824.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis VCU045]
          Length = 375

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 28/264 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNFGEDGLVQAI 71
           GK  A + +  G+KV  +D +       V     H   D   A N L  N          
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDDEQALNQLGENSDVVTYEFEN 80

Query: 72  L------ELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL 123
           +      +L ++ +   G  A  L  D++  KQ    ++  +     I  N+  + +   
Sbjct: 81  ISSEQLKKLTQLYHIPQGYQAIELLQDRLTEKQTLLEANTQIVPFVQIQTNQDLLKAIEK 140

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +  P+++K   GG      + ++ D  +              +  ++   +         
Sbjct: 141 LGFPFIVKTRFGGYDGKGQILVRNDSELDEAYQLVEKQECVAEQYLDIQKEVSLTVTIGN 200

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +           +   ++                  D   E ++      +AI   G
Sbjct: 201 EQQTTYFPLQENEHQNQILFKTVV-----------PARSDKENEARKEVEKITRAIHFVG 249

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               +F  D  +  ++  EI  +P
Sbjct: 250 TFTVEFFIDKENN-LYVNEIAPRP 272


>gi|255722581|ref|XP_002546225.1| acetyl-CoA carboxylase [Candida tropicalis MYA-3404]
 gi|240136714|gb|EER36267.1| acetyl-CoA carboxylase [Candida tropicalis MYA-3404]
          Length = 2274

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P ++K  +GG   GI  +  ++       Q+++   G  + I +   D   L  
Sbjct: 286 AKKIGFPVMVKASEGGGGKGIRKVDNEKDFISLYNQAANEIPGSPIFIMKLAGDARHLEV 345

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            +  D       +            +                + + E+++ A    + +G
Sbjct: 346 QLFADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIANKETFTEMEKAAVRLGKLVG 401

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 402 YVSAGTVEYLYSYAEDKFYFLELNPR 427


>gi|229588166|ref|YP_002870285.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           fluorescens SBW25]
 gi|229360032|emb|CAY46886.1| biotin carboxylase [Pseudomonas fluorescens SBW25]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 47/141 (33%), Gaps = 3/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ K++ +     Q+ S           Y++        +   
Sbjct: 159 YPVIIKAAGGGGGRGMRVVHKEEDLIEAAKQTRSEAGAWFGNPMVYLEKYLTNPRHVEVQ 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            L   +            L+          PA    +  ++        A   I  RG  
Sbjct: 219 VLSDGQGHAIHLGDRDCSLQRRHQKVLEEAPAPGLDEKARQEVLARCVKACIDINYRGAG 278

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL+   + + +++E+N +
Sbjct: 279 TFEFLY--ENGRFYFIEMNTR 297


>gi|306826792|ref|ZP_07460094.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pyogenes
           ATCC 10782]
 gi|304431081|gb|EFM34088.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus pyogenes
           ATCC 10782]
          Length = 468

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 91  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 150

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 151 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 210

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +         +  K    + +  +   +  ++ 
Sbjct: 211 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVLEESPSIAIGNTLRHEMG 270

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 271 QAAVRAAKAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 307


>gi|281204804|gb|EFA78999.1| acetyl-CoA carboxylase [Polysphondylium pallidum PN500]
          Length = 2253

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 26/147 (17%), Positives = 52/147 (35%), Gaps = 8/147 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELT 178
               +  P +IK  +GG   GI  +   + +P    Q  S   G  +   + V     L 
Sbjct: 198 CAERVGFPAMIKASEGGGGKGIRKVTTMEELPACFRQVQSEVPGSPIFFMKLVPNARHLE 257

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++GD   +   +            +                +++ E++R A    + +
Sbjct: 258 VQIIGDQYGEAISLNGRDCSVQ----RRHQKIIEEGPALAPRPEVWLEMERAAVRLVKEV 313

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    ++LFD      ++LE+N +
Sbjct: 314 GYVGAGTVEYLFD---GDYYFLELNPR 337


>gi|260554167|ref|ZP_05826426.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Acinetobacter sp.
           RUH2624]
 gi|260404709|gb|EEW98220.1| methylcrotonoyl-Coenzyme A carboxylase 1 [Acinetobacter sp.
           RUH2624]
          Length = 663

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 52/152 (34%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +  + +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLEAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVNYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|224417769|ref|ZP_03655775.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253827112|ref|ZP_04869997.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313141310|ref|ZP_07803503.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|253510518|gb|EES89177.1| acetyl-CoA carboxylase [Helicobacter canadensis MIT 98-5491]
 gi|313130341|gb|EFR47958.1| biotin carboxylase [Helicobacter canadensis MIT 98-5491]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 27/259 (10%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D  F   +G   E+     I     I +        AL  DK ++K+V+ + GVPV 
Sbjct: 78  FNADAIFPG-YGFLSENQNFVEICNYHNIEFIGPNPEVMALMSDKSKAKEVMKNAGVPVI 136

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWN 161
           P     +      ++    I  P ++K   GG   G+ +    +   +  L     +   
Sbjct: 137 PGSDGAVKSKEEALELAKEIGYPVILKAAAGGGGRGMRIVQNEENMFNAYLAAESEAISA 196

Query: 162 HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
            GD  +  +          V   A        +   +      +             +  
Sbjct: 197 FGDGTIYMEKFIDKPKHIEVQILADKYG--NVLHVGERDCSLQRRHQKLIEESPAPTLEA 254

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY- 280
           +  K++   A  A +AI   G    +FL D  ++  +++E+N +              + 
Sbjct: 255 ETRKKLLETAITATKAIKYVGAGTYEFLLD-NNQNFYFMEMNTR----------LQVEHP 303

Query: 281 -----AGYSFRELLLWMVE 294
                +G    EL++ + E
Sbjct: 304 VSELVSGLDIIELMIQIAE 322


>gi|149053691|gb|EDM05508.1| acetyl-coenzyme A carboxylase alpha, isoform CRA_a [Rattus
           norvegicus]
 gi|149053693|gb|EDM05510.1| acetyl-coenzyme A carboxylase alpha, isoform CRA_a [Rattus
           norvegicus]
          Length = 2123

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 88  LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 147

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 148 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 204

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 205 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 262

Query: 264 VQ 265
            +
Sbjct: 263 PR 264


>gi|89055861|ref|YP_511312.1| carbamoyl-phosphate synthase L chain, ATP-binding [Jannaschia sp.
           CCS1]
 gi|88865410|gb|ABD56287.1| biotin carboxyl carrier protein / biotin carboxylase [Jannaschia
           sp. CCS1]
          Length = 680

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 80/273 (29%), Gaps = 27/273 (9%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      LE   + +      A     DK+ 
Sbjct: 61  IVIDK-IMQAIRDTGADAVHPG-YGFLSENMKFAEALEAEGVAFIGPPAGAIEKMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++    GV   P  +               I  P ++K   GG   G+ +   +  + 
Sbjct: 119 SKKIAQDAGVSTVPGHMGLIEDAAEAIRISGEIGYPVMLKASAGGGGKGMRIAWSEDEVA 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 179 EGFQASKNEAASSFGDDRMFIEKFVTQPRHIEIQVLADQHGNAIYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
               P+    +  ++     A    QA+G       +F+ D   R  ++LE+N +     
Sbjct: 239 IEEAPSPFLDEATRKAMGEQAVSLVQAVGYTSAGTVEFIVDG-DRNFYFLEMNTR----- 292

Query: 271 VSIFPEMAAY------AGYSFRELLLWMVEDAS 297
                    +       G    +L+  M+  A+
Sbjct: 293 -----LQVEHPVTELITGV---DLVEQMIRVAA 317


>gi|50903900|gb|AAT87615.1| Biotin carboxylase [Streptococcus pyogenes MGAS10394]
 gi|94542626|gb|ABF32675.1| biotin carboxylase [Streptococcus pyogenes MGAS9429]
 gi|94546518|gb|ABF36565.1| Biotin carboxylase [Streptococcus pyogenes MGAS2096]
          Length = 470

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +         +  K    + +  +   +  ++ 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVLEESPSIAIGNTLRHEMG 272

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 273 QAAVRAAKAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 309


>gi|253999101|ref|YP_003051164.1| pyruvate carboxylase subunit A [Methylovorus sp. SIP3-4]
 gi|253985780|gb|ACT50637.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp.
           SIP3-4]
          Length = 472

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 85/277 (30%), Gaps = 35/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G K   I  D      L   K D A+N                         
Sbjct: 17  IVRACSEMGIKSVAIYSDAD-RHALHVKKADEAYNIGSDPVVGYLNAHNIVNLAVASGCD 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+  +  I     I +            DK++++  +   G+P  P    
Sbjct: 76  ALHPGYGFLSENPELAEICARRGIKFIGPDAKVIRQMGDKIQARNAMIKAGIPCVPGSNG 135

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           N             I  P ++K   GG   GI     ++ +  +  +  S         E
Sbjct: 136 NLADLEEARTLARKIGYPVMLKATNGGGGRGIRRCNDEKELLSNYDRVISEASKAFGKPE 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++   +    +    +  +   V         ++  +     + P+        + + 
Sbjct: 196 VFLEKCVVNPKHIEVQIMADSHGNVIHLFERDCSIQRRNQKLIEIAPSPQLSNAQREYIG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +LA  A +A+G +     +FL D      +++E+N +
Sbjct: 256 KLAVKAAKAVGYKNAGTVEFLLD-SDNSFYFMEMNTR 291


>gi|254468435|ref|ZP_05081841.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
 gi|207087245|gb|EDZ64528.1| acetyl-CoA carboxylase, biotin carboxylase [beta proteobacterium
           KB13]
          Length = 472

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P ++K   GG   GI     D+ +  +  +  S         E +++   ++  
Sbjct: 147 ANQIGYPVMLKATNGGGGRGIRRCDNDKELVSNYDRVISEATKAFGNPELFMEKCVVSPK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++  +     + P+     +    +  LA  A +A+ 
Sbjct: 207 HIEVQILADSHGNAIHLYERDCSIQRRNQKLIEIAPSPQLSNEQRDYIGSLAVKAAKAVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      +++E+N +
Sbjct: 267 YENAGTVEFLLDQDDN-FYFMEMNTR 291


>gi|194245502|gb|ACF35360.1| carbamoylphosphate synthetase [Macrogyrus oblongus]
          Length = 856

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 70  SGSQAIKAMKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIKAERPNGVLL 129

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     + E   +    + I A   + D+    + ++     V    +
Sbjct: 130 TFGGQTALNCGVDLQRAGVFEKYGVKILGTPIEAIIDTEDRKIFSERIAEIGEKVAPSCA 189

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 190 VYSVQEAVEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKS--LALQALAHSSQLIIDK 247

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G           + D         +     +                 + Y  ++  
Sbjct: 248 SLKGXXXXXXXXVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNRE-YNMLRTT 306

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 307 ALNVIRHFGVIGECNIQYALNPFSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 362

Query: 291 WM 292
            +
Sbjct: 363 KL 364


>gi|158451303|gb|ABW39012.1| putative CAD trifunctional protein [Rolepa sp. JCR-2007]
          Length = 731

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKAMREEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   +    + I +   + D+    + + S    V    +
Sbjct: 191 TFGGQTALNCGVELQKSKIFDKYNVTVLGTPIQSIVDTEDRKIFAEKIYSIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +   LL   + +H DQL+I++
Sbjct: 251 VTSVEEAVAAALQIGYPVMARSAFSLGGLGSGFANNEEELR--LLAHQALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|119190005|ref|XP_001245609.1| hypothetical protein CIMG_05050 [Coccidioides immitis RS]
          Length = 687

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 50/147 (34%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +IK + GG   GI +++ + ++   + ++   +   ++ +E+         
Sbjct: 169 FAAEVGYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAA---VEGY 225

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
             +    +      V         ++          PA      +   V   A      I
Sbjct: 226 HHVEVQVIGDGTGQVRHLWERDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRI 285

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL +  + + ++LEIN +
Sbjct: 286 KYLSLGTFEFLVNEQASEFYFLEINPR 312


>gi|315609092|ref|ZP_07884061.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           ATCC 33574]
 gi|315249162|gb|EFU29182.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           ATCC 33574]
          Length = 393

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 81/275 (29%), Gaps = 32/275 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    A +  G  V   D                       ++  V+   +PD+    +
Sbjct: 13  GKELVIAAKRKGLYVVACDRYDNAPAMQVADEREVFSMLDGDALEAVVRKHRPDIIVPEI 72

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  +P   +          +  + + +                  
Sbjct: 73  EAIRTERLFDFEKAGIQVVPSARAVNYTMNRRAIRDLAAKELGLRT-AKYFYAKTFDEFR 131

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE 176
            +   I  P V+KPL   S  G   +  D  +      +   + GD  +++IE+++D   
Sbjct: 132 KAADEIGFPCVVKPLMSSSGHGQSYVHSDGELEQAFRDAMEGSRGDVKEIIIEEFIDFDS 191

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T    P         +          P ++P +  K  + +A    +
Sbjct: 192 EFTLLTVTQKQGPTLFCPPIGHI-----QKGGDYRESWQPFRLPDEALKAAEDMARKVTE 246

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A+   G+   +F       +V + E++ +P   GM
Sbjct: 247 ALTGCGLWGVEFFLSRQ-GEVIFSELSPRPHDTGM 280


>gi|295698247|ref|YP_003602902.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Riesia
           pediculicola USDA]
 gi|295698252|ref|YP_003602907.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Riesia
           pediculicola USDA]
 gi|291157114|gb|ADD79559.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Riesia
           pediculicola USDA]
 gi|291157342|gb|ADD79787.1| acetyl-CoA carboxylase, biotin carboxylase [Candidatus Riesia
           pediculicola USDA]
          Length = 436

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/158 (13%), Positives = 54/158 (34%), Gaps = 11/158 (6%)

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLL 167
             +        I  P VIKP  GG  L I V++ +  +   +          + + +  +
Sbjct: 141 NFQNNKKIAERIGYPIVIKPSLGGGGLAINVVQDENELQKKILLTKKESKILFQNDEVYM 200

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +   +   +   V+ D   +V  ++           K         +   +   + K  
Sbjct: 201 EKFLNNPRHIEVQVISDGKGNVICLSERDCSIQRRNQKIIEEAPVKNIKESLLRKVRKLC 260

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++       +   G+   +FL+   +  ++++E+N +
Sbjct: 261 VQVCIE----LNYCGVGTFEFLY--KNESMYFIEVNTR 292


>gi|149202217|ref|ZP_01879190.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. TM1035]
 gi|149144315|gb|EDM32346.1| propionyl-CoA carboxylase, alpha subunit [Roseovarius sp. TM1035]
          Length = 666

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 25/182 (13%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P +IK   GG   G+ +   D+        S +           +++        
Sbjct: 149 NQIGYPVMIKASAGGGGKGMRIAWNDEEAREGFQSSKNEAASSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L  T             ++  +       P+    +  +      A    QA+G 
Sbjct: 209 IEIQVLCDTHGNGIYLGERECSIQRRNQKVIEEAPSPFLDEATRRAMGEQAVALAQAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 ASAGTVEFIVDGQRN-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|30022266|ref|NP_833897.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus cereus
           ATCC 14579]
 gi|29897823|gb|AAP11098.1| Biotin carboxylase [Bacillus cereus ATCC 14579]
          Length = 440

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 50/145 (34%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 139 ANQIGYPVIIKATAGGGGKGIRVARHEEELIKGIQITQQEASTAFGNPGVYLEKYVEDFR 198

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    +  T             ++             +  DI K++   A  A  A+  
Sbjct: 199 HVEIQIMADTHGNAIHLGERDCTIQRRFKTIEESPSPALDEDIRKQMGEAAVKAAVAVDY 258

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
            G    +F+++  ++  +++E+N +
Sbjct: 259 TGAGTVEFIYEYKTKTFYFMEMNTR 283


>gi|89099250|ref|ZP_01172128.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
 gi|89086096|gb|EAR65219.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 AEKIDYPVIIKATAGGGGKGIRVARTEEELVKGINITQQEALTAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+     +I +E+   A  A +A+ 
Sbjct: 208 HVEIQVLADNYGNTLHLGERDCSIQRRLQKLLEETPSPALDGEIREEMGAAAVKAAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D  +RK +++E+N +
Sbjct: 268 YTGAGTVEFIYDYQNRKFYFMEMNTR 293


>gi|222823597|ref|YP_002575171.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
 gi|222538819|gb|ACM63920.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter lari
           RM2100]
          Length = 480

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 79/252 (31%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVD--------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
           +  +I  D        + +  +      D      +G   E+       E   I +    
Sbjct: 47  EAYRIGTDAIRGYLDGKRIVEIAKACGADAIHPG-YGFLSENYEFAKECEEAGIIFIGPK 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS-----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                   +K  ++ ++   G+PV P                   I  P ++K   GG  
Sbjct: 106 SDVIRKMGNKNIARYLMKKNGIPVVPGTEKLNHCTLEEIKLQALKIGYPVILKASGGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            GI V+ K++ +              + + +  + +  ++   +   ++ D   ++  + 
Sbjct: 166 RGIRVVHKEEDLEKSFEACKREALSFFKNDEVFMEKYVINPRHIEFQILADNYGNIIHLC 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +             I   + K +   A  A +A+G   +   +FL D  
Sbjct: 226 ERDCSIQ----RRHQKIIEIAPCPSISEKLRKTIGVTAVAAAKAVGYTNVGTVEFLLDDY 281

Query: 254 SRKVFWLEINVQ 265
             + +++E+N +
Sbjct: 282 -NRFYFMEMNTR 292


>gi|330953063|gb|EGH53323.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae Cit 7]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +E    A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEKAREDVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|302851575|ref|XP_002957311.1| hypothetical protein VOLCADRAFT_98356 [Volvox carteri f.
           nagariensis]
 gi|300257406|gb|EFJ41655.1| hypothetical protein VOLCADRAFT_98356 [Volvox carteri f.
           nagariensis]
          Length = 1247

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 46/148 (31%), Gaps = 1/148 (0%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P ++K   GG  +GI + + D  +      S             +V+     
Sbjct: 157 HEAQKVGYPVLLKATGGGGGMGIFLCRNDADVARQFEMSRHQGQAFFGNAGVFVEKYIEK 216

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
              +        E            ++          P+  +   + +++   A     A
Sbjct: 217 AHHVEVQIFGDGEGGCIHLGERECSIQRRHQKVLEETPSPLVDSTLRQQLTSAAVALGAA 276

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              R     +FL D  SR+ ++LE+N +
Sbjct: 277 SAYRSAGTVEFLVDEESRQFYFLEVNTR 304


>gi|294506946|ref|YP_003571004.1| Acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber M8]
 gi|294343274|emb|CBH24052.1| Acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber M8]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 86/267 (32%), Gaps = 26/267 (9%)

Query: 21  ACASALEDA----GF--KVSQIDVDRSVGLVLAHLKPDLAF--------NVLH---GNFG 63
           A  S ++       F  +   I    S    L   +PD           + +H   G   
Sbjct: 32  AVYSTIDRDALHVRFADEAVCIGPAASGESYL---RPDRLIAAAEVTGADAIHPGYGFLA 88

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMD 119
           E+     I    +I +        +L  +K ++K+ +   GVP+       +       +
Sbjct: 89  ENAEFSQICADNDIEFIGPSAETISLMGEKSKAKEEMHKAGVPIVEGSDGTVGDLDAAYE 148

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K + GG   G+ ++++          + S         E Y++      
Sbjct: 149 IASDIGFPVMVKAVAGGGGTGMRLVREADGFERAFNGARSEADAAFGNPEVYIEKFVEKP 208

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    L      V         ++          P+ +  + + +E+   A    +A+
Sbjct: 209 RHVEIQVLGDGRGNVMHFGERECSIQRRHQKLLEECPSPVVDEALREEMGAAAIRGAEAV 268

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +FL     R  +++E+N +
Sbjct: 269 NYEGAGTVEFLV-GADRNFYFMEMNTR 294


>gi|289675679|ref|ZP_06496569.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae FF5]
 gi|330895629|gb|EGH27936.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
 gi|330938353|gb|EGH41981.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. pisi str. 1704B]
 gi|330976785|gb|EGH76822.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +E    A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEKAREDVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|226361373|ref|YP_002779151.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus opacus
           B4]
 gi|226239858|dbj|BAH50206.1| glycinamide ribonucleotide transformylase PurT [Rhodococcus opacus
           B4]
          Length = 403

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/274 (13%), Positives = 68/274 (24%), Gaps = 33/274 (12%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVL----AHLKPDLAFNVL 58
           GK    AL+  G +V  +D                +D S    L       +P      +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYDNAPGHQVAHRAHTIDMSDPEALLRLVDAEQPHFVVPEI 88

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +  T      +       R                       
Sbjct: 89  EAIATDALATVEERGAAVVVPTARATQLTMNREGIRRLAAEELGLPTSPYEFAESLAEVR 148

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ------SSSWNHGDQLLIEQYV 172
            +   I  P VIKP+   S  G   ++    +             +      +  ++   
Sbjct: 149 AATDRIGFPCVIKPVMSSSGKGQSTVRGADDVEKAWEYALAGGRVNHGRVIVEGFVDFDY 208

Query: 173 DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
           +  +LT   +G      T    P           S        P  +        + +A 
Sbjct: 209 EITQLTVRAIGGDGEVGTFFCEPIGHLQD-----SGDYVESWQPQPMSDTALARSREVAE 263

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RGI   +         V++ E++ +P
Sbjct: 264 KVTSALGGRGIFGVELFV--KGDDVYFSEVSPRP 295


>gi|254458834|ref|ZP_05072258.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
 gi|207084600|gb|EDZ61888.1| RimK domain protein ATP-grasp [Campylobacterales bacterium GD 1]
          Length = 300

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/252 (15%), Positives = 79/252 (31%), Gaps = 22/252 (8%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K DL F+   G   +  +      L  +    +   + AL+ DK  +  V+ + G+    
Sbjct: 59  KLDLFFSYNAGEQTQYQMYLYQA-LNRVIPMINSYESFALTEDKFHTSFVLRNEGILTAD 117

Query: 110 SILVNRFTMDSQHLI---SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
             L +R        I       V KP  G   +G+  I+ + ++ + L   +        
Sbjct: 118 YKLCHRDDGHQLKKIIKKWDKMVYKPTDGWGGVGLTKIESEANLDMLLPFLNQM------ 171

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
             +     +E                    S +           +     +    +   E
Sbjct: 172 --DLRYFYVEKFIKYDNTDFRVDIVDGEFVSCYGRKASDTDWRTNITSGGSVFLREANDE 229

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +  +A  A +  G   I   D ++D        LE+N  P        P+     G +F 
Sbjct: 230 IIEIAKKACKVCGV-DIGGVDIIYDLEKEAYVVLEVNGIPAFAT----PDQ-EKMGLNFN 283

Query: 287 ----ELLLWMVE 294
               +L++ +++
Sbjct: 284 DKKIDLIVDLID 295


>gi|194245484|gb|ACF35351.1| carbamoylphosphate synthetase [Prolixocupes lobiceps]
          Length = 857

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALQEENIQXVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + VSS    V    +
Sbjct: 131 TFGGQTGLNCGVELETAGVFEKYGVKVLGTPIQSIINTEDRKIFGEQVSSIGEKVAPSSA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +     Q+    H  QL+I++
Sbjct: 191 VYSVQEALEAAEQLGYPVMARAAFSLGGLGSGFADNKEELRSIAQQAL--AHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G           + D         +       ++  +        +    Y  ++  
Sbjct: 249 SLKGXXXXXXXXVRDAFDNCITVCNMENVDP-LGIHTGESIVVAPSQTLTNKEYNSLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AINVIRHFGIVGECNIQYALSPDTDEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|123442076|ref|YP_001006059.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           enterocolitica subsp. enterocolitica 8081]
 gi|171704432|sp|A1JLK9|PURT_YERE8 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|122089037|emb|CAL11855.1| phosphoribosylglycinamide formyltransferase [Yersinia
           enterocolitica subsp. enterocolitica 8081]
          Length = 393

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRSVGLVL-AHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D +    L A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKRLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       ++ + + +                  
Sbjct: 84  EAIATDMLVELENMGQKVVPCAQATRLTMNREGIRLLAAETLQLPT-SSYRFADTESAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ +  +        +   G     +  V+G+   
Sbjct: 143 QAVSEIGYPCIVKPVMSSSGKGQSLIRSEPQLQAA--WDYAQQGGRAGSGKVIVEGLVHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +        + +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDVAVARAKEIASQVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|219847233|ref|YP_002461666.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus aggregans
           DSM 9485]
 gi|219541492|gb|ACL23230.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroflexus aggregans
           DSM 9485]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/259 (14%), Positives = 72/259 (27%), Gaps = 24/259 (9%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     +     + +         L  DK   ++ +   GVP  P  
Sbjct: 76  DAVHPG-YGFLSENPYFAEMCADCNLIFVGPPPEPIRLMGDKAIGRETMRKAGVPTVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              +      +D    I  P ++KP  GG   G+ V   +  +      + +        
Sbjct: 135 DGEVRSLDEAIDIARQIGYPVLLKPSGGGGGRGMRVAYDEADLQRAFATARAEAEAAFGN 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKE 226
               ++        +    L                 +          P   +  ++   
Sbjct: 195 GALLLEKYLTRVRHVEIQVLADKYGHAIHLGERDCSAQRRHQKIVEEAPSPVVTPELRAR 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYA 281
           +   A     +IG       +FL D      +++E+N       P +T            
Sbjct: 255 MGADAVRGITSIGYVNAGTLEFLLDEEGN-YYFIEMNTRIQVEHP-VTE--------QVT 304

Query: 282 GYSFRELLLWMVEDASCLR 300
           G    +L+ W +  AS  R
Sbjct: 305 GV---DLVRWQLLIASGER 320


>gi|66047628|ref|YP_237469.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae B728a]
 gi|63258335|gb|AAY39431.1| Acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. syringae B728a]
 gi|330969394|gb|EGH69460.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. aceris str. M302273PT]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +E    A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEKAREDVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|302185199|ref|ZP_07261872.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. syringae 642]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 60/181 (33%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAASQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +E    A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEKAREDVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|293602377|ref|ZP_06684823.1| phosphoribosylglycinamide formyltransferase 2 [Achromobacter
           piechaudii ATCC 43553]
 gi|292819139|gb|EFF78174.1| phosphoribosylglycinamide formyltransferase 2 [Achromobacter
           piechaudii ATCC 43553]
          Length = 405

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 34/283 (12%), Positives = 75/283 (26%), Gaps = 30/283 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                       ++  ++   +P +    +
Sbjct: 29  GKEVIIALQRLGVEVIAVDRYADAPGHQVAHRAHVVSMTDADALKKIIEQEQPHVIVPEI 88

Query: 59  HG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                     ++A       P   +  L       +  + + +     P           
Sbjct: 89  EAIATSLLVDLEAGGVTRVTPTARAAQLTMNREGIRRLAAETLGLPTSPYRFVDTEEELR 148

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG--- 174
                 I  P VIKP+   S  G  VIK    +        +   G        V+G   
Sbjct: 149 AAIDGGIGYPCVIKPVMSSSGKGQSVIKSADDV--AQSWRYAQEGGRVGGGRAIVEGFIR 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   +         +        +          P  +     +  + +A   
Sbjct: 207 FDYEITLLTVRARGADGTVETRYCEPIGHKQVDGDYVESWQPHPMSPAALERAREIALAV 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              +G  GI   +        +V++ E++ +P      +   +
Sbjct: 267 TSDLGGLGIFGVELFV--AGDQVWFSEVSPRP--HDTGMVTMI 305


>gi|254672651|emb|CBA06462.1| Biotin carboxylase [Neisseria meningitidis alpha275]
          Length = 454

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEEERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|229543897|ref|ZP_04432956.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus coagulans
           36D1]
 gi|229325036|gb|EEN90712.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus coagulans
           36D1]
          Length = 449

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 86/277 (31%), Gaps = 33/277 (11%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  D G +   +    D+  + + LA            D   N              
Sbjct: 17  IIRACRDLGIEAVAVYSEADKDALHVQLADEAYCIGPKASKDSYLNFANIISAATLTGCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +      A A    K  +++ +   GVP+ P    
Sbjct: 77  AIHPGYGFLAENADFAELCRECNIEFIGPSPEAIAKMGAKDVARETMKKAGVPIVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P +IK   GG   GI V   ++ +   +  +            
Sbjct: 137 LVKDAEEAKVVAKKIGYPVIIKATAGGGGKGIRVALNEEELVKGIHITQQEAATAFGNPG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      V         ++          P+     ++ +E+ 
Sbjct: 197 VYLEKYIEDFRHVEIQVMADKFGNVIHLGERDCTIQRRLQKLLEESPSPALSSEMREEMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A  A +A+   G    +F+FD  ++K +++E+N +
Sbjct: 257 QAAVKAAKAVDYTGAGTIEFIFDHRNQKFYFMEMNTR 293


>gi|254468052|ref|ZP_05081458.1| phosphoribosylglycinamide formyltransferase 2 [beta proteobacterium
           KB13]
 gi|207086862|gb|EDZ64145.1| phosphoribosylglycinamide formyltransferase 2 [beta proteobacterium
           KB13]
          Length = 398

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 28/280 (10%), Positives = 79/280 (28%), Gaps = 25/280 (8%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRS----VGLVLAHLKPDLAFNVL 58
           GK    +L+  G +V  +D                +D +    +  ++   KP L    +
Sbjct: 23  GKEVIISLQRLGMEVIAVDRYENAPGHQVAHRAYSIDMTNAAALEQLIQKEKPTLVVPEI 82

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         + ++      +  +       +                  +    
Sbjct: 83  EAINTKLLEKLEADNVTKVIPNVRAVQLTMNREGIRKLAAEDLKIPTSPYAFARSSDELK 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
           ++ + +  P  IKP    S  G   I+    +      +++     + ++I +     + 
Sbjct: 143 EAVNKVGLPCFIKPTMSSSGKGQSRIESMDDVERAWDYAANSGRVNEGVVIAEGQIDFDY 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++   SL+     +          +          P  +        + +A     A
Sbjct: 203 EITLLTVRSLNSEGNIITSYCEPIGHRQEDGDYVESWQPQPMNEKALATSKDIAEKVTSA 262

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
           +G  G+   +        +V++ E++ +P      +   +
Sbjct: 263 LGGLGLFGVELFI--KEDQVWFSEVSPRP--HDTGMVTMI 298


>gi|172044618|sp|Q0I600|PURT_SYNS3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 389

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 71/268 (26%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A A +  G  V   D                    D + +  V+   +PD+    +
Sbjct: 17  GKEVAIAAQRLGCHVIACDRYADAPAMQVADQAEVLTMTDPNALKTVVNKHQPDVLIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         +  IP   +  +       +  +   +              +   
Sbjct: 77  EALAVDALQALEDTGICVIPTARATAVTMNRDRIRNLAAGELGLRT-ARFAYASDAQELQ 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V+     +      + +   G    +        L 
Sbjct: 136 RAAAPLGWPVVVKPVMSSSGKGQSVVHSAAELDKAWEIAMAGARGSSAQVIVEE---FLD 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +                       + +        PA I     ++ Q +A      +
Sbjct: 193 FDLEITLLTIRQHDGTTLFCPPIGHQQANGDYQCSWQPASISPSQLQQAQTMARTVTDNL 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +F       +V + E++ +P
Sbjct: 253 GGAGLFGVEFFLC--GDEVVFSELSPRP 278


>gi|124004234|ref|ZP_01689080.1| pyruvate carboxylase subunit A [Microscilla marina ATCC 23134]
 gi|123990304|gb|EAY29803.1| pyruvate carboxylase subunit A [Microscilla marina ATCC 23134]
          Length = 514

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 37/233 (15%), Positives = 78/233 (33%), Gaps = 8/233 (3%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           +D+ +  V   L  D      +G   E+      +   +I +      A  +   K+ +K
Sbjct: 71  IDK-IIEVCKKLNVDAIHPG-YGFLSENATFARRVTEADIIFIGPSPEAIEVMGSKLAAK 128

Query: 98  QVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           + VS   +P+ P     I            I  P +IK   GG   G+ V++        
Sbjct: 129 EAVSKYDIPMVPGTPKAITDIEAAKVKAKEIGYPILIKASAGGGGKGMRVVENPADFEEQ 188

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           + ++ S           +++    +   +    L  T+  V         ++        
Sbjct: 189 MNRAVSEAVSAFGDGAVFIEKYITSPKHIEIQVLGDTQGNVIHLFERECSIQRRHQKVIE 248

Query: 214 VLPA-KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P+  +  +I + +   A    +A    G    +F+ D      ++LE+N +
Sbjct: 249 EAPSAVVTPEIRQAMGEAAVNVAKACNYYGAGTVEFIADEHLN-FYFLEMNTR 300


>gi|113953868|ref|YP_732122.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9311]
 gi|113881219|gb|ABI46177.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9311]
          Length = 393

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 71/268 (26%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A A +  G  V   D                    D + +  V+   +PD+    +
Sbjct: 21  GKEVAIAAQRLGCHVIACDRYADAPAMQVADQAEVLTMTDPNALKTVVNKHQPDVLIPEI 80

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         +  IP   +  +       +  +   +              +   
Sbjct: 81  EALAVDALQALEDTGICVIPTARATAVTMNRDRIRNLAAGELGLRT-ARFAYASDAQELQ 139

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  V+     +      + +   G    +        L 
Sbjct: 140 RAAAPLGWPVVVKPVMSSSGKGQSVVHSAAELDKAWEIAMAGARGSSAQVIVEE---FLD 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +                       + +        PA I     ++ Q +A      +
Sbjct: 197 FDLEITLLTIRQHDGTTLFCPPIGHQQANGDYQCSWQPASISPSQLQQAQTMARTVTDNL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +F       +V + E++ +P
Sbjct: 257 GGAGLFGVEFFLC--GDEVVFSELSPRP 282


>gi|30248664|ref|NP_840734.1| accC1; biotin carboxylase protein [Nitrosomonas europaea ATCC
           19718]
 gi|30180259|emb|CAD84564.1| accC1; biotin carboxylase protein [Nitrosomonas europaea ATCC
           19718]
          Length = 452

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/144 (15%), Positives = 51/144 (35%), Gaps = 3/144 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +IK   GG   G+ V+  + ++   ++ + +           Y +        +
Sbjct: 151 EIGYPVIIKAAGGGGGRGMRVVHTEAALSNAVITTRNEAQTAFGNPVVYAEKYLENPRHI 210

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCR 241
               L      V         ++          P   I + +  ++  L   A + I  R
Sbjct: 211 EFQVLADEYGNVVHLGERDCSMQRRHQKIIEEAPARGISVQLRDKIGELCVEACKRINYR 270

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G+   +FL+   + + +++E+N +
Sbjct: 271 GVGTFEFLY--ENNEFYFIEMNTR 292


>gi|320156104|ref|YP_004188483.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           MO6-24/O]
 gi|319931416|gb|ADV86280.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           MO6-24/O]
          Length = 391

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D   D                    +  V+A  +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYPDAPAMQVAHRSYVFDMLDASELEKVIAAEQPAFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +              +  +
Sbjct: 82  EAIATDKLVELEEQGLNVVPSAKATKLTMNREGIRRLAAEELGLTT-SPYRFADNYQQFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +S P V+KP+   S  G  VIK    I        +   G        V+G    
Sbjct: 141 EAVEAVSIPCVVKPVMSSSGKGQSVIKSPADIEKA--WQYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P ++  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAIDGVHFCAPIGHRQEDGDYRESWQ--PQQMSENAIKAAEYTAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  GI   +        KV + E++ +P
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP 282


>gi|312130630|ref|YP_003997970.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
 gi|311907176|gb|ADQ17617.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
          Length = 484

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 77/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D D+ +      L  D      +G   E+       E   I +      +  +   K+ 
Sbjct: 60  LDGDKILSKA-KELGVDGIHPG-YGFLSENAEFAEKTENAGITFIGPSPESIRIMGSKLA 117

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K+ V    +P+ P          +       I  P +IK   GG   G+ V++K +   
Sbjct: 118 AKERVKDYNIPMVPGTDTAITDPQTALETAISIGFPVLIKASAGGGGKGMRVVEKQEDFI 177

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             + ++ S           +++    +   +    L                ++      
Sbjct: 178 EQMERAVSEATAAFGDGSVFLEKYVASPRHIEIQVLADAYGNTIHLFERECSIQRRHQKV 237

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               P+ +  + I  ++   A    Q+   +G+   +FL D      ++LE+N +
Sbjct: 238 IEEAPSSVLDETIRSQMGAAAVRVAQSCNYKGVGTVEFLLDENKN-FYFLEMNTR 291


>gi|237509123|ref|ZP_04521838.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
 gi|235001328|gb|EEP50752.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Burkholderia
           pseudomallei MSHR346]
          Length = 481

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 21/145 (14%), Positives = 43/145 (29%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +   L  +             Y++       
Sbjct: 163 AARIGYPVMIKAAAGGGGRGIRVAHDAAQLAAQLPLAQREAQAAFGDGGVYLERFIARAR 222

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E  +   +      +             +   +   +   A    + +  
Sbjct: 223 HIEVQILGDGENVIHLFERECSLQRRRQKILEEAPSPSLTPALRDTLCASATRLARQVSY 282

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++LFD    + +++E+N +
Sbjct: 283 RGAGTLEYLFDDARGEFYFIEMNTR 307


>gi|193214424|ref|YP_001995623.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroherpeton
           thalassium ATCC 35110]
 gi|193087901|gb|ACF13176.1| acetyl-CoA carboxylase, biotin carboxylase [Chloroherpeton
           thalassium ATCC 35110]
          Length = 444

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++ K   +    + + S           Y++       
Sbjct: 148 AAQIGLPVIIKATAGGGGKGMRIVHKMDDLEKAFVTAQSEAEKSFGNSGVYIEKFVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +      V         ++          P+ +  + +  ++   A  A +AI 
Sbjct: 208 HVEIQVMGDQYGNVFHLGERDCTVQRRHQKLIEESPSPVMNEALRDKMGDAAVNAAKAIQ 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTVEFLVDKYMN-FYFMEMNTR 292


>gi|328714419|ref|XP_003245354.1| PREDICTED: acetyl-CoA carboxylase-like isoform 4 [Acyrthosiphon
           pisum]
          Length = 2373

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 15/232 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +  +L   K  +AF    G   +            I    + I     S   +    
Sbjct: 247 NPELPKLLDKNK--IAFI---GPPEKAMFALGDKIASSIVAQTAEIPTLPWSGSGVIGHY 301

Query: 99  VVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +           +++        +  P +IK  +GG   GI  ++  +  P   
Sbjct: 302 SGKKIEIGPDLYKKGCVASIEEGLVSAEKVGYPIMIKASEGGGGKGIRKVENTEEFPNAY 361

Query: 155 LQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            Q  +   G  + I +       L   ++ D   +   +            +        
Sbjct: 362 KQVQAEVPGSPIFIMKLAKCARHLEVQLLADQYGNAISLFGRDCSIQ----RRHQKIIEE 417

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    +++E+++ A    + +G       ++L+D      ++LE+N +
Sbjct: 418 APAVIAEPSVFEEMEKAAVRIAKMVGYVSAGTVEYLYDT-DGNYYFLELNPR 468


>gi|328714415|ref|XP_001946412.2| PREDICTED: acetyl-CoA carboxylase-like isoform 1 [Acyrthosiphon
           pisum]
          Length = 2354

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 15/232 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +  +L   K  +AF    G   +            I    + I     S   +    
Sbjct: 228 NPELPKLLDKNK--IAFI---GPPEKAMFALGDKIASSIVAQTAEIPTLPWSGSGVIGHY 282

Query: 99  VVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +           +++        +  P +IK  +GG   GI  ++  +  P   
Sbjct: 283 SGKKIEIGPDLYKKGCVASIEEGLVSAEKVGYPIMIKASEGGGGKGIRKVENTEEFPNAY 342

Query: 155 LQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            Q  +   G  + I +       L   ++ D   +   +            +        
Sbjct: 343 KQVQAEVPGSPIFIMKLAKCARHLEVQLLADQYGNAISLFGRDCSIQ----RRHQKIIEE 398

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    +++E+++ A    + +G       ++L+D      ++LE+N +
Sbjct: 399 APAVIAEPSVFEEMEKAAVRIAKMVGYVSAGTVEYLYDT-DGNYYFLELNPR 449


>gi|328714413|ref|XP_003245352.1| PREDICTED: acetyl-CoA carboxylase-like isoform 2 [Acyrthosiphon
           pisum]
 gi|328714417|ref|XP_003245353.1| PREDICTED: acetyl-CoA carboxylase-like isoform 3 [Acyrthosiphon
           pisum]
          Length = 2336

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 29/232 (12%), Positives = 69/232 (29%), Gaps = 15/232 (6%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +  +L   K  +AF    G   +            I    + I     S   +    
Sbjct: 210 NPELPKLLDKNK--IAFI---GPPEKAMFALGDKIASSIVAQTAEIPTLPWSGSGVIGHY 264

Query: 99  VVSSCGVPVCPSILVNRFTMDS----QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
                 +           +++        +  P +IK  +GG   GI  ++  +  P   
Sbjct: 265 SGKKIEIGPDLYKKGCVASIEEGLVSAEKVGYPIMIKASEGGGGKGIRKVENTEEFPNAY 324

Query: 155 LQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
            Q  +   G  + I +       L   ++ D   +   +            +        
Sbjct: 325 KQVQAEVPGSPIFIMKLAKCARHLEVQLLADQYGNAISLFGRDCSIQ----RRHQKIIEE 380

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    +++E+++ A    + +G       ++L+D      ++LE+N +
Sbjct: 381 APAVIAEPSVFEEMEKAAVRIAKMVGYVSAGTVEYLYDT-DGNYYFLELNPR 431


>gi|330813929|ref|YP_004358168.1| biotin carboxylase of acetyl-CoA carboxylase [Candidatus
           Pelagibacter sp. IMCC9063]
 gi|327487024|gb|AEA81429.1| biotin carboxylase of acetyl-CoA carboxylase [Candidatus
           Pelagibacter sp. IMCC9063]
          Length = 447

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/190 (14%), Positives = 65/190 (34%), Gaps = 28/190 (14%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
            + I  P +IK   GG   G+ +++KD  +  +L          +N+ +  + + + +  
Sbjct: 148 ANKIGYPVLIKAAGGGGGKGMKIVEKDSELLENLQIAKNEAKKFFNNDEVFIEKYFKNPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++ D   +   +            +             I     +++      + 
Sbjct: 208 HIEVQILSDGKDNTVHLGERDCTIQ----RRHQKVIEESPSPVITAKQREDLLNTCVQSI 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
             +G  G    +F++     + F+LE+N       P +T         A  G    +++ 
Sbjct: 264 SQLGYEGAGTLEFIY--EDGEFFFLEMNTRLQVEHP-VTE--------AVTGI---DIVK 309

Query: 291 WMVEDASCLR 300
             +E AS  +
Sbjct: 310 RQIEIASTGK 319


>gi|326803919|ref|YP_004321737.1| pyruvate carboxylase [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650896|gb|AEA01079.1| pyruvate carboxylase [Aerococcus urinae ACS-120-V-Col10a]
          Length = 1144

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/239 (11%), Positives = 73/239 (30%), Gaps = 17/239 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +    + D      +G   E+    +      I +         +  DK++
Sbjct: 62  LDI-EDIIRIAKETQADAIHPG-YGFLSENQEFASRCREEGIIFIGPNTDTLDMFGDKIK 119

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           +K      G+   P     +            +  P ++K   GG   G+ V++ D  + 
Sbjct: 120 AKAAAHQAGIQEVPGTEGDVESVEEVKAFAKEVGYPIMVKAALGGGGRGMRVVRSDDEVE 179

Query: 152 LDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                      +++   +    +   +   +   ++GD + +V  +            + 
Sbjct: 180 EAYKTAKSEAKTAFGSDEIYAEKYIENPKHIEVQILGDQAGNVVHLWERDCSIQ----RR 235

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                       +  D+   +   A    + +G       +FL        +++E+N +
Sbjct: 236 HQKVVEMAPSVSLDHDLRLRICEAARQLMENVGYVNAGTVEFLVSGDD--FYFIEVNPR 292


>gi|302123215|gb|ADK93199.1| CAD [Toxomerus marginatus]
          Length = 1250

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 342 SGSQAIKAMKEEKIQTILINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 401

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+      V+     V     
Sbjct: 402 TFGGQTALNCGVELEKAGVFQRYNVKILGTPIKSIIETEDRKIFADRVNEIGEKVAPSEI 461

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 462 AYSVEEALAAAESLGYPVMARAAFSLGGLGSGFANNKEELRN--LAEQALAHSSQLIIDK 519

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 520 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 578

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 579 AIKVIRHFGVVGECNIQYALNPSSEQFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 634

Query: 291 WM 292
            +
Sbjct: 635 KL 636


>gi|258624405|ref|ZP_05719352.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM603]
 gi|258583252|gb|EEW08054.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio mimicus
           VM603]
          Length = 391

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 82/302 (27%), Gaps = 36/302 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                       ++  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSHVFDMLDADALQQVIDLEKPHFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +                  
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLAAEELGLPT-SHYQFADSYESFA 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I    V KP+   S  G  VI+  + I        +   G        V+G    
Sbjct: 141 AAVETIGLACVCKPVMSSSGKGQSVIRTPEQIEAA--WQYAQQGGRSGAGRVIVEGFVDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQVMSENAIKAAEYVAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM-----TPVSIFPEMAAY-AGYSFRELL 289
           G  G+   +        KV + E++ +P   GM       +S F        G    +++
Sbjct: 257 GGYGLFGVELFV--KGDKVIFNEVSPRPHDTGMVTLISQELSEFALHVRAFTGLPIGQIV 314

Query: 290 LW 291
            +
Sbjct: 315 QY 316


>gi|119963622|ref|YP_947296.1| Acetyl-CoA carboxylase alpha chain [Arthrobacter aurescens TC1]
 gi|119950481|gb|ABM09392.1| Acetyl-CoA carboxylase alpha chain [Arthrobacter aurescens TC1]
          Length = 690

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 52/276 (18%), Positives = 93/276 (33%), Gaps = 39/276 (14%)

Query: 49  LKPDLAFNVL-----------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           LK D   +             +G   E+      L+   I +   GI A  +  DK+RSK
Sbjct: 38  LKIDAIIDACRRSGAEAVHPGYGFLSENVEFAKALDAAGITFIGPGIGAIEVMGDKIRSK 97

Query: 98  QVVSSCGVPVCPSILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             V +  VP  P I       +  +++   +  P +IKP  GG   G+ V+++ + +   
Sbjct: 98  NHVMAYDVPCVPGIAKPGLSDQELIEAAPGVGFPLLIKPSAGGGGKGMHVVERPEDMAST 157

Query: 154 LLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP-KSDFYSYELKYS 207
           L  +       +      L         +   V+ D   +V  +     S    ++    
Sbjct: 158 LATARRVAASAFGDDTLFLERLIRAPRHIEVQVLADNHGNVIHLGERECSLQRRHQKVIE 217

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV-- 264
              S          +    +   A  A +++   G    +FL  D    + F++E+N   
Sbjct: 218 EAPSALFESLPDGAEERARIGEAACNAARSVNYSGAGTVEFLVSDEHPDEFFFMEMNTRL 277

Query: 265 ---QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
               P         EM    G    +L+ W V  A+
Sbjct: 278 QVEHP-------VTEM--VTGI---DLVEWQVRIAA 301


>gi|89902323|ref|YP_524794.1| phosphoribosylglycinamide formyltransferase 2 [Rhodoferax
           ferrireducens T118]
 gi|122478378|sp|Q21SJ0|PURT_RHOFD RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|89347060|gb|ABD71263.1| phosphoribosylglycinamide formyltransferase 2 [Rhodoferax
           ferrireducens T118]
          Length = 408

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 40/278 (14%), Positives = 73/278 (26%), Gaps = 32/278 (11%)

Query: 19  GKACASALEDAGFKVSQID----------------VDRSVGLVLA----HLKPDLAFNVL 58
           GK    AL+  G +   +D                +  S   +L       KPDL    +
Sbjct: 24  GKEVIIALQRLGVETIAVDRYNHAPGQQVAHHTRTITMSDPALLKALIQAEKPDLVVPEI 83

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                    V     ++  IP   +  L       +  + + +     P           
Sbjct: 84  EAIATPMLEVLEATGVVRVIPTARAARLTMDREGIRRLAAETLGLPTSPYQFCDSFEELQ 143

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD------QLLIEQY 171
              +  I  P ++KP+   S  G   I     +      + +           +  I+  
Sbjct: 144 AAIEGGIGYPCIVKPVMSSSGKGQSKISGPADVQKAWDYAMAGGRVSHGRVIVEGFIDFD 203

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            +   LT    G      T    P            S     + PA +    +       
Sbjct: 204 YEITLLTVRAKGADGQIETHFCEPVGHLQVNGDYVESWQPHPMHPAALERARHIAKTVTD 263

Query: 232 FLAHQAIG---CRGISRSDFLFDPLSRKVFWLEINVQP 266
            L     G     GI   +        +V++ E++ +P
Sbjct: 264 DLGIAVDGQASGLGIFGVELFV--KGEQVWFSEVSPRP 299


>gi|218526228|gb|ACK86521.1| carbamoyl-phosphate synthase [Notiobiella viridis]
          Length = 711

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 84/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 123 SGSQAIKALREENIQTVLINPNIATVQTSKGLADKVYFLPLDPEYVEQVIRSERPGGVLL 182

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +          + I +   + D+    + V+     V    +
Sbjct: 183 TFGGQTALNCGVELEKANVFSKYGCKILGTPIQSIIETEDRKMFAEKVAEIGEKVAPSAA 242

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 243 VYSVEEALSAAEKIGYPVMARAAFSLGGLGSGFAHNKEQLST--LAYQALAHSSQLIIDK 300

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 301 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTT 359

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 360 AINVIRHFGVVGECNIQYALNPHSEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 415

Query: 291 WM 292
            +
Sbjct: 416 KL 417


>gi|226362533|ref|YP_002780311.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
 gi|226241018|dbj|BAH51366.1| acyl-CoA carboxylase alpha chain [Rhodococcus opacus B4]
          Length = 596

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 18/148 (12%), Positives = 39/148 (26%), Gaps = 9/148 (6%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIEL 177
               P  IK   GG   G+  +            +       +   D  L         +
Sbjct: 150 EYGYPVAIKATYGGGGRGMRTVASAAEAESAFASAKQESAAAFGRDDVYLERYLSSARHV 209

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V  D   +   I            +             +  ++ + +   +    + 
Sbjct: 210 EVQVFADTHGNAVWIGDRDCSVQ----RRHQKLIEEAPAPGLSDELRRAMGEASVRLAKQ 265

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +G  G    +FL +      ++LE+N +
Sbjct: 266 VGYVGAGTVEFLVEADREAFYFLEMNTR 293


>gi|319786021|ref|YP_004145496.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoxanthomonas
           suwonensis 11-1]
 gi|317464533|gb|ADV26265.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudoxanthomonas
           suwonensis 11-1]
          Length = 455

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +         E Y++       
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHAEAALKAAIETTKTEAKAAFGNGEVYMEKYLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          P   I  +   E+ ++   A   IG
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITAEQRAEIGKVCTEACIRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGRFYFIEMNTR 292


>gi|300122746|emb|CBK23311.2| Pyruvate Carboxylase (subunit ?) [Blastocystis hominis]
          Length = 1175

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 44/273 (16%), Positives = 87/273 (31%), Gaps = 29/273 (10%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASAL 89
            + +D+ +  G            + +H   G   E+      +E   I +    +    +
Sbjct: 87  PTIVDIAKKNG-----------VSAIHPGYGFLSENAEFAKAVEDAGIVFIGPTVENLRM 135

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIK 145
             DK  +++V    G+PV P       T +           P +IK   GG   G+ V++
Sbjct: 136 MADKTSARKVAIDHGIPVVPGTPDPVATYEQALSFCNEVGYPVIIKAAFGGGGKGMRVVR 195

Query: 146 KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            +Q +  +   +S            +++        +    +      V         ++
Sbjct: 196 SEQELKQNFELASREALSAFGNGTIFLERYLEEPRHIEVQVIGDGTGRVVHLYERDCSVQ 255

Query: 206 YSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV 264
                     PA      I   + + A      I  R     +FL D    + +++E+N 
Sbjct: 256 RRHQKVIENAPAVNLDPAIRDGILQSACRLCSLIKYRSAGTVEFLVDKQ-GRYYFMEVNP 314

Query: 265 --------QPGMTPVSIFPEMAA-YAGYSFREL 288
                      +T ++I  +      GYSF EL
Sbjct: 315 RIQVEHTVSEEITGINIVQKQIQLAQGYSFEEL 347


>gi|294944041|ref|XP_002784057.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
 gi|239897091|gb|EER15853.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
          Length = 1533

 Score = 46.0 bits (107), Expect = 0.007,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG  C  AL+++      I+ +                       V  V+   KPD  F 
Sbjct: 492 SGSQCIKALKESNIMSVLINPNIATVQTSKGLADKVYFLPVTPEFVTSVIEIEKPDGLFC 551

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G              +L+   +    + I +  ++ D+             V    S
Sbjct: 552 TFGGQTALNCAVALHDAGVLKKHNVRVLGTPISSIVMTEDRELFSKAVETVGYKVAESES 611

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+   +  P +++       LG      +  +   L  S       Q+++++
Sbjct: 612 CTTVEEAVDAAAKLGYPVLVRAAYALGGLGSGFAANEMELRDLLPISF--AASKQVIVDK 669

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y  +++ 
Sbjct: 670 SLRGW-KEVEYEVVRDSQDNCITVCNMENFDPMGIHTGDSIVVAPSQTLSNADYYRLRKC 728

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + IG  G     +  DP S +   +E+N +  ++  S     +   GY    +  
Sbjct: 729 AIQMIRHIGIVGECNIQYAVDPHSDQFRIIEVNAR--LSRSS--ALASKATGYPLAYVAA 784

Query: 291 WM 292
            +
Sbjct: 785 KL 786


>gi|332876748|ref|ZP_08444506.1| phosphoribosylglycinamide formyltransferase 2 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
 gi|332685307|gb|EGJ58146.1| phosphoribosylglycinamide formyltransferase 2 [Capnocytophaga sp.
           oral taxon 329 str. F0087]
          Length = 389

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 13/241 (5%)

Query: 33  VSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
              +D D ++  V+   KPD+    +     E       + +  +P   +          
Sbjct: 49  FHMLDGD-ALMAVVEKHKPDIIVPEIEAIRTEKLYDCEKMGIQVVPSARAVNFTMNRKEI 107

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +  +   +                   +  +I  P +IKPL   S  G   +     +  
Sbjct: 108 RELAHTELGLKT-ADYRYAKTFDELKAAADVIGFPCIIKPLMSSSGHGQSKVDSPADLAH 166

Query: 153 DLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
               + +   GD  ++++EQ++        +        T    P         +     
Sbjct: 167 AWEYACAGARGDVKEVIVEQFIPFDSEITLLTVTQQNGPTLFCQPIGHV-----QKGGDY 221

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---G 267
                PA I  ++ K+ Q +A    +A+   GI   +F        V + E++ +P   G
Sbjct: 222 RESFQPAAISPEMLKDAQDMAEKITRALTGAGIWGVEFFLSHKDG-VIFSELSPRPHDTG 280

Query: 268 M 268
           M
Sbjct: 281 M 281


>gi|299483114|gb|ADJ19304.1| carbamoyl phosphate synthetase-aspartate
           transcarbamoylase-dihydroorotase [Actina viridis]
          Length = 1173

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 87/302 (28%), Gaps = 33/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P+    
Sbjct: 384 SGSQAIKALKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIQAERPNGVLL 443

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +           +    + I +   + D+     +       V    +
Sbjct: 444 TFGGQTALNCGVELERAGTFAKYNVKILGTPIKSIIETEDRKLFAERVNEIGEKVAPSEA 503

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +               ++   L LL   + +H  QL+I++
Sbjct: 504 VTSIEEAIDAADRLGYPVMARXAAFSLGGLGSGFANNRE-ELTLLAHQALSHSSQLIIDK 562

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y  ++  
Sbjct: 563 SLKGW-KEVEYEVVRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNFEYNMLRTT 621

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 622 AINVIKHFGVVGECNIQYALNPFSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 677

Query: 291 WM 292
            +
Sbjct: 678 KL 679


>gi|19746702|ref|NP_607838.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS8232]
 gi|139473234|ref|YP_001127949.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes str. Manfredo]
 gi|161761304|ref|YP_060798.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS10394]
 gi|162139077|ref|YP_597219.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS9429]
 gi|162139126|ref|YP_601109.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS2096]
 gi|19748926|gb|AAL98337.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes MGAS8232]
 gi|134271480|emb|CAM29701.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Streptococcus
           pyogenes str. Manfredo]
          Length = 454

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 78/221 (35%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +         +  K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRHNQKVLEESPSIAIGNTLRHEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 257 QAAVRAAKAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 293


>gi|87307732|ref|ZP_01089875.1| biotin carboxylase [Blastopirellula marina DSM 3645]
 gi|87289346|gb|EAQ81237.1| biotin carboxylase [Blastopirellula marina DSM 3645]
          Length = 448

 Score = 46.0 bits (107), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 73/281 (25%), Gaps = 40/281 (14%)

Query: 19  GKACASALEDAGFKVSQI--------------------DVDRSVGLVLAHLKPDLAFNVL 58
                 A ++ G +   I                       +S    L   K D   +  
Sbjct: 14  ALRIIRACKELGVETVAIFSEADRGASYLELADEAYCVGPAKSAQSYL---KIDRVISAA 70

Query: 59  H-----------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
                       G   E+     I     I +      A     DK  ++++  +  VPV
Sbjct: 71  EVGNVEAIHPGYGFLAENAQFNEICRSCNIDFIGPSPEAMLRLGDKNEARKMARAAEVPV 130

Query: 108 CPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            P     I  +   + + H I  P +IK   GG   G+ V   D  +   L Q+ +    
Sbjct: 131 VPGSDGLIEDHEEALKTAHEIGFPVLIKATAGGGGKGMRVAANDLVLKTALQQAQNEAQA 190

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLD 222
                  Y++        +    +      V          +          PA      
Sbjct: 191 AFGNGGVYLEKYVEHPRHVEVQVVADHHGNVVHLFERECSTQRRHQKLIEESPAPNLSAK 250

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               +   A    Q          +F+ D      +++E+N
Sbjct: 251 TRDAICAAAVRMIQGADYTNAGTVEFIVD-KDENFYFIEVN 290


>gi|145590409|ref|YP_001152411.1| carbamoyl phosphate synthase large subunit [Pyrobaculum arsenaticum
           DSM 13514]
 gi|145282177|gb|ABP49759.1| carbamoyl-phosphate synthase large subunit [Pyrobaculum arsenaticum
           DSM 13514]
          Length = 1025

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 92/302 (30%), Gaps = 32/302 (10%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A  + G     ++ +                       +  V+   +PD    
Sbjct: 26  SGSQALKAFREEGISTVLVNPNIATIQTSKLLADRVYFVPIARHFLEQVIERERPDAIAC 85

Query: 57  VLHGNFGEDGLVQAI------LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G       V+           + +  T    +  ALS D  +     +   VP    
Sbjct: 86  GFGGQTALSACVELYDSGILSKYGVRVIGTPVRGIKRALSRDLFQKAMKEAGIPVPPSSP 145

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    +  P V++        G  V + ++++   + ++ + +   ++L+E+
Sbjct: 146 AKSPEEALEIARGLGYPIVVRVSFNLGGAGAFVARSEEALRARIYKAFAQSAIGEVLVEK 205

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           Y++G                  AV   +       ++  +        +  + Y++ + +
Sbjct: 206 YLEGW-KEVEFEVVRDAYDNVAAVVCMENVDPMGVHTGDSIVVAPCLTLTDEEYQKARDI 264

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           +    ++I   G        +    + + +E N  P M+  S     +  +GY    +  
Sbjct: 265 SIGVARSIELVGEGNVQVAVNYAGPEQYAIETN--PRMSRSS--ALASKASGYPLAYIAA 320

Query: 291 WM 292
            +
Sbjct: 321 KL 322


>gi|68536099|ref|YP_250804.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           jeikeium K411]
 gi|68263698|emb|CAI37186.1| carbamoyl-phosphate synthase large chain [Corynebacterium jeikeium
           K411]
          Length = 1121

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 93/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHL-----------------KP 51
           SG      L++ G +V+ I         D + +    +  +                 K 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEFADNTYIEPIAPKYIEKIFQEQQAAGHKV 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  +Q      L+   +    + I A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDRLGILDKYGVELIGADIDAIERGEDRQKFKDIVAKIGGDS 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +   ++ +        + +    
Sbjct: 149 ARSRVCHNMEEVHETVAELGLPVVVRPSFTMGGLGSGLAFNEKDLERIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +   
Sbjct: 209 VLIEESILGWKEFELELMRDGKDNVVVVCSIENVDALGVHTGDSMTVAPSMTLTDREYQV 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAILREVGVDTGGCNIQFAVNPKDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331



 Score = 37.5 bits (85), Expect = 2.2,   Method: Composition-based stats.
 Identities = 23/176 (13%), Positives = 63/176 (35%), Gaps = 10/176 (5%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIE 176
            D    I  P +++P       G+ ++  D+S+   + +++       +L+++++D  IE
Sbjct: 718 HDVAARIGFPVLVRPSYVLGGRGMEIVYDDESLSDYIQRATEITSDHPVLVDRFLDSAIE 777

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           +    + D         +   +           ++  + P  +  +   +V++       
Sbjct: 778 IDVDALCDGENVYLAGVMEHIEEAGIHSG---DSACAIPPMTLGAEDIDKVRKATAKLAH 834

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
            IG +G+    F        ++ +E N +   T     P ++   G    +    +
Sbjct: 835 GIGVKGLMNVQFAL--KDDILYVIEANPRASRT----VPFVSKATGVQLSKAAARI 884


>gi|67539658|ref|XP_663603.1| hypothetical protein AN5999.2 [Aspergillus nidulans FGSC A4]
 gi|40738558|gb|EAA57748.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
 gi|259479818|tpe|CBF70389.1| TPA: carbamoyl-phosphate synthetase, arginine-specific large chain
           (Eurofung) [Aspergillus nidulans FGSC A4]
          Length = 1173

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/296 (12%), Positives = 85/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 119 SGSQALKALKEAGVQSVLINPNIATIQTDHKLADEVYYLPVTPEYVTYVIERERPDGIFL 178

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 179 SFGGQTALNLGVQMNRMGTFERYGVRVLGTSIKTLETSEDRDLFAKALNEINIPIAESIA 238

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG       + +     +S +     Q+L+E+
Sbjct: 239 VGTVDEALKAADEVGYPIIVRSAYALGGLGSGFANNPEELKNLASRSLTL--SPQILVEK 296

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 297 SLRGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 355

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 356 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 407


>gi|149727686|ref|XP_001502475.1| PREDICTED: carbamoyl-phosphate synthetase 2, aspartate
           transcarbamylase, and dihydroorotase isoform 1 [Equus
           caballus]
          Length = 2225

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/309 (12%), Positives = 91/309 (29%), Gaps = 43/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITSHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+    S+       +    +
Sbjct: 475 TFGGQTALNCGVELTRAGVLARYGVRVLGTPVKTIELTEDRRAFASRMAEIGEHIAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +     Q+LI++
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNKEELSALVATAFAHT--SQVLIDK 592

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y+ +++ 
Sbjct: 593 SLKGW-KEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNNREYQLLRQT 651

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A  
Sbjct: 652 AIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 709

Query: 282 --GYSFREL 288
             G    EL
Sbjct: 710 ALGIPLPEL 718


>gi|149053692|gb|EDM05509.1| acetyl-coenzyme A carboxylase alpha, isoform CRA_b [Rattus
           norvegicus]
 gi|149053694|gb|EDM05511.1| acetyl-coenzyme A carboxylase alpha, isoform CRA_b [Rattus
           norvegicus]
          Length = 2169

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 88  LRVDWQENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 147

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 148 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 204

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 205 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 262

Query: 264 VQ 265
            +
Sbjct: 263 PR 264


>gi|315444657|ref|YP_004077536.1| carbamoyl-phosphate synthase large subunit [Mycobacterium sp.
           Spyr1]
 gi|315262960|gb|ADT99701.1| carbamoyl-phosphate synthase large subunit [Mycobacterium sp.
           Spyr1]
          Length = 1112

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L   G +V+ I+ +                       V  V+A       K 
Sbjct: 29  SGTQACRVLRAEGLQVTLINSNPATIMTDPEYADHTYVEPITADFVEKVIAQQAERGNKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +          LE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DALLPTLGGQTALNTAVKLYENGALERYDVELIGANFDAIQRGEDRQKFKDIVTKVGGES 148

Query: 108 CPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +        D+   +  P V++P      LG  +      +     +  + +    
Sbjct: 149 AKSRVCFTMDEVRDTVAELGLPVVVRPSFTMGGLGSGMAYSADDVERMAGEGLAASPSAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +F    +      +          +  K
Sbjct: 209 VLIEESIYGWKEYELELMRDGRDNVVVVCSIENFDPMGVHTGDSVTVAPAMTLTDREYQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  +  +     G     F  +P   ++  +E+N  P ++  S            +
Sbjct: 269 MRTLGIEILREVGVDTGGCNIQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY+  E++  +
Sbjct: 327 IAAKLAIGYTLDEIVNDI 344


>gi|254933923|gb|ACT87570.1| carbamoylphosphate synthetase [Apoda biguttata]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G       + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVSLQKSKVFEKYNVNVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +     T+ +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 496 VSSVDETIIAAQQIGYPVMARSAFSLGGLGSGFANNEEELRT--LAYQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYTEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|150026407|ref|YP_001297233.1| biotin carboxylase [Flavobacterium psychrophilum JIP02/86]
 gi|149772948|emb|CAL44432.1| Biotin carboxylase [Flavobacterium psychrophilum JIP02/86]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/252 (13%), Positives = 74/252 (29%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I     I +  +
Sbjct: 47  EAVCIGPPPSNLSYLKMSNIIAAAEITNADAIHPG-YGFLSENAKFSKICHEHNIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSS 138
                    DK  +K  +   GVP  P  +    + +           P ++K   GG  
Sbjct: 106 SPEMIDRMGDKASAKSTMIEAGVPCVPGSVGILESYEQAEQLAAEFGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + +    L +   +   +   ++GD+      ++
Sbjct: 166 KGMRAVWKQEDLLKAWEGARQESAAAFGNDGMYLEKLIEEPRHIEIQIVGDSFGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +  ++  ++   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDELRDKMGLAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|150401430|ref|YP_001325196.1| pyruvate carboxylase subunit A [Methanococcus aeolicus Nankai-3]
 gi|150014133|gb|ABR56584.1| acetyl-CoA carboxylase, biotin carboxylase [Methanococcus aeolicus
           Nankai-3]
          Length = 509

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG  +G+ V    Q +   +  + S           +++        +   
Sbjct: 153 YPVIIKASAGGGGMGMAVAYNKQELKEVVESTKSIAQSAFGDSTVFIEKYLENPRHIEIQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            L      V         ++          P   +  ++ K++   A  A +AI      
Sbjct: 213 VLGDKYGNVVHLGDRECSIQRRHQKLIEEAPSPIMTEELRKKMGDAAISAAKAINYYSAG 272

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL+D  + + ++LE+N +
Sbjct: 273 TVEFLYD--NGEFYFLEMNTR 291


>gi|145224325|ref|YP_001135003.1| carbamoyl phosphate synthase large subunit [Mycobacterium gilvum
           PYR-GCK]
 gi|189081830|sp|A4TBY6|CARB_MYCGI RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|145216811|gb|ABP46215.1| carbamoyl-phosphate synthase large subunit [Mycobacterium gilvum
           PYR-GCK]
          Length = 1112

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 46/318 (14%), Positives = 94/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHL-----KP 51
           SG      L   G +V+ I+ +                       V  V+A       K 
Sbjct: 29  SGTQACRVLRAEGLQVTLINSNPATIMTDPEYADHTYVEPITADFVEKVIAQQAERGNKI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +          LE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DALLPTLGGQTALNTAVKLYENGALERYDVELIGANFDAIQRGEDRQKFKDIVTKVGGES 148

Query: 108 CPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +        D+   +  P V++P      LG  +      +     +  + +    
Sbjct: 149 AKSRVCFTMDEVRDTVAELGLPVVVRPSFTMGGLGSGMAYSADDVERMAGEGLAASPSAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +F    +      +          +  K
Sbjct: 209 VLIEESIYGWKEYELELMRDGRDNVVVVCSIENFDPMGVHTGDSVTVAPAMTLTDREYQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  +  +     G     F  +P   ++  +E+N  P ++  S            +
Sbjct: 269 MRTLGIEILREVGVDTGGCNIQFAVNPKDGRLIVIEMN--PRVSRSSALASKATGFPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY+  E++  +
Sbjct: 327 IAAKLAIGYTLDEIVNDI 344


>gi|327396438|dbj|BAK13860.1| urea amidolyase DUR1,2 [Pantoea ananatis AJ13355]
          Length = 1205

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      +++                    +++       
Sbjct: 147 ASHIGYPVMLKSTAGGGGIGLTRCADAEALRHAWESVRRLGEQFFSDAGVFLERCIDHAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P      +   A    + + 
Sbjct: 207 HVEVQIFGDGKGTVVALGERDCSLQRRNQKVVEETPAPCLPAATRDALLASAVRLGEVVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     ++++D      ++LE+N +
Sbjct: 267 YRSAGTVEYIYDAQQDAFYFLEVNTR 292


>gi|291616199|ref|YP_003518941.1| DUR1,2 [Pantoea ananatis LMG 20103]
 gi|291151229|gb|ADD75813.1| DUR1,2 [Pantoea ananatis LMG 20103]
          Length = 1805

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+      +++                    +++       
Sbjct: 747 ASHIGYPVMLKSTAGGGGIGLTRCADAEALRHAWESVRRLGEQFFSDAGVFLERCIDHAR 806

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P      +   A    + + 
Sbjct: 807 HVEVQIFGDGKGTVVALGERDCSLQRRNQKVVEETPAPCLPAATRDALLASAVRLGEVVN 866

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     ++++D      ++LE+N +
Sbjct: 867 YRSAGTVEYIYDAQQDAFYFLEVNTR 892


>gi|190891926|ref|YP_001978468.1| propionyl-CoA carboxylase, alpha subunit [Rhizobium etli CIAT 652]
 gi|190697205|gb|ACE91290.1| propionyl-CoA carboxylase protein, alpha subunit [Rhizobium etli
           CIAT 652]
          Length = 669

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERASFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLGVIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                I+     P +IK   GG   G+ +      +     ++ S           +++ 
Sbjct: 142 AHAETIAGGIGYPVMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDENTRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LARAVEYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRVAA 317


>gi|13475023|ref|NP_106581.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
 gi|14025768|dbj|BAB52367.1| 3-methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Mesorhizobium loti MAFF303099]
          Length = 653

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 22/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  ++        L  +           +  ++       
Sbjct: 151 AIEIGFPVLIKARAGGGGKGMRRVETAGEFADALASAQREAKASFGDDKVLIEKYVEKPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +                      +          PA  +  ++   +   A  A +AI 
Sbjct: 211 HIEVQVFGDNHGNGVHLFERDCSAQRRHQKVIEEAPAPGMTPEMRVAMTHAAVKAAKAIN 270

Query: 240 CRGISRSDFLFDPLSR----KVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLL 290
             G    +F+ D        + +++E+N       P MT +          G   ++L+ 
Sbjct: 271 YSGAGTIEFIVDASEGLRADRFWFMEMNTRLQVEHP-MTEM--------VTG---QDLVE 318

Query: 291 WMVEDAS 297
           W +  A+
Sbjct: 319 WQIRVAA 325


>gi|255003279|ref|ZP_05278243.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. Puerto Rico]
          Length = 659

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H   G   E+      L    + +    
Sbjct: 47  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  +    +      I+     P +IK   GG   
Sbjct: 107 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V+K  + +    + +++           +++        +    +      V     
Sbjct: 167 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++ ++       P+       ++          + +    +   +F+ D    + +
Sbjct: 227 RECSIQRNNQKVIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK-RFY 285

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +LE+N       P      +   +         +L+  M++ A
Sbjct: 286 FLEMNTRLQVEHP---VTELVTRI---------DLVEEMIKIA 316


>gi|254995113|ref|ZP_05277303.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. Mississippi]
          Length = 659

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H   G   E+      L    + +    
Sbjct: 47  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  +    +      I+     P +IK   GG   
Sbjct: 107 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 166

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V+K  + +    + +++           +++        +    +      V     
Sbjct: 167 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 226

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++ ++       P+       ++          + +    +   +F+ D    + +
Sbjct: 227 RECSIQRNNQKVIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK-RFY 285

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +LE+N       P      +   +         +L+  M++ A
Sbjct: 286 FLEMNTRLQVEHP---VTELVTRI---------DLVEEMIKIA 316


>gi|57866550|ref|YP_188235.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis RP62A]
 gi|81819420|sp|Q5HQA5|PURK_STAEQ RecName: Full=N5-carboxyaminoimidazole ribonucleotide synthase;
           Short=N5-CAIR synthase; AltName:
           Full=5-(carboxyamino)imidazole ribonucleotide synthetase
 gi|57637208|gb|AAW53996.1| phosphoribosylaminoimidazole carboxylase, ATPase subunit
           [Staphylococcus epidermidis RP62A]
          Length = 375

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/264 (14%), Positives = 80/264 (30%), Gaps = 28/264 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNFGEDGLVQAI 71
           GK  A + +  G+KV  +D +       V     H   D   A N L  N          
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDDEQALNQLGENSDVVTYEFEN 80

Query: 72  L------ELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL 123
           +      +L ++ +   G  A  L  D++  KQ    ++  +     I  N+  + +   
Sbjct: 81  ISSEQLKKLTKLYHIPQGYQAIELLQDRLTEKQTLLEANTQIVPFVQIQTNQDLLKAIEK 140

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +  P+++K   GG      + ++ D  +              +  ++   +         
Sbjct: 141 LGFPFIVKTRFGGYDGKGQILVRNDSELDEAYQLVEKQECVAEQYLDIQKEVSLTVTIGN 200

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +           +   ++                  D   E ++      +AI   G
Sbjct: 201 EQQTTYFPLQENEHQNQILFKTVV-----------PARSDKENEARKEVEKITRAIHFVG 249

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               +F  D  +  ++  EI  +P
Sbjct: 250 TFTVEFFIDKENN-LYVNEIAPRP 272


>gi|308184823|ref|YP_003928956.1| biotin carboxylase [Helicobacter pylori SJM180]
 gi|308060743|gb|ADO02639.1| biotin carboxylase [Helicobacter pylori SJM180]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/259 (16%), Positives = 84/259 (32%), Gaps = 25/259 (9%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 84  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKAKAKSVMKEAGMPVI 142

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                 +   +   +    I  P +IK   GG   G+ V+     +    L + +     
Sbjct: 143 EGSDGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVGDKSKLKNLYLAAETEALSA 202

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-I 223
                 Y++        +    L      V         ++          PA +  + +
Sbjct: 203 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGERDCSVQRRQQKLIEETPAVVLEESV 262

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--- 280
            + +   A  A + IG  G    +FL D   +  +++E+N +              +   
Sbjct: 263 RERLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVEHTIS 312

Query: 281 ---AGYSFRELLLWMVEDA 296
              +G +   L+ WM+  A
Sbjct: 313 EMVSGLN---LIEWMIRIA 328


>gi|194217238|ref|XP_001918337.1| PREDICTED: acetyl-Coenzyme A carboxylase alpha [Equus caballus]
          Length = 2288

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 207 LRVDWQENDFTKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 266

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 267 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 323

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 324 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 381

Query: 264 VQ 265
            +
Sbjct: 382 PR 383


>gi|169631613|ref|YP_001705262.1| putative acyl-CoA carboxylase alpha subunit AccA [Mycobacterium
           abscessus ATCC 19977]
 gi|169243580|emb|CAM64608.1| Putative acyl-CoA carboxylase alpha subunit AccA [Mycobacterium
           abscessus]
          Length = 653

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 19/189 (10%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP  GG   G+ V+     I   L+ S              V+     
Sbjct: 142 FTAEKIGAPLIIKPSAGGGGKGMRVVHDLGGISDALVASRREAAALFGDDTLLVERYLAR 201

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
              +       T   V         L+          P+ +    +   + + A    ++
Sbjct: 202 PRHIEVQVFGDTHGNVVHLGERECSLQRRHQKVIEEAPSALLTPQLRAAMGQTACQIARS 261

Query: 238 IGCRGISRSDFLFDPLSRK-VFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
           +G  G    +F+ D  + +  +++E+N       P         EM    G    +L+ W
Sbjct: 262 VGYFGAGTVEFILDSDAPESYYFMEMNTRLQVEHP-------VTEM--VTGI---DLVQW 309

Query: 292 MVEDASCLR 300
            +  A+  R
Sbjct: 310 QILVAAGER 318


>gi|260905530|ref|ZP_05913852.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Brevibacterium linens BL2]
          Length = 696

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 82/281 (29%), Gaps = 34/281 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAH-----------------LKPDLAF------ 55
                      G +   +  D                          L+ D         
Sbjct: 14  ALRVIRTCRRLGIRTVAVYSDADAQAAHVKAADTAVHLGPAQASESYLRIDKVIAAAKTT 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+       E   I +   G  A     DK+ +K  VS  GVP+ P 
Sbjct: 74  GAEAIHPGYGFLSENADFSDACEEAGIVFLGPGAEAIRTMGDKITAKNAVSQRGVPLVPG 133

Query: 111 ----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                + N   + +   I  P +IKP  GG   G+  + +   +   L  +         
Sbjct: 134 TKDAAMSNESLVTAADDIGFPVLIKPSAGGGGKGMHAVFEPSGLATALDTARREAASSFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYK 225
               +++ +  T   +    +      V         L+          P+ +  +    
Sbjct: 194 DDTLFLERLVATPRHIEVQVMADAHGNVIHLGERECSLQRRHQKVIEEAPSALLDEATRA 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINVQ 265
            + + A    +++G RG    +F+       + F++E+N +
Sbjct: 254 RIGQAACETAKSVGYRGAGTVEFIVGADRPDEFFFMEMNTR 294


>gi|332162008|ref|YP_004298585.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
 gi|325666238|gb|ADZ42882.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           enterocolitica subsp. palearctica 105.5R(r)]
          Length = 393

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVELENMGQKVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTESAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ +  +        +   G     +  V+G+   
Sbjct: 143 QAVSEIGYPCIVKPVMSSSGKGQSLIRNEPQLQAA--WDYAQQGGRAGGGKVIVEGLIHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +        + +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDVAVARAKEIASQVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|322833586|ref|YP_004213613.1| phosphoribosylglycinamide formyltransferase 2 [Rahnella sp. Y9602]
 gi|321168787|gb|ADW74486.1| phosphoribosylglycinamide formyltransferase 2 [Rahnella sp. Y9602]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  V+    PD     +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMQVAHRSHVINMLDGDALKQVIESEHPDFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATSMLVELEKQGHNVVPCAEATRLTMNREGIRRLAAETLKLPT-STYQFADDEAAVR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P +IKP+   S  G  +I+    +        +   G        V+G+   
Sbjct: 143 EAIDAIGYPCIIKPVMSSSGKGQSLIRSADQLQAA--WDYAQQGGRAGGGRVIVEGLVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  + +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQQMTDLALQRAKDIAEKVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G +G+   +        +V + E++ +P   GM
Sbjct: 259 GGKGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|316934703|ref|YP_004109685.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
 gi|315602417|gb|ADU44952.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Rhodopseudomonas palustris DX-1]
          Length = 656

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 51/150 (34%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++K   ++   L  + S            ++   
Sbjct: 149 MIREAERIGFPIMIKAVAGGGGRGMRLVKDAAALADALRSARSEAQSAFGDPTVILERAI 208

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAH 235
           L    +                     ++          P+    + + +++  +A  A 
Sbjct: 209 LQPRHIEIQVFGDRYGGAIHLGERDCSVQRRHQKLIEEAPSPAVSEALREQMGTVAVNAV 268

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AIG  G    +FL D      +++E+N +
Sbjct: 269 KAIGYEGAGTLEFLLDAEGN-FYFMEMNTR 297


>gi|254934081|gb|ACT87649.1| carbamoylphosphate synthetase [Synemon plana]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 43/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAIQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 QFGGQTALNCGVELQKSKVFEKYNVNVLGTPIQSIIDTEDRKIFAEKINAIGEHVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   +L   + +H DQL+I++
Sbjct: 496 VSTVEEALTAALQIGYPVMSRSAFSLGGLGSGFANNEDEL--KILAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    +  G  G     +  +P S + + +E+N +  ++  S        +P     A  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 670

Query: 282 --GYSFREL 288
             G S  E+
Sbjct: 671 ALGISLPEI 679


>gi|254934031|gb|ACT87624.1| carbamoylphosphate synthetase [Macrosoma satellitiata satellitiata]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I A   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELKKSKVFEKYNVSVLGTPIQAIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H +QL+I++
Sbjct: 496 VSSVEEALAAALQIGYPVMARSAFSLGGLGSGFANNEDELKT--LAHHALSHSEQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|224056010|ref|XP_002193056.1| PREDICTED: carbamoyl-phosphate synthetase 1 [Taeniopygia guttata]
          Length = 1500

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/305 (13%), Positives = 103/305 (33%), Gaps = 37/305 (12%)

Query: 18  SGKACASALEDAGFKVSQIDVD------------------------RSVGLVLAHLKPDL 53
           SG     AL++   K+  ++ +                        + V  V+   +PD 
Sbjct: 444 SGSQAVKALKEENVKIVLMNPNIASVQTNETGLKQADAVYFLPITPQFVSEVIKAERPDG 503

Query: 54  AFNVLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS--SCGVPV 107
               + G      G +   Q +L+   +    + + +   + D+      ++  +  +  
Sbjct: 504 LILGMGGQTALNCGVELFKQGVLQQYGVKVLGTSVESIMATEDRKLFSAKLTELNEKIAP 563

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             ++      + +   I  P +I+       LG  +    +S+ LDL   +       L+
Sbjct: 564 SLAVESVEDALKAAEKICYPVMIRSAYALGGLGSGICPDKESL-LDLGTKAFAMTNQILV 622

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
            +  V   E+   V+ DA+ +   +   ++        ++  +        +  + ++ +
Sbjct: 623 EKSVVGWKEIEYEVVRDAADNCIAVCNMENIDA--MGVHTGDSVVVAPSQTLNNEEFQML 680

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
           +  A    + +G  G     F   P S + + +E+N +  ++  S     +   GY    
Sbjct: 681 RDRAIKVVRHLGIVGECNIQFALHPTSLEYYVIEVNAR--LSRSS--ALASKATGYPLAF 736

Query: 288 LLLWM 292
           +   +
Sbjct: 737 IAAKI 741


>gi|322616882|gb|EFY13790.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315996572]
 gi|322618121|gb|EFY15013.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-1]
 gi|322625792|gb|EFY22611.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-3]
 gi|322626244|gb|EFY23054.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 495297-4]
 gi|322632657|gb|EFY29402.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-1]
 gi|322639002|gb|EFY35695.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 515920-2]
 gi|322640442|gb|EFY37095.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 531954]
 gi|322644206|gb|EFY40751.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           NC_MB110209-0054]
 gi|322649530|gb|EFY45962.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. OH_2009072675]
 gi|322655437|gb|EFY51745.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str.
           CASC_09SCPH15965]
 gi|322662897|gb|EFY59104.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 81038-01]
 gi|322668082|gb|EFY64241.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MD_MDA09249507]
 gi|322674159|gb|EFY70253.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 414877]
 gi|322683098|gb|EFY79114.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 413180]
 gi|322686792|gb|EFY82770.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 446600]
 gi|323195317|gb|EFZ80497.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609458-1]
 gi|323199209|gb|EFZ84304.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 556150-1]
 gi|323204066|gb|EFZ89081.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 609460]
 gi|323207466|gb|EFZ92414.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 507440-20]
 gi|323217449|gb|EGA02168.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB101509-0077]
 gi|323219957|gb|EGA04430.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB102109-0047]
 gi|323224450|gb|EGA08738.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB110209-0055]
 gi|323231472|gb|EGA15585.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. MB111609-0052]
 gi|323235912|gb|EGA19991.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009083312]
 gi|323240483|gb|EGA24526.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 2009085258]
 gi|323245374|gb|EGA29374.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. 315731156]
 gi|323246739|gb|EGA30711.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2009159199]
 gi|323253595|gb|EGA37423.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008282]
 gi|323255363|gb|EGA39133.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008283]
 gi|323260255|gb|EGA43876.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008284]
 gi|323266847|gb|EGA50333.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008285]
 gi|323269053|gb|EGA52509.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Montevideo str. IA_2010008287]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDSEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|237757185|ref|ZP_04585605.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
 gi|237690654|gb|EEP59842.1| acetyl-CoA carboxylase, biotin carboxylase subunit
           [Sulfurihydrogenibium yellowstonense SS-5]
          Length = 451

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 6/216 (2%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  +   +G   E+    AI E   I +         L+ DK ++++     GVP+ P  
Sbjct: 79  DAVYPG-YGFLAENPTFAAICERSNIKFIGPSSETIKLTGDKAQAREAAKKAGVPIIPGS 137

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +   +  ++    I  P +IK   GG   G+ V   +Q +   L  +           
Sbjct: 138 PPVEELKEALEISSEIGYPVLIKAAAGGGGRGMRVAHNEQELARLLPLAQREAESSFGDR 197

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L      V         ++          P+    +  +   
Sbjct: 198 RVYIEKFIENPKHIEIQILADEFGNVIHLGERECSVQRRHQKLIEESPSPFIDEKIRREM 257

Query: 229 -RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
              A    +A+   G    +F+ D      +++E+N
Sbjct: 258 GEAAVKFAKAVNFTGAGTVEFIVDKNKN-FYFIEMN 292


>gi|296120337|ref|YP_003628115.1| acetyl-CoA carboxylase, biotin carboxylase [Planctomyces
           limnophilus DSM 3776]
 gi|296012677|gb|ADG65916.1| acetyl-CoA carboxylase, biotin carboxylase [Planctomyces
           limnophilus DSM 3776]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/219 (16%), Positives = 74/219 (33%), Gaps = 17/219 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +      A A   DK+ +K++  S  V + P    
Sbjct: 77  AIHPGYGFLSENEHFAEVCRSCNIEFIGPPHEAMAKLGDKVTAKEIAKSAKVNLVPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI-----PLDLLQSSSWNHGD 164
            I      +   + I  P +IK   GG   G+ V + D ++        L    ++N+  
Sbjct: 137 LITDEETAIGIANKIGYPVLIKATAGGGGKGMRVARNDITLKAGLKQAALEAEKAFNNAG 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +   +   +   ++ D   +V  +            K    +    LP  +  ++ 
Sbjct: 197 VYLEKYIENPRHVEVQILADQHGEVLHLWERDCSTQRRHQKMIEESPAPNLPNNVREELC 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           K     A    +  G       +F+ D      +++E+N
Sbjct: 257 K----AAVRLVKTAGYTNAGTCEFIVD-KDNNFYFIEVN 290


>gi|213620892|ref|ZP_03373675.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-2068]
          Length = 375

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 7   GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 66

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 67  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 126 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 183

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 184 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 241

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 242 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 272


>gi|168820701|ref|ZP_02832701.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|205342651|gb|EDZ29415.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. HI_N05-537]
 gi|320085610|emb|CBY95388.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Weltevreden str. 2007-60-3289-1]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|168259848|ref|ZP_02681821.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
 gi|168462591|ref|ZP_02696522.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|194444508|ref|YP_002041148.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|254788781|sp|B4SVD3|PURT_SALNS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|194403171|gb|ACF63393.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL254]
 gi|195634368|gb|EDX52720.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Newport str. SL317]
 gi|205350629|gb|EDZ37260.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Hadar str. RI_05P066]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|168238509|ref|ZP_02663567.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
 gi|194736750|ref|YP_002114918.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|254788785|sp|B4TYQ6|PURT_SALSV RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|194712252|gb|ACF91473.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. CVM19633]
 gi|197288693|gb|EDY28068.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Schwarzengrund str. SL480]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDSEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|168233697|ref|ZP_02658755.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|194471675|ref|ZP_03077659.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|198243510|ref|YP_002215204.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|200390814|ref|ZP_03217425.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|254788780|sp|B5FSQ0|PURT_SALDC RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|194458039|gb|EDX46878.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CVM29188]
 gi|197938026|gb|ACH75359.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. CT_02021853]
 gi|199603259|gb|EDZ01805.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Virchow str. SL491]
 gi|205332267|gb|EDZ19031.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Kentucky str. CDC 191]
 gi|326622952|gb|EGE29297.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Dublin str. 3246]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|167552487|ref|ZP_02346240.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
 gi|205322934|gb|EDZ10773.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA29]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|170724909|ref|YP_001758935.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella woodyi ATCC
           51908]
 gi|169810256|gb|ACA84840.1| acetyl-CoA carboxylase, biotin carboxylase [Shewanella woodyi ATCC
           51908]
          Length = 452

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 11/154 (7%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQY 171
                  I  P ++K   GG   G+ V+     +   +  + +     + +GD  + +  
Sbjct: 149 NQQIAEKIGYPIIVKATAGGGGKGMRVVHHSDELIQAIELTQAEAKAAFANGDLYMEKYL 208

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
                +   V+ D   +   +            K         + +     I K      
Sbjct: 209 QHPRHIEIQVLSDGQGNAIHLGERDCSMQRRHQKVLEEAPALEIDSATRSKIGKLCANAC 268

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 IG RG    +FLF+    + +++E+N +
Sbjct: 269 IE----IGYRGAGTFEFLFEA--GEFYFIEMNTR 296


>gi|34398175|gb|AAQ67177.1| CAD [Empis sp. NCSU-99060925]
          Length = 1291

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A ++   +   I+ +                       V  V+   +P+    
Sbjct: 367 SGSQAIKAFKEEKIQTIIINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPNGVLL 426

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I     +    + I +   + D+    + V+     V    +
Sbjct: 427 TFGGQTALNCGVELERAKIFAKYNVKIMGTPIQSIIETEDRKIFAERVAEIGEKVAPSEA 486

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   +L   +  H +QL+I++
Sbjct: 487 VYSVAEALEAAETLGYPVMARAAFSLGGLGSGFANNQEEL--KILAKQALAHSNQLIIDK 544

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 545 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLTNREYNMLRTT 603

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 604 AIKVIRHFGVVGECNIQYALNPESEQYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 659

Query: 291 WM 292
            +
Sbjct: 660 KL 661


>gi|16765225|ref|NP_460840.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|167993858|ref|ZP_02574951.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168241507|ref|ZP_02666439.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|194448671|ref|YP_002045936.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197247970|ref|YP_002146140.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197262004|ref|ZP_03162078.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|81522616|sp|Q8ZNW5|PURT_SALTY RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|16420419|gb|AAL20799.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. LT2]
 gi|194406975|gb|ACF67194.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL476]
 gi|197211673|gb|ACH49070.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Agona str. SL483]
 gi|197240259|gb|EDY22879.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Saintpaul str. SARA23]
 gi|205328195|gb|EDZ14959.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205339326|gb|EDZ26090.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Heidelberg str. SL486]
 gi|261247054|emb|CBG24873.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. D23580]
 gi|267993861|gb|ACY88746.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 14028S]
 gi|301158404|emb|CBW17911.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. SL1344]
 gi|312912876|dbj|BAJ36850.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. T000240]
 gi|321224526|gb|EFX49589.1| Phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. TN061786]
 gi|323130167|gb|ADX17597.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. 4/74]
 gi|332988777|gb|AEF07760.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhimurium str. UK-1]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|16760834|ref|NP_456451.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. CT18]
 gi|29141475|ref|NP_804817.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56413198|ref|YP_150273.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197362124|ref|YP_002141761.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
 gi|213161272|ref|ZP_03346982.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. E00-7866]
 gi|213426801|ref|ZP_03359551.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. E02-1180]
 gi|213586018|ref|ZP_03367844.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-0664]
 gi|213648164|ref|ZP_03378217.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. J185]
 gi|213857229|ref|ZP_03384200.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. M223]
 gi|289829024|ref|ZP_06546720.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. E98-3139]
 gi|81821473|sp|Q5PIA0|PURT_SALPA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|81853266|sp|Q8Z5X3|PURT_SALTI RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788784|sp|B5BH72|PURT_SALPK RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|25290969|pir||AG0741 phosphoribosylglycinamide formyltransferase 2 [imported] -
           Salmonella enterica subsp. enterica serovar Typhi
           (strain CT18)
 gi|16503131|emb|CAD05634.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi]
 gi|29137102|gb|AAO68666.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Typhi str. Ty2]
 gi|56127455|gb|AAV76961.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. ATCC 9150]
 gi|197093601|emb|CAR59064.1| phosphoribosylglycinamide formyltransferase 2 [Salmonella enterica
           subsp. enterica serovar Paratyphi A str. AKU_12601]
          Length = 392

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRHVITEEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLRELEGEGLNVVPCARATQLTMNREGIRRLAAEELGLPT-STYRFADSEASFH 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           D+   +  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 DAVAAVGFPCIVKPVMSSSGKGQSFIRSAEQLAQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +       +          P ++     K  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGH--RQQDGDYRESWQPQQMSELALKRAQEIARHVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|321475186|gb|EFX86149.1| hypothetical protein DAPPUDRAFT_187511 [Daphnia pulex]
          Length = 2219

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G     I+ +                       V  V+   +P+    
Sbjct: 418 SGSQAIKALKEEGIHSILINPNIATVQTSKGMADKVYFLPITPHYVKQVIRQERPEGILL 477

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPS 110
              G      G +     ILE   +    + I +   S D+    + V+     V    +
Sbjct: 478 TFGGQTALNCGIELNKSGILEKYGVKVLGTPIQSIIDSEDRKLFAEKVAEVGERVAPSAA 537

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+   +  P + +       LG       + +    L  S++ H +QL+I++
Sbjct: 538 AYSFEEALDAAEKLGYPVLARAAYTLGGLGSGFADNPEQLRS--LAQSAFAHSNQLIIDK 595

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   +       ++  +        +    Y  ++  
Sbjct: 596 SLKGW-KEVEYEVVRDAFNNCVTVCNMENVDPLGIHTGESIVVAPSQTLTNREYNMLRTT 654

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S++ + +E+N +  ++  S     +   GY    +  
Sbjct: 655 AIKVVRHLGVVGECNIQYALNPNSQEYYIIEVNAR--LSRSS--ALASKATGYPLAYIAA 710

Query: 291 WM 292
            +
Sbjct: 711 KL 712


>gi|194245488|gb|ACF35353.1| carbamoylphosphate synthetase [Laccophilus pictus]
          Length = 671

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 71  SGSQAIKALQEENVQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIRAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I A   + D+    + ++S    V    +
Sbjct: 131 TFGGQTALNCGVELQRAGVFEKYGVRILGTPIEAIIDTEDRKIFSERITSIGEKVAPSCA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 191 VYSVNEALEAAEVLGYPVMARAAFSLGGLGSGFADNKEELKN--LAQQALAHSNQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AINVIRHFGVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|162139396|ref|YP_280940.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS6180]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 257 QAAVRAAEAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 293


>gi|119512131|ref|ZP_01631223.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
 gi|119463221|gb|EAW44166.1| D-alanine--D-alanine ligase [Nodularia spumigena CCY9414]
          Length = 350

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 47/269 (17%), Positives = 87/269 (32%), Gaps = 22/269 (8%)

Query: 43  GLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
              +     DL              +     L ++        ++ +        +  + 
Sbjct: 75  IQFITAQNIDLVLP----QMFCIPGMTYYRALFDLLKIPCVGNSADIMAIASHKARTKAI 130

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
                                I+PP VIKP+   +SLG+ ++K+       L  +  +  
Sbjct: 131 VAAAGVKVPRGELLRPGDVPTITPPVVIKPVSSDNSLGVALVKEASDYEAALQTAFEYA- 189

Query: 163 GDQLLIEQYVDGIELTC----------------GVMGDASLDVTEIAVPKSDFYSYELKY 206
            + ++      G E+ C                  +      +   A          L +
Sbjct: 190 DEVIVETFIELGREVRCGIIVKDGDLVGLPLEEYKLDPDEKPIRSYADKLQKTDDGNLSF 249

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S+ ++           I K VQ +A + HQA+GCR  S  DF  DP   + ++LE  +  
Sbjct: 250 SAKDNMKSWIVDPSDPITKRVQEVAKMCHQALGCRHYSLFDFRIDPQ-GQPWFLEAGLYC 308

Query: 267 GMTPVSIFPEMAAYAGYSFRELLLWMVED 295
              P S+   MA  AG    EL + ++ +
Sbjct: 309 SFAPKSVISCMAIAAGIPLNELFMTVIHE 337


>gi|600098|emb|CAA86983.1| acetyl CoA carboxylase [Ustilago maydis]
          Length = 2185

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 14/234 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +   LA  K  + F    G  G             I   H+ +     S   ++   
Sbjct: 136 NPRLPESLAASKHKIIFI---GPPGSAMRSLGDKISSTIVAQHADVPCMPWSGTGIKETM 192

Query: 99  VVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +           V     I      ++    I  P +IK  +GG   GI      +    
Sbjct: 193 MSDQGFLTVSDDVYQQACIHTAEEGLEKAEKIGYPVMIKASEGGGGKGIRKCTNGEEFKQ 252

Query: 153 DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                     G  + + +       L   ++ D   +   I            K      
Sbjct: 253 LYNAVLGEVPGSPVFVMKLAGQARHLEVQLLADQYGNAISIFGRDCSVQRRHQKIIEEAP 312

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P     D  + +++ A    + +G       ++L+ P S +  +LE+N +
Sbjct: 313 VTIAPE----DARESMEKAAVRLAKLVGYVSAGTVEWLYSPESGEFAFLELNPR 362


>gi|71021091|ref|XP_760776.1| hypothetical protein UM04629.1 [Ustilago maydis 521]
 gi|46100253|gb|EAK85486.1| hypothetical protein UM04629.1 [Ustilago maydis 521]
          Length = 2185

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 14/234 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +   LA  K  + F    G  G             I   H+ +     S   ++   
Sbjct: 136 NPRLPESLAASKHKIIFI---GPPGSAMRSLGDKISSTIVAQHADVPCMPWSGTGIKETM 192

Query: 99  VVSS------CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           +           V     I      ++    I  P +IK  +GG   GI      +    
Sbjct: 193 MSDQGFLTVSDDVYQQACIHTAEEGLEKAEKIGYPVMIKASEGGGGKGIRKCTNGEEFKQ 252

Query: 153 DLLQSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                     G  + + +       L   ++ D   +   I            K      
Sbjct: 253 LYNAVLGEVPGSPVFVMKLAGQARHLEVQLLADQYGNAISIFGRDCSVQRRHQKIIEEAP 312

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + P     D  + +++ A    + +G       ++L+ P S +  +LE+N +
Sbjct: 313 VTIAPE----DARESMEKAAVRLAKLVGYVSAGTVEWLYSPESGEFAFLELNPR 362


>gi|327194681|gb|EGE61529.1| propionyl-CoA carboxylase protein, alpha subunit [Rhizobium etli
           CNPAF512]
          Length = 669

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/250 (14%), Positives = 77/250 (30%), Gaps = 25/250 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E     A LE   I +      A     DK+ SK+  ++ GV   P  L      
Sbjct: 82  YGFLSERAAFCAELEKQGIVFIGPKPKAIMAMGDKIESKKFANAAGVSTVPGHLGVIEDA 141

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
                I+     P +IK   GG   G+ +      +     ++ S           +++ 
Sbjct: 142 AHAETIAGGIGYPVMIKASAGGGGKGMRIAWNQAEVRDGFERARSEAKSSFGDDRVFIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFL 233
             +    +    L      V         ++  +       P+    +  ++     +  
Sbjct: 202 FVVEPRHIEIQVLADAHGNVVYLGERECSIQRRNQKVAEEAPSPFLDENTRKAMGEQSVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRE 287
             +A+  +     +F+ D   R  ++LE+N +              +       G    +
Sbjct: 262 LARAVEYQSAGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---D 307

Query: 288 LLLWMVEDAS 297
           L+  M+  A+
Sbjct: 308 LVEQMIRVAA 317


>gi|326429453|gb|EGD75023.1| pyruvate carboxylase [Salpingoeca sp. ATCC 50818]
          Length = 1145

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/232 (14%), Positives = 69/232 (29%), Gaps = 28/232 (12%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V  +    K D      +G   E   +    E   I +            DK +++  
Sbjct: 72  DDVVRIAKEQKVDAIHPG-YGFLSESVHLATACEHAGIRFVGPTSKQLQALGDKTQARAA 130

Query: 100 VSSCGVP------VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
             + G+P         S+      ++       P +IK   GG   GI + +  +    +
Sbjct: 131 AINAGLPVVGGSPPLNSLEDAHAFLEGPEGFGYPVIIKAAMGGGGRGIRIARNKEEFNQN 190

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
             +                 G    CG +    L V           +            
Sbjct: 191 FERC--------RSEALVRIGRVCGCGCVCFLCLCVLVCLCVWVVEIA------------ 230

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +P D+ +++ + A    +++  R     +FL D    + +++E+N +
Sbjct: 231 -PAPHLPSDVRQQLCQDAVAIGRSLNYRNAGTVEFLVDTSDGRHYFMEVNPR 281


>gi|293368935|ref|ZP_06615536.1| CobN/magnesium chelatase domain protein [Bacteroides ovatus SD CMC
           3f]
 gi|292635955|gb|EFF54446.1| CobN/magnesium chelatase domain protein [Bacteroides ovatus SD CMC
           3f]
          Length = 1464

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                 ALE  G+ V  +         +  ++PD   N+ HG  G+  
Sbjct: 214 ATGLIEALEKEGYNVYPVQSMTKFMSFIDEVQPDAIINMAHGRMGDKM 261


>gi|260175298|ref|ZP_05761710.1| putative cobalamin biosynthesis-related protein [Bacteroides sp.
           D2]
 gi|315923531|ref|ZP_07919771.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697406|gb|EFS34241.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 1448

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                 ALE  G+ V  +         +  ++PD   N+ HG  G+  
Sbjct: 214 ATGLIEALEKEGYNVYPVQSMTKFMSFIDEVQPDAIINMAHGRMGDKM 261


>gi|238879558|gb|EEQ43196.1| acetyl-CoA carboxylase [Candida albicans WO-1]
          Length = 2271

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            ++    I  P +IK  +GG   GI  +  +++      Q+++   G 
Sbjct: 266 IYAKGCCTSPEDGLEKAKKIGFPVMIKASEGGGGKGIRKVDDEKNFITLYNQAANEIPGS 325

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +   D   L   ++ D       +            +                + 
Sbjct: 326 PIFIMKLAGDARHLEVQLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIARKET 381

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + E++  A    + +G       ++L+     K ++LE+N +
Sbjct: 382 FHEMENAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 423


>gi|237719337|ref|ZP_04549818.1| protoporphyrin IX magnesium chelatase [Bacteroides sp. 2_2_4]
 gi|229451197|gb|EEO56988.1| protoporphyrin IX magnesium chelatase [Bacteroides sp. 2_2_4]
          Length = 1458

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                 ALE  G+ V  +         +  ++PD   N+ HG  G+  
Sbjct: 214 ATGLIEALEKEGYNVYPVQSMTKFMSFIDEVQPDAIINMAHGRMGDKM 261


>gi|254490383|ref|ZP_05103572.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxidans DMS010]
 gi|224464516|gb|EEF80776.1| acetyl-CoA carboxylase, biotin carboxylase [Methylophaga
           thiooxydans DMS010]
          Length = 446

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+  +  +  +   +        +++N+    + +   +  
Sbjct: 149 AREIGYPIIIKAAGGGGGRGMREVHSEAHLLNAIALTKSEARAAFNNDVVYMEKFLENPR 208

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +            +             I  ++   + ++   A 
Sbjct: 209 HIEFQVLSDQHGNAIHLGERDCSMQ----RRHQKVVEEAPAPGITPEMRARMGKICADAC 264

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FL+     + +++E+N +
Sbjct: 265 VRIGYRGAGTFEFLY--QDGEFYFIEMNTR 292


>gi|213965184|ref|ZP_03393382.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           amycolatum SK46]
 gi|213952298|gb|EEB63682.1| phosphoribosylglycinamide formyltransferase 2 [Corynebacterium
           amycolatum SK46]
          Length = 406

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 42/277 (15%), Positives = 84/277 (30%), Gaps = 29/277 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK    A +  G +V   D                    D S +  ++  +KP      +
Sbjct: 27  GKEVTIAFQRLGVEVHAADRYEHAPAHQVAHHAYVLNMSDPSALRDLILQVKPHFIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E        E L++    +          +   +      G+P       + F  
Sbjct: 87  EALATEVLAEVEEDETLDVTVIPTARATQLTMNREGIRRLAAEEVGLPTSRYHFASSFDE 146

Query: 119 DSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS--WNHGDQLLIEQYVDG 174
            +     I  P V+KP+   S  G   ++  + +      + S       ++++E +VD 
Sbjct: 147 FTAAVDEIGFPCVVKPVMSSSGKGQSTLRSPEDVQAAWDYAMSGGRVESGRVIVEGFVDF 206

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
                 +   +    T  A           +          PA +  +     + +A   
Sbjct: 207 DYEITLLTVRSVDPETGEAATWFCEPIGHRQQDGDYVESWQPAAMSENALDNARSVAARI 266

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
             A+G RGI   +        +V++ E++ +P   GM
Sbjct: 267 TNALGGRGIFGVELFV--RGDEVWFSEVSPRPHDTGM 301


>gi|115395960|ref|XP_001213619.1| carbamoyl-phosphate synthase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
 gi|114193188|gb|EAU34888.1| carbamoyl-phosphate synthase, mitochondrial precursor [Aspergillus
           terreus NIH2624]
          Length = 1173

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 119 SGSQALKALKEAGVQSVLINPNIATIQTDHKLADEVYYLPVTPEYVTYVIERERPDGIFL 178

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D         +  +    +
Sbjct: 179 SFGGQTALNLGVQMNRMGTFERYGVKVLGTSIRTLETSEDRDLFAKALNEINIPIAESIA 238

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG       + +     +S +     Q+L+E+
Sbjct: 239 VGTVDEALKAAEEVGYPIIVRSAYALGGLGSGFANNPEELKNLASRSLTLAP--QILVEK 296

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G             D   I V   + +     ++  +        +  + Y  ++  
Sbjct: 297 SLRGW-KEVEYEVVRDADNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 355

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 356 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 407


>gi|83649323|ref|YP_437758.1| pyruvate carboxylase subunit A [Hahella chejuensis KCTC 2396]
 gi|83637366|gb|ABC33333.1| acetyl-CoA carboxylase, biotin carboxylase [Hahella chejuensis KCTC
           2396]
          Length = 490

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/143 (14%), Positives = 47/143 (32%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG   GI     ++ +  +  +  S         E +++   +    + 
Sbjct: 168 IGYPVMLKATSGGGGRGIRRCNDEKDLRSNYQRVISEATKAFGRAEVFLEKCIVDPRHIE 227

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRG 242
              L      V         ++  +     + P+     +    V  LA    + +G   
Sbjct: 228 VQVLADAHGGVVHLYERDCSIQRRNQKLIELAPSPQLTNEQRHYVGELAVKVAREVGYEN 287

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL D      +++E+N +
Sbjct: 288 AGTVEFLLD-HDGSFYFMEMNTR 309


>gi|31543464|ref|NP_036876.2| pyruvate carboxylase, mitochondrial precursor [Rattus norvegicus]
 gi|146345499|sp|P52873|PYC_RAT RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|1040974|gb|AAC52668.1| pyruvate carboxylase [Rattus norvegicus]
 gi|55716041|gb|AAH85680.1| Pcx protein [Rattus norvegicus]
 gi|149061986|gb|EDM12409.1| Pyruvate carboxylase, isoform CRA_a [Rattus norvegicus]
 gi|149061987|gb|EDM12410.1| Pyruvate carboxylase, isoform CRA_a [Rattus norvegicus]
          Length = 1178

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTNSPINSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|68474502|ref|XP_718624.1| hypothetical protein CaO19.7466 [Candida albicans SC5314]
 gi|46440402|gb|EAK99708.1| hypothetical protein CaO19.7466 [Candida albicans SC5314]
          Length = 2271

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           +            ++    I  P +IK  +GG   GI  +  +++      Q+++   G 
Sbjct: 266 IYAKGCCTSPEDGLEKAKKIGFPVMIKASEGGGGKGIRKVDDEKNFITLYNQAANEIPGS 325

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +   D   L   ++ D       +            +                + 
Sbjct: 326 PIFIMKLAGDARHLEVQLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIARKET 381

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + E++  A    + +G       ++L+     K ++LE+N +
Sbjct: 382 FHEMENAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 423


>gi|332291547|ref|YP_004430156.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Krokinobacter diaphorus 4H-3-7-5]
 gi|332169633|gb|AEE18888.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Krokinobacter diaphorus 4H-3-7-5]
          Length = 483

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 36/231 (15%), Positives = 79/231 (34%), Gaps = 7/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  V   L  D      +G   E+      +   ++ +      A  +   K+ +K+ 
Sbjct: 66  DKIIKVAQELNVDAIHPG-YGFLSENSAFAKAVTEAQMIFIGPEAHAIEIMGSKLAAKEA 124

Query: 100 VSSCGVPVCPSILVNRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
           V +  +P+ P I      ++        I  P +IK   GG   G+ V++KD  +   + 
Sbjct: 125 VKAYDIPMVPGIDEAITDVEKAKAIAAEIGYPILIKASAGGGGKGMRVVEKDSELASQMS 184

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S           +++    +   +    +      V         ++          
Sbjct: 185 TAISEATAAFGDGSVFIEKYVASPRHIEIQVMADNHGNVIHLFERECSIQRRHQKVVEEA 244

Query: 216 PAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           P+ +    + +E+ + A    +A   RG    +FL D      ++LE+N +
Sbjct: 245 PSVVLTPQLREEMGQAAIKVAKACNYRGAGTVEFLLDDQLN-FYFLEMNTR 294


>gi|329765848|ref|ZP_08257414.1| ATP binding carbamoyl-phosphate synthase, L chain [Candidatus
           Nitrosoarchaeum limnia SFB1]
 gi|329137691|gb|EGG41961.1| ATP binding carbamoyl-phosphate synthase, L chain [Candidatus
           Nitrosoarchaeum limnia SFB1]
          Length = 495

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 35/279 (12%), Positives = 76/279 (27%), Gaps = 36/279 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----------------------------VGLVLAHL 49
                   +  G K   +  D                               +   +   
Sbjct: 14  ALRVIKTCKALGIKTVAVYSDEDYNSLHVKQATEAYHIGEAAPAKSYLNQEKILETILSS 73

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+       E  +I +     ++  L  DKM+ K  +    VP  P
Sbjct: 74  GADAIHPG-YGFLSENSDFTGKCEKNKINFIGPSSVSMELCGDKMQCKAAMLKAKVPTVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                +      +   + IS P ++K + GG   GI ++  D+ +       +S +    
Sbjct: 133 GSPGLVKDVEEALKIANDISYPVLLKSVFGGGGRGIRLVNNDKELREGFETVTSESISAV 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
                 V+        +                     ++  +       P   +     
Sbjct: 193 GKSAIIVEKFLQKTRHIEYQMARDKHGNAVHIFERECSIQRRNQKLIEQTPSPVVDQKTR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
             +  L   A +A+    +  ++F     + + +++EIN
Sbjct: 253 DRIGELVVKASEAVDYTNLGTAEF-LRADNGEFYFIEIN 290


>gi|146400063|gb|ABQ28729.1| acetyl-CoA carboxylase [Amylomyces rouxii]
          Length = 2216

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI ++K   +      Q      G  + I +   +   L  
Sbjct: 220 AEKIGFPVMIKASEGGGGKGIRMVKDGSNFAQLFAQVQGEIPGSPIFIMKLAGNARHLEV 279

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                D+++++++ A    + +G
Sbjct: 280 QLLADQYGNAISLFGRDCSVQ----RRHQKIIEEAPVTIAKPDVFEQMEKAAVRLGKLVG 335

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     + ++LE+N +
Sbjct: 336 YVSAGTVEYLYSHHDDQFYFLELNPR 361


>gi|78357809|ref|YP_389258.1| phosphoribosylglycinamide formyltransferase 2 [Desulfovibrio
           desulfuricans subsp. desulfuricans str. G20]
 gi|123768737|sp|Q30XN3|PURT_DESDG RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|78220214|gb|ABB39563.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Desulfovibrio desulfuricans subsp. desulfuricans str.
           G20]
          Length = 393

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/269 (12%), Positives = 75/269 (27%), Gaps = 29/269 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A      G +V  +D                       ++  ++A  +PD     +
Sbjct: 24  GKEVAIEAMRLGAEVVAVDRYAGAPAMQVAHRSHVISMLDADALRRLIAEERPDFVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +         L  +P   +  L       +  + + +                  
Sbjct: 84  EAIATDVLEELESDSLTVVPTARAARLTMNREGIRRLAAEELGLRT-SPYRFAQTEDEYR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQYVDGIEL 177
            +   +  P V+KP+   S  G  V++    I      + S    G   +I +     + 
Sbjct: 143 RAVEELGMPCVVKPVMSSSGKGQSVVRSADDIADAWTYAQSGGRAGGGRVIVESFVDFDY 202

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++     + T    P                    P  +     ++ + +A    QA
Sbjct: 203 EITLLTVRHCNGTSFCEPIGHRQE-----DGDYRQSWQPQPMSAAALEQARHMAQAVTQA 257

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +G  G+   +         V++ E++ +P
Sbjct: 258 LGGYGLFGVELFI--KGDTVWFSEVSPRP 284


>gi|330881156|gb|EGH15305.1| urea amidolyase-like protein [Pseudomonas syringae pv. morsprunorum
           str. M302280PT]
          Length = 93

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 34  KAVNYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVGW 82

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 83  MVQLAAGD 90


>gi|307111170|gb|EFN59405.1| hypothetical protein CHLNCDRAFT_56737 [Chlorella variabilis]
          Length = 1868

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 30/187 (16%), Positives = 61/187 (32%), Gaps = 5/187 (2%)

Query: 80  THSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                    +++D       V    V     I      ++  + I  P ++K   GG   
Sbjct: 190 PTIPWSGDGVTVDYAACAGGVIPADVYDRACIHNLGEALECCNRIGYPVMLKASWGGGGK 249

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTCGVMGDASLDVTEIAVPKSD 198
           GI  +  D  +     Q      G  +   +       L   ++ D   +V  +      
Sbjct: 250 GIRKVMSDDDVRRLFKQVQGEVPGSPIFAMKLAPQSRHLEVQLLADRHGNVCSVFSRDCS 309

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
                 K          P     ++  +++R A    +++G  G +  +FL+   SR+  
Sbjct: 310 VQRRHQKIVEEGPVVAAPP----EVLADMERCARALARSVGYMGAATVEFLYIMDSRQYC 365

Query: 259 WLEINVQ 265
           +LE+N +
Sbjct: 366 FLELNPR 372


>gi|326314894|ref|YP_004232566.1| methylcrotonoyl-CoA carboxylase [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323371730|gb|ADX43999.1| Methylcrotonoyl-CoA carboxylase [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 663

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 33/219 (15%), Positives = 67/219 (30%), Gaps = 7/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+           + +      A     DK  +K+++   G+P  P  
Sbjct: 81  DAVHPG-YGFLAENADFAEACRAAGLVFVGPSPEAIRAMGDKAGAKRLMMDAGIPCIPGY 139

Query: 112 LVNRFTM----DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
             +        D    I  P +IK   GG   G+ +++  +  P  L  + S        
Sbjct: 140 QGSDQDSGRLADEAARIGYPVMIKATAGGGGRGMRLVRSAEEFPDLLRSARSEARNAFGD 199

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKE 226
               ++   +    +                     ++          P+  +   +   
Sbjct: 200 DTVILERAIVEPRHVEIQVFADRHGQAVHLGERDCSVQRRHQKVIEEAPSPAVTPGLRAR 259

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +AIG  G    +FL D      +++E+N +
Sbjct: 260 MGATAVQAARAIGYEGAGTLEFLLDRE-GHYYFMEMNTR 297


>gi|56416930|ref|YP_154004.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. St. Maries]
 gi|56388162|gb|AAV86749.1| propionyl-CoA carboxylase alpha chain precursor [Anaplasma
           marginale str. St. Maries]
          Length = 662

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H   G   E+      L    + +    
Sbjct: 50  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  +    +      I+     P +IK   GG   
Sbjct: 110 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 169

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V+K  + +    + +++           +++        +    +      V     
Sbjct: 170 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 229

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++ ++       P+       ++          + +    +   +F+ D    + +
Sbjct: 230 RECSIQRNNQKVIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK-RFY 288

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +LE+N       P      +   +         +L+  M++ A
Sbjct: 289 FLEMNTRLQVEHP---VTELVTRI---------DLVEEMIKIA 319


>gi|83593770|ref|YP_427522.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodospirillum
           rubrum ATCC 11170]
 gi|83576684|gb|ABC23235.1| Acetyl-CoA carboxylase, biotin carboxylase [Rhodospirillum rubrum
           ATCC 11170]
          Length = 445

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 27/221 (12%), Positives = 68/221 (30%), Gaps = 18/221 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +++     +         L  DK+ +KQ     G+P  P    
Sbjct: 77  AIHPGYGFLSENADFAEMVQDHGFTFIGPSPRHIRLMGDKITAKQAALEAGLPCVPGSAG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +        P + K   GG   G+ V      +      + +     + + +
Sbjct: 137 AVTSEEEGLKVAAAFGYPVLFKATAGGGGRGMKVATGPHDLGEAFRTARTEAQAAFGNSE 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +   +   +   V+GD       +            +             +  +  
Sbjct: 197 VYMEKYLQNPRHIEVQVLGDNYGGAVYLGERDCSLQ----RKHQKVLEEARSPALNDEAR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  +A  A + +G       +FL++    + +++E+N +
Sbjct: 253 ARIGEIARRAVERLGYSNAGTMEFLYEE--GEFYFIEMNTR 291


>gi|320588234|gb|EFX00709.1| acetyl-carboxylase [Grosmannia clavigera kw1407]
          Length = 2409

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/162 (13%), Positives = 54/162 (33%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V +   +   +  ++  H I  P +IK  +GG   GI     ++        ++S   G 
Sbjct: 345 VYMKGCVNSWQEGLEKAHQIGFPVMIKASEGGGGKGIRKASSEEGFEQLYKAAASEIPGS 404

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +   +   L   ++ D   +   +            +                  
Sbjct: 405 PIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIANQTT 460

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++ ++  A    + +G       ++L+     K ++LE+N +
Sbjct: 461 FRAMEEAAVRLGKLVGYVSAGTVEYLYSHSDNKFYFLELNPR 502


>gi|212703300|ref|ZP_03311428.1| hypothetical protein DESPIG_01343 [Desulfovibrio piger ATCC 29098]
 gi|212673260|gb|EEB33743.1| hypothetical protein DESPIG_01343 [Desulfovibrio piger ATCC 29098]
          Length = 1233

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 4/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   GI  I  +  +     ++S+           +V+        +
Sbjct: 161 EIGLPIMLKAEGGGGGRGIFAIHNEAELEDAFFKASTMAQASFGNPRLFVEKFLADVRHI 220

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIG 239
               +      V   D     ++ +      + P+  P     + ++++  A    +A+G
Sbjct: 221 EIQVIADMYGNVFAFDERDCTVQRNHQKLVEITPSPWPGMTRQLREQLKDYARRLVRAVG 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++  +FL  P     + +E+N +
Sbjct: 281 YHSLATVEFLVTP-DGTPYMIEVNTR 305


>gi|163745964|ref|ZP_02153323.1| propionyl-CoA carboxylase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
 gi|161380709|gb|EDQ05119.1| propionyl-CoA carboxylase, alpha subunit [Oceanibulbus indolifex
           HEL-45]
          Length = 681

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 52/182 (28%), Gaps = 21/182 (11%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV 181
           + I  P ++K   GG   G+ +   D+        S +           +++        
Sbjct: 149 NEIGYPVMLKASAGGGGKGMRIAWNDEEAREGFQSSKNEAANSFGDDRIFIEKFVTQPRH 208

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGC 240
           +    L                ++  +       P+    +  ++     A    QA+G 
Sbjct: 209 IEIQVLCDAHGNGIYLGERECSIQRRNQKVVEEAPSPFLDEATRKAMGEQAVALAQAVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
                 +F+ D      ++LE+N +              +       G    +L+  M+ 
Sbjct: 269 TSAGTVEFIVDGNKD-FYFLEMNTR----------LQVEHPVTELITGV---DLVEQMIR 314

Query: 295 DA 296
            A
Sbjct: 315 VA 316


>gi|150399873|ref|YP_001323640.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           vannielii SB]
 gi|171460842|sp|A6URA6|PURT_METVS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|150012576|gb|ABR55028.1| phosphoribosylglycinamide formyltransferase 2 [Methanococcus
           vannielii SB]
          Length = 388

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 73/248 (29%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+  S  +  V+   KPDL    +     +            +P  ++  L   
Sbjct: 52  HRYHVIDMKDSGSLRAVIEREKPDLIVPEIEAINTDTLKEMETEGYHVVPTANAAKLTMD 111

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  + + +                  ++   I  P +IKP+   S  G   +K + 
Sbjct: 112 REGIRRLASEKLGLRT-AKYEFADSLDELKEAVKRIGIPCIIKPIMSSSGKGQSTVKSEF 170

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            I      + S   G          G ++      +   ++T +    +    +      
Sbjct: 171 DIEKSWDYAKSATRG---------IGTKVIVEEFVNFDYEITLLTARTAFGTKFCEPIGH 221

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q +A      +G  GI   +     +  +V + E++
Sbjct: 222 IQIDGDYHESWQPHPMCSPTKAKAQEVAKKITDELGGYGIFGVELFI--MDDEVIFSEVS 279

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 280 PRPHDTGM 287


>gi|49474483|ref|YP_032525.1| carbamoyl phosphate synthase large subunit [Bartonella quintana
           str. Toulouse]
 gi|49239987|emb|CAF26401.1| Carbamoyl-phosphate synthase large chain [Bartonella quintana str.
           Toulouse]
          Length = 1161

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 58/345 (16%), Positives = 101/345 (29%), Gaps = 66/345 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           +A+L GG +         G+           A AL DAGF+   I         D D S 
Sbjct: 621 IAILGGGPN-------RIGQGIEFDYCCCHAAFALRDAGFEAIMINCNPETVSTDYDTSD 673

Query: 43  GLVLAHLKPDLAFNVLH----------------GNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T    + 
Sbjct: 674 RLYFESLTAEDVIAILETEQQKGELVGVIVQFGGQTPLKLAKTLEKHNIPILGTSPDAID 733

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +      +   P          T    H +  P V++P        + +I+ 
Sbjct: 734 LAEDRDRFQKLLFKLNLTQPKNGIAHSVEQTHLIAHELGFPLVVRPSYVLGGRAMQIIRD 793

Query: 147 DQSIPLDLLQSSS---------WNHGDQLLIEQYVDGIE---------LTCGVMGDASLD 188
           ++S+   LL++               D++     +                 V  D   D
Sbjct: 794 ERSLQNYLLENIPELVPEDIKARYPNDKMSQLNTLLDKNPLLFDTYLTEAIEVDVDCLCD 853

Query: 189 VTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSD 247
             E  V     +  E    S +S   LP +     +  E++R      QA+  RG+    
Sbjct: 854 GKETLVVGIMEHIEEAGIHSGDSACSLPVRTLSHKLVIELERQTKALAQALHVRGLMNVQ 913

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +        ++ LE+N +   T     P +A   G    ++   +
Sbjct: 914 YAV--KDDTIYVLEVNPRASRT----VPFVAKAIGRPIAKMATRI 952



 Score = 39.5 bits (90), Expect = 0.63,   Method: Composition-based stats.
 Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFN 56
          SG     AL++ G+++  +         D D              V  ++AH +PD    
Sbjct: 29 SGTQACKALKEEGYRIILVNSNPATIMTDPDLADATYIEPITPEIVAQIIAHERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 39.1 bits (89), Expect = 0.80,   Method: Composition-based stats.
 Identities = 20/167 (11%), Positives = 50/167 (29%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          + +    +   ++LIE+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFYEIIERGLEASPTTEVLIEESVLGWKEYEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KNDNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQCMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P + ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAINPENGRLIVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|293381990|ref|ZP_06627951.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus 214-1]
 gi|312977043|ref|ZP_07788792.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus CTV-05]
 gi|290921446|gb|EFD98487.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus 214-1]
 gi|310896371|gb|EFQ45436.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Lactobacillus
           crispatus CTV-05]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 82/277 (29%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHLKPDL-----------AFNVL--------- 58
              +L++ G K   I       S+ + LA     +             N+L         
Sbjct: 17  IIRSLKEMGIKTVAIYSTADRESLHVQLADEAVCVGGPQPTESYLNIKNILAAAVGIGAQ 76

Query: 59  -----HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
                +G   E+     + E   + +            +K  ++Q++ +  VPV P    
Sbjct: 77  AIHPGYGFLSENAEFAQMCEDCGLTFIGPKAETIDQMGNKEHARQLMMAHNVPVTPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I            I  P +IK   GG   GI  +     +   L  + S    D     
Sbjct: 137 VIKNAEEAKKIAAQIGYPVLIKATAGGGGKGIRQVTDPSQMAEALAAAQSEAKNDFGDDR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++ +      +                     L+ +        P  +  +   KE+ 
Sbjct: 197 MYLEKVMQNVKHIEVQIFRDMYGHTVYFPERDCSLQRNKQKVLEESPCDLITENERKELG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A         +FL D      +++E+N +
Sbjct: 257 EVAVKAARAANYVNTGTIEFLMD-QDHHFYFMEMNTR 292


>gi|257789952|ref|YP_003180558.1| acetyl-CoA carboxylase, biotin carboxylase [Eggerthella lenta DSM
           2243]
 gi|317489397|ref|ZP_07947909.1| acetyl-CoA carboxylase [Eggerthella sp. 1_3_56FAA]
 gi|257473849|gb|ACV54169.1| acetyl-CoA carboxylase, biotin carboxylase [Eggerthella lenta DSM
           2243]
 gi|316911504|gb|EFV33101.1| acetyl-CoA carboxylase [Eggerthella sp. 1_3_56FAA]
          Length = 449

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 23/251 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +    +I +            +K ++++ +   GVPV P     +   
Sbjct: 82  YGFLSENSTFAKLCRENDIVFIGPAPEVLDRMGNKSQARKTMMEAGVPVVPGTKEPVHHP 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ +   +         +   + G       Y++ 
Sbjct: 142 EEALAMAREIGWPIMIKASSGGGGKGMRISHDEHDFSEQFSIAQRESVGAFGDNTMYLER 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
             L+   +    +  T   V         ++ +        P+ +  + +  E+   A  
Sbjct: 202 CVLSPRHVEVQIIADTYGTVVALGERDCSVQRNHQKMIEESPSPVMTERVRDEMLEAAVR 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFREL 288
           A QA+G       +FL D      +++E+N       P         EM    G    +L
Sbjct: 262 AAQAVGYTSAGTIEFLLDDKLN-YYFMEMNTRIQVEHP-------VTEM--VTG---TDL 308

Query: 289 LLWMVEDASCL 299
           +  M+  A+  
Sbjct: 309 VEEMIRVAAGD 319


>gi|194016801|ref|ZP_03055414.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus pumilus ATCC
           7061]
 gi|194011407|gb|EDW20976.1| acetyl-CoA carboxylase, biotin carboxylase [Bacillus pumilus ATCC
           7061]
          Length = 449

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +      +      Y++       
Sbjct: 148 AASIGYPVIIKATAGGGGKGIRVARTEEELINGVTITQQEAAQNFGNPGVYLEKFIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+     DI +++   A  A +A+ 
Sbjct: 208 HVEIQVLADQHGNTIHLGERDCSIQRRMQKLLEETPSPALNADIREQMGEAAVKAAEAVE 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D    K +++E+N +
Sbjct: 268 YTGAGTVEFIYDYNEEKFYFMEMNTR 293


>gi|194097643|ref|YP_002000681.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|240013356|ref|ZP_04720269.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           DGI18]
 gi|240079938|ref|ZP_04724481.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA19]
 gi|240114891|ref|ZP_04728953.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID18]
 gi|240117095|ref|ZP_04731157.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID1]
 gi|240120429|ref|ZP_04733391.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID24-1]
 gi|240122731|ref|ZP_04735687.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           PID332]
 gi|240127433|ref|ZP_04740094.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           SK-93-1035]
 gi|260441293|ref|ZP_05795109.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           DGI2]
 gi|268596078|ref|ZP_06130245.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae FA19]
 gi|268600548|ref|ZP_06134715.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID18]
 gi|268602781|ref|ZP_06136948.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID1]
 gi|268681330|ref|ZP_06148192.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID332]
 gi|268685807|ref|ZP_06152669.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291044649|ref|ZP_06570358.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae DGI2]
 gi|193932933|gb|ACF28757.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           NCCP11945]
 gi|268549866|gb|EEZ44885.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae FA19]
 gi|268584679|gb|EEZ49355.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID18]
 gi|268586912|gb|EEZ51588.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID1]
 gi|268621614|gb|EEZ54014.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae PID332]
 gi|268626091|gb|EEZ58491.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-93-1035]
 gi|291011543|gb|EFE03539.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae DGI2]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.008,   Method: Composition-based stats.
 Identities = 38/234 (16%), Positives = 79/234 (33%), Gaps = 12/234 (5%)

Query: 41  SVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           ++  ++A  +   A + +H   G   E+      +E     +         L  DK+ +K
Sbjct: 62  NIPAIIAAAEVTFA-DAVHPGYGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAK 120

Query: 98  QVVSSCGVPVCPSIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
             + + GVP  P         +   +     +  P +IK   GG   G+ V++K + +  
Sbjct: 121 HAMIAAGVPCVPGSDGALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQ 180

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            +  + +           Y++        +    L                L+       
Sbjct: 181 SVEMTKAEAGAAFGNPMVYMERYLQRPRHVEIQVLADEHGNAVYLAERDCSLQRRHQKVI 240

Query: 213 HVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              PA    +  ++    A   A + IG RG    +FL+     + F++E+N +
Sbjct: 241 EEAPAPFIDEEARKKIGKACTDACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|328802667|ref|NP_001178322.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Bos taurus]
          Length = 2225

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+    S+       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFASRMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAYALGGLGSGFASNKEELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|308048190|ref|YP_003911756.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ferrimonas balearica DSM 9799]
 gi|307630380|gb|ADN74682.1| biotin carboxylase ;acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [Ferrimonas balearica DSM 9799]
          Length = 449

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 82/281 (29%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL---------------AHLKPDLAF------ 55
                 A  + G K   +    DR +  VL               ++L            
Sbjct: 14  ALRILRACRELGIKTVAVHSTADRELKHVLLADETICIGNAPATESYLNIPAIIAAAEVT 73

Query: 56  --NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  DAIAIHPGYGFLAENADFAEQVENSGFIFIGPTADVIRLMGDKVSAINSMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                   N   +     I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLTEDNTRNIQIAKRIGYPVIIKAAGGGGGRGMRVVRSEAELLKSIELTKAEAGAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   + +          ++          PA    +  +
Sbjct: 194 GNDTVYMEKFLENPRHIEVQVLADGQGSAIHLGERDCSMQRRHQKVVEEAPAPGITEEMR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +        A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 KFIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|297480522|ref|XP_002691546.1| PREDICTED: carbamoyl-phosphate synthetase 2, aspartate
           transcarbamylase, and dihydroorotase [Bos taurus]
 gi|296482376|gb|DAA24491.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Bos taurus]
          Length = 2190

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+    S+       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFASRMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAYALGGLGSGFASNKEELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|147677510|ref|YP_001211725.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
 gi|83699282|dbj|BAE54379.1| pyruvate carboxylase ATP-binding subunit [Pelotomaculum
           thermopropionicum]
 gi|146273607|dbj|BAF59356.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+   + +   +  + +         E Y++   +   
Sbjct: 148 AGEIGYPVIIKASAGGGGRGMRVVHGREELENAIGTARAEAQAAFGSGEVYLEKYLVEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   +         ++  +       P+     ++ + +   A  A +A+G
Sbjct: 208 HIEFQVLGDTHGNIIHLGERDCSIQRRNQKVIEEAPSTALTPELRERMGETAVRAARAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  S   +++E+N +
Sbjct: 268 YYSAGTVEFLVDKFSN-FYFMEMNTR 292


>gi|301301202|ref|ZP_07207358.1| carbamoyl-phosphate synthetase large chain, oligomerisation domain
           protein [Lactobacillus salivarius ACS-116-V-Col5a]
 gi|300851201|gb|EFK78929.1| carbamoyl-phosphate synthetase large chain, oligomerisation domain
           protein [Lactobacillus salivarius ACS-116-V-Col5a]
          Length = 643

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 96/317 (30%), Gaps = 37/317 (11%)

Query: 15  SLSSGK--ACASALEDAGFKVSQIDV--------------------DRSVGLVLAHLKPD 52
           S +SG   A    L   G+K   +                        ++  ++   +PD
Sbjct: 15  SYNSGALSAIY-TLSKQGYKPILVAPRINESQMSELLDEFYSMKMTADNLADIVTKTRPD 73

Query: 53  LAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               +  G  G +  ++           ++I  T    L+S    +K  +         P
Sbjct: 74  AIIPIFGGQTGINACIKLAKDELLSALNVKILGTDLASLSSMFDREKFSNLLNEERIPTP 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +   I      +D     + P +++     +  G  +    + + +++ ++   +     
Sbjct: 134 ISKKITNIEEAIDFASEYNYPVIVRASATTNKPGGDLCNNRRELIVNVNRAFEESPISNC 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LIE  V G      +          I V   +       +S+ +        +    +++
Sbjct: 194 LIEASVTG-YKELELEVVRDSYDNCILVGAFENIDAVGIHSADSMVVAPIQTLDDQEFQK 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++ ++    +     G       FD L    + LE+N  P     S+         Y   
Sbjct: 253 LRTVSLRLARMFNIVGSCNIRIAFDSLRDTYYILEMN--PSFNRSSVLISAITA--YPLA 308

Query: 287 ELLLWM---VEDASCLR 300
           +++  +   +   +  R
Sbjct: 309 DIITKISLGIRLDAIRR 325


>gi|227890827|ref|ZP_04008632.1| possible carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
 gi|227867236|gb|EEJ74657.1| possible carbamoyl phosphate synthase large subunit [Lactobacillus
           salivarius ATCC 11741]
          Length = 643

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 40/317 (12%), Positives = 96/317 (30%), Gaps = 37/317 (11%)

Query: 15  SLSSGK--ACASALEDAGFKVSQIDV--------------------DRSVGLVLAHLKPD 52
           S +SG   A    L   G+K   +                        ++  ++   +PD
Sbjct: 15  SYNSGALSAIY-TLSKQGYKPILVAPRINESQMSELLDEFYSMKMTADNLADIVTKTRPD 73

Query: 53  LAFNVLHGNFGEDGLVQA------ILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVP 106
               +  G  G +  ++           ++I  T    L+S    +K  +         P
Sbjct: 74  AIIPIFGGQTGINACIKLAKDGLLSALNVKILGTDLASLSSMFDREKFSNLLNEERIPTP 133

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +   I      +D     + P +++     +  G  +    + + +++ ++   +     
Sbjct: 134 ISKKITNIEEAIDFASEYNYPVIVRASATTNKPGGDLCNNRRELIVNVNRAFEESPISNC 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LIE  V G      +          I V   +       +S+ +        +    +++
Sbjct: 194 LIEASVTG-YKELELEVVRDSYDNCILVGAFENIDAVGIHSADSMVVAPIQTLDDQEFQK 252

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++ ++    +     G       FD L    + LE+N  P     S+         Y   
Sbjct: 253 LRTVSLRLARMFNIVGSCNIRIAFDSLRDTYYILEMN--PSFNRSSVLISAITA--YPLA 308

Query: 287 ELLLWM---VEDASCLR 300
           +++  +   +   +  R
Sbjct: 309 DIITKISLGIRLDAIRR 325


>gi|91217446|ref|ZP_01254405.1| carbamoyl-phosphate synthase, large subunit [Psychroflexus torquis
           ATCC 700755]
 gi|91184331|gb|EAS70715.1| carbamoyl-phosphate synthase, large subunit [Psychroflexus torquis
           ATCC 700755]
          Length = 950

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/255 (12%), Positives = 79/255 (30%), Gaps = 13/255 (5%)

Query: 27  EDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           +   F+         +  ++ H  P+     L G        +     ++I  T    L 
Sbjct: 623 DKLYFEPVFW---EHIYDIIKHENPEGVIVQLGGQTALKLAEKLSRYGVKILGTSFESLD 679

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A            ++   P           +     +  P +++P       G+ ++  
Sbjct: 680 LAEDRGSFSKLLQQNNIPYPEFGVAETADEALALAEELDFPILVRPSYVLGGQGMKIVIN 739

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
            + +   ++        ++LL++ Y+DG IE     + D         +   +       
Sbjct: 740 KKELETHVVDLLMKMPNNKLLLDHYLDGAIEAEADAICDGEDVYIIGIMEHIEPCG---V 796

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +S  ++  + P  +   + ++++        ++   G+    F        V+ +E N +
Sbjct: 797 HSGDSNALLPPFNLGDLVLEQIKDHTKKIALSLNTVGLLNVQFAI--KDDNVYIIEANPR 854

Query: 266 PGMTPVSIFPEMAAY 280
              T     P +A  
Sbjct: 855 ASRT----VPFIAKA 865


>gi|53713459|ref|YP_099451.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           YCH46]
 gi|81608482|sp|Q64UB2|PURT_BACFR RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|52216324|dbj|BAD48917.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides fragilis
           YCH46]
          Length = 388

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/244 (13%), Positives = 76/244 (31%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  ++   +PD+    +      + L     E +++  +   +  +  
Sbjct: 44  ECEVFDMLNGEELERIVKKHRPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNYTMN 102

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                        ++  +I  P V+KPL   S  G  ++K    
Sbjct: 103 RKAIRDLAAKELGLKTAKYYYAKSLEELKEAAEIIGFPCVVKPLMSSSGKGQSLVKSAAE 162

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        + + GD  +L+IE+++        +        T    P            
Sbjct: 163 LEHAWEYGCNGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 222

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F     +  V++ E++ +P 
Sbjct: 223 SFQPAHIDPAHLKEAEDM-----AEKVTRALTGAGLWGVEFFLSHENG-VYFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|325120193|emb|CBZ55747.1| hypothetical protein NCLIV_061720 [Neospora caninum Liverpool]
          Length = 3385

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 50/145 (34%), Gaps = 5/145 (3%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY-VDGIELT 178
               I  P +IK  +GG   GI  +   + +     Q  +   G  + + +   +   L 
Sbjct: 379 CCAKIGYPVMIKASEGGGGKGIRRVAGPEEVADAYRQVVNEVKGSPVFVMRMVSECRHLE 438

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D S     +            +              P  + ++++  A     A+
Sbjct: 439 VQLLADKSGRCVSLGSRDCSIQ----RRCQKIIEEGPVVAAPPAVVRQMEDAACRMAMAV 494

Query: 239 GCRGISRSDFLFDPLSRKVFWLEIN 263
           G       +FL+DP + +  +LE+N
Sbjct: 495 GYENAGTCEFLYDPNTHQFAFLEVN 519


>gi|313201202|ref|YP_004039860.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
 gi|312440518|gb|ADQ84624.1| acetyl-CoA carboxylase, biotin carboxylase [Methylovorus sp. MP688]
          Length = 449

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 33/217 (15%), Positives = 73/217 (33%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+  +  I     I +            DK++++  +   G+P  P    
Sbjct: 53  ALHPGYGFLSENPELAEICARRGIKFIGPDAKVIRQMGDKIQARNAMIKAGIPCVPGSNG 112

Query: 114 N----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           N             I  P ++K   GG   GI     ++ +  +  +  S         E
Sbjct: 113 NLADLEEARTLARKIGYPVMLKATNGGGGRGIRRCNDEKELLSNYDRVISEASKAFGKPE 172

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++   +    +    +  +   V         ++  +     + P+        + + 
Sbjct: 173 VFLEKCVVNPKHIEVQIMADSHGNVIHLFERDCSIQRRNQKLIEIAPSPQLSNAQREYIG 232

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +LA  A +A+G +     +FL D      +++E+N +
Sbjct: 233 KLAVKAAKAVGYKNAGTVEFLLD-SDNSFYFMEMNTR 268


>gi|312136984|ref|YP_004004321.1| hypothetical protein Mfer_0760 [Methanothermus fervidus DSM 2088]
 gi|311224703|gb|ADP77559.1| protein of unknown function DUF201 [Methanothermus fervidus DSM
           2088]
          Length = 367

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/247 (17%), Positives = 89/247 (36%), Gaps = 14/247 (5%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               D    ++ G       V  + E LE  Y    + ++  +      K         +
Sbjct: 59  KEDVDAVVPLI-GVDEPLIGVAKMKEKLEKDYGIPVVASNLHATSIAVDKFKTKIFFKKM 117

Query: 108 CPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
                  +   +    ++ P V+K  KG +  G++V      I   L +         +L
Sbjct: 118 NIRTPKYKIIKEPPSEVTKPVVLKNKKGQAGTGVVVTNSKDEITEYLKKY------GVVL 171

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV 227
           +E++++GIE++  V+      +  + V      +       L      PA+I     ++V
Sbjct: 172 MEEFINGIEISVEVLRWEGKSLALVVV--DKGRTTLEAVHPLYKIKKAPAQIKGLDNEKV 229

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGY-SFR 286
              + +   ++   G +  D +FD   RKV+ +E+N +P  T        AA  G     
Sbjct: 230 LLFSRMIVNSLNAEGNTDIDMIFDEKLRKVYAIELNTRPSGTRY----ISAAATGIHPLH 285

Query: 287 ELLLWMV 293
           +L+   +
Sbjct: 286 QLVDMAI 292


>gi|307822577|ref|ZP_07652808.1| phosphoribosylglycinamide formyltransferase 2 [Methylobacter
           tundripaludum SV96]
 gi|307736181|gb|EFO07027.1| phosphoribosylglycinamide formyltransferase 2 [Methylobacter
           tundripaludum SV96]
          Length = 400

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/292 (15%), Positives = 89/292 (30%), Gaps = 35/292 (11%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRS 41
           A+L+G  S E    L  GK  A AL+  G +V  +D                       +
Sbjct: 14  ALLLG--SGE----L--GKELAIALQRYGVEVIAVDRYPNAPAQHVAHRSHVVDMTDTAA 65

Query: 42  VGLVLAHLKPDLAFNVLHGNFGED-GLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           V  ++A  +PD     +     +    ++A  +   +P   +  L       +  + + +
Sbjct: 66  VKKLIALEQPDFIIPEIEAIATQALLDIEAESQCTVVPNARAIQLTMNREGIRTLAAEQL 125

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                    +    +        I  P  IKP    S  G  ++K    +      + S 
Sbjct: 126 KIPTSAYAFAENFEQLQAAVDGGIGYPCFIKPTMSSSGKGQSMVKSADQLKAAWDYAKSS 185

Query: 161 NH-GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
                  +I +     +    ++   +L+               ++ S        P  +
Sbjct: 186 GRVDTGKVIVEAKIDFDFEITLLTVRALNQQGEIETHFCAPIGHVQESGDYRESWQPQAM 245

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
                K  Q +AF     I   G+   +         V++ E++ +P   GM
Sbjct: 246 SAAAIKASQDIAFKITNEIAGLGLFGVELFI--KGDVVWFSEVSPRPHDTGM 295


>gi|294668433|ref|ZP_06733533.1| hypothetical protein NEIELOOT_00348 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309586|gb|EFE50829.1| hypothetical protein NEIELOOT_00348 [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 55/148 (37%), Gaps = 7/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ V++K++ +   +  + +      G+ ++  +       
Sbjct: 149 AAKVGYPVIIKASGGGGGRGMRVVEKEEDLIKSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +   A               S + ++  +      P     +  +++ +    A + 
Sbjct: 209 HVEIQVLADEH-GNAIYLGERDCSMQRRHQKVIEEAPAPGITARE-REKIGKACVEACKR 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG RG    +FL+     + F++E+N +
Sbjct: 267 IGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|270157182|ref|ZP_06185839.1| methylcrotonoyl-CoA carboxylase subunit alpha [Legionella
           longbeachae D-4968]
 gi|289164415|ref|YP_003454553.1| acyl CoA carboxylase subunit alpha subunit [Legionella longbeachae
           NSW150]
 gi|269989207|gb|EEZ95461.1| methylcrotonoyl-CoA carboxylase subunit alpha [Legionella
           longbeachae D-4968]
 gi|288857588|emb|CBJ11426.1| acyl CoA carboxylase subunit alpha subunit [Legionella longbeachae
           NSW150]
          Length = 654

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/147 (14%), Positives = 47/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+  +  +    + L  +   +          ++ + L  
Sbjct: 147 QAQKIGFPVLIKAANGGGGKGMRTVYHESEFSMALAGAKRESMASFADDTMIIEKLVLHP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    +      V         ++          PA      + + +   A    ++I
Sbjct: 207 RHVELQIMADNHGNVVHLFERDCSIQRRHQKIIEEAPAPNLSASLRQRLAEAACEVARSI 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
             RG    +FL D    + +++E+N +
Sbjct: 267 NYRGAGTVEFLVDGEE-QFYFMEMNTR 292


>gi|148381534|ref|YP_001256075.1| acetyl-CoA carboxylase biotin carboxylase [Clostridium botulinum A
           str. ATCC 3502]
 gi|153932361|ref|YP_001385908.1| biotin carboxylase [Clostridium botulinum A str. ATCC 19397]
 gi|153935939|ref|YP_001389315.1| biotin carboxylase [Clostridium botulinum A str. Hall]
 gi|148291018|emb|CAL85155.1| biotin carboxylase [Clostridium botulinum A str. ATCC 3502]
 gi|152928405|gb|ABS33905.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A str. ATCC 19397]
 gi|152931853|gb|ABS37352.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           botulinum A str. Hall]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 87/277 (31%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I    D+  + + LA            D   N              
Sbjct: 17  IIRACREMGIETVAIYSEADKDALHVQLADEAVCIGPPSSKDSYLNMYNIISATVLTGSQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + +   I +            +K  ++ ++   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFANMCKDCNIVFIGPDSETIDKVGNKSNARDIMIRAGVPVIPGSNG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      ++    I  P V+K   GG   GI ++   +++      + S   G      
Sbjct: 137 VIHNEEEALNIAEEIGYPVVVKASAGGGGRGIRIVHSKENMIKAFNTAKSEAKGAFGDDS 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQ 228
            YV+        +    L      +         L+  +       P  ++  ++ K + 
Sbjct: 197 MYVEKFIKNPRHIEFQILGDNYGNIIHLGERDCSLQRRNQKVLEEAPSPRMNEELRKRMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +A+  +     +FL D      +++E+N +
Sbjct: 257 DVAIKAAKAVEYKNAGTIEFLLDE-DESFYFMEMNTR 292


>gi|327353077|gb|EGE81934.1| acetyl-CoA carboxylase [Ajellomyces dermatitidis ATCC 18188]
          Length = 2279

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 218 PHIYEKGCTHSPQEGLEKARAIGFPVMVKASEGGGGKGIRKVEREEDFINMYNAAASEIP 277

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + + +   +   L   ++ D   +   +            +                
Sbjct: 278 GSPIFVMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKQ 333

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ +++ A    + +G       ++L+     K ++LE+N +
Sbjct: 334 ETFQAMEQAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 377


>gi|261190098|ref|XP_002621459.1| acetyl-CoA carboxylase [Ajellomyces dermatitidis SLH14081]
 gi|239591287|gb|EEQ73868.1| acetyl-CoA carboxylase [Ajellomyces dermatitidis SLH14081]
 gi|239606347|gb|EEQ83334.1| acetyl-CoA carboxylase [Ajellomyces dermatitidis ER-3]
          Length = 2292

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 18/164 (10%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 218 PHIYEKGCTHSPQEGLEKARAIGFPVMVKASEGGGGKGIRKVEREEDFINMYNAAASEIP 277

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + + +   +   L   ++ D   +   +            +                
Sbjct: 278 GSPIFVMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKQ 333

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ +++ A    + +G       ++L+     K ++LE+N +
Sbjct: 334 ETFQAMEQAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 377


>gi|222475296|ref|YP_002563713.1| propionyl-CoA carboxylase alpha chain precursor (pycA) [Anaplasma
           marginale str. Florida]
 gi|222419434|gb|ACM49457.1| propionyl-CoA carboxylase alpha chain precursor (pycA) [Anaplasma
           marginale str. Florida]
          Length = 662

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/283 (13%), Positives = 87/283 (30%), Gaps = 31/283 (10%)

Query: 32  KVSQIDVDRSVGLVLAHLKP-----DLAFNVLH---GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    +    L   K      D   + +H   G   E+      L    + +    
Sbjct: 50  EAVYIGPGPASQSYLDICKICAVAKDTGVDAVHPGYGFLAENAEFPDRLSECGVGFIGPA 109

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSL 139
             +  +  DK+ SK+V    GV V P  +    +      I+     P +IK   GG   
Sbjct: 110 PSSMRMMSDKVVSKRVAQDAGVAVVPGYMGVVESPADAKKIAESIGFPVMIKAAAGGGGK 169

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+ V+K  + +    + +++           +++        +    +      V     
Sbjct: 170 GMRVVKSAKEMEQAFVSATNEASKSFSDGRIFIEKYVEFPRHIEVQIVADKHGNVVCLGE 229

Query: 200 YSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVF 258
               ++ ++       P+       ++          + +    +   +F+ D    + +
Sbjct: 230 RECSIQRNNQKVIEETPSPFLDKKTRQNMYDQCVSLAKRVNYFSVGTVEFVIDAEK-RFY 288

Query: 259 WLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
           +LE+N       P      +   +         +L+  M++ A
Sbjct: 289 FLEMNTRLQVEHP---VTELVTRI---------DLVEEMIKIA 319


>gi|50413128|ref|XP_457211.1| DEHA2B05764p [Debaryomyces hansenii CBS767]
 gi|49652876|emb|CAG85206.1| DEHA2B05764p [Debaryomyces hansenii]
          Length = 2297

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  +  ++       Q+S+   G  + I +   D   L  
Sbjct: 304 AKEIGFPVMIKASEGGGGKGIRKVDNEKDFIALYKQASNEIPGSPIFIMKLAGDARHLEV 363

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + +  ++  A    + +G
Sbjct: 364 QLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIAKKESFHAMENAAVRLGKLVG 419

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 420 YVSAGTVEYLYSHSEDKFYFLELNPR 445


>gi|71803232|gb|AAX72585.1| biotin carboxylase [Streptococcus pyogenes MGAS6180]
          Length = 470

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 272

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 273 QAAVRAAEAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 309


>gi|74215392|dbj|BAE41902.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 70/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 280

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G +     +FL D    K +++E+N +
Sbjct: 281 ATHLDPQLRSRLTSDSVKLAKQVGYKNAGTVEFLVDKH-GKHYFIEVNSR 329


>gi|21911055|ref|NP_665323.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS315]
 gi|28895259|ref|NP_801609.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes SSI-1]
 gi|21905264|gb|AAM80126.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes MGAS315]
 gi|28810505|dbj|BAC63442.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes SSI-1]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAHGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 257 QAAVRAAKAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 293


>gi|330842691|ref|XP_003293306.1| acetyl-CoA carboxylase [Dictyostelium purpureum]
 gi|325076370|gb|EGC30161.1| acetyl-CoA carboxylase [Dictyostelium purpureum]
          Length = 2264

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 30/229 (13%), Positives = 66/229 (28%), Gaps = 9/229 (3%)

Query: 39  DRSVGLVLAHLKPDLAF--NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +  +  +L+  K  + F     +        + + +              S L++D   S
Sbjct: 113 NPRLPDLLSKTKTGIVFIGPPANAMQDLGDKIASTIVAQSARVACVPWSGSGLTVD--YS 170

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
           K       +     +            +  P +IK  +GG   GI  +   + +P    Q
Sbjct: 171 KSGEIPQDIYRKACVTSVEECKAVAERVGFPAMIKASEGGGGKGIRKVLSMEDLPSSFRQ 230

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
             S   G  +   + V         +             +        +        + P
Sbjct: 231 VQSEVPGSPIFFMKLVPNARHLEVQIVADRHGEAISLNGRDCSVQRRHQKIIEEGPAIAP 290

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +  ++    A    + +G  G    ++LF     + F+LE+N +
Sbjct: 291 TPQVWEEMEKA---AVRLVKEVGYVGAGTVEYLF--ADNQYFFLELNPR 334


>gi|251778785|ref|ZP_04821705.1| pyruvate carboxylase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
 gi|243083100|gb|EES48990.1| pyruvate carboxylase [Clostridium botulinum E1 str. 'BoNT E
           Beluga']
          Length = 1146

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 44/281 (15%), Positives = 89/281 (31%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 A  + G +   I                   + ++ G V A+L  D        
Sbjct: 17  AIRIFRACHELGIRTVAIYSEEDKRALFRTKAHEAYQIGKNKGPVEAYLNIDEIIKLALK 76

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+       E + I +            DK++SK V  + GVPV P
Sbjct: 77  KNVDAIHPGYGFLSENPEFARRCEEVGIEFIGPKSEMMDQLGDKIKSKIVAKNVGVPVIP 136

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +            I+     P +IK   GG   G+ +++ +  +    L + +      
Sbjct: 137 GVEKPINCEKEAMEIAGMCGYPVMIKAAAGGGGRGMRIVRHENELVDAFLSAKNEAKKAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIY 224
            + + +++        +    L      V         ++        + PA     +  
Sbjct: 197 GIDDMFIEKYIEGPKHIEIQILGDKYGNVVHLYERDCSIQRRHQKVIEISPALSLTQEKR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+   A    +A+  R     +FL D      +++E+N +
Sbjct: 257 EEICADALKIAKAVDYRNAGTLEFLVDIHGNH-YFIEMNPR 296


>gi|218526168|gb|ACK86491.1| carbamoyl-phosphate synthase [Chasmoptera hutti]
          Length = 706

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 116 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 175

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 176 TFGGQTALNCGVELEKANVFEKYGCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 235

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG         +    L + +  H +QL+I++
Sbjct: 236 VYSVEEALQAAEKIGYPVMARAAFSLGGLGSGFANNQDQLRS--LAAQALAHSNQLIIDK 293

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 294 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNILRTT 352

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 353 AINVVRHFKVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 408

Query: 291 WM 292
            +
Sbjct: 409 KL 410


>gi|254473954|ref|ZP_05087348.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudovibrio sp.
           JE062]
 gi|211957064|gb|EEA92270.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudovibrio sp.
           JE062]
          Length = 662

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 5/150 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  +         L  +              ++   L+  
Sbjct: 148 AEKIGYPVLIKARAGGGGKGMRRVDDPADFIEALEGAQREGQSSFGDPRVLIEKYILSPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +                     L+          PA    +  +      A  A QA+G
Sbjct: 208 HIEVQVFCDGHGNAVHLFERDCSLQRRHQKVIEEAPAPGMTEEMRNAMGEAAVKAAQAVG 267

Query: 240 CRGISRSDFLFDPLSR----KVFWLEINVQ 265
             G    +F+ D        + +++E+N +
Sbjct: 268 YEGAGTVEFIVDGSDGLRPDRFWFMEMNTR 297


>gi|194245494|gb|ACF35356.1| carbamoylphosphate synthetase [Scaphinotus petersi]
          Length = 671

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                     + V  V+   +P     
Sbjct: 71  SGSQAIKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPLVPQYVEQVIRAERPGGVLL 130

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     + E   +    + I A   + D+ +  + +      V    +
Sbjct: 131 TFGGQTGLNCGVELQRSGVFEKYGVRILGTPIDAIIDTEDRKKFSEHISAIGEKVAPSCA 190

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +D+   +  P + +       LG       + + L  L   +  H  QL+I++
Sbjct: 191 VFSVQEAIDAAEKLGYPVMARAAFSLGGLGSGFADNKEELKL--LALQALAHSSQLIIDK 248

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 249 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 307

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 308 AINVIRHFGVVGECNIQYAVNPYAEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 363

Query: 291 WM 292
            +
Sbjct: 364 KL 365


>gi|223935114|ref|ZP_03627032.1| acetyl-CoA carboxylase, biotin carboxylase [bacterium Ellin514]
 gi|223895998|gb|EEF62441.1| acetyl-CoA carboxylase, biotin carboxylase [bacterium Ellin514]
          Length = 460

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/278 (12%), Positives = 80/278 (28%), Gaps = 37/278 (13%)

Query: 22  CASALEDAGFKVSQIDVDRSVG---LVLAHL--------------KPDLAFNVLH----- 59
              A ++   +   +  D+      + LA                + D   +        
Sbjct: 17  IIRACKELNIRTVAVYSDQDANSMHVQLADEAICIGKAPSNESYLRIDRLISAAEIADVD 76

Query: 60  ------GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
                 G   E+     + E   I +      A     DK  S+ +    GVP+ P    
Sbjct: 77  AIHPGYGFLSENAHFADVCESCNIRFIGPSSRAMNAMEDKAVSRSLAKKAGVPIPPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI----PLDLLQSSSWNHGDQ 165
            +   +  +     I  P +IK + GG   G+ V   D S+         ++        
Sbjct: 137 IVENEQEALVVAKRIGYPVMIKAVAGGGGRGMRVAHNDISLVKGYHTARTEAEKAFGNSG 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           + IE++++        +   +         +        +     +   L       +  
Sbjct: 197 VYIEKFIENPHHIEFQILGDNKGHIIHLGERDCSIQRRNQKVVEETPSPLIEGKFRKLRD 256

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           ++ + A    +          +F+ D  +   ++LE+N
Sbjct: 257 KMGKAAVKIAELAHYTNAGTVEFIVD-NNGNYYFLEMN 293


>gi|332360623|gb|EGJ38433.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus sanguinis
           SK1056]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 87/281 (30%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRSVGLVLAHLKP---------DLAFN-------------- 56
              A  + G     +    DR     L   +          D   N              
Sbjct: 17  IIRAARELGIDTVAVYSTADREALHTLLADEAVCIGPAKSTDSYLNMNAVLSAAVLTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +         +  DK+ ++  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEVGIKFIGPSGAVMDMMGDKINARAQMIKAKVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGD 164
            +  +   ++    I  P ++K   GG   GI  ++K + +            +++ +G 
Sbjct: 137 EVHTSEEALEVAEKIGYPVMLKASAGGGGKGIRKVEKAKDLVAAFESASSEAKAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +         +   ++ D    V  +            K    + +  +       + 
Sbjct: 197 MYMERVIYPARHIEVQILADQQGHVVHLGERDCSLQRNNQKVLEESPSVAI----GKTLR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +++   A  A Q++G       +FL D    + +++E+N +
Sbjct: 253 QQIGEAAVRAAQSVGYENAGTIEFLLDEAKAEFYFMEMNTR 293


>gi|254823120|ref|ZP_05228121.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           intracellulare ATCC 13950]
          Length = 659

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 98/318 (30%), Gaps = 51/318 (16%)

Query: 22  CASALEDAGFKVSQI--DVDRSVGLVLAH---------------LKPDLAFNV------- 57
               L   G +   +  D D     VL                 L  D            
Sbjct: 11  VIRTLRRLGIRSVAVYSDPDAGARHVLEADEAVRLGPAAARESYLNIDKVVEAAVRTGSQ 70

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+    A  E   + +      A  +  DK+ +K  V++  VPV P +  
Sbjct: 71  AIHPGYGFLSENADFAAACERAGVVFLGPPAQAIQVMGDKITAKNAVAAFDVPVVPGVAK 130

Query: 113 ---VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
               +   + +   +  P +IKP  GG   G+ ++++   +   L+ +            
Sbjct: 131 PGLNDDALVAAADDVGYPVLIKPSAGGGGKGMRLVEEPAKLREALVSARREAASAFGDDT 190

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            +++   L    +    L  T   V         L+          P+ +  +     + 
Sbjct: 191 LFLERFVLRPRHIEVQVLADTHGNVVHLGERECSLQRRHQKVIEEAPSPLLDEATRARIG 250

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAG 282
             A    +++   G    +F+       + F++E+N       P +T         A  G
Sbjct: 251 AAACNTARSVDYVGAGTVEFIVSAERPDEFFFMEMNTRLQVEHP-VTE--------AVTG 301

Query: 283 YSFRELLLWMVEDASCLR 300
               +L+ W +  A+  +
Sbjct: 302 L---DLVEWQLRVAAGEK 316


>gi|158451281|gb|ABW39001.1| putative CAD trifunctional protein [Plodia interpunctella]
 gi|254934049|gb|ACT87633.1| carbamoylphosphate synthetase [Plodia interpunctella]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEERIQTVLINPNIATVQTSKGLADKVYFLPITPDYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + +      V    +
Sbjct: 436 TFGGQTALNCGVELEKSGVFQKYNVTVLGTPIKSIVETEDRKIFAEKIQDIGEQVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + + + I  P + +       LG      +  +    L   + ++ DQL+I++
Sbjct: 496 VTSIEEALAAANQIGYPVMARSAFSLGGLGSGFANNEDELKT--LAHQALSYSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 ALKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|170755083|ref|YP_001782935.1| pyruvate carboxylase [Clostridium botulinum B1 str. Okra]
 gi|169120295|gb|ACA44131.1| pyruvate carboxylase [Clostridium botulinum B1 str. Okra]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|153941124|ref|YP_001392657.1| pyruvate carboxylase [Clostridium botulinum F str. Langeland]
 gi|152937020|gb|ABS42518.1| pyruvate carboxylase [Clostridium botulinum F str. Langeland]
 gi|295320642|gb|ADG01020.1| pyruvate carboxylase [Clostridium botulinum F str. 230613]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|154275046|ref|XP_001538374.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
 gi|150414814|gb|EDN10176.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
          Length = 674

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 46/141 (32%), Gaps = 4/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K + GG   GI  +K    +   + +++  +   ++ +E+   G       +   
Sbjct: 159 YPVMVKAVDGGGGRGIRFVKGPDELQSAIDRATGESPSKKVFVEKAAVG---GFHHIEVQ 215

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
            +      V         ++          P       + K V   A      I    + 
Sbjct: 216 VVGDGTGEVRHLWERDCSVQRRFQKIVECAPAMMKNRTLIKRVIESALRMASEIKYLSLG 275

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL      K ++LEIN +
Sbjct: 276 TFEFLASEKLSKFYFLEINPR 296


>gi|318606044|emb|CBY27542.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           enterocolitica subsp. palearctica Y11]
          Length = 393

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +                  
Sbjct: 84  EAIATDMLVELENMGQKVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTESAFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P ++KP+   S  G  +I+ +  +        +   G     +  V+G+   
Sbjct: 143 QAVSEMGYPCIVKPVMSSSGKGQSLIRNEPQLQAA--WDYAQQGGRAGGGKVIVEGLIHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +        + +A    +A+
Sbjct: 201 DFEITLLTISAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDVAVARAKEIASQVVKAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|254933949|gb|ACT87583.1| carbamoylphosphate synthetase [Caloptilia bimaculatella]
          Length = 977

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++       I+ +                       V  V+   +P     
Sbjct: 377 SGSQAVKAMQEEKILTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 436

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + ++     V    +
Sbjct: 437 TFGGQTALNCGVELKKSGVFEKYNVSVLGTPIQSIIDTEDRKIFAEKINIIGEKVAPSAA 496

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 497 VSSVEEALIAAQQIGYPVMARAAFSLGGLGSGFANNEDELKT--LAHHALSHSDQLIIDK 554

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 555 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 613

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 614 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 669

Query: 291 WM 292
            +
Sbjct: 670 KL 671


>gi|213419768|ref|ZP_03352834.1| carbamoyl phosphate synthase large subunit [Salmonella enterica
           subsp. enterica serovar Typhi str. E01-6750]
          Length = 265

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/236 (13%), Positives = 67/236 (28%), Gaps = 27/236 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL + G++V  ++ +                       V  ++   +PD    
Sbjct: 29  SGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
            + G        +   Q +LE   +    +   A   + D+ R    +   G+    S  
Sbjct: 89  TMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDIAMKKIGLDTARSGI 148

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +     +  P +I+P       G  +    +       +    +  ++LLI++
Sbjct: 149 AHTMEEALAVAADVGFPCIIRPSFTMGGTGGGIAYNREEFEEICERGLDLSPTNELLIDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
            + G +     +     +     +    F      Y  L+     P      I   
Sbjct: 209 SLIGWKEYEMEVVRDKNEQLHHRLLYRKFRCDGYPYWGLDHRGARPDSDRQRISNH 264


>gi|205374076|ref|ZP_03226876.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           coahuilensis m4-4]
          Length = 459

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 95/317 (29%), Gaps = 50/317 (15%)

Query: 22  CASALEDAGFKVSQID---VDRSVGLVLAHLKP--------DLAFN-------------- 56
              A ++ G +   +       ++ + LA            D   N              
Sbjct: 17  IIRACQELGVETVAVYSEADKEALHVQLADESYCIGPRLSKDSYLNFTNILSVAKLTDCD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+           I +      A +    K  ++  +   GVP+ P    
Sbjct: 77  AIHPGYGFLSENADFADCCRECNIIFVGPTPEAISKMGTKDVARNTMKDAGVPIVPGSEG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      +     I  P +IK   GG   GI V +  + +   +  +            
Sbjct: 137 IVKDVEDALQIAKGIGYPIIIKATAGGGGKGIRVARTPEELEKGVRITQQEALTAFGNPG 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++        +    L  T   V         ++          P+    + + +++ 
Sbjct: 197 VYLEKYIEDFRHVEVQILADTYGNVIHLGERDCTIQRRLQKLLEETPSPAITEDLRQQIG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGY 283
             A  A QA+  +G    +F+FD   +K +++E+N       P         EM    G 
Sbjct: 257 EAAVKAAQAVDYQGAGTVEFIFDYHEKKFYFMEMNTRIQVEHP-------VTEM--VTGV 307

Query: 284 SFRELLLWMVEDASCLR 300
              +L+   +E A   R
Sbjct: 308 ---DLVKEQIEIAGGKR 321


>gi|182412794|ref|YP_001817860.1| pyruvate carboxylase [Opitutus terrae PB90-1]
 gi|177840008|gb|ACB74260.1| pyruvate carboxylase [Opitutus terrae PB90-1]
          Length = 1165

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/239 (16%), Positives = 81/239 (33%), Gaps = 15/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+  S+  V      D      +G   E+  +    E   + +         +  DK  
Sbjct: 57  LDI-ESIIDVAKRRGVDAIHPG-YGFLSENAELARACERAGLIFVGPRPELLDMMGDKTA 114

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI- 150
           ++ +    GVPV P     +      +     I  P +IK   GG   G+ ++ K   + 
Sbjct: 115 ARALAQRIGVPVLPGTEEPLTDRDEALRVAKSIGFPLIIKAAFGGGGRGMRIVHKPADMA 174

Query: 151 ----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
                       ++ +    L +       +   V+GD   +V  +            K 
Sbjct: 175 GLLDEAQAEAGRAFGNPAVFLEKYIPRAKHIEVQVLGDRHGNVIHLHERDCSVQRRHQKV 234

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +  ++ LP  I  ++ +     A    ++I        +FL+D    + F++E+N +
Sbjct: 235 VEVAPSYGLPETIVAELCE----AAAKLARSIRYDNAGTIEFLYDLDRHEWFFIEMNPR 289


>gi|170758452|ref|YP_001788628.1| pyruvate carboxylase [Clostridium botulinum A3 str. Loch Maree]
 gi|169405441|gb|ACA53852.1| pyruvate carboxylase [Clostridium botulinum A3 str. Loch Maree]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|148381255|ref|YP_001255796.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 3502]
 gi|148290739|emb|CAL84870.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 3502]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|91762148|ref|ZP_01264113.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1002]
 gi|91717950|gb|EAS84600.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1002]
          Length = 445

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++K++                + + +  + + + D  
Sbjct: 148 CKKIGFPVLIKASAGGGGKGMKIVRKEEEFETLFSTAKSEAQKYFGNDEIYIEKFFQDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+   +  V       S       +             +   I K++        
Sbjct: 208 HIEVQVLSGKNRTVHLHERDCSVQ-----RRHQKLIEETPSPVLTDQIRKDLFERTVNMV 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG  G    +F++     K ++LE+N +
Sbjct: 263 SKIGYEGAGTVEFIY--EDGKFYFLEMNTR 290


>gi|34398173|gb|AAQ67176.1| CAD [Epalpus signifer]
          Length = 1294

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 369 SGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 428

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+    + V+     V    +
Sbjct: 429 TFGGQTALNCGVELEKSGVFSKYNVKIIGTPIKSIIETEDRKIFAERVNEIGEKVAPSEA 488

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG      ++ +    L   +  H  QL+I++
Sbjct: 489 VYSVEEALNAAKRIGFPVMARAAFSLGGLGSGFADNEEELDN--LARQALAHSSQLIIDK 546

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 IAV   +       ++  +        +    Y  ++  
Sbjct: 547 SLKGW-KEVEYEVVRDAFDNCIAVCNMENLDPLGIHTGESIVVAPSQTLNNREYNMLRTT 605

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 606 ALKVIRHFGVVGECNIQYALNPYSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 661

Query: 291 WM 292
            +
Sbjct: 662 KL 663


>gi|212638867|ref|YP_002315387.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Anoxybacillus flavithermus WK1]
 gi|212560347|gb|ACJ33402.1| Formate-dependent phosphoribosylglycinamide formyltransferase (GAR
           transformylase) [Anoxybacillus flavithermus WK1]
          Length = 409

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/172 (15%), Positives = 62/172 (36%), Gaps = 15/172 (8%)

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                   P  +++         IS P VIKP+    S G+ + +  + + L L +    
Sbjct: 124 CFSEFLQPPFHIIHHPDEIIDLEISFPCVIKPVDDSGSNGVTICQNRRDLELSLREEWQR 183

Query: 161 NHGDQ-------LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              ++        LIE++++G E +  ++             K  + S+ ++   + S  
Sbjct: 184 QRNERGYVLERKWLIEEWIEGQEFSAEMLYTTDGWKLISVTKKETYGSHAVECGHVTSPK 243

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + P     +  K +  L  L +        +  +F        ++ +E+N +
Sbjct: 244 LNPFYDLEERCKRLLNLLGLNYG------AAHIEFFV--RGNNLYLVEVNPR 287


>gi|170087974|ref|XP_001875210.1| ACC1, acetyl-CoA carboxylase, cytosolic [Laccaria bicolor
           S238N-H82]
 gi|164650410|gb|EDR14651.1| ACC1, acetyl-CoA carboxylase, cytosolic [Laccaria bicolor
           S238N-H82]
          Length = 2213

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/149 (14%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIE 176
           M+    I  P +IK  +GG   GI  +            +S    G  + I +       
Sbjct: 208 MERAEEIGYPVMIKASEGGGGKGIRKVDHPDGFKNAYHAASGEIPGSPIFIMKLAGQARH 267

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
           L   ++ D   +   +            +                + +++++R A    +
Sbjct: 268 LEVQLLADQYGNAISLFGRDCSVQ----RRHQKIIEEAPVTIAKEETFEQMERAAVRLSK 323

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +G       ++L+       ++LE+N +
Sbjct: 324 LVGYVSAGTVEYLYSHADDSFYFLELNPR 352


>gi|119477479|ref|ZP_01617670.1| predicted ATP-grasp enzyme [marine gamma proteobacterium HTCC2143]
 gi|119449405|gb|EAW30644.1| predicted ATP-grasp enzyme [marine gamma proteobacterium HTCC2143]
          Length = 583

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/180 (12%), Positives = 47/180 (26%), Gaps = 21/180 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL----LQSSSWNHGDQLLIEQYVDGIE 176
            H  + P V+K  +         +     I  +          W     +  ++Y  G  
Sbjct: 156 AHSDNYPLVLKTSQSFIERDGKTVYSPVCIASNAEERGQFLEKWLPYCPVQQQEYFQGEG 215

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
                +  +   V      +          SS   +   P  +                 
Sbjct: 216 WGVEFLYVSGHCVLHFCHQRIHELPLTGGGSSYRRSANAPKAMLDA--------GKAILD 267

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDA 296
            +   G++  +F  +  + +   LEIN +         P      G +F    + M+  A
Sbjct: 268 QLNWHGLAMVEFKMNE-NGEFVLLEINPR----SWGSLPLSVKA-GVNFP---VEMLNIA 318


>gi|15602956|ref|NP_246028.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pasteurella
           multocida subsp. multocida str. Pm70]
 gi|12721430|gb|AAK03175.1| AccC [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 448

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 41/286 (14%), Positives = 88/286 (30%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSTKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAIEAMKKSGVPCVP 132

Query: 110 SIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
                         +    I  P +IK   GG   G+ V++ + S+   +  + +     
Sbjct: 133 GSDGPVGSDMVKNKEIAKRIGYPVIIKASGGGGGRGMRVVRDEASLEESIAMTKAEAKAA 192

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +N+    + +   +   +   V+ D   +   +A           +             I
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQ----RRHQKVVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ +++      A   IG RG    +FL+   + + +++E+N +
Sbjct: 249 SDEVRRDIGERCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|329119131|ref|ZP_08247822.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria bacilliformis
           ATCC BAA-1200]
 gi|327464762|gb|EGF11056.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria bacilliformis
           ATCC BAA-1200]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 54/148 (36%), Gaps = 7/148 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIEL 177
              +  P +IK   GG   G+ V++K + +   +  + +      G+ ++  +       
Sbjct: 149 AEKVGYPVIIKASGGGGGRGMRVVEKKEDLIKSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              +   A               S + ++  +      P     +  +++ +    A + 
Sbjct: 209 HVEIQVLADEH-GNAIYLGERDCSMQRRHQKVIEEAPAPGITAKE-REKIGKACVEACKR 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG RG    +FL+     + F++E+N +
Sbjct: 267 IGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|325201499|gb|ADY96953.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240149]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEEERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|194245490|gb|ACF35354.1| carbamoylphosphate synthetase [Copelatus distinctus]
          Length = 666

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 66  SGSQAIKALQEENIQTVLINPNIATVQTSRGLADKVYFLPLMPEYVEQVIRAERPGGVLL 125

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I A   + D+    + ++     V    +
Sbjct: 126 TFGGQTALNCGVELQKAGVFQKYGVRILGTPIEAIIDTEDRKIFSERIAEIGEKVAPSCA 185

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG         +    L   +  H  QL+I++
Sbjct: 186 VYSVPEALEAAEVLGYPVMARAAFSLGGLGSGFADNKDELKS--LAQQALAHSSQLIIDK 243

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 244 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 302

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 303 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 358

Query: 291 WM 292
            +
Sbjct: 359 KL 360


>gi|167045681|gb|ABZ10329.1| putative carbamoyl-phosphate synthase L chain, ATP binding domain
           protein [uncultured marine crenarchaeote
           HF4000_APKG10L15]
          Length = 1014

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 42/269 (15%), Positives = 82/269 (30%), Gaps = 22/269 (8%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKM 94
           V  ++   +PD    + +G          I E   +      +L + +          K 
Sbjct: 8   VESIIEKERPDGIM-LSYGGQTALNCGVKIDESGILKKYGVSVLGTQISGIMATEDRQKF 66

Query: 95  RSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL 154
           +   +  +  +    ++            +  P +++        G  V   +  +    
Sbjct: 67  KDSMIKCNVPILKSKTVRTFDEAKKVAKDLGYPVIVRVAYTLGGKGGGVAFNEIELYEIT 126

Query: 155 LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
            +  + +   Q+LIE+YV G                 + V   +       ++  N    
Sbjct: 127 GRGLAASLVGQILIEEYV-GDWKQIEYEVMQDYSKNNVIVCNMENVLSMRVHTGDNIVVA 185

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-- 272
               I    Y  ++  A  A + +G  G     F  D  S K   +EIN  P ++  S  
Sbjct: 186 PSQTIDNHEYHMLRSAALQATKQVGIVGECNIQFALDQSSDKYAAIEIN--PRLSRSSAL 243

Query: 273 -----IFPEMAAYA----GYSFRELLLWM 292
                 +P     A    GYS  EL+  +
Sbjct: 244 ASKATGYPLAYMSAKIGLGYSLPELVNTI 272


>gi|167627087|ref|YP_001677587.1| phosphoribosylglycinamide formyltransferase 2 [Francisella
           philomiragia subsp. philomiragia ATCC 25017]
 gi|167597088|gb|ABZ87086.1| Phosphoribosylaminoimidazole carboxylase [Francisella philomiragia
           subsp. philomiragia ATCC 25017]
          Length = 385

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 36/248 (14%), Positives = 78/248 (31%), Gaps = 22/248 (8%)

Query: 31  FKVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASA 88
            +   ID+    ++  ++   KP      +     +  +         IP   +  L   
Sbjct: 47  HESYVIDMLNADTLQELILAKKPTYIVPEIEAINTDVLIKLETQGFNIIPCAKATKLTMD 106

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
               +  +   +              +  +D+  +I  P+VIKP+   S  G  ++K+  
Sbjct: 107 RQGIRSLAANELGLAT-SKFAFANSQKEYLDAVEVIGLPFVIKPVMSSSGKGQSIVKEHS 165

Query: 149 SIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSS 208
            +      + S + G             +      D   ++T + V   D  S+      
Sbjct: 166 EVQKAWDYAQSGSRGH---------AKGVIVEQFIDFDYEITLLTVRHKDGVSFCDPIGH 216

Query: 209 -----LNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                       P  +      + Q++A     A+G  G+   +        +VF+ E++
Sbjct: 217 IQKDGDYRFSWQPHGMSDIALTKSQKIAKEITDALGGYGVFGVELFI--KGDEVFFNEVS 274

Query: 264 VQP---GM 268
            +P   GM
Sbjct: 275 PRPHDTGM 282


>gi|86451371|gb|ABC96905.1| acetyl coenzyme A carboxylase alpha [Capra hircus]
          Length = 1832

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 237 LCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 296

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 297 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 353

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 354 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 411

Query: 264 VQ 265
            +
Sbjct: 412 PR 413


>gi|33864531|ref|NP_896091.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. MIT 9313]
 gi|81576601|sp|Q7V3S4|PURT_PROMM RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|33641311|emb|CAE22441.1| GAR transformylase 2 [Prochlorococcus marinus str. MIT 9313]
          Length = 388

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 73/235 (31%), Gaps = 6/235 (2%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  ++   ++  ++ H +PD+    +               +  IP   +  +      
Sbjct: 50  EVLDMNNSEALTAIIRHHQPDVVIPEIEALAVNALAELENEGITVIPTARATAITMNRDR 109

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +  +   ++    P             +   +  P V+KP+   S  G  V+   + + 
Sbjct: 110 IRDLASAELALLT-PKFAYAGSAEELKHAAEPLGWPVVVKPVMSSSGKGQSVVSNPEGLR 168

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + + + G+   +        L   +         E             +      
Sbjct: 169 QAWQAAMAGSRGNSPRVIVEE---FLHFDLEITLLTIRQEDGSTLFCEPIGHEQIGGDYQ 225

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               PA++  +  K+ Q +A    + +G  G+   +F       +V + E++ +P
Sbjct: 226 CSWQPAELSTEQLKQAQSMALTITKNLGGVGLFGVEFFLC--GNEVIFSELSPRP 278


>gi|27806341|ref|NP_776649.1| acetyl-CoA carboxylase 1 [Bos taurus]
 gi|13626188|sp|Q9TTS3|ACACA_BOVIN RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; AltName:
           Full=ACC-alpha; Includes: RecName: Full=Biotin
           carboxylase
 gi|6006405|emb|CAB56826.1| acetyl-CoA-carboxylase [Bos taurus]
          Length = 2346

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|296476991|gb|DAA19106.1| acetyl-CoA carboxylase 1 [Bos taurus]
          Length = 2346

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|260434185|ref|ZP_05788156.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
 gi|260418013|gb|EEX11272.1| methylcrotonoyl-CoA carboxylase subunit alpha [Silicibacter
           lacuscaerulensis ITI-1157]
          Length = 643

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/192 (14%), Positives = 67/192 (34%), Gaps = 33/192 (17%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK + GG   G+ ++++       L        +++ +   L+ +      
Sbjct: 148 ADTIGYPVLIKAVAGGGGKGMRLVERPADFAAALDSARGEARTAFGNDAVLVEKFVAKPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD +  V       S    ++       +  + P     ++ + + +    A 
Sbjct: 208 HIEVQVFGDGTHAVHLFERDCSLQRRHQKVIEEAPAPGMTP-----EMREAMGQAGVRAA 262

Query: 236 QAIGCRGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAY------AGYSF 285
           +AIG +G    +F+ D        + +++E+N +              +       G   
Sbjct: 263 EAIGYKGAGTVEFIVDASDGLRPDRFWFMEMNTR----------LQVEHPVTEAITGI-- 310

Query: 286 RELLLWMVEDAS 297
            +L+ W +  A+
Sbjct: 311 -DLVEWQLRVAA 321


>gi|242017480|ref|XP_002429216.1| acetyl-CoA carboxylase, putative [Pediculus humanus corporis]
 gi|212514105|gb|EEB16478.1| acetyl-CoA carboxylase, putative [Pediculus humanus corporis]
          Length = 2251

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 53/146 (36%), Gaps = 6/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
              I  P +IK  +GG   GI  ++  +  P    Q  +   G  + I +       L  
Sbjct: 213 AQKIGFPVMIKASEGGGGKGIRKVESGEEFPNQFRQVQAEVPGSPIFIMKLARCARHLEV 272

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +               L+++++++R A    + +G
Sbjct: 273 QLLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIIAKLEVFEDMERAAVRLAKMVG 328

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+D  +   ++LE+N +
Sbjct: 329 YVSAGTVEYLYDT-NGNYYFLELNPR 353


>gi|57164283|ref|NP_001009256.1| acetyl-CoA carboxylase 1 [Ovis aries]
 gi|3023534|sp|Q28559|ACACA_SHEEP RecName: Full=Acetyl-CoA carboxylase 1; Short=ACC1; AltName:
           Full=ACC-alpha; Includes: RecName: Full=Biotin
           carboxylase
 gi|897790|emb|CAA56352.1| acetyl-CoA carboxylase [Ovis aries]
          Length = 2346

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LCVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|315453559|ref|YP_004073829.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Helicobacter
           felis ATCC 49179]
 gi|315132611|emb|CBY83239.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Helicobacter
           felis ATCC 49179]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 45/255 (17%), Positives = 86/255 (33%), Gaps = 12/255 (4%)

Query: 21  ACASALEDAGFKV-------SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILE 73
             AS L D  ++V       S +++D+ V  +    + D      +G   E+    A +E
Sbjct: 45  NLASQLADETYRVGENLAHKSYLNIDK-VLEIAKQAQVDAIHPG-YGFLSENPKFAARVE 102

Query: 74  LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVI 130
              I +            DK ++ +      VP+ PS  V             I  P +I
Sbjct: 103 EAGIIFVGPSSALIETMGDKAKALEQARKSQVPIMPSSPVLDSVDMALEIASKIGYPLLI 162

Query: 131 KPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVT 190
           K + GG   GI  +K +  +      ++S           Y++        +    L   
Sbjct: 163 KAVAGGGGKGIRFVKDEADLRSQFDIATSEARAAFGNGGVYLEKYLQNAKHIEVQILGDG 222

Query: 191 EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLF 250
           E  +   D      +             +     + +   A      +G +G    +FL+
Sbjct: 223 ERVIHLFDRECSLQRRRQKVLEEAPSPSLDAQTRQALCTGAARMAADVGYKGAGTLEFLY 282

Query: 251 DPLSRKVFWLEINVQ 265
           D  S++ ++LE+N +
Sbjct: 283 DTNSKEFYFLEMNTR 297


>gi|281424217|ref|ZP_06255130.1| ATP-grasp domain protein [Prevotella oris F0302]
 gi|281401486|gb|EFB32317.1| ATP-grasp domain protein [Prevotella oris F0302]
          Length = 371

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/140 (16%), Positives = 51/140 (36%), Gaps = 14/140 (10%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P VIK   G SS G+   K  +     LL+ +       +L+E +  G + +   +   
Sbjct: 141 YPIVIKTKFGNSSKGVFFPKDYEEAKKLLLKFNKK----DILVEDFFSGRDYSVDCVRYD 196

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
                          +Y    +  +       +I ++  + ++  + L    +  RG+  
Sbjct: 197 ---------SFFQACTYRALVTKTDGGGTTTQRILVEKPE-LELYSKLILDKVDYRGVCG 246

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            DF  +  +    ++E+N +
Sbjct: 247 IDFKVNEQTNDAVFIEVNPR 266


>gi|195430104|ref|XP_002063097.1| GK21564 [Drosophila willistoni]
 gi|194159182|gb|EDW74083.1| GK21564 [Drosophila willistoni]
          Length = 2485

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 24/145 (16%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
           + I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   
Sbjct: 441 NKIGFPVMIKASEGGGGKGIRRVDTAEEFPALFRQVQAEVPGSPIFVMKLASGARHLEVQ 500

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +   +            +                ++++++++ A    + +G 
Sbjct: 501 LLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGY 556

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+DP   K F+LE+N +
Sbjct: 557 VSAGTVEYLYDPE-GKYFFLELNPR 580


>gi|158451119|gb|ABW38920.1| putative CAD trifunctional protein [Bathyphlebia eminens]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKLRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALVAAVNIGYPVMARSAFSLGGLGSGFANNEEELRT--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AMKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|296101812|ref|YP_003611958.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
 gi|295056271|gb|ADF61009.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter cloacae
           subsp. cloacae ATCC 13047]
          Length = 377

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  ++   KPD     +
Sbjct: 9   GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSYVINMLDGDALRELITREKPDFVVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L         +P   +  L       +  + + +                 +
Sbjct: 69  EAIATDTLLALEQEGQRVVPCAKAAKLTMNREGIRRLAAEELGLPT-SGYRFAGDKAAFL 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G   I+   ++        +   G        V+G+   
Sbjct: 128 QAVEEIGYPCIIKPVMSSSGKGQSFIRDSSTLDKA--WDYAQQGGRAGAGRVIVEGVVKF 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P ++        Q +A     A+
Sbjct: 186 DFEITLLTVSAVDGVHFCDPIGHRQEDG--DYRESWQPQQMSALALARAQEIARKTVLAL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 244 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 274


>gi|251823980|ref|NP_001156418.1| pyruvate carboxylase, mitochondrial isoform 1 [Mus musculus]
          Length = 1179

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 280

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 281 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 329


>gi|241957904|ref|XP_002421671.1| acetyl-CoA carboxylase, putative; biotin carboxylase, putative
           [Candida dubliniensis CD36]
 gi|223645016|emb|CAX39609.1| acetyl-CoA carboxylase, putative [Candida dubliniensis CD36]
          Length = 2228

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  +  +++      Q+++   G  + I +   D   L  
Sbjct: 239 AKKIGFPVMIKASEGGGGKGIRKVDDEKNFITLYNQAANEIPGSPIFIMKLAGDARHLEV 298

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                + + E++  A    + +G
Sbjct: 299 QLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIARKETFHEMENAAVRLGKLVG 354

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 355 YVSAGTVEYLYSHAEDKFYFLELNPR 380


>gi|238497716|ref|XP_002380093.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220693367|gb|EED49712.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 386

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/192 (20%), Positives = 65/192 (33%), Gaps = 21/192 (10%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG-- 183
            P V KP++G  S G+ +      +   +           +++E+Y+ G E T  VM   
Sbjct: 188 FPVVGKPVRGRGSHGVKLCHSPAQLKQHIEALL--GESPLIMVEEYLSGEEATITVMPPS 245

Query: 184 -----DASLDVTEIAVPKSDFYSYE-LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
                  S+              Y      + NS  V   ++    Y +V        + 
Sbjct: 246 PERPEHWSMLPVTRFNHADGIAPYNGSVAVTANSRVVTNDEMKDPAYGKVMEECQGVAKL 305

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAAYAGYSFREL 288
           IG     R D        +    +IN++P MT           S+    AA  G+ +  L
Sbjct: 306 IGATAPIRIDVRRFREGSEFALFDINMKPNMTGPGRPGREDQASLTAMAAAAIGWDYGTL 365

Query: 289 LLWMVEDASCLR 300
           L  ++  AS  R
Sbjct: 366 LQKIL--ASAQR 375


>gi|251823978|ref|NP_032823.2| pyruvate carboxylase, mitochondrial isoform 2 [Mus musculus]
 gi|148701106|gb|EDL33053.1| pyruvate carboxylase [Mus musculus]
          Length = 1178

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|126662565|ref|ZP_01733564.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteria bacterium BAL38]
 gi|126625944|gb|EAZ96633.1| biotin carboxylase, subunit of acetyl CoA carboxylase
           [Flavobacteria bacterium BAL38]
          Length = 449

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 34/252 (13%), Positives = 73/252 (28%), Gaps = 24/252 (9%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L              D      +G   E+     I +   I +  +
Sbjct: 47  EAVCIGPPPSNLSYLKMSNIIAAAEITNADAIHPG-YGFLSENAKFSKICQEHGIKFIGA 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    DK  +K  +   GVP  P     +               P ++K   GG  
Sbjct: 106 SPEMIDRMGDKASAKSTMIEAGVPCVPGSVGILDSYEEAEKLADEFGYPVMLKATAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIA 193
            G+  + K + +      +       + +    L +   +   +   V+GD+      ++
Sbjct: 166 KGMRAVWKKEDLLKAWEGARQESAAAFGNDGMYLEKLIEEPRHIEIQVVGDSYGKACHLS 225

Query: 194 VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPL 253
                      +     +       +  ++ + +   A  A + I   G    +FL D  
Sbjct: 226 ERDCSVQ----RRHQKLTEETPSPFMTDELREAMGTAAVKAAEYIKYEGAGTVEFLVDKH 281

Query: 254 SRKVFWLEINVQ 265
               +++E+N +
Sbjct: 282 RN-FYFMEMNTR 292


>gi|74201750|dbj|BAE28484.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 280

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 281 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 329


>gi|74186338|dbj|BAE42943.1| unnamed protein product [Mus musculus]
          Length = 1179

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 102 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 160

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 161 IAAGVPVVPGTDSPISSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 220

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 221 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 280

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 281 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 329


>gi|303326749|ref|ZP_07357191.1| putative pyruvate carboxylase [Desulfovibrio sp. 3_1_syn3]
 gi|302862737|gb|EFL85669.1| putative pyruvate carboxylase [Desulfovibrio sp. 3_1_syn3]
          Length = 1233

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 51/146 (34%), Gaps = 4/146 (2%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   GI  I  +  +     ++SS           +V+        +
Sbjct: 161 EIGLPIMLKAEGGGGGRGIFAIHNEAELEDAFFKASSMAQASFGNPRLFVEKFLSGVRHI 220

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP---LDIYKEVQRLAFLAHQAIG 239
               +      V   D     ++ +      + P+  P    ++ + ++  +    +A+G
Sbjct: 221 EIQVIADMYGNVFAFDERDCTVQRNHQKLIEITPSPWPGVTRELRERLKDYSRRLVRAVG 280

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
              ++  +FL        + +E+N +
Sbjct: 281 YHSLATVEFLVTAE-GTPYLIEVNTR 305


>gi|171056813|ref|YP_001789162.1| phosphoribosylglycinamide formyltransferase 2 [Leptothrix cholodnii
           SP-6]
 gi|254788772|sp|B1Y650|PURT_LEPCP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|170774258|gb|ACB32397.1| phosphoribosylglycinamide formyltransferase 2 [Leptothrix cholodnii
           SP-6]
          Length = 405

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 28/286 (9%), Positives = 69/286 (24%), Gaps = 31/286 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKPDLAFNVL 58
           GK    AL+  G +   +D   +                    +  ++   +PDL    +
Sbjct: 24  GKEVLIALQRLGVETIAVDRYDNAPGQQVAHQSHTIAMSDPAALRTLIEAERPDLVVPEI 83

Query: 59  HGNFGEDGL------VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
                +         V  ++                    +                 + 
Sbjct: 84  EAIATQTLEALEAEGVVRVIPTARATRLTMDREGIRRLAAETLGLPTSPYRFCDSLAELQ 143

Query: 113 VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-GDQLLIEQY 171
                 D Q  I  P ++KP+   S  G   I     +      +       +  +I + 
Sbjct: 144 AAIDGADGQPAIGYPCIVKPVMSSSGKGQSKIDGPADVQAAWDYAMVGGRVSNGRVIVEG 203

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
               +     +   +L                ++          P  +        + +A
Sbjct: 204 FIDFDYEITQLTVRALGADGQVETHFCDPIGHVQVRGDYVESWQPHPMQPAALALSRHIA 263

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
                 +G +G+   +         V++ E++ +P      +   +
Sbjct: 264 RTVTDNLGGQGLFGVELFV--KGDLVWFSEVSPRP--HDTGMVTMI 305


>gi|168182063|ref|ZP_02616727.1| pyruvate carboxylase [Clostridium botulinum Bf]
 gi|237796752|ref|YP_002864304.1| pyruvate carboxylase [Clostridium botulinum Ba4 str. 657]
 gi|182674726|gb|EDT86687.1| pyruvate carboxylase [Clostridium botulinum Bf]
 gi|229260868|gb|ACQ51901.1| pyruvate carboxylase [Clostridium botulinum Ba4 str. 657]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 81/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       +   I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCKEAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|92112093|gb|ABE73727.1| phosphoribosylglycinamide formyltransferase [Azoarcus communis]
          Length = 399

 Score = 45.6 bits (106), Expect = 0.009,   Method: Composition-based stats.
 Identities = 38/270 (14%), Positives = 83/270 (30%), Gaps = 24/270 (8%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                       ++  ++   +P L    +
Sbjct: 23  GKEVVIALQRLGVEVIAVDRYANAPGHQVAHRAHVIPMTDGTALRALVEAERPHLIVPEI 82

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                +         L E IP   +  L       +  + + +     P C +  +    
Sbjct: 83  EAIATDMLAEIEAAGLAEVIPTARTTQLTMNREGIRRLAAEELGLPTSPYCFASSLEELQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ-LLIEQYVDGIE 176
                 I  P ++KP+   S  G   ++    +      +++    +Q  +I +     E
Sbjct: 143 AAIDGGIGYPCIVKPVMSSSGKGQSTLRGPDDVRKAWDYAAAGGRVNQGRVIVEGFVDFE 202

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               ++   + D +             L+ S        P  +     K  Q +A     
Sbjct: 203 FEITLLTVRACDASGAVQTYFCEPIGHLQVSGDYVESWQPQAMRPAALKRAQEIAAAVTG 262

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            +G RG+   +        +V++ E++ +P
Sbjct: 263 NLGGRGVFGVELFV--RGDEVWFSEVSPRP 290


>gi|317046255|ref|YP_004113903.1| hypothetical protein Pat9b_0017 [Pantoea sp. At-9b]
 gi|316947872|gb|ADU67347.1| protein of unknown function DUF201 [Pantoea sp. At-9b]
          Length = 425

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/212 (16%), Positives = 71/212 (33%), Gaps = 8/212 (3%)

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
           VL G    +     + E+L  P      +A      +M  ++       P          
Sbjct: 80  VLAGFEAYNLAACRVREMLAGPDAGPCFIAPDKYAQRMALRKAWPRFPQPEFRFFASPLS 139

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL-----QSSSWNHGDQLLIEQY 171
             D++  +  P VIKP+ GG  LGI ++++   +   +       +         ++E +
Sbjct: 140 IRDARDALLYPCVIKPVDGGGGLGIWLVEEAGQLDAVINKLVDTMNYGGRGFSGFIVESW 199

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
           + G E +   + D    V      K   +  + + S         A     +      L 
Sbjct: 200 LCGDEYSLQGVVDNGHAVALTCCQKVIEHHSDAEGSISFYESGHVAMAAQQLPAAFASLM 259

Query: 232 FLAHQAIGCR-GISRSDFLFDPLSRKVFWLEI 262
               +  G R G    DF+   ++ +  +LE+
Sbjct: 260 SFCCETFGYRQGAFHIDFIV--VNGEPHFLEM 289


>gi|315499039|ref|YP_004087843.1| carbamoyl-phosphate synthase l chain ATP-binding protein
           [Asticcacaulis excentricus CB 48]
 gi|315417051|gb|ADU13692.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Asticcacaulis excentricus CB 48]
          Length = 574

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+  +  +   P  L                 ++       
Sbjct: 149 AREIGFPVLIKAVAGGGGKGMRRVDNESDFPELLKSCQGEGQSAFGDPRVLIEKYIEVPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +       +             L+          PA    +  ++   + A  A +AIG
Sbjct: 209 HIEIQLFADSHGNALHLYERDCSLQRRHQKVIEEAPAPGLPEAMRQAMGKAAVTAAKAIG 268

Query: 240 CRGISRSDFLFDPLSR----KVFWLEINVQ 265
            RG    +F+ D          +++E+N +
Sbjct: 269 YRGAGTIEFIVDVSKGIAQAAFYFMEMNTR 298


>gi|190576068|ref|YP_001973913.1| acetyl-CoA carboxylase biotin carboxylase subunit [Stenotrophomonas
           maltophilia K279a]
 gi|190013990|emb|CAQ47630.1| putative biotin carboxylase [Stenotrophomonas maltophilia K279a]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + S+   +  + S         E Y++       
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAFGNGEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          PA  I  +  +++ ++   A   IG
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGITAEQREQIGKVCTEACVRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + +++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|126649768|ref|ZP_01722004.1| pyruvate carboxylase [Bacillus sp. B14905]
 gi|126593487|gb|EAZ87432.1| pyruvate carboxylase [Bacillus sp. B14905]
          Length = 1144

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 30/244 (12%), Positives = 77/244 (31%), Gaps = 19/244 (7%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLH---GNFGEDGLVQAILELLEIPYTHSGILASALS 90
             ID    +  ++A  K D   + +H   G   E+       E   I +         + 
Sbjct: 58  KPIDAYLDIEGIIAIAK-DADVDAIHPGYGFLSENVEFARRCEEEGIIFIGPTSQHLDMF 116

Query: 91  MDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            DK++++    +  +PV P     +            +  P +IK   GG   G+ ++  
Sbjct: 117 GDKVKARSQAIAADIPVIPGTDGPVANLAEVEAFASTVGYPVMIKAALGGGGRGMRLVHA 176

Query: 147 DQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYS 201
            + +     ++ S     +   +  + +  +    +   ++GD   ++  +         
Sbjct: 177 AEELASAYERAKSEAKAAFGSDEVYVEKAIIKPKHIEVQIIGDQQGNIVHLYERDCSIQ- 235

Query: 202 YELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLE 261
              +             I  ++   +   A    + +        +FL        +++E
Sbjct: 236 ---RRHQKVVEIAPSHSISEELRNRICTAAVKIMKNVSYINAGTVEFLV--AGNDFYFIE 290

Query: 262 INVQ 265
           +N +
Sbjct: 291 VNPR 294


>gi|15677696|ref|NP_274857.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           MC58]
 gi|7227118|gb|AAF42195.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           MC58]
 gi|316985470|gb|EFV64417.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           H44/76]
 gi|325133506|gb|EGC56169.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M13399]
 gi|325139521|gb|EGC62061.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           CU385]
 gi|325143756|gb|EGC66073.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240013]
 gi|325200919|gb|ADY96374.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           H44/76]
 gi|325206773|gb|ADZ02226.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M04-240196]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|464506|sp|Q05920|PYC_MOUSE RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|293744|gb|AAA39737.1| pyruvate carboxylase [Mus musculus]
 gi|32822907|gb|AAH55030.1| Pcx protein [Mus musculus]
          Length = 1178

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENGVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDSPISSLHEAHEFSNTFGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 ATHLDPQLRSRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|254804315|ref|YP_003082536.1| Biotin carboxylase [Neisseria meningitidis alpha14]
 gi|304388399|ref|ZP_07370508.1| acetyl-CoA carboxylase subunit A [Neisseria meningitidis ATCC
           13091]
 gi|254667857|emb|CBA03904.1| Biotin carboxylase [Neisseria meningitidis alpha14]
 gi|304337611|gb|EFM03771.1| acetyl-CoA carboxylase subunit A [Neisseria meningitidis ATCC
           13091]
 gi|325204817|gb|ADZ00271.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M01-240355]
 gi|325207479|gb|ADZ02931.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           NZ-05/33]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|217966975|ref|YP_002352481.1| ATP-grasp enzyme-like protein [Dictyoglomus turgidum DSM 6724]
 gi|217336074|gb|ACK41867.1| ATP-grasp enzyme-like protein [Dictyoglomus turgidum DSM 6724]
          Length = 339

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/251 (12%), Positives = 72/251 (28%), Gaps = 16/251 (6%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           S+   L     D+   V      +D L        +        +    +  +       
Sbjct: 54  SLEEALLANDFDMVIPV----GAKDILPTLKYVREKAILPSEESIRVCFNKYQTIQLAKT 109

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
               VP    +   +     + ++  P VIKP     +  +      + +   L QS   
Sbjct: 110 CGVPVPFSIHLKSLKEIEKVKGIVKFPCVIKPSSELEAKFVFYANNQKELNYYLNQSF-- 167

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
               ++L E    G+ L   + G                     +      +        
Sbjct: 168 ----KILGENSQHGVILQEYISGMGVGFFALYKKGNPVRIFMHQRLREWPISGGASTAAK 223

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
                +++         +   G++  +F +     + + +E+N +      S+  E+A  
Sbjct: 224 AFYSDKLKNYGLTLLNTLNWNGVAMVEFKYKYDEEEFYLIEVNHKF---WGSL--ELALR 278

Query: 281 AGYSFR-ELLL 290
           AG +F  +L+ 
Sbjct: 279 AGVNFPADLVR 289


>gi|47226520|emb|CAG08536.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 2365

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 6/207 (2%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+     +V     +  +P++ S +       D+ +   +     V     +      + 
Sbjct: 203 GDKVASSIVAQSAGIPTLPWSGSSLRVDWAEEDQRQGNIISVPSEVYAKGCVQDIDMGLA 262

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELT 178
               I  P VIK  +GG   GI  ++  +  P    Q  S   G  + I Q       L 
Sbjct: 263 GAEEIGYPVVIKASEGGGGKGIRKVENSEDFPGFFRQVQSEAPGSPIFIMQLAQHARHLE 322

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D   +   +            +                  +++++R A    + +
Sbjct: 323 VQILADEYGNAISLFGRDCSIQ----RRHQKIIEEAPATVAAPSTFEQMERFAVRLAKMV 378

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       ++LF     +  +LE+N +
Sbjct: 379 GYVSAGTVEYLFSE-DGRFHFLELNPR 404


>gi|291546566|emb|CBL19674.1| acetyl-CoA carboxylase, biotin carboxylase [Ruminococcus sp. SR1/5]
          Length = 454

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V    +  P     +   +         Y++   +   
Sbjct: 148 AERIGYPVIIKAALGGGGKGMRVANTPEEFPEAYATARKESEIAFGDGTMYIEHFVVNPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L  +   V         ++ +        P+  +  ++ +++   A  A +A G
Sbjct: 208 HIEFQILADSFGNVIHLGERDCSIQRNHQKMIEESPSAAVSPELREKMGHAAVTAAKAAG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL +P   K +++E+N +
Sbjct: 268 YVNAGTIEFLLEP-DGKFWFMEMNTR 292


>gi|262051261|ref|ZP_06023485.1| hypothetical protein SA930_1692 [Staphylococcus aureus 930918-3]
 gi|259160898|gb|EEW45918.1| hypothetical protein SA930_1692 [Staphylococcus aureus 930918-3]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDS 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|86450069|gb|ABC96223.1| carbamoylphosphate synthetase [Bicellaria sp. JKM-2006]
          Length = 1304

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 375 SGSQAIKAMKEEKIQTILINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKSERPNGILL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I +   I    + I +   + D+    + V+     V    +
Sbjct: 435 TFGGQTALNCGVELERAGIFKKYNIRIMGTPIRSIIETEDRKIFSERVAEIGERVAPSEA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +   LL   +  H +QL+I++
Sbjct: 495 VYSVAEALEAAEKLGYPVMARAAFSLGGLGSGFASNKEEL--KLLAHQALAHSNQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLRGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGVIGECNIQYALNPESEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|194367421|ref|YP_002030031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Stenotrophomonas
           maltophilia R551-3]
 gi|194350225|gb|ACF53348.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas
           maltophilia R551-3]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + S+   +  + S         E Y++       
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAFGNGEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          PA  I  +  +++ ++   A   IG
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISAEQREQIGKVCTEACVRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + +++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|114576579|ref|XP_525720.2| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 7 [Pan
           troglodytes]
          Length = 2242

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576589|ref|XP_001154952.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 2 [Pan
           troglodytes]
          Length = 1838

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576583|ref|XP_001155225.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 5 [Pan
           troglodytes]
          Length = 2232

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576587|ref|XP_001155167.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 4 [Pan
           troglodytes]
          Length = 2191

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576581|ref|XP_001155357.1| PREDICTED: CAD protein isoform 6 [Pan troglodytes]
          Length = 2225

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576591|ref|XP_001154901.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 1 [Pan
           troglodytes]
          Length = 1801

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|114576585|ref|XP_001155009.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase isoform 3 [Pan
           troglodytes]
          Length = 2257

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|111024102|ref|YP_707074.1| carbamoyl phosphate synthase large subunit [Rhodococcus jostii
           RHA1]
 gi|110823632|gb|ABG98916.1| carbamoyl-phosphate synthase large subunit [Rhodococcus jostii
           RHA1]
          Length = 1122

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 48/318 (15%), Positives = 94/318 (29%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLV--------------LAHLK---P 51
           SG      L + G +VS +         D + +                  L   K    
Sbjct: 29  SGTQACRVLREEGLRVSLVNSNPATIMTDPEFADATYVEPITAEFVEKVIALEAEKGHPI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q ILE  ++    +   A     D+ + K +V+  G   
Sbjct: 89  DAVLATLGGQTALNTAVALHEQGILEKYDVELIGADFDAIQRGEDRQKFKDIVAKVGGES 148

Query: 108 CPSILV--NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S +        D+   +  P V++P      LG  +   D+ +        + +    
Sbjct: 149 ARSRVCYTMDEVRDTVAELGFPVVVRPSFTMGGLGSGMAYDDEDLTRIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   I     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDGRDNVVIVCSIENVDPVGVHTGDSITVAPAMTLTDREYQA 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  +  +     G     F  DP   ++  +E+N  P ++  S            +
Sbjct: 269 MRDLSIDILREVGVDTGGCNIQFAMDPTDGRLVVIEMN--PRVSRSSALASKATGFPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GY+  E++  +
Sbjct: 327 IAAKLAIGYTLDEIVNDI 344


>gi|86357157|ref|YP_469049.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli CFN
           42]
 gi|86281259|gb|ABC90322.1| putative carbamoyl-phosphate-synthetase protein [Rhizobium etli CFN
           42]
          Length = 397

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/264 (12%), Positives = 91/264 (34%), Gaps = 17/264 (6%)

Query: 34  SQIDVDRS--VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
             ID      +  ++ +   D       GN         + E L  P     +  + +  
Sbjct: 51  HFIDYSDPTVLLSLVENGAFDFIVPT--GNDVAYMSTTFVAEKLGFP-RFDSMETATIIH 107

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            K   +       +P   S+ ++  +      +  P ++KP       G+  +     + 
Sbjct: 108 TKQAFRNFTEQYNIPAPRSVRLHGDSPVETGALRYPLLVKPSDSFGGRGVTKVFDRTELT 167

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             +  +   +   +++IE++++G      +   ++    +  V       Y   Y     
Sbjct: 168 DAVADARRNSRAAEIVIEEFIEG-----SLHSHSAFIKDQEIVFDVFVDEYCTVYPYQVD 222

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLE-INVQPGMT 269
           +   P+++   +  + + +     + +G + G+  + FL       V+ +E +   PG  
Sbjct: 223 SSNHPSRLSETVRSKTRAIMARVVKLLGLQDGLIHTQFL--SHDDDVWIVECMRRCPGDL 280

Query: 270 PVSIFPEMAAYAGYSFRELLLWMV 293
             S+  +     G  + +L++ ++
Sbjct: 281 YGSLVDQSL---GIDYADLVVTLL 301


>gi|73966724|ref|XP_867554.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 7 [Canis familiaris]
          Length = 2316

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 19/169 (11%), Positives = 51/169 (30%), Gaps = 6/169 (3%)

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
                  +     +      + +   +  P +IK  +GG   GI  +      P    Q 
Sbjct: 271 CYSIPLELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQV 330

Query: 158 SSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            +   G  + + +       L   ++ D   +   +            +           
Sbjct: 331 QAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ----RRHQKIIEEAPA 386

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A     +++ +++ A    + +G       ++L+       ++LE+N +
Sbjct: 387 AIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELNPR 434


>gi|62988906|gb|AAY24293.1| unknown [Homo sapiens]
          Length = 2151

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 341 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 400

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 401 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 460

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 461 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 516

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 517 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 576

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 577 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 634

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 635 LALGIPLPEL 644


>gi|83591392|ref|YP_425144.1| biotin carboxylase [Rhodospirillum rubrum ATCC 11170]
 gi|83574306|gb|ABC20857.1| Biotin carboxylase [Rhodospirillum rubrum ATCC 11170]
          Length = 662

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/186 (11%), Positives = 57/186 (30%), Gaps = 20/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V    +      + +++           +++       
Sbjct: 148 ASEIGFPVMIKASAGGGGKGMRVAWSVEEAREGFVSATNEAKSSFGDDRVFIEKFIEQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E  +  ++      + +           +  ++ K +   A    + +  
Sbjct: 208 HIEIQILADGETYLYVNERECSIQRRNQKVVEEAPSPFLTPEVRKAMGEQAVALAKVVDY 267

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVE 294
           +     +F+ D      ++LE+N +              +       G    +L+ WM+ 
Sbjct: 268 KSAGTIEFIVDAARN-FYFLEMNTR----------LQVEHPVTEMITGL---DLVEWMIR 313

Query: 295 DASCLR 300
            A+  +
Sbjct: 314 IAAGEK 319


>gi|18105007|ref|NP_004332.2| CAD protein [Homo sapiens]
 gi|50403731|sp|P27708|PYR1_HUMAN RecName: Full=CAD protein; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate synthase;
           Includes: RecName: Full=Aspartate carbamoyltransferase;
           Includes: RecName: Full=Dihydroorotase
 gi|41351087|gb|AAH65510.1| Carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase [Homo sapiens]
 gi|119621017|gb|EAX00612.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase, isoform CRA_a [Homo sapiens]
 gi|119621018|gb|EAX00613.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase, isoform CRA_a [Homo sapiens]
 gi|119621019|gb|EAX00614.1| carbamoyl-phosphate synthetase 2, aspartate transcarbamylase, and
           dihydroorotase, isoform CRA_a [Homo sapiens]
          Length = 2225

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|312602729|ref|YP_004022574.1| methylcrotonyl-CoA carboxylase biotin-containing subunit
           [Burkholderia rhizoxinica HKI 454]
 gi|312170043|emb|CBW77055.1| Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC
           6.4.1.4) [Burkholderia rhizoxinica HKI 454]
          Length = 672

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/186 (13%), Positives = 55/186 (29%), Gaps = 19/186 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V+++ +     L                 V+   +   
Sbjct: 148 ADAIGYPVLLKASAGGGGKGMRVVERREEFAAALASCQREAASSFGDDRVLVEKYLVHSR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +                     ++          PA     D  + +   A  A +A+ 
Sbjct: 208 HVEVQVFADKHHNAVYLFDRDCSVQRRHQKVLEEAPAPGLSDDTRRAMGAAAVAAARAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
             G    +F+  P   + +++E+N       P +T            G    +L+ W + 
Sbjct: 268 YVGAGTVEFIMAP-GGEFYFIEMNTRLQVEHP-VTE--------RVTGL---DLVEWQLR 314

Query: 295 DASCLR 300
            A+  +
Sbjct: 315 VAAGEK 320


>gi|298291563|ref|YP_003693502.1| carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
 gi|296928074|gb|ADH88883.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Starkeya
           novella DSM 506]
          Length = 466

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 17/181 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +  +     Q+S            Y++       
Sbjct: 149 AARIGYPVMIKAAAGGGGRGIRVARHEAELATLFPQASGEARAAFGDGGLYLERFIGRAR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   + AV   +      +           A +  +    +   A    + +G 
Sbjct: 209 HIEVQVLGDGKRAVHLFERECSLQRRRQKVWEEAPAACLTSEQRVALCDSAVRLAERVGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           RG    ++LFD  + + F++E+N       P         EM    G    +L+  M+  
Sbjct: 269 RGAGTLEYLFDDETGEFFFIEMNTRIQVEHP-------VTEM--VTGI---DLVRTMISI 316

Query: 296 A 296
           A
Sbjct: 317 A 317


>gi|262278708|ref|ZP_06056493.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           calcoaceticus RUH2202]
 gi|262259059|gb|EEY77792.1| methylcrotonoyl-CoA carboxylase subunit alpha [Acinetobacter
           calcoaceticus RUH2202]
          Length = 664

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADQIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVDYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|261393201|emb|CAX50820.1| biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Neisseria meningitidis 8013]
          Length = 453

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|218526218|gb|ACK86516.1| carbamoyl-phosphate synthase [Nemoptera coa]
          Length = 478

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 125 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLTAEYVEQVIRSERPGGVLL 184

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 185 TFGGQTALNCGVELEKSGVFEKYGCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 244

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG         +    L   +  H +QL+I++
Sbjct: 245 VYSVDEALQAAEKIGYPVMARAAFSLGGLGSGFANNQDQLRS--LAVQALAHSNQLIIDK 302

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 303 SLKGW-KEVEYEVVQDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 361

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 362 AINVIRHFKVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 417

Query: 291 WM 292
            +
Sbjct: 418 KL 419


>gi|254522476|ref|ZP_05134531.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas sp.
           SKA14]
 gi|219720067|gb|EED38592.1| acetyl-CoA carboxylase, biotin carboxylase [Stenotrophomonas sp.
           SKA14]
          Length = 455

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + S+   +  + S         E Y++       
Sbjct: 149 AREIGYPVIIKAAGGGGGRGMRVVHAEASLKTSIETTKSEAKAAFGNGEVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L   +            ++          PA  I  +  +++ ++   A   IG
Sbjct: 209 HVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISAEQREQIGKVCTEACVRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + +++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGRFYFIEMNTR 292


>gi|121715398|ref|XP_001275308.1| carbamoyl-phosphate synthase, large subunit [Aspergillus clavatus
           NRRL 1]
 gi|119403465|gb|EAW13882.1| carbamoyl-phosphate synthase, large subunit [Aspergillus clavatus
           NRRL 1]
          Length = 1175

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 86/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   +PD  F 
Sbjct: 121 SGSQALKALKEAGVTSVLINPNIATIQTDHKLADEVYYLPVTPEYVTHVIERERPDGIFL 180

Query: 57  VLHGNFGEDGLVQAILELLEIPY------THSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +  VQ     +   Y      T    L ++   D         +  +    +
Sbjct: 181 SFGGQTALNLGVQMNRMGIFERYGVKVLGTSIRTLETSEDRDLFAKALNEINIPIAESIA 240

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P +++       LG    +  + +     +S +     Q+L+E+
Sbjct: 241 VSTLDEALKAAEEVGYPIIVRSAYALGGLGSGFAENPEELKNLASRSLTLAP--QILVEK 298

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 299 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 357

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 358 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 409


>gi|327305071|ref|XP_003237227.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Trichophyton rubrum CBS 118892]
 gi|326460225|gb|EGD85678.1| carbamoyl-phosphate synthase subunit arginine-specific large
           [Trichophyton rubrum CBS 118892]
          Length = 1183

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 84/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 124 SGSQALKALKEAGVRSVLINPNIATIQTDHKLADEVYYLPVTPEYVSYVIEREQPDGIFL 183

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 184 AFGGQTALNLGVQMNRMGIFDRYGVRVLGTSIKTLETSEDRDLFARALNEINIPIAESIA 243

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG         +    L S S     Q+L+E+
Sbjct: 244 VSSVDDALAAADKIGYPIIVRSAYALGGLGSGFASTPDELRD--LSSRSLTLAPQILVEK 301

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 302 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 360

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 361 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 412


>gi|302123175|gb|ADK93176.1| CAD [Dalmannia nigriceps]
          Length = 982

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 33/302 (10%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 59  SGSQAIKAMKEEKIQTVLINPNIATVQTSKGLADKCYFLPLTAEYVEQVITAERPNGVLL 118

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +     +    + I +   + D+     +       V    +
Sbjct: 119 TFGGQTALNCGVELERNGVFAKYNVRVLGTPIQSIIETEDRKLFAERVHEIGEQVAPSEA 178

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG      +  +    L   +  + +QL+I++
Sbjct: 179 VNSVEEALKAAERLGYPVMARAAFSLGGLGSGFANNESELKT--LAHQALAYSNQLIIDK 236

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 237 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNMLRTT 295

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 296 AIKIIRHFGVIGECNIQYALNPSSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 351

Query: 291 WM 292
            +
Sbjct: 352 KL 353


>gi|302506757|ref|XP_003015335.1| hypothetical protein ARB_06458 [Arthroderma benhamiae CBS 112371]
 gi|291178907|gb|EFE34695.1| hypothetical protein ARB_06458 [Arthroderma benhamiae CBS 112371]
          Length = 1336

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/296 (13%), Positives = 84/296 (28%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG +   I+ +                       V  V+   +PD  F 
Sbjct: 277 SGSQALKALKEAGVRSVLINPNIATIQTDHKLADEVYYLPVTPEYVSYVIEREQPDGIFL 336

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       + +  T    L ++   D         +  +    +
Sbjct: 337 AFGGQTALNLGVQMNRMGIFDRYGVRVLGTSIKTLETSEDRDLFARALNEINIPIAESIA 396

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P +++       LG         +    L S S     Q+L+E+
Sbjct: 397 VSSVDDALAAADKIGYPIIVRSAYALGGLGSGFASTPDELRD--LSSRSLTLAPQILVEK 454

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 455 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRTA 513

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 514 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 565


>gi|254934013|gb|ACT87615.1| carbamoylphosphate synthetase [Rhodoneura terminalis]
          Length = 730

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 82/302 (27%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 130 SGSQGVKALQEEKIQTVLINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPTGILL 189

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +               + +  T    +           K       V    +
Sbjct: 190 TFGGQTALNCGVQLQNAKVFETYNVTVLGTPVQSIVDTEDRKIFAEKINAIGEKVAPSAA 249

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + ++ DQL+I++
Sbjct: 250 VSSIDEAVLAATKIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSYSDQLIIDK 307

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 308 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYYMLRNT 366

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 367 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 422

Query: 291 WM 292
            +
Sbjct: 423 KL 424


>gi|254933953|gb|ACT87585.1| carbamoylphosphate synthetase [Chlorosea margaretaria]
          Length = 976

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +   + I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKRRIFEKYNVSVLGTPIQSIVDTEDRKIFAEKIQAIGEQVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +   +L   + +H DQL+I++
Sbjct: 496 VTSVEEALKAGKQIGYPVMARSAFSLGGLGSGFANNEEEL--KVLAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYNNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVXRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|257468961|ref|ZP_05633055.1| acetyl-CoA carboxylase, biotin carboxylase [Fusobacterium ulcerans
           ATCC 49185]
 gi|317063209|ref|ZP_07927694.1| acetyl-CoA carboxylase [Fusobacterium ulcerans ATCC 49185]
 gi|313688885|gb|EFS25720.1| acetyl-CoA carboxylase [Fusobacterium ulcerans ATCC 49185]
          Length = 450

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 78/216 (36%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+     I E+  + +            DK  ++      GVP+     + +   
Sbjct: 82  YGFLSENARFGKICEMHNLTFIGPRPECIIKMGDKATARATAIENGVPITNGTGIIKSIA 141

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-----DQLLIE 169
           +++      I+ P +IK   GG   G+ + + D+ +  +++ + +         D  + +
Sbjct: 142 EAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELAANIVAAQNEAESAFGNPDVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              D   +   +MGD   +V  +            K      +  LP     +I K +  
Sbjct: 202 FVEDPRHIEIQIMGDKHGNVIYLGERDCSIQRRHQKLIEEAPSFSLPY----NIRKAMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +AI        +FL D  +   F++E+N +
Sbjct: 258 AAVTLAKAINYDSAGTLEFLVD-KNNDFFFMEMNTR 292


>gi|257054978|ref|YP_003132810.1| pyruvate carboxylase [Saccharomonospora viridis DSM 43017]
 gi|256584850|gb|ACU95983.1| pyruvate carboxylase [Saccharomonospora viridis DSM 43017]
          Length = 1127

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/233 (15%), Positives = 74/233 (31%), Gaps = 9/233 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +         D  +   +G   E+  +    E   I +         L+ +K R+   
Sbjct: 65  EEIVNAARRAGADAVYPG-YGFLSENPDLARACEEAGITFIGPSAEVLELTGNKARAVHA 123

Query: 100 VSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               GVPV  S   +        +   +  P  +K + GG   G+ +++   S+   +  
Sbjct: 124 AKQAGVPVLGSSEPSADVDTLVEAAEELGFPLFVKAVAGGGGRGMRLVQDRASLRESIEA 183

Query: 157 SSSWN---HGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           ++       GD  +  +          V   +     E  V         ++        
Sbjct: 184 AAREAESAFGDPTVFLEKAVVQPRHIEVQILSDGTGREDGVIHLYERDCSVQRRHQKVIE 243

Query: 214 VLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + PA     ++ + +   A    + IG R     +FL D     V ++E+N +
Sbjct: 244 LAPAPNLDPELRERICADAVRFARQIGYRNAGTVEFLVDRDGNHV-FIEMNPR 295


>gi|118475185|ref|YP_891851.1| acetyl-CoA carboxylase subunit A [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414411|gb|ABK82831.1| biotin carboxylase [Campylobacter fetus subsp. fetus 82-40]
          Length = 481

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 63/188 (33%), Gaps = 25/188 (13%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVD 173
           +    I  P ++K   GG   GI V+ K+  +              +N+ +  + +    
Sbjct: 146 NYAVRIVYPVILKASGGGGGRGIRVVWKEDELESSYESCKREAKAFFNNDEVFMEKYIEK 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   ++GD   ++  +            +             I  D+ K +   A  
Sbjct: 206 PRHIEFQILGDNYGNLIHLCERDCSIQ----RRHQKVIEIAPCPTISEDLRKRMGVAAVA 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELL 289
           A +A+G       +FL D  +   +++E+N +     G+T            G    +L+
Sbjct: 262 AAKAVGYTNAGTIEFLLDDYNN-FYFMEMNTRIQVEHGVTE--------EITGV---DLI 309

Query: 290 LWMVEDAS 297
              +  A+
Sbjct: 310 SRQIRIAA 317


>gi|84686422|ref|ZP_01014316.1| methylcrotonyl-CoA carboxylase, alpha subunit [Maritimibacter
           alkaliphilus HTCC2654]
 gi|84665605|gb|EAQ12081.1| methylcrotonyl-CoA carboxylase, alpha subunit [Rhodobacterales
           bacterium HTCC2654]
          Length = 649

 Score = 45.6 bits (106), Expect = 0.010,   Method: Composition-based stats.
 Identities = 28/186 (15%), Positives = 58/186 (31%), Gaps = 21/186 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ ++++       L  + S         +  ++    +  
Sbjct: 148 ADKIGYPVLIKAVAGGGGKGMRLVERAGDFADALASARSEAKTAFGNPDVLIEKFVTSPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +          AV   +      +             +  ++   +   A  A +AIG 
Sbjct: 208 HIEVQVFGDGTEAVHLYERDCSLQRRHQKVIEEAPAPGMTQEMRAAMGEAAVRAAEAIGY 267

Query: 241 RGISRSDFLFDPLSR----KVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLW 291
            G    +F+ D          +++E+N       P +T            G    +L+ W
Sbjct: 268 AGAGTVEFIVDGSDGLRPDGFWFMEMNTRLQVEHP-VTE--------EVTGI---DLVEW 315

Query: 292 MVEDAS 297
            +  AS
Sbjct: 316 QLRVAS 321


>gi|324999504|ref|ZP_08120616.1| pyruvate carboxylase [Pseudonocardia sp. P1]
          Length = 1126

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 32/222 (14%), Positives = 69/222 (31%), Gaps = 6/222 (2%)

Query: 48  HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
               D  +   +G   E+  +        I +         L+ +K R+     + GVPV
Sbjct: 73  KAGADAVYPG-YGFMSENPDLARACREEGITFVGPPTEVLHLTGNKSRAVAAAKAAGVPV 131

Query: 108 CPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
             S            +  ++  P  +K + GG   G+  + +  ++   +  +S      
Sbjct: 132 LASSEPTTDVDALVAAAEVMEFPVFVKAVAGGGGRGMRQVTEPGALREAIEAASREAESA 191

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDI 223
                 +++   +    +    L   E  V         ++        + PA      +
Sbjct: 192 FGDGTVFLEQAVVDPRHIEVQILADAEGNVVHLFERDCSVQRRHQKVVEIAPAPNLDPRV 251

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +   A    + IG       +FL D    K  ++E+N +
Sbjct: 252 RDAICADAVRFAREIGYVNAGTVEFLLDER-GKHHFIEMNPR 292


>gi|15675594|ref|NP_269768.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes M1 GAS]
 gi|71911299|ref|YP_282849.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS5005]
 gi|209559862|ref|YP_002286334.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes NZ131]
 gi|13622800|gb|AAK34489.1| putative acetyl-CoA carboxylase biotin carboxylase subunit
           [Streptococcus pyogenes M1 GAS]
 gi|71854081|gb|AAZ52104.1| biotin carboxylase [Streptococcus pyogenes MGAS5005]
 gi|209541063|gb|ACI61639.1| Biotin carboxylase of acetyl-CoA carboxylase [Streptococcus
           pyogenes NZ131]
          Length = 454

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEMIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 257 QAAVRAAEAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 293


>gi|46108670|ref|XP_381393.1| hypothetical protein FG01217.1 [Gibberella zeae PH-1]
          Length = 1170

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 115 SGAQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVSYVIEKEKPDGIFL 174

Query: 57  VLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +  V+       E   +    + +    LS D+    + +    +P+  SI 
Sbjct: 175 SFGGQTALNLGVEMQRLGLFEKYGVKVLGTSVRTLELSEDRDLFARALEEINIPIAKSIA 234

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +++   +  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 235 VGTVEEALEAAETVGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 292

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +F      ++  +        +  + Y  ++  
Sbjct: 293 SLKGWKELEYEVVRDANNNCITVCNMENFDP-LGIHTGDSIVVAPSQTLSDEEYHMLRSA 351

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 352 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 403


>gi|319442750|ref|ZP_07991906.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium variabile DSM
           44702]
          Length = 700

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/142 (15%), Positives = 47/142 (33%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IKP  GG   G+ V+     +   L+ +             +++    T   +   
Sbjct: 159 FPVLIKPSAGGGGKGMHVVASPDDLADTLVGARREAASSFGDDTLFIEHFVDTPRHIEVQ 218

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK-EVQRLAFLAHQAIGCRGIS 244
            +      V         L+          P+ +  +  +  +   A  A ++ G RG  
Sbjct: 219 VMADAHGNVVHLGERECSLQRRHQKVIEEAPSALLDEETRARIGEAACDAARSCGYRGAG 278

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+         F++E+N +
Sbjct: 279 TVEFIVSAKRPDLFFFMEMNTR 300


>gi|299770608|ref|YP_003732634.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           DR1]
 gi|298700696|gb|ADI91261.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Acinetobacter sp.
           DR1]
          Length = 663

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/152 (14%), Positives = 51/152 (33%), Gaps = 10/152 (6%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVD 173
                I  P +IK   GG   G+ ++++ +     L          + + D L+    + 
Sbjct: 146 QQADRIGYPVLIKASAGGGGKGMSLVERSEDFLHALASCKREAKSSFGNDDVLIERYVIQ 205

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
              +   V GD   +   +            K         +P+    +    +++ A  
Sbjct: 206 PRHIEVQVFGDTHGNYVHLFERDCSVQRRHQKVLEEAPAPQMPS----EKLDAMRQAAID 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A+   G    +F+        +++E+N +
Sbjct: 262 AARAVDYVGAGTVEFIV-EQDGTAYFMEMNTR 292


>gi|289648713|ref|ZP_06480056.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           aesculi str. 2250]
          Length = 649

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHSGEMAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|226950737|ref|YP_002805828.1| pyruvate carboxylase [Clostridium botulinum A2 str. Kyoto]
 gi|226842356|gb|ACO85022.1| pyruvate carboxylase [Clostridium botulinum A2 str. Kyoto]
          Length = 1144

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   D+  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGDIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|212532809|ref|XP_002146561.1| acetyl-CoA carboxylase, putative [Penicillium marneffei ATCC 18224]
 gi|210071925|gb|EEA26014.1| acetyl-CoA carboxylase, putative [Penicillium marneffei ATCC 18224]
          Length = 2294

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 20/163 (12%), Positives = 55/163 (33%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            V            +++   I  P ++K  +GG   GI  + +++        +++   G
Sbjct: 217 FVYDMGCTHSWEEGLEAAKKIGFPVMVKASEGGGGKGIRKVDREEDFATLYSAAAAEIPG 276

Query: 164 DQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +   +   L   ++ D   +   +            +                +
Sbjct: 277 SPIFIMKLASNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIANNN 332

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 333 TFQAMERAAVSLGKLVGYVSAGTVEYLYSHSDDKFYFLELNPR 375


>gi|168179040|ref|ZP_02613704.1| pyruvate carboxylase [Clostridium botulinum NCTC 2916]
 gi|182669999|gb|EDT81975.1| pyruvate carboxylase [Clostridium botulinum NCTC 2916]
          Length = 1144

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   D+  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGDIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|163781911|ref|ZP_02176911.1| pyruvate carboxylase n-terminal domain [Hydrogenivirga sp.
           128-5-R1-1]
 gi|159883131|gb|EDP76635.1| pyruvate carboxylase n-terminal domain [Hydrogenivirga sp.
           128-5-R1-1]
          Length = 472

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 45/250 (18%), Positives = 86/250 (34%), Gaps = 21/250 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF----NVLH---GNFGEDGLVQAILELLEIPYTHSGI 84
           +   I VD     +      DLA     + +H   G   E+     + E   I +     
Sbjct: 47  EAYMIGVDPLDTYLNKQRIIDLALEVGADAIHPGYGFLAENAEFAKMCEEAGITFVGPSW 106

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
               L  DK RSK+V+   GVPV P     +            I  P ++K   GG   G
Sbjct: 107 QVIELMGDKARSKEVMKKAGVPVVPGSDGVLKDVEEAKALAKEIGYPVLLKATAGGGGRG 166

Query: 141 IIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           I + + ++ +  +   + +     +  GD LL +   +   +   V+GD   +V  +   
Sbjct: 167 IRICRNEEELVKNYESAYNEAQKAFGCGDLLLEKFIENPRHIEFQVLGDKHGNVIHLGER 226

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                    + +           +  +       +   A + IG       +F+ D    
Sbjct: 227 DCSIQ----RRNQKLVEIAPSLLLTPEKRAHYGEIVAKAAKEIGYYNAGTMEFIADEEGN 282

Query: 256 KVFWLEINVQ 265
            ++++E+N +
Sbjct: 283 -LYFIEMNTR 291


>gi|149913195|ref|ZP_01901729.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Roseobacter sp. AzwK-3b]
 gi|149813601|gb|EDM73427.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Roseobacter sp. AzwK-3b]
          Length = 460

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 29/181 (16%), Positives = 57/181 (31%), Gaps = 17/181 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   GI +   +  +     Q+ S           Y++       
Sbjct: 149 AAEVGYPVMIKAAAGGGGRGIRIAANEDELRKLAPQAQSEAQAAFGDGGLYLERALRDPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L     AV   +      +             +     +++   A    +A+  
Sbjct: 209 HIEVQILGDGTRAVHCFERECSIQRRRQKVWEEAGAVCLDEPTRQQLCTSAVAMAEAVSY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           +G    +FL++  S + F++E+N       P         EM    G    +L+  M+  
Sbjct: 269 KGAGTLEFLYEEASNQFFFIEMNTRIQVEHP-------VTEM--VTGI---DLVQEMIRI 316

Query: 296 A 296
           A
Sbjct: 317 A 317


>gi|197116560|ref|YP_002136987.1| phosphoribosylglycinamide formyltransferase 2 [Geobacter
           bemidjiensis Bem]
 gi|197085920|gb|ACH37191.1| phosphoribosylglycinamide formyltransferase, formate-dependent
           [Geobacter bemidjiensis Bem]
          Length = 392

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 41/283 (14%), Positives = 79/283 (27%), Gaps = 31/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D      +  V+    P L    +
Sbjct: 22  GKEVALEAQRLGIEVIAVDRYADAPAMQVAHRSHVIDMLDREQLDRVVRLENPSLIVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   L         IP   +  L       +  + + +                  
Sbjct: 82  EAINTVYLLELEKEGFNVIPTARAANLTMNREGIRRLAAEELGLPT-AAYRFATSMDEFR 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-DQLLIEQYVDGIEL 177
           ++   I  P V+KP+   S  G  V++    +      +     G    +I +     + 
Sbjct: 141 EAVAAIGLPCVVKPIMSSSGKGQSVLRDAADLERCFKYAMEGARGASDKVIVEQFIPFDY 200

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              ++       T    P         +          P  +   +  E QR A     A
Sbjct: 201 EITLLTVRHAGGTSFCPPIGHR-----QIDGDYHESWQPTPMVPAVLAEAQRQAEAVTGA 255

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +G RGI   +F       KV++ E++ +P      +   ++  
Sbjct: 256 LGGRGIFGVEFFVT--GDKVWFSEVSPRP--HDTGMVTMISQN 294


>gi|330867990|gb|EGH02699.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. aesculi str. 0893_23]
          Length = 561

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 64  AERIGYPVLLKATAGGGGKGMKVVEHSGEMAEALASAQREALSSFGDARMLVEKYVLTPR 123

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 124 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 183

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 184 YVGAGTVEFLLDAR-GEFFFMEMNTR 208


>gi|307293396|ref|ZP_07573242.1| phosphoribosylglycinamide formyltransferase 2 [Sphingobium
           chlorophenolicum L-1]
 gi|306881462|gb|EFN12678.1| phosphoribosylglycinamide formyltransferase 2 [Sphingobium
           chlorophenolicum L-1]
          Length = 415

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/254 (13%), Positives = 64/254 (25%), Gaps = 17/254 (6%)

Query: 19  GKACASALEDAGFKVS-QIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEI 77
               A      G +V   +D D  +   +   KPD     +      + L       + +
Sbjct: 41  AMQVAD-----GHEVFSMLDAD-LLAKAIEKHKPDFVVPEIE-AIRTEVLADFEARGVTV 93

Query: 78  PYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGS 137
             +    + +           V                  +        P VIKP+   S
Sbjct: 94  VPSARATIMTMNRDRIREVAAVELGLRTSRYRYAETLEEVLAGAAHTGLPCVIKPVMSSS 153

Query: 138 SLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
             G   ++  + +      + +   GD+  +       E          L V        
Sbjct: 154 GKGQSTVRTARELEAAWTYAVANMRGDRSRVIVE----EFIAFDYEITLLTVRSREGVSF 209

Query: 198 DFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                  +          P  +        Q +A      +G  GI   +F        V
Sbjct: 210 CPPIGHRQERGDYQESWQPTPMSSAALSAAQDMARKVVDNLGGYGIFGVEFFVKGED--V 267

Query: 258 FWLEINVQP---GM 268
            + E++ +P   GM
Sbjct: 268 IFSELSPRPHDTGM 281


>gi|254933925|gb|ACT87571.1| carbamoylphosphate synthetase [Accinctapubes albifasciata]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKVFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTTVEEALTAALQIGYPVMARSAFSLGGLGSGFANNEDELRS--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAHDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|289208772|ref|YP_003460838.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
 gi|288944403|gb|ADC72102.1| acetyl-CoA carboxylase, biotin carboxylase [Thioalkalivibrio sp.
           K90mix]
          Length = 472

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 22/143 (15%), Positives = 50/143 (34%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++K   GG   GI + +   ++  +  +  S         E +++   +    + 
Sbjct: 150 IGYPVMLKATSGGGGRGIRLCEDPDALRRNFDRVRSEATRAFGSTEIFLEKAVVNPRHIE 209

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRG 242
              L  T             ++        + P+    +   + +  LA  A Q +G + 
Sbjct: 210 VQILADTHGNAVHLYERDCSVQRRHQKLIEIAPSPQLNEAQRERLGALAVTAAQTVGYQN 269

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL D      +++E+N +
Sbjct: 270 AGTVEFLMDG-DDTFYFMEMNTR 291


>gi|220912174|ref|YP_002487483.1| carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
 gi|219859052|gb|ACL39394.1| Carbamoyl-phosphate synthase L chain ATP-binding [Arthrobacter
           chlorophenolicus A6]
          Length = 733

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 28/255 (10%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----LVN 114
           +G   E+      L+   I +   G+ A  +  DK+RSK  V+  GVPV P +    + +
Sbjct: 105 YGFLSENADFARALDAAGIAFMGPGVEALNIMGDKIRSKNHVAGYGVPVVPGVARPGMTD 164

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
              +++   +  P +IKP  GG   G+ V++K   +P  L  +       +      L  
Sbjct: 165 AELIEAAPAVGFPLLIKPSAGGGGKGMHVVEKPGDLPAVLATARRVAASAFGDDTLFLER 224

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQ 228
                  +   V+ D+  +V  +   +        K      + +L       D+   + 
Sbjct: 225 LVTTPRHIEVQVLADSHGNVIHLGERECSLQRRHQKVIEEAPSPLLEGLPHGADVRDRIG 284

Query: 229 RLAFLAHQAIGCRGISRSDFLF-DPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAG 282
             A  A +++   G    +FL  D    + F++E+N       P         EM    G
Sbjct: 285 EAACNAARSVNYTGAGTVEFLVSDDAPDEFFFMEMNTRLQVEHP-------VTEM--VTG 335

Query: 283 YSFRELLLWMVEDAS 297
               +L+ W V  A+
Sbjct: 336 L---DLVEWQVRIAA 347


>gi|168183213|ref|ZP_02617877.1| ATP domain protein [Clostridium botulinum Bf]
 gi|237796158|ref|YP_002863710.1| carbamoyl phosphate synthase-like protein [Clostridium botulinum
           Ba4 str. 657]
 gi|182673591|gb|EDT85552.1| ATP domain protein [Clostridium botulinum Bf]
 gi|229262630|gb|ACQ53663.1| ATP-grasp domain protein [Clostridium botulinum Ba4 str. 657]
          Length = 342

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/278 (14%), Positives = 86/278 (30%), Gaps = 23/278 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
            ++ ID   S+  +    K DL   +    F      +   + L      S     ++  
Sbjct: 50  DITYID---SLLNICKKEKIDLLIPLYEREFNTLCNNREKFKELGTTLLLSHKKLISICN 106

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIVIKKDQ 148
           DK  + +      + +  S           ++   ++ P+++KPL G  S G+       
Sbjct: 107 DKWNTYKFFIENNINIPISYTKENIENILKNNPEELNFPFILKPLDGMGSAGVFKANNKT 166

Query: 149 SI-----PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
            +      +       +  G +  I+   D       ++    ++V    V KS   +++
Sbjct: 167 QLEFFKDYIKEPIIQEFVEGTEYTIDVLCDLKGEIISIVPRERIEVRSGEVSKSKTVNHK 226

Query: 204 LKYS------SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                     +    H+   K+   +  +      L        G      +      ++
Sbjct: 227 EIIKATLDLVNKLKQHIEEYKLYCKVASKNFNTLSLEKDEASVIGPLTIQCIVTKEK-EI 285

Query: 258 FWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
            ++EIN + G       P      G  + +    MVE+
Sbjct: 286 KFIEINPRFG----GGVPLSFEA-GVDYGKYFRCMVEE 318


>gi|34398207|gb|AAQ67193.1| CAD [Rhingia nasica]
          Length = 1295

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P+    
Sbjct: 366 SGSQAIKAMKEEKIQTILINPNIATVQTSKGLADKCYFLPLTPEYVEQVIKAERPNGVLL 425

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 426 TFGGQTALNCGVELEKAGVFAKYNVKILGTPIKSIIETEDRKIFADRVNEIGEKVAPSEA 485

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG         +   +L   +  H  QL+I++
Sbjct: 486 VYSVQEALEAAERLGYPVMARAAFSLGGLGSGFADNKDELS--ILAQQALAHSSQLVIDK 543

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 544 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 602

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 603 AIKVIRHFGVVGECNIQYALNPFSEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 658

Query: 291 WM 292
            +
Sbjct: 659 KL 660


>gi|325127519|gb|EGC50445.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           N1568]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|260577837|ref|ZP_05845771.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258604064|gb|EEW17307.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 702

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IKP  GG   G+ ++++ + +   L+ +             +++    T   +   
Sbjct: 162 FPVLIKPSAGGGGKGMHLVEEPEKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQ 221

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            +  +   V         L+          P+ +  +  ++     A  A +A G  G  
Sbjct: 222 IVADSHGNVIHLGERECSLQRRHQKVIEEAPSALLDEKTRQEIGEAACDAARACGYCGAG 281

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+       + F++E+N +
Sbjct: 282 TVEFIVSAKQPERFFFMEMNTR 303


>gi|183219975|ref|YP_001837971.1| biotin carboxylase [Leptospira biflexa serovar Patoc strain 'Patoc
           1 (Paris)']
 gi|189910099|ref|YP_001961654.1| acetyl/propionyl-CoA carboxylase subunit alpha [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774775|gb|ABZ93076.1| Acetyl/propionyl-CoA carboxylase, alpha subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167778397|gb|ABZ96695.1| Biotin carboxylase (A subunit of acetyl-CoA carboxylase; ACC)
           [Leptospira biflexa serovar Patoc strain 'Patoc 1
           (Paris)']
          Length = 480

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 42/239 (17%), Positives = 82/239 (34%), Gaps = 16/239 (6%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           ++VD+ +   LA    D      +G   E+      LE   I +      +     DK+ 
Sbjct: 63  LNVDKVIEACLA-TGADAVHPG-YGFLSENTDFAKKLEQHGISFIGPKPHSIEAMGDKIG 120

Query: 96  SKQVVSSCGVPVCPSI----LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           S+ +V+  GVPV P                  I  P + K   GG   G+  I     + 
Sbjct: 121 SRILVAKSGVPVVPGYEGESQEMSVFKKEADKIGYPVMAKASAGGGGKGMRRINSSDELE 180

Query: 152 LDL-----LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             +        S++     LL +  V+   +   + GD   ++  +            K 
Sbjct: 181 AGILSAKREAMSAFGDDRILLEKYIVNPRHVEFQIFGDTQGNIIHLHERDCSLQRRHQKV 240

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    P+     +  ++   A +A +A+   G    +F+    + + ++LE+N +
Sbjct: 241 VEETPAPNFPSS----LKSKMAEAAVMAGKAVQYEGAGTVEFIL-GENGEFYFLEMNTR 294


>gi|161869354|ref|YP_001598521.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           meningitidis 053442]
 gi|161594907|gb|ABX72567.1| acetyl-CoA carboxylase biotin carboxylase component [Neisseria
           meningitidis 053442]
          Length = 430

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 126 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 185

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 186 HVEIQVIADEHGNAIYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 245

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 246 YRGAGTFEFLY--EDGEFFFIEMNTR 269


>gi|68536636|ref|YP_251341.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
 gi|68264235|emb|CAI37723.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
          Length = 702

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IKP  GG   G+ ++++ + +   L+ +             +++    T   +   
Sbjct: 162 FPVLIKPSAGGGGKGMHLVEEPEKLASALVSARREAASSFGDDTLFLEHFVDTPRHIEVQ 221

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGIS 244
            +  +   V         L+          P+ +  +  ++     A  A +A G  G  
Sbjct: 222 IVADSHGNVIHLGERECSLQRRHQKVIEEAPSALLDEKTRQEIGEAACDAARACGYCGAG 281

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+       + F++E+N +
Sbjct: 282 TVEFIVSAKQPERFFFMEMNTR 303


>gi|319941748|ref|ZP_08016070.1| biotin carboxylase [Sutterella wadsworthensis 3_1_45B]
 gi|319804681|gb|EFW01548.1| biotin carboxylase [Sutterella wadsworthensis 3_1_45B]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 34/222 (15%), Positives = 76/222 (34%), Gaps = 19/222 (8%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL- 112
            +H   G   E+      +E     +      +  L  DK+ +KQ +   GVP  P    
Sbjct: 77  AIHPGYGFLSENADFAEQVESSGFAFIGPRPESIRLMGDKVSAKQAMRDAGVPCVPGSDG 136

Query: 113 ----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHG 163
                 +  + +   I  P +IK   GG   G+ V++ + ++   +  +       + + 
Sbjct: 137 ALSEDPQEIIQTARKIGYPIIIKASGGGGGRGMRVVRTEAALLTSVNMTREEARVAFGNP 196

Query: 164 DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
              + +   +   +   V+ D   +   +            K         +P +    +
Sbjct: 197 TVYMEKFLENPRHIEIQVLSDNFQNAVYLGERDCSMQRRNQKVIEEAPAFGIPRRAIEKL 256

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     A + IG RG    +FL+   + + +++E+N +
Sbjct: 257 GS----RCVEACRRIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|317506872|ref|ZP_07964644.1| pyruvate carboxylase [Segniliparus rugosus ATCC BAA-974]
 gi|316254800|gb|EFV14098.1| pyruvate carboxylase [Segniliparus rugosus ATCC BAA-974]
          Length = 1157

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/243 (15%), Positives = 83/243 (34%), Gaps = 8/243 (3%)

Query: 28  DAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +         D  +   +G   E+  +        I +       
Sbjct: 55  EVGHPVRAYLDVDE-IVATAKRCGADAVYPG-YGFLSENPRLARACAEAGIAFIGPSAEI 112

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD---SQHLISPPYVIKPLKGGSSLGIIV 143
             L+ DK R+     + G+PV  S   +    +   +   ++ P  +K + GG   G+  
Sbjct: 113 LELAGDKSRAVAAARAAGLPVLASAAPSADVDELLAAAESMTFPVFVKAVAGGGGRGMRR 172

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           + + + +   +L +S            +++   +    +    L      V         
Sbjct: 173 VAEPKELRDAILAASREAEAAFGDGTVFLEQAVINPRHIEVQILADWHGEVVHLYERDCS 232

Query: 204 LKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           L+        + PA     ++ +++   A    + IG R     +FL D    +  ++E+
Sbjct: 233 LQRRHQKVIELAPAPNLDPELREKICADAVAFARHIGYRCAGTVEFLVDEQ-GRHVFIEM 291

Query: 263 NVQ 265
           N +
Sbjct: 292 NPR 294


>gi|291387039|ref|XP_002709852.1| PREDICTED: carbamoylphosphate synthetase 2/aspartate
           transcarbamylase/dihydroorotase [Oryctolagus cuniculus]
          Length = 2192

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/309 (11%), Positives = 91/309 (29%), Gaps = 43/309 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +     Q+L+++
Sbjct: 535 ASSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNKEELSALVAPAFAHT--SQVLVDK 592

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G               + + V   +       ++  +        +    Y+ +++ 
Sbjct: 593 SLKGW-KEIEYEVVRDAYGSCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQT 651

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA-- 281
           A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A  
Sbjct: 652 AIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAKL 709

Query: 282 --GYSFREL 288
             G    EL
Sbjct: 710 ALGIPLPEL 718


>gi|210135244|ref|YP_002301683.1| biotin carboxylase [Helicobacter pylori P12]
 gi|210133212|gb|ACJ08203.1| biotin carboxylase [Helicobacter pylori P12]
          Length = 459

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 46/263 (17%), Positives = 91/263 (34%), Gaps = 32/263 (12%)

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
            + D  F   +G   E+     I     + +        AL  DK ++K V+   G+PV 
Sbjct: 87  FEADAIFPG-YGFLSENQNFVEICSHHSLEFIGPSAKVMALMSDKSKAKSVMKEAGMPVI 145

Query: 109 PS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD---QSIPLDLLQSSSWN 161
                 +   +   +    I  P +IK   GG   G+ V++     +++ L     +   
Sbjct: 146 EGSEGLLKSYQEAEEIADKIGYPVIIKAAAGGGGRGMRVVEDKSKLKNLYLAAETEALSA 205

Query: 162 HGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
            GD    L +       +   ++ D   +V  +            K S   +  V+  + 
Sbjct: 206 FGDGSVYLEKFINKPKHIEVQILADKHGNVIHVGRKGIARCKDASKSSLKETPAVVLEEG 265

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAA 279
             +    +   A  A + IG  G    +FL D   +  +++E+N +              
Sbjct: 266 VRE---RLLETAIKAAKYIGYVGAGTFEFLLDSNMKDFYFMEMNTR----------LQVE 312

Query: 280 Y------AGYSFRELLLWMVEDA 296
           +      +G +   L+ WM++ A
Sbjct: 313 HTISEMVSGLN---LIEWMIKIA 332


>gi|158451273|gb|ABW38997.1| putative CAD trifunctional protein [Pseudimbrasia deyrollei]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + ++S    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALKAAVQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451205|gb|ABW38963.1| putative CAD trifunctional protein [Lobobunaea angasana]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + ++S    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALKAAVQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451199|gb|ABW38960.1| putative CAD trifunctional protein [Imbrasia petiveri]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + ++S    V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALKAAVQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|121634224|ref|YP_974469.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis FAM18]
 gi|120865930|emb|CAM09667.1| putative acetyl-CoA carboxylase biotin carboxylase component
           [Neisseria meningitidis FAM18]
 gi|325131504|gb|EGC54211.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           M6190]
 gi|325137550|gb|EGC60132.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           ES14902]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 9/220 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+      +E     +         L  DK+ +K  +   GVP  P  
Sbjct: 76  DAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGS 134

Query: 112 L-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                      +     +  P +IK   GG   G+ V++K + +   +  + +       
Sbjct: 135 DGALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFG 194

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    +                L+          PA    +  + 
Sbjct: 195 NPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERA 254

Query: 227 VQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A   A + IG RG    +FL+     + F++E+N +
Sbjct: 255 KIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|90579173|ref|ZP_01234983.1| hypothetical protein VAS14_05688 [Vibrio angustum S14]
 gi|90440006|gb|EAS65187.1| hypothetical protein VAS14_05688 [Vibrio angustum S14]
          Length = 324

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 55/297 (18%), Positives = 94/297 (31%), Gaps = 44/297 (14%)

Query: 11  EREVSLSS----GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
           ER +S+ +    G A A          S    D+ +G +      DL F+   G      
Sbjct: 28  ERGISVVTNLDLGNAVA-------HDGSIFCNDQDMGSL------DLFFSYNAGQQTPYQ 74

Query: 67  LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD----SQH 122
                     IP   +   A  L+ DK ++ Q++   G+     ++ N+  +D      H
Sbjct: 75  TYLYQTLSTIIPT-INNYEAFELTEDKFKTAQLLKRHGINTPDYVVCNKKNIDNLKKHFH 133

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
                 + KP+ G    GII ++ ++ + L      +       L        E      
Sbjct: 134 FWQGQAICKPINGWGGNGIIKLESERDLDLIYPYIVNQASPQLYL--------ERIIEND 185

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
                         + +     + S   +       I  +   EV  LA  A +  G   
Sbjct: 186 FTDYRVDIVDDQFIACYGRKAAEGSWKTNITSGGNVIQREAPPEVIELALKAARITGLE- 244

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR--------ELLLW 291
           I+  D ++D   +K   LE+N  P        PE     G +F         EL+  
Sbjct: 245 IAGVDIIYDIEHQKYVVLEVNGIPAFAT----PEQ-EKMGINFNAKKIQCIVELIDR 296


>gi|324998687|ref|ZP_08119799.1| acetyl/propionyl-CoA carboxylase, biotin carboxylase subunit fused
           with biotin carboxyl carrier subunit [Pseudonocardia sp.
           P1]
          Length = 513

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 25/147 (17%), Positives = 49/147 (33%), Gaps = 5/147 (3%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P ++KP  GG   G+  +   + +   +  +     G        V+ +  T   + 
Sbjct: 151 IGYPVLLKPSAGGGGKGMREVHSPEGLADAIAGARREARGSFGDDTLLVERLVTTPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
              +      V         L+          P+ +  D  +    R A  A +A+G  G
Sbjct: 211 IQVMADAHGGVVHLGERECSLQRRHQKIIEEAPSALLTDAQRAEMGRAACEAARAVGYTG 270

Query: 243 ISRSDFLFD----PLSRKVFWLEINVQ 265
               +F+          + F+LE+N +
Sbjct: 271 AGTVEFIVSGDRAASDLEFFFLEMNTR 297


>gi|126740372|ref|ZP_01756060.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
 gi|126718508|gb|EBA15222.1| methylcrotonyl-CoA carboxylase, alpha subunit [Roseobacter sp.
           SK209-2-6]
          Length = 647

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 55/187 (29%), Gaps = 23/187 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ +++K       L  +           +  ++       
Sbjct: 149 AGKIGYPVLIKAVAGGGGKGMRLVEKSAEFEDALRSAQGEATTAFGNPDVLIEKYIQQPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +           V   +      +             +  ++ + +      A +AIG 
Sbjct: 209 HIEVQVFGDGTHTVHLFERDCSLQRRHQKVIEEAPAPGMTAEMREAMGHAGVRAAEAIGY 268

Query: 241 RGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLL 290
           +G    +F+ D          +++E+N +              +       G    +L+ 
Sbjct: 269 KGAGTVEFIVDGSEGLRPDGFWFMEMNTR----------LQVEHPVTEAITGI---DLVE 315

Query: 291 WMVEDAS 297
           W +  AS
Sbjct: 316 WQLRVAS 322


>gi|187479842|ref|YP_787867.1| methylcrotonyl-CoA carboxylase subunit alpha [Bordetella avium
           197N]
 gi|115424429|emb|CAJ50982.1| methylcrotonyl-CoA carboxylase alpha chain [Bordetella avium 197N]
          Length = 668

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 43/146 (29%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V++   +    L                 ++       
Sbjct: 148 ADKIGYPVLIKASAGGGGKGMRVVESSAAFLEALASCQREARASFGDDRVLIERYLQKPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +       +             ++          PA  +  +  + +   A  A +A+ 
Sbjct: 208 HIEIQVFADSHGQCVYLFERDCSVQRRHQKVIEEAPAPGMTPERRQAMGEAAVAAARAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F+      + +++E+N +
Sbjct: 268 YVGAGTVEFIV-ESDGRFYFMEMNTR 292


>gi|83945468|ref|ZP_00957815.1| propionyl-CoA carboxylase, alpha subunit [Oceanicaulis alexandrii
           HTCC2633]
 gi|83851044|gb|EAP88902.1| propionyl-CoA carboxylase, alpha subunit [Oceanicaulis alexandrii
           HTCC2633]
          Length = 676

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 15/184 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   G+ + + D  +      + +            ++       
Sbjct: 148 ANDIGYPVMIKASAGGGGKGMRIARSDDEVREGFKAARNEAKSSFGDDRILIEKFVEKPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V   +     ++  +       P+    D   K++   A    +A+ 
Sbjct: 208 HIEIQVLGDKHGNVVHLNERECSVQRRNQKVLEEAPSPFLDDATRKKMGDQAVALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY--AGYSFR-ELLLWMVEDA 296
                  +F+ DP  R  ++LE+N +              +     +   +L+  M+  A
Sbjct: 268 YDSAGTVEFIVDP-DRNFYFLEMNTR----------LQVEHPVTELTHEIDLVEQMIRVA 316

Query: 297 SCLR 300
           S  +
Sbjct: 317 SGQK 320


>gi|325129517|gb|EGC52344.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           OX99.30304]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    +                L+          PA    +  +     A   A + IG
Sbjct: 209 HVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERAKIGNACADACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|311693893|gb|ADP96766.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine bacterium
           HP15]
          Length = 664

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P ++K + GG   G+ V+         L  +           +  ++       
Sbjct: 148 AEKCGFPLLLKAVAGGGGKGMRVVNNMGEFDDALAAAKREAQNAFGNPDMLIERYLTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +        +            ++          PA    +  ++     A  A QAI 
Sbjct: 208 HVEIQVFCDQDGKGVYLAERDCSVQRRHQKVLEEAPAPGLSEETRKAMGEAAVRAAQAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL+D +    F++E+N +
Sbjct: 268 YVGAGTVEFLYD-VDGSFFFMEMNTR 292


>gi|325680937|ref|ZP_08160474.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Ruminococcus albus 8]
 gi|324107401|gb|EGC01680.1| Carbamoyl-phosphate synthase L chain, ATP binding domain protein
           [Ruminococcus albus 8]
          Length = 399

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 37/295 (12%), Positives = 89/295 (30%), Gaps = 30/295 (10%)

Query: 18  SGKAC--ASALEDAGFKVSQIDV--------------------DRSVGLVLAHLKPDLAF 55
           S +        +  G+     D                       +V  V      D   
Sbjct: 12  SAQQIVAIETAKRLGYYTVVCDYLTDNPGQYVCDKFYLVSTTDKEAVLEVAKAENIDGV- 70

Query: 56  NVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNR 115
            + + +         + + L +P      +    + DK R+    +    P   S     
Sbjct: 71  -IAYASDPAAPTAAYVAQKLGLPTNPYSAVDILCNKDKFRAFLAENGFDCPDAKSYTCEA 129

Query: 116 FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
             +  +     P ++KP+    S G+ ++K        +  + S++   +++ E+++   
Sbjct: 130 DALADKENFDYPIIMKPVDSSGSKGVTILKDSAGYEDAVKFAFSFSRAKKIIAEKFIVNK 189

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
             T         D   I     + +        +    V PAK+  +  ++ +       
Sbjct: 190 YSTNIGGDIFINDGKVIIWGLMNCFRGHSPNPLVPGGEVFPAKLTDEEMQKAKDTLQNMV 249

Query: 236 QAIG-CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA-GYSFREL 288
             +G   G    + + D    +V+ ++I  + G    ++ P   +   G    E+
Sbjct: 250 TKLGLVSGCVNVELMLD-NDGRVYLIDIGPRAG---GNMIPIQLSAIFGVDIVEM 300


>gi|254933969|gb|ACT87593.1| carbamoylphosphate synthetase [Dichromodes sp. JCR-2009]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKARIFEKYHVXVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      +  +   +L   + +H DQL+I++
Sbjct: 496 VTSVEEALVAAKQIGYPVMARSAFSLGGMGSGFANNEDELR--VLAHQALSHSDQLVIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSXREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|218526220|gb|ACK86517.1| carbamoyl-phosphate synthase [Lertha barbara]
          Length = 722

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 132 SGSQAIKALKEENIQTVLINPNIATVQTSKGLADKVYFLPLTAEYVEQVIRSERPGGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 192 TFGGQTALNCGVELERSGVFEKYGCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG         +    L   +  H +QL+I++
Sbjct: 252 VYSVDEALQAAEKIGYPVMARAAFSLGGLGSGFANNQDQLRS--LAVQALAHSNQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +     G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 369 AINVIRHFKVVGECNIQYALNPNSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|255945373|ref|XP_002563454.1| Pc20g09590 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211588189|emb|CAP86288.1| Pc20g09590 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1247

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 23/183 (12%), Positives = 58/183 (31%), Gaps = 18/183 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P ++K   GG  +G+++ K  + +   L Q  S           +++       
Sbjct: 149 ANTLGYPVMLKATGGGGGMGLMICKSVEEVRQSLAQVRSRGETLFKNAGVFMERYYPESH 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD---IYKEVQRLAFLAHQA 237
            +                     ++          P+        + +++   A    ++
Sbjct: 209 HVEVQVFGNGLGDAIHVGERECSIQRRHQKVVEECPSPFVEKHPGLREKLTSAAIALTKS 268

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMV 293
           I        ++L D +S   F+LE+N             +    G +   +  +L+  M+
Sbjct: 269 IRYGSAGTVEYLVDDVSGDFFFLEMNT-----------RLQVEHGITELCYGLDLVKLML 317

Query: 294 EDA 296
           + A
Sbjct: 318 QQA 320


>gi|158451139|gb|ABW38930.1| putative CAD trifunctional protein [Copaxa multifenestrata]
          Length = 733

 Score = 45.2 bits (105), Expect = 0.010,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSRIFEKYNVCVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   +L   + +H DQL+I++
Sbjct: 496 VTSVEEALVAAVQIGYPVMARSAFSLGGLGSGFANNEDELR--VLSHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|332840376|ref|XP_003313980.1| PREDICTED: acetyl-CoA carboxylase 2 isoform 1 [Pan troglodytes]
 gi|332840378|ref|XP_003313981.1| PREDICTED: acetyl-CoA carboxylase 2 isoform 2 [Pan troglodytes]
          Length = 2458

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/207 (15%), Positives = 74/207 (35%), Gaps = 6/207 (2%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+     +V   L++  +P++ SG+       D  + K++     V     +      ++
Sbjct: 383 GDKIASTVVAQTLQVPTLPWSGSGLTVEWTEDDLQQGKRISVPQDVYDKGCVKDVDEGLE 442

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELT 178
           +   I  P +IK  +GG   GI   +  +  P+   Q  S   G  +  ++       L 
Sbjct: 443 AAERIGFPLMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPIFLMKLAQHARHLE 502

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D   +   +            K        + P      I++ +++ A    + +
Sbjct: 503 VQILADQYGNAVSLFGRDCSIQRRHQKIVEEAPATIAPL----AIFEFMEQCAVRLAKTV 558

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       ++L+       ++LE+N +
Sbjct: 559 GYVSAGTVEYLYS-QDGSFYFLELNPR 584


>gi|322807620|emb|CBZ05195.1| pyruvate carboxyl transferase [Clostridium botulinum H04402 065]
          Length = 1144

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/285 (13%), Positives = 81/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNR----FTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +          ++       P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIRSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G R     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYRSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|312438509|gb|ADQ77580.1| pyruvate carboxylase [Staphylococcus aureus subsp. aureus TCH60]
          Length = 1073

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/217 (12%), Positives = 67/217 (30%), Gaps = 10/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+           I +    +    +  DK++++       +PV P    
Sbjct: 3   AIHPGYGFLSENEQFARRCAEEGIKFIGPHLEHLDMFGDKVKARTTAIKADLPVIPGTDG 62

Query: 114 NRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
              + +     +     P +IK   GG   G+ +++++  +     ++ S         E
Sbjct: 63  PIKSYELAKEFAEEAGFPLMIKATSGGGGKGMRIVREESELEDAFHRAKSEAEKSFGNSE 122

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +      +         ++        V P+      + + + 
Sbjct: 123 VYIERYIDNPKHIEVQVIGDEHGNIVHLFERDCSVQRRHQKVVEVAPSVGLSSTLRQRIC 182

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A      I        +FL      + F++E+N +
Sbjct: 183 DAAIQLMINIKYVNAGTVEFLV--SGDEFFFIEVNPR 217


>gi|300123870|emb|CBK25141.2| unnamed protein product [Blastocystis hominis]
          Length = 1477

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD-------RSVGL--------------VLAHLKPDLAFN 56
           SG     A+ + G +V  ++ +       +++                V+   KPD    
Sbjct: 423 SGSQAIKAMREEGLEVVLMNPNIATVQTSKNLADKVYFLPVTPSFVIRVIEKEKPDCMLV 482

Query: 57  VLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
            + G    +          L    +    + I     + D+   + +    +  + +   
Sbjct: 483 SMGGQTALNVGIKLFESGELARHNVHVLGTPIQTVIDTEDRELFKERLDEINEKLALSYP 542

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  ++    I  P +++       LG    +  + +   + +S +    DQLLI++
Sbjct: 543 ATSVEEAIEVAEKIGYPVLVRSAFALGGLGSGFAENREELVELVSRSFTC--SDQLLIDK 600

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 + V   + +     ++  +        +    Y  ++  
Sbjct: 601 DLRGW-KEIEYEVVRDSYDNCVTVCNMENFDPLGIHTGDSIVVAPSQTLTNREYMLLRDT 659

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +  +P S +   +E+N +  ++  S     +   GY    +  
Sbjct: 660 AIKVVRHLGVIGECNIQYALNPDSEEYCIIEVNAR--LSRSS--ALASKATGYPLAYVAA 715

Query: 291 WM 292
            +
Sbjct: 716 KL 717


>gi|221502459|gb|EEE28186.1| carbamoyl phosphate synthetase II, putative [Toxoplasma gondii VEG]
          Length = 1699

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++    V  ++                      D  V  V+    PD    
Sbjct: 504 SGSQAIKALKEQNIFVVVVNPNIATVQTSQHMADRVYFLPVTDEFVTKVIEKEMPDGILC 563

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G            Q +L         S I A   + D+      +      V    +
Sbjct: 564 TFGGQTALNCAVKLHEQGVLAKFGCKILGSPIEAIIATEDRKVFAAKLEEIGEKVAESAA 623

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG    +      +  +   +++H  Q+ +++
Sbjct: 624 ATNTEEAVQAAKAIGYPVLIRAAFALGGLGSGFAED--EETVRRICKEAFSHSSQVFVDK 681

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 682 SLKGW-KEVEYEVVRDCKNNCITVCNMENLDPLGIHTGDSIVVAPSQTLSNEDYYRLRDT 740

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  DP S K + +E+N +  ++  S     +   GY    +  
Sbjct: 741 ALKVIRHFGIVGECNIQYALDPNSEKYYIVEVNAR--LSRSS--ALASKATGYPLAYIAA 796

Query: 291 WM 292
            +
Sbjct: 797 KL 798


>gi|221482162|gb|EEE20523.1| carbamoyl phosphate synthetase II, putative [Toxoplasma gondii GT1]
          Length = 1699

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++    V  ++                      D  V  V+    PD    
Sbjct: 504 SGSQAIKALKEQNIFVVVVNPNIATVQTSQHMADRVYFLPVTDEFVTKVIEKEMPDGILC 563

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G            Q +L         S I A   + D+      +      V    +
Sbjct: 564 TFGGQTALNCAVKLHEQGVLAKFGCKILGSPIEAIIATEDRKVFAAKLEEIGEKVAESAA 623

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG    +      +  +   +++H  Q+ +++
Sbjct: 624 ATNTEEAVQAAKAIGYPVLIRAAFALGGLGSGFAED--EETVRRICKEAFSHSSQVFVDK 681

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 682 SLKGW-KEVEYEVVRDCKNNCITVCNMENLDPLGIHTGDSIVVAPSQTLSNEDYYRLRDT 740

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  DP S K + +E+N +  ++  S     +   GY    +  
Sbjct: 741 ALKVIRHFGIVGECNIQYALDPNSEKYYIVEVNAR--LSRSS--ALASKATGYPLAYIAA 796

Query: 291 WM 292
            +
Sbjct: 797 KL 798


>gi|237843095|ref|XP_002370845.1| carbamoyl phosphate synthetase II [Toxoplasma gondii ME49]
 gi|211968509|gb|EEB03705.1| carbamoyl phosphate synthetase II [Toxoplasma gondii ME49]
          Length = 1699

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++    V  ++                      D  V  V+    PD    
Sbjct: 504 SGSQAIKALKEQNIFVVVVNPNIATVQTSQHMADRVYFLPVTDEFVTKVIEKEMPDGILC 563

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G            Q +L         S I A   + D+      +      V    +
Sbjct: 564 TFGGQTALNCAVKLHEQGVLAKFGCKILGSPIEAIIATEDRKVFAAKLEEIGEKVAESAA 623

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG    +      +  +   +++H  Q+ +++
Sbjct: 624 ATNTEEAVQAAKAIGYPVLIRAAFALGGLGSGFAED--EETVRRICKEAFSHSSQVFVDK 681

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 682 SLKGW-KEVEYEVVRDCKNNCITVCNMENLDPLGIHTGDSIVVAPSQTLSNEDYYRLRDT 740

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  DP S K + +E+N +  ++  S     +   GY    +  
Sbjct: 741 ALKVIRHFGIVGECNIQYALDPNSEKYYIVEVNAR--LSRSS--ALASKATGYPLAYIAA 796

Query: 291 WM 292
            +
Sbjct: 797 KL 798


>gi|28631588|gb|AAL27793.2| carbamoyl phosphate synthetase II [Toxoplasma gondii]
          Length = 1687

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/302 (13%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDV---------------------DRSVGLVLAHLKPDLAFN 56
           SG     AL++    V  ++                      D  V  V+    PD    
Sbjct: 492 SGSQAIKALKEQNIFVVVVNPNIATVQTSQHMADRVYFLPVTDEFVTKVIEKEMPDGILC 551

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G            Q +L         S I A   + D+      +      V    +
Sbjct: 552 TFGGQTALNCAVKLHEQGVLAKFGCKILGSPIEAIIATEDRKVFAAKLEEIGEKVAESAA 611

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  + +   I  P +I+       LG    +      +  +   +++H  Q+ +++
Sbjct: 612 ATNTEEAVQAAKAIGYPVLIRAAFALGGLGSGFAED--EETVRRICKEAFSHSSQVFVDK 669

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +  + Y  ++  
Sbjct: 670 SLKGW-KEVEYEVVRDCKNNCITVCNMENLDPLGIHTGDSIVVAPSQTLSNEDYYRLRDT 728

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  DP S K + +E+N +  ++  S     +   GY    +  
Sbjct: 729 ALKVIRHFGIVGECNIQYALDPNSEKYYIVEVNAR--LSRSS--ALASKATGYPLAYIAA 784

Query: 291 WM 292
            +
Sbjct: 785 KL 786


>gi|15678762|ref|NP_275879.1| hypothetical protein MTH736 [Methanothermobacter thermautotrophicus
           str. Delta H]
 gi|2621825|gb|AAB85240.1| conserved protein [Methanothermobacter thermautotrophicus str.
           Delta H]
          Length = 338

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/239 (18%), Positives = 85/239 (35%), Gaps = 17/239 (7%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVL--HGNFGEDGLVQAILELLE-IPYTHSGILAS 87
           + +    ++  + + L     D    ++   G   +   ++  LE    +P   SG  A+
Sbjct: 46  YHIVPRGMEGPLEIALRE-DVDAVVPLIGVDGPLRDVAWLKEKLEADYGVPVVASGPEAA 104

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
            +S DK ++K+  S   +               + +   P V+K  +G    G++V    
Sbjct: 105 EISTDKFKTKEFFSRNRIRTPEY----DLIDSPEDVTEMPVVLKQREGQGGSGVMVAATP 160

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
             +   L         D  L+E+Y+ G E++  V      D T   V      +      
Sbjct: 161 SDVREYLHAH------DHALMEEYIQGREISVEV--LRWNDETLPLVAVDKGDTRMDGLH 212

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
            L      PA I      E   +A    + +G  G +  D +      K++ +E+N +P
Sbjct: 213 PLRKVKRAPAIIRGFDGMEALAMASEVTELLGAEGNTDVDMIVSE-DGKLYAIEVNTRP 270


>gi|324499782|gb|ADY39916.1| CAD protein [Ascaris suum]
          Length = 914

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 86/303 (28%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                       V  V+  ++P     
Sbjct: 428 SGAQALKALKEKGIETVLVNPNVATVQTSKGFATKTCFVPIDKHYVTQVIKKMRPTGIIC 487

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----- 111
              G    +     +     +   +  +L + +        + +    +           
Sbjct: 488 TFGGQTALN-CAVELYNNGTLKQYNVDVLGTPIEAIMKTEDRGLFKEHIERLGERVAPSK 546

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +  ++    +  P +++       LG         +        ++++ +Q+ I+
Sbjct: 547 VACSLQEAVEVAESLGFPVLLRASYALGGLGSGFANDRNELIEIA--QKAFSYNNQVFID 604

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G                 + V   +       ++  +        +    Y+ ++ 
Sbjct: 605 RSLKGW-KEVEYEVVRDAYDNCVTVCNMENVDPVGIHTGESIVVAPSQTLNDFEYQTLRT 663

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A    ++ G  G     +   P   + + +E+N +  ++  S     +   GY    + 
Sbjct: 664 VAIKVARSFGIIGECNIQYAVCPDRFEYYIIEVNAR--LSRSS--ALASKATGYPLAYVA 719

Query: 290 LWM 292
             +
Sbjct: 720 TRL 722


>gi|324499764|gb|ADY39908.1| CAD protein [Ascaris suum]
          Length = 2230

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/303 (8%), Positives = 86/303 (28%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++ G +   ++ +                       V  V+  ++P     
Sbjct: 428 SGAQALKALKEKGIETVLVNPNVATVQTSKGFATKTCFVPIDKHYVTQVIKKMRPTGIIC 487

Query: 57  VLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI----- 111
              G    +     +     +   +  +L + +        + +    +           
Sbjct: 488 TFGGQTALN-CAVELYNNGTLKQYNVDVLGTPIEAIMKTEDRGLFKEHIERLGERVAPSK 546

Query: 112 --LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
                +  ++    +  P +++       LG         +        ++++ +Q+ I+
Sbjct: 547 VACSLQEAVEVAESLGFPVLLRASYALGGLGSGFANDRNELIEIA--QKAFSYNNQVFID 604

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
           + + G                 + V   +       ++  +        +    Y+ ++ 
Sbjct: 605 RSLKGW-KEVEYEVVRDAYDNCVTVCNMENVDPVGIHTGESIVVAPSQTLNDFEYQTLRT 663

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
           +A    ++ G  G     +   P   + + +E+N +  ++  S     +   GY    + 
Sbjct: 664 VAIKVARSFGIIGECNIQYAVCPDRFEYYIIEVNAR--LSRSS--ALASKATGYPLAYVA 719

Query: 290 LWM 292
             +
Sbjct: 720 TRL 722


>gi|325068728|ref|ZP_08127401.1| phosphoribosylglycinamide formyltransferase 2 [Actinomyces oris
           K20]
          Length = 428

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 83/288 (28%), Gaps = 33/288 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----R 40
           +A+L  G     E+    GK  A AL   G +V+ ID                VD     
Sbjct: 41  VALLGAG-----EI----GKEVAIALTRLGVEVTAIDRYEGAPAQQVAHNAMTVDMSDPE 91

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +      +    +     +          +++  T   +  +       R     
Sbjct: 92  ALTAAIRASGAAVVIPEIEALATDALAALESAGEVQVVPTARAVQLTMNREGIRRLAAEE 151

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                  +  P V+KP+   S  G  V++  Q +      +++ 
Sbjct: 152 LGLATSPYAFASSLDELRAGAQQVGFPCVVKPVMSSSGHGQSVVRGPQDLEAAWRYAAAD 211

Query: 161 NHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
              D  ++++E +V        +        T   V          +          P  
Sbjct: 212 GRVDRGRVIVEGFVRFDTEITLLTVRWRHPGTGETVTSFCEPIGHRQVDGDYVESWQPQP 271

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +     +  Q++A     A+G  G+   +        +V + E++ +P
Sbjct: 272 LSPVALERAQQVAERVTAALGGWGLFGVELFIC--GEEVLFSEVSPRP 317


>gi|302686030|ref|XP_003032695.1| hypothetical protein SCHCODRAFT_81979 [Schizophyllum commune H4-8]
 gi|300106389|gb|EFI97792.1| hypothetical protein SCHCODRAFT_81979 [Schizophyllum commune H4-8]
          Length = 2228

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 69/231 (29%), Gaps = 8/231 (3%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHG--NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           +  +   LA  K  + F    G         + + +              S ++  +M +
Sbjct: 135 NPRLPESLAASKNKIVFIGPPGSAMRSLGDKISSTIVAQHAQVPTMPWSGSGIADTEMSA 194

Query: 97  KQVVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
              V+          +      +     I  P +IK  +GG   GI  ++   +      
Sbjct: 195 GGFVTVPDKAYKDACVTNVEEGLQRAEQIGYPVMIKASEGGGGKGIRKVEHPDAFKNAFH 254

Query: 156 QSSSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHV 214
             +    G  + I +       L   ++ D   +   +            +         
Sbjct: 255 AVAGEIPGSPIFIMKLAGQARHLEVQLLADQYGNAISLFGRDCSVQ----RRHQKIIEEA 310

Query: 215 LPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                  + +++++R A    + +G       ++L+ P     ++LE+N +
Sbjct: 311 PVTIAKEETFEQMERAAVRLAKLVGYVSAGTVEYLYSPSEDYFYFLELNPR 361


>gi|150400853|ref|YP_001324619.1| hypothetical protein Maeo_0421 [Methanococcus aeolicus Nankai-3]
 gi|150013556|gb|ABR56007.1| protein of unknown function DUF201 [Methanococcus aeolicus
           Nankai-3]
          Length = 321

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/282 (13%), Positives = 84/282 (29%), Gaps = 51/282 (18%)

Query: 16  LSSGKAC------ASALEDAGFKVSQIDVDR------------------------SVGLV 45
           L +   C       + L   G +V  +D +                          +  +
Sbjct: 5   LRTATGCMASISFINELMKKGVEVVCVDANPISVGLHYCRKKYVVPKGNEPNFIPELLKI 64

Query: 46  LAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGV 105
                 D   +            + I     I    S      ++ DK ++ +   +  +
Sbjct: 65  CKKENIDAILSGPEEEIIHISKNKDIFLNEGILPIVSDYETIKITSDKWKTYEFFINNNI 124

Query: 106 PVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
               +          +  I+ P V+KP  G   LGI + K        + +         
Sbjct: 125 STPKTYK---LDEIKKEEINFPIVLKPRFGRGGLGIYIAKDMGDFNYIVKKC-----NSD 176

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + +++++GIE T  +  D   ++  +   K       +   S  + +    K   +I  
Sbjct: 177 YIAQEFIEGIEFTIDIFSDMDGNILSVVPRKRLSVESGISVKSEVTYNETIIKYAKEI-- 234

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPG 267
                     + +  +G +    +    + K +++EIN + G
Sbjct: 235 ---------AEKLNIKGPANIQCIL--KNNKSYFIEINPRFG 265


>gi|332141086|ref|YP_004426824.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas
           macleodii str. 'Deep ecotype']
 gi|327551108|gb|AEA97826.1| methylcrotonyl-CoA carboxylase, alpha subunit [Alteromonas
           macleodii str. 'Deep ecotype']
          Length = 666

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG   G+  +  ++     L  +   +          V+       
Sbjct: 148 ADDMGYPVLLKAAAGGGGKGMRQVWSEKDFSQALNAAKRESMASFGDDHMLVEKYLTRPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +       T             ++          P   +   + +++   A LA +AI 
Sbjct: 208 HVEIQVFCDTHGNGVYLFERDCSVQRRHQKIIEEAPAPNMSAHVREKMGEAAILAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YVGAGTVEFLLDE-DDSFYFMEMNTR 292


>gi|330954108|gb|EGH54368.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae Cit 7]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/148 (14%), Positives = 48/148 (32%), Gaps = 3/148 (2%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P ++K   GG   G+ V++++  +   +  +           E Y++     
Sbjct: 147 QIARDIGYPVIVKAAGGGGGRGMRVVQEESRLLDAIALTREEARHAFGNPELYIEKFLGQ 206

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQA 237
              +    L                ++          P   I   +   V      A + 
Sbjct: 207 PRHVEIQVLCDAYGNAVWLGSRDCSMQRRHQKVLEEAPAPGIDAALMARVGERCAQACRQ 266

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG +G+   +FLF     + +++E+N +
Sbjct: 267 IGYQGVGTFEFLF--EKDEFYFIEMNTR 292


>gi|326773400|ref|ZP_08232683.1| phosphoribosylglycinamide formyltransferase 2 [Actinomyces viscosus
           C505]
 gi|326636630|gb|EGE37533.1| phosphoribosylglycinamide formyltransferase 2 [Actinomyces viscosus
           C505]
          Length = 407

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/288 (13%), Positives = 83/288 (28%), Gaps = 33/288 (11%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID----------------VD----R 40
           +A+L  G     E+    GK  A AL   G +V+ ID                VD     
Sbjct: 20  VALLGAG-----EI----GKEVAIALTRLGVEVTAIDRYEGAPAQQVAHNAMTVDMSDPE 70

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
           ++   +      +    +     +          +++  T   +  +       R     
Sbjct: 71  ALTAAIRASGAAVVIPEIEALATDALAALESAGEVQVVPTARAVQLTMNREGIRRLAAEE 130

Query: 101 SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSW 160
                                  +  P V+KP+   S  G  V++  Q +      +++ 
Sbjct: 131 LGLATSPYAFASSLDELRAGAQQVGFPCVVKPVMSSSGHGQSVVRGPQDLEAAWRYAAAD 190

Query: 161 NHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
              D  ++++E +V        +        T   V          +          P  
Sbjct: 191 GRVDRGRVIVEGFVRFDTEITLLTVRWRHPGTGETVTSFCEPIGHRQVDGDYVESWQPQP 250

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           +     +  Q++A     A+G  G+   +        +V + E++ +P
Sbjct: 251 LSPVALERAQQVAERVTAALGGWGLFGVELFIC--GEEVLFSEVSPRP 296


>gi|254933955|gb|ACT87586.1| carbamoylphosphate synthetase [Pandemis limitata]
          Length = 975

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 435 TFGGQTALNCGVELQKSKVFEKYNVQVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 495 VFSVDDAVNAALQIGYPVMARAAFSLGGLGSGFANNEEELRN--LAHQAFSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 ALKVIRHFGIVGECNIQYALNPSSEQFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|326431414|gb|EGD76984.1| 3-methylcrotonyl CoA carboxylase [Salpingoeca sp. ATCC 50818]
          Length = 619

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 25/151 (16%), Positives = 54/151 (35%), Gaps = 9/151 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDG 174
               I  P +IK +KGG   G+ V+ +++    +L          ++    L+ +     
Sbjct: 104 QARDIGFPVLIKAVKGGGGKGMRVVMQEKDFMENLEMAKGESRKHFSDDRVLIEKYVQRP 163

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
             +   V  D   +   +            +             +  ++ KE+   A  A
Sbjct: 164 RHVEVQVFADKYGNAVYLFERDCSLQ----RRHQKIIEEAPAPGLSPELRKELGEAAVRA 219

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A+G  G    +F+ D  + + F++E+N +
Sbjct: 220 ALAVGYVGAGTVEFIMDTTTHEFFFMEMNTR 250


>gi|288959979|ref|YP_003450319.1| biotin carboxylase [Azospirillum sp. B510]
 gi|288912287|dbj|BAI73775.1| biotin carboxylase [Azospirillum sp. B510]
          Length = 459

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 28/179 (15%), Positives = 57/179 (31%), Gaps = 19/179 (10%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +IK   GG   GI + +    +     Q+ S           Y++ +      + 
Sbjct: 152 IGYPVMIKAAAGGGGRGIRIAETPDDLRRLAPQAQSEAQAAFRDGGLYLERVIENARHIE 211

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
              L     A+   +      +           A +     + +   A    +++G RG 
Sbjct: 212 VQILGDGSRAIHCFERECSLQRRRQKVWEEAPAACLDEATRQRLCASAVALTESVGYRGA 271

Query: 244 SRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
              ++L+D  S   F++E+N +              +       G    +L+  M+  A
Sbjct: 272 GTLEYLYDEPSGAFFFIEMNTR----------IQVEHPVTEMITGI---DLVAAMIRIA 317


>gi|254934077|gb|ACT87647.1| carbamoylphosphate synthetase [Scirpophaga incertulas]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMREEKIQTVLINPNIATVQTSKGLADKVYFLPITPDYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + V S    V    +
Sbjct: 436 TFGGQTALNCGVELQKTGVFEKYNVTVLGTPIQSIVDTEDRKIFAEKVHSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +   +L   + ++ +QL+I++
Sbjct: 496 VTSIDEALTAAIQIGYPVMARSAFSLGGLGSGFANNEDELR--VLAHQALSYSNQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRTT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGVVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|260772204|ref|ZP_05881120.1| ribosomal protein S6 glutaminyl transferase [Vibrio metschnikovii
           CIP 69.14]
 gi|260611343|gb|EEX36546.1| ribosomal protein S6 glutaminyl transferase [Vibrio metschnikovii
           CIP 69.14]
          Length = 301

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 50/315 (15%), Positives = 102/315 (32%), Gaps = 38/315 (12%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQID-------VDRSVGLVLAHLK--- 50
           + +L       R  SL S K    A +  G +V  ID       ++     +    +   
Sbjct: 3   IGILS------RNASLYSTKRLIEACKQRGHEVKVIDALRCYMNINSDQPEIHFKGEELG 56

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D     +  +    G        +   Y  +  +A + S DK+RS Q++S  G+ +  
Sbjct: 57  GFDAVIPRIGASVTFYGTAVLRQFEMMGVYPANESVAISRSRDKLRSMQLLSRKGIGMPI 116

Query: 110 SILVNRFTMDSQHLIS---PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
           +   ++       L      P VIK L+G   +G+++ +  ++    +           +
Sbjct: 117 TGFASKPDDVKDLLDMVGGAPVVIKLLEGTQGIGVVLAETRKAAESVIEAFMGLKANIMV 176

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
                  G        G             +       +    ++ H       + I   
Sbjct: 177 QEYIKEAG--------GADIRCFVIGDKVIAAMKRQGAEGEFRSNLHRGGTASLVKITPL 228

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
            ++ A  A + +G   ++  D L          +E+N  PG+  +       A  G    
Sbjct: 229 ERKTAIDAAKIMGLN-VAGVDLLRSERG--PLVMEVNSSPGLEGIE------AATGKDIA 279

Query: 287 ELLLWMVE-DASCLR 300
            L++  +E +A+  R
Sbjct: 280 SLIIEFIEKNAASRR 294


>gi|271498835|ref|YP_003331860.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech586]
 gi|270342390|gb|ACZ75155.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya dadantii
           Ech586]
          Length = 447

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSTKSYLNIPAIIAAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 ILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                     ++      I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   I  RG    +FLF   + + +++E+N +
Sbjct: 250 SDLRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|326773246|ref|ZP_08232529.1| conserved hypothetical protein [Actinomyces viscosus C505]
 gi|326636476|gb|EGE37379.1| conserved hypothetical protein [Actinomyces viscosus C505]
          Length = 415

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 13/165 (7%)

Query: 124 ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  P V K   G             I  I     +           +    L+++ + G 
Sbjct: 161 MEFPLVAKAAIGADYDRISFPGKRKIWFIDDAAELAGMWRSLKEAGYRSTFLVQECIPGD 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +     +        E+ +  S             +    P  +  + + ++        
Sbjct: 221 DTAMRSVTAYMDSTGELRLIGSARVL---LQDHAPTMIGNPVAMMTEAFPDLWEATGRLL 277

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +  G RG +  D   DP   +  + E+N + G    S +   A  
Sbjct: 278 RHAGYRGFANLDIKVDPRDGRELFFEVNPRIG--RNSFYLTAAGA 320


>gi|262041965|ref|ZP_06015147.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
 gi|259040663|gb|EEW41752.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae subsp. rhinoscleromatis ATCC 13884]
          Length = 395

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 27  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 87  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SRYRFADSEEGFR 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 146 AAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 204 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQTIARKVVLAL 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 262 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 292


>gi|238895425|ref|YP_002920160.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae NTUH-K2044]
 gi|238547742|dbj|BAH64093.1| 5'-phosphoribosylglycinamide transformylase [Klebsiella pneumoniae
           subsp. pneumoniae NTUH-K2044]
          Length = 392

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SRYRFADSEEGFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 AAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQTIARKVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|239998174|ref|ZP_04718098.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           35/02]
 gi|240015801|ref|ZP_04722341.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA6140]
 gi|240112145|ref|ZP_04726635.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           MS11]
 gi|240124922|ref|ZP_04737808.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           SK-92-679]
 gi|254492951|ref|ZP_05106122.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 1291]
 gi|268594026|ref|ZP_06128193.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 35/02]
 gi|268598203|ref|ZP_06132370.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae MS11]
 gi|268683501|ref|ZP_06150363.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-92-679]
 gi|226511991|gb|EEH61336.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 1291]
 gi|268547415|gb|EEZ42833.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae 35/02]
 gi|268582334|gb|EEZ47010.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae MS11]
 gi|268623785|gb|EEZ56185.1| acetyl-CoA carboxylase [Neisseria gonorrhoeae SK-92-679]
 gi|317163464|gb|ADV07005.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 49/146 (33%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V++K + +   +  + +           Y++       
Sbjct: 149 ADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFGNPMVYMERYLQRPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L                L+          PA    +  ++    A   A + IG
Sbjct: 209 HVEIQVLADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFIDEEARKKIGKACTDACKRIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+     + F++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|237809270|ref|YP_002893710.1| acetyl-CoA carboxylase, biotin carboxylase [Tolumonas auensis DSM
           9187]
 gi|237501531|gb|ACQ94124.1| acetyl-CoA carboxylase, biotin carboxylase [Tolumonas auensis DSM
           9187]
          Length = 446

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 84/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV-LAHLKP--------DLAFN----------- 56
                 A ++ G K   +    DR +  V LA            D   N           
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVKLADETICIGKPSAKDSYLNVPSIIAAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVEKSGFIFVGPKAETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSW 160
                    +        I  P +IK   GG   G+ V++ ++ +   +          +
Sbjct: 134 SGGPIGEDAKQNAAIAKRIGYPVIIKAAGGGGGRGMRVVRNEEELQNSVALTKSEAGQFF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 GNDMVYMEKYLENPRHIEIQVLADGQGNAIYLGERDCSMQ----RRHQKVLEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   I  RG    +FL+   + + +++E+N +
Sbjct: 250 EDMRRYIGERCVRACIEINYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|162457021|ref|YP_001619388.1| biotin carboxylase related protein [Sorangium cellulosum 'So ce
           56']
 gi|161167603|emb|CAN98908.1| Biotin carboxylase related protein [Sorangium cellulosum 'So ce
           56']
          Length = 742

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 42/150 (28%), Gaps = 5/150 (3%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +    + P  +K   GG   G  VI   + +P  + +                +     
Sbjct: 379 HAAGRFTFPGRLKAANGGGGRGQAVIPTVEQVPQAIQKVLGEIKAYNWQPGVMFEQNIPE 438

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA---KIPLDIYKEVQRLAFLAH 235
              +    L                 + +S       P    +    + + +  LA    
Sbjct: 439 TIHLEVQVLRDRYGNARHFGMRDCSEQRASQKIQEEAPPALLRRYPGLEERICGLAVQIA 498

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +G  G    + +F     K ++LE+N +
Sbjct: 499 DRVGYVGAGTVELMF--KEGKFYFLEMNTR 526


>gi|158289026|ref|XP_310823.4| AGAP000300-PA [Anopheles gambiae str. PEST]
 gi|157018856|gb|EAA06526.4| AGAP000300-PA [Anopheles gambiae str. PEST]
          Length = 2233

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 424 SGSQAIKALKEERIQTVLINPNIATVQTSKGLADKVYFLPITSHYVEQVIKAERPGGVLL 483

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +     +    + I +   + D+     +       V    +
Sbjct: 484 TFGGQTALNCGVEMERAGLFARYGVRIMGTPIRSIIETEDRKLFAERVGEIGEQVAPSAA 543

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   I  P + +       LG         +    L S +  H +QL+I++
Sbjct: 544 VYSIQEALEAAERIGYPVMARAAFSLGGLGSGFASSADELRA--LASQALAHSNQLIIDK 601

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 602 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRST 660

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 661 AIRVIRHFGVVGECNIQYALNPESEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 716

Query: 291 WM 292
            +
Sbjct: 717 KL 718


>gi|126274951|ref|XP_001386775.1| acetyl-coenzyme-A carboxylase [Scheffersomyces stipitis CBS 6054]
 gi|126212644|gb|EAZ62752.1| acetyl-coenzyme-A carboxylase [Pichia stipitis CBS 6054]
          Length = 2224

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  +  + +      Q+++   G  + I +   D   L  
Sbjct: 233 AREIGFPVMIKASEGGGGKGIRKVDNEDNFLALYSQAANEIPGSPIFIMKLAGDARHLEV 292

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                D + +++  A    + +G
Sbjct: 293 QLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIANKDTFHQMENAAVRLGKLVG 348

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 349 YVSAGTVEYLYSHAEDKFYFLELNPR 374


>gi|111023059|ref|YP_706031.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           jostii RHA1]
 gi|110822589|gb|ABG97873.1| acetyl-CoA carboxylase biotin carboxylase subunit [Rhodococcus
           jostii RHA1]
          Length = 672

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 19/147 (12%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++KP  GG   G+ ++++  ++   L  +             +++   L   
Sbjct: 153 AGDIGYPVLVKPSAGGGGKGMRLVEEPGALAEALRSARREAASAFGDDTLFLERFVLRPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         L+          P+ +  +     +   A    +++ 
Sbjct: 213 HIEVQILADGHGNVVHLGERECSLQRRHQKVIEEAPSPLLDEATRARIGEAACNTARSVD 272

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+       + F++E+N +
Sbjct: 273 YSGAGTVEFIVSADKPDEFFFMEMNTR 299


>gi|325088463|gb|EGC41773.1| acetyl-CoA carboxylase [Ajellomyces capsulatus H88]
          Length = 2230

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 156 PHIYDKGCTHSPQEGLEKARAIGFPVMVKASEGGGGKGIRKVEREEDFVNMYNAAASEIP 215

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + I +   +   L   ++ D   +   +            +                
Sbjct: 216 GSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKP 271

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 272 ETFQAMERAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 315


>gi|240282329|gb|EER45832.1| acetyl-CoA carboxylase [Ajellomyces capsulatus H143]
          Length = 2292

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 218 PHIYDKGCTHSPQEGLEKARAIGFPVMVKASEGGGGKGIRKVEREEDFVNMYNAAASEIP 277

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + I +   +   L   ++ D   +   +            +                
Sbjct: 278 GSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKP 333

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 334 ETFQAMERAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 377


>gi|225559392|gb|EEH07675.1| acetyl-CoA carboxylase [Ajellomyces capsulatus G186AR]
          Length = 2292

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 218 PHIYDKGCTHSPQEGLEKARAIGFPVMVKASEGGGGKGIRKVEREEDFVNMYNAAASEIP 277

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + I +   +   L   ++ D   +   +            +                
Sbjct: 278 GSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKP 333

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 334 ETFQAMERAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 377


>gi|188532835|ref|YP_001906632.1| Urea amidolyase [Erwinia tasmaniensis Et1/99]
 gi|188027877|emb|CAO95734.1| Urea amidolyase [Erwinia tasmaniensis Et1/99]
          Length = 1205

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 44/150 (29%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+     + ++              ++H    L        
Sbjct: 147 AAKIGYPVMLKSTAGGGGIGLTRCADEAALSAAWESVRRLGEQFFSHAGVFLERCIDRAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD    V  +            K         LP      +       A    
Sbjct: 207 HVEVQIFGDGKGKVVALGERDCSLQRRNQKVVEETPAPNLPTATRRALLA----SAVRLG 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + +  R     ++++D    + F+LE+N +
Sbjct: 263 ERVNYRSAGTVEYIYDAAHDEFFFLEVNTR 292


>gi|118594162|ref|ZP_01551509.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
 gi|118439940|gb|EAV46567.1| acetyl-CoA carboxylase [Methylophilales bacterium HTCC2181]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 82/285 (28%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------------- 56
                 A  + G K   +            L  +                          
Sbjct: 14  ALRILRACREMGIKTVAVYSQADADAKYVKLSDEAVCIGPAASNLSYLNVPAIISAAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +K  +   GVP  P 
Sbjct: 74  DAQAIHPGYGFLSENADFAERVEKSGFTFIGPRADTIRLMGDKVSAKVAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                        +    I  P ++K   GG   G+ V+  + +I   +  + +     +
Sbjct: 134 SDGALSDDPSQIREIARKIGYPVIVKAAGGGGGRGMRVVHTEAAIINSVAMTKAEAGAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +       +   V+ D   +   +            K         +P +  
Sbjct: 194 GNPTVYMEKYLETPRHVEVQVLSDQHGNAIHLWDRDCSLQRRNQKVVEEAPAPGIPQR-- 251

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + +++ +    A + IG RG    +FL+   + + F++E+N +
Sbjct: 252 --LREKMGQRCADACKKIGYRGAGTFEFLY--ENEEFFFIEMNTR 292


>gi|121608461|ref|YP_996268.1| acetyl-CoA carboxylase, biotin carboxylase [Verminephrobacter
           eiseniae EF01-2]
 gi|121553101|gb|ABM57250.1| acetyl-CoA carboxylase, biotin carboxylase [Verminephrobacter
           eiseniae EF01-2]
          Length = 449

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 3/141 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+  + ++   +  + +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHTEAALVNAVQMTKAEAGAAFGNPAVYMEKFLQNPRHIEIQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
            L                ++          PA  I   + +++      A + IG RG  
Sbjct: 214 VLADKHRNAVYLGERDCSMQRRHQKVIEEAPAPGIARKLIEKIGERCVAACKKIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL+   + + +++E+N +
Sbjct: 274 TFEFLY--ENEEFYFIEMNTR 292


>gi|325141597|gb|EGC64062.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           961-5945]
 gi|325197640|gb|ADY93096.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria meningitidis
           G2136]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/220 (15%), Positives = 68/220 (30%), Gaps = 9/220 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+      +E     +         L  DK+ +K  +   GVP  P  
Sbjct: 76  DAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIEAGVPCVPGS 134

Query: 112 L-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                      +     +  P +IK   GG   G+ V++K + +   +  + +       
Sbjct: 135 DGALPDDGEEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFG 194

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    +                L+          PA    +  + 
Sbjct: 195 NPMVYMERYLQRPRHVEIQVIADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFITEKERA 254

Query: 227 VQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A   A + IG RG    +FL+     + F++E+N +
Sbjct: 255 KIGNACADACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|237654103|ref|YP_002890417.1| acetyl-CoA carboxylase biotin carboxylase subunit [Thauera sp.
           MZ1T]
 gi|237625350|gb|ACR02040.1| acetyl-CoA carboxylase, biotin carboxylase [Thauera sp. MZ1T]
          Length = 452

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 149 ARAVGYPVIIKAAGGGGGRGMRVVHTEAALLNAVTTTRAEAQAAFGNPVVYMEKFLENPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          PA  I      +V      A + IG
Sbjct: 209 HVEIQILADQHGNAVYLGERDCSMQRRHQKVIEEAPAPGIDRKTIAKVGERCAEACRKIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|222086555|ref|YP_002545089.1| carbamoyl-phosphate synthase large chain (ammonia chain) protein
           [Agrobacterium radiobacter K84]
 gi|221724003|gb|ACM27159.1| carbamoyl-phosphate synthase large chain (ammonia chain) protein
           [Agrobacterium radiobacter K84]
          Length = 1161

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 85/335 (25%), Gaps = 66/335 (19%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+           A AL+DAG++   I         D D S 
Sbjct: 622 VVILGGGPN-------RIGQGIEFDYCCCHAAFALKDAGYEAIMINCNPETVSTDYDTSD 674

Query: 43  GLVLAHLKPDLAFNVL----------------HGNFGEDGLVQAILELLEIPYTHSGILA 86
            L    L  +    +L                 G              + I  T    + 
Sbjct: 675 RLYFEPLTAEDVIEILRAEQENGELVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDAID 734

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            A   D+ +   +      P                 I  P V++P        + +I  
Sbjct: 735 LAEDRDRFQKLLMKLDLNQPNNGIAYSVEQARLVASEIGFPLVVRPSYVLGGRAMQIIHS 794

Query: 147 DQSIPLDL---------LQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKS 197
           +  +   L                  D+      + G          A+    ++     
Sbjct: 795 EGMLQTYLLDTVPELVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLANAIEVDVDCLSD 854

Query: 198 DFYSYELKYSSLNS----------THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSD 247
               Y                     + P  +   +  E++R A    +A+   G+    
Sbjct: 855 GTDVYVAGIMEHIEEAGIHSGDSACSLPPRTLSPAMIDELERQAKAMAKALNVGGLMNVQ 914

Query: 248 FLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAG 282
           F        V+ LE+N +   T     P +A   G
Sbjct: 915 FAI--KDGTVYVLEVNPRASRT----VPFVAKTIG 943



 Score = 39.5 bits (90), Expect = 0.56,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
          SG     AL + G++V  ++ +                       V  ++A  +PD    
Sbjct: 29 SGTQACKALREEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLP 88

Query: 57 VLHGN 61
           + G 
Sbjct: 89 TMGGQ 93



 Score = 37.5 bits (85), Expect = 2.3,   Method: Composition-based stats.
 Identities = 19/167 (11%), Positives = 48/167 (28%), Gaps = 4/167 (2%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +I+P       G  +          +      +   ++L+E+ V G +     +   
Sbjct: 217 LPAIIRPSFTLGGTGGGIAYNRSEFFEIVGGGLDASPTTEVLVEESVLGWKEFEMEVVRD 276

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
             D   I     +     +      +          +          +  +     G S 
Sbjct: 277 KADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQIMRNASIAVLREIGVETGGSN 336

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             F  +P   ++  +E+N  P ++  S     +   G+   ++   +
Sbjct: 337 VQFAVNPKDGRLVVIEMN--PRVSRSS--ALASKATGFPIAKVAAKL 379


>gi|218513286|ref|ZP_03510126.1| propionyl-CoA carboxylase protein, alpha subunit [Rhizobium etli
           8C-3]
          Length = 369

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/181 (12%), Positives = 56/181 (30%), Gaps = 21/181 (11%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +IK   GG   G+ +      +     ++ S           +++   +    + 
Sbjct: 15  IGYPVMIKASAGGGGKGMRIAWSQAEVRDGFERARSEAKSSFGDDRVFIEKFVVEPRHIE 74

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIGCRG 242
              L  +   V         ++  +       P+    +  ++     +    +A+  + 
Sbjct: 75  IQVLADSHGNVVYLGERECSIQRRNQKVAEEAPSPFLDENTRKAMGEQSVALARAVEYQS 134

Query: 243 ISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDA 296
               +F+ D   R  ++LE+N +              +       G    +L+  M+  A
Sbjct: 135 AGTVEFIVD-RDRNFYFLEMNTR----------LQVEHPVTELVTGI---DLVEQMIRVA 180

Query: 297 S 297
           +
Sbjct: 181 A 181


>gi|158451337|gb|ABW39029.1| putative CAD trifunctional protein [Titaea tamerlan]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALVAAVNIGYPVMARSAFSLGGLGSGFANNEDELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|160936933|ref|ZP_02084297.1| hypothetical protein CLOBOL_01822 [Clostridium bolteae ATCC
           BAA-613]
 gi|158440123|gb|EDP17870.1| hypothetical protein CLOBOL_01822 [Clostridium bolteae ATCC
           BAA-613]
          Length = 452

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 13/219 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     +     I +            +K  +++ +   GVPV P    
Sbjct: 79  AIHPGFGFLSENARFAKLCAECNIAFIGPSAEIINKMGNKSEARKTMMEAGVPVVPGSKE 138

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGDQL 166
            +      +     I  P +IK   GG   G+ +    +    +       S     D  
Sbjct: 139 PVHAAEDGLAMAKEIGFPVMIKASSGGGGKGMRISRSPEDFTELFNAAQMESVKGFSDDT 198

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           +  +              A        V   +      +             I   + K 
Sbjct: 199 MYIEKYIEKPRHVEFQIMADKHG--NVVHLGERDCSIQRRHQKVLEEAPCDVISPGLRKA 256

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   A  A +A+G       +FL D      +++E+N +
Sbjct: 257 MGDTAVKATKAVGYENAGTIEFLLDKDKN-FYFMEMNTR 294


>gi|319651495|ref|ZP_08005623.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317396810|gb|EFV77520.1| acetyl-CoA carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + +Q +   +  +             Y++       
Sbjct: 148 AEKIEYPVIIKATAGGGGKGIRVARTEQELIKGITITQQEALTAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+     +  +E+   A  A +A+ 
Sbjct: 208 HVEIQVLADNYGNTVHLGERDCSIQRRLQKLLEETPSPALDGETREEMGNAAVKAAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D  +RK +++E+N +
Sbjct: 268 YTGAGTIEFIYDYQNRKFYFMEMNTR 293


>gi|311697070|gb|ADP99943.1| methylcrotonyl-CoA carboxylase, alpha subunit [marine bacterium
           HP15]
          Length = 664

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 44/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P ++K + GG   G+ V+         L  +           +  ++       
Sbjct: 148 AEKCGFPLLLKAVAGGGGKGMRVVNNMGEFDDALAAAKREAQNAFGNPDMLIERYLTQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +        E            ++          PA    +  ++     A  A QAI 
Sbjct: 208 HVEIQVFCDQEGKGVYLAERDCSVQRRHQKVLEEAPAPGLSEETRKAMGEAAVRAAQAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL+D +    F++E+N +
Sbjct: 268 YVGAGTVEFLYD-VDGSFFFMEMNTR 292


>gi|302851507|ref|XP_002957277.1| hypothetical protein VOLCADRAFT_77540 [Volvox carteri f.
           nagariensis]
 gi|300257372|gb|EFJ41621.1| hypothetical protein VOLCADRAFT_77540 [Volvox carteri f.
           nagariensis]
          Length = 517

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 83/258 (32%), Gaps = 29/258 (11%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E      I     I +     +   L  DK  ++  +   GVP  P    
Sbjct: 119 AIHPGYGFLSERAEFVEICNDHGIEFIGPKPVQIRLMGDKSTARDTMKKAGVPTVPGSEG 178

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I  +   +++   I  P +IK   GG   G+ +  K++ +     Q+            
Sbjct: 179 LIRDDADALENAQRIGYPIMIKATAGGGGRGMRLCTKEEDLLPLYKQAQQEAEAAFGNGA 238

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++  +       P+     ++ K + 
Sbjct: 239 VYMERFVQNPRHIEFQVLADKYGNVVHLGERDCSVQRRNQKLIEEAPSPALTPEVRKAMG 298

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AG 282
             A  A +AIG  G+   +FL++      +++E+N +              +       G
Sbjct: 299 DAAVAAAKAIGYVGVGTIEFLWEQKG--FYFMEMNTR----------IQVEHPVTEMITG 346

Query: 283 YSFRELLLWMVEDASCLR 300
               +L+   ++ A   R
Sbjct: 347 I---DLIQEQIKVAMGER 361


>gi|288926330|ref|ZP_06420254.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           D17]
 gi|288336935|gb|EFC75297.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella buccae
           D17]
          Length = 387

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/275 (14%), Positives = 81/275 (29%), Gaps = 32/275 (11%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    A +  G  V   D                       ++  V+   +PD+    +
Sbjct: 7   GKELVIAAKRKGLYVVACDRYDNAPAMQVADEREVFSMLDGDALEAVVRKHRPDIIVPEI 66

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                E         +  +P   +          +  + + +                  
Sbjct: 67  EAIRTERLFDFEKAGIQVVPSARAVNYTMNRRAIRDLAAKELRLRT-AKYFYAKTFDEFR 125

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD--QLLIEQYVDGIE 176
            +   I  P V+KPL   S  G   +  D  +      +   + GD  +++IE+++D   
Sbjct: 126 KAADEIGFPCVVKPLMSSSGHGQSYVHGDGELEQAFRDAMEGSRGDVKEIIIEEFIDFDS 185

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ 236
               +        T    P         +          P ++P +  K  + +A    +
Sbjct: 186 EFTLLTVTQKQGPTLFCPPIGHI-----QKGGDYRESWQPFRLPDEALKAAEDMARKVTE 240

Query: 237 AIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           A+   G+   +F       +V + E++ +P   GM
Sbjct: 241 ALTGCGLWGVEFFLSRQ-GEVIFSELSPRPHDTGM 274


>gi|224369783|ref|YP_002603947.1| RimK1 [Desulfobacterium autotrophicum HRM2]
 gi|223692500|gb|ACN15783.1| RimK1 [Desulfobacterium autotrophicum HRM2]
          Length = 320

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 32/275 (11%), Positives = 72/275 (26%), Gaps = 34/275 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
           G      L   GFK +  D       ++   + D  +      +           + +  
Sbjct: 75  GSQVVKTL---GFKPNFCDYTHGEMDLIR--RADTIY------WPTAFYAGLFSAMNKKI 123

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
           +        AL   K  +   +     P                L   P++ K  +G S 
Sbjct: 124 FPSVNNYDFALDKIKQTAMFKLLDLPHPRTKLFYGKTQKQRITDLFKFPFIAKIPRGSSR 183

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
              + + K Q+  +  L+     +  + +  Q                  +         
Sbjct: 184 GKGVFLIKGQNDLITYLKIPGPAYIQEYIPTQ-------------RDMRILIIGREIVLA 230

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
           F+          +          ++  +   LA    +      +   D +      K  
Sbjct: 231 FWRTAADNEFRTNLSQGGKISFSNLPSQALELALQTARCCNWNDVG-IDIM--EHQGKPM 287

Query: 259 WLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
            +E N++ G        +    AG  +++LL  ++
Sbjct: 288 VIEANMKYG-------TQGFKAAGIDYQKLLERLI 315


>gi|71083429|ref|YP_266148.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1062]
 gi|71062542|gb|AAZ21545.1| biotin carboxylase [Candidatus Pelagibacter ubique HTCC1062]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 12/150 (8%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++K++                + + +  + + + +  
Sbjct: 148 CKKIGFPVLIKASAGGGGKGMKIVRKEEEFETLFSTAKSEAQKYFGNDEIYIEKFFQNPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+   +  V       S       +             +   I K++        
Sbjct: 208 HIEVQVLSGKNRTVHLHERDCSVQ-----RRHQKLIEETPSPVLTDQIRKDLFERTVNMV 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG  G    +F++     K ++LE+N +
Sbjct: 263 SKIGYEGAGTVEFIY--EDGKFYFLEMNTR 290


>gi|329297131|ref|ZP_08254467.1| urea carboxylase [Plautia stali symbiont]
          Length = 1205

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 17/146 (11%), Positives = 42/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+       ++                    +++       
Sbjct: 147 AEDIGYPVMLKSTAGGGGIGLTRCADATALQNAWESVRRLGEQFFSDAGVFIERCIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA   P    + +   A    + + 
Sbjct: 207 HVEVQIFGDGKGKVIALGERDCSLQRRNQKVVEETPAPNLPQATREALLASAVRLGERVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     ++++D      ++LE+N +
Sbjct: 267 YRSAGTVEYIYDAAQDAFYFLEVNTR 292


>gi|297180540|gb|ADI16752.1| biotin carboxylase [uncultured gamma proteobacterium HF0010_11B23]
          Length = 447

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/285 (12%), Positives = 82/285 (28%), Gaps = 45/285 (15%)

Query: 19  GKACASALEDAGFKV--------------------SQIDVDRSVGLVLAHLKP------- 51
                 A ++ G++V                      I    S    L            
Sbjct: 16  AIRALRAAKELGYQVASVYSTVDKDQKHLKLSDEAICIGPAASKESYLNEAAIISAAELV 75

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D  +    G   E+       +     +         +  DK+++K+++ S GVP  P
Sbjct: 76  GADAIYPGF-GFLAENASFAEKCKESGFEFIGPDPKVINVMGDKIKAKELIESLGVPTVP 134

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                  + +    I      P ++K   GG   G+ V+     +   ++ + +     +
Sbjct: 135 GYTGQIQSQNQIENIVEEVGYPVIVKASSGGGGKGMRVVYDKSELWDSIIGAQNEAKLAF 194

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            + +  + +       +   + GD    V  +            K         L  +  
Sbjct: 195 GNDEVFIEKYLKKPRHIEIQIFGDGKGKVVHLYSRDCSLQRKYQKIVEEAPAKNLNQEKL 254

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I     +        +  +G    +FL+     + F++E+N +
Sbjct: 255 DEIQNICVKACSE----LNYKGAGTLEFLY--EDNEFFFIEMNTR 293


>gi|77459881|ref|YP_349388.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           fluorescens Pf0-1]
 gi|77383884|gb|ABA75397.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens Pf0-1]
          Length = 649

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   L   
Sbjct: 152 CERIGYPVLLKATAGGGGKGMKVVEDVSQLGEALASAQREAQSSFGDSRMLVEKYLLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  + QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRSAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|85706530|ref|ZP_01037623.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
 gi|85668942|gb|EAQ23810.1| acetyl/propionyl CoA carboxylase alpha subunit [Roseovarius sp.
           217]
          Length = 672

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 27/140 (19%), Positives = 55/140 (39%), Gaps = 1/140 (0%)

Query: 127 PYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDAS 186
           P+++K   GG   G+ ++      P  +  + +   G       +++        +    
Sbjct: 159 PFLVKASAGGGGRGMRLVTDMADAPEAIASARAEAQGAFGDPAVFLERYAPRARHVEVQV 218

Query: 187 LDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISR 245
           L  T   V         L+ +        PA   P D+ ++++  A    QAIG R    
Sbjct: 219 LGDTNGTVLHLGDRDCSLQRNHQKLIEEAPAPDLPDDLREDMRAAAVRLAQAIGYRSAGT 278

Query: 246 SDFLFDPLSRKVFWLEINVQ 265
            ++L+DP   + ++LE+N +
Sbjct: 279 VEYLYDPEHAEYYFLEMNTR 298


>gi|328957605|ref|YP_004374991.1| biotin carboxylase [Carnobacterium sp. 17-4]
 gi|328673929|gb|AEB29975.1| biotin carboxylase [Carnobacterium sp. 17-4]
          Length = 455

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 36/281 (12%), Positives = 87/281 (30%), Gaps = 42/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G K   +    DR  + + LA            D   N              
Sbjct: 17  IIRACREMGIKTVAVYSEADRDALHMQLADEAICIGPAKATDSYLNMQSILSAAVVTNAQ 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + + + + +     +      +K  ++ ++    VPV P    
Sbjct: 77  AIHPGFGFLSENSTFATMCKEMNVTFIGPDAVTIDQMGNKANARALMIEANVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            I            +  P ++K   GG   G+  + + + +      + +     +    
Sbjct: 137 FITDTNEAKQLADQLGYPVMVKAAAGGGGKGMRKVLRTEDLTAAFNSAKNEAKAAFGDDQ 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD   +V  +            K    + +  +      +  
Sbjct: 197 MYMEKIIEHARHIEVQLLGDHYGNVIHLGERDCSLQRNNQKVIEESPSVAI----NEEQR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K +   A  A + +G +     +FL D  + + +++E+N +
Sbjct: 253 KNLGETAIRAAKYVGYKNAGTIEFLLD-QNGEFYFMEMNTR 292


>gi|260944242|ref|XP_002616419.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
 gi|238850068|gb|EEQ39532.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
          Length = 2296

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
             +I  P +IK  +GG   GI  +  ++       Q+++   G  + I +   D   L  
Sbjct: 308 ARIIGFPVMIKASEGGGGKGIRKVDDEKDFISLYKQAANEIPGSPIFIMKLAGDARHLEV 367

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +                D +  ++  A    + +G
Sbjct: 368 QLLADQYGTNISLFGRDCSVQ----RRHQKIIEEAPVTIANKDTFHAMENAAVRLGKLVG 423

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 424 YVSAGTVEYLYSHAEDKFYFLELNPR 449


>gi|209551996|ref|YP_002283912.1| carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
 gi|209539589|gb|ACI59520.1| Carbamoyl-phosphate synthase L chain ATP-binding [Rhizobium
           leguminosarum bv. trifolii WSM2304]
          Length = 667

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 44/277 (15%), Positives = 85/277 (30%), Gaps = 29/277 (10%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           I +D+ +   +     D      +G   E+      LE   I +    + A     DK+ 
Sbjct: 61  IVIDK-ILDAIHRTGADAVHPG-YGFLSENSAFAEALEKAGIAFIGPPVRAIQAMGDKIT 118

Query: 96  SKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIP 151
           SK++ +  GV   P  +      +    IS     P +IK   GG   G+ +   D    
Sbjct: 119 SKKIAAEAGVSTVPGHMGLIEDAEEAVRISASIGYPVMIKASAGGGGKGMRIAWNDAEAR 178

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                S +           +++        +    L                ++  +   
Sbjct: 179 EGFQSSRNEAKNAFGDDRIFIEKFVDQPRHIEIQVLGDQHGTALYLGERECSIQRRNQKV 238

Query: 212 THVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----Q 265
               P+     +  + +   A    +A+G       +F+ D      ++LE+N       
Sbjct: 239 IEEAPSPFLDAETRRAMGEQAVALAKAVGYFSAGTVEFIVDGARN-FYFLEMNTRLQVEH 297

Query: 266 PGMTP--VSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
           P +T    SI             +L+  M+  AS  +
Sbjct: 298 P-VTELVTSI-------------DLVEQMIRVASGEK 320


>gi|188587471|ref|YP_001919016.1| ATP-grasp protein-like protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179352158|gb|ACB86428.1| ATP-grasp protein-like protein [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 399

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 56/182 (30%), Gaps = 12/182 (6%)

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIK--- 145
           ++  K+          +P    +       + ++ +  P ++KP      +     K   
Sbjct: 117 VNKHKLYKLAQKHGMPIPKTFFVQGIEDLENIKNEMVYPCIVKPELSHEFVKKFRKKVFE 176

Query: 146 --KDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
               + +   +  ++  +    ++I++ + G +              E     ++    +
Sbjct: 177 VSNYRQLYEAVSSATDADLD--VMIQEIIPGPDDHVYTYDAYFNRNAEPVKVFTNRKQRQ 234

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  S        P  I      L     + IG  GI   +   DP + K + +EIN
Sbjct: 235 FPIHFGASVFTESVFEPRIIQ-----LGEDFLKKIGYHGIVEIELKKDPRNGKFYMIEIN 289

Query: 264 VQ 265
            +
Sbjct: 290 PR 291


>gi|182419317|ref|ZP_02950570.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237667910|ref|ZP_04527894.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
 gi|182376957|gb|EDT74528.1| acetyl-CoA carboxylase, biotin carboxylase [Clostridium butyricum
           5521]
 gi|237656258|gb|EEP53814.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium
           butyricum E4 str. BoNT E BL5262]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 29/212 (13%), Positives = 63/212 (29%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+       E   I +            DK  +K+ +    VP+ P     I   
Sbjct: 82  YGFLSENTSFARFCEEFNICFIGPHYTVIEKLGDKSNAKETMKEASVPIVPGSAGEIKSV 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
             ++     I  P ++K   GG   G+ V      +   + +              Y++ 
Sbjct: 142 NESVKVAEKIGYPVIVKASAGGGGKGMRVAGNKDELITAIRECEKEADSYFGNSAVYLEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFL 233
                  +    +      V         ++          P+    + + K +   A  
Sbjct: 202 YLNHTRHVEIQIIGDNYGNVVYLGERDCTIQRRHQKLVEESPSPALDENLRKRMGEAAVN 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +A     +   +FL +      +++E+N +
Sbjct: 262 ASKAFKYNSVGTVEFLLNE-DNNFYFMEMNTR 292


>gi|158319349|ref|YP_001511856.1| ATP-grasp protein-like protein [Alkaliphilus oremlandii OhILAs]
 gi|158139548|gb|ABW17860.1| ATP-grasp protein-like protein [Alkaliphilus oremlandii OhILAs]
          Length = 390

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 31/218 (14%), Positives = 68/218 (31%), Gaps = 16/218 (7%)

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
                H ++ E                 +       +M+K   +++    GV V  +I V
Sbjct: 79  VLIPCHDSYVEVIDEYLDELREFYLIPQTEQGLYTKAMNKETLERMAKEQGVLVPETIRV 138

Query: 114 NRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
           N      +   +I  P ++KP    S +     K        + +  +    +  L +  
Sbjct: 139 NEDNFFEKVDSIIKYPCIVKPTDSPSFVAKFRKK--------IFKVHNRAELEDALEKAQ 190

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR-- 229
             G+E+    +     D         +  +    +++       P      +Y   +   
Sbjct: 191 NAGLEVIVQRIIPGFDDHMYTFDAYLNQDAKVTHWTTCQKFRQYPINFGASVYTGQRHVP 250

Query: 230 ----LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
               +     +AIG +G    +F  D  + + + +EIN
Sbjct: 251 ELYEIGAPFLEAIGYKGFGEIEFKKDAETGEYYLIEIN 288


>gi|301755962|ref|XP_002913816.1| PREDICTED: LOW QUALITY PROTEIN: CAD protein-like [Ailuropoda
           melanoleuca]
          Length = 2221

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/310 (12%), Positives = 86/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGILL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+    S+       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFASRMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELFALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|255292639|dbj|BAH89748.1| acetyl-CoA carboxylase [uncultured bacterium]
          Length = 235

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG R     +F+ D    + F+LE+N +
Sbjct: 44  RHIGYRSAGTVEFIVDVERNEFFFLEMNTR 73


>gi|255292095|dbj|BAH90574.1| acetyl-CoA carboxylase [uncultured bacterium]
 gi|255292180|dbj|BAH89305.1| acetyl-CoA carboxylase [uncultured bacterium]
          Length = 455

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 9/30 (30%), Positives = 16/30 (53%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + IG R     +F+ D    + F+LE+N +
Sbjct: 264 RHIGYRSAGTVEFIVDVERNEFFFLEMNTR 293


>gi|187234619|gb|ACD01548.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Xanthopan morgani]
          Length = 976

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALAAAIQIGYPVMARSAFSLGGMGSGFANNEDELRA--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|156974400|ref|YP_001445307.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio harveyi ATCC
           BAA-1116]
 gi|171769813|sp|A7MVH5|PURT_VIBHB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|156525994|gb|ABU71080.1| hypothetical protein VIBHAR_02115 [Vibrio harveyi ATCC BAA-1116]
          Length = 391

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 81/283 (28%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                +D    +++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYANAPAMQVAHRSYVIDMLDGQALEEIINKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + ++                 
Sbjct: 82  EAIATDKLVELEEQGLNVVPTAKATKLTMNREGIRRLAAEELALNT-SPYQFADSFEDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK ++ +        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKTEEDVQTA--WEYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENAIKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|119502734|ref|ZP_01624819.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2080]
 gi|119461080|gb|EAW42170.1| acetyl-CoA carboxylase [marine gamma proteobacterium HTCC2080]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 42/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLV---------------LAHLKPDLAFN----- 56
                 A  + G +   +    DR +  V               L++L      +     
Sbjct: 14  ALRILRACRELGIETVAVHSTADRELKHVRLADQAVCIGPPNSTLSYLNVPAIISVAEVT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +K  +   GVP  P 
Sbjct: 74  NTDAIHPGYGFLSENADFAEQVEKSGFVFIGPTAETIRLMGDKVSAKHQMQRSGVPTVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       +     I  P ++K   GG   G+ V+  ++ +   +  + S      
Sbjct: 134 SEGAVPEDPDEVLRIARDIGYPVIVKAAAGGGGRGMRVVHNEEVLLSSIQVTQSEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IY 224
                Y++        +    L   +            L+          PA    + + 
Sbjct: 194 GSPVVYIEKFLQRPRHVEIQILADGQGNAIHLGDRDCSLQRRHQKVIEEAPAPGIDEKLR 253

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+      A   IG RG    +FL+       +++E+N +
Sbjct: 254 AEIGDACVKACIDIGYRGAGTFEFLY--EDGGFYFIEMNTR 292


>gi|119356435|ref|YP_911079.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeobacteroides DSM 266]
 gi|119353784|gb|ABL64655.1| carbamoyl-phosphate synthase large subunit [Chlorobium
           phaeobacteroides DSM 266]
          Length = 618

 Score = 45.2 bits (105), Expect = 0.011,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 88/268 (32%), Gaps = 28/268 (10%)

Query: 20  KACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVL 58
           +A   AL++AG++   +           D+   +            ++ H KP       
Sbjct: 118 QAVF-ALKEAGYETIMVNCNPETVSTDYDIADKLYFEPLTFEDTIRIIEHEKPLGVIVSF 176

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T S  +  A    K  +     +   P   + +      
Sbjct: 177 GGQTPLKLSTKLEEAGVTILGTSSTGIDLAEDRKKFGALLEKLAIPHPDYGTAICFEEAQ 236

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                I  P +++P        + +I  D S+   + Q+   +    LLI+++++     
Sbjct: 237 MITRRIGYPVLVRPSYVLGGRAMKIIYSDDSLKEYVDQALFISEKYPLLIDRFLE---TA 293

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQA 237
                DA  D ++  +     +       S +ST +LP      ++   ++    +    
Sbjct: 294 VEFDIDAIADSSDCVISGIMQHVEAAGIHSGDSTSILPYHNISPEVIATMKTYTQILAAN 353

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   G+    +     +  V+ LE+N +
Sbjct: 354 LHVVGLMNVQYAV--QNDHVYVLEVNPR 379


>gi|305662709|ref|YP_003858997.1| Phosphoribosylaminoimidazole carboxylase [Ignisphaera aggregans DSM
           17230]
 gi|304377278|gb|ADM27117.1| Phosphoribosylaminoimidazole carboxylase [Ignisphaera aggregans DSM
           17230]
          Length = 404

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 34/279 (12%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                +D     ++  V+   KPD+    +
Sbjct: 27  GKEVAIEAQRLGLEVIAVDRYEWAPAMHVAHRRYVIDMLNPNALKAVVRKEKPDVIIPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +            +P   +  +A      +  + +V+                 +
Sbjct: 87  EAIAVDALEELESEGFYVVPNARAVKIAMNRIELRKFAAEVLGLPT-TRYRFAENPDEAV 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIV-----IKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
           ++   +  P +IKP    S  G         K  +      +  +       ++ E    
Sbjct: 146 EACEEVGIPCLIKPEMSSSGHGHAKVLDPSPKVIREAYEYAVSHARGRSRRVIVEEFVQL 205

Query: 174 GIELTCGVMGDASLDVTEIA-VPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
             E T       + +          + + Y             P+  P+DI  + + +  
Sbjct: 206 ETEFTVLSYRYVADNGVVTETCEPVEHWRYGE---YHYIESWQPSSKPMDILNKAREIGI 262

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
                +G  GI   +        +V + E+  +P   GM
Sbjct: 263 RVANGLGGFGIFGVEIFLT-KDGRVLFSEVAPRPHDTGM 300


>gi|296224282|ref|XP_002757976.1| PREDICTED: CAD protein [Callithrix jacchus]
          Length = 2197

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 394 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 453

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 454 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 513

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 514 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSTLVAPAFAHT----SQVLV 569

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 570 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 629

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 630 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 687

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 688 LALGIPLPEL 697


>gi|218526182|gb|ACK86498.1| carbamoyl-phosphate synthase [Drepanepteryx phalaenoides]
          Length = 467

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 85/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 123 SGSQAIKALKEHNIQTVLINPNIATVQTSKGLADKVYFLPLIPEYVEQVIRSERPGGVLL 182

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G +     +          + I +   + D+      V      V    +
Sbjct: 183 TFGGQTALNCGVELEKANVFAKYGCKILGTPIQSIIDTEDRRIFANRVLEIGEHVAPSDA 242

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +  +I  P + +       LG       + +    L + ++ +  QL+I++
Sbjct: 243 VYSVEEALAAAEVIGYPVMARAAFSLGGLGSGFANNKEELIA--LANQAFANSTQLIIDK 300

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 301 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 359

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +   P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 360 AINVIRHFGVVGECNIQYALSPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 415

Query: 291 WM 292
            +
Sbjct: 416 KL 417


>gi|296139042|ref|YP_003646285.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
 gi|296027176|gb|ADG77946.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Tsukamurella paurometabola DSM 20162]
          Length = 1811

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/228 (16%), Positives = 76/228 (33%), Gaps = 5/228 (2%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +G  L     D A+ V  G   ED         + + +      A     DK+ +K +  
Sbjct: 71  LGKALQETGADAAW-VGWGFVAEDPAFAEKCAEVGVTFVGPSPEAMRQLGDKIGAKLIAE 129

Query: 102 SCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
             GVPV P     +       +    I  P ++K   GG   GI ++  D  +    L++
Sbjct: 130 EVGVPVAPWSRGPVETLEEAKEKAKDIGYPLMLKATAGGGGRGIRMVASDADLEEAYLRT 189

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                        +++ +      +    +   E A           + +          
Sbjct: 190 REEAERAFGSGVVFLERLVTGARHVEVQVISDGETAWALGVRDCSVQRRNQKVIEESASP 249

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +  + ++  A      +G RG +  +FL+ P    + +LE+N +
Sbjct: 250 VLGPEQVQRLKESAERLAIKVGYRGAATVEFLYHPGDDLLAFLEVNTR 297


>gi|164420133|gb|ABY55006.1| carbamoylphosphate synthetase [Piesmus submarginatus]
          Length = 730

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     + E   +    + I A   + D+    + +S     V    +
Sbjct: 188 TFGGQTGLNCGVDLQRAGVFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 248 VYSVPEAIDAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P +   + +E+N +  ++  S     +   GY    +  
Sbjct: 365 AINVIRHFGVVGECNIQYAVNPYTEDYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|84310013|emb|CAI84704.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 97/223 (43%), Gaps = 10/223 (4%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D    +  +      D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +
Sbjct: 3   DPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDIT 62

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS- 149
           KQ+++   +     ++V     D                IKP   GSS+GI   + +Q  
Sbjct: 63  KQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY 122

Query: 150 ---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +             + +     V+   L       + L   ++    + +       
Sbjct: 123 LDGLADAFKYDYKILVEESIDNPCEVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFV 182

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +   T  LP ++P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 183 DASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|331014698|gb|EGH94754.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. lachrymans str. M302278PT]
          Length = 336

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|251791400|ref|YP_003006121.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya zeae Ech1591]
 gi|247540021|gb|ACT08642.1| acetyl-CoA carboxylase, biotin carboxylase [Dickeya zeae Ech1591]
          Length = 447

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/285 (14%), Positives = 86/285 (30%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSTKSYLNIPAIIAAAEIT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEQVERSGFIFIGPRADTIRLMGDKVSAISAMKKAGVPCVPG 133

Query: 111 ILVNRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
                     ++      I  P +IK   GG   G+ V++ ++ +   +  + +     +
Sbjct: 134 SDGPLGDDMDKNRAIGKRIGYPVIIKASGGGGGRGMRVVRSEKELEQSIAMTRAEAKAAF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
           N+    + +   +   +   V+ D   +   +A           +             I 
Sbjct: 194 NNDMVYMEKYLENPRHVEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            D+ + +      A   I  RG    +FLF   + + +++E+N +
Sbjct: 250 ADLRRYIGERCAKACVDINYRGAGTFEFLF--ENGEFYFIEMNTR 292


>gi|157962621|ref|YP_001502655.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           pealeana ATCC 700345]
 gi|157847621|gb|ABV88120.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           pealeana ATCC 700345]
          Length = 696

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + +  P +IK   GG   G+ +++    +   +  +           +  ++       
Sbjct: 148 ANKMGFPLLIKAAFGGGGKGMRIVESSDEVLEAINSARREAINSFGNDKLLMERYLRQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       ++            ++          PA    D +  ++   A  A +AI 
Sbjct: 208 HVEVQVFADSQGNCIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRVKMGEAAVAAAKAIN 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 268 YEGAGTVEFLLDT-DDSFYFMEMNTR 292


>gi|126347502|emb|CAJ89212.1| putative D-alanine-D-alanine ligase [Streptomyces ambofaciens
          ATCC 23877]
          Length = 85

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 1  MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
          + VL  G S ER  SL+SG+  A AL   G     I++  +    L   + D+     HG
Sbjct: 14 IGVLRAGNSPERPGSLASGEQAAKALTHVGLTTDLINLADTPLSSLRD-RFDV---ARHG 69


>gi|91199798|emb|CAI78154.1| D-alanine-D-alanine ligase [Streptomyces ambofaciens ATCC 23877]
          Length = 157

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 4/60 (6%)

Query: 1   MAVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHG 60
           + VL  G S ER  SL+SG+  A AL   G     I++  +    L   + D+     HG
Sbjct: 86  IGVLRAGNSPERPGSLASGEQAAKALTHVGLTTDLINLADTPLSSLRD-RFDV---ARHG 141


>gi|25027269|ref|NP_737323.1| putative urea carboxylase [Corynebacterium efficiens YS-314]
 gi|259506595|ref|ZP_05749497.1| urea carboxylase [Corynebacterium efficiens YS-314]
 gi|23492550|dbj|BAC17523.1| putative urea carboxylase [Corynebacterium efficiens YS-314]
 gi|259165793|gb|EEW50347.1| urea carboxylase [Corynebacterium efficiens YS-314]
          Length = 1202

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 47/150 (31%), Gaps = 9/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+        +     +       ++  G   L        
Sbjct: 147 AQEIGLPVMVKASNGGGGIGMQSCTGLDQVREAFTRVQRLAEQNFGSGGVFLERLVRPAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD +  V               K         LP      + + + + +    
Sbjct: 207 HIEVQVFGDGAGAVAVFGDRDCSLQRRNQKVVEEAPAPDLPPV----VRQTIHQASRALA 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++  R     +F++DP   + ++LE+N +
Sbjct: 263 ASVDYRSAGTVEFIYDPHREEAYFLEMNTR 292


>gi|330892744|gb|EGH25405.1| carbamoyl phosphate synthase large subunit [Pseudomonas syringae
           pv. mori str. 301020]
          Length = 329

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/260 (12%), Positives = 83/260 (31%), Gaps = 13/260 (5%)

Query: 28  DAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILAS 87
              F+   +     V  ++   KP        G              + I  T    +  
Sbjct: 1   RLYFEPVTL---EDVLEIVRVEKPKGVIVQYGGQTPLKLARALEAAGVPIIGTSPDAIDR 57

Query: 88  ALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKD 147
           A   ++ +      +   P   ++      + +   I  P V++P        + ++ ++
Sbjct: 58  AEDRERFQQMVERLNLRQPPNATVRSEDEAIRAAAKIGYPLVVRPSYVLGGRAMEIVYQE 117

Query: 148 QSIPLDLLQSSSWNHGDQLLIEQY-VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
             +   L ++   ++   +L++ +    IE+    + D +  V    +   +       +
Sbjct: 118 DELKRYLREAVQVSNDSPVLLDHFLNCAIEMDVDAVCDGTDVVIGAIMQHIEQAG---VH 174

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
           S  ++  + P  +P  I  E++         +G  G+             ++ +E+N + 
Sbjct: 175 SGDSACSLPPYSLPAHIQDEMREQVKKMALELGVVGLMNVQLALQGED--IYVIEVNPRA 232

Query: 267 GMTPVSIFPEMAAYAGYSFR 286
             T     P ++   G S  
Sbjct: 233 SRT----VPFVSKCIGVSLA 248


>gi|330928395|ref|XP_003302241.1| hypothetical protein PTT_13990 [Pyrenophora teres f. teres 0-1]
 gi|311322469|gb|EFQ89623.1| hypothetical protein PTT_13990 [Pyrenophora teres f. teres 0-1]
          Length = 2279

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +         +  ++    I  P ++K  +GG   GI  +++++        ++S   G
Sbjct: 222 HIYEKGCTKSWQEGLEKAKAIGFPVMVKASEGGGGKGIRKVEREEDFEQLYKAAASEIPG 281

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +       L   ++ D   +   +            +                 
Sbjct: 282 SPIFIMKLAGSARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTVAGSK 337

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I++E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 338 IFQEMEKAAVSLGRLVGYVSAGTVEYLYSHSDDKFYFLELNPR 380


>gi|325981776|ref|YP_004294178.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
 gi|325531295|gb|ADZ26016.1| acetyl-CoA carboxylase, biotin carboxylase [Nitrosomonas sp. AL212]
          Length = 473

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   GI        +  +  +  S           +++   +   
Sbjct: 148 AAQIGYPVMLKATSGGGGRGIRRCDNADELKHNYARVISEATKAFGNAHVFLEKCIVNPV 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L      V         ++  +     + P+    +   + +  LA +A +++G
Sbjct: 208 HIEVQILADQHGNVIHLYERDCSIQRRNQKLIEIAPSPQLDEAQRQYIGGLAVIAAKSVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  + + +++E+N +
Sbjct: 268 YTNAGTVEFLLD-DNGRFYFMEMNTR 292


>gi|189191818|ref|XP_001932248.1| acetyl-CoA carboxylase [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187973854|gb|EDU41353.1| acetyl-CoA carboxylase [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 2279

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/163 (12%), Positives = 56/163 (34%), Gaps = 5/163 (3%)

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG 163
            +         +  ++    I  P ++K  +GG   GI  +++++        ++S   G
Sbjct: 222 HIYEKGCTKSWQEGLEKAKAIGFPVMVKASEGGGGKGIRKVEREEDFEQLYKAAASEIPG 281

Query: 164 DQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
             + I +       L   ++ D   +   +            +                 
Sbjct: 282 SPIFIMKLAGSARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTVAGSK 337

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           I++E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 338 IFQEMEKAAVSLGRLVGYVSAGTVEYLYSHSDDKFYFLELNPR 380


>gi|47219376|emb|CAG01539.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1267

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/205 (13%), Positives = 61/205 (29%), Gaps = 6/205 (2%)

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
           F        I+   +        L    S    + + +     V     I      + + 
Sbjct: 307 FNFLLCFLWIVFTPKFVIFFFPGLTVEWSEANQKKRIINVPTDVYELGCIQGVEDGLKAA 366

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCG 180
             I  P ++K  +GG   GI  +   +  P    Q  +   G  + I Q       L   
Sbjct: 367 EEIGYPVMVKASEGGGGKGIRKVNCAEDFPNLFRQVQAEVPGSPIFIMQLAKHARHLEVQ 426

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +   +            +                DI+++++  A    + +G 
Sbjct: 427 ILADQYGNAISLFGRDCSVQ----RRHQKIIEEAPATIATSDIFEDMENCAVKLAKMVGY 482

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+       ++LE+N +
Sbjct: 483 VSAGTVEYLYS-QDGSFYFLELNPR 506


>gi|120599113|ref|YP_963687.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella sp.
           W3-18-1]
 gi|120559206|gb|ABM25133.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           W3-18-1]
          Length = 689

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 158 ALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDKLLLERYLRHPR 217

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       T             ++          PA     ++  ++   A  A +AI 
Sbjct: 218 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDELRAQMGEAAVAAAKAID 277

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + +++E+N +
Sbjct: 278 YVGAGTVEFLLDT-DNRFYFMEMNTR 302


>gi|146292816|ref|YP_001183240.1| carbamoyl-phosphate synthase L chain, ATP-binding [Shewanella
           putrefaciens CN-32]
 gi|145564506|gb|ABP75441.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           putrefaciens CN-32]
          Length = 689

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 158 ALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDKLLLERYLRHPR 217

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +       T             ++          PA     ++  ++   A  A +AI 
Sbjct: 218 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDELRAQMGEAAVAAAKAID 277

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + +++E+N +
Sbjct: 278 YVGAGTVEFLLDT-DNRFYFMEMNTR 302


>gi|299149271|ref|ZP_07042331.1| CobN/magnesium chelatase family protein [Bacteroides sp. 3_1_23]
 gi|298512705|gb|EFI36594.1| CobN/magnesium chelatase family protein [Bacteroides sp. 3_1_23]
          Length = 1464

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                 ALE  G+ V  +         +  ++PD   N+ HG  G+  
Sbjct: 214 ATRLIEALEKEGYNVYPVQSMTKFMSFIDEVQPDAIINMAHGRMGDKM 261


>gi|296170429|ref|ZP_06852017.1| acetyl/propionyl-CoA carboxylase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
 gi|295894900|gb|EFG74621.1| acetyl/propionyl-CoA carboxylase [Mycobacterium parascrofulaceum
           ATCC BAA-614]
          Length = 670

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/187 (14%), Positives = 58/187 (31%), Gaps = 19/187 (10%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IKP  GG   G+ ++     +   LL +             +++   L   
Sbjct: 150 ADEVGYPVLIKPSAGGGGKGMRLVDDPSRLRDALLSARREAASSFGDDTLFLERFVLRPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  T   V         L+          P+ +        +   A    +++ 
Sbjct: 210 HIEVQVLADTHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPQTRARIGAAACNTARSVD 269

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             G    +F+       + F++E+N       P +T         A  G    +L+ W +
Sbjct: 270 YVGAGTVEFIVSADRPDEFFFMEMNTRLQVEHP-VTE--------AVTGL---DLVEWQL 317

Query: 294 EDASCLR 300
             A+  +
Sbjct: 318 RVAAGEK 324


>gi|168017909|ref|XP_001761489.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687173|gb|EDQ73557.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 599

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 13/119 (10%), Positives = 29/119 (24%), Gaps = 10/119 (8%)

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
                   +++++Y+ G + +  ++   +  V                          P 
Sbjct: 224 HFDGSDIDIVVQEYIPGRDYSVILIEMGNTPVALNPTTYRCPAINAGADFMTFDIKCHPE 283

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGI----------SRSDFLFDPLSRKVFWLEINVQP 266
                + +      F   + +  R               D        K F LE+N  P
Sbjct: 284 MREELLVRCKDPALFDMLRNLAERAWHVNQMAGNSWGNVDIRVRASDGKPFILEVNPGP 342


>gi|330963428|gb|EGH63688.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. actinidiae str. M302091]
          Length = 331

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|329945636|ref|ZP_08293369.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
 gi|328528639|gb|EGF55604.1| conserved domain protein [Actinomyces sp. oral taxon 170 str.
           F0386]
          Length = 415

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 13/165 (7%)

Query: 124 ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  P V K   G             I  I     +           +    L+++ + G 
Sbjct: 161 MEFPLVAKAAIGADYDRISFPGKRKIWFIDDAAELAGMWRSLKDAGYRSTFLVQECIPGD 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +     +        E+ +  S             +    P  +  + + ++        
Sbjct: 221 DTAMRSVTAYMDSTGELRLIGSARVL---LQDHAPTMIGNPVAMITEAFPDLWDATSRLL 277

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +  G RG +  D   DP   +  + E+N + G    S +   A  
Sbjct: 278 RHAGYRGFANLDIKVDPRDGRELFFEVNPRIG--RNSFYLTAAGA 320


>gi|158451269|gb|ABW38995.1| putative CAD trifunctional protein [Phiditia cuprea]
          Length = 731

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I +   +    + I +   + D+     K       V    +
Sbjct: 191 TFGGQTALNCGVELQKSKIFDKYNVSVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 251 VTSVDEAVAAAVQIGYPVMARSAFSLGGLGSGFANNENELRA--LAHHALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|19552821|ref|NP_600823.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|62390492|ref|YP_225894.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           glutamicum ATCC 13032]
 gi|22095488|sp|P58939|CARB_CORGL RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|21324378|dbj|BAB99002.1| Carbamoylphosphate synthase large subunit (split gene in MJ)
           [Corynebacterium glutamicum ATCC 13032]
 gi|41325829|emb|CAF21618.1| PUTATIVE CARBAMOYL-PHOSPHATE SYNTHASE SUBUNIT [Corynebacterium
           glutamicum ATCC 13032]
          Length = 1113

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 95/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI-------------------------DVDRSVGLVLAHLKP- 51
           SG      L++ G +V+ I                          +D+     +    P 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEMADHTYVEPIEPEYIDKIFAKEIEQGHPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  +Q      LE   +    + I A     D+ + K +V++ G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDRLGILEKYGVELIGADIDAIERGEDRQKFKDIVTTIGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSRVCHNMEEVHETVAELGLPVVVRPSFTMGGLGSGLAYNTEDLERIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   + D   +     +  +  +      +          +  K
Sbjct: 209 VLIEESILGWKEFELELMRDTADNVVVICSIENVDALGVHTGDSVTVAPALTLTDREFQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P+  ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAIIREVGVDTGGCNIQFAINPVDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKMAAKL 331


>gi|330873651|gb|EGH07800.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. morsprunorum str. M302280PT]
          Length = 447

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|301155528|emb|CBW14996.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           parainfluenzae T3T1]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/286 (13%), Positives = 88/286 (30%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSVKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVECSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 SIL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
                         +    I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVGSDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +N+    + +   +   +   V+ D   +   +A           +             I
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAIYLAERDCSMQ----RRHQKVVEEAPAPGI 248

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++ +++      A   IG RG    +FL+   + + +++E+N +
Sbjct: 249 TEEVRRDIGTRCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|255935603|ref|XP_002558828.1| Pc13g03920 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211583448|emb|CAP91461.1| Pc13g03920 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 2273

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 51/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P ++K  +GG   GI  ++ ++  P     +++   G  + I +   +   L  
Sbjct: 229 AKEIGFPVMVKASEGGGGKGIRKVENEEDFPALYNAAANEIPGSPIFIMKLAGNARHLEV 288

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                  ++ ++R A    + +G
Sbjct: 289 QLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKQPTFQAMERAAVSLGKLVG 344

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 345 YVSAGTVEYLYSHSDDKFYFLELNPR 370


>gi|167766419|ref|ZP_02438472.1| hypothetical protein CLOSS21_00924 [Clostridium sp. SS2/1]
 gi|317498303|ref|ZP_07956601.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711828|gb|EDS22407.1| hypothetical protein CLOSS21_00924 [Clostridium sp. SS2/1]
 gi|291560859|emb|CBL39659.1| biotin carboxylase /acetyl-CoA carboxylase carboxyltransferase
           subunit alpha [butyrate-producing bacterium SSC/2]
 gi|316894379|gb|EFV16563.1| acetyl-CoA carboxylase [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V +  +    +   +   +         Y++       
Sbjct: 148 ADEIGYPVMIKASSGGGGKGMRVSRSKEDFEFNFNTAQRESANAFGDDTMYIEKFIENPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    +      V         ++ +        P+    + I K +   A LA +A+G
Sbjct: 208 HVEIQIMADGHGNVVALGERDCSVQRNHQKLIEESPSPAITEKIRKSMNHDAILAAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ DP     +++E+N +
Sbjct: 268 YTNAGTIEFILDPK-GTYYFMEMNTR 292


>gi|268580197|ref|XP_002645081.1| C. briggsae CBR-PCCA-1 protein [Caenorhabditis briggsae]
 gi|74846243|sp|Q612F5|PCCA_CAEBR RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|187026171|emb|CAP34639.1| CBR-PCCA-1 protein [Caenorhabditis briggsae AF16]
          Length = 738

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/160 (15%), Positives = 53/160 (33%), Gaps = 10/160 (6%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQ 165
           I    F +     I  P +IK   GG   G+ V   D+        S       +     
Sbjct: 199 IPEEDFCVKVSREIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFGDDRM 258

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           L+ +   +   +   ++ D   +   +   +        K      +  +P     ++ +
Sbjct: 259 LVEKFIDNPRHIEMQILCDKHGNALWLNERECSIQRRNQKVIEEAPSSFVPP----EMRR 314

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++   A    +A+G       +FL D      ++LE+N +
Sbjct: 315 KMGEQAVQLAKAVGYDSAGTVEFLVDSQRN-FYFLEMNTR 353


>gi|304384785|ref|ZP_07367131.1| acetyl-CoA carboxylase subunit A [Pediococcus acidilactici DSM
           20284]
 gi|304328979|gb|EFL96199.1| acetyl-CoA carboxylase subunit A [Pediococcus acidilactici DSM
           20284]
          Length = 455

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--------------FN-------- 56
                 +L +   +   +        +   L  +                FN        
Sbjct: 14  AVQIIRSLHELDIQAVAVYSTADENSLFVRLADEAVCIGGPQPAESYLNTFNIVNAAILT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     + E   + +         L  +K R+++ + S  VPV P 
Sbjct: 74  GCDAIHPGYGFLSENAEFARLCEESNLKFIGPSYQTIELMGNKSRARETMISANVPVIPG 133

Query: 111 ILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                      M     I  P ++K   GG   GI  I     +      +         
Sbjct: 134 SNGMVRDLENAMVVAEQIGYPVMLKAADGGGGKGIRRINSPDELKKAYQAAQREAQTSFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYK 225
             + Y++ I      +    +                L+ ++       P   I     +
Sbjct: 194 NADLYLEKIIENAKHIEMQVIADQYGHYVFLPERDCSLQRTNQKVIEETPCAVISHTERE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +   A +AI        +FL D      +++E+N +
Sbjct: 254 TLGEIVVRAAKAIKYYNTGTIEFLMD-QDHHFYFMEMNTR 292


>gi|300813586|ref|ZP_07093917.1| Pyruvate carboxylase subunit A [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300512334|gb|EFK39503.1| Pyruvate carboxylase subunit A [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 459

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 32/254 (12%), Positives = 78/254 (30%), Gaps = 20/254 (7%)

Query: 21  ACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYT 80
           +   AL    +    ++VD+ +  V      D      +G   E      ++   +I + 
Sbjct: 50  SIGEALPAKSY----LNVDK-ILTVAKARNCDGIHPG-YGFLSESYYFANLVRKNKIKFI 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGG 136
                      +K  + + +   GVP  P     +      +     IS P ++K   GG
Sbjct: 104 GPDPETIKNMGNKSLAIKTMRENGVPTVPGSDGNVKSVEEAIKIAEKISYPLLLKASSGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGIELTCGVMGDASLDVTE 191
              GI  +   + +              +      + +   +   +   ++ D   ++  
Sbjct: 164 GGKGIRRVDSREELVEKFPLVKMEAKASFKDDSIYMEKLIENPRHIEVQILCDDFSNILC 223

Query: 192 IAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFD 251
           +            + +           I   + +++   A  + +A   +     +FL D
Sbjct: 224 LGERNCSIQ----RENQKMIEESPSPGISQGLREKLYDAARKSAKACAYKNAGTVEFLVD 279

Query: 252 PLSRKVFWLEINVQ 265
                 ++LE+N +
Sbjct: 280 -KDENFYFLEMNTR 292


>gi|270008988|gb|EFA05436.1| hypothetical protein TcasGA2_TC015613 [Tribolium castaneum]
          Length = 2312

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
              I  P +IK  +GG   GI  ++     P    Q  +   G  + + +       L  
Sbjct: 280 AQKIGFPVMIKASEGGGGKGIRKVENADDFPAAFRQVQTEIPGSPIFVMKLAKCARHLEV 339

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                D+++++++ A    + +G
Sbjct: 340 QLLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAVIAASDVFEDMEKAAVRLAKMVG 395

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+D  S   ++LE+N +
Sbjct: 396 YVSAGTVEYLYDT-SGHYYFLELNPR 420


>gi|253581936|ref|ZP_04859160.1| acetyl-CoA carboxylase [Fusobacterium varium ATCC 27725]
 gi|251836285|gb|EES64822.1| acetyl-CoA carboxylase [Fusobacterium varium ATCC 27725]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/216 (18%), Positives = 78/216 (36%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+     I E+  I +            DK  ++      GVPV     + +   
Sbjct: 82  YGFLSENARFGKICEMHNIAFIGPRPECIIKMGDKATARATAIENGVPVTNGTGIIKSIA 141

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHG-----DQLLIE 169
           +++      I+ P +IK   GG   G+ + + D+ +  +++ + +         D  + +
Sbjct: 142 EAKKEVNERITYPVMIKATAGGGGKGMRIARNDEELAANIVAAQNEAESAFGNPDVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              D   +   +MGD   +V  +            K      +  LP     +I K +  
Sbjct: 202 FVEDPRHIEIQIMGDKHGNVIYLGERDCSIQRRHQKLIEEAPSFSLPY----NIRKAMGE 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +AI        +FL D  +   F++E+N +
Sbjct: 258 AAVTLAKAINYDSAGTLEFLVD-KNNDFFFMEMNTR 292


>gi|254450639|ref|ZP_05064076.1| carbamoyl-phosphate synthase, large subunit [Octadecabacter
           antarcticus 238]
 gi|198265045|gb|EDY89315.1| carbamoyl-phosphate synthase, large subunit [Octadecabacter
           antarcticus 238]
          Length = 1140

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 50/319 (15%), Positives = 103/319 (32%), Gaps = 52/319 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQI---------DVDRSV 42
           + +L GG +         G+             AL D G++   I         D D S 
Sbjct: 602 VVILGGGPN-------RIGQGIEFDYCCCHACYALTDQGYETIMINCNPETVSTDYDTSD 654

Query: 43  GLVLAHLKPDLAFNVL---------HG-----NFGEDGLVQAILELLEIPYTHSGILASA 88
            L    L  +    +L         HG            +   L+   IP   +   +  
Sbjct: 655 RLYFEPLTFEHVMEILRVEQSNGTLHGVIVQFGGQTPLKIAQALQDEGIPILGTSPDSID 714

Query: 89  LSMDKMRSKQVVSSCGVPVCPSILVNRFTM--DSQHLISPPYVIKPLKGGSSLGIIVIKK 146
            + D+ R + +V+  G+    + + +      +    I  P VI+P        + +++ 
Sbjct: 715 WAEDRERFQALVNDLGLKQPHNGIASTDEQALEIAESIGFPLVIRPSYVLGGRAMEIVRD 774

Query: 147 DQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
              +   +  +   +    +L++ Y+ G IE+    + D         +   +       
Sbjct: 775 VSQLKRYITSAVVVSGDSPVLLDSYLSGAIEVDVDCLSDGEFTHVAGIMQHIEEAG---V 831

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR---KVFWLEI 262
           +S  ++  + P  +  DI  E+ R       A+   G+    F          +V+ +E+
Sbjct: 832 HSGDSACSLPPHTLSDDIIAEITRQTNALALALKVIGLMNVQFAVKANEDGVEEVYLIEV 891

Query: 263 NVQPGMTPVSIFPEMAAYA 281
           N +   T     P +A   
Sbjct: 892 NPRASRT----VPFVAKAT 906



 Score = 38.7 bits (88), Expect = 1.1,   Method: Composition-based stats.
 Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 21/65 (32%)

Query: 18 SGKACASALEDAGFKVSQI---------DVDRS------------VGLVLAHLKPDLAFN 56
          SG     AL + G++V  +         D + +            V  ++   +PD    
Sbjct: 19 SGAQACKALREEGYRVVLVNSNPATIMTDPNMADATYIEPITPAVVAKIILKERPDALLP 78

Query: 57 VLHGN 61
           + G 
Sbjct: 79 TMGGQ 83


>gi|189238375|ref|XP_969851.2| PREDICTED: similar to acetyl-coa carboxylase [Tribolium castaneum]
          Length = 2321

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 51/146 (34%), Gaps = 6/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
              I  P +IK  +GG   GI  ++     P    Q  +   G  + + +       L  
Sbjct: 280 AQKIGFPVMIKASEGGGGKGIRKVENADDFPAAFRQVQTEIPGSPIFVMKLAKCARHLEV 339

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                D+++++++ A    + +G
Sbjct: 340 QLLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAVIAASDVFEDMEKAAVRLAKMVG 395

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+D  S   ++LE+N +
Sbjct: 396 YVSAGTVEYLYDT-SGHYYFLELNPR 420


>gi|149923959|ref|ZP_01912345.1| acetyl-CoA carboxylase, biotin carboxylase [Plesiocystis pacifica
           SIR-1]
 gi|149815191|gb|EDM74740.1| acetyl-CoA carboxylase, biotin carboxylase [Plesiocystis pacifica
           SIR-1]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/218 (13%), Positives = 70/218 (32%), Gaps = 7/218 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E       ++   + +            DK+ +++ +   GVPV    
Sbjct: 78  DAVHPG-YGFLSERPEFVDAVQKCGMTFIGPDPEHMRTMGDKVMARETMKKAGVPVLEGT 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +        +   I  P ++K   GG   G+ ++     +   L  + +         
Sbjct: 137 TVLESGEEARAAAERIGLPVILKASAGGGGRGMKIVWDLDEVAPTLQTAQAEALAAFGCG 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEV 227
           + Y +    +   +    +      V         ++          PA    + + +E+
Sbjct: 197 DMYCERYITSPRHIEIQIVADQHGNVIDLLERECSVQRRHQKVIEEAPASNYSEKLRREM 256

Query: 228 QRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              A  A +AI    +   +FL D    + +++E+N +
Sbjct: 257 GEAAIAAARAINYNSLGTVEFLLD--GDRFYFMEMNTR 292


>gi|153833716|ref|ZP_01986383.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio harveyi HY01]
 gi|148869995|gb|EDL68955.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio harveyi HY01]
          Length = 391

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 35/283 (12%), Positives = 81/283 (28%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                +D    +++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYANAPAMQVAHRSYVIDMLDGQALEEIINKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + ++                 
Sbjct: 82  EAIATDKLVELEEKGLNVVPTAKATKLTMNREGIRRLAAEELALNT-SPYQFADSFEDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK ++ +        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKTEEDVQTA--WEYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENAIKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|124485110|ref|YP_001029726.1| carbamoyl phosphate synthase large subunit [Methanocorpusculum
           labreanum Z]
 gi|167006443|sp|A2SQ53|CARB_METLZ RecName: Full=Carbamoyl-phosphate synthase large chain; AltName:
           Full=Carbamoyl-phosphate synthetase ammonia chain
 gi|124362651|gb|ABN06459.1| carbamoyl-phosphate synthase large subunit [Methanocorpusculum
           labreanum Z]
          Length = 1053

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/293 (13%), Positives = 93/293 (31%), Gaps = 32/293 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS---------------------VGLVLAHLKPDLAFNV 57
           G     A+ + G +V  ++ + +                     +  ++   KPD   + 
Sbjct: 30  GSQACKAVREEGIEVVLVNSNPATIQTDPETADKVYVEPLKADIIAEIIKKEKPDGILSG 89

Query: 58  LHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
           + G  G +   +      LE ++I  T    +      D  +   +     +P    +  
Sbjct: 90  MGGQTGLNLTAELYELGALEGVQILGTPLEAIYHGEDRDLFKKLMLEIGEPIPKSFILTK 149

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                ++   +  P +I+P       G  V    + +   +    + +   Q+LIE+ V 
Sbjct: 150 IEQLDEAYEEVGLPAIIRPAYTLGGAGGGVANTKEELRTIVEHGLTKSRVHQVLIEESVK 209

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFL 233
           G               T I +   +       ++  +        +  D +  ++R A  
Sbjct: 210 GWN-EIEFEVMRDAADTCIIICGMENVDPMGVHTGESVVVAPILSLTSDEFGIMRRAAIK 268

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
             +A+  +G     F F+  +     +E+N  P ++  S     +   GY   
Sbjct: 269 IIRALNVQGGCNIQFAFN--NGDYRVIEVN--PRVSRSS--ALASKATGYPIA 315



 Score = 42.2 bits (97), Expect = 0.094,   Method: Composition-based stats.
 Identities = 39/298 (13%), Positives = 92/298 (30%), Gaps = 39/298 (13%)

Query: 24  SALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNF 62
            +L + G +V  +         D D              V  +L     D       G  
Sbjct: 563 KSLREEGIEVHILNNNPETVSTDFDTSDRLYFEPMQLEDVVNILRKGDYDGVMVQFGGQN 622

Query: 63  GEDGLVQAILE------LLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRF 116
             +  +    E        ++  T    +  A   ++       ++   P   S    + 
Sbjct: 623 SVNLAIPIQEEIKLFGLKTKVLGTSPDNMDVAEDRNRFSVLLDQNNIPSPANGSAYSEKE 682

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GI 175
                + I  P +++P        + ++  +  +   + ++   ++   +LI++Y+D   
Sbjct: 683 AYAIANKIGYPVLVRPSYVLGGRAMELVHDELELQTYIKEAVRVSNTHPVLIDRYLDNAT 742

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLA 234
           EL    + D    +    +   +    E    S +S  V+P +    +    V+      
Sbjct: 743 ELDVDAVSDGETVLIGGVMEHIE----EAGVHSGDSACVIPTQTLTPEQIATVKDYTRKI 798

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWM 292
             ++G  G+    +        V+ LE N +   T     P ++   G    ++   +
Sbjct: 799 ALSLGVVGLINIQYAI--HKGTVYVLEANPRASRT----VPFVSKATGLPLAKIAAKL 850


>gi|90417871|ref|ZP_01225783.1| methylcrotonyl-CoA carboxylase, alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
 gi|90337543|gb|EAS51194.1| methylcrotonyl-CoA carboxylase, alpha subunit [Aurantimonas
           manganoxydans SI85-9A1]
          Length = 669

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 45/150 (30%), Gaps = 5/150 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+  ++        L  +              ++       
Sbjct: 148 ADQIGYPVLIKARAGGGGKGMRRVEDPGEFRAALDGARREGQASFGDPHCLIEKYVEKPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +       +             L+          PA  +P ++   +   A  A +AIG
Sbjct: 208 HIEIQVFGDSHGNAVHLFERDCSLQRRHQKVIEEAPAPGMPAEMRAAMGEAAVTAAKAIG 267

Query: 240 CRGISRSDFLFDPLSR----KVFWLEINVQ 265
             G    +F+ D        + +++E+N +
Sbjct: 268 YAGAGTIEFIVDASDGLRPDRFWFMEMNTR 297


>gi|120405044|ref|YP_954873.1| carbamoyl-phosphate synthase ATP-binding subunit L [Mycobacterium
           vanbaalenii PYR-1]
 gi|119957862|gb|ABM14867.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Mycobacterium vanbaalenii PYR-1]
          Length = 660

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 19/142 (13%), Positives = 45/142 (31%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++KP  GG   G+ V++    +   L+ +             +++   L    +   
Sbjct: 153 FPVLVKPSAGGGGKGMRVVQDASELRAALVSARREAASAFGDDTLFLERFVLNPRHIEVQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
            L      V         L+          P+ +        +   A    +++   G  
Sbjct: 213 VLADAHGNVVHLGERECSLQRRHQKVIEEAPSPLLDPQTRARIGAAACDTARSVDYTGAG 272

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+       + F++E+N +
Sbjct: 273 TVEFIVSADRPDEFFFMEMNTR 294


>gi|28871976|ref|NP_794595.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213968006|ref|ZP_03396152.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
 gi|301383678|ref|ZP_07232096.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato Max13]
 gi|302059953|ref|ZP_07251494.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato K40]
 gi|302131619|ref|ZP_07257609.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. tomato NCPPB 1108]
 gi|28855229|gb|AAO58290.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato str. DC3000]
 gi|213927349|gb|EEB60898.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas syringae
           pv. tomato T1]
          Length = 447

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACIDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|59800511|ref|YP_207223.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA 1090]
 gi|293397758|ref|ZP_06641964.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           F62]
 gi|59717406|gb|AAW88811.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           FA 1090]
 gi|291611704|gb|EFF40773.1| acetyl-CoA carboxylase, biotin carboxylase [Neisseria gonorrhoeae
           F62]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 9/220 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI 111
           D      +G   E+      +E     +         L  DK+ +K  + + GVP  P  
Sbjct: 76  DAVHPG-YGFLAENADFAEQVEQSGFTFIGPKPDTIRLMGDKVSAKHAMIAAGVPCVPGS 134

Query: 112 L-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                  +   +     +  P +IK   GG   G+ V++K + +   +  + +       
Sbjct: 135 DGALPDDDAEILKIADKVGYPVIIKASGGGGGRGMRVVEKKEDLLQSVEMTKAEAGAAFG 194

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
               Y++        +    L                L+          PA    +  ++
Sbjct: 195 NPMVYMERYLQRPRHVEIQVLADEHGNAVYLAERDCSLQRRHQKVIEEAPAPFIDEKARK 254

Query: 227 VQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
               A   A + IG RG    +FL+     + F++E+N +
Sbjct: 255 KIGKACTDACKRIGYRGAGTFEFLY--EDGEFFFIEMNTR 292


>gi|27365697|ref|NP_761225.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           CMCP6]
 gi|37680147|ref|NP_934756.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           YJ016]
 gi|81587763|sp|Q8DA32|PURT_VIBVU RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|81757292|sp|Q7MK47|PURT_VIBVY RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|27361846|gb|AAO10752.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           CMCP6]
 gi|37198893|dbj|BAC94727.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio vulnificus
           YJ016]
          Length = 391

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 78/268 (29%), Gaps = 27/268 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D   D                    +  V+A  +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYPDAPAMQVAHRSYVFDMLDASELEKVIAAEQPAFVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + +              +  +
Sbjct: 82  EAIATDKLVELEEQGLNVVPSAKATKLTMNREGIRRLAAEELGLTT-SPYRFADNYQQFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   +S P V+KP+   S  G  VIK    I        +   G        V+G    
Sbjct: 141 EAVEAVSIPCVVKPVMSSSGKGQSVIKSPADIEKA--WQYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P ++  +  K  +  A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQQMSENAIKAAEYTAEQVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  GI   +        KV + E++ +P
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP 282


>gi|127513795|ref|YP_001094992.1| pyruvate carboxylase, propionyl-CoA carboxylase [Shewanella loihica
           PV-4]
 gi|126639090|gb|ABO24733.1| pyruvate carboxylase, propionyl-CoA carboxylase [Shewanella loihica
           PV-4]
          Length = 1094

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 40/248 (16%), Positives = 76/248 (30%), Gaps = 10/248 (4%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           AL+  G K    D+   +  V      D      +G   E+           I +  S  
Sbjct: 53  ALKGRGVKAYL-DI-EQLIAVAKAHGCDAVHPG-YGFLSENSSFSKRCHEEGICFIGSSA 109

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS-----PPYVIKPLKGGSSL 139
               L  +K  +++       P+   I       + Q   +        +IK L GG   
Sbjct: 110 ELLDLLGNKATARETALRSDTPLTGGINKPCSLEEVQAFFTSLGDGAAVMIKALAGGGGR 169

Query: 140 GIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDF 199
           G+  + + + +     Q            E YV+ +      +    L     A   +  
Sbjct: 170 GMRPVSRYEDLAEAYRQCREEAIIAFGSGELYVEQLVQHARHIEVQILGDGTGAAVHAWE 229

Query: 200 YSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR-KV 257
               L+  +     + P+    D     +   A      +  +G+   +FL D     K 
Sbjct: 230 RECTLQRRNQKLLEIAPSPSLDDATRMPIIESALQLASDVKYQGLGTFEFLLDADDHSKF 289

Query: 258 FWLEINVQ 265
           +++EIN +
Sbjct: 290 YFMEINPR 297


>gi|307104173|gb|EFN52428.1| hypothetical protein CHLNCDRAFT_138936 [Chlorella variabilis]
          Length = 1204

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/229 (14%), Positives = 75/229 (32%), Gaps = 7/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +  V      D+     +G   E+       +   I +            DK  ++++  
Sbjct: 77  IVEVAKRQGVDVVHPG-YGFLSENAAFARECQRQGITFVGPLPETIEAMGDKTVARRLAQ 135

Query: 102 SCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            CGVPV P       + +   + +     P ++K   GG   G+ V++ +  +     ++
Sbjct: 136 ECGVPVVPGTDDALASAEEAKVFAAAAGYPVILKARSGGGGRGMRVVRAEDEMEDLFARA 195

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           S+           + +        +    L      V         ++        + PA
Sbjct: 196 SNEAKAAFGDGGMFCEKYVEDPRHIEVQILADNHGGVVHLYERDCSVQRRHQKVVEMAPA 255

Query: 218 KI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                ++ +++   A    + IG R     +F+ D      ++LE+N +
Sbjct: 256 PGLAAEVKEKLYEAAVKLARHIGYRNAGTVEFMVDKQ-GAFYFLEVNPR 303


>gi|254933989|gb|ACT87603.1| carbamoylphosphate synthetase [Fulgoraecia exigua]
          Length = 731

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 93/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKAIQEENIRTVLINPNIATVQTSKGLADKVYFLPLTPEYVEQVIKAERPTGILL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + +   +    + I +   + D+    + ++     V    +
Sbjct: 191 TFGGQTALNCGVELEKAGVFKKYNVKVLGTPIQSIIDTEDRKIFAEKINHIGEQVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG      +  +   +L   + +H DQL+I++
Sbjct: 251 VSTVEEALNAAQKIGYPVMSRAAFSLGGLGSGFANNEDEL--KILAHQALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y  +++ 
Sbjct: 309 SLKGW-KEVEYEVMRDAYDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNREYYLLRQT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIKHFGIVGECNIQYALNPNSEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|269962177|ref|ZP_06176530.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio harveyi 1DA3]
 gi|269833008|gb|EEZ87114.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio harveyi 1DA3]
          Length = 391

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 36/283 (12%), Positives = 77/283 (27%), Gaps = 29/283 (10%)

Query: 19  GKACASALEDAGFKVSQID----------------VD----RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                +D    +++  ++   +P      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYADAPAMQVAHRSYVIDMLDGQALEEIINKEQPAYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + ++                 
Sbjct: 82  EAIATDKLVELEEKGLNVVPTAKATKLTMNREGIRRLAAEELALNT-SPYQFADSFEDFK 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V+KP+   S  G  VIK ++ +        +   G        V+G    
Sbjct: 141 AAVEHVGIPCVVKPVMSSSGKGQSVIKSEEDVQTA--WDYAQEGGRTGAGRVIVEG--FI 196

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
                   L V               +          P  +  +  K  +  A     A+
Sbjct: 197 DFDYEITLLTVRAADGVHFCDPIGHRQEDGDYRESWQPQAMSDNAIKAAEYTAEKVVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYA 281
           G  GI   +        KV + E++ +P      +   ++   
Sbjct: 257 GGYGIFGVELFV--KGDKVIFNEVSPRP--HDTGMVTMISQEM 295


>gi|253733143|ref|ZP_04867308.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus TCH130]
 gi|253728899|gb|EES97628.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus TCH130]
          Length = 453

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEIMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|330960950|gb|EGH61210.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. maculicola str. ES4326]
          Length = 649

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 48/141 (34%), Gaps = 2/141 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ V+++   +   L  +              V+   L+   +   
Sbjct: 157 YPVLLKATAGGGGKGMKVVEQASELAEALASAQREAQSSFGDARMLVEKYVLSPRHVEIQ 216

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
                       +     ++          PA     ++ K +   A  A QAIG  G  
Sbjct: 217 VFADQHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIGYVGAG 276

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL D    + F++E+N +
Sbjct: 277 TVEFLLDAR-GEFFFMEMNTR 296


>gi|330953381|gb|EGH53641.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae Cit 7]
          Length = 649

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHIGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +               +     ++          PA       ++     A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTATLRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|322697946|gb|EFY89720.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Metarhizium acridum CQMa 102]
          Length = 1170

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 115 SGSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVSYVIEKEKPDGIFL 174

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G    +       Q + E   +    + +    +S D+    + +    +P+  SI 
Sbjct: 175 SFGGQTALNLGVQMQRQGLFEKYGVKVLGTSVRTLEVSEDRDLFAKALEEINIPIAKSIA 234

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+   +  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 235 VSTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 292

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +F      ++  +        +  + Y  ++  
Sbjct: 293 SLKGWKELEYEVVRDANNNCITVCNMENFDP-LGIHTGDSIVVAPSQTLSDEEYHMLRSA 351

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 352 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 403


>gi|254581672|ref|XP_002496821.1| ZYRO0D08910p [Zygosaccharomyces rouxii]
 gi|238939713|emb|CAR27888.1| ZYRO0D08910p [Zygosaccharomyces rouxii]
          Length = 2346

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 69/234 (29%), Gaps = 13/234 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS-------M 91
           +  +   LA+ K  + F    G  G             I   H+ +     S        
Sbjct: 271 NPDLPETLANSKRKILFI---GPPGNAMRSLGDKISSTIVAQHAKVPCIPWSGTGVDKVR 327

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
               S  V     +            ++    I  P ++K  +GG   GI  + + +   
Sbjct: 328 IDYESGLVCVDDEIYKQGCSTSAEDGLERAKKIGFPVMVKASEGGGGKGIRQVHRAEDFI 387

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               Q+++   G  + I +   G      V   A      +            +      
Sbjct: 388 PLYNQAANEIPGSPIFIMKLA-GRARHLEVQLLADQYGANV--SLFGRDCSVQRRHQKII 444

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     D +KE+++ A    + +G       ++L+     + ++LE+N +
Sbjct: 445 EEAPVTIAKPDTFKEMEKAAVRLGKLVGYVSAGTVEYLYSHDDDQFYFLELNPR 498


>gi|281421177|ref|ZP_06252176.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella copri DSM
           18205]
 gi|281404712|gb|EFB35392.1| phosphoribosylglycinamide formyltransferase 2 [Prevotella copri DSM
           18205]
          Length = 393

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 34/234 (14%), Positives = 75/234 (32%), Gaps = 12/234 (5%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++  V+    PD+    +      + L     E +++  +   +  +            
Sbjct: 54  DALTAVVEKHHPDIIVPEIE-AIRTERLFDFEKEGIQVVPSARAVNYTMNRRAIRDLAAK 112

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
                              ++   I  P V+KPL   S  G   +  D  +     ++  
Sbjct: 113 ELGLRTAKYFYAKTFEEFKNAADEIGFPCVVKPLMSSSGHGQSYVHNDDELKEAYKEAME 172

Query: 160 WNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
              GD  +++IE+++D       +        T    P         +          P 
Sbjct: 173 EGRGDVKEVIIEEFIDFDSEFTLLTVTQKDGPTLFCPPIGHV-----QKGGDYRESWQPF 227

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           +IP +  K+ + +A    +A+   G+   +F       +V + E++ +P   GM
Sbjct: 228 QIPEEALKKAEHIAGEVTKALTGAGLWGVEFFLSKQ-GEVIFSELSPRPHDTGM 280


>gi|186703886|emb|CAQ43571.1| Acetyl-CoA carboxylase and Acetyl-CoA carboxylase
           [Zygosaccharomyces rouxii]
          Length = 2231

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/234 (14%), Positives = 69/234 (29%), Gaps = 13/234 (5%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS-------M 91
           +  +   LA+ K  + F    G  G             I   H+ +     S        
Sbjct: 156 NPDLPETLANSKRKILFI---GPPGNAMRSLGDKISSTIVAQHAKVPCIPWSGTGVDKVR 212

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
               S  V     +            ++    I  P ++K  +GG   GI  + + +   
Sbjct: 213 IDYESGLVCVDDEIYKQGCSTSAEDGLERAKKIGFPVMVKASEGGGGKGIRQVHRAEDFI 272

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               Q+++   G  + I +   G      V   A      +            +      
Sbjct: 273 PLYNQAANEIPGSPIFIMKLA-GRARHLEVQLLADQYGANV--SLFGRDCSVQRRHQKII 329

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                     D +KE+++ A    + +G       ++L+     + ++LE+N +
Sbjct: 330 EEAPVTIAKPDTFKEMEKAAVRLGKLVGYVSAGTVEYLYSHDDDQFYFLELNPR 383


>gi|149178634|ref|ZP_01857220.1| biotin carboxylase [Planctomyces maris DSM 8797]
 gi|148842560|gb|EDL56937.1| biotin carboxylase [Planctomyces maris DSM 8797]
          Length = 445

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/214 (17%), Positives = 74/214 (34%), Gaps = 14/214 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +     I +      A A   DK+ ++++  +  V V P     +   
Sbjct: 82  YGFLAENAHFAEVCRSCNIEFIGPPHEAMAQLGDKVSAREIAKAANVHVSPGTEGLVTDE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSWNHGDQLLIE 169
              +     I  P +IK   GG   G+ V + D S+   L        +++ +    + +
Sbjct: 142 AEALKVAQEIGYPVLIKATAGGGGKGMRVARNDISLKAGLKAAAAEAEAAFKNSGVYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   +M D   +V  +            K    +    LP  +  DI K    
Sbjct: 202 YIENPRHVEVQIMADNHGNVLHLWERDCSLQRRHQKLVEESPAPNLPHSVREDICK---- 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            A    +A G       +FL  P   + +++E+N
Sbjct: 258 AACRLIEAAGYTNAGTVEFLVGP-DNQFYFIEVN 290


>gi|293395717|ref|ZP_06639999.1| phosphoribosylglycinamide formyltransferase 2 [Serratia odorifera
           DSM 4582]
 gi|291421654|gb|EFE94901.1| phosphoribosylglycinamide formyltransferase 2 [Serratia odorifera
           DSM 4582]
          Length = 377

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                      +++  ++   +PD     +
Sbjct: 9   GKEVAIECQRLGLEVIAVDRYANAPAMHVAHRSHVINMLDGQALKTLIEQERPDYIVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + ++                 
Sbjct: 69  EAIATDMLVQLEQQGHHVVPCAEATRLTMNREGIRRLAAENLALPT-SSYRFADSQDAFY 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G  +I+    +        +   G        V+G+   
Sbjct: 128 QAVDDIGYPCIIKPVMSSSGKGQSLIRDASQLAAA--WEYAQQGGRAGGGRVIVEGLVKF 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  I     +  Q +A     A+
Sbjct: 186 DVEITLLTISAVDGVHFCAPIGHRQEDG--DYRESWQPQCISPLALQRAQAIAERVVTAL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 244 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 274


>gi|187234489|gb|ACD01483.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Enyo ocypete]
          Length = 731

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 191 TFGGQTALNCGVELEKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 251 VTSVDEALAAAVQIGYPVMARSAFSLGGMGSGFANNEEELKT--LAHHALSHSDQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|152987758|ref|YP_001345992.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa PA7]
 gi|150962916|gb|ABR84941.1| probable acyl-CoA carboxylase subunit [Pseudomonas aeruginosa PA7]
          Length = 457

 Score = 45.2 bits (105), Expect = 0.012,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 58/183 (31%), Gaps = 17/183 (9%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI + +    +  +   +             Y++      
Sbjct: 150 CAEEVGYPLLVKASAGGGGRGIRIARDADELRREFPIAQREAQAAFGSPAVYLERFIRQA 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L   E  V   +      +           A +     + +   A    Q++G
Sbjct: 210 RHIEVQILGDGERVVHLFERECSLQRRRQKVFEEAPSAALDGAQRQALCESAVRLAQSLG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVE 294
            RG    ++LFD  S + F++E+N       P         EM    G    +L+  M+ 
Sbjct: 270 YRGAGTLEYLFDAHSGEFFFIEMNTRIQVEHP-------VSEM--VTGI---DLVQAMLR 317

Query: 295 DAS 297
            A+
Sbjct: 318 IAA 320


>gi|323698683|ref|ZP_08110595.1| phosphoribosylglycinamide formyltransferase 2 [Desulfovibrio sp.
           ND132]
 gi|323458615|gb|EGB14480.1| phosphoribosylglycinamide formyltransferase 2 [Desulfovibrio
           desulfuricans ND132]
          Length = 393

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/274 (12%), Positives = 64/274 (23%), Gaps = 39/274 (14%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK      +  G +V  +D                       ++  V+   KPD     +
Sbjct: 24  GKEVVIEAQRLGIEVVVVDRYEDTPAMQVAHRSYVMSMLDGDALRRVITEEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +         +P  ++  L       +  + + V                  
Sbjct: 84  EAIATSTLVELEKEGFNVVPTANATRLTMDREGIRRLAAEEVGLTT-SPYRFADTEEEYR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P VIKP+   S  G   ++ +  I              +        G    
Sbjct: 143 AAVAEIGIPCVIKPVMSSSGKGQSTVRSEADIQKAW----------EYSQSGGRTGKGRV 192

Query: 179 CGVMGDASLDVT------EIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF 232
                              I            + +        P  +      + Q  A 
Sbjct: 193 IIEKFVPFDYEISLLTVRHIDGTTFCEPIGHRQENGDYRESWQPQPMSEAARAKAQEYAR 252

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               A+G RG+   +         V + E++ +P
Sbjct: 253 KITDALGGRGLFGVELFV--KDDDVIFSEVSPRP 284


>gi|312886483|ref|ZP_07746092.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
 gi|311301111|gb|EFQ78171.1| acetyl-CoA carboxylase, biotin carboxylase [Mucilaginibacter
           paludis DSM 18603]
          Length = 494

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 28/217 (12%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++    +        A  +  +K+ +K       +P+ P    
Sbjct: 76  AIHPGYGFLSENAAFARMVREAGLILVGPSPEAMEVMGNKLSAKAAALKYHIPMVPGTEE 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       D    +  P +IK   GG   G+ +++        +  + S          
Sbjct: 136 AITDVNDARDRAVEVGFPILIKAAAGGGGKGMRIVENVDEFEEQMQLAVSEATSAFGDGS 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++    +   +    L  T   +         ++          P+ +   +I +++ 
Sbjct: 196 VFIERYVSSPRHIEIQVLGDTHGNIVHLFERDCSVQRRHQKVIEEAPSSVLTPEIRQQMG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A    +++   G    +F+ D      ++LE+N +
Sbjct: 256 KCAVDVARSVNYTGAGTVEFIMD-DDLNFYFLEMNTR 291


>gi|295696490|ref|YP_003589728.1| pyruvate carboxylase [Bacillus tusciae DSM 2912]
 gi|295412092|gb|ADG06584.1| pyruvate carboxylase [Bacillus tusciae DSM 2912]
          Length = 1152

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/235 (14%), Positives = 76/235 (32%), Gaps = 8/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +   L+ D      +G   E+    A  E   I +            DK+ 
Sbjct: 67  LDI-EGIIALAKRLEVDAIHPG-YGFLAENARFAARCEEEGIAFIGPRPQHLEAFGDKVT 124

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++Q+    G+PV P     +   +  +        P ++K   GG   G+ V++  + + 
Sbjct: 125 ARQMAVEAGLPVIPGTPEPVRQLQDALRFAREHGFPLIVKAAAGGGGRGMRVVRHKEDLE 184

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
             L  + S           Y++        +    L      +         ++      
Sbjct: 185 EALRMARSEAEKSFGDGTVYLEKFLEHPKHIEVQILGDRHGNLVHLFERDCSIQRRHQKV 244

Query: 212 THVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             + PA    +   + +   A    +  G  G    +FL  P     +++E+N +
Sbjct: 245 VEIAPALTLTEPQRQAICDAALRLMRRAGYVGAGTVEFLVAP-DGSFYFIEVNPR 298


>gi|255536279|ref|YP_003096650.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriaceae
           bacterium 3519-10]
 gi|255342475|gb|ACU08588.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteriaceae
           bacterium 3519-10]
          Length = 450

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+  + K + +      +       + +G   + +  V+  
Sbjct: 148 AAEMGYPVMIKATAGGGGKGMRAVWKAEDLHEHWDSAVQEATAAFGNGGMYMEKLIVEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD       ++           + +   +       +  ++ +++   A  A 
Sbjct: 208 HIEIQVAGDQYGKACHLSERDCSVQ----RRNQKLTEETPSPFMTDELREKMGAAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G+   +FL D   R  +++E+N +
Sbjct: 264 EYIKYEGVGTIEFLVD-KDRNFYFMEMNTR 292


>gi|1228049|dbj|BAA11423.1| multifunctional protein CAD [Homo sapiens]
          Length = 2225

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 85/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTTVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 GNSLEQAQAAAERLGYPVLVRAAFAVGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|254934033|gb|ACT87625.1| carbamoylphosphate synthetase [Orthonama obstipata]
          Length = 974

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 374 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 433

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + V S    V    +
Sbjct: 434 TFGGQTALNCGVELQKSKIFEKYNVQVLGTPIQSIVDTEDRKIFAEKVYSIGEKVAPSAA 493

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + ++ DQL+I++
Sbjct: 494 VTSVDEAVAAAKQIGYPVMARSAFSLGGLGSGFANNEEELRA--LAHQALSYSDQLIIDK 551

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 552 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 610

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 611 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 666

Query: 291 WM 292
            +
Sbjct: 667 KL 668


>gi|254934009|gb|ACT87613.1| carbamoylphosphate synthetase [Lagoa crispata]
          Length = 975

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 435 TFGGQTALNCGVELQKSKVFEKYNVNVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 495 VSSVDEAVTAALQIGYPVMARSAFSLGGLGSGFAHNEEELRG--LAYHAFSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + F +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGIVGECNIQYALNPNTEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|218526190|gb|ACK86502.1| carbamoyl-phosphate synthase [Italochrysa insignis]
          Length = 918

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 131 SGSQAIKAMKEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRSERPGGVLL 190

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + V+     V    +
Sbjct: 191 TFGGQTALNCGVELEKAGVFEKYGCKILGTPIKSIIETEDRKMFAEKVNEIGEKVAPSAA 250

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++ ++I  P + +       LG       + +    L + +  H +QL+I++
Sbjct: 251 VYSVEEALEAANIIGYPVMARAAFSLGGLGSGFAHNKEQLKS--LATQALAHSNQLIIDK 308

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 309 SLKGW-KEVEYEVVRDSFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNMLRTT 367

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 368 AINVIRHFGVVGECNIQYALNPHSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 423

Query: 291 WM 292
            +
Sbjct: 424 KL 425


>gi|218135296|ref|ZP_03464100.1| hypothetical protein BACPEC_03201 [Bacteroides pectinophilus ATCC
           43243]
 gi|217990681|gb|EEC56692.1| hypothetical protein BACPEC_03201 [Bacteroides pectinophilus ATCC
           43243]
          Length = 316

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/253 (16%), Positives = 80/253 (31%), Gaps = 24/253 (9%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D   ++  +      D+   +          +++I E + +    S      L  DK+  
Sbjct: 57  DYTDTLVDICKKENIDIIIPLHEDEIILIAKIRSIFEEIGVMVALSDYEKIKLCRDKLNL 116

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
              ++  G+   P+     +   S   I+     KP  G  S+    +   + +   +  
Sbjct: 117 NNYLADAGIQSVPTYKAEDYCESSGDRIN--VFAKPRAGAGSVDTFHVHSKKLLEALIE- 173

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                + +QL+++  + G E    V  D   +       K                    
Sbjct: 174 ----EYNEQLIVQPDMSGREYGVDVYVDMMSNEIISCFCKEKLR----------MRAGET 219

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPE 276
            K   D+   V  L   A + IG  G    D +    + +   LEIN + G      +P 
Sbjct: 220 EKSVTDMNASVIELVSRAVKKIGLVGPLDVDVM--EHNGQYSILEINPRFG----GGYPH 273

Query: 277 MAAYAGYSFRELL 289
                G +F EL+
Sbjct: 274 AYE-CGANFIELI 285


>gi|95928254|ref|ZP_01311002.1| phosphoribosylglycinamide formyltransferase 2 [Desulfuromonas
           acetoxidans DSM 684]
 gi|95135525|gb|EAT17176.1| phosphoribosylglycinamide formyltransferase 2 [Desulfuromonas
           acetoxidans DSM 684]
          Length = 393

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 42/318 (13%), Positives = 88/318 (27%), Gaps = 46/318 (14%)

Query: 4   LMGGISSEREVSLSSGKACASALEDAGFKVSQID--------------------VDRSVG 43
           L G  S E    L  GK      +  G +V   D                        + 
Sbjct: 17  LCG--SGE----L--GKEVVIEFQRLGVEVIACDSYANAPAMQVADRSYTFSMLDGEELR 68

Query: 44  LVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC 103
            V+   +P      +        +         +P   +  L       +  + + +S  
Sbjct: 69  RVVEFERPHYIVPEVEAIATATLVELEKEGFNVVPTALAAQLTMNREGIRRLAAEDLSLP 128

Query: 104 GVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH- 162
                 +     F       +  P V+KP+   S  G  V++ +  +      +      
Sbjct: 129 TTRYRFAEDEVTFQAAVA-ELGFPCVVKPIMSSSGKGQSVVRSEDDLDAAWDYAQKGGRA 187

Query: 163 GDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD 222
           G   +I +     +    ++     + T   +P                    P  +  +
Sbjct: 188 GGGKVIVEAFLDFDYEITLLTVRHKEGTSFCLPIGHRQE-----DGDYRESWQPQAMSGE 242

Query: 223 IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT--------PVSIF 274
           +  + Q++A     A+G  GI   +        +V++ E++ +P  T         +S F
Sbjct: 243 VLDKAQQMAKQITDALGGWGIFGVELFI--QGSEVYFSEVSPRPHDTGLVTLISQDLSEF 300

Query: 275 PEMAAYA-GYSFRELLLW 291
              A    G     ++  
Sbjct: 301 ALHARAILGLPIPNIVQH 318


>gi|327398982|ref|YP_004339851.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
 gi|327181611|gb|AEA33792.1| acetyl-CoA carboxylase, biotin carboxylase [Hippea maritima DSM
           10411]
          Length = 517

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/286 (12%), Positives = 77/286 (26%), Gaps = 46/286 (16%)

Query: 19  GKACASALEDAGFKVSQID------------------------------VDRSVGLVLAH 48
                 A    G +   +                               +D+ +  V   
Sbjct: 18  AIRVMRACRKMGIETVAVYSEADRDALHVRYADEAYFIGPPAPADSYLRIDK-IMEVAIK 76

Query: 49  LKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVC 108
              D      +G   E+       E   I +      +  +  DK RS+Q +   GVPV 
Sbjct: 77  SGCDAVHPG-YGFLAENSEFVKACEAAGITFIGPNTESMYILGDKTRSRQKMIEAGVPVV 135

Query: 109 PSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS----- 159
           P       +++        +  P + K   GG   G+ +I   +        +       
Sbjct: 136 PGTKDPVESLEEALKVAEEVGYPIMFKASAGGGGKGMRLINSAEEFKEVYDLAKGEALSA 195

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
           +      + +  V    +   +  D   +       +        +             I
Sbjct: 196 FGDDRMYIEKAIVKPRHVEIQIAVDKHGNAVHFYERECSIQ----RRHQKVIEESPSMAI 251

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             ++  ++   A  A +A     +   +FL D      ++LE+N +
Sbjct: 252 NDEVRHKMGEAAIKAVKAANYDSVGTVEFLVD-KDMNFYFLEVNTR 296


>gi|323358082|ref|YP_004224478.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
 gi|323274453|dbj|BAJ74598.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Microbacterium
           testaceum StLB037]
          Length = 684

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 21/142 (14%), Positives = 51/142 (35%), Gaps = 2/142 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IKP  GG   G+ V+++  ++P  +  +             +++    +   +   
Sbjct: 153 YPLLIKPSAGGGGKGMHVVEESAALPEAISAARREAAASFGDDTLFLERYVRSPRHIEVQ 212

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCRGIS 244
            L      V         L+          P+ +   +    + R A    +++  RG  
Sbjct: 213 VLADAHGGVVHLGERECSLQRRHQKVIEEAPSPLLDAETRARIGRAACETARSVDYRGAG 272

Query: 245 RSDFLFDPLS-RKVFWLEINVQ 265
             +F+    +  + F++E+N +
Sbjct: 273 TVEFIVSAEAPGEFFFMEMNTR 294


>gi|297667979|ref|XP_002812234.1| PREDICTED: CAD protein-like [Pongo abelii]
          Length = 2225

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/303 (11%), Positives = 84/303 (27%), Gaps = 36/303 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQAQAAAERLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
            A    Q +G  G     +  +P S + + +E+N +  ++  S     +   GY    + 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSS--ALASKATGYPLAYVA 706

Query: 290 LWM 292
             +
Sbjct: 707 AKL 709


>gi|258543141|ref|YP_003188574.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256634219|dbj|BAI00195.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01]
 gi|256637279|dbj|BAI03248.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-03]
 gi|256640331|dbj|BAI06293.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-07]
 gi|256643388|dbj|BAI09343.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-22]
 gi|256646443|dbj|BAI12391.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-26]
 gi|256649496|dbj|BAI15437.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-32]
 gi|256652482|dbj|BAI18416.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-01-42C]
 gi|256655540|dbj|BAI21467.1| acetyl-CoA carboxylase biotin carboxylase subunit [Acetobacter
           pasteurianus IFO 3283-12]
          Length = 465

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/220 (16%), Positives = 73/220 (33%), Gaps = 15/220 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+      +E   I +      +  L  DK+ +KQ + + GVP  P    
Sbjct: 82  AIHPGYGFLSENSDFAEAVEKAGITFIGPTPESIRLMGDKITAKQTMQASGVPCVPGSDG 141

Query: 114 NRFTMDSQHL-----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL---LQSSSWNHGDQ 165
                ++  L     +  P ++K   GG   G+ V+     +   +    + +    G+ 
Sbjct: 142 PLPEDENAILDLANAVGFPVIVKASGGGGGRGMRVVWSSDELIKAVALTRKEAQQAFGNP 201

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            L  +          +        T + +          +          P  IP ++  
Sbjct: 202 TLYLERFMQKPRHIEIQVLCDTHGTALWL--GARDCSLQRRHQKVLEEAPPPGIPPELIA 259

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           E+      A + IG RG    +FL+        ++E+N +
Sbjct: 260 EIGARCAQACRNIGYRGAGTFEFLY--EDGIFAFIEMNTR 297


>gi|229591325|ref|YP_002873444.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens SBW25]
 gi|229363191|emb|CAY50252.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pseudomonas
           fluorescens SBW25]
          Length = 641

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +           +  V+   L   
Sbjct: 150 CERIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREALSSFGNGQMLVEKYLLKPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA    ++  K +   A  A QAIG
Sbjct: 210 HVEIQVFADQHGHCLYLNERDCSIQRRHQKVVEEAPAPGLSVEQRKAMGEAAVRAAQAIG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 270 YVGAGTVEFLLDAR-GEFFFMEMNTR 294


>gi|262202268|ref|YP_003273476.1| carbamoyl-phosphate synthase large subunit [Gordonia bronchialis
           DSM 43247]
 gi|262085615|gb|ACY21583.1| carbamoyl-phosphate synthase, large subunit [Gordonia bronchialis
           DSM 43247]
          Length = 1110

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 45/318 (14%), Positives = 90/318 (28%), Gaps = 45/318 (14%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHL-----------------KP 51
           SG      L+  G +VS +         D + +    +  +                   
Sbjct: 29  SGTQACRVLKAEGLRVSLVNSNPATIMTDPEFADATYIEPITAEYVEKVIEAERDAGHPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  V       LE   I    +   A     D+   K +V+  G   
Sbjct: 89  DAVLATLGGQTALNTAVALHDRGSLEKYGIELIGADFDAIQRGEDRQMFKDIVAKVGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +           +  P V++P      LG  +   D  +        + +    
Sbjct: 149 ARSRVCHTMDEVRDTVAELGFPVVVRPSFTMGGLGSGMAYDDADLERIAGGGLAASPTAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   + D   +     +     +      +          +   
Sbjct: 209 VLIEESILGWKEYELELMRDNRDNVVVVCSIENVDPVGVHTGDSVTVAPAMTLTDREYQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS---------IFPE 276
                  +  +     G     F  DP   ++  +E+N  P ++  S            +
Sbjct: 269 MRDLSIAILREVGVDTGGCNIQFAQDPRDGRLVVIEMN--PRVSRSSALASKATGFPIAK 326

Query: 277 MAA--YAGYSFRELLLWM 292
           +AA    GYS  E++  +
Sbjct: 327 IAAKLAIGYSLDEIVNDI 344


>gi|157145377|ref|YP_001452696.1| phosphoribosylglycinamide formyltransferase 2 [Citrobacter koseri
           ATCC BAA-895]
 gi|157082582|gb|ABV12260.1| hypothetical protein CKO_01117 [Citrobacter koseri ATCC BAA-895]
          Length = 392

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/273 (12%), Positives = 77/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGVEVIAVDRYPDAPAMHVAHRSHVINMLDGEALRRVVEREKPHFIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +      L  +P   +  L       +  + + ++                 
Sbjct: 84  EAIATDMLVELEQEGLNVVPCARATQLTMNREGIRRLAAEELALPT-SSFRFADSEERFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           ++   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 EAVAEIGFPCIVKPVMSSSGKGQSFIRSADQLSQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++        Q +A     A+
Sbjct: 201 DFEITLLTVSAIDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALARAQEIARKVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVVFSEVSPRPHDTGM 289


>gi|118579764|ref|YP_901014.1| pyruvate carboxylase [Pelobacter propionicus DSM 2379]
 gi|118502474|gb|ABK98956.1| pyruvate carboxylase [Pelobacter propionicus DSM 2379]
          Length = 1148

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/288 (14%), Positives = 85/288 (29%), Gaps = 41/288 (14%)

Query: 13  EVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN---------------- 56
           E+S+        A  + G ++  I       L L   K D A+                 
Sbjct: 16  EISVR----IFRACAELGIRMVAIY-SEEDKLSLHRYKADEAYLIGKGKAPVEAYLGIDE 70

Query: 57  -----------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS 102
                       +H   G   E+       E   I +            DK+  +++ ++
Sbjct: 71  IIALALKVGVEAIHPGYGFLSENAEFAEKCEANGIVFIGPTGEMQRALGDKVAGRKMATA 130

Query: 103 CGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS 158
            GV V P     I      +        P ++K   GG   G+ V    + +   L+ + 
Sbjct: 131 AGVNVVPGTEDPIEREEDALKFAKQYGYPIIVKAAAGGGGRGMRVAHNQKELLEGLVAAG 190

Query: 159 SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA- 217
           S           +++        +    L      +         ++          P+ 
Sbjct: 191 SEAKAAFGNAAVFLERYLENPKHIEVQVLGDNYGNLVHFFERDCSVQRRHQKVVEFAPSL 250

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            I  ++ +E+   A    + +  R     +FL D    + +++E+N +
Sbjct: 251 CITPELREELCDAALKIARQVNYRNAGTVEFLVDQQ-GRYYFMEMNPR 297


>gi|110638024|ref|YP_678231.1| biotin carboxylase subunit of acetyl CoA carboxylase [Cytophaga
           hutchinsonii ATCC 33406]
 gi|110280705|gb|ABG58891.1| biotin carboxylase, subunit of acetyl CoA carboxylase [Cytophaga
           hutchinsonii ATCC 33406]
          Length = 448

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + +  P ++K   GG   G+ +I+ D+      + +       + +    L +   +  
Sbjct: 148 ANKVKYPVILKATAGGGGRGMRIIRSDREFEKAWVDAKQEAGASFGNDGLYLEKFIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD    V  ++           +             I   +  ++   A    
Sbjct: 208 HIEVQLLGDKFGTVVHLSERDCSIQ----RRHQKLIEETPSPIITERLRTKMGEAAVKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++I   G    +FL D      +++E+N +
Sbjct: 264 KSIKYEGAGTIEFLVDKH-GDFYFMEMNTR 292


>gi|330001201|ref|ZP_08303923.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella sp. MS
           92-3]
 gi|328537771|gb|EGF63972.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella sp. MS
           92-3]
          Length = 395

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 27  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 86

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 87  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SRYRFADSEEGFR 145

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 146 AAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 203

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 204 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQAIAREVVLAL 261

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 262 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 292


>gi|307298113|ref|ZP_07577917.1| protein of unknown function DUF201 [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916199|gb|EFN46582.1| protein of unknown function DUF201 [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 402

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 36/259 (13%), Positives = 79/259 (30%), Gaps = 30/259 (11%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            SV   +  LK D+        F     +        +           L  DK      
Sbjct: 62  ESVIEKIEELKIDVLCPTFEEGFVFSKYIGR--LEGRVNVLVPSYDHITLLHDKYSMTTY 119

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
             S G+ V  + L+  F+++       P +IKP    S+ GI  +               
Sbjct: 120 ARSLGISVPKTALLKDFSLEG---CEFPVIIKPRNQRSAEGIFKVNSIGEFEK----RCR 172

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI 219
               D+ L++++ +  ++    +      +  +       Y       +   +       
Sbjct: 173 NLEEDRYLVQEWKEPYQICTTGLAHNGRLIGNVIYHNIREYPESGGIGTCRVSIDC---- 228

Query: 220 PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV--QPGMTPVSIFPEM 277
                ++           +   G    DFL D ++ + + +++N    PG+        +
Sbjct: 229 -----EKALGEVKKIVSDLNYSGFISMDFLHDRINGEYYLVDVNPRMSPGL-------LI 276

Query: 278 AAYAGYSFRELLLWMVEDA 296
           A  +G    +++   +E A
Sbjct: 277 AYNSGV---DMVKAYLELA 292


>gi|255325052|ref|ZP_05366158.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|255297617|gb|EET76928.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           tuberculostearicum SK141]
          Length = 1113

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 94/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLK-----P 51
           SG      L++ G +V+ ++ +                       +  +L   +      
Sbjct: 29  SGTQACRVLKEEGLRVTLVNSNPATIMTDPEFADHTYVEPIEPEYIEKILVKEREEGNPI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q IL+   I    + I A     D+ + K +V+S G   
Sbjct: 89  DAVLATLGGQTALNAAVQLDRQGILDKYGIELIGADIDAIERGEDRQKFKDIVASIGGES 148

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +   ++ +        + +    
Sbjct: 149 ARSAVCHNMDEVHETVDKLGLPVVVRPSFTMGGLGSGLAFNNEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +  K
Sbjct: 209 VLIEESILGWKEYELELMRDGDDNVVVVASIENVDALGVHTGDSVTVAPALTLTDREFQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDLGIAIIREVGVDTGGCNIQFAVNPEDGRIIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331



 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 65/168 (38%), Gaps = 10/168 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
              I  P +++P       G+ ++  ++++   + +++  +    +L+++++D  IE+  
Sbjct: 723 ASSIGYPVLVRPSYVLGGRGMEIVYDEKALEDYIERATELSPDHPVLVDRFLDSAIEIDV 782

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           +S  + P  +  +  ++V+    L  + IG
Sbjct: 783 DALCDGNEVYLGGVMEHIEEAGIHSG---DSSCALPPMTLGPEDIEKVRTSTRLLAEGIG 839

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            +G+    F        ++ +E N +   T     P ++   G    +
Sbjct: 840 VKGLMNVQFAL--KDDILYVIEANPRASRT----VPFVSKATGVPLAK 881


>gi|152970911|ref|YP_001336020.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae subsp. pneumoniae MGH 78578]
 gi|150955760|gb|ABR77790.1| 5'-phosphoribosylglycinamide transformylase [Klebsiella pneumoniae
           subsp. pneumoniae MGH 78578]
          Length = 392

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SRYRFADSEEGFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 AAVTEIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQAIAREVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|73966730|ref|XP_548250.2| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 1 [Canis familiaris]
          Length = 2323

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|73966726|ref|XP_867566.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 8 [Canis familiaris]
          Length = 2333

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 275 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 334

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 335 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 391

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 392 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 449

Query: 264 VQ 265
            +
Sbjct: 450 PR 451


>gi|73966732|ref|XP_867594.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 10 [Canis familiaris]
          Length = 2323

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|73966728|ref|XP_867576.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 9 [Canis familiaris]
          Length = 2323

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|116492628|ref|YP_804363.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Pediococcus pentosaceus ATCC
           25745]
 gi|116102778|gb|ABJ67921.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Pediococcus pentosaceus ATCC 25745]
          Length = 455

 Score = 45.2 bits (105), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/212 (15%), Positives = 68/212 (32%), Gaps = 6/212 (2%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVN---- 114
           +G   E+     + +   + +         L  +K R+++ + S  VPV P         
Sbjct: 82  YGFLSENAEFARLCKESNLVFIGPHYKTIDLMGNKSRARETMISANVPVIPGSNGMVRDL 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              M     I  P ++K   GG   GI  I   + +     ++           + Y++ 
Sbjct: 142 ENAMVVAKQIGYPIMLKAADGGGGKGIRRINSPEDLKKAYQEAKREAETSFGNSDLYIEK 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFL 233
           I      +    +                L+ ++       P   I     + +  +   
Sbjct: 202 IIENAKHIEMQVIADQFGHYVFLPERDCSLQRNNQKVIEETPCATISHSERESLGDIVVR 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A +AI        +FL D  +   +++E+N +
Sbjct: 262 AAKAINYYNTGTIEFLMDE-NHNFYFMEMNTR 292


>gi|330817564|ref|YP_004361269.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           gladioli BSR3]
 gi|327369957|gb|AEA61313.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           gladioli BSR3]
          Length = 483

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/145 (13%), Positives = 44/145 (30%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +  +L  +             Y++       
Sbjct: 168 AERIGYPIMIKAAAGGGGRGIRVAHDAAQLDAELPLAQREAQAAFGNGGVYLERFIARAR 227

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L      V   +      +             +  ++ + +   A    + +  
Sbjct: 228 HIEVQVLGDGREVVHLFERECSLQRRRQKIMEEAPSPSLTPELRQALCASATRLARQVAY 287

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           R     ++LFD    + +++E+N +
Sbjct: 288 RSAGTLEYLFDETRGEFYFIEMNTR 312


>gi|307299595|ref|ZP_07579392.1| RimK domain protein ATP-grasp [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306914731|gb|EFN45120.1| RimK domain protein ATP-grasp [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 383

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/254 (16%), Positives = 76/254 (29%), Gaps = 9/254 (3%)

Query: 26  LEDAGFKVSQIDVDRSVGLVLAHLKPDLAF---NVLHGNFGEDGLVQAILELLEIPYTHS 82
           L++ GF     +  RS   + A    DL     N       E      ILE         
Sbjct: 67  LKNNGFDFEIFEYHRSD-WLEAAKNFDLIIWSPNSGPAELDEIKRKIYILEKKLGKKCFP 125

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLISPPYVIKPLKGGSSLG 140
                 L  DK+ S   +   G+PV  +            +     P V K   G SS  
Sbjct: 126 DYETLLLCDDKVMSTYFLKMNGLPVADTFISNDYHEIEQMKTKFLFPLVSKRFHGASSRE 185

Query: 141 IIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFY 200
           + +IK    +     + +   +G +     +     +    + +       + V  +   
Sbjct: 186 VDLIKNPAQLSR-FSRRAFSFYGKKCSNAYFRQKNYVYLQRLVNGDGLDVRVNVAGNVVT 244

Query: 201 SYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWL 260
            Y  K    +        +  +          L    +  + +   D + D    K + +
Sbjct: 245 GYFRKPKRNDFRASGSGIVIKEDLPLEAVEIALKTYGLIGKAMLGVDMMRDRE-GKFWII 303

Query: 261 EINVQPG-MTPVSI 273
           EI+   G +TP+ +
Sbjct: 304 EISPFIGVITPIQM 317


>gi|270290338|ref|ZP_06196563.1| biotin carboxylase [Pediococcus acidilactici 7_4]
 gi|270281119|gb|EFA26952.1| biotin carboxylase [Pediococcus acidilactici 7_4]
          Length = 455

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/280 (13%), Positives = 76/280 (27%), Gaps = 34/280 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLA--------------FN-------- 56
                 +L +   +   +        +   L  +                FN        
Sbjct: 14  AVQIIRSLHELDIQAVAVYSTADENSLFVRLADEAVCIGGPQPAESYLNTFNIVNAAILT 73

Query: 57  ---VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+     + E   + +         L  +K R+++ + S  VPV P 
Sbjct: 74  GCDAIHPGYGFLSENAEFARLCEESNLKFIGPSYQTIELMGNKSRARETMISANVPVIPG 133

Query: 111 ILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
                      M     I  P ++K   GG   GI  I     +      +         
Sbjct: 134 SNGMVRDLENAMVVAEQIGYPVMLKAADGGGGKGIRRINSPDELKKAYQAAQREAQTSFG 193

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYK 225
             + Y++ I      +    +                L+ ++       P   I     +
Sbjct: 194 NADLYLEKIIENAKHIEMQVIADQYGHYVFLPERDCSLQRTNQKVIEETPCAVISHTERE 253

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  +   A +AI        +FL D      +++E+N +
Sbjct: 254 TLGEIVVRAAKAIKYYNTGTIEFLMD-QDHHFYFMEMNTR 292


>gi|229918518|ref|YP_002887164.1| pyruvate carboxylase [Exiguobacterium sp. AT1b]
 gi|229469947|gb|ACQ71719.1| pyruvate carboxylase [Exiguobacterium sp. AT1b]
          Length = 1144

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 34/253 (13%), Positives = 75/253 (29%), Gaps = 25/253 (9%)

Query: 32  KVSQIDVDR----------SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   I VD+           V  +      D      +G   E+  +        I +  
Sbjct: 49  EAYLIGVDKKPIDAYLDIEDVIRIAKESGSDAIHPG-YGFLSENIELARRCREEGIIFVG 107

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGS 137
                     DK+R++Q   + G+PV P     +          +    P ++K   GG 
Sbjct: 108 PHESHLHAFGDKVRARQSAIAAGLPVIPGSDGPLTSYEDAEAFANEHGFPLMVKASMGGG 167

Query: 138 SLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEI 192
             G+ VI+ +  +   + +       ++   +  + +       +   ++GD    +  +
Sbjct: 168 GRGMRVIRTEAEMKDLIERAKSEAKQAFGSDEVYIEKLVERPKHIEVQILGDEHGHIIHL 227

Query: 193 AVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDP 252
                       K   +     L       I       A    + +G       +FL   
Sbjct: 228 FERDCSVQRRHQKVVEVAPCVTLSDASRQAICD----AAVQLMRHVGYVNAGTVEFLVTE 283

Query: 253 LSRKVFWLEINVQ 265
                +++E+N +
Sbjct: 284 -DESFYFIEVNPR 295


>gi|269127904|ref|YP_003301274.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
 gi|268312862|gb|ACY99236.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Thermomonospora curvata DSM 43183]
          Length = 444

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 78/250 (31%), Gaps = 19/250 (7%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNV--------LH---GNFGEDGLVQAILELLEIPYT 80
           +   I      G  L     D             +H   G   E       +    + + 
Sbjct: 47  EAILIGPAHPAGSYLDA---DRVLEAARRTNAQAIHPGYGFLAESAEFAERVTDQGLVWI 103

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGG 136
               LA A   DK+ ++ ++   GVPV   +        +       I  P ++K   GG
Sbjct: 104 GPPPLAIARMGDKINARNLMIEAGVPVAAGVWEPVPDAATALAEAERIGYPVMVKAAGGG 163

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             +G+   + +  +      + S         +  ++        +    L + +  V  
Sbjct: 164 GGIGMGAARDEAELVKVYASARSSAERFFRNPDILLERYVERARHVEVQILGLADGTVVA 223

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++          P+      +   + + A  A +A+G RG    +FL D  S 
Sbjct: 224 LGERDCSVQRRHQKIVEETPSPGVDAALRARMTQAAVRAGEAVGYRGAGTVEFLLDVDSG 283

Query: 256 KVFWLEINVQ 265
           +  +LE+N +
Sbjct: 284 EFVFLEMNTR 293


>gi|156057445|ref|XP_001594646.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980]
 gi|154702239|gb|EDO01978.1| conserved hypothetical protein [Sclerotinia sclerotiorum 1980
           UF-70]
          Length = 612

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   +PD  F 
Sbjct: 111 SGSQALKALKEAGVASVLINPNIATIQTAHVLTDEVYYLPVTPEYVTYVIERERPDGIFL 170

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D         +  +    +
Sbjct: 171 TFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSEDRDLFAKALGEINIPIAQSVA 230

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG      ++ +    + S S     Q+L+E+
Sbjct: 231 VSTVDEALEAAKGIGYPIIVRAAYALGGLGSGFANNEEELRN--MASRSLTLSPQILVEK 288

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 289 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 347

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 348 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 399


>gi|154324146|ref|XP_001561387.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
 gi|150842701|gb|EDN17894.1| conserved hypothetical protein [Botryotinia fuckeliana B05.10]
          Length = 464

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/296 (12%), Positives = 87/296 (29%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   +PD  F 
Sbjct: 111 SGSQALKALKEAGVASVLINPNIATIQTAHVLTDEVYYLPVTPEYVTYVIERERPDGIFL 170

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +       +       +++  T    L ++   D         +  +    +
Sbjct: 171 TFGGQTALNLGVQMERMGIFERYGVKVLGTSIKTLETSEDRDLFAKALGEINIPIAQSVA 230

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P +++       LG      ++ +    + S S     Q+L+E+
Sbjct: 231 VSTVDEALEAAKGIGYPIIVRAAYALGGLGSGFANNEEELRN--MASRSLTLSPQILVEK 288

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +  + Y  ++  
Sbjct: 289 SLKGW-KEVEYEVVRDASNNCITVCNMENFDPLGIHTGDSIVVAPSQTLSDEEYHMLRSA 347

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 348 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 399


>gi|117923976|ref|YP_864593.1| acetyl-CoA carboxylase, biotin carboxylase [Magnetococcus sp. MC-1]
 gi|117607732|gb|ABK43187.1| acetyl-CoA carboxylase, biotin carboxylase [Magnetococcus sp. MC-1]
          Length = 445

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/216 (14%), Positives = 72/216 (33%), Gaps = 15/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     I++   + +         L  +K+++++ + + GVPV       +   
Sbjct: 82  YGFLSENPEFAEIVKASGLTFIGPEPEVIRLMGNKVQARKTMIAAGVPVVQGSEGAVNSE 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSWNHGDQLLIE 169
              +     I  P +IK + GG   G+ V+  +  +              + +    + +
Sbjct: 142 EDALRIAREIGFPVIIKAVGGGGGRGMKVVHAEAGLIRAYTVARNEARQFFRNDAIYIEK 201

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   +M D   +   +            +             +  +    +  
Sbjct: 202 YLEAPRHVEIQIMCDRHGNAVHLGERDCSLQ----RRHQKILEEAPSPAVSPEERHRLGT 257

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           LA  A  A+G  G    +FL+D      ++LE+N +
Sbjct: 258 LAAKAAHAVGYEGAGTFEFLYDK--GNFYFLEMNTR 291


>gi|113460713|ref|YP_718780.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           somnus 129PT]
 gi|112822756|gb|ABI24845.1| acetyl-CoA carboxylase carboxyltransferase subunit alpha
           [Haemophilus somnus 129PT]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GTDAIHPGYGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V++ ++S+   +  + +      
Sbjct: 134 SDGPLGADINKNKEIAKRIGYPIIIKASGGGGGRGMRVVRDEKSLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L  T             ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQKVVEEAPAPGISEETR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RDIGTRCANACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|170720994|ref|YP_001748682.1| carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida W619]
 gi|169758997|gb|ACA72313.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida W619]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEEESQLAEALASAQREAQSSFGDARMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|322705620|gb|EFY97204.1| carbamoyl-phosphate synthase arginine-specific large chain
           [Metarhizium anisopliae ARSEF 23]
          Length = 1290

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 41/296 (13%), Positives = 93/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++AG     I+ +                       V  V+   KPD  F 
Sbjct: 235 SGSQALKALKEAGVASVLINPNIATIQTNHSLADEVYYLPVTPEYVSYVIEKEKPDGIFL 294

Query: 57  VLHGNFGED----GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
              G    +       Q + E   +    + +    +S D+    + +    +P+  SI 
Sbjct: 295 SFGGQTALNLGVQMQRQGLFEKYGVKVLGTSVRTLEVSEDRDLFAKALEEINIPIAKSIA 354

Query: 113 --VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+   +  P +++       LG      ++ +    + + S     Q+L+E+
Sbjct: 355 VGTVDEALDAAEKVGYPIIVRAAYALGGLGSGFANNEEELRN--MAARSLTLSPQILVEK 412

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +   + +         +F      ++  +        +  + Y  ++  
Sbjct: 413 SLKGWKELEYEVVRDANNNCITVCNMENFDP-LGIHTGDSIVVAPSQTLSDEEYHMLRSA 471

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    + +G  G     +   P       +E+N +  ++  S     +   GY   
Sbjct: 472 AIKIVRHLGVVGECNVQYALQPDGLDYRVIEVNAR--LSRSS--ALASKATGYPLA 523


>gi|319783853|ref|YP_004143329.1| carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
 gi|317169741|gb|ADV13279.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Mesorhizobium ciceri biovar biserrulae WSM1271]
          Length = 670

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/187 (10%), Positives = 54/187 (28%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +   +  +     ++ S           +++   +   
Sbjct: 148 AGEIGYPVMIKASAGGGGKGMRIAWSEAEVRDGFDRARSEAKSSFGDDRLFIEKFVVDPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L                ++  +       P+       ++     +    +A+ 
Sbjct: 208 HIEIQVLADAHGNALYLGERECSIQRRNQKVAEEAPSPFLDAATRKAMGEQSVALAKAVD 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+ D      ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFIVDKDKN-FYFLEMNTR----------LQVEHPVTELITGI---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|301311252|ref|ZP_07217180.1| carbamoyl-phosphate synthase small chain [Bacteroides sp. 20_3]
 gi|300830826|gb|EFK61468.1| carbamoyl-phosphate synthase small chain [Bacteroides sp. 20_3]
          Length = 369

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 32/259 (12%), Positives = 85/259 (32%), Gaps = 12/259 (4%)

Query: 31  FKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALS 90
           F +  I  +  +   +   K D+ ++   G+     +   + E L +P+  S   A+  +
Sbjct: 47  FNLINILDEEKLATFIVDNKIDVVYST--GSDLAMPVACRLSERLGLPHFVSSYAANVCN 104

Query: 91  MDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
              +  +++     +    +I         +  I  P ++KP       GI +I+     
Sbjct: 105 HKNLMRERLT----LECEGNIPFQVLDSIDKIAIQYPAILKPSDAQGQRGIFLIRSQSEF 160

Query: 151 PLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
                    ++   ++++E+Y++G E++        +    I   +  +  Y        
Sbjct: 161 ESHFQDVVKYSREGKVIVEKYIEGPEVSVNGYMVNGVMRFLIVSDRDTWPEYTGLIHKHI 220

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTP 270
                         K +   A      +         F    ++   + +E+   P +  
Sbjct: 221 VPSKAVCNTANSKIKRIVEDACNRIGILNGPVY----FQMKVMNGHPYIIEM--TPRLDG 274

Query: 271 VSIFPEMAAYAGYSFRELL 289
             ++  +A   G +  +L+
Sbjct: 275 CHMWNLLARSTGVNLMKLV 293


>gi|298387550|ref|ZP_06997102.1| ATP-grasp domain protein [Bacteroides sp. 1_1_14]
 gi|298259757|gb|EFI02629.1| ATP-grasp domain protein [Bacteroides sp. 1_1_14]
          Length = 328

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 31/258 (12%), Positives = 78/258 (30%), Gaps = 11/258 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
            ++   + + K D    +           + I+E +           + + +DK    + 
Sbjct: 56  ETLISFIDNQKIDYVLTLSDVEVVILSKNKDIIESIGCTLIGLPYEKALICLDKYLFYEY 115

Query: 100 VSSCGVPVCPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           + + G+    + +             I  P + K   G  S G+ ++  D  + +    +
Sbjct: 116 LKANGLATPLTYININKLKWDLSLGKIIYPIIAKDRWGMGSRGLSILHSDDELDMYYNIN 175

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
           +         +     GI     +  +            +  Y   +    +        
Sbjct: 176 NVSFPSFLGEVRDKKRGIIFQELLSSNEYGMDI--INDLNGNYQLCVIKKKIEMRGGETD 233

Query: 218 KIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
              +  + E + LA         RG    DF+   +  +++ +++N + G     +F E 
Sbjct: 234 VAEIVSFPEAENLAQKLSILFQHRGNMDCDFI--EIRGELYVIDMNPRFG--GGYMFTEA 289

Query: 278 AAYAGYSFRELLLWMVED 295
           A   G +  +L    +  
Sbjct: 290 A---GINVPKLFSEWINH 304


>gi|253578543|ref|ZP_04855815.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251850861|gb|EES78819.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 37/217 (17%), Positives = 70/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+     + E   + +        +   +K  +K  +    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFVEMCEKCNVAFIGPSAEVISRMGNKSEAKNTMRKAKVPVVPGTKE 136

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
             +T++        I  P +IK   GG   G+ V   +Q        +   +        
Sbjct: 137 PVYTVEQALEAVKEIGFPVMIKASAGGGGKGMRVAGNEQEFAKLFETAQQESVHSFSDNT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
            Y++        +    L      V         ++          P   I  D+ K++ 
Sbjct: 197 MYLERFVENPRHVEVQILADKYGNVVHLGERDCSVQRRHQKMIEESPCIAISDDLRKKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A G       +FL D  S + +++E+N +
Sbjct: 257 ETAVRAAKAAGYESAGTIEFLLD-QSGEFYFMEMNTR 292


>gi|195581408|ref|XP_002080526.1| GD10202 [Drosophila simulans]
 gi|194192535|gb|EDX06111.1| GD10202 [Drosophila simulans]
          Length = 975

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
           + I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   
Sbjct: 437 NKIGFPVMIKASEGGGGKGIRRVDTTEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQ 496

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +   +            +                ++++++++ A    + +G 
Sbjct: 497 LLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGY 552

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+DP   + F+LE+N +
Sbjct: 553 VSAGTVEYLYDPE-GRYFFLELNPR 576



 Score = 44.1 bits (102), Expect = 0.025,   Method: Composition-based stats.
 Identities = 22/141 (15%), Positives = 52/141 (36%), Gaps = 6/141 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGVMGD 184
            P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   ++ D
Sbjct: 617 FPVMIKASEGGGGKGIRRVDTTEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQLLAD 676

Query: 185 ASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGIS 244
              +   +            +                ++++++++ A    + +G     
Sbjct: 677 QYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGYVSAG 732

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             ++L+DP   + F+LE+N +
Sbjct: 733 TVEYLYDPE-GRYFFLELNPR 752


>gi|195332315|ref|XP_002032844.1| GM20735 [Drosophila sechellia]
 gi|194124814|gb|EDW46857.1| GM20735 [Drosophila sechellia]
          Length = 2482

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
           + I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   
Sbjct: 439 NKIGFPVMIKASEGGGGKGIRRVDTTEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQ 498

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +   +            +                ++++++++ A    + +G 
Sbjct: 499 LLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGY 554

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+DP   + F+LE+N +
Sbjct: 555 VSAGTVEYLYDPE-GRYFFLELNPR 578


>gi|146299502|ref|YP_001194093.1| phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           johnsoniae UW101]
 gi|146153920|gb|ABQ04774.1| phosphoribosylglycinamide formyltransferase 2 [Flavobacterium
           johnsoniae UW101]
          Length = 385

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/244 (15%), Positives = 77/244 (31%), Gaps = 13/244 (5%)

Query: 30  GFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           GF+V  +    ++  ++A  +PD     +      +       + + +  +      +  
Sbjct: 43  GFEVINMLDGEALDRIVAKHQPDFIVPEIE-AIRTERFYDYEKQGITVVPSAKAANFTMN 101

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                         +   I  P V+KPL   S  G   IK +  
Sbjct: 102 RKAIRDLAAKELGLRTAKYEYATSAEELQKAVLEIGIPCVVKPLMSSSGKGQSTIKTESD 161

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           I      + + + GD  ++++E +VD       +    + + T    P            
Sbjct: 162 IEKAWQYAVAGSRGDVIEVIVEAFVDFHSEITLLTITQNDNPTLFCAPIGHRQE-----R 216

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
                   PA +      E Q +A    +A+G  G+   +F        V++ E++ +P 
Sbjct: 217 GDYQESWQPALVSEKDLYEAQDMAEKITEALGGAGLFGVEFFLTKEG--VYFSELSPRPH 274

Query: 267 --GM 268
             GM
Sbjct: 275 DTGM 278


>gi|187234451|gb|ACD01464.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Cechenena subangustata]
          Length = 975

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + + S    V    +
Sbjct: 435 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKICSIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 495 VMSVDEALAAAAQIGYPVMARSAFSLGGLGSGFANNEEEL--KALAHQALSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|291241857|ref|XP_002740827.1| PREDICTED: carbamyl phosphate synthetase III-like [Saccoglossus
           kowalevskii]
          Length = 1359

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/320 (10%), Positives = 96/320 (30%), Gaps = 47/320 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD------------------------RSVGLVLAHLKPDL 53
           SG     AL++ G +   ++ +                          V  V+   KP+ 
Sbjct: 419 SGSQAIKALKEEGMQTILMNPNIASVQTNAHGEKQADNVYFLPVTPEFVTDVIKREKPNG 478

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL-------SMDKMRSKQVVSSCGVP 106
              +  G          + +   +      +L + +         +    K    +  + 
Sbjct: 479 IL-LSMGGQTALNCGVELYKQGILQEYGVQVLGTPITSIMDTEDRNLFSDKLHEINENIA 537

Query: 107 VCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              ++   +  +++   I  P +++       LG  +    + +   +  + +     Q+
Sbjct: 538 PSIAVESVKDALNAAVEIGYPVMVRAAYALGGLGSGLANNREELNKIVTNAFAMT--TQV 595

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LIE+ + G                 + V   + +     ++  +        +  + Y  
Sbjct: 596 LIEKSLLGW-KEVEYEVVRDAADNCVTVCNMENFDPLGIHTGDSIVVAPSQTLSNEEYHM 654

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A    + +G  G     +   P S +   +E+N +  ++  S     +   GY   
Sbjct: 655 LRETAIKVVRHLGIIGECNIQYALHPKSLEYCIIEVNAR--LSRSS--ALASKATGYPLA 710

Query: 287 ELLLWM--------VEDASC 298
            +   +        +E+A+ 
Sbjct: 711 FIAAKLGLGVLLPDIENATT 730


>gi|225574638|ref|ZP_03783248.1| hypothetical protein RUMHYD_02715 [Blautia hydrogenotrophica DSM
           10507]
 gi|225038149|gb|EEG48395.1| hypothetical protein RUMHYD_02715 [Blautia hydrogenotrophica DSM
           10507]
          Length = 446

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 33/249 (13%), Positives = 74/249 (29%), Gaps = 16/249 (6%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+       +   + +            +K  +K+ +   G+PV      
Sbjct: 77  AIHPGFGFLSENDQFAEKCQDWGVVFVGPSSELIRKMGNKSVAKETMRQAGIPVIEGSKE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +  N+  +     I  P ++K   GG   G+ ++ +          +            
Sbjct: 137 PVFDNKEALRQAEKIGFPVMVKAAFGGGGKGMRIVSEKSEFESLFRLAQQEAVRSFGDST 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    +  +   V         ++          P  +   +    + 
Sbjct: 197 MYLEKYIQNPRHVEVQIVADSFGNVICLGERDCSVQRRHQKMIEESPCTVLEDETRLRLH 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFREL 288
             A  A +A+G       +FL D      +++E+N +         P   A  G    +L
Sbjct: 257 EAAVEAAKAVGYESAGTVEFLCD-SDGNFYFMEMNTR-IQVEH---PVSEAVTGV---DL 308

Query: 289 LLWMVEDAS 297
           +   +  AS
Sbjct: 309 IREQIRVAS 317


>gi|190894037|ref|YP_001984331.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
 gi|190699698|gb|ACE93781.1| putative D-alanine-D-alanine ligase protein [Rhizobium etli CIAT
           652]
          Length = 397

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 43/150 (28%), Positives = 71/150 (47%), Gaps = 4/150 (2%)

Query: 2   AVLMGGISSEREVSLSSGKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGN 61
            +L GG S+ER  SL +       L++    V  ++ +    L+ A L+ D   +V++G 
Sbjct: 216 VLLAGGSSTERAASLETKDVLLPHLQNLCRSVEFVEPNDVEQLLRAVLQCDFVLSVVYGA 275

Query: 62  FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQ 121
            GEDG +Q  L++L +PY+    L SA+ M+K     ++   G PV    LV        
Sbjct: 276 GGEDGTMQGFLDILRVPYSGPSTLPSAIGMNKDIFVSLLRDWGYPVPRGRLVAALGDPRS 335

Query: 122 HLISP----PYVIKPLKGGSSLGIIVIKKD 147
             +        V+KP+  GSS+GI ++   
Sbjct: 336 WPLELQQSQVLVLKPIGEGSSIGIKMLDGH 365


>gi|154274113|ref|XP_001537908.1| hypothetical protein HCAG_07330 [Ajellomyces capsulatus NAm1]
 gi|150415516|gb|EDN10869.1| hypothetical protein HCAG_07330 [Ajellomyces capsulatus NAm1]
          Length = 892

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 20/164 (12%), Positives = 56/164 (34%), Gaps = 5/164 (3%)

Query: 103 CGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH 162
             +         +  ++    I  P ++K  +GG   GI  +++++        ++S   
Sbjct: 112 PHIYDKGCTHSPQEGLEKALAIGFPVMVKASEGGGGKGIRKVEREEDFINMYNAAASEIP 171

Query: 163 GDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL 221
           G  + I +   +   L   ++ D   +   +            +                
Sbjct: 172 GSPIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTIAKP 227

Query: 222 DIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + ++ ++R A    + +G       ++L+     K ++LE+N +
Sbjct: 228 ETFQAMERAAVRLGKLVGYVSAGTVEYLYSHAEDKFYFLELNPR 271


>gi|104782432|ref|YP_608930.1| methylcrotonoyl-CoA carboxylase subunit alpha [Pseudomonas
           entomophila L48]
 gi|95111419|emb|CAK16139.1| putative methylcrotonoyl-CoA carboxylase alpha chain [Pseudomonas
           entomophila L48]
          Length = 654

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++ +  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEDESQLADALASAQREAQSSFGDARMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     D+ K +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPDLRKAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|327402510|ref|YP_004343348.1| methylcrotonoyl-CoA carboxylase [Fluviicola taffensis DSM 16823]
 gi|327318018|gb|AEA42510.1| Methylcrotonoyl-CoA carboxylase [Fluviicola taffensis DSM 16823]
          Length = 494

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/250 (15%), Positives = 80/250 (32%), Gaps = 19/250 (7%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+      ++   I +      A  L  DK+ +KQ V +  VP+ P +      +
Sbjct: 81  YGFLSENAGFARKVKEAGIKFIGPSPEAMELMGDKLSAKQAVKNYNVPLVPGVDEAITDV 140

Query: 119 DSQHLI----SPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
           ++   I      P +IK   GG   G+ +++        +  + S           +++ 
Sbjct: 141 EAAKKIAAEVGFPILIKASAGGGGKGMRLVENVGEFEEQMKMAQSEARSSFGDDAVFIEK 200

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFL 233
                  +           V         ++          P+ I   ++ K++   A  
Sbjct: 201 FVTKPRHIEIQVFADQLGNVVYLFERECSIQRRHQKVIEEAPSAILSPELRKKMGEAAVA 260

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY---AGYSFRELLL 290
             +A    G    +FL D      ++LE+N +              +      +  +L+ 
Sbjct: 261 VCKACNYEGAGTVEFLLDAELN-FYFLEMNTR----------LQVEHPVTEEITGTDLVE 309

Query: 291 WMVEDASCLR 300
           W V  A   R
Sbjct: 310 WQVRVARGER 319


>gi|320580211|gb|EFW94434.1| Acetyl-CoA carboxylase [Pichia angusta DL-1]
          Length = 2216

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 52/146 (35%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI  ++K++       Q++S   G  + I Q       L  
Sbjct: 225 AKEIGFPVMIKASEGGGGKGIRKVEKEEDFITLYHQAASEIPGSPIFIMQLAGSARHLEV 284

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                D +++++  A    + +G
Sbjct: 285 QLLADQYGNNISLFGRDCSVQ----RRHQKVIEEAPVTIAKEDTFRQMEAAAVRLGKLVG 340

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+     K ++LE+N +
Sbjct: 341 YVSAGTVEYLYSYADDKFYFLELNPR 366


>gi|260914500|ref|ZP_05920969.1| acetyl-CoA carboxylase [Pasteurella dagmatis ATCC 43325]
 gi|260631601|gb|EEX49783.1| acetyl-CoA carboxylase [Pasteurella dagmatis ATCC 43325]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 39/282 (13%), Positives = 80/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETICIGPAPSTKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ +   +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTAEVIRLMGDKVSAINAMKKSGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V+++++++   +  + +     
Sbjct: 133 GSDGPVGTDMAKNKEIAKRIGYPVIIKASGGGGGRGMRVVREERALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQKVVEEAPAPGISEEV 252

Query: 225 KEVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +             IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGARCAKACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|162139178|ref|YP_603039.2| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           pyogenes MGAS10750]
          Length = 454

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEIIKAGVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 137 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 197 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 257 QAAVRAAEAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 293


>gi|161527781|ref|YP_001581607.1| carbamoyl-phosphate synthase L chain ATP-binding [Nitrosopumilus
           maritimus SCM1]
 gi|160339082|gb|ABX12169.1| Carbamoyl-phosphate synthase L chain ATP-binding [Nitrosopumilus
           maritimus SCM1]
          Length = 495

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 38/279 (13%), Positives = 76/279 (27%), Gaps = 36/279 (12%)

Query: 19  GKACASALEDAGFKVSQIDVDRS--------------------VGLVLAHLKP------- 51
                      G K   +  D                          L   K        
Sbjct: 14  ALRVIRTCNALGIKTVAVYSDEDYNSLHVKKADESYHIGEAAPAKSYLNQEKILEVMLSS 73

Query: 52  --DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+     + E  +I +      +  L  DKM  K  +    VP  P
Sbjct: 74  GADAVHPG-YGFLSENDDFARLCEKNKINFIGPSADSMNLCGDKMECKAAMLKAQVPTVP 132

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                +          + I  P ++K + GG   GI ++  DQ +       +S +    
Sbjct: 133 GSPGLVDTAEEAEKIANEIGYPVLLKSVYGGGGRGIRLVTTDQELREGFETVTSESIAAV 192

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IY 224
                 V+        +                     ++  +       P+ +  +   
Sbjct: 193 GKSAIIVEKFLEKTRHIEYQMCRDHHGNAVHLFERECSIQRRNQKLIEQTPSPVVDEAKR 252

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
           +E+  L   A +A+    +  ++F     + + +++EIN
Sbjct: 253 EEIGELVVKAAEAVNYTNLGTAEF-LRADNGEFYFIEIN 290


>gi|146312064|ref|YP_001177138.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter sp.
           638]
 gi|145318940|gb|ABP61087.1| formate-dependent phosphoribosylglycinamide formyltransferase
           [Enterobacter sp. 638]
          Length = 392

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/273 (12%), Positives = 78/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                   +D + +  ++    PD     +
Sbjct: 24  GKEVAIECQRLGIEVIAVDRYADAPAMHVAHRSYVINMLDGNALRALIERENPDYVVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  L         +P   +  L       +  + + ++                +
Sbjct: 84  EAIATDTLLSLEAEGQRIVPCARAAKLTMNREGIRRLAAEELAIPT-SSYRFADGKADFL 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G   I+ + ++        +   G        V+G+   
Sbjct: 143 LAVEEIGYPCIIKPVMSSSGKGQSFIRDESALDKA--WDYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P K+     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCDPIGHRQEDG--DYRESWQPQKMSALALERAQEIARKVVIAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|94548449|gb|ABF38495.1| Biotin carboxylase [Streptococcus pyogenes MGAS10750]
          Length = 470

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 35/221 (15%), Positives = 77/221 (34%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  +   GVPV P    
Sbjct: 93  AIHPGFGFLSENSKFATMCEEMNIKFIGPSASVMDKMGDKINARSEIIKAGVPVIPGSDG 152

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +   +  +   + I  P ++K   GG   GI  ++ +  +      +S      + +G 
Sbjct: 153 EVYNAQEALAIANKIGYPVMLKASAGGGGKGIRKVETEADLEAAFNAASQEALGAFGNGA 212

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GDA  ++  +            K    + +  +   +  ++ 
Sbjct: 213 MYLEKVIYPARHIEVQILGDAYGNIIHLGERDCSLQRNNQKVLEESPSIAIGNTLRHEMG 272

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S K +++E+N +
Sbjct: 273 QAAVRAAEAVA----YENAGTIEFLLDEDSEKFYFMEMNTR 309


>gi|159185759|ref|NP_357130.2| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium
           tumefaciens str. C58]
 gi|159140893|gb|AAK89915.2| 3-methylcrotonyl-CoA carboxylase alpha subunit [Agrobacterium
           tumefaciens str. C58]
          Length = 663

 Score = 44.9 bits (104), Expect = 0.013,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ V+++      +L  +       + +   L+ +      
Sbjct: 148 ADKIGYPVLLKASAGGGGKGMRVVRQKHDFAAELAGAKREALAAFGNDRMLIEKYLERPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   +            K         LP     D+ + +   A  A 
Sbjct: 208 HVEVQVFADGHGNCVSLFERDCSIQRRHQKVIEEAPAPGLPD----DLRQRMYDAATAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI  RG    +FL DP     +++E+N +
Sbjct: 264 RAIDYRGAGTIEFLLDPSG--FYFMEMNTR 291


>gi|330901167|gb|EGH32586.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. japonica str. M301072PT]
          Length = 657

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +               +     ++          PA      + K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTASLRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|326329427|ref|ZP_08195751.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
 gi|325952753|gb|EGD44769.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Nocardioidaceae
           bacterium Broad-1]
          Length = 628

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/141 (16%), Positives = 51/141 (36%), Gaps = 1/141 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ +++   ++  ++  + +           +V+        +   
Sbjct: 142 LPLLVKASAGGGGRGMRIVRSLDALAAEIAAAEAEAASAFGDGTVFVEPYVEAGRHVEVQ 201

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGIS 244
            +      V         ++          PA +  D +   +   A  A  AI  RG  
Sbjct: 202 VVGDGAGNVAVFGERDCSVQRRHQKVVEESPAPLLPDAVRSALHEAARNAAAAIDYRGAG 261

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL+D  S + ++LE+N +
Sbjct: 262 TVEFLYDAASERFWFLEMNTR 282


>gi|311109842|ref|YP_003982693.1| acetyl-CoA carboxylase biotin carboxylase subunit 2 [Achromobacter
           xylosoxidans A8]
 gi|310764531|gb|ADP19978.1| acetyl-CoA carboxylase biotin carboxylase subunit 2 [Achromobacter
           xylosoxidans A8]
          Length = 662

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/178 (15%), Positives = 62/178 (34%), Gaps = 9/178 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ ++ +   +P  L  + S   G     E  ++   +   
Sbjct: 154 ARDIGLPVMVKAAAGGGGRGMRLVLEPGELPAALASARSEALGAFGSDELILERAVIEPR 213

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +           V         ++          P+    + +   +   A  A ++IG
Sbjct: 214 HIEIQVFADGHGNVIHLAERDCSVQRRHQKLIEEAPSPAIDEALRARMGAAAVAAAKSIG 273

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             G    +FL D  + + +++E+N +       +  E A     +  +L+ W +  A+
Sbjct: 274 YVGAGTMEFLLD-RNGEFYFMEMNTR-------LQVEHAVTEAITGLDLVEWQLRVAA 323


>gi|219113683|ref|XP_002186425.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
 gi|209583275|gb|ACI65895.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 467

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/148 (15%), Positives = 47/148 (31%), Gaps = 2/148 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK + GG   G+ ++ ++      L              +  ++   +  
Sbjct: 151 QAVRIGFPVLIKAVMGGGGKGMRLVGQESEFDDALRACQREAQSAFGNADVLLEKYLVRP 210

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    +  +   V         L+          PA   P D+   +      A +A+
Sbjct: 211 RHVEVQIVADSHGNVVHLFERDCSLQRRHQKIIEEAPASDLPPDLRARLGENGCQAARAV 270

Query: 239 GCRGISRSDFLFDPLS-RKVFWLEINVQ 265
           G       +FL D  +    F+ E+N +
Sbjct: 271 GYVNAGTVEFLLDTTTPGDFFFCEMNTR 298


>gi|171769888|sp|A2CE36|PURT_PROM3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
          Length = 392

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 6/235 (2%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  ++   ++  ++ H +PD+    +               +  IP   +  +      
Sbjct: 50  EVLDMNNSEALTAIIRHHQPDVVIPEIEALAVNALAELENEGITVIPTARATAVTMNRDR 109

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +  + + ++    P             +   +  P V+KP+   S  G  V+   + + 
Sbjct: 110 IRDLASEELALLT-PKFAYAGSAEELRHAAEPLGWPVVVKPVMSSSGKGQSVVSNPEGLR 168

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + + + G+   +        L   +         E             +      
Sbjct: 169 QAWQAAMAGSRGNSPRVIVEE---FLHFDLEITLLTIRQEDGSTLFCEPIGHEQIGGDYQ 225

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               PA++  +  K+ Q +A    + +G  G+   +F       +V + E++ +P
Sbjct: 226 CSWQPAELSTEQLKQAQSMALSITENLGGVGLFGVEFFLC--GNEVIFSELSPRP 278


>gi|124024704|ref|YP_001019011.1| phosphoribosylglycinamide formyltransferase 2 [Prochlorococcus
           marinus str. MIT 9303]
 gi|123964990|gb|ABM79746.1| GAR transformylase 2 [Prochlorococcus marinus str. MIT 9303]
          Length = 393

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/235 (11%), Positives = 74/235 (31%), Gaps = 6/235 (2%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSM 91
           +V  ++   ++  ++ H +PD+    +               +  IP   +  +      
Sbjct: 51  EVLDMNNSEALTAIIRHHQPDVVIPEIEALAVNALAELENEGITVIPTARATAVTMNRDR 110

Query: 92  DKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
            +  + + ++    P             +   +  P V+KP+   S  G  V+   + + 
Sbjct: 111 IRDLASEELALLT-PKFAYAGSAEELRHAAEPLGWPVVVKPVMSSSGKGQSVVSNPEGLR 169

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
                + + + G+   +        L   +         E             +      
Sbjct: 170 QAWQAAMAGSRGNSPRVIVEE---FLHFDLEITLLTIRQEDGSTLFCEPIGHEQIGGDYQ 226

Query: 212 THVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               PA++  +  K+ Q +A    + +G  G+   +F       +V + E++ +P
Sbjct: 227 CSWQPAELSTEQLKQAQSMALSITENLGGVGLFGVEFFLC--GNEVIFSELSPRP 279


>gi|47523756|ref|NP_999514.1| pyruvate carboxylase, mitochondrial [Sus scrofa]
 gi|32185984|gb|AAP57516.1| pyruvate carboxylase [Sus scrofa]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      V         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNVLHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|326518128|dbj|BAK07316.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 2230

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/229 (11%), Positives = 65/229 (28%), Gaps = 6/229 (2%)

Query: 39  DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQ 98
           +  +   LA  K                 + + +              + +S   M  + 
Sbjct: 143 NPRLPETLAKSKIIFIGPPGSAMRSLGDKISSTIVAQHAQVPCMPWSGTGISDTVMSDQG 202

Query: 99  VVSSCGVPVCP-SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
            V+          +      +     I  P +IK  +GG   GI ++   +   +     
Sbjct: 203 YVTVPDEAYANACVTSWEQGLQKAEEIGWPVMIKASEGGGGKGIRMVDSAEKFKVAFQAV 262

Query: 158 SSWNHGDQLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
            S   G  + I +       L   ++ D   +   +            +           
Sbjct: 263 FSEVPGSPIFIMKLAGSARHLEVQLIADQYGNAISLFGRDCSVQ----RRHQKIIEEAPV 318

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                + ++E+++ A    + +G       ++L+       ++LE+N +
Sbjct: 319 TIARPEKFEEMEKAAVRLAKLVGYVSAGTVEYLYSHSDDSFYFLELNPR 367


>gi|260768660|ref|ZP_05877594.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio furnissii CIP
           102972]
 gi|260616690|gb|EEX41875.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio furnissii CIP
           102972]
 gi|315180362|gb|ADT87276.1| phosphoribosylglycinamide formyltransferase 2 [Vibrio furnissii
           NCTC 11218]
          Length = 391

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/273 (13%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID-------------------VDRS-VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V   D                   +D + +  V+   KP      +
Sbjct: 22  GKEVAIECQRLGLEVIACDRYEHAPAMQVAHRSHVFDMLDANALQQVIDLEKPHYVVPEI 81

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                   +      L  +P  ++  L       +  + + +S                +
Sbjct: 82  EAIATSKLVELEAQGLNVVPTANATRLTMNREGIRRLASEELSLPT-SPYQFADNYDDFV 140

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   +  P V KP+   S  G  VIK  + +        +   G        V+G    
Sbjct: 141 AAVEFVGIPCVCKPVMSSSGKGQSVIKTAEDVEKA--WQYAQEGGRTGAGRVIVEGFIDF 198

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +       S    P  +  +  K  + +A     A+
Sbjct: 199 DYEITLLTVRAVDGVHFCAPIGHRQEDGDYRESWQ--PQAMSENALKAAEYVAEQIVNAL 256

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 257 GGYGLFGVELFV--KGDQVIFNEVSPRPHDTGM 287


>gi|148252265|ref|YP_001236850.1| putative biotin carboxylase [Bradyrhizobium sp. BTAi1]
 gi|146404438|gb|ABQ32944.1| putative biotin carboxylase [Bradyrhizobium sp. BTAi1]
          Length = 651

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/150 (12%), Positives = 48/150 (32%), Gaps = 2/150 (1%)

Query: 117 TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
            +     I  P +IK + GG   G+ ++    +    L  + S            ++   
Sbjct: 148 MLREARRIGFPVMIKAVAGGGGRGMRLVSDADAFLDMLRSARSEAAAAFGDGTVILEKAI 207

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAH 235
                +       +             ++          P+  +  ++   +  +A  A 
Sbjct: 208 ANPRHIEIQVFGDSHGNAVHLGERDCSVQRRHQKLIEEAPSPAVGPELRARMGAVAVQAV 267

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+   G    +FL D    + +++E+N +
Sbjct: 268 KALVYEGAGTLEFLLDG-DGQFYFMEMNTR 296


>gi|320032953|gb|EFW14903.1| acetyl-/propionyl-coenzyme A carboxylase subunit alpha
           [Coccidioides posadasii str. Silveira]
          Length = 671

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +IK + GG   GI +++ + ++   + ++   +   ++ +E+         
Sbjct: 153 FAAEVGYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAA---VEGY 209

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
             +    +      V         ++          PA      +   V   A      I
Sbjct: 210 HHVEVQVIGDGTGQVRHLWERDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRI 269

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL +    + ++LEIN +
Sbjct: 270 KYLSLGTFEFLVNEQVSEFYFLEINPR 296


>gi|312130410|ref|YP_003997750.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
 gi|311906956|gb|ADQ17397.1| acetyl-CoA carboxylase, biotin carboxylase [Leadbetterella
           byssophila DSM 17132]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 22/150 (14%), Positives = 52/150 (34%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +I+           +       + +    L +   +  
Sbjct: 148 AEEIGYPVIIKATAGGGGRGMRIIRHADEFQKHWEDAKMESGAAFGNDGLYLEKFIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD   +V+ ++           +             +  ++ +++   A    
Sbjct: 208 HIEIQIVGDQYGNVSHLSERDCSIQ----RRHQKLIEETPSPIVSPELREQMGAAAVAGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI   G    +FL D    K +++E+N +
Sbjct: 264 KAIRYEGAGTIEFLVDKY-GKFYFMEMNTR 292


>gi|311900598|dbj|BAJ33006.1| putative acyl-CoA carboxylase [Kitasatospora setae KM-6054]
          Length = 455

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/143 (20%), Positives = 57/143 (39%), Gaps = 10/143 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH----GDQLLIEQYVDG-IELTCG 180
            P ++K + GG   G+ V++ D  +     ++ +        ++L +E+YVDG   +   
Sbjct: 153 YPVILKAVAGGGGRGMAVVRDDAEMAGAYQETRAHARAVFGDERLYLERYVDGARHIEVQ 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           V+ D   +   +A           K    +    LP  +  +I     R A      +G 
Sbjct: 213 VLCDRHGNAVHLAERDCSVQRRHQKLIEESPAPNLPDPLRREICAAAVRGALS----VGY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEIN 263
            G +  +F+  P   + F +E+N
Sbjct: 269 VGAATFEFVLAP-DGRFFLMEVN 290


>gi|298674381|ref|YP_003726131.1| hypothetical protein Metev_0417 [Methanohalobium evestigatum
           Z-7303]
 gi|298287369|gb|ADI73335.1| protein of unknown function DUF201 [Methanohalobium evestigatum
           Z-7303]
          Length = 406

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 16/229 (6%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
           + V   ++  + D    VL     + G      E L     ++         DK R  + 
Sbjct: 63  KKVVEWISEFEIDFDAIVL-----DSGFEYINQEQLPSKVLNNSQEIMNEVTDKYRFARK 117

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           + S  +P   +        D +++   P ++KP + G  +     +    +   + +   
Sbjct: 118 LESMDIPHPITY----SANDIKNINDYPIIVKPKRAGGGMFNRKAESFDELESVIDELLE 173

Query: 160 WNHG---DQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
                  D L+I+++  GI ++  ++             +     +          ++ P
Sbjct: 174 TYPLWTLDDLIIQKFEKGIPVSVSMVSTGDNAYAIAINEQLIGEPWLTDTEFAYCGNITP 233

Query: 217 AKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +              +    +G +G +  DF+          LEIN +
Sbjct: 234 FETLYQDEMYKISKQLMLE--LGLKGSNGVDFIITEDG--PVVLEINPR 278


>gi|303322633|ref|XP_003071308.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
 gi|240111010|gb|EER29163.1| Carbamoyl-phosphate synthase L chain, ATP binding domain containing
           protein [Coccidioides posadasii C735 delta SOWgp]
          Length = 606

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 49/147 (33%), Gaps = 4/147 (2%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P +IK + GG   GI +++ + ++   + ++   +   ++ +E+         
Sbjct: 88  FAAEVGYPVMIKAVDGGGGRGIRLVRSEDTLQASVDRAMGESPSKKVFVEKAA---VEGY 144

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQRLAFLAHQAI 238
             +    +      V         ++          PA      +   V   A      I
Sbjct: 145 HHVEVQVIGDGTGQVRHLWERDCSIQRRFQKIVECAPALMKDRKLICLVIEAALRIANRI 204

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
               +   +FL +    + ++LEIN +
Sbjct: 205 KYLSLGTFEFLVNEQVSEFYFLEINPR 231


>gi|225012404|ref|ZP_03702840.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-2A]
 gi|225003381|gb|EEG41355.1| acetyl-CoA carboxylase, biotin carboxylase [Flavobacteria bacterium
           MS024-2A]
          Length = 444

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/150 (12%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
                 P ++K   GG   G+  + K+  +      +       + +    + +   +  
Sbjct: 148 AKEFGYPVMLKATAGGGGKGMRAVWKEDELEKAWESARQEAKAAFGNDGMYMEKLIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   ++GD++     ++           +     +       +   + K++   A  A 
Sbjct: 208 HIEIQIVGDSTGKACHLSERDCSIQ----RRHQKLTEETPSPFMTDALRKKMGDAAVKAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G    +FL D      +++E+N +
Sbjct: 264 EFIKYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|332304482|ref|YP_004432333.1| acetyl-CoA carboxylase, biotin carboxylase [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171811|gb|AEE21065.1| acetyl-CoA carboxylase, biotin carboxylase [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 81/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    D S+  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADESLKHVLLADETICIGKPSATESYLNIPRIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+      +E     +         L  DK+ + + + + GVP  P 
Sbjct: 74  NSVAIHPGYGFLAENADFAEAVERSGFIFIGPKAETINLMGDKVSAIKSMKAAGVPCVPG 133

Query: 111 ILVNRF-----TMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                             I  P ++K   GG   G+ V++ +  +   +  +        
Sbjct: 134 SDGPLNDDEARNKKLAKEIGYPIIVKAAGGGGGRGMRVVRNEAELIGSIAATKGEAAAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA    +  +
Sbjct: 194 NNDVVYMEKFLENPRHVEIQVLADGQGNAIHLGERDCSMQRRHQKVVEEAPAPGISEEMR 253

Query: 226 EVQR-LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FLF   + + +++E+N +
Sbjct: 254 AKIGARCCQACIDIGYRGAGTFEFLF--ENDEFYFIEMNTR 292


>gi|307211718|gb|EFN87719.1| Acetyl-CoA carboxylase [Harpegnathos saltator]
          Length = 2324

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/221 (11%), Positives = 72/221 (32%), Gaps = 13/221 (5%)

Query: 50  KPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
           K ++ F    G                I    + +     S  +++++       +    
Sbjct: 208 KNNICFI---GPSERAMWALGDKIASSIVAQTADVPTLPWSGSELKAQYSGKKIKISSEL 264

Query: 110 SILVN----RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                       + + + I  P ++K  +GG   GI  ++  + +P    Q  +   G  
Sbjct: 265 FRKGCVASVEECLAAANKIGFPIMVKASEGGGGKGIRKVENAEELPALFRQVQTEIPGSP 324

Query: 166 LLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
           + I +       L   ++ D   +   +            +                +++
Sbjct: 325 IFIMKLAKCARHLEVQLLADNYGNAISLFGRDCSIQ----RRHQKIIEEAPAVIAKPEVF 380

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +E+++ A    + +G       ++L+D  + + ++LE+N +
Sbjct: 381 EEMEKAAVRLAKMVGYVSAGTVEYLYDT-TGRYYFLELNPR 420


>gi|302123202|gb|ADK93192.1| CAD [Platypeza sp. JFG-2010]
          Length = 1255

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 86/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++       I+ +                       V  V+   +P+    
Sbjct: 349 SGSQAIKAMKEEEIHTILINPNIATVQTSKGLADKVYFLPITPEYVEQVIRAERPNGVLL 408

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     +     +    + I +   + D+      V+     V    +
Sbjct: 409 TFGGQTALNCGVELERAGVFAKYNVKILGTPIQSIIETEDRKIFADRVNEIGEKVAPSEA 468

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   +  P + +       LG       + +    L + +  H  QL+I++
Sbjct: 469 VYSVEEALQAAERLGYPVMARAAFSLGGLGSGFADNREELIN--LATQALAHSSQLIIDK 526

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 527 SLKGW-KEVEYEVVRDAFDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNKEYNMLRTT 585

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 586 AIKVIRHFGVVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 641

Query: 291 WM 292
            +
Sbjct: 642 KL 643


>gi|222090413|gb|ACM42414.1| acetyl-coenzyme A carboxylase alpha [Sus scrofa]
          Length = 2346

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|242242369|ref|ZP_04796814.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis W23144]
 gi|242234176|gb|EES36488.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis W23144]
          Length = 375

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/264 (14%), Positives = 79/264 (29%), Gaps = 28/264 (10%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNFGEDGLVQAI 71
           GK  A + +  G+KV  +D +       V     H   D   A N L  N          
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDCPCRYVAHQFIHANYDDEQALNQLGENSDVVTYEFEN 80

Query: 72  L------ELLEIPYTHSGILASALSMDKMRSKQV--VSSCGVPVCPSILVNRFTMDSQHL 123
           +      +L ++ +   G  A  L  D++  KQ    ++  +     I  N+  + +   
Sbjct: 81  ISSEQLKKLTQLYHIPQGYQAIELLQDRLTEKQTLLEANTQIVPFIQIQTNQDLLKAIDK 140

Query: 124 ISPPYVIKPLKGGSSLGIIV-IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           +  P+++K   GG      + I+ D  +              +  ++   +         
Sbjct: 141 LGFPFIVKTRFGGYDGKGQILIRDDSELDEVYQLVEKQECVAEQYLDIKKEVSLTVTIGN 200

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
              +           +   ++                  D   E ++      +AI   G
Sbjct: 201 EQQTTYFPLQENEHQNQILFKTVV-----------PARTDKEYEARKEVEKITRAIHFVG 249

Query: 243 ISRSDFLFDPLSRKVFWLEINVQP 266
               +F  D     ++  EI  +P
Sbjct: 250 TFTVEFFIDKEDN-LYVNEIAPRP 272


>gi|237798370|ref|ZP_04586831.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
 gi|331021222|gb|EGI01279.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           syringae pv. oryzae str. 1_6]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 59/181 (32%), Gaps = 20/181 (11%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ V+ +++ +     Q+ +           Y++        +   
Sbjct: 154 YPVIIKAAGGGGGRGMRVVHREEDLIEAAAQTRAEAAAWFSNPMVYLEKYLTNPRHVEVQ 213

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIGCRGIS 244
            +   +            L+          PA    +  +     A   A   IG RG  
Sbjct: 214 VISDGQGQAIHLGDRDCSLQRRHQKVLEEAPAPFIDEQARADVLAACVKACVDIGYRGAG 273

Query: 245 RSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
             +FL+   + + +++E+N       P         EM    G    +++  M+  A+  
Sbjct: 274 TFEFLY--ENGRFYFIEMNTRVQVEHP-------VSEM--VTGI---DIVKEMLSIAAGN 319

Query: 300 R 300
           +
Sbjct: 320 K 320


>gi|195121518|ref|XP_002005267.1| GI19176 [Drosophila mojavensis]
 gi|193910335|gb|EDW09202.1| GI19176 [Drosophila mojavensis]
          Length = 2461

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   +
Sbjct: 419 KIGFPVMIKASEGGGGKGIRRVDTAEEFPALFRQVQAEVPGSPIFVMKLASGARHLEVQL 478

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D   +   +            +                ++++++++ A    + +G  
Sbjct: 479 LADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGYV 534

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                ++L+DP   + F+LE+N +
Sbjct: 535 SAGTVEYLYDPE-GRYFFLELNPR 557


>gi|158451127|gb|ABW38924.1| putative CAD trifunctional protein [Chelepteryx collesi]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEDKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I     + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKARIFEKYNVNVLGTPIQCIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +   +L   + +H DQL+I++
Sbjct: 496 VTTVDQAVTAAIQIGYPVMARSAFSLGGLGSGFANNEEELR--VLAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|166796033|ref|NP_001107741.1| acetyl-CoA carboxylase 1 [Sus scrofa]
 gi|159895418|gb|ABX09993.1| acetyl-CoA carboxylase alpha [Sus scrofa]
          Length = 2346

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|148535230|gb|ABQ85554.1| acetyl-CoA carboxylase alpha [Sus scrofa]
          Length = 2340

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQDLYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLARMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|148654610|ref|YP_001274815.1| carbamoyl-phosphate synthase L chain, ATP-binding [Roseiflexus sp.
           RS-1]
 gi|148566720|gb|ABQ88865.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Roseiflexus sp.
           RS-1]
          Length = 659

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/144 (13%), Positives = 41/144 (28%), Gaps = 1/144 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++     +   L  +             +++ +     
Sbjct: 148 ATRIGYPLLIKASAGGGGRGMRIVTNADELMPALESARREARAAFGDDTVFLEKLIARPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+        + +   A    +A G
Sbjct: 208 HIEVQFLADAYGNAVHLFERECSIQRRYQKIVEESPSPALTPKQREMIGEAAVRLARAAG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEIN 263
                 ++FL+D       +LE+N
Sbjct: 268 YVNAGTAEFLYDETDGSFAFLEVN 291


>gi|152989073|ref|YP_001351535.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa PA7]
 gi|150964231|gb|ABR86256.1| acetyl-CoA carboxylase, biotin carboxylase [Pseudomonas aeruginosa
           PA7]
          Length = 471

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   GI      + +     +  S         E +++   +   
Sbjct: 147 AERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAEVFLEKCIVNPK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++  +     + P+     +    +  LA  A +A+G
Sbjct: 207 HIEAQILADSFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL      +V+++E+N +
Sbjct: 267 YENAGTVEFLL--ADGEVYFMEMNTR 290


>gi|28200301|gb|AAO27903.1| pyruvate carboxylase [Bos taurus]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 68/230 (29%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKIGDKVEARTIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            +  VPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAADVPVVPGTNAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|114319192|ref|YP_740875.1| acetyl-CoA carboxylase, biotin carboxylase [Alkalilimnicola
           ehrlichii MLHE-1]
 gi|114225586|gb|ABI55385.1| acetyl-CoA carboxylase, biotin carboxylase [Alkalilimnicola
           ehrlichii MLHE-1]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 29/218 (13%), Positives = 66/218 (30%), Gaps = 11/218 (5%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+      +E     +         +  DK+ + + + +  +P  P    
Sbjct: 77  AIHPGYGFLSENADFAERVEQSGFVFIGPKAETIRIMGDKVAAIRAMLAADIPCVPGSGG 136

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
                    +     I  P +IK   GG   G+ V++ +  +   +  + +         
Sbjct: 137 PLTDDADANLRIAREIGYPVLIKAAAGGGGRGMRVVRSEAGLLNAISLTQTEAQSAFGDS 196

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             Y++        +    L   +            ++          PA    +  +   
Sbjct: 197 TVYMEKYLDNPRHVEVQVLADGQGNAIYLGERDCSMQRRHQKVVEEAPAPGITEEERRFI 256

Query: 229 RLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                 A + I  RG    +FL+     + F++E+N +
Sbjct: 257 GERCADACRQINYRGAGTFEFLY--QDGEFFFIEMNTR 292


>gi|15600629|ref|NP_254123.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa PAO1]
 gi|107104538|ref|ZP_01368456.1| hypothetical protein PaerPA_01005616 [Pseudomonas aeruginosa PACS2]
 gi|116053584|ref|YP_793911.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa
           UCBPP-PA14]
 gi|218894539|ref|YP_002443409.1| acetyl-CoA carboxylase subunit A [Pseudomonas aeruginosa LESB58]
 gi|254237879|ref|ZP_04931202.1| hypothetical protein PACG_03981 [Pseudomonas aeruginosa C3719]
 gi|254242988|ref|ZP_04936310.1| hypothetical protein PA2G_03775 [Pseudomonas aeruginosa 2192]
 gi|313111628|ref|ZP_07797426.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa 39016]
 gi|9951765|gb|AAG08821.1|AE004956_5 probable biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa PAO1]
 gi|115588805|gb|ABJ14820.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169810|gb|EAZ55321.1| hypothetical protein PACG_03981 [Pseudomonas aeruginosa C3719]
 gi|126196366|gb|EAZ60429.1| hypothetical protein PA2G_03775 [Pseudomonas aeruginosa 2192]
 gi|218774768|emb|CAW30585.1| probable biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa LESB58]
 gi|310883928|gb|EFQ42522.1| putative biotin carboxylase subunit of a transcarboxylase
           [Pseudomonas aeruginosa 39016]
          Length = 471

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   GI      + +     +  S         E +++   +   
Sbjct: 147 AERIGYPVMLKATSGGGGRGIRRCNSREELEQAFPRVISEATKAFGSAEVFLEKCIVNPK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++  +     + P+     +    +  LA  A +A+G
Sbjct: 207 HIEAQILADSFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL      +V+++E+N +
Sbjct: 267 YENAGTVEFLL--ADGEVYFMEMNTR 290


>gi|301784849|ref|XP_002927838.1| PREDICTED: pyruvate carboxylase, mitochondrial-like [Ailuropoda
           melanoleuca]
 gi|281346281|gb|EFB21865.1| hypothetical protein PANDA_017679 [Ailuropoda melanoleuca]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYNR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|260579784|ref|ZP_05847638.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|258602085|gb|EEW15408.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 630

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I       D       P  IK   GG   G+ V+     I      +           E 
Sbjct: 166 IPNWEQARDFADEHGMPIAIKAAFGGGGRGLKVVHDYNDIEAAFESAGREAKAAFGRGEC 225

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV+        +    L  T   V         ++          PA    D  +     
Sbjct: 226 YVEKFLTKPRHVEAQVLADTHGNVRVVGTRDCSVQRRFQKLVEEAPAPFLTDKQRTDIIE 285

Query: 231 -AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +    QA    G    +F+       V +LE+N +
Sbjct: 286 GSRSICQAANYTGAGTVEFIV-AEDGTVSFLEVNTR 320


>gi|300775896|ref|ZP_07085756.1| acetyl-CoA carboxylase subunit A [Chryseobacterium gleum ATCC
           35910]
 gi|300505446|gb|EFK36584.1| acetyl-CoA carboxylase subunit A [Chryseobacterium gleum ATCC
           35910]
          Length = 468

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/216 (15%), Positives = 75/216 (34%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+     I +   I +  +         DK  +K  + + GVP  P       + 
Sbjct: 99  YGFLSENANFSRICQKNGIKFIGASPEQIEKMGDKANAKATMKAAGVPCVPGSDGLIESY 158

Query: 119 DSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
           +    I+     P +IK   GG   G+  + K + +      +       + +G   + +
Sbjct: 159 EHAVKIAEETGYPVMIKATAGGGGKGMRAVWKAEDLKDHWESAIQEAVAAFGNGGMYMEK 218

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V GD       ++           + +   +       +  ++ +++  
Sbjct: 219 LIEEPRHIEIQVAGDQFGKACHLSERDCSVQ----RRNQKLTEETPSPFMTDELREKMGA 274

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A  A + IG  G+   +FL D      +++E+N +
Sbjct: 275 AAVKAAEFIGYEGVGTIEFLVDKHRN-FYFMEMNTR 309


>gi|198457400|ref|XP_001360655.2| GA10832 [Drosophila pseudoobscura pseudoobscura]
 gi|198135962|gb|EAL25230.2| GA10832 [Drosophila pseudoobscura pseudoobscura]
          Length = 2551

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   +
Sbjct: 509 KIGFPVMIKASEGGGGKGIRRVDTTEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQL 568

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D   +   +            +                ++++++++ A    + +G  
Sbjct: 569 LADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGYV 624

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                ++L+DP   + F+LE+N +
Sbjct: 625 SAGTVEYLYDPE-GRYFFLELNPR 647


>gi|195150591|ref|XP_002016234.1| GL10605 [Drosophila persimilis]
 gi|194110081|gb|EDW32124.1| GL10605 [Drosophila persimilis]
          Length = 2541

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   +
Sbjct: 518 KIGFPVMIKASEGGGGKGIRRVDTTEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQL 577

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D   +   +            +                ++++++++ A    + +G  
Sbjct: 578 LADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGYV 633

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                ++L+DP   + F+LE+N +
Sbjct: 634 SAGTVEYLYDPE-GRYFFLELNPR 656


>gi|156361323|ref|XP_001625467.1| predicted protein [Nematostella vectensis]
 gi|156212302|gb|EDO33367.1| predicted protein [Nematostella vectensis]
          Length = 945

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/300 (12%), Positives = 84/300 (28%), Gaps = 39/300 (13%)

Query: 18  SGKACASALEDAGFKVSQIDVD------------------------RSVGLVLAHLKPDL 53
           SG     AL++   +   ++ +                          +  V+   +PD 
Sbjct: 398 SGSQAIKALKEENIETVLMNPNIASVQTNEVGEKQADTVYFVPVTSEFIEDVIKRERPDG 457

Query: 54  AFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
              +  G          + +       +  +L + +   K    + + +  +        
Sbjct: 458 VL-LSMGGQTALNCGVDLYDKGIFQKYNVQVLGTPIESIKATEDRQIFANRLKEINEKLA 516

Query: 110 ---SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQL 166
              ++      + +   I  P +++       LG  + +      L  L   +     Q+
Sbjct: 517 PSVAVYSVEEAVKAAKKIKYPVMVRAAYALGGLGSGLCEN--EAKLRALAKKALAIAPQI 574

Query: 167 LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKE 226
           LIEQ + G                 I V   + +     ++  +        +    Y  
Sbjct: 575 LIEQSLLGW-KEVEYEVVRDAANNCITVCNMENFDPLGVHTGDSVVVAPSQTLSNQEYHM 633

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           ++  A    +  G  G     +   P S +   +EIN +  ++  S     +   GY   
Sbjct: 634 LRETAIKVVRHFGIVGECNIQYALHPTSLEYCIIEINAR--LSRSS--ALASKATGYPLA 689


>gi|153806533|ref|ZP_01959201.1| hypothetical protein BACCAC_00797 [Bacteroides caccae ATCC 43185]
 gi|149131210|gb|EDM22416.1| hypothetical protein BACCAC_00797 [Bacteroides caccae ATCC 43185]
          Length = 388

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/244 (14%), Positives = 74/244 (30%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  ++   +PD+    +      + L     E +++  +   +  +  
Sbjct: 44  ECEVFDMLNGEELERIVKKHQPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNFTMN 102

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                         +   I  P V+KPL   S  G  ++K    
Sbjct: 103 RKAIRDLAAKELGLKTARYFYAKTLDELKAAAAKIGFPCVVKPLMSSSGKGQSLVKNADE 162

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        S + GD  +L+IE+++        +        T    P            
Sbjct: 163 LEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 222

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F     +  V++ E++ +P 
Sbjct: 223 SFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLSHENG-VYFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|227544517|ref|ZP_03974566.1| acetyl-CoA carboxylase [Lactobacillus reuteri CF48-3A]
 gi|300908105|ref|ZP_07125574.1| acetyl-CoA carboxylase subunit A [Lactobacillus reuteri SD2112]
 gi|133930503|gb|ABO43823.1| AccC [Lactobacillus reuteri]
 gi|227185495|gb|EEI65566.1| acetyl-CoA carboxylase [Lactobacillus reuteri CF48-3A]
 gi|300894721|gb|EFK88074.1| acetyl-CoA carboxylase subunit A [Lactobacillus reuteri SD2112]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 34/277 (12%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHLKP--------DLAFNV------------- 57
              +L + G K   I       S+ + LA            D   N              
Sbjct: 17  IIRSLRELGIKTVAIYSTADRESLHVQLADEAVCVGTARAQDSYLNAKNILEAALGTGAQ 76

Query: 58  -LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + E   I +         L  +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAEFATMCEECGITFIGPQASVIDLMGNKEHAREQMKKSGVPVIPGSDD 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I      +D  + I  P ++K   GG   GI  I     +     ++ +          
Sbjct: 137 YITNVNDAVDVANKIGYPILLKAAAGGGGKGIRRINDHNQMRQIFSEAQNEARLSFNDDR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-Q 228
            Y++ I      +                     ++ +        P  +  +  ++   
Sbjct: 197 MYLEKIMENVKHIEVQVFRDNFGNAVFFPERDCSIQRNKQKLIEESPCVLVNEQERKKLG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++A  A  AI        +FL D  +   +++E+N +
Sbjct: 257 QIAIRAINAINYHNTGTIEFLMD-KNHHFYFMEMNTR 292


>gi|68535475|ref|YP_250180.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
 gi|68263074|emb|CAI36562.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium jeikeium K411]
          Length = 608

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/156 (17%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I       D       P  IK   GG   G+ V+     I      +           E 
Sbjct: 144 IPNWEQARDFADEHGMPIAIKAAFGGGGRGLKVVHDYNDIEAAFESAGREAKAAFGRGEC 203

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
           YV+        +    L  T   V         ++          PA    D  +     
Sbjct: 204 YVEKFLTKPRHVEAQVLADTHGNVRVVGTRDCSVQRRFQKLVEEAPAPFLTDKQRTDIIE 263

Query: 231 -AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +    QA    G    +F+       V +LE+N +
Sbjct: 264 GSRSICQAANYTGAGTVEFIV-AEDGTVSFLEVNTR 298


>gi|330982173|gb|EGH80276.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. aptata str. DSM 50252]
          Length = 649

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 27/146 (18%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +               +     ++          PA      + K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTASLRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|325106012|ref|YP_004275666.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter saltans DSM
           12145]
 gi|324974860|gb|ADY53844.1| acetyl-CoA carboxylase, biotin carboxylase [Pedobacter saltans DSM
           12145]
          Length = 446

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
            + I  P ++K   GG   G+ V+ KD+        +       + +    + +   D  
Sbjct: 148 ANKIGYPIILKATAGGGGRGMRVVWKDEDFENAWDSARQESGAAFGNDGLYMEKYIEDPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD       ++           +             +  ++ + +   A    
Sbjct: 208 HIEIQVIGDQFGTACHLSERDCSIQ----RRHQKLVEEAPSPFMTDELRQRMGEAAIKGA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A+   G    +FL D      +++E+N +
Sbjct: 264 VAVKYEGAGTIEFLVDKHRN-FYFMEMNTR 292


>gi|254933975|gb|ACT87596.1| carbamoylphosphate synthetase [Dinophalus lechriomita]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPXGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKAGIFEKYNVTVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALTAAKQIGYPVMARSAFSLGGLGSGFANNEDELRS--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKEYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|222102935|ref|YP_002539974.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
 gi|221739536|gb|ACM40269.1| acetyl-CoA carboxylase biotin carboxylase [Agrobacterium vitis S4]
          Length = 662

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 18/143 (12%), Positives = 41/143 (28%), Gaps = 2/143 (1%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P +IK   GG   G+  + +       L                 ++   L    + 
Sbjct: 151 IGYPVLIKASAGGGGKGMRRVDRADDFADALASCQREARNAFGDDHVLIEKYILKPRHIE 210

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRG 242
                 +             ++          PA  +  +    +   A  A +A+   G
Sbjct: 211 IQVFADSSGHCIHLYERDCSVQRRHQKVLEEAPAPGMTAERRAAMGAAAVTAAKAVNYVG 270

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +F+ +      +++E+N +
Sbjct: 271 AGTVEFIVN-SDGSFYFMEMNTR 292


>gi|254466901|ref|ZP_05080312.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
 gi|206687809|gb|EDZ48291.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Rhodobacterales bacterium Y4I]
          Length = 645

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/187 (13%), Positives = 58/187 (31%), Gaps = 23/187 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK + GG   G+ +++K +     L  +           +  ++       
Sbjct: 148 AGKIGYPVLIKAVAGGGGKGMRLVEKPEEFADALKSAQGEATTAFGNPDVLIEKYIQQPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +          AV   +      +             +  ++ + + +    A +AIG 
Sbjct: 208 HIEVQVFGDGTQAVHLFERDCSLQRRHQKVIEEAPAPGMTEEMREAMGQAGVRAAEAIGY 267

Query: 241 RGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLL 290
           +G    +F+ D          +++E+N +              +       G    +L+ 
Sbjct: 268 KGAGTVEFIVDGSDGLRPDGFWFMEMNTR----------LQVEHPVTELITGV---DLVE 314

Query: 291 WMVEDAS 297
           W +  AS
Sbjct: 315 WQLRVAS 321


>gi|164420135|gb|ABY55007.1| carbamoylphosphate synthetase [Poecilus lucublandus]
          Length = 718

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 129 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 188

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 189 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIQAIIDTEDRKIFSERISVIGEKVAPSCA 248

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +D+   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 249 VYSVPEAIDAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 306

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 307 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 365

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 366 AINVIRHFGVVGECNIQYAVNPYAEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 421

Query: 291 WM 292
            +
Sbjct: 422 KL 423


>gi|153806141|ref|ZP_01958809.1| hypothetical protein BACCAC_00396 [Bacteroides caccae ATCC 43185]
 gi|149130818|gb|EDM22024.1| hypothetical protein BACCAC_00396 [Bacteroides caccae ATCC 43185]
          Length = 1405

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 18/48 (37%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDG 66
                 ALE  G+ V  +         +  ++PD   N+ HG  G+  
Sbjct: 214 ATDLIKALEKEGYNVYPVQSMTRFMSFIDEVQPDAVINMAHGRMGDRM 261


>gi|154253730|ref|YP_001414554.1| acetyl-CoA carboxylase, biotin carboxylase [Parvibaculum
           lavamentivorans DS-1]
 gi|154157680|gb|ABS64897.1| acetyl-CoA carboxylase, biotin carboxylase [Parvibaculum
           lavamentivorans DS-1]
          Length = 447

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/219 (15%), Positives = 70/219 (31%), Gaps = 8/219 (3%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D      +G   E+     IL+   I +         L  DK+++K    S G+P  P  
Sbjct: 76  DAVHPG-YGFLSENAKFADILKAHGITFIGPSGDHIRLMGDKIQAKVTAKSLGIPCVPGS 134

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL 167
              I  +            P ++K   GG   G+ V +    +   L  + +        
Sbjct: 135 DGAITTDEQAYKVAEETGYPVLVKAAAGGGGRGMKVARSRGELSSALSTARAEAKAAFGD 194

Query: 168 IEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKE 226
              Y++        +    +  +   V         L+          P+         E
Sbjct: 195 DALYMEKYLGQPRHIEVQVIADSHGNVAHLGERDCSLQRRHQKVLEESPSPALNTAQRAE 254

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +  +   A + +G  G+   +FL+     + F++E+N +
Sbjct: 255 IGGIVSKAIKGLGYLGVGTIEFLY--EDGQFFFIEMNTR 291


>gi|119486250|ref|ZP_01620309.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
 gi|119456463|gb|EAW37593.1| D-alanine--D-alanine ligase [Lyngbya sp. PCC 8106]
          Length = 291

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 36/191 (18%), Positives = 74/191 (38%), Gaps = 19/191 (9%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           + PP+++KP    +SLG+ +++    I   L         + LL+E Y+ G E+   V+ 
Sbjct: 83  MQPPFIVKPNSEDNSLGVTLVQNPDQITEALRIGF--ELDEILLVEDYIPGREIRVAVVE 140

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNST-----------------HVLPAKIPLDIYKE 226
                     +       + ++                         V PA +  +++++
Sbjct: 141 REGKLCVLPMIEYLFTEEHPIRTVQDKLHLQSDGMPEKQPEKPVAKPVCPANVAPELFEK 200

Query: 227 VQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           +   A  AH A+GCR  S  DF     + + + LE  +      +S+   M    G +  
Sbjct: 201 LANAAKNAHIALGCRDYSLYDFRVHAETHEPYMLEAGLFWSFGKISMISRMLIVDGQNLE 260

Query: 287 ELLLWMVEDAS 297
           ++ L +  +A+
Sbjct: 261 DVALELWREAA 271


>gi|99078235|ref|YP_611493.1| acetyl-CoA carboxylase biotin carboxylase subunit [Ruegeria sp.
           TM1040]
 gi|99035373|gb|ABF62231.1| Carbamoyl-phosphate synthase L chain ATP-binding [Ruegeria sp.
           TM1040]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 28/145 (19%), Positives = 49/145 (33%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V    Q +     Q+ +           YV+   L+  
Sbjct: 149 AEEIGFPVMIKAAAGGGGRGIRVATTAQELKSLAPQAKAEAEAAFGDGGLYVERAILSPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E AV   +      +             +       +   A    +A+  
Sbjct: 209 HIEVQILGDGENAVHCFERECSLQRRRQKVWEEAGADCLDEQTRAALCASAVALAKAVNY 268

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    ++L+D  S + F++E+N +
Sbjct: 269 RGAGTLEYLYDAASNEFFFIEMNTR 293


>gi|22536535|ref|NP_687386.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae 2603V/R]
 gi|25010413|ref|NP_734808.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae NEM316]
 gi|76787868|ref|YP_329073.1| acetyl-CoA carboxylase biotin carboxylase subunit [Streptococcus
           agalactiae A909]
 gi|76798478|ref|ZP_00780715.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76799001|ref|ZP_00781199.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76799392|ref|ZP_00781546.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|77406538|ref|ZP_00783589.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae H36B]
 gi|77411460|ref|ZP_00787805.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae CJB111]
 gi|22533368|gb|AAM99258.1|AE014207_19 acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 2603V/R]
 gi|23094765|emb|CAD45984.1| Unknown [Streptococcus agalactiae NEM316]
 gi|76562925|gb|ABA45509.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae A909]
 gi|76585260|gb|EAO61864.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76585651|gb|EAO62211.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|76586179|gb|EAO62700.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 18RS21]
 gi|77162463|gb|EAO73429.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae CJB111]
 gi|77174845|gb|EAO77663.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae H36B]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARTEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +     I  P ++K   GG   GI  +K    +      +S      + +G 
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+   +  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVLEESPSVAIGNTLRQQIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAEAVS----YENAGTIEFLLDENSGQFYFMEMNTR 293


>gi|253996650|ref|YP_003048714.1| phosphoribosylglycinamide formyltransferase 2 [Methylotenera
           mobilis JLW8]
 gi|253983329|gb|ACT48187.1| phosphoribosylglycinamide formyltransferase 2 [Methylotenera
           mobilis JLW8]
          Length = 399

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 38/283 (13%), Positives = 80/283 (28%), Gaps = 30/283 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK    AL+  G +V  +D                     D  +  ++A  +P L    +
Sbjct: 23  GKEVIIALQRLGVEVIAVDRYENAPGHQVAHRAHVIDMTDDHVLRQLIALEQPHLIVPEI 82

Query: 59  HG-NFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
              N      ++       IP   +  L       +  + + ++    P   +       
Sbjct: 83  EALNTATLANIEKSGIATVIPTVKAVQLTMNREGIRRLAAEELNLPTSPYAFARSEAELQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI-- 175
                 I  P  IKP    S  G   I +   +      S + + G        V+G   
Sbjct: 143 AAIDGGIGYPCFIKPTMSSSGKGQSRITQASEVSTA--WSYAASAGRVNQGVVIVEGQID 200

Query: 176 -ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLA 234
            +    ++   + D                +          P  +     +E +R+A   
Sbjct: 201 FDYEITLLTIRAKDAQGEISTYFCDPIGHKQEKGDYVESWQPQAMASKALEESKRIAKAV 260

Query: 235 HQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEM 277
             ++G  G+   +        +V++ E++ +P      +    
Sbjct: 261 TDSLGGLGLFGVELFV--KGDQVWFSEVSPRP--HDTGMVTMA 299


>gi|284990020|ref|YP_003408574.1| carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
 gi|284063265|gb|ADB74203.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Geodermatophilus obscurus DSM 43160]
          Length = 666

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 2/147 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++KP  GG   G+ V++ +  +   +  +     G        V+    +  
Sbjct: 148 AVEVGFPVLLKPSAGGGGKGMRVVRAEAELGDAIAGARREARGSFGDDTLLVERYVGSAR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         L+          P+ +     +      A  A +A+G
Sbjct: 208 HVEVQVLGDAHGTVVHLGERECSLQRRHQKVIEEAPSPLLDAATRAAMGTAAVEAARAVG 267

Query: 240 CRGISRSDFLFDPLS-RKVFWLEINVQ 265
             G    +F+ D       F+LE+N +
Sbjct: 268 YTGAGTVEFIVDAERPSDFFFLEMNTR 294


>gi|213966146|ref|ZP_03394333.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           amycolatum SK46]
 gi|213951244|gb|EEB62639.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           amycolatum SK46]
          Length = 1119

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 90/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DV------------DRSVGLVLAHL-----KP 51
           SG      L + G +V+ +         D              + +  +LA         
Sbjct: 29  SGTQACRVLREEGLRVTLVNSNPATIMTDPEFADSTYIEPIETKYIEKILAKEAAEGNPI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       + ILE   +    + I A     D+   K +V+  G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDREGILEKYNVELIGADIPAIQRGEDRQMFKDIVAKIGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSRVCHNMDEVHETVAELGLPVVVRPSFTMGGLGSGLAFNQEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +   
Sbjct: 209 VLIEESILGWKEFELELMRDGDDNVVVVCSIENVDALGVHTGDSVTVAPSMTLTDREFQT 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAILREVGVDTGGCNIQFAINPNDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKIAAKL 331


>gi|197106651|ref|YP_002132028.1| phosphoribosylglycinamide formyltransferase 2 [Phenylobacterium
           zucineum HLK1]
 gi|196480071|gb|ACG79599.1| phosphoribosylglycinamide formyltransferase 2 [Phenylobacterium
           zucineum HLK1]
          Length = 398

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/288 (12%), Positives = 79/288 (27%), Gaps = 35/288 (12%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A  L+  G +V  +D            RS          +  V+   +P L    +
Sbjct: 23  GKEVAIELQRLGCEVIAVDRYADAPAMQVAHRSHVVTMTDPAALRRVIEAERPHLVVPEI 82

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                ++ +      L   IP   +  L       +  + + +         +       
Sbjct: 83  EAIATDELVRIEAEGLASVIPTARAAQLTMNREGIRRLAAEELGLPTSAYAFAGSEAELA 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIEL 177
             +  +   P  +KP+   S  G   +++ + I        +   G        V+G   
Sbjct: 143 RAAAEVTGFPCFVKPVMSSSGKGQSYVERPEEIAGA--WRYALEGGRVEQPRVIVEGR-- 198

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSL-----NSTHVLPAKIPLDIYKEVQRLAF 232
                 + +              S+                  P  +        + ++ 
Sbjct: 199 -VDFDFEITQLTVRSLREGKVETSFCAPIGHRQVKGDYVESWQPQPMSETALARAREISA 257

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
              +A+G  GI   +        +V++ E++ +P      +    A +
Sbjct: 258 AVTEALGGLGIFGVELFV--KGDEVWFSEVSPRP--HDTGLVTLAAQH 301


>gi|52786343|ref|YP_092172.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|163119539|ref|YP_079758.2| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           licheniformis ATCC 14580]
 gi|319645075|ref|ZP_07999308.1| AccC protein [Bacillus sp. BT1B_CT2]
 gi|52348845|gb|AAU41479.1| AccC [Bacillus licheniformis ATCC 14580]
 gi|145903047|gb|AAU24120.2| acetyl-CoA carboxylase subunit (biotin carboxylase subunit)
           [Bacillus licheniformis ATCC 14580]
 gi|317392884|gb|EFV73678.1| AccC protein [Bacillus sp. BT1B_CT2]
          Length = 450

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 ARDIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  T             ++          P+    + I +++ + A  A +A+ 
Sbjct: 208 HVEIQVLADTHGNTIHLGERDCSIQRRLQKLLEETPSPALDEGIREQMGQAAVKAAEAVK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D   +K +++E+N +
Sbjct: 268 YTGAGTVEFIYDYREQKFYFMEMNTR 293


>gi|89092353|ref|ZP_01165307.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanospirillum sp.
           MED92]
 gi|89083441|gb|EAR62659.1| methylcrotonyl-CoA carboxylase, alpha subunit [Oceanospirillum sp.
           MED92]
          Length = 664

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 20/144 (13%), Positives = 46/144 (31%), Gaps = 2/144 (1%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
               P ++K + GG   G+ V++  +     L+ +           +  ++        +
Sbjct: 150 KCGYPQLLKAVAGGGGKGMRVVESLEEFDEALVSACREAQNAFGNPDMLIERYLTQPRHV 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCR 241
                                ++          PA     ++   +   A  A QAI   
Sbjct: 210 EIQVFCDKHGNGIYLAERDCSVQRRHQKVIEEAPAPGLSDEVRVAMGEAAVRAAQAIDYV 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G    +FL+D +    +++E+N +
Sbjct: 270 GAGTVEFLYD-VDGSFYFMEMNTR 292


>gi|330890779|gb|EGH23440.1| 3-methylcrotonyl-CoA carboxylase alpha subunit [Pseudomonas
           syringae pv. mori str. 301020]
          Length = 649

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+  ++    +   L  +              V+   LT  
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKGVEHSGELAEALASAQREALSSFGDARMLVEKYVLTPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTPELRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|320168344|gb|EFW45243.1| pyruvate carboxylase [Capsaspora owczarzaki ATCC 30864]
          Length = 1208

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 25/141 (17%), Positives = 49/141 (34%), Gaps = 2/141 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P +IK   GG   G+ VI+ +  +    L+ +S           +++        +   
Sbjct: 212 LPVIIKAAFGGGGRGMRVIRNESELSEGYLRCTSEAKSAFGDGTVFIERYIENPRHIEVQ 271

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
            L      V         ++        V PA   P ++   +   A    + I  R   
Sbjct: 272 ILADNYGNVVHLFERDCSVQRRHQKVIEVAPAVNLPTNVRDAILESALKLARHIKYRNAG 331

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +FL DP   + +++E+N +
Sbjct: 332 TVEFLVDPQ-HRHYFIEVNPR 351


>gi|315638179|ref|ZP_07893361.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
 gi|315481715|gb|EFU72337.1| acetyl-CoA carboxylase, biotin carboxylase [Campylobacter
           upsaliensis JV21]
          Length = 481

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 35/240 (14%), Positives = 82/240 (34%), Gaps = 17/240 (7%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+ R +  +      D      +G   E+  +    E   I +            +K  
Sbjct: 62  LDIAR-IIEIAKACGADAIHPG-YGFLSENYEIAKACEEANIIFIGPKSEVIYKMGNKNI 119

Query: 96  SKQVVSSCGVPVCPSILVNRFT-----MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSI 150
           ++ +++  G+PV P              +    I  P ++K   GG   GI V+ +++ +
Sbjct: 120 ARNLMAKNGIPVVPGTEKLNDLSLAQLKEQAERIGYPVILKASGGGGGRGIRVVHQEEEL 179

Query: 151 PLDLLQSS-----SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELK 205
                         +N+ +  + +  V+   +   V+GD   ++  +            +
Sbjct: 180 ENAFESCKREALAYFNNDEVFMEKYIVNPRHIEFQVLGDNYGNIIHLCERDCSIQ----R 235

Query: 206 YSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                        I  ++ K +   A  A +A+        +FL D    + +++E+N +
Sbjct: 236 RHQKVVEIAPCPGISENLRKTMGVTAVAAAKAVSYTNAGTIEFLLDDY-NRFYFMEMNTR 294


>gi|297616613|ref|YP_003701772.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophothermus
           lipocalidus DSM 12680]
 gi|297144450|gb|ADI01207.1| acetyl-CoA carboxylase, biotin carboxylase [Syntrophothermus
           lipocalidus DSM 12680]
          Length = 452

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 48/146 (32%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   G+ +    + +   L  + +           Y++       
Sbjct: 150 ANEIGYPVLIKAASGGGGRGMRLAHNPKDMEKALATAQAEAQAAFGDGSVYIEKYIEEPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    L   +  +         ++  +       P   I  +  K +   A LA +A G
Sbjct: 210 HIEIQVLGDEQGDLVYLGERDCSIQRRNQKLLEEAPSIFINEETRKRMGETAVLAARAAG 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D      +++E+N +
Sbjct: 270 YCSAGTVEFLVDKHHN-FYFIEMNTR 294


>gi|288930717|ref|YP_003434777.1| acetyl-CoA carboxylase, biotin carboxylase [Ferroglobus placidus
           DSM 10642]
 gi|288892965|gb|ADC64502.1| acetyl-CoA carboxylase, biotin carboxylase [Ferroglobus placidus
           DSM 10642]
          Length = 514

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 2/146 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P  +K   GG  +GI +   ++ +     +S             YV+      
Sbjct: 146 FAEKVGYPVAVKASGGGGGIGISIAHNEEELVKAFERSKKLGEKYFKDPTVYVEKYLPKP 205

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             +    L      +   +      +                ++ ++  ++A    + IG
Sbjct: 206 RHIEFQILADDSKVIHLGERECSIQRRHQKLIEEAPSPIFDEEMREKFGKIAVKGAKHIG 265

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +FL+     ++++LE+N +
Sbjct: 266 YRNAGTMEFLY--QDGEIYFLEMNTR 289


>gi|311739512|ref|ZP_07713347.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|311305328|gb|EFQ81396.1| carbamoyl-phosphate synthase, large subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 1113

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 41/307 (13%), Positives = 94/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLK-----P 51
           SG      L++ G +V+ ++ +                       +  +L   +      
Sbjct: 29  SGTQACRVLKEEGLRVTLVNSNPATIMTDPEFADHTYVEPIEPEYIEKILVKEREEGHPI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       Q IL+   I    + I A     D+ + K +V+S G   
Sbjct: 89  DAVLATLGGQTALNAAVQLDRQGILDKYGIELIGADIDAIERGEDRQKFKDIVASIGGES 148

Query: 108 CPSILVNRFTMDSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +   ++ +        + +    
Sbjct: 149 ARSAVCHNMDEVHETVDKLGLPVVVRPSFTMGGLGSGLAFNNEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +  K
Sbjct: 209 VLIEESILGWKEYELELMRDGDDNVVVVASIENVDALGVHTGDSVTVAPALTLTDREFQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
                  +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDLGIAIIREVGVDTGGCNIQFAVNPDDGRIIVIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331



 Score = 37.5 bits (85), Expect = 2.4,   Method: Composition-based stats.
 Identities = 22/168 (13%), Positives = 65/168 (38%), Gaps = 10/168 (5%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD-GIELTC 179
              I  P +++P       G+ ++  ++++   + +++  +    +L+++++D  IE+  
Sbjct: 723 ASSIGYPVLVRPSYVLGGRGMEIVYDEKALEDYIERATELSPDHPVLVDRFLDSAIEIDV 782

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
             + D +       +   +           +S  + P  +  +  ++V+    L  + IG
Sbjct: 783 DALCDGNEVYLGGVMEHIEEAGIHSG---DSSCALPPMTLGPEDIEKVRTSTRLLAEGIG 839

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
            +G+    F        ++ +E N +   T     P ++   G    +
Sbjct: 840 VKGLMNVQFAL--KDDILYVIEANPRASRT----VPFVSKATGVPLAK 881


>gi|288549764|ref|ZP_05968093.2| phosphoribosylglycinamide formyltransferase 2 [Enterobacter
           cancerogenus ATCC 35316]
 gi|288317320|gb|EFC56258.1| phosphoribosylglycinamide formyltransferase 2 [Enterobacter
           cancerogenus ATCC 35316]
          Length = 377

 Score = 44.9 bits (104), Expect = 0.014,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D   D                   ++  ++A  KP      +
Sbjct: 9   GKEVAIECQRLGVEVIAVDRYPDAPAMHVAHRSYVINMLDGEALRALIAKEKPHYVVPEI 68

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P  ++  L       +  + + +                 +
Sbjct: 69  EAIATDTLVALEQEGQRVVPSANAAKLTMNREGIRRLAAEELQLPT-SSYRFAGDKAGFL 127

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P +IKP+   S  G  +I+    +      + +   G        ++G+   
Sbjct: 128 QAVEEIGYPCIIKPVMSSSGKGQSLIRDSLQLDSA--WNYAQQGGRAGAGRVIIEGVVKF 185

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +           +            P ++     +  Q +A     A+
Sbjct: 186 DFEITLLTISAADGVHFCDPIGHRQEDG--DYRESWQPQRMSALALQRAQEIARKTVLAL 243

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 244 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 274


>gi|301779043|ref|XP_002924940.1| PREDICTED: acetyl-CoA carboxylase 1-like [Ailuropoda melanoleuca]
          Length = 2385

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 304 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKV 363

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 364 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 420

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 421 -RRHQKIIEEAPAAIATPAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 478

Query: 264 VQ 265
            +
Sbjct: 479 PR 480


>gi|302036566|ref|YP_003796888.1| pyruvate carboxylase subunit A [Candidatus Nitrospira defluvii]
 gi|300604630|emb|CBK40962.1| Pyruvate carboxylase, subunit A [Candidatus Nitrospira defluvii]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/273 (14%), Positives = 93/273 (34%), Gaps = 22/273 (8%)

Query: 12  REVSLSSGKACASALEDAGFKV------SQIDVD--------RSVGLVLAHLKPDLAFNV 57
           RE+++++  A  S  + +G  V        +           + +  +   +  D     
Sbjct: 22  RELNIATA-AIYSEADSSGIYVKKADESYLVGPGPVKGFLDGKQIVEIAKRIGADAIHPG 80

Query: 58  LHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILV 113
            +G   E+     + +   I +         L   K++++Q+    GVP+ P     +  
Sbjct: 81  -YGFLSENTKFARLCQTSGITFIGPSPETIDLMGSKVKARQIAQQAGVPIVPGTEGGVTS 139

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
               +   H I+ P +IK   GG   G+ V++ DQ +  ++  +S            +++
Sbjct: 140 VDDALAFAHQINYPVMIKASAGGGGRGLRVVRSDQELRENIDVASREAQAAFGDGSIFIE 199

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAF 232
                   +    L      +         ++        + P+ I    +  ++   A 
Sbjct: 200 KYIERPHHIEFQILGDKHGNIIHLGERDCSIQRRHQKLIEIAPSLILTPKLRAQMGEAAI 259

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              +A+        +FL D      +++E+N +
Sbjct: 260 AIAKAVHYDNAGTVEFLLD-HEGHFYFMEMNPR 291


>gi|322433359|ref|YP_004210576.1| protein of unknown function DUF201 [Acidobacterium sp. MP5ACTX9]
 gi|321165748|gb|ADW71449.1| protein of unknown function DUF201 [Acidobacterium sp. MP5ACTX9]
          Length = 418

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 31/264 (11%), Positives = 64/264 (24%), Gaps = 24/264 (9%)

Query: 25  ALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGI 84
           AL    F    I+   ++   L    PDL              +     L +I    + +
Sbjct: 41  ALNRQ-FLYKAINPLGALRNALKQSMPDLIIPCDDRVVTHLHQLFHAEALRDIESPIAKL 99

Query: 85  LASALSMDKMR----------SKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLK 134
           +  +L                         VP    +         +   + P VIK   
Sbjct: 100 IVRSLGDPSGYPVTSNRARLLQLAKWQGVRVPETLIVHQPSDIGSWRSGRTFPLVIKADG 159

Query: 135 GGSSLGIIVIKKDQSIPLD-------------LLQSSSWNHGDQLLIEQYVDGIELTCGV 181
             +  G+ V    +                  +   S  N               +    
Sbjct: 160 TWAGNGVKVAHNLKESEQAFRRLQKRLTPVAAIWHMSEHNFYPIFENCAGSKPEIIAQTY 219

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           +   S +            S  ++  +          +    + ++   A L  + +   
Sbjct: 220 IKGTSANAMFACWHGKVVGSVTVRVIAAKHELGASTIVRTMHHPKISAAAVLIVKELNIS 279

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
           G    DF+    +   F +E+N +
Sbjct: 280 GFCGLDFIIQEGTGTPFLIELNPR 303


>gi|289663384|ref|ZP_06484965.1| carbamoyl phosphate synthase large subunit [Xanthomonas campestris
           pv. vasculorum NCPPB702]
          Length = 903

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/291 (12%), Positives = 89/291 (30%), Gaps = 29/291 (9%)

Query: 25  ALEDAGFKVSQI---------DVD------------RSVGLVLAHLKPDLAFNVLHGNFG 63
           AL D GF+   +         D D              V  ++   KP        G   
Sbjct: 411 ALRDDGFETIMVNCNPETVSTDYDTSDRLYFEPLTLEDVLEIVELEKPKGVIVQYGGQTP 470

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHL 123
                      + +  T    +  A   ++ +          P       +   +     
Sbjct: 471 LKLARALEANGVPVIGTSPDSIDLAEDRERFQQLVDKLGLKQPPNRIARNSEEALVLARE 530

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           I  P V++P        + ++  +  +   +  +   ++   +L+++++D   +   V  
Sbjct: 531 IGYPLVVRPSYVLGGRAMEIVYGESDLARYVRDAVKVSNDSPVLLDRFLDN-AVEVDVDI 589

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
            A  D   +     +       +S  +S  + P  +  +   E++R   +  + +   G+
Sbjct: 590 IADKDGNVLIGGVMEHIEEAGVHSGDSSCSLPPYSLSPETQAELRRQVVMLAEGLNVVGL 649

Query: 244 SRSDFLF---DPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLW 291
             + F     +     V+ LE+N +   T     P ++   G    ++   
Sbjct: 650 MNTQFAVQVNEAGDDIVYLLEVNPRASRT----VPFVSKAIGIPLAKIAAR 696


>gi|296812811|ref|XP_002846743.1| acetyl-CoA carboxylase [Arthroderma otae CBS 113480]
 gi|238841999|gb|EEQ31661.1| acetyl-CoA carboxylase [Arthroderma otae CBS 113480]
          Length = 2287

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/162 (12%), Positives = 54/162 (33%), Gaps = 5/162 (3%)

Query: 105 VPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
           V        +   +     I  P ++K  +GG   GI  +  +++       ++S   G 
Sbjct: 219 VYDQGCTHSHEEGLKKAREIGFPVMVKASEGGGGKGIRKVDSEENFEALYNAAASEIPGS 278

Query: 165 QLLIEQYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDI 223
            + I +   +   L   ++ D   +   +            +                  
Sbjct: 279 PIFIMKLAGNARHLEVQLLADQYGNNISLFGRDCSVQ----RRHQKIIEEAPVTVAKQAT 334

Query: 224 YKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           ++E+++ A    + +G       ++L+     K ++LE+N +
Sbjct: 335 FQEMEKAAVRLGRLVGYVSAGTVEYLYSHADDKFYFLELNPR 376


>gi|227502849|ref|ZP_03932898.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium accolens ATCC
           49725]
 gi|227076579|gb|EEI14542.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium accolens ATCC
           49725]
          Length = 597

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 40/156 (25%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +           P  IK   GG   G+ V+     I      +           E 
Sbjct: 139 IDDWQEARAFAEEHGLPIAIKAAYGGGGRGLKVVDSMDEIEGAFNSAGREAMEAFGRAEC 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           YV+        +    L  T   V          +          PA    D     +  
Sbjct: 199 YVEKFLTHPRHVEAQVLADTHGNVRVLGTRDCSTQRRFQKLIEEAPAPALSDAQRTGIIE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +++       + +LE+N +
Sbjct: 259 GARSICSHVGYTGAGTVEYIVSE-DGTISFLEVNTR 293


>gi|187234491|gb|ACD01484.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Erinnyis ello]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKCKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALAAAIQIGYPVMARSAFSLGGLGSGFANNEEEL--KALAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|218659629|ref|ZP_03515559.1| putative urea amidolyase protein [Rhizobium etli IE4771]
          Length = 450

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 15/65 (23%), Positives = 28/65 (43%), Gaps = 17/65 (26%)

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWM 292
           +        +F++DPL  + ++LE+N       P +T         A  G    +L+ WM
Sbjct: 58  VSYESAGTIEFIYDPLREEFYFLEVNTRLQVEHP-VTE--------AVFGI---DLVEWM 105

Query: 293 VEDAS 297
           +  A+
Sbjct: 106 IRQAA 110


>gi|158451289|gb|ABW39005.1| putative CAD trifunctional protein [Phaedropsis alitemeralis]
 gi|254934055|gb|ACT87636.1| carbamoylphosphate synthetase [Phaedropsis alitemeralis]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSQVFEKYNVSVLGTPIQSIVDTEDRKIFAEKIHAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALAAALQIGYPVMARSAFSLGGLGSGFANNEEEL--KALAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|119713329|gb|ABL97393.1| acetyl-CoA carboxylase [uncultured marine bacterium EB80_02D08]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 27/213 (12%), Positives = 64/213 (30%), Gaps = 8/213 (3%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL-----V 113
           +G   ED     + E     +            DK+ +K +  + G+ + P         
Sbjct: 82  YGFLAEDHNFAEMCEKSGFKFIGPTSDTIQKMGDKITAKTLAENSGIQIVPGYKDEIPSN 141

Query: 114 NRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVD 173
                     I  P +IK   GG   G+ V++K++ +      +             Y++
Sbjct: 142 QDEFKRIARNIGYPIMIKATAGGGGRGMRVVEKEEDLIGHAEITKQEAKNGFGNETIYLE 201

Query: 174 GIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY-KEVQRLAF 232
                   +    +   +            ++          PA     +   +  +   
Sbjct: 202 KFIGNPRHIEVQIVGDGKGKAIHLGTRDCSMQRRHQKIIEEAPALNINKMSLDKTLKACI 261

Query: 233 LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              + I   G+   +FL+     + +++E+N +
Sbjct: 262 TLCEEIQYEGVGTIEFLY--EKDQFYFIEMNTR 292


>gi|78214189|ref|YP_382968.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9605]
 gi|123756826|sp|Q3AG69|PURT_SYNSC RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|78198648|gb|ABB36413.1| phosphoribosylglycinamide formyltransferase 2 [Synechococcus sp.
           CC9605]
          Length = 392

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 32/268 (11%), Positives = 69/268 (25%), Gaps = 26/268 (9%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A A +  G +V   D                       ++  V+   +PD+    +
Sbjct: 17  GKEVAIAAQRLGCRVIACDRYAGAPAMQVADVAEVLPMTDADALLEVVRRHQPDVVIPEI 76

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                          +  IP   +  +       +  +   ++                 
Sbjct: 77  EALAVHALAELEQEGITVIPTARATAVTMNRDRIRDLAAGELNLRT-ARFAYASSAEELK 135

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
                +  P V+KP+   S  G  V+     +P     + +   G    +        L 
Sbjct: 136 AVAEPLGWPVVVKPVMSSSGKGQSVVDCADDLPKAWEAAMAGARGTSTQVIVEE---FLH 192

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             +                       +          PA++      + Q +A      +
Sbjct: 193 FDLEITLLTIRQRNGETLFCAPIGHEQEGGDYQCSWQPAQLTDQQLHQAQAMAKTVTDNL 252

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G  G+   +F       +V + E++ +P
Sbjct: 253 GGAGLFGVEFFLC--DDEVIFSELSPRP 278


>gi|332286278|ref|YP_004418189.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pusillimonas
           sp. T7-7]
 gi|330430231|gb|AEC21565.1| biotin carboxylase subunit of acetyl-CoA carboxylase [Pusillimonas
           sp. T7-7]
          Length = 672

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 18/155 (11%), Positives = 46/155 (29%), Gaps = 2/155 (1%)

Query: 112 LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQY 171
              +F       +  P +IK   GG   G+ +++   +    L              +  
Sbjct: 139 QDPQFLQSQADAMGYPVLIKASAGGGGKGMRIVETSAAFAEALASCKREASSSFGDDKVL 198

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RL 230
           ++        +       T+            ++          PA    +  ++     
Sbjct: 199 IERYLQKPRHIEIQVFADTQGNCVYLFERDCSVQRRHQKVIEEAPAPGMTEERRQAMGEA 258

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A  A +A+   G    +F+      + +++E+N +
Sbjct: 259 AVAAARAVNYVGAGTVEFI-AEPDGRFYFMEMNTR 292


>gi|320547966|ref|ZP_08042248.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus equinus
           ATCC 9812]
 gi|320447390|gb|EFW88151.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus equinus
           ATCC 9812]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/281 (13%), Positives = 88/281 (31%), Gaps = 41/281 (14%)

Query: 22  CASALEDAGFKVSQID--VDRS-VGLVLAHLKP--------DLAFN-------------- 56
              A  + G     +    D++ +   LA            D   N              
Sbjct: 17  IIRAARELGINTVAVYSEADKNSLHTNLADEAICIGPARSTDSYLNMNAVLSAAIVTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + I +            DK+ ++  + +  VPV P    
Sbjct: 77  AIHPGFGFLSENSKFATMCEEMHIKFIGPSAEIMDKMGDKINARAEMIAANVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +D    +  P ++K   GG   GI  ++  + +      +S      + +G 
Sbjct: 137 EVFTADEALDVAERLGYPVMLKASAGGGGKGIRKVESAEELVPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+  +V  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSHGNVIHLGERDCSLQRNNQKVLEESPSIAIGKTLRTKIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A      +        +FL D  + + +++E+N +
Sbjct: 257 QAAVRAASA----VHYENAGTIEFLLDEKTSQFYFMEMNTR 293


>gi|296201939|ref|XP_002748343.1| PREDICTED: acetyl-CoA carboxylase 1 [Callithrix jacchus]
          Length = 2346

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/182 (10%), Positives = 55/182 (30%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      +    + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWHENDFSKRILNVPQELYEKGYVKDVDDGLQAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           A     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPAAIATPTVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|148264946|ref|YP_001231652.1| pyruvate carboxylase [Geobacter uraniireducens Rf4]
 gi|146398446|gb|ABQ27079.1| pyruvate carboxylase [Geobacter uraniireducens Rf4]
          Length = 1148

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/156 (13%), Positives = 48/156 (30%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I      +        P +IK   GG   G+ V    + +   +  + S           
Sbjct: 143 IEHEEEALIFAKNYGYPIIIKAAAGGGGRGMRVANNRKELVEGIASARSEAKAAFGNAAV 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA-KIPLDIYKEVQR 229
           +++        +    L  +   +         ++          P+  I  ++ +E+  
Sbjct: 203 FLERYLENPKHIEVQVLGDSFGNLVHFFERDCSIQRRHQKVVEFAPSLCITPEMREELCA 262

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G R     +FL D      +++E+N +
Sbjct: 263 AALKIAGQVGYRNAGTVEFLLDQEGN-FYFIEMNPR 297


>gi|92114406|ref|YP_574334.1| acetyl-CoA carboxylase, biotin carboxylase [Chromohalobacter
           salexigens DSM 3043]
 gi|91797496|gb|ABE59635.1| acetyl-CoA carboxylase, biotin carboxylase [Chromohalobacter
           salexigens DSM 3043]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + S+   +  + +  +        Y++       
Sbjct: 150 AKRIGYPVIIKAAAGGGGRGMRVVHSEGSLLSSVSVTRNEANAAFGDGTLYMEKFLENPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L   +            L+          PA         +V +    A   I 
Sbjct: 210 HVEVQVLADGQGNAIHLYDRDCSLQRRHQKVLEEAPAPHLDPKARADVLQACVDACNEIN 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + F++E+N +
Sbjct: 270 YRGAGTFEFLY--ENGEFFFIEMNTR 293


>gi|73966720|ref|XP_867536.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 5 [Canis familiaris]
          Length = 2317

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              +     +      + +   +  P +IK  +GG   GI  +      P    Q  +  
Sbjct: 276 PQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEV 335

Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G  + + +       L   ++ D   +   +            +           A   
Sbjct: 336 PGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ----RRHQKIIEEAPAAIAT 391

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +++ +++ A    + +G       ++L+       ++LE+N +
Sbjct: 392 PAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELNPR 435


>gi|73966722|ref|XP_867544.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase alpha isoform 1
           isoform 6 [Canis familiaris]
          Length = 2318

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/165 (11%), Positives = 51/165 (30%), Gaps = 6/165 (3%)

Query: 102 SCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN 161
              +     +      + +   +  P +IK  +GG   GI  +      P    Q  +  
Sbjct: 277 PQELYEKGYVKDVDDGLKAAEEVGYPVMIKASEGGGGKGIRKVNNADDFPNLFRQVQAEV 336

Query: 162 HGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            G  + + +       L   ++ D   +   +            +           A   
Sbjct: 337 PGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ----RRHQKIIEEAPAAIAT 392

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             +++ +++ A    + +G       ++L+       ++LE+N +
Sbjct: 393 PAVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELNPR 436


>gi|58268320|ref|XP_571316.1| acetyl-CoA carboxylase [Cryptococcus neoformans var. neoformans
           JEC21]
 gi|57227551|gb|AAW44009.1| acetyl-CoA carboxylase, putative [Cryptococcus neoformans var.
           neoformans JEC21]
          Length = 2237

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++    I  P +IK  +GG   GI  ++  +         +    G  + I 
Sbjct: 222 CVHSWEEGLERAEKIGFPIMIKASEGGGGKGIRKVEDGEKFKNSFQAVAGEVPGSPIFIM 281

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +       L   ++ D   +   +            +                + ++E++
Sbjct: 282 KLAGSARHLEVQLIADQYGNAISLFGRDCSVQ----RRHQKIIEEAPVTIAKPETFEEME 337

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A    + +G       ++L+       ++LE+N +
Sbjct: 338 KAAVRLAKLVGYVSAGTVEYLYSHSDDSFYFLELNPR 374


>gi|15895918|ref|NP_349267.1| pyruvate carboxylase [Clostridium acetobutylicum ATCC 824]
 gi|15025689|gb|AAK80607.1|AE007763_6 Pyruvate carboxylase, PYKA [Clostridium acetobutylicum ATCC 824]
 gi|325510070|gb|ADZ21706.1| pyruvate carboxylase [Clostridium acetobutylicum EA 2018]
          Length = 1144

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 84/281 (29%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A  + G +   I                   + ++ G V A+L  D   N    
Sbjct: 17  AIRIFRACHELGIRTVAIYSEEDKLALFRTKADESYLIGQNKGPVDAYLNIDEIINLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK+ SK    + GV   P
Sbjct: 77  KGVDAIHPGYGFLSENSEFSRRCTEAGIEFIGPTGDMMDKLGDKINSKLAAKAAGVKTIP 136

Query: 110 SILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
            +     T       +     P ++K   GG   G+ +++K++ +      + S      
Sbjct: 137 GVEKPIETEQQAIEFARTCGYPVMVKAAAGGGGRGMRIVEKEEDLIAACRSAKSEAKKAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIY 224
            + + +++        +    L      +         ++        + P   +  +  
Sbjct: 197 GIEDIFIEKYLEGPKHIEVQVLGDKYGNIVHLYERDCSVQRRHQKVIELTPAVSMSEEKR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            E+   A    ++IG R     +FL D      +++E+N +
Sbjct: 257 LEICEDALKIARSIGYRSAGTLEFLLDKHGNH-YFIEMNPR 296


>gi|134113094|ref|XP_774823.1| hypothetical protein CNBF2520 [Cryptococcus neoformans var.
           neoformans B-3501A]
 gi|50257469|gb|EAL20176.1| hypothetical protein CNBF2520 [Cryptococcus neoformans var.
           neoformans B-3501A]
          Length = 2237

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 5/157 (3%)

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +      ++    I  P +IK  +GG   GI  ++  +         +    G  + I 
Sbjct: 222 CVHSWEEGLERAEKIGFPIMIKASEGGGGKGIRKVEDGEKFKNSFQAVAGEVPGSPIFIM 281

Query: 170 QYV-DGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
           +       L   ++ D   +   +            +                + ++E++
Sbjct: 282 KLAGSARHLEVQLIADQYGNAISLFGRDCSVQ----RRHQKIIEEAPVTIAKPETFEEME 337

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + A    + +G       ++L+       ++LE+N +
Sbjct: 338 KAAVRLAKLVGYVSAGTVEYLYSHSDDSFYFLELNPR 374


>gi|325068895|ref|ZP_08127568.1| putative ATP-grasp enzyme [Actinomyces oris K20]
          Length = 413

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 22/165 (13%), Positives = 46/165 (27%), Gaps = 13/165 (7%)

Query: 124 ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  P V K   G             I  I     +           +    L+++ + G 
Sbjct: 159 MEFPLVAKAAIGADYDRISFPGKRKIWFIDDAAELAGMWRSLKEAGYRSTFLVQECIPGD 218

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +     +        E+ +  S             +    P  +  + + ++        
Sbjct: 219 DTAMRSVTAYMDSTGELRLIGSARVL---LQDHAPTMIGNPVAMITEAFPDLWEATGRLL 275

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +  G RG +  D   DP   +  + E+N + G    S +   A  
Sbjct: 276 RHAGYRGFANLDIKVDPRDGRELFFEVNPRIG--RNSFYLTAAGA 318


>gi|257055680|ref|YP_003133512.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256585552|gb|ACU96685.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 666

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 6/143 (4%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWN---HGDQLLIEQYVDGIELTCGVM 182
            P ++K   GG   G+ V+    ++   +  + +      GD  +  +          + 
Sbjct: 144 FPVLVKASAGGGGRGMRVVHDRGALAEAVESARAEAGSAFGDPTVFCERYLERGRHVEIQ 203

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
             A    T       +      +             +   + + +   A    +A+   G
Sbjct: 204 VLADSHGT--VWALGERECSIQRRHQKVVEEAPSPAVDPALRERLCEAARTVARAVDYVG 261

Query: 243 ISRSDFLFDPLSRKVFWLEINVQ 265
               +FL  P   + F+LE+N +
Sbjct: 262 AGTVEFLVTP-DGEFFFLEMNTR 283


>gi|222151736|ref|YP_002560892.1| acetyl-CoA carboxylase, biotin carboxylase subunit homolog
           [Macrococcus caseolyticus JCSC5402]
 gi|222120861|dbj|BAH18196.1| acetyl-CoA carboxylase, biotin carboxylase subunit homolog
           [Macrococcus caseolyticus JCSC5402]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 42/251 (16%), Positives = 81/251 (32%), Gaps = 21/251 (8%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAFNVLH--------GNFGEDGLVQAILELLEIPYTHSG 83
           +   I    S    L       A  + H        G   E+     +    +I +    
Sbjct: 46  EAICIGPASSSESYLNMNNIIAAAEITHADAIHPGYGFLAENSKFARLCAEHDIIFIGPT 105

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSL 139
                   DK  +++ + + GVPV P     I       +    I  P VIK + GG   
Sbjct: 106 PETIDKMGDKAEARKTMIAAGVPVIPGSKDVIPTIEEAREKAREIGVPLVIKAVAGGGGK 165

Query: 140 GIIV---IKKDQSIPLDLLQSSSWNHGDQ--LLIEQYVDGIELTCGVMGDASLDVTEIAV 194
           G+ +    +   ++       +    GD    + +       +   V+GD   D   +  
Sbjct: 166 GMRIVSREEDFDNLFHAAKNEAKKAFGDDRVYIEKFIKTARHIEVQVIGDGHGDAVHLYD 225

Query: 195 PKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS 254
                     K        ++P     ++   +   A  A + I  RG    +FL+   +
Sbjct: 226 RDCSIQRNNQKLIEEAPAVIVPD----EVRARMTTDAVTAAKNISYRGAGTLEFLYVEET 281

Query: 255 RKVFWLEINVQ 265
           ++ ++LE+N +
Sbjct: 282 QEYYFLEMNTR 292


>gi|145640642|ref|ZP_01796225.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145274568|gb|EDK14431.1| acetyl-CoA carboxylase [Haemophilus influenzae 22.4-21]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVGNDITKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|145295731|ref|YP_001138552.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           glutamicum R]
 gi|140845651|dbj|BAF54650.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 1113

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/307 (13%), Positives = 95/307 (30%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI-------------------------DVDRSVGLVLAHLKP- 51
           SG      L++ G +V+ I                          +D+     +    P 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEMADHTYVEPIEPEYIDKIFAKEIEQGHPI 88

Query: 52  DLAFNVLHGNFGEDGLVQAI----LELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +  +Q      LE   +    + I A     D+ + K +V++ G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDRLGILEKYGVELIGADIDAIERGEDRQKFKDIVTTIGGES 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSRVCHNMEEVHETVAELGLPVVVRPSFTMGGLGSGLAYNTEDLERIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +   + D   +     +  +  +      +          +  K
Sbjct: 209 VLIEESILGWKEFELELMRDTADNVVVVCSIENVDALGVHTGDSVTVAPALTLTDREFQK 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P+  ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAIIREVGVDTGGCNIQFAINPVDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            ++   +
Sbjct: 325 AKMAAKL 331


>gi|160899191|ref|YP_001564773.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
 gi|160364775|gb|ABX36388.1| acetyl-CoA carboxylase, biotin carboxylase [Delftia acidovorans
           SPH-1]
          Length = 682

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 24/187 (12%), Positives = 53/187 (28%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D+          +           +++       
Sbjct: 148 AKGIGYPVMIKASAGGGGKGLRVAYNDKEAFEGFASCQNEARNSFGDDRIFIEKFVQEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V   +     ++          P+    D  +      A    +A+G
Sbjct: 208 HIEIQVLGDGHGNVIYLNERECSIQRRHQKVIEEAPSPFISDATRRAMGEQAVALAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+     +  ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFVV-GKDQDFYFLEMNTR----------LQVEHPVTECITGL---DLVEQMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|325832374|ref|ZP_08165348.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Eggerthella sp.
           HGA1]
 gi|325486010|gb|EGC88465.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Eggerthella sp.
           HGA1]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 79/251 (31%), Gaps = 23/251 (9%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVN 114
           +G   E+     +    +I +            +K ++++ +   GVPV P     +   
Sbjct: 82  YGFLSENSTFAKLCRENDIVFIGPAPEVLDRMGNKSQARKTMMEAGVPVVPGTKEPVHHP 141

Query: 115 RFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG 174
              +     I  P +IK   GG   G+ +   +         +   + G       Y++ 
Sbjct: 142 EEALAMAREIGWPIMIKASSGGGGKGMRISHDEHDFSEQFSIAQRESVGAFGDNTMYLER 201

Query: 175 IELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFL 233
             L    +    +  T   V         ++ +        P   +   +  E+   A  
Sbjct: 202 CVLNPRHVEVQIIADTYGTVVALGERDCSVQRNHQKMIEESPSPVMTGRVRDEMLEAAVR 261

Query: 234 AHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFREL 288
           A QA+G       +FL D      +++E+N       P         EM    G    +L
Sbjct: 262 AAQAVGYTSAGTIEFLLDDKLN-YYFMEMNTRIQVEHP-------VTEM--VTG---TDL 308

Query: 289 LLWMVEDASCL 299
           +  M+  A+  
Sbjct: 309 VEEMIRVAAGD 319


>gi|308049117|ref|YP_003912683.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
 gi|307631307|gb|ADN75609.1| alpha-L-glutamate ligase, RimK family [Ferrimonas balearica DSM
           9799]
          Length = 302

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 44/295 (14%), Positives = 85/295 (28%), Gaps = 28/295 (9%)

Query: 20  KACASALEDAGFKVSQIDVDRSVGLVLAHLKP------------DLAFNVLHGNFGEDGL 67
           +   +A E  G ++  I  DR   +V  HL P            D              L
Sbjct: 22  RRIVAAAEAKGIEIDVIRPDRLEMVVGEHLAPSLYLDQEPVALPDFVLPRQGATTSYFTL 81

Query: 68  VQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI--LVNRFTMDSQHLIS 125
                   +     +   A AL  DKM+S   ++  GVP+  ++       T +    + 
Sbjct: 82  SLLRFLAQQGVKVLNSADAIALCGDKMQSAIALAHQGVPMPAAMLARFPVDTDEVVRKMG 141

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P V+K   G    G+++++ +      +    + N   +++ +                
Sbjct: 142 MPVVLKTRSGSQGTGVMLMRNESQFKDMMQLMGNVNPKAEMMFQ-------RYVQSSHGR 194

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISR 245
            + V  +          +       +                     +    +    I+ 
Sbjct: 195 DIRVIVVGGKVISAMVRQAAEGEFKANVHAGGTTTPQELTPELVELSVRVATLLNLDIAG 254

Query: 246 SDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCLR 300
            DF            E N  PG          AA+   +  E+L+ +   A+C R
Sbjct: 255 LDF-LCGEDGHFLLCEANSSPGFKG-----MEAAHPELNMAEVLVEL-AIATCQR 302


>gi|258616258|ref|ZP_05714028.1| carbamoyl phosphate synthase large subunit [Enterococcus faecium
           DO]
          Length = 325

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 33/260 (12%), Positives = 81/260 (31%), Gaps = 26/260 (10%)

Query: 24  SALEDAGFKVSQ-------IDVDRSVGLVL--AHLKPDLAFNVLH------------GNF 62
            A++ AG++          +  D S+   L    L  +   NV+             G  
Sbjct: 71  KAIQQAGYEAIIMNSNPETVSTDFSISDKLYFEPLTFEDVMNVIELEQPIGVIVQFGGQT 130

Query: 63  GEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQH 122
             +         ++I  T    L  A + D             P+  +       +    
Sbjct: 131 AINLAEPLTAAGVKILGTTIEDLDRAENRDLFEQALKELDIPQPLGDTATSKEEAVVIAS 190

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P +++P        + +++  + +   +  +   +    +L+++Y+ G E     +
Sbjct: 191 RIGYPVLVRPSYVLGGRAMEIVENQRDLEDYMEHAVKASPEHPVLVDRYLLGGECEVDAI 250

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRG 242
            D    +    +   +       +S  +     P  +   I K ++         + C G
Sbjct: 251 CDGETVLIPGIMEHIERAG---VHSGDSMAVYPPQTLSESIKKTIEDYTIRLALGLNCVG 307

Query: 243 ISRSDFLFDPLSRKVFWLEI 262
           +    F+      +V+ +E+
Sbjct: 308 MMNIQFVIHE--NEVYVIEV 325


>gi|258406428|ref|YP_003199170.1| pyruvate carboxylase [Desulfohalobium retbaense DSM 5692]
 gi|257798655|gb|ACV69592.1| Carbamoyl-phosphate synthase L chain ATP- binding protein
           [Desulfohalobium retbaense DSM 5692]
          Length = 1229

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 37/236 (15%), Positives = 79/236 (33%), Gaps = 18/236 (7%)

Query: 47  AHLKPDLAFN--------VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           A+L  DL  N         +H   G   ED           + +         +  +K++
Sbjct: 71  AYLDIDLIINRAKARGVKAIHPGWGFASEDEAFPEKCRAAGLVFIGPPSRPMHILGNKVQ 130

Query: 96  SKQVVSSCGVPVCPS---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
            + +    GVPV P     +           I  P ++K   GG   GI  + +   +  
Sbjct: 131 VRNLAKEHGVPVVPGSDGAVSIDEARRIAEDIDFPIMLKAEGGGGGRGIYEVYQQSELER 190

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
              ++SS           YV+ +  +   +    +      V   D     ++ +     
Sbjct: 191 AFAKASSLAQASFGNPRLYVEKLLTSIRHIEIQVIADQHGNVFAFDERDCTVQRNHQKLV 250

Query: 213 HVLPAKIP---LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            + P+  P    ++ + ++  +     A+G   ++  +FL D      + +E+N +
Sbjct: 251 EITPSPWPVMTEELRERLKEYSRRLVSAVGYHSLATVEFLVDMEGN-PYLIEVNTR 305


>gi|213026594|ref|ZP_03341041.1| acetyl-CoA carboxylase biotin carboxylase subunit [Salmonella
           enterica subsp. enterica serovar Typhi str. 404ty]
          Length = 301

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/150 (15%), Positives = 54/150 (36%), Gaps = 11/150 (7%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ V++ D  +   +  + +     +++    + +   +  
Sbjct: 1   AKRIGYPVIIKASGGGGGRGMRVVRSDAELAQSISMTKAEAKAAFSNDMVYMEKYLENPR 60

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+ D   +   +A           +             I  ++ + +      A 
Sbjct: 61  HIEIQVLADGQGNAIYLAERDCSMQ----RRHQKVVEEAPAPGITPELRRYIGERCAKAC 116

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             IG RG    +FLF   + + +++E+N +
Sbjct: 117 VDIGYRGAGTFEFLF--ENGEFYFIEMNTR 144


>gi|172040649|ref|YP_001800363.1| carbamoyl phosphate synthase large subunit [Corynebacterium
           urealyticum DSM 7109]
 gi|171851953|emb|CAQ04929.1| carbamoyl-phosphate synthase large chain [Corynebacterium
           urealyticum DSM 7109]
          Length = 1110

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/307 (12%), Positives = 92/307 (29%), Gaps = 36/307 (11%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLVLAHLKP----------------- 51
           SG      L++ G +V+ I         D + +    +  ++P                 
Sbjct: 29  SGTQACRVLKEEGLRVTLINSNPATIMTDPEFADHTYIEPIQPEYIEKIFAKEKAAGHPI 88

Query: 52  DLAFNVLHGNFGEDG----LVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPV 107
           D     L G    +       + IL+   +    + I A     D+ + K +V   G   
Sbjct: 89  DAVLATLGGQTALNAAIQLDRRGILDKYGVELIGADIDAIERGEDRQKFKDIVEKIGGSS 148

Query: 108 CPSILVNRFTMDSQH--LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
             S + +      +    +  P V++P      LG  +    + +        + +    
Sbjct: 149 ARSRVCHNMDEVHETVAELGLPVVVRPSFTMGGLGSGLAFDYEDLDRIAGGGLAASPEAN 208

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
           +LIE+ + G +     +     D   +     +  +  +      +          +   
Sbjct: 209 VLIEESILGWKEFELELMRDGKDNVVVVASIENVDALGVHTGDSVTVAPSMTLTDREFQI 268

Query: 226 EVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSF 285
              +   +  +     G     F  +P   ++  +E+N  P ++  S     +   G+  
Sbjct: 269 MRDQGIAILREVGVETGGCNIQFAINPKDGRIITIEMN--PRVSRSS--ALASKATGFPI 324

Query: 286 RELLLWM 292
            +L   +
Sbjct: 325 AKLAAKL 331


>gi|320534419|ref|ZP_08034901.1| hypothetical protein HMPREF9057_02797 [Actinomyces sp. oral taxon
           171 str. F0337]
 gi|320133366|gb|EFW25832.1| hypothetical protein HMPREF9057_02797 [Actinomyces sp. oral taxon
           171 str. F0337]
          Length = 415

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 23/165 (13%), Positives = 47/165 (28%), Gaps = 13/165 (7%)

Query: 124 ISPPYVIKPLKGG--------SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGI 175
           +  P V K   G             I  I     +           +    L+++ + G 
Sbjct: 161 LEFPLVAKAAIGADYDRISFPGKRKIWFIDDAAELAGMWRSLKEAGYRSTFLVQECIPGD 220

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
           +     +        E+ +  S             +    P  +  + + ++   A    
Sbjct: 221 DTAMRSVTVYMDSTGELRLIGSARVL---LQDHAPTMIGNPVAMITEAFPDLWNAAGRLL 277

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY 280
           +  G RG +  D   DP   +  + E+N + G    S +   A  
Sbjct: 278 RHAGYRGFANLDIKVDPRDGRELFFEVNPRIG--RNSFYLTAAGA 320


>gi|254933939|gb|ACT87578.1| carbamoylphosphate synthetase [Argyrotaenia alisellana]
          Length = 975

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     + E   +    + I +   + D+     K       V    +
Sbjct: 435 TFGGQTALNCGVELQKSKVFEKYNVQVLGTPIQSIIDTEDRKIFAEKINAIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 495 VSSVDDAVNAALQIGYPVMARAAFSLGGLGSGFANNEEELRN--LAHQAFSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 ALKVIRHFGIVGECNIQYALNPSSEQFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|268609164|ref|ZP_06142891.1| biotin carboxylase [Ruminococcus flavefaciens FD-1]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 45/146 (30%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
                 P +IK   GG   GI  +     +   ++ +             YV+   +   
Sbjct: 148 ADKAGYPVLIKASAGGGGRGIRRVDSPAELEAQMIAAQQEAKNFFGDDTVYVEKFLINPH 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP-AKIPLDIYKEVQRLAFLAHQAIG 239
            +    +                ++  +       P   +  ++  ++   A  A +  G
Sbjct: 208 HVEIQIIADKHGNYIHLCERDCSMQRRNQKVLEECPSPIVSPELRAKMGNAAITAAKECG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL D  +R  +++E+N +
Sbjct: 268 YYNAGTIEFLVDE-NRDFYFMEMNTR 292


>gi|89053638|ref|YP_509089.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Jannaschia sp.
           CCS1]
 gi|88863187|gb|ABD54064.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Jannaschia sp.
           CCS1]
          Length = 667

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/154 (16%), Positives = 56/154 (36%), Gaps = 14/154 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK + GG   G+  + + Q     L  +       + +   L+ +      
Sbjct: 171 AAEVGYPVLIKAVAGGGGKGMRRVDQAQDFEEALASAQGEAGTAFGNDAVLIEKFVATPR 230

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD +  V       S    ++       +  + P     ++   + + A  A 
Sbjct: 231 HIEVQVFGDGTRAVHLFERDCSLQRRHQKVIEEAPAPGMTP-----EMRAAMGQAAVRAA 285

Query: 236 QAIGCRGISRSDFLFDPLSR----KVFWLEINVQ 265
           +AIG +G    +F+ D        + +++E+N +
Sbjct: 286 EAIGYKGAGTVEFIVDATDGLRADRFYFMEMNTR 319


>gi|34398197|gb|AAQ67188.1| CAD [Opetia nigra]
          Length = 1286

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQAIKAMKEEKIQTILINPNIATVQTSNGLADNVYFLPLTADYVEQVIKAERPSGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +     +     +    + I +   + D+     +       V    +
Sbjct: 435 TFGGQTALNCGVELERAGVFARYNVKILGTPIQSIIETEDRKLFAERVNEIGERVAPSEA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + +   +  P + +       LG       + +    L  ++  H  QL+I++
Sbjct: 495 VVSVAEALLAAERLGYPVMARAAFSLGGLGSGFANNREEL--AYLAENALAHSSQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   + +     ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAFDNCITVCNMENFDPLGIHTGESIVVAPSQTLSNREYNMLRTT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 612 AIKVIRHFGVIGECNIQYALNPHSEEFFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|332678797|gb|AEE87926.1| hypothetical protein FNFX1_1540 [Francisella cf. novicida Fx1]
          Length = 407

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/236 (16%), Positives = 78/236 (33%), Gaps = 21/236 (8%)

Query: 34  SQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDK 93
           + IDV +     L  L  D           ED +  A   + +I    +    S    +K
Sbjct: 67  TAIDVTK-----LTQLNIDYVI-----CGYEDSVAIADYLMQQITNYSNDTNTSEYRNNK 116

Query: 94  MRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
               QV+ +  +      ++N   + S H  + P  IKPL G +S+G  ++     +   
Sbjct: 117 YLMHQVLKNNQLNYLKQEIINFKNIKSSH-FNYPCFIKPLDGSASVGAAILNSQAELVDY 175

Query: 154 LLQSSSWNHGDQL---LIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLN 210
           + +      G      +I +Y+ G+E   G                         +  + 
Sbjct: 176 IKKDFYSPVGRNYSEFIISEYIKGVEYAVGTFSKDGEHYVSSVQKYVTKI-----HHGVP 230

Query: 211 STHVLPAKIPLDIYKEVQRLAFLAHQAIGCR-GISRSDFLFDPLSRKVFWLEINVQ 265
                  +   +I  +V   A +    +G R G + ++      +     +E+N +
Sbjct: 231 VILSFELENNKEIIAKVTEYAKIVLTKLGIRNGFAHTEIFLTAENN-PVLIEVNPR 285


>gi|332243034|ref|XP_003270687.1| PREDICTED: LOW QUALITY PROTEIN: CAD protein-like [Nomascus
           leucogenys]
          Length = 2225

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/310 (12%), Positives = 84/310 (27%), Gaps = 45/310 (14%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 415 SGSQAIKALKEENIQTLLINPNIATVQTSQGLADKVYFLPITPHYVTQVIRNERPDGVLL 474

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     +L    +    + +    L+ D+     +       V    +
Sbjct: 475 TFGGQTALNCGVELTKAGVLARYGVRVLGTPVETIELTEDRRAFAARMAEIGEHVAPSEA 534

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                        +  P +++       LG       + +   +  + +        +  
Sbjct: 535 ANSLEQVGGVCXRLGYPVLVRAAFALGGLGSGFASNREELSALVAPAFAHT----SQVLV 590

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
                                     +      L   +  S  V P++   D  Y+ +++
Sbjct: 591 DKSLKGWKEIEYEVVRDAYGNCVTVCNMENLDPLGIHTGESIVVAPSQTLNDREYQLLRQ 650

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS-------IFPEMAAYA- 281
            A    Q +G  G     +  +P S + + +E+N +  ++  S        +P     A 
Sbjct: 651 TAIKVTQHLGIVGECNVQYALNPESEQYYIIEVNAR--LSRSSALASKATGYPLAYVAAK 708

Query: 282 ---GYSFREL 288
              G    EL
Sbjct: 709 LALGIPLPEL 718


>gi|330808602|ref|YP_004353064.1| biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327376710|gb|AEA68060.1| Putative biotin carboxylase [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 649

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   L   
Sbjct: 152 AEHIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREAQSSFGDSRMLVEKYLLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA      + + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLTPQLRQAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|299146014|ref|ZP_07039082.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_23]
 gi|298516505|gb|EFI40386.1| phosphoribosylglycinamide formyltransferase 2 [Bacteroides sp.
           3_1_23]
          Length = 388

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 36/244 (14%), Positives = 73/244 (29%), Gaps = 14/244 (5%)

Query: 32  KVSQIDV--DRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASAL 89
           +    D+     +  V+    PD+    +      + L     E +++  +   +  +  
Sbjct: 44  EFEIFDMLNGEELERVVKKHHPDIIVPEIE-AIRTERLYDFEKEGIQVVPSARAVNFTMN 102

Query: 90  SMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQS 149
                                        ++   I  P V+KPL   S  G  ++K    
Sbjct: 103 RKAIRDLAAQELGLKTAKYFYAKTLEELKEAADKIGFPCVVKPLMSSSGKGQSLVKSADE 162

Query: 150 IPLDLLQSSSWNHGD--QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYS 207
           +        S + GD  +L+IE+++        +        T    P            
Sbjct: 163 LEHAWEYGCSGSRGDIRELIIEEFIKFDSEITLLTVTQKNGPTLFCPPIGHVQKGGDYRE 222

Query: 208 SLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP- 266
           S    H+ PA +           A    +A+   G+   +F        V++ E++ +P 
Sbjct: 223 SFQPAHIDPAHLKEAEEM-----AEKVTRALTGAGLWGVEFFLS-HDNGVYFSELSPRPH 276

Query: 267 --GM 268
             GM
Sbjct: 277 DTGM 280


>gi|293977837|ref|YP_003543267.1| carbamoyl-phosphate synthase large subunit [Candidatus Sulcia
           muelleri DMIN]
 gi|292667768|gb|ADE35403.1| carbamoyl-phosphate synthase large subunit [Candidatus Sulcia
           muelleri DMIN]
          Length = 1062

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 92/296 (31%), Gaps = 34/296 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++       ++ +                       V  ++   KP   F 
Sbjct: 25  SGTQALKALKEENLFTILVNPNIATVQTSEKIADKIYSLPITPFFVEKIIKKEKPQGIFI 84

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSI- 111
              G      G +     + +   +    + I     S D+   +Q++ + G+ +  SI 
Sbjct: 85  SFGGQTALNCGIELYNSGVFKKNNVKVLGTPISYIIKSEDRDIFRQMLINRGINLAKSIA 144

Query: 112 -LVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                  +D+ + I  P +I+       LG  + K    +    + S + ++  Q+LIE+
Sbjct: 145 VNSVSEAIDASNEIVFPLIIRSAYALGGLGSGLAKNVYELKK--ISSVALSYSSQILIEE 202

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D         +     +                ++ Y +++ +
Sbjct: 203 SLKGWKEIEYEVVRDIYDNCITVCNMENIDPIGIHTGDSIVVAPSQTLNNIE-YNKLRFI 261

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFR 286
           A    +     G     F     S K   +EIN +  ++  S     +   GY   
Sbjct: 262 AIKIARYFNIIGECNVQFALSNNSYKYNVIEINAR--LSRSS--ALASKATGYPLA 313



 Score = 37.9 bits (86), Expect = 1.7,   Method: Composition-based stats.
 Identities = 43/321 (13%), Positives = 108/321 (33%), Gaps = 44/321 (13%)

Query: 3   VLMG------GISSERE---VSLSSGKACASALEDAGFKVSQIDVDRS------------ 41
           V++G      G S E +   VS          L+  G++   I+ +              
Sbjct: 562 VILGSGVYRIGSSVEFDWCCVS------VLDFLKKEGYRSVIINYNPETVSTDFDVCDRL 615

Query: 42  ---------VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMD 92
                    V  ++    P+     + G    +  +    + ++I  T    +       
Sbjct: 616 YFEELSLERVLDIIELENPEGTVISMGGQITNNLSLNLYKKKVKILGTSPINIDEVEDRY 675

Query: 93  KMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL 152
           K            P    +       +   L+  P +I+P    S   + ++    ++ L
Sbjct: 676 KFSKFLDKLDILQPKWKELSNISDVYNFIKLVGFPIIIRPSYVLSGAAMNIVFDKSNLDL 735

Query: 153 DLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNST 212
            L Q+ + +H   ++I ++++  +         +  +   A+   +   Y   +S   + 
Sbjct: 736 CLKQAKTISHKYPIVITKFIENAKEIELDAVANNGKIIYDAIS--EHIEYAGVHSGDATL 793

Query: 213 HVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVS 272
                 I L+  K+++ ++    +     G     FL+   ++K+  +E N    +    
Sbjct: 794 VYPTQNISLNTIKKIKNISKKISKRFNISGPFNIQFLY--KNKKIQVIECN----LRASR 847

Query: 273 IFPEMAAYAGYSFRELLLWMV 293
            FP ++  + ++  EL + ++
Sbjct: 848 SFPFISKVSHFNMVELAMKVL 868


>gi|218893942|ref|YP_002442811.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           aeruginosa LESB58]
 gi|218774170|emb|CAW29987.1| biotin carboxylase [Pseudomonas aeruginosa LESB58]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 45/146 (30%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+  +  +      + +           Y +       
Sbjct: 149 AREVGYPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGNPMVYPEKFLTNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L   +            L+          PA    +  ++        A   IG
Sbjct: 209 HVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIEEAPAPGIDEKARQEVFARCVQACIEIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 269 YRGAGTFEFLY--ENGRFYFIEMNTR 292


>gi|298208832|ref|YP_003717011.1| biotin carboxylase (accC) [Croceibacter atlanticus HTCC2559]
 gi|83848759|gb|EAP86628.1| biotin carboxylase (accC) [Croceibacter atlanticus HTCC2559]
          Length = 480

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 35/229 (15%), Positives = 76/229 (33%), Gaps = 7/229 (3%)

Query: 42  VGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVS 101
           +      L  D      +G   E+      ++   I +      A  +   K+ +K+ V 
Sbjct: 65  IIEKAKALNVDAIHPG-YGFLSENAGFAKKVKESGIVWIGPDTHAIEVMGSKLAAKEAVK 123

Query: 102 SCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQS 157
           S  +P+ P I      +D        I  P +IK   GG   G+ V++K+  +   + ++
Sbjct: 124 SYDIPMVPGIDEAIEDVDKATSIAKEIGFPILIKASAGGGGKGMRVVEKETELESQMKRA 183

Query: 158 SSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPA 217
            S           +++    +   +    L                ++          P+
Sbjct: 184 ISEAKSAFGDGSVFIEKYIASPRHIEIQVLADKHGNTVHLFERECSIQRRHQKVVEEAPS 243

Query: 218 KIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  + + + +   A    +A    G    +FL D      ++LE+N +
Sbjct: 244 SVLSETLRENMGAAAVRVAKACDYVGAGTVEFLID-DDHNFYFLEMNTR 291


>gi|269203232|ref|YP_003282501.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus ED98]
 gi|262075522|gb|ACY11495.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus ED98]
          Length = 453

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|187234415|gb|ACD01446.1| carbamoylphosphate synthetase/aspartate
           transcarbamylase/dihydroorotase [Aellopos ceculus]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSXIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       +G      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVDEALAAAMQIGYPVMARSAFSLGGMGSGFANNEEELRT--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPYSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|115380650|ref|ZP_01467584.1| pyruvate carboxylase subunit A [Stigmatella aurantiaca DW4/3-1]
 gi|115362342|gb|EAU61643.1| pyruvate carboxylase subunit A [Stigmatella aurantiaca DW4/3-1]
          Length = 484

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V   +  V  H   D      +G   E+       E   I +      A     +K R++
Sbjct: 45  VQERILEVARHAGADAIHPG-YGFLSENASFVRACEKAGITFIGPPASAMDAMGEKTRAR 103

Query: 98  QVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           Q +   GVPV P       T +        I  P ++K   GG   G+  ++K +     
Sbjct: 104 QNMIQAGVPVVPGTTEPIATQEEALAYAQKIGFPVMLKAAGGGGGKGMRKVEKTEEFDSA 163

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              + S           Y++        +                      +        
Sbjct: 164 WRSAKSEALNAFGNDAVYIEKYLDKPHHVEIQVFADQYGTTVHLGERECSAQRRHQKVVE 223

Query: 214 VLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P+ I   ++  ++  +A  A +A+   G    +FL D      ++LE+N +
Sbjct: 224 ETPSPILTPELRAQMGEVAVKAAKAVNYVGAGTVEFLVDAHRN-FYFLEMNTR 275


>gi|15924596|ref|NP_372130.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|15927186|ref|NP_374719.1| hypothetical protein SA1434 [Staphylococcus aureus subsp. aureus
           N315]
 gi|57651997|ref|YP_186501.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus COL]
 gi|87160781|ref|YP_494258.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|88195415|ref|YP_500219.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus NCTC 8325]
 gi|148268087|ref|YP_001247030.1| carbamoyl-phosphate synthase L chain, ATP-binding [Staphylococcus
           aureus subsp. aureus JH9]
 gi|150394155|ref|YP_001316830.1| carbamoyl-phosphate synthase L chain ATP-binding [Staphylococcus
           aureus subsp. aureus JH1]
 gi|151221719|ref|YP_001332541.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156979924|ref|YP_001442183.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|161509833|ref|YP_001575492.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|221141124|ref|ZP_03565617.1| biotin carboxylase [Staphylococcus aureus subsp. aureus str.
           JKD6009]
 gi|253315236|ref|ZP_04838449.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus str. CF-Marseille]
 gi|253732261|ref|ZP_04866426.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|255006391|ref|ZP_05144992.2| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus Mu50-omega]
 gi|257793681|ref|ZP_05642660.1| acetyl-CoA carboxylase [Staphylococcus aureus A9781]
 gi|258411020|ref|ZP_05681300.1| biotin carboxylase [Staphylococcus aureus A9763]
 gi|258420178|ref|ZP_05683133.1| biotin carboxylase [Staphylococcus aureus A9719]
 gi|258438180|ref|ZP_05689464.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A9299]
 gi|258443643|ref|ZP_05691982.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A8115]
 gi|258446850|ref|ZP_05695004.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A6300]
 gi|258448764|ref|ZP_05696876.1| carbamoyl-phosphate synthase subunit L [Staphylococcus aureus
           A6224]
 gi|258450567|ref|ZP_05698629.1| acetyl-CoA carboxylase [Staphylococcus aureus A5948]
 gi|258453583|ref|ZP_05701561.1| acetyl-CoA carboxylase [Staphylococcus aureus A5937]
 gi|262048602|ref|ZP_06021485.1| hypothetical protein SAD30_0998 [Staphylococcus aureus D30]
 gi|282893109|ref|ZP_06301343.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A8117]
 gi|282920153|ref|ZP_06327878.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A9765]
 gi|284024663|ref|ZP_06379061.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus 132]
 gi|295406728|ref|ZP_06816533.1| accC [Staphylococcus aureus A8819]
 gi|296277072|ref|ZP_06859579.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus MR1]
 gi|297245690|ref|ZP_06929555.1| accC [Staphylococcus aureus A8796]
 gi|304380797|ref|ZP_07363464.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|13701404|dbj|BAB42698.1| SA1434 [Staphylococcus aureus subsp. aureus N315]
 gi|14247377|dbj|BAB57768.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu50]
 gi|57286183|gb|AAW38277.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus COL]
 gi|87126755|gb|ABD21269.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus USA300_FPR3757]
 gi|87202973|gb|ABD30783.1| acetyl-CoA carboxylase, biotin carboxylase, putative
           [Staphylococcus aureus subsp. aureus NCTC 8325]
 gi|147741156|gb|ABQ49454.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Staphylococcus
           aureus subsp. aureus JH9]
 gi|149946607|gb|ABR52543.1| Carbamoyl-phosphate synthase L chain ATP-binding [Staphylococcus
           aureus subsp. aureus JH1]
 gi|150374519|dbj|BAF67779.1| acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp. aureus
           str. Newman]
 gi|156722059|dbj|BAF78476.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus Mu3]
 gi|160368642|gb|ABX29613.1| biotin carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH1516]
 gi|253724050|gb|EES92779.1| acetyl-CoA carboxylase [Staphylococcus aureus subsp. aureus
           USA300_TCH959]
 gi|257787653|gb|EEV25993.1| acetyl-CoA carboxylase [Staphylococcus aureus A9781]
 gi|257840170|gb|EEV64634.1| biotin carboxylase [Staphylococcus aureus A9763]
 gi|257843889|gb|EEV68283.1| biotin carboxylase [Staphylococcus aureus A9719]
 gi|257848224|gb|EEV72215.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A9299]
 gi|257851049|gb|EEV74992.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A8115]
 gi|257854425|gb|EEV77374.1| carbamoyl-phosphate synthase subunit L ATP-binding [Staphylococcus
           aureus A6300]
 gi|257858042|gb|EEV80931.1| carbamoyl-phosphate synthase subunit L [Staphylococcus aureus
           A6224]
 gi|257861725|gb|EEV84524.1| acetyl-CoA carboxylase [Staphylococcus aureus A5948]
 gi|257864314|gb|EEV87064.1| acetyl-CoA carboxylase [Staphylococcus aureus A5937]
 gi|259163249|gb|EEW47808.1| hypothetical protein SAD30_0998 [Staphylococcus aureus D30]
 gi|269941092|emb|CBI49478.1| putative biotin carboxylase subunit ofacetyl-CoA carboxylase
           [Staphylococcus aureus subsp. aureus TW20]
 gi|282594501|gb|EFB99486.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A9765]
 gi|282764427|gb|EFC04553.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus A8117]
 gi|285817288|gb|ADC37775.1| putative biotin carboxylase subunit of acetyl-CoA carboxylase
           [Staphylococcus aureus 04-02981]
 gi|294968475|gb|EFG44499.1| accC [Staphylococcus aureus A8819]
 gi|297177341|gb|EFH36593.1| accC [Staphylococcus aureus A8796]
 gi|302751435|gb|ADL65612.1| acetyl-CoA carboxylase biotin carboxylase subunit, AccC_1
           [Staphylococcus aureus subsp. aureus str. JKD6008]
 gi|304340673|gb|EFM06606.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312829993|emb|CBX34835.1| biotin carboxylase (Acetyl-CoA carboxylase subunit A) (ACC)
           [Staphylococcus aureus subsp. aureus ECT-R 2]
 gi|315129887|gb|EFT85877.1| biotin carboxylase [Staphylococcus aureus subsp. aureus CGS03]
 gi|315198697|gb|EFU29025.1| biotin carboxylase [Staphylococcus aureus subsp. aureus CGS01]
 gi|320140508|gb|EFW32362.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Staphylococcus aureus subsp. aureus MRSA131]
 gi|320144046|gb|EFW35815.1| phosphoribosylglycinamide synthetase, ATP-grasp domain protein
           [Staphylococcus aureus subsp. aureus MRSA177]
 gi|329314281|gb|AEB88694.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Staphylococcus aureus subsp. aureus T0131]
 gi|329728463|gb|EGG64900.1| putative acetyl-CoA carboxylase, biotin carboxylase subunit
           [Staphylococcus aureus subsp. aureus 21189]
          Length = 453

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|242373286|ref|ZP_04818860.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis M23864:W1]
 gi|242348996|gb|EES40598.1| phosphoribosylaminoimidazole carboxylase ATPase subunit
           [Staphylococcus epidermidis M23864:W1]
          Length = 375

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 50/263 (19%), Positives = 94/263 (35%), Gaps = 26/263 (9%)

Query: 19  GKACASALEDAGFKVSQIDVDRS-----VGLVLAHLKPDL--AFNVLHGNF------GED 65
           GK  A + +  G+KV  +D +       V     H + D   A N L           E+
Sbjct: 21  GKMMAQSAQKMGYKVIVLDPNEDSPCRYVAHQFIHAEYDDEQALNELGEKTDVITYEFEN 80

Query: 66  GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSS--CGVPVCPSILVNRFTMDSQHL 123
              + + +L E      G  A  L  D++  KQ +      +     I  ++    +   
Sbjct: 81  ISSKQLKQLTEHYNVPQGFQAIQLLQDRLTEKQTLQEAGAQIVPFLQIKNSQDLTQAIET 140

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMG 183
           +  P+++K   GG      ++ K +S   D+ ++ S     + + EQY+D       +  
Sbjct: 141 LGYPFIVKTRFGGYDGKGQILVKQES---DIQEAMSLIENQECVAEQYLD-------IDK 190

Query: 184 DASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGI 243
           + SL VT     ++ ++  +                  D  KE ++        I   G 
Sbjct: 191 EVSLTVTIGNEQQTTYFPLQENEHRNQILFKTIVPARTDKEKEARKEIDKITNVIHFVGT 250

Query: 244 SRSDFLFDPLSRKVFWLEINVQP 266
              +F  D  + K++  EI  +P
Sbjct: 251 FTVEFFID-RNNKLYVNEIAPRP 272


>gi|242309963|ref|ZP_04809118.1| biotin carboxylase [Helicobacter pullorum MIT 98-5489]
 gi|239523260|gb|EEQ63126.1| biotin carboxylase [Helicobacter pullorum MIT 98-5489]
          Length = 454

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 40/221 (18%), Positives = 72/221 (32%), Gaps = 11/221 (4%)

Query: 52  DLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS- 110
           D  F   +G   E+     I +   I +        AL  DK ++K+V+ + GVPV P  
Sbjct: 80  DAIFPG-YGFLSENQNFVEICKYHNIEFIGPNSEVMALMSDKSKAKEVMKNAGVPVIPGS 138

Query: 111 ---ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV---IKKDQSIPLDLLQSSSWNHGD 164
              I      +     I  P ++K   GG   G+ +    +   +  L     +    GD
Sbjct: 139 DGAIKSKEEALKLAKEIGYPVILKAAAGGGGRGMRIVQSEENMFNAYLAAESEAISAFGD 198

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             +  +          V   A        +   +      +             +     
Sbjct: 199 GTIYMEKFIDKPKHIEVQILADKHG--NVLHIGERDCSLQRRHQKLIEESPAPTLEPHTR 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           K++   A  A +AI   G    +FL D      +++E+N +
Sbjct: 257 KKLLETAIQATKAIKYVGAGTYEFLLDNEQN-FYFMEMNTR 296


>gi|116492050|ref|YP_803785.1| pyruvate carboxylase [Pediococcus pentosaceus ATCC 25745]
 gi|116102200|gb|ABJ67343.1| Pyruvate carboxylase [Pediococcus pentosaceus ATCC 25745]
          Length = 1141

 Score = 44.9 bits (104), Expect = 0.015,   Method: Composition-based stats.
 Identities = 28/231 (12%), Positives = 73/231 (31%), Gaps = 8/231 (3%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             +  +      D      +G   E+ +    +E   I +         +  DK+++K  
Sbjct: 64  DDIIRIAKENNIDAIHPG-YGFLSENAVFARAVEAAGIKFIGPRPELLEMFGDKLQAKNA 122

Query: 100 VSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLL 155
               GVP  P     +      ++       P  +K   GG   G+ ++   Q +     
Sbjct: 123 AIKAGVPTIPGTEKPVKDVDDALNFAEQFGYPIFVKSAAGGGGKGMRIVHHQQEMREAFK 182

Query: 156 QSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVL 215
            + S         E Y++   +    +    +      +      +  ++          
Sbjct: 183 MAQSEASSSFGDDEIYLERYLVDPIHIEVQVVADEHGEMVHLYERNSSIQRRHQKIIEFA 242

Query: 216 PAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           PA      +  ++++ A    +++     +  +FL      + +++E+N +
Sbjct: 243 PAVGISATVRDQIRKAALKLLKSVDYSNAATIEFLV--EGNQFYFMEVNPR 291


>gi|326931589|ref|XP_003211910.1| PREDICTED: acetyl-CoA carboxylase-like, partial [Meleagris
           gallopavo]
          Length = 1718

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      + ++ + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 327 LRVDWQENDLQKRILNVPQELYEKGYVKDADDGLRAAEEVGYPVMIKASEGGGGKGIRKV 386

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 387 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 443

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           +     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 444 -RRHQKIIEEAPASIATSVVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 501

Query: 264 VQ 265
            +
Sbjct: 502 PR 503


>gi|294848635|ref|ZP_06789381.1| accC [Staphylococcus aureus A9754]
 gi|294824661|gb|EFG41084.1| accC [Staphylococcus aureus A9754]
          Length = 453

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 77/275 (28%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQIIGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +       +    I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIENLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|271500954|ref|YP_003333979.1| carbamoyl-phosphate synthase ATP-binding protein [Dickeya dadantii
           Ech586]
 gi|270344509|gb|ACZ77274.1| Carbamoyl-phosphate synthase L chain ATP-binding protein [Dickeya
           dadantii Ech586]
          Length = 462

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/182 (18%), Positives = 61/182 (33%), Gaps = 17/182 (9%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V+  +  +  +L  + S         + Y++       
Sbjct: 150 ATEIGYPLLIKAAAGGGGRGIRVVNNEDDLKRELPIAQSEAKAAFGCGDVYLELFIRHAR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L   E AV   +      +           + +  +    + R A    Q +  
Sbjct: 210 HIEVQILGDGERAVHLYERECSLQRRRQKVFEEAPSSALSPEQRDALCRSALQLAQQLRY 269

Query: 241 RGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYSFRELLLWMVED 295
           R     ++LFD    + +++E+N       P +T            G    +L+ WM+  
Sbjct: 270 RSAGTLEYLFDTEREQFYFIEMNTRIQVEHP-VTE--------RVTGV---DLVQWMLRI 317

Query: 296 AS 297
           AS
Sbjct: 318 AS 319


>gi|253995528|ref|YP_003047592.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera mobilis
           JLW8]
 gi|253982207|gb|ACT47065.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera mobilis
           JLW8]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 48/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V+  + ++   +  + +           Y++       
Sbjct: 151 AKQIGYPVIIKAAGGGGGRGMRVVHTEAALLTSVNMTKAEAQAAFGNPMVYMEKYLEKPR 210

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L                ++          PA +    +  ++      A + I 
Sbjct: 211 HIEIQVLADQHGNAVFLGERDCSMQRRHQKILEEAPAPLLNARLRDKIGERCAEACRKIK 270

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+   + + +++E+N +
Sbjct: 271 YRGAGTFEFLY--ENGEFYFIEMNTR 294


>gi|194757505|ref|XP_001961005.1| GF11223 [Drosophila ananassae]
 gi|190622303|gb|EDV37827.1| GF11223 [Drosophila ananassae]
          Length = 2479

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/145 (15%), Positives = 54/145 (37%), Gaps = 6/145 (4%)

Query: 122 HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCG 180
           + I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   
Sbjct: 436 NKIGFPVMIKASEGGGGKGIRRVDTAEEFPALFRQVQAEVPGSPIFVMKLARGARHLEVQ 495

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           ++ D   +   +            +                ++++++++ A    + +G 
Sbjct: 496 LLADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGY 551

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++L+DP   + F+LE+N +
Sbjct: 552 VSAGTVEYLYDPE-GRYFFLELNPR 575


>gi|163760729|ref|ZP_02167809.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Hoeflea
           phototrophica DFL-43]
 gi|162282051|gb|EDQ32342.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein [Hoeflea
           phototrophica DFL-43]
          Length = 668

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/188 (15%), Positives = 56/188 (29%), Gaps = 24/188 (12%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   G+  +++ +  P  L  +              V+    T  
Sbjct: 150 ANEIGFPVLIKARAGGGGKGMRKVERQEDFPAALSSARREAKASFGDDRVLVEKYVATPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +       +   V          +          PA    +  + V    A  A +AI 
Sbjct: 210 HIEIQVFGDSHGNVVHLFERDCSAQRRHQKVIEEAPAPEMPEDMRTVMGAAAVKAARAIN 269

Query: 240 CRGISRSDFLFDPLSR----KVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
             G    +F+ D        K +++E+N +              +       G    +L+
Sbjct: 270 YCGAGTVEFIVDASDGLCADKFWFMEMNTR----------LQVEHPVTELITGL---DLV 316

Query: 290 LWMVEDAS 297
            W +  A+
Sbjct: 317 EWQIRVAA 324


>gi|217972704|ref|YP_002357455.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS223]
 gi|217497839|gb|ACK46032.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS223]
          Length = 685

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 158 ALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREASSSFGNDKLLMERYLRQPR 217

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA    D +  ++   A  A +AI 
Sbjct: 218 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGDAAVAAAKAID 277

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 278 YVGAGTVEFLLDT-DNSFYFMEMNTR 302


>gi|167034661|ref|YP_001669892.1| carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida GB-1]
 gi|166861149|gb|ABY99556.1| Carbamoyl-phosphate synthase L chain ATP-binding [Pseudomonas
           putida GB-1]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDSRMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|10567274|dbj|BAB16297.1| acetyl-CoA carboxylase biotin carboxylase subunit [Myxococcus
           xanthus]
          Length = 573

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/217 (16%), Positives = 73/217 (33%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            +H   G   E+           + +      A  L  +K ++   + + GVP  P    
Sbjct: 79  AIHPGYGFLSENADFARACRDAGLVFIGPEAEAITLMGNKRQANVRMIAAGVPCIPGYEA 138

Query: 114 NRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           +    ++       I  P ++K   GG   G+ ++ +   +   L  + S         E
Sbjct: 139 SDLDDEALAVEGERIGFPLMVKAAAGGGGRGMRLVHEASQLRAALRAARSEATNAFGSGE 198

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQ 228
             ++   +    +       T   V         ++          P+  +   +   + 
Sbjct: 199 LILEKAVIDARHVEVQVFADTHGNVVHLGERDCSVQRRHQKIVEESPSPAVSPALRARMG 258

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +A  A +AIG RG    +FL  P S   +++E+N +
Sbjct: 259 EVAVAAARAIGYRGAGTIEFLLAP-SGDFYFMEMNTR 294


>gi|321475694|gb|EFX86656.1| hypothetical protein DAPPUDRAFT_222043 [Daphnia pulex]
          Length = 2342

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 48/146 (32%), Gaps = 6/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYV-DGIELTC 179
              I  P +IK  +GG   GI   +          Q  +   G  + I +       L  
Sbjct: 308 AQRIGFPVMIKASEGGGGKGIRKSESADDFANLFRQVQAEVQGSPIFIMKTAGCAHHLEV 367

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            K        + P      I++++++ A    + +G
Sbjct: 368 QILADQYGNAISLFGRDCSIQRRHQKIIEEAPCAIAPPH----IFEQMEKAAVRLAKMVG 423

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+       ++LE+N +
Sbjct: 424 YVSAGTVEYLY-EADGSFYFLELNPR 448


>gi|310818953|ref|YP_003951311.1| propionyl-CoA carboxylase subunit alpha [Stigmatella aurantiaca
           DW4/3-1]
 gi|309392025|gb|ADO69484.1| Propionyl-CoA carboxylase, alpha subunit [Stigmatella aurantiaca
           DW4/3-1]
          Length = 503

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/233 (16%), Positives = 72/233 (30%), Gaps = 7/233 (3%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V   +  V  H   D      +G   E+       E   I +      A     +K R++
Sbjct: 64  VQERILEVARHAGADAIHPG-YGFLSENASFVRACEKAGITFIGPPASAMDAMGEKTRAR 122

Query: 98  QVVSSCGVPVCPSILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           Q +   GVPV P       T +        I  P ++K   GG   G+  ++K +     
Sbjct: 123 QNMIQAGVPVVPGTTEPIATQEEALAYAQKIGFPVMLKAAGGGGGKGMRKVEKTEEFDSA 182

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              + S           Y++        +                      +        
Sbjct: 183 WRSAKSEALNAFGNDAVYIEKYLDKPHHVEIQVFADQYGTTVHLGERECSAQRRHQKVVE 242

Query: 214 VLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P+ I   ++  ++  +A  A +A+   G    +FL D      ++LE+N +
Sbjct: 243 ETPSPILTPELRAQMGEVAVKAAKAVNYVGAGTVEFLVDAHRN-FYFLEMNTR 294


>gi|306835447|ref|ZP_07468465.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium accolens ATCC
           49726]
 gi|304568683|gb|EFM44230.1| acyl-CoA carboxylase, alpha subunit [Corynebacterium accolens ATCC
           49726]
          Length = 597

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +           P  IK   GG   G+ V+   + I      +           E 
Sbjct: 139 IDDWQEARAFAEEHGLPIAIKAAYGGGGRGLKVVDSMEEIEGAFNSAGREAMEAFGRAEC 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           YV+        +    L  T   V          +          PA    D     +  
Sbjct: 199 YVEKFLTHPRHVEAQVLADTHGNVRVLGTRDCSTQRRFQKLIEEAPAPALSDAQRTGIIE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +++       + +LE+N +
Sbjct: 259 GARSICSHVGYTGAGTVEYIVSE-DGTISFLEVNTR 293


>gi|254933983|gb|ACT87600.1| carbamoylphosphate synthetase [Euclea delphinii]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/302 (11%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV--SSCGVPVCPS 110
              G      G       + E   +    + I +   + D+    + +      V    +
Sbjct: 436 TFGGQTALNCGVSLEKSKVFEKYNVNVLGTPIQSIINTEDRKIFAEKISAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 496 VSSVDEAILAATQIGYPVMARSAFSLGGLGSGFANNEEEL--KALAYQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNTEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451107|gb|ABW38914.1| putative CAD trifunctional protein [Apatelodes torrefacta]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/302 (11%), Positives = 81/302 (26%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKALQEEKIQSVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGNFGED------GLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
              G    +               + +  T    +           K       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKIFEYYNVAVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + ++ DQL+I++
Sbjct: 496 VTSVDEALIAAKXIGYPVMARSAFSLGGLGSGFANNEDELRA--LAHQALSYSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNKDYYXLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|157150219|ref|YP_001451339.1| hypothetical protein SGO_2091 [Streptococcus gordonii str. Challis
           substr. CH1]
 gi|157075013|gb|ABV09696.1| conserved hypothetical protein [Streptococcus gordonii str. Challis
           substr. CH1]
          Length = 397

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 42/282 (14%), Positives = 80/282 (28%), Gaps = 36/282 (12%)

Query: 23  ASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGED--GLVQAILELLEIPYT 80
            +       +V  +DV+R     L          +LH    +      +    L      
Sbjct: 39  IAHFSRLTHRVPIVDVNRFPVDYLRQ-----VSQLLHKTNYKAILPTHEEGWLLANGKQF 93

Query: 81  HSGILASALSMDKMRSK-----QVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKG 135
               L  AL+  +   K         +  +   P+             +  PY +K   G
Sbjct: 94  LPQSLPIALADQEQFEKLAGKIAFAETADLLGLPTPKWEHVKDADSIRLDYPYWLKADYG 153

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
            +   +  I   + +    + S      ++ +++Q + G       + D    +      
Sbjct: 154 TAGRSVYKISSKKDL--AEVTSKLTASDEEWMVQQDIVGDYGQVQAVFDHGELLAVH--- 208

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                         +      A       K  +       Q I   G    DF+      
Sbjct: 209 --------SSVKVGSGAGGSAAARLSIESKRTREHVEKLGQYIQWHGCLTLDFI--RRGD 258

Query: 256 KVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           + +++E N  P M      P  A  AG +F ++   M+E AS
Sbjct: 259 QFYYIECN--PRMVE----PANAYKAGVNFPKI---MIELAS 291


>gi|153934619|ref|YP_001389036.1| pyruvate carboxylase [Clostridium botulinum A str. Hall]
 gi|152930533|gb|ABS36032.1| pyruvate carboxylase [Clostridium botulinum A str. Hall]
          Length = 1144

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G +     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYKSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|90417426|ref|ZP_01225350.1| propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2207]
 gi|90330760|gb|EAS46035.1| propionyl-CoA carboxylase, alpha subunit [marine gamma
           proteobacterium HTCC2207]
          Length = 660

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/289 (13%), Positives = 83/289 (28%), Gaps = 35/289 (12%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   K          D      +G   E+      L+   I +   
Sbjct: 47  EAVHIGPAASSESYLVIEKIVQACLDTGADAVHPG-YGFLSENSKFHDALDAAGIVFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSS 138
           G  A     DK+ SK +    GV   P         +    IS     P ++K   GG  
Sbjct: 106 GKKAIESMGDKITSKLIAQEAGVNCIPGYTDVVRDAEHAVEISAGIGYPVMLKASAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V   +        ++++           +++        +    +      V    
Sbjct: 166 KGMRVAMNEAECRDGFERATNEARSSFGDTRIFIEKYIQEPRHIEIQVMADGHGNVIYLG 225

Query: 199 FYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+    +   +++   +    +A+  +     +F+ D      
Sbjct: 226 ERECSIQRRHQKVIEEAPSPFLDEATRQKMGEQSCALARAVDYQSAGTVEFIADA-DMNF 284

Query: 258 FWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMVEDASCLR 300
           ++LE+N +              +       G   ++L+  M+  A+  +
Sbjct: 285 YFLEMNTR----------LQVEHPVTELVTG---QDLVELMIRVAAGEK 320


>gi|319940940|ref|ZP_08015277.1| pyruvate carboxylase [Sutterella wadsworthensis 3_1_45B]
 gi|319805513|gb|EFW02308.1| pyruvate carboxylase [Sutterella wadsworthensis 3_1_45B]
          Length = 1235

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 99/294 (33%), Gaps = 25/294 (8%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIP 78
             A A  L   G       +D    + LA  +  +A +   G   ED     +     I 
Sbjct: 55  AAASAQELILLGADPRA-YLDLPRIIRLARERGCVAIHPGWGFASEDNNFPKLCAEAGIT 113

Query: 79  YTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKG 135
           +  +   A  L  +K+ +++V  S G+PV P    +          H I  P ++K   G
Sbjct: 114 FIGATAEAMHLLGNKVEARRVARSLGIPVVPGSDESVDVPGARKIVHEIGLPIMLKAEGG 173

Query: 136 GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVP 195
           G   GI ++  +  +     ++S+           +V+        +    +      V 
Sbjct: 174 GGGRGIFLVTNEDELEDAFEKASAMAEASFGNPRLFVEKYLPKVHHIEIQVIADRWGNVF 233

Query: 196 KSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQ---AIGCRGISRSDFLFDP 252
             D     ++ ++     V P+       K    L   A +   A+G   ++  +FL   
Sbjct: 234 AFDERDCTVQRNNQKLLEVTPSPWRGMTPKLRAELKDYARRLVLAVGYHSVATVEFLVTE 293

Query: 253 LSRKVFWLEINVQPGMTPVSIFPEMAAYAGYS---FR-ELLLWMVEDA--SCLR 300
              + + +E+N             +    G +   +  +L+  M+  A  S LR
Sbjct: 294 A-GEPYMIEVNT-----------RLQVEHGITESRYGVDLVEEMIAIAFGSTLR 335


>gi|309810739|ref|ZP_07704546.1| pyruvate carboxylase [Dermacoccus sp. Ellin185]
 gi|308435276|gb|EFP59101.1| pyruvate carboxylase [Dermacoccus sp. Ellin185]
          Length = 1126

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 36/243 (14%), Positives = 80/243 (32%), Gaps = 8/243 (3%)

Query: 28  DAGFKVSQ-IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILA 86
           + G  V   +DVD  +  V      D  +   +G   E+ L+        I +       
Sbjct: 53  EVGHPVRAYLDVDE-IIRVARESGADAIYPG-YGFLSENPLLAEACADAGITFIGPKPAV 110

Query: 87  SALSMDKMRSKQVVSSCGVPVCPSILVNRFTM---DSQHLISPPYVIKPLKGGSSLGIIV 143
             ++ +K  +       G+P   S+  +            I  P  +K + GG   G+  
Sbjct: 111 LHMTGNKATAIAAAKRAGLPTLRSVPPSSDIDELVKGADDIGYPVFVKAVAGGGGRGMRR 170

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           ++K +++  +L  +             +++   +    +    L   E  V         
Sbjct: 171 VEKPEALRENLEAAMREAESAFGDATCFIEEAVVDPRHIEVQILADGEGDVVHLFERDCS 230

Query: 204 LKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
           ++        + PA     ++ + +   A    + IG       +FL D    +  ++E+
Sbjct: 231 VQRRHQKVVEIAPAPNLSPELRERMCADAVAFAKEIGYSCAGTVEFLLDTR-GRYVFIEM 289

Query: 263 NVQ 265
           N +
Sbjct: 290 NPR 292


>gi|296218891|ref|XP_002755617.1| PREDICTED: pyruvate carboxylase, mitochondrial [Callithrix jacchus]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 30/230 (13%), Positives = 70/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P     I+  +   +  +    P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPIMSLQEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|291562867|emb|CBL41683.1| acetyl-CoA carboxylase, biotin carboxylase [butyrate-producing
           bacterium SS3/4]
          Length = 451

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 37/248 (14%), Positives = 78/248 (31%), Gaps = 16/248 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTHS 82
           +   I    S    L   +          D       G   E+     + E   I +   
Sbjct: 47  EAICIGPAPSTESYLDMERILTACVVMKADAIHPGF-GFLSENARFAELCEKCNIRFIGP 105

Query: 83  GILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                    +K  +++ + + GVPV P     +      + +   +  P +IK   GG  
Sbjct: 106 SAEIINKMGNKSEARKTMMAAGVPVVPGSKEPVYTVEEGLKTAKEVGFPVMIKASSGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+ V + ++    + L +   +         Y++        +    L      V    
Sbjct: 166 KGMRVSRSEEDFEANFLNAQMESVKGFSDNTMYIERFVENPRHIEFQILGDRYGNVVHLG 225

Query: 199 FYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKV 257
                ++          P+  I  ++ K++   A  A +A+G       +FL D      
Sbjct: 226 ERDCSIQRRHQKVLEESPSAAISGELRKKMGETAVRAAKAVGYENAGTIEFLLDKDKN-F 284

Query: 258 FWLEINVQ 265
           +++E+N +
Sbjct: 285 YFMEMNTR 292


>gi|253688548|ref|YP_003017738.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
 gi|251755126|gb|ACT13202.1| urea carboxylase [Pectobacterium carotovorum subsp. carotovorum
           PC1]
          Length = 1204

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+       ++                    +++       
Sbjct: 147 AEDIGYPVMLKSTAGGGGIGLTRCADAVALQAAWESVRRLGEQFFSDAGVFLERCIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +        +  V         L+  +       PA    D     +   A    + + 
Sbjct: 207 HVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEETPAPHLPDATRAALLASAVKLGELVN 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     ++++D      F+LE+N +
Sbjct: 267 YRSAGTVEYIYDAERDAFFFLEVNTR 292


>gi|194387396|dbj|BAG60062.1| unnamed protein product [Homo sapiens]
          Length = 529

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|156537436|ref|XP_001606974.1| PREDICTED: similar to ENSANGP00000015662 [Nasonia vitripennis]
          Length = 2315

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/146 (16%), Positives = 55/146 (37%), Gaps = 6/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTC 179
            H I  P ++K  +GG   GI  ++  + +P    Q  +   G  + I +       L  
Sbjct: 274 AHKIGYPIMVKASEGGGGKGIRKVENAEELPSLFRQVQAEVPGSPIFIMKLAKCARHLEV 333

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D   +   +            +                D+++E+++ A    + +G
Sbjct: 334 QLLADNYGNAISLFGRDCSIQ----RRHQKIIEEAPAVIAKPDVFEEMEKAAVRLAKMVG 389

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L+D  S + ++LE+N +
Sbjct: 390 YVSAGTVEYLYDT-SGRYYFLELNPR 414


>gi|153931241|ref|YP_001385630.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 19397]
 gi|152927285|gb|ABS32785.1| pyruvate carboxylase [Clostridium botulinum A str. ATCC 19397]
          Length = 1144

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/285 (13%), Positives = 80/285 (28%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQIDVDRSVGLVLA------------HLKPDLAFN---------- 56
                 A  + G +   I  +     +                  D   N          
Sbjct: 16  AIRVFRACHELGIRTVAIYSEEDKFSLFRTKADEAYLIGKNKGPIDAYLNIEEIIQLALK 75

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+           I +            DK++SK V    GVP  P
Sbjct: 76  KGVDAIHPGYGFLAENSEFARKCREAGIEFIGPTAEMMEKLGDKIKSKIVAEKAGVPTIP 135

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----W 160
            +     +             P ++K   GG   G+ +++ ++ +      + +     +
Sbjct: 136 GVQKPIKSEKEALEFARYCGYPIMLKAAAGGGGRGMRIVRTEEELISSFKSAKNEAKKAF 195

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD   ++  +            K         LP K  
Sbjct: 196 GIDDIFIEKYLENPKHIEVQILGDKHGNIVHLYERDCSIQRRHQKVIEFTPAFALPKKKR 255

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +I       A    + +G +     +FL D      +++E+N +
Sbjct: 256 EEICN----DALKIAKTVGYKSAGTLEFLVDTTGNH-YFIEMNPR 295


>gi|78187446|ref|YP_375489.1| carbamoyl-phosphate synthase, large subunit [Chlorobium luteolum
           DSM 273]
 gi|78167348|gb|ABB24446.1| carbamoyl-phosphate synthase large subunit [Chlorobium luteolum DSM
           273]
          Length = 619

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 35/270 (12%), Positives = 88/270 (32%), Gaps = 32/270 (11%)

Query: 20  KACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVL 58
           +A   AL +AG++   +           D+   +            ++ H +P       
Sbjct: 118 QAVF-ALREAGYETIMVNCNPETVSTDYDIADKLYFEPLTFEDTIRIIEHEQPLGVIVSF 176

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G       +   L    +    +      L+ D+ +   ++    +P            
Sbjct: 177 GGQ--TPLKLSGRLHEAGVTILGTSPEGIDLAEDRKKFGALLDRLNIPHPEYGTAVCLEE 234

Query: 119 DSQ--HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIE 176
                  I  P +++P        + +I  D S+   + Q+        LL++++++   
Sbjct: 235 AQAITRRIGYPVLVRPSYVLGGRAMKIIYSDDSLKEYVDQALFITEKYPLLVDRFLE--- 291

Query: 177 LTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAH 235
                  DA  D ++  +     +       S +ST +LP      ++  +++    +  
Sbjct: 292 TAVEFDIDAIADESDCVISGIMQHVEAAGIHSGDSTSILPYHNISPEVIAKMKEYTRIMA 351

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G+    +     +  V+ +E+N +
Sbjct: 352 RNIKVVGLMNVQYAV--QNNSVYVIEVNPR 379


>gi|289673858|ref|ZP_06494748.1| carbamoyl-phosphate synthase subunit L [Pseudomonas syringae pv.
           syringae FF5]
          Length = 649

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEHTGELAEALASAQREALSSFGDARMLVEKYVLAPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +               +     ++          PA      + K +   A  A QAIG
Sbjct: 212 HVEIQVFADRHGHCLYLNERDCSIQRRHQKVVEEAPAPGLTASLRKAMGEAAVKAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|282860660|ref|ZP_06269726.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
 gi|282564396|gb|EFB69932.1| Carbamoyl-phosphate synthase L chain ATP-binding [Streptomyces sp.
           ACTE]
          Length = 658

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 10/145 (6%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH-----GDQLLIEQYVDGIELTCG 180
            P ++K   GG   G+ ++++   +P +L  +++        G+         G  +   
Sbjct: 145 LPLLLKASAGGGGRGMRIVREIGDLPGELTAAAAEAAAAFGDGEVFAEPYVERGRHVEVQ 204

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
           VM D    V  +            +             +   +   +   A  A QA+G 
Sbjct: 205 VMADDRGTVWALGTRDCSLQ----RRHQKVVEEAPAPGLDDALRARLHDAAVAAAQAVGY 260

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           RG    +FL      + ++LE+N +
Sbjct: 261 RGAGTVEFLLSA-DGRPYFLEMNTR 284


>gi|118470640|ref|YP_884747.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
 gi|118171927|gb|ABK72823.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain [Mycobacterium
           smegmatis str. MC2 155]
          Length = 669

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 18/141 (12%), Positives = 48/141 (34%), Gaps = 2/141 (1%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ ++  +  +   +  +             +++    +   +   
Sbjct: 162 FPILVKAAFGGGGRGMRIVADEDELLEAVAGARREAASAFGDGTVFLEKFVESPRHIEVQ 221

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIGCRGIS 244
               +   V         ++          P+  +   + +E+ R A  A +A+   G  
Sbjct: 222 IFGDSHGTVVHLGERECSIQRRYQKIIEEAPSTAVDPALREELGRAAVAAGKALAYEGAG 281

Query: 245 RSDFLFDPLSRKVFWLEINVQ 265
             +F+  P     ++LE+N +
Sbjct: 282 TVEFVMAP-DGSFYFLEVNTR 301


>gi|113868118|ref|YP_726607.1| Acetyl-CoA carboxylase alpha chain [Ralstonia eutropha H16]
 gi|113526894|emb|CAJ93239.1| Acetyl-CoA carboxylase alpha chain [Ralstonia eutropha H16]
          Length = 700

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/183 (16%), Positives = 62/183 (33%), Gaps = 17/183 (9%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
            I  P ++K   GG   G+ V++   ++   L Q+ S   G     E  ++        +
Sbjct: 150 RIGFPVILKAAAGGGGRGMRVVRDASTLLAALRQARSEAAGAFGSDEIIIERAIERGRHI 209

Query: 183 GDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPL-DIYKEVQRLAFLAHQAIGCR 241
               L                 +          P+     ++ + +  +A  A +AIG  
Sbjct: 210 EIQVLCDEHGRCLHLGERDCSTQRRFQKLIEEAPSPAVNAELRRAMGEVAVRACEAIGYT 269

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           G    +FL D    + +++E+N +     G+T +          G    +L+   +  A 
Sbjct: 270 GAGTLEFLLDGK-GRFYFMEMNTRLQVEHGVTEL--------VTGL---DLVEQQLRIAQ 317

Query: 298 CLR 300
             R
Sbjct: 318 GER 320


>gi|45382859|ref|NP_990836.1| acetyl-CoA carboxylase [Gallus gallus]
 gi|116669|sp|P11029|ACAC_CHICK RecName: Full=Acetyl-CoA carboxylase; Short=ACC; Includes: RecName:
           Full=Biotin carboxylase
 gi|211568|gb|AAA48701.1| acetyl-CoA carboxylase [Gallus gallus]
          Length = 2324

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 19/182 (10%), Positives = 57/182 (31%), Gaps = 6/182 (3%)

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           L      + ++ + +     +     +      + +   +  P +IK  +GG   GI  +
Sbjct: 265 LRVDWQENDLQKRILNVPQELYEKGYVKDADDGLRAAEEVGYPVMIKASEGGGGKGIRKV 324

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
                 P    Q  +   G  + + +       L   ++ D   +   +           
Sbjct: 325 NNADDFPNLFRQVQAEVPGSPIFVMRLAKQSRHLEVQILADQYGNAISLFGRDCSVQ--- 381

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
            +           +     +++ +++ A    + +G       ++L+       ++LE+N
Sbjct: 382 -RRHQKIIEEAPASIATSVVFEHMEQCAVKLAKMVGYVSAGTVEYLYS-QDGSFYFLELN 439

Query: 264 VQ 265
            +
Sbjct: 440 PR 441


>gi|148547011|ref|YP_001267113.1| carbamoyl-phosphate synthase L chain, ATP-binding [Pseudomonas
           putida F1]
 gi|148511069|gb|ABQ77929.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Pseudomonas
           putida F1]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|313498057|gb|ADR59423.1| Carbamoyl-phosphate synthase L chain, ATP-binding protein
           [Pseudomonas putida BIRD-1]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|296333409|ref|ZP_06875862.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305675085|ref|YP_003866757.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
 gi|296149607|gb|EFG90503.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii ATCC 6633]
 gi|305413329|gb|ADM38448.1| acetyl-CoA carboxylase biotin carboxylase subunit [Bacillus
           subtilis subsp. spizizenii str. W23]
          Length = 450

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 52/146 (35%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
            + I  P +IK   GG   GI V + ++ +   +  +             Y++       
Sbjct: 148 ANEIGYPVIIKATAGGGGKGIRVARTEEELINGIKITQQEAATAFGNPGVYIEKYIEDFR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L                ++          P+     +I +++   A  A +A+G
Sbjct: 208 HVEIQVLADNYGNTIHLGERDCSIQRRLQKLLEESPSPALDSEIREQMGDAAVKAAKAVG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +F++D   ++ +++E+N +
Sbjct: 268 YTGAGTVEFIYDYKEQRYYFMEMNTR 293


>gi|255323869|ref|ZP_05364995.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium tuberculostearicum SK141]
 gi|255299049|gb|EET78340.1| acetyl-/propionyl-coenzyme A carboxylase alpha chain
           [Corynebacterium tuberculostearicum SK141]
          Length = 593

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +           P  IK   GG   G+ V+   + I      +           E 
Sbjct: 139 IDDWQEARAFAEEHGLPIAIKAAYGGGGRGLKVVDNMEEIEGAFNSAGREAMEAFGRAEC 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           YV+        +    L  T   V          +          PA    D     +  
Sbjct: 199 YVEKFLTHPRHVEAQVLADTHGNVRVLGTRDCSTQRRFQKLIEEAPAPALSDAQRNGIIE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +++       + +LE+N +
Sbjct: 259 GARSICSKVGYTGAGTVEYIVSE-DGTISFLEVNTR 293


>gi|311739875|ref|ZP_07713709.1| acetyl/propionyl-CoA carboxylase [Corynebacterium pseudogenitalium
           ATCC 33035]
 gi|311304948|gb|EFQ81017.1| acetyl/propionyl-CoA carboxylase [Corynebacterium pseudogenitalium
           ATCC 33035]
          Length = 593

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 24/156 (15%), Positives = 41/156 (26%), Gaps = 2/156 (1%)

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           I   +           P  IK   GG   G+ V+   + I      +           E 
Sbjct: 139 IDDWQEARAFAEEHGLPIAIKAAYGGGGRGLKVVDNMEEIEGAFNSAGREAMEAFGRAEC 198

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQR 229
           YV+        +    L  T   V          +          PA    D     +  
Sbjct: 199 YVEKFLTHPRHVEAQVLADTHGNVRVLGTRDCSTQRRFQKLIEEAPAPALSDAQRNGIIE 258

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A      +G  G    +++       + +LE+N +
Sbjct: 259 GARSICSKVGYTGAGTVEYIVSE-DGTISFLEVNTR 293


>gi|269925439|ref|YP_003322062.1| lysine biosynthesis enzyme LysX [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789099|gb|ACZ41240.1| lysine biosynthesis enzyme LysX [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 288

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/245 (15%), Positives = 67/245 (27%), Gaps = 14/245 (5%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
              A E  G  + +ID DR +   L          VL            +  L       
Sbjct: 17  IFKAAERLGVDIVRID-DRDLIFDLGKKDFPEVDIVLDRGLVHSRAEYTLRILESWGIPT 75

Query: 82  SGILASALSMDKMRSKQVV---SSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSS 138
                + ++ D      +                     +++   +  P V+KP  G   
Sbjct: 76  VNSYKATITCDNKFLTNMALIEHGVPTLRTMLAYTPESAIEAIERLGYPVVLKPNTGSWG 135

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
             +  I    +    L          ++L   +     +   V          +      
Sbjct: 136 RLLAKINDRDAAEAVLEH-------KEILGSYHHSIFYIQEYVQKPGRDIRAFVIGDSVI 188

Query: 199 FYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVF 258
             SY      + +T       P  I  E++ LA  A  A+G   I+  D +  P   K  
Sbjct: 189 AASYRQSDHWITNTARGGISAPCPITPEIEDLALRAANAVGAE-IAGVDIIETPEGYK-- 245

Query: 259 WLEIN 263
            +EIN
Sbjct: 246 VIEIN 250


>gi|149634284|ref|XP_001508230.1| PREDICTED: similar to acetyl-Coenzyme A carboxylase beta
           [Ornithorhynchus anatinus]
          Length = 2450

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 33/207 (15%), Positives = 74/207 (35%), Gaps = 6/207 (2%)

Query: 60  GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMD 119
           G+     +V   L++  +P++ SG+     + D  + K++     V V   +      ++
Sbjct: 375 GDKVASTIVAQTLQIPTLPWSGSGLSVDWTASDLQQMKRISVPQEVYVRGCVRDVDEGLE 434

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ-YVDGIELT 178
           +   I  P +IK  +GG   GI   +  +  P+   Q  S   G  + + +       L 
Sbjct: 435 AAEKIGFPVMIKASEGGGGKGIRKAESAEDFPILFRQVQSEIPGSPVFVMKLAQHARHLE 494

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
             ++ D       +            K        V P      +++ +++ A    + +
Sbjct: 495 VQILADQYGSAVSLFGRDCSIQRRHQKIIEEAPATVAPP----AVFEYMEQCAVRLAKTV 550

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       ++L+        +LE+N +
Sbjct: 551 GYVSAGTVEYLYS-DDGSFHFLELNPR 576


>gi|56695491|ref|YP_165839.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Ruegeria
           pomeroyi DSS-3]
 gi|56677228|gb|AAV93894.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Ruegeria
           pomeroyi DSS-3]
          Length = 660

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 23/146 (15%), Positives = 51/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ +++   ++   L ++ +   G     E  ++   +   
Sbjct: 150 AEQIGYPLMVKAAAGGGGRGMRLVEGPGALSEALARARAEALGAFGSDELILERAVVEPR 209

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQAIG 239
            +          AV         ++          P   +  ++   +   A  A +A+ 
Sbjct: 210 HVEFQVFGDAHGAVIHLGERDCSVQRRHQKVIEEAPCPVMTPELRDAMGAAAVAAARAVD 269

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL D      ++LE+N +
Sbjct: 270 YRGAGTVEFLLDASGG-FYFLEMNTR 294


>gi|297538522|ref|YP_003674291.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
 gi|297257869|gb|ADI29714.1| acetyl-CoA carboxylase, biotin carboxylase [Methylotenera sp. 301]
          Length = 472

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 45/277 (16%), Positives = 88/277 (31%), Gaps = 35/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G K   I  D      L   K D A+N                         
Sbjct: 17  IVRACSEMGIKSVAIYADAD-RQALHVKKADEAYNIGADPVAGYLNAHNIVNLAVASGCD 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILV 113
            LH   G   E+  +  I     I +            DK++++  ++S G+P  P    
Sbjct: 76  ALHPGYGFLSENPELAEICARRGIKFIGPNAAVIRQMGDKIQARNAMTSAGIPCTPGSDG 135

Query: 114 NRFTMDSQH----LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
           N   ++        I  P ++K   GG   GI     ++ +  +  +  S         E
Sbjct: 136 NLEDLNEAIALAAKIGYPVMLKATNGGGGRGIRRCDSEKELLGNYDRVISEASKAFGKPE 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            +++   ++   +    L  ++  V         ++  +     + P+          + 
Sbjct: 196 VFLEKCVVSPRHIEVQILADSQGNVIHLFERDCSIQRRNQKLIEIAPSPQLTQAQRDYIG 255

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            LA  A +A+G       +FL D      +++E+N +
Sbjct: 256 GLAVKAAKAVGYENAGTVEFLLD-SDNTFYFMEMNTR 291


>gi|109105240|ref|XP_001107814.1| PREDICTED: pyruvate carboxylase, mitochondrial isoform 2 [Macaca
           mulatta]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|89886131|ref|NP_808815.2| pyruvate carboxylase, mitochondrial precursor [Bos taurus]
 gi|88954111|gb|AAI14136.1| Pyruvate carboxylase [Bos taurus]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|1101029|gb|AAA82937.1| pyruvate carboxylase precursor [Homo sapiens]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|26990768|ref|NP_746193.1| acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           putida KT2440]
 gi|24985768|gb|AAN69657.1|AE016600_7 acetyl-CoA carboxylase, biotin carboxylase, putative [Pseudomonas
           putida KT2440]
          Length = 650

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 25/146 (17%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++++  +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKASAGGGGKGMKVVEEESQLADALASAQREAQSSFGDARMLVEKYVLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA     ++ + +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPELRRAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|106049292|ref|NP_071504.2| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|106049295|ref|NP_000911.2| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|106049528|ref|NP_001035806.1| pyruvate carboxylase, mitochondrial precursor [Homo sapiens]
 gi|1709947|sp|P11498|PYC_HUMAN RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|458236|gb|AAA99537.1| pyruvate: carbon-dioxide ligase (ADP-forming) [Homo sapiens]
 gi|15079594|gb|AAH11617.1| Pyruvate carboxylase [Homo sapiens]
 gi|119594974|gb|EAW74568.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594975|gb|EAW74569.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594976|gb|EAW74570.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594977|gb|EAW74571.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|119594978|gb|EAW74572.1| pyruvate carboxylase, isoform CRA_a [Homo sapiens]
 gi|261858108|dbj|BAI45576.1| pyruvate carboxylase [synthetic construct]
 gi|1092179|prf||2023166A pyruvate carboxylase
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|254934047|gb|ACT87632.1| carbamoylphosphate synthetase [Platynota idaeusalis]
          Length = 975

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 375 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 434

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E   +    + I +   + D+    + ++S    V    +
Sbjct: 435 TFGGQTALNCGVELQKSKVFEKYNVQVLGTPIQSIIDTEDRKIFAEKINSIGEKVAPSAA 494

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 495 VFSVEEAVTAAVQIGYPVMARAAFSLGGLGSGFANNEEELRN--LAHQAFSHSDQLIIDK 552

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 553 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 611

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 612 ALKVIRHFGIVGECNIQYALNPCSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 667

Query: 291 WM 292
            +
Sbjct: 668 KL 669


>gi|110825736|sp|Q29RK2|PYC_BOVIN RecName: Full=Pyruvate carboxylase, mitochondrial; AltName:
           Full=Pyruvic carboxylase; Short=PCB; Flags: Precursor
 gi|296471576|gb|DAA13691.1| pyruvate carboxylase, mitochondrial precursor [Bos taurus]
          Length = 1178

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTSDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|309973527|gb|ADO96728.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae R2846]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVGNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|268326222|emb|CBH39810.1| conserved hypothetical protein, containing ATP-grasp domain
           [uncultured archaeon]
          Length = 382

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 11/227 (4%)

Query: 40  RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQV 99
             V L L          V+ G+  E      +          +    +    +K      
Sbjct: 52  DQVDLKLLEGTIKAVDGVILGSGFECADFDFLTAEDRGKIVGNNPAKTKQVANKAWLASK 111

Query: 100 VSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS 159
           +   G+P   +      T      +  P V KP  GG  +       +  +     Q   
Sbjct: 112 LDHFGIPQPLTYTGKAITDGKAKQLHYPVVAKPAYGGGGIANFFCYTETELIRSAKQL-- 169

Query: 160 WNHGDQLLIEQYVDGIELTCGVMGDASL-DVTEIAVPKSDFYSYELKYSSLNSTHVLPAK 218
                + L + Y+ G   +  V+          +        S       +   ++ P  
Sbjct: 170 ----PEFLFQDYIKGKPASISVISSKRDVIAISVNEQLIGLDSLSAPAPLVYCGNISPFV 225

Query: 219 IPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                      +A    + +G  G +  D +          +E+N +
Sbjct: 226 TTYA--DTACEIAETLTKELGLLGSNGVDIVIT--DDGPVVIEVNPR 268


>gi|218548590|ref|YP_002382381.1| phosphoribosylglycinamide formyltransferase 2 [Escherichia
           fergusonii ATCC 35469]
 gi|218356131|emb|CAQ88748.1| phosphoribosylglycinamide formyltransferase 2 [Escherichia
           fergusonii ATCC 35469]
 gi|324113585|gb|EGC07560.1| phosphoribosylglycinamide formyltransferase 2 [Escherichia
           fergusonii B253]
 gi|325497008|gb|EGC94867.1| phosphoribosylglycinamide formyltransferase 2 [Escherichia
           fergusonii ECD227]
          Length = 392

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 32/273 (11%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D                       ++  V+   KP      +
Sbjct: 24  GKEVAIECQRLGVEVIAVDRYADAPAMHVAHRSYVINMLDGDALRHVVEQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                 +
Sbjct: 84  EAIATDTLVKLEQEGQHVVPCARATQLTMNREGIRRLAAEELQLPT-STYRFAESEENFL 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+  + +        +   G        V+G+   
Sbjct: 143 TAVEEIGYPCIVKPVMSSSGKGQSFIRSAEQLTQA--WEYAQQGGRAGAGRVIVEGVVKF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +             +          P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGV--HFCDPVGHRQQDGDYRESWQPQQMSKLALERAQEIARKVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGYGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|193213165|ref|YP_001999118.1| carbamoyl-phosphate synthetase large chain domain-containing
           protein [Chlorobaculum parvum NCIB 8327]
 gi|193086642|gb|ACF11918.1| Carbamoyl-phosphate synthetase large chain domain protein
           [Chlorobaculum parvum NCIB 8327]
          Length = 618

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 39/268 (14%), Positives = 86/268 (32%), Gaps = 28/268 (10%)

Query: 20  KACASALEDAGFKVSQI-----------DVDRSVGL----------VLAHLKPDLAFNVL 58
           +A   AL +AG++   +           D+   +            ++ H +P       
Sbjct: 118 QAVF-ALREAGYETIMVNCNPETVSTDYDIADKLYFEPLTFEDTIRIIEHEQPLGVIVSF 176

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
            G        +     + I  T S  +  A    +  +         P   +        
Sbjct: 177 GGQTPLKLSTKLDAAGVNILGTSSDGIDLAEDRKRFGALLEKLEIPHPEYGTATSFAEAQ 236

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
           +    I  P +++P        + +I  D S+   + Q+   +    LLI+ +++     
Sbjct: 237 EITKRIGYPVLVRPSYVLGGRAMRIIYNDDSLKEYVDQALFISEKYPLLIDHFLE---TA 293

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAK-IPLDIYKEVQRLAFLAHQA 237
                DA  D T+  +     +       S +ST +LP   +       ++       ++
Sbjct: 294 VEFDIDALADETDCVISGIMQHVEAAGIHSGDSTSILPYYNMDPAAIATMKEYTRKLAKS 353

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           IG  G+    +     +  V+ +E+N +
Sbjct: 354 IGVIGLMNVQYAV--QNGSVYVIEVNPR 379


>gi|83815447|ref|YP_445070.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
 gi|83756841|gb|ABC44954.1| acetyl-CoA carboxylase, biotin carboxylase [Salinibacter ruber DSM
           13855]
          Length = 491

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 40/267 (14%), Positives = 85/267 (31%), Gaps = 26/267 (9%)

Query: 21  ACASALEDA----GF--KVSQIDVDRSVGLVLAHLKPDLAF--------NVLH---GNFG 63
           A  S ++       F  +   I    S    L   +PD           + +H   G   
Sbjct: 68  AVYSTIDRDALHVRFADEAVCIGPAASSESYL---RPDRLIAAAEVTGADAIHPGYGFLA 124

Query: 64  EDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMD 119
           E+     I    +I +        +L  +K ++K+ +   GVP+       +       +
Sbjct: 125 ENAEFSQICADNDIEFIGPSAETISLMGEKSKAKEEMHKAGVPIVEGSDGTVGDLDTAYE 184

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P ++K + GG   G+ ++++          + S         E Y++      
Sbjct: 185 IASDIGFPVMVKAVAGGGGTGMRLVREADGFERAFNGARSEADAAFGNPEVYIEKFVEKP 244

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA-FLAHQAI 238
             +    L   +  V         ++          P+ +  +  +E    A     +A+
Sbjct: 245 RHVEIQVLGDGQGNVMHFGERECSIQRRHQKLLEECPSPVVDEELREEMGAAAIRGAEAV 304

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G    +FL     R  +++E+N +
Sbjct: 305 DYEGAGTVEFLV-GADRNFYFMEMNTR 330


>gi|170717870|ref|YP_001784926.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           somnus 2336]
 gi|168825999|gb|ACA31370.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus somnus
           2336]
          Length = 448

 Score = 44.9 bits (104), Expect = 0.016,   Method: Composition-based stats.
 Identities = 41/281 (14%), Positives = 80/281 (28%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNV------------------- 57
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 58  ----LH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
               +H   G   E+      +E     +         L  DK+ +   +   GVP  P 
Sbjct: 74  GTDAIHPGYGFLSENADFAEQVERSGFIFIGPTADVIRLMGDKVSAINAMKKAGVPCVPG 133

Query: 111 IL-----VNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                        +    I  P +IK   GG   G+ V++ ++S+   +  + +      
Sbjct: 134 SDGPLGADINKNKEIAKRIGYPIIIKASGGGGGRGMRVVRDEKSLEESIAMTKAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L  T             ++          PA    +  +
Sbjct: 194 NNDMVYMEKYLENPRHIEIQVLADTHGNAIYLAERDCSMQRRHQKVVEEAPAPGISEETR 253

Query: 226 EVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                    A   IG RG    +FL+   + + +++E+N +
Sbjct: 254 RDIGTRCANACLEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|324998419|ref|ZP_08119531.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudonocardia
           sp. P1]
          Length = 464

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 23/139 (16%), Positives = 40/139 (28%), Gaps = 1/139 (0%)

Query: 126 PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDA 185
            P ++K   GG   G+ +I+    I      +             Y++        +   
Sbjct: 160 LPMMLKASAGGGGRGMSIIRDAAEIGPRFDTAHREAEQAFGDGRLYLERYVAKARHVEVQ 219

Query: 186 SLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGIS 244
            L      V          +          PA   P  +  E++  A      +G  G  
Sbjct: 220 VLADAYGTVCHLGDRDCSTQRRHQKLVEEGPAPDLPAALSAEIRGAAVRLASELGYVGAG 279

Query: 245 RSDFLFDPLSRKVFWLEIN 263
             +FL D       +LE+N
Sbjct: 280 TVEFLVDVDRGDFVFLEVN 298


>gi|290508822|ref|ZP_06548193.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella sp.
           1_1_55]
 gi|289778216|gb|EFD86213.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella sp.
           1_1_55]
          Length = 392

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SSYRFADSEEGFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 AAVTDIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQAIARKVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|290973468|ref|XP_002669470.1| pyruvate carboxylase [Naegleria gruberi]
 gi|284083018|gb|EFC36726.1| pyruvate carboxylase [Naegleria gruberi]
          Length = 1200

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/250 (16%), Positives = 82/250 (32%), Gaps = 16/250 (6%)

Query: 32  KVSQIDVDRSVGLVLAHLKPDLAF--------NVLH---GNFGEDGLVQAILELLEIPYT 80
           +   I  D+ +G V A+L  D           + +H   G   E            I + 
Sbjct: 111 ESYLIGKDKELGPVEAYLSIDEIIKIAKENGVDAIHPGYGFLSERADFARACSENGIQFI 170

Query: 81  HSGILASALSMDKMRSKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGG 136
                      DK R+++V +  G+PV P     +            IS P ++K   GG
Sbjct: 171 GPTADVVESFGDKTRARKVATDIGIPVVPGTPTAVTSIAEAKTFCSQISFPVILKAAMGG 230

Query: 137 SSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPK 196
              G+ V+ K + +     ++SS           +++        +    L      V  
Sbjct: 231 GGRGMRVVSKMEDLEEAFQRASSEALNAFGSSAIFIEKFVEKPRHIEVQILADKFGNVVH 290

Query: 197 SDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSR 255
                  ++        + PA      + +++   A    + +  +     +FL D   +
Sbjct: 291 LYERDCSVQRRHQKVVEIAPAPHLNPQVREKILADAVRLARHVKYQNAGTFEFLVDSNGK 350

Query: 256 KVFWLEINVQ 265
             +++E+N +
Sbjct: 351 DYYFIEVNPR 360


>gi|227550571|ref|ZP_03980620.1| acetyl-CoA carboxylase [Enterococcus faecium TX1330]
 gi|257897026|ref|ZP_05676679.1| acetyl-CoA carboxylase [Enterococcus faecium Com12]
 gi|293378719|ref|ZP_06624877.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium PC4.1]
 gi|227180279|gb|EEI61251.1| acetyl-CoA carboxylase [Enterococcus faecium TX1330]
 gi|257833591|gb|EEV60012.1| acetyl-CoA carboxylase [Enterococcus faecium Com12]
 gi|292642647|gb|EFF60799.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Enterococcus
           faecium PC4.1]
          Length = 459

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 49/318 (15%), Positives = 97/318 (30%), Gaps = 59/318 (18%)

Query: 22  CASALEDAGFKVSQIDVDRS---VGLVLAHLKP--------DLAFN-------------- 56
              A  + G +   I  +     +   LA            D   N              
Sbjct: 17  IIRACRELGIQTVAIYSEADAEALHTQLADEAICIGPAKAVDSYLNVQEVLSAAIVTKAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+    ++ E   I +            +K+ ++Q++    VPV P    
Sbjct: 77  AIHPGFGFLSENSRFASMCEECNITFIGPKSATIDAMGNKINARQLMQEANVPVIPGSTG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      ++    I  P ++K   GG   GI  ++  + +P     +       + + D
Sbjct: 137 VLSTVEEALEIADRIGYPVMLKAAAGGGGKGIRKVQSKEELPQHFSSAQQEAAAAFGNDD 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             L +       +   ++GD   +V  +            K    + + V+       + 
Sbjct: 197 MYLEKIIYPARHIEVQILGDHFGNVIHLGERDCSLQRNNQKVLEESPSVVISQSKREALG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAA 279
                 A  A +A+        +FL D    + +++E+N       P         EM  
Sbjct: 257 D----AAVRAAKAVNYENAGTIEFLMDEE-GEFYFMEMNTRIQVEHP-------VTEM-- 302

Query: 280 YAGYSFRELLLWMVEDAS 297
             G    +L+   VE A+
Sbjct: 303 VTGI---DLVKKQVEIAA 317


>gi|221199838|ref|ZP_03572881.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2M]
 gi|221207493|ref|ZP_03580502.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2]
 gi|221172696|gb|EEE05134.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2]
 gi|221180077|gb|EEE12481.1| acetyl-CoA carboxylase, biotin carboxylase [Burkholderia
           multivorans CGD2M]
          Length = 496

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +  +L  +             Y++       
Sbjct: 162 AARIGYPVMIKAAAGGGGRGIRVAHDAAQLEAELPLAQREAQAAFGDGGVYLERFIARAR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L      V   +      +             +   +  E+   A    + +G 
Sbjct: 222 HIEVQVLGDGRDVVHLFERECSLQRRRQKILEEAPSPSLTPALRAELCASATRLAREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           R     ++LFD    + +++E+N +
Sbjct: 282 RSAGTLEYLFDDTRGEFYFIEMNTR 306


>gi|206575723|ref|YP_002237764.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae 342]
 gi|288934621|ref|YP_003438680.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella variicola
           At-22]
 gi|254788771|sp|B5XQ21|PURT_KLEP3 RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|206564781|gb|ACI06557.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella
           pneumoniae 342]
 gi|288889330|gb|ADC57648.1| phosphoribosylglycinamide formyltransferase 2 [Klebsiella variicola
           At-22]
          Length = 392

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 33/273 (12%), Positives = 75/273 (27%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID--VD------------------RSVGLVLAHLKPDLAFNVL 58
           GK  A   +  G +   +D   D                   S+  ++   KPD     +
Sbjct: 24  GKEVAIECQRLGIETIAVDRYPDAPAMQVAHRAHVINMLHGESLRALIEQEKPDYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +         +P   +  L       +  + + +                  
Sbjct: 84  EAIATDTLVELEQAGQKVVPTARAAKLTMNREGIRRLAAEELQLPT-SSYRFADSEEGFR 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G   I+    +        +   G        V+G+   
Sbjct: 143 AAVTDIGLPCIVKPVMSSSGKGQSFIRSADQLSEA--WRYAQQGGRAGAGRVIVEGVVNF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P ++     +  Q +A     A+
Sbjct: 201 DFEITLLTVSAVDGVHFCAPVGHRQEDG--DYRESWQPQQMSDLALERAQAIARKVVLAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +        +V + E++ +P   GM
Sbjct: 259 GGHGLFGVELFVC--GDEVIFSEVSPRPHDTGM 289


>gi|160876086|ref|YP_001555402.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS195]
 gi|160861608|gb|ABX50142.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS195]
 gi|315268282|gb|ADT95135.1| Carbamoyl-phosphate synthase L chain ATP-binding protein
           [Shewanella baltica OS678]
          Length = 680

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 153 ALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFGNDKLLMERYLRQPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA    D +  ++   A  A +AI 
Sbjct: 213 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGDAAVAAAKAID 272

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 273 YVGAGTVEFLLDT-DNSFYFMEMNTR 297


>gi|161523547|ref|YP_001578559.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|189351683|ref|YP_001947311.1| acetyl-CoA carboxylase biotin carboxylase subunit [Burkholderia
           multivorans ATCC 17616]
 gi|160340976|gb|ABX14062.1| Carbamoyl-phosphate synthase L chain ATP-binding [Burkholderia
           multivorans ATCC 17616]
 gi|189335705|dbj|BAG44775.1| biotin carboxylase [Burkholderia multivorans ATCC 17616]
          Length = 496

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/145 (15%), Positives = 44/145 (30%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   GI V      +  +L  +             Y++       
Sbjct: 162 AARIGYPVMIKAAAGGGGRGIRVAHDAAQLEAELPLAQREAQAAFGDGGVYLERFIARAR 221

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGC 240
            +    L      V   +      +             +   +  E+   A    + +G 
Sbjct: 222 HIEVQVLGDGRDVVHLFERECSLQRRRQKILEEAPSPSLTPALRAELCASATRLAREVGY 281

Query: 241 RGISRSDFLFDPLSRKVFWLEINVQ 265
           R     ++LFD    + +++E+N +
Sbjct: 282 RSAGTLEYLFDDTRGEFYFIEMNTR 306


>gi|89099591|ref|ZP_01172466.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
 gi|89085744|gb|EAR64870.1| acetyl-CoA carboxylase [Bacillus sp. NRRL B-14911]
          Length = 458

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 50/146 (34%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K   GG  +G+I  + +Q++      + +         E +V+       
Sbjct: 158 ADEMGYPVMLKASGGGGGIGMIRCENEQALAKSYESTKARAKAYFGSDEVFVEKYIPNAR 217

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       +   +         ++          P+    +   + + + A  A +A+G
Sbjct: 218 HIEVQIFGDSFGNLVHLYERDCSIQRRHQKVVEESPSPFLSEGTRQNMLKTALRAGEAVG 277

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +F+ D      ++LE+N +
Sbjct: 278 YVNAGTVEFIVDEEEN-FYFLEMNTR 302


>gi|326795469|ref|YP_004313289.1| methylcrotonoyl-CoA carboxylase [Marinomonas mediterranea MMB-1]
 gi|326546233|gb|ADZ91453.1| Methylcrotonoyl-CoA carboxylase [Marinomonas mediterranea MMB-1]
          Length = 673

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 15/129 (11%), Positives = 39/129 (30%), Gaps = 7/129 (5%)

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLL--IEQYVDGIELTCGVMGDASLDVTEIAVPK 196
             +   +          + +    GD  +   +   +   +   V  D   +   +    
Sbjct: 169 RQVWQAEDFDEALAAAKREAMNGFGDDTMLVEKYLTEPRHVEIQVFCDQHHNAVYLFERD 228

Query: 197 SDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRK 256
                   +             +   + +++   A  A QAI  +G    +FL D    +
Sbjct: 229 CSLQ----RRHQKVIEEAPAPGMSDSLRQQMGEAAVRAAQAIDYQGAGTVEFLLD-HDGR 283

Query: 257 VFWLEINVQ 265
            +++E+N +
Sbjct: 284 FYFMEMNTR 292


>gi|310780278|ref|YP_003968610.1| pyruvate carboxylase [Ilyobacter polytropus DSM 2926]
 gi|309749601|gb|ADO84262.1| pyruvate carboxylase [Ilyobacter polytropus DSM 2926]
          Length = 1145

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 37/285 (12%), Positives = 87/285 (30%), Gaps = 43/285 (15%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAF----- 55
                 A ++ G +   I                   + ++ G + A+L  D        
Sbjct: 17  AIRIIRACKELGIRAVAIYSEEDKTALFRMKADEAYMIGKNKGPIDAYLSIDEIIQLAKK 76

Query: 56  ---NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
              + +H   G   E+       +   I +            DK++SK V +  GVP  P
Sbjct: 77  KGVDAIHPGYGFLSENPEFARKCDEAGIEFIGPTAEMMESLGDKIKSKIVSAKVGVPTIP 136

Query: 110 SILVNRFTMD----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ-----SSSW 160
            +     + +           P ++K   GG   G+ +++    +             ++
Sbjct: 137 GVDKPIKSEEDLLSFSETCGYPIMLKAAAGGGGRGMRIVRTHSELIDSYRSAKNEAMKAF 196

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
              D  + +   +   +   ++GD S ++  +            +             + 
Sbjct: 197 GIDDIFVEKYVENPKHIEVQILGDKSGNIVHLYERDCSVQ----RRHQKVVEITPAITLS 252

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            +  K +   A    +++  R     +FL D      +++E+N +
Sbjct: 253 EEKRKVICADAIKIAKSVNYRNAGTLEFLVDKDENH-YFIEMNPR 296


>gi|304409876|ref|ZP_07391495.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS183]
 gi|307302417|ref|ZP_07582175.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica BA175]
 gi|304351285|gb|EFM15684.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS183]
 gi|306914455|gb|EFN44876.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica BA175]
          Length = 686

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 153 ALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFGNDKLLMERYLRQPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA    D +  ++   A  A +AI 
Sbjct: 213 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGDAAVAAAKAID 272

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 273 YVGAGTVEFLLDT-DNSFYFMEMNTR 297


>gi|237798687|ref|ZP_04587148.1| urea amidolyase-like protein [Pseudomonas syringae pv. oryzae str.
           1_6]
 gi|331021540|gb|EGI01597.1| urea amidolyase-like protein [Pseudomonas syringae pv. oryzae str.
           1_6]
          Length = 1037

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 16/68 (23%), Positives = 33/68 (48%), Gaps = 15/68 (22%)

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ----PGMTPVSIFPEMAAYAGYSFRELLLW 291
           +A+  R     +F+FD   ++ ++LE+N +     G+T      ++    G    +L+ W
Sbjct: 101 RAVSYRSAGTVEFVFDSEDQRFYFLEVNTRLQVEHGVTE-----QVW---GV---DLVSW 149

Query: 292 MVEDASCL 299
           MV+ A+  
Sbjct: 150 MVQLAAGD 157


>gi|158451219|gb|ABW38970.1| putative CAD trifunctional protein [Mirina christophi]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K    +  V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINAINEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTSVEEAIAAAVHIGYPVMARSAFSLGGLGSGFANNEEELRT--LAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451213|gb|ABW38967.1| putative CAD trifunctional protein [Lasiocampa quercus]
          Length = 976

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 87/302 (28%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSGIFEKYNVSVLGTPIQSIVDTEDRKIFAEKIHCIXEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      +  +    L   + +H DQL+I++
Sbjct: 496 VTSVEEALSAALQIGYPVMARSAFSLGGLGSGFANNEDELRA--LAHQALSHSDQLVIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYLLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPHSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|146283594|ref|YP_001173747.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           stutzeri A1501]
 gi|145571799|gb|ABP80905.1| biotin carboxylase [Pseudomonas stutzeri A1501]
 gi|327481989|gb|AEA85299.1| acetyl-CoA carboxylase biotin carboxylase subunit [Pseudomonas
           stutzeri DSM 4166]
          Length = 449

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P +IK   GG   G+ V+ K++ +      + +           Y++       
Sbjct: 149 AREVGYPVIIKAAGGGGGRGMRVVHKEEDLIASAKLTRNEAGAAFGNPMVYLEKFLTNPR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +    L   +            L+          PA +  +  +   +     A   IG
Sbjct: 209 HVEIQVLADGQGNAIHLGDRDCSLQRRHQKVIEEAPAPLIDEEARRKVQARCVKACIDIG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +FL+       +++E+N +
Sbjct: 269 YRGAGTFEFLY--EDGNFYFIEMNTR 292


>gi|153001365|ref|YP_001367046.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS185]
 gi|151365983|gb|ABS08983.1| Carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS185]
          Length = 686

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 153 ALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFGNDKLLMERYLRQPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA    D +  ++   A  A +AI 
Sbjct: 213 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGDAAVAAAKAID 272

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 273 YVGAGTVEFLLDT-DNSFYFMEMNTR 297


>gi|77414426|ref|ZP_00790578.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 515]
 gi|77159508|gb|EAO70667.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae 515]
          Length = 456

 Score = 44.9 bits (104), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +     I  P ++K   GG   GI  +K    +      +S      + +G 
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+   +  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVLEESPSVAIGNTLRQQIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAEAVS----YENAGTIEFLLDENSGQFYFMEMNTR 293


>gi|330830940|ref|YP_004393892.1| biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Aeromonas veronii B565]
 gi|328806076|gb|AEB51275.1| Biotin carboxylase / acetyl-coenzyme A carboxylase carboxyl
           transferase subunit alpha [Aeromonas veronii B565]
          Length = 446

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/285 (14%), Positives = 85/285 (29%), Gaps = 44/285 (15%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVL--------------------------AHLK 50
                 A ++ G K   +    DR +  VL                          A + 
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRELKHVLLADESICIGRPASTESYLNVPAIIAAAEVT 73

Query: 51  PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
             +A +  +G   E+     ++E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  GAVAIHPGYGFLSENADFAEVVEKSGFIFIGPRAETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 ILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDL-----LQSSSW 160
                             I  P +IK   GG   G+ V++ +  +   +          +
Sbjct: 134 SDGPVDNDAKHNAAIAKRIGYPVIIKAAGGGGGRGMRVVRNEAELAGAIALTKSEAGQFF 193

Query: 161 NHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIP 220
            +    + +   +   +   V+ D   +   +            +             I 
Sbjct: 194 KNDMVYMEKYLENPRHIEIQVLADGQGNALYLGERDCSMQ----RRHQKVVEEAPAPGIT 249

Query: 221 LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            ++ K +      A   IG RG    +FL+   + + +++E+N +
Sbjct: 250 AEMRKFIGERCVRACIEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319744337|gb|EFV96699.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae ATCC 13813]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +     I  P ++K   GG   GI  +K    +      +S      + +G 
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+   +  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVLEESPSVAIGNTLRQQIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAEAVS----YENAGTIEFLLDENSGQFYFMEMNTR 293


>gi|259015977|gb|ACV89271.1| putative CAD trifunctional protein [Kempynus sp. BMW-2009]
          Length = 638

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 50  SGSQAIKALREENIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIRSERPGGVLL 109

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 110 TFGGQTALNCGVELERAKVFEKYNCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 169

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG      ++ +    L   +  H  QL+I++
Sbjct: 170 VYSVGEALEAAEVLGYPVMARAAFSLGGLGSGFANTNEELKT--LAVQALAHSSQLIIDK 227

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +P   Y  ++  
Sbjct: 228 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLPNREYNMLRTT 286

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 287 AIKVIRHFGVVGECNIQYALNPHSEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 342

Query: 291 WM 292
            +
Sbjct: 343 KL 344


>gi|218526196|gb|ACK86505.1| carbamoyl-phosphate synthase [Kempynus kimminsi]
          Length = 711

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL +   +   I+ +                       V  V+   +P     
Sbjct: 120 SGSQAIKALREENIQTVLINPNIATVQTSRGLADKVYFLPLVPEYVEQVIRSERPGGVLL 179

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     + E        + I +   + D+    + ++     V    +
Sbjct: 180 TFGGQTALNCGVELERAKVFEKYNCKILGTPIQSIIETEDRKIFAERINEIGEKVAPSAA 239

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++  ++  P + +       LG      ++ +    L   +  H  QL+I++
Sbjct: 240 VYSVGEALEAAEVLGYPVMARAAFSLGGLGSGFANTNEELKT--LAVQALAHSSQLIIDK 297

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +P   Y  ++  
Sbjct: 298 SLKGW-KEVEYEVVRDAFDNCITVCNMENVDPLGIHTGESIVVAPSQTLPNREYNMLRTT 356

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 357 AIKVIRHFGVVGECNIQYALNPHSEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 412

Query: 291 WM 292
            +
Sbjct: 413 KL 414


>gi|257057336|ref|YP_003135168.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
 gi|256587208|gb|ACU98341.1| acetyl/propionyl-CoA carboxylase, alpha subunit [Saccharomonospora
           viridis DSM 43017]
          Length = 467

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/146 (13%), Positives = 44/146 (30%), Gaps = 7/146 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS---SWNHGDQLLIEQYVDGIEL 177
              I  P +IK + GG   G+ ++     +      +        GD  +  +       
Sbjct: 157 ASEIGFPLIIKAVAGGGGRGMTIVWNYDELVPAYHATRATAQTTFGDGRVYLERYCPQAR 216

Query: 178 TCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQA 237
              V   A        +   +      +            ++   +   +   A    +A
Sbjct: 217 HVEVQILADEHG--KVLHLGERDCSVQRRHQKLIEETPAPRLSQAVRNRLTEAAVQGAEA 274

Query: 238 IGCRGISRSDFLFDPLSRKVFWLEIN 263
           +G  G    +FL D    + +++E+N
Sbjct: 275 VGYTGAGTFEFLVD--GDECYFMEVN 298


>gi|164420125|gb|ABY55004.1| carbamoylphosphate synthetase [Pterostichus nigrocaeruleus]
          Length = 729

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 128 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 187

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 188 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 247

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 248 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 305

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 306 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 364

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + F +E+N +  ++  S     +   GY    +  
Sbjct: 365 AINVIRHFGVVGECNIQYAVNPYTEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 420

Query: 291 WM 292
            +
Sbjct: 421 KL 422


>gi|164420123|gb|ABY55003.1| carbamoylphosphate synthetase [Pterostichus morionides]
          Length = 718

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 127 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 186

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 187 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 246

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 247 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 304

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 305 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 363

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + F +E+N +  ++  S     +   GY    +  
Sbjct: 364 AINVIRHFGVVGECNIQYAVNPYTEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 419

Query: 291 WM 292
            +
Sbjct: 420 KL 421


>gi|164420120|gb|ABY55002.1| carbamoylphosphate synthetase [Pterostichus lama]
          Length = 725

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 124 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 183

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 184 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 243

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 244 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 301

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 302 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 360

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + F +E+N +  ++  S     +   GY    +  
Sbjct: 361 AINVIRHFGVVGECNIQYAVNPYTEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 416

Query: 291 WM 292
            +
Sbjct: 417 KL 418


>gi|164420114|gb|ABY54999.1| carbamoylphosphate synthetase [Pterostichus adoxus]
          Length = 720

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+   +P     
Sbjct: 132 SGSQAIKALQEENIQTVLINPNIATVQTSKGLADKVYFLPLVPEYVEQVIRAERPGGVLL 191

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G D     I E   +    + I A   + D+    + +S     V    +
Sbjct: 192 TFGGQTGLNCGVDLQRAGIFEKYGVRILGTPIEAIIDTEDRKIFSERISVIGEKVAPSCA 251

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      +++   +  P + +       LG       + +    L   +  H  QL+I++
Sbjct: 252 VYSVPEAIEAAEKLGYPVMARAAFSLGGLGSGFADNKEELKT--LALQALAHSSQLIIDK 309

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 310 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYNLLRTT 368

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P + + F +E+N +  ++  S     +   GY    +  
Sbjct: 369 AINVIRHFGVVGECNIQYAVNPYTEEYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 424

Query: 291 WM 292
            +
Sbjct: 425 KL 426


>gi|149378054|ref|ZP_01895777.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
 gi|149357664|gb|EDM46163.1| acetyl-CoA carboxylase, biotin carboxylase [Marinobacter algicola
           DG893]
          Length = 473

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 46/147 (31%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K   GG   GI     ++ +  +  +  S         E +++   +  
Sbjct: 147 QAEDVGYPVMLKATSGGGGRGIRRCDNEKELRQNYERVISEATKAFGSAEVFLEKCIIEP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL-AFLAHQAI 238
             +    L      V         ++  +     V P+    +  +E     A    +  
Sbjct: 207 RHIEVQVLADHHGNVVHLYERDCSIQRRNQKLIEVAPSPQLSEEQRETIGELAIQVTRQC 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G       +FL D      +++E+N +
Sbjct: 267 GYVNAGTVEFLLD-HDDSFYFMEMNTR 292


>gi|51893320|ref|YP_076011.1| pyruvate carboxylase [Symbiobacterium thermophilum IAM 14863]
 gi|51857009|dbj|BAD41167.1| pyruvate carboxylase [Symbiobacterium thermophilum IAM 14863]
          Length = 1148

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/147 (14%), Positives = 51/147 (34%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               +  P ++K + GG   G+ V++ D  +   L ++ S         E Y++      
Sbjct: 153 FAREVGYPIIVKAVLGGGGRGMRVVRSDAELKDALERARSEAQAAFGSGEVYLEEYVERP 212

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAI 238
             +    +      V         ++        + P+    +   +E+   A      +
Sbjct: 213 RHIEVQVMADRYGNVVHLYERDCSIQRRHQKVVEIAPSLALTEPQRQEICGAAVRLMARV 272

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +FL  P   + +++E+N +
Sbjct: 273 GYVGAGTVEFLVAP-DGRYYFMEVNPR 298


>gi|50121070|ref|YP_050237.1| urea amidolyase [Pectobacterium atrosepticum SCRI1043]
 gi|49611596|emb|CAG75044.1| urea amidolyase [Pectobacterium atrosepticum SCRI1043]
          Length = 1204

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 18/146 (12%), Positives = 41/146 (28%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG  +G+       ++                    +++       
Sbjct: 147 ADEIGYPVMLKSTAGGGGIGLTRCADAAALHAAWESVRRLGEQFFSDAGVFLERCIDRAR 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAF-LAHQAIG 239
            +        +  V         L+  +       PA    +  +     A     + + 
Sbjct: 207 HVEVQIFGDGKGRVVALGERDCSLQRRNQKVVEETPAPHLPETTRAALLAAAVKLGELVS 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            R     +F++D      F+LE+N +
Sbjct: 267 YRSAGTVEFIYDAERDAFFFLEVNTR 292


>gi|117920116|ref|YP_869308.1| 3-methylcrotonoyl-CoA carboxylase subunit alpha [Shewanella sp.
           ANA-3]
 gi|117612448|gb|ABK47902.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella sp.
           ANA-3]
          Length = 674

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 49/150 (32%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              I  P +IK   GG   G+ +++ +  I   +  +       + +   L+        
Sbjct: 148 ALKIGFPMLIKAAYGGGGKGMRIVEHEGEIMDAINSARREAASSFGNDKLLMERYLRQPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V  D   +   ++           +             +  ++  ++   A  A 
Sbjct: 208 HVEVQVFADTFGNAIYLSDRDCSIQ----RRHQKVVEEAPAPGLSDELRTQMGEAAVAAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +AI   G    +FL D      +++E+N +
Sbjct: 264 KAIDYVGAGTVEFLLDT-DNSFYFMEMNTR 292


>gi|145628091|ref|ZP_01783892.1| biotin carboxylase subunit [Haemophilus influenzae 22.1-21]
 gi|145630067|ref|ZP_01785849.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145638206|ref|ZP_01793816.1| biotin carboxylase subunit [Haemophilus influenzae PittII]
 gi|144979866|gb|EDJ89525.1| biotin carboxylase subunit [Haemophilus influenzae 22.1-21]
 gi|144984348|gb|EDJ91771.1| acetyl-CoA carboxylase [Haemophilus influenzae R3021]
 gi|145272535|gb|EDK12442.1| biotin carboxylase subunit [Haemophilus influenzae PittII]
 gi|309751361|gb|ADO81345.1| Acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae R2866]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 SILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                              I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLSDTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|313900008|ref|ZP_07833508.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           HGF2]
 gi|312955060|gb|EFR36728.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Clostridium sp.
           HGF2]
          Length = 455

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 30/217 (13%), Positives = 71/217 (32%), Gaps = 9/217 (4%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     ++    + +            DK  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENAKFARLVLQCGLIFVGPNPDVIEQMGDKNNARRCMMEAGVPVIPGSKD 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +   +        I  P +IK   GG   G+      + +      + +    +     
Sbjct: 137 LLETVQDAAAMAEKIGYPVLIKASSGGGGRGMRRADCAEELADAFDTAKAEARANFGDDA 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
            Y++   +    +    +      V          +  +       P  I  + + + + 
Sbjct: 197 VYMEKFIVEPKHVEVQLMADKHGNVVHLYERDCSCQRRNQKLLEEAPCHILEEDVREHLL 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           R A  A +++G   +   +FL D    + +++E+N +
Sbjct: 257 RDAVRAAESVGYDSVGTIEFLLDAR-GEYYFMEMNTR 292


>gi|309389372|gb|ADO77252.1| pyruvate carboxylase [Halanaerobium praevalens DSM 2228]
          Length = 1143

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/281 (14%), Positives = 83/281 (29%), Gaps = 35/281 (12%)

Query: 19  GKACASALEDAGFKVSQID------------------VDRSVGLVLAHLKPDLAFN---- 56
                 A ++ G +   I                   +  + G + A+L  D   +    
Sbjct: 17  AIRVIRACKELGIRTVAIYSEEDRTALFRTKADEAYQIGNNKGPIEAYLAIDEIIDLALK 76

Query: 57  ----VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
                +H   G   E+       E   I +            DK++SK +    GVP  P
Sbjct: 77  KDVDAIHPGYGFLAENPEFVRQCEEAGIKFIGPDAEVMEKLGDKIKSKILAQEFGVPTIP 136

Query: 110 S----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                I               P ++K   GG   G+ +++ D+ +      +        
Sbjct: 137 GLEKPIKKEDEIKKFAEKHGYPLMLKAAAGGGGRGMRIVRSDKELISQFRDAKEEARKAF 196

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
            + + +V+        +    L   +  +         ++          PA    D  +
Sbjct: 197 GVDDIFVERYLEAPKHIEVQILGDEQGNIVHLFERDCSIQRRHQKIVEFTPAVSLSDQKR 256

Query: 226 EVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           E   + A    +  G +     +FL D  +   +++E+N +
Sbjct: 257 EEILQDALKLCEGAGYKNAGTVEFLVDQANNH-YFIEVNPR 296


>gi|126727459|ref|ZP_01743293.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
 gi|126703239|gb|EBA02338.1| propionyl-CoA carboxylase, alpha subunit [Rhodobacterales bacterium
           HTCC2150]
          Length = 666

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/233 (13%), Positives = 69/233 (29%), Gaps = 7/233 (3%)

Query: 38  VDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSK 97
           V  +V   +     +      +G   E+      L    + +    + A     DK+ SK
Sbjct: 62  VIENVMKAIRETGAEAVHPG-YGFLSENSKFAEALSAEGVAFIGPPVGAIEKMGDKITSK 120

Query: 98  QVVSSCGVPVCPSILVNRFTMDSQ----HLISPPYVIKPLKGGSSLGIIVIKKDQSIPLD 153
           ++    GV   P  +      D      + I  P ++K   GG   G+ +   D      
Sbjct: 121 KIAMDAGVSTVPGYMGLIADADEAVKISNEIGYPVMLKASAGGGGKGMRIAWNDTEAREG 180

Query: 154 LLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
              S +           +++        +    L  +             ++  +     
Sbjct: 181 FQSSKNEAAKSFGDDRIFIEKFVTQPRHIEIQVLADSHGNCIYLGERECSIQRRNQKVIE 240

Query: 214 VLPAKIPLDIYKEVQ-RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             P+    +  ++     A     A+        +F+ D   R  ++LE+N +
Sbjct: 241 EAPSPFLDEATRKAMGEEACSLASAVDYTSAGTVEFIVDG-DRNFYFLEMNTR 292


>gi|90961435|ref|YP_535351.1| biotin carboxylase [Lactobacillus salivarius UCC118]
 gi|90820629|gb|ABD99268.1| Biotin carboxylase [Lactobacillus salivarius UCC118]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 97/314 (30%), Gaps = 45/314 (14%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHL-------KP-DLAFN-------------- 56
              +L++ G K   I       S+ + LA         +P D   N              
Sbjct: 17  IIRSLKELGIKSVAIYSTVDRESLHVQLADEAVCVGTARPQDSYLNMKNILAAAIGTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + E + I +         L  +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSQFVEMCEAVGITFIGPNSEIIDLMGNKANAREQMQKSGVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I          + +  P ++K   GG   GI  +  D  +     ++            
Sbjct: 137 FIETVEEAKKVANKVGYPVLLKAAAGGGGKGIRKVNDDNELTSLFEEAKREAQVSFGDKR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-Q 228
            Y++ I      +        +  V         ++ +        P  +  +  ++   
Sbjct: 197 MYLEKIMTNVKHIEVQIFRDKQGNVVYFPERDCSVQRNKQKMIEESPCLLITEEQRKELG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM--TPVSIFPEMAAYAGYSFR 286
            +A  A  AI        +FL D      +++E+N +  +  T   +        G    
Sbjct: 257 NIAIKAANAINYVNTGTIEFLMDSQHN-FYFMEMNTRIQVEHTVTEMV------TGI--- 306

Query: 287 ELLLWMVEDASCLR 300
           +L+   V+ AS  R
Sbjct: 307 DLVKAQVKVASGER 320


>gi|297688050|ref|XP_002821501.1| PREDICTED: LOW QUALITY PROTEIN: pyruvate carboxylase,
           mitochondrial-like [Pongo abelii]
          Length = 1182

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 31/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            + GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 IAAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEENYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRTRLTGDSVKLAKQVGYENAGTVEFLVDRH-GKHYFIEVNSR 328


>gi|219130617|ref|XP_002185458.1| biotin carboxylase [Phaeodactylum tricornutum CCAP 1055/1]
 gi|217403172|gb|EEC43127.1| biotin carboxylase [Phaeodactylum tricornutum CCAP 1055/1]
          Length = 2282

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 50/146 (34%), Gaps = 5/146 (3%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLL-IEQYVDGIELTC 179
              I  P +IK  +GG   GI  +     +     Q      G  +  ++       L  
Sbjct: 217 AAKIGFPVMIKASEGGGGKGIRKVLHADDVATAYRQVCGEVPGSPIFLMKLAQKARHLEV 276

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIG 239
            ++ D       +            +          P     D++K+++  A    +A+ 
Sbjct: 277 QLLADEYGHALALNGRDCSVQ----RRHQKIIEEGPPVAAAPDVWKQMEASAVALAKAVS 332

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  ++L++  ++K ++LE+N +
Sbjct: 333 YANAGTVEYLYEEDTQKFYFLELNPR 358


>gi|167523996|ref|XP_001746334.1| hypothetical protein [Monosiga brevicollis MX1]
 gi|163775096|gb|EDQ88721.1| predicted protein [Monosiga brevicollis MX1]
          Length = 641

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 29/193 (15%), Positives = 60/193 (31%), Gaps = 30/193 (15%)

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNH---------GDQLLIE 169
                +  P +IK +KGG   G+ V+  +      L  + +               L+  
Sbjct: 146 QQAREVGFPVLIKAVKGGGGKGMRVVMNEADFAESLDMAQACYFAEARKHFGDDRVLIER 205

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
                  +   V  D   +   +            +             +  +  + +  
Sbjct: 206 YVQRPRHVEVQVFADQHGNAVHLFERDCSLQ----RRHQKVIEEAPAPGLRPETRQAMGE 261

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINV-----QPGMTPVSIFPEMAAYAGYS 284
            A  A  A+G  G    +F+ D ++++ F++E+N       P         EM      +
Sbjct: 262 AAVRAALAVGYEGAGTVEFIMDTVTQEFFFMEMNTRLQVEHP-------VTEM-----VT 309

Query: 285 FRELLLWMVEDAS 297
             +L+ W +  AS
Sbjct: 310 QTDLVEWQLRVAS 322


>gi|161899042|ref|YP_198342.2| carbamoyl phosphate synthase large subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 1084

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 86/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLV------------LAHLKPDLAFN 56
           SG      L++  +KV  +         D + S                +   KPD    
Sbjct: 29  SGTQSCKVLKNENYKVILVNSNPATIMTDPEFSDATYIEPILPEIIEEIIIKEKPDAILP 88

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 89  TMGGQTALNCAMKLADDGVLDKYNVKLIGVNREAIKKAEDRELFRQSMDKIGLKYPRSII 148

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L     P +I+        G  +    +     +  +   +  +++ +++
Sbjct: 149 IKNREQIKEALDYVGLPAIIRSSFTLGGAGSGIAYNKKEFFNIVENALKVSPINEVQVDE 208

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 209 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDAEYQQMRNAS 268

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   ++ 
Sbjct: 269 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVA 324

Query: 290 LWM 292
             +
Sbjct: 325 TKL 327



 Score = 38.7 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 10/175 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  P V++P        + +    +S    +L  +       LL+++++       
Sbjct: 719 NAEKVGFPLVVRPSYVLGGQSMSIKHDIESFKEYVLGQTKIFEHGPLLLDKFL---VNAV 775

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
            V  DA  D  ++ +     +  E    S +ST  +P      ++ KE++         +
Sbjct: 776 EVDVDAICDGEKVFIAAVMEHIEEAGIHSGDSTCSIPTNTLNDEVVKEIELQTERVALEL 835

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             RG+    F        ++ LE+N    +      P ++        +L   ++
Sbjct: 836 KVRGLINIQFAI--QENDIYILEVN----LRASRTVPFISKVINVPIAKLATQVI 884


>gi|89901587|ref|YP_524058.1| carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
 gi|89346324|gb|ABD70527.1| Carbamoyl-phosphate synthase L chain, ATP-binding [Rhodoferax
           ferrireducens T118]
          Length = 654

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 49/146 (33%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K + GG   G+ ++++   I   ++ +              ++ +     
Sbjct: 149 ALKLGFPLLVKAVAGGGGRGMRLVREAGEIKQAIVAARREAQSAFGDGTLMLERLIDNGR 208

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +                      +          P+ +    + + + + A  A  A+G
Sbjct: 209 HIEIQVFADAHGHAVYLGERDCTAQRRRQKVIEEAPSPVVNAALRESMGKDAVAAALAVG 268

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
            RG    +F+ D    K ++LE+N +
Sbjct: 269 YRGAGTVEFIVDA-DLKHYFLEMNTR 293


>gi|284008664|emb|CBA75302.1| biotin carboxylase [Arsenophonus nasoniae]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/281 (12%), Positives = 76/281 (27%), Gaps = 36/281 (12%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLKPDLAFNVL------------------ 58
                 A ++   +   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELKIQTVAVHSAADRDLKHVLLADETVCIGPAASAESYLNIPAIISAAEIT 73

Query: 59  --------HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS 110
                   +G   E+      +E     +         L  DK+ + + +   GVP  P 
Sbjct: 74  AAEAIHPGYGFLSENADFAEKVERSGFIFIGPKPETIRLMGDKVSAIEAMKKAGVPCVPG 133

Query: 111 -----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ 165
                    +      + I  P +IK   GG   G+ V++ +  +   +  + +      
Sbjct: 134 SDGPLGNDIKTNKTIANRIGYPVIIKASGGGGGRGMRVVRNESDLEQAITLTRAEAKAAF 193

Query: 166 LLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYK 225
                Y++        +    L   +            ++          PA       +
Sbjct: 194 NNSMVYMEKFLENPRHIEIQVLADGQGNAIYLAERDCSMQRRHQKVVEEAPAPGIKADMR 253

Query: 226 EVQRLAFLAHQ-AIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +            I  RG    +FL+   + + +++E+N +
Sbjct: 254 KSIGERCAKACLDIDYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|42794965|gb|AAS45838.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
 gi|42794967|gb|AAS45839.1| putative D-alanine:D-alanine ligase [Clostridium difficile]
          Length = 141

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 4/131 (3%)

Query: 124 ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGV-- 181
           ++ P  IKP++ GSS GI  I K + + + +  +    H ++++IE+ +DG E+ C V  
Sbjct: 13  LTYPLFIKPVRAGSSFGISKIYKKEELQVAVDLAF--EHDNEVIIEENIDGFEVGCAVLG 70

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
             D  +   +       F+ Y  KY+  +S   +PA+I LD  K +Q  A + ++ +GC 
Sbjct: 71  NNDLLVGRVDEIELSKGFFDYTEKYTLKSSKIHMPARIDLDCEKRIQETAKIIYRTLGCS 130

Query: 242 GISRSDFLFDP 252
           G +R D    P
Sbjct: 131 GFARVDMFLTP 141


>gi|70731298|ref|YP_261039.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
 gi|68345597|gb|AAY93203.1| biotin carboxylase/biotin-containing subunit [Pseudomonas
           fluorescens Pf-5]
          Length = 648

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 26/146 (17%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   G+ V++    +   L  +              V+   L   
Sbjct: 152 AERIGYPVLLKATAGGGGKGMKVVEDVSQLAEALASAQREAQSSFGDSRMLVEKYLLKPR 211

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +               +     ++          PA      + K +   A  A QAIG
Sbjct: 212 HVEIQVFADQHGNCLYLNERDCSIQRRHQKVVEEAPAPGLSPQLRKAMGEAAVRAAQAIG 271

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D    + F++E+N +
Sbjct: 272 YVGAGTVEFLLDAR-GEFFFMEMNTR 296


>gi|58419085|gb|AAW71100.1| Carbamoylphosphate synthase large subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 1096

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 34/303 (11%), Positives = 86/303 (28%), Gaps = 32/303 (10%)

Query: 18  SGKACASALEDAGFKVSQI---------DVDRSVGLV------------LAHLKPDLAFN 56
           SG      L++  +KV  +         D + S                +   KPD    
Sbjct: 41  SGTQSCKVLKNENYKVILVNSNPATIMTDPEFSDATYIEPILPEIIEEIIIKEKPDAILP 100

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSIL 112
            + G              +L+   +        A   + D+   +Q +   G+    SI+
Sbjct: 101 TMGGQTALNCAMKLADDGVLDKYNVKLIGVNREAIKKAEDRELFRQSMDKIGLKYPRSII 160

Query: 113 VNRFTMDSQHLIS--PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +       + L     P +I+        G  +    +     +  +   +  +++ +++
Sbjct: 161 IKNREQIKEALDYVGLPAIIRSSFTLGGAGSGIAYNKKEFFNIVENALKVSPINEVQVDE 220

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G +     +     D   I     +     +      +          +  +     
Sbjct: 221 SIIGWKEYEMEVIRDCKDNCIIVCSIENVDPMGVHTGDSITVAPALTLRDAEYQQMRNAS 280

Query: 231 AFLAHQAIGCRGISRSDFLFDPL-SRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELL 289
             +  +     G +   F  +P     +  +E+N  P ++  S     +   GY   ++ 
Sbjct: 281 IAVLREIDVSAGGANVQFAVNPKEDGSLVVIEMN--PRVSRSS--ALASKATGYPIAKVA 336

Query: 290 LWM 292
             +
Sbjct: 337 TKL 339



 Score = 38.7 bits (88), Expect = 1.0,   Method: Composition-based stats.
 Identities = 26/175 (14%), Positives = 61/175 (34%), Gaps = 10/175 (5%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
           +   +  P V++P        + +    +S    +L  +       LL+++++       
Sbjct: 731 NAEKVGFPLVVRPSYVLGGQSMSIKHDIESFKEYVLGQTKIFEHGPLLLDKFL---VNAV 787

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
            V  DA  D  ++ +     +  E    S +ST  +P      ++ KE++         +
Sbjct: 788 EVDVDAICDGEKVFIAAVMEHIEEAGIHSGDSTCSIPTNTLNDEVVKEIELQTERVALEL 847

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMV 293
             RG+    F        ++ LE+N    +      P ++        +L   ++
Sbjct: 848 KVRGLINIQFAI--QENDIYILEVN----LRASRTVPFISKVINVPIAKLATQVI 896


>gi|77409217|ref|ZP_00785926.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae COH1]
 gi|77172160|gb|EAO75320.1| acetyl-CoA carboxylase, biotin carboxylase [Streptococcus
           agalactiae COH1]
          Length = 456

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/221 (14%), Positives = 71/221 (32%), Gaps = 16/221 (7%)

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E + + +            DK+ ++  +    VPV P    
Sbjct: 77  AVHPGFGFLSENSKFATMCEEMNLKFIGPSGEVMDKMGDKINARAEMIKADVPVIPGSDG 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGD 164
            +      +     I  P ++K   GG   GI  +K    +      +S      + +G 
Sbjct: 137 QVTSVEEAVSIAEEIGYPLMLKASAGGGGKGIRKVKSADELKPAFESASQEALAAFGNGA 196

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
             + +       +   ++GD+   +  +            K    + +  +   +   I 
Sbjct: 197 MYIEKVIYPARHIEVQILGDSFGKIVHLGERDCSLQRNNQKVLEESPSVAIGNTLRQQIG 256

Query: 225 KEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +   R A               +FL D  S + +++E+N +
Sbjct: 257 EAAVRAAEAVS----YENAGTIEFLLDENSGQFYFMEMNTR 293


>gi|256832530|ref|YP_003161257.1| pyruvate carboxylase [Jonesia denitrificans DSM 20603]
 gi|256686061|gb|ACV08954.1| pyruvate carboxylase [Jonesia denitrificans DSM 20603]
          Length = 1132

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 40/251 (15%), Positives = 80/251 (31%), Gaps = 18/251 (7%)

Query: 32  KVSQI-DVDRSVGLVLAHLKP---------DLAFNVLHGNFGEDGLVQAILELLEIPYTH 81
           +   I D  + V   L   +          D  +   +G   E+           + +  
Sbjct: 47  EAYLIGDPGQPVRAYLNIEEIIRVAELAGADAVYPG-YGFLSENPQFARACRDKGLTFVG 105

Query: 82  SGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT---MDSQHLISPPYVIKPLKGGSS 138
                  L+ +K+ + +     G+PV  S   +      M + H I  P   K + GG  
Sbjct: 106 PPAEVLELAGNKVAALKAAREAGIPVLASSEPSSDIEYLMSAAHEIGFPVFCKAVAGGGG 165

Query: 139 LGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSD 198
            G+  + + + +   L  +     G       +V+   L    +    L   +  V    
Sbjct: 166 RGMRRVDRPEDLQQSLESAMREAEGAFGDPTMFVEQAVLRPRHIEVQILADGQGNVVHLF 225

Query: 199 FYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLS--- 254
                ++        + PA     DI   + R A    ++IG +     +FL D      
Sbjct: 226 ERDCSVQRRHQKVIEIAPAPNLDPDIRDALCRDAVKFAKSIGYQNAGTVEFLVDTAGERA 285

Query: 255 RKVFWLEINVQ 265
            +  ++E+N +
Sbjct: 286 GQHVFIEMNPR 296


>gi|198428375|ref|XP_002119231.1| PREDICTED: similar to MGC81895 protein, partial [Ciona
           intestinalis]
          Length = 727

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQ----SIPLDLLQSSSWNHGDQLLIEQYVD-GI 175
            H I  P +IK ++GG   G+ +          +     ++      D +L+E+YVD   
Sbjct: 193 AHGIGFPVMIKAVRGGGGKGMRIATSRDVFLEQLSSARSEAIKSFGDDVMLVEKYVDRPR 252

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V GD   +   +            K    +    +  +   ++ +   R A    
Sbjct: 253 HVEVQVFGDHHGNAVHLFERDCSVQRRHQKVIEESPAPGISLRTRTNLGEAAVRAARAV- 311

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
              G  G    +F+ DP     +++E+N +
Sbjct: 312 ---GYVGAGTVEFVMDPQQN-FYFMEMNTR 337


>gi|194218512|ref|XP_001917468.1| PREDICTED: pyruvate carboxylase [Equus caballus]
          Length = 1178

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 32/230 (13%), Positives = 69/230 (30%), Gaps = 7/230 (3%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +  V      D      +G   E        +   + +            DK+ ++ + 
Sbjct: 101 DIIKVAKENNVDAVHPG-YGFLSERADFAQACQDAGVRFIGPSPEVVRKMGDKVEARAIA 159

Query: 101 SSCGVPVCPSILVNRFTMDSQHLIS----PPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
            S GVPV P       ++   H  S     P + K   GG   G+ V+   + +  +  +
Sbjct: 160 ISAGVPVVPGTDAPITSLHEAHEFSNTYGFPIIFKAAYGGGGRGMRVVHSYEELEDNYTR 219

Query: 157 SSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLP 216
           + S           +V+        +    L      +         ++        + P
Sbjct: 220 AYSEALAAFGNGALFVEKFIEKPRHIEVQILGDQYGNILHLYERDCSIQRRHQKVVEIAP 279

Query: 217 AKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           A      +   +   +    + +G       +FL D    K +++E+N +
Sbjct: 280 AAHLDPQLRARLTGDSVKLAKQVGYENAGTVEFLVDKH-GKHYFIEVNSR 328


>gi|150006750|ref|YP_001301493.1| putative biotin carboxylase 1 [Parabacteroides distasonis ATCC
           8503]
 gi|256842267|ref|ZP_05547771.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|262384827|ref|ZP_06077959.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp.
           2_1_33B]
 gi|149935174|gb|ABR41871.1| putative biotin carboxylase 1 [Parabacteroides distasonis ATCC
           8503]
 gi|256736151|gb|EEU49481.1| acetyl-CoA carboxylase, biotin carboxylase [Parabacteroides sp.
           D13]
 gi|262293543|gb|EEY81479.1| acetyl-CoA carboxylase, biotin carboxylase [Bacteroides sp.
           2_1_33B]
          Length = 503

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 9/181 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K L GG   G+ ++  +  +      S S           Y++       
Sbjct: 147 AAEVGYPIMLKALAGGGGKGMRLVHSEDEMEAAFRMSRSEAANSFGNDAIYIEKYIENPH 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++  +       P+    +  ++    +A  A + IG
Sbjct: 207 HIEVQVLGDKYGNVIHLYERECSIQRRNQKVIEEAPSPFVKEAARQKMLAVAVEACKKIG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +F+ D   +  ++LE+N +  +    +  E     G    +L+  M+  A+  
Sbjct: 267 YYSAGTLEFMMD-KDQNFYFLEMNTR--LQVEHLVTE--ETTGV---DLVRDMILVAAGN 318

Query: 300 R 300
           R
Sbjct: 319 R 319


>gi|156740980|ref|YP_001431109.1| carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
 gi|156232308|gb|ABU57091.1| Carbamoyl-phosphate synthase L chain ATP-binding [Roseiflexus
           castenholzii DSM 13941]
          Length = 659

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 19/146 (13%), Positives = 47/146 (32%), Gaps = 1/146 (0%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ ++++   +P  +  +             +++ +     
Sbjct: 148 AERIGFPLLIKASAGGGGRGMRIVQRADDLPAAVESARREARAAFGDDTIFLEKLLARPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +    L  +             ++          P+ +      + +   A    +A G
Sbjct: 208 HIEVQILADSHGNYVYLFERECSIQRRHQKIVEESPSPVLTARQREMIGEAAVRLARAAG 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                 ++FL+D       +LE+N +
Sbjct: 268 YVNAGTAEFLYDETDGSFAFLEVNTR 293


>gi|111021199|ref|YP_704171.1| acetyl/propionyl-CoA carboxylase alpha subunit [Rhodococcus jostii
           RHA1]
 gi|110820729|gb|ABG96013.1| probable acetyl/propionyl-CoA carboxylase alpha subunit
           [Rhodococcus jostii RHA1]
          Length = 1828

 Score = 44.5 bits (103), Expect = 0.017,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 77/232 (33%), Gaps = 10/232 (4%)

Query: 41  SVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVV 100
            +   L   K D  + V  G   ED     + E L I +      +  L  DK+ +K + 
Sbjct: 71  ELARALRESKADAVW-VGWGFVAEDPAFVEVCEQLGITFIGPPAESMRLLGDKVEAKLLA 129

Query: 101 SSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQ 156
               VPV P     +            I  P +IK   GG   GI  +  +  + L L +
Sbjct: 130 EKVEVPVAPWSGGPVATRADARRHAQAIGYPLIIKARSGGGGRGIRKVWSEDELELALER 189

Query: 157 SS---SWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTH 213
           +      + GD ++  + +        V   A                   + +      
Sbjct: 190 TQGEAQRSFGDPVVFIERLVTDARHVEVQVIADNFG--NVWAPGVRDCSIQRKNQKVIEE 247

Query: 214 VLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
                +  +    ++ ++    +A G RG    ++L+ P  +   +LE+N +
Sbjct: 248 SSSPLLTTEQANHLRTVSAELVRAAGYRGAGTVEYLYQPEQKTFTFLEVNTR 299


>gi|302333280|gb|ADL23473.1| acetyl-CoA carboxylase biotin carboxylase subunit, AccC_1
           [Staphylococcus aureus subsp. aureus JKD6159]
          Length = 453

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|301169696|emb|CBW29297.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Haemophilus
           influenzae 10810]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 SILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                              I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|282916875|ref|ZP_06324633.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283770680|ref|ZP_06343572.1| accC acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus H19]
 gi|282319362|gb|EFB49714.1| accC; acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus D139]
 gi|283460827|gb|EFC07917.1| accC acetyl-CoA biotin carboxylase [Staphylococcus aureus subsp.
           aureus H19]
          Length = 453

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 41/275 (14%), Positives = 76/275 (27%), Gaps = 35/275 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHL-----------------KPDLAF--------N 56
              A  + G +   +        +  HL                   D           N
Sbjct: 16  IIRACREYGIETVAVYAKGDEQSLHVHLADQAICIGEANALDSYLNIDRIISAAQITGAN 75

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P    
Sbjct: 76  AIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSNG 135

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            +            I  P VIK   GG   GI ++KK + +     ++ S          
Sbjct: 136 AVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDDR 195

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
            YV+        +    +   +            ++  +       P     +  ++   
Sbjct: 196 VYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQIC 255

Query: 230 LA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                  +A   R     +FL    +   +++E+N
Sbjct: 256 NDAVKVARAANYRSAGTIEFLVTDTAH--YFIEMN 288


>gi|226939548|ref|YP_002794621.1| PurT [Laribacter hongkongensis HLHK9]
 gi|226714474|gb|ACO73612.1| PurT [Laribacter hongkongensis HLHK9]
          Length = 400

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 42/275 (15%), Positives = 84/275 (30%), Gaps = 34/275 (12%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A AL+  G +V  +D            RS          +  ++   +P L    +
Sbjct: 23  GKEVAIALQRLGCEVIAVDRYADAPAMQVAHRSHVIAMTDGAALRALVEAERPALIVPEI 82

Query: 59  HGNFGEDGLVQAILELLE-IPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFT 117
                   L      L E IP   +  L       +  + + +     P   +  ++   
Sbjct: 83  EAIATATLLEIEAAGLAEVIPTARAANLTMNREGIRRLAAEELGLPTSPYAFADSLDSLQ 142

Query: 118 MDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQ------LLIEQY 171
                 I  P V+KP+   S  G  V++    +      +++    D         ++  
Sbjct: 143 AAIDAGIGYPCVVKPVMSSSGKGQSVLRSPADVKPAWDYAAAGGRVDNGRVIVEGFVDFD 202

Query: 172 VDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLA 231
            +  +LT   +G           P            S     + P           + +A
Sbjct: 203 YEITQLTVRALGADGQPEIRFCEPVGHLQKNGDYVESWQPQPMSPLARERA-----RDVA 257

Query: 232 FLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQP 266
               +A+G RG+   +        +V++ E++ +P
Sbjct: 258 GRVVEALGGRGLFGVELFV--KGDEVWFSEVSPRP 290


>gi|154484992|ref|ZP_02027440.1| hypothetical protein EUBVEN_02710 [Eubacterium ventriosum ATCC
           27560]
 gi|149733945|gb|EDM50064.1| hypothetical protein EUBVEN_02710 [Eubacterium ventriosum ATCC
           27560]
          Length = 451

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/277 (12%), Positives = 76/277 (27%), Gaps = 35/277 (12%)

Query: 22  CASALEDAGFKVSQIDVDRSVGLVLAHLKPDLAFN------------------------- 56
              A  + G +   +        +   L  +                             
Sbjct: 17  IIRACREMGIETVAVYSKADKDALHTQLADEAICIGETKASESYLNMESIISATIATGAD 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS--- 110
            +H   G   E+     + E   I +            +K  +++ +    VPV P    
Sbjct: 77  AIHPGFGFLSENSKFARLCEQCNIIFIGPKSDVMYNLGNKSVARKTMIEANVPVIPGSEE 136

Query: 111 -ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I  ++        +  P +IK   GG   G+ V    +        +   +        
Sbjct: 137 QIYDSKTGKKIADQVGYPVIIKAALGGGGKGMRVAYDPEEFEQAFNAAKKESEAAFDDGT 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQ 228
            Y++        +    L      V         ++ +        P+ I   ++ K++ 
Sbjct: 197 MYIEHFVENPRHIEFQILADKFGNVIHLGERDCSIQRNHQKMIEESPSVILSDELRKKMG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             A  A +A         +FL D    K +++E+N +
Sbjct: 257 DTAVRAAKAAKYENAGTIEFLLDK--DKFYFMEMNTR 291


>gi|68249559|ref|YP_248671.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 86-028NP]
 gi|68057758|gb|AAX88011.1| biotin carboxylase [Haemophilus influenzae 86-028NP]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 80/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 S-----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                         +    I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVGNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLSDTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCAKACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|298377712|ref|ZP_06987663.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
 gi|298265415|gb|EFI07077.1| acetyl-CoA carboxylase, biotin carboxylase subunit [Bacteroides sp.
           3_1_19]
          Length = 503

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 27/181 (14%), Positives = 60/181 (33%), Gaps = 9/181 (4%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              +  P ++K L GG   G+ ++  +  +      S S           Y++       
Sbjct: 147 AAEVGYPIMLKALAGGGGKGMRLVHSEDEMEAAFRMSRSEAANSFGNDAIYIEKYIENPH 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V         ++  +       P+    +  ++    +A  A + IG
Sbjct: 207 HIEVQVLGDKYGNVIHLYERECSIQRRNQKVIEEAPSPFVKEAARQKMLAVAVEACKKIG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDASCL 299
                  +F+ D   +  ++LE+N +  +    +  E     G    +L+  M+  A+  
Sbjct: 267 YYSAGTLEFMMD-KDQNFYFLEMNTR--LQVEHLVTE--ETTGV---DLVRDMILVAAGN 318

Query: 300 R 300
           R
Sbjct: 319 R 319


>gi|303278200|ref|XP_003058393.1| pyruvate carboxylase [Micromonas pusilla CCMP1545]
 gi|226459553|gb|EEH56848.1| pyruvate carboxylase [Micromonas pusilla CCMP1545]
          Length = 1254

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/169 (13%), Positives = 51/169 (30%), Gaps = 13/169 (7%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
                  P ++K   GG   G+ +++    +     ++SS   G       +++      
Sbjct: 257 FAETFGFPIMLKAAMGGGGRGMRIVRTMNDLKEGFTRASSEALGAFGDGRMFLERYVEAP 316

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAI 238
             +    L      V         ++        + PA     ++ K +   A    + +
Sbjct: 317 RHIEVQILADAHGNVVHLAERDCSVQRRHQKVVELAPAAELSDELRKTLHDDAVRLAKHV 376

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRE 287
             R     +F+ D    + ++LE+N           P +    G    +
Sbjct: 377 DYRNAGTVEFMVDKE-GRHYFLEVN-----------PRIQEVTGIDLVQ 413


>gi|207722336|ref|YP_002252772.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
 gi|206587513|emb|CAQ18095.1| hypothetical protein RSMK04933 [Ralstonia solanacearum MolK2]
          Length = 390

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 43/197 (21%), Positives = 70/197 (35%), Gaps = 25/197 (12%)

Query: 124 ISPPYVIKPLKG-GSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVM 182
           ++ P VIKP++G GS    +V               S   GD L+ E ++ G ELT  V+
Sbjct: 186 LAFPLVIKPVRGRGSEGVTLVHDLPSMQRAAAGLLDSGAFGDALIAETFLAGEELTVTVL 245

Query: 183 GDASL-------------DVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQ 228
                                           Y    +   ++  LP +  +    + + 
Sbjct: 246 PRQDDLPAAFSSDTASALPPVRRFNHVDGVAPYNGAVAVTRNSVALPVEAAMAPEARALI 305

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMT---------PVSIFPEMAA 279
           R   LA+  +G R   R D   D         ++N++P MT           S+    A 
Sbjct: 306 RACLLAYDVVGARAPIRIDCRADAH-GAYQLFDLNMKPNMTGAGRPGREDQDSLSALAAR 364

Query: 280 YAGYSFRELLLWMVEDA 296
             G+ +RELL+ M+  A
Sbjct: 365 AVGWDYRELLVRMMGAA 381


>gi|158451305|gb|ABW39013.1| putative CAD trifunctional protein [Rothschildia orizaba]
          Length = 976

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSRIFEKYNVSVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   + +H DQL+I++
Sbjct: 496 VTTVEEALAAAVQIGYPVMARSAFSLGGLGSGFANNEEELRT--LAHHALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451131|gb|ABW38926.1| putative CAD trifunctional protein [Colias eurytheme]
          Length = 733

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 88/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I     +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELEKSKIFNKYNVSVLGTPIQSIVDTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +   +L   + +H +QL+I++
Sbjct: 496 VSSVEEALTAAIKIGYPVMARSAFSLGGLGSGFANNEEEL--KILAHQALSHSEQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451109|gb|ABW38915.1| putative CAD trifunctional protein [Automeris io]
          Length = 976

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 89/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGILL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+     K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSKIFEKYNVNVLGTPIQSIVNTEDRKIFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +      + +   I  P + +       LG      ++ +    L   +++H DQL+I++
Sbjct: 496 VTSVEEALVAAKNIGYPVMARSAFSLGGLGSGFANNEEEL--KALAHQAFSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|84310005|emb|CAI84700.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310007|emb|CAI84701.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310009|emb|CAI84702.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|84310011|emb|CAI84703.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
 gi|170293287|gb|ACB12692.1| D-alanine-D-alanine ligase [Lactobacillus plantarum]
          Length = 225

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 55/223 (24%), Positives = 98/223 (43%), Gaps = 10/223 (4%)

Query: 37  DVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRS 96
           D    +  +      D+ + V+HGN GEDG +Q + +LL+ PY  SG+LASA S DK  +
Sbjct: 3   DPLAPIKNLTLAKDIDIFYPVVHGNLGEDGTLQGLFKLLKKPYVGSGVLASAASFDKDIT 62

Query: 97  KQVVSSCGVPVCPSILVNRFTMDSQHLISP------PYVIKPLKGGSSLGIIVIKKDQS- 149
           KQ+++   +     ++V     D                IKP   GSS+GI   + +Q  
Sbjct: 63  KQILTHHHIQNTKYVVVTPENRDQMTYAYLQAHVGDHLFIKPANQGSSIGIHKAENEQEY 122

Query: 150 ---IPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKY 206
              +             + +   + V+   L       + L   ++    + +       
Sbjct: 123 LDGLADAFKYDYKILVEESIDNPREVECSILGNENPKASKLGAIDVPKTDTFYDYNNKFV 182

Query: 207 SSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFL 249
            +   T  LP ++P D+ K +Q+++  A +A+G +G++R DFL
Sbjct: 183 DASGVTFELPVELPADLTKRIQQMSLDAFKALGLKGMARVDFL 225


>gi|51595987|ref|YP_070178.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis IP 32953]
 gi|186895087|ref|YP_001872199.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis PB1/+]
 gi|81825841|sp|Q66BW5|PURT_YERPS RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788793|sp|B2K0H3|PURT_YERPB RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|51589269|emb|CAH20890.1| phosphoribosylglycinamide formyltransferase [Yersinia
           pseudotuberculosis IP 32953]
 gi|186698113|gb|ACC88742.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis PB1/+]
          Length = 393

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +             +    
Sbjct: 84  EAIATDMLVELEKMGQHVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTDSAFF 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ ++ +        +   G        ++G+   
Sbjct: 143 QAVRDIGYPCIVKPVMSSSGKGQSLIRSEEHLQAA--WEYAQQGGRAGSGRVIIEGLVHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     +  + ++     A+
Sbjct: 201 DFEITLLTIRAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDIALQRAKEISAQVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|16272909|ref|NP_439133.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae Rd KW20]
 gi|145632358|ref|ZP_01788093.1| acetyl-CoA carboxylase [Haemophilus influenzae 3655]
 gi|229843967|ref|ZP_04464108.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 6P18H1]
 gi|260580062|ref|ZP_05847892.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           RdAW]
 gi|1168279|sp|P43873|ACCC_HAEIN RecName: Full=Biotin carboxylase; AltName: Full=Acetyl-CoA
           carboxylase subunit A; Short=ACC
 gi|1573999|gb|AAC22632.1| acetyl-CoA carboxylase, biotin carboxylase (accC) [Haemophilus
           influenzae Rd KW20]
 gi|144987265|gb|EDJ93795.1| acetyl-CoA carboxylase [Haemophilus influenzae 3655]
 gi|229812961|gb|EEP48649.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae 6P18H1]
 gi|260093346|gb|EEW77279.1| acetyl-CoA carboxylase, biotin carboxylase [Haemophilus influenzae
           RdAW]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETICIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 SILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                              I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|153950504|ref|YP_001401320.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis IP 31758]
 gi|152961999|gb|ABS49460.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis IP 31758]
          Length = 393

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYANAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +             +    
Sbjct: 84  EAIATDMLVELEKMGQHVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTDSAFF 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ ++ +        +   G        ++G+   
Sbjct: 143 QAVRDIGYPCIVKPVMSSSGKGQSLIRSEEHLQAA--WEYAQQGGRAGSGRVIIEGLVHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     +  + ++     A+
Sbjct: 201 DFEITLLTIRAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDIALQRAKEISAQVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|22126414|ref|NP_669837.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis KIM
           10]
 gi|45441435|ref|NP_992974.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Microtus str. 91001]
 gi|108807143|ref|YP_651059.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Antiqua]
 gi|108812509|ref|YP_648276.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Nepal516]
 gi|145598636|ref|YP_001162712.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Pestoides F]
 gi|149366276|ref|ZP_01888311.1| phosphoribosylglycinamide formyltransferase [Yersinia pestis
           CA88-4125]
 gi|162420027|ref|YP_001606137.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Angola]
 gi|165927973|ref|ZP_02223805.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165938723|ref|ZP_02227278.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|166010919|ref|ZP_02231817.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166210985|ref|ZP_02237020.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|167402165|ref|ZP_02307640.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167420128|ref|ZP_02311881.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167425884|ref|ZP_02317637.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|167467437|ref|ZP_02332141.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           FV-1]
 gi|170024672|ref|YP_001721177.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis YPIII]
 gi|218928897|ref|YP_002346772.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           CO92]
 gi|229896215|ref|ZP_04511385.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Pestoides A]
 gi|229897149|ref|ZP_04512305.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229897876|ref|ZP_04513027.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229902892|ref|ZP_04518009.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Nepal516]
 gi|270486676|ref|ZP_06203750.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis KIM
           D27]
 gi|294504054|ref|YP_003568116.1| 5-phosphoribosylglycinamide transformylase [Yersinia pestis
           Z176003]
 gi|122979694|sp|Q1C8V8|PURT_YERPA RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123073322|sp|Q1CH54|PURT_YERPN RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|123777284|sp|Q7CHW4|PURT_YERPE RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|172044451|sp|A4TKC7|PURT_YERPP RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788794|sp|A9R5W9|PURT_YERPG RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|254788795|sp|B1JP38|PURT_YERPY RecName: Full=Phosphoribosylglycinamide formyltransferase 2;
           Short=GART 2; AltName: Full=5'-phosphoribosylglycinamide
           transformylase 2; AltName: Full=Formate-dependent GAR
           transformylase; AltName: Full=GAR transformylase 2
 gi|21959403|gb|AAM86088.1|AE013856_2 phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis KIM
           10]
 gi|45436296|gb|AAS61851.1| phosphoribosylglycinamide formyltransferase [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108776157|gb|ABG18676.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Nepal516]
 gi|108779056|gb|ABG13114.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Antiqua]
 gi|115347508|emb|CAL20416.1| phosphoribosylglycinamide formyltransferase [Yersinia pestis CO92]
 gi|145210332|gb|ABP39739.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Pestoides F]
 gi|149292689|gb|EDM42763.1| phosphoribosylglycinamide formyltransferase [Yersinia pestis
           CA88-4125]
 gi|162352842|gb|ABX86790.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Angola]
 gi|165913337|gb|EDR31959.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. IP275]
 gi|165920030|gb|EDR37331.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. F1991016]
 gi|165990263|gb|EDR42564.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. E1979001]
 gi|166208165|gb|EDR52645.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. B42003004]
 gi|166961823|gb|EDR57844.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. MG05-1020]
 gi|167048440|gb|EDR59848.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Antiqua str. UG05-0454]
 gi|167055283|gb|EDR65080.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Mediaevalis str. K1973002]
 gi|169751206|gb|ACA68724.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia
           pseudotuberculosis YPIII]
 gi|229680339|gb|EEO76438.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Nepal516]
 gi|229688917|gb|EEO80982.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. India 195]
 gi|229693486|gb|EEO83535.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Orientalis str. PEXU2]
 gi|229701138|gb|EEO89167.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           Pestoides A]
 gi|262361759|gb|ACY58480.1| 5-phosphoribosylglycinamide transformylase [Yersinia pestis
           D106004]
 gi|262366104|gb|ACY62661.1| 5-phosphoribosylglycinamide transformylase [Yersinia pestis
           D182038]
 gi|270335180|gb|EFA45957.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis KIM
           D27]
 gi|294354513|gb|ADE64854.1| 5-phosphoribosylglycinamide transformylase [Yersinia pestis
           Z176003]
 gi|320015494|gb|ADV99065.1| phosphoribosylglycinamide formyltransferase 2 [Yersinia pestis
           biovar Medievalis str. Harbin 35]
          Length = 393

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 31/273 (11%), Positives = 79/273 (28%), Gaps = 30/273 (10%)

Query: 19  GKACASALEDAGFKVSQID----------VDRS----------VGLVLAHLKPDLAFNVL 58
           GK  A   +  G +V  +D            RS          +  ++A  KP      +
Sbjct: 24  GKEVAIECQRLGLEVIAVDRYADAPAMHVAHRSHVINMLDGAALKQLVAQEKPHYIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                +  +    +    +P   +  L       +  + + +             +    
Sbjct: 84  EAIATDMLVELEKMGQHVVPCAEATRLTMNREGIRRLAAETLQLPT-SSYRFADTDSAFF 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P ++KP+   S  G  +I+ ++ +        +   G        ++G+   
Sbjct: 143 QAVRDIGYPCIVKPVMSSSGKGQSLIRSEEHLQAA--WEYAQQGGRAGSGRVIIEGLVHF 200

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +   ++   +     +     +            P  +     +  + ++     A+
Sbjct: 201 DFEITLLTIRAVDGIHFCAPIGHRQEDG--DYRESWQPQAMSDIALQRAKEISAQVVTAL 258

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP---GM 268
           G  G+   +         V + E++ +P   GM
Sbjct: 259 GGFGLFGVELFVCGDD--VIFSEVSPRPHDTGM 289


>gi|332528563|ref|ZP_08404551.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
 gi|332042074|gb|EGI78412.1| acetyl-CoA carboxylase, biotin carboxylase [Hylemonella gracilis
           ATCC 19624]
          Length = 682

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/187 (12%), Positives = 53/187 (28%), Gaps = 21/187 (11%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ V   D+          +           +++       
Sbjct: 148 AQKIGYPVMIKASAGGGGKGLRVAHNDKECFEGFTSCRNEARNSFGDDRVFMEKFVEEPR 207

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAIG 239
            +    L      V   +     ++          P+    D  ++     A    +A+ 
Sbjct: 208 HIEIQVLGDGHGNVIYLNERECSIQRRHQKVIEEAPSPFISDATRKAMGEQAVALAKAVK 267

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELLLWMV 293
            +     +F+     +  ++LE+N +              +       G    +L+  M+
Sbjct: 268 YQSAGTVEFVV-GKDQSFYFLEMNTR----------LQVEHPVTECITGL---DLVELMI 313

Query: 294 EDASCLR 300
             A+  +
Sbjct: 314 RVAAGEK 320


>gi|149181740|ref|ZP_01860232.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
 gi|148850588|gb|EDL64746.1| acetyl-CoA carboxylase [Bacillus sp. SG-1]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 53/150 (35%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSS-----SWNHGDQLLIEQYVDGI 175
              I  P ++K   GG  +G+I    +Q++      +       + H +  L +   +  
Sbjct: 147 AESIGYPVMLKASSGGGGIGMIRCNDEQALVQSFDSTKNRAKAYFGHDEVFLEKCIDNAR 206

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   + GD   ++  +            + +          ++  D  +++   A  A 
Sbjct: 207 HIEIQIFGDEKGNIIHLFERNCSVQ----RRNQKVIEEAPSPQLSQDAKEKMYEAAVRAG 262

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +A+        +F+ D      ++LE+N +
Sbjct: 263 KAVNYVNAGTVEFIVD-NDENFYFLEMNTR 291


>gi|33772548|gb|AAQ54673.1| carbamoylphosphate synthetase [Chromolepida pruinosa]
          Length = 480

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 91/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P+    
Sbjct: 147 SGSQAIKAMREEKIQTILINPNIATVQTSKGLADKVYFLPLTRDYVEQVIKAERPNGVLL 206

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + V+     V    +
Sbjct: 207 TFGGQTALNCGVELERAGIFEKYNVKILGTPIKSIIETEDRKIFAERVAEIGEKVAPSEA 266

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +     Q+   +H  QL+I++
Sbjct: 267 VYSVQEALEAAEKLGYPVMARAAFSLGGLGSGFANNKEELISLAQQALPHSH--QLIIDK 324

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 325 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNLLRTT 383

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +PLS + + +E+N +  ++  S     +   GY    +  
Sbjct: 384 AINVIRHFGVVGECNIQYALNPLSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 439

Query: 291 WM 292
            +
Sbjct: 440 KL 441


>gi|33772534|gb|AAQ54666.1| carbamoylphosphate synthetase [Agapophytus bicolor]
          Length = 486

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 38/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P+    
Sbjct: 148 SGSQAIKAMREEKIQTILINPNIATVQTSKGLADKVYFLPLTRDYVEQVIKAERPNGVLL 207

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+      V+     V    +
Sbjct: 208 TFGGQTALNCGVELERAGIFEKYNVKILGTPIXSIIETEDRKIFADRVAEIGEKVAPSEA 267

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 268 VYSVQEALEAAERLGYPVMARAAFSLGGLGSGFANNKEELIS--LAQQALPHSNQLIIDK 325

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 326 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNLLRTT 384

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +PLS + + +E+N +  ++  S     +   GY    +  
Sbjct: 385 AINVIRHFGVVGECNIQYALNPLSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 440

Query: 291 WM 292
            +
Sbjct: 441 KL 442


>gi|17567343|ref|NP_509293.1| Propionyl Coenzyme A Carboxylase Alpha subunit family member
           (pcca-1) [Caenorhabditis elegans]
 gi|74964123|sp|Q19842|PCCA_CAEEL RecName: Full=Propionyl-CoA carboxylase alpha chain, mitochondrial;
           Short=PCCase subunit alpha; AltName:
           Full=Propanoyl-CoA:carbon dioxide ligase subunit alpha;
           Flags: Precursor
 gi|1203927|gb|AAA93384.1| Propionyl coenzyme a carboxylase alpha subunit protein 1, confirmed
           by transcript evidence [Caenorhabditis elegans]
          Length = 724

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/216 (17%), Positives = 72/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A LE     +      A     DK+ SK++ ++  V + P         
Sbjct: 129 YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKIATAARVSMIPGYDGEIADE 188

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
           D        I  P +IK   GG   G+ V   D+        S       +     L+ +
Sbjct: 189 DMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFGDDRMLVEK 248

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   V+ D   +   +   +        K      +  +P     ++ +++  
Sbjct: 249 FIDNPRHIEMQVLCDKHGNALWLNERECSIQRRNQKVIEEAPSSFVPP----EMRRKMGE 304

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +A+G       +FL D      ++LE+N +
Sbjct: 305 QAVQLAKAVGYDSAGTVEFLVDSQRN-FYFLEMNTR 339


>gi|55379905|ref|YP_137755.1| carbamoyl phosphate synthase large subunit [Haloarcula marismortui
           ATCC 43049]
 gi|55232630|gb|AAV48049.1| carbamoylphosphate synthetase large subunit [Haloarcula marismortui
           ATCC 43049]
          Length = 1083

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 48/335 (14%), Positives = 101/335 (30%), Gaps = 54/335 (16%)

Query: 1   MAVLMGGISSEREVSLSSGKAC---------ASALEDAGFKVSQIDVD------------ 39
           + V+ GG        +  G+             ALE+ G     ++ +            
Sbjct: 598 VVVVGGGP-------IRIGQGVEFDYCSVHAVRALENLGIDAHVVNNNPETVSTDYDTSD 650

Query: 40  ---------RSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILEL------LEIPYTHSGI 84
                      V  V+     D       G    D       EL       EI  T    
Sbjct: 651 GLFFEPVTAEEVADVIEATDADGVMVQFGGQTSVDIGHPLEQELERRDLDCEIMGTSVDA 710

Query: 85  LASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVI 144
           +  A   D+                S       +D  H I  P +++P        + V+
Sbjct: 711 MDLAEDRDRFNKLMDELGISQAEGGSATSKEEALDLAHDIGYPVLVRPSYVLGGRAMDVV 770

Query: 145 KKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYEL 204
             D+ +   + ++   +    +L+++++        +  DA  D  ++ +     +    
Sbjct: 771 YNDEDLETYIEEAVRVSPDKPILVDEFLAD---AVELDVDAVADEDDVLIGGVMEHVETA 827

Query: 205 KYSSLNSTHVLPAKIP--LDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEI 262
              S +S  ++P +     D+   ++ +      A+   G+            +VF LE 
Sbjct: 828 GIHSGDSACMIPPRSQEIKDVMPRIREVVEDIADALDTVGLLNVQLAV--RDGEVFVLEA 885

Query: 263 NVQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
           N +   T     P ++  AG    ++   ++  A+
Sbjct: 886 NPRSSRT----VPFISKTAGVPIAKIAAKVMSGAT 916


>gi|260061401|ref|YP_003194481.1| Acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
 gi|88785533|gb|EAR16702.1| Acetyl-CoA carboxylase, biotin carboxylase [Robiginitalea biformata
           HTCC2501]
          Length = 452

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/150 (14%), Positives = 50/150 (33%), Gaps = 10/150 (6%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIEQYVDGI 175
              +  P +IK   GG   G+  I K++ +      +       + +G   + +   +  
Sbjct: 148 AKKMGYPVMIKATAGGGGKGMRAIWKEEELVKQFESAVKEAEAAFGNGGMYMEKLIEEPR 207

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD       ++           +     +       +   +   + + A  A 
Sbjct: 208 HIEIQVVGDQYGKACHLSERDCSIQ----RRHQKLTEETPSPFMTDKLRDAMGKAAVRAA 263

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           + I   G    +FL D      +++E+N +
Sbjct: 264 EFIKYEGAGTVEFLVDKHRN-FYFMEMNTR 292


>gi|126175036|ref|YP_001051185.1| carbamoyl-phosphate synthase L chain ATP-binding [Shewanella
           baltica OS155]
 gi|125998241|gb|ABN62316.1| 3-methylcrotonoyl-CoA carboxylase, alpha subunit [Shewanella
           baltica OS155]
          Length = 680

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 22/146 (15%), Positives = 46/146 (31%), Gaps = 2/146 (1%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P +IK   GG   G+ +++ +  I   +  +           +  ++       
Sbjct: 153 ALKIGFPMLIKAAYGGGGKGMRIVENEGEIMEAVNSARREAASSFGNDKLLMERYLRQPR 212

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLD-IYKEVQRLAFLAHQAIG 239
            +       T             ++          PA    D +  ++   A  A +AI 
Sbjct: 213 HVEVQVFADTFGNAIYLSDRDCSIQRRHQKVVEEAPAPGLSDALRAQMGEAAVAAAKAID 272

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
             G    +FL D      +++E+N +
Sbjct: 273 YVGAGTVEFLLDT-DNSFYFMEMNTR 297


>gi|332363641|gb|EGJ41421.1| hypothetical protein HMPREF9380_0147 [Streptococcus sanguinis SK49]
          Length = 397

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/274 (14%), Positives = 74/274 (27%), Gaps = 36/274 (13%)

Query: 31  FKVSQIDVDRSVGLVLA-------HLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSG 83
            +V  +DV+R     L                      +      Q + + L I      
Sbjct: 47  HRVPIVDVNRFPVDYLRQVSQLLHKTNYKAILPTHEEGWLLANGKQFLPQSLPIALADKE 106

Query: 84  ILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIV 143
                           +    +P    +           L+  PY +K   G +   +  
Sbjct: 107 QFKKLAGKIAFAETADLLGLPIPKWEYVKDVDSI-----LLDYPYWLKADYGTAGRSVYK 161

Query: 144 IKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYE 203
           I   + +    + S      ++ +++Q + G       + D    +              
Sbjct: 162 ISSKKDL--AEVTSKLTASDEEWMVQQDIVGDYGQVQAVFDHGELLAVH----------- 208

Query: 204 LKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                 +      A       K  +       Q I   G    DF+      + +++E N
Sbjct: 209 SSVKVGSGAGGSAAARLSIESKRTREHVEKLGQYIQWHGCLTLDFI--RRGDQFYYIECN 266

Query: 264 VQPGMTPVSIFPEMAAYAGYSFRELLLWMVEDAS 297
             P M      P  A  AG +F ++   M+E AS
Sbjct: 267 --PRMVE----PANAYKAGVNFPKI---MIELAS 291


>gi|320165739|gb|EFW42638.1| propionyl-CoA carboxylase [Capsaspora owczarzaki ATCC 30864]
          Length = 775

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 26/191 (13%), Positives = 62/191 (32%), Gaps = 30/191 (15%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPL-----DLLQSSSWNHGDQLLIEQYVDGI 175
              I  P ++K   GG   G+ V   D+ +           +SS+      + +   +  
Sbjct: 226 AQEIGYPVMVKASGGGGGKGMRVAWNDEEVREGFKLSAAEAASSFGDDRLFVEKFIDNPR 285

Query: 176 ELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAH 235
            +   V+GD   +V  +   +        + +         + I  +   ++ + A +  
Sbjct: 286 HIEIQVLGDNHGNVVYLNERECSIQ----RRNQKVIEEAPSSFIDPETRAKMGQQAVMLA 341

Query: 236 QAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAY------AGYSFRELL 289
           +A+        + + D      ++LE+N +              +       G    +L+
Sbjct: 342 KAVKYNSAGTVEMMVDSKRN-FYFLEMNTR----------LQVEHPITEYITGV---DLV 387

Query: 290 LWMVEDASCLR 300
             M+  A+  R
Sbjct: 388 EQMIRSAA-NR 397


>gi|311103335|ref|YP_003976188.1| methylcrotonoyl-CoA carboxylase subunit alpha 1 [Achromobacter
           xylosoxidans A8]
 gi|310758024|gb|ADP13473.1| methylcrotonoyl-CoA carboxylase alpha subunit 1 [Achromobacter
           xylosoxidans A8]
          Length = 674

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 20/147 (13%), Positives = 42/147 (28%), Gaps = 2/147 (1%)

Query: 120 SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTC 179
               I  P +IK   GG   G+ V++   +    L                 ++      
Sbjct: 147 QADAIGYPVLIKASAGGGGKGMRVVESSGAFLDALASCQREAASSFGDDRVLIERYLQKP 206

Query: 180 GVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ-RLAFLAHQAI 238
             +       T             ++          PA    +  +      A  A +A+
Sbjct: 207 RHIEIQVFADTHGNCVYLFERDCSVQRRHQKVIEEAPAPGMTEERRRAMGEAAVAAARAV 266

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQ 265
           G  G    +F+      + +++E+N +
Sbjct: 267 GYVGAGTVEFI-AEPDGRFYFMEMNTR 292


>gi|308511379|ref|XP_003117872.1| CRE-PCCA-1 protein [Caenorhabditis remanei]
 gi|308238518|gb|EFO82470.1| CRE-PCCA-1 protein [Caenorhabditis remanei]
          Length = 726

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 72/216 (33%), Gaps = 14/216 (6%)

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
           +G   E+    A LE     +      A     DK+ SK++ ++  V + P         
Sbjct: 130 YGFLSENTKFAAELEKAGAKFIGPNSKAILDMGDKIHSKKIATAARVSMIPGFDGEIADE 189

Query: 119 DSQHL----ISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSS-----WNHGDQLLIE 169
           D        I  P +IK   GG   G+ V   D+        S       +     L+ +
Sbjct: 190 DMCVKVSRDIGYPVMIKASAGGGGKGMRVAWNDKQAREGYRLSKQEAASSFGDDRMLVEK 249

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQR 229
              +   +   ++ D   +   +   +        K      +  +P     ++ +++  
Sbjct: 250 FIDNPRHIEMQILCDKHGNALWLNERECSIQRRNQKVIEEAPSSFVPP----EMRRKMGE 305

Query: 230 LAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
            A    +A+G       +FL D      ++LE+N +
Sbjct: 306 QAVQLAKAVGYDSAGTVEFLVDSQRN-FYFLEMNTR 340


>gi|158451101|gb|ABW38911.1| putative CAD trifunctional protein [Anisota peigleri]
          Length = 976

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKVQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+ +   K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSGIFEKYNVNVLGTPIQSIVDTEDRKKFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + S  +I  P + +       LG      ++ +   +L   + +H DQL+I++
Sbjct: 496 VISVEEALKSAKIIGYPVMARSAFSLGGLGSGFANNEEELR--VLTHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|158451091|gb|ABW38906.1| putative CAD trifunctional protein [Anisota stigma fuscosa]
          Length = 976

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/302 (13%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKVQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRS--KQVVSSCGVPVCPS 110
              G      G +     I E   +    + I +   + D+ +   K       V    +
Sbjct: 436 TFGGQTALNCGVELQKSGIFEKYNVNVLGTPIQSIVDTEDRKKFAEKINAIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + S  +I  P + +       LG      ++ +   +L   + +H DQL+I++
Sbjct: 496 VISVEEALKSAKIIGYPVMARSAFSLGGLGSGFANNEEELR--VLTHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|148828150|ref|YP_001292903.1| acetyl-CoA carboxylase biotin carboxylase subunit [Haemophilus
           influenzae PittGG]
 gi|148719392|gb|ABR00520.1| acetyl-CoA carboxylase [Haemophilus influenzae PittGG]
          Length = 448

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 40/282 (14%), Positives = 79/282 (28%), Gaps = 38/282 (13%)

Query: 19  GKACASALEDAGFKVSQID--VDRSVGLVLAHLK-------------------------- 50
                 A ++ G K   +    DR +  VL   +                          
Sbjct: 14  ALRILRACKELGIKTVAVHSTADRDLKHVLLADETVCIGPAPSAKSYLNIPAIIAAAEVT 73

Query: 51  -PDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP 109
             D      +G   E+      +E     +         L  DK+ + + +   GVP  P
Sbjct: 74  GADAIHPG-YGFLSENADFAEQVERSGFTFIGPTADVIRLMGDKVSAIKAMKKAGVPCVP 132

Query: 110 SILVNRFTMD-----SQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGD 164
                              I  P +IK   GG   G+ V++ + ++   +  + +     
Sbjct: 133 GSDGPVSNDIAKNKEIAKRIGYPIIIKASGGGGGRGMRVVRSEDALEESIAMTKAEAKAA 192

Query: 165 QLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIY 224
                 Y++        +    L  T             ++          PA    +  
Sbjct: 193 FNNDMVYMEKYLENPRHVEIQVLADTHGNAVYLAERDCSMQRRHQKVVEEAPAPGITEEV 252

Query: 225 KEVQRLAF-LAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
           +         A   IG RG    +FL+   + + +++E+N +
Sbjct: 253 RRDIGSRCANACVEIGYRGAGTFEFLY--ENGEFYFIEMNTR 292


>gi|319649717|ref|ZP_08003873.1| pyruvate carboxylase [Bacillus sp. 2_A_57_CT2]
 gi|317398879|gb|EFV79561.1| pyruvate carboxylase [Bacillus sp. 2_A_57_CT2]
          Length = 1146

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 29/235 (12%), Positives = 72/235 (30%), Gaps = 9/235 (3%)

Query: 36  IDVDRSVGLVLAHLKPDLAFNVLHGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMR 95
           +D+   +  +      D      +G   E+       E   I +         +  DK++
Sbjct: 65  LDI-EGIIDIAKSSDVDAIHPG-YGFLSENIEFAKRCEEEGIIFIGPTSKHLDMFGDKVK 122

Query: 96  SKQVVSSCGVPVCPS----ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIP 151
           ++       +PV P     +      +        P +IK   GG   G+ +++  + + 
Sbjct: 123 ARTQAQLAEIPVIPGSDGPVESLDEVISFGKNHGFPIIIKASLGGGGRGMRIVRSLEDVK 182

Query: 152 LDLLQSSSWNHGDQLLIEQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNS 211
               ++ S         E YV+        +    +   E  +         ++      
Sbjct: 183 ESYERAKSEAKAAFGNDEVYVERFIERPKHIEVQIIGDNEGNIVHLYERDCSVQRRHQKV 242

Query: 212 THVLPAKI-PLDIYKEVQRLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQ 265
             V P       +  ++ + A    + +        +FL      + +++E+N +
Sbjct: 243 VEVAPCVSLSKKLRDDICQAAVNLMKNVDYINAGTVEFLV--SGDQFYFIEVNPR 295


>gi|254428160|ref|ZP_05041867.1| phosphoribosylglycinamide formyltransferase 2 [Alcanivorax sp.
           DG881]
 gi|196194329|gb|EDX89288.1| phosphoribosylglycinamide formyltransferase 2 [Alcanivorax sp.
           DG881]
          Length = 397

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 33/268 (12%), Positives = 72/268 (26%), Gaps = 23/268 (8%)

Query: 19  GKACASALEDAGFKVSQID--------------------VDRSVGLVLAHLKPDLAFNVL 58
           G+  A  L   G +V  +D                       ++  ++   KP L    +
Sbjct: 24  GREVALELIRYGCEVIAVDRYAHAPAMQVAQHSHVINMLDGAALRALVEQEKPALIVPEI 83

Query: 59  HGNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPSILVNRFTM 118
                ++ +         +P   +  L       +  + + +S                 
Sbjct: 84  EAIATDELVKLEEEGYTVVPTARATQLTMNREGIRCLAAEELSLPT-SPYRFADNEADYQ 142

Query: 119 DSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELT 178
            +   I  P V+KP+   S  G   +K D  +      + S     Q  +          
Sbjct: 143 QAVREIGFPCVVKPVMSSSGKGQSTLKNDDDVLPAWEYAQSGGRAGQGRVIVEGFVDFDY 202

Query: 179 CGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAI 238
              +                      + +        P  +     +  + +A     A+
Sbjct: 203 EITLLTVRHKAGNEIKTSYCAPIGHRQENGDYQESWQPQPMSEAALQGSREVALAITDAL 262

Query: 239 GCRGISRSDFLFDPLSRKVFWLEINVQP 266
           G +GI   +        KV++ E++ +P
Sbjct: 263 GGQGIFGVELFI--KGDKVYFSEVSPRP 288


>gi|195383326|ref|XP_002050377.1| GJ20237 [Drosophila virilis]
 gi|194145174|gb|EDW61570.1| GJ20237 [Drosophila virilis]
          Length = 2545

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 23/144 (15%), Positives = 53/144 (36%), Gaps = 6/144 (4%)

Query: 123 LISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDG-IELTCGV 181
            I  P +IK  +GG   GI  +   +  P    Q  +   G  + + +   G   L   +
Sbjct: 502 KIGFPVMIKASEGGGGKGIRRVDTTEEFPGLFRQVQAEVPGSPIFVMKLASGARHLEVQL 561

Query: 182 MGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRLAFLAHQAIGCR 241
           + D   +   +            +                ++++++++ A    + +G  
Sbjct: 562 LADQYGNAISLFGRDCSIQ----RRHQKIIEEAPAIVAQPEVFEDMEKAAVRLAKMVGYV 617

Query: 242 GISRSDFLFDPLSRKVFWLEINVQ 265
                ++L+DP   + F+LE+N +
Sbjct: 618 SAGTVEYLYDPE-GRYFFLELNPR 640


>gi|158451203|gb|ABW38962.1| putative CAD trifunctional protein [Lonomia achelous]
          Length = 976

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 39/302 (12%), Positives = 94/302 (31%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+++   +   I+ +                       V  V+   +P     
Sbjct: 376 SGSQGVKAMQEEKIQTVLINPNIATVQTSKGLADKVYFLPITPEYVEQVIKAERPTGVLL 435

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +     I E   +    + I +   + D+    + ++S    V    +
Sbjct: 436 TFGGQTALNCGVELQKSRIFEKYNVNVLGTPIQSIVDTEDRKIFAEKINSIGEKVAPSAA 495

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           ++     + +  +I  P + +       LG      ++ +   +L   + +H DQL+I++
Sbjct: 496 VISVEEALVAAVMIGYPVMARSAFSLGGLGSGFANNEEELR--VLAHQALSHSDQLIIDK 553

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 554 SLKGW-KEVEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLSNREYYMLRNT 612

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +P S + + +E+N +  ++  S     +   GY    +  
Sbjct: 613 AIKVIRHFGIVGECNIQYALNPNSEEFYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 668

Query: 291 WM 292
            +
Sbjct: 669 KL 670


>gi|33772530|gb|AAQ54664.1| carbamoylphosphate synthetase [Acraspisa sp. NCSU-0300001]
          Length = 449

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 90/302 (29%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     A+ +   +   I+ +                       V  V+   +P+    
Sbjct: 129 SGSQAIKAMREEKIQTILINPNIATVQTSKGLADKVYFLPLTRDYVEQVIKAERPNGVLL 188

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSC--GVPVCPS 110
              G      G +       E   +    + I +   + D+    + V+     V    +
Sbjct: 189 TFGGQTALNCGVELERAEFFEKYNVKILGTPIKSIIETEDRKIFAERVAEIGEKVAPSEA 248

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
           +   +  +++   +  P + +       LG       + +    L   +  H +QL+I++
Sbjct: 249 VYSVQEALEAADRLGYPVMARAAFSLGGLGSGFANNREELIS--LAEQALPHSNQLIIDK 306

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 307 SLKGW-KEVEYEVVRDAYDNCITVCNMENLDPLGIHTGESIVVAPSQTLSNREYNLLRTT 365

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    +  G  G     +  +PLS + + +E+N +  ++  S     +   GY    +  
Sbjct: 366 AINVIRHFGVIGECNIQYALNPLSEEYYIIEVNAR--LSRSS--ALASKATGYPLAYVAA 421

Query: 291 WM 292
            +
Sbjct: 422 KL 423


>gi|3024509|sp|Q91437|PYR1_SQUAC RecName: Full=CAD protein; Includes: RecName:
           Full=Glutamine-dependent carbamoyl-phosphate synthase;
           Includes: RecName: Full=Aspartate carbamoyltransferase;
           Includes: RecName: Full=Dihydroorotase
 gi|951096|gb|AAA74569.1| multifunctional protein CAD [Squalus acanthias]
          Length = 2242

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 37/302 (12%), Positives = 92/302 (30%), Gaps = 34/302 (11%)

Query: 18  SGKACASALEDAGFKVSQIDVD---------------------RSVGLVLAHLKPDLAFN 56
           SG     AL++   +   I+ +                       V  V+ + +PD    
Sbjct: 418 SGSQAIKALKEENVQSVLINPNIATVQTSKGLADKVYFLPITPEYVTQVIMNERPDGILL 477

Query: 57  VLHGN----FGEDGLVQAILELLEIPYTHSGILASALSMDK--MRSKQVVSSCGVPVCPS 110
              G      G +   + +LE   +    + + +  ++ D+     K    +  V    +
Sbjct: 478 TFGGQTALNCGVELQKRGVLEKYHVRVLGTPVSSIEMTEDRKIFVEKMAEINEYVVPSEA 537

Query: 111 ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQ 170
                    +   +  P +++       LG    +  + +   + Q+ +     Q+L+++
Sbjct: 538 AFTLEQAQGAAERLGYPVLVRAAFALGGLGSGFAQNKEELVTLVTQAFAHT--SQILVDK 595

Query: 171 YVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQRL 230
            + G                 I V   +       ++  +        +    Y  ++  
Sbjct: 596 SLKGW-KEIEYEVVRDAYDNCITVCNMENVDPLGIHTGESIVVAPSQTLNDKEYNLLRTT 654

Query: 231 AFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGMTPVSIFPEMAAYAGYSFRELLL 290
           A    + +G  G     +   P S + F +E+N +  ++  S     +   GY    +  
Sbjct: 655 AIKVIRHLGVVGECNIQYALSPESEQYFIIEVNAR--LSRSS--ALASKATGYPLAYVAA 710

Query: 291 WM 292
            +
Sbjct: 711 KL 712


>gi|327478859|gb|AEA82169.1| acetyl-CoA carboxylase subunit A [Pseudomonas stutzeri DSM 4166]
          Length = 471

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 21/146 (14%), Positives = 47/146 (32%), Gaps = 3/146 (2%)

Query: 121 QHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIEQYVDGIELTCG 180
              I  P ++K   GG   GI        +     +  S         E +++   +   
Sbjct: 147 AERIGYPVMLKATSGGGGRGIRRCNSQAELESAYPRVISEATKAFGSAEVFLEKCIVEPK 206

Query: 181 VMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKI-PLDIYKEVQRLAFLAHQAIG 239
            +    L  +             ++  +     + P+     +    +  LA  A +A+G
Sbjct: 207 HIEAQVLADSFGNTVHLFERDCSIQRRNQKLIEIAPSPQLTPEQRAYIGDLAVRAAKAVG 266

Query: 240 CRGISRSDFLFDPLSRKVFWLEINVQ 265
                  +FL      +V+++E+N +
Sbjct: 267 YENAGTVEFLL--ADGEVYFMEMNTR 290


>gi|282908925|ref|ZP_06316743.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
 gi|282327189|gb|EFB57484.1| acetyl-CoA carboxylase, biotin carboxylase [Staphylococcus aureus
           subsp. aureus WW2703/97]
          Length = 429

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 36/216 (16%), Positives = 66/216 (30%), Gaps = 10/216 (4%)

Query: 56  NVLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCPS-- 110
           N +H   G   E       +E   I +         +  DK+ ++Q V   GVPV P   
Sbjct: 51  NAIHPGYGFLSESTKFAQTVEEQGIAFIGPTKKTMEMMGDKITARQTVHHAGVPVIPGSN 110

Query: 111 --ILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLI 168
             +            I  P VIK   GG   GI ++KK + +     ++ S         
Sbjct: 111 DAVNHVSEIEKLAKDIGYPVVIKAASGGGGKGIRIVKKAEDLEKAFKEAKSEGKKYFDDD 170

Query: 169 EQYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEVQ 228
             YV+        +    +   +            ++  +       P     +  ++  
Sbjct: 171 RVYVEAFIPVAKHVEVQVMGDGQDNYVHLGERDCSVQRKNQKLIEESPCAALTEERRQQI 230

Query: 229 RLA-FLAHQAIGCRGISRSDFLFDPLSRKVFWLEIN 263
                   +A   R     +FL        +++E+N
Sbjct: 231 CNDAVKVARAANYRSAGTIEFLVT--DNAHYFIEMN 264


>gi|227890524|ref|ZP_04008329.1| biotin carboxylase [Lactobacillus salivarius ATCC 11741]
 gi|227867462|gb|EEJ74883.1| biotin carboxylase [Lactobacillus salivarius ATCC 11741]
          Length = 459

 Score = 44.5 bits (103), Expect = 0.018,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 98/314 (31%), Gaps = 45/314 (14%)

Query: 22  CASALEDAGFKVSQIDVD---RSVGLVLAHL-------KP-DLAFN-------------- 56
              +L++ G K   I       S+ + LA         +P D   N              
Sbjct: 17  IIRSLKELGIKSVAIYSTVDRESLHVQLADEAVCVGTARPQDSYLNMKNILAAAIGTGAE 76

Query: 57  VLH---GNFGEDGLVQAILELLEIPYTHSGILASALSMDKMRSKQVVSSCGVPVCP---- 109
            +H   G   E+     + E + I +         L  +K  +++ +   GVPV P    
Sbjct: 77  AIHPGFGFLSENSQFVEMCEAVGITFIGPNSEIIDLMGNKANAREQMQKSGVPVIPGSEG 136

Query: 110 SILVNRFTMDSQHLISPPYVIKPLKGGSSLGIIVIKKDQSIPLDLLQSSSWNHGDQLLIE 169
            I       +  + +  P ++K   GG   GI  +  D  +     ++            
Sbjct: 137 FIETVEEAKEVANKVGYPVLLKAAAGGGGKGIRKVNDDNELTSLFEEAKREAQVSFGDKR 196

Query: 170 QYVDGIELTCGVMGDASLDVTEIAVPKSDFYSYELKYSSLNSTHVLPAKIPLDIYKEV-Q 228
            Y++ I      +        +  V         ++ +        P  +  +  ++   
Sbjct: 197 MYLEKIMTNVKHIEVQIFRDKQGNVVYFPERDCSVQRNKQKMIEESPCLLITEEQRKELG 256

Query: 229 RLAFLAHQAIGCRGISRSDFLFDPLSRKVFWLEINVQPGM--TPVSIFPEMAAYAGYSFR 286
            +A  A  AI        +FL D      +++E+N +  +  T   +        G    
Sbjct: 257 NIAIKAANAINYVNTGTIEFLMDSQHN-FYFMEMNTRIQVEHTVTEMV------TGI--- 306

Query: 287 ELLLWMVEDASCLR 300
           +L+   V+ AS  R
Sbjct: 307 DLVKAQVKVASGER 320


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.312    0.117    0.344 

Lambda     K      H
   0.267   0.0360    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,335,423,851
Number of Sequences: 14124377
Number of extensions: 125411454
Number of successful extensions: 417465
Number of sequences better than 10.0: 10000
Number of HSP's better than 10.0 without gapping: 4812
Number of HSP's successfully gapped in prelim test: 9308
Number of HSP's that attempted gapping in prelim test: 395635
Number of HSP's gapped (non-prelim): 18589
length of query: 300
length of database: 4,842,793,630
effective HSP length: 138
effective length of query: 162
effective length of database: 2,893,629,604
effective search space: 468767995848
effective search space used: 468767995848
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 80 (35.6 bits)